Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	G	C	tCw	wGa	tC	Ga	tC_mutation	tC_mutation_to_G	tC_mutation_to_T	APOBEC_mutation	APOBEC_mutation_to_G	APOBEC_mutation_to_T	[tCw_to_G+tCw_to_T]_per_mut	tCw_to_G+tCw_to_T	BH_Fisher_p-value_tCw	APOBEC_enrich	tCw_to_G_enrich	tCw_to_T_enrich	p-value_GvT_skew	BH_p-value_GvT_skew	APOBEC_MutLoad_MinEstimate	"CONTEXT(+/-20)"	g_counts	c_counts	tcw_counts	wga_counts	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2	newbase	end	tum_allele1	tum_allele2	start	effect_idx	newbase_idx	pat_idx	is_coding	is_flank	is_indel	is_ins	is_del	is_missense	is_nonsense	is_splice	is_silent	gene_idx	context_and_effect	context65	categ_idx	trackpos	categ	gene	chr	pos	type	classification	ref_allele	patient	DistBetween_Mutations	Distance_to_LT_end	Distance_to_RT_end	Strain_Mutation_ID	Dataset_Mutation_ID	Complex_ID	Complex_Size	StrainCluster_ID	Dataset_Cluster_ID	Distance_Between_Clusters	Cluster_Size_Mutations	Cluster_Size_Complexes	Cluster_Length	Cluster_Coordination	Content_of_non_coordinated_cluster	Cluster_Pvalue
PTCHD2	57540	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	11561526	11561526	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0192307692307692	1	1	0.302752293577982	1.56422018348624	0	1	1	0	tcagagcagctgcagcagctGcatctcggcaaccgctcgcg	12	15	2	1	novel		TCGA-OR-A5J1-01A-11D-A29I-10	TCGA-OR-A5J1-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	352062e7-9b06-41cd-880c-38fe268c9bf3	1d288ab9-ab2d-4483-af84-f5d0f5837cda	.	PTCHD2-209	NM_020780	exon2	c.G477A	p.L159L	GCAGCTGCATCTC	.	22	8	38	0	.	0	0	0	0	0	A	11561526	G	A	11561526	2	1	1	1	0	0	0	0	0	0	0	1	12765	1306	46	3		3	PTCHD2	1	11561526	Silent	SNP	G	TCGA-OR-A5J1-01A-11D-A29I-10		11561526	237689095	1	1										
VPS13D	55187	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	12309384	12309384	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0192307692307692	1	1	0.302752293577982	1.56422018348624	0	1	1	0	aatgtgtccatgcaaaatgcTgtgaatgagcctgtgagtat	11	6	0	3	novel		TCGA-OR-A5J1-01A-11D-A29I-10	TCGA-OR-A5J1-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	352062e7-9b06-41cd-880c-38fe268c9bf3	1d288ab9-ab2d-4483-af84-f5d0f5837cda	.	VPS13D-95	NM_015378	exon6	c.T552G	p.A184A	AAATGCTGTGAAT	.	127	48	65	0	.	0	0	0	0	0	G	12309384	T	G	12309384	2	3	1	1	0	0	0	0	0	0	0	1	17230	1567	55	5		5	VPS13D	1	12309384	Silent	SNP	T	TCGA-OR-A5J1-01A-11D-A29I-10	747858	12309384	236941237	2	2										
PHC2	1912	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	33820015	33820015	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0192307692307692	1	1	0.302752293577982	1.56422018348624	0	1	1	0	ttcataccgtgagctggggaCggctggatgttagggctcgt	16	8	1	1	novel		TCGA-OR-A5J1-01A-11D-A29I-10	TCGA-OR-A5J1-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	352062e7-9b06-41cd-880c-38fe268c9bf3	1d288ab9-ab2d-4483-af84-f5d0f5837cda	.	PHC2-227	NM_198040	exon8	c.G1542A	p.P514P	TGGGGACGGCTGG	.	123	55	81	0	.	1	1	0	0	0	T	33820015	C	T	33820015	2	4	1	1	0	0	0	0	0	0	0	1	11846	523	19	1		1	PHC2	1	33820015	Silent	SNP	C	TCGA-OR-A5J1-01A-11D-A29I-10	21510631	33820015	215430606	3	3										
LCE1B	353132	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	152785074	152785097	+	In_Frame_Del	DEL	GCTGTGGCTCCAGCTCTGGGGGAA	GCTGTGGCTCCAGCTCTGGGGGAA	-													0.0192307692307692	1	1	0.302752293577982	1.56422018348624	0	1	1	0	cagtgtcagctccggaggctGctgtggctccagctctgggg					novel		TCGA-OR-A5J1-01A-11D-A29I-10	TCGA-OR-A5J1-10A-01D-A29L-10	GCTGTGGCTCCAGCTCTGGGGGAA	GCTGTGGCTCCAGCTCTGGGGGAA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	352062e7-9b06-41cd-880c-38fe268c9bf3	1d288ab9-ab2d-4483-af84-f5d0f5837cda	.	LCE1B-68	NM_178349	exon1	c.152_175del	p.51_59del	GAGGCTGCTGTGG	.	105	22	105	0	.	0	0	0	0	0	-	152785097	GCTGTGGCTCCAGCTCTGGGGGAA	-	152785074	7	5	1	1	0	1	0	1	0	0	0	0	8682	1319	46	0	154	0	LCE1B	1	152785074	In_Frame_Del	DEL	GCTGTGGCTCCAGCTCTGGGGGAA	TCGA-OR-A5J1-01A-11D-A29I-10	118965059	152785074	96465547	4	4										
LCE1A	353131	hgsc.bcm.edu	37	chr1	152800122	152800122	+	Silent	SNP	C	C	T													0.0192307692307692	1	1	0.302752293577982	1.56422018348624	0	1	1	0	tgtggctccagctctgggggCggctgcagctctgggggagg					rs148143373	byfrequency	TCGA-OR-A5J1-01A-11D-A29I-10	TCGA-OR-A5J1-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	352062e7-9b06-41cd-880c-38fe268c9bf3	1d288ab9-ab2d-4483-af84-f5d0f5837cda	.	LCE1A-70	NM_178348	exon1	c.C174T	p.G58G	TGGGGGCGGCTGC	.	73	8	73	0	C|1.000;T|0.000	0	0	0	0	0	T	152800122	C	T	152800122	2	4	1	1	0	0	0	0	0	0	0	1	8681	755	27	1		1	LCE1A	1	152800122	Silent	SNP	C	TCGA-OR-A5J1-01A-11D-A29I-10	15048	152800122	96450499	5	5	1	2								
LCE1A	353131	bcgsc.ca	37	chr1	152800131	152800131	+	Silent	SNP	C	C	T													0.0192307692307692	1	1	0.302752293577982	1.56422018348624	0	1	1	0	agctctgggggcggctgcagCtctgggggaggtggctgctg					novel		TCGA-OR-A5J1-01A-11D-A29I-10	TCGA-OR-A5J1-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	352062e7-9b06-41cd-880c-38fe268c9bf3	1d288ab9-ab2d-4483-af84-f5d0f5837cda	.	LCE1A-70	NM_178348	exon1	c.C183T	p.S61S	CTGCAGCTCTGGG	.	73	11	78	1	.	0	0	0	0	0	T	152800131	C	T	152800131	2	4	1	1	0	0	0	0	0	0	0	1	8681	796	28	3		3	LCE1A	1	152800131	Silent	SNP	C	TCGA-OR-A5J1-01A-11D-A29I-10	9	152800131	96450490	6	6	1	2								
DNMT3A	1788	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	25505395	25505395	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0192307692307692	1	1	0.302752293577982	1.56422018348624	0	1	1	0	gcttcaggcagggtctcagcTgcaccctctccctctgctgg	11	16	4	0	novel		TCGA-OR-A5J1-01A-11D-A29I-10	TCGA-OR-A5J1-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	352062e7-9b06-41cd-880c-38fe268c9bf3	1d288ab9-ab2d-4483-af84-f5d0f5837cda	.	DNMT3A-1924	NM_175630	exon4	c.A363T	p.A121A	CTCAGCTGCACCC	.	61	27	71	0	.	2	1	1	0	0	A	25505395	T	A	25505395	2	1	1	1	0	0	0	0	0	0	0	1	4687	1567	55	5		5	DNMT3A	2	25505395	Silent	SNP	T	TCGA-OR-A5J1-01A-11D-A29I-10		25505395	217693978	7	7										
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	179501161	179501161	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0192307692307692	1	1	0.302752293577982	1.56422018348624	0	1	1	0	agccgtggaggtcttttcttTgtttcccaaacgtaaaacac	8	10	2	0	novel		TCGA-OR-A5J1-01A-11D-A29I-10	TCGA-OR-A5J1-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	352062e7-9b06-41cd-880c-38fe268c9bf3	1d288ab9-ab2d-4483-af84-f5d0f5837cda	.	TTN-636	NM_001267550	exon225	c.A41293G	p.K13765E	TTTCTTTGTTTCC	.	105	49	112	0	.	0	0	0	0	0	C	179501161	T	C	179501161	3	2	1	1	0	0	0	0	1	0	0	0	16773	1821	63	4	66952	4	TTN	2	179501161	Missense_Mutation	SNP	T	TCGA-OR-A5J1-01A-11D-A29I-10	153995766	179501161	63698212	8	8										
TMEM40	55287	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	12779634	12779634	+	Splice_Site	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0192307692307692	1	1	0.302752293577982	1.56422018348624	0	1	1	0	tatttgagcttgtgtatttaCcacttgctgggtcagagcct	10	8	1	2	novel		TCGA-OR-A5J1-01A-11D-A29I-10	TCGA-OR-A5J1-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	352062e7-9b06-41cd-880c-38fe268c9bf3	1d288ab9-ab2d-4483-af84-f5d0f5837cda	.	TMEM40-90	NM_018306	exon8	c.424+1G>C	.	TATTTACCACTTG	.	147	60	127	0	.	0	0	0	0	0	G	12779634	C	G	12779634	5	3	1	1	0	0	0	0	0	0	1	0	16200	521	18	3	300	3	TMEM40	3	12779634	Splice_Site	SNP	C	TCGA-OR-A5J1-01A-11D-A29I-10		12779634	185242796	9	9										
TRAK1	22906	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	42265106	42265106	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0192307692307692	1	1	0.302752293577982	1.56422018348624	0	1	1	0	gggctgcagctcaatagtggCatccggcggaatcgcagctt	14	11	1	0	novel		TCGA-OR-A5J1-01A-11D-A29I-10	TCGA-OR-A5J1-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	352062e7-9b06-41cd-880c-38fe268c9bf3	1d288ab9-ab2d-4483-af84-f5d0f5837cda	.	TRAK1-91	NM_001042646	exon16	c.C2739T	p.G913G	TAGTGGCATCCGG	.	161	72	188	0	.	9	4	5	0	0	T	42265106	C	T	42265106	2	4	1	1	0	0	0	0	0	0	0	1	16487	697	25	3		3	TRAK1	3	42265106	Silent	SNP	C	TCGA-OR-A5J1-01A-11D-A29I-10	29485472	42265106	155757324	10	10										
CACNA1D	776	broad.mit.edu	37	chr3	53529193	53529195	+	Frame_Shift_Del	DEL	GAT	GAT	-													0.0192307692307692	1	1	0.302752293577982	1.56422018348624	0	1	1	0	tcgctcaataaatgttcgtgGatgatgatgatgatgatgat					novel		TCGA-OR-A5J1-01A-11D-A29I-10	TCGA-OR-A5J1-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	352062e7-9b06-41cd-880c-38fe268c9bf3	1d288ab9-ab2d-4483-af84-f5d0f5837cda	.	CACNA1D-100	NM_001128840	wholegene			TTCGTGGATGATG	.	463	7	394	0	.	0	0	0	0	0	-	53529195	GAT	-	53529193	7	5	1	1	0	1	0	1	0	0	0	0	2547	1189	41	0	2	0	CACNA1D	3	53529193	Frame_Shift_Del	DEL	GAT	TCGA-OR-A5J1-01A-11D-A29I-10	11264087	53529193	144493237	11	11										
ZIC4	84107	bcgsc.ca	37	chr3	147108756	147108756	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0192307692307692	1	1	0.302752293577982	1.56422018348624	0	1	1	0	gtacgcgccgccaccgccgcCgaggaggccacctgggactt	14	17	0	0	rs17509456	byfrequency	TCGA-OR-A5J1-01A-11D-A29I-10	TCGA-OR-A5J1-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	352062e7-9b06-41cd-880c-38fe268c9bf3	1d288ab9-ab2d-4483-af84-f5d0f5837cda	.	ZIC4-91	NM_001168378	exon4	c.G1116C	p.S372S	CGCCGCCGAGGAG	.	10	3	54	0	C|0.975;G|0.025	0	0	0	0	0	G	147108756	C	G	147108756	2	3	1	1	0	0	0	0	0	0	0	1	17718	639	23	2		2	ZIC4	3	147108756	Silent	SNP	C	TCGA-OR-A5J1-01A-11D-A29I-10	93579563	147108756	50913674	12	12										
LXN	56925	broad.mit.edu	37	chr3	158388792	158388792	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0192307692307692	1	1	0.302752293577982	1.56422018348624	0	1	1	0	atttaaggtgatacttatgtCctcttcctggaatatcctaa	6	8	1	1	novel		TCGA-OR-A5J1-01A-11D-A29I-10	TCGA-OR-A5J1-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	352062e7-9b06-41cd-880c-38fe268c9bf3	1d288ab9-ab2d-4483-af84-f5d0f5837cda	.	LXN-90	NM_020169	exon2	c.G146A	p.G49E	TTATGTCCTCTTC	.	356	4	376	0	.	10	10	0	0	0	T	158388792	C	T	158388792	3	4	1	1	0	0	0	0	1	0	0	0	9117	855	30	3	542	3	LXN	3	158388792	Missense_Mutation	SNP	C	TCGA-OR-A5J1-01A-11D-A29I-10	11280036	158388792	39633638	13	13										
MUC4	4585	bcgsc.ca	37	chr3	195509383	195509383	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0192307692307692	1	1	0.302752293577982	1.56422018348624	0	1	1	0	ggctggtgacatgaagagggGtggcgtgacctgtggatatt	18	5	0	4	novel		TCGA-OR-A5J1-01A-11D-A29I-10	TCGA-OR-A5J1-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	352062e7-9b06-41cd-880c-38fe268c9bf3	1d288ab9-ab2d-4483-af84-f5d0f5837cda	.	MUC4-90	NM_018406	exon2	c.C9068A	p.T3023N	AGAGGGGTGGCGT	.	155	11	489	5	.	0	0	0	0	0	T	195509383	G	T	195509383	3	4	1	1	0	0	0	0	1	0	0	0	10006	1261	44	3		3	MUC4	3	195509383	Missense_Mutation	SNP	G	TCGA-OR-A5J1-01A-11D-A29I-10	37120591	195509383	2513047	14	14										
SCFD2	152579	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	54231383	54231383	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0192307692307692	1	1	0.302752293577982	1.56422018348624	0	1	1	0	tccgcagcgatgacctgactTaaggaacctacagcaaaaca	8	12	0	2	novel		TCGA-OR-A5J1-01A-11D-A29I-10	TCGA-OR-A5J1-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	352062e7-9b06-41cd-880c-38fe268c9bf3	1d288ab9-ab2d-4483-af84-f5d0f5837cda	.	SCFD2-93	NM_152540	exon1	c.A726C	p.L242F	CTGACTTAAGGAA	.	159	76	144	0	.	5	3	2	0	0	G	54231383	T	G	54231383	3	3	1	1	0	0	0	0	1	0	0	0	13925	1751	61	5	1364	5	SCFD2	4	54231383	Missense_Mutation	SNP	T	TCGA-OR-A5J1-01A-11D-A29I-10		54231383	136922893	15	15										
FRAS1	80144	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	79399070	79399070	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0192307692307692	1	1	0.302752293577982	1.56422018348624	0	1	1	0	ttcactgtggagctcagcatGccagcttatgccctgttagg	11	11	2	0	novel		TCGA-OR-A5J1-01A-11D-A29I-10	TCGA-OR-A5J1-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	352062e7-9b06-41cd-880c-38fe268c9bf3	1d288ab9-ab2d-4483-af84-f5d0f5837cda	.	FRAS1-68	NM_025074	exon55	c.G7953A	p.M2651I	CAGCATGCCAGCT	.	267	113	241	2	.	0	0	0	0	0	A	79399070	G	A	79399070	3	1	1	1	0	0	0	0	1	0	0	0	6061	1319	46	3	8246	3	FRAS1	4	79399070	Missense_Mutation	SNP	G	TCGA-OR-A5J1-01A-11D-A29I-10	25167687	79399070	111755206	16	16										
TACR3	6870	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr4	104640739	104640739	+	Frame_Shift_Del	DEL	C	C	-													0.0192307692307692	1	1	0.302752293577982	1.56422018348624	0	1	1	0	ctcaactgcccccgtggccgCcccggcagctagcgaggcgg					novel		TCGA-OR-A5J1-01A-11D-A29I-10	TCGA-OR-A5J1-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	352062e7-9b06-41cd-880c-38fe268c9bf3	1d288ab9-ab2d-4483-af84-f5d0f5837cda	.	TACR3-525	NM_001059	exon1	c.94delG	p.A32fs	TGGCCGCCCCGGC	.	40	14	88	0	.	0	0	0	0	0	-	104640739	C	-	104640739	7	5	1	1	0	1	0	1	0	0	0	0	15544	739	26	0	1323	0	TACR3	4	104640739	Frame_Shift_Del	DEL	C	TCGA-OR-A5J1-01A-11D-A29I-10	25241669	104640739	86513537	17	17										
ANK2	287	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	114277261	114277261	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0192307692307692	1	1	0.302752293577982	1.56422018348624	0	1	1	0	tcctgcagctgttgccaaaaCagaactcttgacggaagtgg	11	10	1	2	novel		TCGA-OR-A5J1-01A-11D-A29I-10	TCGA-OR-A5J1-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	352062e7-9b06-41cd-880c-38fe268c9bf3	1d288ab9-ab2d-4483-af84-f5d0f5837cda	.	ANK2-583	NM_001148	exon38	c.C7487G	p.T2496R	CCAAAACAGAACT	.	75	28	70	0	.	0	0	0	0	0	G	114277261	C	G	114277261	3	3	1	1	0	0	0	0	1	0	0	0	621	478	17	3	7702	3	ANK2	4	114277261	Missense_Mutation	SNP	C	TCGA-OR-A5J1-01A-11D-A29I-10	9636522	114277261	76877015	18	18										
TRAM1L1	133022	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr4	118006510	118006519	+	Frame_Shift_Del	DEL	GAACGGGGGG	GAACGGGGGG	-													0.0192307692307692	1	1	0.302752293577982	1.56422018348624	0	1	1	0	caggatgaattcctggctgaGaacgggggggttcttggtgc					novel		TCGA-OR-A5J1-01A-11D-A29I-10	TCGA-OR-A5J1-10A-01D-A29L-10	GAACGGGGGG	GAACGGGGGG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	352062e7-9b06-41cd-880c-38fe268c9bf3	1d288ab9-ab2d-4483-af84-f5d0f5837cda	.	TRAM1L1-90	NM_152402	exon1	c.31_40del	p.11_14del	GGCTGAGAACGGG	.	109	29	108	0	.	0	0	0	0	0	-	118006519	GAACGGGGGG	-	118006510	7	5	1	1	0	1	0	1	0	0	0	0	16490	942	33	0	1073	0	TRAM1L1	4	118006510	Frame_Shift_Del	DEL	GAACGGGGGG	TCGA-OR-A5J1-01A-11D-A29I-10	3729249	118006510	73147766	19	19										
KLHL3	26249	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	136973018	136973018	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0192307692307692	1	1	0.302752293577982	1.56422018348624	0	1	1	0	cacccacactgctccgccgcGtgttcatcggggccacaaag	10	17	1	0	novel		TCGA-OR-A5J1-01A-11D-A29I-10	TCGA-OR-A5J1-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	352062e7-9b06-41cd-880c-38fe268c9bf3	1d288ab9-ab2d-4483-af84-f5d0f5837cda	.	KLHL3-90	NM_017415	exon11	c.C1286T	p.T429M	CGCCGCGTGTTCA	.	178	82	142	0	.	0	0	0	0	0	A	136973018	G	A	136973018	3	1	1	1	0	0	0	0	1	0	0	0	8404	1145	40	1	497	1	KLHL3	5	136973018	Missense_Mutation	SNP	G	TCGA-OR-A5J1-01A-11D-A29I-10		136973018	43942242	20	20										
GABRA1	2554	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr5	161300197	161300197	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0192307692307692	1	1	0.302752293577982	1.56422018348624	0	1	1	0	tttaaaggacctatgacagtCctccggttaaataacctaat	6	9	0	1	novel		TCGA-OR-A5J1-01A-11D-A29I-10	TCGA-OR-A5J1-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	352062e7-9b06-41cd-880c-38fe268c9bf3	1d288ab9-ab2d-4483-af84-f5d0f5837cda	.	GABRA1-93	NM_001127644	exon5	c.C330T	p.V110V	GACAGTCCTCCGG	.	72	8	90	0	.	0	0	0	0	0	T	161300197	C	T	161300197	2	4	1	1	0	0	0	0	0	0	0	1	6179	842	30	3		3	GABRA1	5	161300197	Silent	SNP	C	TCGA-OR-A5J1-01A-11D-A29I-10	24327179	161300197	19615063	21	21										
HIST1H3B	8358	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	26031919	26031919	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0192307692307692	1	1	0.302752293577982	1.56422018348624	0	1	1	0	gcggcgagcgagctggatgtCtttgggcataatagtcactc	14	9	2	0	novel		TCGA-OR-A5J1-01A-11D-A29I-10	TCGA-OR-A5J1-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	352062e7-9b06-41cd-880c-38fe268c9bf3	1d288ab9-ab2d-4483-af84-f5d0f5837cda	.	HIST1H3B-92	NM_003537	exon1	c.G370C	p.D124H	GGATGTCTTTGGG	.	128	51	111	0	.	0	0	0	0	0	G	26031919	C	G	26031919	3	3	1	1	0	0	0	0	1	0	0	0	7177	913	32	3	44	3	HIST1H3B	6	26031919	Missense_Mutation	SNP	C	TCGA-OR-A5J1-01A-11D-A29I-10		26031919	145083148	22	22										
MICA	100507436	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	31378525	31378525	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0192307692307692	1	1	0.302752293577982	1.56422018348624	0	1	1	0	accagggacttgacagggaaCggaaaggacctcaggatgac	14	9	1	2	rs17206561	byfrequency	TCGA-OR-A5J1-01A-11D-A29I-10	TCGA-OR-A5J1-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	352062e7-9b06-41cd-880c-38fe268c9bf3	1d288ab9-ab2d-4483-af84-f5d0f5837cda	.	.	NM_001177519	exon2	c.C276T	p.N92N	AGGGAACGGAAAG	.	232	108	196	1	C|0.765;T|0.235	25	16	9	0	0	T	31378525	C	T	31378525	2	4	1	1	0	0	0	0	0	0	0	1	9596	535	19	1		1	MICA	6	31378525	Silent	SNP	C	TCGA-OR-A5J1-01A-11D-A29I-10	5346606	31378525	139736542	23	23										
PRIM2	5558	bcgsc.ca	37	chr6	57393112	57393112	+	RNA	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0192307692307692	1	1	0.302752293577982	1.56422018348624	0	1	1	0	ttttttttctttttttaaagTcattcctacactagccaaga	3	8	2	1	rs11964288	byfrequency	TCGA-OR-A5J1-01A-11D-A29I-10	TCGA-OR-A5J1-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	352062e7-9b06-41cd-880c-38fe268c9bf3	1d288ab9-ab2d-4483-af84-f5d0f5837cda	.	PRIM2-227	.	.	.	.	TTAAAGTCATTCC	.	33	9	31	0	T|0.985;C|0.015	0	0	0	0	0	C	57393112	T	C	57393112	1	2	1	0	1	0	0	0	0	0	0	0	12523	1681	58	4		4	PRIM2	6	57393112	RNA	SNP	T	TCGA-OR-A5J1-01A-11D-A29I-10	26014587	57393112	113721955	24	24										
DDO	8528	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	110714258	110714258	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0192307692307692	1	1	0.302752293577982	1.56422018348624	0	1	1	0	aaagaatctctctgctatttTctgcatccggggacagattc	8	10	3	2	novel		TCGA-OR-A5J1-01A-11D-A29I-10	TCGA-OR-A5J1-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	352062e7-9b06-41cd-880c-38fe268c9bf3	1d288ab9-ab2d-4483-af84-f5d0f5837cda	.	DDO-155	NM_003649	exon5	c.A830C	p.E277A	CTATTTTCTGCAT	.	100	50	98	0	.	13	8	5	0	0	G	110714258	T	G	110714258	3	3	1	1	0	0	0	0	1	0	0	0	4340	1783	62	5	283	5	DDO	6	110714258	Missense_Mutation	SNP	T	TCGA-OR-A5J1-01A-11D-A29I-10	53321146	110714258	60400809	25	25										
DNAJB9	4189	bcgsc.ca	37	chr7	108212353	108212353	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0192307692307692	1	1	0.302752293577982	1.56422018348624	0	1	1	0	cctgacaaaaataagagcccGgatgctgaagcaaaattcag	9	9	1	3	rs1043615	byfrequency	TCGA-OR-A5J1-01A-11D-A29I-10	TCGA-OR-A5J1-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	352062e7-9b06-41cd-880c-38fe268c9bf3	1d288ab9-ab2d-4483-af84-f5d0f5837cda	.	DNAJB9-226	NM_012328	exon2	c.G183A	p.P61P	GAGCCCGGATGCT	.	127	5	139	1	G|0.543;A|0.457	11	11	0	0	0	A	108212353	G	A	108212353	2	1	1	1	0	0	0	0	0	0	0	1	4638	1103	39	1		1	DNAJB9	7	108212353	Silent	SNP	G	TCGA-OR-A5J1-01A-11D-A29I-10		108212353	50926310	26	26										
RBM28	55131	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	127954955	127954955	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0192307692307692	1	1	0.302752293577982	1.56422018348624	0	1	1	0	ccgcctttctcttctgctctGggggcaccttgctttgttcc	9	15	3	0	novel		TCGA-OR-A5J1-01A-11D-A29I-10	TCGA-OR-A5J1-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	352062e7-9b06-41cd-880c-38fe268c9bf3	1d288ab9-ab2d-4483-af84-f5d0f5837cda	.	RBM28-92	NM_018077	exon17	c.C1907T	p.P636L	TGCTCTGGGGGCA	.	178	63	153	0	.	15	10	5	0	0	A	127954955	G	A	127954955	3	1	1	1	0	0	0	0	1	0	0	0	13163	1348	47	3	384	3	RBM28	7	127954955	Missense_Mutation	SNP	G	TCGA-OR-A5J1-01A-11D-A29I-10	19742602	127954955	31183708	27	27										
KCNH2	3757	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	150647026	150647026	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.0192307692307692	1	1	0.302752293577982	1.56422018348624	0	1	1	0	agtgtctgtttgtggcggatCctgaagggaaggagaatgtg	17	4	1	2	novel		TCGA-OR-A5J1-01A-11D-A29I-10	TCGA-OR-A5J1-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	352062e7-9b06-41cd-880c-38fe268c9bf3	1d288ab9-ab2d-4483-af84-f5d0f5837cda	.	KCNH2-94	NM_172056	exon9	c.G2628C	p.R876S	GCGGATCCTGAAG	.	107	34	152	0	.	23	9	14	0	0	G	150647026	C	G	150647026	3	3	1	1	0	0	0	0	1	0	0	0	8053	854	30	3	1148	3	KCNH2	7	150647026	Missense_Mutation	SNP	C	TCGA-OR-A5J1-01A-11D-A29I-10	22692071	150647026	8491637	28	28										
GPR124	25960	broad.mit.edu	37	chr8	37697097	37697097	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0192307692307692	1	1	0.302752293577982	1.56422018348624	0	1	1	0	catgacctctgctgtctttgCggggggcatcacactcacca	10	14	4	1	novel		TCGA-OR-A5J1-01A-11D-A29I-10	TCGA-OR-A5J1-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	352062e7-9b06-41cd-880c-38fe268c9bf3	1d288ab9-ab2d-4483-af84-f5d0f5837cda	.	GPR124-157	NM_032777	exon16	c.C2468T	p.A823V	TCTTTGCGGGGGG	.	160	6	109	0	.	0	0	0	0	0	T	37697097	C	T	37697097	3	4	1	1	0	0	0	0	1	0	0	0	6658	768	27	1	2509	1	GPR124	8	37697097	Missense_Mutation	SNP	C	TCGA-OR-A5J1-01A-11D-A29I-10		37697097	108666925	29	29										
MEGF9	1955	bcgsc.ca	37	chr9	123421744	123421744	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0192307692307692	1	1	0.302752293577982	1.56422018348624	0	1	1	0	aggtaaaagccctctttgcaGgtttcacagtgaagcccctg	10	11	2	1	novel		TCGA-OR-A5J1-01A-11D-A29I-10	TCGA-OR-A5J1-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	352062e7-9b06-41cd-880c-38fe268c9bf3	1d288ab9-ab2d-4483-af84-f5d0f5837cda	.	.	NM_001080497	exon2	c.C711A	p.T237T	TTTGCAGGTTTCA	.	94	4	103	0	.	1	1	0	0	0	T	123421744	G	T	123421744	2	4	1	1	0	0	0	0	0	0	0	1	9492	987	35	3		3	MEGF9	9	123421744	Silent	SNP	G	TCGA-OR-A5J1-01A-11D-A29I-10		123421744	17791687	30	30										
SNAPC4	6621	broad.mit.edu;bcgsc.ca	37	chr9	139272547	139272547	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0192307692307692	1	1	0.302752293577982	1.56422018348624	0	1	1	0	gcccccttctcaggcccaggCtggcgcaggggcagcttctc	13	17	2	0	novel		TCGA-OR-A5J1-01A-11D-A29I-10	TCGA-OR-A5J1-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	352062e7-9b06-41cd-880c-38fe268c9bf3	1d288ab9-ab2d-4483-af84-f5d0f5837cda	.	SNAPC4-90	NM_003086	exon21	c.G3732A	p.Q1244Q	CCCAGGCTGGCGC	.	19	5	36	0	.	9	6	3	0	0	T	139272547	C	T	139272547	2	4	1	1	0	0	0	0	0	0	0	1	14872	796	28	3		3	SNAPC4	9	139272547	Silent	SNP	C	TCGA-OR-A5J1-01A-11D-A29I-10	15850803	139272547	1940884	31	31										
OPN4	94233	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr10	88419681	88419681	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0192307692307692	1	1	0.302752293577982	1.56422018348624	0	1	1	0	gaccttcggggcctgcaaggGcaatggcgagtccctgtggc	16	12	0	0	novel		TCGA-OR-A5J1-01A-11D-A29I-10	TCGA-OR-A5J1-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	352062e7-9b06-41cd-880c-38fe268c9bf3	1d288ab9-ab2d-4483-af84-f5d0f5837cda	.	OPN4-69	NM_001030015	exon7	c.G863A	p.G288D	GCAAGGGCAATGG	.	174	12	163	0	.	0	0	0	0	0	A	88419681	G	A	88419681	3	1	1	1	0	0	0	0	1	0	0	0	10911	1203	42	3	889	3	OPN4	10	88419681	Missense_Mutation	SNP	G	TCGA-OR-A5J1-01A-11D-A29I-10		88419681	47115066	32	32										
DNAJC4	3338	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr11	64001585	64001585	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0192307692307692	1	1	0.302752293577982	1.56422018348624	0	1	1	0	agcaggagcgacaacggctaGggcagcggcagccgccacca	15	14	0	0	novel		TCGA-OR-A5J1-01A-11D-A29I-10	TCGA-OR-A5J1-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	352062e7-9b06-41cd-880c-38fe268c9bf3	1d288ab9-ab2d-4483-af84-f5d0f5837cda	.	DNAJC4-226	NM_005528	exon7	c.G655T	p.G219W	CGGCTAGGGCAGC	.	54	7	60	0	.	151	125	26	0	0	T	64001585	G	T	64001585	3	4	1	1	0	0	0	0	1	0	0	0	4660	1000	35	3	677	3	DNAJC4	11	64001585	Missense_Mutation	SNP	G	TCGA-OR-A5J1-01A-11D-A29I-10		64001585	71004931	33	33										
KLRB1	3820	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	9760409	9760409	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0192307692307692	1	1	0.302752293577982	1.56422018348624	0	1	1	0	gagtctgtgggtaagtttaaCtcagcatatattgcttgttg	11	5	2	0	novel		TCGA-OR-A5J1-01A-11D-A29I-10	TCGA-OR-A5J1-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	352062e7-9b06-41cd-880c-38fe268c9bf3	1d288ab9-ab2d-4483-af84-f5d0f5837cda	.	KLRB1-90	NM_002258	exon1	c.G27C	p.E9D	GTTTAACTCAGCA	.	312	127	214	1	.	0	0	0	0	0	G	9760409	C	G	9760409	3	3	1	1	0	0	0	0	1	0	0	0	8435	564	20	3	673	3	KLRB1	12	9760409	Missense_Mutation	SNP	C	TCGA-OR-A5J1-01A-11D-A29I-10		9760409	124091486	34	34										
TAS2R20	259295	bcgsc.ca	37	chr12	11150319	11150319	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0192307692307692	1	1	0.302752293577982	1.56422018348624	0	1	1	0	agcaaaccaactctggagacTgccagagcagcaataatttg	9	10	1	2	rs11054143	byfrequency	TCGA-OR-A5J1-01A-11D-A29I-10	TCGA-OR-A5J1-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	352062e7-9b06-41cd-880c-38fe268c9bf3	1d288ab9-ab2d-4483-af84-f5d0f5837cda	.	TAS2R20-90	NM_176889	exon1	c.A156G	p.A52A	GGAGACTGCCAGA	.	143	6	143	0	T|0.678;C|0.322	1	1	0	0	0	C	11150319	T	C	11150319	2	2	1	1	0	0	0	0	0	0	0	1	15608	1567	55	4		4	TAS2R20	12	11150319	Silent	SNP	T	TCGA-OR-A5J1-01A-11D-A29I-10	1389910	11150319	122701576	35	35										
SALL2	6297	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr14	21991730	21991730	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0192307692307692	1	1	0.302752293577982	1.56422018348624	0	1	1	0	tctggccccccaggtgcatcCggacatgctgctgcagagtg	13	14	1	1	novel		TCGA-OR-A5J1-01A-11D-A29I-10	TCGA-OR-A5J1-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	352062e7-9b06-41cd-880c-38fe268c9bf3	1d288ab9-ab2d-4483-af84-f5d0f5837cda	.	SALL2-92	NM_005407	exon2	c.G2132A	p.R711Q	TGCATCCGGACAT	.	114	53	90	1	.	0	0	0	0	0	T	21991730	C	T	21991730	3	4	1	1	0	0	0	0	1	0	0	0	13846	652	23	1	895	1	SALL2	14	21991730	Missense_Mutation	SNP	C	TCGA-OR-A5J1-01A-11D-A29I-10		21991730	85357810	36	36										
ABHD4	63874	hgsc.bcm.edu	37	chr14	23078809	23078809	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0192307692307692	1	1	0.302752293577982	1.56422018348624	0	1	1	0	gcggccggattcctatgtccGagacatggtatgttgcacca	12	11	0	1	novel		TCGA-OR-A5J1-01A-11D-A29I-10	TCGA-OR-A5J1-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	352062e7-9b06-41cd-880c-38fe268c9bf3	1d288ab9-ab2d-4483-af84-f5d0f5837cda	.	ABHD4-90	NM_022060	exon6	c.G932A	p.R311Q	ATGTCCGAGACAT	.	80	4	40	0	.	0	0	0	0	0	A	23078809	G	A	23078809	3	1	1	1	0	0	0	0	1	0	0	0	84	1058	37	1	954	1	ABHD4	14	23078809	Missense_Mutation	SNP	G	TCGA-OR-A5J1-01A-11D-A29I-10	1087079	23078809	84270731	37	37										
PLCB2	5330	broad.mit.edu;bcgsc.ca	37	chr15	40587141	40587141	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0192307692307692	1	1	0.302752293577982	1.56422018348624	0	1	1	0	ctgggaatgccctcacccatCgtctggaagttgagggcaac	12	12	2	1	rs201613773		TCGA-OR-A5J1-01A-11D-A29I-10	TCGA-OR-A5J1-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	352062e7-9b06-41cd-880c-38fe268c9bf3	1d288ab9-ab2d-4483-af84-f5d0f5837cda	.	PLCB2-275	NM_004573	exon18	c.G1902A	p.T634T	ACCCATCGTCTGG	.	92	41	95	2	C|1.000;T|0.000	1	1	0	0	0	T	40587141	C	T	40587141	2	4	1	1	0	0	0	0	0	0	0	1	12057	871	31	1		1	PLCB2	15	40587141	Silent	SNP	C	TCGA-OR-A5J1-01A-11D-A29I-10		40587141	61944251	38	38										
KLHDC4	54758	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr16	87742934	87742934	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0192307692307692	1	1	0.302752293577982	1.56422018348624	0	1	1	0	caggtccaggcagtgcaggtCgctgagggtgacctggcggt	18	10	0	2	novel		TCGA-OR-A5J1-01A-11D-A29I-10	TCGA-OR-A5J1-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	352062e7-9b06-41cd-880c-38fe268c9bf3	1d288ab9-ab2d-4483-af84-f5d0f5837cda	.	KLHDC4-182	NM_017566	exon10	c.G1384A	p.D462N	GCAGGTCGCTGAG	.	201	53	127	1	.	65	49	16	0	0	T	87742934	C	T	87742934	3	4	1	1	0	0	0	0	1	0	0	0	8379	884	31	1	186	1	KLHDC4	16	87742934	Missense_Mutation	SNP	C	TCGA-OR-A5J1-01A-11D-A29I-10		87742934	2611819	39	39										
SCARF1	8578	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	1543262	1543262	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0192307692307692	1	1	0.302752293577982	1.56422018348624	0	1	1	0	cctgtcacagtatcacaggaCccctgaacacaggtggggca	11	13	2	1	novel		TCGA-OR-A5J1-01A-11D-A29I-10	TCGA-OR-A5J1-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	352062e7-9b06-41cd-880c-38fe268c9bf3	1d288ab9-ab2d-4483-af84-f5d0f5837cda	.	SCARF1-91	NM_145350	exon6	c.G1083A	p.G361G	ACAGGACCCCTGA	.	195	64	133	0	.	1	1	0	0	0	T	1543262	C	T	1543262	2	4	1	1	0	0	0	0	0	0	0	1	13918	494	18	3		3	SCARF1	17	1543262	Silent	SNP	C	TCGA-OR-A5J1-01A-11D-A29I-10		1543262	79651948	40	40										
NOL11	25926	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	65734087	65734087	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0192307692307692	1	1	0.302752293577982	1.56422018348624	0	1	1	0	cttgcttaaaaattttcttgAggtaagttagactccaatgg	8	6	1	2	novel		TCGA-OR-A5J1-01A-11D-A29I-10	TCGA-OR-A5J1-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	352062e7-9b06-41cd-880c-38fe268c9bf3	1d288ab9-ab2d-4483-af84-f5d0f5837cda	.	NOL11-90	NM_015462	exon13	c.A1528C	p.S510R	TTCTTGAGGTAAG	.	58	26	52	0	.	1	0	1	0	0	C	65734087	A	C	65734087	3	2	1	1	0	0	0	0	1	0	0	0	10550	318	11	5	1578	5	NOL11	17	65734087	Missense_Mutation	SNP	A	TCGA-OR-A5J1-01A-11D-A29I-10	64190825	65734087	15461123	41	41										
LAMA3	3909	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr18	21461949	21461949	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0192307692307692	1	1	0.302752293577982	1.56422018348624	0	1	1	0	ctgtgaacgctgccaggaggGctactatggcaacgccgtcc	13	13	0	1	novel		TCGA-OR-A5J1-01A-11D-A29I-10	TCGA-OR-A5J1-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	352062e7-9b06-41cd-880c-38fe268c9bf3	1d288ab9-ab2d-4483-af84-f5d0f5837cda	.	LAMA3-100	NM_001127717	exon40	c.G5162A	p.G1721D	AGGAGGGCTACTA	.	189	82	142	0	.	0	0	0	0	0	A	21461949	G	A	21461949	3	1	1	1	0	0	0	0	1	0	0	0	8629	1203	42	3	5495	3	LAMA3	18	21461949	Missense_Mutation	SNP	G	TCGA-OR-A5J1-01A-11D-A29I-10		21461949	56615299	42	42										
WDR7	23335	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr18	54348602	54348602	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0192307692307692	1	1	0.302752293577982	1.56422018348624	0	1	1	0	ttgaatttacaaaattagctTgcacacatactggcatacag	6	8	0	1	novel		TCGA-OR-A5J1-01A-11D-A29I-10	TCGA-OR-A5J1-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	352062e7-9b06-41cd-880c-38fe268c9bf3	1d288ab9-ab2d-4483-af84-f5d0f5837cda	.	WDR7-93	NM_052834	exon4	c.T325C	p.C109R	TTAGCTTGCACAC	.	196	49	156	0	.	1	1	0	0	0	C	54348602	T	C	54348602	3	2	1	1	0	0	0	0	1	0	0	0	17358	1812	63	4	335	4	WDR7	18	54348602	Missense_Mutation	SNP	T	TCGA-OR-A5J1-01A-11D-A29I-10	32886653	54348602	23728646	43	43										
THOP1	7064	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	2790453	2790453	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0192307692307692	1	1	0.302752293577982	1.56422018348624	0	1	1	0	atggcggacgcagcatctccGtgctctgtggtaaacgacct	12	12	2	0	novel		TCGA-OR-A5J1-01A-11D-A29I-10	TCGA-OR-A5J1-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	352062e7-9b06-41cd-880c-38fe268c9bf3	1d288ab9-ab2d-4483-af84-f5d0f5837cda	.	THOP1-92	NM_003249	exon2	c.G51A	p.P17P	ATCTCCGTGCTCT	.	93	50	100	0	.	1	0	1	0	0	A	2790453	G	A	2790453	2	1	1	1	0	0	0	0	0	0	0	1	15908	1132	40	1		1	THOP1	19	2790453	Silent	SNP	G	TCGA-OR-A5J1-01A-11D-A29I-10		2790453	56338530	44	44										
ANKRD24	170961	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	4210319	4210319	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0192307692307692	1	1	0.302752293577982	1.56422018348624	0	1	1	0	ggcaggagaggggccgcctcCtgcagaagatccggggcctg	18	12	0	3	novel		TCGA-OR-A5J1-01A-11D-A29I-10	TCGA-OR-A5J1-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	352062e7-9b06-41cd-880c-38fe268c9bf3	1d288ab9-ab2d-4483-af84-f5d0f5837cda	.	ANKRD24-68	NM_133475	exon13	c.C1009T	p.L337L	CGCCTCCTGCAGA	.	411	171	426	0	.	1	1	0	0	0	T	4210319	C	T	4210319	2	4	1	1	0	0	0	0	0	0	0	1	653	680	24	3		3	ANKRD24	19	4210319	Silent	SNP	C	TCGA-OR-A5J1-01A-11D-A29I-10	1419866	4210319	54918664	45	45										
LYPD3	27076	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	43968541	43968541	+	Missense_Mutation	SNP	C	C	A													0.0192307692307692	1	1	0.302752293577982	1.56422018348624	0	1	1	0	ggcgcgcacttcactgtcttCatcttgttcggggagcatcc					novel		TCGA-OR-A5J1-01A-11D-A29I-10	TCGA-OR-A5J1-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	352062e7-9b06-41cd-880c-38fe268c9bf3	1d288ab9-ab2d-4483-af84-f5d0f5837cda	.	LYPD3-91	NM_014400	exon2	c.G147T	p.M49I	TGTCTTCATCTTG	.	207	29	99	0	.	0	0	0	0	0	A	43968541	C	A	43968541	3	1	1	1	0	0	0	0	1	0	0	0	9139	826	29	3	909	3	LYPD3	19	43968541	Missense_Mutation	SNP	C	TCGA-OR-A5J1-01A-11D-A29I-10	39758222	43968541	15160442	46	46	2	2								
LYPD3	27076	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	43968550	43968550	+	Silent	SNP	C	C	T													0.0192307692307692	1	1	0.302752293577982	1.56422018348624	0	1	1	0	ttcactgtcttcatcttgttCggggagcatccgtcatctgc					novel		TCGA-OR-A5J1-01A-11D-A29I-10	TCGA-OR-A5J1-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	352062e7-9b06-41cd-880c-38fe268c9bf3	1d288ab9-ab2d-4483-af84-f5d0f5837cda	.	LYPD3-91	NM_014400	exon2	c.G138A	p.P46P	CTTGTTCGGGGAG	.	219	29	112	1	.	0	0	0	0	0	T	43968550	C	T	43968550	2	4	1	1	0	0	0	0	0	0	0	1	9139	871	31	1		1	LYPD3	19	43968550	Silent	SNP	C	TCGA-OR-A5J1-01A-11D-A29I-10	9	43968550	15160433	47	47	2	2								
SMOX	54498	hgsc.bcm.edu	37	chr20	4162847	4162847	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0192307692307692	1	1	0.302752293577982	1.56422018348624	0	1	1	0	tcatcccctcgggcttcatgCgggttgtggagctgctggcg	15	12	2	0	novel		TCGA-OR-A5J1-01A-11D-A29I-10	TCGA-OR-A5J1-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	352062e7-9b06-41cd-880c-38fe268c9bf3	1d288ab9-ab2d-4483-af84-f5d0f5837cda	.	SMOX-153	NM_175839	exon5	c.C721T	p.R241W	TTCATGCGGGTTG	.	65	4	63	0	.	0	0	0	0	0	T	4162847	C	T	4162847	3	4	1	1	0	0	0	0	1	0	0	0	14838	759	27	1	735	1	SMOX	20	4162847	Missense_Mutation	SNP	C	TCGA-OR-A5J1-01A-11D-A29I-10		4162847	58862673	48	48										
GPCPD1	56261	broad.mit.edu	37	chr20	5556163	5556163	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0192307692307692	1	1	0.302752293577982	1.56422018348624	0	1	1	0	ttcatgtcacaactgtatccTggtaatggcttaataattat	6	7	2	0	novel		TCGA-OR-A5J1-01A-11D-A29I-10	TCGA-OR-A5J1-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	352062e7-9b06-41cd-880c-38fe268c9bf3	1d288ab9-ab2d-4483-af84-f5d0f5837cda	.	GPCPD1-90	NM_019593	exon10	c.A897T	p.P299P	GTATCCTGGTAAT	.	112	6	83	0	.	5	5	0	0	0	A	5556163	T	A	5556163	2	1	1	1	0	0	0	0	0	0	0	1	6623	1567	55	5		5	GPCPD1	20	5556163	Silent	SNP	T	TCGA-OR-A5J1-01A-11D-A29I-10	1393316	5556163	57469357	49	49										
RBL1	5933	hgsc.bcm.edu;bcgsc.ca	37	chr20	35696518	35696518	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0192307692307692	1	1	0.302752293577982	1.56422018348624	0	1	1	0	ttctctctagcctttctataCgttcacgaaattcttgtggt	6	10	5	0	novel		TCGA-OR-A5J1-01A-11D-A29I-10	TCGA-OR-A5J1-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	352062e7-9b06-41cd-880c-38fe268c9bf3	1d288ab9-ab2d-4483-af84-f5d0f5837cda	.	RBL1-419	NM_183404	exon3	c.G362A	p.R121H	TCTATACGTTCAC	.	51	4	51	0	.	0	0	0	0	0	T	35696518	C	T	35696518	3	4	1	1	0	0	0	0	1	0	0	0	13144	536	19	1	2933	1	RBL1	20	35696518	Missense_Mutation	SNP	C	TCGA-OR-A5J1-01A-11D-A29I-10	30140355	35696518	27329002	50	50										
ZBP1	81030	broad.mit.edu	37	chr20	56185352	56185352	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0192307692307692	1	1	0.302752293577982	1.56422018348624	0	1	1	0	gattctctgggcggcttcccCctcagggtgagttcctggac	13	13	2	1	novel		TCGA-OR-A5J1-01A-11D-A29I-10	TCGA-OR-A5J1-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	352062e7-9b06-41cd-880c-38fe268c9bf3	1d288ab9-ab2d-4483-af84-f5d0f5837cda	.	ZBP1-228	NM_030776	exon7	c.G946T	p.G316W	CTTCCCCCTCAGG	.	133	4	160	2	.	0	0	0	0	0	A	56185352	C	A	56185352	3	1	1	1	0	0	0	0	1	0	0	0	17558	623	22	3	351	3	ZBP1	20	56185352	Missense_Mutation	SNP	C	TCGA-OR-A5J1-01A-11D-A29I-10	20488834	56185352	6840168	51	51										
TNFRSF6B	8771	bcgsc.ca	37	chr20	62328267	62328267	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0192307692307692	1	1	0.302752293577982	1.56422018348624	0	1	1	0	acaggggagcggctggtgtgCgcccagtgccccccaggcac	16	15	0	0	rs2257440	byfrequency	TCGA-OR-A5J1-01A-11D-A29I-10	TCGA-OR-A5J1-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	352062e7-9b06-41cd-880c-38fe268c9bf3	1d288ab9-ab2d-4483-af84-f5d0f5837cda	.	TNFRSF6B-651	NM_003823	exon1	c.C147T	p.C49C	GGTGTGCGCCCAG	.	47	4	69	0	C|0.779;T|0.221	1	1	0	0	0	T	62328267	C	T	62328267	2	4	1	1	0	0	0	0	0	0	0	1	16335	776	27	1		1	TNFRSF6B	20	62328267	Silent	SNP	C	TCGA-OR-A5J1-01A-11D-A29I-10	6142915	62328267	697253	52	52										
BEX5	340542	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	101409174	101409174	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0192307692307692	1	1	0.302752293577982	1.56422018348624	0	1	1	0	gtattcaccacctcctaaagCgggggcttcattctgcactg	9	13	3	0	novel		TCGA-OR-A5J1-01A-11D-A29I-10	TCGA-OR-A5J1-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	352062e7-9b06-41cd-880c-38fe268c9bf3	1d288ab9-ab2d-4483-af84-f5d0f5837cda	.	BEX5-86	NM_001012978	exon3	c.G64A	p.A22T	CTAAAGCGGGGGC	.	31	27	52	0	.	7	7	0	0	0	T	101409174	C	T	101409174	3	4	1	1	0	0	0	0	1	0	0	0	1414	768	27	1	275	1	BEX5	23	101409174	Missense_Mutation	SNP	C	TCGA-OR-A5J1-01A-11D-A29I-10		101409174	53861386	53	53										
F8	2157	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chrX	154157135	154157135	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0192307692307692	1	1	0.302752293577982	1.56422018348624	0	1	1	0	cctaccttgctttgcccaggTgacttctatttcgggcttat	8	12	1	1	novel		TCGA-OR-A5J1-01A-11D-A29I-10	TCGA-OR-A5J1-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	352062e7-9b06-41cd-880c-38fe268c9bf3	1d288ab9-ab2d-4483-af84-f5d0f5837cda	.	F8-182	NM_000132	exon14	c.A4930G	p.T1644A	CCCAGGTGACTTC	.	55	5	66	0	.	0	0	0	0	0	C	154157135	T	C	154157135	3	2	1	1	0	0	0	0	1	0	0	0	5363	1696	59	4	2205	4	F8	23	154157135	Missense_Mutation	SNP	T	TCGA-OR-A5J1-01A-11D-A29I-10	52747961	154157135	1113425	54	54										
PTCHD2	57540	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	11561189	11561189	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.043010752688172	4	1	1.06192893401015	3.53976311336717	0.861023460008232	0.569230769230769	1	0	agggggacagtgttgctggcGgcactggcccctggcttccc	16	13	0	0	novel		TCGA-OR-A5J2-01A-11D-A29I-10	TCGA-OR-A5J2-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d97c6076-7e4f-4dbe-85de-12bc0d84d8e8	367617cb-2dce-4769-bd48-49d49dd3d93a	.	PTCHD2-209	NM_020780	exon2	c.G140A	p.R47Q	GCTGGCGGCACTG	.	64	57	51	0	.	2	0	2	0	0	A	11561189	G	A	11561189	3	1	2	1	0	0	0	0	1	0	0	0	12765	1116	39	1	142	1	PTCHD2	1	11561189	Missense_Mutation	SNP	G	TCGA-OR-A5J2-01A-11D-A29I-10		11561189	237689432	1	55										
CYP4A22	284541	bcgsc.ca	37	chr1	47610300	47610301	+	Nonsense_Mutation	DNP	AC	AC	TA													0.043010752688172	4	1	1.06192893401015	3.53976311336717	0.861023460008232	0.569230769230769	1	0	tgtttgagggccacgacaccAcagccagtgggatctcctgg					novel		TCGA-OR-A5J2-01A-11D-A29I-10	TCGA-OR-A5J2-10A-01D-A29L-10	AC	AC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d97c6076-7e4f-4dbe-85de-12bc0d84d8e8	367617cb-2dce-4769-bd48-49d49dd3d93a	.	CYP4A22-139	NM_001010969	exon8	c.C977A	p.T326*	ACACCACAGCCAG	.	440	0	548	0	.	0	0	0	0	0	TA	47610301	AC	TA	47610300	4	4	2	1	0	0	0	0	0	1	0	0	4190	159	6	5	1006	5	CYP4A22	1	47610300	Nonsense_Mutation	DNP	AC	TCGA-OR-A5J2-01A-11D-A29I-10	36049111	47610300	201640321	2	56										
MRPL37	51253	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr1	54678298	54678298	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.043010752688172	4	1	1.06192893401015	3.53976311336717	0.861023460008232	0.569230769230769	1	0	atgatcctgtttgcttttggCagtgccctggctcaggcccg	12	12	1	1	novel		TCGA-OR-A5J2-01A-11D-A29I-10	TCGA-OR-A5J2-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d97c6076-7e4f-4dbe-85de-12bc0d84d8e8	367617cb-2dce-4769-bd48-49d49dd3d93a	.	MRPL37-90	NM_016491	exon5	c.C957T	p.G319G	TTTTGGCAGTGCC	.	91	78	95	0	.	45	5	40	0	0	T	54678298	C	T	54678298	2	4	2	1	0	0	0	0	0	0	0	1	9828	697	25	3		3	MRPL37	1	54678298	Silent	SNP	C	TCGA-OR-A5J2-01A-11D-A29I-10	7067998	54678298	194572323	3	57										
IGSF3	3321	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr1	117150771	117150771	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.043010752688172	4	1	1.06192893401015	3.53976311336717	0.861023460008232	0.569230769230769	1	0	ggcttcccggtgagcaaattCgctgttgaggacaggcacag	14	10	0	2	novel		TCGA-OR-A5J2-01A-11D-A29I-10	TCGA-OR-A5J2-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d97c6076-7e4f-4dbe-85de-12bc0d84d8e8	367617cb-2dce-4769-bd48-49d49dd3d93a	.	IGSF3-92	NM_001007237	exon5	c.G1015A	p.E339K	CAAATTCGCTGTT	.	162	120	186	0	.	3	0	3	0	0	T	117150771	C	T	117150771	3	4	2	1	0	0	0	0	1	0	0	0	7622	893	31	1	2661	1	IGSF3	1	117150771	Missense_Mutation	SNP	C	TCGA-OR-A5J2-01A-11D-A29I-10	62472473	117150771	132099850	4	58										
HRNR	388697	bcgsc.ca	37	chr1	152189038	152189038	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.043010752688172	4	1	1.06192893401015	3.53976311336717	0.861023460008232	0.569230769230769	1	0	gagccagacccatgctgaccAtagcgggaagacgaacgtga	13	11	0	4	rs145118416	byfrequency	TCGA-OR-A5J2-01A-11D-A29I-10	TCGA-OR-A5J2-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d97c6076-7e4f-4dbe-85de-12bc0d84d8e8	367617cb-2dce-4769-bd48-49d49dd3d93a	.	HRNR-93	NM_001009931	exon3	c.T5067C	p.Y1689Y	CTGACCATAGCGG	.	157	53	272	15	A|0.968;G|0.032	0	0	0	0	0	G	152189038	A	G	152189038	2	3	2	1	0	0	0	0	0	0	0	1	7380	224	8	4		4	HRNR	1	152189038	Silent	SNP	A	TCGA-OR-A5J2-01A-11D-A29I-10	35038267	152189038	97061583	5	59										
CD1A	909	broad.mit.edu	37	chr1	158224501	158224501	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.043010752688172	4	1	1.06192893401015	3.53976311336717	0.861023460008232	0.569230769230769	1	0	ttgttagctgttctcccaggTgatggcaatgcagacggtaa	12	8	1	2	novel		TCGA-OR-A5J2-01A-11D-A29I-10	TCGA-OR-A5J2-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d97c6076-7e4f-4dbe-85de-12bc0d84d8e8	367617cb-2dce-4769-bd48-49d49dd3d93a	.	CD1A-93	NM_001763	exon1	c.T42G	p.G14G	CCCAGGTGATGGC	.	155	5	124	3	.	0	0	0	0	0	G	158224501	T	G	158224501	2	3	2	1	0	0	0	0	0	0	0	1	2980	1683	59	5		5	CD1A	1	158224501	Silent	SNP	T	TCGA-OR-A5J2-01A-11D-A29I-10	6035463	158224501	91026120	6	60										
NEK2	4751	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	211846871	211846871	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.043010752688172	4	1	1.06192893401015	3.53976311336717	0.861023460008232	0.569230769230769	1	0	caaatgtttttgcaaaactcGtgtcatggtttaatattcta	6	6	2	0	novel		TCGA-OR-A5J2-01A-11D-A29I-10	TCGA-OR-A5J2-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d97c6076-7e4f-4dbe-85de-12bc0d84d8e8	367617cb-2dce-4769-bd48-49d49dd3d93a	.	NEK2-765	NM_001204183	exon3	c.C509T	p.T170M	AAACTCGTGTCAT	.	205	43	154	0	.	0	0	0	0	0	A	211846871	G	A	211846871	3	1	2	1	0	0	0	0	1	0	0	0	10353	1145	40	1	852	1	NEK2	1	211846871	Missense_Mutation	SNP	G	TCGA-OR-A5J2-01A-11D-A29I-10	53622370	211846871	37403750	7	61										
ATL2	64225	bcgsc.ca;mdanderson.org	37	chr2	38604351	38604351	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.043010752688172	4	1	1.06192893401015	3.53976311336717	0.861023460008232	0.569230769230769	1	0	gctggtccgtcgccggcgccAcagcccctggtgcggttgct	15	16	0	0	rs3731847	byfrequency	TCGA-OR-A5J2-01A-11D-A29I-10	TCGA-OR-A5J2-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d97c6076-7e4f-4dbe-85de-12bc0d84d8e8	367617cb-2dce-4769-bd48-49d49dd3d93a	.	ATL2-228	NM_001135673	exon1	c.T52C	p.W18R	GGCGCCACAGCCC	.	116	103	24	1	A|0.523;G|0.477	38	0	38	0	0	G	38604351	A	G	38604351	3	3	2	1	0	0	0	0	1	0	0	0	1108	159	6	4	1863	4	ATL2	2	38604351	Missense_Mutation	SNP	A	TCGA-OR-A5J2-01A-11D-A29I-10		38604351	204595022	8	62										
LRP1B	53353	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	141298589	141298589	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.043010752688172	4	1	1.06192893401015	3.53976311336717	0.861023460008232	0.569230769230769	1	0	ttcggtcccctctgcaggaaCaattcactctcccattggga	8	14	3	0	novel		TCGA-OR-A5J2-01A-11D-A29I-10	TCGA-OR-A5J2-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d97c6076-7e4f-4dbe-85de-12bc0d84d8e8	367617cb-2dce-4769-bd48-49d49dd3d93a	.	LRP1B-311	NM_018557	exon45	c.G7466T	p.C2489F	CAGGAACAATTCA	.	77	62	115	2	.	0	0	0	0	0	A	141298589	C	A	141298589	3	1	2	1	0	0	0	0	1	0	0	0	8982	478	17	3	6521	3	LRP1B	2	141298589	Missense_Mutation	SNP	C	TCGA-OR-A5J2-01A-11D-A29I-10	102694238	141298589	101900784	9	63										
SP5	389058	hgsc.bcm.edu	37	chr2	171573185	171573185	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.043010752688172	4	1	1.06192893401015	3.53976311336717	0.861023460008232	0.569230769230769	1	0	gcggcgcaggccgcgctgccGccaggctactccaacctgct	13	18	0	0	rs1134626	byfrequency	TCGA-OR-A5J2-01A-11D-A29I-10	TCGA-OR-A5J2-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d97c6076-7e4f-4dbe-85de-12bc0d84d8e8	367617cb-2dce-4769-bd48-49d49dd3d93a	.	SP5-90	NM_001003845	exon2	c.G468T	p.P156P	GCTGCCGCCAGGC	.	10	10	0	0	G|0.766;T|0.234	1	0	1	0	0	T	171573185	G	T	171573185	2	4	2	1	0	0	0	0	0	0	0	1	15002	1074	38	2		2	SP5	2	171573185	Silent	SNP	G	TCGA-OR-A5J2-01A-11D-A29I-10	30274596	171573185	71626188	10	64										
AGXT	189	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	241812461	241812461	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.043010752688172	4	1	1.06192893401015	3.53976311336717	0.861023460008232	0.569230769230769	1	0	gacccccctttacatggaccGgcaaggtaagggtgggctct	13	12	1	0	rs34664134	byfrequency	TCGA-OR-A5J2-01A-11D-A29I-10	TCGA-OR-A5J2-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d97c6076-7e4f-4dbe-85de-12bc0d84d8e8	367617cb-2dce-4769-bd48-49d49dd3d93a	.	AGXT-90	NM_000030	exon5	c.G590A	p.R197Q	TGGACCGGCAAGG	.	45	37	72	0	G|0.993;A|0.007	0	0	0	0	0	A	241812461	G	A	241812461	3	1	2	1	0	0	0	0	1	0	0	0	404	1116	39	1	608	1	AGXT	2	241812461	Missense_Mutation	SNP	G	TCGA-OR-A5J2-01A-11D-A29I-10	70239276	241812461	1386912	11	65										
CDCP1	64866	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	45135039	45135039	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.043010752688172	4	1	1.06192893401015	3.53976311336717	0.861023460008232	0.569230769230769	1	0	caggctgagcctgtccttggGcaccagcagcttccaggaga	13	13	0	2	novel		TCGA-OR-A5J2-01A-11D-A29I-10	TCGA-OR-A5J2-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d97c6076-7e4f-4dbe-85de-12bc0d84d8e8	367617cb-2dce-4769-bd48-49d49dd3d93a	.	CDCP1-117	NM_022842	exon6	c.C1357T	p.P453S	CCTTGGGCACCAG	.	146	69	94	0	.	0	0	0	0	0	A	45135039	G	A	45135039	3	1	2	1	0	0	0	0	1	0	0	0	3099	1203	42	3	1169	3	CDCP1	3	45135039	Missense_Mutation	SNP	G	TCGA-OR-A5J2-01A-11D-A29I-10		45135039	152887391	12	66										
FBXW12	285231	bcgsc.ca	37	chr3	48422235	48422235	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.043010752688172	4	1	1.06192893401015	3.53976311336717	0.861023460008232	0.569230769230769	1	0	gagaccatcagaaggcagtgTtcctctgtctacctttctcc	8	13	4	2	rs6784322	byfrequency	TCGA-OR-A5J2-01A-11D-A29I-10	TCGA-OR-A5J2-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d97c6076-7e4f-4dbe-85de-12bc0d84d8e8	367617cb-2dce-4769-bd48-49d49dd3d93a	.	FBXW12-226	NM_207102	exon8	c.T818A	p.V273D	GCAGTGTTCCTCT	.	242	8	172	0	T|0.600;A|0.400	0	0	0	0	0	A	48422235	T	A	48422235	3	1	2	1	0	0	0	0	1	0	0	0	5784	1725	60	5	881	5	FBXW12	3	48422235	Missense_Mutation	SNP	T	TCGA-OR-A5J2-01A-11D-A29I-10	3287196	48422235	149600195	13	67										
CNTN3	5067	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	74316498	74316498	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.043010752688172	4	1	1.06192893401015	3.53976311336717	0.861023460008232	0.569230769230769	1	0	actttagtgtctgtggcattCcaaacaacatttcctggtgg	9	9	1	0	novel		TCGA-OR-A5J2-01A-11D-A29I-10	TCGA-OR-A5J2-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d97c6076-7e4f-4dbe-85de-12bc0d84d8e8	367617cb-2dce-4769-bd48-49d49dd3d93a	.	CNTN3-137	NM_020872	exon20	c.G2736T	p.W912C	GGCATTCCAAACA	.	137	23	94	0	.	0	0	0	0	0	A	74316498	C	A	74316498	3	1	2	1	0	0	0	0	1	0	0	0	3648	856	30	3	362	3	CNTN3	3	74316498	Missense_Mutation	SNP	C	TCGA-OR-A5J2-01A-11D-A29I-10	25894263	74316498	123705932	14	68										
PARP14	54625	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	122418659	122418659	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.043010752688172	4	1	1.06192893401015	3.53976311336717	0.861023460008232	0.569230769230769	1	0	taaaaaatgatgtgaaagatGacaggattttgattgagttt	10	1	0	6	novel		TCGA-OR-A5J2-01A-11D-A29I-10	TCGA-OR-A5J2-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d97c6076-7e4f-4dbe-85de-12bc0d84d8e8	367617cb-2dce-4769-bd48-49d49dd3d93a	.	PARP14-525	NM_017554	exon6	c.G1258A	p.D420N	AAAGATGACAGGA	.	176	28	88	0	.	4	3	1	0	0	A	122418659	G	A	122418659	3	1	2	1	0	0	0	0	1	0	0	0	11487	1290	45	3	1280	3	PARP14	3	122418659	Missense_Mutation	SNP	G	TCGA-OR-A5J2-01A-11D-A29I-10	48102161	122418659	75603771	15	69										
SEMA5B	54437	hgsc.bcm.edu	37	chr3	122631896	122631896	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.043010752688172	4	1	1.06192893401015	3.53976311336717	0.861023460008232	0.569230769230769	1	0	tgctcccgctgcgcaggaggAcctccaccagggctgcggag	15	15	0	0	rs2276782	byfrequency	TCGA-OR-A5J2-01A-11D-A29I-10	TCGA-OR-A5J2-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d97c6076-7e4f-4dbe-85de-12bc0d84d8e8	367617cb-2dce-4769-bd48-49d49dd3d93a	.	SEMA5B-157	NM_001256347	exon18	c.T2681A	p.V894D	AGGAGGACCTCCA	.	11	11	0	0	T|0.412;A|0.588	0	0	0	0	0	T	122631896	A	T	122631896	3	4	2	1	0	0	0	0	1	0	0	0	14073	275	10	5	960	5	SEMA5B	3	122631896	Missense_Mutation	SNP	A	TCGA-OR-A5J2-01A-11D-A29I-10	213237	122631896	75390534	16	70										
CLDN1	9076	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	190030751	190030751	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.043010752688172	4	1	1.06192893401015	3.53976311336717	0.861023460008232	0.569230769230769	1	0	cttcatacacttcatgccaaCggtggccacaaagattgcta	7	12	2	1	novel		TCGA-OR-A5J2-01A-11D-A29I-10	TCGA-OR-A5J2-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d97c6076-7e4f-4dbe-85de-12bc0d84d8e8	367617cb-2dce-4769-bd48-49d49dd3d93a	.	CLDN1-91	NM_021101	exon2	c.G298A	p.V100I	TGCCAACGGTGGC	.	235	44	176	0	.	181	160	21	0	0	T	190030751	C	T	190030751	3	4	2	1	0	0	0	0	1	0	0	0	3477	536	19	1	349	1	CLDN1	3	190030751	Missense_Mutation	SNP	C	TCGA-OR-A5J2-01A-11D-A29I-10	67398855	190030751	7991679	17	71										
DSPP	1834	bcgsc.ca	37	chr4	88536999	88536999	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.043010752688172	4	1	1.06192893401015	3.53976311336717	0.861023460008232	0.569230769230769	1	0	caatagcagtgacagcagtgAcagcagcgacagcagtgata	12	9	0	3	rs202222170		TCGA-OR-A5J2-01A-11D-A29I-10	TCGA-OR-A5J2-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d97c6076-7e4f-4dbe-85de-12bc0d84d8e8	367617cb-2dce-4769-bd48-49d49dd3d93a	.	DSPP-90	NM_014208	exon5	c.A3185G	p.D1062G	GCAGTGACAGCAG	.	276	16	354	0	.	0	0	0	0	0	G	88536999	A	G	88536999	3	3	2	1	0	0	0	0	1	0	0	0	4793	275	10	4	3199	4	DSPP	4	88536999	Missense_Mutation	SNP	A	TCGA-OR-A5J2-01A-11D-A29I-10		88536999	102617277	18	72										
SMAD1	4086	broad.mit.edu	37	chr4	146435774	146435774	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.043010752688172	4	1	1.06192893401015	3.53976311336717	0.861023460008232	0.569230769230769	1	0	agtgctgtcattatgaatgtGacaagtttattttcctttac	7	6	1	2	novel		TCGA-OR-A5J2-01A-11D-A29I-10	TCGA-OR-A5J2-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d97c6076-7e4f-4dbe-85de-12bc0d84d8e8	367617cb-2dce-4769-bd48-49d49dd3d93a	.	SMAD1-415	NM_005900	exon2	c.G9A	p.V3V	GAATGTGACAAGT	.	121	5	154	0	.	9	9	0	0	0	A	146435774	G	A	146435774	2	1	2	1	0	0	0	0	0	0	0	1	14792	1277	45	3		3	SMAD1	4	146435774	Silent	SNP	G	TCGA-OR-A5J2-01A-11D-A29I-10	57898775	146435774	44718502	19	73										
FAT1	2195	broad.mit.edu	37	chr4	187522507	187522507	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.043010752688172	4	1	1.06192893401015	3.53976311336717	0.861023460008232	0.569230769230769	1	0	agcctcatggtcagtttcatCtctaatttgttttcattttc	5	9	5	0	rs202035728		TCGA-OR-A5J2-01A-11D-A29I-10	TCGA-OR-A5J2-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d97c6076-7e4f-4dbe-85de-12bc0d84d8e8	367617cb-2dce-4769-bd48-49d49dd3d93a	.	FAT1-34	NM_005245	exon21	c.G11556C	p.E3852D	TTTCATCTCTAAT	.	97	4	110	0	.	25	25	0	0	0	G	187522507	C	G	187522507	3	3	2	1	0	0	0	0	1	0	0	0	5708	912	32	3	2238	3	FAT1	4	187522507	Missense_Mutation	SNP	C	TCGA-OR-A5J2-01A-11D-A29I-10	41086733	187522507	3631769	20	74										
PAPD7	11044	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	6753081	6753081	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.043010752688172	4	1	1.06192893401015	3.53976311336717	0.861023460008232	0.569230769230769	1	0	gcgtctttgaaagccgtccaCcacatgtcttccccggccat	8	16	2	1	novel		TCGA-OR-A5J2-01A-11D-A29I-10	TCGA-OR-A5J2-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d97c6076-7e4f-4dbe-85de-12bc0d84d8e8	367617cb-2dce-4769-bd48-49d49dd3d93a	.	PAPD7-69	NM_001171805	exon12	c.C1365T	p.H455H	CGTCCACCACATG	.	99	81	110	0	.	19	1	18	0	0	T	6753081	C	T	6753081	2	4	2	1	0	0	0	0	0	0	0	1	11455	506	18	3		3	PAPD7	5	6753081	Silent	SNP	C	TCGA-OR-A5J2-01A-11D-A29I-10		6753081	174162179	21	75										
ADCY2	108	bcgsc.ca	37	chr5	7520881	7520881	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.043010752688172	4	1	1.06192893401015	3.53976311336717	0.861023460008232	0.569230769230769	1	0	tcctcttcatcatcttcgtgGtgtacaccatgctgcccttc	6	15	4	0	rs13166360	byfrequency	TCGA-OR-A5J2-01A-11D-A29I-10	TCGA-OR-A5J2-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d97c6076-7e4f-4dbe-85de-12bc0d84d8e8	367617cb-2dce-4769-bd48-49d49dd3d93a	.	ADCY2-97	NM_020546	exon3	c.G439T	p.V147L	TTCGTGGTGTACA	.	88	6	148	0	G|0.850;T|0.150	1	1	0	0	0	T	7520881	G	T	7520881	3	4	2	1	0	0	0	0	1	0	0	0	294	1261	44	3	449	3	ADCY2	5	7520881	Missense_Mutation	SNP	G	TCGA-OR-A5J2-01A-11D-A29I-10	767800	7520881	173394379	22	76										
PCDHGA4	56111	broad.mit.edu	37	chr5	140736327	140736327	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.043010752688172	4	1	1.06192893401015	3.53976311336717	0.861023460008232	0.569230769230769	1	0	ctatatgctctttgctccttCgactatgagcagtttagaga	8	9	1	2	novel		TCGA-OR-A5J2-01A-11D-A29I-10	TCGA-OR-A5J2-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d97c6076-7e4f-4dbe-85de-12bc0d84d8e8	367617cb-2dce-4769-bd48-49d49dd3d93a	.	.	NM_018917	exon1	c.C1560T	p.F520F	CTCCTTCGACTAT	.	110	4	114	0	.	8	8	0	0	0	T	140736327	C	T	140736327	2	4	2	1	0	0	0	0	0	0	0	1	11585	883	31	1		1	PCDHGA4	5	140736327	Silent	SNP	C	TCGA-OR-A5J2-01A-11D-A29I-10	133215446	140736327	40178933	23	77										
RNF39	80352	hgsc.bcm.edu	37	chr6	30039364	30039364	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.043010752688172	4	1	1.06192893401015	3.53976311336717	0.861023460008232	0.569230769230769	1	0	ctgatcgaagcgcttggggcCgtcagggggcgcgggcgtcc	19	12	1	1	rs11753382		TCGA-OR-A5J2-01A-11D-A29I-10	TCGA-OR-A5J2-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d97c6076-7e4f-4dbe-85de-12bc0d84d8e8	367617cb-2dce-4769-bd48-49d49dd3d93a	.	RNF39-226	NM_025236	exon4	c.G787T	p.G263C	TGGGGCCGTCAGG	.	13	12	1	0	C|0.862;A|0.138	2	0	2	0	0	A	30039364	C	A	30039364	3	1	2	1	0	0	0	0	1	0	0	0	13526	652	23	2	479	2	RNF39	6	30039364	Missense_Mutation	SNP	C	TCGA-OR-A5J2-01A-11D-A29I-10		30039364	141075703	24	78										
NFKBIE	4794	hgsc.bcm.edu	37	chr6	44233372	44233372	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.043010752688172	4	1	1.06192893401015	3.53976311336717	0.861023460008232	0.569230769230769	1	0	cgcctcacgcggatggccccGccccctccccgcccccggcg	11	25	1	0	rs189481001	by1000genomes	TCGA-OR-A5J2-01A-11D-A29I-10	TCGA-OR-A5J2-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d97c6076-7e4f-4dbe-85de-12bc0d84d8e8	367617cb-2dce-4769-bd48-49d49dd3d93a	.	NFKBIE-135	NM_004556	exon1	c.C129T	p.G43G	GGCCCCGCCCCCT	.	7	7	1	0	G|0.995;A|0.005	0	0	0	0	0	A	44233372	G	A	44233372	2	1	2	1	0	0	0	0	0	0	0	1	10409	1074	38	1		1	NFKBIE	6	44233372	Silent	SNP	G	TCGA-OR-A5J2-01A-11D-A29I-10	14194008	44233372	126881695	25	79										
TRAM2	9697	hgsc.bcm.edu	37	chr6	52380882	52380882	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.043010752688172	4	1	1.06192893401015	3.53976311336717	0.861023460008232	0.569230769230769	1	0	ccagattcattgaacttgctGtgtttgactttggagagatg	11	6	1	4	novel		TCGA-OR-A5J2-01A-11D-A29I-10	TCGA-OR-A5J2-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d97c6076-7e4f-4dbe-85de-12bc0d84d8e8	367617cb-2dce-4769-bd48-49d49dd3d93a	.	TRAM2-90	NM_012288	exon4	c.C333A	p.H111Q	CTTGCTGTGTTTG	.	80	4	96	0	.	11	11	0	0	0	T	52380882	G	T	52380882	3	4	2	1	0	0	0	0	1	0	0	0	16491	1368	48	3	811	3	TRAM2	6	52380882	Missense_Mutation	SNP	G	TCGA-OR-A5J2-01A-11D-A29I-10	8147510	52380882	118734185	26	80										
COL21A1	81578	bcgsc.ca	37	chr6	56044578	56044578	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.043010752688172	4	1	1.06192893401015	3.53976311336717	0.861023460008232	0.569230769230769	1	0	tccttgacgtcatcttgggaTttgccatccgtaagtaccac	8	12	2	1	rs2038149	byfrequency	TCGA-OR-A5J2-01A-11D-A29I-10	TCGA-OR-A5J2-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d97c6076-7e4f-4dbe-85de-12bc0d84d8e8	367617cb-2dce-4769-bd48-49d49dd3d93a	.	COL21A1-24	NM_030820	exon3	c.A438G	p.K146K	TTGGGATTTGCCA	.	217	7	270	1	T|0.330;C|0.670	0	0	0	0	0	C	56044578	T	C	56044578	2	2	2	1	0	0	0	0	0	0	0	1	3686	1490	52	4		4	COL21A1	6	56044578	Silent	SNP	T	TCGA-OR-A5J2-01A-11D-A29I-10	3663696	56044578	115070489	27	81										
EEF1A1	1915	bcgsc.ca	37	chr6	74227973	74227973	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.043010752688172	4	1	1.06192893401015	3.53976311336717	0.861023460008232	0.569230769230769	1	0	gcgcttatttggcctggatgGttcaggataatcaccttgga	12	8	2	0	rs190893068		TCGA-OR-A5J2-01A-11D-A29I-10	TCGA-OR-A5J2-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d97c6076-7e4f-4dbe-85de-12bc0d84d8e8	367617cb-2dce-4769-bd48-49d49dd3d93a	.	EEF1A1-226	NM_001402	exon7	c.C1044A	p.N348K	TGGATGGTTCAGG	.	233	14	249	5	G|0.999;T|0.001	16393	16376	8	5	4	T	74227973	G	T	74227973	3	4	2	1	0	0	0	0	1	0	0	0	4934	1252	44	3	352	3	EEF1A1	6	74227973	Missense_Mutation	SNP	G	TCGA-OR-A5J2-01A-11D-A29I-10	18183395	74227973	96887094	28	82										
POU3F2	5454	hgsc.bcm.edu	37	chr6	99283376	99283376	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.043010752688172	4	1	1.06192893401015	3.53976311336717	0.861023460008232	0.569230769230769	1	0	gccggcgggcagccggccggTctgcaccaccacggcctgcg	16	18	1	0	rs195860		TCGA-OR-A5J2-01A-11D-A29I-10	TCGA-OR-A5J2-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d97c6076-7e4f-4dbe-85de-12bc0d84d8e8	367617cb-2dce-4769-bd48-49d49dd3d93a	.	POU3F2-90	NM_005604	exon1	c.T627G	p.G209G	GGCCGGTCTGCAC	.	7	7	0	0	T|0.089;G|0.911	0	0	0	0	0	G	99283376	T	G	99283376	2	3	2	1	0	0	0	0	0	0	0	1	12304	1654	58	5		5	POU3F2	6	99283376	Silent	SNP	T	TCGA-OR-A5J2-01A-11D-A29I-10	25055403	99283376	71831691	29	83										
HIVEP2	3097	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	143095218	143095218	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.043010752688172	4	1	1.06192893401015	3.53976311336717	0.861023460008232	0.569230769230769	1	0	gaaagagaaaccacaaggtaTacatggatatggccgctccc	10	10	0	1	novel		TCGA-OR-A5J2-01A-11D-A29I-10	TCGA-OR-A5J2-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d97c6076-7e4f-4dbe-85de-12bc0d84d8e8	367617cb-2dce-4769-bd48-49d49dd3d93a	.	HIVEP2-95	NM_006734	exon5	c.A658G	p.I220V	AAGGTATACATGG	.	118	82	139	0	.	1	0	1	0	0	C	143095218	T	C	143095218	3	2	2	1	0	0	0	0	1	0	0	0	7208	1406	49	4	6706	4	HIVEP2	6	143095218	Missense_Mutation	SNP	T	TCGA-OR-A5J2-01A-11D-A29I-10	43811842	143095218	28019849	30	84										
SASH1	23328	bcgsc.ca	37	chr6	148792617	148792617	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.043010752688172	4	1	1.06192893401015	3.53976311336717	0.861023460008232	0.569230769230769	1	0	ttccgaaagaaccagaaaggAataatgagacagacttcaaa	8	7	1	4	rs1883625	byfrequency	TCGA-OR-A5J2-01A-11D-A29I-10	TCGA-OR-A5J2-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d97c6076-7e4f-4dbe-85de-12bc0d84d8e8	367617cb-2dce-4769-bd48-49d49dd3d93a	.	SASH1-90	NM_015278	exon6	c.A492G	p.G164G	GAAAGGAATAATG	.	246	7	257	1	A|0.811;G|0.189	5	5	0	0	0	G	148792617	A	G	148792617	2	3	2	1	0	0	0	0	0	0	0	1	13883	233	9	4		4	SASH1	6	148792617	Silent	SNP	A	TCGA-OR-A5J2-01A-11D-A29I-10	5697399	148792617	22322450	31	85										
PION	54103	broad.mit.edu	37	chr7	77011934	77011934	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.043010752688172	4	1	1.06192893401015	3.53976311336717	0.861023460008232	0.569230769230769	1	0	agatggttctctggaagaggAtgactttcaatatgtgggta	13	4	2	3	rs112297229	alternate_allele	TCGA-OR-A5J2-01A-11D-A29I-10	TCGA-OR-A5J2-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d97c6076-7e4f-4dbe-85de-12bc0d84d8e8	367617cb-2dce-4769-bd48-49d49dd3d93a	.	PION-514	NM_017439	exon7	c.T483C	p.H161H	AAGAGGATGACTT	.	121	4	96	1	A|0.999;T|0.001	4	4	0	0	0	G	77011934	A	G	77011934	2	3	2	1	0	0	0	0	0	0	0	1	11963	330	12	4		4	PION	7	77011934	Silent	SNP	A	TCGA-OR-A5J2-01A-11D-A29I-10		77011934	82126729	32	86										
SEMA3E	9723	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	83032010	83032010	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.043010752688172	4	1	1.06192893401015	3.53976311336717	0.861023460008232	0.569230769230769	1	0	ccagtggtattcaggtccttCcttatgtgcatatggtccgt	10	10	1	0	novel		TCGA-OR-A5J2-01A-11D-A29I-10	TCGA-OR-A5J2-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d97c6076-7e4f-4dbe-85de-12bc0d84d8e8	367617cb-2dce-4769-bd48-49d49dd3d93a	.	SEMA3E-93	NM_012431	exon10	c.G1081A	p.E361K	GTCCTTCCTTATG	.	169	25	117	1	.	0	0	0	0	0	T	83032010	C	T	83032010	3	4	2	1	0	0	0	0	1	0	0	0	14063	864	30	3	1278	3	SEMA3E	7	83032010	Missense_Mutation	SNP	C	TCGA-OR-A5J2-01A-11D-A29I-10	6020076	83032010	76106653	33	87										
GAL3ST4	79690	broad.mit.edu	37	chr7	99757680	99757680	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.043010752688172	4	1	1.06192893401015	3.53976311336717	0.861023460008232	0.569230769230769	1	0	cattcctcttggtcttggggGctcaatccactccgaagtat	9	12	3	0	novel		TCGA-OR-A5J2-01A-11D-A29I-10	TCGA-OR-A5J2-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d97c6076-7e4f-4dbe-85de-12bc0d84d8e8	367617cb-2dce-4769-bd48-49d49dd3d93a	.	GAL3ST4-47	NM_024637	exon4	c.C1332A	p.S444R	TTGGGGGCTCAAT	.	123	10	116	1	.	0	0	0	0	0	T	99757680	G	T	99757680	3	4	2	1	0	0	0	0	1	0	0	0	6220	1194	42	3	132	3	GAL3ST4	7	99757680	Missense_Mutation	SNP	G	TCGA-OR-A5J2-01A-11D-A29I-10	16725670	99757680	59380983	34	88										
SPDYE3	441272	bcgsc.ca	37	chr7	99917416	99917416	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.043010752688172	4	1	1.06192893401015	3.53976311336717	0.861023460008232	0.569230769230769	1	0	tgcagggcttgggtttccccGgaggagttggaggaggtggg	21	6	0	0	rs112622797	byfrequency	TCGA-OR-A5J2-01A-11D-A29I-10	TCGA-OR-A5J2-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d97c6076-7e4f-4dbe-85de-12bc0d84d8e8	367617cb-2dce-4769-bd48-49d49dd3d93a	.	SPDYE3-22	NM_001004351	exon9	c.G1575A	p.P525P	TTCCCCGGAGGAG	.	113	7	75	1	G|0.905;A|0.095	32	21	11	0	0	A	99917416	G	A	99917416	2	1	2	1	0	0	0	0	0	0	0	1	15067	1103	39	1		1	SPDYE3	7	99917416	Silent	SNP	G	TCGA-OR-A5J2-01A-11D-A29I-10	159736	99917416	59221247	35	89										
RELN	5649	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	103276868	103276868	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.043010752688172	4	1	1.06192893401015	3.53976311336717	0.861023460008232	0.569230769230769	1	0	cagaaataaacattgggaatGtctgggatgccatctcacaa	9	8	2	1	novel		TCGA-OR-A5J2-01A-11D-A29I-10	TCGA-OR-A5J2-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d97c6076-7e4f-4dbe-85de-12bc0d84d8e8	367617cb-2dce-4769-bd48-49d49dd3d93a	.	RELN-574	NM_173054	exon18	c.C2117T	p.T706I	GGGAATGTCTGGG	.	276	45	219	0	.	0	0	0	0	0	A	103276868	G	A	103276868	3	1	2	1	0	0	0	0	1	0	0	0	13255	1377	48	3	8457	3	RELN	7	103276868	Missense_Mutation	SNP	G	TCGA-OR-A5J2-01A-11D-A29I-10	3359452	103276868	55861795	36	90										
PODXL	5420	hgsc.bcm.edu	37	chr7	131241055	131241055	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.043010752688172	4	1	1.06192893401015	3.53976311336717	0.861023460008232	0.569230769230769	1	0	cggcgacggcgacggcgacgAcggcagcagcggcggcgttg	20	13	0	0	novel		TCGA-OR-A5J2-01A-11D-A29I-10	TCGA-OR-A5J2-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d97c6076-7e4f-4dbe-85de-12bc0d84d8e8	367617cb-2dce-4769-bd48-49d49dd3d93a	.	PODXL-136	NM_001018111	exon1	c.T64C	p.S22P	GCGACGACGGCAG	.	21	5	0	0	.	10	10	0	0	0	G	131241055	A	G	131241055	3	3	2	1	0	0	0	0	1	0	0	0	12209	275	10	4	1648	4	PODXL	7	131241055	Missense_Mutation	SNP	A	TCGA-OR-A5J2-01A-11D-A29I-10	27964187	131241055	27897608	37	91										
DLGAP2	9228	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr8	1645390	1645390	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.043010752688172	4	1	1.06192893401015	3.53976311336717	0.861023460008232	0.569230769230769	1	0	ctgcagctctccattgaggaCgtcagcatgaagttcgacga	11	11	2	2	novel		TCGA-OR-A5J2-01A-11D-A29I-10	TCGA-OR-A5J2-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d97c6076-7e4f-4dbe-85de-12bc0d84d8e8	367617cb-2dce-4769-bd48-49d49dd3d93a	.	DLGAP2-22	NM_004745	exon11	c.C2634T	p.D878D	TGAGGACGTCAGC	.	107	92	152	0	.	0	0	0	0	0	T	1645390	C	T	1645390	2	4	2	1	0	0	0	0	0	0	0	1	4571	535	19	1		1	DLGAP2	8	1645390	Silent	SNP	C	TCGA-OR-A5J2-01A-11D-A29I-10		1645390	144718632	38	92										
BHLHE22	27319	bcgsc.ca	37	chr8	65493429	65493429	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.043010752688172	4	1	1.06192893401015	3.53976311336717	0.861023460008232	0.569230769230769	1	0	agagcctgagcgcctccaccTccaagcgcttggaagcggct	12	15	0	2	rs7016250	byfrequency	TCGA-OR-A5J2-01A-11D-A29I-10	TCGA-OR-A5J2-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d97c6076-7e4f-4dbe-85de-12bc0d84d8e8	367617cb-2dce-4769-bd48-49d49dd3d93a	.	BHLHE22-90	NM_152414	exon1	c.T82G	p.S28A	TCCACCTCCAAGC	.	26	26	6	0	T|0.528;G|0.472	0	0	0	0	0	G	65493429	T	G	65493429	3	3	2	1	0	0	0	0	1	0	0	0	1422	1551	54	5	84	5	BHLHE22	8	65493429	Missense_Mutation	SNP	T	TCGA-OR-A5J2-01A-11D-A29I-10	63848039	65493429	80870593	39	93										
NFKB2	4791	hgsc.bcm.edu	37	chr10	104159196	104159196	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.043010752688172	4	1	1.06192893401015	3.53976311336717	0.861023460008232	0.569230769230769	1	0	ggggaggaagccgcggagccAagcgccccctccaggacccc	15	17	0	0	rs4919633	byfrequency	TCGA-OR-A5J2-01A-11D-A29I-10	TCGA-OR-A5J2-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d97c6076-7e4f-4dbe-85de-12bc0d84d8e8	367617cb-2dce-4769-bd48-49d49dd3d93a	.	NFKB2-522	NM_001077494	exon13	c.A1269G	p.P423P	GGAGCCAAGCGCC	.	14	14	0	0	A|0.009;G|0.991	23	0	23	0	0	G	104159196	A	G	104159196	2	3	2	1	0	0	0	0	0	0	0	1	10405	117	5	4		4	NFKB2	10	104159196	Silent	SNP	A	TCGA-OR-A5J2-01A-11D-A29I-10		104159196	31375551	40	94										
TAF5	6877	hgsc.bcm.edu	37	chr10	105128134	105128134	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.043010752688172	4	1	1.06192893401015	3.53976311336717	0.861023460008232	0.569230769230769	1	0	tggaggaggcagtggcgggcTccggagccccgggagaggtg	22	9	0	1	rs10883859	byfrequency	TCGA-OR-A5J2-01A-11D-A29I-10	TCGA-OR-A5J2-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d97c6076-7e4f-4dbe-85de-12bc0d84d8e8	367617cb-2dce-4769-bd48-49d49dd3d93a	.	TAF5-92	NM_006951	exon1	c.T388G	p.S130A	GCGGGCTCCGGAG	.	24	8	1	0	T|0.623;G|0.377	0	0	0	0	0	G	105128134	T	G	105128134	3	3	2	1	0	0	0	0	1	0	0	0	15565	1551	54	5	390	5	TAF5	10	105128134	Missense_Mutation	SNP	T	TCGA-OR-A5J2-01A-11D-A29I-10	968938	105128134	30406613	41	95										
GFRA1	2674	broad.mit.edu;bcgsc.ca	37	chr10	117884831	117884831	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.043010752688172	4	1	1.06192893401015	3.53976311336717	0.861023460008232	0.569230769230769	1	0	gcacgatggtctgtcgcctcCgctctgtgcaggcgatgtcc	13	14	2	0	novel		TCGA-OR-A5J2-01A-11D-A29I-10	TCGA-OR-A5J2-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d97c6076-7e4f-4dbe-85de-12bc0d84d8e8	367617cb-2dce-4769-bd48-49d49dd3d93a	.	GFRA1-93	NM_005264	exon6	c.G671A	p.R224Q	CGCCTCCGCTCTG	.	228	10	140	0	.	0	0	0	0	0	T	117884831	C	T	117884831	3	4	2	1	0	0	0	0	1	0	0	0	6367	652	23	1	750	1	GFRA1	10	117884831	Missense_Mutation	SNP	C	TCGA-OR-A5J2-01A-11D-A29I-10	12756697	117884831	17649916	42	96										
MUC2	4583	broad.mit.edu	37	chr11	1092940	1092940	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.043010752688172	4	1	1.06192893401015	3.53976311336717	0.861023460008232	0.569230769230769	1	0	ccccaacatcgacacccatcAccaccaccactacggtgacc	4	21	1	1	novel		TCGA-OR-A5J2-01A-11D-A29I-10	TCGA-OR-A5J2-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d97c6076-7e4f-4dbe-85de-12bc0d84d8e8	367617cb-2dce-4769-bd48-49d49dd3d93a	.	MUC2-90	NM_002457	exon30	c.A4759T	p.T1587S	CCCATCACCACCA	.	97	7	99	0	.	0	0	0	0	0	T	1092940	A	T	1092940	3	4	2	1	0	0	0	0	1	0	0	0	10003	159	6	5	4877	5	MUC2	11	1092940	Missense_Mutation	SNP	A	TCGA-OR-A5J2-01A-11D-A29I-10		1092940	133913576	43	97										
GAL3ST3	89792	hgsc.bcm.edu	37	chr11	65810209	65810209	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.043010752688172	4	1	1.06192893401015	3.53976311336717	0.861023460008232	0.569230769230769	1	0	accttgcggctgggctgccaCggctgcagctgcttggtgcg	16	13	0	0	rs61895584	byfrequency	TCGA-OR-A5J2-01A-11D-A29I-10	TCGA-OR-A5J2-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d97c6076-7e4f-4dbe-85de-12bc0d84d8e8	367617cb-2dce-4769-bd48-49d49dd3d93a	.	GAL3ST3-91	NM_033036	exon3	c.G1065A	p.P355P	CTGCCACGGCTGC	.	4	4	0	0	C|0.233;T|0.767	0	0	0	0	0	T	65810209	C	T	65810209	2	4	2	1	0	0	0	0	0	0	0	1	6219	523	19	1		1	GAL3ST3	11	65810209	Silent	SNP	C	TCGA-OR-A5J2-01A-11D-A29I-10	64717269	65810209	69196307	44	98										
LRP6	4040	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr12	12301919	12301919	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.043010752688172	4	1	1.06192893401015	3.53976311336717	0.861023460008232	0.569230769230769	1	0	ggctcgaggtctgtcctgctCgcctttcagcaccactccaa	9	16	2	0	novel		TCGA-OR-A5J2-01A-11D-A29I-10	TCGA-OR-A5J2-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d97c6076-7e4f-4dbe-85de-12bc0d84d8e8	367617cb-2dce-4769-bd48-49d49dd3d93a	.	LRP6-661	NM_002336	exon14	c.G3163A	p.E1055K	CCTGCTCGCCTTT	.	205	12	150	0	.	12	11	1	0	0	T	12301919	C	T	12301919	3	4	2	1	0	0	0	0	1	0	0	0	8989	893	31	1	1718	1	LRP6	12	12301919	Missense_Mutation	SNP	C	TCGA-OR-A5J2-01A-11D-A29I-10		12301919	121549976	45	99										
KRT2	3849	hgsc.bcm.edu	37	chr12	53045640	53045641	+	In_Frame_Ins	INS	-	-	AGCCGCTGCCGCCTCCAA													0.043010752688172	4	1	1.06192893401015	3.53976311336717	0.861023460008232	0.569230769230769	1	0	aaagctgctgccgcctccaaINSaaccacctcctctgccacca					novel		TCGA-OR-A5J2-01A-11D-A29I-10	TCGA-OR-A5J2-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d97c6076-7e4f-4dbe-85de-12bc0d84d8e8	367617cb-2dce-4769-bd48-49d49dd3d93a	.	KRT2-92	NM_000423	exon1	c.287_288insTTGGAGGCGGCAGCGGCT	p.F96delinsFGGGSGF	CCTCCAAAACCAC	.	161	54	76	0	.	0	0	0	0	0	AGCCGCTGCCGCCTCCAA	53045641	-	AGCCGCTGCCGCCTCCAA	53045640	7	5	2	1	0	1	1	0	0	0	0	0	8478	14	1	0	1668	0	KRT2	12	53045640	In_Frame_Ins	INS	-	TCGA-OR-A5J2-01A-11D-A29I-10	40743721	53045640	80806255	46	100										
KIF5A	3798	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	57957244	57957244	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.043010752688172	4	1	1.06192893401015	3.53976311336717	0.861023460008232	0.569230769230769	1	0	gaagccatatgtttttgaccGtgtattccccccaaacacga	7	12	0	1	novel		TCGA-OR-A5J2-01A-11D-A29I-10	TCGA-OR-A5J2-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d97c6076-7e4f-4dbe-85de-12bc0d84d8e8	367617cb-2dce-4769-bd48-49d49dd3d93a	.	KIF5A-517	NM_004984	exon2	c.G152A	p.R51H	TTGACCGTGTATT	.	256	32	170	1	.	0	0	0	0	0	A	57957244	G	A	57957244	3	1	2	1	0	0	0	0	1	0	0	0	8326	1145	40	1	158	1	KIF5A	12	57957244	Missense_Mutation	SNP	G	TCGA-OR-A5J2-01A-11D-A29I-10	4911604	57957244	75894651	47	101										
BBS10	79738	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr12	76741456	76741459	+	Frame_Shift_Del	DEL	TCTG	TCTG	-													0.043010752688172	4	1	1.06192893401015	3.53976311336717	0.861023460008232	0.569230769230769	1	0	cacatcaaaggatccttttcTctgtctgtgattgcatgaag					novel		TCGA-OR-A5J2-01A-11D-A29I-10	TCGA-OR-A5J2-10A-01D-A29L-10	TCTG	TCTG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d97c6076-7e4f-4dbe-85de-12bc0d84d8e8	367617cb-2dce-4769-bd48-49d49dd3d93a	.	BBS10-92	NM_024685	exon2	c.306_309del	p.102_103del	CTTTTCTCTGTCT	.	110	48	58	0	.	0	0	0	0	0	-	76741459	TCTG	-	76741456	7	5	2	1	0	1	0	1	0	0	0	0	1337	1548	54	0	1866	0	BBS10	12	76741456	Frame_Shift_Del	DEL	TCTG	TCGA-OR-A5J2-01A-11D-A29I-10	18784212	76741456	57110439	48	102										
RNFT2	84900	hgsc.bcm.edu	37	chr12	117187907	117187907	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.043010752688172	4	1	1.06192893401015	3.53976311336717	0.861023460008232	0.569230769230769	1	0	caccgccagccccaccaccaTttccaccatggcggccaccg	7	22	0	0	rs111256849	byfrequency	TCGA-OR-A5J2-01A-11D-A29I-10	TCGA-OR-A5J2-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d97c6076-7e4f-4dbe-85de-12bc0d84d8e8	367617cb-2dce-4769-bd48-49d49dd3d93a	.	.	NM_001109903	exon4	c.T345C	p.H115H	CCACCATTTCCAC	.	24	9	3	0	T|0.767;C|0.233	1	1	0	0	0	C	117187907	T	C	117187907	2	2	2	1	0	0	0	0	0	0	0	1	13537	1490	52	4		4	RNFT2	12	117187907	Silent	SNP	T	TCGA-OR-A5J2-01A-11D-A29I-10	40446451	117187907	16663988	49	103										
SUGT1	10910	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr13	53237236	53237236	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.043010752688172	4	1	1.06192893401015	3.53976311336717	0.861023460008232	0.569230769230769	1	0	tttatgttttaataggctcaGaatctgaggtggtaagtcca	10	5	2	2	novel		TCGA-OR-A5J2-01A-11D-A29I-10	TCGA-OR-A5J2-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d97c6076-7e4f-4dbe-85de-12bc0d84d8e8	367617cb-2dce-4769-bd48-49d49dd3d93a	.	SUGT1-226	NM_001130912	exon8	c.G484T	p.E162X	GGCTCAGAATCTG	.	45	13	54	0	.	0	0	0	0	0	T	53237236	G	T	53237236	4	4	2	1	0	0	0	0	0	1	0	0	15406	943	33	3	514	3	SUGT1	13	53237236	Nonsense_Mutation	SNP	G	TCGA-OR-A5J2-01A-11D-A29I-10		53237236	61932642	50	104										
OR10G3	26533	bcgsc.ca	37	chr14	22038525	22038525	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.043010752688172	4	1	1.06192893401015	3.53976311336717	0.861023460008232	0.569230769230769	1	0	tacctgtcataggccattagGgtgtagaggaagcactgggt	14	7	1	1	rs11626693	byfrequency	TCGA-OR-A5J2-01A-11D-A29I-10	TCGA-OR-A5J2-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d97c6076-7e4f-4dbe-85de-12bc0d84d8e8	367617cb-2dce-4769-bd48-49d49dd3d93a	.	OR10G3-68	NM_001005465	exon1	c.C351A	p.T117T	CATTAGGGTGTAG	.	215	9	205	2	G|0.656;T|0.344	0	0	0	0	0	T	22038525	G	T	22038525	2	4	2	1	0	0	0	0	0	0	0	1	10929	1219	43	3		3	OR10G3	14	22038525	Silent	SNP	G	TCGA-OR-A5J2-01A-11D-A29I-10		22038525	85311015	51	105										
HECTD1	25831	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr14	31598273	31598273	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.043010752688172	4	1	1.06192893401015	3.53976311336717	0.861023460008232	0.569230769230769	1	0	accctacttctgtttgagggAcgttttcagcagatgaaaga	10	8	2	4	novel		TCGA-OR-A5J2-01A-11D-A29I-10	TCGA-OR-A5J2-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d97c6076-7e4f-4dbe-85de-12bc0d84d8e8	367617cb-2dce-4769-bd48-49d49dd3d93a	.	HECTD1-570	NM_015382	exon25	c.T4304A	p.V1435D	TGAGGGACGTTTT	.	217	167	261	1	.	22	5	17	0	0	T	31598273	A	T	31598273	3	4	2	1	0	0	0	0	1	0	0	0	7060	275	10	5	3604	5	HECTD1	14	31598273	Missense_Mutation	SNP	A	TCGA-OR-A5J2-01A-11D-A29I-10	9559748	31598273	75751267	52	106										
PLEK2	26499	bcgsc.ca	37	chr14	67878765	67878765	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.043010752688172	4	1	1.06192893401015	3.53976311336717	0.861023460008232	0.569230769230769	1	0	aggaagccctccttgagcacGccgtcctccatgtcgccgcc	10	18	0	1	rs115017102	byfrequency	TCGA-OR-A5J2-01A-11D-A29I-10	TCGA-OR-A5J2-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d97c6076-7e4f-4dbe-85de-12bc0d84d8e8	367617cb-2dce-4769-bd48-49d49dd3d93a	.	PLEK2-92	NM_016445	exon1	c.C12T	p.G4G	GAGCACGCCGTCC	.	27	25	11	1	G|0.976;A|0.024	12	0	12	0	0	A	67878765	G	A	67878765	2	1	2	1	0	0	0	0	0	0	0	1	12083	1074	38	1		1	PLEK2	14	67878765	Silent	SNP	G	TCGA-OR-A5J2-01A-11D-A29I-10	36280492	67878765	39470775	53	107										
SEMA6D	80031	bcgsc.ca	37	chr15	48053888	48053888	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.043010752688172	4	1	1.06192893401015	3.53976311336717	0.861023460008232	0.569230769230769	1	0	tagaatatgatggggaagaaAttagtggcctggcaagatgc	14	4	0	4	novel		TCGA-OR-A5J2-01A-11D-A29I-10	TCGA-OR-A5J2-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d97c6076-7e4f-4dbe-85de-12bc0d84d8e8	367617cb-2dce-4769-bd48-49d49dd3d93a	.	SEMA6D-138	NM_153617	exon7	c.A478G	p.I160V	GAAGAAATTAGTG	.	77	4	93	0	.	1	1	0	0	0	G	48053888	A	G	48053888	3	3	2	1	0	0	0	0	1	0	0	0	14077	101	4	4	500	4	SEMA6D	15	48053888	Missense_Mutation	SNP	A	TCGA-OR-A5J2-01A-11D-A29I-10		48053888	54477504	54	108										
TLN2	83660	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	63017231	63017231	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.043010752688172	4	1	1.06192893401015	3.53976311336717	0.861023460008232	0.569230769230769	1	0	gctctgaatacggtgcagacGcttaagaatgaactgcagga	12	8	1	4	novel		TCGA-OR-A5J2-01A-11D-A29I-10	TCGA-OR-A5J2-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d97c6076-7e4f-4dbe-85de-12bc0d84d8e8	367617cb-2dce-4769-bd48-49d49dd3d93a	.	TLN2-573	NM_015059	exon24	c.G3183A	p.T1061T	GCAGACGCTTAAG	.	43	7	45	0	.	3	3	0	0	0	A	63017231	G	A	63017231	2	1	2	1	0	0	0	0	0	0	0	1	15985	1074	38	1		1	TLN2	15	63017231	Silent	SNP	G	TCGA-OR-A5J2-01A-11D-A29I-10	14963343	63017231	39514161	55	109										
KBTBD13	390594	hgsc.bcm.edu	37	chr15	65369395	65369395	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.043010752688172	4	1	1.06192893401015	3.53976311336717	0.861023460008232	0.569230769230769	1	0	ggaggacgagctgctgcaggCcgtggagtgcgccgccttcc	17	13	0	0	rs2919358	byfrequency	TCGA-OR-A5J2-01A-11D-A29I-10	TCGA-OR-A5J2-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d97c6076-7e4f-4dbe-85de-12bc0d84d8e8	367617cb-2dce-4769-bd48-49d49dd3d93a	.	.	NM_001101362	exon1	c.C242T	p.A81V	TGCAGGCCGTGGA	.	7	7	2	0	C|0.452;T|0.548	0	0	0	0	0	T	65369395	C	T	65369395	3	4	2	1	0	0	0	0	1	0	0	0	8013	739	26	3	244	3	KBTBD13	15	65369395	Missense_Mutation	SNP	C	TCGA-OR-A5J2-01A-11D-A29I-10	2352164	65369395	37161997	56	110										
FAM173A	65990	broad.mit.edu	37	chr16	771612	771612	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.043010752688172	4	1	1.06192893401015	3.53976311336717	0.861023460008232	0.569230769230769	1	0	gtccaggtgccctacgtcggCgcgagcgcgcggcaggtgga	18	13	0	0	novel		TCGA-OR-A5J2-01A-11D-A29I-10	TCGA-OR-A5J2-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d97c6076-7e4f-4dbe-85de-12bc0d84d8e8	367617cb-2dce-4769-bd48-49d49dd3d93a	.	FAM173A-91	NM_001271285	exon2	c.C177A	p.G59G	CGTCGGCGCGAGC	.	57	8	24	1	.	3	3	0	0	0	A	771612	C	A	771612	2	1	2	1	0	0	0	0	0	0	0	1	5509	755	27	2		2	FAM173A	16	771612	Silent	SNP	C	TCGA-OR-A5J2-01A-11D-A29I-10		771612	89583141	57	111										
NDUFB10	4716	broad.mit.edu	37	chr16	2011627	2011645	+	Frame_Shift_Del	DEL	CCAGGACCGCTGTGCGTGC	CCAGGACCGCTGTGCGTGC	-													0.043010752688172	4	1	1.06192893401015	3.53976311336717	0.861023460008232	0.569230769230769	1	0	acccaggtggccaaggcctaCcaggaccgctgtgcgtgccc					novel		TCGA-OR-A5J2-01A-11D-A29I-10	TCGA-OR-A5J2-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d97c6076-7e4f-4dbe-85de-12bc0d84d8e8	367617cb-2dce-4769-bd48-49d49dd3d93a	.	NDUFB10-90	NM_004548	exon3	c.399_409del	p.133_137del	GGCCTACCAGGAC	.	15	4	16	0	.	0	0	0	0	0	-	2011645	CCAGGACCGCTGTGCGTGC	-	2011627	7	5	2	1	0	1	0	1	0	0	0	0	10308	518	18	0	409	0	NDUFB10	16	2011627	Frame_Shift_Del	DEL	CCAGGACCGCTGTGCGTGC	TCGA-OR-A5J2-01A-11D-A29I-10	1240015	2011627	88343126	58	112										
SLC9A3R2	9351	broad.mit.edu	37	chr16	2086730	2086730	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.043010752688172	4	1	1.06192893401015	3.53976311336717	0.861023460008232	0.569230769230769	1	0	tacatgctggtggcggcaggTgaacgggcagaatgtggagg	19	6	0	2	novel		TCGA-OR-A5J2-01A-11D-A29I-10	TCGA-OR-A5J2-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d97c6076-7e4f-4dbe-85de-12bc0d84d8e8	367617cb-2dce-4769-bd48-49d49dd3d93a	.	SLC9A3R2-23	NM_004785	exon4	c.T596G	p.V199G	GGCAGGTGAACGG	.	70	24	56	10	.	0	0	0	0	0	G	2086730	T	G	2086730	3	3	2	1	0	0	0	0	1	0	0	0	14750	1710	59	5	610	5	SLC9A3R2	16	2086730	Missense_Mutation	SNP	T	TCGA-OR-A5J2-01A-11D-A29I-10	75103	2086730	88268023	59	113										
ANKS3	124401	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr16	4747041	4747041	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.043010752688172	4	1	1.06192893401015	3.53976311336717	0.861023460008232	0.569230769230769	1	0	cccgcaggctaggtctcccgCcacttcttcccgttcagcac	8	19	3	0	novel		TCGA-OR-A5J2-01A-11D-A29I-10	TCGA-OR-A5J2-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d97c6076-7e4f-4dbe-85de-12bc0d84d8e8	367617cb-2dce-4769-bd48-49d49dd3d93a	.	ANKS3-90	NM_133450	exon17	c.G1959C	p.W653C	CTCCCGCCACTTC	.	69	48	96	1	.	12	1	11	0	0	G	4747041	C	G	4747041	3	3	2	1	0	0	0	0	1	0	0	0	690	740	26	3	15	3	ANKS3	16	4747041	Missense_Mutation	SNP	C	TCGA-OR-A5J2-01A-11D-A29I-10	2660311	4747041	85607712	60	114										
CLEC16A	23274	hgsc.bcm.edu	37	chr16	11272460	11272460	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.043010752688172	4	1	1.06192893401015	3.53976311336717	0.861023460008232	0.569230769230769	1	0	cgcagcctcaccggcatgccCccgctgtccacgccggctgc	11	21	1	0	novel		TCGA-OR-A5J2-01A-11D-A29I-10	TCGA-OR-A5J2-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d97c6076-7e4f-4dbe-85de-12bc0d84d8e8	367617cb-2dce-4769-bd48-49d49dd3d93a	.	CLEC16A-92	NM_015226	exon23	c.C3075T	p.P1025P	CATGCCCCCGCTG	.	29	22	2	0	.	18	1	17	0	0	T	11272460	C	T	11272460	2	4	2	1	0	0	0	0	0	0	0	1	3506	610	22	3		3	CLEC16A	16	11272460	Silent	SNP	C	TCGA-OR-A5J2-01A-11D-A29I-10	6525419	11272460	79082293	61	115										
CCDC102A	92922	hgsc.bcm.edu	37	chr16	57562804	57562804	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.043010752688172	4	1	1.06192893401015	3.53976311336717	0.861023460008232	0.569230769230769	1	0	ggcagtgcagtccgaccaccGgcgcatggtcttctccatct	11	15	3	0	rs12935069		TCGA-OR-A5J2-01A-11D-A29I-10	TCGA-OR-A5J2-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d97c6076-7e4f-4dbe-85de-12bc0d84d8e8	367617cb-2dce-4769-bd48-49d49dd3d93a	.	CCDC102A-91	NM_033212	exon2	c.C286T	p.R96W	ACCACCGGCGCAT	.	9	9	0	0	G|0.001;A|0.999	1	0	1	0	0	A	57562804	G	A	57562804	3	1	2	1	0	0	0	0	1	0	0	0	2742	1115	39	1	1398	1	CCDC102A	16	57562804	Missense_Mutation	SNP	G	TCGA-OR-A5J2-01A-11D-A29I-10	46290344	57562804	32791949	62	116										
ZFPM1	161882	hgsc.bcm.edu	37	chr16	88599696	88599697	+	Frame_Shift_Del	DEL	GA	GA	-													0.043010752688172	4	1	1.06192893401015	3.53976311336717	0.861023460008232	0.569230769230769	1	0	ccaacggagaggccagagcgGagcctctggcccagaatgga					rs67549438	alternate_allele	TCGA-OR-A5J2-01A-11D-A29I-10	TCGA-OR-A5J2-10A-01D-A29L-10	GA	GA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d97c6076-7e4f-4dbe-85de-12bc0d84d8e8	367617cb-2dce-4769-bd48-49d49dd3d93a	.	ZFPM1-90	NM_153813	exon10	c.1330_1331del	p.444_444del	AGAGCGGAGCCTC	.	19	13	0	0	.	0	0	0	0	0	-	88599697	GA	-	88599696	7	5	2	1	0	1	0	1	0	0	0	0	17694	1175	41	0	1368	0	ZFPM1	16	88599696	Frame_Shift_Del	DEL	GA	TCGA-OR-A5J2-01A-11D-A29I-10	31036892	88599696	1755057	63	117	3	4								
ZFPM1	161882	hgsc.bcm.edu	37	chr16	88599697	88599705	+	In_Frame_Del	DEL	AGCCTCTGG	AGCCTCTGG	-													0.043010752688172	4	1	1.06192893401015	3.53976311336717	0.861023460008232	0.569230769230769	1	0	caacggagaggccagagcggAgcctctggcccagaatggag					novel		TCGA-OR-A5J2-01A-11D-A29I-10	TCGA-OR-A5J2-10A-01D-A29L-10	AGCCTCTGG	AGCCTCTGG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d97c6076-7e4f-4dbe-85de-12bc0d84d8e8	367617cb-2dce-4769-bd48-49d49dd3d93a	.	ZFPM1-90	NM_153813	exon10	c.1331_1339del	p.444_447del	GAGCGGAGCCTCT	.	18	0	0	0	.	0	0	0	0	0	-	88599705	AGCCTCTGG	-	88599697	7	5	2	1	0	1	0	1	0	0	0	0	17694	304	11	0	1369	0	ZFPM1	16	88599697	In_Frame_Del	DEL	AGCCTCTGG	TCGA-OR-A5J2-01A-11D-A29I-10	1	88599697	1755056	64	118	3	4								
ZFPM1	161882	hgsc.bcm.edu	37	chr16	88599701	88599701	+	Frame_Shift_Del	DEL	T	T	-													0.043010752688172	4	1	1.06192893401015	3.53976311336717	0.861023460008232	0.569230769230769	1	0	ggagaggccagagcggagccTctggcccagaatggaggcag					novel		TCGA-OR-A5J2-01A-11D-A29I-10	TCGA-OR-A5J2-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d97c6076-7e4f-4dbe-85de-12bc0d84d8e8	367617cb-2dce-4769-bd48-49d49dd3d93a	.	ZFPM1-90	NM_153813	exon10	c.1335delT	p.P445fs	GGAGCCTCTGGCC	.	17	14	0	0	.	0	0	0	0	0	-	88599701	T	-	88599701	7	5	2	1	0	1	0	1	0	0	0	0	17694	1538	54	0	1373	0	ZFPM1	16	88599701	Frame_Shift_Del	DEL	T	TCGA-OR-A5J2-01A-11D-A29I-10	4	88599701	1755052	65	119	3	4								
ZFPM1	161882	hgsc.bcm.edu	37	chr16	88599703	88599705	+	In_Frame_Del	DEL	TGG	TGG	-													0.043010752688172	4	1	1.06192893401015	3.53976311336717	0.861023460008232	0.569230769230769	1	0	agaggccagagcggagcctcTggcccagaatggaggcagca					novel		TCGA-OR-A5J2-01A-11D-A29I-10	TCGA-OR-A5J2-10A-01D-A29L-10	TGG	TGG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d97c6076-7e4f-4dbe-85de-12bc0d84d8e8	367617cb-2dce-4769-bd48-49d49dd3d93a	.	ZFPM1-90	NM_153813	exon10	c.1337_1339del	p.446_447del	AGCCTCTGGCCCA	.	17	14	0	0	.	0	0	0	0	0	-	88599705	TGG	-	88599703	7	5	2	1	0	1	0	1	0	0	0	0	17694	1580	55	0	1375	0	ZFPM1	16	88599703	In_Frame_Del	DEL	TGG	TCGA-OR-A5J2-01A-11D-A29I-10	2	88599703	1755050	66	120	3	4								
C16orf3	750	bcgsc.ca	37	chr16	90095573	90095573	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.043010752688172	4	1	1.06192893401015	3.53976311336717	0.861023460008232	0.569230769230769	1	0	gcagcctacggggcaggctaCggggcagcttacggggcagg	19	11	0	0	rs77382359		TCGA-OR-A5J2-01A-11D-A29I-10	TCGA-OR-A5J2-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d97c6076-7e4f-4dbe-85de-12bc0d84d8e8	367617cb-2dce-4769-bd48-49d49dd3d93a	.	C16orf3-90	NM_001214	exon1	c.G178A	p.V60I	AGGCTACGGGGCA	.	48	13	59	0	C|0.500;T|0.500	0	0	0	0	0	T	90095573	C	T	90095573	3	4	2	1	0	0	0	0	1	0	0	0	1816	536	19	1	179	1	C16orf3	16	90095573	Missense_Mutation	SNP	C	TCGA-OR-A5J2-01A-11D-A29I-10	1495870	90095573	259180	67	121										
TP53	7157	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr17	7578415	7578428	+	Frame_Shift_Del	DEL	ACCTCCGTCATGTG	ACCTCCGTCATGTG	-													0.043010752688172	4	1	1.06192893401015	3.53976311336717	0.861023460008232	0.569230769230769	1	0	ggtgggggcagcgcctcacaAcctccgtcatgtgctgtgac					novel		TCGA-OR-A5J2-01A-11D-A29I-10	TCGA-OR-A5J2-10A-01D-A29L-10	ACCTCCGTCATGTG	ACCTCCGTCATGTG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d97c6076-7e4f-4dbe-85de-12bc0d84d8e8	367617cb-2dce-4769-bd48-49d49dd3d93a	.	TP53-70225	NM_000546	exon5	c.502_515del	p.168_172del	CTCACAACCTCCG	.	55	26	111	0	.	0	0	0	0	0	-	7578428	ACCTCCGTCATGTG	-	7578415	7	5	2	1	0	1	0	1	0	0	0	0	16419	43	2	0	783	0	TP53	17	7578415	Frame_Shift_Del	DEL	ACCTCCGTCATGTG	TCGA-OR-A5J2-01A-11D-A29I-10		7578415	73616795	68	122										
SARM1	23098	hgsc.bcm.edu	37	chr17	26699121	26699121	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.043010752688172	4	1	1.06192893401015	3.53976311336717	0.861023460008232	0.569230769230769	1	0	cgccatgtcgggcccacggcGgggcgccgagcggctggcgg	20	15	0	0	rs7212814		TCGA-OR-A5J2-01A-11D-A29I-10	TCGA-OR-A5J2-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d97c6076-7e4f-4dbe-85de-12bc0d84d8e8	367617cb-2dce-4769-bd48-49d49dd3d93a	.	.	NM_015077	exon1	c.G68C	p.R23P	CACGGCGGGGCGC	.	8	8	0	0	G|0.001;C|0.999	4	0	4	0	0	C	26699121	G	C	26699121	3	2	2	1	0	0	0	0	1	0	0	0	13877	1116	39	2	70	2	SARM1	17	26699121	Missense_Mutation	SNP	G	TCGA-OR-A5J2-01A-11D-A29I-10	19120706	26699121	54496089	69	123										
SEZ6	124925	ucsc.edu	37	chr17	27286750	27286750	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.043010752688172	4	1	1.06192893401015	3.53976311336717	0.861023460008232	0.569230769230769	1	0	tctgtctcattccactggggGtcgtgggggtcaacacactc	12	12	3	0	rs9907950	byfrequency	TCGA-OR-A5J2-01A-11D-A29I-10	TCGA-OR-A5J2-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d97c6076-7e4f-4dbe-85de-12bc0d84d8e8	367617cb-2dce-4769-bd48-49d49dd3d93a	.	SEZ6-90	NM_001098635	exon8	c.C1737T	p.D579D	CTGGGGGTCGTGG	.	47	4	70	1	G|0.841;A|0.159	0	0	0	0	0	A	27286750	G	A	27286750	2	1	2	1	0	0	0	0	0	0	0	1	14177	1252	44	3		3	SEZ6	17	27286750	Silent	SNP	G	TCGA-OR-A5J2-01A-11D-A29I-10	587629	27286750	53908460	70	124										
LAMA3	3909	ucsc.edu;bcgsc.ca	37	chr18	21464756	21464756	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.043010752688172	4	1	1.06192893401015	3.53976311336717	0.861023460008232	0.569230769230769	1	0	gctttgccactggctgtgtgGtgaatgggggagacgtgcgg	19	7	0	2	novel		TCGA-OR-A5J2-01A-11D-A29I-10	TCGA-OR-A5J2-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d97c6076-7e4f-4dbe-85de-12bc0d84d8e8	367617cb-2dce-4769-bd48-49d49dd3d93a	.	LAMA3-100	NM_001127717	exon41	c.G5242T	p.V1748L	TGTGTGGTGAATG	.	43	4	46	0	.	0	0	0	0	0	T	21464756	G	T	21464756	3	4	2	1	0	0	0	0	1	0	0	0	8629	1261	44	3	5579	3	LAMA3	18	21464756	Missense_Mutation	SNP	G	TCGA-OR-A5J2-01A-11D-A29I-10		21464756	56612492	71	125										
ARID3A	1820	hgsc.bcm.edu	37	chr19	929678	929678	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.043010752688172	4	1	1.06192893401015	3.53976311336717	0.861023460008232	0.569230769230769	1	0	gacgaggacagagagcccgaGagtgcccggatgcagcgggc	18	11	0	2	rs3826948		TCGA-OR-A5J2-01A-11D-A29I-10	TCGA-OR-A5J2-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d97c6076-7e4f-4dbe-85de-12bc0d84d8e8	367617cb-2dce-4769-bd48-49d49dd3d93a	.	ARID3A-90	NM_005224	exon2	c.G150A	p.E50E	GCCCGAGAGTGCC	.	5	5	0	0	T|0.495;C|0.504	1	0	1	0	0	A	929678	G	A	929678	2	1	2	1	0	0	0	0	0	0	0	1	916	933	33	3		3	ARID3A	19	929678	Silent	SNP	G	TCGA-OR-A5J2-01A-11D-A29I-10		929678	58199305	72	126										
ARID3A	1820	hgsc.bcm.edu	37	chr19	929753	929753	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.043010752688172	4	1	1.06192893401015	3.53976311336717	0.861023460008232	0.569230769230769	1	0	gctgcgggcctgggacacccAgccagccccggcggctctga	15	17	1	1	rs1799595		TCGA-OR-A5J2-01A-11D-A29I-10	TCGA-OR-A5J2-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d97c6076-7e4f-4dbe-85de-12bc0d84d8e8	367617cb-2dce-4769-bd48-49d49dd3d93a	.	ARID3A-90	NM_005224	exon2	c.A225G	p.P75P	ACACCCAGCCAGC	.	12	12	0	0	A|0.114;G|0.886	2	0	2	0	0	G	929753	A	G	929753	2	3	2	1	0	0	0	0	0	0	0	1	916	175	7	4		4	ARID3A	19	929753	Silent	SNP	A	TCGA-OR-A5J2-01A-11D-A29I-10	75	929753	58199230	73	127										
PDE4C	5143	ucsc.edu	37	chr19	18331699	18331699	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.043010752688172	4	1	1.06192893401015	3.53976311336717	0.861023460008232	0.569230769230769	1	0	tttacctgcaggagggagctGattgctggatgaagggtttc	15	6	0	2	novel		TCGA-OR-A5J2-01A-11D-A29I-10	TCGA-OR-A5J2-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d97c6076-7e4f-4dbe-85de-12bc0d84d8e8	367617cb-2dce-4769-bd48-49d49dd3d93a	.	PDE4C-94	NM_000923	exon6	c.C580A	p.Q194K	GGAGCTGATTGCT	.	41	4	68	0	.	0	0	0	0	0	T	18331699	G	T	18331699	3	4	2	1	0	0	0	0	1	0	0	0	11670	1299	45	3	1602	3	PDE4C	19	18331699	Missense_Mutation	SNP	G	TCGA-OR-A5J2-01A-11D-A29I-10	17401946	18331699	40797284	74	128										
RINL	126432	hgsc.bcm.edu	37	chr19	39360720	39360720	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.043010752688172	4	1	1.06192893401015	3.53976311336717	0.861023460008232	0.569230769230769	1	0	ggctccgcaaggcgggggcgGggctctgcccttccggtccc	17	16	1	0	rs8110393		TCGA-OR-A5J2-01A-11D-A29I-10	TCGA-OR-A5J2-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d97c6076-7e4f-4dbe-85de-12bc0d84d8e8	367617cb-2dce-4769-bd48-49d49dd3d93a	.	RINL-91	NM_001195833	exon9	c.C1205T	p.P402L	GGGGCGGGGCTCT	.	13	12	1	0	G|0.349;A|0.651	0	0	0	0	0	A	39360720	G	A	39360720	3	1	2	1	0	0	0	0	1	0	0	0	13410	1232	43	3	511	3	RINL	19	39360720	Missense_Mutation	SNP	G	TCGA-OR-A5J2-01A-11D-A29I-10	21029021	39360720	19768263	75	129										
ZNF230	7773	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr19	44515611	44515611	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.043010752688172	4	1	1.06192893401015	3.53976311336717	0.861023460008232	0.569230769230769	1	0	tatcattatttttaaatgatAtgtaagttgtacatatatat	4	2	1	1	novel		TCGA-OR-A5J2-01A-11D-A29I-10	TCGA-OR-A5J2-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d97c6076-7e4f-4dbe-85de-12bc0d84d8e8	367617cb-2dce-4769-bd48-49d49dd3d93a	.	ZNF230-90	NM_006300	exon5	c.A1420T	p.M474L	AATGATATGTAAG	.	18	6	15	0	.	4	4	0	0	0	T	44515611	A	T	44515611	3	4	2	1	0	0	0	0	1	0	0	0	17821	449	16	5	1434	5	ZNF230	19	44515611	Missense_Mutation	SNP	A	TCGA-OR-A5J2-01A-11D-A29I-10	5154891	44515611	14613372	76	130										
TPRX1	284355	broad.mit.edu	37	chr19	48305622	48305622	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.043010752688172	4	1	1.06192893401015	3.53976311336717	0.861023460008232	0.569230769230769	1	0	cgggcctgggtttgggcctgAgattgggcctgagattgggc	19	8	0	2	rs201007421		TCGA-OR-A5J2-01A-11D-A29I-10	TCGA-OR-A5J2-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d97c6076-7e4f-4dbe-85de-12bc0d84d8e8	367617cb-2dce-4769-bd48-49d49dd3d93a	.	TPRX1-90	NM_198479	exon2	c.T646C	p.S216P	GGCCTGAGATTGG	.	25	4	26	2	.	1	1	0	0	0	G	48305622	A	G	48305622	3	3	2	1	0	0	0	0	1	0	0	0	16460	304	11	4	593	4	TPRX1	19	48305622	Missense_Mutation	SNP	A	TCGA-OR-A5J2-01A-11D-A29I-10	3790011	48305622	10823361	77	131										
NTN5	126147	hgsc.bcm.edu	37	chr19	49164952	49164952	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.043010752688172	4	1	1.06192893401015	3.53976311336717	0.861023460008232	0.569230769230769	1	0	gtctagtgctccggcctgggActgggtgtgggtgcccgcac	17	12	1	0	rs281392	byfrequency	TCGA-OR-A5J2-01A-11D-A29I-10	TCGA-OR-A5J2-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d97c6076-7e4f-4dbe-85de-12bc0d84d8e8	367617cb-2dce-4769-bd48-49d49dd3d93a	.	NTN5-136	NM_145807	exon7	c.T1452C	p.S484S	CCTGGGACTGGGT	.	4	4	2	0	A|0.464;G|0.536	0	0	0	0	0	G	49164952	A	G	49164952	2	3	2	1	0	0	0	0	0	0	0	1	10732	272	10	4		4	NTN5	19	49164952	Silent	SNP	A	TCGA-OR-A5J2-01A-11D-A29I-10	859330	49164952	9964031	78	132										
IZUMO1	284359	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	49245556	49245556	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.043010752688172	4	1	1.06192893401015	3.53976311336717	0.861023460008232	0.569230769230769	1	0	tcttccatttgaggaacttcCacattccgctctgggggtgg	11	11	2	1	novel		TCGA-OR-A5J2-01A-11D-A29I-10	TCGA-OR-A5J2-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d97c6076-7e4f-4dbe-85de-12bc0d84d8e8	367617cb-2dce-4769-bd48-49d49dd3d93a	.	IZUMO1-91	NM_182575	exon7	c.G510A	p.V170V	AACTTCCACATTC	.	94	75	99	0	.	5	0	5	0	0	T	49245556	C	T	49245556	2	4	2	1	0	0	0	0	0	0	0	1	7954	581	21	3		3	IZUMO1	19	49245556	Silent	SNP	C	TCGA-OR-A5J2-01A-11D-A29I-10	80604	49245556	9883427	79	133										
ZNF628	89887	hgsc.bcm.edu	37	chr19	55993260	55993260	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.043010752688172	4	1	1.06192893401015	3.53976311336717	0.861023460008232	0.569230769230769	1	0	gcgccgcccccgccccgggtAccgcctccgcggccccgccc	12	26	0	0	rs34864744		TCGA-OR-A5J2-01A-11D-A29I-10	TCGA-OR-A5J2-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d97c6076-7e4f-4dbe-85de-12bc0d84d8e8	367617cb-2dce-4769-bd48-49d49dd3d93a	.	ZNF628-22	NM_033113	exon3	c.A700G	p.T234A	CCGGGTACCGCCT	.	5	5	0	0	A|0.270;G|0.730	1	0	1	0	0	G	55993260	A	G	55993260	3	3	2	1	0	0	0	0	1	0	0	0	18089	391	14	4	690	4	ZNF628	19	55993260	Missense_Mutation	SNP	A	TCGA-OR-A5J2-01A-11D-A29I-10	6747704	55993260	3135723	80	134										
DNTTIP1	116092	hgsc.bcm.edu	37	chr20	44420682	44420682	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.043010752688172	4	1	1.06192893401015	3.53976311336717	0.861023460008232	0.569230769230769	1	0	gccgagcagccgcggggaccTagcggggccgagaggggcgg	22	12	0	1	rs2664591	byfrequency	TCGA-OR-A5J2-01A-11D-A29I-10	TCGA-OR-A5J2-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d97c6076-7e4f-4dbe-85de-12bc0d84d8e8	367617cb-2dce-4769-bd48-49d49dd3d93a	.	DNTTIP1-91	NM_052951	exon1	c.T39C	p.P13P	GGGACCTAGCGGG	.	10	6	0	0	T|0.311;C|0.689	5	5	0	0	0	C	44420682	T	C	44420682	2	2	2	1	0	0	0	0	0	0	0	1	4692	1509	53	4		4	DNTTIP1	20	44420682	Silent	SNP	T	TCGA-OR-A5J2-01A-11D-A29I-10		44420682	18604838	81	135										
RNF114	55905	bcgsc.ca	37	chr20	48562681	48562681	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.043010752688172	4	1	1.06192893401015	3.53976311336717	0.861023460008232	0.569230769230769	1	0	ttcaccttccaggaatgttcCaaaccgttacacctttcctt	4	14	1	0	novel		TCGA-OR-A5J2-01A-11D-A29I-10	TCGA-OR-A5J2-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d97c6076-7e4f-4dbe-85de-12bc0d84d8e8	367617cb-2dce-4769-bd48-49d49dd3d93a	.	RNF114-91	NM_018683	exon4	c.C407T	p.P136L	ATGTTCCAAACCG	.	127	56	84	2	.	0	0	0	0	0	T	48562681	C	T	48562681	3	4	2	1	0	0	0	0	1	0	0	0	13464	594	21	3	421	3	RNF114	20	48562681	Missense_Mutation	SNP	C	TCGA-OR-A5J2-01A-11D-A29I-10	4141999	48562681	14462839	82	136										
TMEM189	387521	hgsc.bcm.edu	37	chr20	48770159	48770159	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.043010752688172	4	1	1.06192893401015	3.53976311336717	0.861023460008232	0.569230769230769	1	0	cagctgctggcccggccagtTctcggcgcccgccatggcca	13	18	1	0	rs232733		TCGA-OR-A5J2-01A-11D-A29I-10	TCGA-OR-A5J2-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d97c6076-7e4f-4dbe-85de-12bc0d84d8e8	367617cb-2dce-4769-bd48-49d49dd3d93a	.	TMEM189-22	NM_199129	exon1	c.A16G	p.N6D	GCCAGTTCTCGGC	.	7	7	0	0	C|0.999;T|0.001	12	0	12	0	0	C	48770159	T	C	48770159	3	2	2	1	0	0	0	0	1	0	0	0	16148	1783	62	4	820	4	TMEM189	20	48770159	Missense_Mutation	SNP	T	TCGA-OR-A5J2-01A-11D-A29I-10	207478	48770159	14255361	83	137										
COL9A3	1299	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr20	61470085	61470085	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.043010752688172	4	1	1.06192893401015	3.53976311336717	0.861023460008232	0.569230769230769	1	0	gcggcaggagcagggctggaCgggcctgaaggagaccaggg	21	9	0	2	novel		TCGA-OR-A5J2-01A-11D-A29I-10	TCGA-OR-A5J2-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d97c6076-7e4f-4dbe-85de-12bc0d84d8e8	367617cb-2dce-4769-bd48-49d49dd3d93a	.	COL9A3-514	NM_001853	exon31	c.C1836T	p.D612D	GCTGGACGGGCCT	.	325	13	205	0	.	20	17	3	0	0	T	61470085	C	T	61470085	2	4	2	1	0	0	0	0	0	0	0	1	3715	535	19	1		1	COL9A3	20	61470085	Silent	SNP	C	TCGA-OR-A5J2-01A-11D-A29I-10	12699926	61470085	1555435	84	138										
RTEL1	51750	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr20	62303930	62303930	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.043010752688172	4	1	1.06192893401015	3.53976311336717	0.861023460008232	0.569230769230769	1	0	gccgcagagcacacaacattGacctgaaggggacagtcgtg	13	11	0	3	novel		TCGA-OR-A5J2-01A-11D-A29I-10	TCGA-OR-A5J2-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d97c6076-7e4f-4dbe-85de-12bc0d84d8e8	367617cb-2dce-4769-bd48-49d49dd3d93a	.	RTEL1-44	NM_032957	exon9	c.G793T	p.D265Y	AACATTGACCTGA	.	143	36	107	1	.	18	12	6	0	0	T	62303930	G	T	62303930	3	4	2	1	0	0	0	0	1	0	0	0	13755	1290	45	3	751	3	RTEL1	20	62303930	Missense_Mutation	SNP	G	TCGA-OR-A5J2-01A-11D-A29I-10	833845	62303930	721590	85	139										
SLC5A3	6526	broad.mit.edu	37	chr21	35468284	35468284	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.043010752688172	4	1	1.06192893401015	3.53976311336717	0.861023460008232	0.569230769230769	1	0	atgaagatgttccttggcctGgattcattcttgggcagacc	11	9	2	3	novel		TCGA-OR-A5J2-01A-11D-A29I-10	TCGA-OR-A5J2-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d97c6076-7e4f-4dbe-85de-12bc0d84d8e8	367617cb-2dce-4769-bd48-49d49dd3d93a	.	SLC5A3-92	NM_006933	exon2	c.G787T	p.G263X	TGGCCTGGATTCA	.	127	5	154	0	.	12	12	0	0	0	T	35468284	G	T	35468284	4	4	2	1	0	0	0	0	0	1	0	0	14701	1349	47	3	789	3	SLC5A3	21	35468284	Nonsense_Mutation	SNP	G	TCGA-OR-A5J2-01A-11D-A29I-10		35468284	12661611	86	140										
KRTAP10-4	386672	ucsc.edu	37	chr21	45993851	45993851	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.043010752688172	4	1	1.06192893401015	3.53976311336717	0.861023460008232	0.569230769230769	1	0	ccctgctgcccagtgacctgCgagcccagcccctgccaatc	9	20	0	1	rs543299		TCGA-OR-A5J2-01A-11D-A29I-10	TCGA-OR-A5J2-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d97c6076-7e4f-4dbe-85de-12bc0d84d8e8	367617cb-2dce-4769-bd48-49d49dd3d93a	.	KRTAP10-4-90	NM_198687	exon1	c.C216T	p.C72C	GACCTGCGAGCCC	.	26	16	14	2	C|1.000;|0.000	0	0	0	0	0	T	45993851	C	T	45993851	2	4	2	1	0	0	0	0	0	0	0	1	8532	776	27	1		1	KRTAP10-4	21	45993851	Silent	SNP	C	TCGA-OR-A5J2-01A-11D-A29I-10	10525567	45993851	2136044	87	141										
PCNT	5116	ucsc.edu	37	chr21	47848459	47848459	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.043010752688172	4	1	1.06192893401015	3.53976311336717	0.861023460008232	0.569230769230769	1	0	tgcgcacggcgctgacaagcGcagaggcgcgcgggagccag	18	13	0	2	rs2839256	byfrequency	TCGA-OR-A5J2-01A-11D-A29I-10	TCGA-OR-A5J2-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d97c6076-7e4f-4dbe-85de-12bc0d84d8e8	367617cb-2dce-4769-bd48-49d49dd3d93a	.	PCNT-141	NM_006031	exon35	c.G7645A	p.A2549T	ACAAGCGCAGAGG	.	44	5	21	0	A|0.200;C|0.007	5	5	0	0	0	A	47848459	G	A	47848459	3	1	2	1	0	0	0	0	1	0	0	0	11619	1087	38	1	7783	1	PCNT	21	47848459	Missense_Mutation	SNP	G	TCGA-OR-A5J2-01A-11D-A29I-10	1854608	47848459	281436	88	142										
ZDHHC8	29801	bcgsc.ca	37	chr22	20131116	20131116	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.043010752688172	4	1	1.06192893401015	3.53976311336717	0.861023460008232	0.569230769230769	1	0	ctgatcaggccagcagcaacGccccggggccccggcccagc	13	19	1	1	rs80226867	byfrequency	TCGA-OR-A5J2-01A-11D-A29I-10	TCGA-OR-A5J2-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d97c6076-7e4f-4dbe-85de-12bc0d84d8e8	367617cb-2dce-4769-bd48-49d49dd3d93a	.	ZDHHC8-91	NM_001185024	exon10	c.G1963A	p.A655T	AGCAACGCCCCGG	.	47	39	8	0	G|0.962;A|0.038	11	0	11	0	0	A	20131116	G	A	20131116	3	1	2	1	0	0	0	0	1	0	0	0	17658	1087	38	1	2001	1	ZDHHC8	22	20131116	Missense_Mutation	SNP	G	TCGA-OR-A5J2-01A-11D-A29I-10		20131116	31173450	89	143										
UPK3A	7380	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr22	45691450	45691450	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.043010752688172	4	1	1.06192893401015	3.53976311336717	0.861023460008232	0.569230769230769	1	0	cccttggacagggacatgggGagttctgatggggaaacgac	16	8	1	1	novel		TCGA-OR-A5J2-01A-11D-A29I-10	TCGA-OR-A5J2-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d97c6076-7e4f-4dbe-85de-12bc0d84d8e8	367617cb-2dce-4769-bd48-49d49dd3d93a	.	UPK3A-90	NM_006953	exon6	c.G714A	p.G238G	CATGGGGAGTTCT	.	55	45	73	0	.	0	0	0	0	0	A	45691450	G	A	45691450	2	1	2	1	0	0	0	0	0	0	0	1	17048	1161	41	3		3	UPK3A	22	45691450	Silent	SNP	G	TCGA-OR-A5J2-01A-11D-A29I-10	25560334	45691450	5613116	90	144										
FAM9A	171482	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	8763159	8763159	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.043010752688172	4	1	1.06192893401015	3.53976311336717	0.861023460008232	0.569230769230769	1	0	cttcttcttcttcctcttccTcttcttctgtttcttctcct	1	16	9	0	novel		TCGA-OR-A5J2-01A-11D-A29I-10	TCGA-OR-A5J2-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d97c6076-7e4f-4dbe-85de-12bc0d84d8e8	367617cb-2dce-4769-bd48-49d49dd3d93a	.	FAM9A-130	NM_174951	exon7	c.A791T	p.E264V	TCTTCCTCTTCTT	.	48	7	84	0	.	0	0	0	0	0	A	8763159	T	A	8763159	3	1	2	1	0	0	0	0	1	0	0	0	5678	1551	54	5	219	5	FAM9A	23	8763159	Missense_Mutation	SNP	T	TCGA-OR-A5J2-01A-11D-A29I-10		8763159	146507401	91	145										
SRPX	8406	broad.mit.edu	37	chrX	38079976	38079978	+	In_Frame_Del	DEL	GCA	GCA	-													0.043010752688172	4	1	1.06192893401015	3.53976311336717	0.861023460008232	0.569230769230769	1	0	gctgcggctgggcgggacgcGcagcagcagcagcagcagca					rs35523939	alternate_allele	TCGA-OR-A5J2-01A-11D-A29I-10	TCGA-OR-A5J2-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d97c6076-7e4f-4dbe-85de-12bc0d84d8e8	367617cb-2dce-4769-bd48-49d49dd3d93a	.	SRPX-130	NM_001170751	exon1	c.68_70del	p.23_24del	GGACGCGCAGCAG	.	25	7	9	0	-|1.000;|0.000	0	0	0	0	0	-	38079978	GCA	-	38079976	7	5	2	1	0	1	0	1	0	0	0	0	15201	1087	38	0	1364	0	SRPX	23	38079976	In_Frame_Del	DEL	GCA	TCGA-OR-A5J2-01A-11D-A29I-10	29316817	38079976	117190584	92	146										
BCOR	54880	broad.mit.edu;bcgsc.ca	37	chrX	39913284	39913284	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.043010752688172	4	1	1.06192893401015	3.53976311336717	0.861023460008232	0.569230769230769	1	0	taaaacatcatagccactttCatcatctggttctaatggag	6	9	5	0	novel		TCGA-OR-A5J2-01A-11D-A29I-10	TCGA-OR-A5J2-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d97c6076-7e4f-4dbe-85de-12bc0d84d8e8	367617cb-2dce-4769-bd48-49d49dd3d93a	.	BCOR-229	NM_001123385	exon14	c.G4831T	p.E1611X	CACTTTCATCATC	.	125	11	158	1	.	0	0	0	0	0	A	39913284	C	A	39913284	4	1	2	1	0	0	0	0	0	1	0	0	1387	835	29	3	444	3	BCOR	23	39913284	Nonsense_Mutation	SNP	C	TCGA-OR-A5J2-01A-11D-A29I-10	1833308	39913284	115357276	93	147										
NUDT10	170685	broad.mit.edu	37	chrX	51076024	51076024	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.043010752688172	4	1	1.06192893401015	3.53976311336717	0.861023460008232	0.569230769230769	1	0	gtccgagaggtgtacgaagaGgcgggagtcaaggggaagtt	19	5	1	2	rs2801626		TCGA-OR-A5J2-01A-11D-A29I-10	TCGA-OR-A5J2-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d97c6076-7e4f-4dbe-85de-12bc0d84d8e8	367617cb-2dce-4769-bd48-49d49dd3d93a	.	NUDT10-90	NM_153183	exon2	c.G207A	p.E69E	CGAAGAGGCGGGA	.	194	4	180	1	.	1	0	1	0	0	A	51076024	G	A	51076024	2	1	2	1	0	0	0	0	0	0	0	1	10755	991	35	3		3	NUDT10	23	51076024	Silent	SNP	G	TCGA-OR-A5J2-01A-11D-A29I-10	11162740	51076024	104194536	94	148										
TGIF2LX	90316	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	89177681	89177681	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.043010752688172	4	1	1.06192893401015	3.53976311336717	0.861023460008232	0.569230769230769	1	0	gtcaaggtttctgtcacatcCccgtcttctccagaacttgt	7	13	5	1	novel		TCGA-OR-A5J2-01A-11D-A29I-10	TCGA-OR-A5J2-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d97c6076-7e4f-4dbe-85de-12bc0d84d8e8	367617cb-2dce-4769-bd48-49d49dd3d93a	.	TGIF2LX-92	NM_138960	exon2	c.C597A	p.S199S	CACATCCCCGTCT	.	348	132	354	0	.	0	0	0	0	0	A	89177681	C	A	89177681	2	1	2	1	0	0	0	0	0	0	0	1	15864	610	22	3		3	TGIF2LX	23	89177681	Silent	SNP	C	TCGA-OR-A5J2-01A-11D-A29I-10	38101657	89177681	66092879	95	149										
FLNA	2316	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	153577797	153577797	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.043010752688172	4	1	1.06192893401015	3.53976311336717	0.861023460008232	0.569230769230769	1	0	gccttgctcagccccaggccCttggccaccaccttgctggc	10	19	1	0	novel		TCGA-OR-A5J2-01A-11D-A29I-10	TCGA-OR-A5J2-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d97c6076-7e4f-4dbe-85de-12bc0d84d8e8	367617cb-2dce-4769-bd48-49d49dd3d93a	.	FLNA-599	NM_001110556	exon47	c.G7689T	p.K2563N	CAGGCCCTTGGCC	.	102	39	129	1	.	102	102	0	0	0	A	153577797	C	A	153577797	3	1	2	1	0	0	0	0	1	0	0	0	5952	680	24	3	262	3	FLNA	23	153577797	Missense_Mutation	SNP	C	TCGA-OR-A5J2-01A-11D-A29I-10	64400116	153577797	1692763	96	150										
TTLL10	254173	bcgsc.ca	37	chr1	1120431	1120431	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0465116279069767	4	0.943798451584757	1.23690922730683	3.3241935483871	0.428928199791883	0.559440559440559	1	0	acacctcaaccgctacatcaGtgacacgttctggaaggccc	8	15	3	1	rs1320571	byfrequency	TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	.	TTLL10-153	NM_001130045	exon13	c.G1343A	p.S448N	ACATCAGTGACAC	.	268	11	291	0	G|0.839;A|0.161	0	0	0	0	0	A	1120431	G	A	1120431	3	1	3	1	0	0	0	0	1	0	0	0	16761	1029	36	3	1381	3	TTLL10	1	1120431	Missense_Mutation	SNP	G	TCGA-OR-A5J3-01A-11D-A29I-10		1120431	248130190	1	151										
DVL1	1855	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr1	1273448	1273448	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0465116279069767	4	0.943798451584757	1.23690922730683	3.3241935483871	0.428928199791883	0.559440559440559	1	0	cagggtgggggtcccgggtaCtggtaggggtagccctgacc	19	10	0	1	novel		TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	.	DVL1-658	NM_004421	exon14	c.G1548A	p.Q516Q	CGGGTACTGGTAG	.	31	28	21	0	.	52	0	52	0	0	T	1273448	C	T	1273448	2	4	3	1	0	0	0	0	0	0	0	1	4846	564	20	3		3	DVL1	1	1273448	Silent	SNP	C	TCGA-OR-A5J3-01A-11D-A29I-10	153017	1273448	247977173	2	152										
ATAD3A	55210	hgsc.bcm.edu	37	chr1	1447693	1447693	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0465116279069767	4	0.943798451584757	1.23690922730683	3.3241935483871	0.428928199791883	0.559440559440559	1	0	aagggccccaagggtgaaggCgcggggccgccgccgccttt	17	14	0	1	novel		TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	.	ATAD3A-91	NM_001170535	exon1	c.C45T	p.G15G	TGAAGGCGCGGGG	.	16	15	4	0	.	1	0	1	0	0	T	1447693	C	T	1447693	2	4	3	1	0	0	0	0	0	0	0	1	1074	755	27	1		1	ATAD3A	1	1447693	Silent	SNP	C	TCGA-OR-A5J3-01A-11D-A29I-10	174245	1447693	247802928	3	153										
CDK11A	728642	ucsc.edu;bcgsc.ca	37	chr1	1638897	1638897	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0465116279069767	4	0.943798451584757	1.23690922730683	3.3241935483871	0.428928199791883	0.559440559440559	1	0	cctgcttgagctcgatgggcAacagggcaggggagtcgggc	18	10	0	1	rs201956539		TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	.	CDK11A-14	NM_024011	exon11	c.T1196C	p.L399S	ATGGGCAACAGGG	.	71	58	67	5	A|0.998;G|0.002	40	0	40	0	0	G	1638897	A	G	1638897	3	3	3	1	0	0	0	0	1	0	0	0	3132	131	5	4	1186	4	CDK11A	1	1638897	Missense_Mutation	SNP	A	TCGA-OR-A5J3-01A-11D-A29I-10	191204	1638897	247611724	4	154										
AGMAT	79814	hgsc.bcm.edu	37	chr1	15911349	15911349	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0465116279069767	4	0.943798451584757	1.23690922730683	3.3241935483871	0.428928199791883	0.559440559440559	1	0	gggggctggttccggggcgcGtcggaagcctggcggctctg	21	11	1	0	rs3737705	byfrequency	TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	.	AGMAT-91	NM_024758	exon1	c.C114T	p.D38D	GGGCGCGTCGGAA	.	7	7	1	0	G|0.647;A|0.353	0	0	0	0	0	A	15911349	G	A	15911349	2	1	3	1	0	0	0	0	0	0	0	1	385	1136	40	1		1	AGMAT	1	15911349	Silent	SNP	G	TCGA-OR-A5J3-01A-11D-A29I-10	14272452	15911349	233339272	5	155										
IL22RA1	58985	bcgsc.ca	37	chr1	24465113	24465113	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0465116279069767	4	0.943798451584757	1.23690922730683	3.3241935483871	0.428928199791883	0.559440559440559	1	0	accgtgtctggggtgccctcCggcccgctgtcccacgtcag	13	17	2	0	rs10903022	byfrequency	TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	.	IL22RA1-91	NM_021258	exon2	c.G135A	p.P45P	GCCCTCCGGCCCG	.	97	5	116	1	C|0.607;N|0.000	0	0	0	0	0	T	24465113	C	T	24465113	2	4	3	1	0	0	0	0	0	0	0	1	7694	639	23	1		1	IL22RA1	1	24465113	Silent	SNP	C	TCGA-OR-A5J3-01A-11D-A29I-10	8553764	24465113	224785508	6	156										
KCNA3	3738	broad.mit.edu	37	chr1	111216299	111216299	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0465116279069767	4	0.943798451584757	1.23690922730683	3.3241935483871	0.428928199791883	0.559440559440559	1	0	gcagccccttggagtggcgcGacagcttgaagatgcggaag	16	10	0	2	novel		TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	.	KCNA3-95	NM_002232	exon1	c.C1133A	p.S378X	TGGCGCGACAGCT	.	113	3	177	2	.	0	0	0	0	0	T	111216299	G	T	111216299	4	4	3	1	0	0	0	0	0	1	0	0	8025	1059	37	2	598	2	KCNA3	1	111216299	Nonsense_Mutation	SNP	G	TCGA-OR-A5J3-01A-11D-A29I-10	86751186	111216299	138034322	7	157										
PDE4DIP	9659	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr1	145075687	145075687	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0465116279069767	4	0.943798451584757	1.23690922730683	3.3241935483871	0.428928199791883	0.559440559440559	1	0	cctcggccgctgctgcccagCtcccggctggctccgggcgc	14	20	0	0	rs78401481	byfrequency	TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	.	PDE4DIP-663	NM_022359	exon1	c.G176C	p.S59T	GCCCAGCTCCCGG	.	115	20	16	0	C|0.989;G|0.011	0	0	0	0	0	G	145075687	C	G	145075687	3	3	3	1	0	0	0	0	1	0	0	0	11672	797	28	3	8636	3	PDE4DIP	1	145075687	Missense_Mutation	SNP	C	TCGA-OR-A5J3-01A-11D-A29I-10	33859388	145075687	104174934	8	158										
NES	10763	bcgsc.ca	37	chr1	156640503	156640503	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0465116279069767	4	0.943798451584757	1.23690922730683	3.3241935483871	0.428928199791883	0.559440559440559	1	0	tcccaagggtctctgctcttCccaggcagctcggagaactc	10	15	2	1	rs3828043	byfrequency	TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	.	NES-520	NM_006617	exon4	c.G3477A	p.G1159G	GCTCTTCCCAGGC	.	68	4	91	0	C|0.787;T|0.213	3	3	0	0	0	T	156640503	C	T	156640503	2	4	3	1	0	0	0	0	0	0	0	1	10366	842	30	3		3	NES	1	156640503	Silent	SNP	C	TCGA-OR-A5J3-01A-11D-A29I-10	11564816	156640503	92610118	9	159										
RNASEL	6041	bcgsc.ca	37	chr1	182554557	182554557	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0465116279069767	4	0.943798451584757	1.23690922730683	3.3241935483871	0.428928199791883	0.559440559440559	1	0	atatagatgacaggacatttCgggcaaattcatcttcctca	7	9	3	2	rs486907	byfrequency	TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	.	RNASEL-336	NM_021133	exon2	c.G1385A	p.R462Q	ACATTTCGGGCAA	.	212	8	241	3	C|0.737;T|0.263	2	2	0	0	0	T	182554557	C	T	182554557	3	4	3	1	0	0	0	0	1	0	0	0	13451	884	31	1	864	1	RNASEL	1	182554557	Missense_Mutation	SNP	C	TCGA-OR-A5J3-01A-11D-A29I-10	25914054	182554557	66696064	10	160										
CAPN2	824	bcgsc.ca	37	chr1	223933079	223933079	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0465116279069767	4	0.943798451584757	1.23690922730683	3.3241935483871	0.428928199791883	0.559440559440559	1	0	accaaggacggggagctgctCtttgtgcattcagccgaagg	14	10	2	0	rs17598	bycluster;byfrequency;by1000genomes	TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	.	CAPN2-523	NM_001748	exon4	c.C498T	p.L166L	GCTGCTCTTTGTG	.	114	5	168	2	C|0.742;T|0.258	40	40	0	0	0	T	223933079	C	T	223933079	2	4	3	1	0	0	0	0	0	0	0	1	2633	900	32	3		3	CAPN2	1	223933079	Silent	SNP	C	TCGA-OR-A5J3-01A-11D-A29I-10	41378522	223933079	25317542	11	161										
PSEN2	5664	bcgsc.ca	37	chr1	227077809	227077809	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0465116279069767	4	0.943798451584757	1.23690922730683	3.3241935483871	0.428928199791883	0.559440559440559	1	0	gcccaggagagaaatgagccCatattccctgccctgatata	9	12	0	3	rs75733498	byfrequency	TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	.	PSEN2-658	NM_012486	exon9	c.C861T	p.P287P	TGAGCCCATATTC	.	90	5	115	0	C|0.993;T|0.007	22	22	0	0	0	T	227077809	C	T	227077809	2	4	3	1	0	0	0	0	0	0	0	1	12683	581	21	3		3	PSEN2	1	227077809	Silent	SNP	C	TCGA-OR-A5J3-01A-11D-A29I-10	3144730	227077809	22172812	12	162										
OBSCN	84033	hgsc.bcm.edu	37	chr1	228504670	228504670	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0465116279069767	4	0.943798451584757	1.23690922730683	3.3241935483871	0.428928199791883	0.559440559440559	1	0	gcgacgccgtggcctctgcgCggctcaccgtgctgggtggg	18	14	2	0	rs11810627	byfrequency	TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	.	OBSCN-403	NM_001271223	exon62	c.C16417T	p.R5473W	TCTGCGCGGCTCA	.	6	5	0	0	C|0.643;T|0.357	0	0	0	0	0	T	228504670	C	T	228504670	3	4	3	1	0	0	0	0	1	0	0	0	10841	759	27	1	13744	1	OBSCN	1	228504670	Missense_Mutation	SNP	C	TCGA-OR-A5J3-01A-11D-A29I-10	1426861	228504670	20745951	13	163										
TP53I3	9540	broad.mit.edu	37	chr2	24307079	24307079	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0465116279069767	4	0.943798451584757	1.23690922730683	3.3241935483871	0.428928199791883	0.559440559440559	1	0	ctgcattaagtccgcccggtTcagggcgctggccgccacct	12	16	1	0	novel		TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	.	TP53I3-226	NM_147184	exon2	c.A118C	p.N40H	CCCGGTTCAGGGC	.	50	5	41	0	.	5	5	0	0	0	G	24307079	T	G	24307079	3	3	3	1	0	0	0	0	1	0	0	0	16425	1783	62	5	900	5	TP53I3	2	24307079	Missense_Mutation	SNP	T	TCGA-OR-A5J3-01A-11D-A29I-10		24307079	218892294	14	164										
GPR113	165082	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	26537397	26537397	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0465116279069767	4	0.943798451584757	1.23690922730683	3.3241935483871	0.428928199791883	0.559440559440559	1	0	gagatggacagctggtatggAagtcgagccacatctgtcgc	14	9	1	1	novel		TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	.	GPR113-94	NM_001145168	exon7	c.T1017C	p.L339L	GTATGGAAGTCGA	.	317	276	380	2	.	0	0	0	0	0	G	26537397	A	G	26537397	2	3	3	1	0	0	0	0	0	0	0	1	6650	233	9	4		4	GPR113	2	26537397	Silent	SNP	A	TCGA-OR-A5J3-01A-11D-A29I-10	2230318	26537397	216661976	15	165										
IMMT	10989	ucsc.edu;bcgsc.ca	37	chr2	86400824	86400824	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0465116279069767	4	0.943798451584757	1.23690922730683	3.3241935483871	0.428928199791883	0.559440559440559	1	0	tttttggagttgtgaggcagGctgtttagattctttcatta	11	4	2	2	rs1050301	byfrequency	TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	.	IMMT-91	NM_006839	exon4	c.C370T	p.P124S	AGGCAGGCTGTTT	.	37	4	34	0	T|0.226;G|0.216;C|0.446;N|0.001;A|0.111	51	51	0	0	0	A	86400824	G	A	86400824	3	1	3	1	0	0	0	0	1	0	0	0	7739	1203	42	3	1954	3	IMMT	2	86400824	Missense_Mutation	SNP	G	TCGA-OR-A5J3-01A-11D-A29I-10	59863427	86400824	156798549	16	166										
LIMS1	3987	ucsc.edu	37	chr2	109293130	109293130	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0465116279069767	4	0.943798451584757	1.23690922730683	3.3241935483871	0.428928199791883	0.559440559440559	1	0	tatgagaggaaaggcctggcAtattgtgaaactcactataa	10	6	1	2	rs2438733	bycluster;byfrequency	TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	.	LIMS1-522	NM_001193485	exon7	c.A900G	p.A300A	CCTGGCATATTGT	.	50	10	263	4	A|0.500;G|0.500	4	0	4	0	0	G	109293130	A	G	109293130	2	3	3	1	0	0	0	0	0	0	0	1	8826	204	8	4		4	LIMS1	2	109293130	Silent	SNP	A	TCGA-OR-A5J3-01A-11D-A29I-10	22892306	109293130	133906243	17	167										
C2orf54	79919	hgsc.bcm.edu	37	chr2	241827798	241827798	+	Missense_Mutation	SNP	T	T	C													0.0465116279069767	4	0.943798451584757	1.23690922730683	3.3241935483871	0.428928199791883	0.559440559440559	1	0	cgccttgagcccggagccgaTgcgcggcggggggctgcggc					rs11899555	byfrequency	TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	.	C2orf54-90	NM_001085437	exon4	c.A1162G	p.I388V	AGCCGATGCGCGG	.	12	11	2	0	T|0.796;C|0.204	0	0	0	0	0	C	241827798	T	C	241827798	3	2	3	1	0	0	0	0	1	0	0	0	2181	1464	51	4	189	4	C2orf54	2	241827798	Missense_Mutation	SNP	T	TCGA-OR-A5J3-01A-11D-A29I-10	132534668	241827798	1371575	18	168	4	2								
C2orf54	79919	hgsc.bcm.edu	37	chr2	241827805	241827805	+	Silent	SNP	C	C	A													0.0465116279069767	4	0.943798451584757	1.23690922730683	3.3241935483871	0.428928199791883	0.559440559440559	1	0	agcccggagccgatgcgcggCggggggctgcggcccaggtg					rs75895045		TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	.	C2orf54-90	NM_001085437	exon4	c.G1155T	p.P385P	GCGCGGCGGGGGG	.	10	9	2	0	C|0.942;A|0.058	0	0	0	0	0	A	241827805	C	A	241827805	2	1	3	1	0	0	0	0	0	0	0	1	2181	755	27	2		2	C2orf54	2	241827805	Silent	SNP	C	TCGA-OR-A5J3-01A-11D-A29I-10	7	241827805	1371568	19	169	4	2								
PLCD1	5333	broad.mit.edu	37	chr3	38050645	38050645	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0465116279069767	4	0.943798451584757	1.23690922730683	3.3241935483871	0.428928199791883	0.559440559440559	1	0	acgttgtggcggacaaagccGtttcctgaggggaggtgtgg	18	7	0	1	novel		TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	.	PLCD1-226	NM_001130964	exon11	c.C1674T	p.N558N	AAAGCCGTTTCCT	.	97	3	83	0	.	0	0	0	0	0	A	38050645	G	A	38050645	2	1	3	1	0	0	0	0	0	0	0	1	12060	1136	40	1		1	PLCD1	3	38050645	Silent	SNP	G	TCGA-OR-A5J3-01A-11D-A29I-10		38050645	159971785	20	170										
SETD2	29072	broad.mit.edu	37	chr3	47163592	47163592	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0465116279069767	4	0.943798451584757	1.23690922730683	3.3241935483871	0.428928199791883	0.559440559440559	1	0	attcttcacatgcaaattttGagtgatctgtcaaatttcta	5	7	5	2	rs201639149		TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	.	SETD2-1273	NM_014159	exon3	c.C2534G	p.S845X	AATTTTGAGTGAT	.	65	3	56	0	G|0.999;C|0.000	2	2	0	0	0	C	47163592	G	C	47163592	4	2	3	1	0	0	0	0	0	1	0	0	14166	1294	45	3	5236	3	SETD2	3	47163592	Nonsense_Mutation	SNP	G	TCGA-OR-A5J3-01A-11D-A29I-10	9112947	47163592	150858838	21	171										
TLR9	54106	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr3	52255624	52255624	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0465116279069767	4	0.943798451584757	1.23690922730683	3.3241935483871	0.428928199791883	0.559440559440559	1	0	cctccaggcacaggcggagtGcccagcgcccacggcactcc	12	19	0	0	novel		TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	.	TLR9-587	NM_017442	exon2	c.C2708A	p.A903E	CGGAGTGCCCAGC	.	141	11	72	0	.	1	1	0	0	0	T	52255624	G	T	52255624	3	4	3	1	0	0	0	0	1	0	0	0	15995	1319	46	3	394	3	TLR9	3	52255624	Missense_Mutation	SNP	G	TCGA-OR-A5J3-01A-11D-A29I-10	5092032	52255624	145766806	22	172										
GPR171	29909	broad.mit.edu	37	chr3	150916947	150916947	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0465116279069767	4	0.943798451584757	1.23690922730683	3.3241935483871	0.428928199791883	0.559440559440559	1	0	tcagcttccaaggtgccacaCccaagtcaacaacaattttc	5	14	2	0	novel		TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	.	GPR171-90	NM_013308	exon3	c.G227A	p.G76D	GCCACACCCAAGT	.	192	4	179	0	.	0	0	0	0	0	T	150916947	C	T	150916947	3	4	3	1	0	0	0	0	1	0	0	0	6688	507	18	3	736	3	GPR171	3	150916947	Missense_Mutation	SNP	C	TCGA-OR-A5J3-01A-11D-A29I-10	98661323	150916947	47105483	23	173										
ETV5	2119	broad.mit.edu	37	chr3	185797720	185797720	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0465116279069767	4	0.943798451584757	1.23690922730683	3.3241935483871	0.428928199791883	0.559440559440559	1	0	gtccaggctctggaagcgaaTggggggcgggggcggggccc	22	10	1	0	novel		TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	.	ETV5-706	NM_004454	exon7	c.A536C	p.H179P	AGCGAATGGGGGG	.	44	9	46	1	.	7	7	0	0	0	G	185797720	T	G	185797720	3	3	3	1	0	0	0	0	1	0	0	0	5295	1464	51	5	1024	5	ETV5	3	185797720	Missense_Mutation	SNP	T	TCGA-OR-A5J3-01A-11D-A29I-10	34880773	185797720	12224710	24	174										
LEPREL1	55214	bcgsc.ca	37	chr3	189713205	189713205	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0465116279069767	4	0.943798451584757	1.23690922730683	3.3241935483871	0.428928199791883	0.559440559440559	1	0	acgaaaaatgtgtgagctgcTtccactgctttttcgagctg	10	9	0	1	rs9821880	byfrequency	TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	.	LEPREL1-155	NM_018192	exon2	c.A507G	p.E169E	AGCTGCTTCCACT	.	57	4	78	0	C|0.302;N|0.001	21	21	0	0	0	C	189713205	T	C	189713205	2	2	3	1	0	0	0	0	0	0	0	1	8752	1606	56	4		4	LEPREL1	3	189713205	Silent	SNP	T	TCGA-OR-A5J3-01A-11D-A29I-10	3915485	189713205	8309225	25	175										
DSPP	1834	ucsc.edu	37	chr4	88537078	88537078	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0465116279069767	4	0.943798451584757	1.23690922730683	3.3241935483871	0.428928199791883	0.559440559440559	1	0	agtgaaagcagtgatagcagTgacagcagcaatagcagtga	13	6	0	4	novel		TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	.	DSPP-90	NM_014208	exon5	c.T3264C	p.S1088S	TAGCAGTGACAGC	.	286	12	392	6	.	0	0	0	0	0	C	88537078	T	C	88537078	2	2	3	1	0	0	0	0	0	0	0	1	4793	1693	59	4		4	DSPP	4	88537078	Silent	SNP	T	TCGA-OR-A5J3-01A-11D-A29I-10		88537078	102617198	26	176										
DNAH5	1767	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	13870993	13870993	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0465116279069767	4	0.943798451584757	1.23690922730683	3.3241935483871	0.428928199791883	0.559440559440559	1	0	ggacgatttagtttcttattGaattcttcaataagcataaa	6	5	3	1	novel		TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	.	DNAH5-182	NM_001369	exon24	c.C3717A	p.F1239L	CTTATTGAATTCT	.	177	77	117	0	.	0	0	0	0	0	T	13870993	G	T	13870993	3	4	3	1	0	0	0	0	1	0	0	0	4615	1281	45	3	10381	3	DNAH5	5	13870993	Missense_Mutation	SNP	G	TCGA-OR-A5J3-01A-11D-A29I-10		13870993	167044267	27	177										
SNX18	112574	hgsc.bcm.edu	37	chr5	53814052	53814052	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0465116279069767	4	0.943798451584757	1.23690922730683	3.3241935483871	0.428928199791883	0.559440559440559	1	0	gggggcttcgagcccctgccTgtcgcgccccccgcctcctt	12	20	0	0	rs2548615		TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	.	SNX18-226	NM_052870	exon1	c.T270C	p.P90P	CCTGCCTGTCGCG	.	4	4	0	0	G|0.979;C|0.003	0	0	0	0	0	C	53814052	T	C	53814052	2	2	3	1	0	0	0	0	0	0	0	1	14924	1567	55	4		4	SNX18	5	53814052	Silent	SNP	T	TCGA-OR-A5J3-01A-11D-A29I-10	39943059	53814052	127101208	28	178										
PPWD1	23398	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	64878975	64878975	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0465116279069767	4	0.943798451584757	1.23690922730683	3.3241935483871	0.428928199791883	0.559440559440559	1	0	gctactcaagctgaaggaccTaaacgagtttcggacagtgc	11	10	1	1	novel		TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	.	PPWD1-91	NM_015342	exon8	c.T1461A	p.P487P	AGGACCTAAACGA	.	178	92	140	0	.	16	9	7	0	0	A	64878975	T	A	64878975	2	1	3	1	0	0	0	0	0	0	0	1	12446	1509	53	5		5	PPWD1	5	64878975	Silent	SNP	T	TCGA-OR-A5J3-01A-11D-A29I-10	11064923	64878975	116036285	29	179										
PCDHA12	56137	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	140255099	140255099	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0465116279069767	4	0.943798451584757	1.23690922730683	3.3241935483871	0.428928199791883	0.559440559440559	1	0	ggcccgggatcccagcgtctGctgctctcgcttctgctcct	11	17	3	0	novel		TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	.	.	NM_018903	exon1	c.G42C	p.L14L	GCGTCTGCTGCTC	.	101	37	61	0	.	0	0	0	0	0	C	140255099	G	C	140255099	2	2	3	1	0	0	0	0	0	0	0	1	11551	1306	46	3		3	PCDHA12	5	140255099	Silent	SNP	G	TCGA-OR-A5J3-01A-11D-A29I-10	75376124	140255099	40660161	30	180										
PCDHB13	56123	hgsc.bcm.edu	37	chr5	140595625	140595625	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0465116279069767	4	0.943798451584757	1.23690922730683	3.3241935483871	0.428928199791883	0.559440559440559	1	0	agcacaggctggtggtgctgGtcaaggacaatggcgagcct	16	9	1	0	rs76927815		TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	.	PCDHB13-93	NM_018933	exon1	c.G1930A	p.V644I	GTGCTGGTCAAGG	.	106	38	2	0	G|0.500;A|0.500	33	32	1	0	0	A	140595625	G	A	140595625	3	1	3	1	0	0	0	0	1	0	0	0	11567	1261	44	3	1932	3	PCDHB13	5	140595625	Missense_Mutation	SNP	G	TCGA-OR-A5J3-01A-11D-A29I-10	340526	140595625	40319635	31	181										
HK3	3101	broad.mit.edu	37	chr5	176315851	176315851	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0465116279069767	4	0.943798451584757	1.23690922730683	3.3241935483871	0.428928199791883	0.559440559440559	1	0	cacccaggtacaggcctccgAtcatcttctcaaacctgcag	7	16	3	0	novel		TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	.	HK3-294	NM_002115	exon9	c.T929C	p.I310T	CCTCCGATCATCT	.	98	4	60	0	.	0	0	0	0	0	G	176315851	A	G	176315851	3	3	3	1	0	0	0	0	1	0	0	0	7213	333	12	4	1886	4	HK3	5	176315851	Missense_Mutation	SNP	A	TCGA-OR-A5J3-01A-11D-A29I-10	35720226	176315851	4599409	32	182										
VARS	7407	hgsc.bcm.edu	37	chr6	31762843	31762844	+	Missense_Mutation	DNP	GG	GG	CT													0.0465116279069767	4	0.943798451584757	1.23690922730683	3.3241935483871	0.428928199791883	0.559440559440559	1	0	gcaggcggggtgggggaaagGgagtcctgctagtcgggggt					novel		TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	GG	GG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	.	VARS-93	NM_006295	exon2	c.C151A	p.P51S	GAAAGGGAGTCCT	.	4	0	0	0	G|0.721;T|0.279	0	0	0	0	0	CT	31762844	GG	CT	31762843	3	2	3	1	0	0	0	0	1	0	0	0	17161	1232	43	3	3758	3	VARS	6	31762843	Missense_Mutation	DNP	GG	TCGA-OR-A5J3-01A-11D-A29I-10		31762843	139352224	33	183										
KCNK17	89822	hgsc.bcm.edu	37	chr6	39282036	39282036	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0465116279069767	4	0.943798451584757	1.23690922730683	3.3241935483871	0.428928199791883	0.559440559440559	1	0	gagcagcaggagcacggtgcTgggcaccgcgcagccccgga	17	14	0	0	rs10947804	byfrequency	TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	.	KCNK17-227	NM_001135111	exon1	c.A61G	p.S21G	CGGTGCTGGGCAC	.	9	9	0	0	T|0.441;C|0.559	0	0	0	0	0	C	39282036	T	C	39282036	3	2	3	1	0	0	0	0	1	0	0	0	8085	1580	55	4	1089	4	KCNK17	6	39282036	Missense_Mutation	SNP	T	TCGA-OR-A5J3-01A-11D-A29I-10	7519193	39282036	131833031	34	184										
PKHD1	5314	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	51920393	51920393	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0465116279069767	4	0.943798451584757	1.23690922730683	3.3241935483871	0.428928199791883	0.559440559440559	1	0	actgctactcacgtgtgtatActgatctagccgatagccct	8	12	2	1	novel		TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	.	PKHD1-603	NM_170724	exon19	c.T1828A	p.Y610N	GTGTATACTGATC	.	108	93	121	1	.	0	0	0	0	0	T	51920393	A	T	51920393	3	4	3	1	0	0	0	0	1	0	0	0	12000	391	14	5	10631	5	PKHD1	6	51920393	Missense_Mutation	SNP	A	TCGA-OR-A5J3-01A-11D-A29I-10	12638357	51920393	119194674	35	185										
POU3F2	5454	hgsc.bcm.edu	37	chr6	99283376	99283376	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0465116279069767	4	0.943798451584757	1.23690922730683	3.3241935483871	0.428928199791883	0.559440559440559	1	0	gccggcgggcagccggccggTctgcaccaccacggcctgcg	16	18	1	0	rs195860		TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	.	POU3F2-90	NM_005604	exon1	c.T627G	p.G209G	GGCCGGTCTGCAC	.	9	9	0	0	T|0.089;G|0.911	0	0	0	0	0	G	99283376	T	G	99283376	2	3	3	1	0	0	0	0	0	0	0	1	12304	1654	58	5		5	POU3F2	6	99283376	Silent	SNP	T	TCGA-OR-A5J3-01A-11D-A29I-10	47362983	99283376	71831691	36	186										
USP42	84132	hgsc.bcm.edu	37	chr7	6193521	6193521	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0465116279069767	4	0.943798451584757	1.23690922730683	3.3241935483871	0.428928199791883	0.559440559440559	1	0	caagaaggctccgccgccccGcgatcccggcacccccgcta	10	21	0	1	rs61729726	byfrequency	TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	.	USP42-659	NM_032172	exon15	c.G2336C	p.R779P	CGCCCCGCGATCC	.	14	14	0	0	G|0.456;C|0.544	1	0	1	0	0	C	6193521	G	C	6193521	3	2	3	1	0	0	0	0	1	0	0	0	17111	1087	38	2		2	USP42	7	6193521	Missense_Mutation	SNP	G	TCGA-OR-A5J3-01A-11D-A29I-10		6193521	152945142	37	187										
GBX1	2636	hgsc.bcm.edu	37	chr7	150864240	150864240	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0465116279069767	4	0.943798451584757	1.23690922730683	3.3241935483871	0.428928199791883	0.559440559440559	1	0	ggctcggggttgtttcgggcGgcagtggcggcggcggcggc	23	10	0	0	rs13241978	byfrequency	TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	.	GBX1-68	NM_001098834	exon1	c.C396G	p.A132A	TCGGGCGGCAGTG	.	18	11	1	0	G|0.699;C|0.301	0	0	0	0	0	C	150864240	G	C	150864240	2	2	3	1	0	0	0	0	0	0	0	1	6300	1103	39	2		2	GBX1	7	150864240	Silent	SNP	G	TCGA-OR-A5J3-01A-11D-A29I-10	144670719	150864240	8274423	38	188										
SGK223	0	broad.mit.edu	37	chr8	8239069	8239069	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0465116279069767	4	0.943798451584757	1.23690922730683	3.3241935483871	0.428928199791883	0.559440559440559	1	0	tccaggcggcagttctcaggCctgggaggcaggcgcggtgg	19	11	1	0	novel		TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	.	.	NM_001080826	exon1	c.G189T	p.R63S	CTCAGGCCTGGGA	.	89	4	58	0	.	0	0	0	0	0	A	8239069	C	A	8239069	3	1	3	1	0	0	0	0	1	0	0	0	14245	738	26	3	4039	3	SGK223	8	8239069	Missense_Mutation	SNP	C	TCGA-OR-A5J3-01A-11D-A29I-10		8239069	138124953	39	189										
KCNB2	9312	broad.mit.edu	37	chr8	73850257	73850257	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0465116279069767	4	0.943798451584757	1.23690922730683	3.3241935483871	0.428928199791883	0.559440559440559	1	0	tgcaagatggaaaatcacttGtttgccccagaaattcattc	7	9	2	2	novel		TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	.	KCNB2-158	NM_004770	exon3	c.G2667T	p.L889F	TCACTTGTTTGCC	.	205	5	236	0	.	0	0	0	0	0	T	73850257	G	T	73850257	3	4	3	1	0	0	0	0	1	0	0	0	8034	1368	48	3	2673	3	KCNB2	8	73850257	Missense_Mutation	SNP	G	TCGA-OR-A5J3-01A-11D-A29I-10	65611188	73850257	72513765	40	190										
E2F5	1875	hgsc.bcm.edu	37	chr8	86089787	86089787	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0465116279069767	4	0.943798451584757	1.23690922730683	3.3241935483871	0.428928199791883	0.559440559440559	1	0	ccgccgcagctcgggggcgcCgggggcggcagcagcaggca	20	15	0	0	rs12926	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	.	E2F5-415	NM_001083588	exon1	c.C132G	p.A44A	GGGCGCCGGGGGC	.	5	5	0	0	C|0.434;G|0.566	0	0	0	0	0	G	86089787	C	G	86089787	2	3	3	1	0	0	0	0	0	0	0	1	4881	639	23	2		2	E2F5	8	86089787	Silent	SNP	C	TCGA-OR-A5J3-01A-11D-A29I-10	12239530	86089787	60274235	41	191										
ADCY8	114	hgsc.bcm.edu	37	chr8	132052342	132052342	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0465116279069767	4	0.943798451584757	1.23690922730683	3.3241935483871	0.428928199791883	0.559440559440559	1	0	gtcgcctgacagctgcggcgCgtggtggttggggccgccgc	19	13	0	1	rs2228949	byfrequency	TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	.	ADCY8-157	NM_001115	exon1	c.G238A	p.A80T	GCGGCGCGTGGTG	.	14	13	0	0	C|0.979;T|0.021	0	0	0	0	0	T	132052342	C	T	132052342	3	4	3	1	0	0	0	0	1	0	0	0	300	768	27	1	3589	1	ADCY8	8	132052342	Missense_Mutation	SNP	C	TCGA-OR-A5J3-01A-11D-A29I-10	45962555	132052342	14311680	42	192										
PLEC	5339	hgsc.bcm.edu	37	chr8	145001588	145001588	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0465116279069767	4	0.943798451584757	1.23690922730683	3.3241935483871	0.428928199791883	0.559440559440559	1	0	ccaagcccacctgctcctgcCgcagctgctcccgcacagcc	8	22	0	0	rs11136334	byfrequency	TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	.	PLEC-141	NM_201380	exon27	c.G4157A	p.R1386Q	TCCTGCCGCAGCT	.	16	14	0	0	C|0.707;T|0.293	0	0	0	0	0	T	145001588	C	T	145001588	3	4	3	1	0	0	0	0	1	0	0	0	12081	652	23	1	9921	1	PLEC	8	145001588	Missense_Mutation	SNP	C	TCGA-OR-A5J3-01A-11D-A29I-10	12949246	145001588	1362434	43	193										
DAB2IP	153090	hgsc.bcm.edu	37	chr9	124535156	124535156	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0465116279069767	4	0.943798451584757	1.23690922730683	3.3241935483871	0.428928199791883	0.559440559440559	1	0	gctgcagctcagctggtggcCgggtggccggcccgggcaac	18	14	1	0	novel		TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	.	DAB2IP-91	NM_032552	exon12	c.C2265T	p.A755A	GGTGGCCGGGTGG	.	12	12	0	0	.	0	0	0	0	0	T	124535156	C	T	124535156	2	4	3	1	0	0	0	0	0	0	0	1	4225	639	23	1		1	DAB2IP	9	124535156	Silent	SNP	C	TCGA-OR-A5J3-01A-11D-A29I-10		124535156	16678275	44	194										
COL5A1	1289	broad.mit.edu	37	chr9	137727048	137727048	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0465116279069767	4	0.943798451584757	1.23690922730683	3.3241935483871	0.428928199791883	0.559440559440559	1	0	gcgccctggtggacggctgtGctgtgagtatcccgcgccgc	16	14	0	1	novel		TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	.	COL5A1-524	NM_000093	exon65	c.G5368T	p.A1790S	GGCTGTGCTGTGA	.	87	5	61	1	.	0	0	0	0	0	T	137727048	G	T	137727048	3	4	3	1	0	0	0	0	1	0	0	0	3702	1319	46	3	5626	3	COL5A1	9	137727048	Missense_Mutation	SNP	G	TCGA-OR-A5J3-01A-11D-A29I-10	13191892	137727048	3486383	45	195										
ANKRD30A	91074	ucsc.edu	37	chr10	37438605	37438605	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0465116279069767	4	0.943798451584757	1.23690922730683	3.3241935483871	0.428928199791883	0.559440559440559	1	0	ctaagaagccatctgccttcAaggtatttagttttattatt	6	7	2	1	novel		TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	.	ANKRD30A-161	NM_052997	exon10	c.A1402G	p.K468E	GCCTTCAAGGTAT	.	121	15	139	2	.	0	0	0	0	0	G	37438605	A	G	37438605	3	3	3	1	0	0	0	0	1	0	0	0	658	131	5	4	1440	4	ANKRD30A	10	37438605	Missense_Mutation	SNP	A	TCGA-OR-A5J3-01A-11D-A29I-10		37438605	98096142	46	196										
FAM21C	253725	bcgsc.ca	37	chr10	46224381	46224381	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0465116279069767	4	0.943798451584757	1.23690922730683	3.3241935483871	0.428928199791883	0.559440559440559	1	0	gaaatcaagaaacaagtggaCggactaatccgggaaaccaa	10	8	1	1	rs17157971	byfrequency	TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	.	FAM21C-91	NM_015262	exon3	c.C198T	p.D66D	AGTGGACGGACTA	.	152	8	203	2	C|0.945;T|0.055	1	1	0	0	0	T	46224381	C	T	46224381	2	4	3	1	0	0	0	0	0	0	0	1	5558	535	19	1		1	FAM21C	10	46224381	Silent	SNP	C	TCGA-OR-A5J3-01A-11D-A29I-10	8785776	46224381	89310366	47	197										
SPOCK2	9806	hgsc.bcm.edu	37	chr10	73848075	73848075	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0465116279069767	4	0.943798451584757	1.23690922730683	3.3241935483871	0.428928199791883	0.559440559440559	1	0	agcaccagccgcccgcagccCggggcgcgcatcgtggtctg	15	17	1	0	rs2306324		TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	.	SPOCK2-90	NM_001134434	exon2	c.G12A	p.P4P	GCAGCCCGGGGCG	.	5	5	0	0	C|0.870;T|0.130	3	3	0	0	0	T	73848075	C	T	73848075	2	4	3	1	0	0	0	0	0	0	0	1	15117	639	23	1		1	SPOCK2	10	73848075	Silent	SNP	C	TCGA-OR-A5J3-01A-11D-A29I-10	27623694	73848075	61686672	48	198										
PGAM1	5223	broad.mit.edu	37	chr10	99186071	99186071	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0465116279069767	4	0.943798451584757	1.23690922730683	3.3241935483871	0.428928199791883	0.559440559440559	1	0	cccagcccgccgccatggccGcctacaaactggtgctgatc	10	18	0	1	novel		TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	.	PGAM1-226	NM_002629	exon1	c.G7T	p.A3S	ATGGCCGCCTACA	.	218	6	99	0	.	285	283	1	0	1	T	99186071	G	T	99186071	3	4	3	1	0	0	0	0	1	0	0	0	11802	1087	38	2	9	2	PGAM1	10	99186071	Missense_Mutation	SNP	G	TCGA-OR-A5J3-01A-11D-A29I-10	25337996	99186071	36348676	49	199										
MUC5B	727897	hgsc.bcm.edu	37	chr11	1253980	1253980	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0465116279069767	4	0.943798451584757	1.23690922730683	3.3241935483871	0.428928199791883	0.559440559440559	1	0	caagggcgtacagctcagcgActggagggacggcgtctgca	16	11	2	0	rs202127660		TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	.	.	NM_002458	exon17	c.A2045G	p.D682G	TCAGCGACTGGAG	.	91	6	19	0	.	0	0	0	0	0	G	1253980	A	G	1253980	3	3	3	1	0	0	0	0	1	0	0	0	10007	275	10	4	2120	4	MUC5B	11	1253980	Missense_Mutation	SNP	A	TCGA-OR-A5J3-01A-11D-A29I-10		1253980	133752536	50	200										
DUSP8	1850	hgsc.bcm.edu	37	chr11	1578741	1578741	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0465116279069767	4	0.943798451584757	1.23690922730683	3.3241935483871	0.428928199791883	0.559440559440559	1	0	agcttcaggctgcgctcgtaCtccagcagctggcccaggaa	12	14	1	0	rs182736278		TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	.	DUSP8-226	NM_004420	exon7	c.G885A	p.E295E	CTCGTACTCCAGC	.	7	5	0	0	C|0.990;T|0.010	1	0	1	0	0	T	1578741	C	T	1578741	2	4	3	1	0	0	0	0	0	0	0	1	4842	564	20	3		3	DUSP8	11	1578741	Silent	SNP	C	TCGA-OR-A5J3-01A-11D-A29I-10	324761	1578741	133427775	51	201										
PTPRJ	5795	broad.mit.edu	37	chr11	48149412	48149412	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0465116279069767	4	0.943798451584757	1.23690922730683	3.3241935483871	0.428928199791883	0.559440559440559	1	0	tctggaaagtcagcgataacGagtcgtcatctaactatacc	8	10	4	0	novel		TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	.	PTPRJ-541	NM_001098503	exon7	c.G1174A	p.E392K	GATAACGAGTCGT	.	99	4	121	0	.	1	1	0	0	0	A	48149412	G	A	48149412	3	1	3	1	0	0	0	0	1	0	0	0	12839	1059	37	1	1200	1	PTPRJ	11	48149412	Missense_Mutation	SNP	G	TCGA-OR-A5J3-01A-11D-A29I-10	46570671	48149412	86857104	52	202										
TPCN2	219931	bcgsc.ca	37	chr11	68837957	68837957	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0465116279069767	4	0.943798451584757	1.23690922730683	3.3241935483871	0.428928199791883	0.559440559440559	1	0	tcttcttcatagtcttcactGtgataggtgagtgcaggtaa	10	7	5	2	novel		TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	.	TPCN2-90	NM_139075	exon9	c.G889T	p.V297L	TTCACTGTGATAG	.	16	3	35	0	.	0	0	0	0	0	T	68837957	G	T	68837957	3	4	3	1	0	0	0	0	1	0	0	0	16434	1377	48	3	923	3	TPCN2	11	68837957	Missense_Mutation	SNP	G	TCGA-OR-A5J3-01A-11D-A29I-10	20688545	68837957	66168559	53	203										
CNTN5	53942	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	100095508	100095508	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0465116279069767	4	0.943798451584757	1.23690922730683	3.3241935483871	0.428928199791883	0.559440559440559	1	0	gcagggtacagaccacagcaGacagtgtgtcagatgaggca	14	9	1	4	novel		TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	.	CNTN5-366	NM_001243270	exon15	c.G1969T	p.D657Y	ACAGCAGACAGTG	.	131	119	145	0	.	0	0	0	0	0	T	100095508	G	T	100095508	3	4	3	1	0	0	0	0	1	0	0	0	3650	942	33	3	2023	3	CNTN5	11	100095508	Missense_Mutation	SNP	G	TCGA-OR-A5J3-01A-11D-A29I-10	31257551	100095508	34911008	54	204										
PPFIA2	8499	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	81777846	81777846	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0465116279069767	4	0.943798451584757	1.23690922730683	3.3241935483871	0.428928199791883	0.559440559440559	1	0	ggtgttcatttcttctgtttTaatgagatcctttcttgctg	8	7	4	1	novel		TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	.	PPFIA2-231	NM_001220476	exon8	c.A940G	p.K314E	CTGTTTTAATGAG	.	282	83	170	0	.	0	0	0	0	0	C	81777846	T	C	81777846	3	2	3	1	0	0	0	0	1	0	0	0	12339	1763	61	4	2929	4	PPFIA2	12	81777846	Missense_Mutation	SNP	T	TCGA-OR-A5J3-01A-11D-A29I-10		81777846	52074049	55	205										
ABCB9	23457	broad.mit.edu	37	chr12	123414623	123414623	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0465116279069767	4	0.943798451584757	1.23690922730683	3.3241935483871	0.428928199791883	0.559440559440559	1	0	actacgcggcccttgtccagCaccacaatgaggtgcgcgtg	12	14	0	1	novel		TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	.	ABCB9-90	NM_019625	exon12	c.G2136T	p.V712V	GTCCAGCACCACA	.	219	9	57	1	.	15	13	2	0	0	A	123414623	C	A	123414623	2	1	3	1	0	0	0	0	0	0	0	1	48	697	25	3		3	ABCB9	12	123414623	Silent	SNP	C	TCGA-OR-A5J3-01A-11D-A29I-10	41636777	123414623	10437272	56	206										
ATP6V0A2	23545	broad.mit.edu	37	chr12	124239085	124239085	+	Splice_Site	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0465116279069767	4	0.943798451584757	1.23690922730683	3.3241935483871	0.428928199791883	0.559440559440559	1	0	gcttagcctggctcacgcacGtaagttcctgcttagacctg	10	13	1	1	novel		TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	.	ATP6V0A2-92	NM_012463	exon18	c.2293+1G>A	.	ACGCACGTAAGTT	.	96	4	83	0	.	0	0	0	0	0	A	124239085	G	A	124239085	5	1	3	1	0	0	0	0	0	0	1	0	1170	1159	40	1	2364	1	ATP6V0A2	12	124239085	Splice_Site	SNP	G	TCGA-OR-A5J3-01A-11D-A29I-10	824462	124239085	9612810	57	207										
SPERT	220082	hgsc.bcm.edu	37	chr13	46288017	46288017	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0465116279069767	4	0.943798451584757	1.23690922730683	3.3241935483871	0.428928199791883	0.559440559440559	1	0	ggaaagcaagcccgccccctCaccccacgaggagccctgca	10	19	1	0	rs79707842		TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	.	SPERT-91	NM_152719	exon3	c.C857A	p.S286X	CCCCCTCACCCCA	.	9	9	0	0	C|0.925;A|0.075	0	0	0	0	0	A	46288017	C	A	46288017	4	1	3	1	0	0	0	0	0	1	0	0	15076	838	29	3	867	3	SPERT	13	46288017	Nonsense_Mutation	SNP	C	TCGA-OR-A5J3-01A-11D-A29I-10		46288017	68881861	58	208										
RTL1	388015	broad.mit.edu	37	chr14	101349017	101349017	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0465116279069767	4	0.943798451584757	1.23690922730683	3.3241935483871	0.428928199791883	0.559440559440559	1	0	atagggtctggggagagcgcAaacggctggtagctcttcat	15	8	3	1	rs6575805	byfrequency	TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	.	RTL1-46	NM_001134888	exon1	c.T2109C	p.F703F	GAGCGCAAACGGC	.	216	5	145	0	A|0.311;G|0.689	0	0	0	0	0	G	101349017	A	G	101349017	2	3	3	1	0	0	0	0	0	0	0	1	13759	127	5	4		4	RTL1	14	101349017	Silent	SNP	A	TCGA-OR-A5J3-01A-11D-A29I-10		101349017	6000523	59	209										
SPATA5L1	79029	hgsc.bcm.edu	37	chr15	45695445	45695445	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.0465116279069767	4	0.943798451584757	1.23690922730683	3.3241935483871	0.428928199791883	0.559440559440559	1	0	cgccccggcgctgcagggttCccggcctggggagaccgagg	18	15	0	1	rs143453038		TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	.	SPATA5L1-94	NM_024063	exon1	c.C818G	p.S273C	AGGGTTCCCGGCC	.	29	27	2	0	C|0.982;G|0.018	1	0	1	0	0	G	45695445	C	G	45695445	3	3	3	1	0	0	0	0	1	0	0	0	15049	855	30	3	820	3	SPATA5L1	15	45695445	Missense_Mutation	SNP	C	TCGA-OR-A5J3-01A-11D-A29I-10		45695445	56835947	60	210										
EME2	197342	hgsc.bcm.edu	37	chr16	1823444	1823444	+	Silent	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.0465116279069767	4	0.943798451584757	1.23690922730683	3.3241935483871	0.428928199791883	0.559440559440559	1	0	ctgctgcggccggagcaggtCctgaagcgcctcgcggtgtg	17	13	0	1	rs761065		TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	.	EME2-229	NM_001257370	exon1	c.C216G	p.V72V	GCAGGTCCTGAAG	.	8	8	0	0	C|0.615;G|0.385	0	0	0	0	0	G	1823444	C	G	1823444	2	3	3	1	0	0	0	0	0	0	0	1	5102	842	30	3		3	EME2	16	1823444	Silent	SNP	C	TCGA-OR-A5J3-01A-11D-A29I-10		1823444	88531309	61	211										
ZFP90	146198	broad.mit.edu	37	chr16	68597636	68597636	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0465116279069767	4	0.943798451584757	1.23690922730683	3.3241935483871	0.428928199791883	0.559440559440559	1	0	cctatcagtgtagtctctgtGggaaagccttccagcgcagc	11	12	2	0	novel		TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	.	ZFP90-91	NM_133458	exon4	c.G946T	p.G316W	CTCTGTGGGAAAG	.	159	5	83	0	.	10	10	0	0	0	T	68597636	G	T	68597636	3	4	3	1	0	0	0	0	1	0	0	0	17691	1348	47	3	960	3	ZFP90	16	68597636	Missense_Mutation	SNP	G	TCGA-OR-A5J3-01A-11D-A29I-10	66774192	68597636	21757117	62	212										
ZFPM1	161882	hgsc.bcm.edu	37	chr16	88599697	88599705	+	In_Frame_Del	DEL	AGCCTCTGG	AGCCTCTGG	-													0.0465116279069767	4	0.943798451584757	1.23690922730683	3.3241935483871	0.428928199791883	0.559440559440559	1	0	caacggagaggccagagcggAgcctctggcccagaatggag					novel		TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	AGCCTCTGG	AGCCTCTGG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	.	ZFPM1-90	NM_153813	exon10	c.1331_1339del	p.444_447del	GAGCGGAGCCTCT	.	15	0	1	0	.	0	0	0	0	0	-	88599705	AGCCTCTGG	-	88599697	7	5	3	1	0	1	0	1	0	0	0	0	17694	304	11	0	1369	0	ZFPM1	16	88599697	In_Frame_Del	DEL	AGCCTCTGG	TCGA-OR-A5J3-01A-11D-A29I-10	20002061	88599697	1755056	63	213										
KRTAP4-5	85289	hgsc.bcm.edu	37	chr17	39305773	39305774	+	Missense_Mutation	DNP	TC	TC	GG													0.0465116279069767	4	0.943798451584757	1.23690922730683	3.3241935483871	0.428928199791883	0.559440559440559	1	0	ggtggtcctgcagcaggtggTctggcagcagcaggggcggc					novel		TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	TC	TC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	.	KRTAP4-5-90	NM_033188	exon1	c.G246C	p.QT82HP	GGTGGTCTGGCAG	.	40	17	7	0	.	0	0	0	0	0	GG	39305774	TC	GG	39305773	3	3	3	1	0	0	0	0	1	0	0	0	8576	1667	58	5	302	5	KRTAP4-5	17	39305773	Missense_Mutation	DNP	TC	TCGA-OR-A5J3-01A-11D-A29I-10		39305773	41889437	64	214	5	2								
KRTAP4-5	85289	hgsc.bcm.edu	37	chr17	39305775	39305775	+	Missense_Mutation	SNP	T	T	C													0.0465116279069767	4	0.943798451584757	1.23690922730683	3.3241935483871	0.428928199791883	0.559440559440559	1	0	tggtcctgcagcaggtggtcTggcagcagcaggggcggcag					rs141265645		TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	.	KRTAP4-5-90	NM_033188	exon1	c.A245G	p.Q82R	GTGGTCTGGCAGC	.	42	35	5	0	.	0	0	0	0	0	C	39305775	T	C	39305775	3	2	3	1	0	0	0	0	1	0	0	0	8576	1580	55	4	304	4	KRTAP4-5	17	39305775	Missense_Mutation	SNP	T	TCGA-OR-A5J3-01A-11D-A29I-10	2	39305775	41889435	65	215	5	2								
HELZ	9931	bcgsc.ca	37	chr17	65190106	65190106	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0465116279069767	4	0.943798451584757	1.23690922730683	3.3241935483871	0.428928199791883	0.559440559440559	1	0	ttacacaaagtatattcctcGctgcttgtgattcccctagg	7	11	0	1	novel		TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	.	HELZ-92	NM_014877	exon9	c.C534A	p.S178R	TTCCTCGCTGCTT	.	82	4	114	0	.	0	0	0	0	0	T	65190106	G	T	65190106	3	4	3	1	0	0	0	0	1	0	0	0	7070	1078	38	2	5394	2	HELZ	17	65190106	Missense_Mutation	SNP	G	TCGA-OR-A5J3-01A-11D-A29I-10	25884331	65190106	16005104	66	216										
PRKAR1A	5573	hgsc.bcm.edu;bcgsc.ca	37	chr17	66526554	66526554	+	Frame_Shift_Del	DEL	C	C	-													0.0465116279069767	4	0.943798451584757	1.23690922730683	3.3241935483871	0.428928199791883	0.559440559440559	1	0	gacatcctcaaacgaaacatCcagcagtacaacagttttgt					novel		TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	.	PRKAR1A-1141	NM_212472	exon11	c.1110delC	p.I370fs	AAACATCCAGCAG	.	120	94	154	2	.	0	0	0	0	0	-	66526554	C	-	66526554	7	5	3	1	0	1	0	1	0	0	0	0	12535	845	30	0	1148	0	PRKAR1A	17	66526554	Frame_Shift_Del	DEL	C	TCGA-OR-A5J3-01A-11D-A29I-10	1336448	66526554	14668656	67	217										
ARID3A	1820	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	932572	932572	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0465116279069767	4	0.943798451584757	1.23690922730683	3.3241935483871	0.428928199791883	0.559440559440559	1	0	gcaccacggcactgttccccCgaaaggcccagccaccccag	9	20	0	0	novel		TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	.	ARID3A-90	NM_005224	exon3	c.C523G	p.R175G	TTCCCCCGAAAGG	.	105	35	12	0	.	1	1	0	0	0	G	932572	C	G	932572	3	3	3	1	0	0	0	0	1	0	0	0	916	644	23	2	529	2	ARID3A	19	932572	Missense_Mutation	SNP	C	TCGA-OR-A5J3-01A-11D-A29I-10		932572	58196411	68	218										
ABCA7	10347	hgsc.bcm.edu	37	chr19	1065044	1065044	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0465116279069767	4	0.943798451584757	1.23690922730683	3.3241935483871	0.428928199791883	0.559440559440559	1	0	ctgcgcgaggcacatggaggCcgcctgcgcttccagctgcc	14	16	0	0	rs4147935	byfrequency	TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	.	ABCA7-98	NM_019112	exon46	c.C6159T	p.G2053G	TGGAGGCCGCCTG	.	18	11	0	0	C|0.766;T|0.234	4	2	2	0	0	T	1065044	C	T	1065044	2	4	3	1	0	0	0	0	0	0	0	1	37	726	26	3		3	ABCA7	19	1065044	Silent	SNP	C	TCGA-OR-A5J3-01A-11D-A29I-10	132472	1065044	58063939	69	219										
PCSK4	54760	hgsc.bcm.edu	37	chr19	1482150	1482150	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0465116279069767	4	0.943798451584757	1.23690922730683	3.3241935483871	0.428928199791883	0.559440559440559	1	0	ccttgtgtggttgaagaaccGcggggggcagtaggccaggc	18	9	0	2	novel		TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	.	PCSK4-90	NM_017573	exon15	c.C1876T	p.R626W	AGAACCGCGGGGG	.	20	7	0	0	.	4	0	4	0	0	A	1482150	G	A	1482150	3	1	3	1	0	0	0	0	1	0	0	0	11631	1086	38	1	395	1	PCSK4	19	1482150	Missense_Mutation	SNP	G	TCGA-OR-A5J3-01A-11D-A29I-10	417106	1482150	57646833	70	220										
ANKRD24	170961	hgsc.bcm.edu	37	chr19	4217956	4217956	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0465116279069767	4	0.943798451584757	1.23690922730683	3.3241935483871	0.428928199791883	0.559440559440559	1	0	ctggagctgcggggccgggcAgccagtctggagcaggaggt	20	10	1	0	rs6510794	byfrequency	TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	.	ANKRD24-68	NM_133475	exon18	c.A2799G	p.A933A	CCGGGCAGCCAGT	.	4	4	0	0	A|0.541;G|0.459	1	0	1	0	0	G	4217956	A	G	4217956	2	3	3	1	0	0	0	0	0	0	0	1	653	175	7	4		4	ANKRD24	19	4217956	Silent	SNP	A	TCGA-OR-A5J3-01A-11D-A29I-10	2735806	4217956	54911027	71	221										
PLIN5	440503	hgsc.bcm.edu	37	chr19	4524016	4524016	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0465116279069767	4	0.943798451584757	1.23690922730683	3.3241935483871	0.428928199791883	0.559440559440559	1	0	ggcgccggcgggcaggccccGcacgctggactccagagcct	16	17	0	1	rs1062223	byfrequency	TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	.	PLIN5-22	NM_001013706	exon8	c.C916T	p.R306W	GGCCCCGCACGCT	.	6	6	0	0	G|0.892;A|0.108	0	0	0	0	0	A	4524016	G	A	4524016	3	1	3	1	0	0	0	0	1	0	0	0	12122	1086	38	1	479	1	PLIN5	19	4524016	Missense_Mutation	SNP	G	TCGA-OR-A5J3-01A-11D-A29I-10	306060	4524016	54604967	72	222										
C19orf10	56005	hgsc.bcm.edu	37	chr19	4670313	4670313	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0465116279069767	4	0.943798451584757	1.23690922730683	3.3241935483871	0.428928199791883	0.559440559440559	1	0	cgcggcccacaagctcgcgcCgacgccgttccaccctccgc	10	22	0	0	rs2270090	byfrequency	TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	.	C19orf10-90	NM_019107	exon1	c.G34C	p.G12R	TCGCGCCGACGCC	.	11	6	1	0	C|0.752;G|0.248	4	2	2	0	0	G	4670313	C	G	4670313	3	3	3	1	0	0	0	0	1	0	0	0	1914	652	23	2	511	2	C19orf10	19	4670313	Missense_Mutation	SNP	C	TCGA-OR-A5J3-01A-11D-A29I-10	146297	4670313	54458670	73	223										
HNRNPM	4670	hgsc.bcm.edu	37	chr19	8551112	8551112	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0465116279069767	4	0.943798451584757	1.23690922730683	3.3241935483871	0.428928199791883	0.559440559440559	1	0	cctgccatgggcccggccctGggcgctggcattgagcgcat	15	15	0	1	rs12977861	byfrequency	TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	.	HNRNPM-68	NM_005968	exon14	c.G1800T	p.L600L	GGCCCTGGGCGCT	.	20	10	0	0	G|0.960;T|0.040	75	37	38	0	0	T	8551112	G	T	8551112	2	4	3	1	0	0	0	0	0	0	0	1	7292	1335	47	3		3	HNRNPM	19	8551112	Silent	SNP	G	TCGA-OR-A5J3-01A-11D-A29I-10	3880799	8551112	50577871	74	224										
CCDC105	126402	hgsc.bcm.edu	37	chr19	15133926	15133926	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0465116279069767	4	0.943798451584757	1.23690922730683	3.3241935483871	0.428928199791883	0.559440559440559	1	0	gcagcaagagcagcgcggacCcctagtgaccccagcgtccc	12	17	0	2	rs8112667	byfrequency	TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	.	CCDC105-91	NM_173482	exon7	c.C1495A	p.P499T	GCGGACCCCTAGT	.	16	6	0	0	C|0.671;A|0.329	0	0	0	0	0	A	15133926	C	A	15133926	3	1	3	1	0	0	0	0	1	0	0	0	2746	623	22	3	1521	3	CCDC105	19	15133926	Missense_Mutation	SNP	C	TCGA-OR-A5J3-01A-11D-A29I-10	6582814	15133926	43995057	75	225										
UQCRFS1	7386	hgsc.bcm.edu	37	chr19	29704002	29704002	+	Silent	SNP	T	T	C													0.0465116279069767	4	0.943798451584757	1.23690922730683	3.3241935483871	0.428928199791883	0.559440559440559	1	0	aggacgggcgcgaacgggccTgagcgggatgctaccgacaa					rs11666764	byfrequency	TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	.	UQCRFS1-226	NM_006003	exon1	c.A24G	p.S8S	CGGGCCTGAGCGG	.	6	6	0	0	T|0.072;C|0.928	0	0	0	0	0	C	29704002	T	C	29704002	2	2	3	1	0	0	0	0	0	0	0	1	17059	1567	55	4		4	UQCRFS1	19	29704002	Silent	SNP	T	TCGA-OR-A5J3-01A-11D-A29I-10	14570076	29704002	29424981	76	226	6	2								
UQCRFS1	7386	hgsc.bcm.edu	37	chr19	29704010	29704010	+	Missense_Mutation	SNP	A	A	C													0.0465116279069767	4	0.943798451584757	1.23690922730683	3.3241935483871	0.428928199791883	0.559440559440559	1	0	cgcgaacgggcctgagcgggAtgctaccgacaacatggcga					rs8100724	byfrequency	TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	.	UQCRFS1-226	NM_006003	exon1	c.T16G	p.S6A	AGCGGGATGCTAC	.	7	7	0	0	A|0.065;C|0.935	0	0	0	0	0	C	29704010	A	C	29704010	3	2	3	1	0	0	0	0	1	0	0	0	17059	333	12	5	816	5	UQCRFS1	19	29704010	Missense_Mutation	SNP	A	TCGA-OR-A5J3-01A-11D-A29I-10	8	29704010	29424973	77	227	6	2								
LRP3	4037	hgsc.bcm.edu	37	chr19	33698018	33698018	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0465116279069767	4	0.943798451584757	1.23690922730683	3.3241935483871	0.428928199791883	0.559440559440559	1	0	gctctttcaccggccgcgggCgccccgaggccagatcccac	12	19	2	1	rs11539586		TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	.	LRP3-92	NM_002333	exon7	c.C1850T	p.A617V	CGCGGGCGCCCCG	.	22	14	2	0	T|0.000;G|0.967	42	12	29	0	1	T	33698018	C	T	33698018	3	4	3	1	0	0	0	0	1	0	0	0	8985	768	27	1	1876	1	LRP3	19	33698018	Missense_Mutation	SNP	C	TCGA-OR-A5J3-01A-11D-A29I-10	3994008	33698018	25430965	78	228										
BLOC1S3	388552	hgsc.bcm.edu	37	chr19	45682698	45682698	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0465116279069767	4	0.943798451584757	1.23690922730683	3.3241935483871	0.428928199791883	0.559440559440559	1	0	ggtccttcgggcccgacgcgCggccgccccacggggctgcg	17	18	0	0	rs182286598		TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	.	BLOC1S3-90	NM_212550	exon2	c.C144A	p.R48R	GACGCGCGGCCGC	.	33	20	1	0	C|0.995;A|0.005	0	0	0	0	0	A	45682698	C	A	45682698	2	1	3	1	0	0	0	0	0	0	0	1	1451	755	27	2		2	BLOC1S3	19	45682698	Silent	SNP	C	TCGA-OR-A5J3-01A-11D-A29I-10	11984680	45682698	13446285	79	229										
ERCC2	2068	hgsc.bcm.edu	37	chr19	45867259	45867259	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0465116279069767	4	0.943798451584757	1.23690922730683	3.3241935483871	0.428928199791883	0.559440559440559	1	0	ctcaccctgcagcacttcgtCgggcagcacggggttggcca	13	15	1	0	rs1799793	byfrequency	TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	.	ERCC2-848	NM_000400	exon10	c.G934A	p.D312N	CTTCGTCGGGCAG	.	14	11	0	0	C|0.804;T|0.196	22	9	13	0	0	T	45867259	C	T	45867259	3	4	3	1	0	0	0	0	1	0	0	0	5226	884	31	1	1461	1	ERCC2	19	45867259	Missense_Mutation	SNP	C	TCGA-OR-A5J3-01A-11D-A29I-10	184561	45867259	13261724	80	230										
PTGIR	5739	hgsc.bcm.edu	37	chr19	47127324	47127324	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0465116279069767	4	0.943798451584757	1.23690922730683	3.3241935483871	0.428928199791883	0.559440559440559	1	0	tcggtggccgccagtccggtCaccagcaccgcgaaggccga	14	16	1	0	rs2229128	byfrequency	TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	.	PTGIR-522	NM_000960	exon2	c.G159C	p.V53V	TCCGGTCACCAGC	.	8	7	2	0	C|0.254;G|0.746	0	0	0	0	0	G	47127324	C	G	47127324	2	3	3	1	0	0	0	0	0	0	0	1	12784	813	29	3		3	PTGIR	19	47127324	Silent	SNP	C	TCGA-OR-A5J3-01A-11D-A29I-10	1260065	47127324	12001659	81	231										
PPP1R12C	54776	hgsc.bcm.edu	37	chr19	55628609	55628609	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0465116279069767	4	0.943798451584757	1.23690922730683	3.3241935483871	0.428928199791883	0.559440559440559	1	0	acctggtgcagggcgctgatAccgtcggcgttggtggagtc	17	10	0	1	rs66707428		TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	.	PPP1R12C-227	NM_017607	exon1	c.T303C	p.G101G	GCTGATACCGTCG	.	8	5	0	0	A|0.808;G|0.192	3	1	2	0	0	G	55628609	A	G	55628609	2	3	3	1	0	0	0	0	0	0	0	1	12388	378	14	4		4	PPP1R12C	19	55628609	Silent	SNP	A	TCGA-OR-A5J3-01A-11D-A29I-10	8501285	55628609	3500374	82	232										
IFNAR2	3455	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr21	34634996	34634996	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0465116279069767	4	0.943798451584757	1.23690922730683	3.3241935483871	0.428928199791883	0.559440559440559	1	0	cagtagctgggattacaagcGtgcatccctgtgccccagtg	12	12	0	0	novel		TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	.	IFNAR2-90	NM_000874	exon9	c.G971A	p.R324H	ACAAGCGTGCATC	.	27	13	38	0	.	2	1	1	0	0	A	34634996	G	A	34634996	3	1	3	1	0	0	0	0	1	0	0	0	7566	1145	40	1	1001	1	IFNAR2	21	34634996	Missense_Mutation	SNP	G	TCGA-OR-A5J3-01A-11D-A29I-10		34634996	13494899	83	233										
CLIC6	54102	hgsc.bcm.edu	37	chr21	36042584	36042584	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0465116279069767	4	0.943798451584757	1.23690922730683	3.3241935483871	0.428928199791883	0.559440559440559	1	0	tcgggtgagccgcagcaatcGggggacggcagcctctcgcc	16	14	1	1	rs13049239	byfrequency	TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	.	CLIC6-91	NM_053277	exon1	c.G897A	p.S299S	GCAATCGGGGGAC	.	11	5	0	0	G|0.803;A|0.197	0	0	0	0	0	A	36042584	G	A	36042584	2	1	3	1	0	0	0	0	0	0	0	1	3536	1103	39	1		1	CLIC6	21	36042584	Silent	SNP	G	TCGA-OR-A5J3-01A-11D-A29I-10	1407588	36042584	12087311	84	234										
PI4KA	5297	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr22	21088807	21088807	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0465116279069767	4	0.943798451584757	1.23690922730683	3.3241935483871	0.428928199791883	0.559440559440559	1	0	ggccaaatttctgctccaccGtcatgtgccaggcccctgcc	9	17	2	0	novel		TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	.	PI4KA-454	NM_058004	exon33	c.C3776T	p.T1259M	TCCACCGTCATGT	.	191	10	269	0	.	10	10	0	0	0	A	21088807	G	A	21088807	3	1	3	1	0	0	0	0	1	0	0	0	11902	1145	40	1	2624	1	PI4KA	22	21088807	Missense_Mutation	SNP	G	TCGA-OR-A5J3-01A-11D-A29I-10		21088807	30215759	85	235										
TAB1	10454	broad.mit.edu	37	chr22	39826114	39826114	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0465116279069767	4	0.943798451584757	1.23690922730683	3.3241935483871	0.428928199791883	0.559440559440559	1	0	tcttccgctcccggcccgccCactcgctcccgcctggcgag	10	22	1	0	novel		TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	.	TAB1-522	NM_006116	exon11	c.C1402A	p.H468N	CCCGCCCACTCGC	.	70	3	32	0	.	8	8	0	0	0	A	39826114	C	A	39826114	3	1	3	1	0	0	0	0	1	0	0	0	15532	594	21	3	1444	3	TAB1	22	39826114	Missense_Mutation	SNP	C	TCGA-OR-A5J3-01A-11D-A29I-10	18737307	39826114	11478452	86	236										
GPR174	84636	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	78426661	78426661	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0465116279069767	4	0.943798451584757	1.23690922730683	3.3241935483871	0.428928199791883	0.559440559440559	1	0	gttatatgaaagaaacaaaaCgagctgtgatatttatgata	8	3	0	4	novel		TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	.	GPR174-130	NM_032553	exon1	c.C157T	p.R53X	ACAAAACGAGCTG	.	104	86	91	1	.	0	0	0	0	0	T	78426661	C	T	78426661	4	4	3	1	0	0	0	0	0	1	0	0	6692	528	19	1	159	1	GPR174	23	78426661	Nonsense_Mutation	SNP	C	TCGA-OR-A5J3-01A-11D-A29I-10		78426661	76843899	87	237										
MAGEC1	9947	bcgsc.ca	37	chrX	140994407	140994407	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0465116279069767	4	0.943798451584757	1.23690922730683	3.3241935483871	0.428928199791883	0.559440559440559	1	0	ttttgagggttttccccagtCtcctctccagattcctatga	7	12	2	3	rs62611965	byfrequency	TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	.	MAGEC1-133	NM_005462	exon4	c.C1217G	p.S406C	CCCAGTCTCCTCT	.	93	5	114	0	C|0.933;G|0.067	0	0	0	0	0	G	140994407	C	G	140994407	3	3	3	1	0	0	0	0	1	0	0	0	9208	913	32	3	1223	3	MAGEC1	23	140994407	Missense_Mutation	SNP	C	TCGA-OR-A5J3-01A-11D-A29I-10	62567746	140994407	14276153	88	238			1	1		2	2	13	N	T_C	3.33363e-05
MAGEC1	9947	bcgsc.ca	37	chrX	140994419	140994419	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0465116279069767	4	0.943798451584757	1.23690922730683	3.3241935483871	0.428928199791883	0.559440559440559	1	0	tccccagtctcctctccagaTtcctatgacctcctccttct	3	19	3	2	rs138268726	byfrequency	TCGA-OR-A5J3-01A-11D-A29I-10	TCGA-OR-A5J3-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7691e5bf-7a03-4e6a-9873-74f2c8390a41	e93eca23-3968-4f0d-83c5-54657b7a2dea	.	MAGEC1-133	NM_005462	exon4	c.T1229C	p.I410T	TCCAGATTCCTAT	.	94	5	128	0	T|0.932;C|0.068	0	0	0	0	0	C	140994419	T	C	140994419	3	2	3	1	0	0	0	0	1	0	0	0	9208	1493	52	4	1235	4	MAGEC1	23	140994419	Missense_Mutation	SNP	T	TCGA-OR-A5J3-01A-11D-A29I-10	12	140994419	14276141	89	239			1	1		2	2	13	N	T_C	3.33363e-05
CLCNKA	1187	bcgsc.ca	37	chr1	16357147	16357147	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.108910891089109	22	0.00894912226699646	2.08683871540888	3.78950939457203	0.825601175288023	0.00304369518222121	0.062903033765905	11	agaagctgccatacctgccaCggattctgggccgcaacatc	10	14	1	1	rs45568437		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	CLCNKA-91	NM_004070	exon15	c.C1600T	p.R534W	CTGCCACGGATTC	.	163	6	175	0	.	0	0	0	0	0	T	16357147	C	T	16357147	3	4	4	1	0	0	0	0	1	0	0	0	3475	527	19	1	1654	1	CLCNKA	1	16357147	Missense_Mutation	SNP	C	TCGA-OR-A5J4-01A-11D-A29I-10		16357147	232893474	1	240										
PINK1	65018	hgsc.bcm.edu	37	chr1	20960230	20960230	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.108910891089109	22	0.00894912226699646	2.08683871540888	3.78950939457203	0.825601175288023	0.00304369518222121	0.062903033765905	11	cgcagggtcgggctcgggctCcctaaccgtctccgcttctt	12	16	2	0	rs45530340	byfrequency	TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	PINK1-380	NM_032409	exon1	c.C189T	p.L63L	CGGGCTCCCTAAC	.	5	4	0	0	C|0.868;T|0.132	0	0	0	0	0	T	20960230	C	T	20960230	2	4	4	1	0	0	0	0	0	0	0	1	11961	842	30	3		3	PINK1	1	20960230	Silent	SNP	C	TCGA-OR-A5J4-01A-11D-A29I-10	4603083	20960230	228290391	2	241										
AKR1A1	10327	broad.mit.edu	37	chr1	46032652	46032652	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.108910891089109	22	0.00894912226699646	2.08683871540888	3.78950939457203	0.825601175288023	0.00304369518222121	0.062903033765905	11	tggctgacctccagctggagTatctggacctgtacctgatg	12	11	1	2	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	AKR1A1-226	NM_006066	exon5	c.T316G	p.Y106D	CTGGAGTATCTGG	.	78	3	104	2	.	0	0	0	0	0	G	46032652	T	G	46032652	3	3	4	1	0	0	0	0	1	0	0	0	465	1638	57	5	326	5	AKR1A1	1	46032652	Missense_Mutation	SNP	T	TCGA-OR-A5J4-01A-11D-A29I-10	25072422	46032652	203217969	3	242										
SLC44A5	204962	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	75684227	75684227	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.108910891089109	22	0.00894912226699646	2.08683871540888	3.78950939457203	0.825601175288023	0.00304369518222121	0.062903033765905	11	atatcgtgggatgtcatcagGttttttcatggcccagtaat	10	7	3	0	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	SLC44A5-95	NM_001130058	exon17	c.C1477T	p.P493S	CATCAGGTTTTTT	.	171	50	177	0	.	0	0	0	0	0	A	75684227	G	A	75684227	3	1	4	1	0	0	0	0	1	0	0	0	14674	1261	44	3	825	3	SLC44A5	1	75684227	Missense_Mutation	SNP	G	TCGA-OR-A5J4-01A-11D-A29I-10	29651575	75684227	173566394	4	243										
DPYD	1806	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	97564178	97564178	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.108910891089109	22	0.00894912226699646	2.08683871540888	3.78950939457203	0.825601175288023	0.00304369518222121	0.062903033765905	11	gttccagataaggtccaaaaCttggcagtttctaaaaggaa	9	7	1	1	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	DPYD-278	NM_000110	exon21	c.G2633A	p.S878N	CCAAAACTTGGCA	.	64	31	60	0	.	0	0	0	0	0	T	97564178	C	T	97564178	3	4	4	1	0	0	0	0	1	0	0	0	4756	565	20	3	456	3	DPYD	1	97564178	Missense_Mutation	SNP	C	TCGA-OR-A5J4-01A-11D-A29I-10	21879951	97564178	151686443	5	244										
KCND3	3752	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	112329612	112329612	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.108910891089109	22	0.00894912226699646	2.08683871540888	3.78950939457203	0.825601175288023	0.00304369518222121	0.062903033765905	11	tctgattctggtggtaaatcCggctaaagttggaaacaatc	10	7	2	1	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	KCND3-155	NM_004980	exon3	c.G1223A	p.R408Q	TAAATCCGGCTAA	.	203	44	157	0	.	0	0	0	0	0	T	112329612	C	T	112329612	3	4	4	1	0	0	0	0	1	0	0	0	8041	652	23	1	768	1	KCND3	1	112329612	Missense_Mutation	SNP	C	TCGA-OR-A5J4-01A-11D-A29I-10	14765434	112329612	136921009	6	245										
SPTA1	6708	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	158641930	158641930	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.108910891089109	22	0.00894912226699646	2.08683871540888	3.78950939457203	0.825601175288023	0.00304369518222121	0.062903033765905	11	aagcactgctcatactgacgAtgacgctcgtcccacagttc	8	14	1	2	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	SPTA1-142	NM_003126	exon11	c.T1407C	p.H469H	CTGACGATGACGC	.	78	25	92	0	.	0	0	0	0	0	G	158641930	A	G	158641930	2	3	4	1	0	0	0	0	0	0	0	1	15153	330	12	4		4	SPTA1	1	158641930	Silent	SNP	A	TCGA-OR-A5J4-01A-11D-A29I-10	46312318	158641930	90608691	7	246										
C1orf226	400793	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	162353216	162353216	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.108910891089109	22	0.00894912226699646	2.08683871540888	3.78950939457203	0.825601175288023	0.00304369518222121	0.062903033765905	11	tggaaagagaagagagaggcAaagttctgcccaatggagag	15	5	1	4	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	C1orf226-1	NM_001135240	exon3	c.A691G	p.K231E	AGAGGCAAAGTTC	.	245	99	293	0	.	0	0	0	0	0	G	162353216	A	G	162353216	3	3	4	1	0	0	0	0	1	0	0	0	2038	131	5	4	701	4	C1orf226	1	162353216	Missense_Mutation	SNP	A	TCGA-OR-A5J4-01A-11D-A29I-10	3711286	162353216	86897405	8	247										
GPR161	23432	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	168059902	168059902	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.108910891089109	22	0.00894912226699646	2.08683871540888	3.78950939457203	0.825601175288023	0.00304369518222121	0.062903033765905	11	gtgaggtgtggggacaggccCaggtctgaaagacaaaattg	16	6	1	3	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	GPR161-90	NM_001267609	exon5	c.G1164C	p.L388L	CAGGCCCAGGTCT	.	69	28	79	0	.	0	0	0	0	0	G	168059902	C	G	168059902	2	3	4	1	0	0	0	0	0	0	0	1	6685	581	21	3		3	GPR161	1	168059902	Silent	SNP	C	TCGA-OR-A5J4-01A-11D-A29I-10	5706686	168059902	81190719	9	248										
CDC73	79577	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	193111054	193111054	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.108910891089109	22	0.00894912226699646	2.08683871540888	3.78950939457203	0.825601175288023	0.00304369518222121	0.062903033765905	11	tatggctaagaaaagatctaCtatcaagactgatctagatg	8	6	3	5	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	CDC73-1009	NM_024529	exon7	c.C587A	p.T196N	GATCTACTATCAA	.	213	80	337	0	.	0	0	0	0	0	A	193111054	C	A	193111054	3	1	4	1	0	0	0	0	1	0	0	0	3091	565	20	3	613	3	CDC73	1	193111054	Missense_Mutation	SNP	C	TCGA-OR-A5J4-01A-11D-A29I-10	25051152	193111054	56139567	10	249										
ASPM	259266	bcgsc.ca	37	chr1	197112533	197112533	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.108910891089109	22	0.00894912226699646	2.08683871540888	3.78950939457203	0.825601175288023	0.00304369518222121	0.062903033765905	11	ctttggccattaacatttacGgaattaaaggaagtttcagt	8	6	1	0	rs6677082	byfrequency	TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	ASPM-615	NM_001206846	exon3	c.C849T	p.S283S	ATTTACGGAATTA	.	125	5	107	0	G|0.240;A|0.760	0	0	0	0	0	A	197112533	G	A	197112533	2	1	4	1	0	0	0	0	0	0	0	1	1057	1103	39	1		1	ASPM	1	197112533	Silent	SNP	G	TCGA-OR-A5J4-01A-11D-A29I-10	4001479	197112533	52138088	11	250										
USH2A	7399	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	216062269	216062269	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.108910891089109	22	0.00894912226699646	2.08683871540888	3.78950939457203	0.825601175288023	0.00304369518222121	0.062903033765905	11	tttccaggagttctcaagtaTagacggccatgtagataaat	9	7	1	2	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	USH2A-115	NM_206933	exon41	c.A7722G	p.L2574L	CAAGTATAGACGG	.	62	26	66	0	.	0	0	0	0	0	C	216062269	T	C	216062269	2	2	4	1	0	0	0	0	0	0	0	1	17074	1393	49	4		4	USH2A	1	216062269	Silent	SNP	T	TCGA-OR-A5J4-01A-11D-A29I-10	18949736	216062269	33188352	12	251										
ATAD2B	54454	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	24086377	24086377	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.108910891089109	22	0.00894912226699646	2.08683871540888	3.78950939457203	0.825601175288023	0.00304369518222121	0.062903033765905	11	cattcattagctaatgctctGgcaaccaaggttttacctgt	7	10	2	0	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	ATAD2B-68	NM_001242338	exon12	c.C1353G	p.A451A	TGCTCTGGCAACC	.	99	49	113	0	.	0	0	0	0	0	C	24086377	G	C	24086377	2	2	4	1	0	0	0	0	0	0	0	1	1073	1335	47	3		3	ATAD2B	2	24086377	Silent	SNP	G	TCGA-OR-A5J4-01A-11D-A29I-10		24086377	219112996	13	252										
ALK	238	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	29445209	29445209	+	Splice_Site	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.108910891089109	22	0.00894912226699646	2.08683871540888	3.78950939457203	0.825601175288023	0.00304369518222121	0.062903033765905	11	ggtgtctctctgtggctttaCctgatgatcagggcttccat	11	10	3	2	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	ALK-3833	NM_004304	exon23	c.3515+1G>A	.	GCTTTACCTGATG	.	48	15	69	0	.	0	0	0	0	0	T	29445209	C	T	29445209	5	4	4	1	0	0	0	0	0	0	1	0	525	521	18	3	1378	3	ALK	2	29445209	Splice_Site	SNP	C	TCGA-OR-A5J4-01A-11D-A29I-10	5358832	29445209	213754164	14	253										
POLR1A	25885	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	86315734	86315734	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.108910891089109	22	0.00894912226699646	2.08683871540888	3.78950939457203	0.825601175288023	0.00304369518222121	0.062903033765905	11	agctgtcctgtgcaccatggCtggaaacgtgatagtcaact	11	10	1	1	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	POLR1A-93	NM_015425	exon6	c.G685A	p.A229T	CCATGGCTGGAAA	.	125	37	95	1	.	0	0	0	0	0	T	86315734	C	T	86315734	3	4	4	1	0	0	0	0	1	0	0	0	12238	797	28	3	4593	3	POLR1A	2	86315734	Missense_Mutation	SNP	C	TCGA-OR-A5J4-01A-11D-A29I-10	56870525	86315734	156883639	15	254										
GPAT2	150763	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	96697819	96697819	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.108910891089109	22	0.00894912226699646	2.08683871540888	3.78950939457203	0.825601175288023	0.00304369518222121	0.062903033765905	11	ggtctggcaacagcgacccaCaaaggggcgatacttcccca	11	14	1	0	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	GPAT2-90	NM_207328	exon3	c.G139C	p.V47L	GACCCACAAAGGG	.	692	133	505	1	.	0	0	0	0	0	G	96697819	C	G	96697819	3	3	4	1	0	0	0	0	1	0	0	0	6609	478	17	3	2328	3	GPAT2	2	96697819	Missense_Mutation	SNP	C	TCGA-OR-A5J4-01A-11D-A29I-10	10382085	96697819	146501554	16	255										
AFF3	3899	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	100210195	100210195	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.108910891089109	22	0.00894912226699646	2.08683871540888	3.78950939457203	0.825601175288023	0.00304369518222121	0.062903033765905	11	gcttctcgcaggtcacggagGagcgcagctccttgcggtgg	16	12	2	0	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	AFF3-230	NM_001025108	exon14	c.C2003G	p.S668C	ACGGAGGAGCGCA	.	92	18	60	1	.	0	0	0	0	0	C	100210195	G	C	100210195	3	2	4	1	0	0	0	0	1	0	0	0	358	1174	41	3	1796	3	AFF3	2	100210195	Missense_Mutation	SNP	G	TCGA-OR-A5J4-01A-11D-A29I-10	3512376	100210195	142989178	17	256										
IL18R1	8809	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	103006523	103006523	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.108910891089109	22	0.00894912226699646	2.08683871540888	3.78950939457203	0.825601175288023	0.00304369518222121	0.062903033765905	11	ctttcttttctagcagacatGgctgatatcccaggccacgt	8	12	2	2	rs149204147	alternate_allele	TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	IL18R1-93	NM_003855	exon8	c.G957T	p.M319I	AGACATGGCTGAT	.	113	34	116	0	G|1.000;A|0.000	0	0	0	0	0	T	103006523	G	T	103006523	3	4	4	1	0	0	0	0	1	0	0	0	7668	1348	47	3	987	3	IL18R1	2	103006523	Missense_Mutation	SNP	G	TCGA-OR-A5J4-01A-11D-A29I-10	2796328	103006523	140192850	18	257										
FBLN7	129804	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	112944994	112944994	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.108910891089109	22	0.00894912226699646	2.08683871540888	3.78950939457203	0.825601175288023	0.00304369518222121	0.062903033765905	11	ggcctcagacgctggaggtgGacgtcgacatgtcggaatac	15	10	1	1	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	FBLN7-69	NM_153214	exon8	c.G1231C	p.D411H	GAGGTGGACGTCG	.	88	30	56	1	.	0	0	0	0	0	C	112944994	G	C	112944994	3	2	4	1	0	0	0	0	1	0	0	0	5720	1174	41	3	1261	3	FBLN7	2	112944994	Missense_Mutation	SNP	G	TCGA-OR-A5J4-01A-11D-A29I-10	9938471	112944994	130254379	19	258										
CLASP1	23332	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	122205879	122205879	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.108910891089109	22	0.00894912226699646	2.08683871540888	3.78950939457203	0.825601175288023	0.00304369518222121	0.062903033765905	11	tgtggtacttccagtaggacTtcttttggcagacagcggac	12	9	1	1	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	CLASP1-91	NM_001207051	exon18	c.A1714T	p.S572C	TAGGACTTCTTTT	.	43	17	59	0	.	0	0	0	0	0	A	122205879	T	A	122205879	3	1	4	1	0	0	0	0	1	0	0	0	3460	1609	56	5	3046	5	CLASP1	2	122205879	Missense_Mutation	SNP	T	TCGA-OR-A5J4-01A-11D-A29I-10	9260885	122205879	120993494	20	259										
MYO7B	4648	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	128347750	128347750	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.108910891089109	22	0.00894912226699646	2.08683871540888	3.78950939457203	0.825601175288023	0.00304369518222121	0.062903033765905	11	ctgatgaaaatcctgaccaaCtgccagccttacttcatccg	6	14	1	3	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	MYO7B-47	NM_001080527	exon16	c.C1938A	p.N646K	GACCAACTGCCAG	.	168	38	141	0	.	0	0	0	0	0	A	128347750	C	A	128347750	3	1	4	1	0	0	0	0	1	0	0	0	10111	564	20	3	1996	3	MYO7B	2	128347750	Missense_Mutation	SNP	C	TCGA-OR-A5J4-01A-11D-A29I-10	6141871	128347750	114851623	21	260										
TTN	7273	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr2	179621430	179621430	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.108910891089109	22	0.00894912226699646	2.08683871540888	3.78950939457203	0.825601175288023	0.00304369518222121	0.062903033765905	11	atttccttttgagatattttGctctcctcctttgtgaaaga	6	8	1	3	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	TTN-636	NM_001267550	exon46	c.C10773A	p.S3591R	TATTTTGCTCTCC	.	96	7	63	0	.	0	0	0	0	0	T	179621430	G	T	179621430	3	4	4	1	0	0	0	0	1	0	0	0	16773	1310	46	3	100483	3	TTN	2	179621430	Missense_Mutation	SNP	G	TCGA-OR-A5J4-01A-11D-A29I-10	51273680	179621430	63577943	22	261										
PARD3B	117583	bcgsc.ca	37	chr2	206364737	206364737	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.108910891089109	22	0.00894912226699646	2.08683871540888	3.78950939457203	0.825601175288023	0.00304369518222121	0.062903033765905	11	gaaggaagagcaaggccatcTgagtatgacctactctgggt	13	8	2	3	rs10197347	byfrequency	TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	PARD3B-140	NM_152526	exon20	c.T2976C	p.S992S	GCCATCTGAGTAT	.	110	5	155	1	T|0.587;C|0.413	0	0	0	0	0	C	206364737	T	C	206364737	2	2	4	1	0	0	0	0	0	0	0	1	11473	1567	55	4		4	PARD3B	2	206364737	Silent	SNP	T	TCGA-OR-A5J4-01A-11D-A29I-10	26743307	206364737	36834636	23	262										
CRYGB	1419	bcgsc.ca	37	chr2	209007559	209007559	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.108910891089109	22	0.00894912226699646	2.08683871540888	3.78950939457203	0.825601175288023	0.00304369518222121	0.062903033765905	11	gaagcggtcctgaacagagaTacagtcgtctgtgagctctg	13	9	2	3	rs796287	byfrequency	TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	CRYGB-90	NM_005210	exon3	c.A331C	p.I111L	CAGAGATACAGTC	.	151	6	195	0	G|0.655;N|0.000	0	0	0	0	0	G	209007559	T	G	209007559	3	3	4	1	0	0	0	0	1	0	0	0	3921	1406	49	5	200	5	CRYGB	2	209007559	Missense_Mutation	SNP	T	TCGA-OR-A5J4-01A-11D-A29I-10	2642822	209007559	34191814	24	263										
PIKFYVE	200576	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	209216103	209216103	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.108910891089109	22	0.00894912226699646	2.08683871540888	3.78950939457203	0.825601175288023	0.00304369518222121	0.062903033765905	11	atttattttgaagcaaatgcCtcgtctggaagtccagtcct	8	9	1	1	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	PIKFYVE-583	NM_015040	exon38	c.C5639G	p.P1880R	AAATGCCTCGTCT	.	49	18	79	0	.	0	0	0	0	0	G	209216103	C	G	209216103	3	3	4	1	0	0	0	0	1	0	0	0	11953	681	24	3	5796	3	PIKFYVE	2	209216103	Missense_Mutation	SNP	C	TCGA-OR-A5J4-01A-11D-A29I-10	208544	209216103	33983270	25	264										
TMEM169	92691	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	216960742	216960742	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.108910891089109	22	0.00894912226699646	2.08683871540888	3.78950939457203	0.825601175288023	0.00304369518222121	0.062903033765905	11	gcttccaagcccccaccaggGctctctcaggaaggctgtgg	12	15	2	0	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	TMEM169-69	NM_001142310	exon3	c.G56A	p.G19D	ACCAGGGCTCTCT	.	72	32	63	0	.	0	0	0	0	0	A	216960742	G	A	216960742	3	1	4	1	0	0	0	0	1	0	0	0	16121	1203	42	3	58	3	TMEM169	2	216960742	Missense_Mutation	SNP	G	TCGA-OR-A5J4-01A-11D-A29I-10	7744639	216960742	26238631	26	265										
SETMAR	6419	broad.mit.edu	37	chr3	4355141	4355141	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.108910891089109	22	0.00894912226699646	2.08683871540888	3.78950939457203	0.825601175288023	0.00304369518222121	0.062903033765905	11	gattcctgtccgaattgactCaatggtacctaagttggcac	9	10	1	1	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	SETMAR-91	NM_006515	exon2	c.C716T	p.S239L	TTGACTCAATGGT	.	206	5	227	0	.	0	0	0	0	0	T	4355141	C	T	4355141	3	4	4	1	0	0	0	0	1	0	0	0	14175	838	29	3	722	3	SETMAR	3	4355141	Missense_Mutation	SNP	C	TCGA-OR-A5J4-01A-11D-A29I-10		4355141	193667289	27	266										
KCNH8	131096	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	19554465	19554465	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.108910891089109	22	0.00894912226699646	2.08683871540888	3.78950939457203	0.825601175288023	0.00304369518222121	0.062903033765905	11	attatccactgatttagtcaGagcccaagggaaatggcaac	9	9	1	2	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	KCNH8-524	NM_144633	exon13	c.G2083T	p.E695X	TAGTCAGAGCCCA	.	141	51	171	1	.	0	0	0	0	0	T	19554465	G	T	19554465	4	4	4	1	0	0	0	0	0	1	0	0	8059	943	33	3	2133	3	KCNH8	3	19554465	Nonsense_Mutation	SNP	G	TCGA-OR-A5J4-01A-11D-A29I-10	15199324	19554465	178467965	28	267										
SCN11A	11280	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	38966970	38966970	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.108910891089109	22	0.00894912226699646	2.08683871540888	3.78950939457203	0.825601175288023	0.00304369518222121	0.062903033765905	11	gtacgcaggggcaatagtttGatggtgattcctggaatata	13	5	0	2	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	SCN11A-99	NM_014139	exon5	c.C648G	p.I216M	TAGTTTGATGGTG	.	177	85	240	0	.	0	0	0	0	0	C	38966970	G	C	38966970	3	2	4	1	0	0	0	0	1	0	0	0	13948	1280	45	3	4815	3	SCN11A	3	38966970	Missense_Mutation	SNP	G	TCGA-OR-A5J4-01A-11D-A29I-10	19412505	38966970	159055460	29	268										
LRIG1	26018	hgsc.bcm.edu	37	chr3	66550762	66550762	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.108910891089109	22	0.00894912226699646	2.08683871540888	3.78950939457203	0.825601175288023	0.00304369518222121	0.062903033765905	11	cggctccagccgaagcaaaaGcagccagagaaggagaaggc	14	11	0	2	rs1403626	byfrequency	TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	LRIG1-230	NM_015541	exon1	c.C70G	p.L24V	GCAAAAGCAGCCA	.	4	4	0	0	G|0.252;C|0.748	0	0	0	0	0	C	66550762	G	C	66550762	3	2	4	1	0	0	0	0	1	0	0	0	8971	971	34	3	3287	3	LRIG1	3	66550762	Missense_Mutation	SNP	G	TCGA-OR-A5J4-01A-11D-A29I-10	27583792	66550762	131471668	30	269										
CHMP2B	25978	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	87294944	87294944	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.108910891089109	22	0.00894912226699646	2.08683871540888	3.78950939457203	0.825601175288023	0.00304369518222121	0.062903033765905	11	aaacaacttgtgcatctacgGaaacagaagacgagaacttt	8	8	1	3	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	CHMP2B-229	NM_014043	exon3	c.G207A	p.R69R	TCTACGGAAACAG	.	303	109	263	0	.	0	0	0	0	0	A	87294944	G	A	87294944	2	1	4	1	0	0	0	0	0	0	0	1	3361	1161	41	3		3	CHMP2B	3	87294944	Silent	SNP	G	TCGA-OR-A5J4-01A-11D-A29I-10	20744182	87294944	110727486	31	270										
MYLK	4638	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	123419214	123419214	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.108910891089109	22	0.00894912226699646	2.08683871540888	3.78950939457203	0.825601175288023	0.00304369518222121	0.062903033765905	11	cgttgcccattggcttcaggGtctcagcaggcttggcgttg	14	11	2	0	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	MYLK-365	NM_053025	exon18	c.C3101A	p.T1034N	TTCAGGGTCTCAG	.	151	33	144	2	.	0	0	0	0	0	T	123419214	G	T	123419214	3	4	4	1	0	0	0	0	1	0	0	0	10084	1261	44	3	2711	3	MYLK	3	123419214	Missense_Mutation	SNP	G	TCGA-OR-A5J4-01A-11D-A29I-10	36124270	123419214	74603216	32	271										
SMC4	10051	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	160148934	160148934	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.108910891089109	22	0.00894912226699646	2.08683871540888	3.78950939457203	0.825601175288023	0.00304369518222121	0.062903033765905	11	ttagtattaagttgaaacttGaacaaatagatggtcacatt	7	4	1	3	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	SMC4-291	NM_005496	exon19	c.G3055C	p.E1019Q	AAACTTGAACAAA	.	227	54	192	0	.	0	0	0	0	0	C	160148934	G	C	160148934	3	2	4	1	0	0	0	0	1	0	0	0	14820	1291	45	3	3129	3	SMC4	3	160148934	Missense_Mutation	SNP	G	TCGA-OR-A5J4-01A-11D-A29I-10	36729720	160148934	37873496	33	272										
FXR1	8087	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	180687983	180687983	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.108910891089109	22	0.00894912226699646	2.08683871540888	3.78950939457203	0.825601175288023	0.00304369518222121	0.062903033765905	11	agcaatccatacagcttactTgataatacagaatcagatca	5	9	2	3	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	FXR1-153	NM_001013438	exon15	c.T1440A	p.L480L	CTTACTTGATAAT	.	232	26	224	0	.	0	0	0	0	0	A	180687983	T	A	180687983	2	1	4	1	0	0	0	0	0	0	0	1	6134	1799	63	5		5	FXR1	3	180687983	Silent	SNP	T	TCGA-OR-A5J4-01A-11D-A29I-10	20539049	180687983	17334447	34	273										
DGKG	1608	hgsc.bcm.edu	37	chr3	185985480	185985480	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.108910891089109	22	0.00894912226699646	2.08683871540888	3.78950939457203	0.825601175288023	0.00304369518222121	0.062903033765905	11	gcaggagcacttacccgggtGatggggcatatggaggtggg	19	7	0	1	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	DGKG-714	NM_001346	exon13	c.C1203A	p.I401I	CCGGGTGATGGGG	.	63	4	61	0	.	0	0	0	0	0	T	185985480	G	T	185985480	2	4	4	1	0	0	0	0	0	0	0	1	4480	1280	45	3		3	DGKG	3	185985480	Silent	SNP	G	TCGA-OR-A5J4-01A-11D-A29I-10	5297497	185985480	12036950	35	274										
ATP13A5	344905	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	193032830	193032830	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.108910891089109	22	0.00894912226699646	2.08683871540888	3.78950939457203	0.825601175288023	0.00304369518222121	0.062903033765905	11	cagtttggtttcttttttcaAgcgattctccatgatgagaa	8	7	3	2	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	ATP13A5-144	NM_198505	exon18	c.T2089C	p.L697L	TTTTCAAGCGATT	.	68	23	41	0	.	0	0	0	0	0	G	193032830	A	G	193032830	2	3	4	1	0	0	0	0	0	0	0	1	1128	69	3	4		4	ATP13A5	3	193032830	Silent	SNP	A	TCGA-OR-A5J4-01A-11D-A29I-10	7047350	193032830	4989600	36	275										
MUC4	4585	broad.mit.edu	37	chr3	195511814	195511814	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.108910891089109	22	0.00894912226699646	2.08683871540888	3.78950939457203	0.825601175288023	0.00304369518222121	0.062903033765905	11	tgtggatgctgaggaagggcTggtgacaggaagaggggtgg	22	3	0	3	rs72499650		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	MUC4-90	NM_018406	exon2	c.A6637G	p.S2213G	AAGGGCTGGTGAC	.	214	7	202	2	T|0.500;C|0.500	0	0	0	0	0	C	195511814	T	C	195511814	3	2	4	1	0	0	0	0	1	0	0	0	10006	1580	55	4		4	MUC4	3	195511814	Missense_Mutation	SNP	T	TCGA-OR-A5J4-01A-11D-A29I-10	2478984	195511814	2510616	37	276										
PIGG	54872	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr4	517287	517289	+	In_Frame_Del	DEL	CTT	CTT	-													0.108910891089109	22	0.00894912226699646	2.08683871540888	3.78950939457203	0.825601175288023	0.00304369518222121	0.062903033765905	11	caaggtggtcagagctagacCttcttattctgttggggacg					novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	CTT	CTT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	PIGG-92	NM_001127178	exon9	c.1654_1656del	p.552_552del	CTAGACCTTCTTA	.	248	64	212	0	.	0	0	0	0	0	-	517289	CTT	-	517287	7	5	4	1	0	1	0	1	0	0	0	0	11917	681	24	0	1688	0	PIGG	4	517287	In_Frame_Del	DEL	CTT	TCGA-OR-A5J4-01A-11D-A29I-10		517287	190636989	38	277										
NMU	10874	hgsc.bcm.edu	37	chr4	56502307	56502307	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.108910891089109	22	0.00894912226699646	2.08683871540888	3.78950939457203	0.825601175288023	0.00304369518222121	0.062903033765905	11	gcagcaggagcggggacgccGcggccacctgtccggcgggc	19	15	0	0	rs3828555	byfrequency	TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	NMU-650	NM_006681	exon1	c.C53A	p.A18E	GACGCCGCGGCCA	.	8	8	0	0	G|0.853;T|0.147	0	0	0	0	0	T	56502307	G	T	56502307	3	4	4	1	0	0	0	0	1	0	0	0	10534	1087	38	2	507	2	NMU	4	56502307	Missense_Mutation	SNP	G	TCGA-OR-A5J4-01A-11D-A29I-10	55985020	56502307	134651969	39	278										
DSPP	1834	bcgsc.ca	37	chr4	88537294	88537294	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.108910891089109	22	0.00894912226699646	2.08683871540888	3.78950939457203	0.825601175288023	0.00304369518222121	0.062903033765905	11	agtgacagcagcgacagcagTgacagcagcgatagcagcga	14	10	0	2	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	DSPP-90	NM_014208	exon5	c.T3480C	p.S1160S	CAGCAGTGACAGC	.	569	157	782	16	.	0	0	0	0	0	C	88537294	T	C	88537294	2	2	4	1	0	0	0	0	0	0	0	1	4793	1693	59	4		4	DSPP	4	88537294	Silent	SNP	T	TCGA-OR-A5J4-01A-11D-A29I-10	32034987	88537294	102616982	40	279										
SH3D19	152503	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	152043252	152043252	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.108910891089109	22	0.00894912226699646	2.08683871540888	3.78950939457203	0.825601175288023	0.00304369518222121	0.062903033765905	11	aagcttctcctctagctgatCtgtagaaactgtatgtagtt	8	8	3	2	rs199694166	alternate_allele	TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	SH3D19-92	NM_001009555	exon21	c.G2364C	p.Q788H	GCTGATCTGTAGA	.	49	19	77	0	C|0.999;A|0.001	0	0	0	0	0	G	152043252	C	G	152043252	3	3	4	1	0	0	0	0	1	0	0	0	14284	912	32	3	12	3	SH3D19	4	152043252	Missense_Mutation	SNP	C	TCGA-OR-A5J4-01A-11D-A29I-10	63505958	152043252	39111024	41	280										
DCHS2	54798	broad.mit.edu	37	chr4	155411939	155411939	+	Missense_Mutation	SNP	A	A	C													0.108910891089109	22	0.00894912226699646	2.08683871540888	3.78950939457203	0.825601175288023	0.00304369518222121	0.062903033765905	11	cggcgtccggatcgtgggcaActggcaggcggaaggcggtc					rs17373874	byfrequency	TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	DCHS2-94	NM_001142552	exon1	c.T569G	p.V190G	TGGGCAACTGGCA	.	147	4	111	1	A|0.633;C|0.367	0	0	0	0	0	C	155411939	A	C	155411939	3	2	4	1	0	0	0	0	1	0	0	0	4294	43	2	5	10515	5	DCHS2	4	155411939	Missense_Mutation	SNP	A	TCGA-OR-A5J4-01A-11D-A29I-10	3368687	155411939	35742337	42	281	7	2								
DCHS2	54798	broad.mit.edu	37	chr4	155411948	155411948	+	Missense_Mutation	SNP	C	C	A													0.108910891089109	22	0.00894912226699646	2.08683871540888	3.78950939457203	0.825601175288023	0.00304369518222121	0.062903033765905	11	gatcgtgggcaactggcaggCggaaggcggtccctggcggg					rs184619033		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	DCHS2-94	NM_001142552	exon1	c.G560T	p.R187L	GGCAGGCGGAAGG	.	152	3	112	0	C|0.997;A|0.003	0	0	0	0	0	A	155411948	C	A	155411948	3	1	4	1	0	0	0	0	1	0	0	0	4294	768	27	2	10524	2	DCHS2	4	155411948	Missense_Mutation	SNP	C	TCGA-OR-A5J4-01A-11D-A29I-10	9	155411948	35742328	43	282	7	2								
PDCD6	10016	broad.mit.edu	37	chr5	311455	311455	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.108910891089109	22	0.00894912226699646	2.08683871540888	3.78950939457203	0.825601175288023	0.00304369518222121	0.062903033765905	11	acatcctcattcgaaagtttGacaggcagggacgggggcag	14	9	1	1	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	PDCD6-290	NM_013232	exon5	c.G415C	p.D139H	AAGTTTGACAGGC	.	157	5	176	0	.	0	0	0	0	0	C	311455	G	C	311455	3	2	4	1	0	0	0	0	1	0	0	0	11652	1290	45	3	433	3	PDCD6	5	311455	Missense_Mutation	SNP	G	TCGA-OR-A5J4-01A-11D-A29I-10		311455	180603805	44	283										
RAD1	5810	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	34913589	34913589	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.108910891089109	22	0.00894912226699646	2.08683871540888	3.78950939457203	0.825601175288023	0.00304369518222121	0.062903033765905	11	gtttacctggcataggacttGatccaaaaatagataaacag	8	7	0	2	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	RAD1-227	NM_002853	exon3	c.C293G	p.S98X	GGACTTGATCCAA	.	232	52	195	0	.	0	0	0	0	0	C	34913589	G	C	34913589	4	2	4	1	0	0	0	0	0	1	0	0	13013	1294	45	3	571	3	RAD1	5	34913589	Nonsense_Mutation	SNP	G	TCGA-OR-A5J4-01A-11D-A29I-10	34602134	34913589	146001671	45	284										
EGFLAM	133584	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	38427121	38427121	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.108910891089109	22	0.00894912226699646	2.08683871540888	3.78950939457203	0.825601175288023	0.00304369518222121	0.062903033765905	11	gttttttcagctttcaccttGaccattcctcagttcagaga	6	11	4	2	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	EGFLAM-187	NM_001205301	exon14	c.G1821C	p.L607F	CACCTTGACCATT	.	61	27	46	0	.	0	0	0	0	0	C	38427121	G	C	38427121	3	2	4	1	0	0	0	0	1	0	0	0	4977	1281	45	3	1889	3	EGFLAM	5	38427121	Missense_Mutation	SNP	G	TCGA-OR-A5J4-01A-11D-A29I-10	3513532	38427121	142488139	46	285										
CARD6	84674	hgsc.bcm.edu;broad.mit.edu	37	chr5	40843294	40843294	+	Frame_Shift_Del	DEL	G	G	-													0.108910891089109	22	0.00894912226699646	2.08683871540888	3.78950939457203	0.825601175288023	0.00304369518222121	0.062903033765905	11	acagtacctcctcaatctatGggggcaagcagtaattcaga					novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	CARD6-230	NM_032587	exon2	c.324delG	p.M108fs	ATCTATGGGGGCA	.	54	13	28	0	.	0	0	0	0	0	-	40843294	G	-	40843294	7	5	4	1	0	1	0	1	0	0	0	0	2656	1348	47	0	330	0	CARD6	5	40843294	Frame_Shift_Del	DEL	G	TCGA-OR-A5J4-01A-11D-A29I-10	2416173	40843294	140071966	47	286										
ELOVL7	79993	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	60067796	60067796	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.108910891089109	22	0.00894912226699646	2.08683871540888	3.78950939457203	0.825601175288023	0.00304369518222121	0.062903033765905	11	gttatcattgctttcttgagTtcaaagggcttgcgattttc	9	7	3	1	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	ELOVL7-90	NM_001104558	exon3	c.A189G	p.E63E	CTTGAGTTCAAAG	.	219	61	176	0	.	0	0	0	0	0	C	60067796	T	C	60067796	2	2	4	1	0	0	0	0	0	0	0	1	5092	1722	60	4		4	ELOVL7	5	60067796	Silent	SNP	T	TCGA-OR-A5J4-01A-11D-A29I-10	19224502	60067796	120847464	48	287										
MAP1B	4131	hgsc.bcm.edu;bcgsc.ca	37	chr5	71492991	71492991	+	Frame_Shift_Del	DEL	C	C	-													0.108910891089109	22	0.00894912226699646	2.08683871540888	3.78950939457203	0.825601175288023	0.00304369518222121	0.062903033765905	11	accatcacccttagaaaagaCccccctgggtgaacgtagtg					novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	MAP1B-155	NM_005909	exon5	c.3809delC	p.T1270fs	AAAAGACCCCCCT	.	104	35	99	1	.	0	0	0	0	0	-	71492991	C	-	71492991	7	5	4	1	0	1	0	1	0	0	0	0	9256	507	18	0	3827	0	MAP1B	5	71492991	Frame_Shift_Del	DEL	C	TCGA-OR-A5J4-01A-11D-A29I-10	11425195	71492991	109422269	49	288										
MAP1B	4131	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	71495181	71495181	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.108910891089109	22	0.00894912226699646	2.08683871540888	3.78950939457203	0.825601175288023	0.00304369518222121	0.062903033765905	11	ctctgaggatggtggccacaCacttggggaccccagctact	12	13	1	1	rs113459978	alternate_allele	TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	MAP1B-155	NM_005909	exon5	c.C5999A	p.T2000K	GCCACACACTTGG	.	61	21	77	0	C|0.500;T|0.500	0	0	0	0	0	A	71495181	C	A	71495181	3	1	4	1	0	0	0	0	1	0	0	0	9256	478	17	3	6017	3	MAP1B	5	71495181	Missense_Mutation	SNP	C	TCGA-OR-A5J4-01A-11D-A29I-10	2190	71495181	109420079	50	289										
HOMER1	9456	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	78671991	78671991	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.108910891089109	22	0.00894912226699646	2.08683871540888	3.78950939457203	0.825601175288023	0.00304369518222121	0.062903033765905	11	tctaagtcagacagttgtccCtccaggtctttgttccgaat	8	11	3	1	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	HOMER1-90	NM_004272	exon9	c.C906C	p.L302L	TTGTCCCTCCAGG	.	88	20	93	0	.	0	0	0	0	0	G	78671991	C	G	78671991	2	3	4	1	0	0	0	0	0	0	0	1	7299	680	24	3		3	HOMER1	5	78671991	Silent	SNP	C	TCGA-OR-A5J4-01A-11D-A29I-10	7176810	78671991	102243269	51	290										
HSD17B4	3295	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr5	118844896	118844896	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.108910891089109	22	0.00894912226699646	2.08683871540888	3.78950939457203	0.825601175288023	0.00304369518222121	0.062903033765905	11	gttctctctctttcttgttgGctctggaggctttggtggaa	12	8	4	0	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	HSD17B4-92	NM_001199291	exon17	c.G1469A	p.G490D	TTGTTGGCTCTGG	.	50	4	40	0	.	0	0	0	0	0	A	118844896	G	A	118844896	3	1	4	1	0	0	0	0	1	0	0	0	7407	1203	42	3	1456	3	HSD17B4	5	118844896	Missense_Mutation	SNP	G	TCGA-OR-A5J4-01A-11D-A29I-10	40172905	118844896	62070364	52	291										
PCDHB6	56130	hgsc.bcm.edu	37	chr5	140531553	140531553	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.108910891089109	22	0.00894912226699646	2.08683871540888	3.78950939457203	0.825601175288023	0.00304369518222121	0.062903033765905	11	cggctccgcgccctgcaccgAgctggtgccccgggcggccg	16	19	0	0	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	PCDHB6-91	NM_018939	exon1	c.A1715G	p.E572G	GCACCGAGCTGGT	.	17	7	2	0	.	0	0	0	0	0	G	140531553	A	G	140531553	3	3	4	1	0	0	0	0	1	0	0	0	11575	304	11	4	1717	4	PCDHB6	5	140531553	Missense_Mutation	SNP	A	TCGA-OR-A5J4-01A-11D-A29I-10	21686657	140531553	40383707	53	292										
PCDHB11	56125	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	140579540	140579540	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.108910891089109	22	0.00894912226699646	2.08683871540888	3.78950939457203	0.825601175288023	0.00304369518222121	0.062903033765905	11	aactgtcctcacggggggctCgggtggtctctaatgataag	14	9	2	1	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	PCDHB11-96	NM_018931	exon1	c.C193T	p.R65W	GGGGCTCGGGTGG	.	62	17	33	0	.	0	0	0	0	0	T	140579540	C	T	140579540	3	4	4	1	0	0	0	0	1	0	0	0	11565	875	31	1	195	1	PCDHB11	5	140579540	Missense_Mutation	SNP	C	TCGA-OR-A5J4-01A-11D-A29I-10	47987	140579540	40335720	54	293										
PCDHGA5	56110	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	140746167	140746167	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.108910891089109	22	0.00894912226699646	2.08683871540888	3.78950939457203	0.825601175288023	0.00304369518222121	0.062903033765905	11	gcagacctattcccacgaggTctccctcaccgcggactcga	9	17	2	1	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	PCDHGA5-35	NM_032054	exon1	c.T2270G	p.V757G	ACGAGGTCTCCCT	.	169	48	168	4	.	0	0	0	0	0	G	140746167	T	G	140746167	3	3	4	1	0	0	0	0	1	0	0	0	11586	1667	58	5	2272	5	PCDHGA5	5	140746167	Missense_Mutation	SNP	T	TCGA-OR-A5J4-01A-11D-A29I-10	166627	140746167	40169093	55	294										
COL23A1	91522	broad.mit.edu	37	chr5	177673297	177673297	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.108910891089109	22	0.00894912226699646	2.08683871540888	3.78950939457203	0.825601175288023	0.00304369518222121	0.062903033765905	11	agcccaataaggcccggtggGccaactggcccctggataga	13	13	0	1	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	COL23A1-91	NM_173465	exon24	c.C1371A	p.G457G	CGGTGGGCCAACT	.	112	4	110	0	.	0	0	0	0	0	T	177673297	G	T	177673297	2	4	4	1	0	0	0	0	0	0	0	1	3688	1190	42	3		3	COL23A1	5	177673297	Silent	SNP	G	TCGA-OR-A5J4-01A-11D-A29I-10	36927130	177673297	3241963	56	295										
FLT4	2324	ucsc.edu;bcgsc.ca	37	chr5	180048131	180048131	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.108910891089109	22	0.00894912226699646	2.08683871540888	3.78950939457203	0.825601175288023	0.00304369518222121	0.062903033765905	11	ttttcctccagcagcctctcGtctttgtaccacacgatgct	6	15	2	0	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	FLT4-1490	NM_182925	exon14	c.C2142A	p.D714E	CCTCTCGTCTTTG	.	290	71	200	3	.	0	0	0	0	0	T	180048131	G	T	180048131	3	4	4	1	0	0	0	0	1	0	0	0	5963	1136	40	2	2025	2	FLT4	5	180048131	Missense_Mutation	SNP	G	TCGA-OR-A5J4-01A-11D-A29I-10	2374834	180048131	867129	57	296										
RREB1	6239	hgsc.bcm.edu	37	chr6	7230680	7230680	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.108910891089109	22	0.00894912226699646	2.08683871540888	3.78950939457203	0.825601175288023	0.00304369518222121	0.062903033765905	11	cggccgcggcctgggcggggGccacaagggccgcaagccct	18	16	0	0	rs9502564	byfrequency	TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	RREB1-144	NM_001003700	exon10	c.G2348T	p.G783V	GCGGGGGCCACAA	.	8	7	0	0	G|0.546;T|0.454	0	0	0	0	0	T	7230680	G	T	7230680	3	4	4	1	0	0	0	0	1	0	0	0	13714	1203	42	3	2374	3	RREB1	6	7230680	Missense_Mutation	SNP	G	TCGA-OR-A5J4-01A-11D-A29I-10		7230680	163884387	58	297										
NEDD9	4739	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	11185653	11185653	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.108910891089109	22	0.00894912226699646	2.08683871540888	3.78950939457203	0.825601175288023	0.00304369518222121	0.062903033765905	11	agtttgtgtgcactgaggatGacaaacttgctgtgtgccac	12	8	0	2	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	NEDD9-226	NM_001142393	exon8	c.C2247A	p.V749V	GAGGATGACAAAC	.	201	71	227	0	.	0	0	0	0	0	T	11185653	G	T	11185653	2	4	4	1	0	0	0	0	0	0	0	1	10342	1277	45	3		3	NEDD9	6	11185653	Silent	SNP	G	TCGA-OR-A5J4-01A-11D-A29I-10	3954973	11185653	159929414	59	298										
TRIM39	56658	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	30303702	30303702	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.108910891089109	22	0.00894912226699646	2.08683871540888	3.78950939457203	0.825601175288023	0.00304369518222121	0.062903033765905	11	gccgggacctggcccacttgGctgccgaggtggagggcaag	18	12	0	0	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	TRIM39-161	NM_021253	exon5	c.G730C	p.A244P	CACTTGGCTGCCG	.	123	15	98	1	.	0	0	0	0	0	C	30303702	G	C	30303702	3	2	4	1	0	0	0	0	1	0	0	0	16551	1203	42	3	740	3	TRIM39	6	30303702	Missense_Mutation	SNP	G	TCGA-OR-A5J4-01A-11D-A29I-10	19118049	30303702	140811365	60	299										
FKBPL	63943	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	32096557	32096557	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.108910891089109	22	0.00894912226699646	2.08683871540888	3.78950939457203	0.825601175288023	0.00304369518222121	0.062903033765905	11	ccagccctgcatcctggttcTtcccctgaatgaccaccttc	6	18	1	2	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	FKBPL-204	NM_022110	exon2	c.A1001T	p.K334M	TGGTTCTTCCCCT	.	213	40	130	0	.	0	0	0	0	0	A	32096557	T	A	32096557	3	1	4	1	0	0	0	0	1	0	0	0	5935	1609	56	5	52	5	FKBPL	6	32096557	Missense_Mutation	SNP	T	TCGA-OR-A5J4-01A-11D-A29I-10	1792855	32096557	139018510	61	300										
GLP1R	2740	bcgsc.ca	37	chr6	39033549	39033549	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.108910891089109	22	0.00894912226699646	2.08683871540888	3.78950939457203	0.825601175288023	0.00304369518222121	0.062903033765905	11	tctggctgcagaaggacaacTccagcctgccctggagggac	13	13	1	1	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	GLP1R-659	NM_002062	exon4	c.T346A	p.S116T	GACAACTCCAGCC	.	203	6	134	0	.	0	0	0	0	0	A	39033549	T	A	39033549	3	1	4	1	0	0	0	0	1	0	0	0	6472	1551	54	5	360	5	GLP1R	6	39033549	Missense_Mutation	SNP	T	TCGA-OR-A5J4-01A-11D-A29I-10	6936992	39033549	132081518	62	301										
LRFN2	57497	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr6	40399886	40399886	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.108910891089109	22	0.00894912226699646	2.08683871540888	3.78950939457203	0.825601175288023	0.00304369518222121	0.062903033765905	11	caggcggtcatcgggggctaCccagtggataagggggctgg	19	9	1	0	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	LRFN2-93	NM_020737	exon2	c.G967C	p.V323L	GGGCTACCCAGTG	.	75	6	43	0	.	0	0	0	0	0	G	40399886	C	G	40399886	3	3	4	1	0	0	0	0	1	0	0	0	8965	507	18	3	1410	3	LRFN2	6	40399886	Missense_Mutation	SNP	C	TCGA-OR-A5J4-01A-11D-A29I-10	1366337	40399886	130715181	63	302										
PTCRA	171558	hgsc.bcm.edu	37	chr6	42893140	42893140	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.108910891089109	22	0.00894912226699646	2.08683871540888	3.78950939457203	0.825601175288023	0.00304369518222121	0.062903033765905	11	cgcaaccaccacccgcctgcGagccctcggctcccatcgac	8	22	0	0	rs111782749	byfrequency	TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	PTCRA-92	NM_001243168	exon4	c.G611A	p.R204Q	GCCTGCGAGCCCT	.	41	24	0	0	G|0.995;A|0.005	0	0	0	0	0	A	42893140	G	A	42893140	3	1	4	1	0	0	0	0	1	0	0	0	12767	1058	37	1	580	1	PTCRA	6	42893140	Missense_Mutation	SNP	G	TCGA-OR-A5J4-01A-11D-A29I-10	2493254	42893140	128221927	64	303										
KLHDC3	116138	broad.mit.edu;bcgsc.ca	37	chr6	42985302	42985302	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.108910891089109	22	0.00894912226699646	2.08683871540888	3.78950939457203	0.825601175288023	0.00304369518222121	0.062903033765905	11	cccggtgaagtctgccatccGtgggcaagctcctgtggtac	13	13	1	1	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	KLHDC3-91	NM_057161	exon3	c.G200A	p.R67H	CCATCCGTGGGCA	.	258	13	203	1	.	0	0	0	0	0	A	42985302	G	A	42985302	3	1	4	1	0	0	0	0	1	0	0	0	8378	1145	40	1	206	1	KLHDC3	6	42985302	Missense_Mutation	SNP	G	TCGA-OR-A5J4-01A-11D-A29I-10	92162	42985302	128129765	65	304										
PGK2	5232	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	49754247	49754247	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.108910891089109	22	0.00894912226699646	2.08683871540888	3.78950939457203	0.825601175288023	0.00304369518222121	0.062903033765905	11	ttgataagttggatcttgtcTgccactttggctccaccaag	9	10	2	1	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	PGK2-91	NM_138733	exon1	c.A654G	p.A218A	CTTGTCTGCCACT	.	356	71	241	0	.	0	0	0	0	0	C	49754247	T	C	49754247	2	2	4	1	0	0	0	0	0	0	0	1	11820	1567	55	4		4	PGK2	6	49754247	Silent	SNP	T	TCGA-OR-A5J4-01A-11D-A29I-10	6768945	49754247	121360820	66	305										
HMGCLL1	54511	broad.mit.edu	37	chr6	55300530	55300530	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.108910891089109	22	0.00894912226699646	2.08683871540888	3.78950939457203	0.825601175288023	0.00304369518222121	0.062903033765905	11	cagctttgcaaataaagtcaCcagcttccatcactttgtat	5	11	2	0	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	HMGCLL1-94	NM_019036	exon10	c.G1043T	p.G348V	AAGTCACCAGCTT	.	126	3	74	0	.	0	0	0	0	0	A	55300530	C	A	55300530	3	1	4	1	0	0	0	0	1	0	0	0	7251	507	18	3	73	3	HMGCLL1	6	55300530	Missense_Mutation	SNP	C	TCGA-OR-A5J4-01A-11D-A29I-10	5546283	55300530	115814537	67	306										
DST	667	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr6	56434803	56434805	+	In_Frame_Del	DEL	CTT	CTT	-													0.108910891089109	22	0.00894912226699646	2.08683871540888	3.78950939457203	0.825601175288023	0.00304369518222121	0.062903033765905	11	ttcttgacaagaagttacagCttcttttctacataacaaaa					novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	CTT	CTT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	DST-523	NM_015548	exon35	c.5858_5860del	p.1953_1954del	TTACAGCTTCTTT	.	36	11	39	0	.	0	0	0	0	0	-	56434805	CTT	-	56434803	7	5	4	1	0	1	0	1	0	0	0	0	4794	797	28	0	9855	0	DST	6	56434803	In_Frame_Del	DEL	CTT	TCGA-OR-A5J4-01A-11D-A29I-10	1134273	56434803	114680264	68	307										
FILIP1	27145	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	76022190	76022190	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.108910891089109	22	0.00894912226699646	2.08683871540888	3.78950939457203	0.825601175288023	0.00304369518222121	0.062903033765905	11	cgtcactttgcttgcaccagGccgtgaggagaggtgattcc	13	11	1	3	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	FILIP1-94	NM_015687	exon5	c.C3358G	p.P1120A	CACCAGGCCGTGA	.	435	83	302	0	.	0	0	0	0	0	C	76022190	G	C	76022190	3	2	4	1	0	0	0	0	1	0	0	0	5913	1203	42	3	291	3	FILIP1	6	76022190	Missense_Mutation	SNP	G	TCGA-OR-A5J4-01A-11D-A29I-10	19587387	76022190	95092877	69	308										
BACH2	60468	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	90660029	90660030	+	Missense_Mutation	DNP	GC	GC	AT													0.108910891089109	22	0.00894912226699646	2.08683871540888	3.78950939457203	0.825601175288023	0.00304369518222121	0.062903033765905	11	caggacacgactcactgtctGcttccgagaacgatccggat					novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	GC	GC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	BACH2-231	NM_021813	exon7	c.G1795A	p.A599I	TGTCTGCTTCCGA	.	241	0	98	0	.	0	0	0	0	0	AT	90660030	GC	AT	90660029	3	1	4	1	0	0	0	0	1	0	0	0	1285	1319	46	3	741	3	BACH2	6	90660029	Missense_Mutation	DNP	GC	TCGA-OR-A5J4-01A-11D-A29I-10	14637839	90660029	80455038	70	309										
HACE1	57531	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	105219214	105219214	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.108910891089109	22	0.00894912226699646	2.08683871540888	3.78950939457203	0.825601175288023	0.00304369518222121	0.062903033765905	11	taaaatccattgcaaattttTcgcatattctggatcaatgg	6	7	2	0	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	HACE1-663	NM_020771	exon19	c.A2065C	p.K689Q	AATTTTTCGCATA	.	89	36	69	0	.	0	0	0	0	0	G	105219214	T	G	105219214	3	3	4	1	0	0	0	0	1	0	0	0	6961	1792	62	5	688	5	HACE1	6	105219214	Missense_Mutation	SNP	T	TCGA-OR-A5J4-01A-11D-A29I-10	14559185	105219214	65895853	71	310										
RSPO3	84870	broad.mit.edu	37	chr6	127516969	127516969	+	Frame_Shift_Del	DEL	A	A	-													0.108910891089109	22	0.00894912226699646	2.08683871540888	3.78950939457203	0.825601175288023	0.00304369518222121	0.062903033765905	11	gagtatcctttcatttcaggAaaaaaaggaagggagaggaa					novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	RSPO3-90	NM_032784	exon5	c.636delA	p.G212fs	TTCAGGAAAAAAA	.	5	2	5	0	.	0	0	0	0	0	-	127516969	A	-	127516969	7	5	4	1	0	1	0	1	0	0	0	0	13746	260	9	0	654	0	RSPO3	6	127516969	Frame_Shift_Del	DEL	A	TCGA-OR-A5J4-01A-11D-A29I-10	22297755	127516969	43598098	72	311										
AHI1	54806	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	135726087	135726087	+	Splice_Site	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.108910891089109	22	0.00894912226699646	2.08683871540888	3.78950939457203	0.825601175288023	0.00304369518222121	0.062903033765905	11	cctggtaataaaaactacttActtttgcagcacaggaacgt	7	9	0	0	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	AHI1-227	NM_001134830	exon21	c.2988+2T>G	.	CTACTTACTTTTG	.	49	14	54	0	.	0	0	0	0	0	C	135726087	A	C	135726087	5	2	4	1	0	0	0	0	0	0	1	0	413	405	14	5	689	5	AHI1	6	135726087	Splice_Site	SNP	A	TCGA-OR-A5J4-01A-11D-A29I-10	8209118	135726087	35388980	73	312										
MAP3K4	4216	broad.mit.edu;bcgsc.ca	37	chr6	161527654	161527654	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.108910891089109	22	0.00894912226699646	2.08683871540888	3.78950939457203	0.825601175288023	0.00304369518222121	0.062903033765905	11	gaatatcattggtcaagtttGtgatacgcctaagtcctatg	9	7	2	1	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	MAP3K4-548	NM_005922	exon20	c.G3965A	p.C1322Y	AAGTTTGTGATAC	.	176	8	255	0	.	0	0	0	0	0	A	161527654	G	A	161527654	3	1	4	1	0	0	0	0	1	0	0	0	9280	1377	48	3	4043	3	MAP3K4	6	161527654	Missense_Mutation	SNP	G	TCGA-OR-A5J4-01A-11D-A29I-10	25801567	161527654	9587413	74	313										
TNRC18	84629	hgsc.bcm.edu	37	chr7	5410916	5410916	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.108910891089109	22	0.00894912226699646	2.08683871540888	3.78950939457203	0.825601175288023	0.00304369518222121	0.062903033765905	11	aagccgtccgcgtcggcggcGgccgtgggctgcagcaggaa	18	13	0	0	rs10215902		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	TNRC18-46	NM_001080495	exon11	c.C3309G	p.A1103A	GGCGGCGGCCGTG	.	4	4	1	0	G|0.900;C|0.100	0	0	0	0	0	C	5410916	G	C	5410916	2	2	4	1	0	0	0	0	0	0	0	1	16376	1103	39	2		2	TNRC18	7	5410916	Silent	SNP	G	TCGA-OR-A5J4-01A-11D-A29I-10		5410916	153727747	75	314										
TNRC18	84629	hgsc.bcm.edu	37	chr7	5427517	5427517	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.108910891089109	22	0.00894912226699646	2.08683871540888	3.78950939457203	0.825601175288023	0.00304369518222121	0.062903033765905	11	cgcttcagctgccggccgccGcccgctgcagggcctccgga	14	19	1	0	rs34693947	byfrequency	TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	TNRC18-46	NM_001080495	exon5	c.C1938T	p.G646G	GCCGCCGCCCGCT	.	11	11	0	0	G|0.797;A|0.203	0	0	0	0	0	A	5427517	G	A	5427517	2	1	4	1	0	0	0	0	0	0	0	1	16376	1074	38	1		1	TNRC18	7	5427517	Silent	SNP	G	TCGA-OR-A5J4-01A-11D-A29I-10	16601	5427517	153711146	76	315										
GARS	2617	hgsc.bcm.edu	37	chr7	30634630	30634630	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.108910891089109	22	0.00894912226699646	2.08683871540888	3.78950939457203	0.825601175288023	0.00304369518222121	0.062903033765905	11	ttagcccgaccctcgctcctGctccgccggtccctcagcgc	9	21	1	0	rs2529438	byfrequency	TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	GARS-91	NM_002047	exon1	c.G93C	p.L31L	GCTCCTGCTCCGC	.	9	9	0	0	G|0.889;C|0.111	0	0	0	0	0	C	30634630	G	C	30634630	2	2	4	1	0	0	0	0	0	0	0	1	6262	1306	46	3		3	GARS	7	30634630	Silent	SNP	G	TCGA-OR-A5J4-01A-11D-A29I-10	25207113	30634630	128504033	77	316										
OGDH	4967	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	44714133	44714133	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.108910891089109	22	0.00894912226699646	2.08683871540888	3.78950939457203	0.825601175288023	0.00304369518222121	0.062903033765905	11	agtgagaatggcgtggactaCgtgatcatgggcatgccaca	14	8	1	2	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	OGDH-228	NM_002541	exon7	c.C912T	p.Y304Y	GGACTACGTGATC	.	172	63	279	0	.	0	0	0	0	0	T	44714133	C	T	44714133	2	4	4	1	0	0	0	0	0	0	0	1	10868	547	19	1		1	OGDH	7	44714133	Silent	SNP	C	TCGA-OR-A5J4-01A-11D-A29I-10	14079503	44714133	114424530	78	317										
ASB4	51666	broad.mit.edu;bcgsc.ca	37	chr7	95157438	95157438	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.108910891089109	22	0.00894912226699646	2.08683871540888	3.78950939457203	0.825601175288023	0.00304369518222121	0.062903033765905	11	tggaactgtgaccacgtgctCatgcacatgatgctggaagc	12	10	1	2	rs142833028	alternate_allele	TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	ASB4-226	NM_016116	exon3	c.C801G	p.L267L	CGTGCTCATGCAC	.	212	10	194	0	C|1.000;T|0.000	0	0	0	0	0	G	95157438	C	G	95157438	2	3	4	1	0	0	0	0	0	0	0	1	1026	813	29	3		3	ASB4	7	95157438	Silent	SNP	C	TCGA-OR-A5J4-01A-11D-A29I-10	50443305	95157438	63981225	79	318										
PARP12	64761	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	139737565	139737565	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.108910891089109	22	0.00894912226699646	2.08683871540888	3.78950939457203	0.825601175288023	0.00304369518222121	0.062903033765905	11	cggcctggaacttcaaggtgGctgcctggccgtcagacccc	13	15	2	1	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	PARP12-525	NM_022750	exon7	c.C1274T	p.A425V	AAGGTGGCTGCCT	.	68	49	186	0	.	0	0	0	0	0	A	139737565	G	A	139737565	3	1	4	1	0	0	0	0	1	0	0	0	11486	1203	42	3	855	3	PARP12	7	139737565	Missense_Mutation	SNP	G	TCGA-OR-A5J4-01A-11D-A29I-10	44580127	139737565	19401098	80	319										
NOS3	4846	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	150698393	150698393	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.108910891089109	22	0.00894912226699646	2.08683871540888	3.78950939457203	0.825601175288023	0.00304369518222121	0.062903033765905	11	cacctggagaatgagcagaaGgccagggggggctgccctgc	17	11	0	3	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	NOS3-1011	NM_001160111	exon10	c.G1308T	p.K436N	GCAGAAGGCCAGG	.	19	12	45	0	.	0	0	0	0	0	T	150698393	G	T	150698393	3	4	4	1	0	0	0	0	1	0	0	0	10573	991	35	3	1346	3	NOS3	7	150698393	Missense_Mutation	SNP	G	TCGA-OR-A5J4-01A-11D-A29I-10	10960828	150698393	8440270	81	320										
MLL3	58508	bcgsc.ca	37	chr7	151932990	151932990	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.108910891089109	22	0.00894912226699646	2.08683871540888	3.78950939457203	0.825601175288023	0.00304369518222121	0.062903033765905	11	gtcctgcacctcgaggtctcCgctttcctggaaatccagac	9	15	1	1	rs76844681		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	MLL3-1398	NM_170606	exon16	c.G2681A	p.R894Q	GGTCTCCGCTTTC	.	103	12	186	1	C|0.999;T|0.001	0	0	0	0	0	T	151932990	C	T	151932990	3	4	4	1	0	0	0	0	1	0	0	0	9650	652	23	1	12230	1	MLL3	7	151932990	Missense_Mutation	SNP	C	TCGA-OR-A5J4-01A-11D-A29I-10	1234597	151932990	7205673	82	321										
HTR5A	3361	broad.mit.edu	37	chr7	154862947	154862947	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.108910891089109	22	0.00894912226699646	2.08683871540888	3.78950939457203	0.825601175288023	0.00304369518222121	0.062903033765905	11	ctggcagctaggtcggaggcTgtgccagctttggatcgcgt	16	10	0	0	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	HTR5A-155	NM_024012	exon1	c.T338G	p.L113R	GGAGGCTGTGCCA	.	17	2	8	0	.	0	0	0	0	0	G	154862947	T	G	154862947	3	3	4	1	0	0	0	0	1	0	0	0	7471	1580	55	5	340	5	HTR5A	7	154862947	Missense_Mutation	SNP	T	TCGA-OR-A5J4-01A-11D-A29I-10	2929957	154862947	4275716	83	322										
SLC20A2	6575	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	42294695	42294695	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.108910891089109	22	0.00894912226699646	2.08683871540888	3.78950939457203	0.825601175288023	0.00304369518222121	0.062903033765905	11	acgccgccctcctccgcctcGatctccgcctctgccaccgc	7	24	2	0	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	SLC20A2-92	NM_001257181	exon8	c.C1335G	p.I445M	CGCCTCGATCTCC	.	104	17	37	0	.	0	0	0	0	0	C	42294695	G	C	42294695	3	2	4	1	0	0	0	0	1	0	0	0	14474	1048	37	2	639	2	SLC20A2	8	42294695	Missense_Mutation	SNP	G	TCGA-OR-A5J4-01A-11D-A29I-10		42294695	104069327	84	323										
CRH	1392	hgsc.bcm.edu	37	chr8	67089425	67089425	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.108910891089109	22	0.00894912226699646	2.08683871540888	3.78950939457203	0.825601175288023	0.00304369518222121	0.062903033765905	11	gaagggcggctgccgctgccTccggcgaggagcgaggaggc	20	12	0	0	rs6159	byfrequency;by2hit2allele;by1000genomes	TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	CRH-90	NM_000756	exon2	c.A288C	p.G96G	GCTGCCTCCGGCG	.	18	4	3	0	T|0.642;G|0.358	0	0	0	0	0	G	67089425	T	G	67089425	2	3	4	1	0	0	0	0	0	0	0	1	3875	1538	54	5		5	CRH	8	67089425	Silent	SNP	T	TCGA-OR-A5J4-01A-11D-A29I-10	24794730	67089425	79274597	85	324										
ZNF704	619279	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr8	81553604	81553604	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.108910891089109	22	0.00894912226699646	2.08683871540888	3.78950939457203	0.825601175288023	0.00304369518222121	0.062903033765905	11	ctctgcctgggggtctctcaGtcgaggaacctctggcaggc	14	13	4	0	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	ZNF704-90	NM_001033723	exon9	c.C1236T	p.D412D	CTCTCAGTCGAGG	.	118	27	43	0	.	0	0	0	0	0	A	81553604	G	A	81553604	2	1	4	1	0	0	0	0	0	0	0	1	18144	1020	36	3		3	ZNF704	8	81553604	Silent	SNP	G	TCGA-OR-A5J4-01A-11D-A29I-10	14464179	81553604	64810418	86	325										
CHMP4C	92421	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr8	82670423	82670423	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.108910891089109	22	0.00894912226699646	2.08683871540888	3.78950939457203	0.825601175288023	0.00304369518222121	0.062903033765905	11	attggaacaggaggaattaaAtaagaagatgacaaatatcc	9	4	0	3	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	CHMP4C-92	NM_152284	exon4	c.A530G	p.N177S	AATTAAATAAGAA	.	177	39	114	0	.	0	0	0	0	0	G	82670423	A	G	82670423	3	3	4	1	0	0	0	0	1	0	0	0	3364	101	4	4	544	4	CHMP4C	8	82670423	Missense_Mutation	SNP	A	TCGA-OR-A5J4-01A-11D-A29I-10	1116819	82670423	63693599	87	326										
MTSS1	9788	broad.mit.edu	37	chr8	125568471	125568471	+	Splice_Site	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.108910891089109	22	0.00894912226699646	2.08683871540888	3.78950939457203	0.825601175288023	0.00304369518222121	0.062903033765905	11	ctactgagaacaagagcatcAccctggtggcagccgataca	10	12	1	2	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	MTSS1-91	NM_014751	exon13	c.1404+2T>G	.	AGCATCACCCTGG	.	100	11	106	6	.	0	0	0	0	0	C	125568471	A	C	125568471	5	2	4	1	0	0	0	0	0	0	1	0	9990	173	6	5	873	5	MTSS1	8	125568471	Splice_Site	SNP	A	TCGA-OR-A5J4-01A-11D-A29I-10	42898048	125568471	20795551	88	327										
RHPN1	114822	broad.mit.edu	37	chr8	144459625	144459625	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.108910891089109	22	0.00894912226699646	2.08683871540888	3.78950939457203	0.825601175288023	0.00304369518222121	0.062903033765905	11	gactggtctacaccgctgaaGgtaggtactggcctccaagc	12	12	1	1	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	RHPN1-67	NM_052924	exon4	c.G381T	p.K127N	GCTGAAGGTAGGT	.	95	4	103	0	.	0	0	0	0	0	T	144459625	G	T	144459625	3	4	4	1	0	0	0	0	1	0	0	0	13385	1014	35	3	395	3	RHPN1	8	144459625	Missense_Mutation	SNP	G	TCGA-OR-A5J4-01A-11D-A29I-10	18891154	144459625	1904397	89	328										
PLEC	5339	hgsc.bcm.edu	37	chr8	144990528	144990528	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.108910891089109	22	0.00894912226699646	2.08683871540888	3.78950939457203	0.825601175288023	0.00304369518222121	0.062903033765905	11	cgcgagccggtgcgggagccAgcggtagagccggagccgct	19	13	0	1	rs7014582	byfrequency	TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	PLEC-141	NM_201380	exon32	c.T13872C	p.A4624A	GGAGCCAGCGGTA	.	10	5	1	0	A|0.536;G|0.464	0	0	0	0	0	G	144990528	A	G	144990528	2	3	4	1	0	0	0	0	0	0	0	1	12081	175	7	4		4	PLEC	8	144990528	Silent	SNP	A	TCGA-OR-A5J4-01A-11D-A29I-10	530903	144990528	1373494	90	329										
MPDZ	8777	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr9	13192144	13192144	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.108910891089109	22	0.00894912226699646	2.08683871540888	3.78950939457203	0.825601175288023	0.00304369518222121	0.062903033765905	11	tgataccttttctgttagctCaatatcacataagtccaggc	6	10	3	1	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	MPDZ-231	NM_003829	exon15	c.G1954T	p.E652X	TTAGCTCAATATC	.	110	21	72	0	.	0	0	0	0	0	A	13192144	C	A	13192144	4	1	4	1	0	0	0	0	0	1	0	0	9750	835	29	3	4299	3	MPDZ	9	13192144	Nonsense_Mutation	SNP	C	TCGA-OR-A5J4-01A-11D-A29I-10		13192144	128021287	91	330										
SH3GL2	6456	broad.mit.edu;bcgsc.ca	37	chr9	17795615	17795615	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.108910891089109	22	0.00894912226699646	2.08683871540888	3.78950939457203	0.825601175288023	0.00304369518222121	0.062903033765905	11	aatgaaggggagttgggattTaaagagggcgatatcatcac	14	4	2	2	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	SH3GL2-91	NM_003026	exon9	c.T933C	p.F311F	GGGATTTAAAGAG	.	309	12	227	0	.	0	0	0	0	0	C	17795615	T	C	17795615	2	2	4	1	0	0	0	0	0	0	0	1	14286	1751	61	4		4	SH3GL2	9	17795615	Silent	SNP	T	TCGA-OR-A5J4-01A-11D-A29I-10	4603471	17795615	123417816	92	331										
IFNA8	3445	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr9	21409580	21409580	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.108910891089109	22	0.00894912226699646	2.08683871540888	3.78950939457203	0.825601175288023	0.00304369518222121	0.062903033765905	11	gtgatagagtctcccctgatGtacgaggactccatcctggc	11	12	1	3	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	IFNA8-90	NM_002170	exon1	c.G405A	p.M135I	CCTGATGTACGAG	.	215	47	110	0	.	0	0	0	0	0	A	21409580	G	A	21409580	3	1	4	1	0	0	0	0	1	0	0	0	7564	1377	48	3	407	3	IFNA8	9	21409580	Missense_Mutation	SNP	G	TCGA-OR-A5J4-01A-11D-A29I-10	3613965	21409580	119803851	93	332										
PRSS3	5646	broad.mit.edu	37	chr9	33794840	33794840	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.108910891089109	22	0.00894912226699646	2.08683871540888	3.78950939457203	0.825601175288023	0.00304369518222121	0.062903033765905	11	ttgaagaaggggaggagtgcGccattggttttccatcctcc	13	9	0	2	rs10117993	byfrequency	TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	PRSS3-90	NM_001197097	exon2	c.G51A	p.A17A	GAGTGCGCCATTG	.	184	7	138	2	G|0.995;A|0.005	0	0	0	0	0	A	33794840	G	A	33794840	2	1	4	1	0	0	0	0	0	0	0	1	12654	1102	38	1		1	PRSS3	9	33794840	Silent	SNP	G	TCGA-OR-A5J4-01A-11D-A29I-10	12385260	33794840	107418591	94	333										
PIGO	84720	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr9	35092629	35092629	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.108910891089109	22	0.00894912226699646	2.08683871540888	3.78950939457203	0.825601175288023	0.00304369518222121	0.062903033765905	11	aatcacagtcggcagtgtcgCctcagcccccttggggctct	11	15	3	0	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	PIGO-290	NM_001201484	exon8	c.G1255A	p.A419T	GTGTCGCCTCAGC	.	81	21	88	0	.	0	0	0	0	0	T	35092629	C	T	35092629	3	4	4	1	0	0	0	0	1	0	0	0	11923	739	26	3	2034	3	PIGO	9	35092629	Missense_Mutation	SNP	C	TCGA-OR-A5J4-01A-11D-A29I-10	1297789	35092629	106120802	95	334										
PCSK5	5125	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr9	78910311	78910311	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.108910891089109	22	0.00894912226699646	2.08683871540888	3.78950939457203	0.825601175288023	0.00304369518222121	0.062903033765905	11	gggtgttactggtgtgaagaGggcttctttctcttaggtaa	14	5	2	2	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	PCSK5-93	NM_001190482	exon26	c.G3306A	p.E1102E	TGAAGAGGGCTTC	.	266	82	267	0	.	0	0	0	0	0	A	78910311	G	A	78910311	2	1	4	1	0	0	0	0	0	0	0	1	11632	1015	35	3		3	PCSK5	9	78910311	Silent	SNP	G	TCGA-OR-A5J4-01A-11D-A29I-10	43817682	78910311	62303120	96	335										
SHC3	53358	hgsc.bcm.edu	37	chr9	91793225	91793225	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.108910891089109	22	0.00894912226699646	2.08683871540888	3.78950939457203	0.825601175288023	0.00304369518222121	0.062903033765905	11	gggcgccttgcgcagcgcctCgccggacaccaagtagggag	16	14	0	0	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	SHC3-415	NM_016848	exon1	c.G151A	p.E51K	GCGCCTCGCCGGA	.	19	14	2	0	.	0	0	0	0	0	T	91793225	C	T	91793225	3	4	4	1	0	0	0	0	1	0	0	0	14307	893	31	1	1681	1	SHC3	9	91793225	Missense_Mutation	SNP	C	TCGA-OR-A5J4-01A-11D-A29I-10	12882914	91793225	49420206	97	336										
OR1K1	392392	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr9	125562456	125562458	+	In_Frame_Del	DEL	ACA	ACA	-													0.108910891089109	22	0.00894912226699646	2.08683871540888	3.78950939457203	0.825601175288023	0.00304369518222121	0.062903033765905	11	cattcgttttattgggactgAcaacaagtcctggacagcag					novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	ACA	ACA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	OR1K1-69	NM_080859	exon1	c.55_57del	p.19_19del	GGACTGACAACAA	.	196	42	125	0	.	0	0	0	0	0	-	125562458	ACA	-	125562456	7	5	4	1	0	1	0	1	0	0	0	0	10991	275	10	0	57	0	OR1K1	9	125562456	In_Frame_Del	DEL	ACA	TCGA-OR-A5J4-01A-11D-A29I-10	33769231	125562456	15650975	98	337										
PRDM12	59335	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr9	133556750	133556750	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.108910891089109	22	0.00894912226699646	2.08683871540888	3.78950939457203	0.825601175288023	0.00304369518222121	0.062903033765905	11	tcgcacatgcgcatccacacGctggacaagcccttcgtgtg	10	15	0	0	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	PRDM12-90	NM_021619	exon5	c.G798A	p.T266T	CCACACGCTGGAC	.	122	27	27	0	.	0	0	0	0	0	A	133556750	G	A	133556750	2	1	4	1	0	0	0	0	0	0	0	1	12485	1074	38	1		1	PRDM12	9	133556750	Silent	SNP	G	TCGA-OR-A5J4-01A-11D-A29I-10	7994294	133556750	7656681	99	338										
SLC2A6	11182	broad.mit.edu;bcgsc.ca	37	chr9	136337148	136337148	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.108910891089109	22	0.00894912226699646	2.08683871540888	3.78950939457203	0.825601175288023	0.00304369518222121	0.062903033765905	11	ggcggggaccttgacctagcGcaagaaggaccttctccccg	13	14	1	2	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	SLC2A6-90	NM_017585	exon10	c.C1519T	p.R507C	CCTAGCGCAAGAA	.	135	6	65	0	.	0	0	0	0	0	A	136337148	G	A	136337148	3	1	4	1	0	0	0	0	1	0	0	0	14584	1087	38	1	8	1	SLC2A6	9	136337148	Missense_Mutation	SNP	G	TCGA-OR-A5J4-01A-11D-A29I-10	2780398	136337148	4876283	100	339										
PAEP	5047	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr9	138453660	138453660	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.108910891089109	22	0.00894912226699646	2.08683871540888	3.78950939457203	0.825601175288023	0.00304369518222121	0.062903033765905	11	ccgcagccatgctgtgcctcCtgctcaccctgggcgtggcc	12	18	1	0	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	PAEP-68	NM_002571	exon1	c.C13T	p.L5L	TGCCTCCTGCTCA	.	205	45	115	0	.	0	0	0	0	0	T	138453660	C	T	138453660	2	4	4	1	0	0	0	0	0	0	0	1	11411	680	24	3		3	PAEP	9	138453660	Silent	SNP	C	TCGA-OR-A5J4-01A-11D-A29I-10	2116512	138453660	2759771	101	340										
RET	5979	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr10	43606665	43606665	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.108910891089109	22	0.00894912226699646	2.08683871540888	3.78950939457203	0.825601175288023	0.00304369518222121	0.062903033765905	11	gcccccctagatcgggaaagTctgtgtggaaaactgccagg	13	11	1	1	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	RET-4507	NM_020630	exon7	c.T1274C	p.V425A	GGAAAGTCTGTGT	.	100	28	79	0	.	0	0	0	0	0	C	43606665	T	C	43606665	3	2	4	1	0	0	0	0	1	0	0	0	13270	1667	58	4	1300	4	RET	10	43606665	Missense_Mutation	SNP	T	TCGA-OR-A5J4-01A-11D-A29I-10		43606665	91928082	102	341										
NPFFR1	64106	hgsc.bcm.edu	37	chr10	72014863	72014863	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.108910891089109	22	0.00894912226699646	2.08683871540888	3.78950939457203	0.825601175288023	0.00304369518222121	0.062903033765905	11	cccgactcagagggcagcccGgagtcgctgggccgcaccac	14	17	1	1	rs60225321	byfrequency	TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	NPFFR1-22	NM_022146	exon4	c.C1143T	p.S381S	CAGCCCGGAGTCG	.	11	11	1	0	G|0.929;A|0.071	0	0	0	0	0	A	72014863	G	A	72014863	2	1	4	1	0	0	0	0	0	0	0	1	10606	1103	39	1		1	NPFFR1	10	72014863	Silent	SNP	G	TCGA-OR-A5J4-01A-11D-A29I-10	28408198	72014863	63519884	103	342										
ZNF503	84858	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr10	77160944	77160944	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.108910891089109	22	0.00894912226699646	2.08683871540888	3.78950939457203	0.825601175288023	0.00304369518222121	0.062903033765905	11	ccagttcgtgccgtcagcatCttcagcaccttgattggcag	10	13	3	1	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	ZNF503-91	NM_032772	exon1	c.G234T	p.K78N	CAGCATCTTCAGC	.	42	12	53	0	.	0	0	0	0	0	A	77160944	C	A	77160944	3	1	4	1	0	0	0	0	1	0	0	0	17988	912	32	3	1714	3	ZNF503	10	77160944	Missense_Mutation	SNP	C	TCGA-OR-A5J4-01A-11D-A29I-10	5146081	77160944	58373803	104	343										
PNLIPRP1	5407	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr10	118354303	118354303	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.108910891089109	22	0.00894912226699646	2.08683871540888	3.78950939457203	0.825601175288023	0.00304369518222121	0.062903033765905	11	ctggaagaagggctcccaagCcacctacacacaggctgcca	10	15	0	1	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	PNLIPRP1-154	NM_006229	exon5	c.C392A	p.A131D	CCCAAGCCACCTA	.	123	45	111	0	.	0	0	0	0	0	A	118354303	C	A	118354303	3	1	4	1	0	0	0	0	1	0	0	0	12179	739	26	3	406	3	PNLIPRP1	10	118354303	Missense_Mutation	SNP	C	TCGA-OR-A5J4-01A-11D-A29I-10	41193359	118354303	17180444	105	344										
FANK1	92565	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr10	127693588	127693588	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.108910891089109	22	0.00894912226699646	2.08683871540888	3.78950939457203	0.825601175288023	0.00304369518222121	0.062903033765905	11	gatggaggccactgcagtgtGattgagtggatgataaagga	16	4	0	3	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	FANK1-91	NM_145235	exon7	c.G675A	p.V225V	CAGTGTGATTGAG	.	159	49	167	1	.	0	0	0	0	0	A	127693588	G	A	127693588	2	1	4	1	0	0	0	0	0	0	0	1	5691	1277	45	3		3	FANK1	10	127693588	Silent	SNP	G	TCGA-OR-A5J4-01A-11D-A29I-10	9339285	127693588	7841159	106	345										
TH	7054	bcgsc.ca	37	chr11	2188688	2188688	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.108910891089109	22	0.00894912226699646	2.08683871540888	3.78950939457203	0.825601175288023	0.00304369518222121	0.062903033765905	11	gtggcaatctcctcggcggtGtactccacacggggaatcgg	14	12	1	0	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	TH-90	NM_199292	exon7	c.C765A	p.Y255X	GGCGGTGTACTCC	.	69	4	72	0	.	0	0	0	0	0	T	2188688	G	T	2188688	4	4	4	1	0	0	0	0	0	1	0	0	15875	1372	48	3	853	3	TH	11	2188688	Nonsense_Mutation	SNP	G	TCGA-OR-A5J4-01A-11D-A29I-10		2188688	132817828	107	346										
OR52N1	79473	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	5809714	5809714	+	Silent	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.108910891089109	22	0.00894912226699646	2.08683871540888	3.78950939457203	0.825601175288023	0.00304369518222121	0.062903033765905	11	atgagcaccccagactccatCcctgtgaaggtgtgcacaaa	9	13	0	3	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	OR52N1-69	NM_001001913	exon1	c.G333C	p.G111G	CTCCATCCCTGTG	.	79	57	197	0	.	0	0	0	0	0	G	5809714	C	G	5809714	2	3	4	1	0	0	0	0	0	0	0	1	11156	842	30	3		3	OR52N1	11	5809714	Silent	SNP	C	TCGA-OR-A5J4-01A-11D-A29I-10	3621026	5809714	129196802	108	347										
EML3	256364	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	62376216	62376216	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.108910891089109	22	0.00894912226699646	2.08683871540888	3.78950939457203	0.825601175288023	0.00304369518222121	0.062903033765905	11	ctttggccttacctttccatCcttatccactccagctgtct	4	16	1	0	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	EML3-91	NM_153265	exon8	c.G991A	p.D331N	TTCCATCCTTATC	.	359	69	233	0	.	0	0	0	0	0	T	62376216	C	T	62376216	3	4	4	1	0	0	0	0	1	0	0	0	5111	855	30	3	1759	3	EML3	11	62376216	Missense_Mutation	SNP	C	TCGA-OR-A5J4-01A-11D-A29I-10	56566502	62376216	72630300	109	348										
CCDC88B	283234	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	64111938	64111938	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.108910891089109	22	0.00894912226699646	2.08683871540888	3.78950939457203	0.825601175288023	0.00304369518222121	0.062903033765905	11	gcctgaggcctgggggttgaGacaggagggccctgagcaca	18	10	0	3	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	CCDC88B-94	NM_032251	exon14	c.G1925C	p.R642T	GGTTGAGACAGGA	.	157	50	76	0	.	0	0	0	0	0	C	64111938	G	C	64111938	3	2	4	1	0	0	0	0	1	0	0	0	2870	942	33	3	1979	3	CCDC88B	11	64111938	Missense_Mutation	SNP	G	TCGA-OR-A5J4-01A-11D-A29I-10	1735722	64111938	70894578	110	349										
DPP3	10072	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	66272099	66272099	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.108910891089109	22	0.00894912226699646	2.08683871540888	3.78950939457203	0.825601175288023	0.00304369518222121	0.062903033765905	11	acaggtgctgaagtccacagGggatgtggccggagggcggg	20	8	0	1	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	DPP3-46	NM_130443	exon17	c.G1895A	p.G632E	CCACAGGGGATGT	.	52	21	51	0	.	0	0	0	0	0	A	66272099	G	A	66272099	3	1	4	1	0	0	0	0	1	0	0	0	4739	1232	43	3	1957	3	DPP3	11	66272099	Missense_Mutation	SNP	G	TCGA-OR-A5J4-01A-11D-A29I-10	2160161	66272099	68734417	111	350										
RBM14	10432	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	66384417	66384417	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.108910891089109	22	0.00894912226699646	2.08683871540888	3.78950939457203	0.825601175288023	0.00304369518222121	0.062903033765905	11	agatgtcgcgcccaaggcctCttaatacttggaagattttc	9	10	1	2	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	RBM14-92	NM_001198837	exon1	c.C226G	p.L76V	AGGCCTCTTAATA	.	122	11	66	0	.	0	0	0	0	0	G	66384417	C	G	66384417	3	3	4	1	0	0	0	0	1	0	0	0	13150	913	32	3	228	3	RBM14	11	66384417	Missense_Mutation	SNP	C	TCGA-OR-A5J4-01A-11D-A29I-10	112318	66384417	68622099	112	351										
CORO1B	57175	hgsc.bcm.edu	37	chr11	67206163	67206163	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.108910891089109	22	0.00894912226699646	2.08683871540888	3.78950939457203	0.825601175288023	0.00304369518222121	0.062903033765905	11	ccggctctggccaggctgccGctgggggtggcatcagcagc	17	14	2	0	rs148492786	by1000genomes	TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	CORO1B-108	NM_020441	exon10	c.C1323T	p.S441S	GCTGCCGCTGGGG	.	12	8	0	0	G|0.997;A|0.003	0	0	0	0	0	A	67206163	G	A	67206163	2	1	4	1	0	0	0	0	0	0	0	1	3760	1078	38	1		1	CORO1B	11	67206163	Silent	SNP	G	TCGA-OR-A5J4-01A-11D-A29I-10	821746	67206163	67800353	113	352										
OR2AT4	341152	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	74800245	74800245	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.108910891089109	22	0.00894912226699646	2.08683871540888	3.78950939457203	0.825601175288023	0.00304369518222121	0.062903033765905	11	gtaggcaatgctgttatatgCcatctgggaggtccttacta	11	8	1	0	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	OR2AT4-69	NM_001005285	exon1	c.G514C	p.A172P	TATATGCCATCTG	.	103	43	144	0	.	0	0	0	0	0	G	74800245	C	G	74800245	3	3	4	1	0	0	0	0	1	0	0	0	11016	739	26	3	451	3	OR2AT4	11	74800245	Missense_Mutation	SNP	C	TCGA-OR-A5J4-01A-11D-A29I-10	7594082	74800245	60206271	114	353										
MLL	4297	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	118344503	118344503	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.108910891089109	22	0.00894912226699646	2.08683871540888	3.78950939457203	0.825601175288023	0.00304369518222121	0.062903033765905	11	aggacaagagtagagagagaGaccgggagagagaaaaggag	18	3	0	6	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	MLL-1255	NM_001197104	exon3	c.G2629C	p.D877H	GAGAGAGACCGGG	.	49	18	49	0	.	0	0	0	0	0	C	118344503	G	C	118344503	3	2	4	1	0	0	0	0	1	0	0	0	9648	942	33	3	2639	3	MLL	11	118344503	Missense_Mutation	SNP	G	TCGA-OR-A5J4-01A-11D-A29I-10	43544258	118344503	16662013	115	354										
HMBS	3145	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr11	118963200	118963200	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.108910891089109	22	0.00894912226699646	2.08683871540888	3.78950939457203	0.825601175288023	0.00304369518222121	0.062903033765905	11	gatcccgagactctgcttcgCtgcatcgctgaaagggcctt	11	13	1	2	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	HMBS-90	NM_000190	exon11	c.C738T	p.R246R	GCTTCGCTGCATC	.	75	6	85	0	.	0	0	0	0	0	T	118963200	C	T	118963200	2	4	4	1	0	0	0	0	0	0	0	1	7240	784	28	3		3	HMBS	11	118963200	Silent	SNP	C	TCGA-OR-A5J4-01A-11D-A29I-10	618697	118963200	16043316	116	355										
FLI1	2313	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	128677078	128677078	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.108910891089109	22	0.00894912226699646	2.08683871540888	3.78950939457203	0.825601175288023	0.00304369518222121	0.062903033765905	11	tttccctcttgccacaggtcCtccccttggaggggcacaaa	9	15	1	0	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	FLI1-1084	NM_002017	exon7	c.C725A	p.P242H	CAGGTCCTCCCCT	.	76	30	88	0	.	0	0	0	0	0	A	128677078	C	A	128677078	3	1	4	1	0	0	0	0	1	0	0	0	5943	681	24	3	751	3	FLI1	11	128677078	Missense_Mutation	SNP	C	TCGA-OR-A5J4-01A-11D-A29I-10	9713878	128677078	6329438	117	356										
IGSF9B	22997	hgsc.bcm.edu	37	chr11	133790390	133790390	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.108910891089109	22	0.00894912226699646	2.08683871540888	3.78950939457203	0.825601175288023	0.00304369518222121	0.062903033765905	11	aggtggggggcagtcctcggGggaggccggccttgggctgc	22	10	0	0	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	IGSF9B-68	NM_014987	exon18	c.C3230A	p.P1077H	CCTCGGGGGAGGC	.	27	14	7	0	.	0	0	0	0	0	T	133790390	G	T	133790390	3	4	4	1	0	0	0	0	1	0	0	0	7627	1232	43	3	827	3	IGSF9B	11	133790390	Missense_Mutation	SNP	G	TCGA-OR-A5J4-01A-11D-A29I-10	5113312	133790390	1216126	118	357										
CACNA1C	775	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	2614015	2614015	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.108910891089109	22	0.00894912226699646	2.08683871540888	3.78950939457203	0.825601175288023	0.00304369518222121	0.062903033765905	11	tccgttcttccaggtcaatgAtgccgtaggaagggactggc	13	10	2	1	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	CACNA1C-34	NM_001129831	exon8	c.A1121G	p.D374G	TCAATGATGCCGT	.	245	47	180	0	.	0	0	0	0	0	G	2614015	A	G	2614015	3	3	4	1	0	0	0	0	1	0	0	0	2546	333	12	4	1259	4	CACNA1C	12	2614015	Missense_Mutation	SNP	A	TCGA-OR-A5J4-01A-11D-A29I-10		2614015	131237880	119	358										
CLEC4C	170482	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	7882323	7882323	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.108910891089109	22	0.00894912226699646	2.08683871540888	3.78950939457203	0.825601175288023	0.00304369518222121	0.062903033765905	11	atcaaggttattgggttcacCtgagtgccagaatctgaaag	11	7	3	3	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	CLEC4C-93	NM_130441	exon7	c.G511T	p.G171C	GTTCACCTGAGTG	.	127	25	92	0	.	0	0	0	0	0	A	7882323	C	A	7882323	3	1	4	1	0	0	0	0	1	0	0	0	3519	681	24	3	134	3	CLEC4C	12	7882323	Missense_Mutation	SNP	C	TCGA-OR-A5J4-01A-11D-A29I-10	5268308	7882323	125969572	120	359										
A2ML1	144568	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	8995922	8995922	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.108910891089109	22	0.00894912226699646	2.08683871540888	3.78950939457203	0.825601175288023	0.00304369518222121	0.062903033765905	11	attacatcgacccggccgatGcaagccctgaccaagagatc	9	14	0	2	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	A2ML1-93	NM_144670	exon12	c.G1441A	p.A481T	GCCGATGCAAGCC	.	151	35	83	0	.	0	0	0	0	0	A	8995922	G	A	8995922	3	1	4	1	0	0	0	0	1	0	0	0	5	1319	46	3	1487	3	A2ML1	12	8995922	Missense_Mutation	SNP	G	TCGA-OR-A5J4-01A-11D-A29I-10	1113599	8995922	124855973	121	360										
BCAT1	586	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	25002802	25002802	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.108910891089109	22	0.00894912226699646	2.08683871540888	3.78950939457203	0.825601175288023	0.00304369518222121	0.062903033765905	11	cagggacactggattaaaggTtccacttgaaaaataaggtc	10	7	0	1	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	BCAT1-522	NM_001178093	exon6	c.A628C	p.T210P	TAAAGGTTCCACT	.	99	37	97	1	.	0	0	0	0	0	G	25002802	T	G	25002802	3	3	4	1	0	0	0	0	1	0	0	0	1355	1725	60	5	592	5	BCAT1	12	25002802	Missense_Mutation	SNP	T	TCGA-OR-A5J4-01A-11D-A29I-10	16006880	25002802	108849093	122	361										
ITPR2	3709	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	26809287	26809287	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.108910891089109	22	0.00894912226699646	2.08683871540888	3.78950939457203	0.825601175288023	0.00304369518222121	0.062903033765905	11	gcctggcatagcgaacaggcAccacggactcctggggatcc	13	14	0	0	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	ITPR2-542	NM_002223	exon19	c.T2387G	p.V796G	ACAGGCACCACGG	.	137	40	129	1	.	0	0	0	0	0	C	26809287	A	C	26809287	3	2	4	1	0	0	0	0	1	0	0	0	7942	159	6	5	5874	5	ITPR2	12	26809287	Missense_Mutation	SNP	A	TCGA-OR-A5J4-01A-11D-A29I-10	1806485	26809287	107042608	123	362										
ANO6	196527	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr12	45833607	45833607	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.108910891089109	22	0.00894912226699646	2.08683871540888	3.78950939457203	0.825601175288023	0.00304369518222121	0.062903033765905	11	tctgactttattgactccctCtattatatattttctatttc	2	9	3	2	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	ANO6-516	NM_001142679	exon20	c.C2676G	p.L892L	CTCCCTCTATTAT	.	56	5	29	0	.	0	0	0	0	0	G	45833607	C	G	45833607	2	3	4	1	0	0	0	0	0	0	0	1	701	900	32	3		3	ANO6	12	45833607	Silent	SNP	C	TCGA-OR-A5J4-01A-11D-A29I-10	19024320	45833607	88018288	124	363										
MLL2	8085	hgsc.bcm.edu;broad.mit.edu	37	chr12	49445206	49445206	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.108910891089109	22	0.00894912226699646	2.08683871540888	3.78950939457203	0.825601175288023	0.00304369518222121	0.062903033765905	11	gtgtggctcctcaggccgggGggacaggtgcggctcctcag	18	12	2	0	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	MLL2-612	NM_003482	exon10	c.C2260G	p.P754A	GCCGGGGGGACAG	.	46	12	10	0	.	0	0	0	0	0	C	49445206	G	C	49445206	3	2	4	1	0	0	0	0	1	0	0	0	9649	1232	43	3	14533	3	MLL2	12	49445206	Missense_Mutation	SNP	G	TCGA-OR-A5J4-01A-11D-A29I-10	3611599	49445206	84406689	125	364										
AQP2	359	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	50344855	50344855	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.108910891089109	22	0.00894912226699646	2.08683871540888	3.78950939457203	0.825601175288023	0.00304369518222121	0.062903033765905	11	ctgcctggtgggctgccacgTctccgttctccgagccgcct	12	17	2	0	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	AQP2-92	NM_000486	exon1	c.T242A	p.V81D	GCCACGTCTCCGT	.	131	37	40	0	.	0	0	0	0	0	A	50344855	T	A	50344855	3	1	4	1	0	0	0	0	1	0	0	0	826	1667	58	5	244	5	AQP2	12	50344855	Missense_Mutation	SNP	T	TCGA-OR-A5J4-01A-11D-A29I-10	899649	50344855	83507040	126	365										
OR6C1	390321	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	55714972	55714973	+	Missense_Mutation	DNP	GG	GG	TT													0.108910891089109	22	0.00894912226699646	2.08683871540888	3.78950939457203	0.825601175288023	0.00304369518222121	0.062903033765905	11	caaaattcttagaggtgatgGgattttcttgtgctgcgttt					novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	GG	GG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	OR6C1-69	NM_001005182	exon1	c.G590T	p.G197L	TGATGGGATTTTC	.	130	10	118	0	.	0	0	0	0	0	TT	55714973	GG	TT	55714972	3	4	4	1	0	0	0	0	1	0	0	0	11219	1233	43	3	591	3	OR6C1	12	55714972	Missense_Mutation	DNP	GG	TCGA-OR-A5J4-01A-11D-A29I-10	5370117	55714972	78136923	127	366										
CNPY2	10330	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr12	56705180	56705180	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.108910891089109	22	0.00894912226699646	2.08683871540888	3.78950939457203	0.825601175288023	0.00304369518222121	0.062903033765905	11	cagctctgtgaggtgggcctCtgagcgggcataaggcacct	15	11	2	2	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	CNPY2-68	NM_014255	exon4	c.G223C	p.E75Q	GGGCCTCTGAGCG	.	89	26	85	0	.	0	0	0	0	0	G	56705180	C	G	56705180	3	3	4	1	0	0	0	0	1	0	0	0	3634	922	32	3	337	3	CNPY2	12	56705180	Missense_Mutation	SNP	C	TCGA-OR-A5J4-01A-11D-A29I-10	990208	56705180	77146715	128	367										
NAB2	4665	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr12	57486328	57486329	+	Frame_Shift_Del	DEL	GA	GA	-													0.108910891089109	22	0.00894912226699646	2.08683871540888	3.78950939457203	0.825601175288023	0.00304369518222121	0.062903033765905	11	tttgtcccgccaagtagcccGagagagcacctacttgtcct					novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	GA	GA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	NAB2-92	NM_005967	exon3	c.1055_1056del	p.352_352del	TAGCCCGAGAGAG	.	189	52	168	0	.	0	0	0	0	0	-	57486329	GA	-	57486328	7	5	4	1	0	1	0	1	0	0	0	0	10160	1058	37	0	1065	0	NAB2	12	57486328	Frame_Shift_Del	DEL	GA	TCGA-OR-A5J4-01A-11D-A29I-10	781148	57486328	76365567	129	368										
LRP1	4035	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	57577207	57577207	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.108910891089109	22	0.00894912226699646	2.08683871540888	3.78950939457203	0.825601175288023	0.00304369518222121	0.062903033765905	11	tgtgcatgagggaatcagggGaattcccctggatcccaatg	13	9	1	1	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	LRP1-596	NM_002332	exon35	c.G5708T	p.G1903V	TCAGGGGAATTCC	.	139	26	135	0	.	0	0	0	0	0	T	57577207	G	T	57577207	3	4	4	1	0	0	0	0	1	0	0	0	8978	1174	41	3	5846	3	LRP1	12	57577207	Missense_Mutation	SNP	G	TCGA-OR-A5J4-01A-11D-A29I-10	90879	57577207	76274688	130	369										
SLC6A15	55117	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	85257275	85257275	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.108910891089109	22	0.00894912226699646	2.08683871540888	3.78950939457203	0.825601175288023	0.00304369518222121	0.062903033765905	11	aatcccatattcacaacactAgctattagcaatgataatag	4	9	1	1	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	SLC6A15-93	NM_182767	exon11	c.T1761A	p.A587A	AACACTAGCTATT	.	328	153	191	0	.	0	0	0	0	0	T	85257275	A	T	85257275	2	4	4	1	0	0	0	0	0	0	0	1	14713	407	15	5		5	SLC6A15	12	85257275	Silent	SNP	A	TCGA-OR-A5J4-01A-11D-A29I-10	27680068	85257275	48594620	131	370										
EEA1	8411	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	93202827	93202827	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.108910891089109	22	0.00894912226699646	2.08683871540888	3.78950939457203	0.825601175288023	0.00304369518222121	0.062903033765905	11	ttcaagttgtttactcaattCtgtggctctgagctctaaat	7	8	5	1	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	EEA1-229	NM_003566	exon18	c.G2305A	p.E769K	TCAATTCTGTGGC	.	62	17	65	1	.	0	0	0	0	0	T	93202827	C	T	93202827	3	4	4	1	0	0	0	0	1	0	0	0	4932	922	32	3	1978	3	EEA1	12	93202827	Missense_Mutation	SNP	C	TCGA-OR-A5J4-01A-11D-A29I-10	7945552	93202827	40649068	132	371										
AMDHD1	144193	hgsc.bcm.edu	37	chr12	96337225	96337225	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.108910891089109	22	0.00894912226699646	2.08683871540888	3.78950939457203	0.825601175288023	0.00304369518222121	0.062903033765905	11	agaacgcgcagcaagtggtgCtggtgtgcgcccgcggcgag	18	11	0	1	rs1436121	byfrequency	TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	AMDHD1-90	NM_152435	exon1	c.C49T	p.L17L	GTGGTGCTGGTGT	.	5	5	0	0	C|0.752;T|0.248	0	0	0	0	0	T	96337225	C	T	96337225	2	4	4	1	0	0	0	0	0	0	0	1	567	796	28	3		3	AMDHD1	12	96337225	Silent	SNP	C	TCGA-OR-A5J4-01A-11D-A29I-10	3134398	96337225	37514670	133	372										
GPR133	283383	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	131593280	131593280	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.108910891089109	22	0.00894912226699646	2.08683871540888	3.78950939457203	0.825601175288023	0.00304369518222121	0.062903033765905	11	aaatcctagaccccctgccaAgtgatggccgtgctcctaca	8	15	0	2	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	GPR133-191	NM_198827	exon18	c.A1899T	p.Q633H	CTGCCAAGTGATG	.	85	68	121	0	.	0	0	0	0	0	T	131593280	A	T	131593280	3	4	4	1	0	0	0	0	1	0	0	0	6663	69	3	5	1969	5	GPR133	12	131593280	Missense_Mutation	SNP	A	TCGA-OR-A5J4-01A-11D-A29I-10	35256055	131593280	2258615	134	373										
SUPT16H	11198	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr14	21840079	21840079	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.108910891089109	22	0.00894912226699646	2.08683871540888	3.78950939457203	0.825601175288023	0.00304369518222121	0.062903033765905	11	caggggctccattagcattcTcattgcccttagtgttggca	10	11	1	0	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	SUPT16H-90	NM_007192	exon3	c.A284G	p.E95G	GCATTCTCATTGC	.	110	39	122	0	.	0	0	0	0	0	C	21840079	T	C	21840079	3	2	4	1	0	0	0	0	1	0	0	0	15433	1551	54	4	2955	4	SUPT16H	14	21840079	Missense_Mutation	SNP	T	TCGA-OR-A5J4-01A-11D-A29I-10		21840079	85509461	135	374										
LRRC16B	90668	broad.mit.edu;bcgsc.ca	37	chr14	24524508	24524508	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.108910891089109	22	0.00894912226699646	2.08683871540888	3.78950939457203	0.825601175288023	0.00304369518222121	0.062903033765905	11	aatcttttggatttcagccaCttggagagccggtaagcaga	11	8	2	2	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	LRRC16B-139	NM_138360	exon8	c.C594A	p.H198Q	CAGCCACTTGGAG	.	193	9	149	0	.	0	0	0	0	0	A	24524508	C	A	24524508	3	1	4	1	0	0	0	0	1	0	0	0	8999	564	20	3	624	3	LRRC16B	14	24524508	Missense_Mutation	SNP	C	TCGA-OR-A5J4-01A-11D-A29I-10	2684429	24524508	82825032	136	375										
CPNE6	9362	broad.mit.edu	37	chr14	24545620	24545620	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.108910891089109	22	0.00894912226699646	2.08683871540888	3.78950939457203	0.825601175288023	0.00304369518222121	0.062903033765905	11	gctcgaatcccccccaacttCgaggtaggctagatgcgagg	12	13	0	1	rs139035718		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	CPNE6-93	NM_006032	exon12	c.C1110T	p.F370F	CAACTTCGAGGTA	.	106	4	88	0	C|1.000;T|0.000	0	0	0	0	0	T	24545620	C	T	24545620	2	4	4	1	0	0	0	0	0	0	0	1	3822	883	31	1		1	CPNE6	14	24545620	Silent	SNP	C	TCGA-OR-A5J4-01A-11D-A29I-10	21112	24545620	82803920	137	376										
AKAP6	9472	broad.mit.edu	37	chr14	33004880	33004880	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.108910891089109	22	0.00894912226699646	2.08683871540888	3.78950939457203	0.825601175288023	0.00304369518222121	0.062903033765905	11	tggacatccacgcagtgcagCtcctctggcaccagcttcga	10	15	1	0	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	AKAP6-733	NM_004274	exon3	c.C445A	p.L149I	GTGCAGCTCCTCT	.	210	8	107	1	.	0	0	0	0	0	A	33004880	C	A	33004880	3	1	4	1	0	0	0	0	1	0	0	0	455	797	28	3	451	3	AKAP6	14	33004880	Missense_Mutation	SNP	C	TCGA-OR-A5J4-01A-11D-A29I-10	8459260	33004880	74344660	138	377										
MIPOL1	145282	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr14	37736243	37736243	+	Silent	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.108910891089109	22	0.00894912226699646	2.08683871540888	3.78950939457203	0.825601175288023	0.00304369518222121	0.062903033765905	11	tctgagaaaagtatgcatcgGaaatccactgaattagttaa	8	6	1	2	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	MIPOL1-91	NM_001195296	exon6	c.G120T	p.R40R	GCATCGGAAATCC	.	208	68	178	0	.	0	0	0	0	0	T	37736243	G	T	37736243	2	4	4	1	0	0	0	0	0	0	0	1	9621	1161	41	3		3	MIPOL1	14	37736243	Silent	SNP	G	TCGA-OR-A5J4-01A-11D-A29I-10	4731363	37736243	69613297	139	378										
FRMD6	122786	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	52187025	52187025	+	Nonsense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.108910891089109	22	0.00894912226699646	2.08683871540888	3.78950939457203	0.825601175288023	0.00304369518222121	0.062903033765905	11	caagctgaaaacctgcagctCaatgaccagtcatggcagct	9	12	2	2	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	FRMD6-524	NM_001267046	exon11	c.C1277G	p.S426X	GCAGCTCAATGAC	.	128	37	146	2	.	0	0	0	0	0	G	52187025	C	G	52187025	4	3	4	1	0	0	0	0	0	1	0	0	6073	838	29	3	1291	3	FRMD6	14	52187025	Nonsense_Mutation	SNP	C	TCGA-OR-A5J4-01A-11D-A29I-10	14450782	52187025	55162515	140	379										
TRMT5	57570	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr14	61446459	61446459	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.108910891089109	22	0.00894912226699646	2.08683871540888	3.78950939457203	0.825601175288023	0.00304369518222121	0.062903033765905	11	ggttgagaatctttttctttGacccaataagaaaataccag	7	7	2	3	rs188092813		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	TRMT5-91	NM_020810	exon2	c.C157G	p.Q53E	TTCTTTGACCCAA	.	116	7	74	0	G|0.999;C|0.000	0	0	0	0	0	C	61446459	G	C	61446459	3	2	4	1	0	0	0	0	1	0	0	0	16605	1299	45	3	1388	3	TRMT5	14	61446459	Missense_Mutation	SNP	G	TCGA-OR-A5J4-01A-11D-A29I-10	9259434	61446459	45903081	141	380										
YLPM1	56252	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr14	75265522	75265522	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.108910891089109	22	0.00894912226699646	2.08683871540888	3.78950939457203	0.825601175288023	0.00304369518222121	0.062903033765905	11	ccattcagaccagaaccaggAgatggtggggaaaaaatgta	12	7	1	3	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	YLPM1-71	NM_019589	exon5	c.A3522G	p.G1174G	ACCAGGAGATGGT	.	115	31	97	0	.	0	0	0	0	0	G	75265522	A	G	75265522	2	3	4	1	0	0	0	0	0	0	0	1	17524	291	11	4		4	YLPM1	14	75265522	Silent	SNP	A	TCGA-OR-A5J4-01A-11D-A29I-10	13819063	75265522	32084018	142	381										
ISM2	145501	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr14	77951057	77951057	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.108910891089109	22	0.00894912226699646	2.08683871540888	3.78950939457203	0.825601175288023	0.00304369518222121	0.062903033765905	11	gggtactcaaggttgtgttgGccaatcccggcagcttctgc	13	11	2	0	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	ISM2-91	NM_199296	exon2	c.C347T	p.A116V	GTGTTGGCCAATC	.	196	50	177	0	.	0	0	0	0	0	A	77951057	G	A	77951057	3	1	4	1	0	0	0	0	1	0	0	0	7882	1203	42	3	1392	3	ISM2	14	77951057	Missense_Mutation	SNP	G	TCGA-OR-A5J4-01A-11D-A29I-10	2685535	77951057	29398483	143	382										
SNW1	22938	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr14	78203387	78203387	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.108910891089109	22	0.00894912226699646	2.08683871540888	3.78950939457203	0.825601175288023	0.00304369518222121	0.062903033765905	11	cctctgtttagctccagagtTgaatgccactccttgctgag	9	12	1	3	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	SNW1-187	NM_012245	exon6	c.A565T	p.N189Y	CAGAGTTGAATGC	.	55	38	46	0	.	0	0	0	0	0	A	78203387	T	A	78203387	3	1	4	1	0	0	0	0	1	0	0	0	14914	1812	63	5	1081	5	SNW1	14	78203387	Missense_Mutation	SNP	T	TCGA-OR-A5J4-01A-11D-A29I-10	252330	78203387	29146153	144	383										
ZNF770	54989	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr15	35275401	35275401	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.108910891089109	22	0.00894912226699646	2.08683871540888	3.78950939457203	0.825601175288023	0.00304369518222121	0.062903033765905	11	aatactacatttaaaaggcaGactatgagttagttgatgcc	8	6	0	3	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	ZNF770-91	NM_014106	exon3	c.C235T	p.L79L	AAGGCAGACTATG	.	37	19	48	1	.	0	0	0	0	0	A	35275401	G	A	35275401	2	1	4	1	0	0	0	0	0	0	0	1	18180	933	33	3		3	ZNF770	15	35275401	Silent	SNP	G	TCGA-OR-A5J4-01A-11D-A29I-10		35275401	67255991	145	384										
DISP2	85455	hgsc.bcm.edu	37	chr15	40660192	40660192	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.108910891089109	22	0.00894912226699646	2.08683871540888	3.78950939457203	0.825601175288023	0.00304369518222121	0.062903033765905	11	tcttcatgggcacggctgtgCtggtgcacctggcgctcacg	14	13	3	0	rs8040755	byfrequency	TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	DISP2-92	NM_033510	exon8	c.C1879T	p.L627L	GCTGTGCTGGTGC	.	8	8	1	0	C|0.941;T|0.059	0	0	0	0	0	T	40660192	C	T	40660192	2	4	4	1	0	0	0	0	0	0	0	1	4551	796	28	3		3	DISP2	15	40660192	Silent	SNP	C	TCGA-OR-A5J4-01A-11D-A29I-10	5384791	40660192	61871200	146	385										
AKAP13	11214	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr15	86286897	86286897	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.108910891089109	22	0.00894912226699646	2.08683871540888	3.78950939457203	0.825601175288023	0.00304369518222121	0.062903033765905	11	acaaagataaggggccttttCacatactgagttcaaccagc	8	10	2	2	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	AKAP13-258	NM_006738	exon36	c.C8245A	p.H2749N	CCTTTTCACATAC	.	103	40	99	0	.	0	0	0	0	0	A	86286897	C	A	86286897	3	1	4	1	0	0	0	0	1	0	0	0	449	826	29	3	8441	3	AKAP13	15	86286897	Missense_Mutation	SNP	C	TCGA-OR-A5J4-01A-11D-A29I-10	45626705	86286897	16244495	147	386										
MAN2A2	4122	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr15	91450636	91450636	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.108910891089109	22	0.00894912226699646	2.08683871540888	3.78950939457203	0.825601175288023	0.00304369518222121	0.062903033765905	11	gatcccaagatctgctgccaAtttgatttcaaacgcctgcc	7	13	2	2	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	MAN2A2-136	NM_006122	exon7	c.A1107G	p.Q369Q	CTGCCAATTTGAT	.	61	28	73	0	.	0	0	0	0	0	G	91450636	A	G	91450636	2	3	4	1	0	0	0	0	0	0	0	1	9243	98	4	4		4	MAN2A2	15	91450636	Silent	SNP	A	TCGA-OR-A5J4-01A-11D-A29I-10	5163739	91450636	11080756	148	387										
PKD1	5310	broad.mit.edu	37	chr16	2154573	2154573	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.108910891089109	22	0.00894912226699646	2.08683871540888	3.78950939457203	0.825601175288023	0.00304369518222121	0.062903033765905	11	tggtctctgcctgcaggatgAgcatcatggcctccagcttg	12	12	2	1	rs201238819		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	PKD1-91	NM_000296	exon22	c.T8087G	p.L2696R	AGGATGAGCATCA	.	142	4	105	0	.	0	0	0	0	0	C	2154573	A	C	2154573	3	2	4	1	0	0	0	0	1	0	0	0	11992	304	11	5	4924	5	PKD1	16	2154573	Missense_Mutation	SNP	A	TCGA-OR-A5J4-01A-11D-A29I-10		2154573	88200180	149	388										
MMP25	64386	hgsc.bcm.edu	37	chr16	3108863	3108863	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.108910891089109	22	0.00894912226699646	2.08683871540888	3.78950939457203	0.825601175288023	0.00304369518222121	0.062903033765905	11	tcaagggcgcccactactggCgcttccccaagaacagcatc	9	16	1	1	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	MMP25-226	NM_022468	exon10	c.C1453A	p.R485S	TACTGGCGCTTCC	.	69	4	86	0	.	0	0	0	0	0	A	3108863	C	A	3108863	3	1	4	1	0	0	0	0	1	0	0	0	9690	768	27	2	1491	2	MMP25	16	3108863	Missense_Mutation	SNP	C	TCGA-OR-A5J4-01A-11D-A29I-10	954290	3108863	87245890	150	389										
PPL	5493	bcgsc.ca	37	chr16	4935146	4935146	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.108910891089109	22	0.00894912226699646	2.08683871540888	3.78950939457203	0.825601175288023	0.00304369518222121	0.062903033765905	11	atctcccgcaccttctcctgCaccaccactttggcgttctc	5	19	3	0	rs1049206	byfrequency	TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	PPL-95	NM_002705	exon22	c.G3510A	p.V1170V	CTCCTGCACCACC	.	100	5	128	0	C|0.673;T|0.327	0	0	0	0	0	T	4935146	C	T	4935146	2	4	4	1	0	0	0	0	0	0	0	1	12366	697	25	3		3	PPL	16	4935146	Silent	SNP	C	TCGA-OR-A5J4-01A-11D-A29I-10	1826283	4935146	85419607	151	390										
TMC7	79905	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr16	19056276	19056276	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.108910891089109	22	0.00894912226699646	2.08683871540888	3.78950939457203	0.825601175288023	0.00304369518222121	0.062903033765905	11	gctccaagatcacatcctgtGatgatgacacatgtgacctt	8	11	1	5	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	TMC7-93	NM_024847	exon10	c.G1408C	p.D470H	TCCTGTGATGATG	.	67	27	126	0	.	0	0	0	0	0	C	19056276	G	C	19056276	3	2	4	1	0	0	0	0	1	0	0	0	16027	1290	45	3	1446	3	TMC7	16	19056276	Missense_Mutation	SNP	G	TCGA-OR-A5J4-01A-11D-A29I-10	14121130	19056276	71298477	152	391										
SCNN1B	6338	broad.mit.edu	37	chr16	23360165	23360165	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.108910891089109	22	0.00894912226699646	2.08683871540888	3.78950939457203	0.825601175288023	0.00304369518222121	0.062903033765905	11	gagctgggaggtcagcgtctCcctctccgtaggcttcaaga	13	12	4	1	rs35731153	byfrequency	TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	SCNN1B-157	NM_000336	exon2	c.C245G	p.S82C	GCGTCTCCCTCTC	.	125	3	174	1	C|0.995;G|0.005	0	0	0	0	0	G	23360165	C	G	23360165	3	3	4	1	0	0	0	0	1	0	0	0	13963	855	30	3	247	3	SCNN1B	16	23360165	Missense_Mutation	SNP	C	TCGA-OR-A5J4-01A-11D-A29I-10	4303889	23360165	66994588	153	392										
ALDOA	226	bcgsc.ca	37	chr16	30081476	30081476	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.108910891089109	22	0.00894912226699646	2.08683871540888	3.78950939457203	0.825601175288023	0.00304369518222121	0.062903033765905	11	caaggaaagtacactccgagCggtcaggctggggctgctgc	15	11	1	0	rs77290575	byfrequency	TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	ALDOA-226	NM_001243177	exon10	c.C1200T	p.S400S	TCCGAGCGGTCAG	.	110	5	127	0	C|0.994;T|0.006	0	0	0	0	0	T	30081476	C	T	30081476	2	4	4	1	0	0	0	0	0	0	0	1	507	767	27	1		1	ALDOA	16	30081476	Silent	SNP	C	TCGA-OR-A5J4-01A-11D-A29I-10	6721311	30081476	60273277	154	393										
CTRL	1506	ucsc.edu;bcgsc.ca	37	chr16	67965099	67965099	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.108910891089109	22	0.00894912226699646	2.08683871540888	3.78950939457203	0.825601175288023	0.00304369518222121	0.062903033765905	11	cggtttgatggcaggaatgcCgcagcctggccattgggcta	15	10	0	1	rs140026167	byfrequency	TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	CTRL-90	NM_001907	exon2	c.G58A	p.G20S	GAATGCCGCAGCC	.	147	37	95	0	C|0.994;T|0.006	0	0	0	0	0	T	67965099	C	T	67965099	3	4	4	1	0	0	0	0	1	0	0	0	4034	652	23	1	760	1	CTRL	16	67965099	Missense_Mutation	SNP	C	TCGA-OR-A5J4-01A-11D-A29I-10	37883623	67965099	22389654	155	394										
RPL13	6137	hgsc.bcm.edu	37	chr16	89627671	89627671	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.108910891089109	22	0.00894912226699646	2.08683871540888	3.78950939457203	0.825601175288023	0.00304369518222121	0.062903033765905	11	gccaaggcgcgccgcatcgcCccgcgccccgcgtcgggtcc	14	21	0	0	rs174035	bycluster;byfrequency;by1000genomes	TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	RPL13-90	NM_001243131	exon3	c.C141T	p.A47A	CATCGCCCCGCGC	.	5	5	0	0	C|0.846;T|0.154	0	0	0	0	0	T	89627671	C	T	89627671	2	4	4	1	0	0	0	0	0	0	0	1	13594	610	22	3		3	RPL13	16	89627671	Silent	SNP	C	TCGA-OR-A5J4-01A-11D-A29I-10	21662572	89627671	727082	156	395										
MC1R	4157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr16	89985902	89985902	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.108910891089109	22	0.00894912226699646	2.08683871540888	3.78950939457203	0.825601175288023	0.00304369518222121	0.062903033765905	11	catgtactgcttcatctgctGcctggccttgtcggacctgc	10	14	2	0	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	.	NM_002386	exon1	c.G236A	p.C79Y	TCTGCTGCCTGGC	.	123	57	113	0	.	0	0	0	0	0	A	89985902	G	A	89985902	3	1	4	1	0	0	0	0	1	0	0	0	9391	1319	46	3	238	3	MC1R	16	89985902	Missense_Mutation	SNP	G	TCGA-OR-A5J4-01A-11D-A29I-10	358231	89985902	368851	157	396										
FXR2	9513	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	7499311	7499311	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.108910891089109	22	0.00894912226699646	2.08683871540888	3.78950939457203	0.825601175288023	0.00304369518222121	0.062903033765905	11	ctgctgccaactgcttgcttGtctgaaaggaaaagtcactg	10	10	2	1	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	.	NM_004860	exon8	c.C662A	p.T221K	TTGCTTGTCTGAA	.	99	40	103	0	.	0	0	0	0	0	T	7499311	G	T	7499311	3	4	4	1	0	0	0	0	1	0	0	0	6135	1391	48	3	1299	3	FXR2	17	7499311	Missense_Mutation	SNP	G	TCGA-OR-A5J4-01A-11D-A29I-10		7499311	73695899	158	397										
SPHK1	8877	hgsc.bcm.edu;bcgsc.ca	37	chr17	74383432	74383434	+	In_Frame_Del	DEL	AGA	AGA	-													0.108910891089109	22	0.00894912226699646	2.08683871540888	3.78950939457203	0.825601175288023	0.00304369518222121	0.062903033765905	11	gcgcctcttcctggccatggAgaagggcaggcatatggagt					novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	AGA	AGA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	SPHK1-1107	NM_182965	exon6	c.1178_1180del	p.393_394del	CCATGGAGAAGGG	.	163	0	231	1	.	0	0	0	0	0	-	74383434	AGA	-	74383432	7	5	4	1	0	1	0	1	0	0	0	0	15083	304	11	0	1242	0	SPHK1	17	74383432	In_Frame_Del	DEL	AGA	TCGA-OR-A5J4-01A-11D-A29I-10	66884121	74383432	6811778	159	398										
OSBPL1A	114876	ucsc.edu	37	chr18	21883679	21883679	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.108910891089109	22	0.00894912226699646	2.08683871540888	3.78950939457203	0.825601175288023	0.00304369518222121	0.062903033765905	11	tcgctgttggcatgactgtgCtttctgcaaaaaaagaaaag	10	7	1	2	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	OSBPL1A-94	NM_080597	exon14	c.G1096T	p.A366S	ACTGTGCTTTCTG	.	39	4	59	0	.	0	0	0	0	0	A	21883679	C	A	21883679	3	1	4	1	0	0	0	0	1	0	0	0	11306	797	28	3	1816	3	OSBPL1A	18	21883679	Missense_Mutation	SNP	C	TCGA-OR-A5J4-01A-11D-A29I-10		21883679	56193569	160	399										
RAX	30062	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr18	56939705	56939706	+	Frame_Shift_Ins	INS	-	-	T													0.108910891089109	22	0.00894912226699646	2.08683871540888	3.78950939457203	0.825601175288023	0.00304369518222121	0.062903033765905	11	ctcatgcagctggtacgtggINStgaaagtcgtgcggttccgc					novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	RAX-90	NM_013435	exon2	c.431_432insA	p.T144fs	TACGTGGTGAAAG	.	151	55	152	0	.	0	0	0	0	0	T	56939706	-	T	56939705	7	5	4	1	0	1	1	0	0	0	0	0	13131	1261	44	0	617	0	RAX	18	56939705	Frame_Shift_Ins	INS	-	TCGA-OR-A5J4-01A-11D-A29I-10	35056026	56939705	21137543	161	400										
MADCAM1	8174	bcgsc.ca	37	chr19	501714	501714	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.108910891089109	22	0.00894912226699646	2.08683871540888	3.78950939457203	0.825601175288023	0.00304369518222121	0.062903033765905	11	gcctcccgacaccacctcccCggagtctcccgacaccacct	6	23	1	0	rs78071082	bycluster;byfrequency	TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	MADCAM1-90	NM_130760	exon4	c.C713A	p.P238Q	CCTCCCCGGAGTC	.	233	16	122	1	A|0.000;C|1.000;T|0.000	0	0	0	0	0	A	501714	C	A	501714	3	1	4	1	0	0	0	0	1	0	0	0	9179	652	23	2	727	2	MADCAM1	19	501714	Missense_Mutation	SNP	C	TCGA-OR-A5J4-01A-11D-A29I-10		501714	58627269	162	401										
MYO1F	4542	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	8604874	8604874	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.108910891089109	22	0.00894912226699646	2.08683871540888	3.78950939457203	0.825601175288023	0.00304369518222121	0.062903033765905	11	tggggcgccccttcttgtctCcatccagcttctcggggaag	12	14	3	0	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	MYO1F-93	NM_012335	exon16	c.G1649A	p.G550E	TTGTCTCCATCCA	.	69	12	52	0	.	0	0	0	0	0	T	8604874	C	T	8604874	3	4	4	1	0	0	0	0	1	0	0	0	10101	855	30	3	1699	3	MYO1F	19	8604874	Missense_Mutation	SNP	C	TCGA-OR-A5J4-01A-11D-A29I-10	8103160	8604874	50524109	163	402										
CACNA1A	773	hgsc.bcm.edu	37	chr19	13319693	13319693	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.108910891089109	22	0.00894912226699646	2.08683871540888	3.78950939457203	0.825601175288023	0.00304369518222121	0.062903033765905	11	tccttgtcggggggcgggggAtggtggtggtggtggtggtg	25	4	0	0	rs16051	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	CACNA1A-67	NM_001127221	exon46	c.T6660C	p.H2220H	CGGGGGATGGTGG	.	8	6	0	0	A|0.360;G|0.640	0	0	0	0	0	G	13319693	A	G	13319693	2	3	4	1	0	0	0	0	0	0	0	1	2544	330	12	4		4	CACNA1A	19	13319693	Silent	SNP	A	TCGA-OR-A5J4-01A-11D-A29I-10	4714819	13319693	45809290	164	403										
UQCRFS1	7386	hgsc.bcm.edu	37	chr19	29704002	29704002	+	Silent	SNP	T	T	C													0.108910891089109	22	0.00894912226699646	2.08683871540888	3.78950939457203	0.825601175288023	0.00304369518222121	0.062903033765905	11	aggacgggcgcgaacgggccTgagcgggatgctaccgacaa					rs11666764	byfrequency	TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	UQCRFS1-226	NM_006003	exon1	c.A24G	p.S8S	CGGGCCTGAGCGG	.	7	7	0	0	T|0.072;C|0.928	0	0	0	0	0	C	29704002	T	C	29704002	2	2	4	1	0	0	0	0	0	0	0	1	17059	1567	55	4		4	UQCRFS1	19	29704002	Silent	SNP	T	TCGA-OR-A5J4-01A-11D-A29I-10	16384309	29704002	29424981	165	404	8	2								
UQCRFS1	7386	hgsc.bcm.edu	37	chr19	29704010	29704010	+	Missense_Mutation	SNP	A	A	C													0.108910891089109	22	0.00894912226699646	2.08683871540888	3.78950939457203	0.825601175288023	0.00304369518222121	0.062903033765905	11	cgcgaacgggcctgagcgggAtgctaccgacaacatggcga					rs8100724	byfrequency	TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	UQCRFS1-226	NM_006003	exon1	c.T16G	p.S6A	AGCGGGATGCTAC	.	7	7	0	0	A|0.065;C|0.935	0	0	0	0	0	C	29704010	A	C	29704010	3	2	4	1	0	0	0	0	1	0	0	0	17059	333	12	5	816	5	UQCRFS1	19	29704010	Missense_Mutation	SNP	A	TCGA-OR-A5J4-01A-11D-A29I-10	8	29704010	29424973	166	405	8	2								
RGS9BP	388531	hgsc.bcm.edu	37	chr19	33167455	33167455	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.108910891089109	22	0.00894912226699646	2.08683871540888	3.78950939457203	0.825601175288023	0.00304369518222121	0.062903033765905	11	tggaagcggacatgcgacgcGcgctggagctgggcgccgcg	19	12	0	0	rs259290	byfrequency	TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	RGS9BP-90	NM_207391	exon1	c.G286T	p.A96S	CGACGCGCGCTGG	.	6	6	0	0	G|0.540;T|0.460	0	0	0	0	0	T	33167455	G	T	33167455	3	4	4	1	0	0	0	0	1	0	0	0	13349	1087	38	2	288	2	RGS9BP	19	33167455	Missense_Mutation	SNP	G	TCGA-OR-A5J4-01A-11D-A29I-10	3463445	33167455	25961528	167	406										
ZNF296	162979	hgsc.bcm.edu	37	chr19	45579614	45579614	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.108910891089109	22	0.00894912226699646	2.08683871540888	3.78950939457203	0.825601175288023	0.00304369518222121	0.062903033765905	11	actcggcggggcgcgctgccGgccttgcggcgggacatgag	19	13	0	1	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	ZNF296-90	NM_145288	exon1	c.C18G	p.A6A	GCTGCCGGCCTTG	.	9	8	1	0	.	0	0	0	0	0	C	45579614	G	C	45579614	2	2	4	1	0	0	0	0	0	0	0	1	17865	1103	39	2		2	ZNF296	19	45579614	Silent	SNP	G	TCGA-OR-A5J4-01A-11D-A29I-10	12412159	45579614	13549369	168	407										
SYMPK	8189	broad.mit.edu	37	chr19	46321272	46321272	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.108910891089109	22	0.00894912226699646	2.08683871540888	3.78950939457203	0.825601175288023	0.00304369518222121	0.062903033765905	11	cgaagccccccaggcgggggTacatggtcagggactggatg	17	11	1	0	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	SYMPK-91	NM_004819	exon23	c.A3026C	p.Y1009S	CGGGGGTACATGG	.	118	23	85	9	.	0	0	0	0	0	G	46321272	T	G	46321272	3	3	4	1	0	0	0	0	1	0	0	0	15476	1638	57	5	818	5	SYMPK	19	46321272	Missense_Mutation	SNP	T	TCGA-OR-A5J4-01A-11D-A29I-10	741658	46321272	12807711	169	408										
SPHK2	56848	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	49131974	49131974	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.108910891089109	22	0.00894912226699646	2.08683871540888	3.78950939457203	0.825601175288023	0.00304369518222121	0.062903033765905	11	ggcctcgacctgttgctcaaCtgctcactgttgctgtgccg	11	14	2	0	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	SPHK2-658	NM_020126	exon7	c.C909G	p.N303K	GCTCAACTGCTCA	.	161	39	102	0	.	0	0	0	0	0	G	49131974	C	G	49131974	3	3	4	1	0	0	0	0	1	0	0	0	15084	564	20	3	931	3	SPHK2	19	49131974	Missense_Mutation	SNP	C	TCGA-OR-A5J4-01A-11D-A29I-10	2810702	49131974	9997009	170	409										
NTN5	126147	hgsc.bcm.edu	37	chr19	49164952	49164952	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.108910891089109	22	0.00894912226699646	2.08683871540888	3.78950939457203	0.825601175288023	0.00304369518222121	0.062903033765905	11	gtctagtgctccggcctgggActgggtgtgggtgcccgcac	17	12	1	0	rs281392	byfrequency	TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	NTN5-136	NM_145807	exon7	c.T1452C	p.S484S	CCTGGGACTGGGT	.	5	5	0	0	A|0.464;G|0.536	0	0	0	0	0	G	49164952	A	G	49164952	2	3	4	1	0	0	0	0	0	0	0	1	10732	272	10	4		4	NTN5	19	49164952	Silent	SNP	A	TCGA-OR-A5J4-01A-11D-A29I-10	32978	49164952	9964031	171	410										
KCNA7	3743	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	49573389	49573389	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.108910891089109	22	0.00894912226699646	2.08683871540888	3.78950939457203	0.825601175288023	0.00304369518222121	0.062903033765905	11	ggtagctcaggtacctccccGtccaccagccccccattggc	9	19	1	0	rs145070146		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	KCNA7-90	NM_031886	exon2	c.C1302T	p.D434D	CTCCCCGTCCACC	.	192	39	145	0	G|1.000;A|0.000	0	0	0	0	0	A	49573389	G	A	49573389	2	1	4	1	0	0	0	0	0	0	0	1	8029	1136	40	1		1	KCNA7	19	49573389	Silent	SNP	G	TCGA-OR-A5J4-01A-11D-A29I-10	408437	49573389	9555594	172	411										
KLK7	5650	hgsc.bcm.edu;bcgsc.ca	37	chr19	51485656	51485656	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.108910891089109	22	0.00894912226699646	2.08683871540888	3.78950939457203	0.825601175288023	0.00304369518222121	0.062903033765905	11	aggagaagggatcttgccatGgtgccctgctgagccgctca	14	11	2	2	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	KLK7-650	NM_001243126	exon2	c.C127A	p.H43N	TGCCATGGTGCCC	.	65	4	63	0	.	0	0	0	0	0	T	51485656	G	T	51485656	3	4	4	1	0	0	0	0	1	0	0	0	8430	1363	47	3	781	3	KLK7	19	51485656	Missense_Mutation	SNP	G	TCGA-OR-A5J4-01A-11D-A29I-10	1912267	51485656	7643327	173	412										
LILRA1	11024	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	55105904	55105904	+	Splice_Site	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.108910891089109	22	0.00894912226699646	2.08683871540888	3.78950939457203	0.825601175288023	0.00304369518222121	0.062903033765905	11	ctcacagggaactctcttccAgggctgagtctgggcccccg	12	15	3	1	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	LILRA1-93	NM_006863	exon3	c.35-2A>G	.	TCTTCCAGGGCTG	.	188	27	111	0	.	0	0	0	0	0	G	55105904	A	G	55105904	5	3	4	1	0	0	0	0	0	0	1	0	8807	202	7	4	39	4	LILRA1	19	55105904	Splice_Site	SNP	A	TCGA-OR-A5J4-01A-11D-A29I-10	3620248	55105904	4023079	174	413										
LILRB1	10859	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	55144484	55144484	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.108910891089109	22	0.00894912226699646	2.08683871540888	3.78950939457203	0.825601175288023	0.00304369518222121	0.062903033765905	11	caggacagttctatgacagaGtctccctctcggtgcagccg	11	13	3	2	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	LILRB1-137	NM_001081637	exon7	c.G976T	p.V326F	GACAGAGTCTCCC	.	184	41	102	0	.	0	0	0	0	0	T	55144484	G	T	55144484	3	4	4	1	0	0	0	0	1	0	0	0	8813	1029	36	3	998	3	LILRB1	19	55144484	Missense_Mutation	SNP	G	TCGA-OR-A5J4-01A-11D-A29I-10	38580	55144484	3984499	175	414										
KIR2DL1	3802	broad.mit.edu;ucsc.edu	37	chr19	55286648	55286648	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.108910891089109	22	0.00894912226699646	2.08683871540888	3.78950939457203	0.825601175288023	0.00304369518222121	0.062903033765905	11	aaaccttctctctcagcccaGctgggccccacggttctggc	9	17	3	0	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	KIR2DL1-90	NM_014218	exon4	c.G402T	p.Q134H	AGCCCAGCTGGGC	.	60	9	48	0	.	0	0	0	0	0	T	55286648	G	T	55286648	3	4	4	1	0	0	0	0	1	0	0	0	8337	962	34	3	416	3	KIR2DL1	19	55286648	Missense_Mutation	SNP	G	TCGA-OR-A5J4-01A-11D-A29I-10	142164	55286648	3842335	176	415										
ZNF671	79891	broad.mit.edu	37	chr19	58232936	58232936	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.108910891089109	22	0.00894912226699646	2.08683871540888	3.78950939457203	0.825601175288023	0.00304369518222121	0.062903033765905	11	ccaggtgtaaggtatctttcAatattgggccacatatgtca	9	8	3	0	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	ZNF671-91	NM_024833	exon4	c.T518G	p.L173W	TCTTTCAATATTG	.	238	4	178	0	.	0	0	0	0	0	C	58232936	A	C	58232936	3	2	4	1	0	0	0	0	1	0	0	0	18115	131	5	5	1090	5	ZNF671	19	58232936	Missense_Mutation	SNP	A	TCGA-OR-A5J4-01A-11D-A29I-10	2946288	58232936	896047	177	416										
EPB41L1	2036	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr20	34776286	34776286	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.108910891089109	22	0.00894912226699646	2.08683871540888	3.78950939457203	0.825601175288023	0.00304369518222121	0.062903033765905	11	caggactctgagggcatcgaCatcatgttaggcgtttgtgc	13	9	2	1	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	EPB41L1-93	NM_001258329	exon10	c.C891T	p.D297D	CATCGACATCATG	.	180	43	128	1	.	0	0	0	0	0	T	34776286	C	T	34776286	2	4	4	1	0	0	0	0	0	0	0	1	5165	477	17	3		3	EPB41L1	20	34776286	Silent	SNP	C	TCGA-OR-A5J4-01A-11D-A29I-10		34776286	28249234	178	417										
SLA2	84174	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr20	35242711	35242711	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.108910891089109	22	0.00894912226699646	2.08683871540888	3.78950939457203	0.825601175288023	0.00304369518222121	0.062903033765905	11	ggagtccccaactttacctgTccagctctttccagttgagt	8	13	1	1	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	SLA2-90	NM_032214	exon7	c.A662G	p.D221G	TACCTGTCCAGCT	.	190	33	114	0	.	0	0	0	0	0	C	35242711	T	C	35242711	3	2	4	1	0	0	0	0	1	0	0	0	14399	1667	58	4	131	4	SLA2	20	35242711	Missense_Mutation	SNP	T	TCGA-OR-A5J4-01A-11D-A29I-10	466425	35242711	27782809	179	418										
KIAA1755	85449	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr20	36869832	36869832	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.108910891089109	22	0.00894912226699646	2.08683871540888	3.78950939457203	0.825601175288023	0.00304369518222121	0.062903033765905	11	atgtcctgcccttacccttgGccaaactctgggcaggaagc	10	14	1	0	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	KIAA1755-95	NM_001029864	exon3	c.C701A	p.A234D	CCCTTGGCCAAAC	.	105	35	105	1	.	0	0	0	0	0	T	36869832	G	T	36869832	3	4	4	1	0	0	0	0	1	0	0	0	8278	1203	42	3	2949	3	KIAA1755	20	36869832	Missense_Mutation	SNP	G	TCGA-OR-A5J4-01A-11D-A29I-10	1627121	36869832	26155688	180	419										
CTSA	5476	hgsc.bcm.edu;broad.mit.edu	37	chr20	44520258	44520258	+	Frame_Shift_Del	DEL	G	G	-													0.108910891089109	22	0.00894912226699646	2.08683871540888	3.78950939457203	0.825601175288023	0.00304369518222121	0.062903033765905	11	ctgctgctgctgctgctgctGctgctagtgtcctgggcgtc					rs3080212	alternate_allele	TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	CTSA-91	NM_000308	exon2	c.105delG	p.L35fs	GCTGCTGCTGCTA	.	71	19	8	0	-|0.668;CTG|0.332	0	0	0	0	0	-	44520258	G	-	44520258	7	5	4	1	0	1	0	1	0	0	0	0	4035	1306	46	0	111	0	CTSA	20	44520258	Frame_Shift_Del	DEL	G	TCGA-OR-A5J4-01A-11D-A29I-10	7650426	44520258	18505262	181	420	9	2								
CTSA	5476	hgsc.bcm.edu;broad.mit.edu	37	chr20	44520260	44520261	+	Frame_Shift_Del	DEL	TG	TG	-													0.108910891089109	22	0.00894912226699646	2.08683871540888	3.78950939457203	0.825601175288023	0.00304369518222121	0.062903033765905	11	gctgctgctgctgctgctgcTgctagtgtcctgggcgtccc					rs79061377	bycluster;by1000genomes	TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	TG	TG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	CTSA-91	NM_000308	exon2	c.107_108del	p.36_36del	TGCTGCTGCTAGT	.	71	18	9	0	.	0	0	0	0	0	-	44520261	TG	-	44520260	7	5	4	1	0	1	0	1	0	0	0	0	4035	1580	55	0	113	0	CTSA	20	44520260	Frame_Shift_Del	DEL	TG	TCGA-OR-A5J4-01A-11D-A29I-10	2	44520260	18505260	182	421	9	2								
ETS2	2114	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr21	40188949	40188949	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.108910891089109	22	0.00894912226699646	2.08683871540888	3.78950939457203	0.825601175288023	0.00304369518222121	0.062903033765905	11	cagaaaaccaagaaaagacaGaagatcaatatgaagaaaat	7	5	1	7	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	ETS2-849	NM_001256295	exon7	c.G943T	p.E315X	AAGACAGAAGATC	.	66	24	104	0	.	0	0	0	0	0	T	40188949	G	T	40188949	4	4	4	1	0	0	0	0	0	1	0	0	5289	943	33	3	541	3	ETS2	21	40188949	Nonsense_Mutation	SNP	G	TCGA-OR-A5J4-01A-11D-A29I-10		40188949	7940946	183	422										
GNB1L	54584	broad.mit.edu	37	chr22	19808792	19808792	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.108910891089109	22	0.00894912226699646	2.08683871540888	3.78950939457203	0.825601175288023	0.00304369518222121	0.062903033765905	11	ccctgagcctgggctccttcGcagaagtgcagcgcatgcac	12	15	0	2	rs115309470	byfrequency	TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	GNB1L-290	NM_053004	exon3	c.C87T	p.C29C	TCCTTCGCAGAAG	.	93	3	97	0	G|0.998;A|0.002	0	0	0	0	0	A	19808792	G	A	19808792	2	1	4	1	0	0	0	0	0	0	0	1	6536	1079	38	1		1	GNB1L	22	19808792	Silent	SNP	G	TCGA-OR-A5J4-01A-11D-A29I-10		19808792	31495774	184	423										
SCARF2	91179	hgsc.bcm.edu	37	chr22	20780296	20780296	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.108910891089109	22	0.00894912226699646	2.08683871540888	3.78950939457203	0.825601175288023	0.00304369518222121	0.062903033765905	11	gcttggtggcggggtcaggtGgcggcggtttcctgcgctcg	20	10	1	0	rs9680797	byfrequency	TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	SCARF2-341	NM_153334	exon11	c.C1982T	p.P661L	TCAGGTGGCGGCG	.	8	8	3	0	G|0.977;A|0.023	0	0	0	0	0	A	20780296	G	A	20780296	3	1	4	1	0	0	0	0	1	0	0	0	13919	1348	47	3	634	3	SCARF2	22	20780296	Missense_Mutation	SNP	G	TCGA-OR-A5J4-01A-11D-A29I-10	971504	20780296	30524270	185	424										
NEFH	4744	bcgsc.ca	37	chr22	29886043	29886043	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.108910891089109	22	0.00894912226699646	2.08683871540888	3.78950939457203	0.825601175288023	0.00304369518222121	0.062903033765905	11	ggcgaaatctcccctgaaggAggatgccaaggcccctgaga	13	12	1	2	rs165602	bycluster;byfrequency;bysubmitter;by2hit2allele;by1000genomes	TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	NEFH-90	NM_021076	exon4	c.A2414C	p.E805A	TGAAGGAGGATGC	.	81	5	79	0	A|0.871;C|0.129	0	0	0	0	0	C	29886043	A	C	29886043	3	2	4	1	0	0	0	0	1	0	0	0	10343	304	11	5	2428	5	NEFH	22	29886043	Missense_Mutation	SNP	A	TCGA-OR-A5J4-01A-11D-A29I-10	9105747	29886043	21418523	186	425										
TRIOBP	11078	hgsc.bcm.edu	37	chr22	38122462	38122462	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.108910891089109	22	0.00894912226699646	2.08683871540888	3.78950939457203	0.825601175288023	0.00304369518222121	0.062903033765905	11	cagcagcgggggccgcacccAcagccctggccgtgcagagg	16	16	0	1	rs739138	byfrequency	TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	TRIOBP-136	NM_001039141	exon7	c.A3899G	p.H1300R	GCACCCACAGCCC	.	7	5	0	0	A|0.354;G|0.646	0	0	0	0	0	G	38122462	A	G	38122462	3	3	4	1	0	0	0	0	1	0	0	0	16591	159	6	4	3917	4	TRIOBP	22	38122462	Missense_Mutation	SNP	A	TCGA-OR-A5J4-01A-11D-A29I-10	8236419	38122462	13182104	187	426										
TRIOBP	11078	broad.mit.edu	37	chr22	38131006	38131006	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.108910891089109	22	0.00894912226699646	2.08683871540888	3.78950939457203	0.825601175288023	0.00304369518222121	0.062903033765905	11	cgcgtggctctgagaggcgaCccgagcttgactggagggat	17	10	1	2	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	TRIOBP-136	NM_001039141	exon9	c.C4663A	p.P1555T	AGGCGACCCGAGC	.	59	12	46	2	.	0	0	0	0	0	A	38131006	C	A	38131006	3	1	4	1	0	0	0	0	1	0	0	0	16591	507	18	3	4689	3	TRIOBP	22	38131006	Missense_Mutation	SNP	C	TCGA-OR-A5J4-01A-11D-A29I-10	8544	38131006	13173560	188	427										
MCHR1	2847	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr22	41075522	41075522	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.108910891089109	22	0.00894912226699646	2.08683871540888	3.78950939457203	0.825601175288023	0.00304369518222121	0.062903033765905	11	gcggcagcggctgccaggctAcggaggaagacccccttccc	14	16	0	1	rs147389509	byfrequency	TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	MCHR1-90	NM_005297	exon1	c.A73G	p.T25A	CAGGCTACGGAGG	.	145	40	111	0	A|1.000;G|0.000	0	0	0	0	0	G	41075522	A	G	41075522	3	3	4	1	0	0	0	0	1	0	0	0	9410	391	14	4	75	4	MCHR1	22	41075522	Missense_Mutation	SNP	A	TCGA-OR-A5J4-01A-11D-A29I-10	2944516	41075522	10229044	189	428										
BRD1	23774	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr22	50198009	50198009	+	Splice_Site	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.108910891089109	22	0.00894912226699646	2.08683871540888	3.78950939457203	0.825601175288023	0.00304369518222121	0.062903033765905	11	gattcgcaatcctatttaacCtaaaacacaaacactcagtg	4	11	1	0	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	BRD1-91	NM_014577	exon3	c.1368-1G>T	.	TTTAACCTAAAAC	.	150	55	189	0	.	0	0	0	0	0	A	50198009	C	A	50198009	5	1	4	1	0	0	0	0	0	0	1	0	1504	695	24	3	1853	3	BRD1	22	50198009	Splice_Site	SNP	C	TCGA-OR-A5J4-01A-11D-A29I-10	9122487	50198009	1106557	190	429										
PANX2	56666	broad.mit.edu	37	chr22	50617594	50617595	+	Frame_Shift_Ins	INS	-	-	C													0.108910891089109	22	0.00894912226699646	2.08683871540888	3.78950939457203	0.825601175288023	0.00304369518222121	0.062903033765905	11	cgggaggaggaggacgggggINScccccgcctgccgcaggacg					novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	PANX2-131	NM_052839	exon3	c.1922_1923insC	p.G641fs	ACGGGGGCCCCCG	.	89	15	29	0	.	0	0	0	0	0	C	50617595	-	C	50617594	7	5	4	1	0	1	1	0	0	0	0	0	11450	1203	42	0	1932	0	PANX2	22	50617594	Frame_Shift_Ins	INS	-	TCGA-OR-A5J4-01A-11D-A29I-10	419585	50617594	686972	191	430										
CHKB	1120	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr22	51019907	51019907	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.108910891089109	22	0.00894912226699646	2.08683871540888	3.78950939457203	0.825601175288023	0.00304369518222121	0.062903033765905	11	gaaaggcatctccatgccatGaaattgcgccatcttcgtgg	10	11	2	1	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	CHKB-90	NM_005198	exon4	c.C523A	p.H175N	TGCCATGAAATTG	.	79	42	105	0	.	0	0	0	0	0	T	51019907	G	T	51019907	3	4	4	1	0	0	0	0	1	0	0	0	3354	1290	45	3	696	3	CHKB	22	51019907	Missense_Mutation	SNP	G	TCGA-OR-A5J4-01A-11D-A29I-10	402313	51019907	284659	192	431										
WWC3	55841	broad.mit.edu	37	chrX	10035510	10035510	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.108910891089109	22	0.00894912226699646	2.08683871540888	3.78950939457203	0.825601175288023	0.00304369518222121	0.062903033765905	11	gcacaaaatgtgtgaggatgAcagccgctcgtacgccagct	12	11	0	2	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	WWC3-134	NM_015691	exon3	c.A200G	p.D67G	AGGATGACAGCCG	.	350	7	317	0	.	0	0	0	0	0	G	10035510	A	G	10035510	3	3	4	1	0	0	0	0	1	0	0	0	17451	275	10	4	206	4	WWC3	23	10035510	Missense_Mutation	SNP	A	TCGA-OR-A5J4-01A-11D-A29I-10		10035510	145235050	193	432										
MAP3K15	389840	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chrX	19425347	19425347	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.108910891089109	22	0.00894912226699646	2.08683871540888	3.78950939457203	0.825601175288023	0.00304369518222121	0.062903033765905	11	gaaaagtagatttgaaagtcAtcagaattatcatggacata	8	4	3	3	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	MAP3K15-335	NM_001001671	exon13	c.T1803A	p.D601E	AAAGTCATCAGAA	.	251	21	164	0	.	0	0	0	0	0	T	19425347	A	T	19425347	3	4	4	1	0	0	0	0	1	0	0	0	9277	214	8	5	2206	5	MAP3K15	23	19425347	Missense_Mutation	SNP	A	TCGA-OR-A5J4-01A-11D-A29I-10	9389837	19425347	135845213	194	433										
PHEX	5251	broad.mit.edu;bcgsc.ca;mdanderson.org	37	chrX	22117127	22117127	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.108910891089109	22	0.00894912226699646	2.08683871540888	3.78950939457203	0.825601175288023	0.00304369518222121	0.062903033765905	11	gttctctctcccctcagttcGactggctgggctacatcaag	9	14	4	0	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	PHEX-132	NM_000444	exon9	c.G937C	p.D313H	CAGTTCGACTGGC	.	76	21	59	0	.	0	0	0	0	0	C	22117127	G	C	22117127	3	2	4	1	0	0	0	0	1	0	0	0	11848	1058	37	2	971	2	PHEX	23	22117127	Missense_Mutation	SNP	G	TCGA-OR-A5J4-01A-11D-A29I-10	2691780	22117127	133153433	195	434										
KLHL15	80311	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	24006591	24006591	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.108910891089109	22	0.00894912226699646	2.08683871540888	3.78950939457203	0.825601175288023	0.00304369518222121	0.062903033765905	11	atttgttattgagcactgtcCcctcatgtccatatttgtta	6	9	1	1	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	KLHL15-131	NM_030624	exon4	c.G1262T	p.G421V	ACTGTCCCCTCAT	.	272	72	228	1	.	0	0	0	0	0	A	24006591	C	A	24006591	3	1	4	1	0	0	0	0	1	0	0	0	8392	623	22	3	556	3	KLHL15	23	24006591	Missense_Mutation	SNP	C	TCGA-OR-A5J4-01A-11D-A29I-10	1889464	24006591	131263969	196	435										
FAM47C	442444	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chrX	37026574	37026574	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.108910891089109	22	0.00894912226699646	2.08683871540888	3.78950939457203	0.825601175288023	0.00304369518222121	0.062903033765905	11	aaccgccttccaagtacttcGcgaagcgcaagcacaggcgc	10	15	0	0	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	FAM47C-111	NM_001013736	exon1	c.G91A	p.A31T	TACTTCGCGAAGC	.	423	28	368	0	.	0	0	0	0	0	A	37026574	G	A	37026574	3	1	4	1	0	0	0	0	1	0	0	0	5590	1087	38	1	93	1	FAM47C	23	37026574	Missense_Mutation	SNP	G	TCGA-OR-A5J4-01A-11D-A29I-10	13019983	37026574	118243986	197	436										
FAM47C	442444	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	37028029	37028029	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.108910891089109	22	0.00894912226699646	2.08683871540888	3.78950939457203	0.825601175288023	0.00304369518222121	0.062903033765905	11	atctccgcccagagccttctGagactggagtgtcccatctc	9	15	3	2	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	FAM47C-111	NM_001013736	exon1	c.G1546C	p.E516Q	CCTTCTGAGACTG	.	80	29	83	0	.	0	0	0	0	0	C	37028029	G	C	37028029	3	2	4	1	0	0	0	0	1	0	0	0	5590	1291	45	3	1548	3	FAM47C	23	37028029	Missense_Mutation	SNP	G	TCGA-OR-A5J4-01A-11D-A29I-10	1455	37028029	118242531	198	437										
GPR82	27197	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	41586498	41586498	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.108910891089109	22	0.00894912226699646	2.08683871540888	3.78950939457203	0.825601175288023	0.00304369518222121	0.062903033765905	11	gccatgcctttcatgagtatCtatttcctgaaaggtttcca	7	10	2	2	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	GPR82-110	NM_080817	exon3	c.C219G	p.I73M	GAGTATCTATTTC	.	130	41	120	0	.	0	0	0	0	0	G	41586498	C	G	41586498	3	3	4	1	0	0	0	0	1	0	0	0	6732	903	32	3	221	3	GPR82	23	41586498	Missense_Mutation	SNP	C	TCGA-OR-A5J4-01A-11D-A29I-10	4558469	41586498	113684062	199	438										
PORCN	64840	broad.mit.edu	37	chrX	48368343	48368343	+	Silent	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.108910891089109	22	0.00894912226699646	2.08683871540888	3.78950939457203	0.825601175288023	0.00304369518222121	0.062903033765905	11	tgccgcctcctctggaggctCggtaagtgcctgccataccg	12	15	1	0	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	PORCN-133	NM_203475	exon1	c.C135G	p.L45L	GAGGCTCGGTAAG	.	108	12	116	7	.	0	0	0	0	0	G	48368343	C	G	48368343	2	3	4	1	0	0	0	0	0	0	0	1	12287	898	31	2		2	PORCN	23	48368343	Silent	SNP	C	TCGA-OR-A5J4-01A-11D-A29I-10	6781845	48368343	106902217	200	439										
IQSEC2	23096	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	53284064	53284064	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.108910891089109	22	0.00894912226699646	2.08683871540888	3.78950939457203	0.825601175288023	0.00304369518222121	0.062903033765905	11	ctgtctggatggtcctggcaGccctgcggctcaggaaggag	16	11	2	0	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	IQSEC2-178	NM_001111125	exon4	c.C1049G	p.A350G	CTGGCAGCCCTGC	.	182	45	144	0	.	0	0	0	0	0	C	53284064	G	C	53284064	3	2	4	1	0	0	0	0	1	0	0	0	7839	971	34	3	3465	3	IQSEC2	23	53284064	Missense_Mutation	SNP	G	TCGA-OR-A5J4-01A-11D-A29I-10	4915721	53284064	101986496	201	440										
HUWE1	10075	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	53616611	53616611	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.108910891089109	22	0.00894912226699646	2.08683871540888	3.78950939457203	0.825601175288023	0.00304369518222121	0.062903033765905	11	gtatactgtgtctggcagctCatcaagaaggtggaagcagc	13	8	3	1	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	HUWE1-280	NM_031407	exon36	c.G4357A	p.E1453K	GCAGCTCATCAAG	.	225	56	217	1	.	0	0	0	0	0	T	53616611	C	T	53616611	3	4	4	1	0	0	0	0	1	0	0	0	7482	835	29	3	8963	3	HUWE1	23	53616611	Missense_Mutation	SNP	C	TCGA-OR-A5J4-01A-11D-A29I-10	332547	53616611	101653949	202	441										
COL4A6	1288	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	107447550	107447550	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.108910891089109	22	0.00894912226699646	2.08683871540888	3.78950939457203	0.825601175288023	0.00304369518222121	0.062903033765905	11	tattcttaaatgttcactacCttggatcctttcttcccttt	3	11	3	0	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	COL4A6-199	NM_001847	exon12	c.G783T	p.K261N	CACTACCTTGGAT	.	35	16	49	0	.	0	0	0	0	0	A	107447550	C	A	107447550	3	1	4	1	0	0	0	0	1	0	0	0	3701	695	24	3	4428	3	COL4A6	23	107447550	Missense_Mutation	SNP	C	TCGA-OR-A5J4-01A-11D-A29I-10	53830939	107447550	47823010	203	442										
OCRL	4952	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	128722897	128722897	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.108910891089109	22	0.00894912226699646	2.08683871540888	3.78950939457203	0.825601175288023	0.00304369518222121	0.062903033765905	11	tctgtggctgaagcactgctCattttcttggaagccctgcc	10	12	3	1	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	OCRL-206	NM_000276	exon22	c.C2376A	p.L792L	ACTGCTCATTTTC	.	62	8	73	0	.	0	0	0	0	0	A	128722897	C	A	128722897	2	1	4	1	0	0	0	0	0	0	0	1	10852	813	29	3		3	OCRL	23	128722897	Silent	SNP	C	TCGA-OR-A5J4-01A-11D-A29I-10	21275347	128722897	26547663	204	443										
PHF6	84295	broad.mit.edu;bcgsc.ca	37	chrX	133547878	133547878	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.108910891089109	22	0.00894912226699646	2.08683871540888	3.78950939457203	0.825601175288023	0.00304369518222121	0.062903033765905	11	taggtctccacacagaagcaGccctagtgacaccaggccta	9	14	1	2	novel		TCGA-OR-A5J4-01A-11D-A29I-10	TCGA-OR-A5J4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d76daa9-a336-435c-aeef-47344d97ac5b	75574849-0529-454a-92ea-2580f79cc974	.	PHF6-131	NM_032335	exon7	c.G614T	p.S205I	GAAGCAGCCCTAG	.	312	8	336	0	.	0	0	0	0	0	T	133547878	G	T	133547878	3	4	4	1	0	0	0	0	1	0	0	0	11867	971	34	3	636	3	PHF6	23	133547878	Missense_Mutation	SNP	G	TCGA-OR-A5J4-01A-11D-A29I-10	4824981	133547878	21722682	205	444										
SCNN1D	6339	hgsc.bcm.edu	37	chr1	1226692	1226692	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	cctgtggtttggggcctccgTcctctccctcctggagctcc	11	17	1	0	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	SCNN1D-90	NM_001130413	exon18	c.T2111C	p.V704A	CCTCCGTCCTCTC	.	40	38	4	0	.	3	0	3	0	0	C	1226692	T	C	1226692	3	2	5	1	0	0	0	0	1	0	0	0	13964	1667	58	4	1875	4	SCNN1D	1	1226692	Missense_Mutation	SNP	T	TCGA-OR-A5J5-01A-11D-A29I-10		1226692	248023929	1	445										
CHD5	26038	bcgsc.ca;mdanderson.org	37	chr1	6194223	6194223	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	cacacggtgcccctcatcccGcagtttcttcagcatcttct	6	17	5	0	rs200489902		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	CHD5-719	NM_015557	exon20	c.C3109T	p.R1037W	CATCCCGCAGTTT	.	41	34	39	1	G|0.999;A|0.000	0	0	0	0	0	A	6194223	G	A	6194223	3	1	5	1	0	0	0	0	1	0	0	0	3334	1086	38	1	2843	1	CHD5	1	6194223	Missense_Mutation	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10	4967531	6194223	243056398	2	446										
PLEKHG5	57449	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr1	6534211	6534211	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	tccaccttgccctcatctccAggcttggctggggctgcatg	11	15	2	0	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	PLEKHG5-652	NM_001265592	exon8	c.T690C	p.P230P	ATCTCCAGGCTTG	.	58	43	52	0	.	5	0	5	0	0	G	6534211	A	G	6534211	2	3	5	1	0	0	0	0	0	0	0	1	12102	175	7	4		4	PLEKHG5	1	6534211	Silent	SNP	A	TCGA-OR-A5J5-01A-11D-A29I-10	339988	6534211	242716410	3	447										
PER3	8863	broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr1	7887490	7887490	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	tgcaccggaaggcctgcatgGgctgcccttgtccgagggct	15	13	0	0	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	PER3-93	NM_016831	exon17	c.G2477T	p.G826V	TGCATGGGCTGCC	.	80	66	53	1	.	0	0	0	0	0	T	7887490	G	T	7887490	3	4	5	1	0	0	0	0	1	0	0	0	11760	1232	43	3	2543	3	PER3	1	7887490	Missense_Mutation	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10	1353279	7887490	241363131	4	448										
UBE4B	10277	broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr1	10197164	10197164	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	ttctgagccgaaattccctaCggagtgcttctttctcaccc	7	14	3	1	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	UBE4B-229	NM_001105562	exon17	c.C2264T	p.T755M	TCCCTACGGAGTG	.	66	57	91	1	.	0	0	0	0	0	T	10197164	C	T	10197164	3	4	5	1	0	0	0	0	1	0	0	0	16921	536	19	1	2330	1	UBE4B	1	10197164	Missense_Mutation	SNP	C	TCGA-OR-A5J5-01A-11D-A29I-10	2309674	10197164	239053457	5	449										
MASP2	10747	hgsc.bcm.edu	37	chr1	11105562	11105562	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	cagtggtggtcgcaggtgggCgcctctcccggggccacctg	17	14	1	0	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	MASP2-94	NM_139208	exon4	c.G447A	p.A149A	GGTGGGCGCCTCT	.	134	115	6	0	.	0	0	0	0	0	T	11105562	C	T	11105562	2	4	5	1	0	0	0	0	0	0	0	1	9351	755	27	1		1	MASP2	1	11105562	Silent	SNP	C	TCGA-OR-A5J5-01A-11D-A29I-10	908398	11105562	238145059	6	450										
SPEN	23013	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr1	16254767	16254767	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	cacgatactacgatgatcctCgggaatacagggattacagg	11	9	0	1	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	SPEN-298	NM_015001	exon11	c.C2032T	p.R678W	GATCCTCGGGAAT	.	162	149	230	2	.	0	0	0	0	0	T	16254767	C	T	16254767	3	4	5	1	0	0	0	0	1	0	0	0	15075	875	31	1	2074	1	SPEN	1	16254767	Missense_Mutation	SNP	C	TCGA-OR-A5J5-01A-11D-A29I-10	5149205	16254767	232995854	7	451										
ARHGEF10L	55160	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	17982377	17982377	+	Frame_Shift_Del	DEL	G	G	-													0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	tgggtctctgctcccaggtcGggggcggacaggaaggcgca					novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	ARHGEF10L-292	NM_018125	exon24	c.2485delG	p.G829fs	CAGGTCGGGGGCG	.	94	83	76	0	.	0	0	0	0	0	-	17982377	G	-	17982377	7	5	5	1	0	1	0	1	0	0	0	0	895	1116	39	0	2575	0	ARHGEF10L	1	17982377	Frame_Shift_Del	DEL	G	TCGA-OR-A5J5-01A-11D-A29I-10	1727610	17982377	231268244	8	452										
MRTO4	51154	bcgsc.ca	37	chr1	19584004	19584004	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	ttcaccaaccgcacaaaggaGgaggtgaatgagtaagtact	11	8	1	2	rs1042380	byfrequency	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	MRTO4-90	NM_016183	exon5	c.G330A	p.E110E	AAAGGAGGAGGTG	.	73	5	81	0	G|0.711;A|0.289	0	0	0	0	0	A	19584004	G	A	19584004	2	1	5	1	0	0	0	0	0	0	0	1	9880	991	35	3		3	MRTO4	1	19584004	Silent	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10	1601627	19584004	229666617	9	453										
EIF4G3	8672	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	21276548	21276548	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	gtgctggcagcaagatgagcGctctccacagtcccataaac	10	13	1	2	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	EIF4G3-91	NM_001198803	exon13	c.C636T	p.S212S	ATGAGCGCTCTCC	.	93	44	79	0	.	3	2	1	0	0	A	21276548	G	A	21276548	2	1	5	1	0	0	0	0	0	0	0	1	5051	1078	38	1		1	EIF4G3	1	21276548	Silent	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10	1692544	21276548	227974073	10	454										
SRRM1	10250	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	24993380	24993380	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	ttctcccgcccctcctcctcGacggcgcaggactcccacac	7	22	1	0	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	SRRM1-93	NM_005839	exon13	c.G1703A	p.R568Q	CTCCTCGACGGCG	.	395	149	509	0	.	34	18	16	0	0	A	24993380	G	A	24993380	3	1	5	1	0	0	0	0	1	0	0	0	15205	1058	37	1	1753	1	SRRM1	1	24993380	Missense_Mutation	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10	3716832	24993380	224257241	11	455										
C1orf172	126695	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	27278436	27278436	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	cttgagccgctggccatcccGccggctggggggtgcacgat	16	14	0	1	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	C1orf172-154	NM_152365	exon2	c.C436T	p.R146W	CATCCCGCCGGCT	.	108	8	55	0	.	0	0	0	0	0	A	27278436	G	A	27278436	3	1	5	1	0	0	0	0	1	0	0	0	2019	1086	38	1	772	1	C1orf172	1	27278436	Missense_Mutation	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10	2285056	27278436	221972185	12	456										
SLC9A1	6548	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	27429001	27429001	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	tggggctccttggagcgctcGccagctatcagacacttctt	11	13	2	1	rs144261466		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	SLC9A1-91	NM_003047	exon8	c.C1695T	p.G565G	GCGCTCGCCAGCT	.	63	59	58	0	G|1.000;A|0.000	5	1	4	0	0	A	27429001	G	A	27429001	2	1	5	1	0	0	0	0	0	0	0	1	14744	1074	38	1		1	SLC9A1	1	27429001	Silent	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10	150565	27429001	221821620	13	457										
ZSCAN20	7579	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	33954759	33954759	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	ctctcccaaagatggggagcGttggagattgggaggtgaca	16	7	1	3	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	ZSCAN20-93	NM_145238	exon4	c.G649A	p.V217I	GGGAGCGTTGGAG	.	167	82	173	1	.	0	0	0	0	0	A	33954759	G	A	33954759	3	1	5	1	0	0	0	0	1	0	0	0	18269	1145	40	1	659	1	ZSCAN20	1	33954759	Missense_Mutation	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10	6525758	33954759	215295862	14	458										
CSF3R	1441	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	36935323	36935323	+	Frame_Shift_Del	DEL	G	G	-													0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	ttgttgctattgctcgcgctGggggggcccaggccccactc					novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	CSF3R-515	NM_156039	exon11	c.1404delC	p.P468fs	CGCGCTGGGGGGG	.	56	39	26	0	.	0	0	0	0	0	-	36935323	G	-	36935323	7	5	5	1	0	1	0	1	0	0	0	0	3943	1335	47	0	1324	0	CSF3R	1	36935323	Frame_Shift_Del	DEL	G	TCGA-OR-A5J5-01A-11D-A29I-10	2980564	36935323	212315298	15	459										
KIAA0754	643314	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	39876656	39876656	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	gcctgtagaatcagaagctgTagcaacaagtggtaacacag	11	8	1	2	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	.	NM_015038	exon1	c.T719C	p.V240A	AAGCTGTAGCAAC	.	100	77	147	0	.	0	0	0	0	0	C	39876656	T	C	39876656	3	2	5	1	0	0	0	0	1	0	0	0	8213	1638	57	4	721	4	KIAA0754	1	39876656	Missense_Mutation	SNP	T	TCGA-OR-A5J5-01A-11D-A29I-10	2941333	39876656	209373965	16	460										
KIAA0754	643314	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	39880128	39880128	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	aaagtgcctctggctgcaacCgctggattaaattcagatga	10	9	2	2	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	.	NM_015038	exon1	c.C4191T	p.T1397T	TGCAACCGCTGGA	.	143	123	127	0	.	0	0	0	0	0	T	39880128	C	T	39880128	2	4	5	1	0	0	0	0	0	0	0	1	8213	639	23	1		1	KIAA0754	1	39880128	Silent	SNP	C	TCGA-OR-A5J5-01A-11D-A29I-10	3472	39880128	209370493	17	461										
TMEM125	128218	hgsc.bcm.edu	37	chr1	43738798	43738798	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	ctgaccctggccgggctggcCgccgcccctgcccctgctcg	13	21	0	1	rs139782659		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	TMEM125-153	NM_144626	exon4	c.C405T	p.A135A	GCTGGCCGCCGCC	.	31	27	1	0	C|1.000;T|0.000	0	0	0	0	0	T	43738798	C	T	43738798	2	4	5	1	0	0	0	0	0	0	0	1	16074	639	23	1		1	TMEM125	1	43738798	Silent	SNP	C	TCGA-OR-A5J5-01A-11D-A29I-10	3858670	43738798	205511823	18	462										
ARTN	9048	hgsc.bcm.edu	37	chr1	44402375	44402375	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	aagcggtctccttcatggacGtcaacagcacctggagaacc	10	13	3	1	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	ARTN-90	NM_001136215	exon4	c.G625A	p.V209I	ATGGACGTCAACA	.	85	30	7	0	.	0	0	0	0	0	A	44402375	G	A	44402375	3	1	5	1	0	0	0	0	1	0	0	0	1002	1145	40	1	722	1	ARTN	1	44402375	Missense_Mutation	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10	663577	44402375	204848246	19	463										
SLC5A9	200010	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	48701436	48701436	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	tgattgccgtgatcatggccGctctcatgagctcactcacc	9	14	4	3	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	SLC5A9-93	NM_001135181	exon11	c.G1252A	p.A418T	ATGGCCGCTCTCA	.	255	15	313	0	.	0	0	0	0	0	A	48701436	G	A	48701436	3	1	5	1	0	0	0	0	1	0	0	0	14707	1087	38	1	1294	1	SLC5A9	1	48701436	Missense_Mutation	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10	4299061	48701436	200549185	20	464										
PRKAA2	5563	broad.mit.edu;bcgsc.ca	37	chr1	57173340	57173341	+	Frame_Shift_Ins	INS	-	-	T													0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	ctgggcagtcacaccatggaINStttttttgaaatgtgtgcca					novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	PRKAA2-885	NM_006252	exon9	c.1613_1614insT	p.D538fs	CCATGGATTTTTT	.	88	9	124	0	.	0	0	0	0	0	T	57173341	-	T	57173340	7	5	5	1	0	1	1	0	0	0	0	0	12526	333	12	0	1647	0	PRKAA2	1	57173340	Frame_Shift_Ins	INS	-	TCGA-OR-A5J5-01A-11D-A29I-10	8471904	57173340	192077281	21	465										
C8B	732	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	57415368	57415368	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	cattttctctgtgacattgcGttcaaaatctgagtatgatt	7	7	3	3	rs150146785	byfrequency	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	C8B-92	NM_000066	exon6	c.C724T	p.R242C	CATTGCGTTCAAA	.	60	51	98	1	G|0.999;A|0.001	0	0	0	0	0	A	57415368	G	A	57415368	3	1	5	1	0	0	0	0	1	0	0	0	2423	1145	40	1	1079	1	C8B	1	57415368	Missense_Mutation	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10	242028	57415368	191835253	22	466										
DOCK7	85440	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	62940939	62940939	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	tgaagcattttggggtctgcGggatcctgatgtgttgcaaa	14	6	1	2	rs202231787		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	DOCK7-92	NM_001271999	exon46	c.C6012T	p.P2004P	GTCTGCGGGATCC	.	108	10	139	0	G|0.999;A|0.001	4	3	1	0	0	A	62940939	G	A	62940939	2	1	5	1	0	0	0	0	0	0	0	1	4703	1103	39	1		1	DOCK7	1	62940939	Silent	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10	5525571	62940939	186309682	23	467										
FNDC7	163479	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	109273459	109273459	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	aaccactgcctcctaggatgCatcacatgtggcatcaatta	7	12	2	0	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	FNDC7-92	NM_001144937	exon9	c.C1788T	p.C596C	AGGATGCATCACA	.	134	8	178	0	.	0	0	0	0	0	T	109273459	C	T	109273459	2	4	5	1	0	0	0	0	0	0	0	1	5992	718	25	3		3	FNDC7	1	109273459	Silent	SNP	C	TCGA-OR-A5J5-01A-11D-A29I-10	46332520	109273459	139977162	24	468										
MYBPHL	343263	ucsc.edu;bcgsc.ca	37	chr1	109839774	109839774	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	gtagcgctgaagccccaaacGtccaccagcttaatactctg	8	14	1	1	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	MYBPHL-92	NM_001010985	exon4	c.C468T	p.D156D	CCAAACGTCCACC	.	163	150	196	3	.	0	0	0	0	0	A	109839774	G	A	109839774	2	1	5	1	0	0	0	0	0	0	0	1	10043	1136	40	1		1	MYBPHL	1	109839774	Silent	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10	566315	109839774	139410847	25	469										
CSF1	1435	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	110467421	110467421	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	catcaagagcctcagagagcGgattctcccttggagcaacc	10	13	3	2	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	CSF1-91	NM_000757	exon7	c.G1593A	p.A531A	GAGAGCGGATTCT	.	163	67	248	0	.	0	0	0	0	0	A	110467421	G	A	110467421	2	1	5	1	0	0	0	0	0	0	0	1	3937	1103	39	1		1	CSF1	1	110467421	Silent	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10	627647	110467421	138783200	26	470										
MOV10	4343	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr1	113237220	113237220	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	ttcctgtggcacctcgggacGtcccgctgctgccctcagat	11	16	1	1	rs112768939		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	MOV10-95	NM_020963	exon9	c.G1441A	p.V481I	CGGGACGTCCCGC	.	107	94	55	0	A|0.000;C|0.000;G|0.999	3	0	3	0	0	A	113237220	G	A	113237220	3	1	5	1	0	0	0	0	1	0	0	0	9746	1145	40	1	1471	1	MOV10	1	113237220	Missense_Mutation	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10	2769799	113237220	136013401	27	471										
GDAP2	54834	hgsc.bcm.edu;bcgsc.ca	37	chr1	118439565	118439568	+	Frame_Shift_Del	DEL	GAAA	GAAA	-													0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	gcaaaagcatgagagccaatGaaagagagatcaactcccaa					novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	GAAA	GAAA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	GDAP2-92	NM_017686	exon8	c.840_843del	p.280_281del	GCCAATGAAAGAG	.	53	46	97	1	.	0	0	0	0	0	-	118439568	GAAA	-	118439565	7	5	5	1	0	1	0	1	0	0	0	0	6329	1281	45	0	723	0	GDAP2	1	118439565	Frame_Shift_Del	DEL	GAAA	TCGA-OR-A5J5-01A-11D-A29I-10	5202345	118439565	130811056	28	472										
ADAMTSL4	54507	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	150531111	150531111	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	ctactgcctggttccacagcGactggagctccaaggtgagc	12	13	0	1	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	ADAMTSL4-92	NM_019032	exon15	c.G2545A	p.D849N	CACAGCGACTGGA	.	62	7	62	0	.	0	0	0	0	0	A	150531111	G	A	150531111	3	1	5	1	0	0	0	0	1	0	0	0	277	1058	37	1	2595	1	ADAMTSL4	1	150531111	Missense_Mutation	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10	32091546	150531111	98719510	29	473										
HRNR	388697	bcgsc.ca	37	chr1	152187474	152187474	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	gcgagactcatatgggccacGgctggaagaacgacctgagc	14	11	1	3	rs143987598	byfrequency	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	HRNR-93	NM_001009931	exon3	c.C6631T	p.R2211C	GGCCACGGCTGGA	.	533	61	388	1	G|0.999;A|0.001	0	0	0	0	0	A	152187474	G	A	152187474	3	1	5	1	0	0	0	0	1	0	0	0	7380	1116	39	1	1925	1	HRNR	1	152187474	Missense_Mutation	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10	1656363	152187474	97063147	30	474										
TPM3	7170	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	154141804	154141804	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	gaggtcatgtcattgagggcGtggtccagctcctcgctaat	13	10	2	1	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	TPM3-416	NM_152263	exon9	c.C831T	p.H277H	GAGGGCGTGGTCC	.	161	77	253	0	.	0	0	0	0	0	A	154141804	G	A	154141804	2	1	5	1	0	0	0	0	0	0	0	1	16445	1136	40	1		1	TPM3	1	154141804	Silent	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10	1954330	154141804	95108817	31	475										
ARHGEF11	9826	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	156908212	156908212	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	caaggagaaagttattacccGtagcctttgttccgccttcc	8	12	0	1	rs141649554		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	ARHGEF11-233	NM_198236	exon38	c.C4190T	p.T1397M	TTACCCGTAGCCT	.	125	110	166	0	G|1.000;A|0.000	0	0	0	0	0	A	156908212	G	A	156908212	3	1	5	1	0	0	0	0	1	0	0	0	896	1145	40	1	514	1	ARHGEF11	1	156908212	Missense_Mutation	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10	2766408	156908212	92342409	32	476										
ATP1A2	477	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	160100011	160100011	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	cagggcaaggagatcccgctCgacaaggagatgcaagatgc	14	10	0	3	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	ATP1A2-518	NM_000702	exon12	c.C1581T	p.L527L	CCCGCTCGACAAG	.	66	61	77	0	.	0	0	0	0	0	T	160100011	C	T	160100011	2	4	5	1	0	0	0	0	0	0	0	1	1130	871	31	1		1	ATP1A2	1	160100011	Silent	SNP	C	TCGA-OR-A5J5-01A-11D-A29I-10	3191799	160100011	89150610	33	477										
USP21	27005	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	161130593	161130593	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	tgttacgacctctgcctcccCggccaggtctgcctgatgaa	10	15	2	2	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	USP21-660	NM_001014443	exon3	c.C163T	p.R55W	CCTCCCCGGCCAG	.	63	57	58	0	.	6	0	6	0	0	T	161130593	C	T	161130593	3	4	5	1	0	0	0	0	1	0	0	0	17091	643	23	1	165	1	USP21	1	161130593	Missense_Mutation	SNP	C	TCGA-OR-A5J5-01A-11D-A29I-10	1030582	161130593	88120028	34	478										
DUSP27	92235	bcgsc.ca	37	chr1	167096395	167096395	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	cagcgctgatggggacacgaCgtcagtactgagcacccaga	13	12	1	3	rs76205550	byfrequency	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	DUSP27-71	NM_001080426	exon5	c.C2027T	p.T676M	ACACGACGTCAGT	.	238	8	189	1	C|0.984;T|0.016	0	0	0	0	0	T	167096395	C	T	167096395	3	4	5	1	0	0	0	0	1	0	0	0	4835	536	19	1	2045	1	DUSP27	1	167096395	Missense_Mutation	SNP	C	TCGA-OR-A5J5-01A-11D-A29I-10	5965802	167096395	82154226	35	479										
FAM5B	57795	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	177245455	177245455	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	aatgactgctggtgcaagtgCagccccaccttccctgaatg	10	13	0	2	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	FAM5B-28	NM_021165	exon6	c.C897T	p.C299C	CAAGTGCAGCCCC	.	396	175	427	0	.	0	0	0	0	0	T	177245455	C	T	177245455	2	4	5	1	0	0	0	0	0	0	0	1	5612	718	25	3		3	FAM5B	1	177245455	Silent	SNP	C	TCGA-OR-A5J5-01A-11D-A29I-10	10149060	177245455	72005166	36	480										
KIAA1614	57710	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr1	180914481	180914481	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	cgtgccctcagtgtggaggaCgtgggtgctcccagcctggc	16	13	1	0	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	KIAA1614-26	NM_020950	exon9	c.C3330T	p.D1110D	GGAGGACGTGGGT	.	48	43	8	0	.	0	0	0	0	0	T	180914481	C	T	180914481	2	4	5	1	0	0	0	0	0	0	0	1	8269	535	19	1		1	KIAA1614	1	180914481	Silent	SNP	C	TCGA-OR-A5J5-01A-11D-A29I-10	3669026	180914481	68336140	37	481										
ATP2B4	493	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	203682343	203682343	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	cctaagcttcgggtcctggcGcgatcttctcccactgacaa	9	15	2	1	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	ATP2B4-517	NM_001001396	exon14	c.G2262A	p.A754A	CCTGGCGCGATCT	.	119	41	200	1	.	5	5	0	0	0	A	203682343	G	A	203682343	2	1	5	1	0	0	0	0	0	0	0	1	1143	1074	38	1		1	ATP2B4	1	203682343	Silent	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10	22767862	203682343	45568278	38	482										
RASSF5	83593	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	206757996	206757996	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	gaagtttgcactttttaagcGgatacacaaggacggacaag	11	7	0	0	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	RASSF5-660	NM_182663	exon4	c.G968A	p.R323Q	TTAAGCGGATACA	.	142	124	207	0	.	2	0	2	0	0	A	206757996	G	A	206757996	3	1	5	1	0	0	0	0	1	0	0	0	13124	1116	39	1	1106	1	RASSF5	1	206757996	Missense_Mutation	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10	3075653	206757996	42492625	39	483										
CR2	1380	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	207642044	207642044	+	Frame_Shift_Del	DEL	C	C	-													0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	tcgggaaaatggagtgctgtCccccccacatgtgaaggtac					novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	CR2-232	NM_001006658	exon3	c.618delC	p.V206fs	TGCTGTCCCCCCC	.	61	57	98	0	.	0	0	0	0	0	-	207642044	C	-	207642044	7	5	5	1	0	1	0	1	0	0	0	0	3848	842	30	0	628	0	CR2	1	207642044	Frame_Shift_Del	DEL	C	TCGA-OR-A5J5-01A-11D-A29I-10	884048	207642044	41608577	40	484										
PLXNA2	5362	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	208390432	208390432	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	ccttgcagagccgcacgatgCgtgaggtgtagaagaggtct	15	9	1	4	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	PLXNA2-92	NM_025179	exon2	c.G836A	p.R279H	ACGATGCGTGAGG	.	92	81	107	1	.	0	0	0	0	0	T	208390432	C	T	208390432	3	4	5	1	0	0	0	0	1	0	0	0	12149	768	27	1	4972	1	PLXNA2	1	208390432	Missense_Mutation	SNP	C	TCGA-OR-A5J5-01A-11D-A29I-10	748388	208390432	40860189	41	485										
CAPN2	824	broad.mit.edu;bcgsc.ca	37	chr1	223947018	223947018	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	cagcaaaaacttcttcctgaCgaatcgcgccagggagcgct	10	13	1	1	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	CAPN2-523	NM_001748	exon12	c.C1364T	p.T455M	TCCTGACGAATCG	.	188	7	261	0	.	11	11	0	0	0	T	223947018	C	T	223947018	3	4	5	1	0	0	0	0	1	0	0	0	2633	536	19	1	1417	1	CAPN2	1	223947018	Missense_Mutation	SNP	C	TCGA-OR-A5J5-01A-11D-A29I-10	15556586	223947018	25303603	42	486										
RYR2	6262	broad.mit.edu;bcgsc.ca	37	chr1	237791320	237791320	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	ggcatcccttggtcagattcGgtccctgctgagtgtgagaa	13	10	1	3	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	RYR2-158	NM_001035	exon41	c.G6380A	p.R2127Q	AGATTCGGTCCCT	.	193	7	234	0	.	0	0	0	0	0	A	237791320	G	A	237791320	3	1	5	1	0	0	0	0	1	0	0	0	13804	1116	39	1	6542	1	RYR2	1	237791320	Missense_Mutation	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10	13844302	237791320	11459301	43	487										
RYR2	6262	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	237811912	237811912	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	ggcggctgcttctttagataCggtgagattggagcgatgga	16	6	1	2	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	RYR2-158	NM_001035	exon49	c.C7511T	p.T2504M	TAGATACGGTGAG	.	68	4	92	0	.	0	0	0	0	0	T	237811912	C	T	237811912	3	4	5	1	0	0	0	0	1	0	0	0	13804	550	19	1	7705	1	RYR2	1	237811912	Missense_Mutation	SNP	C	TCGA-OR-A5J5-01A-11D-A29I-10	20592	237811912	11438709	44	488										
TSSC1	7260	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	3196229	3196229	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	tggtcactgatgtcatcgtcGtctaccaagtggccgaaggg	13	10	3	1	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	TSSC1-90	NM_003310	exon8	c.C945T	p.D315D	ATCGTCGTCTACC	.	190	18	200	0	.	19	16	3	0	0	A	3196229	G	A	3196229	2	1	5	1	0	0	0	0	0	0	0	1	16704	1136	40	1		1	TSSC1	2	3196229	Silent	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10		3196229	240003144	45	489										
TRIM54	57159	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	27505759	27505759	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	gccgcaaatgtgccaacgacGtcttccaggtgggtgccagg	14	12	1	0	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	TRIM54-227	NM_187841	exon1	c.G160A	p.V54I	AACGACGTCTTCC	.	133	119	170	1	.	0	0	0	0	0	A	27505759	G	A	27505759	3	1	5	1	0	0	0	0	1	0	0	0	16566	1145	40	1	162	1	TRIM54	2	27505759	Missense_Mutation	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10	24309530	27505759	215693614	46	490										
FOSL2	2355	ucsc.edu;bcgsc.ca	37	chr2	28627094	28627094	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	tgatcacctccatgtccaacCcataccctcgctcgcacccc	4	21	1	1	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	FOSL2-712	NM_005253	exon2	c.C223A	p.P75T	TCCAACCCATACC	.	190	166	190	2	.	5	1	4	0	0	A	28627094	C	A	28627094	3	1	5	1	0	0	0	0	1	0	0	0	6007	623	22	3	229	3	FOSL2	2	28627094	Missense_Mutation	SNP	C	TCGA-OR-A5J5-01A-11D-A29I-10	1121335	28627094	214572279	47	491										
FOXN2	3344	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	48602109	48602109	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	tgcaaaaaaagaggagttacGgcaatgcatttcatcatccc	8	9	2	1	rs200645756		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	FOXN2-226	NM_002158	exon7	c.G823A	p.G275S	AGTTACGGCAATG	.	184	153	269	1	G|0.999;A|0.001	0	0	0	0	0	A	48602109	G	A	48602109	3	1	5	1	0	0	0	0	1	0	0	0	6039	1116	39	1	841	1	FOXN2	2	48602109	Missense_Mutation	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10	19975015	48602109	194597264	48	492										
FSHR	2492	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	49244660	49244660	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	ttgggaaggttctggaaggcCtcagggttgatgtagagcag	17	5	2	2	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	FSHR-527	NM_181446	exon4	c.G342T	p.E114D	GAAGGCCTCAGGG	.	99	87	166	0	.	0	0	0	0	0	A	49244660	C	A	49244660	3	1	5	1	0	0	0	0	1	0	0	0	6092	680	24	3	1773	3	FSHR	2	49244660	Missense_Mutation	SNP	C	TCGA-OR-A5J5-01A-11D-A29I-10	642551	49244660	193954713	49	493										
NRXN1	9378	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	50149257	50149257	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	ttctgtacttgtacatggcaTagaggaggataaggatgcac	12	6	1	1	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	NRXN1-92	NM_001135659	exon24	c.A4469T	p.Y1490F	ATGGCATAGAGGA	.	163	143	208	2	.	0	0	0	0	0	A	50149257	T	A	50149257	3	1	5	1	0	0	0	0	1	0	0	0	10694	1406	49	5	178	5	NRXN1	2	50149257	Missense_Mutation	SNP	T	TCGA-OR-A5J5-01A-11D-A29I-10	904597	50149257	193050116	50	494										
USP34	9736	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	61571010	61571010	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	aagatgttgttggaggtgagAtgtcagttccgcatgtgaat	14	4	1	3	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	USP34-579	NM_014709	exon16	c.T2440C	p.S814P	GGTGAGATGTCAG	.	232	201	278	0	.	0	0	0	0	0	G	61571010	A	G	61571010	3	3	5	1	0	0	0	0	1	0	0	0	17103	333	12	4	8460	4	USP34	2	61571010	Missense_Mutation	SNP	A	TCGA-OR-A5J5-01A-11D-A29I-10	11421753	61571010	181628363	51	495										
TET3	200424	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	74273495	74273495	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	gggactcacggcagctaagcGcctcaggggtgccggtcaat	15	12	3	0	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	.	NM_144993	exon1	c.G46A	p.A16T	CTAAGCGCCTCAG	.	90	17	98	0	.	0	0	0	0	0	A	74273495	G	A	74273495	3	1	5	1	0	0	0	0	1	0	0	0	15808	1087	38	1	48	1	TET3	2	74273495	Missense_Mutation	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10	12702485	74273495	168925878	52	496										
WDR54	84058	broad.mit.edu	37	chr2	74649393	74649393	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	cacgtattttggcgtggttcAtggaccaagcgcccagcttc	11	12	1	0	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	WDR54-90	NM_032118	exon2	c.A113G	p.H38R	TGGTTCATGGACC	.	225	7	104	0	.	9	9	0	0	0	G	74649393	A	G	74649393	3	3	5	1	0	0	0	0	1	0	0	0	17344	217	8	4	115	4	WDR54	2	74649393	Missense_Mutation	SNP	A	TCGA-OR-A5J5-01A-11D-A29I-10	375898	74649393	168549980	53	497										
GLI2	2736	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	121744055	121744055	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	ccgctggtggcctccagctgCgcaaacacatgaccaccatg	10	16	0	1	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	GLI2-954	NM_005270	exon12	c.C2158T	p.R720C	CAGCTGCGCAAAC	.	248	216	167	1	.	4	0	4	0	0	T	121744055	C	T	121744055	3	4	5	1	0	0	0	0	1	0	0	0	6458	768	27	1	2204	1	GLI2	2	121744055	Missense_Mutation	SNP	C	TCGA-OR-A5J5-01A-11D-A29I-10	47094662	121744055	121455318	54	498										
PROC	5624	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr2	128185950	128185950	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	caggagagtatgacctgcggCgctgggagaagtgggagctg	19	7	0	3	rs121918154		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	PROC-90	NM_000312	exon9	c.C814T	p.R272C	CTGCGGCGCTGGG	.	125	7	99	0	.	0	0	0	0	0	T	128185950	C	T	128185950	3	4	5	1	0	0	0	0	1	0	0	0	12577	768	27	1	844	1	PROC	2	128185950	Missense_Mutation	SNP	C	TCGA-OR-A5J5-01A-11D-A29I-10	6441895	128185950	115013423	55	499										
CCDC74B	91409	bcgsc.ca	37	chr2	130897620	130897620	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	gaaagctagcttcctccgggActgcctggggcctctggctc	13	14	1	0	rs76485676	byfrequency	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	CCDC74B-90	NM_207310	exon6	c.T926C	p.V309A	TCCGGGACTGCCT	.	50	41	70	2	A|0.879;G|0.121	167	0	167	0	0	G	130897620	A	G	130897620	3	3	5	1	0	0	0	0	1	0	0	0	2854	275	10	4	228	4	CCDC74B	2	130897620	Missense_Mutation	SNP	A	TCGA-OR-A5J5-01A-11D-A29I-10	2711670	130897620	112301753	56	500										
NR4A2	4929	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr2	157186454	157186454	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	aggactgctgtccggacaggGgcatttggtacaagcaaggt	15	8	0	0	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	NR4A2-189	NM_006186	exon3	c.C245T	p.P82L	GACAGGGGCATTT	.	234	15	309	0	.	0	0	0	0	0	A	157186454	G	A	157186454	3	1	5	1	0	0	0	0	1	0	0	0	10662	1232	43	3	1575	3	NR4A2	2	157186454	Missense_Mutation	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10	26288834	157186454	86012919	57	501										
ERMN	57471	broad.mit.edu;bcgsc.ca	37	chr2	158182171	158182171	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	tcatgatgtgcggttgaatcCgatctggagagagagcttta	13	6	2	4	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	ERMN-92	NM_001009959	exon2	c.G23A	p.R8Q	TGAATCCGATCTG	.	83	7	119	1	.	0	0	0	0	0	T	158182171	C	T	158182171	3	4	5	1	0	0	0	0	1	0	0	0	5248	652	23	1	882	1	ERMN	2	158182171	Missense_Mutation	SNP	C	TCGA-OR-A5J5-01A-11D-A29I-10	995717	158182171	85017202	58	502										
KCNH7	90134	broad.mit.edu;bcgsc.ca	37	chr2	163302907	163302907	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	taaacttgttgatgcgtggtGtctgcagtttgtattcaggt	12	5	2	1	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	KCNH7-95	NM_033272	exon7	c.C1175T	p.T392I	CGTGGTGTCTGCA	.	129	6	188	1	.	0	0	0	0	0	A	163302907	G	A	163302907	3	1	5	1	0	0	0	0	1	0	0	0	8058	1377	48	3	2521	3	KCNH7	2	163302907	Missense_Mutation	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10	5120736	163302907	79896466	59	503										
SCN3A	6328	broad.mit.edu;bcgsc.ca	37	chr2	165947568	165947568	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	aatttggaacaagcagatcaTgctgttgccaaaggtctcaa	9	8	2	1	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	SCN3A-141	NM_006922	exon28	c.A5095T	p.M1699L	AGATCATGCTGTT	.	278	8	418	0	.	0	0	0	0	0	A	165947568	T	A	165947568	3	1	5	1	0	0	0	0	1	0	0	0	13953	1464	51	5	911	5	SCN3A	2	165947568	Missense_Mutation	SNP	T	TCGA-OR-A5J5-01A-11D-A29I-10	2644661	165947568	77251805	60	504										
SCN7A	6332	broad.mit.edu	37	chr2	167298121	167298121	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	ttcataattcttaccaaacaGcttcatgccgaatgcagcag	6	11	3	0	rs181976611		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	SCN7A-67	NM_002976	exon14	c.C1942T	p.L648L	CAAACAGCTTCAT	.	234	4	288	0	G|0.999;A|0.001	0	0	0	0	0	A	167298121	G	A	167298121	2	1	5	1	0	0	0	0	0	0	0	1	13958	962	34	3		3	SCN7A	2	167298121	Silent	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10	1350553	167298121	75901252	61	505										
COL5A2	1290	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr2	189898939	189898939	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	cttgcccacatttccattccGcttctgaaattaaatgatgc	5	12	1	2	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	COL5A2-92	NM_000393	exon54	c.C4357T	p.R1453W	CATTCCGCTTCTG	.	77	12	91	0	.	0	0	0	0	0	A	189898939	G	A	189898939	3	1	5	1	0	0	0	0	1	0	0	0	3703	1086	38	1	146	1	COL5A2	2	189898939	Missense_Mutation	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10	22600818	189898939	53300434	62	506										
SDPR	8436	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	192700699	192700699	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	gggctgcacggggtccccatCggagcgctccgcctcctcgg	15	17	0	0	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	SDPR-92	NM_004657	exon2	c.G1228A	p.D410N	CCCCATCGGAGCG	.	53	46	31	0	.	2	2	0	0	0	T	192700699	C	T	192700699	3	4	5	1	0	0	0	0	1	0	0	0	14005	884	31	1	53	1	SDPR	2	192700699	Missense_Mutation	SNP	C	TCGA-OR-A5J5-01A-11D-A29I-10	2801760	192700699	50498674	63	507										
SPATS2L	26010	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	201342532	201342532	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	ttccggcccaaaaacaaaggCggtgccaaaaatcaagaggc	10	11	1	1	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	SPATS2L-48	NM_001100423	exon13	c.C1455T	p.G485G	CAAAGGCGGTGCC	.	47	21	80	0	.	7	5	2	0	0	T	201342532	C	T	201342532	2	4	5	1	0	0	0	0	0	0	0	1	15057	755	27	1		1	SPATS2L	2	201342532	Silent	SNP	C	TCGA-OR-A5J5-01A-11D-A29I-10	8641833	201342532	41856841	64	508										
MDH1B	130752	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	207615686	207615686	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	aatcaagtttaaaacagggcGtgaataatgaagaggtcccc	10	7	1	3	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	MDH1B-94	NM_001039845	exon6	c.C1024T	p.R342C	CAGGGCGTGAATA	.	28	16	66	0	.	0	0	0	0	0	A	207615686	G	A	207615686	3	1	5	1	0	0	0	0	1	0	0	0	9437	1145	40	1	560	1	MDH1B	2	207615686	Missense_Mutation	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10	6273154	207615686	35583687	65	509										
SMARCAL1	50485	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	217300105	217300105	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	ctgagcccagattgcatcaaCgtcgtggtgactgggaagga	14	9	1	3	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	SMARCAL1-293	NM_014140	exon9	c.C1530T	p.N510N	CATCAACGTCGTG	.	190	167	194	2	.	3	0	3	0	0	T	217300105	C	T	217300105	2	4	5	1	0	0	0	0	0	0	0	1	14808	535	19	1		1	SMARCAL1	2	217300105	Silent	SNP	C	TCGA-OR-A5J5-01A-11D-A29I-10	9684419	217300105	25899268	66	510										
PLCD4	84812	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	219498432	219498432	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	aaggagcactaccacttctaCgagatatcatctttctctga	6	11	4	2	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	PLCD4-661	NM_032726	exon11	c.C1554T	p.Y518Y	CTTCTACGAGATA	.	67	58	89	1	.	3	0	3	0	0	T	219498432	C	T	219498432	2	4	5	1	0	0	0	0	0	0	0	1	12062	547	19	1		1	PLCD4	2	219498432	Silent	SNP	C	TCGA-OR-A5J5-01A-11D-A29I-10	2198327	219498432	23700941	67	511										
SLC4A3	6508	bcgsc.ca	37	chr2	220505265	220505265	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	gtatccagctgtcccagcgtTtgttgctcatcctcatgccg	9	14	2	0	rs684428	byfrequency	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	SLC4A3-157	NM_201574	exon21	c.T3472C	p.L1158L	CAGCGTTTGTTGC	.	153	6	171	1	T|0.289;C|0.711	242	242	0	0	0	C	220505265	T	C	220505265	2	2	5	1	0	0	0	0	0	0	0	1	14690	1838	64	4		4	SLC4A3	2	220505265	Silent	SNP	T	TCGA-OR-A5J5-01A-11D-A29I-10	1006833	220505265	22694108	68	512										
SCG2	7857	ucsc.edu	37	chr2	224462285	224462285	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	gtatcatcattcttcgggggCcccacagggaaccttttgct	10	12	3	0	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	SCG2-69	NM_003469	exon2	c.G1716C	p.G572G	CGGGGGCCCCACA	.	15	1	30	0	.	20	16	4	0	0	G	224462285	C	G	224462285	2	3	5	1	0	0	0	0	0	0	0	1	13926	726	26	3		3	SCG2	2	224462285	Silent	SNP	C	TCGA-OR-A5J5-01A-11D-A29I-10	3957020	224462285	18737088	69	513										
AGFG1	3267	hgsc.bcm.edu;bcgsc.ca	37	chr2	228384741	228384744	+	Frame_Shift_Del	DEL	GAAA	GAAA	-													0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	ttcagggatccacaaaaagtGaaagagtttctacaagaaaa					novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	GAAA	GAAA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	AGFG1-228	NM_004504	exon3	c.339_342del	p.113_114del	AAAAGTGAAAGAG	.	102	91	180	2	.	0	0	0	0	0	-	228384744	GAAA	-	228384741	7	5	5	1	0	1	0	1	0	0	0	0	380	1277	45	0	349	0	AGFG1	2	228384741	Frame_Shift_Del	DEL	GAAA	TCGA-OR-A5J5-01A-11D-A29I-10	3922456	228384741	14814632	70	514										
KLHL30	377007	broad.mit.edu	37	chr2	239059485	239059485	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	agcacagcctgcatgagaatGgcgcgctggtgccactgggt	15	11	0	1	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	KLHL30-22	NM_198582	exon8	c.G1516A	p.G506S	GAGAATGGCGCGC	.	211	5	25	0	.	0	0	0	0	0	A	239059485	G	A	239059485	3	1	5	1	0	0	0	0	1	0	0	0	8405	1348	47	3	1542	3	KLHL30	2	239059485	Missense_Mutation	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10	10674744	239059485	4139888	71	515										
ANO7	50636	bcgsc.ca	37	chr2	242157228	242157228	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	gtctgcgagtaccggcgcccGgtggccgagcgcgcccagga	17	15	1	0	rs78605785	byfrequency	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	ANO7-92	NM_001001891	exon20	c.G2262C	p.P754P	GCGCCCGGTGGCC	.	115	115	7	0	C|0.028;G|0.842;T|0.130	0	0	0	0	0	C	242157228	G	C	242157228	2	2	5	1	0	0	0	0	0	0	0	1	702	1103	39	2		2	ANO7	2	242157228	Silent	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10	3097743	242157228	1042145	72	516										
GRIP2	80852	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	14552686	14552686	+	RNA	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	gccataccagagttgtcctcGtccttccggatcttcagctt	8	14	2	1	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	GRIP2-69	.	.	.	.	GTCCTCGTCCTTC	.	89	76	109	0	.	0	0	0	0	0	A	14552686	G	A	14552686	1	1	5	0	1	0	0	0	0	0	0	0	6809	1136	40	1		1	GRIP2	3	14552686	RNA	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10		14552686	183469744	73	517										
NR2C2	7182	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	15071882	15071882	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	gtggaggagggagcatccacGtcatcagcagagaccagtcg	15	10	2	1	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	NR2C2-226	NM_003298	exon10	c.G1090A	p.V364I	ATCCACGTCATCA	.	183	164	207	0	.	5	2	3	0	0	A	15071882	G	A	15071882	3	1	5	1	0	0	0	0	1	0	0	0	10652	1145	40	1	1124	1	NR2C2	3	15071882	Missense_Mutation	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10	519196	15071882	182950548	74	518										
CTDSPL	10217	bcgsc.ca	37	chr3	38017252	38017252	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	ctggggtgtgttccgggcccGgctcttcagagaatcatgtg	15	10	3	1	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	CTDSPL-90	NM_001008392	exon7	c.G572A	p.R191Q	GGGCCCGGCTCTT	.	49	27	75	3	.	2	0	2	0	0	A	38017252	G	A	38017252	3	1	5	1	0	0	0	0	1	0	0	0	4011	1116	39	1	598	1	CTDSPL	3	38017252	Missense_Mutation	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10	22945370	38017252	160005178	75	519										
TTC21A	199223	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	39180220	39180220	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	aggtcctcagggagcaccccGactaccccaagatcagggag	12	14	2	1	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	TTC21A-91	NM_145755	exon29	c.G3904A	p.D1302N	CACCCCGACTACC	.	106	93	146	1	.	7	0	7	0	0	A	39180220	G	A	39180220	3	1	5	1	0	0	0	0	1	0	0	0	16725	1058	37	1	4021	1	TTC21A	3	39180220	Missense_Mutation	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10	1162968	39180220	158842210	76	520										
NKTR	4820	bcgsc.ca	37	chr3	42660604	42660604	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	aaaactttatgattcagggtGgggacttcagtgaaggtaga	13	4	2	3	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	NKTR-93	NM_005385	exon4	c.G226T	p.G76W	CAGGGTGGGGACT	.	67	4	106	0	.	0	0	0	0	0	T	42660604	G	T	42660604	3	4	5	1	0	0	0	0	1	0	0	0	10477	1348	47	3	236	3	NKTR	3	42660604	Missense_Mutation	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10	3480384	42660604	155361826	77	521										
CCDC13	152206	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	42771959	42771959	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	ccctgggtgccatgtgttacCgtttctgcaggacagtgaca	12	11	1	1	rs141485184	by1000genomes;alternate_allele	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	CCDC13-91	NM_144719	exon13	c.G1718A	p.R573Q	TGTTACCGTTTCT	.	131	115	181	0	C|0.999;G|0.000	0	0	0	0	0	T	42771959	C	T	42771959	3	4	5	1	0	0	0	0	1	0	0	0	2771	666	23	1	445	1	CCDC13	3	42771959	Missense_Mutation	SNP	C	TCGA-OR-A5J5-01A-11D-A29I-10	111355	42771959	155250471	78	522										
NBEAL2	23218	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr3	47036641	47036641	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	gagctgcggctcttcctagcGcaacgcctcaggtggctctg	13	14	3	0	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	NBEAL2-69	NM_015175	exon13	c.G1416A	p.A472A	CCTAGCGCAACGC	.	109	99	8	0	.	2	1	1	0	0	A	47036641	G	A	47036641	2	1	5	1	0	0	0	0	0	0	0	1	10217	1074	38	1		1	NBEAL2	3	47036641	Silent	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10	4264682	47036641	150985789	79	523										
KIF9	64147	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	47312930	47312930	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	agtgatggcatgtgtggggcGttcttcgatcatcctaaaaa	12	7	2	1	rs201201745		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	KIF9-91	NM_182902	exon5	c.C388T	p.R130C	TGGGGCGTTCTTC	.	80	8	126	0	G|1.000;A|0.000	0	0	0	0	0	A	47312930	G	A	47312930	3	1	5	1	0	0	0	0	1	0	0	0	8331	1145	40	1	2052	1	KIF9	3	47312930	Missense_Mutation	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10	276289	47312930	150709500	80	524										
SCAP	22937	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	47465429	47465429	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	tcccactgcgttaccttgggCgatccgcagcttcacctcca	8	17	1	0	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	SCAP-91	NM_012235	exon9	c.G1144A	p.A382T	CTTGGGCGATCCG	.	88	75	116	0	.	0	0	0	0	0	T	47465429	C	T	47465429	3	4	5	1	0	0	0	0	1	0	0	0	13912	768	27	1	2755	1	SCAP	3	47465429	Missense_Mutation	SNP	C	TCGA-OR-A5J5-01A-11D-A29I-10	152499	47465429	150557001	81	525										
BSN	8927	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	49694175	49694175	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	ggctgcaagaggagctagagCgggaacgtgtggagctgcag	19	7	0	2	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	BSN-97	NM_003458	exon5	c.C7186T	p.R2396W	CTAGAGCGGGAAC	.	337	123	250	0	.	0	0	0	0	0	T	49694175	C	T	49694175	3	4	5	1	0	0	0	0	1	0	0	0	1533	759	27	1	7204	1	BSN	3	49694175	Missense_Mutation	SNP	C	TCGA-OR-A5J5-01A-11D-A29I-10	2228746	49694175	148328255	82	526										
SEMA3G	56920	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	52475300	52475300	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	cacgcagacgcggcccacgcGgctgacagtgacatggttcg	14	14	0	3	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	SEMA3G-70	NM_020163	exon7	c.C793T	p.R265C	CCACGCGGCTGAC	.	160	152	123	1	.	0	0	0	0	0	A	52475300	G	A	52475300	3	1	5	1	0	0	0	0	1	0	0	0	14065	1116	39	1	1595	1	SEMA3G	3	52475300	Missense_Mutation	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10	2781125	52475300	145547130	83	527										
GNL3	26354	bcgsc.ca	37	chr3	52727736	52727736	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	gaagaaaaggacatacatgaAgaattgccaaaacggaaaga	10	5	0	4	rs4532127	byfrequency	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	GNL3-90	NM_014366	exon13	c.A1413G	p.E471E	ACATGAAGAATTG	.	253	8	313	3	A|0.878;G|0.122	45	45	0	0	0	G	52727736	A	G	52727736	2	3	5	1	0	0	0	0	0	0	0	1	6557	69	3	4		4	GNL3	3	52727736	Silent	SNP	A	TCGA-OR-A5J5-01A-11D-A29I-10	252436	52727736	145294694	84	528										
MAGI1	9223	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	65365023	65365023	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	cccgcgccggatctccacgtCgtagggctgcaccacggtgc	13	17	1	0	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	MAGI1-661	NM_015520	exon18	c.G2992A	p.D998N	CCACGTCGTAGGG	.	74	73	32	0	.	3	1	2	0	0	T	65365023	C	T	65365023	3	4	5	1	0	0	0	0	1	0	0	0	9218	884	31	1	1654	1	MAGI1	3	65365023	Missense_Mutation	SNP	C	TCGA-OR-A5J5-01A-11D-A29I-10	12637287	65365023	132657407	85	529										
FILIP1L	11259	hgsc.bcm.edu;bcgsc.ca	37	chr3	99567122	99567123	+	Frame_Shift_Ins	INS	-	-	TA													0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	tgagggtgagcgtggtcagtINStatatatattacttactgta					novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	FILIP1L-45	NM_001042459	exon5	c.3398_3399insTA	p.N1133fs	GGTCAGTTATATA	.	165	143	260	2	.	0	0	0	0	0	TA	99567123	-	TA	99567122	7	5	5	1	0	1	1	0	0	0	0	0	5914	1725	60	0	38	0	FILIP1L	3	99567122	Frame_Shift_Ins	INS	-	TCGA-OR-A5J5-01A-11D-A29I-10	34202099	99567122	98455308	86	530										
PLCXD2	257068	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	111432936	111432936	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	cagagtgaagaccattgcccGgggcttggttgggggcctca	16	10	1	3	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	PLCXD2-227	NM_001185106	exon3	c.G827A	p.R276Q	TTGCCCGGGGCTT	.	33	33	18	0	.	0	0	0	0	0	A	111432936	G	A	111432936	3	1	5	1	0	0	0	0	1	0	0	0	12071	1116	39	1	837	1	PLCXD2	3	111432936	Missense_Mutation	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10	11865814	111432936	86589494	87	531										
TAGLN3	29114	broad.mit.edu	37	chr3	111718285	111718285	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	cagagatggctaacaggggcCcgagctatggcttaagccga	14	10	0	1	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	TAGLN3-90	NM_001008272	exon2	c.C16T	p.P6S	AGGGGCCCGAGCT	.	59	17	78	2	.	0	0	0	0	0	T	111718285	C	T	111718285	3	4	5	1	0	0	0	0	1	0	0	0	15577	623	22	3	18	3	TAGLN3	3	111718285	Missense_Mutation	SNP	C	TCGA-OR-A5J5-01A-11D-A29I-10	285349	111718285	86304145	88	532										
FBXO40	51725	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	121341510	121341510	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	aaagagaactcaaaggccacGtcatctctgaatccagaagc	8	11	3	3	rs143415272		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	FBXO40-273	NM_016298	exon3	c.G1234A	p.V412I	GGCCACGTCATCT	.	103	83	129	0	G|1.000;A|0.000	0	0	0	0	0	A	121341510	G	A	121341510	3	1	5	1	0	0	0	0	1	0	0	0	5768	1145	40	1	1240	1	FBXO40	3	121341510	Missense_Mutation	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10	9623225	121341510	76680920	89	533										
TMCC1	23023	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	129370538	129370538	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	tgagtttgcccagaaggttcCgggcagtggcattctccagc	13	11	1	2	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	TMCC1-91	NM_001017395	exon6	c.G1748A	p.R583Q	AGGTTCCGGGCAG	.	149	134	161	0	.	2	0	2	0	0	T	129370538	C	T	129370538	3	4	5	1	0	0	0	0	1	0	0	0	16029	652	23	1	217	1	TMCC1	3	129370538	Missense_Mutation	SNP	C	TCGA-OR-A5J5-01A-11D-A29I-10	8029028	129370538	68651892	90	534										
NPHP3	27031	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	132407633	132407633	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	gccaaacttcttccactgcaCgtatacacttgctagttggt	7	12	1	0	rs150867534		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	NPHP3-91	NM_153240	exon21	c.G2986A	p.V996M	ACTGCACGTATAC	.	87	10	79	0	C|0.999;T|0.000	4	4	0	0	0	T	132407633	C	T	132407633	3	4	5	1	0	0	0	0	1	0	0	0	10609	536	19	1	1034	1	NPHP3	3	132407633	Missense_Mutation	SNP	C	TCGA-OR-A5J5-01A-11D-A29I-10	3037095	132407633	65614797	91	535										
KY	339855	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	134322975	134322975	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	gaagctgatggagcagcgccCgtcgctggtgtggatgatag	17	8	0	2	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	KY-24	NM_178554	exon11	c.G1432A	p.G478R	AGCGCCCGTCGCT	.	65	7	72	0	.	0	0	0	0	0	T	134322975	C	T	134322975	3	4	5	1	0	0	0	0	1	0	0	0	8608	652	23	1	557	1	KY	3	134322975	Missense_Mutation	SNP	C	TCGA-OR-A5J5-01A-11D-A29I-10	1915342	134322975	63699455	92	536										
IL20RB	53833	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	136701009	136701009	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	ctctctttgacagggagtacGagagcctgtacacgagccac	11	12	1	2	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	IL20RB-91	NM_144717	exon3	c.G223A	p.E75K	GAGTACGAGAGCC	.	140	47	188	0	.	0	0	0	0	0	A	136701009	G	A	136701009	3	1	5	1	0	0	0	0	1	0	0	0	7690	1059	37	1	233	1	IL20RB	3	136701009	Missense_Mutation	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10	2378034	136701009	61321421	93	537										
SLC9A9	285195	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	142987727	142987727	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	atttacttaccccataggctTgaggactggtaagcagcctg	10	10	0	1	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	SLC9A9-229	NM_173653	exon15	c.A1700G	p.Q567R	TAGGCTTGAGGAC	.	172	73	233	0	.	0	0	0	0	0	C	142987727	T	C	142987727	3	2	5	1	0	0	0	0	1	0	0	0	14756	1812	63	4	245	4	SLC9A9	3	142987727	Missense_Mutation	SNP	T	TCGA-OR-A5J5-01A-11D-A29I-10	6286718	142987727	55034703	94	538										
IGSF10	285313	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	151164728	151164728	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	gcccccttccgccaattttcCtctgcctcccaaagcgtctg	6	19	2	0	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	IGSF10-102	NM_178822	exon4	c.G3041T	p.R1014M	ATTTTCCTCTGCC	.	72	62	112	0	.	0	0	0	0	0	A	151164728	C	A	151164728	3	1	5	1	0	0	0	0	1	0	0	0	7618	681	24	3	4890	3	IGSF10	3	151164728	Missense_Mutation	SNP	C	TCGA-OR-A5J5-01A-11D-A29I-10	8177001	151164728	46857702	95	539										
SLITRK3	22865	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	164907802	164907802	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	ttctgtcttcctgatttctcGtaggtcctttccatggaagt	8	10	3	1	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	SLITRK3-100	NM_014926	exon2	c.C817T	p.R273X	TTTCTCGTAGGTC	.	55	50	91	0	.	0	0	0	0	0	A	164907802	G	A	164907802	4	1	5	1	0	0	0	0	0	1	0	0	14779	1153	40	1	2120	1	SLITRK3	3	164907802	Nonsense_Mutation	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10	13743074	164907802	33114628	96	540										
MYNN	55892	broad.mit.edu;bcgsc.ca	37	chr3	169500336	169500336	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	cacactgacctatcatgtccGtaggcatactggagaaaagc	9	11	1	2	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	MYNN-91	NM_001185118	exon6	c.G1304A	p.R435H	ATGTCCGTAGGCA	.	180	7	126	0	.	3	3	0	0	0	A	169500336	G	A	169500336	3	1	5	1	0	0	0	0	1	0	0	0	10089	1145	40	1	1318	1	MYNN	3	169500336	Missense_Mutation	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10	4592534	169500336	28522094	97	541										
DCUN1D1	54165	bcgsc.ca	37	chr3	182681740	182681740	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	gttgctgctctgaacttccaCgcaataatcaacacactaat	5	12	2	1	rs4859146	byfrequency	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	DCUN1D1-91	NM_020640	exon3	c.G318A	p.A106A	CTTCCACGCAATA	.	112	6	174	1	C|0.308;T|0.692	5	5	0	0	0	T	182681740	C	T	182681740	2	4	5	1	0	0	0	0	0	0	0	1	4319	523	19	1		1	DCUN1D1	3	182681740	Silent	SNP	C	TCGA-OR-A5J5-01A-11D-A29I-10	13181404	182681740	15340690	98	542										
CHRD	8646	broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr3	184100913	184100913	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	ggcaggcaggccagggctgcGcatcagtggacacattgctg	16	11	1	0	rs201032668		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	CHRD-93	NM_003741	exon10	c.G1175A	p.R392H	GGCTGCGCATCAG	.	74	31	39	1	G|0.999;A|0.000	1	1	0	0	0	A	184100913	G	A	184100913	3	1	5	1	0	0	0	0	1	0	0	0	3378	1087	38	1	1213	1	CHRD	3	184100913	Missense_Mutation	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10	1419173	184100913	13921517	99	543										
ETV5	2119	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	185766567	185766567	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	cggactctgccttcaggaacGgacgctggttatccgggaaa	13	11	2	0	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	ETV5-706	NM_004454	exon13	c.C1394T	p.P465L	AGGAACGGACGCT	.	194	171	232	0	.	4	1	3	0	0	A	185766567	G	A	185766567	3	1	5	1	0	0	0	0	1	0	0	0	5295	1116	39	1	142	1	ETV5	3	185766567	Missense_Mutation	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10	1665654	185766567	12255863	100	544										
MFSD10	10227	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	2933798	2933798	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	cagagggtgggtcctggccaCgagcgacagccgagaagcgc	17	12	0	2	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	MFSD10-68	NM_001120	exon6	c.G776A	p.R259H	TGGCCACGAGCGA	.	133	20	20	0	.	47	37	10	0	0	T	2933798	C	T	2933798	3	4	5	1	0	0	0	0	1	0	0	0	9556	536	19	1	619	1	MFSD10	4	2933798	Missense_Mutation	SNP	C	TCGA-OR-A5J5-01A-11D-A29I-10		2933798	188220478	101	545										
ADRA2C	152	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	3768709	3768709	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	tcgggcaggtgtggtgcggcGtgtacctggcgctcgatgtg	19	9	0	0	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	ADRA2C-522	NM_000683	exon1	c.G376A	p.V126M	TGCGGCGTGTACC	.	178	45	25	0	.	3	3	0	0	0	A	3768709	G	A	3768709	3	1	5	1	0	0	0	0	1	0	0	0	339	1145	40	1	378	1	ADRA2C	4	3768709	Missense_Mutation	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10	834911	3768709	187385567	102	546										
CRMP1	1400	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr4	5844857	5844857	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	gggcatggccctcgggacccGtgatgcccatctccaggatc	13	15	1	1	rs142255876		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	CRMP1-92	NM_001014809	exon7	c.C995T	p.T332M	GGACCCGTGATGC	.	359	31	216	0	G|1.000;A|0.000	6	5	1	0	0	A	5844857	G	A	5844857	3	1	5	1	0	0	0	0	1	0	0	0	3896	1145	40	1	1097	1	CRMP1	4	5844857	Missense_Mutation	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10	2076148	5844857	185309419	103	547										
SORCS2	57537	broad.mit.edu	37	chr4	7716056	7716056	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	gggaggagcttcacgtcggcGctcacgtcccgcgtgtgcga	16	13	2	0	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	SORCS2-91	NM_020777	exon16	c.G2079A	p.A693A	GTCGGCGCTCACG	.	276	13	75	1	.	0	0	0	0	0	A	7716056	G	A	7716056	2	1	5	1	0	0	0	0	0	0	0	1	14966	1074	38	1		1	SORCS2	4	7716056	Silent	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10	1871199	7716056	183438220	104	548										
SORCS2	57537	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	7738821	7738821	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	ggccaggcaggaccgtgtacGcccaaatgcacaacgagaag	13	12	0	1	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	SORCS2-91	NM_020777	exon26	c.G3337A	p.A1113T	GTGTACGCCCAAA	.	273	110	125	0	.	3	3	0	0	0	A	7738821	G	A	7738821	3	1	5	1	0	0	0	0	1	0	0	0	14966	1087	38	1	3439	1	SORCS2	4	7738821	Missense_Mutation	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10	22765	7738821	183415455	105	549										
WDR1	9948	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	10086077	10086077	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	caaaggatattaatgtgtccGtcgtggctcccagagtaaat	10	8	0	1	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	WDR1-48	NM_017491	exon9	c.C1029T	p.D343D	GTGTCCGTCGTGG	.	324	54	220	0	.	0	0	0	0	0	A	10086077	G	A	10086077	2	1	5	1	0	0	0	0	0	0	0	1	17310	1136	40	1		1	WDR1	4	10086077	Silent	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10	2347256	10086077	181068199	106	550										
SLIT2	9353	broad.mit.edu;bcgsc.ca	37	chr4	20469421	20469421	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	caatcccaaggaaagctttcCgtggggcagttgacataaaa	10	9	0	1	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	SLIT2-521	NM_004787	exon5	c.C442T	p.R148C	GCTTTCCGTGGGG	.	169	8	168	0	.	0	0	0	0	0	T	20469421	C	T	20469421	3	4	5	1	0	0	0	0	1	0	0	0	14775	652	23	1	460	1	SLIT2	4	20469421	Missense_Mutation	SNP	C	TCGA-OR-A5J5-01A-11D-A29I-10	10383344	20469421	170684855	107	551										
PPARGC1A	10891	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	23803958	23803958	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	ttttaccgacataaatcacaCggcgctcttcctatgggggg	10	11	2	0	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	PPARGC1A-230	NM_013261	exon11	c.G2030A	p.R677H	ATCACACGGCGCT	.	177	77	109	1	.	0	0	0	0	0	T	23803958	C	T	23803958	3	4	5	1	0	0	0	0	1	0	0	0	12329	536	19	1	378	1	PPARGC1A	4	23803958	Missense_Mutation	SNP	C	TCGA-OR-A5J5-01A-11D-A29I-10	3334537	23803958	167350318	108	552										
CCDC149	91050	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	24821571	24821571	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	tccactaggaagagtggggtCgctgaacagtatggtgtcct	14	8	0	2	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	CCDC149-68	NM_173463	exon12	c.G1069A	p.D357N	TGGGGTCGCTGAA	.	253	113	150	0	.	17	4	13	0	0	T	24821571	C	T	24821571	3	4	5	1	0	0	0	0	1	0	0	0	2789	884	31	1	528	1	CCDC149	4	24821571	Missense_Mutation	SNP	C	TCGA-OR-A5J5-01A-11D-A29I-10	1017613	24821571	166332705	109	553										
FRYL	285527	hgsc.bcm.edu;bcgsc.ca	37	chr4	48555392	48555394	+	In_Frame_Del	DEL	CTT	CTT	-													0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	ctacctaaatatacaatgacCttcttcacctgtcacaaaag					novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	CTT	CTT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	FRYL-69	NM_015030	exon36	c.4273_4275del	p.1425_1425del	AATGACCTTCTTC	.	100	30	85	0	.	0	0	0	0	0	-	48555394	CTT	-	48555392	7	5	5	1	0	1	0	1	0	0	0	0	6083	680	24	0	4882	0	FRYL	4	48555392	In_Frame_Del	DEL	CTT	TCGA-OR-A5J5-01A-11D-A29I-10	23733821	48555392	142598884	110	554										
KDR	3791	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	55973911	55973911	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	tggccttactcacctgggctCgttggcgcactcttcctcca	9	16	2	0	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	KDR-2298	NM_002253	exon10	c.G1405A	p.E469K	TGGGCTCGTTGGC	.	282	147	190	0	.	0	0	0	0	0	T	55973911	C	T	55973911	3	4	5	1	0	0	0	0	1	0	0	0	8160	893	31	1	2749	1	KDR	4	55973911	Missense_Mutation	SNP	C	TCGA-OR-A5J5-01A-11D-A29I-10	7418519	55973911	135180365	111	555										
AMTN	401138	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr4	71394929	71394930	+	Splice_Site	INS	-	-	A													0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	ctaagctcagaggaattggtINSaaaaaaaataaaaatactat					novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	AMTN-153	NM_212557	exon7	c.357+2->A	.	AATTGGTAAAAAA	.	194	63	180	0	.	0	0	0	0	0	A	71394930	-	A	71394929	8	5	5	1	0	1	1	0	0	0	1	0	590	1652	57	0	381	0	AMTN	4	71394929	Splice_Site	INS	-	TCGA-OR-A5J5-01A-11D-A29I-10	15421018	71394929	119759347	112	556										
HNRPDL	9987	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	83347682	83347682	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	atacccagtataatcatatcCgccatagccactatagtttt	4	11	1	0	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	HNRPDL-91	NM_031372	exon6	c.G1126A	p.G376R	CATATCCGCCATA	.	156	70	116	0	.	119	79	39	1	0	T	83347682	C	T	83347682	3	4	5	1	0	0	0	0	1	0	0	0	7297	661	23	1	144	1	HNRPDL	4	83347682	Missense_Mutation	SNP	C	TCGA-OR-A5J5-01A-11D-A29I-10	11952753	83347682	107806594	113	557										
PKD2	5311	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	88996108	88996108	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	aggctgttggatggggtggcCgaggtcagtagtcatgagct	18	6	2	1	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	PKD2-91	NM_000297	exon14	c.C2667T	p.A889A	GGTGGCCGAGGTC	.	295	78	231	0	.	0	0	0	0	0	T	88996108	C	T	88996108	2	4	5	1	0	0	0	0	0	0	0	1	11995	639	23	1		1	PKD2	4	88996108	Silent	SNP	C	TCGA-OR-A5J5-01A-11D-A29I-10	5648426	88996108	102158168	114	558										
FAM13A	10144	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	89670963	89670963	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	gaatctatcttcaaacttccGgatcttctttttaaggctct	5	10	6	0	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	FAM13A-70	NM_014883	exon16	c.C2038T	p.R680W	ACTTCCGGATCTT	.	133	37	68	2	.	3	3	0	0	0	A	89670963	G	A	89670963	3	1	5	1	0	0	0	0	1	0	0	0	5468	1115	39	1	1069	1	FAM13A	4	89670963	Missense_Mutation	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10	674855	89670963	101483313	115	559										
LARP7	51574	hgsc.bcm.edu	37	chr4	113578482	113578483	+	Frame_Shift_Ins	INS	-	-	A													0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	agattttctgaatatgattgINSaaaaaaaaaacagttcacct					novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	LARP7-93	NM_001267039	exon15	c.1769_1770insA	p.X590delinsX	ATGATTGAAAAAA	.	215	48	160	0	.	0	0	0	0	0	A	113578483	-	A	113578482	7	5	5	1	0	1	1	0	0	0	0	0	8655	1285	45	0	1794	0	LARP7	4	113578482	Frame_Shift_Ins	INS	-	TCGA-OR-A5J5-01A-11D-A29I-10	23907519	113578482	77575794	116	560										
PCDH18	54510	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	138442414	138442414	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	gtgggattttgaaaatgcgtActggctgcccatgccgctac	12	10	0	1	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	PCDH18-185	NM_019035	exon4	c.T3177C	p.S1059S	ATGCGTACTGGCT	.	267	104	170	0	.	11	5	6	0	0	G	138442414	A	G	138442414	2	3	5	1	0	0	0	0	0	0	0	1	11542	388	14	4		4	PCDH18	4	138442414	Silent	SNP	A	TCGA-OR-A5J5-01A-11D-A29I-10	24863932	138442414	52711862	117	561										
MAP9	79884	broad.mit.edu	37	chr4	156273869	156273869	+	Frame_Shift_Del	DEL	T	T	-													0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	tttgcttgaaaaaagcttccTttttttcattcctatagagc					novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	MAP9-91	NM_001039580	exon13	c.1700delA	p.K567fs	GCTTCCTTTTTTT	.	15	6	8	0	.	0	0	0	0	0	-	156273869	T	-	156273869	7	5	5	1	0	1	0	1	0	0	0	0	9298	1609	56	0	251	0	MAP9	4	156273869	Frame_Shift_Del	DEL	T	TCGA-OR-A5J5-01A-11D-A29I-10	17831455	156273869	34880407	118	562										
GUCY1B3	2983	broad.mit.edu;bcgsc.ca	37	chr4	156680986	156680986	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	ttgctggtgatccgcaattaCggccccgaggtgtgggaaga	15	9	0	2	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	.	NM_000857	exon2	c.C51T	p.Y17Y	CAATTACGGCCCC	.	241	121	127	1	.	0	0	0	0	0	T	156680986	C	T	156680986	2	4	5	1	0	0	0	0	0	0	0	1	6916	547	19	1		1	GUCY1B3	4	156680986	Silent	SNP	C	TCGA-OR-A5J5-01A-11D-A29I-10	407117	156680986	34473290	119	563										
CLPTM1L	81037	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	1339097	1339097	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	ggctcatccagggcactcgtCggcttcttctccgcctcgat	10	16	3	0	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	CLPTM1L-153	NM_030782	exon4	c.G477A	p.P159P	ACTCGTCGGCTTC	.	322	160	133	0	.	1	1	0	0	0	T	1339097	C	T	1339097	2	4	5	1	0	0	0	0	0	0	0	1	3561	871	31	1		1	CLPTM1L	5	1339097	Silent	SNP	C	TCGA-OR-A5J5-01A-11D-A29I-10		1339097	179576163	120	564										
ADAMTS16	170690	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	5146290	5146290	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	ttgaccacaggggcgattacGtgtcccatgaaatcatgcac	10	11	1	2	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	ADAMTS16-275	NM_139056	exon3	c.G223A	p.V75M	GATTACGTGTCCC	.	221	80	150	1	.	0	0	0	0	0	A	5146290	G	A	5146290	3	1	5	1	0	0	0	0	1	0	0	0	261	1145	40	1	233	1	ADAMTS16	5	5146290	Missense_Mutation	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10	3807193	5146290	175768970	121	565										
TRIO	7204	hgsc.bcm.edu	37	chr5	14488142	14488142	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	ccagcgcggtcccttctctcGgcaaggagcccttccccccc	9	21	1	0	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	TRIO-562	NM_007118	exon48	c.G7405A	p.G2469S	TCTCTCGGCAAGG	.	22	7	2	0	.	8	3	5	0	0	A	14488142	G	A	14488142	3	1	5	1	0	0	0	0	1	0	0	0	16590	1116	39	1	7595	1	TRIO	5	14488142	Missense_Mutation	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10	9341852	14488142	166427118	122	566										
MYO10	4651	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	16701081	16701081	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	caggtacttaccgaggactgCgccccctcagagctgaaccg	11	15	1	2	rs150139256	by1000genomes	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	MYO10-3	NM_012334	exon25	c.G3423A	p.A1141A	GGACTGCGCCCCC	.	278	124	129	2	C|0.999;T|0.000	1	0	1	0	0	T	16701081	C	T	16701081	2	4	5	1	0	0	0	0	0	0	0	1	10090	755	27	1		1	MYO10	5	16701081	Silent	SNP	C	TCGA-OR-A5J5-01A-11D-A29I-10	2212939	16701081	164214179	123	567										
C1QTNF3	114899	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	34043081	34043081	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	actttctccctcctggagccGctacggccagtctgctggtg	11	15	2	0	rs143587337		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	C1QTNF3-90	NM_181435	exon1	c.C150T	p.S50S	GGAGCCGCTACGG	.	167	85	98	0	G|1.000;A|0.000	0	0	0	0	0	A	34043081	G	A	34043081	2	1	5	1	0	0	0	0	0	0	0	1	1970	1078	38	1		1	C1QTNF3	5	34043081	Silent	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10	17342000	34043081	146872179	124	568										
SLC38A9	153129	broad.mit.edu	37	chr5	54941671	54941671	+	Frame_Shift_Del	DEL	A	A	-													0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	gtgatgatacaattatgaatAaaaaaagcaagggtaagcac					novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	SLC38A9-68	NM_173514	exon12	c.1113delT	p.F371fs	ATGAATAAAAAAA	.	35	9	34	0	.	0	0	0	0	0	-	54941671	A	-	54941671	7	5	5	1	0	1	0	1	0	0	0	0	14646	359	13	0	592	0	SLC38A9	5	54941671	Frame_Shift_Del	DEL	A	TCGA-OR-A5J5-01A-11D-A29I-10	20898590	54941671	125973589	125	569										
MAP3K1	4214	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	56189493	56189493	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	tactgaagcatccagtctttCgtactacatggtagccaatt	7	10	1	1	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	MAP3K1-956	NM_005921	exon20	c.C4525T	p.R1509C	GTCTTTCGTACTA	.	233	111	186	0	.	2	1	1	0	0	T	56189493	C	T	56189493	3	4	5	1	0	0	0	0	1	0	0	0	9271	884	31	1	4603	1	MAP3K1	5	56189493	Missense_Mutation	SNP	C	TCGA-OR-A5J5-01A-11D-A29I-10	1247822	56189493	124725767	126	570										
ELOVL7	79993	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	60062450	60062450	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	agtaataaagccagcaggtaCgtgccatctgcagaagcaca	10	10	1	1	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	ELOVL7-90	NM_001104558	exon5	c.G344A	p.R115H	CAGGTACGTGCCA	.	240	103	221	1	.	0	0	0	0	0	T	60062450	C	T	60062450	3	4	5	1	0	0	0	0	1	0	0	0	5092	536	19	1	517	1	ELOVL7	5	60062450	Missense_Mutation	SNP	C	TCGA-OR-A5J5-01A-11D-A29I-10	3872957	60062450	120852810	127	571										
ELOVL7	79993	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	60067887	60067887	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	ggatggtttgtggcagaggcGaggacatgaggagccaatct	17	6	1	2	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	ELOVL7-90	NM_001104558	exon3	c.C98T	p.S33L	AGAGGCGAGGACA	.	262	56	162	0	.	2	2	0	0	0	A	60067887	G	A	60067887	3	1	5	1	0	0	0	0	1	0	0	0	5092	1059	37	1	771	1	ELOVL7	5	60067887	Missense_Mutation	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10	5437	60067887	120847373	128	572										
NLN	57486	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	65118697	65118697	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	caatttcttgaaacgtgagcCaaaccaaaaagcgttcctaa	6	10	1	2	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	NLN-90	NM_020726	exon13	c.C2069A	p.P690Q	GTGAGCCAAACCA	.	168	41	108	0	.	1	1	0	0	0	A	65118697	C	A	65118697	3	1	5	1	0	0	0	0	1	0	0	0	10496	594	21	3	2119	3	NLN	5	65118697	Missense_Mutation	SNP	C	TCGA-OR-A5J5-01A-11D-A29I-10	5050810	65118697	115796563	129	573										
GFM2	84340	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	74028894	74028894	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	tttcaaactgggatcttcacGctgaagacatttcaacgcat	7	10	4	2	rs139234343		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	GFM2-90	NM_032380	exon16	c.C1540T	p.R514C	CTTCACGCTGAAG	.	97	18	77	0	G|1.000;A|0.000	12	11	1	0	0	A	74028894	G	A	74028894	3	1	5	1	0	0	0	0	1	0	0	0	6362	1087	38	1	823	1	GFM2	5	74028894	Missense_Mutation	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10	8910197	74028894	106886366	130	574										
THBS4	7060	hgsc.bcm.edu	37	chr5	79331430	79331430	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	agcggtggctagcggcaggcGcccaggccaccccccagggt	16	16	0	0	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	THBS4-90	NM_003248	exon1	c.G70A	p.A24T	GCAGGCGCCCAGG	.	12	9	0	0	.	0	0	0	0	0	A	79331430	G	A	79331430	3	1	5	1	0	0	0	0	1	0	0	0	15893	1087	38	1	72	1	THBS4	5	79331430	Missense_Mutation	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10	5302536	79331430	101583830	131	575										
SERINC5	256987	broad.mit.edu	37	chr5	79473787	79473787	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	gaagataaagaagaaacaagCcattccaaaacagactctat	6	8	1	4	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	SERINC5-1	NM_001174071	exon3	c.G295A	p.A99T	AACAAGCCATTCC	.	151	5	143	0	.	11	11	0	0	0	T	79473787	C	T	79473787	3	4	5	1	0	0	0	0	1	0	0	0	14118	739	26	3	1168	3	SERINC5	5	79473787	Missense_Mutation	SNP	C	TCGA-OR-A5J5-01A-11D-A29I-10	142357	79473787	101441473	132	576										
NR2F1	7025	bcgsc.ca	37	chr5	92924033	92924033	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	cgcccatgtctgccgaccgcGtcgtggccttcatggaccac	11	17	2	0	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	NR2F1-227	NM_005654	exon2	c.G874A	p.V292I	GACCGCGTCGTGG	.	207	101	53	2	.	2	0	2	0	0	A	92924033	G	A	92924033	3	1	5	1	0	0	0	0	1	0	0	0	10656	1145	40	1	880	1	NR2F1	5	92924033	Missense_Mutation	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10	13450246	92924033	87991227	133	577										
FNIP1	96459	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	131014837	131014837	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	ccagacaggttctccaattcGtggcatcgtgtaaagattac	9	10	1	2	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	FNIP1-92	NM_133372	exon12	c.C1234T	p.R412X	CAATTCGTGGCAT	.	413	220	327	0	.	0	0	0	0	0	A	131014837	G	A	131014837	4	1	5	1	0	0	0	0	0	1	0	0	5994	1153	40	1	2294	1	FNIP1	5	131014837	Nonsense_Mutation	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10	38090804	131014837	49900423	134	578										
RAD50	10111	hgsc.bcm.edu	37	chr5	131931451	131931452	+	Frame_Shift_Ins	INS	-	-	A													0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	aagtcaacagaatcagagctINSaaaaaaaaaggaaaagcggc					novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	RAD50-229	NM_005732	exon13	c.2156_2157insA	p.L719fs	CAGAGCTAAAAAA	.	67	16	41	0	.	0	0	0	0	0	A	131931452	-	A	131931451	7	5	5	1	0	1	1	0	0	0	0	0	13019	1522	53	0	2206	0	RAD50	5	131931451	Frame_Shift_Ins	INS	-	TCGA-OR-A5J5-01A-11D-A29I-10	916614	131931451	48983809	135	579										
PHF15	23338	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	133896521	133896521	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	cagaatatggccagggccatTgagacgcaggaggggctggg	18	8	0	2	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	PHF15-90	NM_015288	exon6	c.T558C	p.I186I	GGCCATTGAGACG	.	437	60	283	0	.	4	4	0	0	0	C	133896521	T	C	133896521	2	2	5	1	0	0	0	0	0	0	0	1	11855	1800	63	4		4	PHF15	5	133896521	Silent	SNP	T	TCGA-OR-A5J5-01A-11D-A29I-10	1965070	133896521	47018739	136	580										
PHF15	23338	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	133896569	133896569	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	tacgacgaggatgttgtctgCgacgtgtgtcgctctcctga	13	10	2	1	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	PHF15-90	NM_015288	exon6	c.C606T	p.C202C	TGTCTGCGACGTG	.	491	248	314	0	.	12	2	10	0	0	T	133896569	C	T	133896569	2	4	5	1	0	0	0	0	0	0	0	1	11855	776	27	1		1	PHF15	5	133896569	Silent	SNP	C	TCGA-OR-A5J5-01A-11D-A29I-10	48	133896569	47018691	137	581										
TRPC7	57113	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	chr5	135692634	135692634	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	gtaggcatagaagtcgtcgtCgcgcagctcctgttccagcg	13	12	0	1	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	.	NM_001167576	exon2	c.G442A	p.D148N	CGTCGTCGCGCAG	.	162	79	11	0	.	0	0	0	0	0	T	135692634	C	T	135692634	3	4	5	1	0	0	0	0	1	0	0	0	16622	884	31	1	2190	1	TRPC7	5	135692634	Missense_Mutation	SNP	C	TCGA-OR-A5J5-01A-11D-A29I-10	1796065	135692634	45222626	138	582										
SIL1	64374	broad.mit.edu	37	chr5	138282960	138282960	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	gctgggggtcctgacggtagCggtcccggcaggtggtcagg	20	10	1	1	rs192255604		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	SIL1-90	NM_001037633	exon11	c.G1232A	p.R411H	CGGTAGCGGTCCC	.	319	9	14	0	C|0.999;T|0.000	219	213	6	0	0	T	138282960	C	T	138282960	3	4	5	1	0	0	0	0	1	0	0	0	14356	768	27	1	157	1	SIL1	5	138282960	Missense_Mutation	SNP	C	TCGA-OR-A5J5-01A-11D-A29I-10	2590326	138282960	42632300	139	583										
TMEM173	340061	ucsc.edu;bcgsc.ca	37	chr5	138861257	138861257	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	gccccgtgacccctgggacaCgggatggatggatgcaggct	16	12	0	1	rs149842998	byfrequency	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	TMEM173-69	NM_198282	exon3	c.G33A	p.P11P	GGGACACGGGATG	.	450	242	278	3	C|0.999;T|0.001	0	0	0	0	0	T	138861257	C	T	138861257	2	4	5	1	0	0	0	0	0	0	0	1	16126	523	19	1		1	TMEM173	5	138861257	Silent	SNP	C	TCGA-OR-A5J5-01A-11D-A29I-10	578297	138861257	42054003	140	584										
PCDHA3	56145	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	140181912	140181912	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	tctgatcagcgtgtccgaccGcgactcaggagtcaatggac	12	12	4	1	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	PCDHA3-98	NM_031497	exon1	c.G1130A	p.R377H	CCGACCGCGACTC	.	451	97	221	0	.	1	1	0	0	0	A	140181912	G	A	140181912	3	1	5	1	0	0	0	0	1	0	0	0	11554	1087	38	1	1132	1	PCDHA3	5	140181912	Missense_Mutation	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10	1320655	140181912	40733348	141	585										
PCDHA7	56141	broad.mit.edu;bcgsc.ca	37	chr5	140214422	140214422	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	ccaggccgcttgactctcggTttccactagagggcgcgtcc	12	15	1	2	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	PCDHA7-94	NM_031852	exon1	c.T454C	p.F152L	TCTCGGTTTCCAC	.	782	26	517	0	.	0	0	0	0	0	C	140214422	T	C	140214422	3	2	5	1	0	0	0	0	1	0	0	0	11558	1725	60	4	456	4	PCDHA7	5	140214422	Missense_Mutation	SNP	T	TCGA-OR-A5J5-01A-11D-A29I-10	32510	140214422	40700838	142	586										
PCDHA13	56136	hgsc.bcm.edu	37	chr5	140263870	140263870	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	tgttgtcgctggtggagagcGgccaagcgccacaggcttcg	16	11	0	1	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	PCDHA13-75	NM_031865	exon1	c.G2017A	p.G673S	GAGAGCGGCCAAG	.	129	31	4	0	.	0	0	0	0	0	A	140263870	G	A	140263870	3	1	5	1	0	0	0	0	1	0	0	0	11552	1116	39	1	2019	1	PCDHA13	5	140263870	Missense_Mutation	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10	49448	140263870	40651390	143	587										
PCDHB5	26167	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	140515676	140515676	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	gcactggacggtggggctccGcccaggtccgggaccaccac	15	16	0	0	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	PCDHB5-95	NM_015669	exon1	c.G660A	p.P220P	GGCTCCGCCCAGG	.	201	56	112	2	.	1	1	0	0	0	A	140515676	G	A	140515676	2	1	5	1	0	0	0	0	0	0	0	1	11574	1074	38	1		1	PCDHB5	5	140515676	Silent	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10	251806	140515676	40399584	144	588										
PCDHB12	56124	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	140589396	140589396	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	tgacattactttaacagcacCtttggattttgaagcaattg	7	7	0	2	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	PCDHB12-93	NM_018932	exon1	c.C917A	p.P306H	CAGCACCTTTGGA	.	92	19	88	1	.	1	0	1	0	0	A	140589396	C	A	140589396	3	1	5	1	0	0	0	0	1	0	0	0	11566	681	24	3	919	3	PCDHB12	5	140589396	Missense_Mutation	SNP	C	TCGA-OR-A5J5-01A-11D-A29I-10	73720	140589396	40325864	145	589										
PCDHB13	56123	hgsc.bcm.edu	37	chr5	140595625	140595625	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	agcacaggctggtggtgctgGtcaaggacaatggcgagcct	16	9	1	0	rs76927815		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	PCDHB13-93	NM_018933	exon1	c.G1930A	p.V644I	GTGCTGGTCAAGG	.	24	14	0	0	G|0.500;A|0.500	46	41	5	0	0	A	140595625	G	A	140595625	3	1	5	1	0	0	0	0	1	0	0	0	11567	1261	44	3	1932	3	PCDHB13	5	140595625	Missense_Mutation	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10	6229	140595625	40319635	146	590										
PCDHGC4	56098	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr5	140865109	140865109	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	taccgagcagaggtagagatCgtagatgtgaatgatcacgc	13	7	1	5	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	PCDHGC4-72	NM_018928	exon1	c.C369T	p.I123I	AGAGATCGTAGAT	.	167	10	127	0	.	0	0	0	0	0	T	140865109	C	T	140865109	2	4	5	1	0	0	0	0	0	0	0	1	11599	874	31	1		1	PCDHGC4	5	140865109	Silent	SNP	C	TCGA-OR-A5J5-01A-11D-A29I-10	269484	140865109	40050151	147	591										
ARAP3	64411	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	141051181	141051181	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	gtactgagggtggggcttccGgaagagacccagacggtact	16	9	0	3	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	ARAP3-291	NM_022481	exon12	c.C1810T	p.R604W	GCTTCCGGAAGAG	.	195	86	129	0	.	1	1	0	0	0	A	141051181	G	A	141051181	3	1	5	1	0	0	0	0	1	0	0	0	840	1115	39	1	2912	1	ARAP3	5	141051181	Missense_Mutation	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10	186072	141051181	39864079	148	592										
SCGB3A2	117156	bcgsc.ca	37	chr5	147261610	147261610	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	gaggcgctatcacacttggtGtgacatcaagataaagagcg	12	8	2	3	rs34212847	byfrequency	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	SCGB3A2-153	NM_054023	exon3	c.G279A	p.V93V	CTTGGTGTGACAT	.	212	8	122	1	G|0.980;A|0.020	0	0	0	0	0	A	147261610	G	A	147261610	2	1	5	1	0	0	0	0	0	0	0	1	13936	1364	48	3		3	SCGB3A2	5	147261610	Silent	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10	6210429	147261610	33653650	149	593										
CSF1R	1436	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	149435889	149435889	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	cagcacgttacgcgctgccaCgtcccggtggatgcactgag	13	14	0	1	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	CSF1R-2640	NM_005211	exon18	c.G2335A	p.V779M	CTGCCACGTCCCG	.	416	114	227	2	.	0	0	0	0	0	T	149435889	C	T	149435889	3	4	5	1	0	0	0	0	1	0	0	0	3938	536	19	1	603	1	CSF1R	5	149435889	Missense_Mutation	SNP	C	TCGA-OR-A5J5-01A-11D-A29I-10	2174279	149435889	31479371	150	594										
C1QTNF2	114898	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr5	159781908	159781908	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	gggccctgggggccaggcagGctgcagaccagttgagggga	20	10	0	2	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	C1QTNF2-91	NM_031908	exon2	c.C246G	p.S82R	AGGCAGGCTGCAG	.	33	27	14	0	.	0	0	0	0	0	C	159781908	G	C	159781908	3	2	5	1	0	0	0	0	1	0	0	0	1969	1194	42	3	754	3	C1QTNF2	5	159781908	Missense_Mutation	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10	10346019	159781908	21133352	151	595										
NUDCD2	134492	hgsc.bcm.edu	37	chr5	162886888	162886888	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	cttgaggatctcgcggccgcCcaccgacagcgccacatgcc	11	18	1	1	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	NUDCD2-90	NM_145266	exon1	c.G169A	p.G57S	GGCCGCCCACCGA	.	99	10	17	0	.	4	4	0	0	0	T	162886888	C	T	162886888	3	4	5	1	0	0	0	0	1	0	0	0	10752	623	22	3	320	3	NUDCD2	5	162886888	Missense_Mutation	SNP	C	TCGA-OR-A5J5-01A-11D-A29I-10	3104980	162886888	18028372	152	596										
CLTB	1212	hgsc.bcm.edu;mdanderson.org	37	chr5	175843341	175843342	+	Missense_Mutation	DNP	GA	GA	CG													0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	gcaccgctctccgacgacgaGaagaagccaaagtcatcagc					novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	GA	GA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	CLTB-90	NM_001834	exon1	c.T23C	p.F8S	GACGAGAAGAAGC	.	192	0	10	0	.	0	0	0	0	0	CG	175843342	GA	CG	175843341	3	2	5	1	0	0	0	0	1	0	0	0	3571	933	33	3	689	3	CLTB	5	175843341	Missense_Mutation	DNP	GA	TCGA-OR-A5J5-01A-11D-A29I-10	12956453	175843341	5071919	153	597										
FGFR4	2264	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	176520335	176520335	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	ttccctctggcccgacaggtActgggcgcatcccccacctc	9	19	1	0	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	FGFR4-1460	NM_022963	exon8	c.A1060G	p.T354A	ACAGGTACTGGGC	.	151	56	68	0	.	0	0	0	0	0	G	176520335	A	G	176520335	3	3	5	1	0	0	0	0	1	0	0	0	5887	391	14	4	1284	4	FGFR4	5	176520335	Missense_Mutation	SNP	A	TCGA-OR-A5J5-01A-11D-A29I-10	676994	176520335	4394925	154	598										
NSD1	64324	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr5	176638620	176638620	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	tactgcagggagaccgagaaCgtggaggttcattgagaggt	16	6	1	3	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	NSD1-188	NM_022455	exon5	c.C3220T	p.R1074C	CGAGAACGTGGAG	.	456	35	314	0	.	0	0	0	0	0	T	176638620	C	T	176638620	3	4	5	1	0	0	0	0	1	0	0	0	10698	536	19	1	3234	1	NSD1	5	176638620	Missense_Mutation	SNP	C	TCGA-OR-A5J5-01A-11D-A29I-10	118285	176638620	4276640	155	599										
COL23A1	91522	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	177669111	177669111	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	gcccttcactcctttccggcCggggacccctcgttctccct	8	20	2	0	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	COL23A1-91	NM_173465	exon27	c.G1513A	p.G505S	TCCGGCCGGGGAC	.	156	32	36	0	.	1	1	0	0	0	T	177669111	C	T	177669111	3	4	5	1	0	0	0	0	1	0	0	0	3688	652	23	1	121	1	COL23A1	5	177669111	Missense_Mutation	SNP	C	TCGA-OR-A5J5-01A-11D-A29I-10	1030491	177669111	3246149	156	600										
RNF130	55819	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	179394008	179394008	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	ttatcagtacatggcaaattCggctgcaaaatatttccagg	8	8	1	0	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	RNF130-227	NM_018434	exon7	c.G948A	p.P316P	CAAATTCGGCTGC	.	126	59	90	0	.	0	0	0	0	0	T	179394008	C	T	179394008	2	4	5	1	0	0	0	0	0	0	0	1	13473	871	31	1		1	RNF130	5	179394008	Silent	SNP	C	TCGA-OR-A5J5-01A-11D-A29I-10	1724897	179394008	1521252	157	601										
HIVEP1	3096	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	12120284	12120284	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	cagaagagtcatctttcgccGttcttcatagtgcttcggag	10	10	4	2	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	HIVEP1-139	NM_002114	exon4	c.G256A	p.V86I	TTCGCCGTTCTTC	.	47	28	40	0	.	0	0	0	0	0	A	12120284	G	A	12120284	3	1	5	1	0	0	0	0	1	0	0	0	7207	1145	40	1	266	1	HIVEP1	6	12120284	Missense_Mutation	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10		12120284	158994783	158	602										
ATXN1	6310	broad.mit.edu	37	chr6	16327865	16327867	+	In_Frame_Del	DEL	TGC	TGC	-													0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	gccccggagccctgctgaggTgctgctgctgctgctgctgc					rs66949327	alternate_allele	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	ATXN1-93	NM_001128164	exon7	c.675_677del	p.225_226del	CTGAGGTGCTGCT	.	44	8	4	0	.	0	0	0	0	0	-	16327867	TGC	-	16327865	7	5	5	1	0	1	0	1	0	0	0	0	1210	1696	59	0	1778	0	ATXN1	6	16327865	In_Frame_Del	DEL	TGC	TCGA-OR-A5J5-01A-11D-A29I-10	4207581	16327865	154787202	159	603										
VARS2	57176	bcgsc.ca	37	chr6	30890885	30890885	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	gattcttcccttccagcgggCgacttgcacctgtcagtctc	9	15	3	0	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	VARS2-26	NM_001167734	exon24	c.C2280T	p.G760G	AGCGGGCGACTTG	.	82	71	73	4	.	0	0	0	0	0	T	30890885	C	T	30890885	2	4	5	1	0	0	0	0	0	0	0	1	17162	755	27	1		1	VARS2	6	30890885	Silent	SNP	C	TCGA-OR-A5J5-01A-11D-A29I-10	14563020	30890885	140224182	160	604										
HLA-B	3106	hgsc.bcm.edu	37	chr6	31323953	31323960	+	Frame_Shift_Del	DEL	CCAGCTTG	CCAGCTTG	-													0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	gcccctggtaccagcgcgctCcagcttgtccttcccgttct					novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	CCAGCTTG	CCAGCTTG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	HLA-B-90	NM_005514	exon3	c.603_610del	p.201_204del	CGCGCTCCAGCTT	.	49	0	47	0	.	0	0	0	0	0	-	31323960	CCAGCTTG	-	31323953	7	5	5	1	0	1	0	1	0	0	0	0	7217	864	30	0	498	0	HLA-B	6	31323953	Frame_Shift_Del	DEL	CCAGCTTG	TCGA-OR-A5J5-01A-11D-A29I-10	433068	31323953	139791114	161	605										
VARS	7407	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr6	31759412	31759412	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	agtcagggagtcctggatggCgttggtgagtgcatggccca	17	8	1	1	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	VARS-93	NM_006295	exon8	c.G1075A	p.A359T	GGATGGCGTTGGT	.	144	123	179	0	.	2	0	2	0	0	T	31759412	C	T	31759412	3	4	5	1	0	0	0	0	1	0	0	0	17161	768	27	1	2811	1	VARS	6	31759412	Missense_Mutation	SNP	C	TCGA-OR-A5J5-01A-11D-A29I-10	435459	31759412	139355655	162	606										
CYP21A2	1589	bcgsc.ca	37	chr6	32007865	32007865	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	ccgagcatggaagagggctcTggacagctcctggaagggca	16	10	1	1	rs55695018		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	CYP21A2-68	.	.	.	.	GGGCTCTGGACAG	.	278	244	275	5	.	1106	7	1098	1	0	C	32007865	T	C	32007865	2	2	5	1	0	0	0	0	0	0	0	1	4159	1567	55	4		4	CYP21A2	6	32007865	Silent	SNP	T	TCGA-OR-A5J5-01A-11D-A29I-10	248453	32007865	139107202	163	607										
SYNGAP1	8831	broad.mit.edu;bcgsc.ca	37	chr6	33415649	33415649	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	ggtggaggaggagctgcgccGggaccaccccgccatggctg	18	13	0	0	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	SYNGAP1-48	NM_006772	exon18	c.G3824A	p.R1275Q	TGCGCCGGGACCA	.	161	71	70	2	.	3	1	2	0	0	A	33415649	G	A	33415649	3	1	5	1	0	0	0	0	1	0	0	0	15484	1116	39	1	3894	1	SYNGAP1	6	33415649	Missense_Mutation	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10	1407784	33415649	137699418	164	608										
C6orf106	64771	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	34558353	34558353	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	gacacccgtttaagactggcCgaaggggtaaggcccatgga	14	10	0	1	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	C6orf106-93	NM_024294	exon5	c.G886A	p.G296S	ACTGGCCGAAGGG	.	76	43	65	0	.	2	2	0	0	0	T	34558353	C	T	34558353	3	4	5	1	0	0	0	0	1	0	0	0	2325	652	23	1	14	1	C6orf106	6	34558353	Missense_Mutation	SNP	C	TCGA-OR-A5J5-01A-11D-A29I-10	1142704	34558353	136556714	165	609										
SRPK1	6732	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	35837637	35837637	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	tgcaccaccctctgtatcacGttccataagcgtttgatcct	6	14	2	1	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	SRPK1-359	NM_003137	exon11	c.C1033T	p.R345C	TATCACGTTCCAT	.	89	75	153	0	.	1	0	1	0	0	A	35837637	G	A	35837637	3	1	5	1	0	0	0	0	1	0	0	0	15196	1145	40	1	958	1	SRPK1	6	35837637	Missense_Mutation	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10	1279284	35837637	135277430	166	610										
BRPF3	27154	broad.mit.edu	37	chr6	36175153	36175153	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	agtattggcagaagctccggCatgacttggagcgggcgcgg	17	9	0	2	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	BRPF3-92	NM_015695	exon4	c.C1669G	p.H557D	CTCCGGCATGACT	.	265	8	288	0	.	5	5	0	0	0	G	36175153	C	G	36175153	3	3	5	1	0	0	0	0	1	0	0	0	1524	710	25	3	1679	3	BRPF3	6	36175153	Missense_Mutation	SNP	C	TCGA-OR-A5J5-01A-11D-A29I-10	337516	36175153	134939914	167	611										
MDGA1	266727	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	37619964	37619964	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	cagcagccgcttggacatgcGtgccggcttgccattcttga	12	13	1	1	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	MDGA1-91	NM_153487	exon7	c.C1135T	p.R379C	ACATGCGTGCCGG	.	115	55	140	1	.	0	0	0	0	0	A	37619964	G	A	37619964	3	1	5	1	0	0	0	0	1	0	0	0	9434	1145	40	1	1776	1	MDGA1	6	37619964	Missense_Mutation	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10	1444811	37619964	133495103	168	612										
DAAM2	23500	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	39835483	39835483	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	taccatagcccagagcctacGcacagagaacagcaagacca	8	14	0	3	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	DAAM2-228	NM_015345	exon6	c.G626A	p.R209H	GCCTACGCACAGA	.	71	62	106	1	.	1	1	0	0	0	A	39835483	G	A	39835483	3	1	5	1	0	0	0	0	1	0	0	0	4222	1087	38	1	644	1	DAAM2	6	39835483	Missense_Mutation	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10	2215519	39835483	131279584	169	613										
TREM1	54210	bcgsc.ca	37	chr6	41243926	41243926	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	aagaccaggctcttactcagGaatccaccagccaggagaat	9	12	2	2	rs2234245	byfrequency	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	TREM1-577	NM_018643	exon4	c.C642G	p.F214L	ACTCAGGAATCCA	.	161	6	177	2	G|0.729;C|0.271	0	0	0	0	0	C	41243926	G	C	41243926	3	2	5	1	0	0	0	0	1	0	0	0	16508	1165	41	3	66	3	TREM1	6	41243926	Missense_Mutation	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10	1408443	41243926	129871141	170	614										
CRISP2	7180	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	49660590	49660590	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	ggaatcacagttacttaggaGatcttgatactggcaactat	9	7	2	2	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	CRISP2-91	NM_001142408	exon10	c.C628A	p.L210I	TTAGGAGATCTTG	.	168	156	203	0	.	0	0	0	0	0	T	49660590	G	T	49660590	3	4	5	1	0	0	0	0	1	0	0	0	3886	942	33	3	107	3	CRISP2	6	49660590	Missense_Mutation	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10	8416664	49660590	121454477	171	615										
PAQR8	85315	broad.mit.edu	37	chr6	52268989	52268991	+	In_Frame_Del	DEL	CTT	CTT	-													0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	gtccacatggcctgcctctcCttcttcttcctggctgcctg					novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	PAQR8-68	NM_133367	exon2	c.978_980del	p.326_327del	CCTCTCCTTCTTC	.	115	8	130	0	.	0	0	0	0	0	-	52268991	CTT	-	52268989	7	5	5	1	0	1	0	1	0	0	0	0	11470	668	24	0	980	0	PAQR8	6	52268989	In_Frame_Del	DEL	CTT	TCGA-OR-A5J5-01A-11D-A29I-10	2608399	52268989	118846078	172	616										
EYS	346007	broad.mit.edu	37	chr6	66005970	66005970	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	cctaagcaatagtcaacattGacaacacacaatctgccaat	4	12	2	1	rs9345601	byfrequency	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	EYS-660	NM_001142800	exon12	c.C1809T	p.V603V	AACATTGACAACA	.	107	4	114	0	G|0.404;A|0.596	0	0	0	0	0	A	66005970	G	A	66005970	2	1	5	1	0	0	0	0	0	0	0	1	5345	1277	45	3		3	EYS	6	66005970	Silent	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10	13736981	66005970	105109097	173	617										
LMBRD1	55788	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	70423650	70423650	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	ttcttcaaattgttttaaggCgcgtttatcccttgctggca	8	9	2	0	rs143758103		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	LMBRD1-91	NM_018368	exon9	c.G802A	p.A268T	TTAAGGCGCGTTT	.	46	44	105	0	A|0.000;C|1.000;T|0.000	0	0	0	0	0	T	70423650	C	T	70423650	3	4	5	1	0	0	0	0	1	0	0	0	8866	768	27	1	852	1	LMBRD1	6	70423650	Missense_Mutation	SNP	C	TCGA-OR-A5J5-01A-11D-A29I-10	4417680	70423650	100691417	174	618										
C6orf57	135154	bcgsc.ca	37	chr6	71289189	71289189	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	aaagtctgaacttgtcaaacAgtcccttaagaagccgaagt	8	9	2	2	rs1048886	byfrequency	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	C6orf57-90	NM_145267	exon2	c.A137G	p.Q46R	TCAAACAGTCCCT	.	63	5	98	0	A|0.787;G|0.213	11	11	0	0	0	G	71289189	A	G	71289189	3	3	5	1	0	0	0	0	1	0	0	0	2372	188	7	4	143	4	C6orf57	6	71289189	Missense_Mutation	SNP	A	TCGA-OR-A5J5-01A-11D-A29I-10	865539	71289189	99825878	175	619										
DPPA5	340168	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	74063857	74063857	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	cgaaaatggctttcagcagcCgcgtctggacctggaacacc	11	13	2	0	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	DPPA5-90	NM_001025290	exon1	c.G92A	p.R31Q	AGCAGCCGCGTCT	.	75	32	79	0	.	0	0	0	0	0	T	74063857	C	T	74063857	3	4	5	1	0	0	0	0	1	0	0	0	4748	652	23	1	270	1	DPPA5	6	74063857	Missense_Mutation	SNP	C	TCGA-OR-A5J5-01A-11D-A29I-10	2774668	74063857	97051210	176	620										
BEND3	57673	broad.mit.edu;bcgsc.ca	37	chr6	107390069	107390069	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	gtggcggatgagccgcagccGcgtggggtccagttgcttct	17	11	1	1	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	BEND3-71	NM_001080450	exon5	c.C2326T	p.R776W	GCAGCCGCGTGGG	.	85	6	51	0	.	1	1	0	0	0	A	107390069	G	A	107390069	3	1	5	1	0	0	0	0	1	0	0	0	1400	1086	38	1	164	1	BEND3	6	107390069	Missense_Mutation	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10	33326212	107390069	63724998	177	621										
PLAGL1	5325	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	144269186	144269186	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	ctgcacacacttgtacggccGctccctggagtgggaataat	11	12	0	0	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	PLAGL1-91	NM_001080953	exon6	c.C88T	p.R30W	ACGGCCGCTCCCT	.	274	253	278	2	.	0	0	0	0	0	A	144269186	G	A	144269186	3	1	5	1	0	0	0	0	1	0	0	0	12048	1086	38	1	1311	1	PLAGL1	6	144269186	Missense_Mutation	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10	36879117	144269186	26845881	178	622										
AKAP12	9590	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr6	151672365	151672365	+	Frame_Shift_Del	DEL	C	C	-													0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	aagtaattgcagaagaagaaCcccccacggttactgaacct					novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	AKAP12-293	NM_005100	exon4	c.2839delC	p.P947fs	GAAGAACCCCCCA	.	33	27	56	0	.	0	0	0	0	0	-	151672365	C	-	151672365	7	5	5	1	0	1	0	1	0	0	0	0	448	507	18	0	2878	0	AKAP12	6	151672365	Frame_Shift_Del	DEL	C	TCGA-OR-A5J5-01A-11D-A29I-10	7403179	151672365	19442702	179	623										
FOXK1	221937	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	4799094	4799094	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	tcgtgcagcaggcccccaccGtcaccatggtcagggtggtc	13	15	2	0	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	FOXK1-516	NM_001037165	exon7	c.G1564A	p.V522I	CCCACCGTCACCA	.	109	37	17	0	.	4	3	1	0	0	A	4799094	G	A	4799094	3	1	5	1	0	0	0	0	1	0	0	0	6033	1145	40	1	1590	1	FOXK1	7	4799094	Missense_Mutation	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10		4799094	154339569	180	624										
TNRC18	84629	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr7	5352513	5352515	+	In_Frame_Del	DEL	GAA	GAA	-													0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	agtcctcgtctgtggtggagGaagaagaggaggaagaggag					novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	GAA	GAA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	TNRC18-46	NM_001080495	exon27	c.8007_8009del	p.2669_2670del	GTGGAGGAAGAAG	.	55	13	51	0	.	0	0	0	0	0	-	5352515	GAA	-	5352513	7	5	5	1	0	1	0	1	0	0	0	0	16376	1174	41	0	913	0	TNRC18	7	5352513	In_Frame_Del	DEL	GAA	TCGA-OR-A5J5-01A-11D-A29I-10	553419	5352513	153786150	181	625										
DNAH11	8701	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	21646323	21646323	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	tgcccctcttggatttaatgCagaaaatccatacacagcgc	7	12	1	1	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	DNAH11-146	.	.	.	.	TTAATGCAGAAAA	.	49	10	38	0	.	2	2	0	0	0	T	21646323	C	T	21646323	3	4	5	1	0	0	0	0	1	0	0	0	4610	710	25	3	3902	3	DNAH11	7	21646323	Missense_Mutation	SNP	C	TCGA-OR-A5J5-01A-11D-A29I-10	16293810	21646323	137492340	182	626										
BLVRA	644	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	43827548	43827548	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	tggttggtgttggccgagccGgctccgtgcggatgagggac	19	9	0	1	rs138715080	byfrequency	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	BLVRA-91	NM_001253823	exon4	c.G58A	p.G20S	CGAGCCGGCTCCG	.	264	76	221	0	G|1.000;A|0.000	26	18	8	0	0	A	43827548	G	A	43827548	3	1	5	1	0	0	0	0	1	0	0	0	1452	1116	39	1	64	1	BLVRA	7	43827548	Missense_Mutation	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10	22181225	43827548	115311115	183	627										
POLM	27434	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	44114081	44114081	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	ccacctgctgcagggcatctAcatcggaccgcaggactggg	13	14	1	0	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	POLM-229	NM_013284	exon7	c.T884C	p.V295A	GCATCTACATCGG	.	241	142	21	0	.	0	0	0	0	0	G	44114081	A	G	44114081	3	3	5	1	0	0	0	0	1	0	0	0	12235	391	14	4	620	4	POLM	7	44114081	Missense_Mutation	SNP	A	TCGA-OR-A5J5-01A-11D-A29I-10	286533	44114081	115024582	184	628										
OGDH	4967	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	44747186	44747186	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	cctgctgtctcctagctgtcGccattcccctttgacctcct	6	18	1	1	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	OGDH-228	NM_002541	exon22	c.G2802A	p.S934S	GCTGTCGCCATTC	.	108	66	99	0	.	0	0	0	0	0	A	44747186	G	A	44747186	2	1	5	1	0	0	0	0	0	0	0	1	10868	1074	38	1		1	OGDH	7	44747186	Silent	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10	633105	44747186	114391477	185	629										
PKD1L1	168507	bcgsc.ca	37	chr7	47840387	47840387	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	aaacagcagcccggggaaggCgtctgtgaaggtgccaggtg	17	9	1	1	rs13231277	byfrequency	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	PKD1L1-145	NM_138295	exon54	c.G8053A	p.A2685T	GGAAGGCGTCTGT	.	180	8	154	0	C|0.858;T|0.142	0	0	0	0	0	T	47840387	C	T	47840387	3	4	5	1	0	0	0	0	1	0	0	0	11993	768	27	1	512	1	PKD1L1	7	47840387	Missense_Mutation	SNP	C	TCGA-OR-A5J5-01A-11D-A29I-10	3093201	47840387	111298276	186	630										
PION	54103	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	76942815	76942815	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	tcagtattaccggaggaagcCgcacaatgatactgaatttc	9	9	1	2	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	PION-514	NM_017439	exon28	c.G2261A	p.R754Q	GGAAGCCGCACAA	.	50	21	51	0	.	0	0	0	0	0	T	76942815	C	T	76942815	3	4	5	1	0	0	0	0	1	0	0	0	11963	652	23	1	319	1	PION	7	76942815	Missense_Mutation	SNP	C	TCGA-OR-A5J5-01A-11D-A29I-10	29102428	76942815	82195848	187	631										
CACNA2D1	781	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	81637024	81637024	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	tgtcttattttcaaattggcCggttatgttgaagaccggaa	10	6	2	2	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	CACNA2D1-96	NM_000722	exon16	c.G1411A	p.G471S	ATTGGCCGGTTAT	.	95	34	121	0	.	0	0	0	0	0	T	81637024	C	T	81637024	3	4	5	1	0	0	0	0	1	0	0	0	2554	652	23	1	1960	1	CACNA2D1	7	81637024	Missense_Mutation	SNP	C	TCGA-OR-A5J5-01A-11D-A29I-10	4694209	81637024	77501639	188	632										
GRM3	2913	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	86415919	86415919	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	tgcagaagcccaacgcgcgcGtcgtggtcctcttcatgcgc	12	15	2	1	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	GRM3-528	NM_000840	exon3	c.G811A	p.V271I	GCGCGCGTCGTGG	.	94	35	16	0	.	0	0	0	0	0	A	86415919	G	A	86415919	3	1	5	1	0	0	0	0	1	0	0	0	6819	1145	40	1	817	1	GRM3	7	86415919	Missense_Mutation	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10	4778895	86415919	72722744	189	633										
TECPR1	25851	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	97854151	97854151	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	tactgccacccctcctggtcCgtgccccccggaacgctgaa	9	19	0	1	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	TECPR1-91	NM_015395	exon19	c.G2652A	p.T884T	CTGGTCCGTGCCC	.	150	47	99	0	.	5	5	0	0	0	T	97854151	C	T	97854151	2	4	5	1	0	0	0	0	0	0	0	1	15780	639	23	1		1	TECPR1	7	97854151	Silent	SNP	C	TCGA-OR-A5J5-01A-11D-A29I-10	11438232	97854151	61284512	190	634										
TRRAP	8295	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	98609726	98609726	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	ctgaaaacggttctccgggaCgagatcattgcttggcacaa	11	10	2	2	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	TRRAP-923	NM_001244580	exon72	c.C11328T	p.D3776D	CCGGGACGAGATC	.	232	79	183	0	.	29	22	7	0	0	T	98609726	C	T	98609726	2	4	5	1	0	0	0	0	0	0	0	1	16639	535	19	1		1	TRRAP	7	98609726	Silent	SNP	C	TCGA-OR-A5J5-01A-11D-A29I-10	755575	98609726	60528937	191	635										
SERPINE1	5054	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr7	100778833	100778833	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	tagagaacctgggaatgaccGacatgttcagacagtttcag	11	8	2	3	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	SERPINE1-652	NM_000602	exon6	c.G958A	p.D320N	ATGACCGACATGT	.	88	5	104	0	.	0	0	0	0	0	A	100778833	G	A	100778833	3	1	5	1	0	0	0	0	1	0	0	0	14146	1058	37	1	976	1	SERPINE1	7	100778833	Missense_Mutation	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10	2169107	100778833	58359830	192	636										
SPDYE6	729597	bcgsc.ca	37	chr7	101989090	101989090	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	ttttgtttggagtcctcgtcGtcctcctccatgtcattggc	9	12	1	0	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	SPDYE6-1	NM_001146210	exon6	c.C783T	p.D261D	CTCGTCGTCCTCC	.	1622	118	1447	4	.	2	2	0	0	0	A	101989090	G	A	101989090	2	1	5	1	0	0	0	0	0	0	0	1	15070	1136	40	1		1	SPDYE6	7	101989090	Silent	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10	1210257	101989090	57149573	193	637										
DNAJB9	4189	broad.mit.edu	37	chr7	108212318	108212318	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	agaaggcctttcacaagttgGccatgaagtaccaccctgac	9	12	1	3	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	DNAJB9-226	NM_012328	exon2	c.G148T	p.A50S	AAGTTGGCCATGA	.	124	5	103	0	.	1	1	0	0	0	T	108212318	G	T	108212318	3	4	5	1	0	0	0	0	1	0	0	0	4638	1203	42	3	150	3	DNAJB9	7	108212318	Missense_Mutation	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10	6223228	108212318	50926345	194	638										
LMOD2	442721	ucsc.edu;bcgsc.ca	37	chr7	123302045	123302045	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	gaggaggaagaagacagtgaCgaagaggaaagaacaattga	15	3	0	6	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	LMOD2-68	NM_207163	exon2	c.C405T	p.D135D	CAGTGACGAAGAG	.	160	107	129	2	.	0	0	0	0	0	T	123302045	C	T	123302045	2	4	5	1	0	0	0	0	0	0	0	1	8881	535	19	1		1	LMOD2	7	123302045	Silent	SNP	C	TCGA-OR-A5J5-01A-11D-A29I-10	15089727	123302045	35836618	195	639										
LRGUK	136332	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	133932369	133932369	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	agctctaatgggaaggatacGccctgatcacacactcctat	8	12	2	1	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	LRGUK-227	NM_144648	exon17	c.G2045A	p.R682H	GGATACGCCCTGA	.	140	80	126	0	.	1	1	0	0	0	A	133932369	G	A	133932369	3	1	5	1	0	0	0	0	1	0	0	0	8970	1087	38	1	2111	1	LRGUK	7	133932369	Missense_Mutation	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10	10630324	133932369	25206294	196	640										
NUP205	23165	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	135323345	135323345	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	atattgccagtcactcatgtTacagagttcccctaccttcc	5	14	2	1	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	NUP205-207	NM_015135	exon38	c.T5306C	p.L1769S	TCATGTTACAGAG	.	185	36	158	0	.	18	12	6	0	0	C	135323345	T	C	135323345	3	2	5	1	0	0	0	0	1	0	0	0	10788	1764	61	4	5456	4	NUP205	7	135323345	Missense_Mutation	SNP	T	TCGA-OR-A5J5-01A-11D-A29I-10	1390976	135323345	23815318	197	641										
ATP6V0A4	50617	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	138417706	138417706	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	tggatgaggatgctgggggcGtgctgagatacatggacgtc	18	6	0	2	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	ATP6V0A4-91	NM_130841	exon16	c.C1824T	p.H608H	GGGGGCGTGCTGA	.	183	65	107	0	.	0	0	0	0	0	A	138417706	G	A	138417706	2	1	5	1	0	0	0	0	0	0	0	1	1171	1136	40	1		1	ATP6V0A4	7	138417706	Silent	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10	3094361	138417706	20720957	198	642										
JHDM1D	80853	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	139818942	139818942	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	tttccagcaagtttttggctAcaaaccaacatatggcttca	6	10	1	0	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	JHDM1D-91	NM_030647	exon9	c.T1217C	p.V406A	TTGGCTACAAACC	.	69	25	61	0	.	0	0	0	0	0	G	139818942	A	G	139818942	3	3	5	1	0	0	0	0	1	0	0	0	7969	391	14	4	1656	4	JHDM1D	7	139818942	Missense_Mutation	SNP	A	TCGA-OR-A5J5-01A-11D-A29I-10	1401236	139818942	19319721	199	643										
GSTK1	373156	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	142965205	142965205	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	cctttgggctgcccatcaccGtggcccatgtggatggccaa	12	14	1	0	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	GSTK1-90	NM_001143679	exon6	c.G727A	p.V243M	ATCACCGTGGCCC	.	108	74	119	0	.	199	79	120	0	0	A	142965205	G	A	142965205	3	1	5	1	0	0	0	0	1	0	0	0	6857	1145	40	1	749	1	GSTK1	7	142965205	Missense_Mutation	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10	3146263	142965205	16173458	200	644										
ZNF425	155054	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	148801944	148801944	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	ccttcatgcccctcttcaggCggaagcaccggtcacactgc	9	17	4	0	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	ZNF425-136	NM_001001661	exon4	c.G1019A	p.R340H	TTCAGGCGGAAGC	.	48	14	31	0	.	0	0	0	0	0	T	148801944	C	T	148801944	3	4	5	1	0	0	0	0	1	0	0	0	17936	768	27	1	1243	1	ZNF425	7	148801944	Missense_Mutation	SNP	C	TCGA-OR-A5J5-01A-11D-A29I-10	5836739	148801944	10336719	201	645										
SMARCD3	6604	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	150938652	150938652	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	cctgttggtcttcacatactGccacagggcctggacaatgg	11	12	2	0	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	SMARCD3-228	NM_001003801	exon8	c.C865T	p.Q289X	CATACTGCCACAG	.	202	47	114	0	.	124	109	15	0	0	A	150938652	G	A	150938652	4	1	5	1	0	0	0	0	0	1	0	0	14814	1328	46	3	610	3	SMARCD3	7	150938652	Nonsense_Mutation	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10	2136708	150938652	8200011	202	646										
HTR5A	3361	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	154863297	154863297	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	tctacaaggctgccaagttcCgcgtgggctccaggaagacc	12	13	1	1	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	HTR5A-155	NM_024012	exon1	c.C688T	p.R230C	AAGTTCCGCGTGG	.	261	64	110	0	.	0	0	0	0	0	T	154863297	C	T	154863297	3	4	5	1	0	0	0	0	1	0	0	0	7471	652	23	1	690	1	HTR5A	7	154863297	Missense_Mutation	SNP	C	TCGA-OR-A5J5-01A-11D-A29I-10	3924645	154863297	4275366	203	647										
RBM33	155435	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	155534695	155534695	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	gtcagcgcgtcaccaccctcGcgggccgtggcgggttccag	15	16	2	0	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	RBM33-23	NM_053043	exon13	c.G2232A	p.S744S	ACCCTCGCGGGCC	.	336	81	139	0	.	1	1	0	0	0	A	155534695	G	A	155534695	2	1	5	1	0	0	0	0	0	0	0	1	13165	1074	38	1		1	RBM33	7	155534695	Silent	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10	671398	155534695	3603968	204	648										
SHH	6469	hgsc.bcm.edu	37	chr7	155596413	155596413	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	cctcccgatttggccgccacCgagttctctgcgggtgagga	13	14	1	1	rs9333633	byfrequency	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	SHH-1134	NM_000193	exon3	c.G570A	p.S190S	CGCCACCGAGTTC	.	29	5	0	0	C|0.996;T|0.004	6	5	1	0	0	T	155596413	C	T	155596413	2	4	5	1	0	0	0	0	0	0	0	1	14314	639	23	1		1	SHH	7	155596413	Silent	SNP	C	TCGA-OR-A5J5-01A-11D-A29I-10	61718	155596413	3542250	205	649										
NOM1	64434	hgsc.bcm.edu	37	chr7	156742868	156742868	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	gcctcccaggaagccgcggcCgtcccgggtcaaggccaagg	15	16	1	0	rs199647631		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	NOM1-90	NM_138400	exon1	c.C437A	p.P146Q	CGCGGCCGTCCCG	.	15	10	0	0	C|0.999;A|0.000	0	0	0	0	0	A	156742868	C	A	156742868	3	1	5	1	0	0	0	0	1	0	0	0	10559	652	23	2	439	2	NOM1	7	156742868	Missense_Mutation	SNP	C	TCGA-OR-A5J5-01A-11D-A29I-10	1146455	156742868	2395795	206	650										
UBE3C	9690	broad.mit.edu;bcgsc.ca	37	chr7	157000478	157000478	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	tcgatgccttcgagatgcatGcctggggatcatcaagttgg	13	9	2	1	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	UBE3C-704	NM_014671	exon13	c.G1658A	p.C553Y	ATGCATGCCTGGG	.	165	6	75	0	.	2	2	0	0	0	A	157000478	G	A	157000478	3	1	5	1	0	0	0	0	1	0	0	0	16919	1319	46	3	1708	3	UBE3C	7	157000478	Missense_Mutation	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10	257610	157000478	2138185	207	651										
UBE3C	9690	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	157013470	157013470	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	cgctgcagtccaccctggacGgtgagttctctaggacacag	12	13	1	1	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	UBE3C-704	NM_014671	exon15	c.G2002A	p.V668M	CTGGACGGTGAGT	.	125	15	52	0	.	0	0	0	0	0	A	157013470	G	A	157013470	3	1	5	1	0	0	0	0	1	0	0	0	16919	1130	39	1	2060	1	UBE3C	7	157013470	Missense_Mutation	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10	12992	157013470	2125193	208	652										
CSMD1	64478	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr8	3047597	3047597	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	ctccttccgtatctgggctcGgggacagagctgcattgggt	14	11	1	1	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	CSMD1-86	NM_033225	exon34	c.C5235T	p.P1745P	GGGCTCGGGGACA	.	126	43	126	0	.	0	0	0	0	0	A	3047597	G	A	3047597	2	1	5	1	0	0	0	0	0	0	0	1	3950	1103	39	1		1	CSMD1	8	3047597	Silent	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10		3047597	143316425	209	653										
CSMD1	64478	broad.mit.edu;bcgsc.ca	37	chr8	3432588	3432588	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	gattggatccacatgttctcGctggaaacacatagaaacga	9	9	1	1	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	CSMD1-86	NM_033225	exon10	c.C1223T	p.A408V	GTTCTCGCTGGAA	.	90	28	107	1	.	0	0	0	0	0	A	3432588	G	A	3432588	3	1	5	1	0	0	0	0	1	0	0	0	3950	1101	38	1	9528	1	CSMD1	8	3432588	Missense_Mutation	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10	384991	3432588	142931434	210	654										
RP1L1	94137	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr8	10466464	10466464	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	tcctagtgctcgtggggtccGtgtgggtcttgccaggggcc	17	11	1	0	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	RP1L1-139	NM_178857	exon4	c.C5144T	p.T1715M	GGGTCCGTGTGGG	.	76	23	44	0	.	0	0	0	0	0	A	10466464	G	A	10466464	3	1	5	1	0	0	0	0	1	0	0	0	13568	1145	40	1	2062	1	RP1L1	8	10466464	Missense_Mutation	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10	7033876	10466464	135897558	211	655										
NUDT18	79873	bcgsc.ca	37	chr8	21965113	21965113	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	catgccacccctctgctccaTagggtcgaggccacaggcag	11	16	1	0	rs3739435	byfrequency	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	.	NM_024815	exon5	c.A670G	p.M224V	GCTCCATAGGGTC	.	131	5	64	0	T|0.476;C|0.524	5	5	0	0	0	C	21965113	T	C	21965113	3	2	5	1	0	0	0	0	1	0	0	0	10764	1406	49	4	305	4	NUDT18	8	21965113	Missense_Mutation	SNP	T	TCGA-OR-A5J5-01A-11D-A29I-10	11498649	21965113	124398909	212	656										
SORBS3	10174	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr8	22421834	22421834	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	aaagtagacaatgtctggacGgaagagtcctggaaccagtt	12	7	1	2	rs201952170		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	SORBS3-90	NM_005775	exon9	c.G714A	p.T238T	CTGGACGGAAGAG	.	162	104	128	0	G|0.999;A|0.000	0	0	0	0	0	A	22421834	G	A	22421834	2	1	5	1	0	0	0	0	0	0	0	1	14964	1103	39	1		1	SORBS3	8	22421834	Silent	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10	456721	22421834	123942188	213	657										
LOXL2	4017	broad.mit.edu;bcgsc.ca	37	chr8	23174525	23174525	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	ggggcaggccacgtcctcccCgtcgtggcggcagtgcgcca	16	16	0	0	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	LOXL2-272	NM_002318	exon9	c.G1573A	p.G525R	CCTCCCCGTCGTG	.	221	11	43	0	.	0	0	0	0	0	T	23174525	C	T	23174525	3	4	5	1	0	0	0	0	1	0	0	0	8927	652	23	1	775	1	LOXL2	8	23174525	Missense_Mutation	SNP	C	TCGA-OR-A5J5-01A-11D-A29I-10	752691	23174525	123189497	214	658										
UNC5D	137970	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr8	35579761	35579761	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	cagcgacattgctttgtactCgggcttgggtgctgccgtcg	14	11	0	0	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	UNC5D-96	NM_080872	exon9	c.C1151T	p.S384L	TGTACTCGGGCTT	.	222	148	167	0	.	0	0	0	0	0	T	35579761	C	T	35579761	3	4	5	1	0	0	0	0	1	0	0	0	17033	893	31	1	1185	1	UNC5D	8	35579761	Missense_Mutation	SNP	C	TCGA-OR-A5J5-01A-11D-A29I-10	12405236	35579761	110784261	215	659										
UNC5D	137970	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr8	35588557	35588557	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	cttactcataccacacggtgCcatcccagaggagaattctt	7	13	2	2	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	UNC5D-96	NM_080872	exon11	c.C1709G	p.A570G	ACGGTGCCATCCC	.	111	73	143	1	.	2	0	2	0	0	G	35588557	C	G	35588557	3	3	5	1	0	0	0	0	1	0	0	0	17033	739	26	3	1751	3	UNC5D	8	35588557	Missense_Mutation	SNP	C	TCGA-OR-A5J5-01A-11D-A29I-10	8796	35588557	110775465	216	660										
ANK1	286	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr8	41561586	41561586	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	acctcgtttggggaagcaccGtttttcagaagcagagtcac	11	10	2	2	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	ANK1-716	NM_001142446	exon20	c.C2367T	p.N789N	AGCACCGTTTTTC	.	99	59	114	0	.	0	0	0	0	0	A	41561586	G	A	41561586	2	1	5	1	0	0	0	0	0	0	0	1	620	1136	40	1		1	ANK1	8	41561586	Silent	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10	5973029	41561586	104802436	217	661										
OPRK1	4986	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr8	54147371	54147371	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	gcagagatgccaacagatgaCgacagcagccagatgcagat	12	10	0	5	rs200269505		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	OPRK1-70	NM_000912	exon3	c.G558A	p.S186S	AGATGACGACAGC	.	216	69	185	1	.	0	0	0	0	0	T	54147371	C	T	54147371	2	4	5	1	0	0	0	0	0	0	0	1	10914	523	19	1		1	OPRK1	8	54147371	Silent	SNP	C	TCGA-OR-A5J5-01A-11D-A29I-10	12585785	54147371	92216651	218	662										
OPRK1	4986	hgsc.bcm.edu	37	chr8	54163562	54163562	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	ctcggggcgcaggtagggccCggctccccgcggaagatctg	17	14	1	1	rs1051660	byfrequency	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	OPRK1-70	NM_000912	exon2	c.G36T	p.P12P	AGGGCCCGGCTCC	.	6	4	0	0	C|0.895;A|0.105	0	0	0	0	0	A	54163562	C	A	54163562	2	1	5	1	0	0	0	0	0	0	0	1	10914	639	23	2		2	OPRK1	8	54163562	Silent	SNP	C	TCGA-OR-A5J5-01A-11D-A29I-10	16191	54163562	92200460	219	663										
BHLHE22	27319	hgsc.bcm.edu	37	chr8	65493532	65493532	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	gtcctcctcctcgtcgccccTgggctgcttcgagccggctg	12	18	0	0	rs62519835		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	BHLHE22-90	NM_152414	exon1	c.T185A	p.L62Q	CGCCCCTGGGCTG	.	7	5	0	0	T|0.935;A|0.065	0	0	0	0	0	A	65493532	T	A	65493532	3	1	5	1	0	0	0	0	1	0	0	0	1422	1580	55	5	187	5	BHLHE22	8	65493532	Missense_Mutation	SNP	T	TCGA-OR-A5J5-01A-11D-A29I-10	11329970	65493532	80870490	220	664										
VCPIP1	80124	hgsc.bcm.edu	37	chr8	67579170	67579170	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	ggtggcggcggcaacggaggCggcggcggcggcggctgaga	24	10	0	1	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	VCPIP1-662	NM_025054	exon1	c.G24T	p.P8P	CGGAGGCGGCGGC	.	27	19	2	0	.	0	0	0	0	0	A	67579170	C	A	67579170	2	1	5	1	0	0	0	0	0	0	0	1	17179	755	27	2		2	VCPIP1	8	67579170	Silent	SNP	C	TCGA-OR-A5J5-01A-11D-A29I-10	2085638	67579170	78784852	221	665										
ZFPM2	23414	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	106814998	106814998	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	ctggacggcaaagtgtttccGaatccagaaagcgaacgaaa	11	9	0	1	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	ZFPM2-139	NM_012082	exon8	c.G2688A	p.P896P	GTTTCCGAATCCA	.	55	10	46	0	.	0	0	0	0	0	A	106814998	G	A	106814998	2	1	5	1	0	0	0	0	0	0	0	1	17695	1045	37	1		1	ZFPM2	8	106814998	Silent	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10	39235828	106814998	39549024	222	666										
SYBU	55638	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr8	110587864	110587864	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	tccctgtcagccccttccccCgtgacctgctcttccagaga	7	19	2	2	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	SYBU-227	NM_001099752	exon8	c.G1263A	p.T421T	TTCCCCCGTGACC	.	109	34	129	0	.	32	26	6	0	0	T	110587864	C	T	110587864	2	4	5	1	0	0	0	0	0	0	0	1	15464	639	23	1		1	SYBU	8	110587864	Silent	SNP	C	TCGA-OR-A5J5-01A-11D-A29I-10	3772866	110587864	35776158	223	667										
PHF20L1	51105	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr8	133823330	133823330	+	Frame_Shift_Del	DEL	A	A	-													0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	tgttggggttgatggtgctgAaaaaaaggaagactacaatg					novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	PHF20L1-92	NM_016018	exon9	c.887delA	p.E296fs	GTGCTGAAAAAAA	.	71	43	82	0	.	0	0	0	0	0	-	133823330	A	-	133823330	7	5	5	1	0	1	0	1	0	0	0	0	11861	246	9	0	917	0	PHF20L1	8	133823330	Frame_Shift_Del	DEL	A	TCGA-OR-A5J5-01A-11D-A29I-10	23235466	133823330	12540692	224	668										
ZFAT	57623	broad.mit.edu	37	chr8	135649757	135649757	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	cgataatgcagatgtgcttcCgcagctggcgcgtgttggag	15	9	0	1	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	ZFAT-90	NM_001174157	exon3	c.G395A	p.R132Q	TGCTTCCGCAGCT	.	174	5	160	0	.	0	0	0	0	0	T	135649757	C	T	135649757	3	4	5	1	0	0	0	0	1	0	0	0	17669	652	23	1	3392	1	ZFAT	8	135649757	Missense_Mutation	SNP	C	TCGA-OR-A5J5-01A-11D-A29I-10	1826427	135649757	10714265	225	669										
FAM135B	51059	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr8	139278014	139278014	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	tatgggtacctcttcattccGgtataagatctgaaagaccc	8	10	3	3	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	FAM135B-31	NM_015912	exon4	c.C229T	p.R77W	CATTCCGGTATAA	.	135	9	104	0	.	0	0	0	0	0	A	139278014	G	A	139278014	3	1	5	1	0	0	0	0	1	0	0	0	5465	1115	39	1	4059	1	FAM135B	8	139278014	Missense_Mutation	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10	3628257	139278014	7086008	226	670										
GPR20	2843	hgsc.bcm.edu	37	chr8	142367290	142367290	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	cgagaaagatgatgagcaccGtgagcaggagctgcatggcc	15	9	0	5	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	GPR20-91	NM_005293	exon2	c.C734T	p.T245M	AGCACCGTGAGCA	.	43	29	6	0	.	0	0	0	0	0	A	142367290	G	A	142367290	3	1	5	1	0	0	0	0	1	0	0	0	6700	1145	40	1	346	1	GPR20	8	142367290	Missense_Mutation	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10	3089276	142367290	3996732	227	671										
PLEC	5339	hgsc.bcm.edu	37	chr8	144998514	144998514	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	cgccgcaggcgctcgttctcCgcctccttctccttgagcgc	10	19	2	1	rs75586449	byfrequency	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	PLEC-141	NM_201380	exon31	c.G5994A	p.A1998A	GTTCTCCGCCTCC	.	4	4	0	0	C|0.961;T|0.039	11	4	7	0	0	T	144998514	C	T	144998514	2	4	5	1	0	0	0	0	0	0	0	1	12081	639	23	1		1	PLEC	8	144998514	Silent	SNP	C	TCGA-OR-A5J5-01A-11D-A29I-10	2631224	144998514	1365508	228	672										
SPATC1	375686	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr8	145094825	145094825	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	cccaggtgtcttcctgccccCgtccccagcagtggcaaacg	10	18	1	0	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	SPATC1-91	NM_001134374	exon2	c.C227T	p.P76L	TGCCCCCGTCCCC	.	107	26	70	0	.	0	0	0	0	0	T	145094825	C	T	145094825	3	4	5	1	0	0	0	0	1	0	0	0	15054	652	23	1	233	1	SPATC1	8	145094825	Missense_Mutation	SNP	C	TCGA-OR-A5J5-01A-11D-A29I-10	96311	145094825	1269197	229	673										
OPLAH	26873	hgsc.bcm.edu;broad.mit.edu	37	chr8	145106724	145106724	+	Frame_Shift_Del	DEL	C	C	-													0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	ggccgcgggcgccaggctcgCcccctgcggagggaggcgag					novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	OPLAH-68	NM_017570	exon27	c.3626delG	p.G1209fs	GGCTCGCCCCCTG	.	36	10	5	0	.	0	0	0	0	0	-	145106724	C	-	145106724	7	5	5	1	0	1	0	1	0	0	0	0	10905	739	26	0	248	0	OPLAH	8	145106724	Frame_Shift_Del	DEL	C	TCGA-OR-A5J5-01A-11D-A29I-10	11899	145106724	1257298	230	674										
CPSF1	29894	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr8	145620718	145620718	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	gatcttcctgacaggccatgGggcatcataggacaggtagg	14	9	2	1	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	CPSF1-91	NM_013291	exon27	c.C3028A	p.P1010T	GCCATGGGGCATC	.	222	75	108	0	.	78	66	12	0	0	T	145620718	G	T	145620718	3	4	5	1	0	0	0	0	1	0	0	0	3830	1232	43	3	1351	3	CPSF1	8	145620718	Missense_Mutation	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10	513994	145620718	743304	231	675										
KIFC2	90990	hgsc.bcm.edu	37	chr8	145697835	145697835	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	aggtggctggcctcacccacTgggacgtgcccaacctggag	14	14	1	0	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	KIFC2-92	NM_145754	exon15	c.T1699C	p.W567R	ACCCACTGGGACG	.	135	82	7	0	.	70	21	49	0	0	C	145697835	T	C	145697835	3	2	5	1	0	0	0	0	1	0	0	0	8334	1580	55	4	1757	4	KIFC2	8	145697835	Missense_Mutation	SNP	T	TCGA-OR-A5J5-01A-11D-A29I-10	77117	145697835	666187	232	676										
RECQL4	9401	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr8	145736909	145736909	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	ccagaagcgtcggtcctgccCgtacacctgggccgggtagc	14	15	0	1	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	RECQL4-1083	NM_004260	exon22	c.G3532A	p.G1178R	CCTGCCCGTACAC	.	182	40	86	0	.	89	64	24	0	1	T	145736909	C	T	145736909	3	4	5	1	0	0	0	0	1	0	0	0	13237	652	23	1	98	1	RECQL4	8	145736909	Missense_Mutation	SNP	C	TCGA-OR-A5J5-01A-11D-A29I-10	39074	145736909	627113	233	677										
C9orf66	157983	hgsc.bcm.edu	37	chr9	215057	215057	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	gccccccgcggcgcgcaggtTgcggccggacagcccagcgc	16	19	0	0	rs481905	byfrequency	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	C9orf66-514	NM_152569	exon1	c.A340G	p.N114D	GCAGGTTGCGGCC	.	5	5	0	0	T|0.413;C|0.587	0	0	0	0	0	C	215057	T	C	215057	3	2	5	1	0	0	0	0	1	0	0	0	2496	1812	63	4	551	4	C9orf66	9	215057	Missense_Mutation	SNP	T	TCGA-OR-A5J5-01A-11D-A29I-10		215057	140998374	234	678										
KANK1	23189	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr9	712006	712006	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	agaacatgaacgacatcgtcGtgtaccacagaggctccagg	11	11	0	3	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	KANK1-517	NM_001256876	exon7	c.G1240A	p.V414M	ATCGTCGTGTACC	.	321	24	205	0	.	1	1	0	0	0	A	712006	G	A	712006	3	1	5	1	0	0	0	0	1	0	0	0	7997	1145	40	1	1246	1	KANK1	9	712006	Missense_Mutation	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10	496949	712006	140501425	235	679										
KANK1	23189	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr9	738458	738458	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	aacacagccctccattacagCgtgtcccactccaacttcga	5	17	0	0	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	KANK1-517	NM_001256876	exon12	c.C3507T	p.S1169S	TTACAGCGTGTCC	.	274	58	206	0	.	3	2	1	0	0	T	738458	C	T	738458	2	4	5	1	0	0	0	0	0	0	0	1	7997	767	27	1		1	KANK1	9	738458	Silent	SNP	C	TCGA-OR-A5J5-01A-11D-A29I-10	26452	738458	140474973	236	680										
VLDLR	7436	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr9	2643347	2643347	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	atccccatcagctgggtatgCgacgatgatgcagactgctc	11	12	1	2	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	VLDLR-516	NM_003383	exon5	c.C636T	p.C212C	GGTATGCGACGAT	.	293	75	165	0	.	4	4	0	0	0	T	2643347	C	T	2643347	2	4	5	1	0	0	0	0	0	0	0	1	17212	776	27	1		1	VLDLR	9	2643347	Silent	SNP	C	TCGA-OR-A5J5-01A-11D-A29I-10	1904889	2643347	138570084	237	681										
ERMP1	79956	hgsc.bcm.edu	37	chr9	5832719	5832719	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	agcgcgtcgaactccccgcgGtgtccagcggccccgcgtag	14	17	0	0	rs13302671	byfrequency	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	ERMP1-69	NM_024896	exon1	c.C309G	p.H103Q	CCCGCGGTGTCCA	.	8	6	0	0	G|0.981;C|0.019	0	0	0	0	0	C	5832719	G	C	5832719	3	2	5	1	0	0	0	0	1	0	0	0	5249	1252	44	3	2465	3	ERMP1	9	5832719	Missense_Mutation	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10	3189372	5832719	135380712	238	682										
BNC2	54796	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr9	16419579	16419579	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	tgctaagggagggctgcgacGagtccaggcccatgtcatcg	15	11	1	0	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	BNC2-92	NM_017637	exon7	c.C2708T	p.S903L	TGCGACGAGTCCA	.	70	67	67	1	.	0	0	0	0	0	A	16419579	G	A	16419579	3	1	5	1	0	0	0	0	1	0	0	0	1476	1059	37	1	595	1	BNC2	9	16419579	Missense_Mutation	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10	10586860	16419579	124793852	239	683										
KIF24	347240	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr9	34306372	34306372	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	ctccctcatgcccagggggcGttttcgaacacaaactctga	9	14	2	1	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	KIF24-22	NM_194313	exon3	c.C691T	p.R231C	GGGGGCGTTTTCG	.	93	85	114	1	.	0	0	0	0	0	A	34306372	G	A	34306372	3	1	5	1	0	0	0	0	1	0	0	0	8313	1145	40	1	3459	1	KIF24	9	34306372	Missense_Mutation	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10	17886793	34306372	106907059	240	684										
TLN1	7094	hgsc.bcm.edu;broad.mit.edu	37	chr9	35715145	35715145	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	ctcagctgcctcccgcagccGctgctgctgctcctcactgt	9	19	2	0	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	TLN1-609	NM_006289	exon21	c.C2665T	p.R889W	GCAGCCGCTGCTG	.	91	5	25	0	.	4	4	0	0	0	A	35715145	G	A	35715145	3	1	5	1	0	0	0	0	1	0	0	0	15984	1086	38	1	5108	1	TLN1	9	35715145	Missense_Mutation	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10	1408773	35715145	105498286	241	685										
TMEM8B	51754	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr9	35853771	35853771	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	ggttaccagctatgcatcaaCgagcaggaggagctgggcct	14	10	1	0	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	TMEM8B-91	NM_001042590	exon13	c.C1353T	p.N451N	CATCAACGAGCAG	.	43	37	13	0	.	16	0	16	0	0	T	35853771	C	T	35853771	2	4	5	1	0	0	0	0	0	0	0	1	16252	535	19	1		1	TMEM8B	9	35853771	Silent	SNP	C	TCGA-OR-A5J5-01A-11D-A29I-10	138626	35853771	105359660	242	686										
GRHPR	9380	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr9	37428531	37428531	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	gctgtgtggctatggactcaCgcagagcactgtcggcatca	13	11	2	1	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	GRHPR-90	NM_012203	exon5	c.C455T	p.T152M	GACTCACGCAGAG	.	123	115	30	0	.	75	0	75	0	0	T	37428531	C	T	37428531	3	4	5	1	0	0	0	0	1	0	0	0	6787	536	19	1	473	1	GRHPR	9	37428531	Missense_Mutation	SNP	C	TCGA-OR-A5J5-01A-11D-A29I-10	1574760	37428531	103784900	243	687										
TJP2	9414	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	71861604	71861604	+	Splice_Site	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	ctttttgtttatatttctatAgctacaatcaacctaaattc	2	8	2	0	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	TJP2-115	NM_001170414	exon19	c.2498-2A>G	.	TTCTATAGCTACA	.	94	94	80	0	.	0	0	0	0	0	G	71861604	A	G	71861604	5	3	5	1	0	0	0	0	0	0	1	0	15967	434	15	4	2792	4	TJP2	9	71861604	Splice_Site	SNP	A	TCGA-OR-A5J5-01A-11D-A29I-10	34433073	71861604	69351827	244	688										
TMEM2	23670	broad.mit.edu;bcgsc.ca	37	chr9	74305086	74305086	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	aaaccgttttttccgtcaagCggaatggaacgctgcacgga	11	10	1	0	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	TMEM2-92	NM_013390	exon22	c.G3773A	p.R1258H	GTCAAGCGGAATG	.	244	11	183	0	.	0	0	0	0	0	T	74305086	C	T	74305086	3	4	5	1	0	0	0	0	1	0	0	0	16158	768	27	1	390	1	TMEM2	9	74305086	Missense_Mutation	SNP	C	TCGA-OR-A5J5-01A-11D-A29I-10	2443482	74305086	66908345	245	689										
VPS13A	23230	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr9	79933230	79933230	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	ggaaaccatcccagaagaaaCggcttcttctactgcacatt	7	12	2	2	rs144009026		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	VPS13A-161	NM_001018038	exon41	c.C5036T	p.T1679M	AAGAAACGGCTTC	.	123	113	104	0	C|1.000;T|0.000	0	0	0	0	0	T	79933230	C	T	79933230	3	4	5	1	0	0	0	0	1	0	0	0	17227	536	19	1	5198	1	VPS13A	9	79933230	Missense_Mutation	SNP	C	TCGA-OR-A5J5-01A-11D-A29I-10	5628144	79933230	61280201	246	690										
WNK2	65268	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr9	96021245	96021245	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	cctgttgtgccccccatcacGcccctggcgggaatcgacgg	12	17	1	0	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	WNK2-765	NM_006648	exon11	c.G2415A	p.T805T	CATCACGCCCCTG	.	288	37	83	0	.	3	3	0	0	0	A	96021245	G	A	96021245	2	1	5	1	0	0	0	0	0	0	0	1	17416	1074	38	1		1	WNK2	9	96021245	Silent	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10	16088015	96021245	45192186	247	691										
WNK2	65268	broad.mit.edu	37	chr9	96021293	96021293	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	ccggccctcccagacctgccGaccgcgactgtgcctcccgt	10	21	0	1	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	WNK2-765	NM_006648	exon11	c.G2463A	p.P821P	CCTGCCGACCGCG	.	248	6	22	0	.	0	0	0	0	0	A	96021293	G	A	96021293	2	1	5	1	0	0	0	0	0	0	0	1	17416	1045	37	1		1	WNK2	9	96021293	Silent	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10	48	96021293	45192138	248	692										
NCBP1	4686	hgsc.bcm.edu;bcgsc.ca	37	chr9	100409836	100409838	+	In_Frame_Del	DEL	AAG	AAG	-													0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	tgctgataaaccacatccacAagaagaggtaaatggatttc					novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	AAG	AAG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	NCBP1-90	NM_002486	exon7	c.674_676del	p.225_226del	ATCCACAAGAAGA	.	71	69	81	2	.	0	0	0	0	0	-	100409838	AAG	-	100409836	7	5	5	1	0	1	0	1	0	0	0	0	10240	130	5	0	700	0	NCBP1	9	100409836	In_Frame_Del	DEL	AAG	TCGA-OR-A5J5-01A-11D-A29I-10	4388543	100409836	40803595	249	693										
INVS	27130	broad.mit.edu	37	chr9	102888723	102888723	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	agaacaccacttatgtattgCgtgttggctgacagattgga	11	7	0	3	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	INVS-92	NM_183245	exon3	c.C165T	p.C55C	GTATTGCGTGTTG	.	236	6	162	0	.	0	0	0	0	0	T	102888723	C	T	102888723	2	4	5	1	0	0	0	0	0	0	0	1	7808	776	27	1		1	INVS	9	102888723	Silent	SNP	C	TCGA-OR-A5J5-01A-11D-A29I-10	2478887	102888723	38324708	250	694										
EPB41L4B	54566	bcgsc.ca	37	chr9	111956668	111956668	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	gccaggtctggagggaggtcGtcttcatcactgcggttact	14	10	4	0	rs41278379	byfrequency	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	EPB41L4B-92	NM_019114	exon21	c.C2055T	p.D685D	GAGGTCGTCTTCA	.	308	15	203	0	G|0.994;A|0.006	0	0	0	0	0	A	111956668	G	A	111956668	2	1	5	1	0	0	0	0	0	0	0	1	5169	1136	40	1		1	EPB41L4B	9	111956668	Silent	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10	9067945	111956668	29256763	251	695										
EPB41L4B	54566	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr9	112042162	112042162	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	ttccacaaggtccaagtggtAcacaatctgatcaaacaaat	6	10	2	1	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	EPB41L4B-92	NM_019114	exon2	c.T346C	p.Y116H	AGTGGTACACAAT	.	134	32	94	0	.	2	1	1	0	0	G	112042162	A	G	112042162	3	3	5	1	0	0	0	0	1	0	0	0	5169	391	14	4	2608	4	EPB41L4B	9	112042162	Missense_Mutation	SNP	A	TCGA-OR-A5J5-01A-11D-A29I-10	85494	112042162	29171269	252	696										
C9orf43	257169	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr9	116176059	116176059	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	ataaactcccagtgctcaccGtggtagacatcttagattcc	7	12	2	2	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	C9orf43-90	NM_152786	exon3	c.G172A	p.V58M	CTCACCGTGGTAG	.	164	155	119	0	.	0	0	0	0	0	A	116176059	G	A	116176059	3	1	5	1	0	0	0	0	1	0	0	0	2489	1145	40	1	178	1	C9orf43	9	116176059	Missense_Mutation	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10	4133897	116176059	25037372	253	697										
RGS3	5998	hgsc.bcm.edu;broad.mit.edu	37	chr9	116269824	116269824	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	ctacaccgaggtggccaagcGcgggggccagcacaccctgc	14	16	0	0	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	RGS3-227	NM_144488	exon14	c.G1343A	p.R448H	CCAAGCGCGGGGG	.	170	25	8	0	.	2	2	0	0	0	A	116269824	G	A	116269824	3	1	5	1	0	0	0	0	1	0	0	0	13341	1087	38	1	1534	1	RGS3	9	116269824	Missense_Mutation	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10	93765	116269824	24943607	254	698										
DFNB31	25861	hgsc.bcm.edu	37	chr9	117166245	117166245	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	ctactcctgctcttggtggaCaccgactgccttcctcggcc	9	17	1	0	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	DFNB31-95	NM_015404	exon10	c.G2349A	p.V783V	GGTGGACACCGAC	.	79	4	31	0	.	0	0	0	0	0	T	117166245	C	T	117166245	2	4	5	1	0	0	0	0	0	0	0	1	4466	465	17	3		3	DFNB31	9	117166245	Silent	SNP	C	TCGA-OR-A5J5-01A-11D-A29I-10	896421	117166245	24047186	255	699										
TNC	3371	bcgsc.ca	37	chr9	117848659	117848659	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	ctcacatacacatttgccctCgacacagcggccccgactgt	7	17	1	0	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	TNC-517	NM_002160	exon3	c.G1351A	p.E451K	TGCCCTCGACACA	.	236	45	156	3	.	0	0	0	0	0	T	117848659	C	T	117848659	3	4	5	1	0	0	0	0	1	0	0	0	16307	893	31	1	5358	1	TNC	9	117848659	Missense_Mutation	SNP	C	TCGA-OR-A5J5-01A-11D-A29I-10	682414	117848659	23364772	256	700										
RABGAP1	23637	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr9	125861009	125861009	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	tgcagttaaaagaaatgtgcCgtcgggaactcgacaaggca	12	8	0	1	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	RABGAP1-500	NM_012197	exon23	c.C2749T	p.R917C	ATGTGCCGTCGGG	.	97	30	70	0	.	21	18	3	0	0	T	125861009	C	T	125861009	3	4	5	1	0	0	0	0	1	0	0	0	12999	652	23	1	2835	1	RABGAP1	9	125861009	Missense_Mutation	SNP	C	TCGA-OR-A5J5-01A-11D-A29I-10	8012350	125861009	15352422	257	701										
CRB2	286204	hgsc.bcm.edu	37	chr9	126135831	126135831	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	gctgtgcgcatcctgctggcTgagaacttcaccggctgctt	12	13	1	1	rs7848449	byfrequency	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	CRB2-91	NM_173689	exon10	c.T3021C	p.A1007A	GCTGGCTGAGAAC	.	7	6	0	0	T|0.886;C|0.114	0	0	0	0	0	C	126135831	T	C	126135831	2	2	5	1	0	0	0	0	0	0	0	1	3855	1567	55	4		4	CRB2	9	126135831	Silent	SNP	T	TCGA-OR-A5J5-01A-11D-A29I-10	274822	126135831	15077600	258	702										
FAM129B	64855	hgsc.bcm.edu	37	chr9	130269566	130269571	+	In_Frame_Del	DEL	CCGCCC	CCGCCC	-													0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	gggtgctggggctggggctgCcgcccccgccgctgttgctg					novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	CCGCCC	CCGCCC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	FAM129B-68	NM_022833	exon14	c.1794_1799del	p.598_600del	GGGCTGCCGCCCC	.	123	101	2	0	.	0	0	0	0	0	-	130269571	CCGCCC	-	130269566	7	5	5	1	0	1	0	1	0	0	0	0	5453	739	26	0	445	0	FAM129B	9	130269566	In_Frame_Del	DEL	CCGCCC	TCGA-OR-A5J5-01A-11D-A29I-10	4133735	130269566	10943865	259	703										
FAM129B	64855	bcgsc.ca	37	chr9	130289573	130289573	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	ggtgctggaagaggttccccGagaagacgatgcgctcgtcc	15	11	0	3	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	FAM129B-68	NM_022833	exon3	c.C215G	p.S72W	TTCCCCGAGAAGA	.	147	5	83	0	.	7	7	0	0	0	C	130289573	G	C	130289573	3	2	5	1	0	0	0	0	1	0	0	0	5453	1059	37	2	2073	2	FAM129B	9	130289573	Missense_Mutation	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10	20007	130289573	10923858	260	704										
DNM1	1759	bcgsc.ca	37	chr9	130984508	130984508	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	cacatccgggacacactgccGgggctgcggaacaagctgca	13	14	0	0	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	DNM1-228	.	.	.	.	ACTGCCGGGGCTG	.	382	25	245	3	.	2	2	0	0	0	A	130984508	G	A	130984508	2	1	5	1	0	0	0	0	0	0	0	1	4681	1103	39	1		1	DNM1	9	130984508	Silent	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10	694935	130984508	10228923	261	705										
FIBCD1	84929	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr9	133799257	133799257	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	aggacgtccagacagtctcgGggccgggagcctgagggagg	19	10	1	2	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	FIBCD1-90	NM_001145106	exon5	c.C723T	p.P241P	GTCTCGGGGCCGG	.	331	308	34	0	.	0	0	0	0	0	A	133799257	G	A	133799257	2	1	5	1	0	0	0	0	0	0	0	1	5903	1219	43	3		3	FIBCD1	9	133799257	Silent	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10	2814749	133799257	7414174	262	706										
CAMSAP1	157922	hgsc.bcm.edu;broad.mit.edu	37	chr9	138719314	138719315	+	Frame_Shift_Ins	INS	-	-	G													0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	ccttccgccggcagctgcacINSggggggctgcagctcagcca					novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	CAMSAP1-92	NM_015447	exon8	c.1162_1163insC	p.V388fs	GCTGCACGGGGGG	.	178	19	38	0	.	0	0	0	0	0	G	138719315	-	G	138719314	7	5	5	1	0	1	1	0	0	0	0	0	2617	536	19	0	3686	0	CAMSAP1	9	138719314	Frame_Shift_Ins	INS	-	TCGA-OR-A5J5-01A-11D-A29I-10	4920057	138719314	2494117	263	707										
SDCCAG3	10807	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr9	139299638	139299638	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	catttttgcttctaacttccGctcaagcgtcctcacccttg	5	15	3	0	rs200655256		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	SDCCAG3-90	NM_001039707	exon7	c.C910T	p.R304W	ACTTCCGCTCAAG	.	118	112	80	0	G|0.999;A|0.000	25	0	25	0	0	A	139299638	G	A	139299638	3	1	5	1	0	0	0	0	1	0	0	0	13993	1086	38	1	413	1	SDCCAG3	9	139299638	Missense_Mutation	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10	580324	139299638	1913793	264	708										
NOTCH1	4851	hgsc.bcm.edu	37	chr9	139400219	139400219	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	gcattcggggcccgtgaaggGgcccaggcacaggcaggtgg	19	11	0	1	rs61751542	byfrequency	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	NOTCH1-5459	NM_017617	exon25	c.C4129T	p.P1377S	TGAAGGGGCCCAG	.	10	9	2	0	G|0.990;A|0.010	2	0	2	0	0	A	139400219	G	A	139400219	3	1	5	1	0	0	0	0	1	0	0	0	10576	1232	43	3	3578	3	NOTCH1	9	139400219	Missense_Mutation	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10	100581	139400219	1813212	265	709										
LCN10	414332	broad.mit.edu	37	chr9	139634004	139634004	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	aggatggtgtgtgtacgggaCgctgtgggagaggaaaacag	19	4	0	1	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	LCN10-67	NM_001001712	exon6	c.G576A	p.A192A	ACGGGACGCTGTG	.	314	7	139	1	.	0	0	0	0	0	T	139634004	C	T	139634004	2	4	5	1	0	0	0	0	0	0	0	1	8703	550	19	1		1	LCN10	9	139634004	Silent	SNP	C	TCGA-OR-A5J5-01A-11D-A29I-10	233785	139634004	1579427	266	710										
MAMDC4	158056	hgsc.bcm.edu;bcgsc.ca	37	chr9	139748110	139748110	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	agctgaggctctggtaccacGcggcctctggaggtgcaccc	14	14	2	1	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	MAMDC4-156	NM_206920	exon4	c.G442A	p.A148T	TACCACGCGGCCT	.	136	131	7	0	.	3	0	3	0	0	A	139748110	G	A	139748110	3	1	5	1	0	0	0	0	1	0	0	0	9232	1087	38	1	456	1	MAMDC4	9	139748110	Missense_Mutation	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10	114106	139748110	1465321	267	711										
PNPLA7	375775	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr9	140373513	140373513	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	ctctccccgcctcaccagctTgggcaggctcctcctggaga	10	18	2	1	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	PNPLA7-91	NM_001098537	exon24	c.A2758G	p.K920E	CCAGCTTGGGCAG	.	308	49	47	0	.	0	0	0	0	0	C	140373513	T	C	140373513	3	2	5	1	0	0	0	0	1	0	0	0	12199	1821	63	4	1318	4	PNPLA7	9	140373513	Missense_Mutation	SNP	T	TCGA-OR-A5J5-01A-11D-A29I-10	625403	140373513	839918	268	712										
AKR1C3	8644	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr10	5139659	5139659	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	ttcatcgaccagagttggtcCgaccagccttggaaaactca	9	12	2	1	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	AKR1C3-515	NM_001253908	exon3	c.C286T	p.R96X	TTGGTCCGACCAG	.	149	9	131	0	.	58	58	0	0	0	T	5139659	C	T	5139659	4	4	5	1	0	0	0	0	0	1	0	0	471	644	23	1	296	1	AKR1C3	10	5139659	Nonsense_Mutation	SNP	C	TCGA-OR-A5J5-01A-11D-A29I-10		5139659	130395088	269	713										
CALML3	810	bcgsc.ca	37	chr10	5567320	5567320	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	ggagatccgcgaggccttccGcgtgttcgacaaggacggca	15	12	0	1	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	CALML3-90	NM_005185	exon1	c.G272A	p.R91H	CCTTCCGCGTGTT	.	248	171	35	2	.	0	0	0	0	0	A	5567320	G	A	5567320	3	1	5	1	0	0	0	0	1	0	0	0	2593	1087	38	1	274	1	CALML3	10	5567320	Missense_Mutation	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10	427661	5567320	129967427	270	714										
ITIH2	3698	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr10	7768994	7768994	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	ttgatttcaaccagaacattCgaacttggagaaatgattta	7	6	1	4	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	ITIH2-93	NM_002216	exon10	c.C1066T	p.R356X	AACATTCGAACTT	.	88	53	108	0	.	0	0	0	0	0	T	7768994	C	T	7768994	4	4	5	1	0	0	0	0	0	1	0	0	7925	876	31	1	1104	1	ITIH2	10	7768994	Nonsense_Mutation	SNP	C	TCGA-OR-A5J5-01A-11D-A29I-10	2201674	7768994	127765753	271	715										
CUBN	8029	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr10	16994285	16994285	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	tgttacttacatggaggttgCgcttgaatgatccagctgca	11	8	0	2	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	CUBN-166	NM_001081	exon33	c.G4959A	p.A1653A	AGGTTGCGCTTGA	.	189	62	188	0	.	0	0	0	0	0	T	16994285	C	T	16994285	2	4	5	1	0	0	0	0	0	0	0	1	4057	755	27	1		1	CUBN	10	16994285	Silent	SNP	C	TCGA-OR-A5J5-01A-11D-A29I-10	9225291	16994285	118540462	272	716										
PTPLA	9200	hgsc.bcm.edu	37	chr10	17659149	17659149	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	gacccccaggcgcctccgctCgccgggagcctcccggtcct	12	21	0	0	rs7895850	byfrequency	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	PTPLA-226	NM_014241	exon1	c.G190C	p.E64Q	TCCGCTCGCCGGG	.	8	8	0	0	C|0.007;G|0.002;T|0.991	0	0	0	0	0	G	17659149	C	G	17659149	3	3	5	1	0	0	0	0	1	0	0	0	12807	893	31	2	704	2	PTPLA	10	17659149	Missense_Mutation	SNP	C	TCGA-OR-A5J5-01A-11D-A29I-10	664864	17659149	117875598	273	717										
GPR158	57512	hgsc.bcm.edu	37	chr10	25465062	25465062	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	gccccacttacaccgccgcgGccccaatcaggggccccggg	12	20	1	0	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	GPR158-141	NM_020752	exon1	c.G713A	p.G238D	GCCGCGGCCCCAA	.	26	19	1	0	.	0	0	0	0	0	A	25465062	G	A	25465062	3	1	5	1	0	0	0	0	1	0	0	0	6683	1203	42	3	715	3	GPR158	10	25465062	Missense_Mutation	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10	7805913	25465062	110069685	274	718										
PARD3	56288	broad.mit.edu	37	chr10	34663856	34663856	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	aagaccagaaggctcacagtTccttccatcttggtgcttct	8	12	3	2	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	PARD3-92	NM_001184788	exon11	c.A1614T	p.G538G	CACAGTTCCTTCC	.	120	5	102	0	.	0	0	0	0	0	A	34663856	T	A	34663856	2	1	5	1	0	0	0	0	0	0	0	1	11472	1770	62	5		5	PARD3	10	34663856	Silent	SNP	T	TCGA-OR-A5J5-01A-11D-A29I-10	9198794	34663856	100870891	275	719										
BMS1	9790	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	43285924	43285924	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	aactgaagaagacaaagaagCgattaaaacacaggttctgg	10	6	1	4	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	BMS1-93	NM_014753	exon5	c.C601T	p.R201X	AAGAAGCGATTAA	.	76	7	64	0	.	7	7	0	0	0	T	43285924	C	T	43285924	4	4	5	1	0	0	0	0	0	1	0	0	1473	760	27	1	615	1	BMS1	10	43285924	Nonsense_Mutation	SNP	C	TCGA-OR-A5J5-01A-11D-A29I-10	8622068	43285924	92248823	276	720										
RET	5979	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr10	43622076	43622076	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	gactccctgatttatgacgaCggcctctcagaggaggagac	12	11	1	4	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	RET-4507	NM_020630	exon19	c.C3093T	p.D1031D	TGACGACGGCCTC	.	90	26	65	0	.	6	3	3	0	0	T	43622076	C	T	43622076	2	4	5	1	0	0	0	0	0	0	0	1	13270	535	19	1		1	RET	10	43622076	Silent	SNP	C	TCGA-OR-A5J5-01A-11D-A29I-10	336152	43622076	91912671	277	721										
PTPN20B	26095	hgsc.bcm.edu	37	chr10	46584455	46584455	+	Frame_Shift_Del	DEL	T	T	-													0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	gaagaatatctcggtatctgTttttttctctgttgcttggt					novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	.	NM_015605	exon7	c.560delA	p.N187fs	TATCTGTTTTTTT	.	80	33	60	0	.	0	0	0	0	0	-	46584455	T	-	46584455	7	5	5	1	0	1	0	1	0	0	0	0	12820	1725	60	0	722	0	PTPN20B	10	46584455	Frame_Shift_Del	DEL	T	TCGA-OR-A5J5-01A-11D-A29I-10	2962379	46584455	88950292	278	722										
GPRIN2	9721	hgsc.bcm.edu	37	chr10	47000217	47000217	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	tgtcatgcagtccctgcggcGccccagctgctgcggctgct	13	16	1	0	rs72780221	byfrequency	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	GPRIN2-90	NM_014696	exon3	c.G1337A	p.R446H	TGCGGCGCCCCAG	.	9	4	0	0	G|0.901;A|0.099	1	1	0	0	0	A	47000217	G	A	47000217	3	1	5	1	0	0	0	0	1	0	0	0	6751	1087	38	1	1339	1	GPRIN2	10	47000217	Missense_Mutation	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10	415762	47000217	88534530	279	723										
PPYR1	5540	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	47087520	47087520	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	gcgcctgcagaggcaggggcGcgtgtttcacaagggcacct	16	12	1	1	rs115443559	byfrequency	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	PPYR1-524	NM_005972	exon3	c.G737A	p.R246H	AGGGGCGCGTGTT	.	153	26	111	0	G|0.999;A|0.001	0	0	0	0	0	A	47087520	G	A	47087520	3	1	5	1	0	0	0	0	1	0	0	0	12448	1087	38	1	739	1	PPYR1	10	47087520	Missense_Mutation	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10	87303	47087520	88447227	280	724										
C10orf71	118461	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	chr10	50533416	50533416	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	gaggaccctgggcaggggtcGagcatggccaggatggaggc	20	9	0	0	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	C10orf71-90	NM_001135196	exon3	c.G2826A	p.S942S	GGGGTCGAGCATG	.	127	83	86	0	.	0	0	0	0	0	A	50533416	G	A	50533416	2	1	5	1	0	0	0	0	0	0	0	1	1618	1045	37	1		1	C10orf71	10	50533416	Silent	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10	3445896	50533416	85001331	281	725										
DRGX	644168	broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr10	50574313	50574313	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	gacagcttctgagtgctcgcGggccttcatgcgcagggtgg	16	11	2	1	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	.	.	.	.	.	GCTCGCGGGCCTT	.	127	79	44	1	.	0	0	0	0	0	A	50574313	G	A	50574313	3	1	5	1	0	0	0	0	1	0	0	0	4774	1116	39	1	154	1	DRGX	10	50574313	Missense_Mutation	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10	40897	50574313	84960434	282	726										
PCDH15	65217	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	55587306	55587306	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	tctttgtacactcagcttgaCgtcttggataaagtaaggat	9	7	3	1	rs143538460		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	PCDH15-193	NM_001142763	exon33	c.G4229A	p.R1410H	GCTTGACGTCTTG	.	105	29	101	0	C|1.000;T|0.000	2	2	0	0	0	T	55587306	C	T	55587306	3	4	5	1	0	0	0	0	1	0	0	0	11540	536	19	1	3280	1	PCDH15	10	55587306	Missense_Mutation	SNP	C	TCGA-OR-A5J5-01A-11D-A29I-10	5012993	55587306	79947441	283	727										
FAM13C	220965	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr10	61012730	61012730	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	gttgttggcttccctgtggaCggtcttcatcagagtcctct	11	11	4	1	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	FAM13C-70	NM_198215	exon12	c.G1361A	p.R454H	TGTGGACGGTCTT	.	262	72	238	0	.	4	4	0	0	0	T	61012730	C	T	61012730	3	4	5	1	0	0	0	0	1	0	0	0	5470	536	19	1	408	1	FAM13C	10	61012730	Missense_Mutation	SNP	C	TCGA-OR-A5J5-01A-11D-A29I-10	5425424	61012730	74522017	284	728										
SUPV3L1	6832	broad.mit.edu	37	chr10	70967601	70967601	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	gacctttgcatggttacgccGatacatcaaatggcctttac	8	11	1	0	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	SUPV3L1-227	NM_003171	exon14	c.G1829A	p.R610Q	TACGCCGATACAT	.	201	4	179	0	.	43	43	0	0	0	A	70967601	G	A	70967601	3	1	5	1	0	0	0	0	1	0	0	0	15439	1058	37	1	1883	1	SUPV3L1	10	70967601	Missense_Mutation	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10	9954871	70967601	64567146	285	729										
H2AFY2	55506	broad.mit.edu	37	chr10	71871407	71871407	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	gcgagagcatcggcatctacGtgcaggagatggccaagctc	14	11	1	2	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	H2AFY2-91	NM_018649	exon9	c.G1087A	p.V363M	ATCTACGTGCAGG	.	124	5	91	0	.	42	42	0	0	0	A	71871407	G	A	71871407	3	1	5	1	0	0	0	0	1	0	0	0	6951	1145	40	1	1117	1	H2AFY2	10	71871407	Missense_Mutation	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10	903806	71871407	63663340	286	730										
SPOCK2	9806	hgsc.bcm.edu	37	chr10	73848075	73848075	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	agcaccagccgcccgcagccCggggcgcgcatcgtggtctg	15	17	1	0	rs2306324		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	SPOCK2-90	NM_001134434	exon2	c.G12A	p.P4P	GCAGCCCGGGGCG	.	4	4	0	0	C|0.870;T|0.130	0	0	0	0	0	T	73848075	C	T	73848075	2	4	5	1	0	0	0	0	0	0	0	1	15117	639	23	1		1	SPOCK2	10	73848075	Silent	SNP	C	TCGA-OR-A5J5-01A-11D-A29I-10	1976668	73848075	61686672	287	731										
USP54	159195	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr10	75290071	75290071	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	tactctctatttcccagtcaCgagagtgtaaaggcagggtc	10	10	2	1	rs150999517		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	USP54-721	NM_152586	exon12	c.G1658A	p.R553H	CAGTCACGAGAGT	.	160	56	175	1	C|0.999;T|0.000	0	0	0	0	0	T	75290071	C	T	75290071	3	4	5	1	0	0	0	0	1	0	0	0	17123	536	19	1	3440	1	USP54	10	75290071	Missense_Mutation	SNP	C	TCGA-OR-A5J5-01A-11D-A29I-10	1441996	75290071	60244676	288	732										
GHITM	27069	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	85909926	85909926	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	tccactgtggccatgtgtgcGcccagtgaaaagtttctgaa	11	10	1	2	rs201995209		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	GHITM-90	NM_014394	exon7	c.G708A	p.A236A	GTGTGCGCCCAGT	.	169	37	136	1	G|0.999;A|0.001	58	46	12	0	0	A	85909926	G	A	85909926	2	1	5	1	0	0	0	0	0	0	0	1	6390	1074	38	1		1	GHITM	10	85909926	Silent	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10	10619855	85909926	49624821	289	733										
PAPSS2	9060	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr10	89469057	89469057	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	ggtgggttccgaggatgtacCgtgtggctaacaggtatgtc	16	7	0	0	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	PAPSS2-493	NM_001015880	exon2	c.C132T	p.T44T	ATGTACCGTGTGG	.	33	12	44	0	.	1	1	0	0	0	T	89469057	C	T	89469057	2	4	5	1	0	0	0	0	0	0	0	1	11464	639	23	1		1	PAPSS2	10	89469057	Silent	SNP	C	TCGA-OR-A5J5-01A-11D-A29I-10	3559131	89469057	46065690	290	734										
LCOR	84458	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr10	98708916	98708916	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	acaaagaaccaaagcctgccGaaagcatctccagtcaccac	6	15	2	1	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	LCOR-189	NM_001170766	exon6	c.G102A	p.P34P	CCTGCCGAAAGCA	.	82	52	81	1	.	0	0	0	0	0	A	98708916	G	A	98708916	2	1	5	1	0	0	0	0	0	0	0	1	8711	1045	37	1		1	LCOR	10	98708916	Silent	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10	9239859	98708916	36825831	291	735										
RRP12	23223	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	99129265	99129265	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	gcccagtgcagacttgaccaCgtcacgggtgcgggaggcca	15	13	1	2	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	RRP12-92	NM_015179	exon25	c.G2872A	p.V958M	TGACCACGTCACG	.	192	74	155	1	.	6	5	1	0	0	T	99129265	C	T	99129265	3	4	5	1	0	0	0	0	1	0	0	0	13721	536	19	1	1061	1	RRP12	10	99129265	Missense_Mutation	SNP	C	TCGA-OR-A5J5-01A-11D-A29I-10	420349	99129265	36405482	292	736										
RRP12	23223	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr10	99145706	99145706	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	gtgctcaggccaggcctggcGtggaagaggctgtgaaaggc	18	9	1	2	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	RRP12-92	NM_015179	exon9	c.C1062T	p.H354H	CCTGGCGTGGAAG	.	257	157	173	0	.	0	0	0	0	0	A	99145706	G	A	99145706	2	1	5	1	0	0	0	0	0	0	0	1	13721	1136	40	1		1	RRP12	10	99145706	Silent	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10	16441	99145706	36389041	293	737										
PDZD7	79955	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr10	102789754	102789754	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	ctgggtcccgcccctaccttCgatgggggagttgatgagga	15	11	0	2	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	PDZD7-136	NM_001195263	exon2	c.G223A	p.E75K	TACCTTCGATGGG	.	30	6	23	0	.	0	0	0	0	0	T	102789754	C	T	102789754	3	4	5	1	0	0	0	0	1	0	0	0	11733	893	31	1	1366	1	PDZD7	10	102789754	Missense_Mutation	SNP	C	TCGA-OR-A5J5-01A-11D-A29I-10	3644048	102789754	32744993	294	738										
SUFU	51684	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr10	104359294	104359294	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	agaatggcctcgcccacgacCgggccccgtaagttccccag	11	17	0	1	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	SUFU-2246	NM_001178133	exon8	c.C1015T	p.R339W	CACGACCGGGCCC	.	114	35	88	0	.	0	0	0	0	0	T	104359294	C	T	104359294	3	4	5	1	0	0	0	0	1	0	0	0	15405	643	23	1	1045	1	SUFU	10	104359294	Missense_Mutation	SNP	C	TCGA-OR-A5J5-01A-11D-A29I-10	1569540	104359294	31175453	295	739										
PDCD11	22984	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr10	105182858	105182858	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	tcagtgggggtccagtgcccGacctggtcctgaaagccagc	14	13	1	1	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	PDCD11-275	NM_014976	exon18	c.G2611A	p.D871N	GTGCCCGACCTGG	.	294	188	215	0	.	2	0	2	0	0	A	105182858	G	A	105182858	3	1	5	1	0	0	0	0	1	0	0	0	11646	1058	37	1	2677	1	PDCD11	10	105182858	Missense_Mutation	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10	823564	105182858	30351889	296	740										
PDCD11	22984	broad.mit.edu;bcgsc.ca	37	chr10	105185215	105185215	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	cagagggcacctctcctactAccaagctgaaggttgggaag	12	11	1	2	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	PDCD11-275	NM_014976	exon20	c.A3238G	p.T1080A	CCTACTACCAAGC	.	205	16	196	1	.	1	1	0	0	0	G	105185215	A	G	105185215	3	3	5	1	0	0	0	0	1	0	0	0	11646	391	14	4	3312	4	PDCD11	10	105185215	Missense_Mutation	SNP	A	TCGA-OR-A5J5-01A-11D-A29I-10	2357	105185215	30349532	297	741										
CALHM1	255022	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	105215444	105215444	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	ggcctgcgtgaagcagggccGcacagagcgcaccacgaatg	15	13	0	2	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	CALHM1-91	NM_001001412	exon2	c.C616T	p.R206W	AGGGCCGCACAGA	.	161	19	76	0	.	0	0	0	0	0	A	105215444	G	A	105215444	3	1	5	1	0	0	0	0	1	0	0	0	2588	1086	38	1	428	1	CALHM1	10	105215444	Missense_Mutation	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10	30229	105215444	30319303	298	742										
INPP5F	22876	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr10	121586489	121586489	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	actctgatgaattccttacaAattctaagtctgatgaagac	6	8	3	5	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	INPP5F-229	NM_014937	exon20	c.A2596G	p.N866D	CTTACAAATTCTA	.	183	110	143	0	.	0	0	0	0	0	G	121586489	A	G	121586489	3	3	5	1	0	0	0	0	1	0	0	0	7779	14	1	4	2674	4	INPP5F	10	121586489	Missense_Mutation	SNP	A	TCGA-OR-A5J5-01A-11D-A29I-10	16371045	121586489	13948258	299	743										
ADAM12	8038	ucsc.edu;bcgsc.ca;mdanderson.org	37	chr10	127755329	127755329	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	catgtgcgcacacagcgtccGgcttcagggtacaggtggtg	15	11	1	0	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	ADAM12-716	NM_021641	exon13	c.C1379T	p.P460L	GCGTCCGGCTTCA	.	374	122	339	2	.	0	0	0	0	0	A	127755329	G	A	127755329	3	1	5	1	0	0	0	0	1	0	0	0	236	1116	39	1	1502	1	ADAM12	10	127755329	Missense_Mutation	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10	6168840	127755329	7779418	300	744										
PWWP2B	170394	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	134219725	134219725	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	aaccgaggctgcaaatgccgCaagacacgtggccccggaaa	12	13	0	1	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	PWWP2B-90	NM_138499	exon2	c.C1721T	p.A574V	ATGCCGCAAGACA	.	159	103	121	2	.	60	16	44	0	0	T	134219725	C	T	134219725	3	4	5	1	0	0	0	0	1	0	0	0	12881	710	25	3	1727	3	PWWP2B	10	134219725	Missense_Mutation	SNP	C	TCGA-OR-A5J5-01A-11D-A29I-10	6464396	134219725	1315022	301	745										
RASSF7	8045	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr11	562158	562158	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	ccacaagagtgtccagtgggCgcccaggccacctgcggaca	13	15	0	1	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	RASSF7-91	NM_001143994	exon3	c.C204T	p.G68G	AGTGGGCGCCCAG	.	173	11	77	0	.	16	16	0	0	0	T	562158	C	T	562158	2	4	5	1	0	0	0	0	0	0	0	1	13126	755	27	1		1	RASSF7	11	562158	Silent	SNP	C	TCGA-OR-A5J5-01A-11D-A29I-10		562158	134444358	302	746										
PHRF1	57661	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	chr11	598468	598468	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	gtgtatcagcgccccctgacGccgcgcactcccgcccgacg	11	20	1	1	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	PHRF1-22	NM_020901	exon9	c.G990A	p.T330T	CCTGACGCCGCGC	.	56	47	8	0	.	11	0	11	0	0	A	598468	G	A	598468	2	1	5	1	0	0	0	0	0	0	0	1	11890	1074	38	1		1	PHRF1	11	598468	Silent	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10	36310	598468	134408048	303	747										
MUC2	4583	bcgsc.ca	37	chr11	1093410	1093410	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	accggcacacagaccccaacCacgacacccatcaccaccac	4	22	1	1	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	MUC2-90	NM_002457	exon30	c.C5229A	p.T1743T	CCCAACCACGACA	.	118	9	126	3	.	0	0	0	0	0	A	1093410	C	A	1093410	2	1	5	1	0	0	0	0	0	0	0	1	10003	581	21	3		3	MUC2	11	1093410	Silent	SNP	C	TCGA-OR-A5J5-01A-11D-A29I-10	494942	1093410	133913106	304	748										
MUC5B	727897	mdanderson.org	37	chr11	1266656	1266656	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	ggccacacccagcaagacccGcacctcgaccctgctgccca	8	21	0	1	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	.	NM_002458	exon31	c.G8546A	p.R2849H	AGACCCGCACCTC	.	114	53	24	1	.	0	0	0	0	0	A	1266656	G	A	1266656	3	1	5	1	0	0	0	0	1	0	0	0	10007	1087	38	1	8677	1	MUC5B	11	1266656	Missense_Mutation	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10	173246	1266656	133739860	305	749			1	2		5	5	9812	N	T_G_C_A	5.99613e-05
MUC5B	727897	bcgsc.ca	37	chr11	1267793	1267793	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	ccttccagcactgagaagcaCagccaccacacccacagcta	6	18	0	1	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	.	NM_002458	exon31	c.C9683T	p.T3228I	GAAGCACAGCCAC	.	292	89	285	4	.	0	0	0	0	0	T	1267793	C	T	1267793	3	4	5	1	0	0	0	0	1	0	0	0	10007	478	17	3	9814	3	MUC5B	11	1267793	Missense_Mutation	SNP	C	TCGA-OR-A5J5-01A-11D-A29I-10	1137	1267793	133738723	306	750			1	2		5	5	9812	N	T_G_C_A	5.99613e-05
MUC5B	727897	broad.mit.edu	37	chr11	1269600	1269600	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	ccctcctccactccagagacTgcccacacctccacagtgct	5	21	0	1	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	.	NM_002458	exon31	c.T11490C	p.T3830T	AGAGACTGCCCAC	.	238	14	325	0	.	0	0	0	0	0	C	1269600	T	C	1269600	2	2	5	1	0	0	0	0	0	0	0	1	10007	1567	55	4		4	MUC5B	11	1269600	Silent	SNP	T	TCGA-OR-A5J5-01A-11D-A29I-10	1807	1269600	133736916	307	751			1	2		5	5	9812	N	T_G_C_A	5.99613e-05
MUC5B	727897	bcgsc.ca	37	chr11	1270826	1270826	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	ggccaccagctctacggccaTgccctcctccactccgggga	10	19	1	0	rs4046507	byfrequency	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	.	NM_002458	exon31	c.T12716C	p.M4239T	CGGCCATGCCCTC	.	373	314	377	78	T|0.976;C|0.024	0	0	0	0	0	C	1270826	T	C	1270826	3	2	5	1	0	0	0	0	1	0	0	0	10007	1464	51	4	12847	4	MUC5B	11	1270826	Missense_Mutation	SNP	T	TCGA-OR-A5J5-01A-11D-A29I-10	1226	1270826	133735690	308	752			1	2		5	5	9812	N	T_G_C_A	5.99613e-05
MUC5B	727897	hgsc.bcm.edu	37	chr11	1276467	1276467	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	acccccaccccatgcccaccAcagccgctctgtgatctgat	6	20	2	2	rs56344012		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	.	NM_002458	exon36	c.A15861G	p.P5287P	CCCACCACAGCCG	.	24	18	6	0	A|0.981;G|0.019	0	0	0	0	0	G	1276467	A	G	1276467	2	3	5	1	0	0	0	0	0	0	0	1	10007	146	6	4		4	MUC5B	11	1276467	Silent	SNP	A	TCGA-OR-A5J5-01A-11D-A29I-10	5641	1276467	133730049	309	753			1	2		5	5	9812	N	T_G_C_A	5.99613e-05
OR51F2	119694	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	4843086	4843086	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	accaatgcccgaattgccaaGattgggatgagcatgttgat	11	8	0	3	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	OR51F2-70	NM_001004753	exon1	c.G471T	p.K157N	TGCCAAGATTGGG	.	148	77	198	1	.	0	0	0	0	0	T	4843086	G	T	4843086	3	4	5	1	0	0	0	0	1	0	0	0	11126	933	33	3	473	3	OR51F2	11	4843086	Missense_Mutation	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10	3566619	4843086	130163430	310	754										
MICAL2	9645	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	12234878	12234878	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	ataaacagaaacagcacagcGgaagccaaggtggaagagat	12	7	0	2	rs138615174		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	MICAL2-92	NM_014632	exon7	c.G768A	p.A256A	CACAGCGGAAGCC	.	101	99	107	0	G|1.000;A|0.000	0	0	0	0	0	A	12234878	G	A	12234878	2	1	5	1	0	0	0	0	0	0	0	1	9598	1103	39	1		1	MICAL2	11	12234878	Silent	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10	7391792	12234878	122771638	311	755										
INSC	387755	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	15262049	15262049	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	cagagaggaacagcagtgacGccgtgcttgtggcctgcctg	15	11	0	2	rs201482506		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	INSC-94	NM_001031853	exon12	c.G1591A	p.A531T	AGTGACGCCGTGC	.	112	51	117	0	G|0.999;A|0.000	0	0	0	0	0	A	15262049	G	A	15262049	3	1	5	1	0	0	0	0	1	0	0	0	7785	1087	38	1	1637	1	INSC	11	15262049	Missense_Mutation	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10	3027171	15262049	119744467	312	756										
KCNJ11	3767	bcgsc.ca	37	chr11	17408630	17408630	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	gagtggtgtgggcactttgaCggtgttgccaaacttggagt	16	6	0	1	rs5215	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	KCNJ11-91	NM_000525	exon1	c.G1009A	p.V337I	CTTTGACGGTGTT	.	255	8	200	1	C|0.272;T|0.728	0	0	0	0	0	T	17408630	C	T	17408630	3	4	5	1	0	0	0	0	1	0	0	0	8066	536	19	1	167	1	KCNJ11	11	17408630	Missense_Mutation	SNP	C	TCGA-OR-A5J5-01A-11D-A29I-10	2146581	17408630	117597886	313	757										
HPS5	11234	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr11	18339355	18339355	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	aatggatccagagattcaaaCtctgcaagaacatggctgta	9	8	2	2	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	HPS5-133	NM_181507	exon2	c.G51A	p.E17E	TTCAAACTCTGCA	.	117	6	166	0	.	0	0	0	0	0	T	18339355	C	T	18339355	2	4	5	1	0	0	0	0	0	0	0	1	7363	564	20	3		3	HPS5	11	18339355	Silent	SNP	C	TCGA-OR-A5J5-01A-11D-A29I-10	930725	18339355	116667161	314	758										
LDHA	3939	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	18422479	18422479	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	ttaatttggtccagcgtaacGtgaacatctttaaattcatc	6	8	2	1	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	LDHA-650	NM_001165414	exon4	c.G427A	p.V143M	CGTAACGTGAACA	.	130	76	191	0	.	2	2	0	0	0	A	18422479	G	A	18422479	3	1	5	1	0	0	0	0	1	0	0	0	8720	1145	40	1	441	1	LDHA	11	18422479	Missense_Mutation	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10	83124	18422479	116584037	315	759										
NAV2	89797	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	20075678	20075678	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	aagatgcaaaagaatggttaCggtcccattctgcaggaggc	12	8	1	2	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	NAV2-96	NM_001244963	exon19	c.C4603T	p.R1535W	TGGTTACGGTCCC	.	86	74	96	0	.	1	0	1	0	0	T	20075678	C	T	20075678	3	4	5	1	0	0	0	0	1	0	0	0	10212	527	19	1	4713	1	NAV2	11	20075678	Missense_Mutation	SNP	C	TCGA-OR-A5J5-01A-11D-A29I-10	1653199	20075678	114930838	316	760										
LRRC4C	57689	ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	40136451	40136451	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	gtccgtgcctcatcctgagaCggttccatagtctctactgt	9	13	2	1	rs116285789	byfrequency	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	LRRC4C-521	NM_001258419	exon7	c.G1392A	p.P464P	CTGAGACGGTTCC	.	183	88	168	1	C|0.996;T|0.004	6	1	5	0	0	T	40136451	C	T	40136451	2	4	5	1	0	0	0	0	0	0	0	1	9035	523	19	1		1	LRRC4C	11	40136451	Silent	SNP	C	TCGA-OR-A5J5-01A-11D-A29I-10	20060773	40136451	94870065	317	761										
SLC35C1	55343	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	45832787	45832787	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	agcaacatgatggtgctgggCggctcctccgcctacacctg	12	14	0	1	rs144046143		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	SLC35C1-90	NM_018389	exon2	c.C996T	p.G332G	GCTGGGCGGCTCC	.	47	45	41	0	C|1.000;T|0.000	7	0	7	0	0	T	45832787	C	T	45832787	2	4	5	1	0	0	0	0	0	0	0	1	14614	755	27	1		1	SLC35C1	11	45832787	Silent	SNP	C	TCGA-OR-A5J5-01A-11D-A29I-10	5696336	45832787	89173729	318	762										
CRY2	1408	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	45892023	45892023	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	tcaaccatgccgagaccagcCggcttaacattgaacgaatg	9	12	1	2	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	CRY2-90	NM_021117	exon9	c.C1552T	p.R518W	ACCAGCCGGCTTA	.	127	20	169	0	.	5	5	0	0	0	T	45892023	C	T	45892023	3	4	5	1	0	0	0	0	1	0	0	0	3910	643	23	1	1622	1	CRY2	11	45892023	Missense_Mutation	SNP	C	TCGA-OR-A5J5-01A-11D-A29I-10	59236	45892023	89114493	319	763										
ARHGAP1	392	broad.mit.edu	37	chr11	46703669	46703669	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	ttgttgtcgctggtcaggccGtggtgcagatacagaagtgt	15	7	1	2	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	ARHGAP1-227	NM_004308	exon5	c.C381T	p.H127H	CAGGCCGTGGTGC	.	221	6	273	0	.	2	2	0	0	0	A	46703669	G	A	46703669	2	1	5	1	0	0	0	0	0	0	0	1	861	1136	40	1		1	ARHGAP1	11	46703669	Silent	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10	811646	46703669	88302847	320	764										
LRP4	4038	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	46914637	46914637	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	atcctcgaggtgcctgagtcGgtccagtagagtttgtcatg	13	9	1	2	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	LRP4-94	NM_002334	exon13	c.C1584T	p.T528T	TGAGTCGGTCCAG	.	66	33	78	0	.	0	0	0	0	0	A	46914637	G	A	46914637	2	1	5	1	0	0	0	0	0	0	0	1	8986	1103	39	1		1	LRP4	11	46914637	Silent	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10	210968	46914637	88091879	321	765										
PACSIN3	29763	hgsc.bcm.edu	37	chr11	47202120	47202120	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	aaagccccccgctgccaggcGcgcacccgctcactgtcctg	10	20	1	0	rs2291445	byfrequency	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	PACSIN3-68	NM_016223	exon5	c.C333T	p.R111R	CCAGGCGCGCACC	.	13	13	0	0	G|0.984;A|0.016	4	0	4	0	0	A	47202120	G	A	47202120	2	1	5	1	0	0	0	0	0	0	0	1	11405	1074	38	1		1	PACSIN3	11	47202120	Silent	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10	287483	47202120	87804396	322	766										
PTPRJ	5795	broad.mit.edu;bcgsc.ca	37	chr11	48161171	48161171	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	agtggagcctggaacaatgcGacccacctggagagctgctc	13	12	0	1	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	PTPRJ-541	NM_002843	exon11	c.G2286A	p.A762A	CAATGCGACCCAC	.	134	6	164	0	.	0	0	0	0	0	A	48161171	G	A	48161171	2	1	5	1	0	0	0	0	0	0	0	1	12839	1045	37	1		1	PTPRJ	11	48161171	Silent	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10	959051	48161171	86845345	323	767										
ZDHHC5	25921	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	57466653	57466653	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	aggctcgggccatgcccctcGtactagttcctcctcagatg	10	15	1	1	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	ZDHHC5-226	NM_015457	exon11	c.G1745A	p.R582H	CCCCTCGTACTAG	.	57	53	57	0	.	8	0	8	0	0	A	57466653	G	A	57466653	3	1	5	1	0	0	0	0	1	0	0	0	17655	1145	40	1	1783	1	ZDHHC5	11	57466653	Missense_Mutation	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10	9305482	57466653	77539863	324	768										
GLYATL1	92292	broad.mit.edu;bcgsc.ca	37	chr11	58723211	58723211	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	ctgcatagaagacctgccagCagcctgtatgctcggcccag	11	14	0	2	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	GLYATL1-91	NM_080661	exon7	c.C713T	p.A238V	TGCCAGCAGCCTG	.	121	5	185	0	.	0	0	0	0	0	T	58723211	C	T	58723211	3	4	5	1	0	0	0	0	1	0	0	0	6500	710	25	3	739	3	GLYATL1	11	58723211	Missense_Mutation	SNP	C	TCGA-OR-A5J5-01A-11D-A29I-10	1256558	58723211	76283305	325	769										
PRPF19	27339	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	60666651	60666651	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	gaggagctcaggagatagtcGccagtggcatgaaggctgag	17	7	1	3	rs147483370	byfrequency	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	PRPF19-91	NM_014502	exon11	c.C954T	p.G318G	ATAGTCGCCAGTG	.	72	64	108	2	G|0.993;A|0.007	16	1	15	0	0	A	60666651	G	A	60666651	2	1	5	1	0	0	0	0	0	0	0	1	12596	1074	38	1		1	PRPF19	11	60666651	Silent	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10	1943440	60666651	74339865	326	770										
AHNAK	79026	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	62298815	62298815	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	gtgcagaaatgtccacattcGctttggacaggttcacatca	9	10	2	1	rs201304148	alternate_allele	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	AHNAK-109	NM_001620	exon5	c.C3074T	p.A1025V	ACATTCGCTTTGG	.	107	16	140	1	G|1.000;C|0.000	2	2	0	0	0	A	62298815	G	A	62298815	3	1	5	1	0	0	0	0	1	0	0	0	414	1087	38	1	14718	1	AHNAK	11	62298815	Missense_Mutation	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10	1632164	62298815	72707701	327	771										
NXF1	10482	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	62561845	62561845	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	aggcgtgggtgcaggcatagCgaaggctctttggatctctt	15	8	2	0	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	NXF1-228	NM_006362	exon19	c.G1645A	p.A549T	GCATAGCGAAGGC	.	132	64	189	0	.	67	34	33	0	0	T	62561845	C	T	62561845	3	4	5	1	0	0	0	0	1	0	0	0	10811	768	27	1	226	1	NXF1	11	62561845	Missense_Mutation	SNP	C	TCGA-OR-A5J5-01A-11D-A29I-10	263030	62561845	72444671	328	772										
SLC22A8	9376	bcgsc.ca	37	chr11	62782278	62782278	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	cctgtggaggcattgtggggCgggcgacagtggtggacagg	21	7	0	0	rs4149180	byfrequency	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	SLC22A8-93	NM_001184732	exon2	c.G153A	p.P51P	GTGGGGCGGGCGA	.	85	6	88	0	C|0.824;T|0.176	0	0	0	0	0	T	62782278	C	T	62782278	2	4	5	1	0	0	0	0	0	0	0	1	14495	755	27	1		1	SLC22A8	11	62782278	Silent	SNP	C	TCGA-OR-A5J5-01A-11D-A29I-10	220433	62782278	72224238	329	773										
C11orf84	144097	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	63594410	63594410	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	ccctgcccagctccccctccGgggctccgcgggacactgga	12	20	0	0	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	C11orf84-90	NM_138471	exon6	c.G945A	p.P315P	CCCTCCGGGGCTC	.	58	25	30	0	.	1	1	0	0	0	A	63594410	G	A	63594410	2	1	5	1	0	0	0	0	0	0	0	1	1671	1103	39	1		1	C11orf84	11	63594410	Silent	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10	812132	63594410	71412106	330	774										
SLC22A12	116085	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	64368361	64368361	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	tggccgcactgcttctgcccGagacccagagcttgccgctg	12	16	1	2	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	SLC22A12-91	NM_144585	exon9	c.G1549A	p.E517K	CTGCCCGAGACCC	.	35	12	20	0	.	0	0	0	0	0	A	64368361	G	A	64368361	3	1	5	1	0	0	0	0	1	0	0	0	14478	1059	37	1	1583	1	SLC22A12	11	64368361	Missense_Mutation	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10	773951	64368361	70638155	331	775										
MEN1	4221	hgsc.bcm.edu	37	chr11	64572093	64572093	+	Frame_Shift_Del	DEL	G	G	-													0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	gacagtcccaggaggcttccGggggggtcctgacactgcac					novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	MEN1-3017	NM_130800	exon10	c.1561delC	p.R521fs	GCTTCCGGGGGGG	.	18	17	2	0	.	0	0	0	0	0	-	64572093	G	-	64572093	7	5	5	1	0	1	0	1	0	0	0	0	9500	1115	39	0	290	0	MEN1	11	64572093	Frame_Shift_Del	DEL	G	TCGA-OR-A5J5-01A-11D-A29I-10	203732	64572093	70434423	332	776										
POLA2	23649	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	65034978	65034978	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	aaagattatcgaaagccaggCatagtacctgcaaggacagt	10	8	0	1	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	POLA2-227	NM_002689	exon3	c.C235T	p.H79Y	GCCAGGCATAGTA	.	58	48	100	0	.	1	1	0	0	0	T	65034978	C	T	65034978	3	4	5	1	0	0	0	0	1	0	0	0	12217	710	25	3	245	3	POLA2	11	65034978	Missense_Mutation	SNP	C	TCGA-OR-A5J5-01A-11D-A29I-10	462885	65034978	69971538	333	777										
PELI3	246330	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr11	66243098	66243098	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	gagtccaacgtgctgcaggaCggctctctcatcgacctgtg	12	13	2	0	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	PELI3-91	NM_145065	exon8	c.C870T	p.D290D	GCAGGACGGCTCT	.	238	19	106	0	.	1	1	0	0	0	T	66243098	C	T	66243098	2	4	5	1	0	0	0	0	0	0	0	1	11752	535	19	1		1	PELI3	11	66243098	Silent	SNP	C	TCGA-OR-A5J5-01A-11D-A29I-10	1208120	66243098	68763418	334	778										
NUMA1	4926	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	71718457	71718457	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	tctccagggacgctggtgccGtctggctgggtacgaggcag	17	11	2	0	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	NUMA1-633	NM_006185	exon21	c.C5241T	p.D1747D	GGTGCCGTCTGGC	.	54	52	68	0	.	51	5	46	0	0	A	71718457	G	A	71718457	2	1	5	1	0	0	0	0	0	0	0	1	10779	1136	40	1		1	NUMA1	11	71718457	Silent	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10	5475359	71718457	63288059	335	779										
PHOX2A	401	hgsc.bcm.edu	37	chr11	71951242	71951242	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	ccggcggttctggaaccagaCctgcgggcacaggggccagt	16	13	1	1	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	PHOX2A-90	NM_005169	exon3	c.G406A	p.V136I	ACCAGACCTGCGG	.	8	6	0	0	.	0	0	0	0	0	T	71951242	C	T	71951242	3	4	5	1	0	0	0	0	1	0	0	0	11887	521	18	3	452	3	PHOX2A	11	71951242	Missense_Mutation	SNP	C	TCGA-OR-A5J5-01A-11D-A29I-10	232785	71951242	63055274	336	780										
RPS3	6188	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	75115215	75115215	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	gagaccctgttaactactacGttgacactgctgtgcgccac	9	13	0	2	rs11546214	alternate_allele	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	RPS3-90	NM_001260506	exon5	c.G550A	p.V184I	TACTACGTTGACA	.	179	159	175	0	.	925	70	855	0	0	A	75115215	G	A	75115215	3	1	5	1	0	0	0	0	1	0	0	0	13678	1145	40	1	520	1	RPS3	11	75115215	Missense_Mutation	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10	3163973	75115215	59891301	337	781										
MYO7A	4647	bcgsc.ca	37	chr11	76912590	76912590	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	atgaactcgggctgggccaaCggcatcaatgagaggaccaa	13	10	1	2	rs80033599	bycluster;byfrequency;by1000genomes	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	MYO7A-138	NM_000260	exon36	c.C4950T	p.N1650N	GGCCAACGGCATC	.	233	9	228	0	C|0.986;T|0.014	0	0	0	0	0	T	76912590	C	T	76912590	2	4	5	1	0	0	0	0	0	0	0	1	10110	535	19	1		1	MYO7A	11	76912590	Silent	SNP	C	TCGA-OR-A5J5-01A-11D-A29I-10	1797375	76912590	58093926	338	782										
INTS4	92105	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	77614597	77614597	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	taagcttacctgtttcgctgCtgctgaggccaaatcactct	8	12	2	1	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	INTS4-92	NM_033547	exon17	c.G2086A	p.A696T	TCGCTGCTGCTGA	.	279	101	303	3	.	0	0	0	0	0	T	77614597	C	T	77614597	3	4	5	1	0	0	0	0	1	0	0	0	7801	797	28	3	833	3	INTS4	11	77614597	Missense_Mutation	SNP	C	TCGA-OR-A5J5-01A-11D-A29I-10	702007	77614597	57391919	339	783										
KCTD21	283219	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	77885166	77885166	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	gaggtgctgaagatgttggcGttgaagacctccatgctgga	15	7	0	4	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	KCTD21-69	NM_001029859	exon2	c.C435T	p.N145N	GTTGGCGTTGAAG	.	81	68	131	0	.	0	0	0	0	0	A	77885166	G	A	77885166	2	1	5	1	0	0	0	0	0	0	0	1	8130	1136	40	1		1	KCTD21	11	77885166	Silent	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10	270569	77885166	57121350	340	784										
CCDC83	220047	broad.mit.edu	37	chr11	85597253	85597253	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	ttttcaacagatatgcgcatGcaaataagtaatgctgagaa	8	6	1	2	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	CCDC83-91	NM_173556	exon5	c.G354A	p.M118I	GCGCATGCAAATA	.	77	5	107	0	.	0	0	0	0	0	A	85597253	G	A	85597253	3	1	5	1	0	0	0	0	1	0	0	0	2863	1319	46	3	368	3	CCDC83	11	85597253	Missense_Mutation	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10	7712087	85597253	49409263	341	785										
SLC36A4	120103	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	92881964	92881964	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	ctgctgctcacagctccaacGaaggaaatcacaatgtctaa	7	12	3	0	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	SLC36A4-93	NM_152313	exon11	c.C1254T	p.F418F	TCCAACGAAGGAA	.	150	141	207	2	.	1	0	1	0	0	A	92881964	G	A	92881964	2	1	5	1	0	0	0	0	0	0	0	1	14631	1049	37	1		1	SLC36A4	11	92881964	Silent	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10	7284711	92881964	42124552	342	786										
HEPHL1	341208	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr11	93826774	93826774	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	atttgtggagatcaaagcccGaccaccacgagaggagcact	11	11	1	2	rs200108606		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	HEPHL1-71	NM_001098672	exon13	c.G2402A	p.R801Q	AAGCCCGACCACC	.	175	9	226	0	G|0.999;A|0.000	0	0	0	0	0	A	93826774	G	A	93826774	3	1	5	1	0	0	0	0	1	0	0	0	7076	1058	37	1	2452	1	HEPHL1	11	93826774	Missense_Mutation	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10	944810	93826774	41179742	343	787										
FUT4	2526	hgsc.bcm.edu	37	chr11	94278062	94278062	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	actggcccccgccctggggcAtccaggcgcacactgccgag	13	18	0	0	rs2230273	byfrequency	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	FUT4-91	NM_002033	exon1	c.A763G	p.I255V	TGGGGCATCCAGG	.	18	16	0	0	A|0.910;G|0.090	0	0	0	0	0	G	94278062	A	G	94278062	3	3	5	1	0	0	0	0	1	0	0	0	6125	217	8	4	765	4	FUT4	11	94278062	Missense_Mutation	SNP	A	TCGA-OR-A5J5-01A-11D-A29I-10	451288	94278062	40728454	344	788										
POU2AF1	5450	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	111229514	111229514	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	cacacacacaaactctcaccGccgtaggtgcaggtgctgcc	9	16	1	0	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	POU2AF1-658	NM_006235	exon2	c.C146T	p.A49V	CTCACCGCCGTAG	.	74	35	51	0	.	0	0	0	0	0	A	111229514	G	A	111229514	3	1	5	1	0	0	0	0	1	0	0	0	12299	1101	38	1	640	1	POU2AF1	11	111229514	Missense_Mutation	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10	16951452	111229514	23777002	345	789										
HTR3A	3359	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	113860305	113860305	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	ctggcggtgtgtgggctgctGcaggagctgtcctccatccg	16	12	0	0	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	HTR3A-90	NM_213621	exon8	c.G1371T	p.L457L	GCTGCTGCAGGAG	.	49	5	27	0	.	0	0	0	0	0	T	113860305	G	T	113860305	2	4	5	1	0	0	0	0	0	0	0	1	7465	1306	46	3		3	HTR3A	11	113860305	Silent	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10	2630791	113860305	21146211	346	790										
TMPRSS4	56649	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr11	117984057	117984057	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	gcagcttcccatccctggctGtggccaagatcatcatcatt	8	14	3	1	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	TMPRSS4-90	NM_019894	exon9	c.G817A	p.V273M	CTGGCTGTGGCCA	.	174	10	233	0	.	0	0	0	0	0	A	117984057	G	A	117984057	3	1	5	1	0	0	0	0	1	0	0	0	16286	1377	48	3	851	3	TMPRSS4	11	117984057	Missense_Mutation	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10	4123752	117984057	17022459	347	791										
PHLDB1	23187	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	118495742	118495742	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	gcatgattccagcagggggcCgagcccctgggcccccctac	13	17	0	1	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	PHLDB1-90	NM_001144758	exon5	c.C448T	p.R150X	GGGGGCCGAGCCC	.	58	24	82	0	.	1	1	0	0	0	T	118495742	C	T	118495742	4	4	5	1	0	0	0	0	0	1	0	0	11880	644	23	1	462	1	PHLDB1	11	118495742	Nonsense_Mutation	SNP	C	TCGA-OR-A5J5-01A-11D-A29I-10	511685	118495742	16510774	348	792										
DDX6	1656	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	118635947	118635947	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	aagcctcattatgtcatctcGtaaattggttcctcctgtgg	8	10	3	0	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	DDX6-659	NM_004397	exon6	c.C616T	p.R206X	CATCTCGTAAATT	.	91	36	126	0	.	2	1	1	0	0	A	118635947	G	A	118635947	4	1	5	1	0	0	0	0	0	1	0	0	4383	1153	40	1	867	1	DDX6	11	118635947	Nonsense_Mutation	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10	140205	118635947	16370569	349	793										
CXCR5	643	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	118764716	118764716	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	acctggccattgtccacgccGtccatgcctaccgccaccgc	8	20	0	0	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	CXCR5-721	NM_001716	exon2	c.G463A	p.V155I	CACGCCGTCCATG	.	125	62	58	0	.	0	0	0	0	0	A	118764716	G	A	118764716	3	1	5	1	0	0	0	0	1	0	0	0	4100	1145	40	1	469	1	CXCR5	11	118764716	Missense_Mutation	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10	128769	118764716	16241800	350	794										
POU2F3	25833	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr11	120175859	120175859	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	ccgatgagcccagtgacctcGaggagctggagaagtttgcc	14	11	0	3	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	POU2F3-92	NM_001244682	exon7	c.G571A	p.E191K	GACCTCGAGGAGC	.	111	6	117	0	.	0	0	0	0	0	A	120175859	G	A	120175859	3	1	5	1	0	0	0	0	1	0	0	0	12302	1059	37	1	591	1	POU2F3	11	120175859	Missense_Mutation	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10	1411143	120175859	14830657	351	795										
GRAMD1B	57476	broad.mit.edu	37	chr11	123483504	123483504	+	Frame_Shift_Del	DEL	G	G	-													0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	gcgctatcgaaaacagccctGggggttagtgaaaacgttca					novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	GRAMD1B-69	NM_020716	exon14	c.1526delG	p.W509fs	AGCCCTGGGGGTT	.	118	10	133	0	.	0	0	0	0	0	-	123483504	G	-	123483504	7	5	5	1	0	1	0	1	0	0	0	0	6769	1357	47	0	1580	0	GRAMD1B	11	123483504	Frame_Shift_Del	DEL	G	TCGA-OR-A5J5-01A-11D-A29I-10	3307645	123483504	11523012	352	796										
VWA5A	4013	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	123993793	123993793	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	gggaagtatgcagagccccaTgagtagccaggatacatctc	12	10	1	2	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	VWA5A-92	NM_014622	exon7	c.T887C	p.M296T	GCCCCATGAGTAG	.	36	34	39	0	.	2	0	2	0	0	C	123993793	T	C	123993793	3	2	5	1	0	0	0	0	1	0	0	0	17280	1464	51	4	909	4	VWA5A	11	123993793	Missense_Mutation	SNP	T	TCGA-OR-A5J5-01A-11D-A29I-10	510289	123993793	11012723	353	797										
OR8D2	283160	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	124189576	124189576	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	cacaaaaataatgactgaccGtatgagacctacagaatgac	7	9	0	5	rs151287996		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	OR8D2-113	NM_001002918	exon1	c.C518T	p.T173M	CTGACCGTATGAG	.	74	62	113	0	G|1.000;A|0.000	0	0	0	0	0	A	124189576	G	A	124189576	3	1	5	1	0	0	0	0	1	0	0	0	11261	1145	40	1	420	1	OR8D2	11	124189576	Missense_Mutation	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10	195783	124189576	10816940	354	798										
PKNOX2	63876	broad.mit.edu	37	chr11	125255595	125255595	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	agcacaaacccttcttcagcGatgacccagaactggacaat	7	13	2	2	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	PKNOX2-93	NM_022062	exon6	c.G376A	p.D126N	TTCAGCGATGACC	.	144	4	171	1	.	0	0	0	0	0	A	125255595	G	A	125255595	3	1	5	1	0	0	0	0	1	0	0	0	12012	1058	37	1	386	1	PKNOX2	11	125255595	Missense_Mutation	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10	1066019	125255595	9750921	355	799										
WNT5B	81029	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	1742040	1742040	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	aattgcagcacagcggacaaCgcatctgtctttgggagagt	12	9	2	1	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	WNT5B-562	NM_032642	exon3	c.C297T	p.N99N	GGACAACGCATCT	.	154	34	86	0	.	0	0	0	0	0	T	1742040	C	T	1742040	2	4	5	1	0	0	0	0	0	0	0	1	17430	535	19	1		1	WNT5B	12	1742040	Silent	SNP	C	TCGA-OR-A5J5-01A-11D-A29I-10		1742040	132109855	356	800										
CACNA2D4	93589	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr12	1988971	1988971	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	tccaggagcggccactcaccGtttcgttcttcttgctgaag	10	13	3	1	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	CACNA2D4-23	NM_172364	exon14	c.C1562T	p.T521M	CTCACCGTTTCGT	.	151	10	87	0	.	0	0	0	0	0	A	1988971	G	A	1988971	3	1	5	1	0	0	0	0	1	0	0	0	2557	1159	40	1	1951	1	CACNA2D4	12	1988971	Missense_Mutation	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10	246931	1988971	131862924	357	801										
CACNA2D4	93589	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	2019113	2019113	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	gtggttcaggtcggcctcctCggcagcttccaccagattct	11	14	2	1	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	CACNA2D4-23	NM_172364	exon4	c.G445A	p.E149K	CCTCCTCGGCAGC	.	118	60	76	0	.	0	0	0	0	0	T	2019113	C	T	2019113	3	4	5	1	0	0	0	0	1	0	0	0	2557	893	31	1	3108	1	CACNA2D4	12	2019113	Missense_Mutation	SNP	C	TCGA-OR-A5J5-01A-11D-A29I-10	30142	2019113	131832782	358	802										
TSPAN9	10867	bcgsc.ca	37	chr12	3390495	3390495	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	accacgcctttgtggagaacGgtgaggctggggatggaccg	17	9	0	2	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	TSPAN9-91	NM_006675	exon7	c.G564A	p.T188T	GAGAACGGTGAGG	.	129	6	41	0	.	0	0	0	0	0	A	3390495	G	A	3390495	2	1	5	1	0	0	0	0	0	0	0	1	16692	1130	39	1		1	TSPAN9	12	3390495	Silent	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10	1371382	3390495	130461400	359	803										
ANO2	57101	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	5724430	5724430	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	agaaagctttgaggatcaggCgctcttcaaaagtctgttct	10	8	5	2	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	ANO2-139	NM_020373	exon18	c.G1850A	p.R617H	ATCAGGCGCTCTT	.	187	34	148	1	.	0	0	0	0	0	T	5724430	C	T	5724430	3	4	5	1	0	0	0	0	1	0	0	0	697	768	27	1	1182	1	ANO2	12	5724430	Missense_Mutation	SNP	C	TCGA-OR-A5J5-01A-11D-A29I-10	2333935	5724430	128127465	360	804										
GPR162	27239	hgsc.bcm.edu;broad.mit.edu	37	chr12	6934685	6934685	+	Frame_Shift_Del	DEL	C	C	-													0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	ccctcaagtcggactcggcgCccccctggatggtgctggct					novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	GPR162-92	NM_019858	exon3	c.904delC	p.P302fs	TCGGCGCCCCCCT	.	103	25	24	0	.	0	0	0	0	0	-	6934685	C	-	6934685	7	5	5	1	0	1	0	1	0	0	0	0	6686	739	26	0	929	0	GPR162	12	6934685	Frame_Shift_Del	DEL	C	TCGA-OR-A5J5-01A-11D-A29I-10	1210255	6934685	126917210	361	805										
C1R	715	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	7187965	7187965	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	gccacccagcgatcagtgttCgggtcccttactgcaaaaac	9	14	1	0	rs147540938	by1000genomes	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	.	.	.	.	.	AGTGTTCGGGTCC	.	203	52	157	0	C|0.999;T|0.001	979	701	278	0	0	T	7187965	C	T	7187965	2	4	5	1	0	0	0	0	0	0	0	1	1978	871	31	1		1	C1R	12	7187965	Silent	SNP	C	TCGA-OR-A5J5-01A-11D-A29I-10	253280	7187965	126663930	362	806										
CLEC4A	50856	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr12	8290774	8290774	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	gcccagtgatcccaatgagcGctgcgttgtgctaaattttc	10	11	0	2	rs200191238		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	CLEC4A-90	NM_016184	exon6	c.G605A	p.R202H	ATGAGCGCTGCGT	.	338	21	266	0	G|0.999;A|0.000	3	3	0	0	0	A	8290774	G	A	8290774	3	1	5	1	0	0	0	0	1	0	0	0	3518	1087	38	1	627	1	CLEC4A	12	8290774	Missense_Mutation	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10	1102809	8290774	125561121	363	807										
DDX11	1663	broad.mit.edu;bcgsc.ca	37	chr12	31254784	31254784	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	tagatggacgaggtgggtcgCattctctgtaacctgtgcgg	15	8	1	1	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	DDX11-229	NM_030653	exon21	c.C2070T	p.R690R	GGGTCGCATTCTC	.	269	10	150	0	.	12	12	0	0	0	T	31254784	C	T	31254784	2	4	5	1	0	0	0	0	0	0	0	1	4349	697	25	3		3	DDX11	12	31254784	Silent	SNP	C	TCGA-OR-A5J5-01A-11D-A29I-10	22964010	31254784	102597111	364	808										
SLC2A13	114134	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	40422282	40422282	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	agccaaaaaactgtataaccGccggaactgctgcaagtccc	8	13	0	0	rs200980396	alternate_allele	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	SLC2A13-515	NM_052885	exon3	c.C746T	p.A249V	ATAACCGCCGGAA	.	42	26	27	0	.	0	0	0	0	0	A	40422282	G	A	40422282	3	1	5	1	0	0	0	0	1	0	0	0	14577	1087	38	1	1232	1	SLC2A13	12	40422282	Missense_Mutation	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10	9167498	40422282	93429613	365	809										
VDR	7421	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	48249477	48249477	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	gctgtaactgaccaggtcagCcaggtggggcagcatggaga	16	9	1	2	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	VDR-188	NM_001017536	exon7	c.G841A	p.A281T	GGTCAGCCAGGTG	.	454	223	299	0	.	0	0	0	0	0	T	48249477	C	T	48249477	3	4	5	1	0	0	0	0	1	0	0	0	17187	739	26	3	608	3	VDR	12	48249477	Missense_Mutation	SNP	C	TCGA-OR-A5J5-01A-11D-A29I-10	7827195	48249477	85602418	366	810										
OR8S1	341568	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	48921823	48921823	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	gagctgagcattccggtcacGcctcaaccccaaggggcctg	12	15	2	1	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	OR8S1-69	NM_001005203	exon2	c.G1017A	p.T339T	GGTCACGCCTCAA	.	60	31	20	0	.	0	0	0	0	0	A	48921823	G	A	48921823	2	1	5	1	0	0	0	0	0	0	0	1	11275	1074	38	1		1	OR8S1	12	48921823	Silent	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10	672346	48921823	84930072	367	811										
WNT1	7471	hgsc.bcm.edu	37	chr12	49374348	49374348	+	Frame_Shift_Del	DEL	G	G	-													0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	cgggggccccgactggcactGggggggctgcagcgacaaca					novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	WNT1-1083	NM_005430	exon3	c.500delG	p.W167fs	GGCACTGGGGGGG	.	110	33	4	0	.	0	0	0	0	0	-	49374348	G	-	49374348	7	5	5	1	0	1	0	1	0	0	0	0	17419	1357	47	0	510	0	WNT1	12	49374348	Frame_Shift_Del	DEL	G	TCGA-OR-A5J5-01A-11D-A29I-10	452525	49374348	84477547	368	812										
MLL2	8085	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr12	49434492	49434492	+	Frame_Shift_Del	DEL	G	G	-													0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	aaggtgccaaagcctgggcaGggggtggctcctggggcctt					novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	MLL2-612	NM_003482	exon31	c.7061delC	p.P2354fs	TGGGCAGGGGGTG	.	109	52	47	0	.	0	0	0	0	0	-	49434492	G	-	49434492	7	5	5	1	0	1	0	1	0	0	0	0	9649	1000	35	0	9648	0	MLL2	12	49434492	Frame_Shift_Del	DEL	G	TCGA-OR-A5J5-01A-11D-A29I-10	60144	49434492	84417403	369	813										
KCNH3	23416	hgsc.bcm.edu	37	chr12	49943990	49943990	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	ggcactgtctctggccctgcGgcccgccttctgcacgccgg	13	18	2	0	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	KCNH3-90	NM_012284	exon10	c.G1796A	p.R599Q	CCCTGCGGCCCGC	.	68	21	6	0	.	9	9	0	0	0	A	49943990	G	A	49943990	3	1	5	1	0	0	0	0	1	0	0	0	8054	1116	39	1	1834	1	KCNH3	12	49943990	Missense_Mutation	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10	509498	49943990	83907905	370	814										
GPR84	53831	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	54757424	54757424	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	cagagaagggctgaaggagcGtgcagtagaggagatcagcc	17	7	1	4	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	GPR84-523	NM_020370	exon2	c.C212T	p.T71M	AGGAGCGTGCAGT	.	527	258	307	0	.	0	0	0	0	0	A	54757424	G	A	54757424	3	1	5	1	0	0	0	0	1	0	0	0	6734	1145	40	1	982	1	GPR84	12	54757424	Missense_Mutation	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10	4813434	54757424	79094471	371	815										
PA2G4	5036	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	56504465	56504465	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	aggcgttttgatgccatgccGtttactttaaggtactaagc	10	8	0	1	rs145895424		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	PA2G4-68	NM_006191	exon9	c.G831A	p.P277P	CATGCCGTTTACT	.	162	79	120	1	G|1.000;A|0.000	2	2	0	0	0	A	56504465	G	A	56504465	2	1	5	1	0	0	0	0	0	0	0	1	11390	1132	40	1		1	PA2G4	12	56504465	Silent	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10	1747041	56504465	77347430	372	816										
MYO1A	4640	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	57432600	57432600	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	cctgccatttcaccttgcccGcatagtggcagatgcggaag	11	13	1	1	rs141039063		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	MYO1A-231	NM_005379	exon16	c.C1526T	p.A509V	TTGCCCGCATAGT	.	289	65	170	2	G|1.000;A|0.000	0	0	0	0	0	A	57432600	G	A	57432600	3	1	5	1	0	0	0	0	1	0	0	0	10096	1087	38	1	1657	1	MYO1A	12	57432600	Missense_Mutation	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10	928135	57432600	76419295	373	817										
SHMT2	6472	ucsc.edu;bcgsc.ca	37	chr12	57624758	57624758	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	ggagaaggacaggcagtgtcGtggcctggagctcattgcct	16	9	1	1	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	SHMT2-91	NM_005412	exon2	c.G206A	p.R69H	AGTGTCGTGGCCT	.	565	277	397	4	.	3	3	0	0	0	A	57624758	G	A	57624758	3	1	5	1	0	0	0	0	1	0	0	0	14321	1145	40	1	212	1	SHMT2	12	57624758	Missense_Mutation	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10	192158	57624758	76227137	374	818										
KCNC2	3747	ucsc.edu;bcgsc.ca	37	chr12	75444415	75444415	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	tcagcactccagccagagcaCacagggctcccaccagcatg	9	17	1	1	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	KCNC2-224	NM_139137	exon3	c.G1370A	p.C457Y	AGAGCACACAGGG	.	150	58	110	2	.	0	0	0	0	0	T	75444415	C	T	75444415	3	4	5	1	0	0	0	0	1	0	0	0	8036	478	17	3	624	3	KCNC2	12	75444415	Missense_Mutation	SNP	C	TCGA-OR-A5J5-01A-11D-A29I-10	17819657	75444415	58407480	375	819										
TMTC2	160335	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	83290288	83290288	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	ttatgtcaaagtccaaaagcGgttcctcaagagcttgattt	8	8	2	2	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	TMTC2-92	NM_152588	exon3	c.G1346A	p.R449Q	AAAAGCGGTTCCT	.	96	42	83	0	.	1	1	0	0	0	A	83290288	G	A	83290288	3	1	5	1	0	0	0	0	1	0	0	0	16298	1116	39	1	1356	1	TMTC2	12	83290288	Missense_Mutation	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10	7845873	83290288	50561607	376	820										
LRRIQ1	84125	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	85554403	85554403	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	ttgtttagattccactgtgcGtctagccttattcaaaaaca	6	9	2	1	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	LRRIQ1-95	NM_001079910	exon24	c.G4733A	p.R1578H	CTGTGCGTCTAGC	.	108	42	92	0	.	0	0	0	0	0	A	85554403	G	A	85554403	3	1	5	1	0	0	0	0	1	0	0	0	9056	1145	40	1	4827	1	LRRIQ1	12	85554403	Missense_Mutation	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10	2264115	85554403	48297492	377	821										
SCYL2	55681	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	100732792	100732792	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	ctcaaggttctccaactatgGgcagttcagtaatggggaca	11	9	3	0	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	SCYL2-336	NM_017988	exon18	c.G2632T	p.G878C	ACTATGGGCAGTT	.	266	22	172	0	.	40	36	4	0	0	T	100732792	G	T	100732792	3	4	5	1	0	0	0	0	1	0	0	0	13983	1232	43	3	2698	3	SCYL2	12	100732792	Missense_Mutation	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10	15178389	100732792	33119103	378	822										
BTBD11	121551	hgsc.bcm.edu	37	chr12	107713511	107713511	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	ccggagctgcagtggccctgGgtcaggctcgggctccggcc	17	15	1	0	rs961498	byfrequency	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	BTBD11-93	NM_001018072	exon1	c.G794C	p.G265A	GCCCTGGGTCAGG	.	7	7	0	0	G|0.588;C|0.412	0	0	0	0	0	C	107713511	G	C	107713511	3	2	5	1	0	0	0	0	1	0	0	0	1542	1232	43	3	796	3	BTBD11	12	107713511	Missense_Mutation	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10	6980719	107713511	26138384	379	823										
ACACB	32	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	109613959	109613959	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	gtttgtcctttgcacccaggCagcagaaagaattggttttc	10	9	0	2	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	ACACB-98	NM_001093	exon8	c.C1328T	p.A443V	CCCAGGCAGCAGA	.	276	44	205	0	.	0	0	0	0	0	T	109613959	C	T	109613959	3	4	5	1	0	0	0	0	1	0	0	0	107	724	25	3	1358	3	ACACB	12	109613959	Missense_Mutation	SNP	C	TCGA-OR-A5J5-01A-11D-A29I-10	1900448	109613959	24237936	380	824										
OAS2	4939	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	113442751	113442751	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	ttccttagggaggatcaaccGccaaaggcacagctctgaag	11	11	2	1	rs143746502		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	OAS2-91	NM_002535	exon7	c.G1192A	p.A398T	TCAACCGCCAAAG	.	130	66	86	0	G|0.999;A|0.000	0	0	0	0	0	A	113442751	G	A	113442751	3	1	5	1	0	0	0	0	1	0	0	0	10829	1087	38	1	1289	1	OAS2	12	113442751	Missense_Mutation	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10	3828792	113442751	20409144	381	825										
OAS2	4939	broad.mit.edu;bcgsc.ca	37	chr12	113442852	113442852	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	aaaaacgagcggcacaaaatCgtcaaggaaatccatgaaca	8	9	1	1	rs186647423	alternate_allele	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	OAS2-91	NM_002535	exon7	c.C1293T	p.I431I	CAAAATCGTCAAG	.	257	12	177	1	C|0.999;A|0.000	0	0	0	0	0	T	113442852	C	T	113442852	2	4	5	1	0	0	0	0	0	0	0	1	10829	874	31	1		1	OAS2	12	113442852	Silent	SNP	C	TCGA-OR-A5J5-01A-11D-A29I-10	101	113442852	20409043	382	826										
MAP1LC3B2	643246	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	117013775	117013775	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	cggagaagaccttcaagcagCggcgcaccttcgaacaaaga	11	12	1	3	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	MAP1LC3B2-68	NM_001085481	exon2	c.C28T	p.R10W	AAGCAGCGGCGCA	.	247	52	153	0	.	1	0	1	0	0	T	117013775	C	T	117013775	3	4	5	1	0	0	0	0	1	0	0	0	9260	759	27	1	30	1	MAP1LC3B2	12	117013775	Missense_Mutation	SNP	C	TCGA-OR-A5J5-01A-11D-A29I-10	3570923	117013775	16838120	383	827										
C12orf49	79794	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	117160928	117160928	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	agttgcggcactgattgctcGgacgactgctattgcccaag	12	11	0	1	rs149801903		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	C12orf49-91	NM_024738	exon2	c.C212T	p.P71L	TTGCTCGGACGAC	.	366	85	191	0	G|1.000;A|0.000	0	0	0	0	0	A	117160928	G	A	117160928	3	1	5	1	0	0	0	0	1	0	0	0	1697	1116	39	1	421	1	C12orf49	12	117160928	Missense_Mutation	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10	147153	117160928	16690967	384	828										
CAMKK2	10645	hgsc.bcm.edu	37	chr12	121711941	121711941	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	aggactgcggggagctgacgGgtgagtagggcagggacggg	23	6	0	2	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	CAMKK2-450	NM_153500	exon2	c.C389A	p.P130H	CTGACGGGTGAGT	.	198	80	1	0	.	1	0	1	0	0	T	121711941	G	T	121711941	3	4	5	1	0	0	0	0	1	0	0	0	2613	1232	43	3	1451	3	CAMKK2	12	121711941	Missense_Mutation	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10	4551013	121711941	12139954	385	829										
RHOF	54509	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr12	122219074	122219074	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	tgttctggtaggacaggggcCgcagccggtcatagtcttct	14	10	4	0	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	RHOF-660	NM_019034	exon3	c.G251A	p.R84Q	AGGGGCCGCAGCC	.	247	52	109	0	.	27	25	2	0	0	T	122219074	C	T	122219074	3	4	5	1	0	0	0	0	1	0	0	0	13373	652	23	1	396	1	RHOF	12	122219074	Missense_Mutation	SNP	C	TCGA-OR-A5J5-01A-11D-A29I-10	507133	122219074	11632821	386	830										
HIP1R	9026	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr12	123339931	123339932	+	Frame_Shift_Ins	INS	-	-	C													0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	tcattgagatcagcacagggINSccccccgcgggggagccagt					novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	HIP1R-91	NM_003959	exon11	c.972_973insC	p.G324fs	CACAGGGCCCCCC	.	171	60	40	0	.	0	0	0	0	0	C	123339932	-	C	123339931	7	5	5	1	0	1	1	0	0	0	0	0	7136	1190	42	0	1014	0	HIP1R	12	123339931	Frame_Shift_Ins	INS	-	TCGA-OR-A5J5-01A-11D-A29I-10	1120857	123339931	10511964	387	831										
SNRNP35	11066	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	123950559	123950559	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	ggcaactgagatttgggggaCgggaccggccttttcgaaaa	15	8	0	1	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	SNRNP35-68	NM_180699	exon2	c.C487T	p.R163W	GGGGGACGGGACC	.	55	7	35	0	.	50	43	7	0	0	T	123950559	C	T	123950559	3	4	5	1	0	0	0	0	1	0	0	0	14890	527	19	1	493	1	SNRNP35	12	123950559	Missense_Mutation	SNP	C	TCGA-OR-A5J5-01A-11D-A29I-10	610628	123950559	9901336	388	832										
DNAH10	196385	broad.mit.edu	37	chr12	124417938	124417938	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	tgcacatccctgagtcctacCtcacggcgctggtgcaggcc	11	16	1	1	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	DNAH10-95	NM_207437	exon76	c.C13003T	p.L4335F	TCCTACCTCACGG	.	225	5	83	0	.	0	0	0	0	0	T	124417938	C	T	124417938	3	4	5	1	0	0	0	0	1	0	0	0	4609	681	24	3	13305	3	DNAH10	12	124417938	Missense_Mutation	SNP	C	TCGA-OR-A5J5-01A-11D-A29I-10	467379	124417938	9433957	389	833										
NCOR2	9612	hgsc.bcm.edu	37	chr12	124829305	124829305	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	gcgcgcaatggagccccccgAgctgctggcggtccctggcc	15	17	0	0	rs75902515		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	NCOR2-229	NM_006312	exon34	c.T4552A	p.S1518T	CCCCCGAGCTGCT	.	19	7	0	0	.	20	8	12	0	0	T	124829305	A	T	124829305	3	4	5	1	0	0	0	0	1	0	0	0	10265	304	11	5	3056	5	NCOR2	12	124829305	Missense_Mutation	SNP	A	TCGA-OR-A5J5-01A-11D-A29I-10	411367	124829305	9022590	390	834										
TMEM132D	121256	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	130184571	130184571	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	cgatgtcactgtggcctgtcCggatcccattgcttctcctc	9	15	2	0	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	TMEM132D-106	NM_133448	exon2	c.G752T	p.R251L	CCTGTCCGGATCC	.	134	59	88	0	.	0	0	0	0	0	A	130184571	C	A	130184571	3	1	5	1	0	0	0	0	1	0	0	0	16084	652	23	2	2579	2	TMEM132D	12	130184571	Missense_Mutation	SNP	C	TCGA-OR-A5J5-01A-11D-A29I-10	5355266	130184571	3667324	391	835										
POLE	5426	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	133249853	133249853	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	cagcatctgacacagaatacGtggccagagtctgaggagag	13	9	2	5	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	POLE-233	NM_006231	exon14	c.C1370T	p.T457M	GAATACGTGGCCA	.	278	66	217	1	.	0	0	0	0	0	A	133249853	G	A	133249853	3	1	5	1	0	0	0	0	1	0	0	0	12225	1145	40	1	5634	1	POLE	12	133249853	Missense_Mutation	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10	3065282	133249853	602042	392	836										
SPATA13	221178	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr13	24825999	24825999	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	cggcagatgagagcatccaaCggtgagtctcagagtccctt	12	11	1	4	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	SPATA13-229	NM_001166271	exon4	c.C2163T	p.N721N	ATCCAACGGTGAG	.	63	52	65	0	.	0	0	0	0	0	T	24825999	C	T	24825999	2	4	5	1	0	0	0	0	0	0	0	1	15037	550	19	1		1	SPATA13	13	24825999	Silent	SNP	C	TCGA-OR-A5J5-01A-11D-A29I-10		24825999	90343879	393	837										
TSC22D1	8848	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr13	45147753	45147753	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	agagggcaaagaactaactgCaggcaactgctgtgaaacaa	11	8	0	3	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	TSC22D1-90	NM_183422	exon1	c.G2458A	p.A820T	TAACTGCAGGCAA	.	103	9	131	0	.	4	4	0	0	0	T	45147753	C	T	45147753	3	4	5	1	0	0	0	0	1	0	0	0	16645	710	25	3	904	3	TSC22D1	13	45147753	Missense_Mutation	SNP	C	TCGA-OR-A5J5-01A-11D-A29I-10	20321754	45147753	70022125	394	838										
ABCC4	10257	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr13	95840746	95840746	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	ccgaccacagctaacaattcGccaggtctgacagtaaagga	9	12	1	1	rs150945397		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	ABCC4-515	NM_005845	exon10	c.C1314T	p.G438G	CAATTCGCCAGGT	.	106	94	138	0	G|1.000;A|0.000	0	0	0	0	0	A	95840746	G	A	95840746	2	1	5	1	0	0	0	0	0	0	0	1	55	1074	38	1		1	ABCC4	13	95840746	Silent	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10	50692993	95840746	19329132	395	839										
ING1	3621	bcgsc.ca	37	chr13	111371922	111371922	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	aacaacgagaaccgtgagaaCgcgtccagcaaccacgacca	9	14	0	2	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	ING1-515	NM_005537	exon2	c.C912T	p.N304N	TGAGAACGCGTCC	.	282	255	82	2	.	16	1	15	0	0	T	111371922	C	T	111371922	2	4	5	1	0	0	0	0	0	0	0	1	7756	535	19	1		1	ING1	13	111371922	Silent	SNP	C	TCGA-OR-A5J5-01A-11D-A29I-10	15531176	111371922	3797956	396	840										
ARHGEF7	8874	broad.mit.edu	37	chr13	111938538	111938538	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	atgaaaaagctgctgcccaaGcgcaaacctgaacggaagcc	10	12	0	2	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	ARHGEF7-232	NM_001113511	exon18	c.G2058A	p.K686K	GCCCAAGCGCAAA	.	259	8	146	0	.	19	19	0	0	0	A	111938538	G	A	111938538	2	1	5	1	0	0	0	0	0	0	0	1	911	962	34	3		3	ARHGEF7	13	111938538	Silent	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10	566616	111938538	3231340	397	841										
MCF2L	23263	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr13	113741680	113741680	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	cagcggcacctgttcctgcaCgagaaggcagtgctcttctg	12	13	2	1	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	MCF2L-228	NM_001112732	exon22	c.C2505T	p.H835H	CCTGCACGAGAAG	.	344	62	114	1	.	1	1	0	0	0	T	113741680	C	T	113741680	2	4	5	1	0	0	0	0	0	0	0	1	9407	535	19	1		1	MCF2L	13	113741680	Silent	SNP	C	TCGA-OR-A5J5-01A-11D-A29I-10	1803142	113741680	1428198	398	842										
TFDP1	7027	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr13	114292172	114292172	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	tggaggcgtgttcatcacgaCggcaggttccacgtctaacg	13	11	3	0	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	TFDP1-416	NM_007111	exon11	c.C1046T	p.T349M	TCACGACGGCAGG	.	363	44	144	0	.	24	20	4	0	0	T	114292172	C	T	114292172	3	4	5	1	0	0	0	0	1	0	0	0	15834	536	19	1	1084	1	TFDP1	13	114292172	Missense_Mutation	SNP	C	TCGA-OR-A5J5-01A-11D-A29I-10	550492	114292172	877706	399	843										
GRK1	6011	broad.mit.edu	37	chr13	114325865	114325865	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	cctggcttcccggagccgcgCgccctcttctacacggcgca	11	19	2	0	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	GRK1-614	NM_002929	exon3	c.C879T	p.R293R	GCCGCGCGCCCTC	.	202	6	58	0	.	0	0	0	0	0	T	114325865	C	T	114325865	2	4	5	1	0	0	0	0	0	0	0	1	6811	755	27	1		1	GRK1	13	114325865	Silent	SNP	C	TCGA-OR-A5J5-01A-11D-A29I-10	33693	114325865	844013	400	844										
MMP14	4323	hgsc.bcm.edu	37	chr14	23315160	23315160	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	gctgctgctcctggtgctggCggtgggccttgcagtcttct	15	12	2	0	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	MMP14-226	NM_004995	exon10	c.C1661T	p.A554V	TGCTGGCGGTGGG	.	34	15	0	0	.	16	10	6	0	0	T	23315160	C	T	23315160	3	4	5	1	0	0	0	0	1	0	0	0	9681	768	27	1	1699	1	MMP14	14	23315160	Missense_Mutation	SNP	C	TCGA-OR-A5J5-01A-11D-A29I-10		23315160	84034380	401	845										
MMP14	4323	broad.mit.edu	37	chr14	23315199	23315199	+	Frame_Shift_Del	DEL	C	C	-													0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	cttcttcagacgccatgggaCccccaggcgactgctctact					novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	MMP14-226	NM_004995	exon10	c.1700delC	p.T567fs	ATGGGACCCCCAG	.	50	7	9	0	.	0	0	0	0	0	-	23315199	C	-	23315199	7	5	5	1	0	1	0	1	0	0	0	0	9681	507	18	0	1738	0	MMP14	14	23315199	Frame_Shift_Del	DEL	C	TCGA-OR-A5J5-01A-11D-A29I-10	39	23315199	84034341	402	846										
EFS	10278	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr14	23828979	23828979	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	ccgtctgccagcagttcctcGggtgcttcatacaaattgag	10	12	2	1	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	EFS-153	NM_005864	exon4	c.C708T	p.P236P	TTCCTCGGGTGCT	.	83	13	70	0	.	0	0	0	0	0	A	23828979	G	A	23828979	2	1	5	1	0	0	0	0	0	0	0	1	4970	1103	39	1		1	EFS	14	23828979	Silent	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10	513780	23828979	83520561	403	847										
AKAP6	9472	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr14	33014537	33014537	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	tgtggcattactgcattcgaActgtctgactacagtccaag	9	10	1	1	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	AKAP6-733	NM_004274	exon4	c.A678G	p.E226E	ATTCGAACTGTCT	.	420	188	288	1	.	0	0	0	0	0	G	33014537	A	G	33014537	2	3	5	1	0	0	0	0	0	0	0	1	455	40	2	4		4	AKAP6	14	33014537	Silent	SNP	A	TCGA-OR-A5J5-01A-11D-A29I-10	9185558	33014537	74335003	404	848										
BAZ1A	11177	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr14	35231352	35231352	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	caggttcttgttgttggccaCgacttgagaaagaagagcta	12	7	1	3	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	BAZ1A-291	NM_013448	exon24	c.G3854A	p.R1285H	TGGCCACGACTTG	.	128	26	89	0	.	11	9	2	0	0	T	35231352	C	T	35231352	3	4	5	1	0	0	0	0	1	0	0	0	1330	536	19	1	832	1	BAZ1A	14	35231352	Missense_Mutation	SNP	C	TCGA-OR-A5J5-01A-11D-A29I-10	2216815	35231352	72118188	405	849										
NIN	51199	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr14	51237214	51237215	+	Frame_Shift_Del	DEL	CT	CT	-													0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	cctgcctgctgcaggatctgCtctctctcttttcggagttc					novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	CT	CT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	NIN-229	NM_020921	exon12	c.1325_1326del	p.442_442del	GATCTGCTCTCTC	.	127	59	89	0	.	0	0	0	0	0	-	51237215	CT	-	51237214	7	5	5	1	0	1	0	1	0	0	0	0	10446	796	28	0	5303	0	NIN	14	51237214	Frame_Shift_Del	DEL	CT	TCGA-OR-A5J5-01A-11D-A29I-10	16005862	51237214	56112326	406	850										
SYNE2	23224	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr14	64644168	64644168	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	gatcctcttccagagcttcaCgaggacctccataacgaaaa	7	13	2	1	rs202141038		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	SYNE2-164	NM_182914	exon96	c.C17523T	p.H5841H	GCTTCACGAGGAC	.	247	116	187	0	C|0.999;T|0.000	3	2	1	0	0	T	64644168	C	T	64644168	2	4	5	1	0	0	0	0	0	0	0	1	15483	535	19	1		1	SYNE2	14	64644168	Silent	SNP	C	TCGA-OR-A5J5-01A-11D-A29I-10	13406954	64644168	42705372	407	851										
SYNE2	23224	broad.mit.edu	37	chr14	64680991	64680991	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	aatccagactgattcttggcGtaaacggggagagagcgagg	15	7	1	3	rs150629598	byfrequency	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	SYNE2-164	NM_182914	exon106	c.G19136A	p.R6379H	CTTGGCGTAAACG	.	213	7	128	0	G|1.000;A|0.000	3	3	0	0	0	A	64680991	G	A	64680991	3	1	5	1	0	0	0	0	1	0	0	0	15483	1145	40	1	19554	1	SYNE2	14	64680991	Missense_Mutation	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10	36823	64680991	42668549	408	852										
ACTN1	87	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	69371417	69371417	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	gtccaggtacttctctgccaCgtcaaaagccgtattcagat	8	12	3	1	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	ACTN1-514	NM_001102	exon7	c.G631A	p.V211M	CTGCCACGTCAAA	.	245	27	144	0	.	2	1	1	0	0	T	69371417	C	T	69371417	3	4	5	1	0	0	0	0	1	0	0	0	204	536	19	1	2177	1	ACTN1	14	69371417	Missense_Mutation	SNP	C	TCGA-OR-A5J5-01A-11D-A29I-10	4690426	69371417	37978123	409	853										
PCNX	22990	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr14	71575457	71575457	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	atgtccaccactgggtttgtGccttgtcggcgctcttctac	10	13	2	0	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	PCNX-91	NM_014982	exon34	c.G6438A	p.V2146V	GTTTGTGCCTTGT	.	283	60	173	0	.	18	17	1	0	0	A	71575457	G	A	71575457	2	1	5	1	0	0	0	0	0	0	0	1	11620	1306	46	3		3	PCNX	14	71575457	Silent	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10	2204040	71575457	35774083	410	854										
ACOT2	10965	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr14	74040291	74040291	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	aactacttgctcagtcatccCgaggttagttcttctttcag	7	11	5	0	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	ACOT2-91	NM_006821	exon2	c.C843T	p.P281P	TCATCCCGAGGTT	.	294	49	185	0	.	0	0	0	0	0	T	74040291	C	T	74040291	2	4	5	1	0	0	0	0	0	0	0	1	152	639	23	1		1	ACOT2	14	74040291	Silent	SNP	C	TCGA-OR-A5J5-01A-11D-A29I-10	2464834	74040291	33309249	411	855										
ZC3H14	79882	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr14	89069362	89069362	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	acccacagcagttgcacttgCtgagcaggcagcttgaggac	12	12	0	2	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	ZC3H14-93	NM_001160104	exon12	c.C1705T	p.L569L	CACTTGCTGAGCA	.	151	62	113	0	.	13	7	6	0	0	T	89069362	C	T	89069362	2	4	5	1	0	0	0	0	0	0	0	1	17603	796	28	3		3	ZC3H14	14	89069362	Silent	SNP	C	TCGA-OR-A5J5-01A-11D-A29I-10	15029071	89069362	18280178	412	856										
PSMC1	5700	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr14	90730133	90730137	+	Frame_Shift_Del	DEL	TTTCA	TTTCA	-													0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	agaacactacgtcagcattcTttcatttgtagacaaggatc					novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	TTTCA	TTTCA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	PSMC1-90	NM_002802	exon5	c.407_411del	p.136_137del	GCATTCTTTCATT	.	285	62	194	0	.	0	0	0	0	0	-	90730137	TTTCA	-	90730133	7	5	5	1	0	1	0	1	0	0	0	0	12717	1609	56	0	425	0	PSMC1	14	90730133	Frame_Shift_Del	DEL	TTTCA	TCGA-OR-A5J5-01A-11D-A29I-10	1660771	90730133	16619407	413	857										
PPP4R4	57718	broad.mit.edu;ucsc.edu	37	chr14	94741742	94741742	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	cggactcgtaatgccagtagCgttccatcttccttttctcc	7	14	2	0	rs114442446	alternate_allele	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	PPP4R4-94	NM_058237	exon24	c.C2481T	p.S827S	CAGTAGCGTTCCA	.	209	32	132	2	C|0.999;A|0.001	0	0	0	0	0	T	94741742	C	T	94741742	2	4	5	1	0	0	0	0	0	0	0	1	12437	767	27	1		1	PPP4R4	14	94741742	Silent	SNP	C	TCGA-OR-A5J5-01A-11D-A29I-10	4011609	94741742	12607798	414	858										
DEGS2	123099	hgsc.bcm.edu	37	chr14	100615855	100615855	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	tgccgaaggccgcgttgtgcGagatgtcgtggatggccagc	17	10	0	1	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	DEGS2-90	NM_206918	exon2	c.C275T	p.S92L	TTGTGCGAGATGT	.	39	4	0	0	.	0	0	0	0	0	A	100615855	G	A	100615855	3	1	5	1	0	0	0	0	1	0	0	0	4434	1059	37	1	704	1	DEGS2	14	100615855	Missense_Mutation	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10	5874113	100615855	6733685	415	859										
ZNF839	55778	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr14	102793112	102793112	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	aagcaccctccgggggtgcaCggaggaaaggacgctcagcc	15	13	1	0	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	ZNF839-91	NM_018335	exon2	c.C1079T	p.T360M	GGTGCACGGAGGA	.	145	68	62	0	.	3	1	2	0	0	T	102793112	C	T	102793112	3	4	5	1	0	0	0	0	1	0	0	0	18225	536	19	1	1085	1	ZNF839	14	102793112	Missense_Mutation	SNP	C	TCGA-OR-A5J5-01A-11D-A29I-10	2177257	102793112	4556428	416	860										
PPP1R13B	23368	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr14	104205313	104205313	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	ttaaaccggactctcagcccGtgccccgtccgctccgagtt	9	17	1	0	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	PPP1R13B-227	NM_015316	exon13	c.C2640T	p.H880H	CAGCCCGTGCCCC	.	160	82	103	0	.	21	6	15	0	0	A	104205313	G	A	104205313	2	1	5	1	0	0	0	0	0	0	0	1	12389	1136	40	1		1	PPP1R13B	14	104205313	Silent	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10	1412201	104205313	3144227	417	861										
KIF26A	26153	hgsc.bcm.edu	37	chr14	104642489	104642489	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	gcgaggtcagcgtctgcactGccgacagccgtgaccccacg	13	16	2	1	rs117573425	byfrequency	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	KIF26A-24	NM_015656	exon12	c.G3364T	p.A1122S	TGCACTGCCGACA	.	22	17	0	0	G|0.982;T|0.018	9	5	4	0	0	T	104642489	G	T	104642489	3	4	5	1	0	0	0	0	1	0	0	0	8315	1319	46	3	3410	3	KIF26A	14	104642489	Missense_Mutation	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10	437176	104642489	2707051	418	862										
CASC5	57082	bcgsc.ca	37	chr15	40914772	40914772	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	ctaacaaagagccacactgtCgtcattggatttggtccttc	8	11	1	1	rs11855334	byfrequency	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	CASC5-660	NM_170589	exon11	c.C2388T	p.V796V	CACTGTCGTCATT	.	199	7	272	4	C|0.632;T|0.368	0	0	0	0	0	T	40914772	C	T	40914772	2	4	5	1	0	0	0	0	0	0	0	1	2669	871	31	1		1	CASC5	15	40914772	Silent	SNP	C	TCGA-OR-A5J5-01A-11D-A29I-10		40914772	61616620	419	863										
LACTB	114294	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr15	63433897	63433897	+	Frame_Shift_Del	DEL	C	C	-													0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	agactataaataacaaggttCccccaagaggaatcattgtt					novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	LACTB-90	NM_032857	exon6	c.1537delC	p.P513fs	AAGGTTCCCCCAA	.	76	32	93	0	.	0	0	0	0	0	-	63433897	C	-	63433897	7	5	5	1	0	1	0	1	0	0	0	0	8619	855	30	0	1563	0	LACTB	15	63433897	Frame_Shift_Del	DEL	C	TCGA-OR-A5J5-01A-11D-A29I-10	22519125	63433897	39097495	420	864										
ACSBG1	23205	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr15	78466041	78466041	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	accctccggatcccctcttcGatggcctggtacacggcctc	9	18	1	0	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	ACSBG1-91	NM_015162	exon13	c.C1983T	p.I661I	CTCTTCGATGGCC	.	78	35	105	0	.	0	0	0	0	0	A	78466041	G	A	78466041	2	1	5	1	0	0	0	0	0	0	0	1	173	1048	37	1		1	ACSBG1	15	78466041	Silent	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10	15032144	78466041	24065351	421	865										
AP3B2	8120	bcgsc.ca	37	chr15	83328678	83328678	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	gcaccacaatgtggtcactcCgacaggtgtctggcagcatg	12	12	2	0	rs200505090		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	AP3B2-94	NM_004644	exon25	c.G3017A	p.R1006Q	TCACTCCGACAGG	.	131	38	149	2	.	2	2	0	0	0	T	83328678	C	T	83328678	3	4	5	1	0	0	0	0	1	0	0	0	745	652	23	1	239	1	AP3B2	15	83328678	Missense_Mutation	SNP	C	TCGA-OR-A5J5-01A-11D-A29I-10	4862637	83328678	19202714	422	866										
BNC1	646	broad.mit.edu	37	chr15	83932513	83932513	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	tgtttgctacctcggcaggcGtggctggactgcggtagaaa	15	9	0	1	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	BNC1-93	NM_001717	exon4	c.C1490T	p.T497M	GCAGGCGTGGCTG	.	219	6	282	0	.	0	0	0	0	0	A	83932513	G	A	83932513	3	1	5	1	0	0	0	0	1	0	0	0	1475	1145	40	1	1502	1	BNC1	15	83932513	Missense_Mutation	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10	603835	83932513	18598879	423	867										
ACAN	176	bcgsc.ca	37	chr15	89398631	89398631	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	ctacggttggtgaactgcccTctggagctgagatcctagag	13	10	1	3	rs938609	byfrequency	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	ACAN-25	NM_001135	exon12	c.T2815A	p.S939T	CTGCCCTCTGGAG	.	80	4	110	0	T|0.540;A|0.460	0	0	0	0	0	A	89398631	T	A	89398631	3	1	5	1	0	0	0	0	1	0	0	0	117	1551	54	5	2857	5	ACAN	15	89398631	Missense_Mutation	SNP	T	TCGA-OR-A5J5-01A-11D-A29I-10	5466118	89398631	13132761	424	868										
CRTC3	64784	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr15	91184391	91184391	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	tttcatttgagaccaagcccGtattccaactgcgggagtct	9	11	2	1	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	CRTC3-393	NM_022769	exon14	c.G1611A	p.P537P	AAGCCCGTATTCC	.	110	45	130	0	.	7	4	3	0	0	A	91184391	G	A	91184391	2	1	5	1	0	0	0	0	0	0	0	1	3907	1132	40	1		1	CRTC3	15	91184391	Silent	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10	1785760	91184391	11347001	425	869										
SSTR5	6755	hgsc.bcm.edu	37	chr16	1129594	1129594	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	ggctgcgtgcggcggcgctcGgagcggaaggtgacgcgcat	20	11	0	1	rs201314089		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	SSTR5-522	NM_001172560	exon2	c.G726A	p.S242S	GCGCTCGGAGCGG	.	55	14	7	0	G|0.999;A|0.001	0	0	0	0	0	A	1129594	G	A	1129594	2	1	5	1	0	0	0	0	0	0	0	1	15238	1103	39	1		1	SSTR5	16	1129594	Silent	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10		1129594	89225159	426	870										
BAIAP3	8938	broad.mit.edu;bcgsc.ca	37	chr16	1393394	1393394	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	ccatgggccgggccccacagGcactggcaggtcagcagccg	15	16	1	0	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	BAIAP3-91	NM_003933	exon15	c.G1371A	p.L457L	CCACAGGCACTGG	.	264	132	60	1	.	0	0	0	0	0	A	1393394	G	A	1393394	2	1	5	1	0	0	0	0	0	0	0	1	1305	1217	42	3		3	BAIAP3	16	1393394	Silent	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10	263800	1393394	88961359	427	871										
IGFALS	3483	hgsc.bcm.edu	37	chr16	1841949	1841949	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	cgtcctccagcctgctcagaCggttgttgctgaggccgagc	13	14	1	2	rs199977317		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	IGFALS-90	NM_001146006	exon2	c.G584A	p.R195H	CTCAGACGGTTGT	.	109	74	6	0	C|0.999;T|0.000	0	0	0	0	0	T	1841949	C	T	1841949	3	4	5	1	0	0	0	0	1	0	0	0	7598	536	19	1	1351	1	IGFALS	16	1841949	Missense_Mutation	SNP	C	TCGA-OR-A5J5-01A-11D-A29I-10	448555	1841949	88512804	428	872										
TBL3	10607	hgsc.bcm.edu	37	chr16	2025627	2025627	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	ctgacccactgcaccctggcAcacaccgccggcgtggtcct	10	19	0	1	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	TBL3-90	NM_006453	exon10	c.A903G	p.A301A	CCTGGCACACACC	.	37	20	0	0	.	8	5	3	0	0	G	2025627	A	G	2025627	2	3	5	1	0	0	0	0	0	0	0	1	15680	146	6	4		4	TBL3	16	2025627	Silent	SNP	A	TCGA-OR-A5J5-01A-11D-A29I-10	183678	2025627	88329126	429	873										
ZNF598	90850	hgsc.bcm.edu	37	chr16	2059674	2059674	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	acagcacgcagctcccgcctTcccgctcaggagctgccgcc	10	20	1	0	rs71384660		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	ZNF598-432	NM_178167	exon2	c.A74G	p.E25G	CCGCCTTCCCGCT	.	4	4	0	0	T|0.007;C|0.993	2	0	2	0	0	C	2059674	T	C	2059674	3	2	5	1	0	0	0	0	1	0	0	0	18065	1770	62	4	2689	4	ZNF598	16	2059674	Missense_Mutation	SNP	T	TCGA-OR-A5J5-01A-11D-A29I-10	34047	2059674	88295079	430	874										
PRSS27	83886	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr16	2763556	2763556	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	ggcatccttcttgccctcctCgaagccggcgcacagcatgt	10	16	1	0	rs149957191	byfrequency	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	PRSS27-91	NM_031948	exon5	c.G652A	p.E218K	CCTCCTCGAAGCC	.	358	134	211	1	C|0.999;T|0.001	4	4	0	0	0	T	2763556	C	T	2763556	3	4	5	1	0	0	0	0	1	0	0	0	12653	893	31	1	228	1	PRSS27	16	2763556	Missense_Mutation	SNP	C	TCGA-OR-A5J5-01A-11D-A29I-10	703882	2763556	87591197	431	875										
HMOX2	3163	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	4558130	4558130	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	ctctaccgggccaggatgaaCgccctggacctgaacatgaa	11	13	1	3	rs186971432		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	HMOX2-90	NM_001127205	exon4	c.C621T	p.N207N	GATGAACGCCCTG	.	724	294	497	2	C|0.999;T|0.000	64	36	28	0	0	T	4558130	C	T	4558130	2	4	5	1	0	0	0	0	0	0	0	1	7265	535	19	1		1	HMOX2	16	4558130	Silent	SNP	C	TCGA-OR-A5J5-01A-11D-A29I-10	1794574	4558130	85796623	432	876										
SYT17	51760	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	19194969	19194969	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	tcagacggacctataaccccGacgactatttcaggaagttc	8	12	2	1	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	SYT17-69	NM_016524	exon5	c.G451A	p.D151N	AACCCCGACGACT	.	299	144	146	2	.	6	0	6	0	0	A	19194969	G	A	19194969	3	1	5	1	0	0	0	0	1	0	0	0	15510	1058	37	1	469	1	SYT17	16	19194969	Missense_Mutation	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10	14636839	19194969	71159784	433	877										
TMC5	79838	broad.mit.edu	37	chr16	19452014	19452015	+	Frame_Shift_Ins	INS	-	-	T													0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	ttcaacctaactctccacccINSttttttggggagccagacta					novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	TMC5-91	NM_001105249	exon3	c.654_655insT	p.P218fs	TCCACCCTTTTTT	.	233	9	177	0	.	0	0	0	0	0	T	19452015	-	T	19452014	7	5	5	1	0	1	1	0	0	0	0	0	16025	668	24	0	656	0	TMC5	16	19452014	Frame_Shift_Ins	INS	-	TCGA-OR-A5J5-01A-11D-A29I-10	257045	19452014	70902739	434	878										
ARHGAP17	55114	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr16	24950845	24950845	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	cggaagtggcggctggaaagCgggggatatgtgctttctat	17	6	1	0	rs145791095	byfrequency	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	ARHGAP17-227	NM_001006634	exon17	c.G1564A	p.A522T	GGAAAGCGGGGGA	.	110	53	51	0	C|0.997;T|0.003	4	3	1	0	0	T	24950845	C	T	24950845	3	4	5	1	0	0	0	0	1	0	0	0	867	768	27	1	1097	1	ARHGAP17	16	24950845	Missense_Mutation	SNP	C	TCGA-OR-A5J5-01A-11D-A29I-10	5498831	24950845	65403908	435	879										
LCMT1	51451	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr16	25151548	25151548	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	gactttccaatgattgtcacGagaaagctgcacagtatcaa	8	9	2	2	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	LCMT1-22	NM_016309	exon4	c.G384A	p.T128T	TGTCACGAGAAAG	.	142	62	130	0	.	16	11	5	0	0	A	25151548	G	A	25151548	2	1	5	1	0	0	0	0	0	0	0	1	8700	1045	37	1		1	LCMT1	16	25151548	Silent	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10	200703	25151548	65203205	436	880										
KIAA0556	23247	broad.mit.edu;bcgsc.ca	37	chr16	27782957	27782957	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	agcatggactacgaggcaccGctgatgccctgtggctgtat	13	11	0	1	rs202124589		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	KIAA0556-141	NM_015202	exon22	c.G4182A	p.P1394P	GGCACCGCTGATG	.	156	31	102	1	G|0.999;A|0.000	0	0	0	0	0	A	27782957	G	A	27782957	2	1	5	1	0	0	0	0	0	0	0	1	8204	1074	38	1		1	KIAA0556	16	27782957	Silent	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10	2631409	27782957	62571796	437	881										
ATXN2L	11273	hgsc.bcm.edu;broad.mit.edu	37	chr16	28847350	28847350	+	Frame_Shift_Del	DEL	G	G	-													0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	tgcacccaccccagagtcatGgggggcccccccaaggcgcg					novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	ATXN2L-92	NM_148414	exon22	c.2992delG	p.G998fs	AGTCATGGGGGGC	.	35	12	7	0	.	0	0	0	0	0	-	28847350	G	-	28847350	7	5	5	1	0	1	0	1	0	0	0	0	1213	1348	47	0	3078	0	ATXN2L	16	28847350	Frame_Shift_Del	DEL	G	TCGA-OR-A5J5-01A-11D-A29I-10	1064393	28847350	61507403	438	882										
TAOK2	9344	broad.mit.edu;bcgsc.ca	37	chr16	29994575	29994575	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	gaggaggaggaagaaggcccTgaagcccgggagatggccat	18	8	0	3	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	TAOK2-521	NM_004783	exon12	c.T1182C	p.P394P	AGGCCCTGAAGCC	.	71	6	39	0	.	11	11	0	0	0	C	29994575	T	C	29994575	2	2	5	1	0	0	0	0	0	0	0	1	15585	1567	55	4		4	TAOK2	16	29994575	Silent	SNP	T	TCGA-OR-A5J5-01A-11D-A29I-10	1147225	29994575	60360178	439	883										
INO80E	283899	hgsc.bcm.edu	37	chr16	30016621	30016621	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	ttctggggctggggtcgggaCaaccctgacccccctcccac	12	17	1	1	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	INO80E-91	NM_173618	exon7	c.C593T	p.T198I	TCGGGACAACCCT	.	28	14	0	0	.	22	13	9	0	0	T	30016621	C	T	30016621	3	4	5	1	0	0	0	0	1	0	0	0	7771	478	17	3	619	3	INO80E	16	30016621	Missense_Mutation	SNP	C	TCGA-OR-A5J5-01A-11D-A29I-10	22046	30016621	60338132	440	884										
PRSS8	5652	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr16	31144689	31144689	+	Frame_Shift_Del	DEL	G	G	-													0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	gccacctgtgatgcgtgcttGgggggccacaccgcagggag					novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	.	NM_002773	exon3	c.124delC	p.Q42fs	GTGCTTGGGGGGC	.	240	130	59	0	.	0	0	0	0	0	-	31144689	G	-	31144689	7	5	5	1	0	1	0	1	0	0	0	0	12667	1357	47	0	923	0	PRSS8	16	31144689	Frame_Shift_Del	DEL	G	TCGA-OR-A5J5-01A-11D-A29I-10	1128068	31144689	59210064	441	885										
ABCC12	94160	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr16	48155704	48155704	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	atccatgcctgctgtgaaacGtaggccaaagttccattgac	9	11	0	2	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	ABCC12-93	NM_033226	exon11	c.C1635T	p.Y545Y	TGAAACGTAGGCC	.	176	93	132	0	.	0	0	0	0	0	A	48155704	G	A	48155704	2	1	5	1	0	0	0	0	0	0	0	1	52	1140	40	1		1	ABCC12	16	48155704	Silent	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10	17011015	48155704	42199049	442	886										
LONP2	83752	hgsc.bcm.edu	37	chr16	48278491	48278491	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	ggcgtcatccccaacacgccTgaccccgccagcgacgcgca	10	20	1	1	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	LONP2-90	NM_031490	exon1	c.T192C	p.P64P	CACGCCTGACCCC	.	35	11	2	0	.	2	2	0	0	0	C	48278491	T	C	48278491	2	2	5	1	0	0	0	0	0	0	0	1	8920	1567	55	4		4	LONP2	16	48278491	Silent	SNP	T	TCGA-OR-A5J5-01A-11D-A29I-10	122787	48278491	42076262	443	887										
SNX20	124460	hgsc.bcm.edu	37	chr16	50707433	50707433	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	cacgaagtccttgcccagcgCgtaggccaggcggaccatgg	14	14	0	0	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	SNX20-23	NM_182854	exon4	c.G835A	p.A279T	CCAGCGCGTAGGC	.	94	60	6	0	.	0	0	0	0	0	T	50707433	C	T	50707433	3	4	5	1	0	0	0	0	1	0	0	0	14927	768	27	1	262	1	SNX20	16	50707433	Missense_Mutation	SNP	C	TCGA-OR-A5J5-01A-11D-A29I-10	2428942	50707433	39647320	444	888										
NOD2	64127	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr16	50744753	50744753	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	gcaagagcacgctcctgcagCggctgcacttgctgtgggct	14	13	0	1	rs104895427		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	NOD2-231	NM_022162	exon4	c.C931T	p.R311W	CTGCAGCGGCTGC	.	104	54	46	0	C|0.999;T|0.001	0	0	0	0	0	T	50744753	C	T	50744753	3	4	5	1	0	0	0	0	1	0	0	0	10546	759	27	1	945	1	NOD2	16	50744753	Missense_Mutation	SNP	C	TCGA-OR-A5J5-01A-11D-A29I-10	37320	50744753	39610000	445	889										
RANBP10	57610	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	67765468	67765468	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	ggcacaatacccatgatgcaCgaggtaagatgaaaccatgc	10	10	0	3	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	RANBP10-227	NM_020850	exon7	c.G796A	p.V266M	GATGCACGAGGTA	.	275	29	136	0	.	2	2	0	0	0	T	67765468	C	T	67765468	3	4	5	1	0	0	0	0	1	0	0	0	13061	536	19	1	1098	1	RANBP10	16	67765468	Missense_Mutation	SNP	C	TCGA-OR-A5J5-01A-11D-A29I-10	17020715	67765468	22589285	446	890										
PDPR	55066	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr16	70190402	70190402	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	tggatttcattggtcgcgacGccctcctgcagcagaagcag	12	12	1	1	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	PDPR-135	NM_017990	exon19	c.G2260A	p.A754T	CGCGACGCCCTCC	.	230	30	128	0	.	0	0	0	0	0	A	70190402	G	A	70190402	3	1	5	1	0	0	0	0	1	0	0	0	11718	1087	38	1	2326	1	PDPR	16	70190402	Missense_Mutation	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10	2424934	70190402	20164351	447	891										
VAC14	55697	broad.mit.edu;bcgsc.ca	37	chr16	70732653	70732653	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	gaacttgaggtcctcctcccGcagcaggatgtctgccattg	11	13	1	1	rs145938865	byfrequency	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	VAC14-227	NM_018052	exon15	c.C1723T	p.R575W	CCTCCCGCAGCAG	.	287	10	153	1	G|0.999;A|0.001	19	19	0	0	0	A	70732653	G	A	70732653	3	1	5	1	0	0	0	0	1	0	0	0	17149	1086	38	1	645	1	VAC14	16	70732653	Missense_Mutation	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10	542251	70732653	19622100	448	892										
DHODH	1723	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr16	72057466	72057466	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	ctccctggtgcagctgtacaCggccctcaccttctgggggc	12	16	2	0	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	DHODH-227	NM_001361	exon8	c.C1067T	p.T356M	TGTACACGGCCCT	.	62	24	37	0	.	12	6	6	0	0	T	72057466	C	T	72057466	3	4	5	1	0	0	0	0	1	0	0	0	4495	536	19	1	1097	1	DHODH	16	72057466	Missense_Mutation	SNP	C	TCGA-OR-A5J5-01A-11D-A29I-10	1324813	72057466	18297287	449	893										
CTRB2	440387	broad.mit.edu;bcgsc.ca	37	chr16	75238144	75238144	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	gcgtggtggtagagcaggtgCggctgccccaggacacaatg	17	10	0	1	rs201069805		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	CTRB2-68	NM_001025200	exon7	c.G707A	p.R236H	CAGGTGCGGCTGC	.	248	127	46	1	.	0	0	0	0	0	T	75238144	C	T	75238144	3	4	5	1	0	0	0	0	1	0	0	0	4032	768	27	1	88	1	CTRB2	16	75238144	Missense_Mutation	SNP	C	TCGA-OR-A5J5-01A-11D-A29I-10	3180678	75238144	15116609	450	894										
TMEM231	79583	broad.mit.edu;bcgsc.ca	37	chr16	75575345	75575345	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	ggggttgggatcattcaggaCggtggtaactgcaatgcaat	15	6	2	0	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	.	NM_001077416	exon5	c.G832A	p.V278I	TCAGGACGGTGGT	.	136	52	108	1	.	1	1	0	0	0	T	75575345	C	T	75575345	3	4	5	1	0	0	0	0	1	0	0	0	16186	536	19	1	285	1	TMEM231	16	75575345	Missense_Mutation	SNP	C	TCGA-OR-A5J5-01A-11D-A29I-10	337201	75575345	14779408	451	895										
MBTPS1	8720	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr16	84129260	84129260	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	gcagtgtctgggcaacctggCgcgggatggctctcagcagc	16	12	2	0	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	MBTPS1-92	NM_003791	exon4	c.G572A	p.R191H	ACCTGGCGCGGGA	.	131	22	77	0	.	1	1	0	0	0	T	84129260	C	T	84129260	3	4	5	1	0	0	0	0	1	0	0	0	9389	768	27	1	2666	1	MBTPS1	16	84129260	Missense_Mutation	SNP	C	TCGA-OR-A5J5-01A-11D-A29I-10	8553915	84129260	6225493	452	896										
IL17C	27189	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	chr16	88706308	88706308	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	tatcgatgcacggacgggccGcgagacagctgcgctcaact	13	13	1	1	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	IL17C-90	NM_013278	exon3	c.G422A	p.R141H	CGGGCCGCGAGAC	.	47	25	9	0	.	1	0	1	0	0	A	88706308	G	A	88706308	3	1	5	1	0	0	0	0	1	0	0	0	7657	1087	38	1	432	1	IL17C	16	88706308	Missense_Mutation	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10	4577048	88706308	1648445	453	897										
ACSF3	197322	ucsc.edu	37	chr16	89167094	89167094	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	gccgcctgtcagtgcaatgcTgccccatgtggtgctcacct	11	15	2	0	rs7188200	byfrequency	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	ACSF3-68	NM_174917	exon3	c.T5C	p.L2P	CAATGCTGCCCCA	.	46	14	10	0	T|0.381;C|0.619	1	1	0	0	0	C	89167094	T	C	89167094	3	2	5	1	0	0	0	0	1	0	0	0	176	1580	55	4	7	4	ACSF3	16	89167094	Missense_Mutation	SNP	T	TCGA-OR-A5J5-01A-11D-A29I-10	460786	89167094	1187659	454	898										
ANKRD11	29123	broad.mit.edu	37	chr16	89345709	89345709	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	cgtccacgatggcggccagcGtctgctggatcacctcccgc	12	17	2	0	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	ANKRD11-139	NM_001256183	exon9	c.C7241T	p.T2414M	GCCAGCGTCTGCT	.	301	153	58	2	.	34	16	18	0	0	A	89345709	G	A	89345709	3	1	5	1	0	0	0	0	1	0	0	0	639	1145	40	1	770	1	ANKRD11	16	89345709	Missense_Mutation	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10	178615	89345709	1009044	455	899										
ANKRD11	29123	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr16	89352532	89352532	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	gagttggccactttcagcggCgtctcgcctttcctgttgct	11	13	2	0	rs149525788	alternate_allele	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	ANKRD11-139	NM_001256183	exon8	c.G807A	p.T269T	CAGCGGCGTCTCG	.	158	41	104	0	C|1.000;G|0.000	16	8	8	0	0	T	89352532	C	T	89352532	2	4	5	1	0	0	0	0	0	0	0	1	639	755	27	1		1	ANKRD11	16	89352532	Silent	SNP	C	TCGA-OR-A5J5-01A-11D-A29I-10	6823	89352532	1002221	456	900										
MC1R	4157	hgsc.bcm.edu	37	chr16	89986317	89986317	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	ctggcccgggcctgccagcaCgcccagggcatcgcccggct	14	19	0	0	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	.	NM_002386	exon1	c.C651T	p.H217H	CCAGCACGCCCAG	.	67	36	4	0	.	90	48	42	0	0	T	89986317	C	T	89986317	2	4	5	1	0	0	0	0	0	0	0	1	9391	535	19	1		1	MC1R	16	89986317	Silent	SNP	C	TCGA-OR-A5J5-01A-11D-A29I-10	633785	89986317	368436	457	901										
RPH3AL	9501	broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr17	169309	169309	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	gccgttccccatcacattccGcctcatggtctccagccgct	7	19	3	0	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	RPH3AL-91	NM_001190413	exon4	c.C253T	p.R85W	CATTCCGCCTCAT	.	79	65	86	1	.	0	0	0	0	0	A	169309	G	A	169309	3	1	5	1	0	0	0	0	1	0	0	0	13587	1086	38	1	718	1	RPH3AL	17	169309	Missense_Mutation	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10		169309	81025901	458	902										
MYO1C	4641	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	1371412	1371412	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	tcgtatttcacaacaggcacCgcatactggggacagaggcc	11	12	1	1	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	MYO1C-90	NM_001080779	exon28	c.G2766A	p.A922A	AGGCACCGCATAC	.	88	43	60	0	.	0	0	0	0	0	T	1371412	C	T	1371412	2	4	5	1	0	0	0	0	0	0	0	1	10098	639	23	1		1	MYO1C	17	1371412	Silent	SNP	C	TCGA-OR-A5J5-01A-11D-A29I-10	1202103	1371412	79823798	459	903										
GSG2	83903	hgsc.bcm.edu	37	chr17	3627663	3627663	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	ccccagccgcgactccggccGcctcagcccggacctcagcg	11	22	2	0	rs55991903		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	GSG2-297	NM_031965	exon1	c.G434A	p.R145H	CCGGCCGCCTCAG	.	18	18	0	0	G|0.993;A|0.007	1	0	1	0	0	A	3627663	G	A	3627663	3	1	5	1	0	0	0	0	1	0	0	0	6843	1087	38	1	436	1	GSG2	17	3627663	Missense_Mutation	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10	2256251	3627663	77567547	460	904										
VMO1	284013	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	4688850	4688850	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	agcggaagcgcacgttgttcGctgctgtgttgtcaccgagg	15	10	1	0	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	VMO1-69	NM_182566	exon3	c.C416T	p.A139V	TTGTTCGCTGCTG	.	106	47	43	0	.	2	2	0	0	0	A	4688850	G	A	4688850	3	1	5	1	0	0	0	0	1	0	0	0	17215	1087	38	1	196	1	VMO1	17	4688850	Missense_Mutation	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10	1061187	4688850	76506360	461	905										
ASGR1	432	hgsc.bcm.edu	37	chr17	7077106	7077106	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	ggcacagtcctcgcctcctcCgagcccgtggccgtaccagt	11	18	0	0	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	ASGR1-153	NM_001671	exon9	c.G748A	p.G250R	CTCCTCCGAGCCC	.	41	37	3	0	.	1	0	1	0	0	T	7077106	C	T	7077106	3	4	5	1	0	0	0	0	1	0	0	0	1040	661	23	1	131	1	ASGR1	17	7077106	Missense_Mutation	SNP	C	TCGA-OR-A5J5-01A-11D-A29I-10	2388256	7077106	74118104	462	906										
SPEM1	374768	broad.mit.edu;bcgsc.ca	37	chr17	7324353	7324353	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	ccgtcgaggctctcccacacGctgtgctcactgcccagtag	10	17	2	0	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	SPEM1-90	NM_199339	exon3	c.G359A	p.R120H	CCACACGCTGTGC	.	151	7	136	0	.	0	0	0	0	0	A	7324353	G	A	7324353	3	1	5	1	0	0	0	0	1	0	0	0	15074	1087	38	1	369	1	SPEM1	17	7324353	Missense_Mutation	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10	247247	7324353	73870857	463	907										
TP53	7157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	7577121	7577121	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	cccaggacaggcacaaacacGcacctcaaagctgttccgtc	8	16	1	0	rs121913343	bycluster	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	TP53-70225	NM_000546	exon8	c.C817T	p.R273C	AAACACGCACCTC	.	79	74	119	0	.	2	0	2	0	0	A	7577121	G	A	7577121	3	1	5	1	0	0	0	0	1	0	0	0	16419	1087	38	1	469	1	TP53	17	7577121	Missense_Mutation	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10	252768	7577121	73618089	464	908										
ALOX12B	242	hgsc.bcm.edu;bcgsc.ca	37	chr17	7982767	7982767	+	Frame_Shift_Del	DEL	G	G	-													0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	tccaaagtgcagcaggcagaGgggggcgcagtggtgctgct					novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	ALOX12B-226	NM_001139	exon8	c.1018delC	p.L340fs	GGCAGAGGGGGGC	.	227	196	47	1	.	0	0	0	0	0	-	7982767	G	-	7982767	7	5	5	1	0	1	0	1	0	0	0	0	537	1000	35	0	1119	0	ALOX12B	17	7982767	Frame_Shift_Del	DEL	G	TCGA-OR-A5J5-01A-11D-A29I-10	405646	7982767	73212443	465	909										
MYH10	4628	ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	8424545	8424545	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	cccttcttggttttatatgcGgagccaaaagctgtctcagt	9	10	2	0	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	MYH10-92	NM_001256012	exon18	c.C2016T	p.S672S	ATATGCGGAGCCA	.	155	75	201	2	.	0	0	0	0	0	A	8424545	G	A	8424545	2	1	5	1	0	0	0	0	0	0	0	1	10058	1103	39	1		1	MYH10	17	8424545	Silent	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10	441778	8424545	72770665	466	910										
DNAH9	1770	bcgsc.ca	37	chr17	11532835	11532835	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	caggtccagcaaatgcatgaAgaatttcaagagatgtacag	10	7	1	3	rs9895535	byfrequency	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	DNAH9-168	NM_001372	exon7	c.A1452G	p.E484E	GCATGAAGAATTT	.	98	6	76	0	A|0.589;G|0.411	0	0	0	0	0	G	11532835	A	G	11532835	2	3	5	1	0	0	0	0	0	0	0	1	4619	69	3	4		4	DNAH9	17	11532835	Silent	SNP	A	TCGA-OR-A5J5-01A-11D-A29I-10	3108290	11532835	69662375	467	911										
DNAH9	1770	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr17	11778483	11778483	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	tggtgaagatctccgggtcaCgcagattggtcagaaagggt	15	7	3	4	rs145738103	byfrequency	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	DNAH9-168	NM_001372	exon53	c.C10460T	p.T3487M	GGGTCACGCAGAT	.	77	5	95	0	C|0.999;T|0.001	0	0	0	0	0	T	11778483	C	T	11778483	3	4	5	1	0	0	0	0	1	0	0	0	4619	536	19	1	10670	1	DNAH9	17	11778483	Missense_Mutation	SNP	C	TCGA-OR-A5J5-01A-11D-A29I-10	245648	11778483	69416727	468	912										
DNAH9	1770	broad.mit.edu	37	chr17	11845741	11845741	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	tgccttccaggagtgtggccGgatgaatatcctcaccagag	12	11	1	2	rs149812805	byfrequency	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	DNAH9-168	NM_001372	exon67	c.G12782A	p.R4261Q	GTGGCCGGATGAA	.	114	4	158	1	G|1.000;A|0.000	0	0	0	0	0	A	11845741	G	A	11845741	3	1	5	1	0	0	0	0	1	0	0	0	4619	1116	39	1	13048	1	DNAH9	17	11845741	Missense_Mutation	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10	67258	11845741	69349469	469	913										
LGALS9B	284194	broad.mit.edu	37	chr17	20363687	20363687	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	ggttccactggagctgagaaCggccccattgacagtgatct	12	11	1	3	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	LGALS9B-23	NM_001042685	exon2	c.G109A	p.V37I	TGAGAACGGCCCC	.	795	15	677	0	.	0	0	0	0	0	T	20363687	C	T	20363687	3	4	5	1	0	0	0	0	1	0	0	0	8772	536	19	1	998	1	LGALS9B	17	20363687	Missense_Mutation	SNP	C	TCGA-OR-A5J5-01A-11D-A29I-10	8517946	20363687	60831523	470	914										
LHX1	3975	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	35298051	35298051	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	gaacctgggcgccaagcggcGgggaccgcgcaccaccatca	14	16	1	0	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	LHX1-92	NM_005568	exon3	c.G542A	p.R181Q	AGCGGCGGGGACC	.	194	172	79	0	.	0	0	0	0	0	A	35298051	G	A	35298051	3	1	5	1	0	0	0	0	1	0	0	0	8793	1116	39	1	552	1	LHX1	17	35298051	Missense_Mutation	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10	14934364	35298051	45897159	471	915										
IKZF3	22806	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	37934013	37934013	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	gctttgatgtgtcttgcctcCgcacttgctagtttggaaaa	10	9	1	1	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	IKZF3-971	NM_012481	exon7	c.G717T	p.A239A	TGCCTCCGCACTT	.	105	42	95	0	.	0	0	0	0	0	A	37934013	C	A	37934013	2	1	5	1	0	0	0	0	0	0	0	1	7637	639	23	2		2	IKZF3	17	37934013	Silent	SNP	C	TCGA-OR-A5J5-01A-11D-A29I-10	2635962	37934013	43261197	472	916										
RAPGEFL1	51195	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	38345578	38345578	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	cttcaatattcagaggagccCgcggggcgtgaggattccct	13	11	2	2	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	RAPGEFL1-229	NM_016339	exon6	c.C447T	p.P149P	GGAGCCCGCGGGG	.	58	39	110	0	.	3	1	2	0	0	T	38345578	C	T	38345578	2	4	5	1	0	0	0	0	0	0	0	1	13084	639	23	1		1	RAPGEFL1	17	38345578	Silent	SNP	C	TCGA-OR-A5J5-01A-11D-A29I-10	411565	38345578	42849632	473	917										
SMARCE1	6605	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	38786977	38786977	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	gtgggttacctgtctccatcGgaatgttctcgtcgtctttc	10	11	3	0	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	SMARCE1-227	NM_003079	exon10	c.C1016T	p.P339L	TCCATCGGAATGT	.	71	63	121	0	.	0	0	0	0	0	A	38786977	G	A	38786977	3	1	5	1	0	0	0	0	1	0	0	0	14815	1116	39	1	227	1	SMARCE1	17	38786977	Missense_Mutation	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10	441399	38786977	42408233	474	918										
KRTAP4-3	85290	broad.mit.edu	37	chr17	39324139	39324140	+	In_Frame_Ins	INS	-	-	GCAGCAGGTGGTCAG													0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	gggcggcagcaggtggtcctINSgcagcagctgggtttgcagc					novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	KRTAP4-3-22	NM_033187	exon1	c.286_287insCTGACCACCTGCTGC	p.R96delinsLTTCCR	TGGTCCTGCAGCA	.	285	10	196	0	.	0	0	0	0	0	GCAGCAGGTGGTCAG	39324140	-	GCAGCAGGTGGTCAG	39324139	7	5	5	1	0	1	1	0	0	0	0	0	8574	1579	55	0	305	0	KRTAP4-3	17	39324139	In_Frame_Ins	INS	-	TCGA-OR-A5J5-01A-11D-A29I-10	537162	39324139	41871071	475	919										
KRT33B	3884	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	39521212	39521212	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	ggacagctgggagctgtagcGggcctcgctctctgtcagcg	16	12	2	0	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	KRT33B-90	NM_002279	exon6	c.C916T	p.R306C	TGTAGCGGGCCTC	.	107	104	83	0	.	0	0	0	0	0	A	39521212	G	A	39521212	3	1	5	1	0	0	0	0	1	0	0	0	8491	1116	39	1	306	1	KRT33B	17	39521212	Missense_Mutation	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10	197073	39521212	41673998	476	920										
KRT31	3881	bcgsc.ca	37	chr17	39551197	39551197	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	ctggtactcctggttctgccGctccaggtcactgcggatct	11	14	3	0	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	KRT31-90	NM_002277	exon6	c.C1000T	p.R334W	TCTGCCGCTCCAG	.	125	11	126	2	.	0	0	0	0	0	A	39551197	G	A	39551197	3	1	5	1	0	0	0	0	1	0	0	0	8488	1086	38	1	258	1	KRT31	17	39551197	Missense_Mutation	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10	29985	39551197	41644013	477	921										
KRT32	3882	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	39623234	39623234	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	cattctcctgctccagctgcCgcaccctcgtcaggtagctg	9	17	2	0	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	KRT32-90	NM_002278	exon1	c.G344A	p.R115Q	AGCTGCCGCACCC	.	86	38	89	0	.	0	0	0	0	0	T	39623234	C	T	39623234	3	4	5	1	0	0	0	0	1	0	0	0	8489	652	23	1	1030	1	KRT32	17	39623234	Missense_Mutation	SNP	C	TCGA-OR-A5J5-01A-11D-A29I-10	72037	39623234	41571976	478	922										
KRT14	3861	broad.mit.edu	37	chr17	39743071	39743071	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	gctggaggaggtgaactggcGgctgcaggtggtcatggtgc	20	7	1	1	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	KRT14-91	NM_000526	exon1	c.C16T	p.R6C	ACTGGCGGCTGCA	.	39	4	24	0	.	0	0	0	0	0	A	39743071	G	A	39743071	3	1	5	1	0	0	0	0	1	0	0	0	8472	1116	39	1	1434	1	KRT14	17	39743071	Missense_Mutation	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10	119837	39743071	41452139	479	923										
KRT17	3872	broad.mit.edu;bcgsc.ca	37	chr17	39775873	39775873	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	gtggtctggtggacctgctcGcgggaggagatgaccttgcc	17	10	1	2	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	KRT17-92	NM_000422	exon8	c.C1272T	p.R424R	CTGCTCGCGGGAG	.	707	20	493	0	.	3	3	0	0	0	A	39775873	G	A	39775873	2	1	5	1	0	0	0	0	0	0	0	1	8475	1074	38	1		1	KRT17	17	39775873	Silent	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10	32802	39775873	41419337	480	924										
STAT5B	6777	hgsc.bcm.edu;bcgsc.ca	37	chr17	40364022	40364023	+	Frame_Shift_Del	DEL	AC	AC	-													0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	cctgttgaactgggaccaggAcacagacaggccactgtagt					novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	AC	AC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	STAT5B-850	NM_012448	exon13	c.1659_1660del	p.553_554del	ACCAGGACACAGA	.	218	197	303	3	.	0	0	0	0	0	-	40364023	AC	-	40364022	7	5	5	1	0	1	0	1	0	0	0	0	15306	275	10	0	731	0	STAT5B	17	40364022	Frame_Shift_Del	DEL	AC	TCGA-OR-A5J5-01A-11D-A29I-10	588149	40364022	40831188	481	925										
CNTNAP1	8506	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	40838076	40838076	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	tgcgggtggaccgatttggcCgcgatgtaaatttcaccctg	13	10	1	0	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	CNTNAP1-525	NM_003632	exon6	c.C817T	p.R273C	TTTGGCCGCGATG	.	164	76	187	0	.	1	0	1	0	0	T	40838076	C	T	40838076	3	4	5	1	0	0	0	0	1	0	0	0	3652	652	23	1	839	1	CNTNAP1	17	40838076	Missense_Mutation	SNP	C	TCGA-OR-A5J5-01A-11D-A29I-10	474054	40838076	40357134	482	926										
WNK4	65266	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	40948205	40948205	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	aaattgaagatttgtacagcCggctggggaagcagccccca	12	10	0	2	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	WNK4-336	NM_032387	exon17	c.C3496T	p.R1166W	TACAGCCGGCTGG	.	52	47	21	0	.	2	0	2	0	0	T	40948205	C	T	40948205	3	4	5	1	0	0	0	0	1	0	0	0	17418	643	23	1	3562	1	WNK4	17	40948205	Missense_Mutation	SNP	C	TCGA-OR-A5J5-01A-11D-A29I-10	110129	40948205	40247005	483	927										
AOC3	8639	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr17	41004636	41004636	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	cccaggcccccaagacaataCgtgatgccttttgtgtgttt	9	12	0	2	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	AOC3-516	NM_003734	exon1	c.C1276T	p.R426C	ACAATACGTGATG	.	168	9	196	0	.	3	3	0	0	0	T	41004636	C	T	41004636	3	4	5	1	0	0	0	0	1	0	0	0	728	536	19	1	1278	1	AOC3	17	41004636	Missense_Mutation	SNP	C	TCGA-OR-A5J5-01A-11D-A29I-10	56431	41004636	40190574	484	928										
HDAC5	10014	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	42170066	42170066	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	gttttgcggagggggaagtcGtctcgactgtcgtagggccc	17	9	1	0	rs199980075		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	HDAC5-227	NM_001015053	exon7	c.C753T	p.D251D	GAAGTCGTCTCGA	.	69	60	81	0	G|0.999;A|0.000	8	0	8	0	0	A	42170066	G	A	42170066	2	1	5	1	0	0	0	0	0	0	0	1	7031	1136	40	1		1	HDAC5	17	42170066	Silent	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10	1165430	42170066	39025144	485	929										
TTLL6	284076	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	46878650	46878650	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	accaggtcctagggaaaaagCggaaatctttagggaacatc	11	8	1	0	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	TTLL6-90	NM_001130918	exon5	c.G578A	p.R193H	AAAAAGCGGAAAT	.	122	46	183	1	.	1	0	1	0	0	T	46878650	C	T	46878650	3	4	5	1	0	0	0	0	1	0	0	0	16769	768	27	1	2222	1	TTLL6	17	46878650	Missense_Mutation	SNP	C	TCGA-OR-A5J5-01A-11D-A29I-10	4708584	46878650	34316560	486	930										
ZNF652	22834	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	47395005	47395005	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	aagatggcacttgaccacgaCggctatcttcttgtgccatt	9	11	2	2	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	ZNF652-91	NM_001145365	exon2	c.G83A	p.R28H	CCACGACGGCTAT	.	218	120	254	0	.	0	0	0	0	0	T	47395005	C	T	47395005	3	4	5	1	0	0	0	0	1	0	0	0	18102	536	19	1	1757	1	ZNF652	17	47395005	Missense_Mutation	SNP	C	TCGA-OR-A5J5-01A-11D-A29I-10	516355	47395005	33800205	487	931										
YPEL2	388403	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	57430826	57430826	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	atatctgccctcctgccaccGgacctacagctgcattcact	6	17	2	0	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	YPEL2-90	NM_001005404	exon2	c.G56A	p.R19Q	GCCACCGGACCTA	.	123	112	149	0	.	0	0	0	0	0	A	57430826	G	A	57430826	3	1	5	1	0	0	0	0	1	0	0	0	17528	1116	39	1	58	1	YPEL2	17	57430826	Missense_Mutation	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10	10035821	57430826	23764384	488	932										
STRADA	92335	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr17	61780974	61780974	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	gaggctcagaactcccaatcGtccacctccagctcttccag	7	17	2	1	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	STRADA-547	NM_001003787	exon13	c.C1281T	p.D427D	CCAATCGTCCACC	.	86	23	132	0	.	15	11	4	0	0	A	61780974	G	A	61780974	2	1	5	1	0	0	0	0	0	0	0	1	15361	1136	40	1		1	STRADA	17	61780974	Silent	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10	4350148	61780974	19414236	489	933										
GRIN2C	2905	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	72843589	72843589	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	tcttgctggtggtgccccgcGggttctcgatgggcactgag	16	11	2	1	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	GRIN2C-228	NM_000835	exon9	c.C1859T	p.P620L	CCCCGCGGGTTCT	.	114	43	138	0	.	22	7	15	0	0	A	72843589	G	A	72843589	3	1	5	1	0	0	0	0	1	0	0	0	6802	1116	39	1	1862	1	GRIN2C	17	72843589	Missense_Mutation	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10	11062615	72843589	8351621	490	934										
ITGB4	3691	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	73750779	73750779	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	gcccacacgtgccccaccgcGtgctaagcacatcctccacc	7	21	0	0	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	ITGB4-227	NM_000213	exon34	c.G4441A	p.V1481M	CACCGCGTGCTAA	.	164	151	178	1	.	1	0	1	0	0	A	73750779	G	A	73750779	3	1	5	1	0	0	0	0	1	0	0	0	7918	1145	40	1	4571	1	ITGB4	17	73750779	Missense_Mutation	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10	907190	73750779	7444431	491	935										
ZACN	353174	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr17	74077421	74077421	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	tgagtgtcaagagggaatacGtagtttatgatctgaagacc	12	5	2	5	rs143316623	byfrequency	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	ZACN-90	NM_180990	exon6	c.G607A	p.V203I	GAATACGTAGTTT	.	195	14	221	0	G|0.998;A|0.002	84	73	11	0	0	A	74077421	G	A	74077421	3	1	5	1	0	0	0	0	1	0	0	0	17548	1145	40	1	629	1	ZACN	17	74077421	Missense_Mutation	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10	326642	74077421	7117789	492	936										
TNRC6C	57690	bcgsc.ca	37	chr17	76045635	76045635	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	gagagcacagaaccacaaacGtccacttctcagaatgtgtc	8	12	1	3	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	TNRC6C-24	NM_018996	exon4	c.G492A	p.T164T	ACAAACGTCCACT	.	42	37	73	2	.	0	0	0	0	0	A	76045635	G	A	76045635	2	1	5	1	0	0	0	0	0	0	0	1	16379	1132	40	1		1	TNRC6C	17	76045635	Silent	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10	1968214	76045635	5149575	493	937										
TMC6	11322	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	76118720	76118720	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	gaatattgtcctgctggaggCgggaggcccgcttctgcgtc	15	11	1	0	rs150505551	byfrequency	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	TMC6-90	NM_001127198	exon10	c.G1193A	p.R398H	TGGAGGCGGGAGG	.	120	38	61	0	C|1.000;T|0.000	1	1	0	0	0	T	76118720	C	T	76118720	3	4	5	1	0	0	0	0	1	0	0	0	16026	768	27	1	1268	1	TMC6	17	76118720	Missense_Mutation	SNP	C	TCGA-OR-A5J5-01A-11D-A29I-10	73085	76118720	5076490	494	938										
CYTH1	9267	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	76695039	76695039	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	gatgatggcaaaggagaggaCgtaacaagtatctaaagatg	13	4	1	3	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	CYTH1-228	NM_017456	exon8	c.G562A	p.V188I	AGAGGACGTAACA	.	104	48	144	0	.	0	0	0	0	0	T	76695039	C	T	76695039	3	4	5	1	0	0	0	0	1	0	0	0	4209	536	19	1	658	1	CYTH1	17	76695039	Missense_Mutation	SNP	C	TCGA-OR-A5J5-01A-11D-A29I-10	576319	76695039	4500171	495	939										
RPTOR	57521	bcgsc.ca	37	chr17	78599562	78599562	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	cctcccgatgtggtgaagacCacgccctgtgcacgcttgga	12	14	0	2	rs17848685	byfrequency	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	RPTOR-847	NM_001163034	exon2	c.C234G	p.T78T	GAAGACCACGCCC	.	170	7	147	0	C|0.836;G|0.164	0	0	0	0	0	G	78599562	C	G	78599562	2	3	5	1	0	0	0	0	0	0	0	1	13700	581	21	3		3	RPTOR	17	78599562	Silent	SNP	C	TCGA-OR-A5J5-01A-11D-A29I-10	1904523	78599562	2595648	496	940										
BAIAP2	10458	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	79031712	79031712	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	gcagccaaaggctactttgaCgccctggtgaagatggggga	15	9	0	3	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	BAIAP2-90	NM_001144888	exon3	c.C162T	p.D54D	CTTTGACGCCCTG	.	23	20	30	0	.	5	2	3	0	0	T	79031712	C	T	79031712	2	4	5	1	0	0	0	0	0	0	0	1	1302	535	19	1		1	BAIAP2	17	79031712	Silent	SNP	C	TCGA-OR-A5J5-01A-11D-A29I-10	432150	79031712	2163498	497	941										
AATK	9625	hgsc.bcm.edu	37	chr17	79096115	79096115	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	gcagtcagggtcgtggccggCggcgggtgcggcctcctcta	18	13	2	0	rs61738821	byfrequency	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	AATK-933	NM_001080395	exon11	c.G1621A	p.A541T	GGCCGGCGGCGGG	.	4	4	0	0	C|0.850;T|0.150	0	0	0	0	0	T	79096115	C	T	79096115	3	4	5	1	0	0	0	0	1	0	0	0	26	768	27	1	2519	1	AATK	17	79096115	Missense_Mutation	SNP	C	TCGA-OR-A5J5-01A-11D-A29I-10	64403	79096115	2099095	498	942										
SLC38A10	124565	hgsc.bcm.edu	37	chr17	79219637	79219637	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	gtccggcctctggccccccgGgacagctcgtttgagcccca	12	18	1	1	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	SLC38A10-70	NM_001037984	exon16	c.C3079A	p.P1027T	CCCCCGGGACAGC	.	96	90	1	0	.	53	5	47	1	0	T	79219637	G	T	79219637	3	4	5	1	0	0	0	0	1	0	0	0	14637	1232	43	3	284	3	SLC38A10	17	79219637	Missense_Mutation	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10	123522	79219637	1975573	499	943										
DUS1L	64118	bcgsc.ca;mdanderson.org	37	chr17	80019852	80019852	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	ccttggtgcgtccgtgcaccGtcagcaactaggacagagca	12	13	1	1	rs138482688		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	DUS1L-91	NM_022156	exon6	c.C518T	p.T173M	TGCACCGTCAGCA	.	63	59	41	1	G|1.000;A|0.000	0	0	0	0	0	A	80019852	G	A	80019852	3	1	5	1	0	0	0	0	1	0	0	0	4816	1145	40	1	939	1	DUS1L	17	80019852	Missense_Mutation	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10	800215	80019852	1175358	500	944										
EMILIN2	84034	ucsc.edu;bcgsc.ca;mdanderson.org	37	chr18	2891551	2891551	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	tttacattgaggaaacccttCggggcgccattaatggagag	12	8	0	2	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	EMILIN2-93	NM_032048	exon4	c.C1426T	p.R476W	ACCCTTCGGGGCG	.	117	48	152	2	.	0	0	0	0	0	T	2891551	C	T	2891551	3	4	5	1	0	0	0	0	1	0	0	0	5107	875	31	1	1440	1	EMILIN2	18	2891551	Missense_Mutation	SNP	C	TCGA-OR-A5J5-01A-11D-A29I-10		2891551	75185697	501	945										
DSG2	1829	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr18	29104699	29104699	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	ttgaagaaaatcaagtcaacGtagaagttacgcgcataaaa	8	6	2	3	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	DSG2-563	NM_001943	exon8	c.G862A	p.V288I	GTCAACGTAGAAG	.	173	137	250	0	.	0	0	0	0	0	A	29104699	G	A	29104699	3	1	5	1	0	0	0	0	1	0	0	0	4788	1145	40	1	892	1	DSG2	18	29104699	Missense_Mutation	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10	26213148	29104699	48972549	502	946										
MBD1	4152	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr18	47796100	47796100	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	ggttccaggccatcctcgtgGgttccagctcgtgctcgtgg	14	13	0	0	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	MBD1-228	NM_001204136	exon16	c.C1867A	p.P623T	CTCGTGGGTTCCA	.	144	51	177	0	.	46	17	29	0	0	T	47796100	G	T	47796100	3	4	5	1	0	0	0	0	1	0	0	0	9370	1232	43	3	104	3	MBD1	18	47796100	Missense_Mutation	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10	18691401	47796100	30281148	503	947										
CNDP2	55748	bcgsc.ca	37	chr18	72178161	72178161	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	ttctttaaggatgtggactaTgtctgcatttctgacaatta	8	6	3	1	rs2278159	byfrequency	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	CNDP2-93	NM_018235	exon6	c.T570C	p.Y190Y	GGACTATGTCTGC	.	231	7	266	0	T|0.825;C|0.175	2	2	0	0	0	C	72178161	T	C	72178161	2	2	5	1	0	0	0	0	0	0	0	1	3600	1471	51	4		4	CNDP2	18	72178161	Silent	SNP	T	TCGA-OR-A5J5-01A-11D-A29I-10	24382061	72178161	5899087	504	948										
SHC2	25759	hgsc.bcm.edu;broad.mit.edu	37	chr19	422360	422360	+	Frame_Shift_Del	DEL	G	G	-													0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	ccacaggggcccggcgggtaGgggggctgggccactggtcc					novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	SHC2-392	NM_012435	exon11	c.1406delC	p.P469fs	CGGGTAGGGGGGC	.	148	33	7	0	.	0	0	0	0	0	-	422360	G	-	422360	7	5	5	1	0	1	0	1	0	0	0	0	14306	1000	35	0	350	0	SHC2	19	422360	Frame_Shift_Del	DEL	G	TCGA-OR-A5J5-01A-11D-A29I-10		422360	58706623	505	949										
SHC2	25759	hgsc.bcm.edu	37	chr19	436677	436677	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	ggacggcatgtggtggttggCgatgacctgtggcggcagga	20	7	0	1	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	SHC2-392	NM_012435	exon5	c.G727A	p.A243T	GGTTGGCGATGAC	.	156	39	6	0	.	0	0	0	0	0	T	436677	C	T	436677	3	4	5	1	0	0	0	0	1	0	0	0	14306	768	27	1	1053	1	SHC2	19	436677	Missense_Mutation	SNP	C	TCGA-OR-A5J5-01A-11D-A29I-10	14317	436677	58692306	506	950										
CFD	1675	hgsc.bcm.edu	37	chr19	863169	863169	+	Frame_Shift_Del	DEL	C	C	-													0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	ggctcgcgcgtttgcggcaaCcgcaagaagcccgggatcta					novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	CFD-514	NM_001928	exon5	c.693delC	p.N231fs	CGGCAACCGCAAG	.	27	14	1	0	.	0	0	0	0	0	-	863169	C	-	863169	7	5	5	1	0	1	0	1	0	0	0	0	3287	506	18	0	711	0	CFD	19	863169	Frame_Shift_Del	DEL	C	TCGA-OR-A5J5-01A-11D-A29I-10	426492	863169	58265814	507	951										
GRIN3B	116444	hgsc.bcm.edu	37	chr19	1004687	1004687	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	gcgggacggccagctggactTggaaccgggaggtgcctctg	18	11	1	0	rs12978900	byfrequency	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	GRIN3B-90	NM_138690	exon3	c.T1187C	p.L396S	TGGACTTGGAACC	.	15	5	1	0	T|0.967;C|0.033	0	0	0	0	0	C	1004687	T	C	1004687	3	2	5	1	0	0	0	0	1	0	0	0	6805	1821	63	4	1197	4	GRIN3B	19	1004687	Missense_Mutation	SNP	T	TCGA-OR-A5J5-01A-11D-A29I-10	141518	1004687	58124296	508	952										
ABCA7	10347	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	1043419	1043419	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	gcctgaagcctctgatcctcGggaagctactctttgcacca	9	14	2	2	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	ABCA7-98	NM_019112	exon9	c.G877A	p.G293R	ATCCTCGGGAAGC	.	330	65	148	0	.	2	2	0	0	0	A	1043419	G	A	1043419	3	1	5	1	0	0	0	0	1	0	0	0	37	1116	39	1	907	1	ABCA7	19	1043419	Missense_Mutation	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10	38732	1043419	58085564	509	953										
REEP6	92840	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	1496349	1496349	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	gctctcatgctgtatcagcgCgtcgtgcgtccgctgttcct	11	14	2	0	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	REEP6-90	NM_138393	exon4	c.C414T	p.R138R	TCAGCGCGTCGTG	.	160	33	26	0	.	181	143	37	1	0	T	1496349	C	T	1496349	2	4	5	1	0	0	0	0	0	0	0	1	13244	755	27	1		1	REEP6	19	1496349	Silent	SNP	C	TCGA-OR-A5J5-01A-11D-A29I-10	452930	1496349	57632634	510	954										
FZR1	51343	hgsc.bcm.edu	37	chr19	3532525	3532525	+	Frame_Shift_Del	DEL	G	G	-													0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	cagcacgggctgctggcctcGgggggcggcacagctgaccg					novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	FZR1-227	NM_001136198	exon10	c.1119delG	p.S373fs	GGCCTCGGGGGGC	.	259	125	28	1	.	0	0	0	0	0	-	3532525	G	-	3532525	7	5	5	1	0	1	0	1	0	0	0	0	6157	1103	39	0	1157	0	FZR1	19	3532525	Frame_Shift_Del	DEL	G	TCGA-OR-A5J5-01A-11D-A29I-10	2036176	3532525	55596458	511	955										
PTPRS	5802	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	5206812	5206812	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	gcatagtggtcaaagcttccGaggtactccagtgccgcctg	12	12	1	0	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	PTPRS-357	NM_002850	exon38	c.C5820T	p.L1940L	GCTTCCGAGGTAC	.	221	51	114	0	.	103	77	26	0	0	A	5206812	G	A	5206812	2	1	5	1	0	0	0	0	0	0	0	1	12846	1045	37	1		1	PTPRS	19	5206812	Silent	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10	1674287	5206812	53922171	512	956										
VAV1	7409	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	6833562	6833562	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	taccttctatcagggctaccGctgccatcggtgccgggcat	11	14	2	0	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	VAV1-1276	NM_005428	exon17	c.G1634A	p.R545H	GCTACCGCTGCCA	.	63	27	52	0	.	0	0	0	0	0	A	6833562	G	A	6833562	3	1	5	1	0	0	0	0	1	0	0	0	17169	1087	38	1	1700	1	VAV1	19	6833562	Missense_Mutation	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10	1626750	6833562	52295421	513	957										
INSR	3643	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	7267587	7267587	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	ctcgatgcggacagaaccccGggtgatgttcatcaggttgt	13	10	2	2	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	INSR-1381	NM_000208	exon2	c.C421T	p.R141W	AACCCCGGGTGAT	.	466	122	323	3	.	1	0	1	0	0	A	7267587	G	A	7267587	3	1	5	1	0	0	0	0	1	0	0	0	7794	1115	39	1	3811	1	INSR	19	7267587	Missense_Mutation	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10	434025	7267587	51861396	514	958										
CD320	51293	hgsc.bcm.edu	37	chr19	8369919	8369921	+	In_Frame_Del	DEL	CTC	CTC	-													0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	gggcgtggccactcactgcaCtcctcctcatcgctgccatc					novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	CTC	CTC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	CD320-90	NM_016579	exon2	c.262_264del	p.88_88del	ACTGCACTCCTCC	.	50	21	2	1	.	0	0	0	0	0	-	8369921	CTC	-	8369919	7	5	5	1	0	1	0	1	0	0	0	0	3010	564	20	0	600	0	CD320	19	8369919	In_Frame_Del	DEL	CTC	TCGA-OR-A5J5-01A-11D-A29I-10	1102332	8369919	50759064	515	959										
CD320	51293	hgsc.bcm.edu	37	chr19	8373152	8373152	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	ctgttcgccacgctccaaccTgcgccatccaaccgccgctc	7	21	0	0	rs2232775	byfrequency	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	CD320-90	NM_001165895	exon1	c.A23G	p.Q8R	CCAACCTGCGCCA	.	10	10	0	0	T|0.852;C|0.148	24	1	23	0	0	C	8373152	T	C	8373152	3	2	5	1	0	0	0	0	1	0	0	0	3010	1580	55	4	845	4	CD320	19	8373152	Missense_Mutation	SNP	T	TCGA-OR-A5J5-01A-11D-A29I-10	3233	8373152	50755831	516	960										
ZNF414	84330	hgsc.bcm.edu	37	chr19	8576670	8576670	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	aagggttccagcagcgggaaCggcaggcccggcgctgatgc	17	12	0	1	rs7175	byfrequency;by2hit2allele;by1000genomes	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	ZNF414-90	NM_032370	exon5	c.G705A	p.P235P	CGGGAACGGCAGG	.	13	9	0	0	C|0.788;T|0.212	8	1	7	0	0	T	8576670	C	T	8576670	2	4	5	1	0	0	0	0	0	0	0	1	17928	523	19	1		1	ZNF414	19	8576670	Silent	SNP	C	TCGA-OR-A5J5-01A-11D-A29I-10	203518	8576670	50552313	517	961										
ACTL9	284382	hgsc.bcm.edu	37	chr19	8807994	8807994	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	gcagcagctctgcccggaagCgaccctcgaagccggtgaag	14	14	1	1	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	ACTL9-154	NM_178525	exon1	c.G1058A	p.R353H	CGGAAGCGACCCT	.	97	28	5	0	.	0	0	0	0	0	T	8807994	C	T	8807994	3	4	5	1	0	0	0	0	1	0	0	0	203	768	27	1	196	1	ACTL9	19	8807994	Missense_Mutation	SNP	C	TCGA-OR-A5J5-01A-11D-A29I-10	231324	8807994	50320989	518	962										
MUC16	94025	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	9049154	9049154	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	ggctggtctgtgcaggatgcGtgaccaatgaaactgttgta	14	7	1	2	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	MUC16-566	NM_024690	exon5	c.C32477T	p.T10826M	GGATGCGTGACCA	.	418	94	280	0	.	0	0	0	0	0	A	9049154	G	A	9049154	3	1	5	1	0	0	0	0	1	0	0	0	10001	1145	40	1	11366	1	MUC16	19	9049154	Missense_Mutation	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10	241160	9049154	50079829	519	963										
COL5A3	50509	hgsc.bcm.edu	37	chr19	10077378	10077378	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	actggaagcgggactgggacGaagcgccggcgcctgcgcag	18	12	0	0	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	COL5A3-99	NM_015719	exon63	c.C4503T	p.F1501F	TGGGACGAAGCGC	.	21	4	2	0	.	1	1	0	0	0	A	10077378	G	A	10077378	2	1	5	1	0	0	0	0	0	0	0	1	3704	1049	37	1		1	COL5A3	19	10077378	Silent	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10	1028224	10077378	49051605	520	964										
EIF3G	8666	broad.mit.edu	37	chr19	10227826	10227826	+	Frame_Shift_Del	DEL	G	G	-													0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	gtggtggccacattgggtccGggggggtcaaactctgagtt					novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	EIF3G-68	NM_003755	exon6	c.339delC	p.P113fs	GGGTCCGGGGGGG	.	159	10	79	0	.	0	0	0	0	0	-	10227826	G	-	10227826	7	5	5	1	0	1	0	1	0	0	0	0	5030	1103	39	0	647	0	EIF3G	19	10227826	Frame_Shift_Del	DEL	G	TCGA-OR-A5J5-01A-11D-A29I-10	150448	10227826	48901157	521	965										
TYK2	7297	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	10476463	10476463	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	atctgctgggagagtcggccCggctggaagtcccgcaggaa	16	11	1	1	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	TYK2-1009	NM_003331	exon7	c.G741A	p.P247P	TCGGCCCGGCTGG	.	262	146	36	0	.	16	10	6	0	0	T	10476463	C	T	10476463	2	4	5	1	0	0	0	0	0	0	0	1	16848	639	23	1		1	TYK2	19	10476463	Silent	SNP	C	TCGA-OR-A5J5-01A-11D-A29I-10	248637	10476463	48652520	522	966										
FBXW9	84261	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	12805414	12805414	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	acctgactcctcacctcatgGgtactatttcgcttagtgcc	7	14	2	1	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	FBXW9-227	NM_032301	exon3	c.C672T	p.T224T	CTCATGGGTACTA	.	254	126	143	0	.	0	0	0	0	0	A	12805414	G	A	12805414	2	1	5	1	0	0	0	0	0	0	0	1	5790	1219	43	3		3	FBXW9	19	12805414	Silent	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10	2328951	12805414	46323569	523	967										
TNPO2	30000	broad.mit.edu;bcgsc.ca	37	chr19	12816346	12816346	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	tctgcaccagggtgacacagCgctggtagacgggctcacag	14	12	2	2	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	TNPO2-227	NM_013433	exon16	c.G1823A	p.R608H	ACACAGCGCTGGT	.	532	12	283	1	.	25	23	2	0	0	T	12816346	C	T	12816346	3	4	5	1	0	0	0	0	1	0	0	0	16373	768	27	1	906	1	TNPO2	19	12816346	Missense_Mutation	SNP	C	TCGA-OR-A5J5-01A-11D-A29I-10	10932	12816346	46312637	524	968										
CACNA1A	773	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	13356010	13356010	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	acttaccccaaactcagtcaCgaggatatcggtgatgctgc	9	12	2	1	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	CACNA1A-67	NM_001127221	exon31	c.G4939A	p.V1647M	CAGTCACGAGGAT	.	176	83	111	0	.	0	0	0	0	0	T	13356010	C	T	13356010	3	4	5	1	0	0	0	0	1	0	0	0	2544	536	19	1	2754	1	CACNA1A	19	13356010	Missense_Mutation	SNP	C	TCGA-OR-A5J5-01A-11D-A29I-10	539664	13356010	45772973	525	969										
CACNA1A	773	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	13370425	13370425	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	gtgaagagggtcagcagagcCcacagcacattgtcgtaatg	13	9	1	3	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	CACNA1A-67	NM_001127221	exon27	c.G4344T	p.W1448C	CAGAGCCCACAGC	.	221	115	175	0	.	0	0	0	0	0	A	13370425	C	A	13370425	3	1	5	1	0	0	0	0	1	0	0	0	2544	624	22	3	3365	3	CACNA1A	19	13370425	Missense_Mutation	SNP	C	TCGA-OR-A5J5-01A-11D-A29I-10	14415	13370425	45758558	526	970										
NOTCH3	4854	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	15276714	15276714	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	ccgcttggctgcatcagcacGggcataacgggcagccaggt	14	13	1	0	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	NOTCH3-855	NM_000435	exon30	c.C5551T	p.R1851C	CAGCACGGGCATA	.	239	32	68	0	.	2	2	0	0	0	A	15276714	G	A	15276714	3	1	5	1	0	0	0	0	1	0	0	0	10579	1116	39	1	1430	1	NOTCH3	19	15276714	Missense_Mutation	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10	1906289	15276714	43852269	527	971										
NOTCH3	4854	ucsc.edu	37	chr19	15292437	15292437	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	cagtggaagcctccgtagccTggcgggcaggtgcaggtgaa	17	10	0	1	rs1043997	byfrequency	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	NOTCH3-855	NM_000435	exon17	c.A2742G	p.P914P	GTAGCCTGGCGGG	.	419	174	18	4	T|0.238;C|0.762	1	1	0	0	0	C	15292437	T	C	15292437	2	2	5	1	0	0	0	0	0	0	0	1	10579	1567	55	4		4	NOTCH3	19	15292437	Silent	SNP	T	TCGA-OR-A5J5-01A-11D-A29I-10	15723	15292437	43836546	528	972										
OR10H1	26539	bcgsc.ca	37	chr19	15918802	15918802	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	gtgggggaagacagagaagcCgacgaggatgaattgggtca	18	5	1	3	rs4808383	byfrequency	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	OR10H1-68	NM_013940	exon1	c.G46C	p.G16R	AGAAGCCGACGAG	.	322	8	177	1	C|0.832;G|0.168	0	0	0	0	0	G	15918802	C	G	15918802	3	3	5	1	0	0	0	0	1	0	0	0	10934	652	23	2	914	2	OR10H1	19	15918802	Missense_Mutation	SNP	C	TCGA-OR-A5J5-01A-11D-A29I-10	626365	15918802	43210181	529	973										
C19orf44	84167	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	16611814	16611814	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	tgaaagagaaccctgtgctcGggagtggacccaggcttgcc	14	11	0	2	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	C19orf44-90	NM_032207	exon2	c.G211A	p.G71R	GTGCTCGGGAGTG	.	109	59	77	0	.	0	0	0	0	0	A	16611814	G	A	16611814	3	1	5	1	0	0	0	0	1	0	0	0	1933	1116	39	1	213	1	C19orf44	19	16611814	Missense_Mutation	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10	693012	16611814	42517169	530	974										
SIN3B	23309	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	16986968	16986968	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	ggaacctgtcctcccgctgcGtccgcgctgctagggagacc	13	16	0	1	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	SIN3B-228	NM_015260	exon16	c.G2791A	p.V931I	CGCTGCGTCCGCG	.	265	137	55	0	.	45	21	24	0	0	A	16986968	G	A	16986968	3	1	5	1	0	0	0	0	1	0	0	0	14361	1145	40	1	2853	1	SIN3B	19	16986968	Missense_Mutation	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10	375154	16986968	42142015	531	975										
MYO9B	4650	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	17283599	17283599	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	gaagaacatggactacatgcGgccagacatcgtggccctgc	12	12	0	2	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	MYO9B-67	NM_001130065	exon13	c.G1967A	p.R656Q	ACATGCGGCCAGA	.	144	29	56	0	.	3	3	0	0	0	A	17283599	G	A	17283599	3	1	5	1	0	0	0	0	1	0	0	0	10113	1116	39	1	2013	1	MYO9B	19	17283599	Missense_Mutation	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10	296631	17283599	41845384	532	976										
ANO8	57719	hgsc.bcm.edu	37	chr19	17435647	17435647	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	ccatctggccgggcctgcccGcccgccccgttggacccagg	13	20	1	0	rs150818557	byfrequency	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	ANO8-93	NM_020959	exon17	c.C3210T	p.G1070G	CTGCCCGCCCGCC	.	58	35	0	0	G|0.998;A|0.002	28	17	11	0	0	A	17435647	G	A	17435647	2	1	5	1	0	0	0	0	0	0	0	1	703	1074	38	1		1	ANO8	19	17435647	Silent	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10	152048	17435647	41693336	533	977										
ANO8	57719	broad.mit.edu;bcgsc.ca	37	chr19	17441307	17441307	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	cgtgatggggctgatacgtcGcacgccctgatggtgggcaa	16	10	0	3	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	ANO8-93	NM_020959	exon9	c.C1000T	p.R334X	TACGTCGCACGCC	.	186	9	49	0	.	3	3	0	0	0	A	17441307	G	A	17441307	4	1	5	1	0	0	0	0	0	1	0	0	703	1095	38	1	2738	1	ANO8	19	17441307	Nonsense_Mutation	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10	5660	17441307	41687676	534	978										
PIK3R2	5296	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	18279340	18279340	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	tcaacgagtggctggggattAaaaatgagactgaggagtga	15	4	1	3	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	PIK3R2-1311	NM_005027	exon14	c.A1792G	p.K598E	GGGATTAAAAATG	.	62	31	55	0	.	48	27	20	0	1	G	18279340	A	G	18279340	3	3	5	1	0	0	0	0	1	0	0	0	11948	363	13	4	1842	4	PIK3R2	19	18279340	Missense_Mutation	SNP	A	TCGA-OR-A5J5-01A-11D-A29I-10	838033	18279340	40849643	535	979										
ISYNA1	51477	broad.mit.edu	37	chr19	18546481	18546481	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	acgtacggcacatacttgatGaccacctggagtgcagcagg	12	11	0	2	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	ISYNA1-92	NM_016368	exon9	c.C1146T	p.V382V	CTTGATGACCACC	.	73	3	41	0	.	12	12	0	0	0	A	18546481	G	A	18546481	2	1	5	1	0	0	0	0	0	0	0	1	7888	1277	45	3		3	ISYNA1	19	18546481	Silent	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10	267141	18546481	40582502	536	980										
FKBP8	23770	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	18650417	18650417	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	ctccggctcctcctgcacccGtgtgccattctccagcgacg	9	19	1	0	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	FKBP8-227	NM_012181	exon3	c.C406T	p.R136W	GCACCCGTGTGCC	.	173	80	19	0	.	144	85	59	0	0	A	18650417	G	A	18650417	3	1	5	1	0	0	0	0	1	0	0	0	5933	1144	40	1	863	1	FKBP8	19	18650417	Missense_Mutation	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10	103936	18650417	40478566	537	981										
NCAN	1463	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	19360612	19360612	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	atgcggcgacaccaccaccaCcaccaacaccaccaccagca	5	21	0	0	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	NCAN-94	NM_004386	exon15	c.C3858A	p.H1286Q	CCACCACCACCAA	.	365	102	259	0	.	0	0	0	0	0	A	19360612	C	A	19360612	3	1	5	1	0	0	0	0	1	0	0	0	10233	506	18	3	3912	3	NCAN	19	19360612	Missense_Mutation	SNP	C	TCGA-OR-A5J5-01A-11D-A29I-10	710195	19360612	39768371	538	982										
ZNF429	353088	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	21720662	21720662	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	aagaatgtggcaaagcttttAatcggtcctcaagacttact	8	8	1	2	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	ZNF429-516	NM_001001415	exon4	c.A1807C	p.N603H	GCTTTTAATCGGT	.	49	13	47	0	.	2	1	1	0	0	C	21720662	A	C	21720662	3	2	5	1	0	0	0	0	1	0	0	0	17939	362	13	5	1821	5	ZNF429	19	21720662	Missense_Mutation	SNP	A	TCGA-OR-A5J5-01A-11D-A29I-10	2360050	21720662	37408321	539	983										
GPATCH1	55094	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	33616095	33616095	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	ggccaagaaagagcacaggcGgaagaaagagaaggtgagag	17	5	0	5	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	GPATCH1-91	NM_018025	exon18	c.G2606A	p.R869Q	ACAGGCGGAAGAA	.	183	39	101	0	.	0	0	0	0	0	A	33616095	G	A	33616095	3	1	5	1	0	0	0	0	1	0	0	0	6610	1116	39	1	2676	1	GPATCH1	19	33616095	Missense_Mutation	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10	11895433	33616095	25512888	540	984										
MLL4	8085	broad.mit.edu;bcgsc.ca	37	chr19	36217156	36217156	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	gatctgttcagcctgtgtgcGctgtaagagctgtggggcaa	15	8	2	1	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	MLL4-697	NM_014727	exon14	c.G3905A	p.R1302H	GTGTGCGCTGTAA	.	499	18	303	1	.	14	14	0	0	0	A	36217156	G	A	36217156	3	1	5	1	0	0	0	0	1	0	0	0	9651	1087	38	1	3959	1	MLL4	19	36217156	Missense_Mutation	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10	2601061	36217156	22911827	541	985										
MLL4	8085	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	36222925	36222925	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	tgcggccagattcaggcagcGcccctcctccagccccccgt	10	20	1	1	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	MLL4-697	NM_014727	exon27	c.G5554A	p.A1852T	GGCAGCGCCCCTC	.	73	18	35	0	.	30	18	12	0	0	A	36222925	G	A	36222925	3	1	5	1	0	0	0	0	1	0	0	0	9651	1087	38	1	5660	1	MLL4	19	36222925	Missense_Mutation	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10	5769	36222925	22906058	542	986										
LRFN3	79414	hgsc.bcm.edu	37	chr19	36430696	36430696	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	aaccggctgacctcactgggCgagggccagctgcgcggcct	15	15	1	1	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	LRFN3-90	NM_024509	exon2	c.C369T	p.G123G	ACTGGGCGAGGGC	.	17	10	1	0	.	0	0	0	0	0	T	36430696	C	T	36430696	2	4	5	1	0	0	0	0	0	0	0	1	8966	755	27	1		1	LRFN3	19	36430696	Silent	SNP	C	TCGA-OR-A5J5-01A-11D-A29I-10	207771	36430696	22698287	543	987										
ZNF781	163115	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	38160733	38160733	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	cagtatgaattctttgatgtCgaataagatgtgcactccgc	9	8	1	3	rs12460961	byhapmap	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	ZNF781-90	NM_152605	exon4	c.G317A	p.R106Q	TGATGTCGAATAA	.	66	34	46	0	C|1.000;|0.000	4	1	3	0	0	T	38160733	C	T	38160733	3	4	5	1	0	0	0	0	1	0	0	0	18191	884	31	1	670	1	ZNF781	19	38160733	Missense_Mutation	SNP	C	TCGA-OR-A5J5-01A-11D-A29I-10	1730037	38160733	20968250	544	988										
SIPA1L3	23094	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	38591715	38591715	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	tgccggaagcacaaggtgggCatcctctattgcaaggccgg	14	11	1	0	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	SIPA1L3-91	NM_015073	exon6	c.C1878T	p.G626G	GGTGGGCATCCTC	.	177	32	103	0	.	0	0	0	0	0	T	38591715	C	T	38591715	2	4	5	1	0	0	0	0	0	0	0	1	14366	697	25	3		3	SIPA1L3	19	38591715	Silent	SNP	C	TCGA-OR-A5J5-01A-11D-A29I-10	430982	38591715	20537268	545	989										
DPF1	8193	hgsc.bcm.edu	37	chr19	38713189	38713189	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	ccagccctcccggcggtaccCggcccgcggtgggtcttctc	13	19	2	0	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	DPF1-90	NM_001135155	exon2	c.G270A	p.P90P	GGTACCCGGCCCG	.	76	44	3	0	.	0	0	0	0	0	T	38713189	C	T	38713189	2	4	5	1	0	0	0	0	0	0	0	1	4727	666	23	1		1	DPF1	19	38713189	Silent	SNP	C	TCGA-OR-A5J5-01A-11D-A29I-10	121474	38713189	20415794	546	990										
RYR1	6261	broad.mit.edu	37	chr19	38966036	38966036	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	ctgccccgactccctcacgaCgtggtgcctgcagacaaccg	10	18	1	1	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	RYR1-100	NM_001042723	exon29	c.C4239T	p.D1413D	TCACGACGTGGTG	.	212	6	53	0	.	0	0	0	0	0	T	38966036	C	T	38966036	2	4	5	1	0	0	0	0	0	0	0	1	13803	535	19	1		1	RYR1	19	38966036	Silent	SNP	C	TCGA-OR-A5J5-01A-11D-A29I-10	252847	38966036	20162947	547	991										
RYR1	6261	hgsc.bcm.edu;broad.mit.edu	37	chr19	38993359	38993359	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	atcgaggactgcctcatgtcGctctgcaggtggagcggggc	16	11	2	0	rs201827284		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	RYR1-100	NM_001042723	exon48	c.G7827A	p.S2609S	CATGTCGCTCTGC	.	82	37	15	0	G|0.999;A|0.000	0	0	0	0	0	A	38993359	G	A	38993359	2	1	5	1	0	0	0	0	0	0	0	1	13803	1074	38	1		1	RYR1	19	38993359	Silent	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10	27323	38993359	20135624	548	992										
PAK4	10298	hgsc.bcm.edu	37	chr19	39663757	39663757	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	cccagggaaggcaggcagccGaggccggttcgccggtcaca	16	14	1	0	rs56099436		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	PAK4-957	NM_001014832	exon3	c.G404A	p.R135Q	GCAGCCGAGGCCG	.	10	7	0	0	G|0.989;A|0.011	14	6	8	0	0	A	39663757	G	A	39663757	3	1	5	1	0	0	0	0	1	0	0	0	11432	1058	37	1	410	1	PAK4	19	39663757	Missense_Mutation	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10	670398	39663757	19465226	549	993										
SYCN	342898	hgsc.bcm.edu	37	chr19	39694831	39694831	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	gtcggcggaggcggggcaggCgccctgggcgcaaggcacgg	22	12	0	0	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	SYCN-68	NM_001080468	exon1	c.G64A	p.A22T	GGCAGGCGCCCTG	.	40	19	2	0	.	0	0	0	0	0	T	39694831	C	T	39694831	3	4	5	1	0	0	0	0	1	0	0	0	15467	768	27	1	348	1	SYCN	19	39694831	Missense_Mutation	SNP	C	TCGA-OR-A5J5-01A-11D-A29I-10	31074	39694831	19434152	550	994										
LRFN1	57622	hgsc.bcm.edu	37	chr19	39805167	39805167	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	gtggcgcaggtctctaagtcGtcctcgcgggtcagccgccg	15	14	2	0	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	LRFN1-70	NM_020862	exon1	c.C810T	p.D270D	TAAGTCGTCCTCG	.	58	27	3	0	.	5	1	4	0	0	A	39805167	G	A	39805167	2	1	5	1	0	0	0	0	0	0	0	1	8964	1136	40	1		1	LRFN1	19	39805167	Silent	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10	110336	39805167	19323816	551	995										
FCGBP	8857	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr19	40412003	40412003	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	gtggcaaagggaatcacatcCggggccagggtagaaggtct	16	8	2	1	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	FCGBP-98	NM_003890	exon7	c.G3625A	p.G1209R	CACATCCGGGGCC	.	169	21	14	0	.	0	0	0	0	0	T	40412003	C	T	40412003	3	4	5	1	0	0	0	0	1	0	0	0	5797	661	23	1	12712	1	FCGBP	19	40412003	Missense_Mutation	SNP	C	TCGA-OR-A5J5-01A-11D-A29I-10	606836	40412003	18716980	552	996										
FCGBP	8857	hgsc.bcm.edu	37	chr19	40430566	40430566	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	gccacacacccggccttcccGcctaccacctggcagcgctg	9	21	0	0	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	FCGBP-98	NM_003890	exon3	c.C1377T	p.G459G	CTTCCCGCCTACC	.	40	14	1	0	.	0	0	0	0	0	A	40430566	G	A	40430566	2	1	5	1	0	0	0	0	0	0	0	1	5797	1074	38	1		1	FCGBP	19	40430566	Silent	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10	18563	40430566	18698417	553	997										
B3GNT8	374907	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	41931793	41931793	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	taggctgggtagccaccttcGaagaaggactcgggcacata	13	10	0	1	rs147647792		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	B3GNT8-90	NM_198540	exon3	c.C891T	p.F297F	ACCTTCGAAGAAG	.	166	56	59	1	G|1.000;A|0.000	1	1	0	0	0	A	41931793	G	A	41931793	2	1	5	1	0	0	0	0	0	0	0	1	1264	1049	37	1		1	B3GNT8	19	41931793	Silent	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10	1501227	41931793	17197190	554	998										
IRGC	56269	hgsc.bcm.edu	37	chr19	44223766	44223766	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	ctctattcccagtcgtccgaCggcgccatgcgggtggcccg	13	16	1	0	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	IRGC-70	NM_019612	exon2	c.C1056T	p.D352D	GTCCGACGGCGCC	.	84	48	1	0	.	0	0	0	0	0	T	44223766	C	T	44223766	2	4	5	1	0	0	0	0	0	0	0	1	7859	535	19	1		1	IRGC	19	44223766	Silent	SNP	C	TCGA-OR-A5J5-01A-11D-A29I-10	2291973	44223766	14905217	555	999										
ZNF296	162979	broad.mit.edu	37	chr19	45578983	45578983	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	ttactcacctgagccctggcCgcggctggggcctctgaaga	13	14	2	3	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	ZNF296-90	NM_145288	exon2	c.G436A	p.G146S	CCTGGCCGCGGCT	.	178	5	88	0	.	0	0	0	0	0	T	45578983	C	T	45578983	3	4	5	1	0	0	0	0	1	0	0	0	17865	652	23	1	999	1	ZNF296	19	45578983	Missense_Mutation	SNP	C	TCGA-OR-A5J5-01A-11D-A29I-10	1355217	45578983	13550000	556	1000										
KLC3	147700	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	45852157	45852157	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	ggcagagcccctgtgccagcGcgctttggagatccgagaga	15	12	0	3	rs190310418	by1000genomes	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	KLC3-91	NM_177417	exon7	c.G947A	p.R316H	GCCAGCGCGCTTT	.	122	29	47	0	G|0.999;A|0.000	7	5	2	0	0	A	45852157	G	A	45852157	3	1	5	1	0	0	0	0	1	0	0	0	8356	1087	38	1	969	1	KLC3	19	45852157	Missense_Mutation	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10	273174	45852157	13276826	557	1001										
EML2	24139	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr19	46129994	46129994	+	Frame_Shift_Del	DEL	C	C	-													0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	cttgccgcttgctcaagctgCccccctccaaggtccagaag					novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	EML2-154	NM_001193268	exon11	c.1313delG	p.G438fs	AAGCTGCCCCCCT	.	130	50	77	0	.	0	0	0	0	0	-	46129994	C	-	46129994	7	5	5	1	0	1	0	1	0	0	0	0	5110	739	26	0	1287	0	EML2	19	46129994	Frame_Shift_Del	DEL	C	TCGA-OR-A5J5-01A-11D-A29I-10	277837	46129994	12998989	558	1002										
DMWD	1762	hgsc.bcm.edu	37	chr19	46289388	46289388	+	Frame_Shift_Del	DEL	G	G	-													0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	gagggtgcgggtgcgggccaGgggggggtgcgggtagagca					novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	DMWD-90	NM_004943	exon3	c.1366delC	p.L456fs	GGGCCAGGGGGGG	.	143	69	15	1	.	0	0	0	0	0	-	46289388	G	-	46289388	7	5	5	1	0	1	0	1	0	0	0	0	4604	991	35	0	670	0	DMWD	19	46289388	Frame_Shift_Del	DEL	G	TCGA-OR-A5J5-01A-11D-A29I-10	159394	46289388	12839595	559	1003										
FKRP	79147	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	47259950	47259950	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	gcgaaagcaaccacttgcacGtggacctgtggcccttctac	10	14	1	0	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	FKRP-91	NM_024301	exon4	c.G1243A	p.V415M	TTGCACGTGGACC	.	123	55	34	0	.	15	4	11	0	0	A	47259950	G	A	47259950	3	1	5	1	0	0	0	0	1	0	0	0	5936	1145	40	1	1245	1	FKRP	19	47259950	Missense_Mutation	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10	970562	47259950	11869033	560	1004										
ZC3H4	23211	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	47571027	47571027	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	tcagctccccaactgaagccGggggtcggctggacgtctgc	14	14	2	1	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	ZC3H4-74	NM_015168	exon15	c.C2498T	p.P833L	GAAGCCGGGGGTC	.	83	42	25	0	.	7	3	4	0	0	A	47571027	G	A	47571027	3	1	5	1	0	0	0	0	1	0	0	0	17607	1116	39	1	1417	1	ZC3H4	19	47571027	Missense_Mutation	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10	311077	47571027	11557956	561	1005										
DHX34	9704	broad.mit.edu;bcgsc.ca	37	chr19	47856391	47856391	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	ggactggaattgtccagagaCgcgtcgcctcttggaagatg	14	9	1	2	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	DHX34-231	NM_014681	exon2	c.C104T	p.T35M	CAGAGACGCGTCG	.	199	6	133	0	.	7	7	0	0	0	T	47856391	C	T	47856391	3	4	5	1	0	0	0	0	1	0	0	0	4518	536	19	1	106	1	DHX34	19	47856391	Missense_Mutation	SNP	C	TCGA-OR-A5J5-01A-11D-A29I-10	285364	47856391	11272592	562	1006										
GLTSCR1	29998	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	48204610	48204610	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	tacgtgtcttcctcccgctcGctcggcctccccatcgcagc	8	20	1	0	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	GLTSCR1-48	NM_015711	exon15	c.G3621A	p.S1207S	CCGCTCGCTCGGC	.	98	36	27	0	.	33	14	19	0	0	A	48204610	G	A	48204610	2	1	5	1	0	0	0	0	0	0	0	1	6494	1074	38	1		1	GLTSCR1	19	48204610	Silent	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10	348219	48204610	10924373	563	1007										
LMTK3	114783	broad.mit.edu;bcgsc.ca	37	chr19	49013775	49013775	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	gaggaggaggaagatgaaggCcagcaggccggagcaggaaa	19	6	0	2	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	LMTK3-1357	NM_001080434	exon3	c.G238A	p.A80T	TGAAGGCCAGCAG	.	238	9	166	0	.	0	0	0	0	0	T	49013775	C	T	49013775	3	4	5	1	0	0	0	0	1	0	0	0	8884	739	26	3	4287	3	LMTK3	19	49013775	Missense_Mutation	SNP	C	TCGA-OR-A5J5-01A-11D-A29I-10	809165	49013775	10115208	564	1008										
RASIP1	54922	hgsc.bcm.edu	37	chr19	49232226	49232226	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	cttgatgagccgggccaggcGgcccagcagtcgtggcaggt	17	12	0	2	rs2287922		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	RASIP1-228	NM_017805	exon5	c.C1801T	p.R601C	CCAGGCGGCCCAG	.	5	5	0	0	G|0.738;A|0.262	6	2	4	0	0	A	49232226	G	A	49232226	3	1	5	1	0	0	0	0	1	0	0	0	13113	1116	39	1	1122	1	RASIP1	19	49232226	Missense_Mutation	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10	218451	49232226	9896757	565	1009										
PPFIA3	8541	broad.mit.edu	37	chr19	49641518	49641518	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	ggcagaggagctggagagtcGggtgtccagctctggcttgg	19	8	1	2	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	PPFIA3-226	NM_003660	exon16	c.G1910A	p.R637Q	AGAGTCGGGTGTC	.	189	5	120	1	.	5	5	0	0	0	A	49641518	G	A	49641518	3	1	5	1	0	0	0	0	1	0	0	0	12340	1116	39	1	1968	1	PPFIA3	19	49641518	Missense_Mutation	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10	409292	49641518	9487465	566	1010										
ZNF473	25888	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	50548675	50548675	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	tcctacaactgtaacgaatgCggcaaggcttttacccggat	9	11	0	0	rs146105171		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	ZNF473-91	NM_015428	exon5	c.C975T	p.C325C	CGAATGCGGCAAG	.	235	113	144	1	C|1.000;T|0.000	5	1	4	0	0	T	50548675	C	T	50548675	2	4	5	1	0	0	0	0	0	0	0	1	17968	776	27	1		1	ZNF473	19	50548675	Silent	SNP	C	TCGA-OR-A5J5-01A-11D-A29I-10	907157	50548675	8580308	567	1011										
ZNF836	162962	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	52658977	52658977	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	tgaattttccgatgacgtgcTaggcatgagtagtaactgaa	11	6	0	4	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	ZNF836-46	NM_001102657	exon5	c.A1959G	p.L653L	ACGTGCTAGGCAT	.	177	18	122	0	.	44	35	9	0	0	C	52658977	T	C	52658977	2	2	5	1	0	0	0	0	0	0	0	1	18224	1509	53	4		4	ZNF836	19	52658977	Silent	SNP	T	TCGA-OR-A5J5-01A-11D-A29I-10	2110302	52658977	6470006	568	1012										
ZNF701	55762	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	53086056	53086056	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	cagtataaatgtgatgtatgCggcaaggactttcatcagaa	10	6	2	2	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	ZNF701-90	NM_001172655	exon5	c.C942T	p.C314C	TGTATGCGGCAAG	.	375	184	293	0	.	1	1	0	0	0	T	53086056	C	T	53086056	2	4	5	1	0	0	0	0	0	0	0	1	18142	776	27	1		1	ZNF701	19	53086056	Silent	SNP	C	TCGA-OR-A5J5-01A-11D-A29I-10	427079	53086056	6042927	569	1013										
ZNF665	79788	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	53668192	53668192	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	ctaaaggctttgccacactcAttacacttgtaaggtttttc	6	10	1	0	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	ZNF665-70	NM_024733	exon4	c.T1551C	p.N517N	ACACTCATTACAC	.	149	85	90	0	.	4	4	0	0	0	G	53668192	A	G	53668192	2	3	5	1	0	0	0	0	0	0	0	1	18110	214	8	4		4	ZNF665	19	53668192	Silent	SNP	A	TCGA-OR-A5J5-01A-11D-A29I-10	582136	53668192	5460791	570	1014										
NLRP12	91662	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	54314363	54314363	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	ctggtgtcccacggtcctcgCgtgtccccggcctgtgtcca	12	17	0	0	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	NLRP12-211	NM_144687	exon3	c.G550A	p.V184M	TCCTCGCGTGTCC	.	234	98	92	1	.	0	0	0	0	0	T	54314363	C	T	54314363	3	4	5	1	0	0	0	0	1	0	0	0	10503	768	27	1	2763	1	NLRP12	19	54314363	Missense_Mutation	SNP	C	TCGA-OR-A5J5-01A-11D-A29I-10	646171	54314363	4814620	571	1015										
CACNG6	59285	broad.mit.edu	37	chr19	54496174	54496175	+	Frame_Shift_Ins	INS	-	-	T													0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	gcaagaggagaaccggcggcINSggggggccgcgggccggcgg					novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	CACNG6-92	NM_031897	exon1	c.43_44insT	p.R15fs	CGGCGGCGGGGGG	.	11	5	5	0	.	0	0	0	0	0	T	54496175	-	T	54496174	7	5	5	1	0	1	1	0	0	0	0	0	2567	759	27	0	45	0	CACNG6	19	54496174	Frame_Shift_Ins	INS	-	TCGA-OR-A5J5-01A-11D-A29I-10	181811	54496174	4632809	572	1016										
LILRB2	10288	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	54782326	54782326	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	gaaggaaagtgtggaactgcCgccatgactgacacagcagg	14	9	0	2	rs202223934		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	LILRB2-91	NM_005874	exon7	c.G1046A	p.R349Q	AACTGCCGCCATG	.	589	282	424	1	C|0.999;T|0.001	0	0	0	0	0	T	54782326	C	T	54782326	3	4	5	1	0	0	0	0	1	0	0	0	8814	652	23	1	782	1	LILRB2	19	54782326	Missense_Mutation	SNP	C	TCGA-OR-A5J5-01A-11D-A29I-10	286152	54782326	4346657	573	1017										
LILRB1	10859	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	55144512	55144512	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	ctcggtgcagccgggccccaCggtggcctcaggagagaacg	16	14	1	1	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	LILRB1-137	NM_001081637	exon7	c.C1004T	p.T335M	GCCCCACGGTGGC	.	356	67	185	0	.	0	0	0	0	0	T	55144512	C	T	55144512	3	4	5	1	0	0	0	0	1	0	0	0	8813	536	19	1	1026	1	LILRB1	19	55144512	Missense_Mutation	SNP	C	TCGA-OR-A5J5-01A-11D-A29I-10	362186	55144512	3984471	574	1018										
SBK2	646643	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	56042650	56042650	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	cgagagccccacacagaactCgtacaggaagccacggaggg	13	13	0	2	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	SBK2-68	NM_001101401	exon3	c.G316A	p.E106K	AGAACTCGTACAG	.	173	43	20	1	.	0	0	0	0	0	T	56042650	C	T	56042650	3	4	5	1	0	0	0	0	1	0	0	0	13896	893	31	1	737	1	SBK2	19	56042650	Missense_Mutation	SNP	C	TCGA-OR-A5J5-01A-11D-A29I-10	898138	56042650	3086333	575	1019										
FIZ1	84922	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	56105009	56105009	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	gggtttctcaccagtgtggaCgacctaggggtgcgggagga	18	8	1	0	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	FIZ1-90	NM_032836	exon3	c.G298A	p.V100I	TGTGGACGACCTA	.	295	133	119	0	.	0	0	0	0	0	T	56105009	C	T	56105009	3	4	5	1	0	0	0	0	1	0	0	0	5919	536	19	1	1196	1	FIZ1	19	56105009	Missense_Mutation	SNP	C	TCGA-OR-A5J5-01A-11D-A29I-10	62359	56105009	3023974	576	1020										
ZFP28	140612	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	57066397	57066397	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	atcctcccttatttgtcatcGcagaagtcatactggagaaa	7	10	2	2	rs139300625		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	ZFP28-91	NM_020828	exon8	c.G2243A	p.R748H	GTCATCGCAGAAG	.	120	26	72	0	G|1.000;A|0.000	6	5	1	0	0	A	57066397	G	A	57066397	3	1	5	1	0	0	0	0	1	0	0	0	17679	1087	38	1	2273	1	ZFP28	19	57066397	Missense_Mutation	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10	961388	57066397	2062586	577	1021										
ZNF805	390980	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	57765484	57765484	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	catatgtgtgtagtgaatgcGgaaaggccttcacccactgc	11	10	1	1	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	.	NM_001023563	exon4	c.G1297A	p.G433R	GAATGCGGAAAGG	.	125	52	81	0	.	2	2	0	0	0	A	57765484	G	A	57765484	3	1	5	1	0	0	0	0	1	0	0	0	18209	1117	39	1	1311	1	ZNF805	19	57765484	Missense_Mutation	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10	699087	57765484	1363499	578	1022										
ZNF419	79744	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	58004983	58004983	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	tgaatgtggaaaattctataGccacaagtccaaccttatca	6	9	2	1	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	ZNF419-90	NM_001098491	exon5	c.G1061A	p.S354N	TCTATAGCCACAA	.	150	26	113	0	.	10	8	2	0	0	A	58004983	G	A	58004983	3	1	5	1	0	0	0	0	1	0	0	0	17933	971	34	3	1079	3	ZNF419	19	58004983	Missense_Mutation	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10	239499	58004983	1124000	579	1023										
ZNF135	7694	broad.mit.edu	37	chr19	58578302	58578302	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	gcagtgccggtggccttcacGcctgtgaagacgcctgttct	13	13	2	2	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	ZNF135-91	NM_007134	exon4	c.G522A	p.T174T	CTTCACGCCTGTG	.	208	6	154	0	.	6	6	0	0	0	A	58578302	G	A	58578302	2	1	5	1	0	0	0	0	0	0	0	1	17762	1074	38	1		1	ZNF135	19	58578302	Silent	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10	573319	58578302	550681	580	1024										
ZSCAN18	65982	broad.mit.edu	37	chr19	58600183	58600183	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	taagaattgaggatgagcccGcaggggagcccagcagcatc	14	10	0	3	rs73058515	alternate_allele	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	ZSCAN18-90	NM_001145542	exon3	c.C593T	p.A198V	GAGCCCGCAGGGG	.	89	45	43	2	G|1.000;T|0.000	6	3	3	0	0	A	58600183	G	A	58600183	3	1	5	1	0	0	0	0	1	0	0	0	18267	1087	38	1	1127	1	ZSCAN18	19	58600183	Missense_Mutation	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10	21881	58600183	528800	581	1025										
PDYN	5173	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr20	1961122	1961122	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	aagaagcccccatagcgtttGtacaggtcctcatggcccat	9	13	1	1	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	PDYN-92	NM_001190898	exon4	c.C612A	p.Y204X	GCGTTTGTACAGG	.	88	83	154	0	.	0	0	0	0	0	T	1961122	G	T	1961122	4	4	5	1	0	0	0	0	0	1	0	0	11728	1372	48	3	156	3	PDYN	20	1961122	Nonsense_Mutation	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10		1961122	61064398	582	1026										
FASTKD5	60493	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr20	3127458	3127458	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	aatactttctcatgaagaaaCgccaacttttctaagcgagt	6	9	2	2	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	FASTKD5-90	NM_021826	exon2	c.G2259A	p.A753A	AAGAAACGCCAAC	.	133	119	168	2	.	25	0	25	0	0	T	3127458	C	T	3127458	2	4	5	1	0	0	0	0	0	0	0	1	5707	523	19	1		1	FASTKD5	20	3127458	Silent	SNP	C	TCGA-OR-A5J5-01A-11D-A29I-10	1166336	3127458	59898062	583	1027										
C20orf27	54976	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr20	3734755	3734755	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	tgagtcgtattccagctcggCgcccacacacttgacaccat	8	15	0	2	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	C20orf27-90	NM_001039140	exon6	c.G550A	p.A184T	GCTCGGCGCCCAC	.	211	55	44	0	.	23	19	4	0	0	T	3734755	C	T	3734755	3	4	5	1	0	0	0	0	1	0	0	0	2113	768	27	1	53	1	C20orf27	20	3734755	Missense_Mutation	SNP	C	TCGA-OR-A5J5-01A-11D-A29I-10	607297	3734755	59290765	584	1028										
ESF1	51575	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr20	13695562	13695563	+	Frame_Shift_Del	DEL	TT	TT	-													0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	tcttgcttgaaactgctctgTtttggtttttatagatttaa					novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	TT	TT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	ESF1-91	NM_001276380	exon14	c.2514_2515del	p.838_839del	GCTCTGTTTTGGT	.	46	40	75	0	.	0	0	0	0	0	-	13695563	TT	-	13695562	7	5	5	1	0	1	0	1	0	0	0	0	5264	1725	60	0	44	0	ESF1	20	13695562	Frame_Shift_Del	DEL	TT	TCGA-OR-A5J5-01A-11D-A29I-10	9960807	13695562	49329958	585	1029										
CST2	1470	bcgsc.ca	37	chr20	23805918	23805918	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	ggacttggtacatatggttcGgcccacctctatgtcgaaga	11	10	1	1	rs6049157	byfrequency	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	CST2-90	NM_001322	exon2	c.C271T	p.R91X	TGGTTCGGCCCAC	.	332	9	372	1	G|0.988;A|0.012	0	0	0	0	0	A	23805918	G	A	23805918	4	1	5	1	0	0	0	0	0	1	0	0	3978	1124	39	1	162	1	CST2	20	23805918	Nonsense_Mutation	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10	10110356	23805918	39219602	586	1030										
PLAGL2	5326	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr20	30785207	30785207	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	tggcaccgcctgctacccggCgtgagtgggccttcaggtgc	15	14	1	1	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	PLAGL2-651	NM_002657	exon3	c.G539A	p.R180H	ACCCGGCGTGAGT	.	95	14	71	0	.	0	0	0	0	0	T	30785207	C	T	30785207	3	4	5	1	0	0	0	0	1	0	0	0	12049	768	27	1	955	1	PLAGL2	20	30785207	Missense_Mutation	SNP	C	TCGA-OR-A5J5-01A-11D-A29I-10	6979289	30785207	32240313	587	1031										
EPB41L1	2036	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr20	34778675	34778675	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	gcctgcacccttctttgagcGttcttccagcaaacggtaca	8	14	2	1	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	EPB41L1-93	NM_001258329	exon12	c.G1256A	p.R419H	TTGAGCGTTCTTC	.	56	47	59	0	.	24	1	23	0	0	A	34778675	G	A	34778675	3	1	5	1	0	0	0	0	1	0	0	0	5165	1145	40	1	1294	1	EPB41L1	20	34778675	Missense_Mutation	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10	3993468	34778675	28246845	588	1032										
PLCG1	5335	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr20	39793679	39793679	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	acacactcctcaccaagcccGtggagatctctgccgacggg	10	16	2	1	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	PLCG1-911	NM_182811	exon13	c.G1324A	p.V442M	AAGCCCGTGGAGA	.	124	57	169	0	.	14	5	9	0	0	A	39793679	G	A	39793679	3	1	5	1	0	0	0	0	1	0	0	0	12064	1145	40	1	1374	1	PLCG1	20	39793679	Missense_Mutation	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10	5015004	39793679	23231841	589	1033										
CHD6	84181	broad.mit.edu	37	chr20	40074318	40074318	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	tacacaccatgcttgaacacGccaatgagaagtgacttatc	7	11	0	3	rs139410145	byfrequency	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	CHD6-238	NM_032221	exon25	c.C3864T	p.G1288G	GAACACGCCAATG	.	126	5	139	0	G|1.000;A|0.000	2	2	0	0	0	A	40074318	G	A	40074318	2	1	5	1	0	0	0	0	0	0	0	1	3335	1074	38	1		1	CHD6	20	40074318	Silent	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10	280639	40074318	22951202	590	1034										
MYBL2	4605	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr20	42328526	42328526	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	gtacagatctggacgcagtgCgaacaccagagcccttggag	13	11	1	2	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	MYBL2-415	NM_002466	exon7	c.C793T	p.R265X	GCAGTGCGAACAC	.	141	135	191	2	.	0	0	0	0	0	T	42328526	C	T	42328526	4	4	5	1	0	0	0	0	0	1	0	0	10038	760	27	1	819	1	MYBL2	20	42328526	Nonsense_Mutation	SNP	C	TCGA-OR-A5J5-01A-11D-A29I-10	2254208	42328526	20696994	591	1035										
CTSA	5476	broad.mit.edu	37	chr20	44526395	44526395	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	ataatggagatgtagacatgGcctgcaatttcatgggggat	13	5	1	2	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	CTSA-91	NM_000308	exon13	c.G1258A	p.A420T	GACATGGCCTGCA	.	122	5	154	0	.	431	417	14	0	0	A	44526395	G	A	44526395	3	1	5	1	0	0	0	0	1	0	0	0	4035	1203	42	3	1308	3	CTSA	20	44526395	Missense_Mutation	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10	2197869	44526395	18499125	592	1036										
DIDO1	11083	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr20	61522425	61522425	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	ctacaacaccaaagcggccaCggctgctgaaataggagtag	11	11	0	1	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	DIDO1-96	NM_080797	exon15	c.G3428A	p.R1143H	CGGCCACGGCTGC	.	167	9	186	0	.	2	2	0	0	0	T	61522425	C	T	61522425	3	4	5	1	0	0	0	0	1	0	0	0	4533	536	19	1	3331	1	DIDO1	20	61522425	Missense_Mutation	SNP	C	TCGA-OR-A5J5-01A-11D-A29I-10	16996030	61522425	1503095	593	1037										
ITSN1	6453	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr21	35208767	35208767	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	tgccaggtgattgggatgtaCgactacaccgcgcagaatga	13	9	0	3	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	ITSN1-94	NM_001001132	exon29	c.C3492T	p.Y1164Y	GATGTACGACTAC	.	170	76	216	1	.	5	3	2	0	0	T	35208767	C	T	35208767	2	4	5	1	0	0	0	0	0	0	0	1	7947	547	19	1		1	ITSN1	21	35208767	Silent	SNP	C	TCGA-OR-A5J5-01A-11D-A29I-10		35208767	12921128	594	1038										
SIM2	6493	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr21	38098480	38098480	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	tgctggacatgtccctgtacGactcctgctaccagattgtg	10	12	0	1	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	SIM2-90	NM_005069	exon6	c.G604A	p.D202N	CTGTACGACTCCT	.	117	9	112	0	.	0	0	0	0	0	A	38098480	G	A	38098480	3	1	5	1	0	0	0	0	1	0	0	0	14359	1058	37	1	626	1	SIM2	21	38098480	Missense_Mutation	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10	2889713	38098480	10031415	595	1039										
DSCR6	53820	ucsc.edu;bcgsc.ca;mdanderson.org	37	chr21	38390297	38390297	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	gagtctactgagtctgcttcCgaagctgaagagccagagga	13	9	2	4	rs138756839	byfrequency	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	DSCR6-153	NM_018962	exon4	c.C363T	p.S121S	TGCTTCCGAAGCT	.	43	36	55	0	C|0.999;T|0.001	0	0	0	0	0	T	38390297	C	T	38390297	2	4	5	1	0	0	0	0	0	0	0	1	4784	639	23	1		1	DSCR6	21	38390297	Silent	SNP	C	TCGA-OR-A5J5-01A-11D-A29I-10	291817	38390297	9739598	596	1040										
BRWD1	54014	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr21	40667746	40667746	+	Frame_Shift_Del	DEL	T	T	-													0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	tccgagaatccttctgtgcaTttttatatgctgatacatag					novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	BRWD1-94	NM_018963	exon7	c.532delA	p.M178fs	TGTGCATTTTTAT	.	93	83	104	0	.	0	0	0	0	0	-	40667746	T	-	40667746	7	5	5	1	0	1	0	1	0	0	0	0	1528	1493	52	0	6813	0	BRWD1	21	40667746	Frame_Shift_Del	DEL	T	TCGA-OR-A5J5-01A-11D-A29I-10	2277449	40667746	7462149	597	1041										
B3GALT5	10317	ucsc.edu;bcgsc.ca	37	chr21	41033159	41033159	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	gctacgtgttttctggcgacGtggcgagtcaggtgtacaat	14	8	2	0	rs144752439		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	B3GALT5-91	NM_033170	exon3	c.G673A	p.V225M	GGCGACGTGGCGA	.	67	59	74	2	G|1.000;A|0.000	0	0	0	0	0	A	41033159	G	A	41033159	3	1	5	1	0	0	0	0	1	0	0	0	1251	1145	40	1	675	1	B3GALT5	21	41033159	Missense_Mutation	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10	365413	41033159	7096736	598	1042										
PFKL	5211	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr21	45736189	45736189	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	gagggtgccattgaccgcaaCgggaagcccatctcgtccag	13	13	1	1	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	PFKL-251	NM_002626	exon8	c.C810T	p.N270N	CCGCAACGGGAAG	.	189	65	97	0	.	12	9	3	0	0	T	45736189	C	T	45736189	2	4	5	1	0	0	0	0	0	0	0	1	11793	535	19	1		1	PFKL	21	45736189	Silent	SNP	C	TCGA-OR-A5J5-01A-11D-A29I-10	4703030	45736189	2393706	599	1043										
PFKL	5211	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr21	45744758	45744758	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	ggtcaacgtggagcacatgaCggagaagatgaagacagaca	14	7	1	6	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	PFKL-251	NM_002626	exon18	c.C1835T	p.T612M	ACATGACGGAGAA	.	143	83	76	0	.	46	30	16	0	0	T	45744758	C	T	45744758	3	4	5	1	0	0	0	0	1	0	0	0	11793	536	19	1	1905	1	PFKL	21	45744758	Missense_Mutation	SNP	C	TCGA-OR-A5J5-01A-11D-A29I-10	8569	45744758	2385137	600	1044										
COL18A1	80781	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr21	46900432	46900432	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	ggggcgatctggaggccctgCgggtgagtggcccttaaact	17	10	1	1	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	COL18A1-90	NM_030582	exon11	c.C1990T	p.R664W	GCCCTGCGGGTGA	.	50	5	70	0	.	0	0	0	0	0	T	46900432	C	T	46900432	3	4	5	1	0	0	0	0	1	0	0	0	3681	759	27	1	2851	1	COL18A1	21	46900432	Missense_Mutation	SNP	C	TCGA-OR-A5J5-01A-11D-A29I-10	1155674	46900432	1229463	601	1045										
PRMT2	3275	broad.mit.edu;bcgsc.ca	37	chr21	48068519	48068519	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	ctcttctgtgcacactatgcGcggcctagagcggtgagtgg	14	11	2	2	rs150978784		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	PRMT2-91	NM_001242864	exon5	c.G477A	p.A159A	CTATGCGCGGCCT	.	90	5	112	0	G|0.999;A|0.001	18	16	2	0	0	A	48068519	G	A	48068519	2	1	5	1	0	0	0	0	0	0	0	1	12569	1074	38	1		1	PRMT2	21	48068519	Silent	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10	1168087	48068519	61376	602	1046										
CECR5	27440	hgsc.bcm.edu	37	chr22	17640022	17640022	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	ccggacgtcctcacctgagcGgggcccacagcatagcacct	11	17	1	1	rs11550530		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	CECR5-514	NM_033070	exon1	c.C120G	p.P40P	CTGAGCGGGGCCC	.	5	5	0	0	.	0	0	0	0	0	C	17640022	G	C	17640022	2	2	5	1	0	0	0	0	0	0	0	1	3213	1103	39	2		2	CECR5	22	17640022	Silent	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10		17640022	33664544	603	1047										
PRODH	5625	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr22	18900804	18900804	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	gctgttctccagggcacggcGggacaagtagggcagcacct	15	12	1	0	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	PRODH-289	NM_016335	exon15	c.C1687T	p.R563C	CACGGCGGGACAA	.	187	10	81	0	.	1	1	0	0	0	A	18900804	G	A	18900804	3	1	5	1	0	0	0	0	1	0	0	0	12580	1116	39	1	119	1	PRODH	22	18900804	Missense_Mutation	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10	1260782	18900804	32403762	604	1048										
MN1	4330	hgsc.bcm.edu	37	chr22	28194988	28194988	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	gggactggtggtccggggccGgatgctgcaggggcggcccc	21	12	0	0	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	MN1-993	NM_002430	exon1	c.C1544T	p.P515L	GGGGCCGGATGCT	.	103	6	4	0	.	0	0	0	0	0	A	28194988	G	A	28194988	3	1	5	1	0	0	0	0	1	0	0	0	9701	1116	39	1	2426	1	MN1	22	28194988	Missense_Mutation	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10	9294184	28194988	23109578	605	1049										
ZNRF3	84133	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr22	29444383	29444383	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	ctctccctgcccaggagctgCgggtcatcccctgtactcac	9	18	3	0	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	ZNRF3-69	NM_001206998	exon7	c.C919T	p.R307W	GAGCTGCGGGTCA	.	161	145	169	1	.	0	0	0	0	0	T	29444383	C	T	29444383	3	4	5	1	0	0	0	0	1	0	0	0	18250	759	27	1	641	1	ZNRF3	22	29444383	Missense_Mutation	SNP	C	TCGA-OR-A5J5-01A-11D-A29I-10	1249395	29444383	21860183	606	1050										
SLC35E4	339665	hgsc.bcm.edu	37	chr22	31032952	31032952	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	cgccatgggtccgctctgccTgggggccgcctgcagcctgg	16	16	1	0	rs150781327	byfrequency	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	SLC35E4-90	NM_001001479	exon1	c.T515G	p.L172R	TCTGCCTGGGGGC	.	20	17	0	0	T|0.995;G|0.005	4	0	4	0	0	G	31032952	T	G	31032952	3	3	5	1	0	0	0	0	1	0	0	0	14622	1580	55	5	517	5	SLC35E4	22	31032952	Missense_Mutation	SNP	T	TCGA-OR-A5J5-01A-11D-A29I-10	1588569	31032952	20271614	607	1051										
TMPRSS6	164656	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr22	37466579	37466579	+	Frame_Shift_Del	DEL	C	C	-													0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	ccagcggtcagcgatgagggCccccccacagatgtgtcgac					novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	TMPRSS6-292	NM_153609	exon15	c.1813delG	p.A605fs	TGAGGGCCCCCCC	.	135	112	92	0	.	0	0	0	0	0	-	37466579	C	-	37466579	7	5	5	1	0	1	0	1	0	0	0	0	16288	739	26	0	638	0	TMPRSS6	22	37466579	Frame_Shift_Del	DEL	C	TCGA-OR-A5J5-01A-11D-A29I-10	6433627	37466579	13837987	608	1052										
CACNA1I	8911	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr22	39966861	39966861	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	ccggagccccccatcctcccCgccaggcctggaggagcctc	11	21	0	0	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	CACNA1I-135	NM_001003406	exon1	c.C104T	p.P35L	CCTCCCCGCCAGG	.	74	7	33	0	.	1	1	0	0	0	T	39966861	C	T	39966861	3	4	5	1	0	0	0	0	1	0	0	0	2552	652	23	1	106	1	CACNA1I	22	39966861	Missense_Mutation	SNP	C	TCGA-OR-A5J5-01A-11D-A29I-10	2500282	39966861	11337705	609	1053										
TNRC6B	23112	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr22	40661638	40661638	+	Frame_Shift_Del	DEL	A	A	-													0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	gttcagaaatcaactgggtcAaaaaatgactcttgggacaa					novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	TNRC6B-22	NM_001162501	exon5	c.1404delA	p.S468fs	TGGGTCAAAAAAT	.	55	45	67	0	.	0	0	0	0	0	-	40661638	A	-	40661638	7	5	5	1	0	1	0	1	0	0	0	0	16378	117	5	0	1543	0	TNRC6B	22	40661638	Frame_Shift_Del	DEL	A	TCGA-OR-A5J5-01A-11D-A29I-10	694777	40661638	10642928	610	1054										
FBLN1	2192	bcgsc.ca	37	chr22	45959041	45959041	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	gccctcaccaagcctgtcccCgagcccagggacttgctcct	9	19	1	0	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	FBLN1-515	NM_001996	exon15	c.C1947T	p.P649P	TGTCCCCGAGCCC	.	162	6	186	0	.	14	13	1	0	0	T	45959041	C	T	45959041	2	4	5	1	0	0	0	0	0	0	0	1	5717	639	23	1		1	FBLN1	22	45959041	Silent	SNP	C	TCGA-OR-A5J5-01A-11D-A29I-10	5297403	45959041	5345525	611	1055										
ASMTL	8623	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chrX	1522202	1522202	+	Frame_Shift_Del	DEL	C	C	-													0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	ccaagatggcatccaggacaCcccccaagtgcaccacctgc					novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	ASMTL-62	NM_004192	exon13	c.1826delG	p.G609fs	AGGACACCCCCCA	.	292	125	176	0	.	0	0	0	0	0	-	1522202	C	-	1522202	7	5	5	1	0	1	0	1	0	0	0	0	1047	507	18	0	43	0	ASMTL	23	1522202	Frame_Shift_Del	DEL	C	TCGA-OR-A5J5-01A-11D-A29I-10		1522202	153748358	612	1056										
DHRSX	207063	bcgsc.ca	37	chrX	2184933	2184933	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	tgccctaggtagttcaggccGaaatgttcttcgaatccatc	9	11	2	0	rs200644172		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	.	NM_145177	exon5	c.C444T	p.F148F	CAGGCCGAAATGT	.	1480	658	993	5	G|0.999;A|0.001	34	20	14	0	0	A	2184933	G	A	2184933	2	1	5	1	0	0	0	0	0	0	0	1	4510	1049	37	1		1	DHRSX	23	2184933	Silent	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10	662731	2184933	153085627	613	1057										
ARSD	414	broad.mit.edu	37	chrX	2825437	2825437	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	gggcacaggactcagggtctGccgatgctccgacaccgcgg	15	14	2	0	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	ARSD-130	NM_001669	exon10	c.C1657T	p.Q553X	GGGTCTGCCGATG	.	224	9	119	1	.	1	1	0	0	0	A	2825437	G	A	2825437	4	1	5	1	0	0	0	0	0	1	0	0	990	1328	46	3	128	3	ARSD	23	2825437	Nonsense_Mutation	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10	640504	2825437	152445123	614	1058										
TBL1X	6907	ucsc.edu;bcgsc.ca	37	chrX	9673126	9673126	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	gtgcaggctcggctgtgaccGcccagtcaaaaccttccagg	12	14	1	1	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	TBL1X-131	NM_001139466	exon13	c.G1208A	p.R403H	GTGACCGCCCAGT	.	426	388	306	4	.	2	0	2	0	0	A	9673126	G	A	9673126	3	1	5	1	0	0	0	0	1	0	0	0	15676	1087	38	1	1246	1	TBL1X	23	9673126	Missense_Mutation	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10	6847689	9673126	145597434	615	1059										
USP9X	8239	hgsc.bcm.edu;broad.mit.edu	37	chrX	40982957	40982957	+	Frame_Shift_Del	DEL	C	C	-													0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	ctcctgatggacagtctcagCcccccctccaacagaatcag					novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	USP9X-563	NM_001039591	exon2	c.76delC	p.P26fs	TCTCAGCCCCCCC	.	242	13	184	0	.	0	0	0	0	0	-	40982957	C	-	40982957	7	5	5	1	0	1	0	1	0	0	0	0	17128	739	26	0	78	0	USP9X	23	40982957	Frame_Shift_Del	DEL	C	TCGA-OR-A5J5-01A-11D-A29I-10	31309831	40982957	114287603	616	1060										
CCDC120	90060	hgsc.bcm.edu	37	chrX	48921959	48921959	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	gcaacagcagatcgcggcggCcgcccgccgcctggccttgg	15	17	0	1	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	CCDC120-131	NM_001163321	exon6	c.C488T	p.A163V	CGGCGGCCGCCCG	.	21	18	2	0	.	0	0	0	0	0	T	48921959	C	T	48921959	3	4	5	1	0	0	0	0	1	0	0	0	2762	739	26	3	397	3	CCDC120	23	48921959	Missense_Mutation	SNP	C	TCGA-OR-A5J5-01A-11D-A29I-10	7939002	48921959	106348601	617	1061										
CCDC120	90060	hgsc.bcm.edu	37	chrX	48925015	48925015	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	cccccagaccctccccgggcCgcccggcctagctcagctgc	10	23	1	1	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	CCDC120-131	NM_001163321	exon10	c.C1365T	p.A455A	CCGGGCCGCCCGG	.	21	21	0	0	.	3	0	3	0	0	T	48925015	C	T	48925015	2	4	5	1	0	0	0	0	0	0	0	1	2762	639	23	1		1	CCDC120	23	48925015	Silent	SNP	C	TCGA-OR-A5J5-01A-11D-A29I-10	3056	48925015	106345545	618	1062										
AKAP4	8852	bcgsc.ca	37	chrX	49955729	49955729	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	cctcctacactgtaccccttCtctgctgctttagctgaaac	5	16	1	1	rs78668179	byfrequency	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	AKAP4-540	NM_003886	exon6	c.G2439A	p.E813E	CCCCTTCTCTGCT	.	117	6	81	0	C|0.961;T|0.039	0	0	0	0	0	T	49955729	C	T	49955729	2	4	5	1	0	0	0	0	0	0	0	1	453	912	32	3		3	AKAP4	23	49955729	Silent	SNP	C	TCGA-OR-A5J5-01A-11D-A29I-10	1030714	49955729	105314831	619	1063										
UBQLN2	29978	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chrX	56591874	56591874	+	Frame_Shift_Del	DEL	C	C	-													0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	aggacccactggccctgcagCcccccctggctccaccggct					novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	UBQLN2-131	NM_013444	exon1	c.1568delC	p.A523fs	CTGCAGCCCCCCC	.	57	48	21	0	.	0	0	0	0	0	-	56591874	C	-	56591874	7	5	5	1	0	1	0	1	0	0	0	0	16935	739	26	0	1570	0	UBQLN2	23	56591874	Frame_Shift_Del	DEL	C	TCGA-OR-A5J5-01A-11D-A29I-10	6636145	56591874	98678686	620	1064										
STARD8	9754	broad.mit.edu	37	chrX	67941902	67941902	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	catctaggatcaagagcaaaCgcagcctcattggcaggcca	10	12	3	1	rs61735034	byfrequency	TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	STARD8-196	NM_001142503	exon11	c.C2473T	p.R825C	AGCAAACGCAGCC	.	169	7	87	2	C|0.998;T|0.002	0	0	0	0	0	T	67941902	C	T	67941902	3	4	5	1	0	0	0	0	1	0	0	0	15300	536	19	1	2515	1	STARD8	23	67941902	Missense_Mutation	SNP	C	TCGA-OR-A5J5-01A-11D-A29I-10	11350028	67941902	87328658	621	1065										
TEX11	56159	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	69902635	69902635	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	attttccgatgacttaaaacGttcatgaataatcgtcagga	7	7	2	2	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	TEX11-178	NM_001003811	exon15	c.C1090T	p.R364C	TAAAACGTTCATG	.	111	46	88	0	.	0	0	0	0	0	A	69902635	G	A	69902635	3	1	5	1	0	0	0	0	1	0	0	0	15811	1145	40	1	1800	1	TEX11	23	69902635	Missense_Mutation	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10	1960733	69902635	85367925	622	1066										
SLC7A3	84889	broad.mit.edu;bcgsc.ca	37	chrX	70148709	70148709	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	ctcaccagtgagcagcaacaCgaggcccaaagcaaagaaat	9	12	1	2	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	SLC7A3-132	NM_032803	exon3	c.G514A	p.V172M	GCAACACGAGGCC	.	131	6	74	0	.	0	0	0	0	0	T	70148709	C	T	70148709	3	4	5	1	0	0	0	0	1	0	0	0	14733	536	19	1	1385	1	SLC7A3	23	70148709	Missense_Mutation	SNP	C	TCGA-OR-A5J5-01A-11D-A29I-10	246074	70148709	85121851	623	1067										
KIAA2022	340533	broad.mit.edu;bcgsc.ca	37	chrX	73960665	73960665	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	gttggtttggcttcccccacGgccaatgccaatttgcattt	9	12	0	0	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	KIAA2022-183	NM_001008537	exon3	c.C3727T	p.R1243C	CCCCACGGCCAAT	.	239	11	176	0	.	0	0	0	0	0	A	73960665	G	A	73960665	3	1	5	1	0	0	0	0	1	0	0	0	8290	1116	39	1	831	1	KIAA2022	23	73960665	Missense_Mutation	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10	3811956	73960665	81309895	624	1068										
KIAA2022	340533	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chrX	73961524	73961524	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	gagtcatcagatgggagttgGgtatcttgcatggagtcata	14	5	4	1	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	KIAA2022-183	NM_001008537	exon3	c.C2868T	p.T956T	GAGTTGGGTATCT	.	137	13	92	0	.	0	0	0	0	0	A	73961524	G	A	73961524	2	1	5	1	0	0	0	0	0	0	0	1	8290	1219	43	3		3	KIAA2022	23	73961524	Silent	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10	859	73961524	81309036	625	1069										
PRPS1	5631	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	106890920	106890920	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	gctatttctcgcatcaacaaCgcatgctttgaggcagtagt	9	10	2	1	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	PRPS1-289	NM_002764	exon6	c.C789T	p.N263N	CAACAACGCATGC	.	216	103	167	0	.	30	14	16	0	0	T	106890920	C	T	106890920	2	4	5	1	0	0	0	0	0	0	0	1	12610	535	19	1		1	PRPS1	23	106890920	Silent	SNP	C	TCGA-OR-A5J5-01A-11D-A29I-10	32929396	106890920	48379640	626	1070										
CAPN6	827	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chrX	110496401	110496402	+	Frame_Shift_Ins	INS	-	-	T													0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	tatcccagcgtatttttctgINSttttttgagggtcccattcc					novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	CAPN6-195	NM_014289	exon4	c.341_342insA	p.T114fs	TTTTCTGTTTTTT	.	54	49	63	0	.	0	0	0	0	0	T	110496402	-	T	110496401	7	5	5	1	0	1	1	0	0	0	0	0	2636	1377	48	0	1624	0	CAPN6	23	110496401	Frame_Shift_Ins	INS	-	TCGA-OR-A5J5-01A-11D-A29I-10	3605481	110496401	44774159	627	1071										
HTR2C	3358	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	114141204	114141204	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	agggacgaagaaaaggtgttCgtgaacaacacgacgtgcgt	14	7	0	2	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	HTR2C-133	NM_001256761	exon6	c.C508T	p.R170C	GGTGTTCGTGAAC	.	251	90	186	0	.	0	0	0	0	0	T	114141204	C	T	114141204	3	4	5	1	0	0	0	0	1	0	0	0	7464	883	31	1	617	1	HTR2C	23	114141204	Missense_Mutation	SNP	C	TCGA-OR-A5J5-01A-11D-A29I-10	3644803	114141204	41129356	628	1072										
AGTR2	186	hgsc.bcm.edu;bcgsc.ca	37	chrX	115303928	115303928	+	Frame_Shift_Del	DEL	T	T	-													0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	cctgaacatgtttgcaagcaTtttttttatcacctgcatga					novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	AGTR2-565	NM_000686	exon3	c.395delT	p.I132fs	CAAGCATTTTTTT	.	72	59	52	0	.	0	0	0	0	0	-	115303928	T	-	115303928	7	5	5	1	0	1	0	1	0	0	0	0	402	1493	52	0	397	0	AGTR2	23	115303928	Frame_Shift_Del	DEL	T	TCGA-OR-A5J5-01A-11D-A29I-10	1162724	115303928	39966632	629	1073										
NKAP	79576	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chrX	119059239	119059239	+	Frame_Shift_Del	DEL	G	G	-													0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	catttctcgaaaactggccaGaatcttgttctctctctttc					novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	NKAP-132	NM_024528	exon9	c.1192delC	p.L398fs	TGGCCAGAATCTT	.	87	82	60	0	.	0	0	0	0	0	-	119059239	G	-	119059239	7	5	5	1	0	1	0	1	0	0	0	0	10468	933	33	0	59	0	NKAP	23	119059239	Frame_Shift_Del	DEL	G	TCGA-OR-A5J5-01A-11D-A29I-10	3755311	119059239	36211321	630	1074										
ATP1B4	23439	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	119512613	119512613	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	ctccgctactacccttactaCggcaaactgactcacgtaag	6	15	1	1	rs148650396		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	ATP1B4-131	NM_001142447	exon7	c.C897T	p.Y299Y	TTACTACGGCAAA	.	95	11	59	0	C|1.000;T|0.000	0	0	0	0	0	T	119512613	C	T	119512613	2	4	5	1	0	0	0	0	0	0	0	1	1136	547	19	1		1	ATP1B4	23	119512613	Silent	SNP	C	TCGA-OR-A5J5-01A-11D-A29I-10	453374	119512613	35757947	631	1075										
BCORL1	63035	hgsc.bcm.edu;bcgsc.ca	37	chrX	129149050	129149050	+	Frame_Shift_Del	DEL	A	A	-													0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	gcactggtgccacgtgtggcAaaaagggcagccaggctggt					novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	BCORL1-294	NM_021946	exon3	c.2302delA	p.K768fs	TGTGGCAAAAAGG	.	149	133	105	1	.	0	0	0	0	0	-	129149050	A	-	129149050	7	5	5	1	0	1	0	1	0	0	0	0	1388	131	5	0	2312	0	BCORL1	23	129149050	Frame_Shift_Del	DEL	A	TCGA-OR-A5J5-01A-11D-A29I-10	9636437	129149050	26121510	632	1076										
MAP7D3	79649	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	135323411	135323411	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	gtctcctccgttccaaagtaCgataaagaatggctgtaaat	8	9	1	1	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	MAP7D3-110	NM_024597	exon5	c.G443A	p.R148H	AAAGTACGATAAA	.	105	41	72	0	.	0	0	0	0	0	T	135323411	C	T	135323411	3	4	5	1	0	0	0	0	1	0	0	0	9297	536	19	1	2243	1	MAP7D3	23	135323411	Missense_Mutation	SNP	C	TCGA-OR-A5J5-01A-11D-A29I-10	6174361	135323411	19947149	633	1077										
MAGEA12	4111	broad.mit.edu;bcgsc.ca	37	chrX	151900357	151900357	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	gaggctttgctgaagatcacAggaaagaagtcctggaaatt	12	6	1	3	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	MAGEA12-131	NM_005367	exon2	c.T444C	p.P148P	GATCACAGGAAAG	.	512	14	353	0	.	0	0	0	0	0	G	151900357	A	G	151900357	2	3	5	1	0	0	0	0	0	0	0	1	9194	175	7	4		4	MAGEA12	23	151900357	Silent	SNP	A	TCGA-OR-A5J5-01A-11D-A29I-10	16576946	151900357	3370203	634	1078										
MAGEA12	4111	broad.mit.edu;bcgsc.ca	37	chrX	151900373	151900373	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	tcacaggaaagaagtcctggAaatttctgatgacactcccc	8	11	2	3	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	MAGEA12-131	NM_005367	exon2	c.T428G	p.F143C	TCCTGGAAATTTC	.	481	17	351	0	.	0	0	0	0	0	C	151900373	A	C	151900373	3	2	5	1	0	0	0	0	1	0	0	0	9194	246	9	5	520	5	MAGEA12	23	151900373	Missense_Mutation	SNP	A	TCGA-OR-A5J5-01A-11D-A29I-10	16	151900373	3370187	635	1079										
ATP2B3	492	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	152807870	152807870	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	cgggcgagtctgaccacgtgCgcaagtcagctgacaaagat	13	11	2	3	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	ATP2B3-109	NM_001001344	exon4	c.C754T	p.R252C	CACGTGCGCAAGT	.	208	84	38	0	.	11	7	4	0	0	T	152807870	C	T	152807870	3	4	5	1	0	0	0	0	1	0	0	0	1142	768	27	1	768	1	ATP2B3	23	152807870	Missense_Mutation	SNP	C	TCGA-OR-A5J5-01A-11D-A29I-10	907497	152807870	2462690	636	1080										
PLXNB3	5365	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	chrX	153042767	153042767	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	aggtgcggtgcagcagcctgCgggagcgcgagccagcaagg	19	11	0	0	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	PLXNB3-130	NM_001163257	exon31	c.C5101T	p.R1701W	AGCCTGCGGGAGC	.	198	85	15	0	.	97	54	43	0	0	T	153042767	C	T	153042767	3	4	5	1	0	0	0	0	1	0	0	0	12154	759	27	1	5264	1	PLXNB3	23	153042767	Missense_Mutation	SNP	C	TCGA-OR-A5J5-01A-11D-A29I-10	234897	153042767	2227793	637	1081										
PDZD4	57595	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	153073942	153073942	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	gtgacaggagctgtccccccGgaggcgggggctgcgtctca	17	13	1	1	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	PDZD4-193	NM_032512	exon2	c.C169T	p.R57W	CCCCCCGGAGGCG	.	218	112	53	0	.	6	4	2	0	0	A	153073942	G	A	153073942	3	1	5	1	0	0	0	0	1	0	0	0	11732	1115	39	1	2168	1	PDZD4	23	153073942	Missense_Mutation	SNP	G	TCGA-OR-A5J5-01A-11D-A29I-10	31175	153073942	2196618	638	1082										
MECP2	4204	broad.mit.edu	37	chrX	153295915	153295916	+	Frame_Shift_Ins	INS	-	-	C													0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	aatgtctttgcgctctccctINScccctcggtgtttgtacttt					novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	MECP2-226	NM_001110792	exon3	c.1400_1401insG	p.E467fs	TCTCCCTCCCCTC	.	152	11	76	0	.	0	0	0	0	0	C	153295916	-	C	153295915	7	5	5	1	0	1	1	0	0	0	0	0	9451	1551	54	0	100	0	MECP2	23	153295915	Frame_Shift_Ins	INS	-	TCGA-OR-A5J5-01A-11D-A29I-10	221973	153295915	1974645	639	1083										
FLNA	2316	bcgsc.ca	37	chrX	153595114	153595114	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0046875	3	1	0.0608637246217832	0	0.062498494084765	0.166666666666667	0.794871794871796	0	ccctacctcctcctggtgtcCggccgggtcctccacgtaca	9	19	0	0	novel		TCGA-OR-A5J5-01A-11D-A29I-10	TCGA-OR-A5J5-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6471eb9c-c821-4738-b250-d8472bc987ef	eff987db-5671-487e-ac2c-4472ae5fdb2e	.	FLNA-599	NM_001456	exon6	c.G973A	p.G325R	GGTGTCCGGCCGG	.	126	117	43	2	.	4	0	4	0	0	T	153595114	C	T	153595114	3	4	5	1	0	0	0	0	1	0	0	0	5952	661	23	1	7142	1	FLNA	23	153595114	Missense_Mutation	SNP	C	TCGA-OR-A5J5-01A-11D-A29I-10	299199	153595114	1675446	640	1084										
ACAP3	116983	hgsc.bcm.edu	37	chr1	1229971	1229971	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0364963503649635	5	1	0.735915155005279	2.03112582781457	0.376134412558254	1	1	0	gcctcggcctcagtgtccccGtctgcctcaccgctggactc	10	19	3	0	novel		TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	ACAP3-90	NM_030649	exon21	c.C1950A	p.D650E	GTCCCCGTCTGCC	.	11	7	0	0	.	2	0	2	0	0	T	1229971	G	T	1229971	3	4	6	1	0	0	0	0	1	0	0	0	120	1136	40	2	570	2	ACAP3	1	1229971	Missense_Mutation	SNP	G	TCGA-OR-A5J6-01A-31D-A29I-10		1229971	248020650	1	1085										
PLEKHG5	57449	hgsc.bcm.edu	37	chr1	6529191	6529191	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0364963503649635	5	1	0.735915155005279	2.03112582781457	0.376134412558254	1	1	0	ctgtcctcgccttcctcctcCtcctcctcctcctcctcttc	2	24	1	0	rs149732859	byfrequency	TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	PLEKHG5-652	NM_001265592	exon20	c.G2397A	p.E799E	CTCCTCCTCCTCC	.	62	5	36	0	C|0.981;T|0.019	0	0	0	0	0	T	6529191	C	T	6529191	2	4	6	1	0	0	0	0	0	0	0	1	12102	680	24	3		3	PLEKHG5	1	6529191	Silent	SNP	C	TCGA-OR-A5J6-01A-31D-A29I-10	5299220	6529191	242721430	2	1086										
KLHDC7A	127707	hgsc.bcm.edu	37	chr1	18809305	18809305	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0364963503649635	5	1	0.735915155005279	2.03112582781457	0.376134412558254	1	1	0	cgttacgacccccgcctggaCcgctgggactttgccccgcc	11	19	0	0	rs114671250	byfrequency	TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	KLHDC7A-93	NM_152375	exon1	c.C1830T	p.D610D	CCTGGACCGCTGG	.	50	23	3	0	C|0.985;T|0.015	0	0	0	0	0	T	18809305	C	T	18809305	2	4	6	1	0	0	0	0	0	0	0	1	8381	506	18	3		3	KLHDC7A	1	18809305	Silent	SNP	C	TCGA-OR-A5J6-01A-31D-A29I-10	12280114	18809305	230441316	3	1087										
AHDC1	27245	hgsc.bcm.edu	37	chr1	27875518	27875520	+	In_Frame_Del	DEL	AGG	AGG	-													0.0364963503649635	5	1	0.735915155005279	2.03112582781457	0.376134412558254	1	1	0	cccctcagagctgctgaagaAggaggccttgcttggtggca					novel		TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	AGG	AGG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	AHDC1-90	NM_001029882	exon6	c.3107_3109del	p.1036_1037del	TGAAGAAGGAGGC	.	49	17	6	2	.	0	0	0	0	0	-	27875520	AGG	-	27875518	7	5	6	1	0	1	0	1	0	0	0	0	412	72	3	0	1706	0	AHDC1	1	27875518	In_Frame_Del	DEL	AGG	TCGA-OR-A5J6-01A-31D-A29I-10	9066213	27875518	221375103	4	1088										
MACF1	23499	broad.mit.edu	37	chr1	39852989	39852989	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0364963503649635	5	1	0.735915155005279	2.03112582781457	0.376134412558254	1	1	0	aactgcccaatttctgcaaaAttggagcggctacagtctca	8	11	2	0	novel		TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	MACF1-165	NM_012090	exon54	c.A8289G	p.K2763K	TGCAAAATTGGAG	.	118	4	110	0	.	0	0	0	0	0	G	39852989	A	G	39852989	2	3	6	1	0	0	0	0	0	0	0	1	9172	98	4	4		4	MACF1	1	39852989	Silent	SNP	A	TCGA-OR-A5J6-01A-31D-A29I-10	11977471	39852989	209397632	5	1089										
TIE1	7075	bcgsc.ca	37	chr1	43784956	43784956	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0364963503649635	5	1	0.735915155005279	2.03112582781457	0.376134412558254	1	1	0	gtgctggtcggagagaacctAgcctccaagattgcagactt	12	10	0	3	rs1199039	byfrequency	TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	TIE1-1404	NM_005424	exon18	c.A2973G	p.L991L	GAACCTAGCCTCC	.	219	6	214	2	A|0.697;G|0.303	46	46	0	0	0	G	43784956	A	G	43784956	2	3	6	1	0	0	0	0	0	0	0	1	15930	407	15	4		4	TIE1	1	43784956	Silent	SNP	A	TCGA-OR-A5J6-01A-31D-A29I-10	3931967	43784956	205465665	6	1090										
OMA1	115209	broad.mit.edu;bcgsc.ca	37	chr1	59004877	59004877	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0364963503649635	5	1	0.735915155005279	2.03112582781457	0.376134412558254	1	1	0	ccccgtgaggtggatgctaaTgtgttacattttctccagtt	10	9	1	1	novel		TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	OMA1-131	NM_145243	exon2	c.A90G	p.T30T	TGCTAATGTGTTA	.	47	6	66	0	.	7	6	1	0	0	C	59004877	T	C	59004877	2	2	6	1	0	0	0	0	0	0	0	1	10893	1451	51	4		4	OMA1	1	59004877	Silent	SNP	T	TCGA-OR-A5J6-01A-31D-A29I-10	15219921	59004877	190245744	7	1091										
SORT1	6272	bcgsc.ca	37	chr1	109884775	109884775	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0364963503649635	5	1	0.735915155005279	2.03112582781457	0.376134412558254	1	1	0	gaaacgtggatccttcttgtTgtatcctagaacagatgtca	9	8	2	2	rs2228604	byfrequency	TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	SORT1-91	NM_002959	exon9	c.A969C	p.T323T	TCTTGTTGTATCC	.	162	9	107	0	T|0.284;G|0.716	0	0	0	0	0	G	109884775	T	G	109884775	2	3	6	1	0	0	0	0	0	0	0	1	14970	1799	63	5		5	SORT1	1	109884775	Silent	SNP	T	TCGA-OR-A5J6-01A-31D-A29I-10	50879898	109884775	139365846	8	1092										
LCE1E	353135	ucsc.edu;bcgsc.ca	37	chr1	152760075	152760075	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0364963503649635	5	1	0.735915155005279	2.03112582781457	0.376134412558254	1	1	0	gactgctgcagccagccctcAgggggctccagctgctgtgg	15	14	1	0	rs201660535	byfrequency	TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	LCE1E-90	NM_178353	exon2	c.A300G	p.S100S	GCCCTCAGGGGGC	.	130	28	78	3	A|0.995;G|0.005	0	0	0	0	0	G	152760075	A	G	152760075	2	3	6	1	0	0	0	0	0	0	0	1	8685	175	7	4		4	LCE1E	1	152760075	Silent	SNP	A	TCGA-OR-A5J6-01A-31D-A29I-10	42875300	152760075	96490546	9	1093										
ARHGAP30	257106	bcgsc.ca	37	chr1	161017556	161017556	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0364963503649635	5	1	0.735915155005279	2.03112582781457	0.376134412558254	1	1	0	tgtgtttcaaatgcatatgaCctgcgctgagaggacaacag	11	8	1	2	rs2774279	byfrequency	TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	ARHGAP30-25	NM_001025598	exon12	c.G3255A	p.R1085R	ATATGACCTGCGC	.	93	5	95	0	C|0.752;T|0.248	5	5	0	0	0	T	161017556	C	T	161017556	2	4	6	1	0	0	0	0	0	0	0	1	879	506	18	3		3	ARHGAP30	1	161017556	Silent	SNP	C	TCGA-OR-A5J6-01A-31D-A29I-10	8257481	161017556	88233065	10	1094										
TOR3A	64222	hgsc.bcm.edu	37	chr1	179051300	179051300	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0364963503649635	5	1	0.735915155005279	2.03112582781457	0.376134412558254	1	1	0	ggcgccagctttggctctttTtcctgctgctgctcccgggc	12	15	1	0	rs2296377	byfrequency	TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	TOR3A-90	NM_022371	exon1	c.T37C	p.F13L	CTCTTTTTCCTGC	.	6	6	0	0	T|0.229;C|0.771	0	0	0	0	0	C	179051300	T	C	179051300	3	2	6	1	0	0	0	0	1	0	0	0	16414	1841	64	4	39	4	TOR3A	1	179051300	Missense_Mutation	SNP	T	TCGA-OR-A5J6-01A-31D-A29I-10	18033744	179051300	70199321	11	1095										
CHIT1	1118	bcgsc.ca	37	chr1	203186947	203186947	+	Missense_Mutation	SNP	G	G	C													0.0364963503649635	5	1	0.735915155005279	2.03112582781457	0.376134412558254	1	1	0	caaagtcatctaagtccagtGcccagaccatggccccgccc					rs201682373	byfrequency	TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	CHIT1-90	NM_003465	exon10	c.C1076G	p.A359G	TCCAGTGCCCAGA	.	68	6	46	0	G|0.988;C|0.012	0	0	0	0	0	C	203186947	G	C	203186947	3	2	6	1	0	0	0	0	1	0	0	0	3352	1319	46	3	332	3	CHIT1	1	203186947	Missense_Mutation	SNP	G	TCGA-OR-A5J6-01A-31D-A29I-10	24135647	203186947	46063674	12	1096	10	2								
CHIT1	1118	bcgsc.ca	37	chr1	203186950	203186950	+	Nonsense_Mutation	SNP	C	C	T													0.0364963503649635	5	1	0.735915155005279	2.03112582781457	0.376134412558254	1	1	0	agtcatctaagtccagtgccCagaccatggccccgcccagt					rs201320385	byfrequency	TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	CHIT1-90	NM_003465	exon10	c.G1073A	p.W358X	AGTGCCCAGACCA	.	69	8	45	0	C|0.989;T|0.011	0	0	0	0	0	T	203186950	C	T	203186950	4	4	6	1	0	0	0	0	0	1	0	0	3352	595	21	3	335	3	CHIT1	1	203186950	Nonsense_Mutation	SNP	C	TCGA-OR-A5J6-01A-31D-A29I-10	3	203186950	46063671	13	1097	10	2								
RASSF5	83593	hgsc.bcm.edu	37	chr1	206681323	206681323	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0364963503649635	5	1	0.735915155005279	2.03112582781457	0.376134412558254	1	1	0	actgcttcgccgagttggtgCtgccgggcggccccggctgg	17	14	0	0	rs77707044	byfrequency	TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	RASSF5-660	NM_182663	exon1	c.C388T	p.L130L	TTGGTGCTGCCGG	.	33	24	0	0	C|0.970;T|0.030	0	0	0	0	0	T	206681323	C	T	206681323	2	4	6	1	0	0	0	0	0	0	0	1	13124	796	28	3		3	RASSF5	1	206681323	Silent	SNP	C	TCGA-OR-A5J6-01A-31D-A29I-10	3494373	206681323	42569298	14	1098										
CENPF	1063	broad.mit.edu	37	chr1	214818291	214818291	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0364963503649635	5	1	0.735915155005279	2.03112582781457	0.376134412558254	1	1	0	acttcatgtgatagaggaccGtgacagaaaagttgaaagtt	11	5	1	5	rs143725699	byfrequency	TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	CENPF-567	NM_016343	exon13	c.G5378A	p.R1793H	AGGACCGTGACAG	.	111	4	102	0	G|0.998;A|0.002	0	0	0	0	0	A	214818291	G	A	214818291	3	1	6	1	0	0	0	0	1	0	0	0	3237	1145	40	1	5424	1	CENPF	1	214818291	Missense_Mutation	SNP	G	TCGA-OR-A5J6-01A-31D-A29I-10	8136968	214818291	34432330	15	1099										
TRIM58	25893	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	248039251	248039251	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0364963503649635	5	1	0.735915155005279	2.03112582781457	0.376134412558254	1	1	0	cacccgagtctgctcttgacCgccgacctgcgcagtgtgca	11	16	2	1	rs201527424	alternate_allele	TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	TRIM58-96	NM_015431	exon6	c.C921T	p.T307T	CTTGACCGCCGAC	.	126	35	94	0	C|1.000;G|0.000	0	0	0	0	0	T	248039251	C	T	248039251	2	4	6	1	0	0	0	0	0	0	0	1	16569	639	23	1		1	TRIM58	1	248039251	Silent	SNP	C	TCGA-OR-A5J6-01A-31D-A29I-10	33220960	248039251	1211370	16	1100										
OR2M5	127059	broad.mit.edu	37	chr1	248308612	248308612	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0364963503649635	5	1	0.735915155005279	2.03112582781457	0.376134412558254	1	1	0	tcatctacctggacacccagCtccacacccccatgtacttc	4	19	2	0	novel		TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	OR2M5-71	NM_001004690	exon1	c.C163T	p.L55F	ACCCAGCTCCACA	.	333	7	280	0	.	0	0	0	0	0	T	248308612	C	T	248308612	3	4	6	1	0	0	0	0	1	0	0	0	11042	797	28	3	165	3	OR2M5	1	248308612	Missense_Mutation	SNP	C	TCGA-OR-A5J6-01A-31D-A29I-10	269361	248308612	942009	17	1101										
NTSR2	23620	hgsc.bcm.edu	37	chr2	11810118	11810118	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0364963503649635	5	1	0.735915155005279	2.03112582781457	0.376134412558254	1	1	0	gacagcgcattgcccgccgcGcccagcgcccagatgagtgc	13	17	0	2	rs113661052		TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	NTSR2-946	NM_012344	exon1	c.C138G	p.G46G	CGCCGCGCCCAGC	.	23	13	0	0	G|0.500;C|0.500	1	0	1	0	0	C	11810118	G	C	11810118	2	2	6	1	0	0	0	0	0	0	0	1	10740	1074	38	2		2	NTSR2	2	11810118	Silent	SNP	G	TCGA-OR-A5J6-01A-31D-A29I-10		11810118	231389255	18	1102										
DNAH6	1768	broad.mit.edu	37	chr2	84880658	84880658	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0364963503649635	5	1	0.735915155005279	2.03112582781457	0.376134412558254	1	1	0	caagaccacagtttaccgaaTactagcagaaactttaggga	8	9	0	2	novel		TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	DNAH6-69	NM_001370	exon34	c.T5294C	p.I1765T	ACCGAATACTAGC	.	140	6	106	0	.	0	0	0	0	0	C	84880658	T	C	84880658	3	2	6	1	0	0	0	0	1	0	0	0	4616	1406	49	4	5424	4	DNAH6	2	84880658	Missense_Mutation	SNP	T	TCGA-OR-A5J6-01A-31D-A29I-10	73070540	84880658	158318715	19	1103										
C2orf40	84417	hgsc.bcm.edu	37	chr2	106682226	106682226	+	Silent	SNP	T	T	C													0.0364963503649635	5	1	0.735915155005279	2.03112582781457	0.376134412558254	1	1	0	tcgcgccccgccgccatggcTgcctcccccgcgcggcctgc					rs4271786		TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	C2orf40-90	NM_032411	exon1	c.T6C	p.A2A	CATGGCTGCCTCC	.	4	4	0	0	T|0.765;C|0.235	0	0	0	0	0	C	106682226	T	C	106682226	2	2	6	1	0	0	0	0	0	0	0	1	2171	1567	55	4		4	C2orf40	2	106682226	Silent	SNP	T	TCGA-OR-A5J6-01A-31D-A29I-10	21801568	106682226	136517147	20	1104	11	2								
C2orf40	84417	hgsc.bcm.edu	37	chr2	106682235	106682235	+	Silent	SNP	C	C	G													0.0364963503649635	5	1	0.735915155005279	2.03112582781457	0.376134412558254	1	1	0	gccgccatggctgcctccccCgcgcggcctgctgtcctggc					rs4266035		TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	C2orf40-90	NM_032411	exon1	c.C15G	p.P5P	CTCCCCCGCGCGG	.	5	5	0	0	C|0.795;G|0.205	0	0	0	0	0	G	106682235	C	G	106682235	2	3	6	1	0	0	0	0	0	0	0	1	2171	639	23	2		2	C2orf40	2	106682235	Silent	SNP	C	TCGA-OR-A5J6-01A-31D-A29I-10	9	106682235	136517138	21	1105	11	2								
SH3RF3	344558	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	110053528	110053528	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.0364963503649635	5	1	0.735915155005279	2.03112582781457	0.376134412558254	1	1	0	cgcccagcaccccacagcctCgcccccaacaggcagctgtc	8	22	0	0	novel		TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	SH3RF3-24	NM_001099289	exon7	c.C1754G	p.S585W	CAGCCTCGCCCCC	.	259	53	26	0	.	3	2	1	0	0	G	110053528	C	G	110053528	3	3	6	1	0	0	0	0	1	0	0	0	14295	893	31	2	1780	2	SH3RF3	2	110053528	Missense_Mutation	SNP	C	TCGA-OR-A5J6-01A-31D-A29I-10	3371293	110053528	133145845	22	1106										
TMEM177	80775	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	120439176	120439176	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0364963503649635	5	1	0.735915155005279	2.03112582781457	0.376134412558254	1	1	0	gcctgtggtggagtggagttCtatgagaagcttctgtcggg	17	6	2	1	novel		TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	TMEM177-91	NM_001105198	exon2	c.C747G	p.F249L	GGAGTTCTATGAG	.	170	30	132	0	.	7	5	2	0	0	G	120439176	C	G	120439176	3	3	6	1	0	0	0	0	1	0	0	0	16131	912	32	3	749	3	TMEM177	2	120439176	Missense_Mutation	SNP	C	TCGA-OR-A5J6-01A-31D-A29I-10	10385648	120439176	122760197	23	1107										
SCN2A	6326	ucsc.edu;bcgsc.ca	37	chr2	166201291	166201291	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0364963503649635	5	1	0.735915155005279	2.03112582781457	0.376134412558254	1	1	0	gcacatgcatgactttttccActccttcctgatcgtgttcc	6	14	0	2	novel		TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	SCN2A-142	NM_001040143	exon15	c.A2789T	p.H930L	TTTTCCACTCCTT	.	660	141	458	4	.	2	2	0	0	0	T	166201291	A	T	166201291	3	4	6	1	0	0	0	0	1	0	0	0	13951	159	6	5	2943	5	SCN2A	2	166201291	Missense_Mutation	SNP	A	TCGA-OR-A5J6-01A-31D-A29I-10	45762115	166201291	76998082	24	1108										
LRP2	4036	bcgsc.ca	37	chr2	170032989	170032989	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0364963503649635	5	1	0.735915155005279	2.03112582781457	0.376134412558254	1	1	0	cagtaggtgctgccactcagCtgaagggtgcggaagtcatc	14	10	2	1	rs2229265	byfrequency	TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	LRP2-175	NM_004525	exon54	c.G10503A	p.Q3501Q	ACTCAGCTGAAGG	.	229	7	191	0	T|0.264;G|0.268	0	0	0	0	0	T	170032989	C	T	170032989	2	4	6	1	0	0	0	0	0	0	0	1	8983	796	28	3		3	LRP2	2	170032989	Silent	SNP	C	TCGA-OR-A5J6-01A-31D-A29I-10	3831698	170032989	73166384	25	1109										
CACNA1D	776	broad.mit.edu	37	chr3	53529193	53529195	+	Frame_Shift_Del	DEL	GAT	GAT	-													0.0364963503649635	5	1	0.735915155005279	2.03112582781457	0.376134412558254	1	1	0	tcgctcaataaatgttcgtgGatgatgatgatgatgatgat					novel		TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	CACNA1D-100	NM_001128840	wholegene			TTCGTGGATGATG	.	461	8	272	0	.	0	0	0	0	0	-	53529195	GAT	-	53529193	7	5	6	1	0	1	0	1	0	0	0	0	2547	1189	41	0	2	0	CACNA1D	3	53529193	Frame_Shift_Del	DEL	GAT	TCGA-OR-A5J6-01A-31D-A29I-10		53529193	144493237	26	1110										
PPP4R2	151987	broad.mit.edu;bcgsc.ca	37	chr3	73096477	73096477	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0364963503649635	5	1	0.735915155005279	2.03112582781457	0.376134412558254	1	1	0	ctttgatgaaatgaaggaaaGaatactgaaaattgtcactg	9	4	1	5	novel		TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	PPP4R2-227	NM_174907	exon3	c.G257C	p.R86T	AGGAAAGAATACT	.	281	9	316	0	.	13	11	2	0	0	C	73096477	G	C	73096477	3	2	6	1	0	0	0	0	1	0	0	0	12436	942	33	3	267	3	PPP4R2	3	73096477	Missense_Mutation	SNP	G	TCGA-OR-A5J6-01A-31D-A29I-10	19567284	73096477	124925953	27	1111										
MUC13	56667	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	124629329	124629329	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0364963503649635	5	1	0.735915155005279	2.03112582781457	0.376134412558254	1	1	0	agcgatggtgcccacaatagTgaggatcagctgaaattctg	12	8	2	2	novel		TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	MUC13-90	NM_033049	exon10	c.A1267G	p.T423A	CAATAGTGAGGAT	.	143	35	226	0	.	0	0	0	0	0	C	124629329	T	C	124629329	3	2	6	1	0	0	0	0	1	0	0	0	9999	1696	59	4	276	4	MUC13	3	124629329	Missense_Mutation	SNP	T	TCGA-OR-A5J6-01A-31D-A29I-10	51532852	124629329	73393101	28	1112										
PLXNA1	5361	hgsc.bcm.edu	37	chr3	126733329	126733329	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0364963503649635	5	1	0.735915155005279	2.03112582781457	0.376134412558254	1	1	0	tgcctccctcagctgtccccCgagacgggcccgaggcaggg	14	17	1	1	rs80308004	byfrequency	TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	PLXNA1-93	NM_032242	exon12	c.C2613T	p.P871P	GTCCCCCGAGACG	.	37	7	0	0	C|0.959;T|0.041	0	0	0	0	0	T	126733329	C	T	126733329	2	4	6	1	0	0	0	0	0	0	0	1	12148	639	23	1		1	PLXNA1	3	126733329	Silent	SNP	C	TCGA-OR-A5J6-01A-31D-A29I-10	2104000	126733329	71289101	29	1113										
RAB43	339122	hgsc.bcm.edu	37	chr3	128840321	128840321	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0364963503649635	5	1	0.735915155005279	2.03112582781457	0.376134412558254	1	1	0	gggtcccccgggcctgggccCggccctgccatggcctagaa	15	17	0	1	rs76233276	byfrequency	TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	RAB43-369	NM_001204886	exon2	c.G12A	p.P4P	TGGGCCCGGCCCT	.	41	7	7	0	C|0.954;T|0.046	0	0	0	0	0	T	128840321	C	T	128840321	2	4	6	1	0	0	0	0	0	0	0	1	12980	639	23	1		1	RAB43	3	128840321	Silent	SNP	C	TCGA-OR-A5J6-01A-31D-A29I-10	2106992	128840321	69182109	30	1114										
MYNN	55892	bcgsc.ca	37	chr3	169492101	169492101	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0364963503649635	5	1	0.735915155005279	2.03112582781457	0.376134412558254	1	1	0	aaaatgcagtattcgcaccaCtgtgagcaccttttagagag	9	9	0	2	rs10936599	byfrequency	TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	MYNN-91	NM_001185118	exon3	c.C18T	p.H6H	GCACCACTGTGAG	.	104	5	120	0	C|0.763;T|0.237	8	8	0	0	0	T	169492101	C	T	169492101	2	4	6	1	0	0	0	0	0	0	0	1	10089	564	20	3		3	MYNN	3	169492101	Silent	SNP	C	TCGA-OR-A5J6-01A-31D-A29I-10	40651780	169492101	28530329	31	1115										
KCNMB2	10242	bcgsc.ca	37	chr3	178546026	178546026	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0364963503649635	5	1	0.735915155005279	2.03112582781457	0.376134412558254	1	1	0	tccatcacggaaacatttaaTtgctccttcagctgtggtcc	7	12	2	0	rs9831934	byfrequency	TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	KCNMB2-91	NM_005832	exon5	c.T288C	p.N96N	ATTTAATTGCTCC	.	128	5	131	1	T|0.360;C|0.640	0	0	0	0	0	C	178546026	T	C	178546026	2	2	6	1	0	0	0	0	0	0	0	1	8096	1490	52	4		4	KCNMB2	3	178546026	Silent	SNP	T	TCGA-OR-A5J6-01A-31D-A29I-10	9053925	178546026	19476404	32	1116										
HRG	3273	bcgsc.ca	37	chr3	186395436	186395436	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0364963503649635	5	1	0.735915155005279	2.03112582781457	0.376134412558254	1	1	0	gaggcccaggtaaaggacccCgtcccttccattgcagacaa	10	14	0	1	rs1042445	byfrequency	TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	HRG-91	NM_000412	exon7	c.C1342T	p.R448C	GGACCCCGTCCCT	.	150	7	175	0	C|0.751;T|0.249	0	0	0	0	0	T	186395436	C	T	186395436	3	4	6	1	0	0	0	0	1	0	0	0	7375	652	23	1	1368	1	HRG	3	186395436	Missense_Mutation	SNP	C	TCGA-OR-A5J6-01A-31D-A29I-10	7849410	186395436	11626994	33	1117										
MUC4	4585	bcgsc.ca	37	chr3	195477786	195477786	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0364963503649635	5	1	0.735915155005279	2.03112582781457	0.376134412558254	1	1	0	tcacatcgcgcacgtcttccCcggagatgggctggaagacc	12	14	2	2	rs6808605	byfrequency	TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	MUC4-90	NM_018406	exon23	c.G15845A	p.G5282E	TCTTCCCCGGAGA	.	132	5	131	0	C|0.901;T|0.099	0	0	0	0	0	T	195477786	C	T	195477786	3	4	6	1	0	0	0	0	1	0	0	0	10006	623	22	3	405	3	MUC4	3	195477786	Missense_Mutation	SNP	C	TCGA-OR-A5J6-01A-31D-A29I-10	9082350	195477786	2544644	34	1118										
MUC4	4585	bcgsc.ca	37	chr3	195510011	195510011	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0364963503649635	5	1	0.735915155005279	2.03112582781457	0.376134412558254	1	1	0	ggtgacaggaagagaggtggCgtgacctgtggacactgacg	18	7	0	4	novel		TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	MUC4-90	NM_018406	exon2	c.G8440A	p.A2814T	AGGTGGCGTGACC	.	499	20	465	10	.	0	0	0	0	0	T	195510011	C	T	195510011	3	4	6	1	0	0	0	0	1	0	0	0	10006	768	27	1		1	MUC4	3	195510011	Missense_Mutation	SNP	C	TCGA-OR-A5J6-01A-31D-A29I-10	32225	195510011	2512419	35	1119										
CRIPAK	285464	hgsc.bcm.edu	37	chr4	1389192	1389192	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0364963503649635	5	1	0.735915155005279	2.03112582781457	0.376134412558254	1	1	0	gctcacacgtgcccatgtggAgtgcccgcctgctcacacgt	11	16	2	0	rs146804633	byfrequency	TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	CRIPAK-90	NM_175918	exon1	c.A893G	p.E298G	ATGTGGAGTGCCC	.	42	12	5	0	A|0.995;G|0.005	61	51	10	0	0	G	1389192	A	G	1389192	3	3	6	1	0	0	0	0	1	0	0	0	3883	304	11	4	895	4	CRIPAK	4	1389192	Missense_Mutation	SNP	A	TCGA-OR-A5J6-01A-31D-A29I-10		1389192	189765084	36	1120										
HGFAC	3083	hgsc.bcm.edu	37	chr4	3446682	3446682	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0364963503649635	5	1	0.735915155005279	2.03112582781457	0.376134412558254	1	1	0	cacgtggactccgtgggcgcCgcggccctgctgggcctggg	18	15	0	0	rs144021102		TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	HGFAC-514	NM_001528	exon8	c.C978T	p.A326A	GGGCGCCGCGGCC	.	25	17	1	0	C|0.997;T|0.003	1	1	0	0	0	T	3446682	C	T	3446682	2	4	6	1	0	0	0	0	0	0	0	1	7107	639	23	1		1	HGFAC	4	3446682	Silent	SNP	C	TCGA-OR-A5J6-01A-31D-A29I-10	2057490	3446682	187707594	37	1121										
MAN2B2	23324	broad.mit.edu	37	chr4	6621656	6621656	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0364963503649635	5	1	0.735915155005279	2.03112582781457	0.376134412558254	1	1	0	ctgctcctctccctgcaggcTgtgctgcaggcgctggggtc	14	15	1	0	novel		TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	MAN2B2-92	NM_015274	exon18	c.T2817C	p.A939A	GCAGGCTGTGCTG	.	101	4	41	0	.	3	3	0	0	0	C	6621656	T	C	6621656	2	2	6	1	0	0	0	0	0	0	0	1	9245	1567	55	4		4	MAN2B2	4	6621656	Silent	SNP	T	TCGA-OR-A5J6-01A-31D-A29I-10	3174974	6621656	184532620	38	1122										
TBC1D1	23216	bcgsc.ca	37	chr4	37904089	37904089	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0364963503649635	5	1	0.735915155005279	2.03112582781457	0.376134412558254	1	1	0	ttaaggaagacgctgtccacCggcagagtatctgctatgtg	12	9	1	2	rs35859249	byfrequency	TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	TBC1D1-91	NM_015173	exon2	c.C373T	p.R125W	GTCCACCGGCAGA	.	107	6	84	0	C|0.922;T|0.078	1	1	0	0	0	T	37904089	C	T	37904089	3	4	6	1	0	0	0	0	1	0	0	0	15634	643	23	1	375	1	TBC1D1	4	37904089	Missense_Mutation	SNP	C	TCGA-OR-A5J6-01A-31D-A29I-10	31282433	37904089	153250187	39	1123										
ADAMTS3	9508	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	73280551	73280551	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0364963503649635	5	1	0.735915155005279	2.03112582781457	0.376134412558254	1	1	0	cctctgtagtggaagtctttGgacatgtctatgggagcctg	13	8	3	0	novel		TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	ADAMTS3-651	NM_014243	exon4	c.C642G	p.S214S	GTCTTTGGACATG	.	97	17	98	0	.	0	0	0	0	0	C	73280551	G	C	73280551	2	2	6	1	0	0	0	0	0	0	0	1	267	1335	47	3		3	ADAMTS3	4	73280551	Silent	SNP	G	TCGA-OR-A5J6-01A-31D-A29I-10	35376462	73280551	117873725	40	1124										
MTHFD2L	441024	broad.mit.edu;bcgsc.ca	37	chr4	75066988	75066988	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0364963503649635	5	1	0.735915155005279	2.03112582781457	0.376134412558254	1	1	0	ctgtattttaaggaattcaaAcatttggaaaaaatgtggtt	8	3	1	0	novel		TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	MTHFD2L-91	NM_001144978	exon5	c.A613G	p.T205A	ATTCAAACATTTG	.	125	6	102	0	.	0	0	0	0	0	G	75066988	A	G	75066988	3	3	6	1	0	0	0	0	1	0	0	0	9958	43	2	4	631	4	MTHFD2L	4	75066988	Missense_Mutation	SNP	A	TCGA-OR-A5J6-01A-31D-A29I-10	1786437	75066988	116087288	41	1125										
ANAPC10	10393	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	145916557	145916557	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0364963503649635	5	1	0.735915155005279	2.03112582781457	0.376134412558254	1	1	0	acgatacatcatgaaatctaTagttgtacatctaggaaatt	6	6	3	1	novel		TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	ANAPC10-650	NM_001256709	exon7	c.A559G	p.I187V	AATCTATAGTTGT	.	47	12	59	0	.	14	8	6	0	0	C	145916557	T	C	145916557	3	2	6	1	0	0	0	0	1	0	0	0	599	1406	49	4	35	4	ANAPC10	4	145916557	Missense_Mutation	SNP	T	TCGA-OR-A5J6-01A-31D-A29I-10	70849569	145916557	45237719	42	1126										
ZDHHC11	79844	broad.mit.edu	37	chr5	825360	825360	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0364963503649635	5	1	0.735915155005279	2.03112582781457	0.376134412558254	1	1	0	atcagcagggagctcttggcTttgactctggtgggacagaa	14	8	3	2	rs201174878		TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	ZDHHC11-92	NM_024786	exon8	c.A942G	p.K314K	CTTGGCTTTGACT	.	212	9	136	0	T|0.999;C|0.001	0	0	0	0	0	C	825360	T	C	825360	2	2	6	1	0	0	0	0	0	0	0	1	17638	1606	56	4		4	ZDHHC11	5	825360	Silent	SNP	T	TCGA-OR-A5J6-01A-31D-A29I-10		825360	180089900	43	1127										
C5orf38	153571	hgsc.bcm.edu	37	chr5	2752393	2752393	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0364963503649635	5	1	0.735915155005279	2.03112582781457	0.376134412558254	1	1	0	gtcaggatggtggcgcccgcGgctcgggtcttcctccgggc	17	14	2	0	rs185444055		TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	C5orf38-226	NM_178569	exon1	c.G15C	p.A5A	GCCCGCGGCTCGG	.	67	37	6	0	G|0.990;C|0.010	0	0	0	0	0	C	2752393	G	C	2752393	2	2	6	1	0	0	0	0	0	0	0	1	2302	1103	39	2		2	C5orf38	5	2752393	Silent	SNP	G	TCGA-OR-A5J6-01A-31D-A29I-10	1927033	2752393	178162867	44	1128										
OTP	23440	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	76932656	76932656	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.0364963503649635	5	1	0.735915155005279	2.03112582781457	0.376134412558254	1	1	0	cccctcgtacctgcactcggGactcggtcagcccgatacgc	10	18	1	0	novel		TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	OTP-69	NM_032109	exon2	c.C437G	p.S146C	ACTCGGGACTCGG	.	218	45	149	2	.	0	0	0	0	0	C	76932656	G	C	76932656	3	2	6	1	0	0	0	0	1	0	0	0	11339	1174	41	3	548	3	OTP	5	76932656	Missense_Mutation	SNP	G	TCGA-OR-A5J6-01A-31D-A29I-10	74180263	76932656	103982604	45	1129										
ADAMTS19	171019	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	128864313	128864313	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0364963503649635	5	1	0.735915155005279	2.03112582781457	0.376134412558254	1	1	0	gaatgatatacatttagagaTgtcaacaaactggggggaag	12	4	1	2	novel		TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	ADAMTS19-295	NM_133638	exon6	c.T1253A	p.M418K	TAGAGATGTCAAC	.	173	30	143	0	.	0	0	0	0	0	A	128864313	T	A	128864313	3	1	6	1	0	0	0	0	1	0	0	0	264	1464	51	5	1275	5	ADAMTS19	5	128864313	Missense_Mutation	SNP	T	TCGA-OR-A5J6-01A-31D-A29I-10	51931657	128864313	52050947	46	1130										
NRG2	9542	hgsc.bcm.edu	37	chr5	139422602	139422602	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0364963503649635	5	1	0.735915155005279	2.03112582781457	0.376134412558254	1	1	0	tgtcgctgtagctgctgcacCgacccttctccagtggcggc	12	15	1	0	rs188534354		TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	NRG2-526	NM_013982	exon1	c.G53A	p.R18Q	CTGCACCGACCCT	.	15	12	2	0	C|0.993;T|0.007	1	1	0	0	0	T	139422602	C	T	139422602	3	4	6	1	0	0	0	0	1	0	0	0	10677	652	23	1	2630	1	NRG2	5	139422602	Missense_Mutation	SNP	C	TCGA-OR-A5J6-01A-31D-A29I-10	10558289	139422602	41492658	47	1131										
PCDHB6	56130	broad.mit.edu	37	chr5	140531248	140531248	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0364963503649635	5	1	0.735915155005279	2.03112582781457	0.376134412558254	1	1	0	cccgccctgcacatcggcagCgtcagcgccacagacagaga	11	17	1	2	novel		TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	PCDHB6-91	NM_018939	exon1	c.C1410T	p.S470S	CGGCAGCGTCAGC	.	303	17	67	0	.	14	7	7	0	0	T	140531248	C	T	140531248	2	4	6	1	0	0	0	0	0	0	0	1	11575	767	27	1		1	PCDHB6	5	140531248	Silent	SNP	C	TCGA-OR-A5J6-01A-31D-A29I-10	1108646	140531248	40384012	48	1132										
PCDHB8	56128	hgsc.bcm.edu	37	chr5	140559514	140559514	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0364963503649635	5	1	0.735915155005279	2.03112582781457	0.376134412558254	1	1	0	accgccaggctgctgagcgaGcgcgacgcggccaagcagag	16	14	0	2	rs142690275	byfrequency	TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	PCDHB8-131	NM_019120	exon1	c.G1899A	p.E633E	GAGCGAGCGCGAC	.	32	20	0	0	G|0.986;A|0.014	5	5	0	0	0	A	140559514	G	A	140559514	2	1	6	1	0	0	0	0	0	0	0	1	11577	962	34	3		3	PCDHB8	5	140559514	Silent	SNP	G	TCGA-OR-A5J6-01A-31D-A29I-10	28266	140559514	40355746	49	1133										
GLRA1	2741	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	151231120	151231120	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0364963503649635	5	1	0.735915155005279	2.03112582781457	0.376134412558254	1	1	0	tctgaatcaggtagtaacccAtctgccgctccaggtggaac	10	12	3	1	novel		TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	GLRA1-91	NM_000171	exon7	c.T743A	p.M248K	TAACCCATCTGCC	.	264	60	173	0	.	0	0	0	0	0	T	151231120	A	T	151231120	3	4	6	1	0	0	0	0	1	0	0	0	6474	217	8	5	642	5	GLRA1	5	151231120	Missense_Mutation	SNP	A	TCGA-OR-A5J6-01A-31D-A29I-10	10671606	151231120	29684140	50	1134										
HIST1H1E	3008	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr6	26157045	26157045	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0364963503649635	5	1	0.735915155005279	2.03112582781457	0.376134412558254	1	1	0	agaagcccaagaaggcgacgGgggcggccacccccaagaag	15	13	0	3	novel		TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	HIST1H1E-154	NM_005321	exon1	c.G427T	p.G143W	GCGACGGGGGCGG	.	138	37	51	0	.	0	0	0	0	0	T	26157045	G	T	26157045	3	4	6	1	0	0	0	0	1	0	0	0	7147	1232	43	3	429	3	HIST1H1E	6	26157045	Missense_Mutation	SNP	G	TCGA-OR-A5J6-01A-31D-A29I-10		26157045	144958022	51	1135										
HLA-A	3105	bcgsc.ca	37	chr6	29910688	29910688	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0364963503649635	5	1	0.735915155005279	2.03112582781457	0.376134412558254	1	1	0	gagccgcgggcgccgtggatAgagcaggaggggccggagta	21	9	0	1	rs41544012	byfrequency	TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	HLA-A-92	NM_001242758	exon2	c.A228G	p.I76M	GTGGATAGAGCAG	.	516	39	110	2	A|0.885;G|0.115	2212	2208	2	1	1	G	29910688	A	G	29910688	3	3	6	1	0	0	0	0	1	0	0	0	7216	410	15	4	234	4	HLA-A	6	29910688	Missense_Mutation	SNP	A	TCGA-OR-A5J6-01A-31D-A29I-10	3753643	29910688	141204379	52	1136										
CPNE5	57699	hgsc.bcm.edu	37	chr6	36710069	36710069	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0364963503649635	5	1	0.735915155005279	2.03112582781457	0.376134412558254	1	1	0	atgtgcgtgtgcaggggggaCgcagggggcgtgcgggctgg	24	7	0	0	rs150763631	byfrequency	TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	CPNE5-91	NM_020939	exon21	c.G1758T	p.A586A	GGGGGACGCAGGG	.	13	4	0	0	C|0.989;A|0.011	1	0	1	0	0	A	36710069	C	A	36710069	2	1	6	1	0	0	0	0	0	0	0	1	3821	523	19	2		2	CPNE5	6	36710069	Silent	SNP	C	TCGA-OR-A5J6-01A-31D-A29I-10	6799381	36710069	134404998	53	1137										
POLR1C	9533	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr6	43485110	43485110	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0364963503649635	5	1	0.735915155005279	2.03112582781457	0.376134412558254	1	1	0	cctgggaccaggaccgcttcGagaaggtaagtggggccgga	17	10	0	1	novel		TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	POLR1C-90	NM_203290	exon2	c.G136A	p.E46K	CGCTTCGAGAAGG	.	154	8	87	0	.	0	0	0	0	0	A	43485110	G	A	43485110	3	1	6	1	0	0	0	0	1	0	0	0	12240	1059	37	1	142	1	POLR1C	6	43485110	Missense_Mutation	SNP	G	TCGA-OR-A5J6-01A-31D-A29I-10	6775041	43485110	127629957	54	1138										
IGF2R	3482	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	160453715	160453715	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0364963503649635	5	1	0.735915155005279	2.03112582781457	0.376134412558254	1	1	0	gcgagcagcaggatgtctccAtagacctcacaccacttgcc	9	15	2	1	novel		TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	IGF2R-118	NM_000876	exon8	c.A1015G	p.I339V	GTCTCCATAGACC	.	119	18	52	0	.	17	8	9	0	0	G	160453715	A	G	160453715	3	3	6	1	0	0	0	0	1	0	0	0	7597	217	8	4	1045	4	IGF2R	6	160453715	Missense_Mutation	SNP	A	TCGA-OR-A5J6-01A-31D-A29I-10	116968605	160453715	10661352	55	1139										
SMOC2	64094	hgsc.bcm.edu	37	chr6	168842113	168842113	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0364963503649635	5	1	0.735915155005279	2.03112582781457	0.376134412558254	1	1	0	ctgctcccgccggtgcccgcTcagaagttctcggcgctcac	11	18	3	1	rs73270928	byfrequency	TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	SMOC2-91	NM_022138	exon1	c.T63G	p.A21A	GCCCGCTCAGAAG	.	7	7	0	0	T|0.654;G|0.346	0	0	0	0	0	G	168842113	T	G	168842113	2	3	6	1	0	0	0	0	0	0	0	1	14837	1538	54	5		5	SMOC2	6	168842113	Silent	SNP	T	TCGA-OR-A5J6-01A-31D-A29I-10	8388398	168842113	2272954	56	1140										
RADIL	55698	hgsc.bcm.edu	37	chr7	4841489	4841489	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0364963503649635	5	1	0.735915155005279	2.03112582781457	0.376134412558254	1	1	0	ctgggttgccttccagggggGgcctgtgcccagggagcccc	17	14	0	0	rs151229803		TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	RADIL-994	NM_018059	exon12	c.C2637T	p.A879A	AGGGGGGGCCTGT	.	17	12	1	0	G|0.991;A|0.009	2	1	1	0	0	A	4841489	G	A	4841489	2	1	6	1	0	0	0	0	0	0	0	1	13032	1219	43	3		3	RADIL	7	4841489	Silent	SNP	G	TCGA-OR-A5J6-01A-31D-A29I-10		4841489	154297174	57	1141										
GARS	2617	hgsc.bcm.edu	37	chr7	30634661	30634661	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0364963503649635	5	1	0.735915155005279	2.03112582781457	0.376134412558254	1	1	0	ccctcagcgcggcctcctgcCccccgatctccttgcccgcc	8	24	2	0	rs1049402	byfrequency	TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	GARS-91	NM_002047	exon1	c.C124G	p.P42A	TCCTGCCCCCCGA	.	4	4	0	0	C|0.329;G|0.671	7	0	7	0	0	G	30634661	C	G	30634661	3	3	6	1	0	0	0	0	1	0	0	0	6262	623	22	3	126	3	GARS	7	30634661	Missense_Mutation	SNP	C	TCGA-OR-A5J6-01A-31D-A29I-10	25793172	30634661	128504002	58	1142										
ELMO1	9844	bcgsc.ca	37	chr7	37272769	37272769	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0364963503649635	5	1	0.735915155005279	2.03112582781457	0.376134412558254	1	1	0	tccatcagctcaacgaaggcCgtcagggtgaaggacagcat	12	11	3	1	rs35387639	byfrequency	TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	ELMO1-96	NM_014800	exon8	c.G480A	p.T160T	GAAGGCCGTCAGG	.	128	5	95	0	C|0.964;T|0.036	1	1	0	0	0	T	37272769	C	T	37272769	2	4	6	1	0	0	0	0	0	0	0	1	5078	639	23	1		1	ELMO1	7	37272769	Silent	SNP	C	TCGA-OR-A5J6-01A-31D-A29I-10	6638108	37272769	121865894	59	1143										
LRRN3	54674	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	110764308	110764308	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0364963503649635	5	1	0.735915155005279	2.03112582781457	0.376134412558254	1	1	0	ctcccaaagaagggggtttaTatacttgtatagcaactaac	8	8	0	1	novel		TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	LRRN3-154	NM_018334	exon2	c.T1480C	p.Y494H	GGTTTATATACTT	.	196	35	162	0	.	1	1	0	0	0	C	110764308	T	C	110764308	3	2	6	1	0	0	0	0	1	0	0	0	9063	1406	49	4	1482	4	LRRN3	7	110764308	Missense_Mutation	SNP	T	TCGA-OR-A5J6-01A-31D-A29I-10	73491539	110764308	48374355	60	1144										
CAPZA2	830	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	116557779	116557779	+	Splice_Site	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0364963503649635	5	1	0.735915155005279	2.03112582781457	0.376134412558254	1	1	0	ttctaactattgtttttcatAgactgccatcagtgagaatt	6	7	3	2	novel		TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	CAPZA2-514	NM_006136	exon10	c.721-2A>G	.	TTTCATAGACTGC	.	116	26	75	0	.	0	0	0	0	0	G	116557779	A	G	116557779	5	3	6	1	0	0	0	0	0	0	1	0	2647	434	15	4	757	4	CAPZA2	7	116557779	Splice_Site	SNP	A	TCGA-OR-A5J6-01A-31D-A29I-10	5793471	116557779	42580884	61	1145										
RP1L1	94137	hgsc.bcm.edu	37	chr8	10470130	10470130	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0364963503649635	5	1	0.735915155005279	2.03112582781457	0.376134412558254	1	1	0	ccaggctccctccagctttcCgctcagcccctatctgggca	8	19	2	0	rs79401306		TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	RP1L1-139	NM_178857	exon4	c.G1478A	p.R493Q	GCTTTCCGCTCAG	.	9	5	0	0	C|0.987;T|0.013	0	0	0	0	0	T	10470130	C	T	10470130	3	4	6	1	0	0	0	0	1	0	0	0	13568	652	23	1	5728	1	RP1L1	8	10470130	Missense_Mutation	SNP	C	TCGA-OR-A5J6-01A-31D-A29I-10		10470130	135893892	62	1146										
RP1L1	94137	hgsc.bcm.edu	37	chr8	10470764	10470764	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0364963503649635	5	1	0.735915155005279	2.03112582781457	0.376134412558254	1	1	0	agcagggcccaccggggggtTgctaggaccaggcctttctg	16	12	1	0	rs75814156		TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	RP1L1-139	NM_178857	exon4	c.A844C	p.N282H	GGGGGTTGCTAGG	.	53	29	2	0	T|0.984;G|0.016	0	0	0	0	0	G	10470764	T	G	10470764	3	3	6	1	0	0	0	0	1	0	0	0	13568	1812	63	5	6362	5	RP1L1	8	10470764	Missense_Mutation	SNP	T	TCGA-OR-A5J6-01A-31D-A29I-10	634	10470764	135893258	63	1147										
SLC25A37	51312	bcgsc.ca	37	chr8	23423669	23423669	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0364963503649635	5	1	0.735915155005279	2.03112582781457	0.376134412558254	1	1	0	ccaaagcccagtacacaagtAtctacggagccctcaagaaa	7	13	2	1	rs2942194	byfrequency	TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	SLC25A37-90	NM_016612	exon2	c.A259G	p.I87V	ACAAGTATCTACG	.	99	5	68	0	A|0.818;G|0.182	13	13	0	0	0	G	23423669	A	G	23423669	3	3	6	1	0	0	0	0	1	0	0	0	14536	449	16	4	265	4	SLC25A37	8	23423669	Missense_Mutation	SNP	A	TCGA-OR-A5J6-01A-31D-A29I-10	12952905	23423669	122940353	64	1148										
ASPH	444	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	62596612	62596612	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0364963503649635	5	1	0.735915155005279	2.03112582781457	0.376134412558254	1	1	0	tcttacctagaacttcctcaTagtcaacaagatcaaaccaa	3	12	4	2	novel		TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	ASPH-93	NM_001164754	exon2	c.A239G	p.Y80C	TCCTCATAGTCAA	.	54	10	37	0	.	35	27	8	0	0	C	62596612	T	C	62596612	3	2	6	1	0	0	0	0	1	0	0	0	1054	1406	49	4	2849	4	ASPH	8	62596612	Missense_Mutation	SNP	T	TCGA-OR-A5J6-01A-31D-A29I-10	39172943	62596612	83767410	65	1149										
CNBD1	168975	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr8	87917323	87917323	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0364963503649635	5	1	0.735915155005279	2.03112582781457	0.376134412558254	1	1	0	tttaagccggagtatgagcaAtatcttatcagctcacgata	8	8	3	1	novel		TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	CNBD1-3	NM_173538	exon3	c.A173G	p.N58S	TGAGCAATATCTT	.	69	17	68	0	.	0	0	0	0	0	G	87917323	A	G	87917323	3	3	6	1	0	0	0	0	1	0	0	0	3597	101	4	4	183	4	CNBD1	8	87917323	Missense_Mutation	SNP	A	TCGA-OR-A5J6-01A-31D-A29I-10	25320711	87917323	58446699	66	1150										
ZNF696	79943	hgsc.bcm.edu	37	chr8	144378731	144378731	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0364963503649635	5	1	0.735915155005279	2.03112582781457	0.376134412558254	1	1	0	gggagcggcccttcgcctgcCaggactgcggccgcgccttc	15	17	0	0	novel		TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	ZNF696-90	NM_030895	exon3	c.C886G	p.Q296E	GCCTGCCAGGACT	.	12	6	0	0	.	6	4	2	0	0	G	144378731	C	G	144378731	3	3	6	1	0	0	0	0	1	0	0	0	18136	595	21	3	892	3	ZNF696	8	144378731	Missense_Mutation	SNP	C	TCGA-OR-A5J6-01A-31D-A29I-10	56461408	144378731	1985291	67	1151										
EPPK1	83481	hgsc.bcm.edu;broad.mit.edu	37	chr8	144940427	144940427	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0364963503649635	5	1	0.735915155005279	2.03112582781457	0.376134412558254	1	1	0	gcaggcggatgccgtgctccCggacgatgaggtccttctgc	15	13	1	1	novel		TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	EPPK1-25	NM_031308	exon1	c.G6995A	p.R2332Q	TGCTCCCGGACGA	.	202	17	32	0	.	0	0	0	0	0	T	144940427	C	T	144940427	3	4	6	1	0	0	0	0	1	0	0	0	5203	652	23	1	271	1	EPPK1	8	144940427	Missense_Mutation	SNP	C	TCGA-OR-A5J6-01A-31D-A29I-10	561696	144940427	1423595	68	1152										
EPPK1	83481	hgsc.bcm.edu	37	chr8	144946602	144946602	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0364963503649635	5	1	0.735915155005279	2.03112582781457	0.376134412558254	1	1	0	gtagcgccgcacctcggcacGtgcactcacgtccactgcgg	12	17	1	0	rs147805507		TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	EPPK1-25	NM_031308	exon1	c.C820T	p.R274C	CGGCACGTGCACT	.	55	37	1	0	G|0.995;A|0.005	0	0	0	0	0	A	144946602	G	A	144946602	3	1	6	1	0	0	0	0	1	0	0	0	5203	1145	40	1	6446	1	EPPK1	8	144946602	Missense_Mutation	SNP	G	TCGA-OR-A5J6-01A-31D-A29I-10	6175	144946602	1417420	69	1153										
PLEC	5339	hgsc.bcm.edu	37	chr8	144997023	144997023	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0364963503649635	5	1	0.735915155005279	2.03112582781457	0.376134412558254	1	1	0	tggaagccctgcgtctcctcCgccagctgctgcgccatctg	11	17	2	0	rs146381488	by1000genomes	TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	PLEC-141	NM_201380	exon31	c.G7485A	p.A2495A	CTCCTCCGCCAGC	.	32	17	1	0	C|0.998;T|0.002	5	1	4	0	0	T	144997023	C	T	144997023	2	4	6	1	0	0	0	0	0	0	0	1	12081	639	23	1		1	PLEC	8	144997023	Silent	SNP	C	TCGA-OR-A5J6-01A-31D-A29I-10	50421	144997023	1366999	70	1154										
PGM5	5239	hgsc.bcm.edu	37	chr9	70972109	70972109	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0364963503649635	5	1	0.735915155005279	2.03112582781457	0.376134412558254	1	1	0	tacgaggaccagcggccggcCggcggcgggggtctgcggcg	21	13	1	0	rs79088300	byfrequency;by1000genomes	TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	PGM5-92	NM_021965	exon1	c.C66T	p.A22A	GCCGGCCGGCGGC	.	10	7	0	0	C|0.936;T|0.064	11	5	6	0	0	T	70972109	C	T	70972109	2	4	6	1	0	0	0	0	0	0	0	1	11830	639	23	1		1	PGM5	9	70972109	Silent	SNP	C	TCGA-OR-A5J6-01A-31D-A29I-10		70972109	70241322	71	1155										
TNC	3371	bcgsc.ca	37	chr9	117797597	117797597	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0364963503649635	5	1	0.735915155005279	2.03112582781457	0.376134412558254	1	1	0	acctcagtagcagtcaagtcTcttggagaatcgaggtctgg	12	9	4	1	rs12347433	byfrequency	TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	TNC-517	NM_002160	exon22	c.A5673G	p.R1891R	CAAGTCTCTTGGA	.	89	7	87	0	T|0.813;C|0.187	0	0	0	0	0	C	117797597	T	C	117797597	2	2	6	1	0	0	0	0	0	0	0	1	16307	1548	54	4		4	TNC	9	117797597	Silent	SNP	T	TCGA-OR-A5J6-01A-31D-A29I-10	46825488	117797597	23415834	72	1156										
GOLGA1	2800	broad.mit.edu	37	chr9	127693630	127693630	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0364963503649635	5	1	0.735915155005279	2.03112582781457	0.376134412558254	1	1	0	ctaacttccgtatctgttcaTtccttctcagaagctgggat	7	11	3	1	rs148050398	byfrequency	TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	GOLGA1-91	NM_002077	exon4	c.A191G	p.N64S	TGTTCATTCCTTC	.	98	3	82	1	T|0.999;C|0.001	6	6	0	0	0	C	127693630	T	C	127693630	3	2	6	1	0	0	0	0	1	0	0	0	6571	1493	52	4	2192	4	GOLGA1	9	127693630	Missense_Mutation	SNP	T	TCGA-OR-A5J6-01A-31D-A29I-10	9896033	127693630	13519801	73	1157										
C9orf171	389799	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr9	135447854	135447854	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0364963503649635	5	1	0.735915155005279	2.03112582781457	0.376134412558254	1	1	0	ccaccgggaagagtgtgccgTgcgccaggggaccctgcgga	17	13	0	1	novel		TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	C9orf171-157	NM_207417	exon7	c.T920C	p.V307A	GTGCCGTGCGCCA	.	43	15	33	0	.	0	0	0	0	0	C	135447854	T	C	135447854	3	2	6	1	0	0	0	0	1	0	0	0	2476	1696	59	4	946	4	C9orf171	9	135447854	Missense_Mutation	SNP	T	TCGA-OR-A5J6-01A-31D-A29I-10	7754224	135447854	5765577	74	1158										
EXD3	54932	hgsc.bcm.edu	37	chr9	140243589	140243589	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0364963503649635	5	1	0.735915155005279	2.03112582781457	0.376134412558254	1	1	0	ggtgcggccggtgctgacgcTttctgcaggccgggtggctt	18	11	1	1	rs114716688	byfrequency	TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	EXD3-90	NM_017820	exon16	c.A1803G	p.K601K	TGACGCTTTCTGC	.	45	26	0	0	T|0.979;C|0.021	5	1	4	0	0	C	140243589	T	C	140243589	2	2	6	1	0	0	0	0	0	0	0	1	5312	1606	56	4		4	EXD3	9	140243589	Silent	SNP	T	TCGA-OR-A5J6-01A-31D-A29I-10	4795735	140243589	969842	75	1159										
GATA3	2625	hgsc.bcm.edu	37	chr10	8100397	8100398	+	In_Frame_Ins	INS	-	-	CGG													0.0364963503649635	5	1	0.735915155005279	2.03112582781457	0.376134412558254	1	1	0	tccaagacgtccatccaccaINScggctccccggggcccctct					novel		TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	GATA3-1004	NM_002051	exon3	c.371_372insCGG	p.H124delinsHG	TCCACCACGGCTC	.	54	15	4	1	.	0	0	0	0	0	CGG	8100398	-	CGG	8100397	7	5	6	1	0	1	1	0	0	0	0	0	6275	159	6	0	377	0	GATA3	10	8100397	In_Frame_Ins	INS	-	TCGA-OR-A5J6-01A-31D-A29I-10		8100397	127434350	76	1160										
PCDH15	65217	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	55582281	55582281	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0364963503649635	5	1	0.735915155005279	2.03112582781457	0.376134412558254	1	1	0	ggagagatgtttggtggatgGgcaaaattttcaaaaatatt	12	2	1	1	novel		TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	PCDH15-193	NM_001142763	exon35	c.C5226T	p.A1742A	TGGATGGGCAAAA	.	45	10	49	0	.	0	0	0	0	0	A	55582281	G	A	55582281	2	1	6	1	0	0	0	0	0	0	0	1	11540	1219	43	3		3	PCDH15	10	55582281	Silent	SNP	G	TCGA-OR-A5J6-01A-31D-A29I-10	47481884	55582281	79952466	77	1161										
WDR11	55717	broad.mit.edu;ucsc.edu	37	chr10	122643301	122643301	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0364963503649635	5	1	0.735915155005279	2.03112582781457	0.376134412558254	1	1	0	gtttattttaggcagtatttGgcagtcgtattcagagataa	10	4	1	1	novel		TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	WDR11-226	NM_018117	exon14	c.G1749T	p.L583F	GTATTTGGCAGTC	.	47	4	52	0	.	0	0	0	0	0	T	122643301	G	T	122643301	3	4	6	1	0	0	0	0	1	0	0	0	17311	1339	47	3	1803	3	WDR11	10	122643301	Missense_Mutation	SNP	G	TCGA-OR-A5J6-01A-31D-A29I-10	67061020	122643301	12891446	78	1162										
FGFR2	2263	broad.mit.edu	37	chr10	123239112	123239112	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0364963503649635	5	1	0.735915155005279	2.03112582781457	0.376134412558254	1	1	0	gtcctactggtccacagccaGtacgcacggcaggtgagagg	14	12	0	1	rs1047057	byfrequency	TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	FGFR2-2607	NM_001144915	exon17	c.C2107T	p.L703L	CAGCCAGTACGCA	.	103	3	92	0	G|0.609;A|0.391	4	4	0	0	0	A	123239112	G	A	123239112	2	1	6	1	0	0	0	0	0	0	0	1	5885	1020	36	3		3	FGFR2	10	123239112	Silent	SNP	G	TCGA-OR-A5J6-01A-31D-A29I-10	595811	123239112	12295635	79	1163										
PTPRE	5791	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr10	129839226	129839226	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0364963503649635	5	1	0.735915155005279	2.03112582781457	0.376134412558254	1	1	0	aggggcaacgagaccactgcCgacagcaacgagacaaccac	11	14	0	2	novel		TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	PTPRE-227	NM_006504	exon3	c.C81T	p.A27A	CACTGCCGACAGC	.	168	9	183	0	.	0	0	0	0	0	T	129839226	C	T	129839226	2	4	6	1	0	0	0	0	0	0	0	1	12835	639	23	1		1	PTPRE	10	129839226	Silent	SNP	C	TCGA-OR-A5J6-01A-31D-A29I-10	6600114	129839226	5695521	80	1164										
CTSD	1509	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr11	1778638	1778638	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0364963503649635	5	1	0.735915155005279	2.03112582781457	0.376134412558254	1	1	0	cgggcagcacgttgttgacgGagatgcgggggtaggccatg	19	8	0	2	novel		TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	CTSD-90	NM_001909	exon5	c.C620T	p.S207F	TTGACGGAGATGC	.	251	25	146	0	.	1982	1770	210	0	2	A	1778638	G	A	1778638	3	1	6	1	0	0	0	0	1	0	0	0	4038	1174	41	3	638	3	CTSD	11	1778638	Missense_Mutation	SNP	G	TCGA-OR-A5J6-01A-31D-A29I-10		1778638	133227878	81	1165										
OR56B1	387748	bcgsc.ca	37	chr11	5758051	5758051	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0364963503649635	5	1	0.735915155005279	2.03112582781457	0.376134412558254	1	1	0	gtttgatgccaaggttattaGcctccctgagtgctttgctc	10	10	0	2	rs75758940	byfrequency	TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	OR56B1-69	NM_001005180	exon1	c.G305A	p.S102N	TTATTAGCCTCCC	.	127	7	120	1	G|0.992;A|0.008	0	0	0	0	0	A	5758051	G	A	5758051	3	1	6	1	0	0	0	0	1	0	0	0	11166	971	34	3	307	3	OR56B1	11	5758051	Missense_Mutation	SNP	G	TCGA-OR-A5J6-01A-31D-A29I-10	3979413	5758051	129248465	82	1166										
WT1	7490	hgsc.bcm.edu	37	chr11	32456694	32456694	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0364963503649635	5	1	0.735915155005279	2.03112582781457	0.376134412558254	1	1	0	acgtcggagcccatttgctgCggctcagacccggacgcccc	12	17	1	1	rs2234582	byfrequency	TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	WT1-6891	NM_024424	exon1	c.G198T	p.P66P	TTGCTGCGGCTCA	.	6	6	0	0	C|0.748;A|0.252	0	0	0	0	0	A	32456694	C	A	32456694	2	1	6	1	0	0	0	0	0	0	0	1	17446	755	27	2		2	WT1	11	32456694	Silent	SNP	C	TCGA-OR-A5J6-01A-31D-A29I-10	26698643	32456694	102549822	83	1167										
AMBRA1	55626	hgsc.bcm.edu	37	chr11	46419411	46419411	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0364963503649635	5	1	0.735915155005279	2.03112582781457	0.376134412558254	1	1	0	ctctgctcccgctgcaccacGgctgtcatgccgccctccgc	9	21	2	0	rs12295608	byfrequency	TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	AMBRA1-136	NM_001267782	exon20	c.C3495T	p.A1165A	CACCACGGCTGTC	.	25	5	1	0	G|0.923;A|0.077	47	37	10	0	0	A	46419411	G	A	46419411	2	1	6	1	0	0	0	0	0	0	0	1	565	1103	39	1		1	AMBRA1	11	46419411	Silent	SNP	G	TCGA-OR-A5J6-01A-31D-A29I-10	13962717	46419411	88587105	84	1168										
OR8H2	390151	broad.mit.edu	37	chr11	55873285	55873285	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0364963503649635	5	1	0.735915155005279	2.03112582781457	0.376134412558254	1	1	0	catcttttatagcactctgaTttttacttatttaaaaccaa	2	8	2	1	novel		TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	OR8H2-70	NM_001005200	exon1	c.T767C	p.I256T	CTCTGATTTTTAC	.	78	3	77	0	.	0	0	0	0	0	C	55873285	T	C	55873285	3	2	6	1	0	0	0	0	1	0	0	0	11267	1493	52	4	769	4	OR8H2	11	55873285	Missense_Mutation	SNP	T	TCGA-OR-A5J6-01A-31D-A29I-10	9453874	55873285	79133231	85	1169										
TMEM223	79064	hgsc.bcm.edu	37	chr11	62559437	62559437	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0364963503649635	5	1	0.735915155005279	2.03112582781457	0.376134412558254	1	1	0	cgcagcacggctagcagcccCgtgggccatcgcctccaagg	13	17	0	0	novel		TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	.	NM_001080501	exon1	c.G30C	p.T10T	CAGCCCCGTGGGC	.	16	9	1	0	.	29	10	19	0	0	G	62559437	C	G	62559437	2	3	6	1	0	0	0	0	0	0	0	1	16183	639	23	2		2	TMEM223	11	62559437	Silent	SNP	C	TCGA-OR-A5J6-01A-31D-A29I-10	6686152	62559437	72447079	86	1170										
PPP2R1B	5519	broad.mit.edu;bcgsc.ca	37	chr11	111626120	111626120	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0364963503649635	5	1	0.735915155005279	2.03112582781457	0.376134412558254	1	1	0	agtctcaaggtcatcctgagAcaataactgggcaatactga	9	9	2	2	novel		TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	PPP2R1B-658	NM_001177562	exon6	c.T742C	p.S248P	CCTGAGACAATAA	.	124	5	71	0	.	9	8	1	0	0	G	111626120	A	G	111626120	3	3	6	1	0	0	0	0	1	0	0	0	12415	275	10	4	1326	4	PPP2R1B	11	111626120	Missense_Mutation	SNP	A	TCGA-OR-A5J6-01A-31D-A29I-10	49066683	111626120	23380396	87	1171										
EFCAB4B	84766	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	3805999	3805999	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0364963503649635	5	1	0.735915155005279	2.03112582781457	0.376134412558254	1	1	0	cacaggtctgaaagaactccTgtgccttcctcagcatgact	8	13	2	3	novel		TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	EFCAB4B-92	NM_001144958	exon4	c.A167T	p.Q56L	AACTCCTGTGCCT	.	138	33	103	0	.	0	0	0	0	0	A	3805999	T	A	3805999	3	1	6	1	0	0	0	0	1	0	0	0	4948	1580	55	5	2288	5	EFCAB4B	12	3805999	Missense_Mutation	SNP	T	TCGA-OR-A5J6-01A-31D-A29I-10		3805999	130045896	88	1172										
C1RL	51279	broad.mit.edu;bcgsc.ca	37	chr12	7260847	7260847	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0364963503649635	5	1	0.735915155005279	2.03112582781457	0.376134412558254	1	1	0	cccccccatccccagctcacTgtgacagagtcccctgcaca	6	21	1	2	novel		TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	C1RL-91	NM_016546	exon2	c.A300G	p.T100T	GCTCACTGTGACA	.	70	5	48	1	.	4	4	0	0	0	C	7260847	T	C	7260847	2	2	6	1	0	0	0	0	0	0	0	1	1979	1594	55	4		4	C1RL	12	7260847	Silent	SNP	T	TCGA-OR-A5J6-01A-31D-A29I-10	3454848	7260847	126591048	89	1173										
CLEC4E	26253	bcgsc.ca	37	chr12	8691875	8691875	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0364963503649635	5	1	0.735915155005279	2.03112582781457	0.376134412558254	1	1	0	gtagctgaaactttttctcaTcacaggtttgaaagatgcga	9	7	2	3	rs79940141	byfrequency	TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	CLEC4E-90	NM_014358	exon3	c.A158G	p.D53G	TTCTCATCACAGG	.	154	7	106	0	T|0.991;C|0.009	5	5	0	0	0	C	8691875	T	C	8691875	3	2	6	1	0	0	0	0	1	0	0	0	3521	1435	50	4	517	4	CLEC4E	12	8691875	Missense_Mutation	SNP	T	TCGA-OR-A5J6-01A-31D-A29I-10	1431028	8691875	125160020	90	1174										
BCAT1	586	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr12	24989464	24989464	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0364963503649635	5	1	0.735915155005279	2.03112582781457	0.376134412558254	1	1	0	cccactgatgtgccaggtccAgaatgcaccgccttgtcact	9	15	1	2	novel		TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	BCAT1-522	NM_001178093	exon8	c.T920C	p.L307P	AGGTCCAGAATGC	.	88	15	66	0	.	2	2	0	0	0	G	24989464	A	G	24989464	3	3	6	1	0	0	0	0	1	0	0	0	1355	188	7	4	292	4	BCAT1	12	24989464	Missense_Mutation	SNP	A	TCGA-OR-A5J6-01A-31D-A29I-10	16297589	24989464	108862431	91	1175										
KRT6B	3854	bcgsc.ca	37	chr12	52841765	52841765	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0364963503649635	5	1	0.735915155005279	2.03112582781457	0.376134412558254	1	1	0	tgctcagcatcagcaatggcGgcctgtaggttggcacacta	12	11	2	0	rs388626	byfrequency	TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	KRT6B-92	NM_005555	exon7	c.C1221T	p.A407A	AATGGCGGCCTGT	.	257	8	179	2	G|0.488;A|0.512	0	0	0	0	0	A	52841765	G	A	52841765	2	1	6	1	0	0	0	0	0	0	0	1	8502	1103	39	1		1	KRT6B	12	52841765	Silent	SNP	G	TCGA-OR-A5J6-01A-31D-A29I-10	27852301	52841765	81010130	92	1176										
GTSF1	121355	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	54854183	54854183	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0364963503649635	5	1	0.735915155005279	2.03112582781457	0.376134412558254	1	1	0	tttttccatggcagaacataCggcagagatttgggaactcg	11	8	0	2	rs148431190	alternate_allele	TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	GTSF1-90	NM_144594	exon7	c.G465T	p.P155P	AACATACGGCAGA	.	146	29	83	0	C|1.000;T|0.000	0	0	0	0	0	A	54854183	C	A	54854183	2	1	6	1	0	0	0	0	0	0	0	1	6907	523	19	2		2	GTSF1	12	54854183	Silent	SNP	C	TCGA-OR-A5J6-01A-31D-A29I-10	2012418	54854183	78997712	93	1177										
NAP1L1	4673	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	76447086	76447086	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0364963503649635	5	1	0.735915155005279	2.03112582781457	0.376134412558254	1	1	0	gtttctgcttcttcttaataGttttcaaagtgacattcttt	5	7	5	1	novel		TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	NAP1L1-92	NM_004537	exon10	c.C815G	p.T272S	TTAATAGTTTTCA	.	189	11	135	0	.	486	428	58	0	0	C	76447086	G	C	76447086	3	2	6	1	0	0	0	0	1	0	0	0	10184	1029	36	3	384	3	NAP1L1	12	76447086	Missense_Mutation	SNP	G	TCGA-OR-A5J6-01A-31D-A29I-10	21592903	76447086	57404809	94	1178										
CEP290	80184	ucsc.edu;bcgsc.ca	37	chr12	88478595	88478595	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0364963503649635	5	1	0.735915155005279	2.03112582781457	0.376134412558254	1	1	0	ttgacagtatattttgttctGctaaccttaaagcagattct	6	7	2	2	novel		TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	CEP290-96	NM_025114	exon35	c.C4472A	p.A1491E	TGTTCTGCTAACC	.	21	4	25	0	.	1	1	0	0	0	T	88478595	G	T	88478595	3	4	6	1	0	0	0	0	1	0	0	0	3259	1319	46	3	3047	3	CEP290	12	88478595	Missense_Mutation	SNP	G	TCGA-OR-A5J6-01A-31D-A29I-10	12031509	88478595	45373300	95	1179										
RPH3A	22895	ucsc.edu;bcgsc.ca	37	chr12	113285539	113285539	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0364963503649635	5	1	0.735915155005279	2.03112582781457	0.376134412558254	1	1	0	cgtccaccccggtggtcagcCtgacaggcagaggaagcagg	15	13	1	2	novel		TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	RPH3A-519	NM_001143854	exon5	c.C122A	p.P41H	GTCAGCCTGACAG	.	328	49	245	2	.	0	0	0	0	0	A	113285539	C	A	113285539	3	1	6	1	0	0	0	0	1	0	0	0	13586	681	24	3	132	3	RPH3A	12	113285539	Missense_Mutation	SNP	C	TCGA-OR-A5J6-01A-31D-A29I-10	24806944	113285539	20566356	96	1180										
PITPNM2	57605	hgsc.bcm.edu	37	chr12	123480124	123480132	+	In_Frame_Del	DEL	GCCACCACC	GCCACCACC	-													0.0364963503649635	5	1	0.735915155005279	2.03112582781457	0.376134412558254	1	1	0	ctgccaccaccaccactgctGccaccaccgccaccgccgcc					novel		TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	GCCACCACC	GCCACCACC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	PITPNM2-228	NM_020845	exon13	c.1858_1866del	p.620_622del	ACTGCTGCCACCA	.	86	32	6	0	.	0	0	0	0	0	-	123480132	GCCACCACC	-	123480124	7	5	6	1	0	1	0	1	0	0	0	0	11980	1306	46	0	2235	0	PITPNM2	12	123480124	In_Frame_Del	DEL	GCCACCACC	TCGA-OR-A5J6-01A-31D-A29I-10	10194585	123480124	10371771	97	1181										
OXGR1	27199	bcgsc.ca	37	chr13	97639827	97639827	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0364963503649635	5	1	0.735915155005279	2.03112582781457	0.376134412558254	1	1	0	ggtgctgctcttccaaggtcTcattttgaaaatgtaagtgg	11	7	2	1	rs9300380	byfrequency	TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	OXGR1-70	NM_080818	exon4	c.A187C	p.R63R	AAGGTCTCATTTT	.	182	8	185	0	T|0.939;G|0.061	0	0	0	0	0	G	97639827	T	G	97639827	2	3	6	1	0	0	0	0	0	0	0	1	11361	1559	54	5		5	OXGR1	13	97639827	Silent	SNP	T	TCGA-OR-A5J6-01A-31D-A29I-10		97639827	17530051	98	1182										
CARS2	79587	ucsc.edu	37	chr13	111340101	111340101	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0364963503649635	5	1	0.735915155005279	2.03112582781457	0.376134412558254	1	1	0	ataagcgttcccacgagcaaTgattccttcaatgaaagaaa	7	9	1	3	rs72661692	byfrequency;alternate_allele	TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	CARS2-90	NM_024537	exon5	c.A538G	p.I180V	GAGCAATGATTCC	.	84	13	75	1	T|0.929;A|0.071	48	36	12	0	0	C	111340101	T	C	111340101	3	2	6	1	0	0	0	0	1	0	0	0	2664	1464	51	4	1200	4	CARS2	13	111340101	Missense_Mutation	SNP	T	TCGA-OR-A5J6-01A-31D-A29I-10	13700274	111340101	3829777	99	1183										
C14orf39	317761	bcgsc.ca	37	chr14	60903757	60903757	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0364963503649635	5	1	0.735915155005279	2.03112582781457	0.376134412558254	1	1	0	ttctccttctggcttctcaaGtaagtttcctaaggaagata	7	9	3	1	rs1254319	byfrequency	TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	C14orf39-94	NM_174978	exon18	c.C1570T	p.L524F	TCTCAAGTAAGTT	.	78	7	108	0	G|0.588;A|0.412	0	0	0	0	0	A	60903757	G	A	60903757	3	1	6	1	0	0	0	0	1	0	0	0	1776	1029	36	3	197	3	C14orf39	14	60903757	Missense_Mutation	SNP	G	TCGA-OR-A5J6-01A-31D-A29I-10		60903757	46445783	100	1184										
AHNAK2	113146	broad.mit.edu	37	chr14	105412335	105412335	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0364963503649635	5	1	0.735915155005279	2.03112582781457	0.376134412558254	1	1	0	ggggcagacaccccgaacgaCggcatcttgaacttgggcat	13	12	1	2	rs202104959	byfrequency	TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	AHNAK2-47	NM_138420	exon7	c.G9453A	p.P3151P	GAACGACGGCATC	.	59	9	139	0	C|0.963;T|0.037	0	0	0	0	0	T	105412335	C	T	105412335	2	4	6	1	0	0	0	0	0	0	0	1	415	523	19	1		1	AHNAK2	14	105412335	Silent	SNP	C	TCGA-OR-A5J6-01A-31D-A29I-10	44508578	105412335	1937205	101	1185										
AHNAK2	113146	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr14	105417098	105417098	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0364963503649635	5	1	0.735915155005279	2.03112582781457	0.376134412558254	1	1	0	ggctccctcggacacagggcCctctgggagtttcacgtcca	12	15	2	0	novel		TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	AHNAK2-47	NM_138420	exon7	c.G4690A	p.G1564S	CAGGGCCCTCTGG	.	159	48	157	0	.	0	0	0	0	0	T	105417098	C	T	105417098	3	4	6	1	0	0	0	0	1	0	0	0	415	623	22	3	12701	3	AHNAK2	14	105417098	Missense_Mutation	SNP	C	TCGA-OR-A5J6-01A-31D-A29I-10	4763	105417098	1932442	102	1186										
GABRG3	2567	hgsc.bcm.edu	37	chr15	27216691	27216691	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0364963503649635	5	1	0.735915155005279	2.03112582781457	0.376134412558254	1	1	0	ctccacggcaccatggccccGaagctgctgctcctcctctg	9	19	1	0	rs28399525	byfrequency	TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	.	NM_001270873	exon1	c.G9A	p.P3P	GGCCCCGAAGCTG	.	9	5	0	0	G|0.972;A|0.028	0	0	0	0	0	A	27216691	G	A	27216691	2	1	6	1	0	0	0	0	0	0	0	1	6192	1045	37	1		1	GABRG3	15	27216691	Silent	SNP	G	TCGA-OR-A5J6-01A-31D-A29I-10		27216691	75314701	103	1187										
FAM81A	145773	bcgsc.ca	37	chr15	59806609	59806609	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0364963503649635	5	1	0.735915155005279	2.03112582781457	0.376134412558254	1	1	0	ttgatcagctttccttgattGttaaggaaaacagtgtaggt	10	5	1	2	novel		TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	FAM81A-91	NM_152450	exon7	c.G772T	p.V258F	TTGATTGTTAAGG	.	65	6	52	0	.	0	0	0	0	0	T	59806609	G	T	59806609	3	4	6	1	0	0	0	0	1	0	0	0	5647	1377	48	3	794	3	FAM81A	15	59806609	Missense_Mutation	SNP	G	TCGA-OR-A5J6-01A-31D-A29I-10	32589918	59806609	42724783	104	1188										
LACTB	114294	hgsc.bcm.edu	37	chr15	63414083	63414083	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0364963503649635	5	1	0.735915155005279	2.03112582781457	0.376134412558254	1	1	0	gagacgccatgtaccggctcAtgtcagcagtgactgcccgg	13	13	2	2	rs34317102	byfrequency	TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	LACTB-90	NM_171846	exon1	c.A13C	p.M5L	CGGCTCATGTCAG	.	6	6	0	0	A|0.226;C|0.774	0	0	0	0	0	C	63414083	A	C	63414083	3	2	6	1	0	0	0	0	1	0	0	0	8619	217	8	5	15	5	LACTB	15	63414083	Missense_Mutation	SNP	A	TCGA-OR-A5J6-01A-31D-A29I-10	3607474	63414083	39117309	105	1189										
MCTP2	55784	bcgsc.ca	37	chr15	94945719	94945719	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0364963503649635	5	1	0.735915155005279	2.03112582781457	0.376134412558254	1	1	0	ttgcaatttcattcagcaccGcaaagaggaaccacccctgt	7	13	2	1	rs7178698	byfrequency	TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	MCTP2-93	NM_001159644	exon10	c.G854T	p.R285L	AGCACCGCAAAGA	.	135	5	124	0	G|0.358;T|0.642	0	0	0	0	0	T	94945719	G	T	94945719	3	4	6	1	0	0	0	0	1	0	0	0	9429	1087	38	2	2156	2	MCTP2	15	94945719	Missense_Mutation	SNP	G	TCGA-OR-A5J6-01A-31D-A29I-10	31531636	94945719	7585673	106	1190										
HBQ1	3049	hgsc.bcm.edu	37	chr16	230817	230817	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0364963503649635	5	1	0.735915155005279	2.03112582781457	0.376134412558254	1	1	0	cctaccccacgcgctgtccgCgctgagccacctgcacgcgt	10	20	0	1	rs80294025	byfrequency	TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	HBQ1-90	NM_005331	exon2	c.C248T	p.A83V	TGTCCGCGCTGAG	.	7	5	0	0	C|0.988;T|0.012	0	0	0	0	0	T	230817	C	T	230817	3	4	6	1	0	0	0	0	1	0	0	0	7007	768	27	1	254	1	HBQ1	16	230817	Missense_Mutation	SNP	C	TCGA-OR-A5J6-01A-31D-A29I-10		230817	90123936	107	1191										
TMC7	79905	bcgsc.ca	37	chr16	19067933	19067933	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0364963503649635	5	1	0.735915155005279	2.03112582781457	0.376134412558254	1	1	0	tgggaggtcatccccaagacGgtgagcaccttccccagctc	11	15	1	2	rs17854511	byfrequency	TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	TMC7-93	NM_024847	exon14	c.G1941A	p.T647T	CAAGACGGTGAGC	.	288	10	272	2	G|0.511;A|0.489	0	0	0	0	0	A	19067933	G	A	19067933	2	1	6	1	0	0	0	0	0	0	0	1	16027	1103	39	1		1	TMC7	16	19067933	Silent	SNP	G	TCGA-OR-A5J6-01A-31D-A29I-10	18837116	19067933	71286820	108	1192										
SALL1	6299	hgsc.bcm.edu	37	chr16	51175655	51175656	+	In_Frame_Ins	INS	-	-	GCTGCT													0.0364963503649635	5	1	0.735915155005279	2.03112582781457	0.376134412558254	1	1	0	gaggagctgccgccgccgccINSgctgctgctgctgctgctgc					rs113614842	byfrequency	TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	SALL1-98	NM_002968	exon2	c.478_479insAGCAGC	p.G160delinsSSG	CGCCGCCGCTGCT	.	94	18	35	0	-|0.500;GCC|0.250;GCT|0.250	0	0	0	0	0	GCTGCT	51175656	-	GCTGCT	51175655	7	5	6	1	0	1	1	0	0	0	0	0	13845	652	23	0	3504	0	SALL1	16	51175655	In_Frame_Ins	INS	-	TCGA-OR-A5J6-01A-31D-A29I-10	32107722	51175655	39179098	109	1193										
PKD1L2	114780	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr16	81232405	81232405	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0364963503649635	5	1	0.735915155005279	2.03112582781457	0.376134412558254	1	1	0	agccaatgagatggtgatcaAtaggtcctgtccaagctcca	10	10	1	2	novel		TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	PKD1L2-92	NM_001076780	exon7	c.T1405C	p.L469L	TGATCAATAGGTC	.	174	50	147	0	.	0	0	0	0	0	G	81232405	A	G	81232405	2	3	6	1	0	0	0	0	0	0	0	1	11994	98	4	4		4	PKD1L2	16	81232405	Silent	SNP	A	TCGA-OR-A5J6-01A-31D-A29I-10	30056750	81232405	9122348	110	1194										
C17orf97	400566	hgsc.bcm.edu	37	chr17	260182	260182	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0364963503649635	5	1	0.735915155005279	2.03112582781457	0.376134412558254	1	1	0	tccgcgctgagagtcgccgaTtagtcggcatcgggcctcgg	15	13	0	1	rs7502594		TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	C17orf97-91	NM_001013672	exon1	c.T49C	p.L17L	CGCCGATTAGTCG	.	4	4	0	0	T|0.657;C|0.343	0	0	0	0	0	C	260182	T	C	260182	2	2	6	1	0	0	0	0	0	0	0	1	1898	1490	52	4		4	C17orf97	17	260182	Silent	SNP	T	TCGA-OR-A5J6-01A-31D-A29I-10		260182	80935028	111	1195										
USP43	124739	hgsc.bcm.edu	37	chr17	9549360	9549360	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0364963503649635	5	1	0.735915155005279	2.03112582781457	0.376134412558254	1	1	0	ctggggcgctaccgggcggcTccgggccgcgccgaggtcac	18	16	1	0	rs114382285	byfrequency	TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	USP43-637	NM_001267576	exon1	c.T411G	p.A137A	GGCGGCTCCGGGC	.	8	5	2	0	T|0.919;G|0.081	0	0	0	0	0	G	9549360	T	G	9549360	2	3	6	1	0	0	0	0	0	0	0	1	17112	1538	54	5		5	USP43	17	9549360	Silent	SNP	T	TCGA-OR-A5J6-01A-31D-A29I-10	9289178	9549360	71645850	112	1196										
RNF135	84282	hgsc.bcm.edu	37	chr17	29298304	29298304	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0364963503649635	5	1	0.735915155005279	2.03112582781457	0.376134412558254	1	1	0	ggcgccgcgcagcagccgcaCctgcggaagaacacgctact	13	16	0	1	rs7225888	byfrequency	TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	RNF135-227	NM_197939	exon1	c.C213G	p.H71Q	GCCGCACCTGCGG	.	10	4	0	0	C|0.810;G|0.190	3	0	3	0	0	G	29298304	C	G	29298304	3	3	6	1	0	0	0	0	1	0	0	0	13475	506	18	3	215	3	RNF135	17	29298304	Missense_Mutation	SNP	C	TCGA-OR-A5J6-01A-31D-A29I-10	19748944	29298304	51896906	113	1197										
SOCS7	30837	broad.mit.edu	37	chr17	36508662	36508663	+	In_Frame_Ins	INS	-	-	AGC													0.0364963503649635	5	1	0.735915155005279	2.03112582781457	0.376134412558254	1	1	0	ggggcgcctgagtagaggggINSagcagcagcagcagcagcag					rs41492748		TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	SOCS7-227	NM_014598	exon1	c.535_536insAGC	p.E179delinsEQ	AGAGGGGAGCAGC	.	90	19	9	0	.	0	0	0	0	0	AGC	36508663	-	AGC	36508662	7	5	6	1	0	1	1	0	0	0	0	0	14954	1175	41	0	537	0	SOCS7	17	36508662	In_Frame_Ins	INS	-	TCGA-OR-A5J6-01A-31D-A29I-10	7210358	36508662	44686548	114	1198										
KRTAP1-1	81851	broad.mit.edu	37	chr17	39197304	39197304	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0364963503649635	5	1	0.735915155005279	2.03112582781457	0.376134412558254	1	1	0	gtctgggcggcaccacctgaTacgggtgctcacagctccac	12	15	2	1	novel		TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	.	NM_030967	exon1	c.A346G	p.I116V	ACCTGATACGGGT	.	229	8	67	0	.	0	0	0	0	0	C	39197304	T	C	39197304	3	2	6	1	0	0	0	0	1	0	0	0	8523	1406	49	4	191	4	KRTAP1-1	17	39197304	Missense_Mutation	SNP	T	TCGA-OR-A5J6-01A-31D-A29I-10	2688642	39197304	41997906	115	1199										
G6PC3	92579	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	42153148	42153148	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0364963503649635	5	1	0.735915155005279	2.03112582781457	0.376134412558254	1	1	0	gtgactcaggggctgccctgGgcctgggcattgccttgcac	15	13	1	1	rs200478425	alternate_allele	TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	G6PC3-91	NM_138387	exon6	c.G778A	p.G260S	GCCCTGGGCCTGG	.	80	18	51	0	.	139	100	39	0	0	A	42153148	G	A	42153148	3	1	6	1	0	0	0	0	1	0	0	0	6164	1232	43	3	800	3	G6PC3	17	42153148	Missense_Mutation	SNP	G	TCGA-OR-A5J6-01A-31D-A29I-10	2955844	42153148	39042062	116	1200										
EPB41L3	23136	bcgsc.ca	37	chr18	5410574	5410574	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0364963503649635	5	1	0.735915155005279	2.03112582781457	0.376134412558254	1	1	0	aaaataccaacctcagtggcAgtggtctccccgtcggctgc	10	14	2	0	rs3817466	byfrequency	TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	EPB41L3-95	NM_012307	exon14	c.T2112C	p.T704T	AGTGGCAGTGGTC	.	138	6	155	0	G|0.754;N|0.001	0	0	0	0	0	G	5410574	A	G	5410574	2	3	6	1	0	0	0	0	0	0	0	1	5167	175	7	4		4	EPB41L3	18	5410574	Silent	SNP	A	TCGA-OR-A5J6-01A-31D-A29I-10		5410574	72666674	117	1201										
ZNF521	25925	hgsc.bcm.edu;broad.mit.edu	37	chr18	22807146	22807146	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0364963503649635	5	1	0.735915155005279	2.03112582781457	0.376134412558254	1	1	0	ctcacactgactgcacttctGagtgtccttcatcttccagt	6	14	4	2	novel		TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	ZNF521-275	NM_015461	exon4	c.C736G	p.Q246E	ACTTCTGAGTGTC	.	108	6	136	0	.	1	1	0	0	0	C	22807146	G	C	22807146	3	2	6	1	0	0	0	0	1	0	0	0	18002	1299	45	3	3219	3	ZNF521	18	22807146	Missense_Mutation	SNP	G	TCGA-OR-A5J6-01A-31D-A29I-10	17396572	22807146	55270102	118	1202										
TMPRSS9	360200	hgsc.bcm.edu	37	chr19	2425145	2425145	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0364963503649635	5	1	0.735915155005279	2.03112582781457	0.376134412558254	1	1	0	acgacgtggcgctgctggagCtggcggggccggtgcgtcgc	20	12	0	0	rs77360217	byfrequency	TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	TMPRSS9-91	NM_182973	exon15	c.C2761T	p.L921L	CTGGAGCTGGCGG	.	15	12	0	0	C|0.956;T|0.044	12	7	5	0	0	T	2425145	C	T	2425145	2	4	6	1	0	0	0	0	0	0	0	1	16290	796	28	3		3	TMPRSS9	19	2425145	Silent	SNP	C	TCGA-OR-A5J6-01A-31D-A29I-10		2425145	56703838	119	1203										
PNPLA6	10908	hgsc.bcm.edu	37	chr19	7615942	7615942	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0364963503649635	5	1	0.735915155005279	2.03112582781457	0.376134412558254	1	1	0	gcggtgcgcgacacggagctGgccaagcttcccgagggcac	16	14	0	0	rs113335442		TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	PNPLA6-47	NM_001166111	exon19	c.G2160A	p.L720L	GGAGCTGGCCAAG	.	67	32	2	0	G|0.992;A|0.008	27	15	12	0	0	A	7615942	G	A	7615942	2	1	6	1	0	0	0	0	0	0	0	1	12198	1335	47	3		3	PNPLA6	19	7615942	Silent	SNP	G	TCGA-OR-A5J6-01A-31D-A29I-10	5190797	7615942	51513041	120	1204										
CD320	51293	hgsc.bcm.edu	37	chr19	8373152	8373152	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0364963503649635	5	1	0.735915155005279	2.03112582781457	0.376134412558254	1	1	0	ctgttcgccacgctccaaccTgcgccatccaaccgccgctc	7	21	0	0	rs2232775	byfrequency	TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	CD320-90	NM_001165895	exon1	c.A23G	p.Q8R	CCAACCTGCGCCA	.	11	6	0	0	T|0.852;C|0.148	39	21	17	0	1	C	8373152	T	C	8373152	3	2	6	1	0	0	0	0	1	0	0	0	3010	1580	55	4	845	4	CD320	19	8373152	Missense_Mutation	SNP	T	TCGA-OR-A5J6-01A-31D-A29I-10	757210	8373152	50755831	121	1205										
GADD45GIP1	90480	hgsc.bcm.edu	37	chr19	13067746	13067746	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0364963503649635	5	1	0.735915155005279	2.03112582781457	0.376134412558254	1	1	0	cctgcatggtcgccaggctcGggtaccattcgcgttcttcg	12	14	1	0	rs137887501	byfrequency	TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	GADD45GIP1-92	NM_052850	exon1	c.C281G	p.P94R	AGGCTCGGGTACC	.	37	19	4	0	G|0.995;C|0.005	189	77	112	0	0	C	13067746	G	C	13067746	3	2	6	1	0	0	0	0	1	0	0	0	6203	1116	39	2	395	2	GADD45GIP1	19	13067746	Missense_Mutation	SNP	G	TCGA-OR-A5J6-01A-31D-A29I-10	4694594	13067746	46061237	122	1206										
NACC1	112939	hgsc.bcm.edu	37	chr19	13246606	13246606	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0364963503649635	5	1	0.735915155005279	2.03112582781457	0.376134412558254	1	1	0	ggccagaaggaggctgggggCggcggcaatggcagccgcaa	20	10	0	1	rs113254389		TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	NACC1-90	NM_052876	exon2	c.C585T	p.G195G	TGGGGGCGGCGGC	.	56	23	4	0	C|0.978;T|0.022	15	10	5	0	0	T	13246606	C	T	13246606	2	4	6	1	0	0	0	0	0	0	0	1	10163	755	27	1		1	NACC1	19	13246606	Silent	SNP	C	TCGA-OR-A5J6-01A-31D-A29I-10	178860	13246606	45882377	123	1207										
IER2	9592	hgsc.bcm.edu	37	chr19	13264242	13264242	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0364963503649635	5	1	0.735915155005279	2.03112582781457	0.376134412558254	1	1	0	ccgagaagccgagtccacggCcgagacagcgacccccgacg	13	17	0	2	novel		TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	IER2-537	NM_004907	exon2	c.C242T	p.A81V	CCACGGCCGAGAC	.	66	41	2	0	.	44	21	23	0	0	T	13264242	C	T	13264242	3	4	6	1	0	0	0	0	1	0	0	0	7526	739	26	3	244	3	IER2	19	13264242	Missense_Mutation	SNP	C	TCGA-OR-A5J6-01A-31D-A29I-10	17636	13264242	45864741	124	1208										
PODNL1	79883	hgsc.bcm.edu	37	chr19	14043843	14043843	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0364963503649635	5	1	0.735915155005279	2.03112582781457	0.376134412558254	1	1	0	tgcgcagggcacgcaaccggCggaaggcccggtggtgcaca	17	13	0	0	rs80103045	byfrequency	TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	PODNL1-90	NM_024825	exon8	c.G1214A	p.R405H	AACCGGCGGAAGG	.	5	5	0	0	C|0.980;T|0.020	0	0	0	0	0	T	14043843	C	T	14043843	3	4	6	1	0	0	0	0	1	0	0	0	12208	768	27	1	328	1	PODNL1	19	14043843	Missense_Mutation	SNP	C	TCGA-OR-A5J6-01A-31D-A29I-10	779601	14043843	45085140	125	1209										
PKN1	5585	hgsc.bcm.edu	37	chr19	14552020	14552020	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0364963503649635	5	1	0.735915155005279	2.03112582781457	0.376134412558254	1	1	0	ggggcagacctggcggccccCggggtacagcagcagctgga	18	13	0	1	novel		TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	PKN1-1481	NM_213560	exon2	c.C105T	p.P35P	GGCCCCCGGGGTA	.	29	21	2	0	.	23	13	10	0	0	T	14552020	C	T	14552020	2	4	6	1	0	0	0	0	0	0	0	1	12008	639	23	1		1	PKN1	19	14552020	Silent	SNP	C	TCGA-OR-A5J6-01A-31D-A29I-10	508177	14552020	44576963	126	1210										
ZNF85	7639	broad.mit.edu	37	chr19	21117821	21117821	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0364963503649635	5	1	0.735915155005279	2.03112582781457	0.376134412558254	1	1	0	gaaagaggcctggagtatgaAgagacatgagatcatggtgg	16	4	1	4	novel		TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	ZNF85-514	NM_003429	exon3	c.A197C	p.K66T	GTATGAAGAGACA	.	387	8	266	0	.	1	1	0	0	0	C	21117821	A	C	21117821	3	2	6	1	0	0	0	0	1	0	0	0	18230	72	3	5	207	5	ZNF85	19	21117821	Missense_Mutation	SNP	A	TCGA-OR-A5J6-01A-31D-A29I-10	6565801	21117821	38011162	127	1211										
MEGF8	1954	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	42841342	42841342	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0364963503649635	5	1	0.735915155005279	2.03112582781457	0.376134412558254	1	1	0	tcaggagctgagcttgccccGccaggaacccctgagggtga	14	13	1	3	novel		TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	MEGF8-23	NM_001271938	exon8	c.G1497A	p.P499P	TGCCCCGCCAGGA	.	122	27	82	0	.	2	2	0	0	0	A	42841342	G	A	42841342	2	1	6	1	0	0	0	0	0	0	0	1	9491	1074	38	1		1	MEGF8	19	42841342	Silent	SNP	G	TCGA-OR-A5J6-01A-31D-A29I-10	21723521	42841342	16287641	128	1212										
TPRX1	284355	ucsc.edu	37	chr19	48305650	48305650	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0364963503649635	5	1	0.735915155005279	2.03112582781457	0.376134412558254	1	1	0	cctgagattgggcctgggatCgggcctgggatcgggactga	18	9	0	2	rs112397458	bycluster;byfrequency;by1000genomes	TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	TPRX1-90	NM_198479	exon2	c.G618A	p.P206P	TGGGATCGGGCCT	.	60	8	21	0	C|0.912;T|0.088	0	0	0	0	0	T	48305650	C	T	48305650	2	4	6	1	0	0	0	0	0	0	0	1	16460	871	31	1		1	TPRX1	19	48305650	Silent	SNP	C	TCGA-OR-A5J6-01A-31D-A29I-10	5464308	48305650	10823333	129	1213										
SIGLEC5	8778	bcgsc.ca	37	chr19	52115645	52115645	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0364963503649635	5	1	0.735915155005279	2.03112582781457	0.376134412558254	1	1	0	aggagatgcttgatctccggGgctgtctggccagggcttct	15	10	3	2	rs3829655	byfrequency	TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	SIGLEC5-92	NM_003830	exon9	c.C1495G	p.P499A	CTCCGGGGCTGTC	.	44	4	31	0	G|0.550;C|0.450	0	0	0	0	0	C	52115645	G	C	52115645	3	2	6	1	0	0	0	0	1	0	0	0	14346	1232	43	3	164	3	SIGLEC5	19	52115645	Missense_Mutation	SNP	G	TCGA-OR-A5J6-01A-31D-A29I-10	3809995	52115645	7013338	130	1214										
ZNF813	126017	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	53994970	53994970	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0364963503649635	5	1	0.735915155005279	2.03112582781457	0.376134412558254	1	1	0	tcatactggagagaaaccttAcaagtgtaatgaatgtggca	10	6	1	2	novel		TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	ZNF813-67	NM_001004301	exon4	c.A1484G	p.Y495C	AACCTTACAAGTG	.	230	42	184	0	.	51	51	0	0	0	G	53994970	A	G	53994970	3	3	6	1	0	0	0	0	1	0	0	0	18212	391	14	4	1494	4	ZNF813	19	53994970	Missense_Mutation	SNP	A	TCGA-OR-A5J6-01A-31D-A29I-10	1879325	53994970	5134013	131	1215										
PTPRH	5794	broad.mit.edu	37	chr19	55716805	55716805	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0364963503649635	5	1	0.735915155005279	2.03112582781457	0.376134412558254	1	1	0	atccacggtgatgttagtgtGtgctgtgcttcgagtccctg	13	9	0	1	rs200319382		TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	PTPRH-138	NM_002842	exon4	c.C508T	p.H170Y	TAGTGTGTGCTGT	.	364	11	283	2	.	1	1	0	0	0	A	55716805	G	A	55716805	3	1	6	1	0	0	0	0	1	0	0	0	12838	1377	48	3	2907	3	PTPRH	19	55716805	Missense_Mutation	SNP	G	TCGA-OR-A5J6-01A-31D-A29I-10	1721835	55716805	3412178	132	1216										
RALY	22913	hgsc.bcm.edu	37	chr20	32664865	32664866	+	In_Frame_Ins	INS	-	-	AGC													0.0364963503649635	5	1	0.735915155005279	2.03112582781457	0.376134412558254	1	1	0	agggtgatggaggtggcgccINSggcggcggcggcggtggtgg					rs57852506	bycluster	TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	RALY-91	NM_016732	exon8	c.690_691insAGC	p.A230delinsAS	TGGCGCCGGCGGC	.	31	0	13	0	-|0.167;AGC|0.833	0	0	0	0	0	AGC	32664866	-	AGC	32664865	7	5	6	1	0	1	1	0	0	0	0	0	13054	639	23	0	712	0	RALY	20	32664865	In_Frame_Ins	INS	-	TCGA-OR-A5J6-01A-31D-A29I-10		32664865	30360655	133	1217										
CLIC6	54102	hgsc.bcm.edu	37	chr21	36042579	36042579	+	Missense_Mutation	SNP	C	C	G													0.0364963503649635	5	1	0.735915155005279	2.03112582781457	0.376134412558254	1	1	0	gggtctcgggtgagccgcagCaatcgggggacggcagcctc					rs13049028	byfrequency	TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	CLIC6-91	NM_053277	exon1	c.C892G	p.Q298E	CCGCAGCAATCGG	.	13	9	0	0	C|0.802;G|0.198	0	0	0	0	0	G	36042579	C	G	36042579	3	3	6	1	0	0	0	0	1	0	0	0	3536	711	25	3	894	3	CLIC6	21	36042579	Missense_Mutation	SNP	C	TCGA-OR-A5J6-01A-31D-A29I-10		36042579	12087316	134	1218	12	2								
CLIC6	54102	hgsc.bcm.edu	37	chr21	36042584	36042584	+	Silent	SNP	G	G	A													0.0364963503649635	5	1	0.735915155005279	2.03112582781457	0.376134412558254	1	1	0	tcgggtgagccgcagcaatcGggggacggcagcctctcgcc					rs13049239	byfrequency	TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	CLIC6-91	NM_053277	exon1	c.G897A	p.S299S	GCAATCGGGGGAC	.	12	8	0	0	G|0.803;A|0.197	0	0	0	0	0	A	36042584	G	A	36042584	2	1	6	1	0	0	0	0	0	0	0	1	3536	1103	39	1		1	CLIC6	21	36042584	Silent	SNP	G	TCGA-OR-A5J6-01A-31D-A29I-10	5	36042584	12087311	135	1219	12	2								
KRTAP10-2	386679	hgsc.bcm.edu	37	chr21	45971108	45971108	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0364963503649635	5	1	0.735915155005279	2.03112582781457	0.376134412558254	1	1	0	cagctagactgctggcagcaCgagggcgtgcaggagctggt	17	10	0	1	novel		TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	KRTAP10-2-135	NM_198693	exon1	c.G234A	p.S78S	GCAGCACGAGGGC	.	110	18	0	0	.	0	0	0	0	0	T	45971108	C	T	45971108	2	4	6	1	0	0	0	0	0	0	0	1	8530	523	19	1		1	KRTAP10-2	21	45971108	Silent	SNP	C	TCGA-OR-A5J6-01A-31D-A29I-10	9928524	45971108	2158787	136	1220										
CDKL5	6792	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	18631388	18631388	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0364963503649635	5	1	0.735915155005279	2.03112582781457	0.376134412558254	1	1	0	caaaaagacaaccagcattcGatccatggtgagcattttgg	9	9	0	2	novel		TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	CDKL5-838	NM_003159	exon15	c.G2269T	p.D757Y	GCATTCGATCCAT	.	253	43	259	0	.	0	0	0	0	0	T	18631388	G	T	18631388	3	4	6	1	0	0	0	0	1	0	0	0	3163	1058	37	2	2323	2	CDKL5	23	18631388	Missense_Mutation	SNP	G	TCGA-OR-A5J6-01A-31D-A29I-10		18631388	136639172	137	1221										
SH3KBP1	30011	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	19587243	19587243	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0364963503649635	5	1	0.735915155005279	2.03112582781457	0.376134412558254	1	1	0	atgtcattgctgcggtccgaGagatctttgtccaggatgcc	12	10	2	1	novel		TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	SH3KBP1-130	NM_031892	exon13	c.C1362T	p.L454L	GTCCGAGAGATCT	.	142	33	109	0	.	7	3	4	0	0	A	19587243	G	A	19587243	2	1	6	1	0	0	0	0	0	0	0	1	14290	929	33	3		3	SH3KBP1	23	19587243	Silent	SNP	G	TCGA-OR-A5J6-01A-31D-A29I-10	955855	19587243	135683317	138	1222										
PPP1R3F	89801	hgsc.bcm.edu	37	chrX	49126714	49126714	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0364963503649635	5	1	0.735915155005279	2.03112582781457	0.376134412558254	1	1	0	tgccgcccgcgccgggccgtCtggagcgcttggggcgcgtc	18	16	1	0	rs111938103		TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	PPP1R3F-229	NM_033215	exon1	c.C382T	p.L128L	GGCCGTCTGGAGC	.	8	6	0	0	C|0.941;T|0.059	0	0	0	0	0	T	49126714	C	T	49126714	2	4	6	1	0	0	0	0	0	0	0	1	12407	912	32	3		3	PPP1R3F	23	49126714	Silent	SNP	C	TCGA-OR-A5J6-01A-31D-A29I-10	29539471	49126714	106143846	139	1223										
TRPC5	7224	broad.mit.edu;bcgsc.ca	37	chrX	111195291	111195291	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0364963503649635	5	1	0.735915155005279	2.03112582781457	0.376134412558254	1	1	0	ctgcttctctccgctgggccGcctgtagctgagcagaagct	12	14	1	2	novel		TCGA-OR-A5J6-01A-31D-A29I-10	TCGA-OR-A5J6-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	687986f9-fe70-495e-bcb2-569529c56ff2	6c4bf8c2-d374-473b-84f8-7545ce3e3aee	.	TRPC5-130	NM_012471	exon2	c.C358T	p.R120W	TGGGCCGCCTGTA	.	189	6	197	0	.	0	0	0	0	0	A	111195291	G	A	111195291	3	1	6	1	0	0	0	0	1	0	0	0	16620	1086	38	1	2603	1	TRPC5	23	111195291	Missense_Mutation	SNP	G	TCGA-OR-A5J6-01A-31D-A29I-10	62068577	111195291	44075269	140	1224										
DHRS3	9249	bcgsc.ca	37	chr1	12640650	12640650	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0630630630630631	7	1	1.06355738454504	2.61054994388328	0.233463816119643	0.068649885583524	0.532036613272311	0	cccatctgccggatctcctcCgtcgtctccttcaggcattt	7	17	4	0	rs11540058	byfrequency	TCGA-OR-A5J7-01A-11D-A29I-10	TCGA-OR-A5J7-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	00b8b899-6191-4169-91bd-a507c326e44d	70d268da-65d7-4e91-a743-63c901185bfd	.	DHRS3-91	NM_004753	exon2	c.G240A	p.T80T	CTCCTCCGTCGTC	.	142	5	166	2	C|0.868;T|0.132	20	20	0	0	0	T	12640650	C	T	12640650	2	4	7	1	0	0	0	0	0	0	0	1	4502	639	23	1		1	DHRS3	1	12640650	Silent	SNP	C	TCGA-OR-A5J7-01A-11D-A29I-10		12640650	236609971	1	1225										
CTBS	1486	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	85036384	85036384	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0630630630630631	7	1	1.06355738454504	2.61054994388328	0.233463816119643	0.068649885583524	0.532036613272311	0	aagatttccaagttttctgtCcaacatcaaacacaaagacc	4	11	2	2	novel		TCGA-OR-A5J7-01A-11D-A29I-10	TCGA-OR-A5J7-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	00b8b899-6191-4169-91bd-a507c326e44d	70d268da-65d7-4e91-a743-63c901185bfd	.	CTBS-90	NM_004388	exon2	c.G197A	p.G66E	TTCTGTCCAACAT	.	76	11	104	0	.	13	11	2	0	0	T	85036384	C	T	85036384	3	4	7	1	0	0	0	0	1	0	0	0	4005	855	30	3	984	3	CTBS	1	85036384	Missense_Mutation	SNP	C	TCGA-OR-A5J7-01A-11D-A29I-10	72395734	85036384	164214237	2	1226										
PDE4DIP	9659	broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr1	144930794	144930794	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0630630630630631	7	1	1.06355738454504	2.61054994388328	0.233463816119643	0.068649885583524	0.532036613272311	0	ggaagcctgctccctcggggGctctggatgggcttataatc	14	11	1	0	novel		TCGA-OR-A5J7-01A-11D-A29I-10	TCGA-OR-A5J7-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	00b8b899-6191-4169-91bd-a507c326e44d	70d268da-65d7-4e91-a743-63c901185bfd	.	PDE4DIP-663	NM_001002811	exon1	c.C915G	p.S305R	TCGGGGGCTCTGG	.	256	48	229	1	.	4	4	0	0	0	C	144930794	G	C	144930794	3	2	7	1	0	0	0	0	1	0	0	0	11672	1194	42	3	6784	3	PDE4DIP	1	144930794	Missense_Mutation	SNP	G	TCGA-OR-A5J7-01A-11D-A29I-10	59894410	144930794	104319827	3	1227										
ATF6	22926	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	161761234	161761234	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.0630630630630631	7	1	1.06355738454504	2.61054994388328	0.233463816119643	0.068649885583524	0.532036613272311	0	cttctagttctcagatgtctCccctttccttatatggtgaa	6	11	3	2	novel		TCGA-OR-A5J7-01A-11D-A29I-10	TCGA-OR-A5J7-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	00b8b899-6191-4169-91bd-a507c326e44d	70d268da-65d7-4e91-a743-63c901185bfd	.	ATF6-93	NM_007348	exon5	c.C391G	p.P131A	ATGTCTCCCCTTT	.	59	29	64	0	.	16	4	12	0	0	G	161761234	C	G	161761234	3	3	7	1	0	0	0	0	1	0	0	0	1085	855	30	3	409	3	ATF6	1	161761234	Missense_Mutation	SNP	C	TCGA-OR-A5J7-01A-11D-A29I-10	16830440	161761234	87489387	4	1228										
JMJD4	65094	hgsc.bcm.edu	37	chr1	227923081	227923081	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0630630630630631	7	1	1.06355738454504	2.61054994388328	0.233463816119643	0.068649885583524	0.532036613272311	0	gggcgccgcgtttctgccccGccagcgcctggggctccggg	17	17	1	0	rs7419238		TCGA-OR-A5J7-01A-11D-A29I-10	TCGA-OR-A5J7-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	00b8b899-6191-4169-91bd-a507c326e44d	70d268da-65d7-4e91-a743-63c901185bfd	.	JMJD4-226	NM_023007	exon1	c.C32T	p.A11V	TGCCCCGCCAGCG	.	9	9	0	0	G|0.002;A|0.998	1	0	1	0	0	A	227923081	G	A	227923081	3	1	7	1	0	0	0	0	1	0	0	0	7972	1087	38	1	1383	1	JMJD4	1	227923081	Missense_Mutation	SNP	G	TCGA-OR-A5J7-01A-11D-A29I-10	66161847	227923081	21327540	5	1229										
SLC35F3	148641	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	234444906	234444906	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0630630630630631	7	1	1.06355738454504	2.61054994388328	0.233463816119643	0.068649885583524	0.532036613272311	0	gaaggtgttttttaccaaggCagcaccctttggtgttcttt	10	8	1	0	novel		TCGA-OR-A5J7-01A-11D-A29I-10	TCGA-OR-A5J7-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	00b8b899-6191-4169-91bd-a507c326e44d	70d268da-65d7-4e91-a743-63c901185bfd	.	SLC35F3-92	NM_173508	exon4	c.C668A	p.A223E	CCAAGGCAGCACC	.	110	24	106	0	.	0	0	0	0	0	A	234444906	C	A	234444906	3	1	7	1	0	0	0	0	1	0	0	0	14625	710	25	3	682	3	SLC35F3	1	234444906	Missense_Mutation	SNP	C	TCGA-OR-A5J7-01A-11D-A29I-10	6521825	234444906	14805715	6	1230										
HADHA	3030	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr2	26418025	26418026	+	In_Frame_Ins	INS	-	-	TGGAAA													0.0630630630630631	7	1	1.06355738454504	2.61054994388328	0.233463816119643	0.068649885583524	0.532036613272311	0	agctgaagcactggtgtcttINStggaagttttctcggtcgtg					novel		TCGA-OR-A5J7-01A-11D-A29I-10	TCGA-OR-A5J7-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	00b8b899-6191-4169-91bd-a507c326e44d	70d268da-65d7-4e91-a743-63c901185bfd	.	HADHA-91	NM_000182	exon15	c.1556_1557insTTTCCA	p.K519delinsISK	GTGTCTTTGGAAG	.	151	23	211	0	.	0	0	0	0	0	TGGAAA	26418026	-	TGGAAA	26418025	7	5	7	1	0	1	1	0	0	0	0	0	6964	1841	64	0	759	0	HADHA	2	26418025	In_Frame_Ins	INS	-	TCGA-OR-A5J7-01A-11D-A29I-10		26418025	216781348	7	1231										
LTBP1	4052	ucsc.edu	37	chr2	33500091	33500091	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0630630630630631	7	1	1.06355738454504	2.61054994388328	0.233463816119643	0.068649885583524	0.532036613272311	0	agggccgctgtgaaaacaccGagggaagtttcttgtgcatt	13	8	1	1	novel		TCGA-OR-A5J7-01A-11D-A29I-10	TCGA-OR-A5J7-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	00b8b899-6191-4169-91bd-a507c326e44d	70d268da-65d7-4e91-a743-63c901185bfd	.	LTBP1-230	NM_206943	exon17	c.G2803A	p.E935K	AACACCGAGGGAA	.	83	12	113	2	.	17	14	3	0	0	A	33500091	G	A	33500091	3	1	7	1	0	0	0	0	1	0	0	0	9100	1059	37	1	2924	1	LTBP1	2	33500091	Missense_Mutation	SNP	G	TCGA-OR-A5J7-01A-11D-A29I-10	7082066	33500091	209699282	8	1232										
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	179569656	179569656	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0630630630630631	7	1	1.06355738454504	2.61054994388328	0.233463816119643	0.068649885583524	0.532036613272311	0	atacaagttcctcaaattccTtttcgtccctctctgacctc	3	15	2	1	novel		TCGA-OR-A5J7-01A-11D-A29I-10	TCGA-OR-A5J7-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	00b8b899-6191-4169-91bd-a507c326e44d	70d268da-65d7-4e91-a743-63c901185bfd	.	TTN-636	NM_001267550	exon104	c.A29642T	p.K9881M	AATTCCTTTTCGT	.	84	29	93	0	.	0	0	0	0	0	A	179569656	T	A	179569656	3	1	7	1	0	0	0	0	1	0	0	0	16773	1609	56	5	74923	5	TTN	2	179569656	Missense_Mutation	SNP	T	TCGA-OR-A5J7-01A-11D-A29I-10	146069565	179569656	63629717	9	1233										
ANKAR	150709	hgsc.bcm.edu;bcgsc.ca	37	chr2	190611186	190611186	+	Frame_Shift_Del	DEL	A	A	-													0.0630630630630631	7	1	1.06355738454504	2.61054994388328	0.233463816119643	0.068649885583524	0.532036613272311	0	tacctcctgtaactaacttcAtgggactcttcaaagcaaca					novel		TCGA-OR-A5J7-01A-11D-A29I-10	TCGA-OR-A5J7-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	00b8b899-6191-4169-91bd-a507c326e44d	70d268da-65d7-4e91-a743-63c901185bfd	.	ANKAR-72	NM_144708	exon23	c.4138delA	p.M1380fs	AACTTCATGGGAC	.	296	74	159	0	.	0	0	0	0	0	-	190611186	A	-	190611186	7	5	7	1	0	1	0	1	0	0	0	0	623	217	8	0	4224	0	ANKAR	2	190611186	Frame_Shift_Del	DEL	A	TCGA-OR-A5J7-01A-11D-A29I-10	11041530	190611186	52588187	10	1234										
CCDC150	284992	hgsc.bcm.edu	37	chr2	197531518	197531519	+	Frame_Shift_Ins	INS	-	-	A													0.0630630630630631	7	1	1.06355738454504	2.61054994388328	0.233463816119643	0.068649885583524	0.532036613272311	0	agaactactggcccaggaacINSaaaaaaaaaaagaagagttg					novel		TCGA-OR-A5J7-01A-11D-A29I-10	TCGA-OR-A5J7-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	00b8b899-6191-4169-91bd-a507c326e44d	70d268da-65d7-4e91-a743-63c901185bfd	.	.	NM_001080539	exon7	c.838_839insA	p.Q280fs	CAGGAACAAAAAA	.	395	0	153	0	.	0	0	0	0	0	A	197531519	-	A	197531518	7	5	7	1	0	1	1	0	0	0	0	0	2791	479	17	0	864	0	CCDC150	2	197531518	Frame_Shift_Ins	INS	-	TCGA-OR-A5J7-01A-11D-A29I-10	6920332	197531518	45667855	11	1235										
SP140	11262	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	231103027	231103027	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0630630630630631	7	1	1.06355738454504	2.61054994388328	0.233463816119643	0.068649885583524	0.532036613272311	0	ttggctggtcacatctggaaGcattgttcagcaggattaac	11	8	3	0	novel		TCGA-OR-A5J7-01A-11D-A29I-10	TCGA-OR-A5J7-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	00b8b899-6191-4169-91bd-a507c326e44d	70d268da-65d7-4e91-a743-63c901185bfd	.	SP140-90	NM_007237	exon3	c.G337A	p.A113T	CTGGAAGCATTGT	.	363	87	257	0	.	1	1	0	0	0	A	231103027	G	A	231103027	3	1	7	1	0	0	0	0	1	0	0	0	14997	971	34	3	347	3	SP140	2	231103027	Missense_Mutation	SNP	G	TCGA-OR-A5J7-01A-11D-A29I-10	33571509	231103027	12096346	12	1236										
ALPPL2	251	hgsc.bcm.edu	37	chr2	233274476	233274476	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0630630630630631	7	1	1.06355738454504	2.61054994388328	0.233463816119643	0.068649885583524	0.532036613272311	0	cgcctgcgacctggcgccccGcgccggcaccaccgacgccg	13	22	0	0	rs61730278	byfrequency	TCGA-OR-A5J7-01A-11D-A29I-10	TCGA-OR-A5J7-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	00b8b899-6191-4169-91bd-a507c326e44d	70d268da-65d7-4e91-a743-63c901185bfd	.	ALPPL2-91	NM_031313	exon11	c.G1493C	p.R498P	CGCCCCGCGCCGG	.	17	5	0	0	G|0.946;C|0.054	0	0	0	0	0	C	233274476	G	C	233274476	3	2	7	1	0	0	0	0	1	0	0	0	549	1087	38	2	1535	2	ALPPL2	2	233274476	Missense_Mutation	SNP	G	TCGA-OR-A5J7-01A-11D-A29I-10	2171449	233274476	9924897	13	1237										
MYEOV2	150678	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr2	241075689	241075689	+	Frame_Shift_Del	DEL	C	C	-													0.0630630630630631	7	1	1.06355738454504	2.61054994388328	0.233463816119643	0.068649885583524	0.532036613272311	0	ctcggggaacatctcgtccaCcgccggcttcatctcggggc					novel		TCGA-OR-A5J7-01A-11D-A29I-10	TCGA-OR-A5J7-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	00b8b899-6191-4169-91bd-a507c326e44d	70d268da-65d7-4e91-a743-63c901185bfd	.	MYEOV2-68	NM_138336	exon1	c.76delG	p.V26fs	CGTCCACCGCCGG	.	87	30	24	0	.	0	0	0	0	0	-	241075689	C	-	241075689	7	5	7	1	0	1	0	1	0	0	0	0	10054	507	18	0	706	0	MYEOV2	2	241075689	Frame_Shift_Del	DEL	C	TCGA-OR-A5J7-01A-11D-A29I-10	7801213	241075689	2123684	14	1238										
ITPR1	3708	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	4715039	4715039	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0630630630630631	7	1	1.06355738454504	2.61054994388328	0.233463816119643	0.068649885583524	0.532036613272311	0	gtgaaatatgcccgcctctgGtcggagattccctcggagat	12	11	1	3	novel		TCGA-OR-A5J7-01A-11D-A29I-10	TCGA-OR-A5J7-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	00b8b899-6191-4169-91bd-a507c326e44d	70d268da-65d7-4e91-a743-63c901185bfd	.	ITPR1-710	NM_001099952	exon21	c.G2424C	p.W808C	CCTCTGGTCGGAG	.	74	30	122	0	.	1	0	1	0	0	C	4715039	G	C	4715039	3	2	7	1	0	0	0	0	1	0	0	0	7941	1270	44	3	2498	3	ITPR1	3	4715039	Missense_Mutation	SNP	G	TCGA-OR-A5J7-01A-11D-A29I-10		4715039	193307391	15	1239										
BRPF1	7862	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	9780990	9780990	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.0630630630630631	7	1	1.06355738454504	2.61054994388328	0.233463816119643	0.068649885583524	0.532036613272311	0	gcaacctggccgtgcaccagGagtgctacggtgtcccctat	12	14	0	0	novel		TCGA-OR-A5J7-01A-11D-A29I-10	TCGA-OR-A5J7-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	00b8b899-6191-4169-91bd-a507c326e44d	70d268da-65d7-4e91-a743-63c901185bfd	.	BRPF1-92	NM_001003694	exon3	c.G907C	p.E303Q	CACCAGGAGTGCT	.	202	65	260	0	.	8	6	2	0	0	C	9780990	G	C	9780990	3	2	7	1	0	0	0	0	1	0	0	0	1523	1175	41	3	913	3	BRPF1	3	9780990	Missense_Mutation	SNP	G	TCGA-OR-A5J7-01A-11D-A29I-10	5065951	9780990	188241440	16	1240										
BRPF1	7862	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	9787330	9787330	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.0630630630630631	7	1	1.06355738454504	2.61054994388328	0.233463816119643	0.068649885583524	0.532036613272311	0	tcccagaggacagcagtgagGatacctcaggcactgagaat	12	10	1	3	novel		TCGA-OR-A5J7-01A-11D-A29I-10	TCGA-OR-A5J7-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	00b8b899-6191-4169-91bd-a507c326e44d	70d268da-65d7-4e91-a743-63c901185bfd	.	BRPF1-92	NM_001003694	exon11	c.G3142C	p.D1048H	AGTGAGGATACCT	.	173	50	191	0	.	22	9	13	0	0	C	9787330	G	C	9787330	3	2	7	1	0	0	0	0	1	0	0	0	1523	1174	41	3	3180	3	BRPF1	3	9787330	Missense_Mutation	SNP	G	TCGA-OR-A5J7-01A-11D-A29I-10	6340	9787330	188235100	17	1241										
OGG1	4968	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	9792837	9792837	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0630630630630631	7	1	1.06355738454504	2.61054994388328	0.233463816119643	0.068649885583524	0.532036613272311	0	tgtatcaccactggggttccGtggactcccacttccaagag	10	13	1	1	novel		TCGA-OR-A5J7-01A-11D-A29I-10	TCGA-OR-A5J7-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	00b8b899-6191-4169-91bd-a507c326e44d	70d268da-65d7-4e91-a743-63c901185bfd	.	OGG1-660	NM_016819	exon2	c.G346A	p.V116M	GGTTCCGTGGACT	.	196	55	232	1	.	16	8	8	0	0	A	9792837	G	A	9792837	3	1	7	1	0	0	0	0	1	0	0	0	10874	1145	40	1	352	1	OGG1	3	9792837	Missense_Mutation	SNP	G	TCGA-OR-A5J7-01A-11D-A29I-10	5507	9792837	188229593	18	1242										
GOLGA4	2803	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	37368506	37368506	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0630630630630631	7	1	1.06355738454504	2.61054994388328	0.233463816119643	0.068649885583524	0.532036613272311	0	agaaacattaattgtacccaGatcagcaaaaaatgtggcag	8	7	1	2	novel		TCGA-OR-A5J7-01A-11D-A29I-10	TCGA-OR-A5J7-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	00b8b899-6191-4169-91bd-a507c326e44d	70d268da-65d7-4e91-a743-63c901185bfd	.	GOLGA4-93	NM_001172713	exon15	c.G5195T	p.R1732I	TACCCAGATCAGC	.	146	56	80	0	.	98	82	15	1	0	T	37368506	G	T	37368506	3	4	7	1	0	0	0	0	1	0	0	0	6575	942	33	3	5253	3	GOLGA4	3	37368506	Missense_Mutation	SNP	G	TCGA-OR-A5J7-01A-11D-A29I-10	27575669	37368506	160653924	19	1243										
XIRP1	165904	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	39227962	39227962	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0630630630630631	7	1	1.06355738454504	2.61054994388328	0.233463816119643	0.068649885583524	0.532036613272311	0	caatggcctgaggagggcaaGgggtggcccctgaggctctc	17	11	1	2	novel		TCGA-OR-A5J7-01A-11D-A29I-10	TCGA-OR-A5J7-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	00b8b899-6191-4169-91bd-a507c326e44d	70d268da-65d7-4e91-a743-63c901185bfd	.	XIRP1-158	NM_001198621	exon2	c.C2975T	p.P992L	GGGCAAGGGGTGG	.	44	19	81	0	.	0	0	0	0	0	A	39227962	G	A	39227962	3	1	7	1	0	0	0	0	1	0	0	0	17467	1000	35	3	2560	3	XIRP1	3	39227962	Missense_Mutation	SNP	G	TCGA-OR-A5J7-01A-11D-A29I-10	1859456	39227962	158794468	20	1244										
HSPBAP1	79663	broad.mit.edu	37	chr3	122487688	122487688	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0630630630630631	7	1	1.06355738454504	2.61054994388328	0.233463816119643	0.068649885583524	0.532036613272311	0	ccaggtcagaaactcttcgaGtgtagcttctacgtaattac	8	10	3	1	novel		TCGA-OR-A5J7-01A-11D-A29I-10	TCGA-OR-A5J7-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	00b8b899-6191-4169-91bd-a507c326e44d	70d268da-65d7-4e91-a743-63c901185bfd	.	HSPBAP1-227	NM_024610	exon3	c.C292A	p.L98I	CTTCGAGTGTAGC	.	193	7	206	3	.	7	7	0	0	0	T	122487688	G	T	122487688	3	4	7	1	0	0	0	0	1	0	0	0	7446	1029	36	3	1198	3	HSPBAP1	3	122487688	Missense_Mutation	SNP	G	TCGA-OR-A5J7-01A-11D-A29I-10	83259726	122487688	75534742	21	1245										
HRG	3273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	186386808	186386808	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0630630630630631	7	1	1.06355738454504	2.61054994388328	0.233463816119643	0.068649885583524	0.532036613272311	0	ggaaatactggaatgactgtGagccacctgattccagacgt	11	9	0	4	novel		TCGA-OR-A5J7-01A-11D-A29I-10	TCGA-OR-A5J7-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	00b8b899-6191-4169-91bd-a507c326e44d	70d268da-65d7-4e91-a743-63c901185bfd	.	HRG-91	NM_000412	exon2	c.G268C	p.E90Q	GACTGTGAGCCAC	.	122	19	169	0	.	0	0	0	0	0	C	186386808	G	C	186386808	3	2	7	1	0	0	0	0	1	0	0	0	7375	1291	45	3	274	3	HRG	3	186386808	Missense_Mutation	SNP	G	TCGA-OR-A5J7-01A-11D-A29I-10	63899120	186386808	11635622	22	1246										
MUC4	4585	bcgsc.ca	37	chr3	195513123	195513123	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0630630630630631	7	1	1.06355738454504	2.61054994388328	0.233463816119643	0.068649885583524	0.532036613272311	0	gaaaggccggtgacaggaagTggggtggcgtgagctgtgga	21	5	0	2	novel		TCGA-OR-A5J7-01A-11D-A29I-10	TCGA-OR-A5J7-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	00b8b899-6191-4169-91bd-a507c326e44d	70d268da-65d7-4e91-a743-63c901185bfd	.	MUC4-90	NM_018406	exon2	c.A5328T	p.P1776P	AGGAAGTGGGGTG	.	1656	164	2147	76	.	0	0	0	0	0	A	195513123	T	A	195513123	2	1	7	1	0	0	0	0	0	0	0	1	10006	1683	59	5		5	MUC4	3	195513123	Silent	SNP	T	TCGA-OR-A5J7-01A-11D-A29I-10	9126315	195513123	2509307	23	1247			1	3		6	6	1930	N	T_G	1.304868e-13
MUC4	4585	bcgsc.ca	37	chr3	195513136	195513136	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0630630630630631	7	1	1.06355738454504	2.61054994388328	0.233463816119643	0.068649885583524	0.532036613272311	0	caggaagtggggtggcgtgaGctgtggatactgaggaagtg	20	4	0	2	rs140116971		TCGA-OR-A5J7-01A-11D-A29I-10	TCGA-OR-A5J7-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	00b8b899-6191-4169-91bd-a507c326e44d	70d268da-65d7-4e91-a743-63c901185bfd	.	MUC4-90	NM_018406	exon2	c.C5315G	p.A1772G	GCGTGAGCTGTGG	.	1561	148	1955	62	.	0	0	0	0	0	C	195513136	G	C	195513136	3	2	7	1	0	0	0	0	1	0	0	0	10006	971	34	3		3	MUC4	3	195513136	Missense_Mutation	SNP	G	TCGA-OR-A5J7-01A-11D-A29I-10	13	195513136	2509294	24	1248			1	3		6	6	1930	N	T_G	1.304868e-13
MUC4	4585	bcgsc.ca	37	chr3	195513154	195513154	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0630630630630631	7	1	1.06355738454504	2.61054994388328	0.233463816119643	0.068649885583524	0.532036613272311	0	gagctgtggatactgaggaaGtgtcggtgacaggaagaggg	19	4	0	3	novel		TCGA-OR-A5J7-01A-11D-A29I-10	TCGA-OR-A5J7-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	00b8b899-6191-4169-91bd-a507c326e44d	70d268da-65d7-4e91-a743-63c901185bfd	.	MUC4-90	NM_018406	exon2	c.C5297A	p.T1766N	GAGGAAGTGTCGG	.	1393	143	1677	44	.	0	0	0	0	0	T	195513154	G	T	195513154	3	4	7	1	0	0	0	0	1	0	0	0	10006	1029	36	3		3	MUC4	3	195513154	Missense_Mutation	SNP	G	TCGA-OR-A5J7-01A-11D-A29I-10	18	195513154	2509276	25	1249			1	3		6	6	1930	N	T_G	1.304868e-13
MUC4	4585	bcgsc.ca	37	chr3	195513634	195513634	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0630630630630631	7	1	1.06355738454504	2.61054994388328	0.233463816119643	0.068649885583524	0.532036613272311	0	gacctgtagatgctgaggaaGggctggtgacaggaagaggg	19	5	0	4	novel		TCGA-OR-A5J7-01A-11D-A29I-10	TCGA-OR-A5J7-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	00b8b899-6191-4169-91bd-a507c326e44d	70d268da-65d7-4e91-a743-63c901185bfd	.	MUC4-90	NM_018406	exon2	c.C4817T	p.P1606L	GAGGAAGGGCTGG	.	528	38	912	7	.	0	0	0	0	0	A	195513634	G	A	195513634	3	1	7	1	0	0	0	0	1	0	0	0	10006	1000	35	3		3	MUC4	3	195513634	Missense_Mutation	SNP	G	TCGA-OR-A5J7-01A-11D-A29I-10	480	195513634	2508796	26	1250			1	3		6	6	1930	N	T_G	1.304868e-13
MUC4	4585	bcgsc.ca	37	chr3	195515038	195515038	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0630630630630631	7	1	1.06355738454504	2.61054994388328	0.233463816119643	0.068649885583524	0.532036613272311	0	ctgaggaagtgtcggtgacaGgaagagaggtggcgtgacct	18	6	0	4	rs201206859		TCGA-OR-A5J7-01A-11D-A29I-10	TCGA-OR-A5J7-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	00b8b899-6191-4169-91bd-a507c326e44d	70d268da-65d7-4e91-a743-63c901185bfd	.	MUC4-90	NM_018406	exon2	c.C3413T	p.P1138L	GTGACAGGAAGAG	.	357	13	682	9	.	0	0	0	0	0	A	195515038	G	A	195515038	3	1	7	1	0	0	0	0	1	0	0	0	10006	1000	35	3		3	MUC4	3	195515038	Missense_Mutation	SNP	G	TCGA-OR-A5J7-01A-11D-A29I-10	1404	195515038	2507392	27	1251			1	3		6	6	1930	N	T_G	1.304868e-13
MUC4	4585	bcgsc.ca	37	chr3	195515052	195515052	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0630630630630631	7	1	1.06355738454504	2.61054994388328	0.233463816119643	0.068649885583524	0.532036613272311	0	gtgacaggaagagaggtggcGtgacctgtggatgctgagga	19	5	0	4	novel		TCGA-OR-A5J7-01A-11D-A29I-10	TCGA-OR-A5J7-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	00b8b899-6191-4169-91bd-a507c326e44d	70d268da-65d7-4e91-a743-63c901185bfd	.	MUC4-90	NM_018406	exon2	c.C3399G	p.H1133Q	GGTGGCGTGACCT	.	369	17	672	12	.	0	0	0	0	0	C	195515052	G	C	195515052	3	2	7	1	0	0	0	0	1	0	0	0	10006	1136	40	2		2	MUC4	3	195515052	Missense_Mutation	SNP	G	TCGA-OR-A5J7-01A-11D-A29I-10	14	195515052	2507378	28	1252			1	3		6	6	1930	N	T_G	1.304868e-13
TET2	54790	hgsc.bcm.edu;bcgsc.ca	37	chr4	106157773	106157773	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0630630630630631	7	1	1.06355738454504	2.61054994388328	0.233463816119643	0.068649885583524	0.532036613272311	0	aacaggagcagaagtcacaaCaagcttcagttctacaggga	10	9	3	1	novel		TCGA-OR-A5J7-01A-11D-A29I-10	TCGA-OR-A5J7-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	00b8b899-6191-4169-91bd-a507c326e44d	70d268da-65d7-4e91-a743-63c901185bfd	.	TET2-4618	NM_001127208	exon3	c.C2674G	p.Q892E	TCACAACAAGCTT	.	90	10	92	0	.	0	0	0	0	0	G	106157773	C	G	106157773	3	3	7	1	0	0	0	0	1	0	0	0	15807	479	17	3	2676	3	TET2	4	106157773	Missense_Mutation	SNP	C	TCGA-OR-A5J7-01A-11D-A29I-10		106157773	84996503	29	1253										
C4orf32	132720	hgsc.bcm.edu	37	chr4	113066831	113066831	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0630630630630631	7	1	1.06355738454504	2.61054994388328	0.233463816119643	0.068649885583524	0.532036613272311	0	gcgggaggcggcagggaccgGgtgggatcccggggcgagcc	23	11	0	0	rs10002700		TCGA-OR-A5J7-01A-11D-A29I-10	TCGA-OR-A5J7-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	00b8b899-6191-4169-91bd-a507c326e44d	70d268da-65d7-4e91-a743-63c901185bfd	.	C4orf32-90	NM_152400	exon1	c.G95A	p.G32E	GGACCGGGTGGGA	.	4	4	0	0	G|0.022;A|0.978	1	0	1	0	0	A	113066831	G	A	113066831	3	1	7	1	0	0	0	0	1	0	0	0	2268	1232	43	3	97	3	C4orf32	4	113066831	Missense_Mutation	SNP	G	TCGA-OR-A5J7-01A-11D-A29I-10	6909058	113066831	78087445	30	1254										
PRMT10	90826	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	148605040	148605040	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0630630630630631	7	1	1.06355738454504	2.61054994388328	0.233463816119643	0.068649885583524	0.532036613272311	0	tcctggacgcccagacagtgCtctgcgctctgcaaggaccg	12	15	2	1	novel		TCGA-OR-A5J7-01A-11D-A29I-10	TCGA-OR-A5J7-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	00b8b899-6191-4169-91bd-a507c326e44d	70d268da-65d7-4e91-a743-63c901185bfd	.	PRMT10-91	NM_138364	exon1	c.G99A	p.E33E	ACAGTGCTCTGCG	.	108	35	161	0	.	2	2	0	0	0	T	148605040	C	T	148605040	2	4	7	1	0	0	0	0	0	0	0	1	12568	796	28	3		3	PRMT10	4	148605040	Silent	SNP	C	TCGA-OR-A5J7-01A-11D-A29I-10	35538209	148605040	42549236	31	1255										
FBXO8	26269	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	175184113	175184113	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0630630630630631	7	1	1.06355738454504	2.61054994388328	0.233463816119643	0.068649885583524	0.532036613272311	0	tgcctccttggacttgtttaCgatgattggtgttagaaatg	11	6	0	2	novel		TCGA-OR-A5J7-01A-11D-A29I-10	TCGA-OR-A5J7-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	00b8b899-6191-4169-91bd-a507c326e44d	70d268da-65d7-4e91-a743-63c901185bfd	.	FBXO8-290	NM_012180	exon2	c.G131A	p.R44H	TGTTTACGATGAT	.	195	73	311	1	.	34	18	16	0	0	T	175184113	C	T	175184113	3	4	7	1	0	0	0	0	1	0	0	0	5780	536	19	1	848	1	FBXO8	4	175184113	Missense_Mutation	SNP	C	TCGA-OR-A5J7-01A-11D-A29I-10	26579073	175184113	15970163	32	1256										
SLC6A19	340024	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	1214090	1214090	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0630630630630631	7	1	1.06355738454504	2.61054994388328	0.233463816119643	0.068649885583524	0.532036613272311	0	cacggagctggcccagccggAcacctggctggacgcgggcg	17	15	0	0	novel		TCGA-OR-A5J7-01A-11D-A29I-10	TCGA-OR-A5J7-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	00b8b899-6191-4169-91bd-a507c326e44d	70d268da-65d7-4e91-a743-63c901185bfd	.	SLC6A19-90	NM_001003841	exon6	c.A797G	p.D266G	AGCCGGACACCTG	.	58	14	73	0	.	0	0	0	0	0	G	1214090	A	G	1214090	3	3	7	1	0	0	0	0	1	0	0	0	14717	275	10	4	819	4	SLC6A19	5	1214090	Missense_Mutation	SNP	A	TCGA-OR-A5J7-01A-11D-A29I-10		1214090	179701170	33	1257										
SRD5A1	6715	hgsc.bcm.edu	37	chr5	6633779	6633779	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0630630630630631	7	1	1.06355738454504	2.61054994388328	0.233463816119643	0.068649885583524	0.532036613272311	0	ggctgcgcggtcttcgcgcgCaatcgtcagacgaactcagt	13	13	3	1	rs248793	byfrequency	TCGA-OR-A5J7-01A-11D-A29I-10	TCGA-OR-A5J7-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	00b8b899-6191-4169-91bd-a507c326e44d	70d268da-65d7-4e91-a743-63c901185bfd	.	SRD5A1-90	NM_001047	exon1	c.C90G	p.R30R	CGCGCGCAATCGT	.	7	6	0	0	C|0.454;G|0.546	0	0	0	0	0	G	6633779	C	G	6633779	2	3	7	1	0	0	0	0	0	0	0	1	15175	697	25	3		3	SRD5A1	5	6633779	Silent	SNP	C	TCGA-OR-A5J7-01A-11D-A29I-10	5419689	6633779	174281481	34	1258										
DNAH5	1767	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	13753560	13753560	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0630630630630631	7	1	1.06355738454504	2.61054994388328	0.233463816119643	0.068649885583524	0.532036613272311	0	tccaaatggaattttccgggCtttcatttccttccgccagt	7	12	1	0	novel		TCGA-OR-A5J7-01A-11D-A29I-10	TCGA-OR-A5J7-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	00b8b899-6191-4169-91bd-a507c326e44d	70d268da-65d7-4e91-a743-63c901185bfd	.	DNAH5-182	NM_001369	exon63	c.G10654T	p.A3552S	TCCGGGCTTTCAT	.	140	37	78	0	.	1	1	0	0	0	A	13753560	C	A	13753560	3	1	7	1	0	0	0	0	1	0	0	0	4615	797	28	3	3288	3	DNAH5	5	13753560	Missense_Mutation	SNP	C	TCGA-OR-A5J7-01A-11D-A29I-10	7119781	13753560	167161700	35	1259										
ANKRD55	79722	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	55439737	55439737	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0630630630630631	7	1	1.06355738454504	2.61054994388328	0.233463816119643	0.068649885583524	0.532036613272311	0	gctggttgtggaaagccgccCagtggagtggtgtcattccc	15	10	1	0	novel		TCGA-OR-A5J7-01A-11D-A29I-10	TCGA-OR-A5J7-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	00b8b899-6191-4169-91bd-a507c326e44d	70d268da-65d7-4e91-a743-63c901185bfd	.	ANKRD55-91	NM_024669	exon7	c.G503A	p.W168X	GCCGCCCAGTGGA	.	108	23	117	0	.	0	0	0	0	0	T	55439737	C	T	55439737	4	4	7	1	0	0	0	0	0	1	0	0	681	595	21	3	1365	3	ANKRD55	5	55439737	Nonsense_Mutation	SNP	C	TCGA-OR-A5J7-01A-11D-A29I-10	41686177	55439737	125475523	36	1260										
HMMR	3161	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	162911139	162911139	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0630630630630631	7	1	1.06355738454504	2.61054994388328	0.233463816119643	0.068649885583524	0.532036613272311	0	tgaacatggtgcagctcaggAacagctaaataaaataagag	10	6	1	2	novel		TCGA-OR-A5J7-01A-11D-A29I-10	TCGA-OR-A5J7-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	00b8b899-6191-4169-91bd-a507c326e44d	70d268da-65d7-4e91-a743-63c901185bfd	.	HMMR-90	NM_001142556	exon16	c.A1850G	p.E617G	CTCAGGAACAGCT	.	257	87	159	1	.	10	9	1	0	0	G	162911139	A	G	162911139	3	3	7	1	0	0	0	0	1	0	0	0	7263	246	9	4	1912	4	HMMR	5	162911139	Missense_Mutation	SNP	A	TCGA-OR-A5J7-01A-11D-A29I-10	107471402	162911139	18004121	37	1261										
NSD1	64324	hgsc.bcm.edu	37	chr5	176722232	176722233	+	In_Frame_Ins	INS	-	-	CAA													0.0630630630630631	7	1	1.06355738454504	2.61054994388328	0.233463816119643	0.068649885583524	0.532036613272311	0	agaagttggtaaccacagagINScaaagtccctgggccctggg					novel		TCGA-OR-A5J7-01A-11D-A29I-10	TCGA-OR-A5J7-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	00b8b899-6191-4169-91bd-a507c326e44d	70d268da-65d7-4e91-a743-63c901185bfd	.	NSD1-188	NM_022455	exon23	c.7863_7864insCAA	p.E2621delinsEQ	CACAGAGCAAAGT	.	238	45	112	2	.	0	0	0	0	0	CAA	176722233	-	CAA	176722232	7	5	7	1	0	1	1	0	0	0	0	0	10698	962	34	0	7949	0	NSD1	5	176722232	In_Frame_Ins	INS	-	TCGA-OR-A5J7-01A-11D-A29I-10	13811093	176722232	4193028	38	1262										
MDC1	9656	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr6	30670918	30670918	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0630630630630631	7	1	1.06355738454504	2.61054994388328	0.233463816119643	0.068649885583524	0.532036613272311	0	gggacagaatggggattcccCgccccagggcacacaggaac	14	13	0	1	rs148600920	byfrequency	TCGA-OR-A5J7-01A-11D-A29I-10	TCGA-OR-A5J7-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	00b8b899-6191-4169-91bd-a507c326e44d	70d268da-65d7-4e91-a743-63c901185bfd	.	MDC1-273	NM_014641	exon12	c.G5828A	p.R1943Q	ATTCCCCGCCCCA	.	224	20	234	0	C|0.999;T|0.001	31	27	4	0	0	T	30670918	C	T	30670918	3	4	7	1	0	0	0	0	1	0	0	0	9431	652	23	1	457	1	MDC1	6	30670918	Missense_Mutation	SNP	C	TCGA-OR-A5J7-01A-11D-A29I-10		30670918	140444149	39	1263										
HLA-DRB1	3123	bcgsc.ca	37	chr6	32548554	32548554	+	Silent	SNP	G	G	T													0.0630630630630631	7	1	1.06355738454504	2.61054994388328	0.233463816119643	0.068649885583524	0.532036613272311	0	ctgaagtagatgaacagcccGgccccaaggaagagcaggcc					rs3830126	bycluster	TCGA-OR-A5J7-01A-11D-A29I-10	TCGA-OR-A5J7-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	00b8b899-6191-4169-91bd-a507c326e44d	70d268da-65d7-4e91-a743-63c901185bfd	.	HLA-DRB1-1	NM_002124	exon4	c.C732A	p.A244A	CAGCCCGGCCCCA	.	482	23	374	6	.	35	35	0	0	0	T	32548554	G	T	32548554	2	4	7	1	0	0	0	0	0	0	0	1	7229	1103	39	2		2	HLA-DRB1	6	32548554	Silent	SNP	G	TCGA-OR-A5J7-01A-11D-A29I-10	1877636	32548554	138566513	40	1264	13	2								
HLA-DRB1	3123	bcgsc.ca	37	chr6	32548556	32548556	+	Missense_Mutation	SNP	C	C	T													0.0630630630630631	7	1	1.06355738454504	2.61054994388328	0.233463816119643	0.068649885583524	0.532036613272311	0	gaagtagatgaacagcccggCcccaaggaagagcaggccca					rs3830125		TCGA-OR-A5J7-01A-11D-A29I-10	TCGA-OR-A5J7-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	00b8b899-6191-4169-91bd-a507c326e44d	70d268da-65d7-4e91-a743-63c901185bfd	.	HLA-DRB1-1	NM_002124	exon4	c.G730A	p.A244T	GCCCGGCCCCAAG	.	486	22	380	7	.	30	30	0	0	0	T	32548556	C	T	32548556	3	4	7	1	0	0	0	0	1	0	0	0	7229	739	26	3	82	3	HLA-DRB1	6	32548556	Missense_Mutation	SNP	C	TCGA-OR-A5J7-01A-11D-A29I-10	2	32548556	138566511	41	1265	13	2								
BAI3	577	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	69665933	69665933	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0630630630630631	7	1	1.06355738454504	2.61054994388328	0.233463816119643	0.068649885583524	0.532036613272311	0	tagttgatggacagtggcaaGagtggagttcgtggagccag	17	5	0	2	novel		TCGA-OR-A5J7-01A-11D-A29I-10	TCGA-OR-A5J7-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	00b8b899-6191-4169-91bd-a507c326e44d	70d268da-65d7-4e91-a743-63c901185bfd	.	BAI3-1148	NM_001704	exon7	c.G1213C	p.E405Q	TGGCAAGAGTGGA	.	69	16	102	0	.	0	0	0	0	0	C	69665933	G	C	69665933	3	2	7	1	0	0	0	0	1	0	0	0	1301	943	33	3	1231	3	BAI3	6	69665933	Missense_Mutation	SNP	G	TCGA-OR-A5J7-01A-11D-A29I-10	37117377	69665933	101449134	42	1266										
RPF2	84154	broad.mit.edu	37	chr6	111346769	111346769	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0630630630630631	7	1	1.06355738454504	2.61054994388328	0.233463816119643	0.068649885583524	0.532036613272311	0	ccacgagaaaaagtcaaaaaGaattaaaaaaaattgatgga	7	4	1	3	novel		TCGA-OR-A5J7-01A-11D-A29I-10	TCGA-OR-A5J7-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	00b8b899-6191-4169-91bd-a507c326e44d	70d268da-65d7-4e91-a743-63c901185bfd	.	RPF2-92	NM_032194	exon10	c.G905A	p.R302K	CAAAAAGAATTAA	.	66	9	41	4	.	21	20	0	1	0	A	111346769	G	A	111346769	3	1	7	1	0	0	0	0	1	0	0	0	13582	942	33	3	943	3	RPF2	6	111346769	Missense_Mutation	SNP	G	TCGA-OR-A5J7-01A-11D-A29I-10	41680836	111346769	59768298	43	1267										
BCLAF1	9774	hgsc.bcm.edu	37	chr6	136582203	136582396	+	Frame_Shift_Del	DEL	TGGTGGGTGCAAGTTCTGCTCTGTTGTAATCTTACTTCATATTTATTATTCCTAAAAGAGAGAGAAAAAATTAAAGATTAACAAAAGATGCGGAGAGTGAAAAGGAACCATATTAATAATTGTTCCTAAAAATGAAATAATTCACCCACCAAACCTATATCAAAAAAAATCTGTCAGAATCACAAGTTGAAATT	TGGTGGGTGCAAGTTCTGCTCTGTTGTAATCTTACTTCATATTTATTATTCCTAAAAGAGAGAGAAAAAATTAAAGATTAACAAAAGATGCGGAGAGTGAAAAGGAACCATATTAATAATTGTTCCTAAAAATGAAATAATTCACCCACCAAACCTATATCAAAAAAAATCTGTCAGAATCACAAGTTGAAATT	-													0.0630630630630631	7	1	1.06355738454504	2.61054994388328	0.233463816119643	0.068649885583524	0.532036613272311	0	caaaaatcaggtaaaaaaaaTggtgggtgcaagttctgctc					novel		TCGA-OR-A5J7-01A-11D-A29I-10	TCGA-OR-A5J7-10A-01D-A29L-10	TGGTGGGTGCAAGTTCTGCTCTGTTGTAATCTTACTTCATATTTATTATTCCTAAAAGAGAGAGAAAAAATTAAAGATTAACAAAAGATGCGGAGAGTGAAAAGGAACCATATTAATAATTGTTCCTAAAAATGAAATAATTCACCCACCAAACCTATATCAAAAAAAATCTGTCAGAATCACAAGTTGAAATT	TGGTGGGTGCAAGTTCTGCTCTGTTGTAATCTTACTTCATATTTATTATTCCTAAAAGAGAGAGAAAAAATTAAAGATTAACAAAAGATGCGGAGAGTGAAAAGGAACCATATTAATAATTGTTCCTAAAAATGAAATAATTCACCCACCAAACCTATATCAAAAAAAATCTGTCAGAATCACAAGTTGAAATT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	00b8b899-6191-4169-91bd-a507c326e44d	70d268da-65d7-4e91-a743-63c901185bfd	.	BCLAF1-228	NM_014739	exon13	c.2758_3016del	p.920_921del	AAAAAATGGTGGG	.	208	0	124	0	.	0	0	0	0	0	-	136582396	TGGTGGGTGCAAGTTCTGCTCTGTTGTAATCTTACTTCATATTTATTATTCCTAAAAGAGAGAGAAAAAATTAAAGATTAACAAAAGATGCGGAGAGTGAAAAGGAACCATATTAATAATTGTTCCTAAAAATGAAATAATTCACCCACCAAACCTATATCAAAAAAAATCTGTCAGAATCACAAGTTGAAATT	-	136582203	7	5	7	1	0	1	0	1	0	0	0	0	1384	1479	51	0		0	BCLAF1	6	136582203	Frame_Shift_Del	DEL	TGGTGGGTGCAAGTTCTGCTCTGTTGTAATCTTACTTCATATTTATTATTCCTAAAAGAGAGAGAAAAAATTAAAGATTAACAAAAGATGCGGAGAGTGAAAAGGAACCATATTAATAATTGTTCCTAAAAATGAAATAATTCACCCACCAAACCTATATCAAAAAAAATCTGTCAGAATCACAAGTTGAAATT	TCGA-OR-A5J7-01A-11D-A29I-10	25235434	136582203	34532864	44	1268										
EVX1	2128	hgsc.bcm.edu	37	chr7	27282894	27282894	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0630630630630631	7	1	1.06355738454504	2.61054994388328	0.233463816119643	0.068649885583524	0.532036613272311	0	cagcgcggcggggccgggcgCcgagccccaggtagctgggg	21	14	0	0	novel		TCGA-OR-A5J7-01A-11D-A29I-10	TCGA-OR-A5J7-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	00b8b899-6191-4169-91bd-a507c326e44d	70d268da-65d7-4e91-a743-63c901185bfd	.	EVX1-91	NM_001989	exon1	c.C245T	p.A82V	CGGGCGCCGAGCC	.	20	11	2	0	.	0	0	0	0	0	T	27282894	C	T	27282894	3	4	7	1	0	0	0	0	1	0	0	0	5307	739	26	3	247	3	EVX1	7	27282894	Missense_Mutation	SNP	C	TCGA-OR-A5J7-01A-11D-A29I-10		27282894	131855769	45	1269										
EPDR1	54749	hgsc.bcm.edu	37	chr7	37960577	37960577	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0630630630630631	7	1	1.06355738454504	2.61054994388328	0.233463816119643	0.068649885583524	0.532036613272311	0	cccctccgcaccgtcccgggCgccctgggtgcctggctgct	13	20	0	0	rs147877097		TCGA-OR-A5J7-01A-11D-A29I-10	TCGA-OR-A5J7-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	00b8b899-6191-4169-91bd-a507c326e44d	70d268da-65d7-4e91-a743-63c901185bfd	.	EPDR1-91	NM_001242946	exon1	c.C36A	p.G12G	CCCGGGCGCCCTG	.	37	25	1	0	C|0.995;A|0.005	13	4	9	0	0	A	37960577	C	A	37960577	2	1	7	1	0	0	0	0	0	0	0	1	5176	755	27	2		2	EPDR1	7	37960577	Silent	SNP	C	TCGA-OR-A5J7-01A-11D-A29I-10	10677683	37960577	121178086	46	1270										
AUTS2	26053	broad.mit.edu	37	chr7	70229821	70229821	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0630630630630631	7	1	1.06355738454504	2.61054994388328	0.233463816119643	0.068649885583524	0.532036613272311	0	ctctgcctccccgttcccccTctccctgcccaaccacagcc	4	25	2	0	novel		TCGA-OR-A5J7-01A-11D-A29I-10	TCGA-OR-A5J7-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	00b8b899-6191-4169-91bd-a507c326e44d	70d268da-65d7-4e91-a743-63c901185bfd	.	AUTS2-92	NM_001127231	exon8	c.T1298C	p.L433P	TCCCCCTCTCCCT	.	62	11	55	10	.	4	4	0	0	0	C	70229821	T	C	70229821	3	2	7	1	0	0	0	0	1	0	0	0	1226	1551	54	4	1473	4	AUTS2	7	70229821	Missense_Mutation	SNP	T	TCGA-OR-A5J7-01A-11D-A29I-10	32269244	70229821	88908842	47	1271										
CYP3A43	64816	broad.mit.edu;bcgsc.ca	37	chr7	99441808	99441808	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0630630630630631	7	1	1.06355738454504	2.61054994388328	0.233463816119643	0.068649885583524	0.532036613272311	0	atgctggtcatcatggatccCgacatgatcaaaacagtgtt	9	9	3	1	novel		TCGA-OR-A5J7-01A-11D-A29I-10	TCGA-OR-A5J7-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	00b8b899-6191-4169-91bd-a507c326e44d	70d268da-65d7-4e91-a743-63c901185bfd	.	CYP3A43-92	NM_057096	exon4	c.C261T	p.P87P	GGATCCCGACATG	.	165	7	210	0	.	0	0	0	0	0	T	99441808	C	T	99441808	2	4	7	1	0	0	0	0	0	0	0	1	4185	639	23	1		1	CYP3A43	7	99441808	Silent	SNP	C	TCGA-OR-A5J7-01A-11D-A29I-10	29211987	99441808	59696855	48	1272										
HTR5A	3361	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr7	154862761	154862761	+	Frame_Shift_Del	DEL	T	T	-													0.0630630630630631	7	1	1.06355738454504	2.61054994388328	0.233463816119643	0.068649885583524	0.532036613272311	0	caccttgctgggctttctggTggcggcgacgttcgcctgga					novel		TCGA-OR-A5J7-01A-11D-A29I-10	TCGA-OR-A5J7-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	00b8b899-6191-4169-91bd-a507c326e44d	70d268da-65d7-4e91-a743-63c901185bfd	.	HTR5A-155	NM_024012	exon1	c.152delT	p.V51fs	TTCTGGTGGCGGC	.	66	19	94	0	.	0	0	0	0	0	-	154862761	T	-	154862761	7	5	7	1	0	1	0	1	0	0	0	0	7471	1696	59	0	154	0	HTR5A	7	154862761	Frame_Shift_Del	DEL	T	TCGA-OR-A5J7-01A-11D-A29I-10	55420953	154862761	4275902	49	1273										
PKHD1L1	93035	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr8	110520019	110520019	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0630630630630631	7	1	1.06355738454504	2.61054994388328	0.233463816119643	0.068649885583524	0.532036613272311	0	ctcaagcagaatatgaatggGacggaaacagccaagtagga	12	7	1	2	novel		TCGA-OR-A5J7-01A-11D-A29I-10	TCGA-OR-A5J7-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	00b8b899-6191-4169-91bd-a507c326e44d	70d268da-65d7-4e91-a743-63c901185bfd	.	PKHD1L1-145	NM_177531	exon69	c.G11122T	p.D3708Y	GAATGGGACGGAA	.	189	73	257	1	.	0	0	0	0	0	T	110520019	G	T	110520019	3	4	7	1	0	0	0	0	1	0	0	0	12001	1174	41	3	11396	3	PKHD1L1	8	110520019	Missense_Mutation	SNP	G	TCGA-OR-A5J7-01A-11D-A29I-10		110520019	35844003	50	1274										
MURC	347273	broad.mit.edu;bcgsc.ca	37	chr9	103340763	103340763	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0630630630630631	7	1	1.06355738454504	2.61054994388328	0.233463816119643	0.068649885583524	0.532036613272311	0	ggtggagaagcaacaaattcAtgttaaaaaagttgaagtca	10	4	2	2	novel		TCGA-OR-A5J7-01A-11D-A29I-10	TCGA-OR-A5J7-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	00b8b899-6191-4169-91bd-a507c326e44d	70d268da-65d7-4e91-a743-63c901185bfd	.	MURC-69	NM_001018116	exon1	c.A338T	p.H113L	AAATTCATGTTAA	.	172	61	102	2	.	0	0	0	0	0	T	103340763	A	T	103340763	3	4	7	1	0	0	0	0	1	0	0	0	10015	217	8	5	340	5	MURC	9	103340763	Missense_Mutation	SNP	A	TCGA-OR-A5J7-01A-11D-A29I-10		103340763	37872668	51	1275										
COL27A1	85301	bcgsc.ca	37	chr9	116930100	116930100	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0630630630630631	7	1	1.06355738454504	2.61054994388328	0.233463816119643	0.068649885583524	0.532036613272311	0	tccaggctcccacgggcaccGtcattcctgccgccttgggc	11	18	1	0	rs2567707	byfrequency	TCGA-OR-A5J7-01A-11D-A29I-10	TCGA-OR-A5J7-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	00b8b899-6191-4169-91bd-a507c326e44d	70d268da-65d7-4e91-a743-63c901185bfd	.	COL27A1-94	NM_032888	exon3	c.G265A	p.V89I	GGCACCGTCATTC	.	88	5	86	0	G|0.811;A|0.189	0	0	0	0	0	A	116930100	G	A	116930100	3	1	7	1	0	0	0	0	1	0	0	0	3691	1145	40	1	275	1	COL27A1	9	116930100	Missense_Mutation	SNP	G	TCGA-OR-A5J7-01A-11D-A29I-10	13589337	116930100	24283331	52	1276										
TNC	3371	broad.mit.edu	37	chr9	117853265	117853265	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0630630630630631	7	1	1.06355738454504	2.61054994388328	0.233463816119643	0.068649885583524	0.532036613272311	0	agggcaaggaaagcaagaaaGacacctgccaacagctgagt	12	9	0	3	novel		TCGA-OR-A5J7-01A-11D-A29I-10	TCGA-OR-A5J7-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	00b8b899-6191-4169-91bd-a507c326e44d	70d268da-65d7-4e91-a743-63c901185bfd	.	TNC-517	NM_002160	exon2	c.C33A	p.V11V	AAGAAAGACACCT	.	42	4	39	0	.	1	1	0	0	0	T	117853265	G	T	117853265	2	4	7	1	0	0	0	0	0	0	0	1	16307	929	33	3		3	TNC	9	117853265	Silent	SNP	G	TCGA-OR-A5J7-01A-11D-A29I-10	923165	117853265	23360166	53	1277										
ITIH5	80760	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	7618777	7618777	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0630630630630631	7	1	1.06355738454504	2.61054994388328	0.233463816119643	0.068649885583524	0.532036613272311	0	ggcacatctgtcttcaggatGatgaatttcttactgttgct	9	8	4	2	novel		TCGA-OR-A5J7-01A-11D-A29I-10	TCGA-OR-A5J7-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	00b8b899-6191-4169-91bd-a507c326e44d	70d268da-65d7-4e91-a743-63c901185bfd	.	ITIH5-92	NM_001001851	exon10	c.C1617G	p.I539M	CAGGATGATGAAT	.	205	23	194	1	.	4	4	0	0	0	C	7618777	G	C	7618777	3	2	7	1	0	0	0	0	1	0	0	0	7928	1280	45	3	1354	3	ITIH5	10	7618777	Missense_Mutation	SNP	G	TCGA-OR-A5J7-01A-11D-A29I-10		7618777	127915970	54	1278										
HNRNPF	3185	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr10	43882457	43882457	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0630630630630631	7	1	1.06355738454504	2.61054994388328	0.233463816119643	0.068649885583524	0.532036613272311	0	ttgtacggcaggcccctcatGtggacacagtggcctgtggt	14	11	1	0	novel		TCGA-OR-A5J7-01A-11D-A29I-10	TCGA-OR-A5J7-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	00b8b899-6191-4169-91bd-a507c326e44d	70d268da-65d7-4e91-a743-63c901185bfd	.	HNRNPF-22	NM_001098204	exon4	c.C876G	p.H292Q	CCTCATGTGGACA	.	83	17	127	0	.	150	118	31	0	1	C	43882457	G	C	43882457	3	2	7	1	0	0	0	0	1	0	0	0	7286	1368	48	3	375	3	HNRNPF	10	43882457	Missense_Mutation	SNP	G	TCGA-OR-A5J7-01A-11D-A29I-10	36263680	43882457	91652290	55	1279										
TBC1D12	23232	hgsc.bcm.edu	37	chr10	96163039	96163039	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0630630630630631	7	1	1.06355738454504	2.61054994388328	0.233463816119643	0.068649885583524	0.532036613272311	0	agcgactcgggggacagcccCgccagcagctgcagcagtag	15	14	0	0	rs2477534	byfrequency	TCGA-OR-A5J7-01A-11D-A29I-10	TCGA-OR-A5J7-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	00b8b899-6191-4169-91bd-a507c326e44d	70d268da-65d7-4e91-a743-63c901185bfd	.	TBC1D12-68	NM_015188	exon1	c.C669G	p.P223P	CAGCCCCGCCAGC	.	35	18	2	0	C|0.339;G|0.661	1	0	1	0	0	G	96163039	C	G	96163039	2	3	7	1	0	0	0	0	0	0	0	1	15638	639	23	2		2	TBC1D12	10	96163039	Silent	SNP	C	TCGA-OR-A5J7-01A-11D-A29I-10	52280582	96163039	39371708	56	1280										
SFXN4	119559	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr10	120923681	120923681	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0630630630630631	7	1	1.06355738454504	2.61054994388328	0.233463816119643	0.068649885583524	0.532036613272311	0	tgtaggatctaataattctgTccattgaagaaatcgtcgaa	8	6	2	2	novel		TCGA-OR-A5J7-01A-11D-A29I-10	TCGA-OR-A5J7-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	00b8b899-6191-4169-91bd-a507c326e44d	70d268da-65d7-4e91-a743-63c901185bfd	.	SFXN4-91	NM_213649	exon2	c.A139T	p.T47S	ATTCTGTCCATTG	.	358	108	224	0	.	54	33	21	0	0	A	120923681	T	A	120923681	3	1	7	1	0	0	0	0	1	0	0	0	14232	1667	58	5	926	5	SFXN4	10	120923681	Missense_Mutation	SNP	T	TCGA-OR-A5J7-01A-11D-A29I-10	24760642	120923681	14611066	57	1281										
PRDX3	10935	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr10	120931958	120931958	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0630630630630631	7	1	1.06355738454504	2.61054994388328	0.233463816119643	0.068649885583524	0.532036613272311	0	ggaaatctgcttagttaagtCtgacaagagtgcgatgttca	11	6	3	2	novel		TCGA-OR-A5J7-01A-11D-A29I-10	TCGA-OR-A5J7-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	00b8b899-6191-4169-91bd-a507c326e44d	70d268da-65d7-4e91-a743-63c901185bfd	.	PRDX3-90	NM_006793	exon5	c.G487C	p.D163H	TTAAGTCTGACAA	.	198	64	213	0	.	1294	824	470	0	0	G	120931958	C	G	120931958	3	3	7	1	0	0	0	0	1	0	0	0	12498	913	32	3	295	3	PRDX3	10	120931958	Missense_Mutation	SNP	C	TCGA-OR-A5J7-01A-11D-A29I-10	8277	120931958	14602789	58	1282										
MUC5B	727897	broad.mit.edu	37	chr11	1270602	1270602	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0630630630630631	7	1	1.06355738454504	2.61054994388328	0.233463816119643	0.068649885583524	0.532036613272311	0	atccgtgcggccggaggggcCgtctgtgagcagcccctggg	18	13	1	1	rs79971120		TCGA-OR-A5J7-01A-11D-A29I-10	TCGA-OR-A5J7-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	00b8b899-6191-4169-91bd-a507c326e44d	70d268da-65d7-4e91-a743-63c901185bfd	.	.	NM_002458	exon31	c.C12492A	p.A4164A	AGGGGCCGTCTGT	.	396	7	271	0	C|0.750;A|0.250	0	0	0	0	0	A	1270602	C	A	1270602	2	1	7	1	0	0	0	0	0	0	0	1	10007	639	23	2		2	MUC5B	11	1270602	Silent	SNP	C	TCGA-OR-A5J7-01A-11D-A29I-10		1270602	133735914	59	1283										
TRIM6-TRIM34	445372	bcgsc.ca	37	chr11	5624521	5624521	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0630630630630631	7	1	1.06355738454504	2.61054994388328	0.233463816119643	0.068649885583524	0.532036613272311	0	gaaatcagggttgggcaggcAggagccaggagagtagctac	17	7	1	1	rs61758095	byfrequency	TCGA-OR-A5J7-01A-11D-A29I-10	TCGA-OR-A5J7-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	00b8b899-6191-4169-91bd-a507c326e44d	70d268da-65d7-4e91-a743-63c901185bfd	.	TRIM6-TRIM34-45	NM_001003819	exon2	c.A63C	p.A21A	GCAGGCAGGAGCC	.	193	8	379	3	A|0.982;C|0.018	2	2	0	0	0	C	5624521	A	C	5624521	2	2	7	1	0	0	0	0	0	0	0	1	16572	175	7	5		5	TRIM6-TRIM34	11	5624521	Silent	SNP	A	TCGA-OR-A5J7-01A-11D-A29I-10	4353919	5624521	129381995	60	1284										
OR56A5	390084	bcgsc.ca	37	chr11	5989416	5989416	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0630630630630631	7	1	1.06355738454504	2.61054994388328	0.233463816119643	0.068649885583524	0.532036613272311	0	aaactgttcatgatgaacacCtgaaggaagcaggcagggaa	12	7	1	3	novel		TCGA-OR-A5J7-01A-11D-A29I-10	TCGA-OR-A5J7-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	00b8b899-6191-4169-91bd-a507c326e44d	70d268da-65d7-4e91-a743-63c901185bfd	.	.	NM_001146033	exon1	c.G309T	p.Q103H	GAACACCTGAAGG	.	122	6	233	0	.	0	0	0	0	0	A	5989416	C	A	5989416	3	1	7	1	0	0	0	0	1	0	0	0	11165	680	24	3	634	3	OR56A5	11	5989416	Missense_Mutation	SNP	C	TCGA-OR-A5J7-01A-11D-A29I-10	364895	5989416	129017100	61	1285										
OR56A1	120796	broad.mit.edu;bcgsc.ca	37	chr11	6048372	6048372	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0630630630630631	7	1	1.06355738454504	2.61054994388328	0.233463816119643	0.068649885583524	0.532036613272311	0	agagcctggacacagacaagTtggcacagatgcagttctca	11	10	1	3	rs139926831		TCGA-OR-A5J7-01A-11D-A29I-10	TCGA-OR-A5J7-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	00b8b899-6191-4169-91bd-a507c326e44d	70d268da-65d7-4e91-a743-63c901185bfd	.	OR56A1-115	NM_001001917	exon1	c.A563C	p.N188T	GACAAGTTGGCAC	.	105	5	186	2	T|1.000;G|0.000	0	0	0	0	0	G	6048372	T	G	6048372	3	3	7	1	0	0	0	0	1	0	0	0	11162	1725	60	5	397	5	OR56A1	11	6048372	Missense_Mutation	SNP	T	TCGA-OR-A5J7-01A-11D-A29I-10	58956	6048372	128958144	62	1286										
CCDC73	493860	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	32635661	32635661	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0630630630630631	7	1	1.06355738454504	2.61054994388328	0.233463816119643	0.068649885583524	0.532036613272311	0	tgagttaggtttcaccaacaTagacatactatggacatttt	7	7	1	2	novel		TCGA-OR-A5J7-01A-11D-A29I-10	TCGA-OR-A5J7-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	00b8b899-6191-4169-91bd-a507c326e44d	70d268da-65d7-4e91-a743-63c901185bfd	.	CCDC73-91	NM_001008391	exon16	c.C2203C	p.L735L	CCAACATAGACAT	.	51	17	40	0	.	0	0	0	0	0	G	32635661	T	G	32635661	2	3	7	1	0	0	0	0	0	0	0	1	2852	1406	49	5		5	CCDC73	11	32635661	Silent	SNP	T	TCGA-OR-A5J7-01A-11D-A29I-10	26587289	32635661	102370855	63	1287										
NR1H3	10062	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	47282859	47282859	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0630630630630631	7	1	1.06355738454504	2.61054994388328	0.233463816119643	0.068649885583524	0.532036613272311	0	gaggaggaacaggctcatgcCacatccttgccccccagggc	12	15	1	0	novel		TCGA-OR-A5J7-01A-11D-A29I-10	TCGA-OR-A5J7-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	00b8b899-6191-4169-91bd-a507c326e44d	70d268da-65d7-4e91-a743-63c901185bfd	.	NR1H3-228	NM_001251934	exon5	c.C585T	p.A195A	TCATGCCACATCC	.	204	128	210	0	.	10	6	4	0	0	T	47282859	C	T	47282859	2	4	7	1	0	0	0	0	0	0	0	1	10647	581	21	3		3	NR1H3	11	47282859	Silent	SNP	C	TCGA-OR-A5J7-01A-11D-A29I-10	14647198	47282859	87723657	64	1288										
CST6	1474	hgsc.bcm.edu	37	chr11	65779590	65779590	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0630630630630631	7	1	1.06355738454504	2.61054994388328	0.233463816119643	0.068649885583524	0.532036613272311	0	ctcctggcgctgccacgcgaCgcccgggcccggccgcagga	15	19	0	0	rs1131544		TCGA-OR-A5J7-01A-11D-A29I-10	TCGA-OR-A5J7-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	00b8b899-6191-4169-91bd-a507c326e44d	70d268da-65d7-4e91-a743-63c901185bfd	.	CST6-523	NM_001323	exon1	c.C75T	p.D25D	ACGCGACGCCCGG	.	8	6	0	0	C|0.921;T|0.079	0	0	0	0	0	T	65779590	C	T	65779590	2	4	7	1	0	0	0	0	0	0	0	1	3982	535	19	1		1	CST6	11	65779590	Silent	SNP	C	TCGA-OR-A5J7-01A-11D-A29I-10	18496731	65779590	69226926	65	1289										
GAL3ST3	89792	hgsc.bcm.edu	37	chr11	65810209	65810209	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0630630630630631	7	1	1.06355738454504	2.61054994388328	0.233463816119643	0.068649885583524	0.532036613272311	0	accttgcggctgggctgccaCggctgcagctgcttggtgcg	16	13	0	0	rs61895584	byfrequency	TCGA-OR-A5J7-01A-11D-A29I-10	TCGA-OR-A5J7-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	00b8b899-6191-4169-91bd-a507c326e44d	70d268da-65d7-4e91-a743-63c901185bfd	.	GAL3ST3-91	NM_033036	exon3	c.G1065A	p.P355P	CTGCCACGGCTGC	.	5	5	0	0	C|0.233;T|0.767	0	0	0	0	0	T	65810209	C	T	65810209	2	4	7	1	0	0	0	0	0	0	0	1	6219	523	19	1		1	GAL3ST3	11	65810209	Silent	SNP	C	TCGA-OR-A5J7-01A-11D-A29I-10	30619	65810209	69196307	66	1290										
OR8B3	390271	ucsc.edu	37	chr11	124267177	124267177	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0630630630630631	7	1	1.06355738454504	2.61054994388328	0.233463816119643	0.068649885583524	0.532036613272311	0	acaggaaaaagaggggttgcTggaactctggatgatctgtt	14	5	2	2	rs61910862		TCGA-OR-A5J7-01A-11D-A29I-10	TCGA-OR-A5J7-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	00b8b899-6191-4169-91bd-a507c326e44d	70d268da-65d7-4e91-a743-63c901185bfd	.	OR8B3-70	NM_001005467	exon1	c.A71G	p.Q24R	GGTTGCTGGAACT	.	159	35	181	6	T|0.188;C|0.812	0	0	0	0	0	C	124267177	T	C	124267177	3	2	7	1	0	0	0	0	1	0	0	0	11257	1580	55	4	872	4	OR8B3	11	124267177	Missense_Mutation	SNP	T	TCGA-OR-A5J7-01A-11D-A29I-10	58456968	124267177	10739339	67	1291										
LRTM2	654429	broad.mit.edu	37	chr12	1940199	1940199	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0630630630630631	7	1	1.06355738454504	2.61054994388328	0.233463816119643	0.068649885583524	0.532036613272311	0	gcctggaggtggactgcagtGgccttggcctcaccacggtg	16	12	1	0	rs140244300	byfrequency	TCGA-OR-A5J7-01A-11D-A29I-10	TCGA-OR-A5J7-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	00b8b899-6191-4169-91bd-a507c326e44d	70d268da-65d7-4e91-a743-63c901185bfd	.	LRTM2-135	NM_001039029	exon4	c.G166A	p.G56S	TGCAGTGGCCTTG	.	79	3	78	0	G|0.999;A|0.001	0	0	0	0	0	A	1940199	G	A	1940199	3	1	7	1	0	0	0	0	1	0	0	0	9072	1348	47	3	172	3	LRTM2	12	1940199	Missense_Mutation	SNP	G	TCGA-OR-A5J7-01A-11D-A29I-10		1940199	131911696	68	1292										
PAN2	9924	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	56712211	56712211	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0630630630630631	7	1	1.06355738454504	2.61054994388328	0.233463816119643	0.068649885583524	0.532036613272311	0	tcatgggtttccccttgaatCttcaggtctggggtaagtaa	11	8	4	1	novel		TCGA-OR-A5J7-01A-11D-A29I-10	TCGA-OR-A5J7-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	00b8b899-6191-4169-91bd-a507c326e44d	70d268da-65d7-4e91-a743-63c901185bfd	.	PAN2-702	NM_001127460	exon25	c.G3384T	p.K1128N	TTGAATCTTCAGG	.	371	59	281	0	.	2	2	0	0	0	A	56712211	C	A	56712211	3	1	7	1	0	0	0	0	1	0	0	0	11443	912	32	3	232	3	PAN2	12	56712211	Missense_Mutation	SNP	C	TCGA-OR-A5J7-01A-11D-A29I-10	54772012	56712211	77139684	69	1293										
GAS2L3	283431	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	101017613	101017613	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0630630630630631	7	1	1.06355738454504	2.61054994388328	0.233463816119643	0.068649885583524	0.532036613272311	0	ttagtattccaaaaagcaaaGaaaaacagggacgtccacca	7	9	0	1	novel		TCGA-OR-A5J7-01A-11D-A29I-10	TCGA-OR-A5J7-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	00b8b899-6191-4169-91bd-a507c326e44d	70d268da-65d7-4e91-a743-63c901185bfd	.	GAS2L3-227	NM_174942	exon10	c.G1030C	p.E344Q	AGCAAAGAAAAAC	.	154	45	86	0	.	9	6	3	0	0	C	101017613	G	C	101017613	3	2	7	1	0	0	0	0	1	0	0	0	6268	943	33	3	1060	3	GAS2L3	12	101017613	Missense_Mutation	SNP	G	TCGA-OR-A5J7-01A-11D-A29I-10	44305402	101017613	32834282	70	1294										
WBP4	11193	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr13	41642838	41642838	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0630630630630631	7	1	1.06355738454504	2.61054994388328	0.233463816119643	0.068649885583524	0.532036613272311	0	ggtagaaggcataacctctgAgggttaccattactattatg	10	7	1	2	novel		TCGA-OR-A5J7-01A-11D-A29I-10	TCGA-OR-A5J7-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	00b8b899-6191-4169-91bd-a507c326e44d	70d268da-65d7-4e91-a743-63c901185bfd	.	WBP4-289	NM_007187	exon5	c.A404C	p.E135A	CCTCTGAGGGTTA	.	16	11	69	0	.	3	1	2	0	0	C	41642838	A	C	41642838	3	2	7	1	0	0	0	0	1	0	0	0	17299	304	11	5	422	5	WBP4	13	41642838	Missense_Mutation	SNP	A	TCGA-OR-A5J7-01A-11D-A29I-10		41642838	73527040	71	1295										
RCBTB1	55213	bcgsc.ca	37	chr13	50123622	50123622	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0630630630630631	7	1	1.06355738454504	2.61054994388328	0.233463816119643	0.068649885583524	0.532036613272311	0	aggaggcgccacgagacggcGggagtggcaaagcaggcaaa	18	9	0	1	rs3751384	byfrequency	TCGA-OR-A5J7-01A-11D-A29I-10	TCGA-OR-A5J7-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	00b8b899-6191-4169-91bd-a507c326e44d	70d268da-65d7-4e91-a743-63c901185bfd	.	RCBTB1-91	NM_018191	exon9	c.C1017G	p.P339P	GACGGCGGGAGTG	.	69	4	188	0	G|0.473;C|0.527	6	6	0	0	0	C	50123622	G	C	50123622	2	2	7	1	0	0	0	0	0	0	0	1	13206	1103	39	2		2	RCBTB1	13	50123622	Silent	SNP	G	TCGA-OR-A5J7-01A-11D-A29I-10	8480784	50123622	65046256	72	1296										
GPR183	1880	bcgsc.ca	37	chr13	99948178	99948178	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0630630630630631	7	1	1.06355738454504	2.61054994388328	0.233463816119643	0.068649885583524	0.532036613272311	0	gtaaaaagtatatcagaaatCaccaaatttgttgaatagag	7	4	2	3	rs2230342	byfrequency	TCGA-OR-A5J7-01A-11D-A29I-10	TCGA-OR-A5J7-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	00b8b899-6191-4169-91bd-a507c326e44d	70d268da-65d7-4e91-a743-63c901185bfd	.	GPR183-522	NM_004951	exon2	c.G222T	p.V74V	AGAAATCACCAAA	.	139	7	373	1	C|0.698;A|0.302	0	0	0	0	0	A	99948178	C	A	99948178	2	1	7	1	0	0	0	0	0	0	0	1	6698	813	29	3		3	GPR183	13	99948178	Silent	SNP	C	TCGA-OR-A5J7-01A-11D-A29I-10	49824556	99948178	15221700	73	1297										
GRTP1	79774	broad.mit.edu	37	chr13	113980044	113980044	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0630630630630631	7	1	1.06355738454504	2.61054994388328	0.233463816119643	0.068649885583524	0.532036613272311	0	cttaaacttatcgcaaatgtCtggaacgctggtggcttcca	9	10	1	0	novel		TCGA-OR-A5J7-01A-11D-A29I-10	TCGA-OR-A5J7-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	00b8b899-6191-4169-91bd-a507c326e44d	70d268da-65d7-4e91-a743-63c901185bfd	.	GRTP1-90	NM_024719	exon7	c.G853T	p.D285Y	AAATGTCTGGAAC	.	58	4	150	0	.	8	8	0	0	0	A	113980044	C	A	113980044	3	1	7	1	0	0	0	0	1	0	0	0	6831	913	32	3	165	3	GRTP1	13	113980044	Missense_Mutation	SNP	C	TCGA-OR-A5J7-01A-11D-A29I-10	14031866	113980044	1189834	74	1298										
GAS6	2621	ucsc.edu;bcgsc.ca	37	chr13	114525079	114525079	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0630630630630631	7	1	1.06355738454504	2.61054994388328	0.233463816119643	0.068649885583524	0.532036613272311	0	tcaccgtccctcagcgagacGgtgaccacgtgctcttggcc	11	16	3	2	rs34975371	byfrequency	TCGA-OR-A5J7-01A-11D-A29I-10	TCGA-OR-A5J7-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	00b8b899-6191-4169-91bd-a507c326e44d	70d268da-65d7-4e91-a743-63c901185bfd	.	GAS6-650	NM_000820	exon14	c.C1734T	p.T578T	CGAGACGGTGACC	.	49	5	143	1	G|0.968;A|0.032	10	10	0	0	0	A	114525079	G	A	114525079	2	1	7	1	0	0	0	0	0	0	0	1	6269	1103	39	1		1	GAS6	13	114525079	Silent	SNP	G	TCGA-OR-A5J7-01A-11D-A29I-10	545035	114525079	644799	75	1299										
TOMM20L	387990	bcgsc.ca	37	chr14	58863051	58863051	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0630630630630631	7	1	1.06355738454504	2.61054994388328	0.233463816119643	0.068649885583524	0.532036613272311	0	ctcaaaaggctgaggagcagGgcacgcaggtgcagtgcttt	15	9	1	1	rs140260851	byfrequency	TCGA-OR-A5J7-01A-11D-A29I-10	TCGA-OR-A5J7-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	00b8b899-6191-4169-91bd-a507c326e44d	70d268da-65d7-4e91-a743-63c901185bfd	.	TOMM20L-90	NM_207377	exon2	c.G172A	p.G58S	GAGCAGGGCACGC	.	223	7	332	1	G|0.993;A|0.007	0	0	0	0	0	A	58863051	G	A	58863051	3	1	7	1	0	0	0	0	1	0	0	0	16392	1232	43	3	178	3	TOMM20L	14	58863051	Missense_Mutation	SNP	G	TCGA-OR-A5J7-01A-11D-A29I-10		58863051	48486489	76	1300										
SERPINA1	5265	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr14	94845822	94845822	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0630630630630631	7	1	1.06355738454504	2.61054994388328	0.233463816119643	0.068649885583524	0.532036613272311	0	ttggagagcttcaggggtgcCtcctctgtgaccccggagag	15	11	2	3	novel		TCGA-OR-A5J7-01A-11D-A29I-10	TCGA-OR-A5J7-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	00b8b899-6191-4169-91bd-a507c326e44d	70d268da-65d7-4e91-a743-63c901185bfd	.	SERPINA1-226	NM_001127701	exon6	c.G1044A	p.E348E	GGGTGCCTCCTCT	.	92	37	131	0	.	2	2	0	0	0	T	94845822	C	T	94845822	2	4	7	1	0	0	0	0	0	0	0	1	14121	680	24	3		3	SERPINA1	14	94845822	Silent	SNP	C	TCGA-OR-A5J7-01A-11D-A29I-10	35982771	94845822	12503718	77	1301										
MAGEL2	54551	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	23890728	23890728	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0630630630630631	7	1	1.06355738454504	2.61054994388328	0.233463816119643	0.068649885583524	0.532036613272311	0	ggtctatagaagaggccctgCattctcctgatggagtcatc	11	10	3	3	novel		TCGA-OR-A5J7-01A-11D-A29I-10	TCGA-OR-A5J7-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	00b8b899-6191-4169-91bd-a507c326e44d	70d268da-65d7-4e91-a743-63c901185bfd	.	.	NM_019066	exon1	c.G2162A	p.C721Y	GCCCTGCATTCTC	.	93	35	97	1	.	0	0	0	0	0	T	23890728	C	T	23890728	3	4	7	1	0	0	0	0	1	0	0	0	9217	710	25	3	1591	3	MAGEL2	15	23890728	Missense_Mutation	SNP	C	TCGA-OR-A5J7-01A-11D-A29I-10		23890728	78640664	78	1302										
LTK	4058	hgsc.bcm.edu	37	chr15	41803754	41803754	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0630630630630631	7	1	1.06355738454504	2.61054994388328	0.233463816119643	0.068649885583524	0.532036613272311	0	ctccggccgccaccagcaacGgttccagctcgccagcgcgc	11	20	0	0	rs55739813	byfrequency	TCGA-OR-A5J7-01A-11D-A29I-10	TCGA-OR-A5J7-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	00b8b899-6191-4169-91bd-a507c326e44d	70d268da-65d7-4e91-a743-63c901185bfd	.	LTK-1377	NM_001135685	exon6	c.C680T	p.P227L	AGCAACGGTTCCA	.	6	6	0	0	G|0.962;A|0.038	0	0	0	0	0	A	41803754	G	A	41803754	3	1	7	1	0	0	0	0	1	0	0	0	9107	1116	39	1	1974	1	LTK	15	41803754	Missense_Mutation	SNP	G	TCGA-OR-A5J7-01A-11D-A29I-10	17913026	41803754	60727638	79	1303										
DECR2	26063	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	455024	455024	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0630630630630631	7	1	1.06355738454504	2.61054994388328	0.233463816119643	0.068649885583524	0.532036613272311	0	gattgctgagattttcatgcGgtgagactgctctgtgtccc	12	9	2	2	rs201409624		TCGA-OR-A5J7-01A-11D-A29I-10	TCGA-OR-A5J7-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	00b8b899-6191-4169-91bd-a507c326e44d	70d268da-65d7-4e91-a743-63c901185bfd	.	DECR2-90	NM_020664	exon2	c.G149A	p.R50Q	TCATGCGGTGAGA	.	105	18	127	0	G|0.999;A|0.000	6	1	5	0	0	A	455024	G	A	455024	3	1	7	1	0	0	0	0	1	0	0	0	4389	1130	39	1	155	1	DECR2	16	455024	Missense_Mutation	SNP	G	TCGA-OR-A5J7-01A-11D-A29I-10		455024	89899729	80	1304										
ZNF646	9726	broad.mit.edu	37	chr16	31092943	31092943	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0630630630630631	7	1	1.06355738454504	2.61054994388328	0.233463816119643	0.068649885583524	0.532036613272311	0	cctttcacctgcccccattgTccccgccacttccgccgccg	6	23	1	0	rs200049061		TCGA-OR-A5J7-01A-11D-A29I-10	TCGA-OR-A5J7-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	00b8b899-6191-4169-91bd-a507c326e44d	70d268da-65d7-4e91-a743-63c901185bfd	.	ZNF646-153	NM_014699	exon2	c.T5298C	p.C1766C	CCATTGTCCCCGC	.	62	25	28	4	.	5	5	0	0	0	C	31092943	T	C	31092943	2	2	7	1	0	0	0	0	0	0	0	1	18099	1673	58	4		4	ZNF646	16	31092943	Silent	SNP	T	TCGA-OR-A5J7-01A-11D-A29I-10	30637919	31092943	59261810	81	1305										
ZFPM1	161882	hgsc.bcm.edu	37	chr16	88599697	88599705	+	In_Frame_Del	DEL	AGCCTCTGG	AGCCTCTGG	-													0.0630630630630631	7	1	1.06355738454504	2.61054994388328	0.233463816119643	0.068649885583524	0.532036613272311	0	caacggagaggccagagcggAgcctctggcccagaatggag					novel		TCGA-OR-A5J7-01A-11D-A29I-10	TCGA-OR-A5J7-10A-01D-A29L-10	AGCCTCTGG	AGCCTCTGG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	00b8b899-6191-4169-91bd-a507c326e44d	70d268da-65d7-4e91-a743-63c901185bfd	.	ZFPM1-90	NM_153813	exon10	c.1331_1339del	p.444_447del	GAGCGGAGCCTCT	.	15	0	1	0	.	0	0	0	0	0	-	88599705	AGCCTCTGG	-	88599697	7	5	7	1	0	1	0	1	0	0	0	0	17694	304	11	0	1369	0	ZFPM1	16	88599697	In_Frame_Del	DEL	AGCCTCTGG	TCGA-OR-A5J7-01A-11D-A29I-10	57506754	88599697	1755056	82	1306										
SPIRE2	84501	broad.mit.edu	37	chr16	89917049	89917049	+	Frame_Shift_Del	DEL	G	G	-													0.0630630630630631	7	1	1.06355738454504	2.61054994388328	0.233463816119643	0.068649885583524	0.532036613272311	0	gctgcgggccttcctggccaGggtccgggaggccaaggagg					novel		TCGA-OR-A5J7-01A-11D-A29I-10	TCGA-OR-A5J7-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	00b8b899-6191-4169-91bd-a507c326e44d	70d268da-65d7-4e91-a743-63c901185bfd	.	SPIRE2-90	NM_032451	exon3	c.626delG	p.R209fs	TGGCCAGGGTCCG	.	6	2	10	0	.	0	0	0	0	0	-	89917049	G	-	89917049	7	5	7	1	0	1	0	1	0	0	0	0	15109	1000	35	0	636	0	SPIRE2	16	89917049	Frame_Shift_Del	DEL	G	TCGA-OR-A5J7-01A-11D-A29I-10	1317352	89917049	437704	83	1307										
SLFN5	162394	broad.mit.edu	37	chr17	33586498	33586498	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0630630630630631	7	1	1.06355738454504	2.61054994388328	0.233463816119643	0.068649885583524	0.532036613272311	0	ggctgtattaagaagctaccTgtccatcatttctgcacaca	7	11	2	1	novel		TCGA-OR-A5J7-01A-11D-A29I-10	TCGA-OR-A5J7-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	00b8b899-6191-4169-91bd-a507c326e44d	70d268da-65d7-4e91-a743-63c901185bfd	.	SLFN5-92	NM_144975	exon2	c.T789C	p.P263P	GCTACCTGTCCAT	.	111	4	205	0	.	7	7	0	0	0	C	33586498	T	C	33586498	2	2	7	1	0	0	0	0	0	0	0	1	14772	1567	55	4		4	SLFN5	17	33586498	Silent	SNP	T	TCGA-OR-A5J7-01A-11D-A29I-10		33586498	47608712	84	1308										
BRCA1	672	bcgsc.ca	37	chr17	41234470	41234470	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0630630630630631	7	1	1.06355738454504	2.61054994388328	0.233463816119643	0.068649885583524	0.532036613272311	0	cgcaggtcctcaagggcagaAgagtcacttatgatggaagg	14	8	2	3	rs1060915	byfrequency	TCGA-OR-A5J7-01A-11D-A29I-10	TCGA-OR-A5J7-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	00b8b899-6191-4169-91bd-a507c326e44d	70d268da-65d7-4e91-a743-63c901185bfd	.	BRCA1-3415	NM_007300	exon12	c.T4308C	p.S1436S	GGCAGAAGAGTCA	.	65	5	244	0	A|0.713;G|0.287	5	5	0	0	0	G	41234470	A	G	41234470	2	3	7	1	0	0	0	0	0	0	0	1	1501	59	3	4		4	BRCA1	17	41234470	Silent	SNP	A	TCGA-OR-A5J7-01A-11D-A29I-10	7647972	41234470	39960740	85	1309										
GPATCH8	23131	ucsc.edu;bcgsc.ca	37	chr17	42475983	42475983	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0630630630630631	7	1	1.06355738454504	2.61054994388328	0.233463816119643	0.068649885583524	0.532036613272311	0	cacttcttattgggctttcgGgtagctgggagcttccctat	11	10	1	0	rs936019	byfrequency	TCGA-OR-A5J7-01A-11D-A29I-10	TCGA-OR-A5J7-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	00b8b899-6191-4169-91bd-a507c326e44d	70d268da-65d7-4e91-a743-63c901185bfd	.	GPATCH8-94	NM_001002909	exon8	c.C3462G	p.T1154T	CTTTCGGGTAGCT	.	43	4	76	0	G|0.435;C|0.565	4	4	0	0	0	C	42475983	G	C	42475983	2	2	7	1	0	0	0	0	0	0	0	1	6614	1219	43	3		3	GPATCH8	17	42475983	Silent	SNP	G	TCGA-OR-A5J7-01A-11D-A29I-10	1241513	42475983	38719227	86	1310										
GAA	2548	bcgsc.ca	37	chr17	78091405	78091405	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0630630630630631	7	1	1.06355738454504	2.61054994388328	0.233463816119643	0.068649885583524	0.532036613272311	0	acatctccctccaggtgccaGtagaggcccttggcagcctc	10	16	1	1	rs1126690	byfrequency	TCGA-OR-A5J7-01A-11D-A29I-10	TCGA-OR-A5J7-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	00b8b899-6191-4169-91bd-a507c326e44d	70d268da-65d7-4e91-a743-63c901185bfd	.	GAA-91	NM_001079803	exon18	c.G2338A	p.V780I	GTGCCAGTAGAGG	.	143	5	160	0	G|0.277;A|0.723	0	0	0	0	0	A	78091405	G	A	78091405	3	1	7	1	0	0	0	0	1	0	0	0	6166	1029	36	3	2400	3	GAA	17	78091405	Missense_Mutation	SNP	G	TCGA-OR-A5J7-01A-11D-A29I-10	35615422	78091405	3103805	87	1311										
DSG1	1828	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr18	28918353	28918353	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0630630630630631	7	1	1.06355738454504	2.61054994388328	0.233463816119643	0.068649885583524	0.532036613272311	0	aaactcactttgaaaaataaAgttaccaaggaacagtacaa	5	7	1	1	novel		TCGA-OR-A5J7-01A-11D-A29I-10	TCGA-OR-A5J7-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	00b8b899-6191-4169-91bd-a507c326e44d	70d268da-65d7-4e91-a743-63c901185bfd	.	DSG1-519	NM_001942	exon10	c.A1341G	p.K447K	AAATAAAGTTACC	.	273	112	311	1	.	0	0	0	0	0	G	28918353	A	G	28918353	2	3	7	1	0	0	0	0	0	0	0	1	4787	69	3	4		4	DSG1	18	28918353	Silent	SNP	A	TCGA-OR-A5J7-01A-11D-A29I-10		28918353	49158895	88	1312										
PIK3C3	5289	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr18	39637866	39637867	+	Frame_Shift_Ins	INS	-	-	T													0.0630630630630631	7	1	1.06355738454504	2.61054994388328	0.233463816119643	0.068649885583524	0.532036613272311	0	gcaaactcttccacatagacINStttggatatattttgggtcg					novel		TCGA-OR-A5J7-01A-11D-A29I-10	TCGA-OR-A5J7-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	00b8b899-6191-4169-91bd-a507c326e44d	70d268da-65d7-4e91-a743-63c901185bfd	.	PIK3C3-1312	NM_002647	exon22	c.2283_2284insT	p.D761fs	CATAGACTTTGGA	.	47	12	76	0	.	0	0	0	0	0	T	39637867	-	T	39637866	7	5	7	1	0	1	1	0	0	0	0	0	11941	564	20	0	2369	0	PIK3C3	18	39637866	Frame_Shift_Ins	INS	-	TCGA-OR-A5J7-01A-11D-A29I-10	10719513	39637866	38439382	89	1313										
MEX3C	51320	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	chr18	48723211	48723211	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0630630630630631	7	1	1.06355738454504	2.61054994388328	0.233463816119643	0.068649885583524	0.532036613272311	0	agcagcacagaccccagggaCccgcccgggatctgctgggt	14	15	1	1	novel		TCGA-OR-A5J7-01A-11D-A29I-10	TCGA-OR-A5J7-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	00b8b899-6191-4169-91bd-a507c326e44d	70d268da-65d7-4e91-a743-63c901185bfd	.	MEX3C-659	NM_016626	exon1	c.G480C	p.G160G	CAGGGACCCGCCC	.	32	16	21	0	.	0	0	0	0	0	G	48723211	C	G	48723211	2	3	7	1	0	0	0	0	0	0	0	1	9539	494	18	3		3	MEX3C	18	48723211	Silent	SNP	C	TCGA-OR-A5J7-01A-11D-A29I-10	9085345	48723211	29354037	90	1314										
ODF3L2	284451	hgsc.bcm.edu	37	chr19	464080	464080	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0630630630630631	7	1	1.06355738454504	2.61054994388328	0.233463816119643	0.068649885583524	0.532036613272311	0	gcgctggcggtaggtgtttgCgtccgggctgtcgtactggc	18	10	0	0	rs76592524		TCGA-OR-A5J7-01A-11D-A29I-10	TCGA-OR-A5J7-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	00b8b899-6191-4169-91bd-a507c326e44d	70d268da-65d7-4e91-a743-63c901185bfd	.	ODF3L2-68	NM_182577	exon4	c.G634A	p.A212T	TGTTTGCGTCCGG	.	22	16	1	0	C|0.969;T|0.031	0	0	0	0	0	T	464080	C	T	464080	3	4	7	1	0	0	0	0	1	0	0	0	10861	768	27	1	239	1	ODF3L2	19	464080	Missense_Mutation	SNP	C	TCGA-OR-A5J7-01A-11D-A29I-10		464080	58664903	91	1315										
ABCA7	10347	hgsc.bcm.edu	37	chr19	1065044	1065044	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0630630630630631	7	1	1.06355738454504	2.61054994388328	0.233463816119643	0.068649885583524	0.532036613272311	0	ctgcgcgaggcacatggaggCcgcctgcgcttccagctgcc	14	16	0	0	rs4147935	byfrequency	TCGA-OR-A5J7-01A-11D-A29I-10	TCGA-OR-A5J7-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	00b8b899-6191-4169-91bd-a507c326e44d	70d268da-65d7-4e91-a743-63c901185bfd	.	ABCA7-98	NM_019112	exon46	c.C6159T	p.G2053G	TGGAGGCCGCCTG	.	10	6	1	0	C|0.766;T|0.234	9	2	7	0	0	T	1065044	C	T	1065044	2	4	7	1	0	0	0	0	0	0	0	1	37	726	26	3		3	ABCA7	19	1065044	Silent	SNP	C	TCGA-OR-A5J7-01A-11D-A29I-10	600964	1065044	58063939	92	1316										
FBN3	84467	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	8156470	8156470	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0630630630630631	7	1	1.06355738454504	2.61054994388328	0.233463816119643	0.068649885583524	0.532036613272311	0	ggctcctctgagcactcgtcGatatctggaagggcagggac	14	11	2	1	novel		TCGA-OR-A5J7-01A-11D-A29I-10	TCGA-OR-A5J7-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	00b8b899-6191-4169-91bd-a507c326e44d	70d268da-65d7-4e91-a743-63c901185bfd	.	FBN3-100	NM_032447	exon47	c.C5910T	p.I1970I	CTCGTCGATATCT	.	97	24	106	1	.	0	0	0	0	0	A	8156470	G	A	8156470	2	1	7	1	0	0	0	0	0	0	0	1	5723	1048	37	1		1	FBN3	19	8156470	Silent	SNP	G	TCGA-OR-A5J7-01A-11D-A29I-10	7091426	8156470	50972513	93	1317										
C19orf44	84167	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	16611629	16611629	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0630630630630631	7	1	1.06355738454504	2.61054994388328	0.233463816119643	0.068649885583524	0.532036613272311	0	ttctgcaaggaaagccagccGtcccatgcgtgatgtttttg	11	10	1	1	novel		TCGA-OR-A5J7-01A-11D-A29I-10	TCGA-OR-A5J7-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	00b8b899-6191-4169-91bd-a507c326e44d	70d268da-65d7-4e91-a743-63c901185bfd	.	C19orf44-90	NM_032207	exon2	c.G26A	p.R9H	CCAGCCGTCCCAT	.	164	33	117	0	.	0	0	0	0	0	A	16611629	G	A	16611629	3	1	7	1	0	0	0	0	1	0	0	0	1933	1145	40	1	28	1	C19orf44	19	16611629	Missense_Mutation	SNP	G	TCGA-OR-A5J7-01A-11D-A29I-10	8455159	16611629	42517354	94	1318										
PLEKHG2	64857	hgsc.bcm.edu	37	chr19	39915729	39915729	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0630630630630631	7	1	1.06355738454504	2.61054994388328	0.233463816119643	0.068649885583524	0.532036613272311	0	cacgtcacgggcatcttcgcCgcccccccagccccagccac	8	23	2	0	novel		TCGA-OR-A5J7-01A-11D-A29I-10	TCGA-OR-A5J7-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	00b8b899-6191-4169-91bd-a507c326e44d	70d268da-65d7-4e91-a743-63c901185bfd	.	PLEKHG2-274	NM_022835	exon19	c.C3956T	p.P1319L	CTTCGCCGCCCCC	.	42	20	1	0	.	1	1	0	0	0	T	39915729	C	T	39915729	3	4	7	1	0	0	0	0	1	0	0	0	12098	652	23	1	4026	1	PLEKHG2	19	39915729	Missense_Mutation	SNP	C	TCGA-OR-A5J7-01A-11D-A29I-10	23304100	39915729	19213254	95	1319										
LYPD3	27076	broad.mit.edu	37	chr19	43965594	43965594	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0630630630630631	7	1	1.06355738454504	2.61054994388328	0.233463816119643	0.068649885583524	0.532036613272311	0	tattatggggctgctggggcCccccttttgcaggatactgc	13	11	0	0	rs149095976	byfrequency	TCGA-OR-A5J7-01A-11D-A29I-10	TCGA-OR-A5J7-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	00b8b899-6191-4169-91bd-a507c326e44d	70d268da-65d7-4e91-a743-63c901185bfd	.	LYPD3-91	NM_014400	exon5	c.G950A	p.G317E	TGGGGCCCCCCTT	.	105	3	57	1	C|0.999;T|0.001	4	4	0	0	0	T	43965594	C	T	43965594	3	4	7	1	0	0	0	0	1	0	0	0	9139	623	22	3	94	3	LYPD3	19	43965594	Missense_Mutation	SNP	C	TCGA-OR-A5J7-01A-11D-A29I-10	4049865	43965594	15163389	96	1320										
PTGIR	5739	hgsc.bcm.edu	37	chr19	47127324	47127324	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0630630630630631	7	1	1.06355738454504	2.61054994388328	0.233463816119643	0.068649885583524	0.532036613272311	0	tcggtggccgccagtccggtCaccagcaccgcgaaggccga	14	16	1	0	rs2229128	byfrequency	TCGA-OR-A5J7-01A-11D-A29I-10	TCGA-OR-A5J7-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	00b8b899-6191-4169-91bd-a507c326e44d	70d268da-65d7-4e91-a743-63c901185bfd	.	PTGIR-522	NM_000960	exon2	c.G159C	p.V53V	TCCGGTCACCAGC	.	15	11	1	0	C|0.254;G|0.746	0	0	0	0	0	G	47127324	C	G	47127324	2	3	7	1	0	0	0	0	0	0	0	1	12784	813	29	3		3	PTGIR	19	47127324	Silent	SNP	C	TCGA-OR-A5J7-01A-11D-A29I-10	3161730	47127324	12001659	97	1321										
SULT2B1	6820	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	49079309	49079309	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0630630630630631	7	1	1.06355738454504	2.61054994388328	0.233463816119643	0.068649885583524	0.532036613272311	0	acccaagatgtgcgggacgaCgacatctttatcatcaccta	8	12	3	1	novel		TCGA-OR-A5J7-01A-11D-A29I-10	TCGA-OR-A5J7-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	00b8b899-6191-4169-91bd-a507c326e44d	70d268da-65d7-4e91-a743-63c901185bfd	.	SULT2B1-91	NM_177973	exon2	c.C183T	p.D61D	GGACGACGACATC	.	75	13	78	0	.	0	0	0	0	0	T	49079309	C	T	49079309	2	4	7	1	0	0	0	0	0	0	0	1	15419	535	19	1		1	SULT2B1	19	49079309	Silent	SNP	C	TCGA-OR-A5J7-01A-11D-A29I-10	1951985	49079309	10049674	98	1322										
NTN5	126147	hgsc.bcm.edu	37	chr19	49164952	49164952	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0630630630630631	7	1	1.06355738454504	2.61054994388328	0.233463816119643	0.068649885583524	0.532036613272311	0	gtctagtgctccggcctgggActgggtgtgggtgcccgcac	17	12	1	0	rs281392	byfrequency	TCGA-OR-A5J7-01A-11D-A29I-10	TCGA-OR-A5J7-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	00b8b899-6191-4169-91bd-a507c326e44d	70d268da-65d7-4e91-a743-63c901185bfd	.	NTN5-136	NM_145807	exon7	c.T1452C	p.S484S	CCTGGGACTGGGT	.	6	4	0	0	A|0.464;G|0.536	4	0	4	0	0	G	49164952	A	G	49164952	2	3	7	1	0	0	0	0	0	0	0	1	10732	272	10	4		4	NTN5	19	49164952	Silent	SNP	A	TCGA-OR-A5J7-01A-11D-A29I-10	85643	49164952	9964031	99	1323										
PNKP	11284	broad.mit.edu	37	chr19	50370408	50370408	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0630630630630631	7	1	1.06355738454504	2.61054994388328	0.233463816119643	0.068649885583524	0.532036613272311	0	ggcaggaagatggggggcgcTcccccaggggggctctcgag	20	11	1	1	novel		TCGA-OR-A5J7-01A-11D-A29I-10	TCGA-OR-A5J7-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	00b8b899-6191-4169-91bd-a507c326e44d	70d268da-65d7-4e91-a743-63c901185bfd	.	PNKP-253	NM_007254	exon2	c.A54G	p.G18G	GGGCGCTCCCCCA	.	106	22	34	5	.	79	73	6	0	0	C	50370408	T	C	50370408	2	2	7	1	0	0	0	0	0	0	0	1	12176	1538	54	4		4	PNKP	19	50370408	Silent	SNP	T	TCGA-OR-A5J7-01A-11D-A29I-10	1205456	50370408	8758575	100	1324										
AKT1S1	84335	hgsc.bcm.edu	37	chr19	50376388	50376388	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0630630630630631	7	1	1.06355738454504	2.61054994388328	0.233463816119643	0.068649885583524	0.532036613272311	0	aggcaacggcgcgctgcctcCgccagggctcctcgaccatg	13	17	0	0	rs201965042		TCGA-OR-A5J7-01A-11D-A29I-10	TCGA-OR-A5J7-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	00b8b899-6191-4169-91bd-a507c326e44d	70d268da-65d7-4e91-a743-63c901185bfd	.	AKT1S1-186	NM_032375	exon2	c.G225A	p.A75A	TGCCTCCGCCAGG	.	14	6	2	0	C|0.999;T|0.001	59	24	35	0	0	T	50376388	C	T	50376388	2	4	7	1	0	0	0	0	0	0	0	1	479	639	23	1		1	AKT1S1	19	50376388	Silent	SNP	C	TCGA-OR-A5J7-01A-11D-A29I-10	5980	50376388	8752595	101	1325										
ZCCHC3	85364	hgsc.bcm.edu	37	chr20	278515	278515	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0630630630630631	7	1	1.06355738454504	2.61054994388328	0.233463816119643	0.068649885583524	0.532036613272311	0	ccaccggctggccgcggggaTccgaagggccgtcggagaga	18	13	0	1	rs2223665	byfrequency	TCGA-OR-A5J7-01A-11D-A29I-10	TCGA-OR-A5J7-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	00b8b899-6191-4169-91bd-a507c326e44d	70d268da-65d7-4e91-a743-63c901185bfd	.	ZCCHC3-90	NM_033089	exon1	c.T288C	p.D96D	CGGGGATCCGAAG	.	5	5	1	0	T|0.454;C|0.546	1	0	1	0	0	C	278515	T	C	278515	2	2	7	1	0	0	0	0	0	0	0	1	17626	1432	50	4		4	ZCCHC3	20	278515	Silent	SNP	T	TCGA-OR-A5J7-01A-11D-A29I-10		278515	62747005	102	1326										
SMOX	54498	bcgsc.ca	37	chr20	4163302	4163302	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0630630630630631	7	1	1.06355738454504	2.61054994388328	0.233463816119643	0.068649885583524	0.532036613272311	0	tttgtgtgggaggacgaagcAgagagccacaccctcaccta	12	11	1	1	rs1051904	byfrequency	TCGA-OR-A5J7-01A-11D-A29I-10	TCGA-OR-A5J7-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	00b8b899-6191-4169-91bd-a507c326e44d	70d268da-65d7-4e91-a743-63c901185bfd	.	SMOX-153	NM_175839	exon5	c.A1176G	p.A392A	CGAAGCAGAGAGC	.	82	5	217	2	A|0.432;G|0.568	18	18	0	0	0	G	4163302	A	G	4163302	2	3	7	1	0	0	0	0	0	0	0	1	14838	175	7	4		4	SMOX	20	4163302	Silent	SNP	A	TCGA-OR-A5J7-01A-11D-A29I-10	3884787	4163302	58862218	103	1327										
SLC24A3	57419	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr20	19665891	19665891	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0630630630630631	7	1	1.06355738454504	2.61054994388328	0.233463816119643	0.068649885583524	0.532036613272311	0	ggacacggagggacgatgttGtggctgaggctggcaacgaa	18	7	0	1	rs140841773		TCGA-OR-A5J7-01A-11D-A29I-10	TCGA-OR-A5J7-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	00b8b899-6191-4169-91bd-a507c326e44d	70d268da-65d7-4e91-a743-63c901185bfd	.	SLC24A3-91	NM_020689	exon12	c.G1210T	p.V404L	GATGTTGTGGCTG	.	108	40	187	0	G|1.000;T|0.000	5	4	1	0	0	T	19665891	G	T	19665891	3	4	7	1	0	0	0	0	1	0	0	0	14502	1377	48	3	1256	3	SLC24A3	20	19665891	Missense_Mutation	SNP	G	TCGA-OR-A5J7-01A-11D-A29I-10	15502589	19665891	43359629	104	1328										
SLC17A9	63910	bcgsc.ca	37	chr20	61598731	61598731	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0630630630630631	7	1	1.06355738454504	2.61054994388328	0.233463816119643	0.068649885583524	0.532036613272311	0	cggctacttgatggagaccaCgggctcctggacttgcctgt	13	12	0	2	rs7271712	byfrequency	TCGA-OR-A5J7-01A-11D-A29I-10	TCGA-OR-A5J7-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	00b8b899-6191-4169-91bd-a507c326e44d	70d268da-65d7-4e91-a743-63c901185bfd	.	SLC17A9-92	NM_022082	exon13	c.C1190T	p.T397M	AGACCACGGGCTC	.	130	6	193	1	C|0.952;T|0.048	1	1	0	0	0	T	61598731	C	T	61598731	3	4	7	1	0	0	0	0	1	0	0	0	14459	536	19	1	1240	1	SLC17A9	20	61598731	Missense_Mutation	SNP	C	TCGA-OR-A5J7-01A-11D-A29I-10	41932840	61598731	1426789	105	1329										
KRTAP10-10	353333	ucsc.edu	37	chr21	46057625	46057625	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0630630630630631	7	1	1.06355738454504	2.61054994388328	0.233463816119643	0.068649885583524	0.532036613272311	0	cagcaggcctgctgtgtgccTgtctgctgtgtgcccgtctg	14	13	2	0	rs55677560	bycluster	TCGA-OR-A5J7-01A-11D-A29I-10	TCGA-OR-A5J7-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	00b8b899-6191-4169-91bd-a507c326e44d	70d268da-65d7-4e91-a743-63c901185bfd	.	KRTAP10-10-90	NM_181688	exon1	c.T291C	p.P97P	TGTGCCTGTCTGC	.	107	6	90	0	C|1.000;|0.000	0	0	0	0	0	C	46057625	T	C	46057625	2	2	7	1	0	0	0	0	0	0	0	1	8527	1567	55	4		4	KRTAP10-10	21	46057625	Silent	SNP	T	TCGA-OR-A5J7-01A-11D-A29I-10		46057625	2072270	106	1330										
COL6A2	1292	hgsc.bcm.edu	37	chr21	47532263	47532263	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0630630630630631	7	1	1.06355738454504	2.61054994388328	0.233463816119643	0.068649885583524	0.532036613272311	0	ttcgccgtggtcatcaccgaCggccacgtcaccggcagccc	11	18	3	0	novel		TCGA-OR-A5J7-01A-11D-A29I-10	TCGA-OR-A5J7-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	00b8b899-6191-4169-91bd-a507c326e44d	70d268da-65d7-4e91-a743-63c901185bfd	.	COL6A2-515	NM_058175	exon3	c.C486T	p.D162D	CACCGACGGCCAC	.	72	19	7	0	.	34	34	0	0	0	T	47532263	C	T	47532263	2	4	7	1	0	0	0	0	0	0	0	1	3706	535	19	1		1	COL6A2	21	47532263	Silent	SNP	C	TCGA-OR-A5J7-01A-11D-A29I-10	1474638	47532263	597632	107	1331										
CECR2	27443	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr22	17983977	17983977	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0630630630630631	7	1	1.06355738454504	2.61054994388328	0.233463816119643	0.068649885583524	0.532036613272311	0	ttcgcgagaggacctcccttCgagaacggcagctctacaag	11	13	1	2	novel		TCGA-OR-A5J7-01A-11D-A29I-10	TCGA-OR-A5J7-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	00b8b899-6191-4169-91bd-a507c326e44d	70d268da-65d7-4e91-a743-63c901185bfd	.	CECR2-70	.	.	.	.	TCCCTTCGAGAAC	.	46	38	103	0	.	0	0	0	0	0	T	17983977	C	T	17983977	4	4	7	1	0	0	0	0	0	1	0	0	3212	876	31	1	697	1	CECR2	22	17983977	Nonsense_Mutation	SNP	C	TCGA-OR-A5J7-01A-11D-A29I-10		17983977	33320589	108	1332										
MICALL1	85377	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr22	38307969	38307969	+	Missense_Mutation	SNP	T	T	A													0.0630630630630631	7	1	1.06355738454504	2.61054994388328	0.233463816119643	0.068649885583524	0.532036613272311	0	cctcttgcagagattttgatTcgctttccaaggacaatgtc					novel		TCGA-OR-A5J7-01A-11D-A29I-10	TCGA-OR-A5J7-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	00b8b899-6191-4169-91bd-a507c326e44d	70d268da-65d7-4e91-a743-63c901185bfd	.	MICALL1-153	NM_033386	exon2	c.T157A	p.S53T	TTTGATTCGCTTT	.	253	65	248	0	.	0	0	0	0	0	A	38307969	T	A	38307969	3	1	7	1	0	0	0	0	1	0	0	0	9601	1783	62	5	163	5	MICALL1	22	38307969	Missense_Mutation	SNP	T	TCGA-OR-A5J7-01A-11D-A29I-10	20323992	38307969	12996597	109	1333	14	2								
MICALL1	85377	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr22	38307970	38307970	+	Missense_Mutation	SNP	C	C	T													0.0630630630630631	7	1	1.06355738454504	2.61054994388328	0.233463816119643	0.068649885583524	0.532036613272311	0	ctcttgcagagattttgattCgctttccaaggacaatgtct					rs201864925		TCGA-OR-A5J7-01A-11D-A29I-10	TCGA-OR-A5J7-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	00b8b899-6191-4169-91bd-a507c326e44d	70d268da-65d7-4e91-a743-63c901185bfd	.	MICALL1-153	NM_033386	exon2	c.C158T	p.S53L	TTGATTCGCTTTC	.	259	68	252	2	C|0.999;T|0.001	0	0	0	0	0	T	38307970	C	T	38307970	3	4	7	1	0	0	0	0	1	0	0	0	9601	893	31	1	164	1	MICALL1	22	38307970	Missense_Mutation	SNP	C	TCGA-OR-A5J7-01A-11D-A29I-10	1	38307970	12996596	110	1334	14	2								
SCO2	9997	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr22	50962186	50962186	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0630630630630631	7	1	1.06355738454504	2.61054994388328	0.233463816119643	0.068649885583524	0.532036613272311	0	ggagtggtccacgatgtagtCctggtcctcatccttggggc	14	11	1	0	novel		TCGA-OR-A5J7-01A-11D-A29I-10	TCGA-OR-A5J7-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	00b8b899-6191-4169-91bd-a507c326e44d	70d268da-65d7-4e91-a743-63c901185bfd	.	SCO2-226	NM_001169111	exon2	c.G655T	p.D219Y	TGTAGTCCTGGTC	.	83	14	253	0	.	26	21	5	0	0	A	50962186	C	A	50962186	3	1	7	1	0	0	0	0	1	0	0	0	13967	855	30	3	149	3	SCO2	22	50962186	Missense_Mutation	SNP	C	TCGA-OR-A5J7-01A-11D-A29I-10	12654216	50962186	342380	111	1335										
VCX3B	425054	bcgsc.ca	37	chrX	8434367	8434367	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0630630630630631	7	1	1.06355738454504	2.61054994388328	0.233463816119643	0.068649885583524	0.532036613272311	0	gaaccactgagtcaggagagCgagatggaagaaccactgag	14	8	1	5	rs139169782		TCGA-OR-A5J7-01A-11D-A29I-10	TCGA-OR-A5J7-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	00b8b899-6191-4169-91bd-a507c326e44d	70d268da-65d7-4e91-a743-63c901185bfd	.	.	NM_001001888	exon3	c.C684T	p.S228S	GGAGAGCGAGATG	.	449	11	882	10	C|0.778;T|0.222	0	0	0	0	0	T	8434367	C	T	8434367	2	4	7	1	0	0	0	0	0	0	0	1	17183	767	27	1		1	VCX3B	23	8434367	Silent	SNP	C	TCGA-OR-A5J7-01A-11D-A29I-10		8434367	146836193	112	1336										
WDR44	54521	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	117570692	117570692	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.0630630630630631	7	1	1.06355738454504	2.61054994388328	0.233463816119643	0.068649885583524	0.532036613272311	0	ttcttctttcttcttcaatgGataaaacagtcagattatgg	6	7	6	1	novel		TCGA-OR-A5J7-01A-11D-A29I-10	TCGA-OR-A5J7-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	00b8b899-6191-4169-91bd-a507c326e44d	70d268da-65d7-4e91-a743-63c901185bfd	.	WDR44-133	NM_001184965	exon14	c.G1879C	p.D627H	TCAATGGATAAAA	.	157	70	159	0	.	2	1	1	0	0	C	117570692	G	C	117570692	3	2	7	1	0	0	0	0	1	0	0	0	17334	1174	41	3	1933	3	WDR44	23	117570692	Missense_Mutation	SNP	G	TCGA-OR-A5J7-01A-11D-A29I-10	109136325	117570692	37699868	113	1337										
CHD5	26038	broad.mit.edu;bcgsc.ca	37	chr1	6204158	6204158	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.015	3	1	0.480554686685434	1.00479616306954	0.235165059441808	1	1	0	tcgatctcccaggtgcactgGtcgtagggcaggtctttcca	12	12	2	0	novel		TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	CHD5-719	NM_015557	exon12	c.C1860A	p.D620E	GCACTGGTCGTAG	.	278	9	246	0	.	1	1	0	0	0	T	6204158	G	T	6204158	3	4	8	1	0	0	0	0	1	0	0	0	3334	1252	44	3	4124	3	CHD5	1	6204158	Missense_Mutation	SNP	G	TCGA-OR-A5J8-01A-11D-A29I-10		6204158	243046463	1	1338										
RPS6KA1	6195	hgsc.bcm.edu	37	chr1	26856462	26856462	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.015	3	1	0.480554686685434	1.00479616306954	0.235165059441808	1	1	0	ccgctcatggagctagtgccTctggacccggaggtgagtga	15	11	2	2	rs11800553	byfrequency	TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	RPS6KA1-510	NM_002953	exon1	c.T51G	p.P17P	AGTGCCTCTGGAC	.	6	6	0	0	T|0.065;G|0.935	0	0	0	0	0	G	26856462	T	G	26856462	2	3	8	1	0	0	0	0	0	0	0	1	13685	1538	54	5		5	RPS6KA1	1	26856462	Silent	SNP	T	TCGA-OR-A5J8-01A-11D-A29I-10	20652304	26856462	222394159	2	1339										
SLC9A1	6548	broad.mit.edu	37	chr1	27440466	27440468	+	In_Frame_Del	DEL	TGT	TGT	-													0.015	3	1	0.480554686685434	1.00479616306954	0.235165059441808	1	1	0	caggttgtccaggaggccgaTgttgttgatctgctcaccgc					novel		TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	SLC9A1-91	NM_003047	exon2	c.662_664del	p.221_222del	GGCCGATGTTGTT	.	150	11	161	0	.	0	0	0	0	0	-	27440468	TGT	-	27440466	7	5	8	1	0	1	0	1	0	0	0	0	14744	1464	51	0	1827	0	SLC9A1	1	27440466	In_Frame_Del	DEL	TGT	TCGA-OR-A5J8-01A-11D-A29I-10	584004	27440466	221810155	3	1340										
OPRD1	4985	hgsc.bcm.edu	37	chr1	29138975	29138975	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.015	3	1	0.480554686685434	1.00479616306954	0.235165059441808	1	1	0	ggacgcctaccctagcgcctGccccagcgctggcgccaatg	12	18	0	0	rs1042114	byfrequency	TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	OPRD1-69	NM_000911	exon1	c.G80T	p.C27F	GCGCCTGCCCCAG	.	19	19	0	0	G|0.061;T|0.939	0	0	0	0	0	T	29138975	G	T	29138975	3	4	8	1	0	0	0	0	1	0	0	0	10913	1319	46	3	82	3	OPRD1	1	29138975	Missense_Mutation	SNP	G	TCGA-OR-A5J8-01A-11D-A29I-10	1698509	29138975	220111646	4	1341										
CSMD2	114784	broad.mit.edu	37	chr1	34291361	34291361	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.015	3	1	0.480554686685434	1.00479616306954	0.235165059441808	1	1	0	cacacctcgagacttcaactCaatttgcttcttgactagag	6	12	3	3	novel		TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	CSMD2-103	NM_052896	exon7	c.G928T	p.E310X	TCAACTCAATTTG	.	92	3	58	0	.	0	0	0	0	0	A	34291361	C	A	34291361	4	1	8	1	0	0	0	0	0	1	0	0	3951	835	29	3	9787	3	CSMD2	1	34291361	Nonsense_Mutation	SNP	C	TCGA-OR-A5J8-01A-11D-A29I-10	5152386	34291361	214959260	5	1342										
KCNQ4	9132	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	41296756	41296756	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.015	3	1	0.480554686685434	1.00479616306954	0.235165059441808	1	1	0	caacctgcctgccctgccagCagccggatgggcatcaaaga	11	15	1	1	novel		TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	KCNQ4-90	NM_004700	exon10	c.C1293G	p.S431R	TGCCAGCAGCCGG	.	137	77	133	0	.	0	0	0	0	0	G	41296756	C	G	41296756	3	3	8	1	0	0	0	0	1	0	0	0	8106	724	25	3	1331	3	KCNQ4	1	41296756	Missense_Mutation	SNP	C	TCGA-OR-A5J8-01A-11D-A29I-10	7005395	41296756	207953865	6	1343										
TCTEX1D4	343521	hgsc.bcm.edu	37	chr1	45271828	45271828	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.015	3	1	0.480554686685434	1.00479616306954	0.235165059441808	1	1	0	ggccccagcaccacactgcaTaccagcttgtagcgtggcgg	12	15	0	0	rs17885815	byfrequency	TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	TCTEX1D4-91	NM_001013632	exon2	c.A513G	p.V171V	ACTGCATACCAGC	.	19	17	0	0	T|0.859;C|0.141	0	0	0	0	0	C	45271828	T	C	45271828	2	2	8	1	0	0	0	0	0	0	0	1	15758	1393	49	4		4	TCTEX1D4	1	45271828	Silent	SNP	T	TCGA-OR-A5J8-01A-11D-A29I-10	3975072	45271828	203978793	7	1344										
DMRTB1	63948	broad.mit.edu;bcgsc.ca	37	chr1	53930345	53930345	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.015	3	1	0.480554686685434	1.00479616306954	0.235165059441808	1	1	0	ggagacttccagccaagctaCtacctgccgccgccgccgcc	10	19	0	1	novel		TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	DMRTB1-92	NM_033067	exon3	c.C786A	p.Y262X	AAGCTACTACCTG	.	176	12	119	1	.	0	0	0	0	0	A	53930345	C	A	53930345	4	1	8	1	0	0	0	0	0	1	0	0	4601	576	20	3	796	3	DMRTB1	1	53930345	Nonsense_Mutation	SNP	C	TCGA-OR-A5J8-01A-11D-A29I-10	8658517	53930345	195320276	8	1345										
FGGY	55277	broad.mit.edu	37	chr1	59844420	59844420	+	Splice_Site	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.015	3	1	0.480554686685434	1.00479616306954	0.235165059441808	1	1	0	aatatatatttaatttggcaGaacttgagagagatttgctg	9	3	0	3	novel		TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	FGGY-69	NM_001113411	exon5	c.466-1G>T	.	TTGGCAGAACTTG	.	45	3	61	0	.	0	0	0	0	0	T	59844420	G	T	59844420	5	4	8	1	0	0	0	0	0	0	1	0	5890	956	33	3	479	3	FGGY	1	59844420	Splice_Site	SNP	G	TCGA-OR-A5J8-01A-11D-A29I-10	5914075	59844420	189406201	9	1346										
TGFBR3	7049	broad.mit.edu	37	chr1	92187512	92187512	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.015	3	1	0.480554686685434	1.00479616306954	0.235165059441808	1	1	0	ttaaaaaacttctaacttacCattattttcaagccgaagat	3	8	2	1	novel		TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	TGFBR3-93	NM_001195683	exon8	c.G1075T	p.E359X	ACTTACCATTATT	.	45	6	46	0	.	0	0	0	0	0	A	92187512	C	A	92187512	4	1	8	1	0	0	0	0	0	1	0	0	15860	608	21	3	1520	3	TGFBR3	1	92187512	Nonsense_Mutation	SNP	C	TCGA-OR-A5J8-01A-11D-A29I-10	32343092	92187512	157063109	10	1347										
ATP5F1	515	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	111999313	111999313	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.015	3	1	0.480554686685434	1.00479616306954	0.235165059441808	1	1	0	ccaacacatccagaatgcaaTtgatacggagaagtcacaac	7	11	1	3	novel		TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	ATP5F1-90	NM_001688	exon5	c.T449C	p.I150T	ATGCAATTGATAC	.	342	208	355	2	.	207	52	155	0	0	C	111999313	T	C	111999313	3	2	8	1	0	0	0	0	1	0	0	0	1153	1493	52	4	467	4	ATP5F1	1	111999313	Missense_Mutation	SNP	T	TCGA-OR-A5J8-01A-11D-A29I-10	19811801	111999313	137251308	11	1348										
TRIM33	51592	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	114948141	114948141	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.015	3	1	0.480554686685434	1.00479616306954	0.235165059441808	1	1	0	gcagacagcacaccagtcttCatttgggtcatcatctttat	7	11	5	1	novel		TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	TRIM33-1351	NM_033020	exon15	c.G2659T	p.E887X	AGTCTTCATTTGG	.	116	77	120	0	.	0	0	0	0	0	A	114948141	C	A	114948141	4	1	8	1	0	0	0	0	0	1	0	0	16545	835	29	3	748	3	TRIM33	1	114948141	Nonsense_Mutation	SNP	C	TCGA-OR-A5J8-01A-11D-A29I-10	2948828	114948141	134302480	12	1349										
NOTCH2	4853	hgsc.bcm.edu	37	chr1	120611964	120611964	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.015	3	1	0.480554686685434	1.00479616306954	0.235165059441808	1	1	0	tcaccatgcgcgggggccgcGcagcacagccagagcgccag	15	16	1	1	rs11810554	byfrequency	TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	NOTCH2-1441	NM_024408	exon1	c.C57G	p.C19W	GGCCGCGCAGCAC	.	17	10	0	0	G|0.680;C|0.320	2	0	2	0	0	C	120611964	G	C	120611964	3	2	8	1	0	0	0	0	1	0	0	0	10577	1079	38	2	7494	2	NOTCH2	1	120611964	Missense_Mutation	SNP	G	TCGA-OR-A5J8-01A-11D-A29I-10	5663823	120611964	128638657	13	1350										
IVL	3713	bcgsc.ca	37	chr1	152883056	152883056	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.015	3	1	0.480554686685434	1.00479616306954	0.235165059441808	1	1	0	ctctctgagcagcaggagggAcagctgaagcacctggagca	14	11	1	2	rs45609438	byfrequency	TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	IVL-93	NM_005547	exon2	c.A783G	p.G261G	GGAGGGACAGCTG	.	122	15	110	3	A|0.697;G|0.303	0	0	0	0	0	G	152883056	A	G	152883056	2	3	8	1	0	0	0	0	0	0	0	1	7950	262	10	4		4	IVL	1	152883056	Silent	SNP	A	TCGA-OR-A5J8-01A-11D-A29I-10	32271092	152883056	96367565	14	1351										
CD1C	911	bcgsc.ca	37	chr1	158261043	158261043	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.015	3	1	0.480554686685434	1.00479616306954	0.235165059441808	1	1	0	agactcatggctgggacagtGaatcaggcacaataattttc	10	8	2	2	novel		TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	CD1C-94	NM_001765	exon2	c.G181T	p.E61X	GACAGTGAATCAG	.	349	31	398	2	.	0	0	0	0	0	T	158261043	G	T	158261043	4	4	8	1	0	0	0	0	0	1	0	0	2982	1291	45	3	187	3	CD1C	1	158261043	Nonsense_Mutation	SNP	G	TCGA-OR-A5J8-01A-11D-A29I-10	5377987	158261043	90989578	15	1352										
FCRL6	343413	broad.mit.edu;bcgsc.ca	37	chr1	159778893	159778893	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.015	3	1	0.480554686685434	1.00479616306954	0.235165059441808	1	1	0	tccttccacaaggacggccaCaccttgcaggacaggggccc	11	16	0	0	novel		TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	FCRL6-93	NM_001004310	exon4	c.C462T	p.H154H	CGGCCACACCTTG	.	140	6	174	0	.	3	3	0	0	0	T	159778893	C	T	159778893	2	4	8	1	0	0	0	0	0	0	0	1	5818	477	17	3		3	FCRL6	1	159778893	Silent	SNP	C	TCGA-OR-A5J8-01A-11D-A29I-10	1517850	159778893	89471728	16	1353										
HHIPL2	79802	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	222713605	222713605	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.015	3	1	0.480554686685434	1.00479616306954	0.235165059441808	1	1	0	tcagaaacaaatggattgtcCgaggggactcggtaccgctt	12	9	1	1	novel		TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	HHIPL2-69	NM_024746	exon4	c.G1197T	p.S399S	ATTGTCCGAGGGG	.	100	11	118	0	.	0	0	0	0	0	A	222713605	C	A	222713605	2	1	8	1	0	0	0	0	0	0	0	1	7115	639	23	2		2	HHIPL2	1	222713605	Silent	SNP	C	TCGA-OR-A5J8-01A-11D-A29I-10	62934712	222713605	26537016	17	1354										
LEFTY2	7044	bcgsc.ca	37	chr1	226125385	226125385	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.015	3	1	0.480554686685434	1.00479616306954	0.235165059441808	1	1	0	actcgtaagccaggaagcccGggggctccagcacccagttc	12	15	0	0	rs2295418	byfrequency	TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	LEFTY2-90	NM_003240	exon4	c.C857T	p.P286L	AAGCCCGGGGGCT	.	223	7	191	2	G|0.969;A|0.031	4	4	0	0	0	A	226125385	G	A	226125385	3	1	8	1	0	0	0	0	1	0	0	0	8738	1116	39	1	247	1	LEFTY2	1	226125385	Missense_Mutation	SNP	G	TCGA-OR-A5J8-01A-11D-A29I-10	3411780	226125385	23125236	18	1355										
OBSCN	84033	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	228505189	228505189	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.015	3	1	0.480554686685434	1.00479616306954	0.235165059441808	1	1	0	ccctgatcccccagaggatgCtgaggtggtggctcgcagca	14	13	0	3	novel		TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	OBSCN-403	NM_001271223	exon63	c.C16457G	p.A5486G	AGGATGCTGAGGT	.	107	19	114	0	.	0	0	0	0	0	G	228505189	C	G	228505189	3	3	8	1	0	0	0	0	1	0	0	0	10841	797	28	3	13788	3	OBSCN	1	228505189	Missense_Mutation	SNP	C	TCGA-OR-A5J8-01A-11D-A29I-10	2379804	228505189	20745432	19	1356										
SIPA1L2	57568	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	232615375	232615375	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.015	3	1	0.480554686685434	1.00479616306954	0.235165059441808	1	1	0	aggctggggaggacatacctGttgtctgttgttgggcatgt	16	6	1	0	novel		TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	SIPA1L2-95	NM_020808	exon5	c.C2083A	p.Q695K	ATACCTGTTGTCT	.	176	14	156	0	.	0	0	0	0	0	T	232615375	G	T	232615375	3	4	8	1	0	0	0	0	1	0	0	0	14365	1386	48	3	3153	3	SIPA1L2	1	232615375	Missense_Mutation	SNP	G	TCGA-OR-A5J8-01A-11D-A29I-10	4110186	232615375	16635246	20	1357										
IRF2BP2	359948	hgsc.bcm.edu	37	chr1	234745009	234745009	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.015	3	1	0.480554686685434	1.00479616306954	0.235165059441808	1	1	0	cggcggcttggcggcggccgAggccgcggcgccgggtgggg	24	13	0	0	rs7545855	byfrequency	TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	IRF2BP2-90	NM_182972	exon1	c.T232C	p.S78P	CGGCCGAGGCCGC	.	7	7	0	0	A|0.383;G|0.617	0	0	0	0	0	G	234745009	A	G	234745009	3	3	8	1	0	0	0	0	1	0	0	0	7851	304	11	4	1539	4	IRF2BP2	1	234745009	Missense_Mutation	SNP	A	TCGA-OR-A5J8-01A-11D-A29I-10	2129634	234745009	14505612	21	1358										
OR2T4	127074	bcgsc.ca	37	chr1	248525380	248525380	+	Silent	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.015	3	1	0.480554686685434	1.00479616306954	0.235165059441808	1	1	0	catcctctccgttaccctgtCctcatgaaccatagggtgtg	8	14	2	1	novel		TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	OR2T4-68	NM_001004696	exon1	c.C498A	p.V166V	CCCTGTCCTCATG	.	925	549	919	5	.	0	0	0	0	0	A	248525380	C	A	248525380	2	1	8	1	0	0	0	0	0	0	0	1	11056	842	30	3		3	OR2T4	1	248525380	Silent	SNP	C	TCGA-OR-A5J8-01A-11D-A29I-10	13780371	248525380	725241	22	1359										
TPO	7173	hgsc.bcm.edu	37	chr2	1481231	1481231	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.015	3	1	0.480554686685434	1.00479616306954	0.235165059441808	1	1	0	ggccggagacggccgcgccaGcgaggtcccctccctgacgg	16	17	0	2	rs2175977	byfrequency	TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	TPO-332	NM_175719	exon8	c.G1193C	p.S398T	GCGCCAGCGAGGT	.	8	7	0	0	G|0.301;C|0.699	0	0	0	0	0	C	1481231	G	C	1481231	3	2	8	1	0	0	0	0	1	0	0	0	16448	971	34	3	1219	3	TPO	2	1481231	Missense_Mutation	SNP	G	TCGA-OR-A5J8-01A-11D-A29I-10		1481231	241718142	23	1360										
ALK	238	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	29754831	29754831	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.015	3	1	0.480554686685434	1.00479616306954	0.235165059441808	1	1	0	atctctcttgcagcctcgttGtggggcagcagctgggcaat	13	11	2	0	novel		TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	ALK-3833	NM_004304	exon4	c.C1104T	p.H368H	CTCGTTGTGGGGC	.	158	19	160	0	.	0	0	0	0	0	A	29754831	G	A	29754831	2	1	8	1	0	0	0	0	0	0	0	1	525	1368	48	3		3	ALK	2	29754831	Silent	SNP	G	TCGA-OR-A5J8-01A-11D-A29I-10	28273600	29754831	213444542	24	1361										
NEB	4703	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr2	152484133	152484133	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.015	3	1	0.480554686685434	1.00479616306954	0.235165059441808	1	1	0	tagttcttgtagtccacatcGctgactaaggtctggcactt	9	10	2	1	novel		TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	NEB-145	NM_001271208	exon69	c.C10047A	p.S3349R	CACATCGCTGACT	.	373	32	304	0	.	0	0	0	0	0	T	152484133	G	T	152484133	3	4	8	1	0	0	0	0	1	0	0	0	10331	1078	38	2	16095	2	NEB	2	152484133	Missense_Mutation	SNP	G	TCGA-OR-A5J8-01A-11D-A29I-10	122729302	152484133	90715240	25	1362										
KCNH7	90134	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	163693261	163693261	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.015	3	1	0.480554686685434	1.00479616306954	0.235165059441808	1	1	0	ttctgcactctggcatttgcAatgataaattttttatctgt	6	7	3	1	novel		TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	KCNH7-95	NM_033272	exon2	c.T93G	p.I31M	ATTTGCAATGATA	.	61	41	64	0	.	0	0	0	0	0	C	163693261	A	C	163693261	3	2	8	1	0	0	0	0	1	0	0	0	8058	126	5	5	3623	5	KCNH7	2	163693261	Missense_Mutation	SNP	A	TCGA-OR-A5J8-01A-11D-A29I-10	11209128	163693261	79506112	26	1363										
HECW2	57520	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr2	197122592	197122592	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.015	3	1	0.480554686685434	1.00479616306954	0.235165059441808	1	1	0	cgcttgaaaggcgcaccaatCctggagtcccttcagttcgg	11	13	1	1	novel		TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	HECW2-668	NM_020760	exon18	c.G3374T	p.G1125V	ACCAATCCTGGAG	.	116	9	93	0	.	0	0	0	0	0	A	197122592	C	A	197122592	3	1	8	1	0	0	0	0	1	0	0	0	7064	855	30	3	1392	3	HECW2	2	197122592	Missense_Mutation	SNP	C	TCGA-OR-A5J8-01A-11D-A29I-10	33429331	197122592	46076781	27	1364										
CCDC150	284992	hgsc.bcm.edu	37	chr2	197531518	197531519	+	Frame_Shift_Ins	INS	-	-	A													0.015	3	1	0.480554686685434	1.00479616306954	0.235165059441808	1	1	0	agaactactggcccaggaacINSaaaaaaaaaaagaagagttg					novel		TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	.	NM_001080539	exon7	c.838_839insA	p.Q280fs	CAGGAACAAAAAA	.	216	0	178	0	.	0	0	0	0	0	A	197531519	-	A	197531518	7	5	8	1	0	1	1	0	0	0	0	0	2791	479	17	0	864	0	CCDC150	2	197531518	Frame_Shift_Ins	INS	-	TCGA-OR-A5J8-01A-11D-A29I-10	408926	197531518	45667855	28	1365										
SF3B1	23451	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	198281581	198281581	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.015	3	1	0.480554686685434	1.00479616306954	0.235165059441808	1	1	0	ggacgctgctgctccattgaCgacttttagttctccagctt	9	12	1	1	rs139823279	alternate_allele	TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	SF3B1-140	NM_012433	exon6	c.G550T	p.V184F	CATTGACGACTTT	.	60	35	81	0	C|1.000;T|0.000	19	2	17	0	0	A	198281581	C	A	198281581	3	1	8	1	0	0	0	0	1	0	0	0	14184	536	19	2	3444	2	SF3B1	2	198281581	Missense_Mutation	SNP	C	TCGA-OR-A5J8-01A-11D-A29I-10	750063	198281581	44917792	29	1366										
ADAM23	8745	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	207454139	207454139	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.015	3	1	0.480554686685434	1.00479616306954	0.235165059441808	1	1	0	cctatctccaaaagaggctgCagggtctgacaagttctgct	10	11	3	2	novel		TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	ADAM23-228	NM_003812	exon21	c.C1859A	p.A620E	AGGCTGCAGGGTC	.	66	47	73	0	.	0	0	0	0	0	A	207454139	C	A	207454139	3	1	8	1	0	0	0	0	1	0	0	0	245	710	25	3	1941	3	ADAM23	2	207454139	Missense_Mutation	SNP	C	TCGA-OR-A5J8-01A-11D-A29I-10	9172558	207454139	35745234	30	1367										
ABCA12	26154	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr2	215866333	215866333	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.015	3	1	0.480554686685434	1.00479616306954	0.235165059441808	1	1	0	tttagcctctctctccatttCatctatggtttttgctgcct	5	12	4	0	novel		TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	ABCA12-99	NM_173076	exon21	c.G2812T	p.E938X	CCATTTCATCTAT	.	116	7	125	0	.	0	0	0	0	0	A	215866333	C	A	215866333	4	1	8	1	0	0	0	0	0	1	0	0	30	835	29	3	5107	3	ABCA12	2	215866333	Nonsense_Mutation	SNP	C	TCGA-OR-A5J8-01A-11D-A29I-10	8412194	215866333	27333040	31	1368										
SMARCAL1	50485	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	217332761	217332761	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.015	3	1	0.480554686685434	1.00479616306954	0.235165059441808	1	1	0	acgcaattacgcaagagcttGagagaaaggtgagctccctt	11	9	0	4	novel		TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	SMARCAL1-293	NM_014140	exon14	c.G2236T	p.E746X	GAGCTTGAGAGAA	.	70	49	69	0	.	0	0	0	0	0	T	217332761	G	T	217332761	4	4	8	1	0	0	0	0	0	1	0	0	14808	1291	45	3	2282	3	SMARCAL1	2	217332761	Nonsense_Mutation	SNP	G	TCGA-OR-A5J8-01A-11D-A29I-10	1466428	217332761	25866612	32	1369										
PPP1R7	5510	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr2	242092956	242092956	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.015	3	1	0.480554686685434	1.00479616306954	0.235165059441808	1	1	0	agaaacacagcagtggcatcGtggccgacctcagtgaacag	12	11	1	2	novel		TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	PPP1R7-660	NM_002712	exon2	c.G118A	p.V40M	GGCATCGTGGCCG	.	185	10	125	0	.	78	69	9	0	0	A	242092956	G	A	242092956	3	1	8	1	0	0	0	0	1	0	0	0	12408	1145	40	1	124	1	PPP1R7	2	242092956	Missense_Mutation	SNP	G	TCGA-OR-A5J8-01A-11D-A29I-10	24760195	242092956	1106417	33	1370										
BTD	686	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	15683552	15683552	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.015	3	1	0.480554686685434	1.00479616306954	0.235165059441808	1	1	0	tgcctggagcctcaccgcttCaatgacacagaggtgattcc	10	13	2	3	novel		TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	BTD-90	NM_000060	exon3	c.C447A	p.F149L	CCGCTTCAATGAC	.	115	26	105	1	.	14	11	3	0	0	A	15683552	C	A	15683552	3	1	8	1	0	0	0	0	1	0	0	0	1553	825	29	3	457	3	BTD	3	15683552	Missense_Mutation	SNP	C	TCGA-OR-A5J8-01A-11D-A29I-10		15683552	182338878	34	1371										
DLEC1	9940	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	38105387	38105387	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.015	3	1	0.480554686685434	1.00479616306954	0.235165059441808	1	1	0	caattgggtttttcacagatTatgaaattggtccagtttat	8	5	1	2	novel		TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	DLEC1-161	NM_007337	exon6	c.T1150C	p.Y384H	ACAGATTATGAAA	.	110	17	102	0	.	0	0	0	0	0	C	38105387	T	C	38105387	3	2	8	1	0	0	0	0	1	0	0	0	4563	1754	61	4	1172	4	DLEC1	3	38105387	Missense_Mutation	SNP	T	TCGA-OR-A5J8-01A-11D-A29I-10	22421835	38105387	159917043	35	1372										
PROK2	60675	hgsc.bcm.edu	37	chr3	71834135	71834135	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.015	3	1	0.480554686685434	1.00479616306954	0.235165059441808	1	1	0	atcacggcggcgtccccagcGcggggcgtgagcagcagcgg	18	14	1	1	novel		TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	PROK2-90	NM_001126128	exon1	c.C69A	p.R23R	CCCAGCGCGGGGC	.	48	25	2	0	.	0	0	0	0	0	T	71834135	G	T	71834135	2	4	8	1	0	0	0	0	0	0	0	1	12583	1074	38	2		2	PROK2	3	71834135	Silent	SNP	G	TCGA-OR-A5J8-01A-11D-A29I-10	33728748	71834135	126188295	36	1373										
CHST13	166012	hgsc.bcm.edu	37	chr3	126260630	126260630	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.015	3	1	0.480554686685434	1.00479616306954	0.235165059441808	1	1	0	agcggcgcgacctgctgaacAgcgcctgtagccgccactca	12	16	1	1	rs12495696	byfrequency	TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	CHST13-90	NM_152889	exon3	c.A235G	p.S79G	CTGAACAGCGCCT	.	30	23	2	0	A|0.936;G|0.064	0	0	0	0	0	G	126260630	A	G	126260630	3	3	8	1	0	0	0	0	1	0	0	0	3407	188	7	4	245	4	CHST13	3	126260630	Missense_Mutation	SNP	A	TCGA-OR-A5J8-01A-11D-A29I-10	54426495	126260630	71761800	37	1374										
RUVBL1	8607	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	127842496	127842496	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.015	3	1	0.480554686685434	1.00479616306954	0.235165059441808	1	1	0	aagccgctctcgtccagcccCagccctttcacgtggctgtg	10	17	2	0	novel		TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	RUVBL1-227	NM_003707	exon1	c.G72T	p.L24L	CAGCCCCAGCCCT	.	104	12	66	0	.	20	19	1	0	0	A	127842496	C	A	127842496	2	1	8	1	0	0	0	0	0	0	0	1	13787	581	21	3		3	RUVBL1	3	127842496	Silent	SNP	C	TCGA-OR-A5J8-01A-11D-A29I-10	1581866	127842496	70179934	38	1375										
HLTF	6596	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	148763946	148763946	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.015	3	1	0.480554686685434	1.00479616306954	0.235165059441808	1	1	0	tgaaagtgtaatgtgctgaaTaaatactttacgttctggta	9	4	1	2	rs137866464	alternate_allele	TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	HLTF-659	NM_139048	exon18	c.A1993T	p.I665F	GCTGAATAAATAC	.	121	83	119	0	T|1.000;C|0.000	4	0	4	0	0	A	148763946	T	A	148763946	3	1	8	1	0	0	0	0	1	0	0	0	7236	1406	49	5	1068	5	HLTF	3	148763946	Missense_Mutation	SNP	T	TCGA-OR-A5J8-01A-11D-A29I-10	20921450	148763946	49258484	39	1376										
RNF13	11342	bcgsc.ca	37	chr3	149678534	149678534	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.015	3	1	0.480554686685434	1.00479616306954	0.235165059441808	1	1	0	tttgcttcaacagcttatcaCtgcaagtgtgtagacccttg	8	10	2	1	rs6768054	byfrequency	TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	RNF13-227	NM_007282	exon11	c.C789T	p.H263H	TTATCACTGCAAG	.	207	11	139	0	C|0.360;T|0.640	0	0	0	0	0	T	149678534	C	T	149678534	2	4	8	1	0	0	0	0	0	0	0	1	13472	564	20	3		3	RNF13	3	149678534	Silent	SNP	C	TCGA-OR-A5J8-01A-11D-A29I-10	914588	149678534	48343896	40	1377										
TSC22D2	9819	hgsc.bcm.edu	37	chr3	150128392	150128392	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.015	3	1	0.480554686685434	1.00479616306954	0.235165059441808	1	1	0	ccgtgggcaccggccagaatGcttcctcggtgggcgcgcag	16	14	0	1	rs879634	byfrequency	TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	TSC22D2-91	NM_014779	exon1	c.G1255A	p.A419T	CAGAATGCTTCCT	.	14	13	1	0	G|0.797;A|0.203	1	0	1	0	0	A	150128392	G	A	150128392	3	1	8	1	0	0	0	0	1	0	0	0	16646	1319	46	3	1257	3	TSC22D2	3	150128392	Missense_Mutation	SNP	G	TCGA-OR-A5J8-01A-11D-A29I-10	449858	150128392	47894038	41	1378										
CLCN2	1181	broad.mit.edu;ucsc.edu	37	chr3	184075805	184075805	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.015	3	1	0.480554686685434	1.00479616306954	0.235165059441808	1	1	0	aggtcagcccaatgaccttaGctataaaggtcttgagtgtg	11	8	2	2	novel		TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	CLCN2-90	NM_001171087	exon5	c.C560A	p.A187D	ACCTTAGCTATAA	.	125	18	123	2	.	1	1	0	0	0	T	184075805	G	T	184075805	3	4	8	1	0	0	0	0	1	0	0	0	3469	971	34	3	2216	3	CLCN2	3	184075805	Missense_Mutation	SNP	G	TCGA-OR-A5J8-01A-11D-A29I-10	33947413	184075805	13946625	42	1379										
CLDN1	9076	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	190039777	190039777	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.015	3	1	0.480554686685434	1.00479616306954	0.235165059441808	1	1	0	gtgggggtgcactcactgctCagattcagcaaggagtcaaa	13	9	4	1	novel		TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	CLDN1-91	NM_021101	exon1	c.G219T	p.L73L	ACTGCTCAGATTC	.	130	72	113	0	.	0	0	0	0	0	A	190039777	C	A	190039777	2	1	8	1	0	0	0	0	0	0	0	1	3477	813	29	3		3	CLDN1	3	190039777	Silent	SNP	C	TCGA-OR-A5J8-01A-11D-A29I-10	5963972	190039777	7982653	43	1380										
ATP13A5	344905	broad.mit.edu	37	chr3	193042730	193042731	+	Frame_Shift_Ins	INS	-	-	G													0.015	3	1	0.480554686685434	1.00479616306954	0.235165059441808	1	1	0	agaaggatcagagagtggcaINSgctggccatggccgcacaca					novel		TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	ATP13A5-144	NM_198505	exon14	c.1597_1598insC	p.C533fs	AGTGGCAGCTGGC	.	137	7	137	0	.	0	0	0	0	0	G	193042731	-	G	193042730	7	5	8	1	0	1	1	0	0	0	0	0	1128	188	7	0	2125	0	ATP13A5	3	193042730	Frame_Shift_Ins	INS	-	TCGA-OR-A5J8-01A-11D-A29I-10	3002953	193042730	4979700	44	1381										
CC2D2A	57545	broad.mit.edu	37	chr4	15516455	15516455	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.015	3	1	0.480554686685434	1.00479616306954	0.235165059441808	1	1	0	atccatgatcggctgcagatGgaaagagaaatgctcttcat	10	8	2	3	novel		TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	CC2D2A-25	NM_001080522	exon10	c.G843T	p.M281I	GCAGATGGAAAGA	.	133	8	76	1	.	0	0	0	0	0	T	15516455	G	T	15516455	3	4	8	1	0	0	0	0	1	0	0	0	2734	1348	47	3	1076	3	CC2D2A	4	15516455	Missense_Mutation	SNP	G	TCGA-OR-A5J8-01A-11D-A29I-10		15516455	175637821	45	1382										
FGFBP2	83888	broad.mit.edu;bcgsc.ca	37	chr4	15964327	15964327	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.015	3	1	0.480554686685434	1.00479616306954	0.235165059441808	1	1	0	gatggcgtcccagcctcaggCtgctggttgggctctgggct	16	12	2	0	novel		TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	FGFBP2-22	NM_031950	exon1	c.G426T	p.Q142H	CTCAGGCTGCTGG	.	56	45	48	1	.	0	0	0	0	0	A	15964327	C	A	15964327	3	1	8	1	0	0	0	0	1	0	0	0	5880	796	28	3	249	3	FGFBP2	4	15964327	Missense_Mutation	SNP	C	TCGA-OR-A5J8-01A-11D-A29I-10	447872	15964327	175189949	46	1383										
SOD3	6649	hgsc.bcm.edu	37	chr4	24801354	24801354	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.015	3	1	0.480554686685434	1.00479616306954	0.235165059441808	1	1	0	aggtgcagccgtcggccacgCtggacgccgcgcagccccgg	16	17	0	0	rs8192291	byfrequency	TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	SOD3-90	NM_003102	exon2	c.C211T	p.L71L	GCCACGCTGGACG	.	26	18	0	0	C|0.777;T|0.223	12	0	12	0	0	T	24801354	C	T	24801354	2	4	8	1	0	0	0	0	0	0	0	1	14957	796	28	3		3	SOD3	4	24801354	Silent	SNP	C	TCGA-OR-A5J8-01A-11D-A29I-10	8837027	24801354	166352922	47	1384										
RBM47	54502	hgsc.bcm.edu	37	chr4	40440854	40440854	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.015	3	1	0.480554686685434	1.00479616306954	0.235165059441808	1	1	0	acgccctcgggcaccttggcGgaggacccggcggccgagtc	16	16	0	0	rs1052153	byfrequency	TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	RBM47-25	NM_001098634	exon4	c.C57G	p.S19S	CTTGGCGGAGGAC	.	8	7	0	0	G|0.794;C|0.206	1	0	1	0	0	C	40440854	G	C	40440854	2	2	8	1	0	0	0	0	0	0	0	1	13176	1103	39	2		2	RBM47	4	40440854	Silent	SNP	G	TCGA-OR-A5J8-01A-11D-A29I-10	15639500	40440854	150713422	48	1385										
UGT2B17	7367	broad.mit.edu;bcgsc.ca	37	chr4	69417567	69417567	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.015	3	1	0.480554686685434	1.00479616306954	0.235165059441808	1	1	0	aggtcattctggggtaaccaCttatacagtcgagtattgga	11	7	2	0	novel		TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	UGT2B17-91	NM_001077	exon4	c.G1068A	p.K356K	TAACCACTTATAC	.	321	12	370	0	.	0	0	0	0	0	T	69417567	C	T	69417567	2	4	8	1	0	0	0	0	0	0	0	1	16997	564	20	3		3	UGT2B17	4	69417567	Silent	SNP	C	TCGA-OR-A5J8-01A-11D-A29I-10	28976713	69417567	121736709	49	1386										
SHROOM3	57619	hgsc.bcm.edu	37	chr4	77662248	77662248	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.015	3	1	0.480554686685434	1.00479616306954	0.235165059441808	1	1	0	ctgcggagccccgaggcgtcGgcctccgcctccccgcacac	12	21	0	0	rs60216375	byfrequency	TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	SHROOM3-93	NM_020859	exon5	c.G2922A	p.S974S	GGCGTCGGCCTCC	.	5	4	0	0	G|0.531;A|0.469	0	0	0	0	0	A	77662248	G	A	77662248	2	1	8	1	0	0	0	0	0	0	0	1	14330	1103	39	1		1	SHROOM3	4	77662248	Silent	SNP	G	TCGA-OR-A5J8-01A-11D-A29I-10	8244681	77662248	113492028	50	1387										
NUDT9	53343	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	88372877	88372877	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.015	3	1	0.480554686685434	1.00479616306954	0.235165059441808	1	1	0	gcacaaactcttcagccaagAccacctagtggtaagaaata	7	11	2	2	novel		TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	NUDT9-90	NM_024047	exon6	c.A779T	p.D260V	GCCAAGACCACCT	.	48	35	58	0	.	0	0	0	0	0	T	88372877	A	T	88372877	3	4	8	1	0	0	0	0	1	0	0	0	10775	275	10	5	801	5	NUDT9	4	88372877	Missense_Mutation	SNP	A	TCGA-OR-A5J8-01A-11D-A29I-10	10710629	88372877	102781399	51	1388										
GSTCD	79807	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	106746955	106746955	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.015	3	1	0.480554686685434	1.00479616306954	0.235165059441808	1	1	0	ttactgggatgtttaatattGgagtaagtaatcaagtaatt	9	2	1	0	novel		TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	GSTCD-92	NM_001031720	exon8	c.G1528T	p.G510X	AATATTGGAGTAA	.	81	48	121	0	.	0	0	0	0	0	T	106746955	G	T	106746955	4	4	8	1	0	0	0	0	0	1	0	0	6856	1349	47	3	1554	3	GSTCD	4	106746955	Nonsense_Mutation	SNP	G	TCGA-OR-A5J8-01A-11D-A29I-10	18374078	106746955	84407321	52	1389										
ENPEP	2028	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	111470691	111470691	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.015	3	1	0.480554686685434	1.00479616306954	0.235165059441808	1	1	0	tttgttttttaaggttactcCgttcctccgtgttagggttt	9	7	0	0	novel		TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	ENPEP-157	NM_001977	exon16	c.C2233A	p.R745S	TTACTCCGTTCCT	.	108	33	120	0	.	0	0	0	0	0	A	111470691	C	A	111470691	3	1	8	1	0	0	0	0	1	0	0	0	5141	652	23	2	2295	2	ENPEP	4	111470691	Missense_Mutation	SNP	C	TCGA-OR-A5J8-01A-11D-A29I-10	4723736	111470691	79683585	53	1390										
C4orf32	132720	hgsc.bcm.edu	37	chr4	113066831	113066831	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.015	3	1	0.480554686685434	1.00479616306954	0.235165059441808	1	1	0	gcgggaggcggcagggaccgGgtgggatcccggggcgagcc	23	11	0	0	rs10002700		TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	C4orf32-90	NM_152400	exon1	c.G95A	p.G32E	GGACCGGGTGGGA	.	8	7	0	0	G|0.022;A|0.978	3	0	3	0	0	A	113066831	G	A	113066831	3	1	8	1	0	0	0	0	1	0	0	0	2268	1232	43	3	97	3	C4orf32	4	113066831	Missense_Mutation	SNP	G	TCGA-OR-A5J8-01A-11D-A29I-10	1596140	113066831	78087445	54	1391										
ANP32C	23520	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr4	165118218	165118218	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.015	3	1	0.480554686685434	1.00479616306954	0.235165059441808	1	1	0	ttcttcatcttcctcgccatCtacctctccatcgttataac	2	16	5	0	novel		TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	ANP32C-90	NM_012403	exon1	c.G646T	p.D216Y	CGCCATCTACCTC	.	142	21	148	0	.	0	0	0	0	0	A	165118218	C	A	165118218	3	1	8	1	0	0	0	0	1	0	0	0	707	913	32	3	61	3	ANP32C	4	165118218	Missense_Mutation	SNP	C	TCGA-OR-A5J8-01A-11D-A29I-10	52051387	165118218	26036058	55	1392										
EXOC3	11336	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr5	446342	446342	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.015	3	1	0.480554686685434	1.00479616306954	0.235165059441808	1	1	0	tgaaggagacagaccgggagGccgttgcgacagcagtgcaa	16	9	0	3	novel		TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	EXOC3-90	NM_007277	exon2	c.G22C	p.A8P	CGGGAGGCCGTTG	.	165	12	101	0	.	4	4	0	0	0	C	446342	G	C	446342	3	2	8	1	0	0	0	0	1	0	0	0	5316	1203	42	3	24	3	EXOC3	5	446342	Missense_Mutation	SNP	G	TCGA-OR-A5J8-01A-11D-A29I-10		446342	180468918	56	1393										
SRD5A1	6715	hgsc.bcm.edu	37	chr5	6633779	6633779	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.015	3	1	0.480554686685434	1.00479616306954	0.235165059441808	1	1	0	ggctgcgcggtcttcgcgcgCaatcgtcagacgaactcagt	13	13	3	1	rs248793	byfrequency	TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	SRD5A1-90	NM_001047	exon1	c.C90G	p.R30R	CGCGCGCAATCGT	.	7	7	0	0	C|0.454;G|0.546	2	0	2	0	0	G	6633779	C	G	6633779	2	3	8	1	0	0	0	0	0	0	0	1	15175	697	25	3		3	SRD5A1	5	6633779	Silent	SNP	C	TCGA-OR-A5J8-01A-11D-A29I-10	6187437	6633779	174281481	57	1394										
SPEF2	79925	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	35644627	35644627	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.015	3	1	0.480554686685434	1.00479616306954	0.235165059441808	1	1	0	agatgttttgatattgaaaaGgttctatagaactatttttt	7	2	1	4	novel		TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	SPEF2-26	NM_024867	exon4	c.G585T	p.K195N	TGAAAAGGTTCTA	.	173	50	122	0	.	0	0	0	0	0	T	35644627	G	T	35644627	3	4	8	1	0	0	0	0	1	0	0	0	15072	1014	35	3	599	3	SPEF2	5	35644627	Missense_Mutation	SNP	G	TCGA-OR-A5J8-01A-11D-A29I-10	29010848	35644627	145270633	58	1395										
RGMB	285704	hgsc.bcm.edu	37	chr5	98109828	98109828	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.015	3	1	0.480554686685434	1.00479616306954	0.235165059441808	1	1	0	gctgccgccgccgaggttgaGcagcgccgcagccccgggct	16	17	0	1	rs2547973	bycluster;byfrequency;by1000genomes	TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	.	NM_001012761	exon3	c.G177A	p.E59E	GGTTGAGCAGCGC	.	7	7	0	0	G|0.735;A|0.265	0	0	0	0	0	A	98109828	G	A	98109828	2	1	8	1	0	0	0	0	0	0	0	1	13316	962	34	3		3	RGMB	5	98109828	Silent	SNP	G	TCGA-OR-A5J8-01A-11D-A29I-10	62465201	98109828	82805432	59	1396										
SLCO6A1	133482	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	101755672	101755672	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.015	3	1	0.480554686685434	1.00479616306954	0.235165059441808	1	1	0	agacatttctaatgtggaaaCaatgacacctcccagaagct	7	10	1	3	novel		TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	SLCO6A1-96	NM_173488	exon8	c.G1330T	p.V444F	TGGAAACAATGAC	.	126	53	139	0	.	0	0	0	0	0	A	101755672	C	A	101755672	3	1	8	1	0	0	0	0	1	0	0	0	14767	478	17	3	853	3	SLCO6A1	5	101755672	Missense_Mutation	SNP	C	TCGA-OR-A5J8-01A-11D-A29I-10	3645844	101755672	79159588	60	1397										
PCDHGB7	56099	hgsc.bcm.edu;broad.mit.edu	37	chr5	140799203	140799203	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.015	3	1	0.480554686685434	1.00479616306954	0.235165059441808	1	1	0	acctggtgaccaaggtggtgGccgtggacgcggactcgggg	19	10	0	1	novel		TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	PCDHGB7-29	NM_018927	exon1	c.G1777C	p.A593P	GTGGTGGCCGTGG	.	100	6	20	0	.	2	2	0	0	0	C	140799203	G	C	140799203	3	2	8	1	0	0	0	0	1	0	0	0	11597	1203	42	3	1779	3	PCDHGB7	5	140799203	Missense_Mutation	SNP	G	TCGA-OR-A5J8-01A-11D-A29I-10	39043531	140799203	40116057	61	1398										
KCTD16	57528	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	143586513	143586513	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.015	3	1	0.480554686685434	1.00479616306954	0.235165059441808	1	1	0	gtttttcattgacagagatgGattcttgttccgttatattc	8	6	2	2	novel		TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	KCTD16-137	NM_020768	exon3	c.G236T	p.G79V	GAGATGGATTCTT	.	127	20	135	0	.	0	0	0	0	0	T	143586513	G	T	143586513	3	4	8	1	0	0	0	0	1	0	0	0	8124	1174	41	3	238	3	KCTD16	5	143586513	Missense_Mutation	SNP	G	TCGA-OR-A5J8-01A-11D-A29I-10	2787310	143586513	37328747	62	1399										
ZNF346	23567	hgsc.bcm.edu	37	chr5	176449890	176449890	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.015	3	1	0.480554686685434	1.00479616306954	0.235165059441808	1	1	0	tgtgggaagccgtgtccggtGcccagccggtgggtagagag	19	9	0	1	novel		TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	ZNF346-90	NM_012279	exon1	c.G151T	p.A51S	TCCGGTGCCCAGC	.	94	5	41	0	.	3	3	0	0	0	T	176449890	G	T	176449890	3	4	8	1	0	0	0	0	1	0	0	0	17897	1319	46	3	153	3	ZNF346	5	176449890	Missense_Mutation	SNP	G	TCGA-OR-A5J8-01A-11D-A29I-10	32863377	176449890	4465370	63	1400										
MYLIP	29116	bcgsc.ca	37	chr6	16145325	16145325	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.015	3	1	0.480554686685434	1.00479616306954	0.235165059441808	1	1	0	tgtggacctcgtttcaagaaAcaaccagagcccttcacact	7	13	2	2	rs9370867	byfrequency	TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	MYLIP-91	NM_013262	exon6	c.A1025G	p.N342S	CAAGAAACAACCA	.	201	6	172	0	A|0.313;G|0.687	31	31	0	0	0	G	16145325	A	G	16145325	3	3	8	1	0	0	0	0	1	0	0	0	10083	43	2	4	1047	4	MYLIP	6	16145325	Missense_Mutation	SNP	A	TCGA-OR-A5J8-01A-11D-A29I-10		16145325	154969742	64	1401										
KIAA0319	9856	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	24581184	24581184	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.015	3	1	0.480554686685434	1.00479616306954	0.235165059441808	1	1	0	agtgacattgacaaatccttCtccaaaggcgttttcactag	7	10	2	2	novel		TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	KIAA0319-92	NM_001168377	exon7	c.G1249T	p.E417X	ATCCTTCTCCAAA	.	50	9	72	0	.	0	0	0	0	0	A	24581184	C	A	24581184	4	1	8	1	0	0	0	0	0	1	0	0	8189	922	32	3	2029	3	KIAA0319	6	24581184	Nonsense_Mutation	SNP	C	TCGA-OR-A5J8-01A-11D-A29I-10	8435859	24581184	146533883	65	1402										
IER3	8870	hgsc.bcm.edu	37	chr6	30712154	30712154	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.015	3	1	0.480554686685434	1.00479616306954	0.235165059441808	1	1	0	ggcgctggggcgcccggcagGggccgctgcgggctccggga	22	14	0	0	novel		TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	IER3-90	NM_003897	exon1	c.C142A	p.P48T	CGGCAGGGGCCGC	.	26	7	4	0	.	10	9	1	0	0	T	30712154	G	T	30712154	3	4	8	1	0	0	0	0	1	0	0	0	7527	1232	43	3	336	3	IER3	6	30712154	Missense_Mutation	SNP	G	TCGA-OR-A5J8-01A-11D-A29I-10	6130970	30712154	140402913	66	1403										
VARS	7407	hgsc.bcm.edu	37	chr6	31762843	31762844	+	Missense_Mutation	DNP	GG	GG	CT													0.015	3	1	0.480554686685434	1.00479616306954	0.235165059441808	1	1	0	gcaggcggggtgggggaaagGgagtcctgctagtcgggggt					novel		TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	GG	GG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	VARS-93	NM_006295	exon2	c.C151A	p.P51S	GAAAGGGAGTCCT	.	8	0	1	0	G|0.721;T|0.279	0	0	0	0	0	CT	31762844	GG	CT	31762843	3	2	8	1	0	0	0	0	1	0	0	0	17161	1232	43	3	3758	3	VARS	6	31762843	Missense_Mutation	DNP	GG	TCGA-OR-A5J8-01A-11D-A29I-10	1050689	31762843	139352224	67	1404										
KCNK17	89822	hgsc.bcm.edu	37	chr6	39282036	39282036	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.015	3	1	0.480554686685434	1.00479616306954	0.235165059441808	1	1	0	gagcagcaggagcacggtgcTgggcaccgcgcagccccgga	17	14	0	0	rs10947804	byfrequency	TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	KCNK17-227	NM_001135111	exon1	c.A61G	p.S21G	CGGTGCTGGGCAC	.	30	30	0	0	T|0.441;C|0.559	0	0	0	0	0	C	39282036	T	C	39282036	3	2	8	1	0	0	0	0	1	0	0	0	8085	1580	55	4	1089	4	KCNK17	6	39282036	Missense_Mutation	SNP	T	TCGA-OR-A5J8-01A-11D-A29I-10	7519193	39282036	131833031	68	1405										
TTBK1	84630	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	43230667	43230667	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.015	3	1	0.480554686685434	1.00479616306954	0.235165059441808	1	1	0	agcctctgtggagcaggaggCcctgagcaacgccttccgct	13	14	1	1	novel		TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	TTBK1-353	NM_032538	exon13	c.C1565T	p.A522V	AGGAGGCCCTGAG	.	423	72	351	0	.	0	0	0	0	0	T	43230667	C	T	43230667	3	4	8	1	0	0	0	0	1	0	0	0	16714	739	26	3	1611	3	TTBK1	6	43230667	Missense_Mutation	SNP	C	TCGA-OR-A5J8-01A-11D-A29I-10	3948631	43230667	127884400	69	1406										
PKHD1	5314	broad.mit.edu	37	chr6	51524024	51524024	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.015	3	1	0.480554686685434	1.00479616306954	0.235165059441808	1	1	0	gagaggcctacgttgaccaaCtcttctataatgactagtgc	9	10	2	3	novel		TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	PKHD1-603	NM_138694	exon61	c.G10900A	p.V3634I	GACCAACTCTTCT	.	105	3	148	0	.	0	0	0	0	0	T	51524024	C	T	51524024	3	4	8	1	0	0	0	0	1	0	0	0	12000	565	20	3	1352	3	PKHD1	6	51524024	Missense_Mutation	SNP	C	TCGA-OR-A5J8-01A-11D-A29I-10	8293357	51524024	119591043	70	1407										
EYS	346007	broad.mit.edu	37	chr6	65767590	65767590	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.015	3	1	0.480554686685434	1.00479616306954	0.235165059441808	1	1	0	ttttgcagggatgtgaagcaCactcatctatatcaatttca	7	8	4	1	novel		TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	EYS-660	NM_001142800	exon13	c.G2054T	p.C685F	GAAGCACACTCAT	.	222	4	250	0	.	0	0	0	0	0	A	65767590	C	A	65767590	3	1	8	1	0	0	0	0	1	0	0	0	5345	478	17	3	7349	3	EYS	6	65767590	Missense_Mutation	SNP	C	TCGA-OR-A5J8-01A-11D-A29I-10	14243566	65767590	105347477	71	1408										
SENP6	26054	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	76423518	76423518	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.015	3	1	0.480554686685434	1.00479616306954	0.235165059441808	1	1	0	actgtggtgtatatgtattgCagtatgtagagagctttttt	11	3	0	1	novel		TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	SENP6-660	NM_015571	exon23	c.C3106T	p.Q1036X	GTATTGCAGTATG	.	75	7	56	0	.	16	12	4	0	0	T	76423518	C	T	76423518	4	4	8	1	0	0	0	0	0	1	0	0	14085	711	25	3	3196	3	SENP6	6	76423518	Nonsense_Mutation	SNP	C	TCGA-OR-A5J8-01A-11D-A29I-10	10655928	76423518	94691549	72	1409										
TSPYL4	23270	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	116574092	116574092	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.015	3	1	0.480554686685434	1.00479616306954	0.235165059441808	1	1	0	tcgaattctagaaggctgtgGtctgaaaaccagttgaagaa	11	6	2	4	novel		TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	.	NM_021648	exon1	c.C1080G	p.D360E	GCTGTGGTCTGAA	.	124	12	115	0	.	2	2	0	0	0	C	116574092	G	C	116574092	3	2	8	1	0	0	0	0	1	0	0	0	16699	1252	44	3	168	3	TSPYL4	6	116574092	Missense_Mutation	SNP	G	TCGA-OR-A5J8-01A-11D-A29I-10	40150574	116574092	54540975	73	1410										
CTGF	1490	hgsc.bcm.edu	37	chr6	132271952	132271952	+	Missense_Mutation	SNP	G	G	C													0.015	3	1	0.480554686685434	1.00479616306954	0.235165059441808	1	1	0	gttggccggggagccgaagtGacagaataggcccttgtgcg					rs7451102		TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	CTGF-90	NM_001901	exon2	c.C247G	p.H83D	CGAAGTGACAGAA	.	5	5	0	0	G|0.000;C|1.000	0	0	0	0	0	C	132271952	G	C	132271952	3	2	8	1	0	0	0	0	1	0	0	0	4014	1290	45	3	818	3	CTGF	6	132271952	Missense_Mutation	SNP	G	TCGA-OR-A5J8-01A-11D-A29I-10	15697860	132271952	38843115	74	1411	15	2								
CTGF	1490	hgsc.bcm.edu	37	chr6	132271959	132271959	+	Silent	SNP	T	T	G													0.015	3	1	0.480554686685434	1.00479616306954	0.235165059441808	1	1	0	ggggagccgaagtgacagaaTaggcccttgtgcgggtcgca					rs12206231		TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	CTGF-90	NM_001901	exon2	c.A240C	p.L80L	ACAGAATAGGCCC	.	4	4	0	0	T|0.000;G|1.000	0	0	0	0	0	G	132271959	T	G	132271959	2	3	8	1	0	0	0	0	0	0	0	1	4014	1393	49	5		5	CTGF	6	132271959	Silent	SNP	T	TCGA-OR-A5J8-01A-11D-A29I-10	7	132271959	38843108	75	1412	15	2								
CTGF	1490	hgsc.bcm.edu	37	chr6	132271980	132271980	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.015	3	1	0.480554686685434	1.00479616306954	0.235165059441808	1	1	0	aggcccttgtgcgggtcgcaTgggtcgcgctcggtgcacag	17	12	0	0	rs6934749		TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	CTGF-90	NM_001901	exon2	c.A219C	p.P73P	GTCGCATGGGTCG	.	5	5	0	0	T|0.000;G|1.000	41	0	41	0	0	G	132271980	T	G	132271980	2	3	8	1	0	0	0	0	0	0	0	1	4014	1451	51	5		5	CTGF	6	132271980	Silent	SNP	T	TCGA-OR-A5J8-01A-11D-A29I-10	21	132271980	38843087	76	1413										
VNN1	8876	broad.mit.edu;bcgsc.ca	37	chr6	133014263	133014263	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.015	3	1	0.480554686685434	1.00479616306954	0.235165059441808	1	1	0	tcaacagctgacaaatgtggCaaaacattcatccaagctgt	7	10	2	1	novel		TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	VNN1-93	NM_004666	exon4	c.G726A	p.L242L	ATGTGGCAAAACA	.	292	26	167	1	.	0	0	0	0	0	T	133014263	C	T	133014263	2	4	8	1	0	0	0	0	0	0	0	1	17220	709	25	3		3	VNN1	6	133014263	Silent	SNP	C	TCGA-OR-A5J8-01A-11D-A29I-10	742283	133014263	38100804	77	1414										
GPR126	57211	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr6	142729367	142729367	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.015	3	1	0.480554686685434	1.00479616306954	0.235165059441808	1	1	0	attactatccagaatctgaaGgatcctgttcaaataaaaat	5	7	2	2	novel		TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	GPR126-91	NM_198569	exon16	c.G2349T	p.K783N	TCTGAAGGATCCT	.	257	15	198	0	.	0	0	0	0	0	T	142729367	G	T	142729367	3	4	8	1	0	0	0	0	1	0	0	0	6660	991	35	3	2411	3	GPR126	6	142729367	Missense_Mutation	SNP	G	TCGA-OR-A5J8-01A-11D-A29I-10	9715104	142729367	28385700	78	1415										
TULP4	56995	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	158900810	158900810	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.015	3	1	0.480554686685434	1.00479616306954	0.235165059441808	1	1	0	tcatctccatctgctggggtCaccgggattcgaggctgttg	13	11	4	0	novel		TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	TULP4-91	NM_020245	exon7	c.C1054A	p.H352N	TGGGGTCACCGGG	.	103	37	69	0	.	0	0	0	0	0	A	158900810	C	A	158900810	3	1	8	1	0	0	0	0	1	0	0	0	16814	826	29	3	1080	3	TULP4	6	158900810	Missense_Mutation	SNP	C	TCGA-OR-A5J8-01A-11D-A29I-10	16171443	158900810	12214257	79	1416										
PRR18	285800	hgsc.bcm.edu	37	chr6	166720806	166720806	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.015	3	1	0.480554686685434	1.00479616306954	0.235165059441808	1	1	0	cggccccgcgcggcagccgcGgactccacgccgcgcagcca	14	21	0	0	rs911203	byfrequency	TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	PRR18-514	NM_175922	exon1	c.C825G	p.S275S	AGCCGCGGACTCC	.	12	9	4	0	G|0.796;C|0.204	0	0	0	0	0	C	166720806	G	C	166720806	2	2	8	1	0	0	0	0	0	0	0	1	12622	1103	39	2		2	PRR18	6	166720806	Silent	SNP	G	TCGA-OR-A5J8-01A-11D-A29I-10	7819996	166720806	4394261	80	1417										
TNRC18	84629	hgsc.bcm.edu	37	chr7	5372406	5372406	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.015	3	1	0.480554686685434	1.00479616306954	0.235165059441808	1	1	0	tgcaggaagatgcgctcgctGcggcgccgcgtccacaggtc	15	14	0	1	rs13238738	byfrequency	TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	TNRC18-46	NM_001080495	exon19	c.C5994A	p.R1998R	CTCGCTGCGGCGC	.	11	6	0	0	G|0.411;T|0.589	1	0	1	0	0	T	5372406	G	T	5372406	2	4	8	1	0	0	0	0	0	0	0	1	16376	1306	46	3		3	TNRC18	7	5372406	Silent	SNP	G	TCGA-OR-A5J8-01A-11D-A29I-10		5372406	153766257	81	1418										
USP42	84132	hgsc.bcm.edu	37	chr7	6193521	6193521	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.015	3	1	0.480554686685434	1.00479616306954	0.235165059441808	1	1	0	caagaaggctccgccgccccGcgatcccggcacccccgcta	10	21	0	1	rs61729726	byfrequency	TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	USP42-659	NM_032172	exon15	c.G2336C	p.R779P	CGCCCCGCGATCC	.	21	9	0	0	G|0.456;C|0.544	3	2	1	0	0	C	6193521	G	C	6193521	3	2	8	1	0	0	0	0	1	0	0	0	17111	1087	38	2		2	USP42	7	6193521	Missense_Mutation	SNP	G	TCGA-OR-A5J8-01A-11D-A29I-10	821115	6193521	152945142	82	1419										
TWISTNB	221830	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr7	19738103	19738103	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.015	3	1	0.480554686685434	1.00479616306954	0.235165059441808	1	1	0	gtcctggtcctgaacttcctGgtgctttttcttcttcttct	7	12	4	1	novel		TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	TWISTNB-91	NM_001002926	exon4	c.C853A	p.Q285K	CTTCCTGGTGCTT	.	94	5	46	0	.	8	6	2	0	0	T	19738103	G	T	19738103	3	4	8	1	0	0	0	0	1	0	0	0	16822	1357	47	3	167	3	TWISTNB	7	19738103	Missense_Mutation	SNP	G	TCGA-OR-A5J8-01A-11D-A29I-10	13544582	19738103	139400560	83	1420										
GPNMB	10457	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	23296587	23296587	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.015	3	1	0.480554686685434	1.00479616306954	0.235165059441808	1	1	0	agtgacggggaaaatggcacCggccaaagccatcataacgt	12	10	1	1	novel		TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	GPNMB-580	NM_002510	exon4	c.C444T	p.T148T	TGGCACCGGCCAA	.	317	135	225	0	.	239	124	115	0	0	T	23296587	C	T	23296587	2	4	8	1	0	0	0	0	0	0	0	1	6640	639	23	1		1	GPNMB	7	23296587	Silent	SNP	C	TCGA-OR-A5J8-01A-11D-A29I-10	3558484	23296587	135842076	84	1421										
PURB	5814	hgsc.bcm.edu	37	chr7	44924461	44924461	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.015	3	1	0.480554686685434	1.00479616306954	0.235165059441808	1	1	0	gccgctctgcaagccgcccgGcccggggcccgcgccgaagc	15	20	1	0	novel		TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	PURB-90	NM_033224	exon1	c.C487A	p.P163T	CGCCCGGCCCGGG	.	21	6	3	0	.	0	0	0	0	0	T	44924461	G	T	44924461	3	4	8	1	0	0	0	0	1	0	0	0	12863	1203	42	3	455	3	PURB	7	44924461	Missense_Mutation	SNP	G	TCGA-OR-A5J8-01A-11D-A29I-10	21627874	44924461	114214202	85	1422										
PKD1L1	168507	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr7	47930172	47930172	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.015	3	1	0.480554686685434	1.00479616306954	0.235165059441808	1	1	0	tcagggtagggggacaggaaCacccgggtctcagaagagtt	16	8	2	2	novel		TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	PKD1L1-145	NM_138295	exon16	c.G2643T	p.V881V	CAGGAACACCCGG	.	139	11	88	0	.	0	0	0	0	0	A	47930172	C	A	47930172	2	1	8	1	0	0	0	0	0	0	0	1	11993	465	17	3		3	PKD1L1	7	47930172	Silent	SNP	C	TCGA-OR-A5J8-01A-11D-A29I-10	3005711	47930172	111208491	86	1423										
PHTF2	57157	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr7	77579101	77579101	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.015	3	1	0.480554686685434	1.00479616306954	0.235165059441808	1	1	0	aagatttgttacccttggatCagaaacaagtaaaaaatata	6	5	1	2	novel		TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	PHTF2-23	NM_001127357	exon15	c.C1964A	p.S655X	TTGGATCAGAAAC	.	167	9	114	0	.	1	1	0	0	0	A	77579101	C	A	77579101	4	1	8	1	0	0	0	0	0	1	0	0	11892	838	29	3	2076	3	PHTF2	7	77579101	Nonsense_Mutation	SNP	C	TCGA-OR-A5J8-01A-11D-A29I-10	29648929	77579101	81559562	87	1424										
NPTX2	4885	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr7	98256610	98256610	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.015	3	1	0.480554686685434	1.00479616306954	0.235165059441808	1	1	0	tggggagaacctggccccctGgcaccccatcaagcccgggg	14	16	1	1	novel		TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	NPTX2-515	NM_002523	exon4	c.G1022A	p.W341X	CCCCCTGGCACCC	.	178	17	105	0	.	6	5	1	0	0	A	98256610	G	A	98256610	4	1	8	1	0	0	0	0	0	1	0	0	10632	1357	47	3	1036	3	NPTX2	7	98256610	Nonsense_Mutation	SNP	G	TCGA-OR-A5J8-01A-11D-A29I-10	20677509	98256610	60882053	88	1425										
ZNF277	11179	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	111982631	111982631	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.015	3	1	0.480554686685434	1.00479616306954	0.235165059441808	1	1	0	ttcaggtattattttccaacCtatgaaaatgacactctcct	4	10	2	2	novel		TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	ZNF277-155	NM_021994	exon12	c.C1200A	p.T400T	TCCAACCTATGAA	.	93	37	67	0	.	27	21	6	0	0	A	111982631	C	A	111982631	2	1	8	1	0	0	0	0	0	0	0	1	17849	668	24	3		3	ZNF277	7	111982631	Silent	SNP	C	TCGA-OR-A5J8-01A-11D-A29I-10	13726021	111982631	47156032	89	1426										
EXOC4	60412	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	133692487	133692487	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.015	3	1	0.480554686685434	1.00479616306954	0.235165059441808	1	1	0	gcccagtacttcaggcgcatCagtgagtctggcatcaagaa	11	11	4	2	novel		TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	EXOC4-159	NM_021807	exon17	c.C2586A	p.I862I	GCGCATCAGTGAG	.	151	44	108	0	.	10	5	5	0	0	A	133692487	C	A	133692487	2	1	8	1	0	0	0	0	0	0	0	1	5319	816	29	3		3	EXOC4	7	133692487	Silent	SNP	C	TCGA-OR-A5J8-01A-11D-A29I-10	21709856	133692487	25446176	90	1427										
KLRG2	346689	hgsc.bcm.edu	37	chr7	139168063	139168063	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.015	3	1	0.480554686685434	1.00479616306954	0.235165059441808	1	1	0	gcgcaggctcagccccgggcGcctcgccattccggggcagc	15	18	1	0	rs12707447		TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	KLRG2-90	NM_198508	exon1	c.C326T	p.A109V	CCGGGCGCCTCGC	.	9	6	2	0	G|0.735;A|0.265	0	0	0	0	0	A	139168063	G	A	139168063	3	1	8	1	0	0	0	0	1	0	0	0	8443	1087	38	1	923	1	KLRG2	7	139168063	Missense_Mutation	SNP	G	TCGA-OR-A5J8-01A-11D-A29I-10	5475576	139168063	19970600	91	1428										
TAS2R40	259286	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr7	142919418	142919418	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.015	3	1	0.480554686685434	1.00479616306954	0.235165059441808	1	1	0	tggagaacattttcagtctgCtattccgaattgtttataac	7	7	2	1	novel		TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	TAS2R40-23	NM_176882	exon1	c.C247A	p.L83I	AGTCTGCTATTCC	.	70	6	61	0	.	0	0	0	0	0	A	142919418	C	A	142919418	3	1	8	1	0	0	0	0	1	0	0	0	15615	796	28	3	249	3	TAS2R40	7	142919418	Missense_Mutation	SNP	C	TCGA-OR-A5J8-01A-11D-A29I-10	3751355	142919418	16219245	92	1429										
OR2A14	135941	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	143826247	143826247	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.015	3	1	0.480554686685434	1.00479616306954	0.235165059441808	1	1	0	atcacagacatcaccttgccGcgattccaggttggtccagc	9	14	2	1	novel		TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	OR2A14-90	NM_001001659	exon1	c.G42A	p.P14P	CTTGCCGCGATTC	.	187	57	165	0	.	0	0	0	0	0	A	143826247	G	A	143826247	2	1	8	1	0	0	0	0	0	0	0	1	11005	1074	38	1		1	OR2A14	7	143826247	Silent	SNP	G	TCGA-OR-A5J8-01A-11D-A29I-10	906829	143826247	15312416	93	1430										
OR2A14	135941	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	143826338	143826338	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.015	3	1	0.480554686685434	1.00479616306954	0.235165059441808	1	1	0	tgctggggaatggggtcatcTttgggattatctgcctggac	15	7	3	0	novel		TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	OR2A14-90	NM_001001659	exon1	c.T133G	p.F45V	GTCATCTTTGGGA	.	276	27	197	0	.	0	0	0	0	0	G	143826338	T	G	143826338	3	3	8	1	0	0	0	0	1	0	0	0	11005	1609	56	5	135	5	OR2A14	7	143826338	Missense_Mutation	SNP	T	TCGA-OR-A5J8-01A-11D-A29I-10	91	143826338	15312325	94	1431										
ARHGEF5	7984	broad.mit.edu	37	chr7	144062343	144062343	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.015	3	1	0.480554686685434	1.00479616306954	0.235165059441808	1	1	0	tgcccccaaagtccagggggAggagcaggagcactcgggga	17	11	0	0	novel		TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	ARHGEF5-229	NM_005435	exon2	c.A2581T	p.R861W	AGGGGGAGGAGCA	.	392	9	331	2	.	0	0	0	0	0	T	144062343	A	T	144062343	3	4	8	1	0	0	0	0	1	0	0	0	909	295	11	5	2583	5	ARHGEF5	7	144062343	Missense_Mutation	SNP	A	TCGA-OR-A5J8-01A-11D-A29I-10	236005	144062343	15076320	95	1432										
C7orf33	202865	bcgsc.ca	37	chr7	148311375	148311375	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.015	3	1	0.480554686685434	1.00479616306954	0.235165059441808	1	1	0	gcctgggaggacagtgacaaGttcatacctaaacgtaagct	11	9	1	1	rs145413433	alternate_allele	TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	C7orf33-90	NM_145304	exon2	c.G446T	p.S149I	TGACAAGTTCATA	.	188	9	142	0	G|1.000;A|0.000	0	0	0	0	0	T	148311375	G	T	148311375	3	4	8	1	0	0	0	0	1	0	0	0	2394	1029	36	3	452	3	C7orf33	7	148311375	Missense_Mutation	SNP	G	TCGA-OR-A5J8-01A-11D-A29I-10	4249032	148311375	10827288	96	1433										
ADCY8	114	hgsc.bcm.edu	37	chr8	132052342	132052342	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.015	3	1	0.480554686685434	1.00479616306954	0.235165059441808	1	1	0	gtcgcctgacagctgcggcgCgtggtggttggggccgccgc	19	13	0	1	rs2228949	byfrequency	TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	ADCY8-157	NM_001115	exon1	c.G238A	p.A80T	GCGGCGCGTGGTG	.	28	21	0	0	C|0.979;T|0.021	0	0	0	0	0	T	132052342	C	T	132052342	3	4	8	1	0	0	0	0	1	0	0	0	300	768	27	1	3589	1	ADCY8	8	132052342	Missense_Mutation	SNP	C	TCGA-OR-A5J8-01A-11D-A29I-10		132052342	14311680	97	1434										
PHF20L1	51105	broad.mit.edu;bcgsc.ca	37	chr8	133816893	133816893	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.015	3	1	0.480554686685434	1.00479616306954	0.235165059441808	1	1	0	gaacgttccaaagatggtctTtccacagccagagagcacat	9	11	1	2	novel		TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	PHF20L1-92	NM_016018	exon8	c.T755G	p.F252C	TGGTCTTTCCACA	.	213	8	197	0	.	7	7	0	0	0	G	133816893	T	G	133816893	3	3	8	1	0	0	0	0	1	0	0	0	11861	1841	64	5	781	5	PHF20L1	8	133816893	Missense_Mutation	SNP	T	TCGA-OR-A5J8-01A-11D-A29I-10	1764551	133816893	12547129	98	1435										
COL22A1	169044	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr8	139609190	139609190	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.015	3	1	0.480554686685434	1.00479616306954	0.235165059441808	1	1	0	tcttgaataagccgacgcagGgtttccatggatggagactc	12	9	1	2	novel		TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	COL22A1-103	NM_152888	exon62	c.C4389A	p.T1463T	ACGCAGGGTTTCC	.	101	20	100	0	.	0	0	0	0	0	T	139609190	G	T	139609190	2	4	8	1	0	0	0	0	0	0	0	1	3687	1219	43	3		3	COL22A1	8	139609190	Silent	SNP	G	TCGA-OR-A5J8-01A-11D-A29I-10	5792297	139609190	6754832	99	1436										
ZNF696	79943	hgsc.bcm.edu	37	chr8	144378868	144378868	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.015	3	1	0.480554686685434	1.00479616306954	0.235165059441808	1	1	0	ggcttcttccggcaccagcgActccacacgggcgagaagcc	12	16	1	1	rs7386259	byfrequency	TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	ZNF696-90	NM_030895	exon3	c.A1023G	p.R341R	CCAGCGACTCCAC	.	11	11	1	0	A|0.118;G|0.882	0	0	0	0	0	G	144378868	A	G	144378868	2	3	8	1	0	0	0	0	0	0	0	1	18136	262	10	4		4	ZNF696	8	144378868	Silent	SNP	A	TCGA-OR-A5J8-01A-11D-A29I-10	4769678	144378868	1985154	100	1437										
MAFA	389692	hgsc.bcm.edu	37	chr8	144511538	144511538	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.015	3	1	0.480554686685434	1.00479616306954	0.235165059441808	1	1	0	caggaagaagtcggccgtgcCcttggccccgccgggaccgg	16	15	0	1	rs62521874		TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	MAFA-278	NM_201589	exon1	c.G1039T	p.G347C	CCGTGCCCTTGGC	.	5	5	0	0	C|0.946;A|0.054	0	0	0	0	0	A	144511538	C	A	144511538	3	1	8	1	0	0	0	0	1	0	0	0	9185	623	22	3	26	3	MAFA	8	144511538	Missense_Mutation	SNP	C	TCGA-OR-A5J8-01A-11D-A29I-10	132670	144511538	1852484	101	1438										
C9orf66	157983	hgsc.bcm.edu	37	chr9	215057	215057	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.015	3	1	0.480554686685434	1.00479616306954	0.235165059441808	1	1	0	gccccccgcggcgcgcaggtTgcggccggacagcccagcgc	16	19	0	0	rs481905	byfrequency	TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	C9orf66-514	NM_152569	exon1	c.A340G	p.N114D	GCAGGTTGCGGCC	.	6	6	0	0	T|0.413;C|0.587	0	0	0	0	0	C	215057	T	C	215057	3	2	8	1	0	0	0	0	1	0	0	0	2496	1812	63	4	551	4	C9orf66	9	215057	Missense_Mutation	SNP	T	TCGA-OR-A5J8-01A-11D-A29I-10		215057	140998374	102	1439										
ZCCHC6	79670	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr9	88918065	88918065	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.015	3	1	0.480554686685434	1.00479616306954	0.235165059441808	1	1	0	acaaattcgacaacatctatCatttggggccagctctcctt	6	12	3	0	novel		TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	ZCCHC6-92	NM_024617	exon25	c.G4030T	p.D1344Y	ATCTATCATTTGG	.	125	11	111	0	.	10	9	1	0	0	A	88918065	C	A	88918065	3	1	8	1	0	0	0	0	1	0	0	0	17629	826	29	3	469	3	ZCCHC6	9	88918065	Missense_Mutation	SNP	C	TCGA-OR-A5J8-01A-11D-A29I-10	88703008	88918065	52295366	103	1440										
WNK2	65268	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr9	96025908	96025908	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.015	3	1	0.480554686685434	1.00479616306954	0.235165059441808	1	1	0	gacagctgtgaaggcgccttTggagggggcaggctggaggg	21	7	0	1	novel		TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	WNK2-765	NM_006648	exon14	c.T3471C	p.F1157F	CGCCTTTGGAGGG	.	74	9	51	0	.	0	0	0	0	0	C	96025908	T	C	96025908	2	2	8	1	0	0	0	0	0	0	0	1	17416	1809	63	4		4	WNK2	9	96025908	Silent	SNP	T	TCGA-OR-A5J8-01A-11D-A29I-10	7107843	96025908	45187523	104	1441										
DBH	1621	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr9	136518101	136518101	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.015	3	1	0.480554686685434	1.00479616306954	0.235165059441808	1	1	0	cctgcacgtacaacacagaaGaccgggagctggccacagtg	12	13	0	2	novel		TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	DBH-516	NM_000787	exon9	c.G1414T	p.D472Y	ACAGAAGACCGGG	.	264	23	249	0	.	0	0	0	0	0	T	136518101	G	T	136518101	3	4	8	1	0	0	0	0	1	0	0	0	4256	942	33	3	1448	3	DBH	9	136518101	Missense_Mutation	SNP	G	TCGA-OR-A5J8-01A-11D-A29I-10	40492193	136518101	4695330	105	1442										
GLT6D1	360203	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr9	138517976	138517976	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.015	3	1	0.480554686685434	1.00479616306954	0.235165059441808	1	1	0	ccttctgtaatgtttttccaGgacccgcctgtcgaaagtcc	8	13	1	0	novel		TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	GLT6D1-91	NM_182974	exon4	c.C196A	p.L66M	TTTCCAGGACCCG	.	144	51	123	0	.	0	0	0	0	0	T	138517976	G	T	138517976	3	4	8	1	0	0	0	0	1	0	0	0	6488	991	35	3	642	3	GLT6D1	9	138517976	Missense_Mutation	SNP	G	TCGA-OR-A5J8-01A-11D-A29I-10	1999875	138517976	2695455	106	1443										
KIAA1984	84960	hgsc.bcm.edu	37	chr9	139694613	139694613	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.015	3	1	0.480554686685434	1.00479616306954	0.235165059441808	1	1	0	ccagcaaggaggagctgcggCtgctgcaggtggagaggcgg	20	9	0	1	rs35342663	byfrequency	TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	KIAA1984-91	NM_001039374	exon4	c.C430A	p.L144M	CTGCGGCTGCTGC	.	21	11	3	0	C|0.928;A|0.072	0	0	0	0	0	A	139694613	C	A	139694613	3	1	8	1	0	0	0	0	1	0	0	0	8287	796	28	3	444	3	KIAA1984	9	139694613	Missense_Mutation	SNP	C	TCGA-OR-A5J8-01A-11D-A29I-10	1176637	139694613	1518818	107	1444										
NFKB2	4791	hgsc.bcm.edu	37	chr10	104159196	104159196	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.015	3	1	0.480554686685434	1.00479616306954	0.235165059441808	1	1	0	ggggaggaagccgcggagccAagcgccccctccaggacccc	15	17	0	0	rs4919633	byfrequency	TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	NFKB2-522	NM_001077494	exon13	c.A1269G	p.P423P	GGAGCCAAGCGCC	.	13	13	0	0	A|0.009;G|0.991	6	0	6	0	0	G	104159196	A	G	104159196	2	3	8	1	0	0	0	0	0	0	0	1	10405	117	5	4		4	NFKB2	10	104159196	Silent	SNP	A	TCGA-OR-A5J8-01A-11D-A29I-10		104159196	31375551	108	1445										
NRAP	4892	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	115364490	115364490	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.015	3	1	0.480554686685434	1.00479616306954	0.235165059441808	1	1	0	cagagcctgggcattcttggCatggaccaggtgcaccatgt	13	11	1	1	novel		TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	NRAP-522	NM_001261463	exon35	c.G4105T	p.A1369S	TCTTGGCATGGAC	.	102	14	113	0	.	0	0	0	0	0	A	115364490	C	A	115364490	3	1	8	1	0	0	0	0	1	0	0	0	10667	710	25	3	1119	3	NRAP	10	115364490	Missense_Mutation	SNP	C	TCGA-OR-A5J8-01A-11D-A29I-10	11205294	115364490	20170257	109	1446										
CTBP2	1488	hgsc.bcm.edu	37	chr10	126715159	126715160	+	In_Frame_Ins	INS	-	-	GCCGCAGGCTGGGGCTGCAGG													0.015	3	1	0.480554686685434	1.00479616306954	0.235165059441808	1	1	0	gggatgctgtctgcagaggaINSgccgcagcgcccagagaagc					novel		TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	CTBP2-90	NM_022802	exon1	c.1170_1171insCCTGCAGCCCCAGCCTGCGGC	p.A390delinsALQPQPAA	CAGAGGAGCCGCA	.	20	9	2	1	.	0	0	0	0	0	GCCGCAGGCTGGGGCTGCAGG	126715160	-	GCCGCAGGCTGGGGCTGCAGG	126715159	7	5	8	1	0	1	1	0	0	0	0	0	4004	291	11	0	1823	0	CTBP2	10	126715159	In_Frame_Ins	INS	-	TCGA-OR-A5J8-01A-11D-A29I-10	11350669	126715159	8819588	110	1447										
JAKMIP3	282973	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	133930934	133930934	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.015	3	1	0.480554686685434	1.00479616306954	0.235165059441808	1	1	0	gagatctccgagctcaagggCgccaaaaggcaggtggagga	16	9	2	1	novel		TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	JAKMIP3-23	NM_001105521	exon2	c.C489T	p.G163G	CAAGGGCGCCAAA	.	206	127	198	1	.	0	0	0	0	0	T	133930934	C	T	133930934	2	4	8	1	0	0	0	0	0	0	0	1	7963	755	27	1		1	JAKMIP3	10	133930934	Silent	SNP	C	TCGA-OR-A5J8-01A-11D-A29I-10	7215775	133930934	1603813	111	1448										
FRG2B	441581	mdanderson.org	37	chr10	135440214	135440214	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.015	3	1	0.480554686685434	1.00479616306954	0.235165059441808	1	1	0	gagcactggatggaggagcaGtggagatcggggtcttcatt	17	6	2	1	rs75987380	alternate_allele	TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	.	NM_001080998	exon1	c.C33A	p.H11Q	GGAGCAGTGGAGA	.	617	77	688	0	.	0	0	0	0	0	T	135440214	G	T	135440214	3	4	8	1	0	0	0	0	1	0	0	0	6066	1020	36	3	818	3	FRG2B	10	135440214	Missense_Mutation	SNP	G	TCGA-OR-A5J8-01A-11D-A29I-10	1509280	135440214	94533	112	1449										
MUC5B	727897	bcgsc.ca	37	chr11	1253980	1253980	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.015	3	1	0.480554686685434	1.00479616306954	0.235165059441808	1	1	0	caagggcgtacagctcagcgActggagggacggcgtctgca	16	11	2	0	rs202127660		TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	.	NM_002458	exon17	c.A2045G	p.D682G	TCAGCGACTGGAG	.	121	17	51	0	.	0	0	0	0	0	G	1253980	A	G	1253980	3	3	8	1	0	0	0	0	1	0	0	0	10007	275	10	4	2120	4	MUC5B	11	1253980	Missense_Mutation	SNP	A	TCGA-OR-A5J8-01A-11D-A29I-10		1253980	133752536	113	1450										
KRTAP5-3	387266	bcgsc.ca	37	chr11	1629043	1629043	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.015	3	1	0.480554686685434	1.00479616306954	0.235165059441808	1	1	0	ctggactgggaacagcagggTttgcagcagctggactggca	16	9	0	0	rs12795274	by2hit2allele	TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	KRTAP5-3-92	NM_001012708	exon1	c.A573G	p.K191K	GCAGGGTTTGCAG	.	33	15	54	3	A|0.500;T|0.500	0	0	0	0	0	C	1629043	T	C	1629043	2	2	8	1	0	0	0	0	0	0	0	1	8584	1722	60	4		4	KRTAP5-3	11	1629043	Silent	SNP	T	TCGA-OR-A5J8-01A-11D-A29I-10	375063	1629043	133377473	114	1451										
MRGPRE	116534	hgsc.bcm.edu;broad.mit.edu	37	chr11	3249197	3249197	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.015	3	1	0.480554686685434	1.00479616306954	0.235165059441808	1	1	0	ccagccggaggggcagcctgCggccctgggcactgcccagg	17	16	0	0	novel		TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	MRGPRE-136	NM_001039165	exon2	c.G833A	p.R278H	AGCCTGCGGCCCT	.	76	6	23	0	.	0	0	0	0	0	T	3249197	C	T	3249197	3	4	8	1	0	0	0	0	1	0	0	0	9792	768	27	1	109	1	MRGPRE	11	3249197	Missense_Mutation	SNP	C	TCGA-OR-A5J8-01A-11D-A29I-10	1620154	3249197	131757319	115	1452										
OR51Q1	390061	broad.mit.edu	37	chr11	5443642	5443642	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.015	3	1	0.480554686685434	1.00479616306954	0.235165059441808	1	1	0	tctctccatgctggccctgaCggacctgggtctcaccctca	9	17	3	1	novel		TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	OR51Q1-69	NM_001004757	exon1	c.C212T	p.T71M	CCCTGACGGACCT	.	152	6	119	0	.	0	0	0	0	0	T	5443642	C	T	5443642	3	4	8	1	0	0	0	0	1	0	0	0	11133	536	19	1	214	1	OR51Q1	11	5443642	Missense_Mutation	SNP	C	TCGA-OR-A5J8-01A-11D-A29I-10	2194445	5443642	129562874	116	1453										
TUB	7275	ucsc.edu;bcgsc.ca	37	chr11	8123050	8123050	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.015	3	1	0.480554686685434	1.00479616306954	0.235165059441808	1	1	0	cagcggactacatcgtgatgCagtttggccgggtagcagag	15	9	0	2	novel		TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	TUB-91	NM_003320	exon13	c.C1570A	p.Q524K	GTGATGCAGTTTG	.	206	144	181	3	.	0	0	0	0	0	A	8123050	C	A	8123050	3	1	8	1	0	0	0	0	1	0	0	0	16780	711	25	3	1662	3	TUB	11	8123050	Missense_Mutation	SNP	C	TCGA-OR-A5J8-01A-11D-A29I-10	2679408	8123050	126883466	117	1454										
WEE1	7465	hgsc.bcm.edu	37	chr11	9595768	9595768	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.015	3	1	0.480554686685434	1.00479616306954	0.235165059441808	1	1	0	gaggaggacctgttgctgccCggcgcctgcccgggcgcgga	18	14	0	0	rs117347074	byfrequency;by1000genomes	TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	WEE1-1404	NM_003390	exon1	c.C288T	p.P96P	GCTGCCCGGCGCC	.	5	5	0	0	C|0.953;T|0.047	0	0	0	0	0	T	9595768	C	T	9595768	2	4	8	1	0	0	0	0	0	0	0	1	17382	639	23	1		1	WEE1	11	9595768	Silent	SNP	C	TCGA-OR-A5J8-01A-11D-A29I-10	1472718	9595768	125410748	118	1455										
LDHC	3948	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr11	18451364	18451364	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.015	3	1	0.480554686685434	1.00479616306954	0.235165059441808	1	1	0	agggagaaactcgccttgccCtggtccaacgtaatgtggct	12	11	0	1	novel		TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	LDHC-226	NM_002301	exon4	c.C325T	p.L109L	CTTGCCCTGGTCC	.	87	7	97	0	.	0	0	0	0	0	T	18451364	C	T	18451364	2	4	8	1	0	0	0	0	0	0	0	1	8724	680	24	3		3	LDHC	11	18451364	Silent	SNP	C	TCGA-OR-A5J8-01A-11D-A29I-10	8855596	18451364	116555152	119	1456										
OR1S2	219958	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	57970736	57970736	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.015	3	1	0.480554686685434	1.00479616306954	0.235165059441808	1	1	0	gcacctttcatatccttattCctcaagctgtagatgaaggg	8	10	2	2	novel		TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	OR1S2-69	NM_001004459	exon1	c.G918T	p.R306S	CTTATTCCTCAAG	.	184	51	201	0	.	0	0	0	0	0	A	57970736	C	A	57970736	3	1	8	1	0	0	0	0	1	0	0	0	11002	854	30	3	62	3	OR1S2	11	57970736	Missense_Mutation	SNP	C	TCGA-OR-A5J8-01A-11D-A29I-10	39519372	57970736	77035780	120	1457										
RPS6KA4	8986	hgsc.bcm.edu	37	chr11	64138905	64138905	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.015	3	1	0.480554686685434	1.00479616306954	0.235165059441808	1	1	0	cgggccgagcccccgtcgccTccaaaggggccccccgccga	13	21	0	0	rs17857342	byfrequency	TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	RPS6KA4-1036	NM_003942	exon17	c.T2272G	p.S758A	GTCGCCTCCAAAG	.	5	5	0	0	T|0.731;G|0.269	15	0	14	0	1	G	64138905	T	G	64138905	3	3	8	1	0	0	0	0	1	0	0	0	13688	1551	54	5	2338	5	RPS6KA4	11	64138905	Missense_Mutation	SNP	T	TCGA-OR-A5J8-01A-11D-A29I-10	6168169	64138905	70867611	121	1458										
IGHMBP2	3508	bcgsc.ca	37	chr11	68682402	68682402	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.015	3	1	0.480554686685434	1.00479616306954	0.235165059441808	1	1	0	ctgcccgcctcctggagtccAttcagcagcactccctggat	9	17	1	0	rs10896380	byfrequency	TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	IGHMBP2-90	NM_002180	exon6	c.A823G	p.I275V	GAGTCCATTCAGC	.	133	5	136	1	A|0.824;G|0.176	0	0	0	0	0	G	68682402	A	G	68682402	3	3	8	1	0	0	0	0	1	0	0	0	7612	217	8	4	845	4	IGHMBP2	11	68682402	Missense_Mutation	SNP	A	TCGA-OR-A5J8-01A-11D-A29I-10	4543497	68682402	66324114	122	1459										
DHCR7	1717	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	71149950	71149950	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.015	3	1	0.480554686685434	1.00479616306954	0.235165059441808	1	1	0	ggacgttgaccaggaccatgGcattggtcacatggctgtgg	15	9	1	1	novel		TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	DHCR7-228	NM_001163817	exon7	c.C806T	p.A269V	ACCATGGCATTGG	.	60	9	116	1	.	2	2	0	0	0	A	71149950	G	A	71149950	3	1	8	1	0	0	0	0	1	0	0	0	4488	1203	42	3	633	3	DHCR7	11	71149950	Missense_Mutation	SNP	G	TCGA-OR-A5J8-01A-11D-A29I-10	2467548	71149950	63856566	123	1460										
FAT3	120114	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	92532969	92532969	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.015	3	1	0.480554686685434	1.00479616306954	0.235165059441808	1	1	0	caataagagccagcgacgccCttactggtgctagggctgaa	12	11	0	2	novel		TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	FAT3-73	NM_001008781	exon9	c.C6790A	p.L2264I	GACGCCCTTACTG	.	136	19	158	0	.	0	0	0	0	0	A	92532969	C	A	92532969	3	1	8	1	0	0	0	0	1	0	0	0	5710	681	24	3	6824	3	FAT3	11	92532969	Missense_Mutation	SNP	C	TCGA-OR-A5J8-01A-11D-A29I-10	21383019	92532969	42473547	124	1461										
KBTBD3	143879	broad.mit.edu	37	chr11	105924412	105924412	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.015	3	1	0.480554686685434	1.00479616306954	0.235165059441808	1	1	0	ctccgtaactcgaaagactaGatcctggcaaatcaatcagg	8	11	2	2	novel		TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	KBTBD3-91	NM_152433	exon3	c.C1004A	p.S335Y	AGACTAGATCCTG	.	31	3	31	0	.	0	0	0	0	0	T	105924412	G	T	105924412	3	4	8	1	0	0	0	0	1	0	0	0	8015	942	33	3	838	3	KBTBD3	11	105924412	Missense_Mutation	SNP	G	TCGA-OR-A5J8-01A-11D-A29I-10	13391443	105924412	29082104	125	1462										
CHD4	1108	broad.mit.edu	37	chr12	6710509	6710509	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.015	3	1	0.480554686685434	1.00479616306954	0.235165059441808	1	1	0	cacctccacagggggaggtgGtggtgcaacctcagtggctg	16	11	1	0	novel		TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	CHD4-228	NM_001273	exon6	c.C745G	p.P249A	GAGGTGGTGGTGC	.	183	6	121	0	.	7	7	0	0	0	C	6710509	G	C	6710509	3	2	8	1	0	0	0	0	1	0	0	0	3333	1261	44	3	5133	3	CHD4	12	6710509	Missense_Mutation	SNP	G	TCGA-OR-A5J8-01A-11D-A29I-10		6710509	127141386	126	1463										
ZNF384	171017	hgsc.bcm.edu	37	chr12	6777081	6777081	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.015	3	1	0.480554686685434	1.00479616306954	0.235165059441808	1	1	0	ggtggctgttgctgctgctgCtgctgctgctgctgctgctg	16	11	0	0	novel		TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	ZNF384-1083	NM_001135734	exon11	c.G1533A	p.Q511Q	CTGCTGCTGCTGC	.	72	6	31	0	.	161	160	1	0	0	T	6777081	C	T	6777081	2	4	8	1	0	0	0	0	0	0	0	1	17912	796	28	3		3	ZNF384	12	6777081	Silent	SNP	C	TCGA-OR-A5J8-01A-11D-A29I-10	66572	6777081	127074814	127	1464										
USP15	9958	ucsc.edu;bcgsc.ca	37	chr12	62778065	62778065	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.015	3	1	0.480554686685434	1.00479616306954	0.235165059441808	1	1	0	tacttagttagaatggatccActtaccaaacctatgcaggt	7	9	0	1	rs2044846	byfrequency	TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	USP15-1084	NM_001252078	exon11	c.A1455G	p.P485P	GGATCCACTTACC	.	61	6	55	0	A|0.415;G|0.585	6	6	0	0	0	G	62778065	A	G	62778065	2	3	8	1	0	0	0	0	0	0	0	1	17084	146	6	4		4	USP15	12	62778065	Silent	SNP	A	TCGA-OR-A5J8-01A-11D-A29I-10	56000984	62778065	71073830	128	1465										
NUP107	57122	broad.mit.edu;bcgsc.ca	37	chr12	69129046	69129046	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.015	3	1	0.480554686685434	1.00479616306954	0.235165059441808	1	1	0	tggaaagggcatttggatgcCctaactgctgatgtgaagga	14	6	0	2	novel		TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	NUP107-629	NM_020401	exon26	c.C2424T	p.A808A	GGATGCCCTAACT	.	299	11	232	2	.	127	123	4	0	0	T	69129046	C	T	69129046	2	4	8	1	0	0	0	0	0	0	0	1	10782	610	22	3		3	NUP107	12	69129046	Silent	SNP	C	TCGA-OR-A5J8-01A-11D-A29I-10	6350981	69129046	64722849	129	1466										
AMDHD1	144193	hgsc.bcm.edu	37	chr12	96337183	96337183	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.015	3	1	0.480554686685434	1.00479616306954	0.235165059441808	1	1	0	cggcgcgaggcgacatggcaAgcggccacagcctcctgctg	15	15	0	0	rs7955450	byfrequency	TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	AMDHD1-90	NM_152435	exon1	c.A7G	p.S3G	ATGGCAAGCGGCC	.	20	20	0	0	A|0.273;G|0.727	0	0	0	0	0	G	96337183	A	G	96337183	3	3	8	1	0	0	0	0	1	0	0	0	567	72	3	4	9	4	AMDHD1	12	96337183	Missense_Mutation	SNP	A	TCGA-OR-A5J8-01A-11D-A29I-10	27208137	96337183	37514712	130	1467										
NEDD1	121441	broad.mit.edu;bcgsc.ca	37	chr12	97345221	97345221	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.015	3	1	0.480554686685434	1.00479616306954	0.235165059441808	1	1	0	tcttcctagagaagcatgccAtagggacattgtgaatttgc	10	8	1	2	novel		TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	NEDD1-90	NM_001135175	exon14	c.A1844G	p.H615R	CATGCCATAGGGA	.	171	6	128	0	.	0	0	0	0	0	G	97345221	A	G	97345221	3	3	8	1	0	0	0	0	1	0	0	0	10338	217	8	4	1898	4	NEDD1	12	97345221	Missense_Mutation	SNP	A	TCGA-OR-A5J8-01A-11D-A29I-10	1008038	97345221	36506674	131	1468										
KDM2B	84678	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	121882310	121882310	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.015	3	1	0.480554686685434	1.00479616306954	0.235165059441808	1	1	0	tcccagcagtttggaagctcGtcgttgaccacaccctctga	9	14	1	2	novel		TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	KDM2B-638	NM_032590	exon15	c.C2133G	p.D711E	AAGCTCGTCGTTG	.	154	30	118	1	.	6	2	4	0	0	C	121882310	G	C	121882310	3	2	8	1	0	0	0	0	1	0	0	0	8146	1136	40	2	1965	2	KDM2B	12	121882310	Missense_Mutation	SNP	G	TCGA-OR-A5J8-01A-11D-A29I-10	24537089	121882310	11969585	132	1469										
TMEM132D	121256	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	129558465	129558465	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.015	3	1	0.480554686685434	1.00479616306954	0.235165059441808	1	1	0	atgtagttgtgcagctctttGcagtccccagggtccagatc	11	11	1	1	novel		TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	TMEM132D-106	NM_133448	exon9	c.C3255A	p.C1085X	CTCTTTGCAGTCC	.	188	77	134	0	.	0	0	0	0	0	T	129558465	G	T	129558465	4	4	8	1	0	0	0	0	0	1	0	0	16084	1311	46	3	48	3	TMEM132D	12	129558465	Nonsense_Mutation	SNP	G	TCGA-OR-A5J8-01A-11D-A29I-10	7676155	129558465	4293430	133	1470										
PXMP2	5827	hgsc.bcm.edu	37	chr12	133264332	133264332	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.015	3	1	0.480554686685434	1.00479616306954	0.235165059441808	1	1	0	ggcgggcgctcgcccagtacCtgctcttcctgcggctctac	12	17	2	0	rs11538534	byfrequency	TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	PXMP2-90	NM_018663	exon1	c.C76T	p.L26L	CAGTACCTGCTCT	.	8	8	0	0	C|0.572;T|0.428	22	7	15	0	0	T	133264332	C	T	133264332	2	4	8	1	0	0	0	0	0	0	0	1	12885	680	24	3		3	PXMP2	12	133264332	Silent	SNP	C	TCGA-OR-A5J8-01A-11D-A29I-10	3705867	133264332	587563	134	1471										
ING1	3621	hgsc.bcm.edu	37	chr13	111368316	111368316	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.015	3	1	0.480554686685434	1.00479616306954	0.235165059441808	1	1	0	gacagtttcaggccgcatctCtgctgacccgagggtggggc	15	12	2	1	rs9555726	byfrequency	TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	ING1-515	NM_005537	exon1	c.C526T	p.L176L	GCATCTCTGCTGA	.	11	10	0	0	C|0.372;T|0.628	6	2	4	0	0	T	111368316	C	T	111368316	2	4	8	1	0	0	0	0	0	0	0	1	7756	912	32	3		3	ING1	13	111368316	Silent	SNP	C	TCGA-OR-A5J8-01A-11D-A29I-10		111368316	3801562	135	1472										
SSTR1	6751	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	38679240	38679240	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.015	3	1	0.480554686685434	1.00479616306954	0.235165059441808	1	1	0	acatgctcatgccagagcccGctcaacgctggctggtgggc	13	14	2	1	novel		TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	SSTR1-947	NM_001049	exon3	c.G646A	p.A216T	GAGCCCGCTCAAC	.	97	11	116	0	.	0	0	0	0	0	A	38679240	G	A	38679240	3	1	8	1	0	0	0	0	1	0	0	0	15234	1087	38	1	648	1	SSTR1	14	38679240	Missense_Mutation	SNP	G	TCGA-OR-A5J8-01A-11D-A29I-10		38679240	68670300	136	1473										
TRIM9	114088	hgsc.bcm.edu	37	chr14	51492067	51492067	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.015	3	1	0.480554686685434	1.00479616306954	0.235165059441808	1	1	0	gacagtccgttcagcgcctgGgagagctggctctgcaaaga	14	11	2	2	novel		TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	TRIM9-227	NM_015163	exon2	c.C834A	p.S278S	CGCCTGGGAGAGC	.	60	4	73	0	.	0	0	0	0	0	T	51492067	G	T	51492067	2	4	8	1	0	0	0	0	0	0	0	1	16587	1219	43	3		3	TRIM9	14	51492067	Silent	SNP	G	TCGA-OR-A5J8-01A-11D-A29I-10	12812827	51492067	55857473	137	1474										
FOXN3	1112	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr14	89817135	89817135	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.015	3	1	0.480554686685434	1.00479616306954	0.235165059441808	1	1	0	tctgggtctatgcaccacaaCgaccctttcccaatactctg	6	15	3	0	novel		TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	FOXN3-229	NM_005197	exon3	c.G561C	p.S187S	CCACAACGACCCT	.	85	32	90	0	.	1	1	0	0	0	G	89817135	C	G	89817135	2	3	8	1	0	0	0	0	0	0	0	1	6040	523	19	2		2	FOXN3	14	89817135	Silent	SNP	C	TCGA-OR-A5J8-01A-11D-A29I-10	38325068	89817135	17532405	138	1475										
CCDC88C	440193	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr14	91739504	91739504	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.015	3	1	0.480554686685434	1.00479616306954	0.235165059441808	1	1	0	gggccaggctatgggagctgGggggtgcggggctttgcagg	23	7	0	0	novel		TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	CCDC88C-25	NM_001080414	exon30	c.C5552T	p.P1851L	GAGCTGGGGGGTG	.	44	7	40	0	.	4	4	0	0	0	A	91739504	G	A	91739504	3	1	8	1	0	0	0	0	1	0	0	0	2871	1232	43	3	538	3	CCDC88C	14	91739504	Missense_Mutation	SNP	G	TCGA-OR-A5J8-01A-11D-A29I-10	1922369	91739504	15610036	139	1476										
HHIPL1	84439	hgsc.bcm.edu	37	chr14	100141689	100141689	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.015	3	1	0.480554686685434	1.00479616306954	0.235165059441808	1	1	0	cgggcgcgtggaggtgttcgTgggcggacgctggggcaccg	22	10	0	0	rs7158073	byfrequency	TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	HHIPL1-70	NM_001127258	exon9	c.T2075C	p.V692A	TGTTCGTGGGCGG	.	37	9	0	0	T|0.478;C|0.522	1	1	0	0	0	C	100141689	T	C	100141689	3	2	8	1	0	0	0	0	1	0	0	0	7114	1696	59	4	2210	4	HHIPL1	14	100141689	Missense_Mutation	SNP	T	TCGA-OR-A5J8-01A-11D-A29I-10	8402185	100141689	7207851	140	1477										
BEGAIN	57596	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	101011366	101011366	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.015	3	1	0.480554686685434	1.00479616306954	0.235165059441808	1	1	0	cagcttgtcctccagctcctGgttgatcctctgcagtgcca	9	15	1	1	novel		TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	BEGAIN-68	NM_020836	exon4	c.C214T	p.Q72X	GCTCCTGGTTGAT	.	58	12	60	0	.	2	2	0	0	0	A	101011366	G	A	101011366	4	1	8	1	0	0	0	0	0	1	0	0	1398	1357	47	3	1583	3	BEGAIN	14	101011366	Nonsense_Mutation	SNP	G	TCGA-OR-A5J8-01A-11D-A29I-10	869677	101011366	6338174	141	1478										
KIF26A	26153	hgsc.bcm.edu	37	chr14	104644168	104644168	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.015	3	1	0.480554686685434	1.00479616306954	0.235165059441808	1	1	0	tccgcccctgactccatgagCgagagtggggctgcctcccc	12	17	0	3	rs201501169		TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	KIF26A-24	NM_015656	exon12	c.C5043T	p.S1681S	CATGAGCGAGAGT	.	5	5	1	0	C|0.998;T|0.002	0	0	0	0	0	T	104644168	C	T	104644168	2	4	8	1	0	0	0	0	0	0	0	1	8315	767	27	1		1	KIF26A	14	104644168	Silent	SNP	C	TCGA-OR-A5J8-01A-11D-A29I-10	3632802	104644168	2705372	142	1479										
RYR3	6263	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	33962729	33962729	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.015	3	1	0.480554686685434	1.00479616306954	0.235165059441808	1	1	0	cccaagccagagaaggagcaGccgacggaggaggaggagag	18	9	0	2	novel		TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	RYR3-520	NM_001243996	exon38	c.G5832T	p.Q1944H	GGAGCAGCCGACG	.	77	12	79	0	.	0	0	0	0	0	T	33962729	G	T	33962729	3	4	8	1	0	0	0	0	1	0	0	0	13805	962	34	3	5982	3	RYR3	15	33962729	Missense_Mutation	SNP	G	TCGA-OR-A5J8-01A-11D-A29I-10		33962729	68568663	143	1480										
PLA2G4E	123745	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr15	42297141	42297141	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.015	3	1	0.480554686685434	1.00479616306954	0.235165059441808	1	1	0	cctgggcctactcacctctcCtccagcaggaactccacctc	6	20	2	0	novel		TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	.	NM_001206670	exon5	c.G561T	p.E187D	CCTCTCCTCCAGC	.	149	12	159	0	.	0	0	0	0	0	A	42297141	C	A	42297141	3	1	8	1	0	0	0	0	1	0	0	0	12034	680	24	3	2109	3	PLA2G4E	15	42297141	Missense_Mutation	SNP	C	TCGA-OR-A5J8-01A-11D-A29I-10	8334412	42297141	60234251	144	1481										
SLC30A4	7782	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	45814279	45814279	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.015	3	1	0.480554686685434	1.00479616306954	0.235165059441808	1	1	0	gcagttgtcacaggagtccaCcttcaaactcagctgactgt	9	12	3	1	novel		TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	SLC30A4-90	NM_013309	exon2	c.G274C	p.V92L	AGTCCACCTTCAA	.	175	106	166	1	.	3	0	3	0	0	G	45814279	C	G	45814279	3	3	8	1	0	0	0	0	1	0	0	0	14592	507	18	3	1043	3	SLC30A4	15	45814279	Missense_Mutation	SNP	C	TCGA-OR-A5J8-01A-11D-A29I-10	3517138	45814279	56717113	145	1482										
DMXL2	23312	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr15	51755647	51755647	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.015	3	1	0.480554686685434	1.00479616306954	0.235165059441808	1	1	0	aaggacctcttgtttaacaaGgaaatgccaaagtcgtttga	9	7	1	1	novel		TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	DMXL2-99	NM_001174116	exon33	c.C7855T	p.L2619F	TAACAAGGAAATG	.	153	101	124	0	.	5	2	3	0	0	A	51755647	G	A	51755647	3	1	8	1	0	0	0	0	1	0	0	0	4606	1000	35	3	1302	3	DMXL2	15	51755647	Missense_Mutation	SNP	G	TCGA-OR-A5J8-01A-11D-A29I-10	5941368	51755647	50775745	146	1483										
LACTB	114294	hgsc.bcm.edu	37	chr15	63414083	63414083	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.015	3	1	0.480554686685434	1.00479616306954	0.235165059441808	1	1	0	gagacgccatgtaccggctcAtgtcagcagtgactgcccgg	13	13	2	2	rs34317102	byfrequency	TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	LACTB-90	NM_171846	exon1	c.A13C	p.M5L	CGGCTCATGTCAG	.	6	6	0	0	A|0.226;C|0.774	0	0	0	0	0	C	63414083	A	C	63414083	3	2	8	1	0	0	0	0	1	0	0	0	8619	217	8	5	15	5	LACTB	15	63414083	Missense_Mutation	SNP	A	TCGA-OR-A5J8-01A-11D-A29I-10	11658436	63414083	39117309	147	1484										
CHD2	1106	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	93522377	93522377	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.015	3	1	0.480554686685434	1.00479616306954	0.235165059441808	1	1	0	tcctacaggtaaatatttacCgcttagttacaaaggggact	8	8	0	0	novel		TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	CHD2-229	NM_001271	exon22	c.C2740T	p.R914C	ATTTACCGCTTAG	.	57	6	57	0	.	0	0	0	0	0	T	93522377	C	T	93522377	3	4	8	1	0	0	0	0	1	0	0	0	3331	652	23	1	2826	1	CHD2	15	93522377	Missense_Mutation	SNP	C	TCGA-OR-A5J8-01A-11D-A29I-10	30108294	93522377	9009015	148	1485										
EME2	197342	hgsc.bcm.edu	37	chr16	1823444	1823444	+	Silent	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.015	3	1	0.480554686685434	1.00479616306954	0.235165059441808	1	1	0	ctgctgcggccggagcaggtCctgaagcgcctcgcggtgtg	17	13	0	1	rs761065		TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	EME2-229	NM_001257370	exon1	c.C216G	p.V72V	GCAGGTCCTGAAG	.	9	9	0	0	C|0.615;G|0.385	0	0	0	0	0	G	1823444	C	G	1823444	2	3	8	1	0	0	0	0	0	0	0	1	5102	842	30	3		3	EME2	16	1823444	Silent	SNP	C	TCGA-OR-A5J8-01A-11D-A29I-10		1823444	88531309	149	1486										
ZNF598	90850	hgsc.bcm.edu	37	chr16	2059674	2059674	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.015	3	1	0.480554686685434	1.00479616306954	0.235165059441808	1	1	0	acagcacgcagctcccgcctTcccgctcaggagctgccgcc	10	20	1	0	rs71384660		TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	ZNF598-432	NM_178167	exon2	c.A74G	p.E25G	CCGCCTTCCCGCT	.	6	6	0	0	T|0.007;C|0.993	0	0	0	0	0	C	2059674	T	C	2059674	3	2	8	1	0	0	0	0	1	0	0	0	18065	1770	62	4	2689	4	ZNF598	16	2059674	Missense_Mutation	SNP	T	TCGA-OR-A5J8-01A-11D-A29I-10	236230	2059674	88295079	150	1487										
PRSS27	83886	broad.mit.edu	37	chr16	2762757	2762757	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.015	3	1	0.480554686685434	1.00479616306954	0.235165059441808	1	1	0	agccctcaccccagctgatcAcccccgcctgcagccacgac	7	22	2	1	novel		TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	PRSS27-91	NM_031948	exon6	c.T737G	p.V246G	CTGATCACCCCCG	.	106	21	45	2	.	0	0	0	0	0	C	2762757	A	C	2762757	3	2	8	1	0	0	0	0	1	0	0	0	12653	159	6	5	139	5	PRSS27	16	2762757	Missense_Mutation	SNP	A	TCGA-OR-A5J8-01A-11D-A29I-10	703083	2762757	87591996	151	1488										
DNAH3	55567	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	20974923	20974923	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.015	3	1	0.480554686685434	1.00479616306954	0.235165059441808	1	1	0	ggccatgcagtttgggtaagGcagatgcacggacaatctct	13	9	1	1	novel		TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	DNAH3-167	NM_017539	exon53	c.C10283A	p.A3428D	GGTAAGGCAGATG	.	101	17	107	1	.	1	0	1	0	0	T	20974923	G	T	20974923	3	4	8	1	0	0	0	0	1	0	0	0	4614	1203	42	3	2106	3	DNAH3	16	20974923	Missense_Mutation	SNP	G	TCGA-OR-A5J8-01A-11D-A29I-10	18212166	20974923	69379830	152	1489										
CHD9	80205	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	53326859	53326859	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.015	3	1	0.480554686685434	1.00479616306954	0.235165059441808	1	1	0	taataaaaacagacaaattcAgcagatacaaccgactttct	4	9	2	2	novel		TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	CHD9-272	NM_025134	exon29	c.A5405G	p.Q1802R	AAATTCAGCAGAT	.	152	20	170	0	.	2	2	0	0	0	G	53326859	A	G	53326859	3	3	8	1	0	0	0	0	1	0	0	0	3338	188	7	4	5515	4	CHD9	16	53326859	Missense_Mutation	SNP	A	TCGA-OR-A5J8-01A-11D-A29I-10	32351936	53326859	37027894	153	1490										
C17orf97	400566	hgsc.bcm.edu	37	chr17	260182	260182	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.015	3	1	0.480554686685434	1.00479616306954	0.235165059441808	1	1	0	tccgcgctgagagtcgccgaTtagtcggcatcgggcctcgg	15	13	0	1	rs7502594		TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	C17orf97-91	NM_001013672	exon1	c.T49C	p.L17L	CGCCGATTAGTCG	.	35	7	2	0	T|0.657;C|0.343	0	0	0	0	0	C	260182	T	C	260182	2	2	8	1	0	0	0	0	0	0	0	1	1898	1490	52	4		4	C17orf97	17	260182	Silent	SNP	T	TCGA-OR-A5J8-01A-11D-A29I-10		260182	80935028	154	1491										
SGSM2	9905	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	2280076	2280076	+	Missense_Mutation	SNP	C	C	A													0.015	3	1	0.480554686685434	1.00479616306954	0.235165059441808	1	1	0	atgtgcagggcatgtgcgatCtgctggcgcctctcctggtc					novel		TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	SGSM2-68	NM_014853	exon20	c.C2659A	p.L887M	TGCGATCTGCTGG	.	101	10	78	0	.	16	16	0	0	0	A	2280076	C	A	2280076	3	1	8	1	0	0	0	0	1	0	0	0	14258	912	32	3	2737	3	SGSM2	17	2280076	Missense_Mutation	SNP	C	TCGA-OR-A5J8-01A-11D-A29I-10	2019894	2280076	78915134	155	1492	16	2								
SGSM2	9905	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	2280078	2280078	+	Silent	SNP	G	G	T													0.015	3	1	0.480554686685434	1.00479616306954	0.235165059441808	1	1	0	gtgcagggcatgtgcgatctGctggcgcctctcctggtcac					novel		TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	SGSM2-68	NM_014853	exon20	c.G2661T	p.L887L	CGATCTGCTGGCG	.	101	10	76	0	.	17	17	0	0	0	T	2280078	G	T	2280078	2	4	8	1	0	0	0	0	0	0	0	1	14258	1306	46	3		3	SGSM2	17	2280078	Silent	SNP	G	TCGA-OR-A5J8-01A-11D-A29I-10	2	2280078	78915132	156	1493	16	2								
SPNS2	124976	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	4436414	4436414	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.015	3	1	0.480554686685434	1.00479616306954	0.235165059441808	1	1	0	gcaacagcccgccctgtgggGccaaggacaggtggggcccc	16	15	0	0	novel		TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	SPNS2-68	NM_001124758	exon7	c.G1078T	p.A360S	TGTGGGGCCAAGG	.	75	8	60	1	.	0	0	0	0	0	T	4436414	G	T	4436414	3	4	8	1	0	0	0	0	1	0	0	0	15112	1203	42	3	1104	3	SPNS2	17	4436414	Missense_Mutation	SNP	G	TCGA-OR-A5J8-01A-11D-A29I-10	2156336	4436414	76758796	157	1494										
GLTPD2	388323	hgsc.bcm.edu	37	chr17	4693342	4693342	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.015	3	1	0.480554686685434	1.00479616306954	0.235165059441808	1	1	0	ggcgcgctgggaggcccggaCgcgggcgtgcagtgcagcga	21	12	0	0	rs35910358		TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	GLTPD2-68	NM_001014985	exon4	c.C627A	p.D209E	CCCGGACGCGGGC	.	9	9	0	0	C|0.015;A|0.985	1	0	1	0	0	A	4693342	C	A	4693342	3	1	8	1	0	0	0	0	1	0	0	0	6493	535	19	2	641	2	GLTPD2	17	4693342	Missense_Mutation	SNP	C	TCGA-OR-A5J8-01A-11D-A29I-10	256928	4693342	76501868	158	1495										
TP53	7157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	7579312	7579312	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.015	3	1	0.480554686685434	1.00479616306954	0.235165059441808	1	1	0	agcccctcagggcaactgacCgtgcaagtcacagacttggc	11	14	2	2	rs55863639		TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	TP53-70225	NM_000546	exon4	c.G375T	p.T125T	ACTGACCGTGCAA	.	193	118	141	0	.	10	0	10	0	0	A	7579312	C	A	7579312	2	1	8	1	0	0	0	0	0	0	0	1	16419	666	23	2		2	TP53	17	7579312	Silent	SNP	C	TCGA-OR-A5J8-01A-11D-A29I-10	2885970	7579312	73615898	159	1496										
WDR16	146845	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	9542007	9542007	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.015	3	1	0.480554686685434	1.00479616306954	0.235165059441808	1	1	0	cctgaggagttccagatcatCaccagcggaacagacagaaa	10	11	2	4	novel		TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	WDR16-71	NM_145054	exon12	c.C1554A	p.I518I	GATCATCACCAGC	.	111	69	106	0	.	0	0	0	0	0	A	9542007	C	A	9542007	2	1	8	1	0	0	0	0	0	0	0	1	17314	816	29	3		3	WDR16	17	9542007	Silent	SNP	C	TCGA-OR-A5J8-01A-11D-A29I-10	1962695	9542007	71653203	160	1497										
SARM1	23098	hgsc.bcm.edu	37	chr17	26699367	26699368	+	Frame_Shift_Ins	INS	-	-	C													0.015	3	1	0.480554686685434	1.00479616306954	0.235165059441808	1	1	0	tggaggaggcctggctgctgINScggccgtgggccgcgaggta					rs34421136		TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	.	NM_015077	exon2	c.313_314insC	p.A105fs	GCTGCTGCGGCCG	.	12	12	0	0	-|0.009;C|0.991	0	0	0	0	0	C	26699368	-	C	26699367	7	5	8	1	0	1	1	0	0	0	0	0	13877	1319	46	0	316	0	SARM1	17	26699367	Frame_Shift_Ins	INS	-	TCGA-OR-A5J8-01A-11D-A29I-10	17157360	26699367	54495843	161	1498										
NF1	4763	bcgsc.ca	37	chr17	29560115	29560115	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.015	3	1	0.480554686685434	1.00479616306954	0.235165059441808	1	1	0	cagaatttgacacacttgcaGaaacagtattggctgatcgg	10	8	0	4	novel		TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	NF1-3353	NM_000267	exon27	c.G3592T	p.E1198X	CTTGCAGAAACAG	.	250	151	241	5	.	0	0	0	0	0	T	29560115	G	T	29560115	4	4	8	1	0	0	0	0	0	1	0	0	10385	943	33	3	3759	3	NF1	17	29560115	Nonsense_Mutation	SNP	G	TCGA-OR-A5J8-01A-11D-A29I-10	2860748	29560115	51635095	162	1499										
KRT17	3872	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	39780559	39780559	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.015	3	1	0.480554686685434	1.00479616306954	0.235165059441808	1	1	0	ccccaaagctgctgccatagCcaccaccagagccaaagctg	8	17	0	1	novel		TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	KRT17-92	NM_000422	exon1	c.G203T	p.G68V	CCATAGCCACCAC	.	343	39	215	0	.	0	0	0	0	0	A	39780559	C	A	39780559	3	1	8	1	0	0	0	0	1	0	0	0	8475	739	26	3	1127	3	KRT17	17	39780559	Missense_Mutation	SNP	C	TCGA-OR-A5J8-01A-11D-A29I-10	10220444	39780559	41414651	163	1500										
HSD17B1	3292	hgsc.bcm.edu	37	chr17	40706906	40706906	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.015	3	1	0.480554686685434	1.00479616306954	0.235165059441808	1	1	0	cagaggacgaggccgggcgcGgtgcggtgggggaccctgag	22	10	0	2	rs605059	byfrequency	TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	HSD17B1-90	NM_000413	exon6	c.G937A	p.G313S	GGGCGCGGTGCGG	.	8	8	0	0	G|0.505;A|0.495	4	0	4	0	0	A	40706906	G	A	40706906	3	1	8	1	0	0	0	0	1	0	0	0	7399	1116	39	1	959	1	HSD17B1	17	40706906	Missense_Mutation	SNP	G	TCGA-OR-A5J8-01A-11D-A29I-10	926347	40706906	40488304	164	1501										
ABCC3	8714	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr17	48746781	48746781	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.015	3	1	0.480554686685434	1.00479616306954	0.235165059441808	1	1	0	cttcaggaaaacgtgcttttCggcaaagccctgaaccccaa	8	13	1	1	novel		TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	ABCC3-93	NM_003786	exon17	c.C2133A	p.F711L	GCTTTTCGGCAAA	.	141	12	105	0	.	0	0	0	0	0	A	48746781	C	A	48746781	3	1	8	1	0	0	0	0	1	0	0	0	54	883	31	2	2283	2	ABCC3	17	48746781	Missense_Mutation	SNP	C	TCGA-OR-A5J8-01A-11D-A29I-10	8039875	48746781	32448429	165	1502										
APPBP2	10513	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	58525008	58525008	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.015	3	1	0.480554686685434	1.00479616306954	0.235165059441808	1	1	0	accacttcttcagtggactgGgggctggtgctgacatcttc	12	11	3	1	novel		TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	APPBP2-226	NM_006380	exon13	c.C1692T	p.P564P	GGACTGGGGGCTG	.	150	18	102	0	.	24	23	1	0	0	A	58525008	G	A	58525008	2	1	8	1	0	0	0	0	0	0	0	1	816	1219	43	3		3	APPBP2	17	58525008	Silent	SNP	G	TCGA-OR-A5J8-01A-11D-A29I-10	9778227	58525008	22670202	166	1503										
GRIN2C	2905	broad.mit.edu;bcgsc.ca	37	chr17	72842224	72842224	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.015	3	1	0.480554686685434	1.00479616306954	0.235165059441808	1	1	0	ccgtcccccaggaactgcaaGagcgccaggtctatggcccg	12	16	1	1	rs41282061	byfrequency	TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	GRIN2C-228	NM_000835	exon11	c.C2331G	p.L777L	CTGCAAGAGCGCC	.	153	6	127	0	G|0.997;C|0.003	1	1	0	0	0	C	72842224	G	C	72842224	2	2	8	1	0	0	0	0	0	0	0	1	6802	929	33	3		3	GRIN2C	17	72842224	Silent	SNP	G	TCGA-OR-A5J8-01A-11D-A29I-10	14317216	72842224	8352986	167	1504										
FADS6	283985	ucsc.edu	37	chr17	72889676	72889676	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.015	3	1	0.480554686685434	1.00479616306954	0.235165059441808	1	1	0	atgggctccgtaggttccatGggctccgtgggttccatgga	15	10	0	0	rs4319809	byfrequency	TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	FADS6-22	NM_178128	exon1	c.C18G	p.P6P	TTCCATGGGCTCC	.	204	115	54	2	G|0.586;C|0.414	0	0	0	0	0	C	72889676	G	C	72889676	2	2	8	1	0	0	0	0	0	0	0	1	5384	1335	47	3		3	FADS6	17	72889676	Silent	SNP	G	TCGA-OR-A5J8-01A-11D-A29I-10	47452	72889676	8305534	168	1505										
NT5C	30833	hgsc.bcm.edu	37	chr17	73127683	73127683	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.015	3	1	0.480554686685434	1.00479616306954	0.235165059441808	1	1	0	cgggccaggaagccgcggcgTtgctccagcggcacgtgcgg	18	14	0	0	rs4788867	byfrequency	TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	NT5C-90	NM_001252377	exon1	c.A120G	p.Q40Q	GCGGCGTTGCTCC	.	5	5	0	0	T|0.502;C|0.498	8	6	2	0	0	C	73127683	T	C	73127683	2	2	8	1	0	0	0	0	0	0	0	1	10713	1722	60	4		4	NT5C	17	73127683	Silent	SNP	T	TCGA-OR-A5J8-01A-11D-A29I-10	238007	73127683	8067527	169	1506										
EVPL	2125	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	74003739	74003739	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.015	3	1	0.480554686685434	1.00479616306954	0.235165059441808	1	1	0	tgcccagtgatggggtccagCatgttcttggccacggccgt	14	12	1	1	novel		TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	EVPL-93	NM_001988	exon22	c.G5547T	p.M1849I	GTCCAGCATGTTC	.	81	22	79	0	.	0	0	0	0	0	A	74003739	C	A	74003739	3	1	8	1	0	0	0	0	1	0	0	0	5305	710	25	3	558	3	EVPL	17	74003739	Missense_Mutation	SNP	C	TCGA-OR-A5J8-01A-11D-A29I-10	876056	74003739	7191471	170	1507										
FOXJ1	2302	hgsc.bcm.edu	37	chr17	74133974	74133974	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.015	3	1	0.480554686685434	1.00479616306954	0.235165059441808	1	1	0	tgctgggcctcggtattcacCgtcagcggcccggcccgggg	16	15	2	0	rs894542	byfrequency	TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	FOXJ1-227	NM_001454	exon3	c.G726A	p.T242T	ATTCACCGTCAGC	.	18	5	1	0	C|0.925;T|0.075	0	0	0	0	0	T	74133974	C	T	74133974	2	4	8	1	0	0	0	0	0	0	0	1	6030	639	23	1		1	FOXJ1	17	74133974	Silent	SNP	C	TCGA-OR-A5J8-01A-11D-A29I-10	130235	74133974	7061236	171	1508										
RBBP8	5932	broad.mit.edu	37	chr18	20602106	20602106	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.015	3	1	0.480554686685434	1.00479616306954	0.235165059441808	1	1	0	tattagtattatgcagatatGccagcagaagaaagagaaaa	9	4	0	4	novel		TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	RBBP8-659	NM_002894	exon18	c.G2469T	p.M823I	AGATATGCCAGCA	.	68	3	56	2	.	1	1	0	0	0	T	20602106	G	T	20602106	3	4	8	1	0	0	0	0	1	0	0	0	13140	1319	46	3	2535	3	RBBP8	18	20602106	Missense_Mutation	SNP	G	TCGA-OR-A5J8-01A-11D-A29I-10		20602106	57475142	172	1509										
RAX	30062	hgsc.bcm.edu	37	chr18	56940307	56940307	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.015	3	1	0.480554686685434	1.00479616306954	0.235165059441808	1	1	0	aaggtgccgaggatcccgtcGtccttggtaaaccccaggat	12	12	0	0	rs2271733	byfrequency	TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	RAX-90	NM_013435	exon1	c.C132A	p.D44E	CCCGTCGTCCTTG	.	10	7	0	0	G|0.801;T|0.199	0	0	0	0	0	T	56940307	G	T	56940307	3	4	8	1	0	0	0	0	1	0	0	0	13131	1136	40	2	920	2	RAX	18	56940307	Missense_Mutation	SNP	G	TCGA-OR-A5J8-01A-11D-A29I-10	36338201	56940307	21136941	173	1510										
ZNF236	7776	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr18	74637402	74637402	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.015	3	1	0.480554686685434	1.00479616306954	0.235165059441808	1	1	0	tcctcaactcctcctctactGacccaaacgtgtttatcatg	4	15	3	1	novel		TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	ZNF236-94	NM_007345	exon22	c.G3913C	p.D1305H	TCTACTGACCCAA	.	160	19	143	0	.	0	0	0	0	0	C	74637402	G	C	74637402	3	2	8	1	0	0	0	0	1	0	0	0	17826	1290	45	3	3999	3	ZNF236	18	74637402	Missense_Mutation	SNP	G	TCGA-OR-A5J8-01A-11D-A29I-10	17697095	74637402	3439846	174	1511										
ARID3A	1820	hgsc.bcm.edu	37	chr19	929741	929741	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.015	3	1	0.480554686685434	1.00479616306954	0.235165059441808	1	1	0	atgcgggctgcagctgcgggCctgggacacccagccagccc	15	16	0	0	rs34967265	byfrequency	TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	ARID3A-90	NM_005224	exon2	c.C213T	p.G71G	TGCGGGCCTGGGA	.	15	12	0	0	C|0.865;T|0.135	0	0	0	0	0	T	929741	C	T	929741	2	4	8	1	0	0	0	0	0	0	0	1	916	726	26	3		3	ARID3A	19	929741	Silent	SNP	C	TCGA-OR-A5J8-01A-11D-A29I-10		929741	58199242	175	1512										
GRIN3B	116444	hgsc.bcm.edu	37	chr19	1009485	1009485	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.015	3	1	0.480554686685434	1.00479616306954	0.235165059441808	1	1	0	aggccctggtgcggcgcggcCagctcctggcacagctcggg	17	15	0	0	rs10401245	byfrequency	TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	GRIN3B-90	NM_138690	exon9	c.C3016G	p.Q1006E	CGCGGCCAGCTCC	.	6	6	0	0	C|0.474;G|0.526	0	0	0	0	0	G	1009485	C	G	1009485	3	3	8	1	0	0	0	0	1	0	0	0	6805	595	21	3	3050	3	GRIN3B	19	1009485	Missense_Mutation	SNP	C	TCGA-OR-A5J8-01A-11D-A29I-10	79744	1009485	58119498	176	1513										
ABCA7	10347	hgsc.bcm.edu	37	chr19	1065044	1065044	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.015	3	1	0.480554686685434	1.00479616306954	0.235165059441808	1	1	0	ctgcgcgaggcacatggaggCcgcctgcgcttccagctgcc	14	16	0	0	rs4147935	byfrequency	TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	ABCA7-98	NM_019112	exon46	c.C6159T	p.G2053G	TGGAGGCCGCCTG	.	24	12	2	0	C|0.766;T|0.234	4	0	4	0	0	T	1065044	C	T	1065044	2	4	8	1	0	0	0	0	0	0	0	1	37	726	26	3		3	ABCA7	19	1065044	Silent	SNP	C	TCGA-OR-A5J8-01A-11D-A29I-10	55559	1065044	58063939	177	1514										
FAM108A1	81926	broad.mit.edu	37	chr19	1881329	1881329	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.015	3	1	0.480554686685434	1.00479616306954	0.235165059441808	1	1	0	atggtgtccagctcgcgctgGctgtactggaagtcggcacg	15	11	0	0	novel		TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	FAM108A1-90	NM_031213	exon2	c.C237T	p.S79S	GCGCTGGCTGTAC	.	95	5	45	1	.	152	152	0	0	0	A	1881329	G	A	1881329	2	1	8	1	0	0	0	0	0	0	0	1	5407	1194	42	3		3	FAM108A1	19	1881329	Silent	SNP	G	TCGA-OR-A5J8-01A-11D-A29I-10	816285	1881329	57247654	178	1515										
FUT3	2525	broad.mit.edu;bcgsc.ca	37	chr19	5844077	5844077	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.015	3	1	0.480554686685434	1.00479616306954	0.235165059441808	1	1	0	agggcgttcctccacagcttCtcggtgatgtagtcggggtg	15	10	1	1	novel		TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	FUT3-90	NM_001097640	exon3	c.G774T	p.E258D	CAGCTTCTCGGTG	.	427	48	393	1	.	0	0	0	0	0	A	5844077	C	A	5844077	3	1	8	1	0	0	0	0	1	0	0	0	6124	912	32	3	315	3	FUT3	19	5844077	Missense_Mutation	SNP	C	TCGA-OR-A5J8-01A-11D-A29I-10	3962748	5844077	53284906	179	1516										
KANK3	256949	hgsc.bcm.edu	37	chr19	8399628	8399628	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.015	3	1	0.480554686685434	1.00479616306954	0.235165059441808	1	1	0	accccgcgctggtgctccagActggcgcgcagcagctctag	13	16	1	1	rs710949	byfrequency	TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	KANK3-90	NM_198471	exon3	c.T1083C	p.S361S	CTCCAGACTGGCG	.	8	8	0	0	A|0.411;G|0.589	0	0	0	0	0	G	8399628	A	G	8399628	2	3	8	1	0	0	0	0	0	0	0	1	7999	272	10	4		4	KANK3	19	8399628	Silent	SNP	A	TCGA-OR-A5J8-01A-11D-A29I-10	2555551	8399628	50729355	180	1517										
CACNA1A	773	hgsc.bcm.edu	37	chr19	13319693	13319693	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.015	3	1	0.480554686685434	1.00479616306954	0.235165059441808	1	1	0	tccttgtcggggggcgggggAtggtggtggtggtggtggtg	25	4	0	0	rs16051	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	CACNA1A-67	NM_001127221	exon46	c.T6660C	p.H2220H	CGGGGGATGGTGG	.	14	12	4	0	A|0.360;G|0.640	0	0	0	0	0	G	13319693	A	G	13319693	2	3	8	1	0	0	0	0	0	0	0	1	2544	330	12	4		4	CACNA1A	19	13319693	Silent	SNP	A	TCGA-OR-A5J8-01A-11D-A29I-10	4920065	13319693	45809290	181	1518										
RINL	126432	hgsc.bcm.edu	37	chr19	39360720	39360720	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.015	3	1	0.480554686685434	1.00479616306954	0.235165059441808	1	1	0	ggctccgcaaggcgggggcgGggctctgcccttccggtccc	17	16	1	0	rs8110393		TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	RINL-91	NM_001195833	exon9	c.C1205T	p.P402L	GGGGCGGGGCTCT	.	25	25	0	0	G|0.349;A|0.651	0	0	0	0	0	A	39360720	G	A	39360720	3	1	8	1	0	0	0	0	1	0	0	0	13410	1232	43	3	511	3	RINL	19	39360720	Missense_Mutation	SNP	G	TCGA-OR-A5J8-01A-11D-A29I-10	26041027	39360720	19768263	182	1519										
ZNF221	7638	ucsc.edu;bcgsc.ca	37	chr19	44470147	44470147	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.015	3	1	0.480554686685434	1.00479616306954	0.235165059441808	1	1	0	caagactatctataagtcacGtgcaacagaaaccttaccgt	6	11	2	2	rs16976937	byfrequency	TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	ZNF221-91	NM_013359	exon6	c.G493A	p.V165M	AGTCACGTGCAAC	.	205	114	194	2	G|0.935;A|0.065	0	0	0	0	0	A	44470147	G	A	44470147	3	1	8	1	0	0	0	0	1	0	0	0	17812	1145	40	1	507	1	ZNF221	19	44470147	Missense_Mutation	SNP	G	TCGA-OR-A5J8-01A-11D-A29I-10	5109427	44470147	14658836	183	1520										
NTN5	126147	hgsc.bcm.edu	37	chr19	49164952	49164952	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.015	3	1	0.480554686685434	1.00479616306954	0.235165059441808	1	1	0	gtctagtgctccggcctgggActgggtgtgggtgcccgcac	17	12	1	0	rs281392	byfrequency	TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	NTN5-136	NM_145807	exon7	c.T1452C	p.S484S	CCTGGGACTGGGT	.	4	4	0	0	A|0.464;G|0.536	2	0	2	0	0	G	49164952	A	G	49164952	2	3	8	1	0	0	0	0	0	0	0	1	10732	272	10	4		4	NTN5	19	49164952	Silent	SNP	A	TCGA-OR-A5J8-01A-11D-A29I-10	4694805	49164952	9964031	184	1521										
PPP1R15A	23645	bcgsc.ca	37	chr19	49377436	49377436	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.015	3	1	0.480554686685434	1.00479616306954	0.235165059441808	1	1	0	aagaggagggtgaggtcaagGctttgggggcagctgagaag	20	4	1	3	rs556052	byfrequency	TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	PPP1R15A-226	NM_014330	exon2	c.G946C	p.A316P	GTCAAGGCTTTGG	.	123	6	140	0	G|0.500;C|0.500	133	132	0	1	0	C	49377436	G	C	49377436	3	2	8	1	0	0	0	0	1	0	0	0	12395	1203	42	3	948	3	PPP1R15A	19	49377436	Missense_Mutation	SNP	G	TCGA-OR-A5J8-01A-11D-A29I-10	212484	49377436	9751547	185	1522										
HAS1	3036	hgsc.bcm.edu	37	chr19	52223026	52223026	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.015	3	1	0.480554686685434	1.00479616306954	0.235165059441808	1	1	0	ccgtagcgatcggaggccagCggcaccccggcggcgtaggc	17	15	0	0	rs61736497	byfrequency	TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	HAS1-92	NM_001523	exon2	c.G135T	p.P45P	GGCCAGCGGCACC	.	53	17	2	0	C|0.946;A|0.054	0	0	0	0	0	A	52223026	C	A	52223026	2	1	8	1	0	0	0	0	0	0	0	1	6982	755	27	2		2	HAS1	19	52223026	Silent	SNP	C	TCGA-OR-A5J8-01A-11D-A29I-10	2845590	52223026	6905957	186	1523										
HSPBP1	23640	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	chr19	55785775	55785775	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.015	3	1	0.480554686685434	1.00479616306954	0.235165059441808	1	1	0	cggacactcacaggagatggCgaagagggccttgacgcgca	15	11	1	3	novel		TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	HSPBP1-90	NM_012267	exon4	c.G631T	p.A211S	AGATGGCGAAGAG	.	37	20	13	0	.	0	0	0	0	0	A	55785775	C	A	55785775	3	1	8	1	0	0	0	0	1	0	0	0	7447	768	27	2	468	2	HSPBP1	19	55785775	Missense_Mutation	SNP	C	TCGA-OR-A5J8-01A-11D-A29I-10	3562749	55785775	3343208	187	1524										
ZNF579	163033	hgsc.bcm.edu	37	chr19	56090493	56090493	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.015	3	1	0.480554686685434	1.00479616306954	0.235165059441808	1	1	0	tcccccgcaggccacgtctcAggccacgctgcgaccgcctc	10	21	1	0	rs12974617	byfrequency	TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	ZNF579-90	NM_152600	exon2	c.T513G	p.P171P	CGTCTCAGGCCAC	.	6	6	0	0	A|0.837;C|0.163	2	0	2	0	0	C	56090493	A	C	56090493	2	2	8	1	0	0	0	0	0	0	0	1	18048	175	7	5		5	ZNF579	19	56090493	Silent	SNP	A	TCGA-OR-A5J8-01A-11D-A29I-10	304718	56090493	3038490	188	1525										
TCF15	6939	hgsc.bcm.edu	37	chr20	590456	590456	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.015	3	1	0.480554686685434	1.00479616306954	0.235165059441808	1	1	0	cccttggcactgcccgcggcAcggaagcacggctgcccgtc	13	18	0	0	rs282164	byfrequency	TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	TCF15-90	NM_004609	exon1	c.T426C	p.R142R	CGCGGCACGGAAG	.	9	9	0	0	A|0.165;G|0.835	1	0	1	0	0	G	590456	A	G	590456	2	3	8	1	0	0	0	0	0	0	0	1	15725	146	6	4		4	TCF15	20	590456	Silent	SNP	A	TCGA-OR-A5J8-01A-11D-A29I-10		590456	62435064	189	1526										
PANK2	80025	hgsc.bcm.edu	37	chr20	3870124	3870124	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.015	3	1	0.480554686685434	1.00479616306954	0.235165059441808	1	1	0	actgctgctgcggatgggagGgggccggctcggcgcgccca	19	13	0	0	rs3737084	byfrequency	TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	PANK2-115	NM_153638	exon1	c.G377C	p.G126A	TGGGAGGGGGCCG	.	8	8	0	0	G|0.122;C|0.878	2	0	2	0	0	C	3870124	G	C	3870124	3	2	8	1	0	0	0	0	1	0	0	0	11446	1232	43	3	379	3	PANK2	20	3870124	Missense_Mutation	SNP	G	TCGA-OR-A5J8-01A-11D-A29I-10	3279668	3870124	59155396	190	1527										
SMOX	54498	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr20	4168035	4168035	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.015	3	1	0.480554686685434	1.00479616306954	0.235165059441808	1	1	0	cattgagatgtaccgagaccTcttccagcaggggacctgag	12	11	1	3	novel		TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	SMOX-153	NM_001270691	exon8	c.T1739C	p.L580P	GAGACCTCTTCCA	.	172	13	166	1	.	53	42	11	0	0	C	4168035	T	C	4168035	3	2	8	1	0	0	0	0	1	0	0	0	14838	1551	54	4	1765	4	SMOX	20	4168035	Missense_Mutation	SNP	T	TCGA-OR-A5J8-01A-11D-A29I-10	297911	4168035	58857485	191	1528										
LRRN4	164312	hgsc.bcm.edu	37	chr20	6033033	6033033	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.015	3	1	0.480554686685434	1.00479616306954	0.235165059441808	1	1	0	gcgcgggcccggtgcacggcGgcagagcggccagctggttg	20	13	0	1	rs6107751	byfrequency	TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	LRRN4-93	NM_152611	exon2	c.C413T	p.P138L	CACGGCGGCAGAG	.	7	5	0	0	G|0.864;A|0.136	0	0	0	0	0	A	6033033	G	A	6033033	3	1	8	1	0	0	0	0	1	0	0	0	9064	1116	39	1	1825	1	LRRN4	20	6033033	Missense_Mutation	SNP	G	TCGA-OR-A5J8-01A-11D-A29I-10	1864998	6033033	56992487	192	1529										
RBM12	10137	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr20	34241123	34241123	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.015	3	1	0.480554686685434	1.00479616306954	0.235165059441808	1	1	0	ttcctttgatcctacagtcaGgaaggcatgctcttcacctc	7	13	3	1	novel		TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	RBM12-93	NM_001198840	exon2	c.C2122A	p.L708M	CAGTCAGGAAGGC	.	83	7	83	0	.	20	20	0	0	0	T	34241123	G	T	34241123	3	4	8	1	0	0	0	0	1	0	0	0	13148	991	35	3	680	3	RBM12	20	34241123	Missense_Mutation	SNP	G	TCGA-OR-A5J8-01A-11D-A29I-10	28208090	34241123	28784397	193	1530										
CDH22	64405	hgsc.bcm.edu;broad.mit.edu	37	chr20	44803312	44803312	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.015	3	1	0.480554686685434	1.00479616306954	0.235165059441808	1	1	0	cgagtccgcgccctcgaaggCgtaggtctggaaggcgtcgt	16	12	1	0	novel		TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	CDH22-95	NM_021248	exon12	c.G2320A	p.A774T	CGAAGGCGTAGGT	.	108	13	24	0	.	0	0	0	0	0	T	44803312	C	T	44803312	3	4	8	1	0	0	0	0	1	0	0	0	3113	768	27	1	170	1	CDH22	20	44803312	Missense_Mutation	SNP	C	TCGA-OR-A5J8-01A-11D-A29I-10	10562189	44803312	18222208	194	1531										
LAMA5	3911	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr20	60900600	60900600	+	Silent	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.015	3	1	0.480554686685434	1.00479616306954	0.235165059441808	1	1	0	gtctccgtatgccggaagttCccctgtgggtccaggatggc	14	12	1	0	novel		TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	LAMA5-93	NM_005560	exon41	c.G5301T	p.G1767G	GAAGTTCCCCTGT	.	197	42	166	0	.	0	0	0	0	0	A	60900600	C	A	60900600	2	1	8	1	0	0	0	0	0	0	0	1	8631	842	30	3		3	LAMA5	20	60900600	Silent	SNP	C	TCGA-OR-A5J8-01A-11D-A29I-10	16097288	60900600	2124920	195	1532										
LZTR1	8216	broad.mit.edu	37	chr22	21343966	21344002	+	In_Frame_Del	DEL	GAGGAGGTGAGGGGCGTGGGGAGCCAGGGCGCAGGTA	GAGGAGGTGAGGGGCGTGGGGAGCCAGGGCGCAGGTA	-													0.015	3	1	0.480554686685434	1.00479616306954	0.235165059441808	1	1	0	accgagagctcacctgctggGaggaggtgaggggcgtgggg					novel		TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	LZTR1-280	NM_006767	exon7	c.646_651del	p.216_217del	TGCTGGGAGGAGG	.	30	8	26	0	.	0	0	0	0	0	-	21344002	GAGGAGGTGAGGGGCGTGGGGAGCCAGGGCGCAGGTA	-	21343966	7	5	8	1	0	1	0	1	0	0	0	0	9165	1175	41	0	672	0	LZTR1	22	21343966	In_Frame_Del	DEL	GAGGAGGTGAGGGGCGTGGGGAGCCAGGGCGCAGGTA	TCGA-OR-A5J8-01A-11D-A29I-10		21343966	29960600	196	1533										
NEFH	4744	hgsc.bcm.edu;ucsc.edu	37	chr22	29885594	29885594	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.015	3	1	0.480554686685434	1.00479616306954	0.235165059441808	1	1	0	cctgagaaggccaagtccccAgagaaggaagaggccaagtc	13	11	0	3	rs79235463	byfrequency	TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	NEFH-90	NM_021076	exon4	c.A1965T	p.P655P	GTCCCCAGAGAAG	.	198	47	223	0	A|0.500;T|0.500	0	0	0	0	0	T	29885594	A	T	29885594	2	4	8	1	0	0	0	0	0	0	0	1	10343	175	7	5		5	NEFH	22	29885594	Silent	SNP	A	TCGA-OR-A5J8-01A-11D-A29I-10	8541628	29885594	21418972	197	1534										
NEFH	4744	broad.mit.edu	37	chr22	29885622	29885623	+	In_Frame_Ins	INS	-	-	AGGAAG													0.015	3	1	0.480554686685434	1.00479616306954	0.235165059441808	1	1	0	agaggccaagtcccctgagaINSaggccaagtccccagtgaag					novel		TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	NEFH-90	NM_021076	exon4	c.1993_1994insAGGAAG	p.K665delinsKEE	CCTGAGAAGGCCA	.	228	7	277	0	.	0	0	0	0	0	AGGAAG	29885623	-	AGGAAG	29885622	7	5	8	1	0	1	1	0	0	0	0	0	10343	247	9	0	2007	0	NEFH	22	29885622	In_Frame_Ins	INS	-	TCGA-OR-A5J8-01A-11D-A29I-10	28	29885622	21418944	198	1535										
MAP7D2	256714	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	20044071	20044071	+	Splice_Site	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.015	3	1	0.480554686685434	1.00479616306954	0.235165059441808	1	1	0	gataagctttagtagctgtcCtggaaaacaaaaaatatgcc	8	7	0	0	novel		TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	MAP7D2-195	NM_001168467	exon9	c.729-1G>T	.	GCTGTCCTGGAAA	.	87	21	48	0	.	0	0	0	0	0	A	20044071	C	A	20044071	5	1	8	1	0	0	0	0	0	0	1	0	9296	695	24	3	1346	3	MAP7D2	23	20044071	Splice_Site	SNP	C	TCGA-OR-A5J8-01A-11D-A29I-10		20044071	135226489	199	1536										
CXorf22	170063	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	35993875	35993875	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.015	3	1	0.480554686685434	1.00479616306954	0.235165059441808	1	1	0	agtaacacttgagctatcttCtaatgagctagtattgagac	8	7	2	3	novel		TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	CXorf22-131	NM_152632	exon15	c.C2558A	p.S853Y	TATCTTCTAATGA	.	140	18	90	0	.	0	0	0	0	0	A	35993875	C	A	35993875	3	1	8	1	0	0	0	0	1	0	0	0	4108	913	32	3	2616	3	CXorf22	23	35993875	Missense_Mutation	SNP	C	TCGA-OR-A5J8-01A-11D-A29I-10	15949804	35993875	119276685	200	1537										
GUCY2F	2986	ucsc.edu;bcgsc.ca	37	chrX	108696981	108696981	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.015	3	1	0.480554686685434	1.00479616306954	0.235165059441808	1	1	0	aactgcatgtttctggaatgCtgaaccaggctggcagcacc	11	11	1	1	rs2272925	byfrequency	TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	GUCY2F-540	NM_001522	exon4	c.G1140T	p.Q380H	GGAATGCTGAACC	.	42	5	63	0	C|0.934;A|0.066	0	0	0	0	0	A	108696981	C	A	108696981	3	1	8	1	0	0	0	0	1	0	0	0	6919	796	28	3	2250	3	GUCY2F	23	108696981	Missense_Mutation	SNP	C	TCGA-OR-A5J8-01A-11D-A29I-10	72703106	108696981	46573579	201	1538										
SLC25A43	203427	bcgsc.ca	37	chrX	118587003	118587003	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.015	3	1	0.480554686685434	1.00479616306954	0.235165059441808	1	1	0	gttcttcaaaacgagaaaacCgaagcctaaaaaaccaactc	5	11	2	1	rs3810755	byfrequency	TCGA-OR-A5J8-01A-11D-A29I-10	TCGA-OR-A5J8-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2182eee-242e-4d38-8d23-aa9ea31e69e9	bcbf3b2d-2175-4d7e-a175-1a4f35149860	.	SLC25A43-130	NM_145305	exon5	c.C1001T	p.P334L	GAAAACCGAAGCC	.	125	8	94	0	0|0.015;T|0.445	8	8	0	0	0	T	118587003	C	T	118587003	3	4	8	1	0	0	0	0	1	0	0	0	14543	652	23	1	1019	1	SLC25A43	23	118587003	Missense_Mutation	SNP	C	TCGA-OR-A5J8-01A-11D-A29I-10	9890022	118587003	36683557	202	1539										
PLEKHG5	57449	hgsc.bcm.edu;broad.mit.edu	37	chr1	6530886	6530886	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	acttggtgagccgctggtggGgtttggccagcatgtcgctc	16	10	0	1	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	PLEKHG5-652	NM_001265592	exon15	c.C1688A	p.P563H	TGGTGGGGTTTGG	.	78	5	74	0	.	0	0	0	0	0	T	6530886	G	T	6530886	3	4	9	1	0	0	0	0	1	0	0	0	12102	1232	43	3	1601	3	PLEKHG5	1	6530886	Missense_Mutation	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10		6530886	242719735	1	1540										
RERE	473	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	8557547	8557547	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	ctcatgttgggtcactgtatCaccatctggagaaggaaatg	11	8	4	1	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	RERE-515	NM_012102	exon10	c.G922T	p.D308Y	CTGTATCACCATC	.	177	73	258	1	.	3	2	1	0	0	A	8557547	C	A	8557547	3	1	9	1	0	0	0	0	1	0	0	0	13266	826	29	3	3838	3	RERE	1	8557547	Missense_Mutation	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	2026661	8557547	240693074	2	1541										
ANGPTL7	10218	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	11249964	11249964	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	ccgagatgaacaaccaaattGacatcatgcagctgcaggca	9	11	1	3	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	ANGPTL7-90	NM_021146	exon1	c.G328T	p.D110Y	CAAATTGACATCA	.	96	36	114	0	.	0	0	0	0	0	T	11249964	G	T	11249964	3	4	9	1	0	0	0	0	1	0	0	0	619	1290	45	3	330	3	ANGPTL7	1	11249964	Missense_Mutation	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	2692417	11249964	238000657	3	1542										
IFI6	2537	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	27995817	27995817	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	aagaaaagcgataccgccttCtgccgcatggtggcgccgcg	13	13	1	1	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	IFI6-91	NM_002038	exon2	c.G9T	p.Q3H	CGCCTTCTGCCGC	.	96	13	70	0	.	260	204	56	0	0	A	27995817	C	A	27995817	3	1	9	1	0	0	0	0	1	0	0	0	7540	912	32	3	423	3	IFI6	1	27995817	Missense_Mutation	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	16745853	27995817	221254804	4	1543										
OPRD1	4985	hgsc.bcm.edu	37	chr1	29138975	29138975	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	ggacgcctaccctagcgcctGccccagcgctggcgccaatg	12	18	0	0	rs1042114	byfrequency	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	OPRD1-69	NM_000911	exon1	c.G80T	p.C27F	GCGCCTGCCCCAG	.	10	10	0	0	G|0.061;T|0.939	0	0	0	0	0	T	29138975	G	T	29138975	3	4	9	1	0	0	0	0	1	0	0	0	10913	1319	46	3	82	3	OPRD1	1	29138975	Missense_Mutation	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	1143158	29138975	220111646	5	1544										
NCDN	23154	broad.mit.edu;bcgsc.ca	37	chr1	36026523	36026523	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	acaaccgtgccccctgaatgCtaccgggatctgcaggccgg	12	15	1	1	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	NCDN-155	NM_014284	exon3	c.C771A	p.C257X	TGAATGCTACCGG	.	69	5	56	0	.	12	12	0	0	0	A	36026523	C	A	36026523	4	1	9	1	0	0	0	0	0	1	0	0	10243	805	28	3	781	3	NCDN	1	36026523	Nonsense_Mutation	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	6887548	36026523	213224098	6	1545										
FOXJ3	22887	broad.mit.edu;bcgsc.ca	37	chr1	42657323	42657323	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	tgagtgctcactgtactgctGggagagtgctgataggtaca	14	7	1	3	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	FOXJ3-228	NM_001198851	exon11	c.C1002A	p.P334P	ACTGCTGGGAGAG	.	202	8	242	0	.	5	5	0	0	0	T	42657323	G	T	42657323	2	4	9	1	0	0	0	0	0	0	0	1	6032	1335	47	3		3	FOXJ3	1	42657323	Silent	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	6630800	42657323	206593298	7	1546										
CCDC30	728621	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	43055014	43055014	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	aacttctatatcagaacgtaGatgagttacacaggcaagtg	9	7	2	3	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	CCDC30-90	NM_001080850	exon9	c.G1243T	p.D415Y	AACGTAGATGAGT	.	86	42	125	0	.	7	6	1	0	0	T	43055014	G	T	43055014	3	4	9	1	0	0	0	0	1	0	0	0	2811	942	33	3	1273	3	CCDC30	1	43055014	Missense_Mutation	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	397691	43055014	206195607	8	1547										
DMAP1	55929	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	44685801	44685801	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	gccaactgcgagtatgagctGcagatgctgcggcaccgtca	13	12	1	2	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	DMAP1-226	NM_001034024	exon10	c.G1164T	p.L388L	TGAGCTGCAGATG	.	200	13	153	0	.	80	76	4	0	0	T	44685801	G	T	44685801	2	4	9	1	0	0	0	0	0	0	0	1	4587	1306	46	3		3	DMAP1	1	44685801	Silent	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	1630787	44685801	204564820	9	1548										
MAST2	23139	broad.mit.edu	37	chr1	46493447	46493447	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	catcaagctcacggactttgGactgtccaaaattggcctca	8	12	3	0	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	MAST2-581	NM_015112	exon17	c.G1964T	p.G655V	ACTTTGGACTGTC	.	155	4	157	1	.	0	0	0	0	0	T	46493447	G	T	46493447	3	4	9	1	0	0	0	0	1	0	0	0	9353	1174	41	3	2030	3	MAST2	1	46493447	Missense_Mutation	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	1807646	46493447	202757174	10	1549										
NSUN4	387338	bcgsc.ca	37	chr1	46810498	46810498	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	cacagagcccaaattccctgCtgttcgactggctttgcaga	9	13	0	2	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	NSUN4-90	NM_199044	exon2	c.C119A	p.A40D	TCCCTGCTGTTCG	.	125	52	133	3	.	6	6	0	0	0	A	46810498	C	A	46810498	3	1	9	1	0	0	0	0	1	0	0	0	10709	797	28	3	125	3	NSUN4	1	46810498	Missense_Mutation	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	317051	46810498	202440123	11	1550										
ELAVL4	1996	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	50659584	50659584	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	cacgaatcctggttgatcaaGtcacaggttaagtgtttctt	9	8	3	1	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	ELAVL4-516	NM_001144775	exon4	c.G553T	p.V185F	GATCAAGTCACAG	.	170	68	181	0	.	0	0	0	0	0	T	50659584	G	T	50659584	3	4	9	1	0	0	0	0	1	0	0	0	5065	1029	36	3	615	3	ELAVL4	1	50659584	Missense_Mutation	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	3849086	50659584	198591037	12	1551										
ZFYVE9	9372	bcgsc.ca	37	chr1	52704417	52704417	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	aggacagtgtgttggattggCagatgcaggtctagatttaa	14	4	1	2	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	ZFYVE9-230	NM_007324	exon4	c.C1328A	p.A443E	GATTGGCAGATGC	.	122	41	100	3	.	0	0	0	0	0	A	52704417	C	A	52704417	3	1	9	1	0	0	0	0	1	0	0	0	17708	710	25	3	1334	3	ZFYVE9	1	52704417	Missense_Mutation	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	2044833	52704417	196546204	13	1552										
CYP2J2	1573	broad.mit.edu;bcgsc.ca	37	chr1	60377418	60377418	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	gaaactgcattgttgatcttGaaatgagggtcaaaaggctg	12	5	2	3	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	CYP2J2-91	NM_000775	exon4	c.C546A	p.F182L	GATCTTGAAATGA	.	208	9	263	0	.	1	1	0	0	0	T	60377418	G	T	60377418	3	4	9	1	0	0	0	0	1	0	0	0	4178	1281	45	3	986	3	CYP2J2	1	60377418	Missense_Mutation	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	7673001	60377418	188873203	14	1553										
LEPR	3953	hgsc.bcm.edu;broad.mit.edu	37	chr1	66098847	66098847	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	ctaaacagagaacggacattCtttgaagtctaatcatgatc	7	8	3	3	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	LEPR-91	NM_001003679	exon20	c.C2686A	p.L896I	GACATTCTTTGAA	.	26	6	24	0	.	0	0	0	0	0	A	66098847	C	A	66098847	3	1	9	1	0	0	0	0	1	0	0	0	8750	913	32	3	2964	3	LEPR	1	66098847	Missense_Mutation	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	5721429	66098847	183151774	15	1554										
IL23R	149233	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	67724387	67724387	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	tggatataaaccccaaatttCaaattttctgcctgagggaa	7	8	2	1	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	IL23R-90	NM_144701	exon11	c.C1466A	p.S489X	AAATTTCAAATTT	.	118	25	168	1	.	0	0	0	0	0	A	67724387	C	A	67724387	4	1	9	1	0	0	0	0	0	1	0	0	7697	838	29	3	1504	3	IL23R	1	67724387	Nonsense_Mutation	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	1625540	67724387	181526234	16	1555										
NEXN	91624	broad.mit.edu	37	chr1	78401561	78401561	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	agagaatatgaagaactgatCaaattaaaaaggagtggctc	10	4	1	4	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	NEXN-92	NM_144573	exon11	c.C1305A	p.I435I	ACTGATCAAATTA	.	126	9	125	2	.	0	0	0	0	0	A	78401561	C	A	78401561	2	1	9	1	0	0	0	0	0	0	0	1	10384	816	29	3		3	NEXN	1	78401561	Silent	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	10677174	78401561	170849060	17	1556										
LPHN2	23266	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	82409449	82409449	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	tttggtccacctgatcctgcCcaaggtaagcgtgtttactt	9	11	0	1	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	LPHN2-525	NM_012302	exon5	c.C1194A	p.A398A	TCCTGCCCAAGGT	.	124	25	106	1	.	0	0	0	0	0	A	82409449	C	A	82409449	2	1	9	1	0	0	0	0	0	0	0	1	8943	610	22	3		3	LPHN2	1	82409449	Silent	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	4007888	82409449	166841172	18	1557										
WDR63	126820	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	85592293	85592293	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	tctacatcggccgagaagatGgatacattgatatctgggac	11	8	2	3	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	WDR63-95	NM_145172	exon20	c.G2212A	p.G738R	GAAGATGGATACA	.	111	7	89	0	.	4	4	0	0	0	A	85592293	G	A	85592293	3	1	9	1	0	0	0	0	1	0	0	0	17352	1349	47	3	2286	3	WDR63	1	85592293	Missense_Mutation	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	3182844	85592293	163658328	19	1558										
TGFBR3	7049	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	92187701	92187701	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	aaagccaatactgttaggagCctgaagatatagcaaaaaaa	8	6	0	2	rs140100898	byfrequency	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	TGFBR3-93	NM_001195683	exon8	c.G886T	p.A296S	TAGGAGCCTGAAG	.	57	8	40	0	C|0.999;A|0.001	0	0	0	0	0	A	92187701	C	A	92187701	3	1	9	1	0	0	0	0	1	0	0	0	15860	753	26	3	1709	3	TGFBR3	1	92187701	Missense_Mutation	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	6595408	92187701	157062920	20	1559										
SLC44A3	126969	broad.mit.edu;bcgsc.ca	37	chr1	95310885	95310885	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	gaaagagaataaaattgacaGttgagcttttccaaatcaca	7	6	1	3	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	SLC44A3-91	NM_001114106	exon9	c.G937T	p.V313F	TTGACAGTTGAGC	.	55	29	61	2	.	4	1	3	0	0	T	95310885	G	T	95310885	3	4	9	1	0	0	0	0	1	0	0	0	14672	1029	36	3	971	3	SLC44A3	1	95310885	Missense_Mutation	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	3123184	95310885	153939736	21	1560										
AHCYL1	10768	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	110561730	110561730	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	cctttgttctgtccatcacaGccacaacacaggtatgtggc	8	13	2	0	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	AHCYL1-91	NM_006621	exon14	c.G1375T	p.A459S	ATCACAGCCACAA	.	57	18	57	0	.	0	0	0	0	0	T	110561730	G	T	110561730	3	4	9	1	0	0	0	0	1	0	0	0	410	971	34	3	1429	3	AHCYL1	1	110561730	Missense_Mutation	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	15250845	110561730	138688891	22	1561										
CHIA	27159	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	111862838	111862838	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	actgctgtatgtttcaggttGcacggctccagctcagccca	10	13	2	0	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	CHIA-91	NM_201653	exon12	c.G1181T	p.C394F	CAGGTTGCACGGC	.	80	9	103	0	.	0	0	0	0	0	T	111862838	G	T	111862838	3	4	9	1	0	0	0	0	1	0	0	0	3348	1319	46	3	1223	3	CHIA	1	111862838	Missense_Mutation	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	1301108	111862838	137387783	23	1562										
KCND3	3752	broad.mit.edu	37	chr1	112525124	112525126	+	In_Frame_Del	DEL	GAA	GAA	-													0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	tactccttggtgtcctcgttGaagaagaactccttctccgt					novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	KCND3-155	NM_004980	exon2	c.223_225del	p.75_75del	CTCGTTGAAGAAG	.	199	7	196	0	.	0	0	0	0	0	-	112525126	GAA	-	112525124	7	5	9	1	0	1	0	1	0	0	0	0	8041	1281	45	0	1770	0	KCND3	1	112525124	In_Frame_Del	DEL	GAA	TCGA-OR-A5JA-01A-11D-A29I-10	662286	112525124	136725497	24	1563										
MAGI3	260425	broad.mit.edu;ucsc.edu	37	chr1	114225611	114225611	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	cacattttgcttccatatttGaagagtctcacgtgccagta	7	10	1	2	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	MAGI3-524	NM_001142782	exon21	c.G3421T	p.E1141X	ATATTTGAAGAGT	.	109	19	120	2	.	5	5	0	0	0	T	114225611	G	T	114225611	4	4	9	1	0	0	0	0	0	1	0	0	9220	1291	45	3	3557	3	MAGI3	1	114225611	Nonsense_Mutation	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	1700487	114225611	135025010	25	1564										
SPAG17	200162	broad.mit.edu;bcgsc.ca	37	chr1	118539252	118539252	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	ttcaccatagatttgctgatGattcttttcaaggtgcatag	8	7	3	3	rs150351466	byfrequency;alternate_allele	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	SPAG17-158	NM_206996	exon33	c.C4891A	p.H1631N	GCTGATGATTCTT	.	85	6	113	1	G|1.000;A|0.000	0	0	0	0	0	T	118539252	G	T	118539252	3	4	9	1	0	0	0	0	1	0	0	0	15016	1290	45	3	1844	3	SPAG17	1	118539252	Missense_Mutation	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	4313641	118539252	130711369	26	1565										
TBX15	6913	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	119427957	119427957	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	ggcagccatgttgcttcgggCacatggtggataatcagaga	14	8	1	1	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	TBX15-136	NM_152380	exon8	c.G889T	p.A297S	TTCGGGCACATGG	.	42	13	54	0	.	1	1	0	0	0	A	119427957	C	A	119427957	3	1	9	1	0	0	0	0	1	0	0	0	15689	710	25	3	605	3	TBX15	1	119427957	Missense_Mutation	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	888705	119427957	129822664	27	1566										
MRPL9	65005	bcgsc.ca	37	chr1	151735532	151735532	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	atgcttcgtgtcctccaccaGcttatagacgcgatgtcgcc	9	14	0	1	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	MRPL9-91	NM_031420	exon2	c.C244A	p.L82M	CCACCAGCTTATA	.	192	73	156	2	.	25	20	5	0	0	T	151735532	G	T	151735532	3	4	9	1	0	0	0	0	1	0	0	0	9848	962	34	3	583	3	MRPL9	1	151735532	Missense_Mutation	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	32307575	151735532	97515089	28	1567										
RORC	6097	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	151787731	151787731	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	cgaggagcccaggggcagctGcccgtctgggagccccaagg	17	14	1	0	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	RORC-227	NM_005060	exon5	c.C469A	p.Q157K	GCAGCTGCCCGTC	.	49	9	66	0	.	2	1	1	0	0	T	151787731	G	T	151787731	3	4	9	1	0	0	0	0	1	0	0	0	13565	1328	46	3	1115	3	RORC	1	151787731	Missense_Mutation	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	52199	151787731	97462890	29	1568										
SPRR2A	6700	broad.mit.edu	37	chr1	153029123	153029123	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	ggcagggctcagggcacttcGggggtggacatggctctggg	20	9	2	0	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	SPRR2A-69	NM_005988	exon2	c.C89A	p.P30Q	CACTTCGGGGGTG	.	54	5	54	0	.	61	61	0	0	0	T	153029123	G	T	153029123	3	4	9	1	0	0	0	0	1	0	0	0	15134	1116	39	2	133	2	SPRR2A	1	153029123	Missense_Mutation	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	1241392	153029123	96221498	30	1569										
IL6R	3570	broad.mit.edu;bcgsc.ca	37	chr1	154427044	154427044	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	tcggaacgctcctctgcattGccattgttctgaggtgagat	11	10	2	2	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	IL6R-229	NM_000565	exon9	c.G1147T	p.A383S	TGCATTGCCATTG	.	68	7	84	0	.	0	0	0	0	0	T	154427044	G	T	154427044	3	4	9	1	0	0	0	0	1	0	0	0	7723	1319	46	3	1181	3	IL6R	1	154427044	Missense_Mutation	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	1397921	154427044	94823577	31	1570										
KCNN3	3782	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	154841756	154841756	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	atggagcagggtctggtgggCatggttgtcctcccgggagg	19	8	1	0	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	KCNN3-91	NM_001204087	exon1	c.G685T	p.A229S	GGTGGGCATGGTT	.	87	14	120	0	.	0	0	0	0	0	A	154841756	C	A	154841756	3	1	9	1	0	0	0	0	1	0	0	0	8101	710	25	3	1564	3	KCNN3	1	154841756	Missense_Mutation	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	414712	154841756	94408865	32	1571										
YY1AP1	55249	broad.mit.edu;bcgsc.ca	37	chr1	155630075	155630075	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	tggataacaggggcaggtttGatacagcgaaaggccctggc	15	8	0	1	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	YY1AP1-93	NM_001198903	exon10	c.C2040A	p.I680I	AGGTTTGATACAG	.	257	25	270	1	.	32	27	5	0	0	T	155630075	G	T	155630075	2	4	9	1	0	0	0	0	0	0	0	1	17546	1280	45	3		3	YY1AP1	1	155630075	Silent	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	788319	155630075	93620546	33	1572										
NTRK1	4914	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	156841476	156841476	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	tgtcaccagtgacctcaacaGgaagaacgtgacgtgctggg	13	10	2	3	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	NTRK1-1393	NM_001012331	exon7	c.G779T	p.R260M	TCAACAGGAAGAA	.	161	21	138	0	.	0	0	0	0	0	T	156841476	G	T	156841476	3	4	9	1	0	0	0	0	1	0	0	0	10735	1000	35	3	935	3	NTRK1	1	156841476	Missense_Mutation	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	1211401	156841476	92409145	34	1573										
FCRL3	115352	broad.mit.edu;bcgsc.ca	37	chr1	157665960	157665960	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	gccaacagggaacgctgggtCtttctacccaggcttcttac	10	13	3	0	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	FCRL3-156	NM_052939	exon7	c.G1002T	p.K334N	CTGGGTCTTTCTA	.	112	6	138	2	.	0	0	0	0	0	A	157665960	C	A	157665960	3	1	9	1	0	0	0	0	1	0	0	0	5815	912	32	3	1238	3	FCRL3	1	157665960	Missense_Mutation	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	824484	157665960	91584661	35	1574										
LY9	4063	bcgsc.ca	37	chr1	160784476	160784476	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	agctgaagatagaggacgccGgcccctaccatgcctacgtg	12	13	0	3	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	LY9-91	NM_001261457	exon4	c.G997A	p.G333S	GACGCCGGCCCCT	.	161	143	164	4	.	0	0	0	0	0	A	160784476	G	A	160784476	3	1	9	1	0	0	0	0	1	0	0	0	9129	1116	39	1	1143	1	LY9	1	160784476	Missense_Mutation	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	3118516	160784476	88466145	36	1575										
FMO1	2326	ucsc.edu	37	chr1	171227313	171227313	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	gaagaaggactggagcccacCtgctttgagaggagcgatga	15	8	0	3	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	FMO1-515	NM_002021	exon2	c.C87A	p.T29T	GCCCACCTGCTTT	.	47	10	57	3	.	0	0	0	0	0	A	171227313	C	A	171227313	2	1	9	1	0	0	0	0	0	0	0	1	5973	668	24	3		3	FMO1	1	171227313	Silent	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	10442837	171227313	78023308	37	1576										
TOR3A	64222	hgsc.bcm.edu	37	chr1	179051300	179051300	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	ggcgccagctttggctctttTtcctgctgctgctcccgggc	12	15	1	0	rs2296377	byfrequency	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	TOR3A-90	NM_022371	exon1	c.T37C	p.F13L	CTCTTTTTCCTGC	.	9	9	0	0	T|0.229;C|0.771	2	0	2	0	0	C	179051300	T	C	179051300	3	2	9	1	0	0	0	0	1	0	0	0	16414	1841	64	4	39	4	TOR3A	1	179051300	Missense_Mutation	SNP	T	TCGA-OR-A5JA-01A-11D-A29I-10	7823987	179051300	70199321	38	1577										
HMCN1	83872	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	186050464	186050464	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	caaggaattcctggcagaaaGatggacagcccttgctagaa	11	9	0	3	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	HMCN1-113	NM_031935	exon56	c.G8725T	p.D2909Y	CAGAAAGATGGAC	.	77	24	72	1	.	0	0	0	0	0	T	186050464	G	T	186050464	3	4	9	1	0	0	0	0	1	0	0	0	7241	942	33	3	8947	3	HMCN1	1	186050464	Missense_Mutation	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	6999164	186050464	63200157	39	1578										
TPR	7175	hgsc.bcm.edu;bcgsc.ca	37	chr1	186301382	186301382	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	ttggaagaggcatttccactGtatcatcagagacttggtct	10	8	3	2	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	TPR-228	NM_003292	exon38	c.C5549A	p.T1850K	TCCACTGTATCAT	.	78	4	107	0	.	12	12	0	0	0	T	186301382	G	T	186301382	3	4	9	1	0	0	0	0	1	0	0	0	16454	1377	48	3	1598	3	TPR	1	186301382	Missense_Mutation	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	250918	186301382	62949239	40	1579										
PLA2G4A	5321	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	186909138	186909138	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	aatactactctgagcagtttGaaggaaaaagttaatactgc	8	6	1	2	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	PLA2G4A-721	NM_024420	exon10	c.G945T	p.L315F	CAGTTTGAAGGAA	.	70	7	53	0	.	2	2	0	0	0	T	186909138	G	T	186909138	3	4	9	1	0	0	0	0	1	0	0	0	12030	1281	45	3	979	3	PLA2G4A	1	186909138	Missense_Mutation	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	607756	186909138	62341483	41	1580										
CFHR4	10877	ucsc.edu;bcgsc.ca	37	chr1	196883674	196883674	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	tccagagccaagagtaatggCatgcggtttaagctccatga	11	9	0	3	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	CFHR4-93	NM_001201550	exon8	c.C1230A	p.G410G	TAATGGCATGCGG	.	344	45	492	6	.	0	0	0	0	0	A	196883674	C	A	196883674	2	1	9	1	0	0	0	0	0	0	0	1	3293	697	25	3		3	CFHR4	1	196883674	Silent	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	9974536	196883674	52366947	42	1581										
CACNA1S	779	broad.mit.edu;bcgsc.ca	37	chr1	201058470	201058470	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	ccgaagttgtcgaagtgggtGatgccatggttgggccctgg	17	8	0	1	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	CACNA1S-94	NM_000069	exon6	c.C816A	p.I272I	GTGGGTGATGCCA	.	241	10	180	2	.	0	0	0	0	0	T	201058470	G	T	201058470	2	4	9	1	0	0	0	0	0	0	0	1	2553	1280	45	3		3	CACNA1S	1	201058470	Silent	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	4174796	201058470	48192151	43	1582										
IGFN1	91156	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	201193916	201193916	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	gcttctgatccctgtggctgGactctcagacagtggtctct	11	12	3	2	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	IGFN1-71	NM_001164586	exon21	c.G10400T	p.G3467V	TGGCTGGACTCTC	.	200	76	154	1	.	0	0	0	0	0	T	201193916	G	T	201193916	3	4	9	1	0	0	0	0	1	0	0	0	7611	1174	41	3	10478	3	IGFN1	1	201193916	Missense_Mutation	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	135446	201193916	48056705	44	1583										
TMEM183A	92703	bcgsc.ca	37	chr1	202985162	202985162	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	gaagctgcgctgtctccgggCttgtgtgatccgatctctgt	13	11	2	1	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	TMEM183A-90	NM_138391	exon5	c.C602A	p.A201D	TCCGGGCTTGTGT	.	87	42	108	3	.	31	19	12	0	0	A	202985162	C	A	202985162	3	1	9	1	0	0	0	0	1	0	0	0	16139	797	28	3	620	3	TMEM183A	1	202985162	Missense_Mutation	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	1791246	202985162	46265459	45	1584										
LRRN2	10446	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	204588338	204588338	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	aggtctaggaacttgagcccGggcacctgttccagtgcccg	13	13	1	1	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	LRRN2-514	NM_006338	exon3	c.C783T	p.P261P	GAGCCCGGGCACC	.	50	7	46	0	.	0	0	0	0	0	A	204588338	G	A	204588338	2	1	9	1	0	0	0	0	0	0	0	1	9062	1103	39	1		1	LRRN2	1	204588338	Silent	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	1603176	204588338	44662283	46	1585										
DSTYK	25778	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	205156626	205156626	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	attgttctcttggacctccaGatcctcctcagggatggtct	9	12	3	1	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	DSTYK-333	NM_199462	exon2	c.C574A	p.L192M	CCTCCAGATCCTC	.	128	53	148	1	.	1	1	0	0	0	T	205156626	G	T	205156626	3	4	9	1	0	0	0	0	1	0	0	0	4796	933	33	3	2263	3	DSTYK	1	205156626	Missense_Mutation	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	568288	205156626	44093995	47	1586										
ACBD3	64746	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	226347014	226347014	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	tgttgggctgcatactgctgGaactgcacggcagtctggga	15	9	1	0	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	ACBD3-226	NM_022735	exon5	c.C774A	p.F258L	CTGCTGGAACTGC	.	153	23	182	1	.	9	6	3	0	0	T	226347014	G	T	226347014	3	4	9	1	0	0	0	0	1	0	0	0	123	1165	41	3	828	3	ACBD3	1	226347014	Missense_Mutation	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	21190388	226347014	22903607	48	1587										
DISC1	27185	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	232144789	232144789	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	cactgtgctggaggtgaacaGaaagaggtctgtccttttca	12	8	2	3	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	DISC1-91	NM_001164537	exon12	c.G2397T	p.Q799H	TGAACAGAAAGAG	.	43	19	55	0	.	0	0	0	0	0	T	232144789	G	T	232144789	3	4	9	1	0	0	0	0	1	0	0	0	4549	933	33	3	3079	3	DISC1	1	232144789	Missense_Mutation	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	5797775	232144789	17105832	49	1588										
FH	2271	ucsc.edu	37	chr1	241667408	241667408	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	tcccagacctgaccgaggacCagaacccaaaaatcgaatat	7	13	0	3	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	FH-416	NM_000143	exon7	c.G1042T	p.G348C	GAGGACCAGAACC	.	79	14	144	2	.	116	95	21	0	0	A	241667408	C	A	241667408	3	1	9	1	0	0	0	0	1	0	0	0	5894	594	21	3	506	3	FH	1	241667408	Missense_Mutation	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	9522619	241667408	7583213	50	1589										
EXO1	9156	broad.mit.edu	37	chr1	242042620	242042620	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	tgcatcaaagctttctcagtGctctagtaaggactctgatt	8	9	4	1	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	EXO1-661	NM_130398	exon13	c.G2084T	p.C695F	CTCAGTGCTCTAG	.	28	6	28	0	.	4	2	2	0	0	T	242042620	G	T	242042620	3	4	9	1	0	0	0	0	1	0	0	0	5313	1319	46	3	2122	3	EXO1	1	242042620	Missense_Mutation	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	375212	242042620	7208001	51	1590										
C2orf50	130813	bcgsc.ca	37	chr2	11284210	11284210	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	gaaggggcccggaagaagaaGctggaggaccagatgcagcc	17	9	0	3	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	C2orf50-90	NM_182500	exon3	c.G462T	p.K154N	GAAGAAGCTGGAG	.	172	33	218	4	.	0	0	0	0	0	T	11284210	G	T	11284210	3	4	9	1	0	0	0	0	1	0	0	0	2178	962	34	3	472	3	C2orf50	2	11284210	Missense_Mutation	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10		11284210	231915163	52	1591										
AGBL5	60509	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	27290394	27290394	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	aggacaggagacggcagcagCagcccctgaaccatcgtcct	12	14	0	2	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	AGBL5-154	NM_021831	exon12	c.C2122A	p.Q708K	CAGCAGCAGCCCC	.	102	32	118	1	.	5	2	3	0	0	A	27290394	C	A	27290394	3	1	9	1	0	0	0	0	1	0	0	0	378	711	25	3	2229	3	AGBL5	2	27290394	Missense_Mutation	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	16006184	27290394	215908979	53	1592										
CRIM1	51232	hgsc.bcm.edu;broad.mit.edu	37	chr2	36583544	36583544	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	ccggcacccgggcgctggtcTgcctgccctgtgacgagtcc	14	17	1	1	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	CRIM1-118	NM_016441	exon1	c.T109G	p.C37G	CTGGTCTGCCTGC	.	53	8	14	0	.	1	1	0	0	0	G	36583544	T	G	36583544	3	3	9	1	0	0	0	0	1	0	0	0	3879	1580	55	5	111	5	CRIM1	2	36583544	Missense_Mutation	SNP	T	TCGA-OR-A5JA-01A-11D-A29I-10	9293150	36583544	206615829	54	1593										
HEATR5B	54497	broad.mit.edu	37	chr2	37215999	37215999	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	aagctggtaacatttggcttGaacctatataagaagaacat	8	6	0	3	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	HEATR5B-142	NM_019024	exon35	c.C5701A	p.Q1901K	TGGCTTGAACCTA	.	33	6	53	2	.	0	0	0	0	0	T	37215999	G	T	37215999	3	4	9	1	0	0	0	0	1	0	0	0	7053	1299	45	3	522	3	HEATR5B	2	37215999	Missense_Mutation	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	632455	37215999	205983374	55	1594										
SLC8A1	6546	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	40657111	40657111	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	ttcttgagatgtgatgacttCtatagaggacatgaaccgat	10	6	2	5	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	SLC8A1-93	NM_001252624	exon1	c.G310T	p.E104X	TGACTTCTATAGA	.	60	32	60	0	.	0	0	0	0	0	A	40657111	C	A	40657111	4	1	9	1	0	0	0	0	0	1	0	0	14741	922	32	3	2759	3	SLC8A1	2	40657111	Nonsense_Mutation	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	3441112	40657111	202542262	56	1595										
ASPRV1	151516	ucsc.edu;bcgsc.ca	37	chr2	70188113	70188113	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	accacattctcaaagggctgCagggtgtccagatcgccatc	10	13	1	1	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	ASPRV1-69	NM_152792	exon1	c.G708T	p.L236L	GGGCTGCAGGGTG	.	123	21	158	2	.	4	4	0	0	0	A	70188113	C	A	70188113	2	1	9	1	0	0	0	0	0	0	0	1	1059	697	25	3		3	ASPRV1	2	70188113	Silent	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	29531002	70188113	173011260	57	1596										
ANKRD53	79998	hgsc.bcm.edu	37	chr2	71206267	71206267	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	cagaccacctcagtgcgcagGcgactgccctcgccaggccg	12	18	1	1	rs57527165	byfrequency	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	ANKRD53-90	NM_001115116	exon2	c.G211A	p.A71T	GCGCAGGCGACTG	.	8	7	0	0	G|0.893;A|0.107	0	0	0	0	0	A	71206267	G	A	71206267	3	1	9	1	0	0	0	0	1	0	0	0	679	1203	42	3	217	3	ANKRD53	2	71206267	Missense_Mutation	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	1018154	71206267	171993106	58	1597										
SNRNP200	23020	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	96948949	96948949	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	cctgacttacctgagctgaaGagctgctccaccaggcgtcg	11	14	0	4	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	SNRNP200-162	NM_014014	exon34	c.C4905A	p.L1635L	GCTGAAGAGCTGC	.	68	22	74	0	.	0	0	0	0	0	T	96948949	G	T	96948949	2	4	9	1	0	0	0	0	0	0	0	1	14887	929	33	3		3	SNRNP200	2	96948949	Silent	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	25742682	96948949	146250424	59	1598										
IL1RL1	9173	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	102964457	102964457	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	gtatgtagtgtatttttaatGctaatcaatgtcctggttat	8	4	1	0	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	IL1RL1-517	NM_016232	exon9	c.G1023T	p.M341I	TTTAATGCTAATC	.	73	12	81	0	.	0	0	0	0	0	T	102964457	G	T	102964457	3	4	9	1	0	0	0	0	1	0	0	0	7684	1319	46	3	1070	3	IL1RL1	2	102964457	Missense_Mutation	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	6015508	102964457	140234916	60	1599										
MRPS9	64965	broad.mit.edu	37	chr2	105654631	105654631	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	aggggtagcctcgcccggaaGcaaggcctctggaaaaccgc	14	13	1	0	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	MRPS9-90	NM_182640	exon1	c.G81T	p.K27N	CCGGAAGCAAGGC	.	113	23	108	2	.	9	6	3	0	0	T	105654631	G	T	105654631	3	4	9	1	0	0	0	0	1	0	0	0	9877	962	34	3	83	3	MRPS9	2	105654631	Missense_Mutation	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	2690174	105654631	137544742	61	1600										
TGFBRAP1	9392	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	105886085	105886085	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	cagctcgtgcaccaggatatGcagcgccttctcatgctcgc	10	15	1	0	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	TGFBRAP1-91	NM_004257	exon11	c.C2050A	p.H684N	GGATATGCAGCGC	.	58	30	56	0	.	7	2	5	0	0	T	105886085	G	T	105886085	3	4	9	1	0	0	0	0	1	0	0	0	15861	1319	46	3	540	3	TGFBRAP1	2	105886085	Missense_Mutation	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	231454	105886085	137313288	62	1601										
SLC5A7	60482	ucsc.edu;bcgsc.ca	37	chr2	108609540	108609540	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	ctcctgtttattcctgcactGatgggagaaatgttctgggc	11	9	1	2	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	SLC5A7-93	NM_021815	exon4	c.G405T	p.L135L	TGCACTGATGGGA	.	141	65	181	3	.	0	0	0	0	0	T	108609540	G	T	108609540	2	4	9	1	0	0	0	0	0	0	0	1	14705	1277	45	3		3	SLC5A7	2	108609540	Silent	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	2723455	108609540	134589833	63	1602										
GCC2	9648	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	109087646	109087646	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	ataagaaatgtgaaagggaaGaaagattgattcttgaactt	10	2	1	6	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	GCC2-91	NM_181453	exon6	c.G1861T	p.E621X	AGGGAAGAAAGAT	.	150	18	188	1	.	2	2	0	0	0	T	109087646	G	T	109087646	4	4	9	1	0	0	0	0	0	1	0	0	6306	943	33	3	1883	3	GCC2	2	109087646	Nonsense_Mutation	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	478106	109087646	134111727	64	1603										
MERTK	10461	ucsc.edu;bcgsc.ca	37	chr2	112740485	112740485	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	tagtgataatgtggacatcaGatggatgaagcctccgacta	11	7	1	3	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	MERTK-1463	NM_006343	exon8	c.G1211T	p.R404I	ACATCAGATGGAT	.	140	69	191	2	.	17	4	13	0	0	T	112740485	G	T	112740485	3	4	9	1	0	0	0	0	1	0	0	0	9507	942	33	3	1241	3	MERTK	2	112740485	Missense_Mutation	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	3652839	112740485	130458888	65	1604										
WDR33	55339	broad.mit.edu	37	chr2	128477187	128477187	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	ctcatctcttgaggcgggtgGcccataatcatcccttgggg	12	12	3	1	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	WDR33-90	NM_018383	exon16	c.C2412A	p.G804G	CGGGTGGCCCATA	.	24	3	26	0	.	6	5	1	0	0	T	128477187	G	T	128477187	2	4	9	1	0	0	0	0	0	0	0	1	17325	1190	42	3		3	WDR33	2	128477187	Silent	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	15736702	128477187	114722186	66	1605										
AMMECR1L	83607	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	128631584	128631584	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	gcgggattcattcgtgtgatGggagagtttccaggtcccag	15	8	1	2	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	AMMECR1L-90	NM_031445	exon3	c.C225A	p.P75P	TGTGATGGGAGAG	.	122	24	144	0	.	4	2	2	0	0	T	128631584	G	T	128631584	2	4	9	1	0	0	0	0	0	0	0	1	579	1335	47	3		3	AMMECR1L	2	128631584	Silent	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	154397	128631584	114567789	67	1606										
CCDC74B	91409	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	130898834	130898834	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	gacgtcagcttttgaatcttGcttgttgaaggagccgggct	13	8	2	2	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	CCDC74B-90	NM_207310	exon4	c.C580A	p.Q194K	AATCTTGCTTGTT	.	83	32	103	0	.	99	99	0	0	0	T	130898834	G	T	130898834	3	4	9	1	0	0	0	0	1	0	0	0	2854	1328	46	3	582	3	CCDC74B	2	130898834	Missense_Mutation	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	2267250	130898834	112300539	68	1607										
NEB	4703	bcgsc.ca	37	chr2	152515607	152515607	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	tattaattgcatttgcctttGccaaaataatctgggggata	8	6	1	0	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	NEB-145	NM_004543	exon47	c.C6047A	p.A2016E	GCCTTTGCCAAAA	.	74	5	111	0	.	0	0	0	0	0	T	152515607	G	T	152515607	3	4	9	1	0	0	0	0	1	0	0	0	10331	1319	46	3	20183	3	NEB	2	152515607	Missense_Mutation	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	21616773	152515607	90683766	69	1608										
SCN2A	6326	broad.mit.edu;bcgsc.ca	37	chr2	166166936	166166936	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	gtgtttgcgctaataggattGcagttgttcatgggcaacct	12	7	1	0	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	SCN2A-142	NM_001040143	exon6	c.G801T	p.L267F	AGGATTGCAGTTG	.	88	6	133	1	.	0	0	0	0	0	T	166166936	G	T	166166936	3	4	9	1	0	0	0	0	1	0	0	0	13951	1310	46	3	919	3	SCN2A	2	166166936	Missense_Mutation	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	13651329	166166936	77032437	70	1609										
SCN9A	6335	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	167129186	167129186	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	tattcagatcttctgcttgtCttatctccctggaaatcttt	5	10	6	1	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	SCN9A-181	NM_002977	exon17	c.G3041T	p.R1014I	GCTTGTCTTATCT	.	37	6	38	0	.	0	0	0	0	0	A	167129186	C	A	167129186	3	1	9	1	0	0	0	0	1	0	0	0	13960	913	32	3	2936	3	SCN9A	2	167129186	Missense_Mutation	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	962250	167129186	76070187	71	1610										
DHRS9	10170	bcgsc.ca	37	chr2	169939886	169939886	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	gtgttcccggcgtgctggctCccactgactggctgacacta	12	14	0	2	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	DHRS9-90	NM_005771	exon6	c.C361A	p.P121T	CTGGCTCCCACTG	.	118	53	164	5	.	0	0	0	0	0	A	169939886	C	A	169939886	3	1	9	1	0	0	0	0	1	0	0	0	4509	855	30	3	367	3	DHRS9	2	169939886	Missense_Mutation	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	2810700	169939886	73259487	72	1611										
DCAF17	80067	ucsc.edu;bcgsc.ca	37	chr2	172330394	172330394	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	aggcaaaaaatgggatccaaGaaatggattgttgttctcta	10	5	1	1	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	DCAF17-90	NM_025000	exon10	c.G1000T	p.E334X	ATCCAAGAAATGG	.	97	39	135	5	.	0	0	0	0	0	T	172330394	G	T	172330394	4	4	9	1	0	0	0	0	0	1	0	0	4275	943	33	3	1038	3	DCAF17	2	172330394	Nonsense_Mutation	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	2390508	172330394	70868979	73	1612										
ITGA6	3655	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	173338941	173338941	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	acatattcgatggagaaggtCtggcctcttcatttggctat	10	8	3	1	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	ITGA6-227	NM_000210	exon6	c.C934A	p.L312M	GAAGGTCTGGCCT	.	117	62	152	0	.	1	1	0	0	0	A	173338941	C	A	173338941	3	1	9	1	0	0	0	0	1	0	0	0	7901	912	32	3	956	3	ITGA6	2	173338941	Missense_Mutation	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	1008547	173338941	69860432	74	1613										
WIPF1	7456	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr2	175427307	175427307	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	gggagggagtggtggagcacCcctttctcttcggttggatc	16	9	1	0	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	WIPF1-92	NM_003387	exon8	c.G1480T	p.G494C	GAGCACCCCTTTC	.	147	84	173	0	.	1	1	0	0	0	A	175427307	C	A	175427307	3	1	9	1	0	0	0	0	1	0	0	0	17405	623	22	3	35	3	WIPF1	2	175427307	Missense_Mutation	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	2088366	175427307	67772066	75	1614										
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	179477034	179477034	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	tttggccagcacagagtcctCaatttcggtgtagtcgcttt	10	10	1	1	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	TTN-636	NM_001267550	exon266	c.G50218T	p.E16740X	AGTCCTCAATTTC	.	89	20	133	0	.	0	0	0	0	0	A	179477034	C	A	179477034	4	1	9	1	0	0	0	0	0	1	0	0	16773	835	29	3	57863	3	TTN	2	179477034	Nonsense_Mutation	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	4049727	179477034	63722339	76	1615										
TTN	7273	bcgsc.ca	37	chr2	179482553	179482553	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	gtgtggctgcacttggttttCcaactccaattcgattttgg	10	9	0	0	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	TTN-636	NM_001267550	exon253	c.G47525T	p.G15842V	GGTTTTCCAACTC	.	286	59	421	5	.	0	0	0	0	0	A	179482553	C	A	179482553	3	1	9	1	0	0	0	0	1	0	0	0	16773	855	30	3	60608	3	TTN	2	179482553	Missense_Mutation	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	5519	179482553	63716820	77	1616										
ITGA4	3676	broad.mit.edu;bcgsc.ca	37	chr2	182360586	182360586	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	gaacgaaatttgactgtgttGaaaatggatggccttctgtg	12	5	1	2	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	ITGA4-230	NM_000885	exon14	c.G1462T	p.E488X	TGTGTTGAAAATG	.	212	9	273	0	.	0	0	0	0	0	T	182360586	G	T	182360586	4	4	9	1	0	0	0	0	0	1	0	0	7899	1291	45	3	1516	3	ITGA4	2	182360586	Nonsense_Mutation	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	2878033	182360586	60838787	78	1617										
ITGA4	3676	broad.mit.edu;bcgsc.ca	37	chr2	182399023	182399023	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	agacttcagcactcaagtttGaaataagagcaacaggtttt	8	7	2	3	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	ITGA4-230	NM_000885	exon26	c.G2809T	p.E937X	AAGTTTGAAATAA	.	258	19	331	1	.	1	1	0	0	0	T	182399023	G	T	182399023	4	4	9	1	0	0	0	0	0	1	0	0	7899	1291	45	3	2911	3	ITGA4	2	182399023	Nonsense_Mutation	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	38437	182399023	60800350	79	1618										
ZNF804A	91752	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	185803043	185803043	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	aatcctatctttgccattatGaactggctgaggcccttcca	7	12	1	2	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	ZNF804A-163	NM_194250	exon4	c.G2920T	p.E974X	CATTATGAACTGG	.	103	24	112	1	.	0	0	0	0	0	T	185803043	G	T	185803043	4	4	9	1	0	0	0	0	0	1	0	0	18207	1291	45	3	2934	3	ZNF804A	2	185803043	Nonsense_Mutation	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	3404020	185803043	57396330	80	1619										
CALCRL	10203	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	188250272	188250272	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	atatatatttttatgcttacCataaaaaaaggcaagagaac	5	5	0	1	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	CALCRL-523	NM_001271751	exon3	c.G51T	p.M17I	GCTTACCATAAAA	.	95	45	137	2	.	0	0	0	0	0	A	188250272	C	A	188250272	3	1	9	1	0	0	0	0	1	0	0	0	2586	608	21	3	1382	3	CALCRL	2	188250272	Missense_Mutation	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	2447229	188250272	54949101	81	1620										
COL5A2	1290	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	189917495	189917495	+	Silent	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	aggcggaccttgggttcctcGaccaccttttagtccaggaa	11	12	0	0	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	COL5A2-92	NM_000393	exon40	c.C2695A	p.R899R	TTCCTCGACCACC	.	163	80	202	1	.	3	3	0	0	0	T	189917495	G	T	189917495	2	4	9	1	0	0	0	0	0	0	0	1	3703	1066	37	2		2	COL5A2	2	189917495	Silent	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	1667223	189917495	53281878	82	1621										
CCDC150	284992	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	197541324	197541324	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	agtgtatccagaaagcacagGatgctgaaaagagaacagct	11	7	0	3	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	.	NM_001080539	exon12	c.G1309T	p.D437Y	GCACAGGATGCTG	.	172	74	211	0	.	0	0	0	0	0	T	197541324	G	T	197541324	3	4	9	1	0	0	0	0	1	0	0	0	2791	1174	41	3	1355	3	CCDC150	2	197541324	Missense_Mutation	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	7623829	197541324	45658049	83	1622										
SGOL2	151246	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	201397779	201397779	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	aaagacaaaagaatttcaaaGactactaagttgaatgtttc	6	5	1	4	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	SGOL2-94	NM_001160046	exon2	c.G81T	p.K27N	TTCAAAGACTACT	.	120	49	191	1	.	0	0	0	0	0	T	201397779	G	T	201397779	3	4	9	1	0	0	0	0	1	0	0	0	14252	933	33	3	83	3	SGOL2	2	201397779	Missense_Mutation	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	3856455	201397779	41801594	84	1623										
CFLAR	8837	ucsc.edu;bcgsc.ca	37	chr2	201994606	201994606	+	Silent	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	aggatgtctgctgaagtcatCcatcaggttgaagaagcact	11	8	3	3	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	CFLAR-227	NM_001202516	exon2	c.C18A	p.I6I	AGTCATCCATCAG	.	159	80	160	3	.	6	4	2	0	0	A	201994606	C	A	201994606	2	1	9	1	0	0	0	0	0	0	0	1	3298	845	30	3		3	CFLAR	2	201994606	Silent	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	596827	201994606	41204767	85	1624										
INO80D	54891	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	206869265	206869265	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	tgcgctgaactgagggagttGctgcttgggagaggtggagg	20	5	0	3	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	INO80D-91	NM_017759	exon11	c.C2911A	p.Q971K	GGAGTTGCTGCTT	.	99	10	131	0	.	0	0	0	0	0	T	206869265	G	T	206869265	3	4	9	1	0	0	0	0	1	0	0	0	7770	1328	46	3	176	3	INO80D	2	206869265	Missense_Mutation	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	4874659	206869265	36330108	86	1625										
ZDBF2	57683	broad.mit.edu	37	chr2	207174885	207174885	+	Frame_Shift_Del	DEL	G	G	-													0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	ggggaaaaaaaaggttacctGggctgacttgcaaggtaagg					novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	ZDBF2-3	NM_020923	exon5	c.5633delG	p.W1878fs	TTACCTGGGCTGA	.	76	10	89	0	.	0	0	0	0	0	-	207174885	G	-	207174885	7	5	9	1	0	1	0	1	0	0	0	0	17636	1357	47	0	5643	0	ZDBF2	2	207174885	Frame_Shift_Del	DEL	G	TCGA-OR-A5JA-01A-11D-A29I-10	305620	207174885	36024488	87	1626										
KLF7	8609	bcgsc.ca	37	chr2	207988945	207988945	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	gtcccgagagagcaagatgtCcactgccgagctcttctcac	10	14	2	2	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	KLF7-91	NM_003709	exon2	c.G286T	p.D96Y	AGATGTCCACTGC	.	165	53	172	6	.	2	1	1	0	0	A	207988945	C	A	207988945	3	1	9	1	0	0	0	0	1	0	0	0	8372	855	30	3	634	3	KLF7	2	207988945	Missense_Mutation	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	814060	207988945	35210428	88	1627										
TTLL4	9654	broad.mit.edu	37	chr2	219602615	219602615	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	gggttgggcccaggcctcttGggcgtcccaccccagccagc	14	17	1	0	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	TTLL4-93	NM_014640	exon3	c.G216T	p.L72F	CCTCTTGGGCGTC	.	153	4	195	0	.	2	2	0	0	0	T	219602615	G	T	219602615	3	4	9	1	0	0	0	0	1	0	0	0	16767	1339	47	3	218	3	TTLL4	2	219602615	Missense_Mutation	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	11613670	219602615	23596758	89	1628										
ACSL3	2181	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	223773830	223773830	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	cacgtgaagttttaaatgagGaagatgaagtacaaccaaat	9	5	0	4	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	ACSL3-228	NM_203372	exon3	c.G340T	p.E114X	AATGAGGAAGATG	.	45	11	66	0	.	13	13	0	0	0	T	223773830	G	T	223773830	4	4	9	1	0	0	0	0	0	1	0	0	178	1175	41	3	342	3	ACSL3	2	223773830	Nonsense_Mutation	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	4171215	223773830	19425543	90	1629										
SP140	11262	ucsc.edu;bcgsc.ca	37	chr2	231155258	231155258	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	gtggggtgaagggaattttaCataagaagaaattgcagcaa	13	3	0	3	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	SP140-90	NM_007237	exon19	c.C1804A	p.H602N	ATTTTACATAAGA	.	110	20	162	3	.	1	1	0	0	0	A	231155258	C	A	231155258	3	1	9	1	0	0	0	0	1	0	0	0	14997	478	17	3	1995	3	SP140	2	231155258	Missense_Mutation	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	7381428	231155258	12044115	91	1630										
EIF4E2	9470	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	233431658	233431658	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	cagttcatggttggggaggaGatctgtggggctgtggtgtc	19	5	2	1	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	EIF4E2-90	NM_004846	exon5	c.G495T	p.E165D	GGAGGAGATCTGT	.	65	36	82	0	.	51	22	29	0	0	T	233431658	G	T	233431658	3	4	9	1	0	0	0	0	1	0	0	0	5043	933	33	3	513	3	EIF4E2	2	233431658	Missense_Mutation	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	2276400	233431658	9767715	92	1631										
DGKD	8527	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	234344974	234344974	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	ggttgcagattgcaatgcccCaccagtggttggaaggaaac	13	9	0	1	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	DGKD-676	NM_152879	exon7	c.C706A	p.H236N	ATGCCCCACCAGT	.	126	47	123	1	.	0	0	0	0	0	A	234344974	C	A	234344974	3	1	9	1	0	0	0	0	1	0	0	0	4478	594	21	3	756	3	DGKD	2	234344974	Missense_Mutation	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	913316	234344974	8854399	93	1632										
UGT1A3	54659	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	234638397	234638397	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	cagaccacatgacattcatgCaaagggtcaagaacatgctc	8	11	2	3	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	UGT1A3-24	NM_019093	exon1	c.C625A	p.Q209K	TTCATGCAAAGGG	.	215	50	284	0	.	0	0	0	0	0	A	234638397	C	A	234638397	3	1	9	1	0	0	0	0	1	0	0	0	16984	711	25	3	627	3	UGT1A3	2	234638397	Missense_Mutation	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	293423	234638397	8560976	94	1633										
COL6A3	1293	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	238275811	238275811	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	agccccacttggatggagtcGccatcttcataaactgtgtc	9	12	2	0	rs140516220		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	COL6A3-526	NM_004369	exon11	c.C5019T	p.G1673G	GGAGTCGCCATCT	.	109	19	145	1	G|1.000;A|0.000	1	1	0	0	0	A	238275811	G	A	238275811	2	1	9	1	0	0	0	0	0	0	0	1	3707	1074	38	1		1	COL6A3	2	238275811	Silent	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	3637414	238275811	4923562	95	1634										
IRAK2	3656	hgsc.bcm.edu;bcgsc.ca	37	chr3	10255048	10255048	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	tgacgtctacagagggcacaGgcacgggaagccattcgtct	13	11	2	2	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	IRAK2-574	NM_001570	exon5	c.G686T	p.R229M	GGCACAGGCACGG	.	67	4	92	0	.	1	1	0	0	0	T	10255048	G	T	10255048	3	4	9	1	0	0	0	0	1	0	0	0	7844	1000	35	3	704	3	IRAK2	3	10255048	Missense_Mutation	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10		10255048	187767382	96	1635										
GADL1	339896	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	30875737	30875737	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	gccatgcagaagcttgcggtGcttcctcgacatcaaagctg	11	12	1	1	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	GADL1-90	NM_207359	exon10	c.C940A	p.H314N	TGCGGTGCTTCCT	.	115	13	153	2	.	0	0	0	0	0	T	30875737	G	T	30875737	3	4	9	1	0	0	0	0	1	0	0	0	6204	1319	46	3	649	3	GADL1	3	30875737	Missense_Mutation	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	20620689	30875737	167146693	97	1636										
TTC21A	199223	bcgsc.ca	37	chr3	39156157	39156157	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	ctgtgacttcagggagcttcCtgccagccctcgtcctgaag	11	14	1	2	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	TTC21A-91	NM_145755	exon6	c.C640A	p.L214M	AGCTTCCTGCCAG	.	126	33	163	3	.	2	2	0	0	0	A	39156157	C	A	39156157	3	1	9	1	0	0	0	0	1	0	0	0	16725	680	24	3	662	3	TTC21A	3	39156157	Missense_Mutation	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	8280420	39156157	158866273	98	1637										
LARS2	23395	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	45589017	45589017	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	tcatcaacttcctggtgcaaGattgacagccaggaggctgc	11	11	2	2	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	LARS2-92	NM_015340	exon22	c.G2707T	p.D903Y	GTGCAAGATTGAC	.	94	18	84	1	.	15	12	3	0	0	T	45589017	G	T	45589017	3	4	9	1	0	0	0	0	1	0	0	0	8657	942	33	3	2785	3	LARS2	3	45589017	Missense_Mutation	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	6432860	45589017	152433413	99	1638										
SETD2	29072	broad.mit.edu;bcgsc.ca	37	chr3	47161746	47161746	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	ccttgcttggcacattccttCcatcgctgtgggtccctgaa	9	14	0	1	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	SETD2-1273	NM_014159	exon3	c.G4380T	p.W1460C	TTCCTTCCATCGC	.	60	24	90	2	.	5	3	2	0	0	A	47161746	C	A	47161746	3	1	9	1	0	0	0	0	1	0	0	0	14166	856	30	3	3390	3	SETD2	3	47161746	Missense_Mutation	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	1572729	47161746	150860684	100	1639										
PTPN23	25930	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr3	47454406	47454406	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	catcttcctccccgccccccCtttcctccccactacctgag	3	24	1	1	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	PTPN23-227	NM_015466	exon25	c.C4642A	p.L1548I	CCCCCCCTTTCCT	.	30	16	27	0	.	1	0	1	0	0	A	47454406	C	A	47454406	3	1	9	1	0	0	0	0	1	0	0	0	12823	681	24	3	4740	3	PTPN23	3	47454406	Missense_Mutation	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	292660	47454406	150568024	101	1640										
COL7A1	1294	broad.mit.edu;bcgsc.ca	37	chr3	48632594	48632594	+	Translation_Start_Site	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	ccagaagccgcagcgtcatcCtaggcagtaaaagccgtcag	11	13	2	1	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	COL7A1-160	.	.	.	.	GTCATCCTAGGCA	.	125	21	65	1	.	0	0	0	0	0	A	48632594	C	A	48632594	1	1	9	1	0	0	0	0	0	0	0	0	3710	696	24	3		3	COL7A1	3	48632594	Translation_Start_Site	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	1178188	48632594	149389836	102	1641										
USP19	10869	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	49147976	49147976	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	gtggttgatgacagcatataGatcgtagctgggcagctgct	14	7	0	3	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	USP19-663	NM_001199161	exon25	c.C3760A	p.L1254I	CATATAGATCGTA	.	100	18	127	1	.	27	24	3	0	0	T	49147976	G	T	49147976	3	4	9	1	0	0	0	0	1	0	0	0	17088	933	33	3	517	3	USP19	3	49147976	Missense_Mutation	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	515382	49147976	148874454	103	1642										
MST1	4485	bcgsc.ca	37	chr3	49722288	49722288	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	tctggaacagggtgcccaacCatacctcatagcccgtgaga	10	13	2	1	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	MST1-278	NM_020998	exon15	c.G1652T	p.W551L	CCCAACCATACCT	.	270	27	258	3	.	23	23	0	0	0	A	49722288	C	A	49722288	3	1	9	1	0	0	0	0	1	0	0	0	9918	595	21	3	541	3	MST1	3	49722288	Missense_Mutation	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	574312	49722288	148300142	104	1643										
SLC38A3	10991	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	50256024	50256024	+	Splice_Site	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	caccctccctgcctgccacaGacggggtggagtcggagctg	14	15	0	1	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	SLC38A3-67	NM_006841	exon13	c.1037-1G>T	.	GCCACAGACGGGG	.	81	16	76	1	.	0	0	0	0	0	T	50256024	G	T	50256024	5	4	9	1	0	0	0	0	0	0	1	0	14640	956	33	3	1082	3	SLC38A3	3	50256024	Splice_Site	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	533736	50256024	147766406	105	1644										
PBRM1	55193	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	52643651	52643651	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	gactttgtgtagaacaagagCatctttgtagatcaaagact	9	6	2	4	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	PBRM1-575	NM_018313	exon17	c.G2245T	p.A749S	CAAGAGCATCTTT	.	103	14	109	1	.	3	3	0	0	0	A	52643651	C	A	52643651	3	1	9	1	0	0	0	0	1	0	0	0	11520	710	25	3	2715	3	PBRM1	3	52643651	Missense_Mutation	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	2387627	52643651	145378779	106	1645										
ITIH3	3699	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	52841088	52841088	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	ggccgtgccgagcactttcaGctggctggacacagtcacag	13	13	2	0	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	ITIH3-93	NM_002217	exon19	c.G2228T	p.S743I	CTTTCAGCTGGCT	.	134	24	153	1	.	3	2	1	0	0	T	52841088	G	T	52841088	3	4	9	1	0	0	0	0	1	0	0	0	7926	971	34	3	2302	3	ITIH3	3	52841088	Missense_Mutation	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	197437	52841088	145181342	107	1646										
FLNB	2317	broad.mit.edu	37	chr3	58145372	58145372	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	tgcaaaggtgcacagcccctCtggagccgtggaggagtgcc	15	12	1	0	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	FLNB-593	NM_001164317	exon43	c.C7073A	p.S2358Y	GCCCCTCTGGAGC	.	36	8	52	2	.	100	78	22	0	0	A	58145372	C	A	58145372	3	1	9	1	0	0	0	0	1	0	0	0	5953	913	32	3	7243	3	FLNB	3	58145372	Missense_Mutation	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	5304284	58145372	139877058	108	1647										
EPHA6	285220	ucsc.edu;bcgsc.ca	37	chr3	96706665	96706665	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	ttggccatgtttcctgatacCattccaagggttgattcctc	8	11	0	2	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	EPHA6-1561	NM_001080448	exon3	c.C942A	p.T314T	TGATACCATTCCA	.	104	50	181	2	.	0	0	0	0	0	A	96706665	C	A	96706665	2	1	9	1	0	0	0	0	0	0	0	1	5184	581	21	3		3	EPHA6	3	96706665	Silent	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	38561293	96706665	101315765	109	1648										
EPHA6	285220	broad.mit.edu;bcgsc.ca	37	chr3	97194260	97194260	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	accgccgctgttggcggattCactctcctcgtcatcctcac	8	17	4	0	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	EPHA6-1561	NM_001080448	exon8	c.C1959A	p.F653L	CGGATTCACTCTC	.	56	21	75	2	.	0	0	0	0	0	A	97194260	C	A	97194260	3	1	9	1	0	0	0	0	1	0	0	0	5184	825	29	3	2057	3	EPHA6	3	97194260	Missense_Mutation	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	487595	97194260	100828170	110	1649										
ATG3	64422	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	112257000	112257000	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	tcaatttacaaacctcatctGtttccaacaatccactctct	1	14	4	0	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	ATG3-93	NM_022488	exon8	c.C503A	p.T168K	TCATCTGTTTCCA	.	119	21	183	2	.	0	0	0	0	0	T	112257000	G	T	112257000	3	4	9	1	0	0	0	0	1	0	0	0	1096	1377	48	3	461	3	ATG3	3	112257000	Missense_Mutation	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	15062740	112257000	85765430	111	1650										
LRRC58	116064	hgsc.bcm.edu	37	chr3	120068022	120068022	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	gactccagcgtctcggtggaCacgctgaggcgggaccagtt	15	12	1	1	rs6770482		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	.	NM_001099678	exon1	c.G69C	p.V23V	GGTGGACACGCTG	.	5	5	0	0	C|0.826;G|0.174	0	0	0	0	0	G	120068022	C	G	120068022	2	3	9	1	0	0	0	0	0	0	0	1	9041	465	17	3		3	LRRC58	3	120068022	Silent	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	7811022	120068022	77954408	112	1651										
POLQ	10721	ucsc.edu;bcgsc.ca	37	chr3	121178920	121178920	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	ttttgcctgctgcctcagatCatccccaacagactctggct	7	15	3	2	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	POLQ-664	NM_199420	exon25	c.G7129T	p.D2377Y	TCAGATCATCCCC	.	120	25	212	3	.	3	3	0	0	0	A	121178920	C	A	121178920	3	1	9	1	0	0	0	0	1	0	0	0	12237	826	29	3	667	3	POLQ	3	121178920	Missense_Mutation	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	1110898	121178920	76843510	113	1652										
CASR	846	broad.mit.edu	37	chr3	121976121	121976121	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	ttgattctttgaaccttgatGagttctgcaactgctcagag	9	8	3	5	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	CASR-97	NM_001178065	exon3	c.G379T	p.E127X	CTTGATGAGTTCT	.	78	15	91	2	.	0	0	0	0	0	T	121976121	G	T	121976121	4	4	9	1	0	0	0	0	0	1	0	0	2688	1291	45	3	385	3	CASR	3	121976121	Nonsense_Mutation	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	797201	121976121	76046309	114	1653										
PLXNA1	5361	hgsc.bcm.edu	37	chr3	126733053	126733053	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	tacaagtgcccggccctgcgCgagagctgcggcctctgcct	13	16	1	1	rs11719489	byfrequency	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	PLXNA1-93	NM_032242	exon11	c.C2439T	p.R813R	CCTGCGCGAGAGC	.	37	37	0	0	C|0.900;T|0.100	1	0	1	0	0	T	126733053	C	T	126733053	2	4	9	1	0	0	0	0	0	0	0	1	12148	755	27	1		1	PLXNA1	3	126733053	Silent	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	4756932	126733053	71289377	115	1654										
BFSP2	8419	broad.mit.edu	37	chr3	133169164	133169164	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	caggatgtgaagctgctgcaCaaacagttggcagggtgtga	15	7	0	2	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	BFSP2-90	NM_003571	exon4	c.C747A	p.H249Q	GCTGCACAAACAG	.	111	3	109	0	.	0	0	0	0	0	A	133169164	C	A	133169164	3	1	9	1	0	0	0	0	1	0	0	0	1417	477	17	3	761	3	BFSP2	3	133169164	Missense_Mutation	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	6436111	133169164	64853266	116	1655										
PIK3CB	5291	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	138478043	138478043	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	tataagaaatggtagcttccCgaggtacctccaactggata	9	9	0	1	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	PIK3CB-1311	NM_006219	exon1	c.G143T	p.R48L	GCTTCCCGAGGTA	.	170	22	239	1	.	0	0	0	0	0	A	138478043	C	A	138478043	3	1	9	1	0	0	0	0	1	0	0	0	11943	652	23	2	3155	2	PIK3CB	3	138478043	Missense_Mutation	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	5308879	138478043	59544387	117	1656										
NMNAT3	349565	ucsc.edu;bcgsc.ca	37	chr3	139292460	139292460	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	ctgcaggggtcgagaagagtGccttgccatggtctgggcct	16	10	1	2	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	NMNAT3-90	NM_178177	exon4	c.C245A	p.A82E	AAGAGTGCCTTGC	.	115	51	159	2	.	7	0	7	0	0	T	139292460	G	T	139292460	3	4	9	1	0	0	0	0	1	0	0	0	10529	1319	46	3	410	3	NMNAT3	3	139292460	Missense_Mutation	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	814417	139292460	58729970	118	1657										
PAQR9	344838	ucsc.edu;bcgsc.ca	37	chr3	142681441	142681441	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	atgctgagcggcatgacgaaGacgaaggtgcgcagcgcgaa	16	9	0	3	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	PAQR9-68	NM_198504	exon1	c.C738A	p.V246V	GACGAAGACGAAG	.	267	43	228	2	.	0	0	0	0	0	T	142681441	G	T	142681441	2	4	9	1	0	0	0	0	0	0	0	1	11471	929	33	3		3	PAQR9	3	142681441	Silent	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	3388981	142681441	55340989	119	1658										
ZIC1	7545	hgsc.bcm.edu	37	chr3	147127937	147127937	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	cccccagtacccagcgatcgGcgtgaccacctttggcgcgt	11	17	0	1	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	ZIC1-91	NM_003412	exon1	c.G38T	p.G13V	CGATCGGCGTGAC	.	28	6	4	0	.	0	0	0	0	0	T	147127937	G	T	147127937	3	4	9	1	0	0	0	0	1	0	0	0	17715	1203	42	3	40	3	ZIC1	3	147127937	Missense_Mutation	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	4446496	147127937	50894493	120	1659										
CPB1	1360	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr3	148575243	148575243	+	Splice_Site	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	ttattcctgtttcttttgcaGaatgccctggctaaagctac	7	10	1	1	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	CPB1-92	NM_001871	exon10	c.982-1G>T	.	TTTGCAGAATGCC	.	83	7	93	0	.	3	3	0	0	0	T	148575243	G	T	148575243	5	4	9	1	0	0	0	0	0	0	1	0	3802	956	33	3	1019	3	CPB1	3	148575243	Splice_Site	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	1447306	148575243	49447187	121	1660										
TSC22D2	9819	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	150128968	150128968	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	caccactttctctcattgctGaaaataagcctgttgtgaag	7	10	2	2	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	TSC22D2-91	NM_014779	exon1	c.G1831T	p.E611X	ATTGCTGAAAATA	.	98	35	122	1	.	8	1	7	0	0	T	150128968	G	T	150128968	4	4	9	1	0	0	0	0	0	1	0	0	16646	1291	45	3	1833	3	TSC22D2	3	150128968	Nonsense_Mutation	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	1553725	150128968	47893462	122	1661										
PTX3	5806	broad.mit.edu;ucsc.edu	37	chr3	157160724	157160724	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	ggaatattgttgggtggggaGtcacagagatccagccacat	14	7	1	1	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	PTX3-514	NM_002852	exon3	c.G1102T	p.V368F	TGGGGAGTCACAG	.	43	4	73	1	.	1	1	0	0	0	T	157160724	G	T	157160724	3	4	9	1	0	0	0	0	1	0	0	0	12857	1029	36	3	1112	3	PTX3	3	157160724	Missense_Mutation	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	7031756	157160724	40861706	123	1662										
KPNA4	3840	broad.mit.edu	37	chr3	160243877	160243877	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	caagacttatgacataatctCtacactggggcccatcacct	6	13	2	2	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	KPNA4-226	NM_002268	exon9	c.G575T	p.R192I	TAATCTCTACACT	.	187	6	266	2	.	9	8	1	0	0	A	160243877	C	A	160243877	3	1	9	1	0	0	0	0	1	0	0	0	8453	913	32	3	1026	3	KPNA4	3	160243877	Missense_Mutation	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	3083153	160243877	37778553	124	1663										
B3GALNT1	8706	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	160804280	160804280	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	gcctggctttcacatctgaaGggtgggaggtcaccagaatg	14	9	3	2	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	B3GALNT1-91	NM_001038628	exon8	c.C263A	p.P88H	TCTGAAGGGTGGG	.	46	22	36	0	.	0	0	0	0	0	T	160804280	G	T	160804280	3	4	9	1	0	0	0	0	1	0	0	0	1246	1000	35	3	736	3	B3GALNT1	3	160804280	Missense_Mutation	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	560403	160804280	37218150	125	1664										
ZBBX	79740	ucsc.edu;bcgsc.ca	37	chr3	167033573	167033573	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	gcatcagctaatttaactttGtaaggcacaatattttctgc	6	8	2	0	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	ZBBX-92	NM_024687	exon15	c.C1239A	p.Y413X	AACTTTGTAAGGC	.	142	19	234	2	.	0	0	0	0	0	T	167033573	G	T	167033573	4	4	9	1	0	0	0	0	0	1	0	0	17554	1372	48	3	1191	3	ZBBX	3	167033573	Nonsense_Mutation	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	6229293	167033573	30988857	126	1665										
LRRC34	151827	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	169514567	169514567	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	gtagcgcaggctactgttcaGatacagtgcatcacataact	9	10	2	1	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	LRRC34-90	NM_001172779	exon8	c.C874A	p.L292M	TGTTCAGATACAG	.	105	19	161	2	.	0	0	0	0	0	T	169514567	G	T	169514567	3	4	9	1	0	0	0	0	1	0	0	0	9016	933	33	3	558	3	LRRC34	3	169514567	Missense_Mutation	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	2480994	169514567	28507863	127	1666										
SLC7A14	57709	broad.mit.edu	37	chr3	170198352	170198352	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	cagaagatgaacatgaggatGaagagcaggagcacgcagat	14	6	0	7	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	SLC7A14-94	NM_020949	exon7	c.C1719A	p.F573L	GAGGATGAAGAGC	.	63	10	87	2	.	0	0	0	0	0	T	170198352	G	T	170198352	3	4	9	1	0	0	0	0	1	0	0	0	14731	1281	45	3	604	3	SLC7A14	3	170198352	Missense_Mutation	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	683785	170198352	27824078	128	1667										
TNIK	23043	broad.mit.edu	37	chr3	170928941	170928941	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	atgcctggtgggttctttttGataaaagcaccatagtatgt	10	6	1	1	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	TNIK-550	NM_001161562	exon4	c.C270A	p.I90I	CTTTTTGATAAAA	.	51	6	56	2	.	3	3	0	0	0	T	170928941	G	T	170928941	2	4	9	1	0	0	0	0	0	0	0	1	16350	1280	45	3		3	TNIK	3	170928941	Silent	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	730589	170928941	27093489	129	1668										
ECT2	1894	broad.mit.edu	37	chr3	172520657	172520657	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	ttcaacctatacaggctaatCttttatcttctcaccgaagc	4	12	4	0	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	ECT2-724	NM_001258315	exon20	c.C1993G	p.L665V	GCTAATCTTTTAT	.	35	6	43	2	.	0	0	0	0	0	G	172520657	C	G	172520657	3	3	9	1	0	0	0	0	1	0	0	0	4912	913	32	3	1970	3	ECT2	3	172520657	Missense_Mutation	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	1591716	172520657	25501773	130	1669										
NAALADL2	254827	bcgsc.ca	37	chr3	175189492	175189492	+	Silent	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	ctccacagtcccataaggggGaactctagtctgtatcctgt	9	12	2	0	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	NAALADL2-47	NM_207015	exon9	c.G1599T	p.G533G	AAGGGGGAACTCT	.	137	56	265	5	.	0	0	0	0	0	T	175189492	G	T	175189492	2	4	9	1	0	0	0	0	0	0	0	1	10158	1161	41	3		3	NAALADL2	3	175189492	Silent	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	2668835	175189492	22832938	131	1670										
USP13	8975	ucsc.edu	37	chr3	179483602	179483602	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	aacattatttctgaggccaaGcccgaaggacctagagtcaa	9	10	2	2	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	USP13-659	NM_003940	exon19	c.G2379T	p.K793N	GGCCAAGCCCGAA	.	76	11	123	2	.	7	5	2	0	0	T	179483602	G	T	179483602	3	4	9	1	0	0	0	0	1	0	0	0	17082	962	34	3	2453	3	USP13	3	179483602	Missense_Mutation	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	4294110	179483602	18538828	132	1671										
TTC14	151613	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr3	180324359	180324359	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	cacagaaatgcaagaaaataCctctgccagacacttgtaga	7	10	1	4	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	TTC14-91	NM_001042601	exon9	c.C1140A	p.Y380X	AAAATACCTCTGC	.	91	9	100	0	.	3	3	0	0	0	A	180324359	C	A	180324359	4	1	9	1	0	0	0	0	0	1	0	0	16719	518	18	3	1174	3	TTC14	3	180324359	Nonsense_Mutation	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	840757	180324359	17698071	133	1672										
EHHADH	1962	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	184910464	184910464	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	tgataccaacccttacctgtCttctggccaaatcgtcctaa	5	14	2	1	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	EHHADH-93	NM_001966	exon7	c.G1722T	p.K574N	ACCTGTCTTCTGG	.	89	30	93	0	.	3	3	0	0	0	A	184910464	C	A	184910464	3	1	9	1	0	0	0	0	1	0	0	0	4993	912	32	3	453	3	EHHADH	3	184910464	Missense_Mutation	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	4586105	184910464	13111966	134	1673										
GAK	2580	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	882712	882712	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	tctgtcccaccccgcagaatGtccaggaagccgccatacgg	10	16	1	1	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	GAK-568	NM_005255	exon11	c.C1128A	p.D376E	CAGAATGTCCAGG	.	116	35	86	1	.	30	23	7	0	0	T	882712	G	T	882712	3	4	9	1	0	0	0	0	1	0	0	0	6215	1368	48	3	2879	3	GAK	4	882712	Missense_Mutation	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10		882712	190271564	135	1674										
TMEM175	84286	broad.mit.edu;ucsc.edu	37	chr4	947039	947039	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	gagcccgcagatccagcgctCtgcccacagggctctgtacc	11	17	2	1	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	TMEM175-90	NM_032326	exon8	c.C524A	p.S175Y	AGCGCTCTGCCCA	.	105	16	84	1	.	98	92	6	0	0	A	947039	C	A	947039	3	1	9	1	0	0	0	0	1	0	0	0	16128	913	32	3	550	3	TMEM175	4	947039	Missense_Mutation	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	64327	947039	190207237	136	1675										
CRIPAK	285464	hgsc.bcm.edu	37	chr4	1388755	1388755	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	cccgcctgctcacacgtgccCatgcggagtgcccgcctgct	11	19	1	0	rs141481663	byfrequency	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	CRIPAK-90	NM_175918	exon1	c.C456G	p.P152P	CGTGCCCATGCGG	.	113	15	8	0	C|0.960;G|0.040	55	18	37	0	0	G	1388755	C	G	1388755	2	3	9	1	0	0	0	0	0	0	0	1	3883	581	21	3		3	CRIPAK	4	1388755	Silent	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	441716	1388755	189765521	137	1676										
TACC3	10460	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	1742615	1742615	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	agaaagttctaaaagaaaaaGaccaacttaccacagatctg	6	8	2	4	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	TACC3-91	NM_006342	exon13	c.G2125T	p.D709Y	GAAAAAGACCAAC	.	126	20	88	1	.	90	82	8	0	0	T	1742615	G	T	1742615	3	4	9	1	0	0	0	0	1	0	0	0	15540	942	33	3	2171	3	TACC3	4	1742615	Missense_Mutation	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	353860	1742615	189411661	138	1677										
OTOP1	133060	hgsc.bcm.edu	37	chr4	4228456	4228456	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	gctggcgcgcacaccgccccGccggggggccggggattccg	18	17	0	0	rs73191872	bycluster;by1000genomes	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	OTOP1-92	NM_177998	exon1	c.C136A	p.R46R	CGCCCCGCCGGGG	.	53	20	9	0	.	0	0	0	0	0	T	4228456	G	T	4228456	2	4	9	1	0	0	0	0	0	0	0	1	11334	1086	38	2		2	OTOP1	4	4228456	Silent	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	2485841	4228456	186925820	139	1678										
OTOP1	133060	hgsc.bcm.edu	37	chr4	4228472	4228472	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	ccccgccggggggccggggaTtccggggacctcggggccga	20	15	0	0	rs76810534		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	OTOP1-92	NM_177998	exon1	c.A120G	p.E40E	CGGGGATTCCGGG	.	39	13	5	0	.	0	0	0	0	0	C	4228472	T	C	4228472	2	2	9	1	0	0	0	0	0	0	0	1	11334	1490	52	4		4	OTOP1	4	4228472	Silent	SNP	T	TCGA-OR-A5JA-01A-11D-A29I-10	16	4228472	186925804	140	1679										
HTRA3	94031	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	8293280	8293280	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	tggactacatccagacggatGccatcatcaacgtgagtccc	9	13	2	2	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	HTRA3-91	NM_053044	exon4	c.G892T	p.A298S	ACGGATGCCATCA	.	133	17	110	1	.	0	0	0	0	0	T	8293280	G	T	8293280	3	4	9	1	0	0	0	0	1	0	0	0	7476	1319	46	3	906	3	HTRA3	4	8293280	Missense_Mutation	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	4064808	8293280	182860996	141	1680										
DEFB131	644414	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	9452101	9452101	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	taaagccagaagcttcatttCtaatgatgaatgtccttcag	7	8	3	3	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	DEFB131-68	NM_001040448	exon2	c.C74A	p.S25Y	TCATTTCTAATGA	.	224	40	252	0	.	0	0	0	0	0	A	9452101	C	A	9452101	3	1	9	1	0	0	0	0	1	0	0	0	4427	913	32	3	80	3	DEFB131	4	9452101	Missense_Mutation	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	1158821	9452101	181702175	142	1681										
ZCCHC4	29063	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	25351214	25351214	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	tggcttggttgaacctctggCtattacattcaagaagttaa	9	7	2	2	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	ZCCHC4-70	NM_024936	exon7	c.C860A	p.A287D	CTCTGGCTATTAC	.	156	57	154	1	.	1	1	0	0	0	A	25351214	C	A	25351214	3	1	9	1	0	0	0	0	1	0	0	0	17627	797	28	3	886	3	ZCCHC4	4	25351214	Missense_Mutation	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	15899113	25351214	165803062	143	1682										
TBC1D1	23216	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	37903767	37903767	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	catctgctttctaacgaggtCtcggtggattttggcctgca	11	10	3	0	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	TBC1D1-91	NM_015173	exon2	c.C51A	p.V17V	CGAGGTCTCGGTG	.	177	47	111	0	.	0	0	0	0	0	A	37903767	C	A	37903767	2	1	9	1	0	0	0	0	0	0	0	1	15634	900	32	3		3	TBC1D1	4	37903767	Silent	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	12552553	37903767	153250509	144	1683										
WDR19	57728	bcgsc.ca	37	chr4	39188188	39188188	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	tattgtgaaaatctttgatcGccatggtcaaaaaagaagtg	9	5	2	3	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	WDR19-67	NM_025132	exon3	c.G128T	p.R43L	TTGATCGCCATGG	.	181	57	121	3	.	1	1	0	0	0	T	39188188	G	T	39188188	3	4	9	1	0	0	0	0	1	0	0	0	17317	1087	38	2	138	2	WDR19	4	39188188	Missense_Mutation	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	1284421	39188188	151966088	145	1684										
RBM47	54502	hgsc.bcm.edu	37	chr4	40440854	40440854	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	acgccctcgggcaccttggcGgaggacccggcggccgagtc	16	16	0	0	rs1052153	byfrequency	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	RBM47-25	NM_001098634	exon4	c.C57G	p.S19S	CTTGGCGGAGGAC	.	9	8	0	0	G|0.794;C|0.206	4	0	4	0	0	C	40440854	G	C	40440854	2	2	9	1	0	0	0	0	0	0	0	1	13176	1103	39	2		2	RBM47	4	40440854	Silent	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	1252666	40440854	150713422	146	1685										
CORIN	10699	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	47746504	47746504	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	tttctaaactgggagcatctGaggaaatccggccaggagta	12	8	2	1	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	CORIN-91	NM_006587	exon5	c.C714A	p.L238L	GCATCTGAGGAAA	.	117	12	85	0	.	0	0	0	0	0	T	47746504	G	T	47746504	2	4	9	1	0	0	0	0	0	0	0	1	3758	1277	45	3		3	CORIN	4	47746504	Silent	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	7305650	47746504	143407772	147	1686										
ZAR1	326340	hgsc.bcm.edu	37	chr4	48492434	48492434	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	gcgggcggcagctggcagcaGcgcggcaggggctgccttcc	19	14	0	0	rs10008444		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	ZAR1-90	NM_175619	exon1	c.G126C	p.Q42H	GCAGCAGCGCGGC	.	9	9	0	0	G|0.025;C|0.975	0	0	0	0	0	C	48492434	G	C	48492434	3	2	9	1	0	0	0	0	1	0	0	0	17553	962	34	3	128	3	ZAR1	4	48492434	Missense_Mutation	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	745930	48492434	142661842	148	1687										
SCFD2	152579	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	54011642	54011642	+	Silent	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	gaataaatatatatgagaagGatcagcagttcctcagggct	10	6	2	1	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	SCFD2-93	NM_152540	exon5	c.C1419A	p.I473I	GAGAAGGATCAGC	.	127	22	106	1	.	23	21	2	0	0	T	54011642	G	T	54011642	2	4	9	1	0	0	0	0	0	0	0	1	13925	1164	41	3		3	SCFD2	4	54011642	Silent	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	5519208	54011642	137142634	149	1688										
SRP72	6731	ucsc.edu;bcgsc.ca	37	chr4	57352563	57352563	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	cacagttgaaaatttctcaaGgtattatggttttcatcatg	7	6	3	1	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	SRP72-116	NM_006947	exon11	c.G1159T	p.G387C	TCTCAAGGTATTA	.	216	46	167	3	.	0	0	0	0	0	T	57352563	G	T	57352563	3	4	9	1	0	0	0	0	1	0	0	0	15194	1014	35	3	1201	3	SRP72	4	57352563	Missense_Mutation	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	3340921	57352563	133801713	150	1689										
SLC4A4	8671	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr4	72363343	72363343	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	ctcatgtcttttatcctcttCttgggaacctacacctcttc	4	14	5	0	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	SLC4A4-95	NM_001098484	exon16	c.C2100A	p.F700L	CCTCTTCTTGGGA	.	131	11	92	0	.	0	0	0	0	0	A	72363343	C	A	72363343	3	1	9	1	0	0	0	0	1	0	0	0	14691	912	32	3	2279	3	SLC4A4	4	72363343	Missense_Mutation	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	15010780	72363343	118790933	151	1690										
ANKRD17	26057	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr4	73941997	73941997	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	tcatgtgaggtgcccagggtCcagtccacacctatgaatat	10	11	1	2	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	ANKRD17-234	NM_032217	exon34	c.G7763C	p.G2588A	CAGGGTCCAGTCC	.	200	11	142	0	.	0	0	0	0	0	G	73941997	C	G	73941997	3	3	9	1	0	0	0	0	1	0	0	0	646	855	30	3	52	3	ANKRD17	4	73941997	Missense_Mutation	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	1578654	73941997	117212279	152	1691										
ANKRD17	26057	broad.mit.edu	37	chr4	74005860	74005860	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	ctgtgcattcttttctatggCttcttttatcctctgttcca	5	11	4	0	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	ANKRD17-234	NM_032217	exon15	c.G2473T	p.A825S	CTATGGCTTCTTT	.	112	5	108	0	.	1	1	0	0	0	A	74005860	C	A	74005860	3	1	9	1	0	0	0	0	1	0	0	0	646	797	28	3	5418	3	ANKRD17	4	74005860	Missense_Mutation	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	63863	74005860	117148416	153	1692										
CXCL1	2919	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	74735403	74735403	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	taggagcgtccgtggccactGaactgcgctgccagtgcttg	14	12	0	1	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	CXCL1-204	NM_001511	exon2	c.G118T	p.E40X	GCCACTGAACTGC	.	221	71	164	0	.	0	0	0	0	0	T	74735403	G	T	74735403	4	4	9	1	0	0	0	0	0	1	0	0	4083	1291	45	3	124	3	CXCL1	4	74735403	Nonsense_Mutation	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	729543	74735403	116418873	154	1693										
PARM1	25849	broad.mit.edu;bcgsc.ca	37	chr4	75938041	75938041	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	gagcctcccacactcatctcCcctcaagctccagcctcatc	4	21	4	0	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	PARM1-1	NM_015393	exon2	c.C450A	p.S150S	CATCTCCCCTCAA	.	212	12	171	1	.	3	3	0	0	0	A	75938041	C	A	75938041	2	1	9	1	0	0	0	0	0	0	0	1	11481	610	22	3		3	PARM1	4	75938041	Silent	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	1202638	75938041	115216235	155	1694										
CDKL2	8999	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	76522169	76522169	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	cccattccagaattaatgctGggagcaactgcagaaagatt	9	9	0	3	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	CDKL2-454	NM_003948	exon9	c.C1272A	p.P424P	AATGCTGGGAGCA	.	222	58	183	2	.	0	0	0	0	0	T	76522169	G	T	76522169	2	4	9	1	0	0	0	0	0	0	0	1	3160	1335	47	3		3	CDKL2	4	76522169	Silent	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	584128	76522169	114632107	156	1695										
COQ2	27235	broad.mit.edu	37	chr4	84205941	84205941	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	gctggtgaggccgggacgagCtcggattgacgtcattcccc	15	12	1	2	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	COQ2-92	NM_015697	exon1	c.G127A	p.A43T	GACGAGCTCGGAT	.	9	5	10	0	.	0	0	0	0	0	T	84205941	C	T	84205941	3	4	9	1	0	0	0	0	1	0	0	0	3751	797	28	3	1166	3	COQ2	4	84205941	Missense_Mutation	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	7683772	84205941	106948335	157	1696										
DAPP1	27071	bcgsc.ca	37	chr4	100738081	100738081	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	aagggcgcgaatgggcagagCagaacttctagaagggaaga	16	6	1	4	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	DAPP1-93	NM_014395	exon1	c.C11A	p.A4E	GCAGAGCAGAACT	.	128	16	103	2	.	0	0	0	0	0	A	100738081	C	A	100738081	3	1	9	1	0	0	0	0	1	0	0	0	4245	710	25	3	13	3	DAPP1	4	100738081	Missense_Mutation	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	16532140	100738081	90416195	158	1697										
CENPE	1062	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	104082566	104082566	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	ggcatcaagggctacagtttCagcatcaaacagagtctgct	10	10	4	1	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	CENPE-277	NM_001813	exon19	c.G1891T	p.E631X	CAGTTTCAGCATC	.	138	15	125	0	.	2	2	0	0	0	A	104082566	C	A	104082566	4	1	9	1	0	0	0	0	0	1	0	0	3236	835	29	3	6338	3	CENPE	4	104082566	Nonsense_Mutation	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	3344485	104082566	87071710	159	1698										
ARHGEF38	54848	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr4	106534599	106534599	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	tgagtccgtgcatcagatatCagccaagctgctgtcattgt	10	10	3	2	rs61751053	byfrequency;alternate_allele	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	ARHGEF38-292	NM_001242729	exon3	c.C443A	p.S148X	AGATATCAGCCAA	.	98	15	111	0	C|0.995;T|0.005	0	0	0	0	0	A	106534599	C	A	106534599	4	1	9	1	0	0	0	0	0	1	0	0	907	838	29	3	453	3	ARHGEF38	4	106534599	Nonsense_Mutation	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	2452033	106534599	84619677	160	1699										
CYP2U1	113612	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	108866353	108866353	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	gctccttgtgctttggccagCgctttgattacactaatagt	9	10	0	1	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	CYP2U1-90	NM_183075	exon2	c.C718A	p.R240S	GGCCAGCGCTTTG	.	136	23	102	1	.	1	1	0	0	0	A	108866353	C	A	108866353	3	1	9	1	0	0	0	0	1	0	0	0	4181	768	27	2	724	2	CYP2U1	4	108866353	Missense_Mutation	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	2331754	108866353	82287923	161	1700										
HADH	3033	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	108944697	108944697	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	agactttagcaaagccctagGaaagcatcctgtttcttgca	8	10	1	1	rs144699575	byfrequency;alternate_allele	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	HADH-91	NM_005327	exon5	c.G614T	p.G205V	CCCTAGGAAAGCA	.	131	17	108	0	G|0.999;C|0.001	86	74	12	0	0	T	108944697	G	T	108944697	3	4	9	1	0	0	0	0	1	0	0	0	6963	1174	41	3	632	3	HADH	4	108944697	Missense_Mutation	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	78344	108944697	82209579	162	1701										
ENPEP	2028	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr4	111441505	111441505	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	ccaagagctaacccttctcaGcccccttcagatcttgggta	7	15	3	2	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	ENPEP-157	NM_001977	exon10	c.G1710T	p.Q570H	TTCTCAGCCCCCT	.	165	14	141	0	.	3	3	0	0	0	T	111441505	G	T	111441505	3	4	9	1	0	0	0	0	1	0	0	0	5141	962	34	3	1748	3	ENPEP	4	111441505	Missense_Mutation	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	2496808	111441505	79712771	163	1702										
ANK2	287	broad.mit.edu;bcgsc.ca	37	chr4	114257869	114257869	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	cattcctgtccccaaagcttCaagtgatgtcatgttgaatg	8	10	2	2	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	ANK2-583	NM_001148	exon31	c.C3728A	p.S1243X	AAGCTTCAAGTGA	.	193	8	132	0	.	2	2	0	0	0	A	114257869	C	A	114257869	4	1	9	1	0	0	0	0	0	1	0	0	621	838	29	3	3915	3	ANK2	4	114257869	Nonsense_Mutation	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	2816364	114257869	76896407	164	1703										
USP53	54532	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	120182880	120182880	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	ttttaaacagcttttttataGagttactgatgaaaatgcca	6	5	0	3	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	USP53-660	NM_019050	exon11	c.G833T	p.R278I	TTTATAGAGTTAC	.	97	19	92	0	.	0	0	0	0	0	T	120182880	G	T	120182880	3	4	9	1	0	0	0	0	1	0	0	0	17122	942	33	3	863	3	USP53	4	120182880	Missense_Mutation	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	5925011	120182880	70971396	165	1704										
ANXA5	308	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	122607510	122607510	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	tcaaatccagggaagtcagtCacagtgcctctgagaaccta	9	11	4	1	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	ANXA5-91	NM_001154	exon3	c.G27T	p.V9V	GTCAGTCACAGTG	.	68	9	65	0	.	716	629	87	0	0	A	122607510	C	A	122607510	2	1	9	1	0	0	0	0	0	0	0	1	721	813	29	3		3	ANXA5	4	122607510	Silent	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	2424630	122607510	68546766	166	1705										
FAT4	79633	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	126329878	126329878	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	tttcagcttgaattcatacaGcacatctttaatggagaatc	6	8	3	2	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	FAT4-108	NM_024582	exon4	c.G5849T	p.S1950I	CATACAGCACATC	.	105	22	84	0	.	0	0	0	0	0	T	126329878	G	T	126329878	3	4	9	1	0	0	0	0	1	0	0	0	5711	971	34	3	5863	3	FAT4	4	126329878	Missense_Mutation	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	3722368	126329878	64824398	167	1706										
FAT4	79633	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	126329907	126329907	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	taatggagaatctacctgtgGgatctactgttcttgtgttt	10	6	3	1	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	FAT4-108	NM_024582	exon4	c.G5878T	p.G1960X	CCTGTGGGATCTA	.	86	33	76	0	.	0	0	0	0	0	T	126329907	G	T	126329907	4	4	9	1	0	0	0	0	0	1	0	0	5711	1233	43	3	5892	3	FAT4	4	126329907	Nonsense_Mutation	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	29	126329907	64824369	168	1707										
FAT4	79633	broad.mit.edu;bcgsc.ca	37	chr4	126336106	126336106	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	gggcagtttactgttgacaaGaatggtgtactcaaagtcct	11	7	1	2	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	FAT4-108	NM_024582	exon5	c.G5988T	p.K1996N	TGACAAGAATGGT	.	182	15	155	1	.	0	0	0	0	0	T	126336106	G	T	126336106	3	4	9	1	0	0	0	0	1	0	0	0	5711	933	33	3	6006	3	FAT4	4	126336106	Missense_Mutation	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	6199	126336106	64818170	169	1708										
FAT4	79633	broad.mit.edu;bcgsc.ca	37	chr4	126373173	126373173	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	ttccagggggtacttgtgatCtgaattcccagccaaggtcc	11	11	1	2	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	FAT4-108	NM_024582	exon9	c.C11002A	p.L3668M	TGTGATCTGAATT	.	148	16	106	1	.	1	1	0	0	0	A	126373173	C	A	126373173	3	1	9	1	0	0	0	0	1	0	0	0	5711	912	32	3	11036	3	FAT4	4	126373173	Missense_Mutation	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	37067	126373173	64781103	170	1709										
GYPE	2996	ucsc.edu;bcgsc.ca	37	chr4	144797985	144797985	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	aaaaataacacgagccatcgCccaccaattaatgagtgtta	6	10	0	1	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	.	NM_198682	exon3	c.G160T	p.A54S	CCATCGCCCACCA	.	352	67	340	3	.	0	0	0	0	0	A	144797985	C	A	144797985	3	1	9	1	0	0	0	0	1	0	0	0	6932	739	26	3	80	3	GYPE	4	144797985	Missense_Mutation	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	18424812	144797985	46356291	171	1710										
HHIP	64399	broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr4	145628246	145628246	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	tcccacaatgtagaaaaaatCcacaccaagttgatttgaga	6	9	0	3	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	HHIP-283	NM_022475	exon6	c.C991A	p.P331T	AAAAATCCACACC	.	72	27	64	2	.	0	0	0	0	0	A	145628246	C	A	145628246	3	1	9	1	0	0	0	0	1	0	0	0	7113	855	30	3	1013	3	HHIP	4	145628246	Missense_Mutation	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	830261	145628246	45526030	172	1711										
TTC29	83894	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	147830262	147830262	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	ctcctccaggggcttctgcaGccagaagagggacctgactc	12	14	1	3	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	TTC29-90	NM_031956	exon5	c.C316A	p.L106M	TCTGCAGCCAGAA	.	53	15	55	0	.	0	0	0	0	0	T	147830262	G	T	147830262	3	4	9	1	0	0	0	0	1	0	0	0	16734	962	34	3	1147	3	TTC29	4	147830262	Missense_Mutation	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	2202016	147830262	43324014	173	1712										
PDLIM3	27295	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	186427748	186427748	+	Silent	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	aggctgtgtgggctcattccGattgtcgtggagcatccggt	15	9	1	0	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	PDLIM3-92	NM_014476	exon6	c.C721A	p.R241R	CATTCCGATTGTC	.	61	13	47	0	.	7	7	0	0	0	T	186427748	G	T	186427748	2	4	9	1	0	0	0	0	0	0	0	1	11710	1057	37	2		2	PDLIM3	4	186427748	Silent	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	38597486	186427748	4726528	174	1713										
FAT1	2195	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	187534440	187534440	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	tccatctgtggccctgacgaGaagatgataaacagcttgct	10	10	1	4	rs200812915	alternate_allele	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	FAT1-34	NM_005245	exon13	c.C9286A	p.L3096I	TGACGAGAAGATG	.	109	37	97	0	G|0.999;C|0.000	10	5	5	0	0	T	187534440	G	T	187534440	3	4	9	1	0	0	0	0	1	0	0	0	5708	942	33	3	4540	3	FAT1	4	187534440	Missense_Mutation	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	1106692	187534440	3619836	175	1714										
FAT1	2195	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	187629193	187629193	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	ctgtaccaactgaagttcatCtgcatcaatagcagaaacag	7	10	3	2	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	FAT1-34	NM_005245	exon2	c.G1789T	p.D597Y	GTTCATCTGCATC	.	43	27	42	0	.	0	0	0	0	0	A	187629193	C	A	187629193	3	1	9	1	0	0	0	0	1	0	0	0	5708	913	32	3	12081	3	FAT1	4	187629193	Missense_Mutation	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	94753	187629193	3525083	176	1715										
SLC9A3	6550	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	480044	480044	+	Silent	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	tgggccgaccgtctcatgagGaccctgctgaggaacttcct	12	13	1	2	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	SLC9A3-90	NM_004174	exon10	c.C1554A	p.V518V	CATGAGGACCCTG	.	124	15	80	0	.	25	20	5	0	0	T	480044	G	T	480044	2	4	9	1	0	0	0	0	0	0	0	1	14748	1161	41	3		3	SLC9A3	5	480044	Silent	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10		480044	180435216	177	1716										
SRD5A1	6715	hgsc.bcm.edu	37	chr5	6633779	6633779	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	ggctgcgcggtcttcgcgcgCaatcgtcagacgaactcagt	13	13	3	1	rs248793	byfrequency	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	SRD5A1-90	NM_001047	exon1	c.C90G	p.R30R	CGCGCGCAATCGT	.	9	9	0	0	C|0.454;G|0.546	2	0	2	0	0	G	6633779	C	G	6633779	2	3	9	1	0	0	0	0	0	0	0	1	15175	697	25	3		3	SRD5A1	5	6633779	Silent	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	6153735	6633779	174281481	178	1717										
CCT5	22948	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	10258587	10258587	+	Silent	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	aagctggatgtgacctctgtCgaagattataaagcccttca	9	9	2	2	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	CCT5-92	NM_012073	exon6	c.C813A	p.V271V	CTCTGTCGAAGAT	.	244	34	206	0	.	160	125	35	0	0	A	10258587	C	A	10258587	2	1	9	1	0	0	0	0	0	0	0	1	2962	871	31	2		2	CCT5	5	10258587	Silent	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	3624808	10258587	170656673	179	1718										
CDH18	1016	ucsc.edu;bcgsc.ca	37	chr5	19721543	19721543	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	tccataggtagggtcatctgCatcagtagctgtcacctgta	10	10	4	0	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	CDH18-159	NM_001167667	exon5	c.G556T	p.A186S	CATCTGCATCAGT	.	307	39	287	2	.	1	1	0	0	0	A	19721543	C	A	19721543	3	1	9	1	0	0	0	0	1	0	0	0	3109	710	25	3	1852	3	CDH18	5	19721543	Missense_Mutation	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	9462956	19721543	161193717	180	1719										
PDZD2	23037	ucsc.edu;bcgsc.ca	37	chr5	32088697	32088697	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	acagtccgctgtctaaagtaGccaggcattttcacagtccg	9	12	2	0	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	PDZD2-563	NM_178140	exon19	c.G5143T	p.A1715S	AAAGTAGCCAGGC	.	187	52	191	2	.	1	1	0	0	0	T	32088697	G	T	32088697	3	4	9	1	0	0	0	0	1	0	0	0	11730	971	34	3	5217	3	PDZD2	5	32088697	Missense_Mutation	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	12367154	32088697	148826563	181	1720										
RICTOR	253260	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	38966809	38966809	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	tgatcatcactgtttgttatCacttcaactagaccctttga	5	10	4	3	rs149142099	byfrequency;alternate_allele	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	RICTOR-849	NM_152756	exon15	c.G1233T	p.V411V	TGTTATCACTTCA	.	170	17	102	0	C|1.000;T|0.000	1	0	1	0	0	A	38966809	C	A	38966809	2	1	9	1	0	0	0	0	0	0	0	1	13393	813	29	3		3	RICTOR	5	38966809	Silent	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	6878112	38966809	141948451	182	1721										
SKIV2L2	23517	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	54619984	54619984	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	gcagacctgatgcccagagtCaaggtacaatcagttgaaac	10	10	2	4	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	SKIV2L2-92	NM_015360	exon3	c.C297A	p.V99V	CAGAGTCAAGGTA	.	167	49	168	1	.	8	6	2	0	0	A	54619984	C	A	54619984	2	1	9	1	0	0	0	0	0	0	0	1	14395	813	29	3		3	SKIV2L2	5	54619984	Silent	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	15653175	54619984	126295276	183	1722										
KIF2A	3796	bcgsc.ca	37	chr5	61673487	61673487	+	Splice_Site	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	cttaactatttttattttaaGgaagaagaagtctctccaca	5	7	1	2	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	KIF2A-228	NM_001098511	exon19	c.1912-1G>T	.	TTTTAAGGAAGAA	.	191	17	140	2	.	0	0	0	0	0	T	61673487	G	T	61673487	5	4	9	1	0	0	0	0	0	0	1	0	8318	1014	35	3	1985	3	KIF2A	5	61673487	Splice_Site	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	7053503	61673487	119241773	184	1723										
CRHBP	1393	ucsc.edu;bcgsc.ca	37	chr5	76264679	76264679	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	ggaaaacccaaatggaaacaGtatcggggaattctgtttgt	11	6	1	0	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	CRHBP-90	NM_001882	exon7	c.G938T	p.S313I	GAAACAGTATCGG	.	197	54	197	3	.	1	1	0	0	0	T	76264679	G	T	76264679	3	4	9	1	0	0	0	0	1	0	0	0	3876	1029	36	3	964	3	CRHBP	5	76264679	Missense_Mutation	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	14591192	76264679	104650581	185	1724										
MSH3	4437	hgsc.bcm.edu	37	chr5	79950715	79950715	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	gcgctgcagcggctgcagcgGccgcagcggccgcagcgccc	17	18	0	0	rs144776112		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	MSH3-661	NM_002439	exon1	c.G169C	p.A57P	GCAGCGGCCGCAG	.	23	11	10	0	G|0.834;C|0.166	1	1	0	0	0	C	79950715	G	C	79950715	3	2	9	1	0	0	0	0	1	0	0	0	9899	1203	42	3	171	3	MSH3	5	79950715	Missense_Mutation	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	3686036	79950715	100964545	186	1725										
GPR98	84059	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	89923239	89923239	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	caacaatggaaatctgattgGatctgatgaatatgaggttt	10	4	2	4	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	GPR98-103	NM_032119	exon7	c.G884T	p.G295V	TGATTGGATCTGA	.	168	23	173	0	.	0	0	0	0	0	T	89923239	G	T	89923239	3	4	9	1	0	0	0	0	1	0	0	0	6742	1174	41	3	910	3	GPR98	5	89923239	Missense_Mutation	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	9972524	89923239	90992021	187	1726										
GPR98	84059	broad.mit.edu	37	chr5	90106472	90106472	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	ggataatgatgacctggcagGaatggatatttccttccccg	11	9	0	2	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	GPR98-103	NM_032119	exon74	c.G15395T	p.G5132V	TGGCAGGAATGGA	.	86	4	72	0	.	0	0	0	0	0	T	90106472	G	T	90106472	3	4	9	1	0	0	0	0	1	0	0	0	6742	1174	41	3	15689	3	GPR98	5	90106472	Missense_Mutation	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	183233	90106472	90808788	188	1727										
SPATA9	83890	ucsc.edu;bcgsc.ca	37	chr5	95018528	95018528	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	aaagttcttcaacacctgccCacatatccacccaacaggtt	4	15	2	0	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	SPATA9-90	NM_031952	exon1	c.G31T	p.G11W	CCTGCCCACATAT	.	191	34	136	2	.	0	0	0	0	0	A	95018528	C	A	95018528	3	1	9	1	0	0	0	0	1	0	0	0	15053	594	21	3	753	3	SPATA9	5	95018528	Missense_Mutation	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	4912056	95018528	85896732	189	1728										
SEMA6A	57556	broad.mit.edu;bcgsc.ca	37	chr5	115837909	115837909	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	gggaaaaggccccttacctaGcagcaatgtagagggttccg	13	10	0	1	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	SEMA6A-92	NM_020796	exon3	c.C215A	p.A72D	TACCTAGCAGCAA	.	228	11	174	1	.	0	0	0	0	0	T	115837909	G	T	115837909	3	4	9	1	0	0	0	0	1	0	0	0	14074	971	34	3	2945	3	SEMA6A	5	115837909	Missense_Mutation	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	20819381	115837909	65077351	190	1729										
CCNI2	645121	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	132087879	132087879	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	cctatatctgatctgctaaaGaaagcacaggtagacatcaa	7	9	3	3	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	CCNI2-68	NM_001039780	exon5	c.G996T	p.K332N	GCTAAAGAAAGCA	.	157	18	111	0	.	0	0	0	0	0	T	132087879	G	T	132087879	3	4	9	1	0	0	0	0	1	0	0	0	2933	933	33	3	1014	3	CCNI2	5	132087879	Missense_Mutation	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	16249970	132087879	48827381	191	1730										
SEPT8	23176	hgsc.bcm.edu;bcgsc.ca	37	chr5	132097158	132097158	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	tcaggctgtcacctgaagggCtggctgtcaccatcgctgtc	12	13	3	1	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	SEPT8-70	NM_015146	exon7	c.G954T	p.Q318H	GAAGGGCTGGCTG	.	60	6	48	0	.	0	0	0	0	0	A	132097158	C	A	132097158	3	1	9	1	0	0	0	0	1	0	0	0	14105	796	28	3	568	3	SEPT8	5	132097158	Missense_Mutation	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	9279	132097158	48818102	192	1731										
AFF4	27125	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr5	132272803	132272803	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	aggagagctaggtgggaaggCgtcttcgccctgctgaattt	15	8	1	2	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	AFF4-229	NM_014423	exon2	c.G79A	p.A27T	GGAAGGCGTCTTC	.	150	10	129	0	.	3	3	0	0	0	T	132272803	C	T	132272803	3	4	9	1	0	0	0	0	1	0	0	0	359	768	27	1	3492	1	AFF4	5	132272803	Missense_Mutation	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	175645	132272803	48642457	193	1732										
PCDHA6	56142	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr5	140207893	140207893	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	tggcctccaaagaccgcgagGaccttctggaggtaaatctg	12	11	2	1	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	PCDHA6-92	NM_031849	exon1	c.G217T	p.D73Y	CGCGAGGACCTTC	.	162	12	114	0	.	1	1	0	0	0	T	140207893	G	T	140207893	3	4	9	1	0	0	0	0	1	0	0	0	11557	1174	41	3	219	3	PCDHA6	5	140207893	Missense_Mutation	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	7935090	140207893	40707367	194	1733										
PCDHB13	56123	ucsc.edu	37	chr5	140594815	140594815	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	cacttttcagtgtttcagatCttgattcaggagaaaatggg	10	6	4	3	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	PCDHB13-93	NM_018933	exon1	c.C1120A	p.L374I	TCAGATCTTGATT	.	241	51	187	5	.	8	4	4	0	0	A	140594815	C	A	140594815	3	1	9	1	0	0	0	0	1	0	0	0	11567	913	32	3	1122	3	PCDHB13	5	140594815	Missense_Mutation	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	386922	140594815	40320445	195	1734										
PCDHGA7	56108	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	140763290	140763290	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	cctggacgagggagtcaatgGggaagtgacatattcttttc	13	7	2	1	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	.	NM_032087	exon1	c.G824T	p.G275V	TCAATGGGGAAGT	.	182	44	127	2	.	0	0	0	0	0	T	140763290	G	T	140763290	3	4	9	1	0	0	0	0	1	0	0	0	11588	1232	43	3	826	3	PCDHGA7	5	140763290	Missense_Mutation	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	168475	140763290	40151970	196	1735										
ARHGAP26	23092	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	142264925	142264925	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	ggcatcttagaaaaacacttGaatttgtcttccaaaaagaa	6	7	2	3	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	ARHGAP26-660	NM_015071	exon5	c.G447T	p.L149F	ACACTTGAATTTG	.	296	75	239	0	.	0	0	0	0	0	T	142264925	G	T	142264925	3	4	9	1	0	0	0	0	1	0	0	0	875	1281	45	3	465	3	ARHGAP26	5	142264925	Missense_Mutation	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	1501635	142264925	38650335	197	1736										
ITK	3702	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	156671402	156671402	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	gcacccagcggggactttttGctgcagagaccctgctgggc	14	13	0	1	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	ITK-1427	NM_005546	exon13	c.G1363T	p.A455S	CTTTTTGCTGCAG	.	123	43	149	1	.	0	0	0	0	0	T	156671402	G	T	156671402	3	4	9	1	0	0	0	0	1	0	0	0	7930	1319	46	3	1413	3	ITK	5	156671402	Missense_Mutation	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	14406477	156671402	24243858	198	1737										
CYFIP2	26999	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	156753261	156753261	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	aaaagcagttcctgtacgatGagatagaagctgaggcaagt	12	6	0	3	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	CYFIP2-22	NM_001037332	exon18	c.G2065T	p.E689X	TACGATGAGATAG	.	129	21	153	1	.	4	4	0	0	0	T	156753261	G	T	156753261	4	4	9	1	0	0	0	0	0	1	0	0	4144	1291	45	3	2131	3	CYFIP2	5	156753261	Nonsense_Mutation	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	81859	156753261	24161999	199	1738										
IL12B	3593	bcgsc.ca	37	chr5	158750252	158750252	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	ctctggtccaaggtccaggtGataccatcttcttcaggggt	11	11	4	1	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	IL12B-90	NM_002187	exon3	c.C174A	p.I58I	CCAGGTGATACCA	.	148	43	142	3	.	0	0	0	0	0	T	158750252	G	T	158750252	2	4	9	1	0	0	0	0	0	0	0	1	7646	1280	45	3		3	IL12B	5	158750252	Silent	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	1996991	158750252	22165008	200	1739										
RANBP17	64901	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	170668124	170668124	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	ttttgtcaaaatgctgctgtCagtgtcccacagtgacttgc	9	10	2	1	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	RANBP17-524	NM_022897	exon23	c.C2615A	p.S872X	TGCTGTCAGTGTC	.	110	29	84	0	.	6	6	0	0	0	A	170668124	C	A	170668124	4	1	9	1	0	0	0	0	0	1	0	0	13062	838	29	3	2705	3	RANBP17	5	170668124	Nonsense_Mutation	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	11917872	170668124	10247136	201	1740										
ARL10	285598	hgsc.bcm.edu	37	chr5	175792605	175792605	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	ggccccttggtgctggcgctGggcggcgccgcggcggtgct	20	14	0	0	rs2303667		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	ARL10-91	NM_173664	exon1	c.G39C	p.L13L	GGCGCTGGGCGGC	.	9	9	0	0	G|0.585;C|0.415	0	0	0	0	0	C	175792605	G	C	175792605	2	2	9	1	0	0	0	0	0	0	0	1	926	1335	47	3		3	ARL10	5	175792605	Silent	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	5124481	175792605	5122655	202	1741										
COL23A1	91522	broad.mit.edu;ucsc.edu	37	chr5	177690260	177690260	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	ttcccagtgtcgccaggaggGccccgggccccaggaggtcc	15	16	0	0	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	COL23A1-91	NM_173465	exon9	c.C588A	p.G196G	AGGAGGGCCCCGG	.	78	13	48	1	.	0	0	0	0	0	T	177690260	G	T	177690260	2	4	9	1	0	0	0	0	0	0	0	1	3688	1190	42	3		3	COL23A1	5	177690260	Silent	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	1897655	177690260	3225000	203	1742										
BTNL3	10917	broad.mit.edu	37	chr5	180432368	180432368	+	Silent	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	gatccagagacggctcacccGaagctctgcgtttctgatct	10	13	4	2	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	.	NM_197975	exon8	c.G897T	p.P299P	TCACCCGAAGCTC	.	124	3	130	0	.	0	0	0	0	0	T	180432368	G	T	180432368	2	4	9	1	0	0	0	0	0	0	0	1	1569	1045	37	2		2	BTNL3	5	180432368	Silent	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	2742108	180432368	482892	204	1743										
BTNL9	153579	broad.mit.edu;bcgsc.ca	37	chr5	180477228	180477228	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	agtgcctgcctccagagtttGaagccatcgtctgggatgcc	12	12	1	2	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	BTNL9-91	NM_152547	exon4	c.G595T	p.E199X	GAGTTTGAAGCCA	.	170	10	180	2	.	3	3	0	0	0	T	180477228	G	T	180477228	4	4	9	1	0	0	0	0	0	1	0	0	1571	1291	45	3	605	3	BTNL9	5	180477228	Nonsense_Mutation	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	44860	180477228	438032	205	1744										
OR2V2	285659	broad.mit.edu;bcgsc.ca	37	chr5	180582781	180582781	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	ggtggcctctatcttctacaCggtccttactcccatgctca	7	15	4	0	rs200222451		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	OR2V2-69	NM_206880	exon1	c.C839T	p.T280M	TCTACACGGTCCT	.	239	12	257	1	C|0.999;T|0.000	0	0	0	0	0	T	180582781	C	T	180582781	3	4	9	1	0	0	0	0	1	0	0	0	11060	536	19	1	841	1	OR2V2	5	180582781	Missense_Mutation	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	105553	180582781	332479	206	1745										
NQO2	4835	broad.mit.edu	37	chr6	3012810	3012810	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	atcctgaggttttcaattatGgagtggaaacccacgaagcc	10	9	1	1	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	NQO2-91	NM_000904	exon4	c.G205T	p.G69X	AATTATGGAGTGG	.	220	5	193	0	.	163	162	1	0	0	T	3012810	G	T	3012810	4	4	9	1	0	0	0	0	0	1	0	0	10641	1349	47	3	215	3	NQO2	6	3012810	Nonsense_Mutation	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10		3012810	168102257	207	1746										
HIVEP1	3096	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	12121200	12121200	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	tcaaagcgtagagcaaatgtGcaatcttcttctgaaagatc	8	8	4	3	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	HIVEP1-139	NM_002114	exon4	c.G1172T	p.C391F	AAATGTGCAATCT	.	82	19	77	0	.	0	0	0	0	0	T	12121200	G	T	12121200	3	4	9	1	0	0	0	0	1	0	0	0	7207	1319	46	3	1182	3	HIVEP1	6	12121200	Missense_Mutation	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	9108390	12121200	158993867	208	1747										
HIVEP1	3096	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	12163624	12163624	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	ctgaccctcaagaacagaagCagcaaataactctacagccg	7	13	2	3	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	HIVEP1-139	NM_002114	exon9	c.C7087A	p.Q2363K	CAGAAGCAGCAAA	.	93	20	79	0	.	10	7	3	0	0	A	12163624	C	A	12163624	3	1	9	1	0	0	0	0	1	0	0	0	7207	711	25	3	7117	3	HIVEP1	6	12163624	Missense_Mutation	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	42424	12163624	158951443	209	1748										
NRSN1	140767	ucsc.edu	37	chr6	24145937	24145937	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	gctctggacatgtacaagctGgcaggagctgttctcttctg	12	10	3	0	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	NRSN1-90	NM_080723	exon4	c.G351T	p.L117L	CAAGCTGGCAGGA	.	129	14	128	3	.	0	0	0	0	0	T	24145937	G	T	24145937	2	4	9	1	0	0	0	0	0	0	0	1	10691	1335	47	3		3	NRSN1	6	24145937	Silent	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	11982313	24145937	146969130	210	1749										
OR2W1	26692	broad.mit.edu	37	chr6	29012545	29012545	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	tttagacatagatgtgggttCatgactacaaaataatgcaa	8	5	1	3	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	OR2W1-93	NM_030903	exon1	c.G408T	p.M136I	TGGGTTCATGACT	.	68	4	65	1	.	0	0	0	0	0	A	29012545	C	A	29012545	3	1	9	1	0	0	0	0	1	0	0	0	11061	826	29	3	558	3	OR2W1	6	29012545	Missense_Mutation	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	4866608	29012545	142102522	211	1750										
OR2H1	26716	ucsc.edu;bcgsc.ca	37	chr6	29429993	29429993	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	gcatctgtggcctgggttatGagtctggttcaatcgatagt	13	7	3	1	rs139057187	byfrequency;alternate_allele	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	OR2H1-90	NM_030883	exon3	c.G447T	p.M149I	GGTTATGAGTCTG	.	172	43	130	2	G|0.999;A|0.001	0	0	0	0	0	T	29429993	G	T	29429993	3	4	9	1	0	0	0	0	1	0	0	0	11030	1290	45	3	449	3	OR2H1	6	29429993	Missense_Mutation	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	417448	29429993	141685074	212	1751										
GABBR1	2550	broad.mit.edu;bcgsc.ca	37	chr6	29591685	29591685	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	accacaatgaggttccacatCctagcagcctcagccaccag	7	16	1	1	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	GABBR1-521	NM_001470	exon7	c.G774T	p.R258S	CCACATCCTAGCA	.	214	7	172	0	.	4	4	0	0	0	A	29591685	C	A	29591685	3	1	9	1	0	0	0	0	1	0	0	0	6174	854	30	3	2179	3	GABBR1	6	29591685	Missense_Mutation	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	161692	29591685	141523382	213	1752										
RNF39	80352	hgsc.bcm.edu	37	chr6	30039364	30039364	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	ctgatcgaagcgcttggggcCgtcagggggcgcgggcgtcc	19	12	1	1	rs11753382		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	RNF39-226	NM_025236	exon4	c.G787T	p.G263C	TGGGGCCGTCAGG	.	17	13	0	0	C|0.862;A|0.138	6	6	0	0	0	A	30039364	C	A	30039364	3	1	9	1	0	0	0	0	1	0	0	0	13526	652	23	2	479	2	RNF39	6	30039364	Missense_Mutation	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	447679	30039364	141075703	214	1753										
ABCF1	23	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	30552279	30552279	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	ctggcctgggctttgaccctGaaatgcagaatcgacccaca	10	13	0	3	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	ABCF1-92	NM_001025091	exon14	c.G1327T	p.E443X	GACCCTGAAATGC	.	79	9	79	0	.	36	36	0	0	0	T	30552279	G	T	30552279	4	4	9	1	0	0	0	0	0	1	0	0	65	1291	45	3	1381	3	ABCF1	6	30552279	Nonsense_Mutation	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	512915	30552279	140562788	215	1754										
EHMT2	10919	broad.mit.edu;ucsc.edu	37	chr6	31856281	31856281	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	atggcggcattgcagcctgaCagctgtgcgcagtgaggatg	16	9	0	2	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	EHMT2-91	NM_006709	exon12	c.G1368T	p.L456L	GCCTGACAGCTGT	.	119	14	68	1	.	0	0	0	0	0	A	31856281	C	A	31856281	2	1	9	1	0	0	0	0	0	0	0	1	4995	465	17	3		3	EHMT2	6	31856281	Silent	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	1304002	31856281	139258786	216	1755										
CFB	629	broad.mit.edu	37	chr6	31917321	31917321	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	gaaaacctggaagatgttttCtaccaaatgatcggtaggga	11	6	1	2	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	CFB-91	NM_001710	exon10	c.C1395A	p.F465L	TGTTTTCTACCAA	.	75	5	50	2	.	0	0	0	0	0	A	31917321	C	A	31917321	3	1	9	1	0	0	0	0	1	0	0	0	3284	912	32	3	1433	3	CFB	6	31917321	Missense_Mutation	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	61040	31917321	139197746	217	1756										
PSMB9	5698	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	32825820	32825820	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	tccacttgttttggctgctgCaaatgtggtgagaaatatca	10	7	1	1	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	PSMB9-90	NM_002800	exon4	c.C299A	p.A100E	CTGCTGCAAATGT	.	193	50	132	1	.	47	36	11	0	0	A	32825820	C	A	32825820	3	1	9	1	0	0	0	0	1	0	0	0	12716	710	25	3	313	3	PSMB9	6	32825820	Missense_Mutation	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	908499	32825820	138289247	218	1757										
ITPR3	3710	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	33630346	33630346	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	catgcggagcaggagaagttCctgacgtgtgacgagtacaa	14	8	0	3	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	ITPR3-1085	NM_002224	exon8	c.C753A	p.F251L	GAAGTTCCTGACG	.	107	50	73	1	.	1	1	0	0	0	A	33630346	C	A	33630346	3	1	9	1	0	0	0	0	1	0	0	0	7943	854	30	3	783	3	ITPR3	6	33630346	Missense_Mutation	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	804526	33630346	137484721	219	1758										
BTBD9	114781	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	38561778	38561778	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	accttcacttgagaggacttCctgagcattcctatccataa	6	12	1	2	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	BTBD9-226	NM_052893	exon4	c.G511T	p.E171X	GGACTTCCTGAGC	.	187	34	134	0	.	1	1	0	0	0	A	38561778	C	A	38561778	4	1	9	1	0	0	0	0	0	1	0	0	1551	864	30	3	1454	3	BTBD9	6	38561778	Nonsense_Mutation	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	4931432	38561778	132553289	220	1759										
DNAH8	1769	broad.mit.edu;bcgsc.ca	37	chr6	38800136	38800136	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	ctagttcaagtgcagccaaaGtttaaaagcaatctacttga	7	8	2	1	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	DNAH8-615	NM_001206927	exon31	c.G4227T	p.K1409N	GCCAAAGTTTAAA	.	222	8	173	0	.	0	0	0	0	0	T	38800136	G	T	38800136	3	4	9	1	0	0	0	0	1	0	0	0	4618	1020	36	3	3682	3	DNAH8	6	38800136	Missense_Mutation	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	238358	38800136	132314931	221	1760										
KCNK17	89822	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	39271826	39271826	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	gccctccatgtgggagaagaGcagcggtggcagcagcagga	17	10	0	2	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	KCNK17-227	NM_001135111	exon4	c.C595A	p.L199I	AGAAGAGCAGCGG	.	153	42	122	2	.	0	0	0	0	0	T	39271826	G	T	39271826	3	4	9	1	0	0	0	0	1	0	0	0	8085	971	34	3	543	3	KCNK17	6	39271826	Missense_Mutation	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	471690	39271826	131843241	222	1761										
PRPH2	5961	broad.mit.edu;ucsc.edu	37	chr6	42689604	42689604	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	gaactcgatctgcagcatgtCgatggtcttcttcatgaaac	9	10	4	1	rs61755787	alternate_allele	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	PRPH2-94	NM_000322	exon1	c.G469T	p.D157Y	GCATGTCGATGGT	.	204	21	148	2	.	0	0	0	0	0	A	42689604	C	A	42689604	3	1	9	1	0	0	0	0	1	0	0	0	12609	884	31	2	583	2	PRPH2	6	42689604	Missense_Mutation	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	3417778	42689604	128425463	223	1762										
PPP2R5D	5528	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	42957364	42957364	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	ttcaggagccccccaaggttGccaaatgcacagccaagcct	9	15	1	0	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	PPP2R5D-1082	NM_180976	exon2	c.G43T	p.A15S	AAGGTTGCCAAAT	.	81	12	57	0	.	10	8	2	0	0	T	42957364	G	T	42957364	3	4	9	1	0	0	0	0	1	0	0	0	12427	1319	46	3	49	3	PPP2R5D	6	42957364	Missense_Mutation	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	267760	42957364	128157703	224	1763										
CYP39A1	51302	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	46607338	46607338	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	tgatggagattgacagtcccCattttccctttcaacataat	6	10	1	3	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	CYP39A1-91	NM_016593	exon3	c.G381T	p.M127I	AGTCCCCATTTTC	.	121	35	109	0	.	0	0	0	0	0	A	46607338	C	A	46607338	3	1	9	1	0	0	0	0	1	0	0	0	4183	594	21	3	1068	3	CYP39A1	6	46607338	Missense_Mutation	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	3649974	46607338	124507729	225	1764										
OPN5	221391	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	47754293	47754293	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	tggatatgtcctttacatgtCttctagacgaaagaagaagc	9	7	2	3	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	OPN5-69	NM_181744	exon2	c.C173A	p.S58Y	ACATGTCTTCTAG	.	119	15	98	0	.	0	0	0	0	0	A	47754293	C	A	47754293	3	1	9	1	0	0	0	0	1	0	0	0	10912	913	32	3	179	3	OPN5	6	47754293	Missense_Mutation	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	1146955	47754293	123360774	226	1765										
PKHD1	5314	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	51612798	51612798	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	aaaagaagagctggtggccaCaatgactgaattcctaagca	10	8	0	4	rs141507554		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	PKHD1-603	NM_170724	exon58	c.G9616T	p.V3206L	TGGCCACAATGAC	.	178	22	127	0	C|1.000;A|0.000	0	0	0	0	0	A	51612798	C	A	51612798	3	1	9	1	0	0	0	0	1	0	0	0	12000	478	17	3	2687	3	PKHD1	6	51612798	Missense_Mutation	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	3858505	51612798	119502269	227	1766										
ELOVL5	60481	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	53139932	53139932	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	tcacaaaccaccagatgttcAgcatcgaggcatggtggtag	11	10	2	1	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	ELOVL5-90	NM_001242828	exon6	c.T533A	p.L178Q	ATGTTCAGCATCG	.	234	32	187	2	.	92	82	10	0	0	T	53139932	A	T	53139932	3	4	9	1	0	0	0	0	1	0	0	0	5090	188	7	5	463	5	ELOVL5	6	53139932	Missense_Mutation	SNP	A	TCGA-OR-A5JA-01A-11D-A29I-10	1527134	53139932	117975135	228	1767										
TINAG	27283	bcgsc.ca;mdanderson.org	37	chr6	54172881	54172881	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	ctcatgagagcctggatgttCgtttcaatgcaggcaggtga	13	8	2	2	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	TINAG-93	.	.	.	.	GATGTTCGTTTCA	.	101	24	78	0	.	0	0	0	0	0	A	54172881	C	A	54172881	3	1	9	1	0	0	0	0	1	0	0	0	15958	899	31	2		2	TINAG	6	54172881	Missense_Mutation	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	1032949	54172881	116942186	229	1768										
FAM83B	222584	broad.mit.edu;bcgsc.ca	37	chr6	54805222	54805222	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	aacaacgaatgccaacccttGaacataccacaaagtcattc	4	13	1	1	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	FAM83B-96	NM_001010872	exon5	c.G1453T	p.E485X	ACCCTTGAACATA	.	57	13	60	1	.	0	0	0	0	0	T	54805222	G	T	54805222	4	4	9	1	0	0	0	0	0	1	0	0	5653	1291	45	3	1467	3	FAM83B	6	54805222	Nonsense_Mutation	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	632341	54805222	116309845	230	1769										
COL21A1	81578	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	56033011	56033011	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	tggatgtaagggcttgttttCaatttgttggtcatcaatat	10	4	3	0	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	COL21A1-24	NM_030820	exon6	c.G1111T	p.E371X	TGTTTTCAATTTG	.	78	12	58	0	.	0	0	0	0	0	A	56033011	C	A	56033011	4	1	9	1	0	0	0	0	0	1	0	0	3686	835	29	3	1862	3	COL21A1	6	56033011	Nonsense_Mutation	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	1227789	56033011	115082056	231	1770										
LGSN	51557	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	63991038	63991038	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	gtcgctattaaaacatgtggCtcttatgttattcatttcat	6	7	3	0	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	LGSN-227	NM_016571	exon4	c.G418T	p.A140S	ATGTGGCTCTTAT	.	126	42	111	0	.	0	0	0	0	0	A	63991038	C	A	63991038	3	1	9	1	0	0	0	0	1	0	0	0	8782	797	28	3	1115	3	LGSN	6	63991038	Missense_Mutation	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	7958027	63991038	107124029	232	1771										
EYS	346007	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	65301109	65301109	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	tgcacatgtttggcttaattCtcttaaagaatcagcagcct	7	9	2	1	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	EYS-660	NM_001142800	exon26	c.G4651T	p.E1551X	TTAATTCTCTTAA	.	117	19	85	0	.	0	0	0	0	0	A	65301109	C	A	65301109	4	1	9	1	0	0	0	0	0	1	0	0	5345	922	32	3	4700	3	EYS	6	65301109	Nonsense_Mutation	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	1310071	65301109	105813958	233	1772										
COL19A1	1310	bcgsc.ca	37	chr6	70916977	70916977	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	tcagcgcacaggtgggaattGaacacacctgaagaagactt	11	9	1	4	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	COL19A1-156	NM_001858	exon51	c.G3428T	p.X1143L	GGAATTGAACACA	.	50	13	39	1	.	0	0	0	0	0	T	70916977	G	T	70916977	3	4	9	1	0	0	0	0	1	0	0	0	3682	1285	45	3	3626	3	COL19A1	6	70916977	Missense_Mutation	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	5615868	70916977	100198090	234	1773										
PRSS35	167681	broad.mit.edu	37	chr6	84234143	84234143	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	ctatcggttttgcagtgtgtCcgacgaatccaatgatctcc	9	11	1	1	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	PRSS35-91	NM_153362	exon2	c.C983A	p.S328Y	GTGTGTCCGACGA	.	99	20	96	2	.	0	0	0	0	0	A	84234143	C	A	84234143	3	1	9	1	0	0	0	0	1	0	0	0	12656	855	30	3	985	3	PRSS35	6	84234143	Missense_Mutation	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	13317166	84234143	86880924	235	1774										
SNAP91	9892	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	84292059	84292059	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	ggagatggggaaggcgccatGaaagaacccccaaatcctga	13	10	0	4	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	SNAP91-23	NM_001242792	exon22	c.C2031A	p.F677L	CGCCATGAAAGAA	.	47	12	59	0	.	1	0	1	0	0	T	84292059	G	T	84292059	3	4	9	1	0	0	0	0	1	0	0	0	14868	1281	45	3	720	3	SNAP91	6	84292059	Missense_Mutation	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	57916	84292059	86823008	236	1775										
NT5E	4907	ucsc.edu;bcgsc.ca	37	chr6	86181104	86181104	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	agaaagtgaggggtgtggacGtcgtggtgggaggacactcc	19	6	0	2	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	NT5E-93	NM_001204813	exon3	c.G712A	p.V238I	GTGGACGTCGTGG	.	158	14	148	2	.	3	2	1	0	0	A	86181104	G	A	86181104	3	1	9	1	0	0	0	0	1	0	0	0	10722	1145	40	1	722	1	NT5E	6	86181104	Missense_Mutation	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	1889045	86181104	84933963	237	1776										
NT5E	4907	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	86195053	86195053	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	gtccaggcctatgcttttggCaaatacctaggctatctgaa	9	10	1	1	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	NT5E-93	NM_001204813	exon4	c.C852A	p.G284G	TTTTGGCAAATAC	.	186	43	139	1	.	2	1	1	0	0	A	86195053	C	A	86195053	2	1	9	1	0	0	0	0	0	0	0	1	10722	697	25	3		3	NT5E	6	86195053	Silent	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	13949	86195053	84920014	238	1777										
POU3F2	5454	hgsc.bcm.edu	37	chr6	99283376	99283376	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	gccggcgggcagccggccggTctgcaccaccacggcctgcg	16	18	1	0	rs195860		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	POU3F2-90	NM_005604	exon1	c.T627G	p.G209G	GGCCGGTCTGCAC	.	8	8	0	0	T|0.089;G|0.911	0	0	0	0	0	G	99283376	T	G	99283376	2	3	9	1	0	0	0	0	0	0	0	1	12304	1654	58	5		5	POU3F2	6	99283376	Silent	SNP	T	TCGA-OR-A5JA-01A-11D-A29I-10	13088323	99283376	71831691	239	1778										
USP45	85015	bcgsc.ca	37	chr6	99956553	99956553	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	gctgcccatcatagaatcttCtttcttttaaacattctgag	5	10	5	2	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	USP45-637	NM_001080481	exon3	c.G206T	p.R69I	AATCTTCTTTCTT	.	75	24	98	3	.	3	3	0	0	0	A	99956553	C	A	99956553	3	1	9	1	0	0	0	0	1	0	0	0	17114	913	32	3	2302	3	USP45	6	99956553	Missense_Mutation	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	673177	99956553	71158514	240	1779										
SIM1	6492	hgsc.bcm.edu;bcgsc.ca	37	chr6	100898139	100898139	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	gggatatgtgaaccactcacCtacctgagaaagacccaagt	9	11	1	3	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	SIM1-94	NM_005068	exon3	c.G352T	p.E118X	ACTCACCTACCTG	.	84	7	59	0	.	0	0	0	0	0	A	100898139	C	A	100898139	4	1	9	1	0	0	0	0	0	1	0	0	14358	695	24	3	1984	3	SIM1	6	100898139	Nonsense_Mutation	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	941586	100898139	70216928	241	1780										
GRIK2	2898	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	102503296	102503296	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	aaggagaaatggtggaggggCaatggttgcccagaagagga	18	4	0	3	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	GRIK2-157	NM_021956	exon15	c.C2403A	p.G801G	GAGGGGCAATGGT	.	145	45	94	0	.	0	0	0	0	0	A	102503296	C	A	102503296	2	1	9	1	0	0	0	0	0	0	0	1	6795	697	25	3		3	GRIK2	6	102503296	Silent	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	1605157	102503296	68611771	242	1781										
AIM1	202	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	106975232	106975232	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	ggcactccatccccttagaaGaaggagaattggaactctct	9	11	1	3	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	AIM1-139	NM_001624	exon5	c.G3241T	p.E1081X	TTAGAAGAAGGAG	.	238	27	185	1	.	0	0	0	0	0	T	106975232	G	T	106975232	4	4	9	1	0	0	0	0	0	1	0	0	430	943	33	3	3259	3	AIM1	6	106975232	Nonsense_Mutation	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	4471936	106975232	64139835	243	1782										
AKD1	221264	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	109850273	109850273	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	ccttcttttagcaatcgtatCaacctgttaaagaaagagac	6	9	2	2	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	AKD1-91	NM_001145128	exon29	c.G3574T	p.D1192Y	TCGTATCAACCTG	.	24	6	19	0	.	0	0	0	0	0	A	109850273	C	A	109850273	3	1	9	1	0	0	0	0	1	0	0	0	460	826	29	3	2213	3	AKD1	6	109850273	Missense_Mutation	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	2875041	109850273	61264794	244	1783										
FIG4	9896	broad.mit.edu	37	chr6	110112598	110112598	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	gaaacaaaagcaatagagaaGaagctgtattacagcggaaa	10	5	0	2	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	FIG4-69	NM_014845	exon20	c.G2200T	p.E734X	AGAGAAGAAGCTG	.	43	4	35	0	.	7	7	0	0	0	T	110112598	G	T	110112598	4	4	9	1	0	0	0	0	0	1	0	0	5907	943	33	3	2278	3	FIG4	6	110112598	Nonsense_Mutation	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	262325	110112598	61002469	245	1784										
GOPC	57120	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	117923266	117923266	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	ttctgtcgcccctcataagtGatgtccgcttggtctggatc	10	12	3	1	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	GOPC-676	NM_001017408	exon1	c.C186A	p.I62I	ATAAGTGATGTCC	.	114	20	95	0	.	3	3	0	0	0	T	117923266	G	T	117923266	2	4	9	1	0	0	0	0	0	0	0	1	6593	1280	45	3		3	GOPC	6	117923266	Silent	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	7810668	117923266	53191801	246	1785										
FAM184A	79632	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	119285913	119285913	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	gtttctcgattgactaattcCagctgataaaacttattatc	5	8	1	2	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	FAM184A-519	NM_024581	exon16	c.G3057T	p.L1019L	TAATTCCAGCTGA	.	66	12	62	0	.	1	1	0	0	0	A	119285913	C	A	119285913	2	1	9	1	0	0	0	0	0	0	0	1	5527	581	21	3		3	FAM184A	6	119285913	Silent	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	1362647	119285913	51829154	247	1786										
GJA1	2697	ucsc.edu	37	chr6	121768481	121768481	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	catcagtatcctcttcaagtCtatctttgaggtggccttct	7	11	6	1	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	GJA1-92	NM_000165	exon2	c.C488A	p.S163Y	TCAAGTCTATCTT	.	247	42	205	4	.	55	51	4	0	0	A	121768481	C	A	121768481	3	1	9	1	0	0	0	0	1	0	0	0	6420	913	32	3	490	3	GJA1	6	121768481	Missense_Mutation	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	2482568	121768481	49346586	248	1787										
NCOA7	135112	broad.mit.edu	37	chr6	126210486	126210486	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	ttcttctcaaactggtggtgGaatgcacaaaaaagacacct	8	9	2	1	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	NCOA7-227	NM_001199619	exon10	c.G1286T	p.G429V	GTGGTGGAATGCA	.	87	23	65	2	.	2	2	0	0	0	T	126210486	G	T	126210486	3	4	9	1	0	0	0	0	1	0	0	0	10263	1174	41	3	1316	3	NCOA7	6	126210486	Missense_Mutation	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	4442005	126210486	44904581	249	1788										
MED23	9439	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	131927695	131927695	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	ttgagcttttctattgagatGaatccaaatacaggtcattg	8	6	2	3	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	MED23-24	NM_015979	exon14	c.C1309A	p.H437N	TGAGATGAATCCA	.	166	33	160	0	.	5	1	4	0	0	T	131927695	G	T	131927695	3	4	9	1	0	0	0	0	1	0	0	0	9469	1290	45	3	2890	3	MED23	6	131927695	Missense_Mutation	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	5717209	131927695	39187372	250	1789										
TAAR5	9038	bcgsc.ca	37	chr6	132910431	132910431	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	ggtcacagatggcacagtggCggtcaatggaaatgaaacag	14	7	2	2	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	TAAR5-91	NM_003967	exon1	c.G395T	p.R132L	CAGTGGCGGTCAA	.	291	14	231	2	.	0	0	0	0	0	A	132910431	C	A	132910431	3	1	9	1	0	0	0	0	1	0	0	0	15528	768	27	2	622	2	TAAR5	6	132910431	Missense_Mutation	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	982736	132910431	38204636	251	1790										
MYB	4602	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr6	135513461	135513461	+	Splice_Site	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	gtgtgatatatttctgtgcaGaactgataatgctatcaaga	9	5	2	4	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	MYB-838	NM_001161660	exon6	c.528-1G>T	.	TGTGCAGAACTGA	.	83	8	56	0	.	0	0	0	0	0	T	135513461	G	T	135513461	5	4	9	1	0	0	0	0	0	0	1	0	10035	956	33	3	549	3	MYB	6	135513461	Splice_Site	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	2603030	135513461	35601606	252	1791										
MYB	4602	bcgsc.ca	37	chr6	135517036	135517036	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	atcctggctccctacctgaaGaaagcgcctcgccagcaagg	10	15	0	2	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	MYB-838	NM_001161659	exon9	c.G1099T	p.E367X	CCTGAAGAAAGCG	.	136	72	103	3	.	0	0	0	0	0	T	135517036	G	T	135517036	4	4	9	1	0	0	0	0	0	1	0	0	10035	943	33	3	1133	3	MYB	6	135517036	Nonsense_Mutation	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	3575	135517036	35598031	253	1792										
HECA	51696	broad.mit.edu	37	chr6	139487898	139487898	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	ttccatggaccggcagaactCccaggagaaggcagtgggtg	15	10	0	2	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	HECA-90	NM_016217	exon2	c.C749A	p.S250Y	AGAACTCCCAGGA	.	116	13	65	2	.	0	0	0	0	0	A	139487898	C	A	139487898	3	1	9	1	0	0	0	0	1	0	0	0	7059	855	30	3	755	3	HECA	6	139487898	Missense_Mutation	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	3970862	139487898	31627169	254	1793										
HIVEP2	3097	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	143094923	143094923	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	ccttcattggacctcccaatGattcttccaatgacccatga	5	14	2	3	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	HIVEP2-95	NM_006734	exon5	c.C953A	p.S318X	CCCAATGATTCTT	.	65	14	41	1	.	0	0	0	0	0	T	143094923	G	T	143094923	4	4	9	1	0	0	0	0	0	1	0	0	7208	1294	45	3	6411	3	HIVEP2	6	143094923	Nonsense_Mutation	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	3607025	143094923	28020144	255	1794										
GRM1	2911	broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr6	146708064	146708064	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	gtgagctgctgctggatttgCacggcctgcaaagagaatga	14	8	0	3	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	GRM1-1080	NM_000838	exon7	c.C1641A	p.C547X	GATTTGCACGGCC	.	109	26	91	2	.	0	0	0	0	0	A	146708064	C	A	146708064	4	1	9	1	0	0	0	0	0	1	0	0	6817	718	25	3	1663	3	GRM1	6	146708064	Nonsense_Mutation	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	3613141	146708064	24407003	256	1795										
GRM1	2911	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	146708146	146708146	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	gatggtggcccaatgcagatCtaacaggtaggaactgcctc	12	10	1	1	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	GRM1-1080	NM_000838	exon7	c.C1723A	p.L575I	GCAGATCTAACAG	.	121	35	91	1	.	0	0	0	0	0	A	146708146	C	A	146708146	3	1	9	1	0	0	0	0	1	0	0	0	6817	912	32	3	1745	3	GRM1	6	146708146	Missense_Mutation	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	82	146708146	24406921	257	1796										
ZC3H12D	340152	hgsc.bcm.edu	37	chr6	149772190	149772190	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	gagctgcaggccgggcggagGcgggaggtcgcccggggaga	23	10	0	1	rs112722576		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	.	NM_207360	exon6	c.C1213T	p.P405S	GCGGAGGCGGGAG	.	21	12	1	0	G|0.668;A|0.332	0	0	0	0	0	A	149772190	G	A	149772190	3	1	9	1	0	0	0	0	1	0	0	0	17601	1203	42	3	374	3	ZC3H12D	6	149772190	Missense_Mutation	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	3064044	149772190	21342877	258	1797										
PLEKHG1	57480	broad.mit.edu	37	chr6	151055067	151055067	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	agaacgcggatgagggcagcGaaaggccacccagagcgcag	16	11	0	3	rs199980034		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	PLEKHG1-92	NM_001029884	exon3	c.G250A	p.E84K	GGCAGCGAAAGGC	.	122	15	86	2	G|0.999;A|0.001	0	0	0	0	0	A	151055067	G	A	151055067	3	1	9	1	0	0	0	0	1	0	0	0	12097	1059	37	1	252	1	PLEKHG1	6	151055067	Missense_Mutation	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	1282877	151055067	20060000	259	1798										
AKAP12	9590	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	151647016	151647016	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	atgctggggaccatcaccatCacaggtaaggcacaagccag	11	12	2	0	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	AKAP12-293	NM_144497	exon1	c.C21A	p.I7I	CACCATCACAGGT	.	70	12	50	0	.	0	0	0	0	0	A	151647016	C	A	151647016	2	1	9	1	0	0	0	0	0	0	0	1	448	816	29	3		3	AKAP12	6	151647016	Silent	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	591949	151647016	19468051	260	1799										
SYNE1	23345	broad.mit.edu	37	chr6	152551838	152551838	+	Splice_Site	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	aagccttccaacagctggatCtgaacaaacacaataaaatg	6	10	1	1	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	SYNE1-607	NM_033071	exon115	c.20827-1G>T	.	CTGGATCTGAACA	.	50	8	48	2	.	0	0	0	0	0	A	152551838	C	A	152551838	5	1	9	1	0	0	0	0	0	0	1	0	15482	927	32	3	5555	3	SYNE1	6	152551838	Splice_Site	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	904822	152551838	18563229	261	1800										
TIAM2	26230	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	155566830	155566830	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	actgtacagtggattctgtgCtaaccatatcaaagtacaga	8	8	2	1	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	TIAM2-93	NM_012454	exon18	c.C3617A	p.A1206D	TCTGTGCTAACCA	.	70	16	46	0	.	8	5	3	0	0	A	155566830	C	A	155566830	3	1	9	1	0	0	0	0	1	0	0	0	15928	797	28	3	3679	3	TIAM2	6	155566830	Missense_Mutation	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	3014992	155566830	15548237	262	1801										
SLC22A2	6582	hgsc.bcm.edu	37	chr6	160663410	160663410	+	Missense_Mutation	SNP	A	A	G													0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	ccattcttcccaagcatgagAtaataatttttagccattgt					novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	SLC22A2-154	NM_003058	exon8	c.T1304C	p.I435T	CATGAGATAATAA	.	114	14	124	0	.	0	0	0	0	0	G	160663410	A	G	160663410	3	3	9	1	0	0	0	0	1	0	0	0	14485	333	12	4	379	4	SLC22A2	6	160663410	Missense_Mutation	SNP	A	TCGA-OR-A5JA-01A-11D-A29I-10	5096580	160663410	10451657	263	1802	17	3								
SLC22A2	6582	hgsc.bcm.edu	37	chr6	160663414	160663438	+	In_Frame_Del	DEL	TAATTTTTAGCCATTGTAGATCTAA	TAATTTTTAGCCATTGTAGATCTAA	-													0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	tcttcccaagcatgagataaTaatttttagccattgtagat					novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	TAATTTTTAGCCATTGTAGATCTAA	TAATTTTTAGCCATTGTAGATCTAA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	SLC22A2-154	NM_003058	exon8	c.1280_1300del	p.427_434del	AGATAATAATTTT	.	106	0	113	0	.	0	0	0	0	0	-	160663438	TAATTTTTAGCCATTGTAGATCTAA	-	160663414	7	5	9	1	0	1	0	1	0	0	0	0	14485	1406	49	0	383	0	SLC22A2	6	160663414	In_Frame_Del	DEL	TAATTTTTAGCCATTGTAGATCTAA	TCGA-OR-A5JA-01A-11D-A29I-10	4	160663414	10451653	264	1803	17	3								
SLC22A2	6582	bcgsc.ca	37	chr6	160663424	160663435	+	Frame_Shift_Del	DEL	CCATTGTAGATC	CCATTGTAGATC	-													0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	catgagataataatttttagCcattgtagatctaagaggga					novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	CCATTGTAGATC	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	SLC22A2-154	NM_003058	exon8	c.1280_1290del	p.427_430del	TTTTAGCCATTGT	.	92	6	99	0	.	0	0	0	0	0	-	160663435	CCATTGTAGATC	-	160663424	7	5	9	1	0	1	0	1	0	0	0	0	14485	740	26	0	393	0	SLC22A2	6	160663424	Frame_Shift_Del	DEL	CCATTGTAGATC	TCGA-OR-A5JA-01A-11D-A29I-10	10	160663424	10451643	265	1804	17	3								
AMZ1	155185	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	2752257	2752257	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	gaacggtggctggccatgtgCatccaggccctgcagcggga	16	12	0	0	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	AMZ1-90	NM_133463	exon7	c.C1242A	p.C414X	CATGTGCATCCAG	.	194	20	81	0	.	1	1	0	0	0	A	2752257	C	A	2752257	4	1	9	1	0	0	0	0	0	1	0	0	596	718	25	3	1264	3	AMZ1	7	2752257	Nonsense_Mutation	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10		2752257	156386406	266	1805										
C1GALT1	56913	broad.mit.edu;bcgsc.ca	37	chr7	7283285	7283285	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	cagatatcaacctaccttacCtgaacgtatactaaaggaaa	5	10	1	2	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	C1GALT1-90	NM_020156	exon4	c.C1019T	p.P340L	CCTTACCTGAACG	.	140	53	86	1	.	46	25	21	0	0	T	7283285	C	T	7283285	3	4	9	1	0	0	0	0	1	0	0	0	1958	681	24	3	1029	3	C1GALT1	7	7283285	Missense_Mutation	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	4531028	7283285	151855378	267	1806										
MACC1	346389	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	20180669	20180669	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	ctctccagtgtttagtcacaGggtttttcattctgtccaaa	7	10	4	0	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	MACC1-93	NM_182762	exon7	c.C2459G	p.P820R	GTCACAGGGTTTT	.	78	16	39	0	.	0	0	0	0	0	C	20180669	G	C	20180669	3	2	9	1	0	0	0	0	1	0	0	0	9171	1000	35	3	103	3	MACC1	7	20180669	Missense_Mutation	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	12897384	20180669	138957994	268	1807										
NUPL2	11097	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	23240027	23240027	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	ccctgcagcttccagttttgGatcacctggattttcaggac	9	12	2	0	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	NUPL2-228	NM_007342	exon7	c.G935T	p.G312V	GTTTTGGATCACC	.	167	16	82	0	.	32	29	3	0	0	T	23240027	G	T	23240027	3	4	9	1	0	0	0	0	1	0	0	0	10804	1174	41	3	961	3	NUPL2	7	23240027	Missense_Mutation	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	3059358	23240027	135898636	269	1808										
WIPF3	644150	broad.mit.edu	37	chr7	29923681	29923681	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	cacccttacccccgccccttCcctcttcctcccccatcaaa	1	25	2	0	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	WIPF3-69	NM_001080529	exon5	c.C571A	p.P191T	CCCCTTCCCTCTT	.	23	8	11	1	.	1	1	0	0	0	A	29923681	C	A	29923681	3	1	9	1	0	0	0	0	1	0	0	0	17407	855	30	3	585	3	WIPF3	7	29923681	Missense_Mutation	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	6683654	29923681	129214982	270	1809										
BBS9	27241	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	33423320	33423320	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	acaatttgaagatctttggcTcataaccaatgagcttattc	6	8	2	3	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	BBS9-230	NM_198428	exon18	c.T1832C	p.L611P	TTTGGCTCATAAC	.	104	15	54	0	.	9	8	1	0	0	C	33423320	T	C	33423320	3	2	9	1	0	0	0	0	1	0	0	0	1343	1551	54	4	1898	4	BBS9	7	33423320	Missense_Mutation	SNP	T	TCGA-OR-A5JA-01A-11D-A29I-10	3499639	33423320	125715343	271	1810										
AUTS2	26053	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr7	70255405	70255405	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	cccgtacccttctttccactGggaccccatccgggacccct	7	20	1	0	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	AUTS2-92	NM_015570	exon19	c.G3203T	p.W1068L	TCCACTGGGACCC	.	76	7	51	0	.	0	0	0	0	0	T	70255405	G	T	70255405	3	4	9	1	0	0	0	0	1	0	0	0	1226	1357	47	3	3422	3	AUTS2	7	70255405	Missense_Mutation	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	36832085	70255405	88883258	272	1811										
RHBDD2	57414	broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr7	75508485	75508485	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	tcttcactgcgctgctctcgCtgctggtttccgggcctcgc	11	16	3	0	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	RHBDD2-90	NM_001040456	exon1	c.C85A	p.L29M	CTCTCGCTGCTGG	.	170	44	65	1	.	211	149	62	0	0	A	75508485	C	A	75508485	3	1	9	1	0	0	0	0	1	0	0	0	13352	796	28	3	87	3	RHBDD2	7	75508485	Missense_Mutation	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	5253080	75508485	83630178	273	1812										
MAGI2	9863	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	77764344	77764344	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	cctcaggcactcaccctcctGaggaatgatgcgaagggtga	12	12	2	3	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	MAGI2-461	NM_012301	exon17	c.C3025A	p.Q1009K	CCTCCTGAGGAAT	.	189	45	132	0	.	0	0	0	0	0	T	77764344	G	T	77764344	3	4	9	1	0	0	0	0	1	0	0	0	9219	1299	45	3	1366	3	MAGI2	7	77764344	Missense_Mutation	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	2255859	77764344	81374319	274	1813										
MAGI2	9863	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr7	77814971	77814971	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	gaatccattcgaaaactggtCctgggtggcacttgttctgg	12	9	1	0	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	MAGI2-461	NM_012301	exon13	c.G2286T	p.R762S	ACTGGTCCTGGGT	.	177	18	148	0	.	0	0	0	0	0	A	77814971	C	A	77814971	3	1	9	1	0	0	0	0	1	0	0	0	9219	854	30	3	2121	3	MAGI2	7	77814971	Missense_Mutation	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	50627	77814971	81323692	275	1814										
GRM3	2913	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	86394717	86394717	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	tcaacaaagatgattacttgCtaccaggagtgaagttgggt	11	6	1	3	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	GRM3-528	NM_000840	exon2	c.C256A	p.L86I	TACTTGCTACCAG	.	153	17	107	0	.	0	0	0	0	0	A	86394717	C	A	86394717	3	1	9	1	0	0	0	0	1	0	0	0	6819	796	28	3	258	3	GRM3	7	86394717	Missense_Mutation	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	8579746	86394717	72743946	276	1815										
ABCB4	5244	broad.mit.edu;bcgsc.ca	37	chr7	87069022	87069022	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	acctcagcttcactttctgtGtccaatgctgacgtggcctc	8	14	3	1	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	ABCB4-96	NM_018850	exon14	c.C1692A	p.D564E	TTCTGTGTCCAAT	.	125	5	123	1	.	1	1	0	0	0	T	87069022	G	T	87069022	3	4	9	1	0	0	0	0	1	0	0	0	43	1368	48	3	2228	3	ABCB4	7	87069022	Missense_Mutation	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	674305	87069022	72069641	277	1816										
GTPBP10	85865	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	90003657	90003657	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	ttggaaagataatgtacagtGatttcaaacaggtaggtatt	10	3	1	2	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	GTPBP10-68	NM_033107	exon6	c.G580T	p.D194Y	TACAGTGATTTCA	.	69	15	57	0	.	0	0	0	0	0	T	90003657	G	T	90003657	3	4	9	1	0	0	0	0	1	0	0	0	6900	1290	45	3	602	3	GTPBP10	7	90003657	Missense_Mutation	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	2934635	90003657	69135006	278	1817										
KRIT1	889	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	91864777	91864777	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	taaatacaggtatctgctttCtctagggctaacattttact	6	8	2	0	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	KRIT1-132	NM_194456	exon9	c.G669T	p.E223D	TGCTTTCTCTAGG	.	99	13	74	0	.	8	6	2	0	0	A	91864777	C	A	91864777	3	1	9	1	0	0	0	0	1	0	0	0	8466	912	32	3	1589	3	KRIT1	7	91864777	Missense_Mutation	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	1861120	91864777	67273886	279	1818										
PVRIG	79037	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	99817600	99817600	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	gactggagggggccatggggCaccggaccctggtcctgccc	17	14	0	0	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	PVRIG-24	NM_024070	exon2	c.C67A	p.H23N	ATGGGGCACCGGA	.	309	76	231	1	.	3	2	1	0	0	A	99817600	C	A	99817600	3	1	9	1	0	0	0	0	1	0	0	0	12873	710	25	3	69	3	PVRIG	7	99817600	Missense_Mutation	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	7952823	99817600	59321063	280	1819										
MUC17	140453	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	100674469	100674469	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	aaggggacgtcttgaaccgtCagtgccagcagctgtctcag	13	11	3	1	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	MUC17-95	NM_001040105	exon2	c.C151A	p.Q51K	AACCGTCAGTGCC	.	265	72	196	1	.	0	0	0	0	0	A	100674469	C	A	100674469	3	1	9	1	0	0	0	0	1	0	0	0	10002	827	29	3	157	3	MUC17	7	100674469	Missense_Mutation	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	856869	100674469	58464194	281	1820										
MUC17	140453	ucsc.edu;bcgsc.ca	37	chr7	100681947	100681947	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	cagttctgaggctagcacccAttccacaactcctgttgaca	7	14	1	2	rs139220229	byfrequency	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	MUC17-95	NM_001040105	exon3	c.A7250T	p.H2417L	GCACCCATTCCAC	.	251	84	182	3	A|0.999;T|0.001	0	0	0	0	0	T	100681947	A	T	100681947	3	4	9	1	0	0	0	0	1	0	0	0	10002	217	8	5	7260	5	MUC17	7	100681947	Missense_Mutation	SNP	A	TCGA-OR-A5JA-01A-11D-A29I-10	7478	100681947	58456716	282	1821										
RELN	5649	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	103180836	103180836	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	ttgagagaatactgtaggagCacgggttgactcctggggtc	15	7	0	3	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	RELN-574	NM_173054	exon44	c.G6738T	p.V2246V	TAGGAGCACGGGT	.	107	37	55	0	.	0	0	0	0	0	A	103180836	C	A	103180836	2	1	9	1	0	0	0	0	0	0	0	1	13255	697	25	3		3	RELN	7	103180836	Silent	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	2498889	103180836	55957827	283	1822										
RELN	5649	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	103243894	103243894	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	cataattgtggacggaagggCagcttctgggtggcattcag	15	7	2	0	rs114389730	alternate_allele	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	RELN-574	NM_173054	exon24	c.G3190C	p.A1064P	GAAGGGCAGCTTC	.	137	43	115	1	C|0.998;T|0.002	0	0	0	0	0	G	103243894	C	G	103243894	3	3	9	1	0	0	0	0	1	0	0	0	13255	710	25	3	7360	3	RELN	7	103243894	Missense_Mutation	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	63058	103243894	55894769	284	1823										
ZNF277	11179	ucsc.edu	37	chr7	111927088	111927088	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	cacatgattattgagcataaGattgtcatagctgatgtcaa	8	6	2	4	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	ZNF277-155	NM_021994	exon2	c.G252T	p.K84N	GCATAAGATTGTC	.	178	21	118	4	.	6	6	0	0	0	T	111927088	G	T	111927088	3	4	9	1	0	0	0	0	1	0	0	0	17849	933	33	3	258	3	ZNF277	7	111927088	Missense_Mutation	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	8683194	111927088	47211575	285	1824										
IFRD1	3475	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr7	112090794	112090794	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	caccgcggtagcagtgctggCggcggcgggtcaggagcagc	19	12	1	0	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	IFRD1-91	NM_001007245	exon2	c.C51A	p.G17G	TGCTGGCGGCGGC	.	283	42	97	0	.	13	8	5	0	0	A	112090794	C	A	112090794	2	1	9	1	0	0	0	0	0	0	0	1	7574	755	27	2		2	IFRD1	7	112090794	Silent	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	163706	112090794	47047869	286	1825										
TFEC	22797	ucsc.edu;bcgsc.ca	37	chr7	115580883	115580883	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	gcaatagtctactgaattctGctcaggatggctctgctgtt	10	9	4	1	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	TFEC-153	NM_012252	exon8	c.C766A	p.Q256K	AATTCTGCTCAGG	.	239	25	199	2	.	0	0	0	0	0	T	115580883	G	T	115580883	3	4	9	1	0	0	0	0	1	0	0	0	15839	1328	46	3	281	3	TFEC	7	115580883	Missense_Mutation	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	3490089	115580883	43557780	287	1826										
IQUB	154865	bcgsc.ca	37	chr7	123109376	123109376	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	agctctctggctctgatggtGaactgcgtatccatctcaat	9	11	3	2	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	IQUB-156	NM_178827	exon9	c.C1473A	p.F491L	GATGGTGAACTGC	.	114	42	99	4	.	0	0	0	0	0	T	123109376	G	T	123109376	3	4	9	1	0	0	0	0	1	0	0	0	7841	1281	45	3	922	3	IQUB	7	123109376	Missense_Mutation	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	7528493	123109376	36029287	288	1827										
POT1	25913	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	124491967	124491967	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	ctgattgacagataacatctGaatgctgattggctgtcaaa	9	7	2	5	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	POT1-227	NM_015450	exon11	c.C908A	p.S303X	ACATCTGAATGCT	.	185	47	151	0	.	5	4	1	0	0	T	124491967	G	T	124491967	4	4	9	1	0	0	0	0	0	1	0	0	12289	1294	45	3	1032	3	POT1	7	124491967	Nonsense_Mutation	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	1382591	124491967	34646696	289	1828										
GRM8	2918	broad.mit.edu;ucsc.edu	37	chr7	126410002	126410002	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	gacaaaggccaatgtatccaGggcagagatctttgtgcata	11	8	1	1	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	GRM8-581	NM_000845	exon6	c.C1274A	p.P425H	TATCCAGGGCAGA	.	138	22	140	2	.	0	0	0	0	0	T	126410002	G	T	126410002	3	4	9	1	0	0	0	0	1	0	0	0	6824	1000	35	3	1522	3	GRM8	7	126410002	Missense_Mutation	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	1918035	126410002	32728661	290	1829										
SND1	27044	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	127631020	127631020	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	gcattgaatgccccagaggaGcccgaaacctcccaggcttg	11	14	0	2	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	SND1-92	NM_014390	exon16	c.G1690T	p.A564S	AGAGGAGCCCGAA	.	109	33	80	0	.	94	64	30	0	0	T	127631020	G	T	127631020	3	4	9	1	0	0	0	0	1	0	0	0	14879	971	34	3	1752	3	SND1	7	127631020	Missense_Mutation	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	1221018	127631020	31507643	291	1830										
PLXNA4	91584	broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr7	131872275	131872275	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	caaacatcaccaccacgttgCttccggcattcaggttggtg	9	13	2	0	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	PLXNA4-91	NM_020911	exon15	c.G2948T	p.S983I	ACGTTGCTTCCGG	.	116	26	91	2	.	0	0	0	0	0	A	131872275	C	A	131872275	3	1	9	1	0	0	0	0	1	0	0	0	12151	797	28	3	2808	3	PLXNA4	7	131872275	Missense_Mutation	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	4241255	131872275	27266388	292	1831										
PARP12	64761	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	139727101	139727101	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	gtagacttcccagagggccaGgttctgtactcgctcaatct	10	12	3	2	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	PARP12-525	NM_022750	exon10	c.C1603A	p.L535M	GGGCCAGGTTCTG	.	184	46	169	0	.	17	10	7	0	0	T	139727101	G	T	139727101	3	4	9	1	0	0	0	0	1	0	0	0	11486	991	35	3	514	3	PARP12	7	139727101	Missense_Mutation	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	7854826	139727101	19411562	293	1832										
TAS2R4	50832	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	141478815	141478815	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	tatcagtgagggcatcttgtCtttagtggtttctttggtct	11	6	5	1	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	TAS2R4-90	NM_016944	exon1	c.C527A	p.S176Y	TCTTGTCTTTAGT	.	202	23	135	1	.	0	0	0	0	0	A	141478815	C	A	141478815	3	1	9	1	0	0	0	0	1	0	0	0	15614	913	32	3	529	3	TAS2R4	7	141478815	Missense_Mutation	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	1751714	141478815	17659848	294	1833										
EPHA1	2041	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	143098540	143098540	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	gggaaactcttgcagtcccgCacggtgaactgcagctccac	11	14	1	1	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	EPHA1-1436	NM_005232	exon3	c.G309T	p.V103V	GTCCCGCACGGTG	.	170	20	134	1	.	0	0	0	0	0	A	143098540	C	A	143098540	2	1	9	1	0	0	0	0	0	0	0	1	5178	697	25	3		3	EPHA1	7	143098540	Silent	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	1619725	143098540	16040123	295	1834										
ZNF212	7988	hgsc.bcm.edu	37	chr7	148936892	148936892	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	ggcggagtcggcgcctgctcGggtaaagaggcaccggcgcg	19	12	0	1	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	ZNF212-91	NM_012256	exon1	c.G23T	p.R8L	CTGCTCGGGTAAA	.	56	18	4	0	.	0	0	0	0	0	T	148936892	G	T	148936892	3	4	9	1	0	0	0	0	1	0	0	0	17805	1130	39	2	25	2	ZNF212	7	148936892	Missense_Mutation	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	5838352	148936892	10201771	296	1835										
SSPO	23145	hgsc.bcm.edu;broad.mit.edu	37	chr7	149499235	149499235	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	tgcggcctcctctgccagggGgcagctgcccgcgtgaccgg	16	16	1	1	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	.	NM_198455	exon51	c.G7603T	p.G2535C	CCAGGGGGCAGCT	.	68	5	23	0	.	0	0	0	0	0	T	149499235	G	T	149499235	3	4	9	1	0	0	0	0	1	0	0	0	15226	1232	43	3	7801	3	SSPO	7	149499235	Missense_Mutation	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	562343	149499235	9639428	297	1836										
SSPO	23145	broad.mit.edu;bcgsc.ca	37	chr7	149503951	149503951	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	acgggcttctgcgcccccggCtgcacctgcccccctggtct	11	20	2	0	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	.	NM_198455	exon60	c.C8775A	p.G2925G	CCCCGGCTGCACC	.	116	35	66	1	.	0	0	0	0	0	A	149503951	C	A	149503951	2	1	9	1	0	0	0	0	0	0	0	1	15226	796	28	3		3	SSPO	7	149503951	Silent	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	4716	149503951	9634712	298	1837										
MLL3	58508	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	151879463	151879463	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	tggctgttttgtaaacagttCtttatggaatgactgtgcag	11	5	1	1	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	MLL3-1398	NM_170606	exon36	c.G5482T	p.E1828X	ACAGTTCTTTATG	.	158	41	142	0	.	2	1	1	0	0	A	151879463	C	A	151879463	4	1	9	1	0	0	0	0	0	1	0	0	9650	922	32	3	9349	3	MLL3	7	151879463	Nonsense_Mutation	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	2375512	151879463	7259200	299	1838										
EFHA2	286097	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	16944544	16944544	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	gaagaaaagcgtgcaatgctGgtaagaatactttatagtag	11	4	0	2	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	EFHA2-91	NM_181723	exon7	c.G849T	p.L283L	AATGCTGGTAAGA	.	28	5	57	0	.	0	0	0	0	0	T	16944544	G	T	16944544	2	4	9	1	0	0	0	0	0	0	0	1	4955	1362	47	3		3	EFHA2	8	16944544	Silent	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10		16944544	129419478	300	1839										
BMP1	649	broad.mit.edu;bcgsc.ca	37	chr8	22064484	22064484	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	ctccagcacccccgggcaccGggtcaagctggtaaggggtc	14	15	1	0	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	BMP1-155	NM_006129	exon17	c.G2351T	p.R784L	GGCACCGGGTCAA	.	242	9	356	0	.	0	0	0	0	0	T	22064484	G	T	22064484	3	4	9	1	0	0	0	0	1	0	0	0	1457	1116	39	2	2507	2	BMP1	8	22064484	Missense_Mutation	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	5119940	22064484	124299538	301	1840										
ENTPD4	9583	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr8	23294562	23294562	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	cactgttctggaagtgaattGggggctggtagaccccattg	14	8	1	2	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	ENTPD4-92	NM_004901	exon10	c.C1259A	p.P420Q	TGAATTGGGGGCT	.	116	33	149	1	.	10	6	4	0	0	T	23294562	G	T	23294562	3	4	9	1	0	0	0	0	1	0	0	0	5154	1348	47	3	607	3	ENTPD4	8	23294562	Missense_Mutation	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	1230078	23294562	123069460	302	1841										
NEFM	4741	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	24774959	24774959	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	aaggggaaaaggaggaagaaGaaggccaggaagaagaggag	19	2	0	4	rs138461187	by1000genomes;alternate_allele	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	NEFM-577	NM_005382	exon3	c.G1591T	p.E531X	GAAGAAGAAGGCC	.	63	11	88	1	G|0.999;A|0.001	11	10	1	0	0	T	24774959	G	T	24774959	4	4	9	1	0	0	0	0	0	1	0	0	10345	943	33	3	1601	3	NEFM	8	24774959	Nonsense_Mutation	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	1480397	24774959	121589063	303	1842										
PRKDC	5591	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr8	48790325	48790325	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	actggattgaaataattcttCcatgacatgctgctgttccc	7	10	1	2	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	PRKDC-1515	.	.	.	.	ATTCTTCCATGAC	.	79	39	96	0	.	2	0	2	0	0	A	48790325	C	A	48790325	4	1	9	1	0	0	0	0	0	1	0	0	12553	864	30	3	7251	3	PRKDC	8	48790325	Nonsense_Mutation	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	24015366	48790325	97573697	304	1843										
PCMTD1	115294	bcgsc.ca	37	chr8	52733102	52733102	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	gtctagaggctgaggaataaGctgattacccacaaatacgt	10	8	1	3	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	PCMTD1-68	NM_052937	exon6	c.C883T	p.L295F	GAATAAGCTGATT	.	172	7	204	0	.	5	5	0	0	0	A	52733102	G	A	52733102	3	1	9	1	0	0	0	0	1	0	0	0	11615	971	34	3	194	3	PCMTD1	8	52733102	Missense_Mutation	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	3942777	52733102	93630920	305	1844										
PCMTD1	115294	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	52744112	52744112	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	ccaagtgttctgtccagttcGcataatctgtgttaactatt	7	9	2	0	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	PCMTD1-68	NM_052937	exon5	c.C598A	p.R200R	CAGTTCGCATAAT	.	38	7	40	0	.	7	7	0	0	0	T	52744112	G	T	52744112	2	4	9	1	0	0	0	0	0	0	0	1	11615	1095	38	2		2	PCMTD1	8	52744112	Silent	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	11010	52744112	93619910	306	1845										
SLCO5A1	81796	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr8	70591644	70591644	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	tatgatagctgatggttgggCacatgctgtgatgaaggtga	15	4	0	5	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	SLCO5A1-94	NM_001146008	exon7	c.G1993T	p.A665S	GTTGGGCACATGC	.	185	78	207	1	.	0	0	0	0	0	A	70591644	C	A	70591644	3	1	9	1	0	0	0	0	1	0	0	0	14766	710	25	3	565	3	SLCO5A1	8	70591644	Missense_Mutation	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	17847532	70591644	75772378	307	1846										
TRPA1	8989	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr8	72973992	72973992	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	aatgaatggctgtgcaccttCccttctgtaaagggttttaa	9	8	1	1	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	TRPA1-230	NM_007332	exon7	c.G812T	p.G271V	CACCTTCCCTTCT	.	93	7	118	0	.	0	0	0	0	0	A	72973992	C	A	72973992	3	1	9	1	0	0	0	0	1	0	0	0	16615	855	30	3	2631	3	TRPA1	8	72973992	Missense_Mutation	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	2382348	72973992	73390030	308	1847										
PI15	51050	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	75737605	75737605	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	ccaataatttcactgatattGaagcagctctgaaagcacaa	6	9	2	3	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	PI15-515	NM_015886	exon2	c.G121C	p.E41Q	GATATTGAAGCAG	.	109	18	102	1	.	0	0	0	0	0	C	75737605	G	C	75737605	3	2	9	1	0	0	0	0	1	0	0	0	11897	1291	45	3	123	3	PI15	8	75737605	Missense_Mutation	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	2763613	75737605	70626417	309	1848										
SLC10A5	347051	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr8	82607084	82607084	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	tgaacttacaaggatggtttCttcagtctttgtgaaaaata	8	5	3	2	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	SLC10A5-90	NM_001010893	exon1	c.G124T	p.E42X	TGGTTTCTTCAGT	.	69	50	95	1	.	0	0	0	0	0	A	82607084	C	A	82607084	4	1	9	1	0	0	0	0	0	1	0	0	14412	922	32	3	1194	3	SLC10A5	8	82607084	Nonsense_Mutation	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	6869479	82607084	63756938	310	1849										
KIAA1429	25962	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	95538629	95538629	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	ttcacttatatttgaggattCcaaaagatccatatccatag	5	8	1	2	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	KIAA1429-92	NM_015496	exon8	c.G1843T	p.E615X	AGGATTCCAAAAG	.	59	8	66	0	.	3	1	2	0	0	A	95538629	C	A	95538629	4	1	9	1	0	0	0	0	0	1	0	0	8252	864	30	3	3717	3	KIAA1429	8	95538629	Nonsense_Mutation	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	12931545	95538629	50825393	311	1850										
GDF6	392255	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr8	97157039	97157039	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	ggcctcgtactccaggggcgCgataatccagtcgtcccagc	12	15	0	0	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	GDF6-228	NM_001001557	exon2	c.G1120A	p.A374T	GGGGCGCGATAAT	.	159	10	140	0	.	0	0	0	0	0	T	97157039	C	T	97157039	3	4	9	1	0	0	0	0	1	0	0	0	6337	768	27	1	251	1	GDF6	8	97157039	Missense_Mutation	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	1618410	97157039	49206983	312	1851										
VPS13B	157680	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr8	100733234	100733234	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	taccttttaacaccacagagGatccagatattagcacagca	6	11	0	2	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	VPS13B-301	NM_017890	exon39	c.G7084T	p.D2362Y	ACAGAGGATCCAG	.	84	35	71	0	.	2	2	0	0	0	T	100733234	G	T	100733234	3	4	9	1	0	0	0	0	1	0	0	0	17228	1174	41	3	7428	3	VPS13B	8	100733234	Missense_Mutation	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	3576195	100733234	45630788	313	1852										
UBR5	51366	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	103284937	103284937	+	Silent	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	tggtgtagtagcacatcttcGaccaaagtgattgttaagct	10	7	1	1	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	UBR5-761	NM_015902	exon48	c.C6793A	p.R2265R	ATCTTCGACCAAA	.	112	60	147	1	.	2	1	1	0	0	T	103284937	G	T	103284937	2	4	9	1	0	0	0	0	0	0	0	1	16943	1066	37	2		2	UBR5	8	103284937	Silent	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	2551703	103284937	43079085	314	1853										
TRPS1	7227	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr8	116632191	116632191	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	cagaaaattctttgttctttCcagataccttgctttctgta	5	9	3	2	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	TRPS1-229	NM_014112	exon3	c.G134T	p.G45V	TTCTTTCCAGATA	.	85	36	109	0	.	0	0	0	0	0	A	116632191	C	A	116632191	3	1	9	1	0	0	0	0	1	0	0	0	16631	855	30	3	3770	3	TRPS1	8	116632191	Missense_Mutation	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	13347254	116632191	29731831	315	1854										
SQLE	6713	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr8	126030309	126030309	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	ctctcttcataggtgttcttCttttgggagacgcatataat	8	8	4	1	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	SQLE-523	NM_003129	exon8	c.C1213A	p.L405I	GTTCTTCTTTTGG	.	36	32	50	1	.	1	0	1	0	0	A	126030309	C	A	126030309	3	1	9	1	0	0	0	0	1	0	0	0	15165	913	32	3	1142	3	SQLE	8	126030309	Missense_Mutation	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	9398118	126030309	20333713	316	1855										
ZNF696	79943	hgsc.bcm.edu	37	chr8	144378868	144378868	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	ggcttcttccggcaccagcgActccacacgggcgagaagcc	12	16	1	1	rs7386259	byfrequency	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	ZNF696-90	NM_030895	exon3	c.A1023G	p.R341R	CCAGCGACTCCAC	.	5	5	0	0	A|0.118;G|0.882	0	0	0	0	0	G	144378868	A	G	144378868	2	3	9	1	0	0	0	0	0	0	0	1	18136	262	10	4		4	ZNF696	8	144378868	Silent	SNP	A	TCGA-OR-A5JA-01A-11D-A29I-10	18348559	144378868	1985154	317	1856										
PYCRL	65263	bcgsc.ca	37	chr8	144687947	144687947	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	ggctgctcgcagcccgccctGctccagggcgtggagtccat	14	16	0	0	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	PYCRL-90	NM_023078	exon6	c.C784A	p.Q262K	CGCCCTGCTCCAG	.	96	44	53	2	.	20	4	16	0	0	T	144687947	G	T	144687947	3	4	9	1	0	0	0	0	1	0	0	0	12892	1328	46	3	80	3	PYCRL	8	144687947	Missense_Mutation	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	309079	144687947	1676075	318	1857										
SCRIB	23513	hgsc.bcm.edu	37	chr8	144874554	144874554	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	ggggcgccacctcccaggggTgggggggacgccgggctctg	21	13	1	0	rs6991873		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	SCRIB-228	NM_015356	exon32	c.A4350G	p.P1450P	CAGGGGTGGGGGG	.	4	4	0	0	T|0.010;C|0.990	18	0	18	0	0	C	144874554	T	C	144874554	2	2	9	1	0	0	0	0	0	0	0	1	13972	1683	59	4		4	SCRIB	8	144874554	Silent	SNP	T	TCGA-OR-A5JA-01A-11D-A29I-10	186607	144874554	1489468	319	1858										
PLEC	5339	hgsc.bcm.edu	37	chr8	144996263	144996263	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	ctgccgccgctgctgctccaGctgctgcagctcctcctgct	10	19	0	0	rs11988293	byfrequency	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	PLEC-141	NM_201380	exon32	c.C8137T	p.L2713L	GCTCCAGCTGCTG	.	32	31	4	0	G|0.958;A|0.042	12	1	11	0	0	A	144996263	G	A	144996263	2	1	9	1	0	0	0	0	0	0	0	1	12081	962	34	3		3	PLEC	8	144996263	Silent	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	121709	144996263	1367759	320	1859										
SLC1A1	6505	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	4583052	4583052	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	ctgcagtatcacggccacatCtgccagcatcggagctgctg	11	14	2	0	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	SLC1A1-514	NM_004170	exon11	c.C1208A	p.S403Y	CCACATCTGCCAG	.	103	17	102	0	.	3	3	0	0	0	A	4583052	C	A	4583052	3	1	9	1	0	0	0	0	1	0	0	0	14466	913	32	3	1250	3	SLC1A1	9	4583052	Missense_Mutation	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10		4583052	136630379	321	1860										
ERMP1	79956	hgsc.bcm.edu	37	chr9	5832728	5832728	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	aactccccgcggtgtccagcGgccccgcgtagcacgagctg	13	17	0	0	rs1131727	byfrequency	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	ERMP1-69	NM_024896	exon1	c.C300G	p.A100A	TCCAGCGGCCCCG	.	30	12	1	0	G|0.572;C|0.428	1	0	1	0	0	C	5832728	G	C	5832728	2	2	9	1	0	0	0	0	0	0	0	1	5249	1103	39	2		2	ERMP1	9	5832728	Silent	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	1249676	5832728	135380703	322	1861										
RANBP6	26953	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr9	6013222	6013222	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	tcccagttcttccaagtgttCatcattaaggcaaccatctc	5	13	4	0	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	RANBP6-229	NM_012416	exon1	c.G2386T	p.E796X	AGTGTTCATCATT	.	83	24	64	0	.	14	6	8	0	0	A	6013222	C	A	6013222	4	1	9	1	0	0	0	0	0	1	0	0	13066	835	29	3	935	3	RANBP6	9	6013222	Nonsense_Mutation	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	180494	6013222	135200209	323	1862										
MPDZ	8777	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr9	13176296	13176296	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	agtaaagccagaagcaggccCcatacttatgtccaccgaag	9	12	0	1	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	MPDZ-231	NM_003829	exon20	c.G2770T	p.G924W	CAGGCCCCATACT	.	137	11	108	0	.	0	0	0	0	0	A	13176296	C	A	13176296	3	1	9	1	0	0	0	0	1	0	0	0	9750	623	22	3	3463	3	MPDZ	9	13176296	Missense_Mutation	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	7163074	13176296	128037135	324	1863										
MPDZ	8777	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr9	13188983	13188983	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	aatcacagtgcttgctggatCaattggatcctgacagaagg	11	8	2	2	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	MPDZ-231	NM_003829	exon17	c.G2164T	p.D722Y	CTGGATCAATTGG	.	74	16	54	0	.	0	0	0	0	0	A	13188983	C	A	13188983	3	1	9	1	0	0	0	0	1	0	0	0	9750	826	29	3	4081	3	MPDZ	9	13188983	Missense_Mutation	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	12687	13188983	128024448	325	1864										
BNC2	54796	broad.mit.edu;ucsc.edu	37	chr9	16437424	16437424	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	attgccatcagctccacaatGgatttggtttctccaaaccg	7	12	2	0	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	BNC2-92	NM_017637	exon6	c.C768A	p.S256S	CACAATGGATTTG	.	47	7	61	1	.	0	0	0	0	0	T	16437424	G	T	16437424	2	4	9	1	0	0	0	0	0	0	0	1	1476	1335	47	3		3	BNC2	9	16437424	Silent	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	3248441	16437424	124776007	326	1865										
MLLT3	4300	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr9	20414048	20414048	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	gatggtgagtaagttactatCtggttttggctcttttgaca	11	5	2	2	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	MLLT3-660	NM_004529	exon5	c.G796T	p.D266Y	TACTATCTGGTTT	.	243	31	155	1	.	8	5	3	0	0	A	20414048	C	A	20414048	3	1	9	1	0	0	0	0	1	0	0	0	9656	913	32	3	938	3	MLLT3	9	20414048	Missense_Mutation	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	3976624	20414048	120799383	327	1866										
IFNW1	3467	broad.mit.edu	37	chr9	21141179	21141179	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	gctaattgccccagcagattCtccttctcccactacctgca	5	17	2	1	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	IFNW1-90	NM_002177	exon1	c.G391T	p.E131X	CAGATTCTCCTTC	.	122	14	92	2	.	0	0	0	0	0	A	21141179	C	A	21141179	4	1	9	1	0	0	0	0	0	1	0	0	7573	922	32	3	200	3	IFNW1	9	21141179	Nonsense_Mutation	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	727131	21141179	120072252	328	1867										
ACO1	48	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	32430444	32430444	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	tgtagctgttggagtactatCtggaaacaggaattttgaag	12	4	1	1	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	ACO1-226	NM_002197	exon14	c.C1598A	p.S533Y	TACTATCTGGAAA	.	180	20	125	0	.	27	24	3	0	0	A	32430444	C	A	32430444	3	1	9	1	0	0	0	0	1	0	0	0	146	913	32	3	1648	3	ACO1	9	32430444	Missense_Mutation	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	11289265	32430444	108782987	329	1868										
CNTFR	1271	broad.mit.edu;ucsc.edu	37	chr9	34568922	34568922	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	actgtgtctctgggcgtagaCaactgcggcggcggcggcaa	16	11	1	1	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	CNTFR-518	NM_147164	exon3	c.G58T	p.V20F	CGTAGACAACTGC	.	170	18	149	2	.	0	0	0	0	0	A	34568922	C	A	34568922	3	1	9	1	0	0	0	0	1	0	0	0	3644	478	17	3	1092	3	CNTFR	9	34568922	Missense_Mutation	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	2138478	34568922	106644509	330	1869										
TPM2	7169	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr9	35682151	35682151	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	cgttctcctccttggcactgGccaaggtctctgtgagggga	13	12	2	1	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	TPM2-515	NM_213674	exon9	c.C782A	p.A261D	GCACTGGCCAAGG	.	115	23	75	0	.	9	8	1	0	0	T	35682151	G	T	35682151	3	4	9	1	0	0	0	0	1	0	0	0	16444	1203	42	3	76	3	TPM2	9	35682151	Missense_Mutation	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	1113229	35682151	105531280	331	1870										
SPAG8	26206	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	35810505	35810505	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	tggtgtgtcacagactcaacCtcgaagagcttccttgtggg	12	10	2	2	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	SPAG8-91	NM_001039592	exon5	c.G1131T	p.E377D	CTCAACCTCGAAG	.	148	34	102	1	.	1	1	0	0	0	A	35810505	C	A	35810505	3	1	9	1	0	0	0	0	1	0	0	0	15021	680	24	3	589	3	SPAG8	9	35810505	Missense_Mutation	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	128354	35810505	105402926	332	1871										
RECK	8434	broad.mit.edu;bcgsc.ca	37	chr9	36102095	36102095	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	gcatttttttttcaagatcaGattgtgtggagattcttaaa	8	4	3	3	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	RECK-93	NM_021111	exon12	c.G1303T	p.D435Y	AGATCAGATTGTG	.	81	5	66	0	.	0	0	0	0	0	T	36102095	G	T	36102095	3	4	9	1	0	0	0	0	1	0	0	0	13235	942	33	3	1349	3	RECK	9	36102095	Missense_Mutation	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	291590	36102095	105111336	333	1872										
GLIPR2	152007	ucsc.edu	37	chr9	36147782	36147782	+	Splice_Site	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	tccattttgcaatcattccaGcttccaaacagtttcataat	3	11	2	0	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	GLIPR2-93	NM_022343	exon2	c.14-1G>T	.	ATTCCAGCTTCCA	.	84	30	80	3	.	0	0	0	0	0	T	36147782	G	T	36147782	5	4	9	1	0	0	0	0	0	0	1	0	6464	985	34	3	19	3	GLIPR2	9	36147782	Splice_Site	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	45687	36147782	105065649	334	1873										
APBA1	320	hgsc.bcm.edu	37	chr9	72131953	72131953	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	ccgagctgggcgcggaggtcCtcgagggctcgcccgcgctg	18	15	0	0	rs149995729		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	APBA1-91	NM_001163	exon2	c.G174A	p.E58E	GAGGTCCTCGAGG	.	14	8	0	0	C|0.995;T|0.005	0	0	0	0	0	T	72131953	C	T	72131953	2	4	9	1	0	0	0	0	0	0	0	1	756	680	24	3		3	APBA1	9	72131953	Silent	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	35984171	72131953	69081478	335	1874										
MAMDC2	256691	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr9	72741314	72741314	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	ttgcggaggtcgagttcagtGctccttaccccatggaggta	13	10	1	0	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	MAMDC2-91	NM_153267	exon6	c.G883T	p.A295S	TTCAGTGCTCCTT	.	131	25	86	0	.	1	1	0	0	0	T	72741314	G	T	72741314	3	4	9	1	0	0	0	0	1	0	0	0	9231	1319	46	3	905	3	MAMDC2	9	72741314	Missense_Mutation	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	609361	72741314	68472117	336	1875										
TRPM3	80036	broad.mit.edu	37	chr9	73240174	73240174	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	gcgtgtagttgcagcgataaGccccgcccatcaggtactcg	12	13	1	0	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	TRPM3-521	NM_001007471	exon13	c.C1706A	p.A569D	CGATAAGCCCCGC	.	69	3	96	0	.	0	0	0	0	0	T	73240174	G	T	73240174	3	4	9	1	0	0	0	0	1	0	0	0	16625	971	34	3	3469	3	TRPM3	9	73240174	Missense_Mutation	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	498860	73240174	67973257	337	1876										
TRPM6	140803	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr9	77411734	77411734	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	ttggaagtcctgggactgggGaacatgtgacatctcagctt	13	8	1	1	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	TRPM6-335	NM_017662	exon18	c.C2314A	p.P772T	ACTGGGGAACATG	.	170	56	140	1	.	0	0	0	0	0	T	77411734	G	T	77411734	3	4	9	1	0	0	0	0	1	0	0	0	16628	1174	41	3	3842	3	TRPM6	9	77411734	Missense_Mutation	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	4171560	77411734	63801697	338	1877										
VPS13A	23230	ucsc.edu	37	chr9	79968553	79968553	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	aagtagcctatataggcattAcaaggttagatgcattaaat	8	5	0	1	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	VPS13A-161	NM_001018038	exon54	c.A7648G	p.T2550A	GGCATTACAAGGT	.	239	29	207	3	.	0	0	0	0	0	G	79968553	A	G	79968553	3	3	9	1	0	0	0	0	1	0	0	0	17227	391	14	4	7862	4	VPS13A	9	79968553	Missense_Mutation	SNP	A	TCGA-OR-A5JA-01A-11D-A29I-10	2556819	79968553	61244878	339	1878										
C9orf3	84909	broad.mit.edu	37	chr9	97522087	97522087	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	tggacatacagctggaccctGccagagatgacctgcctctc	10	14	1	2	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	C9orf3-91	NM_001193331	exon2	c.G22T	p.A8S	GACCCTGCCAGAG	.	115	18	97	2	.	0	0	0	0	0	T	97522087	G	T	97522087	3	4	9	1	0	0	0	0	1	0	0	0	2483	1319	46	3	24	3	C9orf3	9	97522087	Missense_Mutation	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	17553534	97522087	43691344	340	1879										
TDRD7	23424	broad.mit.edu;bcgsc.ca	37	chr9	100234690	100234690	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	gacattccacttgttgttctGtacgatacctcaggagaaga	9	9	2	2	rs200338871	alternate_allele	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	TDRD7-93	NM_014290	exon10	c.G1857T	p.L619L	TGTTCTGTACGAT	.	195	9	170	1	G|1.000;A|0.000	8	8	0	0	0	T	100234690	G	T	100234690	2	4	9	1	0	0	0	0	0	0	0	1	15772	1364	48	3		3	TDRD7	9	100234690	Silent	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	2712603	100234690	40978741	341	1880										
GALNT12	79695	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr9	101606450	101606450	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	aaaaccagattgtgggacacCaggtcattctgtacctctgt	9	10	3	1	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	GALNT12-92	NM_024642	exon8	c.C1417A	p.Q473K	GGACACCAGGTCA	.	122	8	103	0	.	0	0	0	0	0	A	101606450	C	A	101606450	3	1	9	1	0	0	0	0	1	0	0	0	6230	595	21	3	1447	3	GALNT12	9	101606450	Missense_Mutation	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	1371760	101606450	39606981	342	1881										
MRPL50	54534	broad.mit.edu;bcgsc.ca	37	chr9	104152827	104152827	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	atttagatctatcttgaataGggacattatagaaatcaaga	7	4	3	4	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	MRPL50-226	NM_019051	exon2	c.C398A	p.P133H	TGAATAGGGACAT	.	208	7	140	0	.	62	60	2	0	0	T	104152827	G	T	104152827	3	4	9	1	0	0	0	0	1	0	0	0	9842	1000	35	3	82	3	MRPL50	9	104152827	Missense_Mutation	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	2546377	104152827	37060604	343	1882										
OR13C5	138799	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr9	107361140	107361140	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	atgtcagcacaggccagtttCatgacagctagaatttcaca	8	10	3	2	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	OR13C5-72	NM_001004482	exon1	c.G555T	p.M185I	CAGTTTCATGACA	.	451	51	376	0	.	0	0	0	0	0	A	107361140	C	A	107361140	3	1	9	1	0	0	0	0	1	0	0	0	10966	826	29	3	403	3	OR13C5	9	107361140	Missense_Mutation	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	3208313	107361140	33852291	344	1883										
TAL2	6887	broad.mit.edu	37	chr9	108425002	108425002	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	gctgctcaggggaacattctGgggctcttccctcaaggacc	12	13	4	0	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	TAL2-636	NM_005421	exon1	c.G225T	p.L75L	CATTCTGGGGCTC	.	96	4	57	0	.	0	0	0	0	0	T	108425002	G	T	108425002	2	4	9	1	0	0	0	0	0	0	0	1	15579	1335	47	3		3	TAL2	9	108425002	Silent	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	1063862	108425002	32788429	345	1884										
AKAP2	11217	hgsc.bcm.edu	37	chr9	112811038	112811038	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	cccggagtctcctggaccccCggagtctcctggacccccgg	12	19	2	0	rs78923754	byfrequency	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	AKAP2-24	NM_001004065	exon1	c.C59T	p.P20L	GACCCCCGGAGTC	.	16	9	0	0	C|0.917;T|0.083	1	1	0	0	0	T	112811038	C	T	112811038	3	4	9	1	0	0	0	0	1	0	0	0	451	652	23	1	61	1	AKAP2	9	112811038	Missense_Mutation	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	4386036	112811038	28402393	346	1885										
DNAJC25-GNG10	552891	hgsc.bcm.edu	37	chr9	114393784	114393784	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	tgctgccggcgctgctgctgGtgcggcccgcgggggccctg	19	15	0	0	rs10980984	byfrequency	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	DNAJC25-GNG10-159	NM_004125	exon1	c.G97A	p.V33M	CTGCTGGTGCGGC	.	7	7	0	0	G|0.806;A|0.194	5	3	2	0	0	A	114393784	G	A	114393784	3	1	9	1	0	0	0	0	1	0	0	0	4655	1261	44	3	99	3	DNAJC25-GNG10	9	114393784	Missense_Mutation	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	1582746	114393784	26819647	347	1886										
C9orf84	158401	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr9	114508596	114508596	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	atgttggcatgttaggaataGaggagttagtggcatttcta	13	3	1	1	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	C9orf84-92	NM_173521	exon8	c.C805A	p.L269I	GGAATAGAGGAGT	.	75	15	58	0	.	1	1	0	0	0	T	114508596	G	T	114508596	3	4	9	1	0	0	0	0	1	0	0	0	2506	933	33	3	3605	3	C9orf84	9	114508596	Missense_Mutation	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	114812	114508596	26704835	348	1887										
AMBP	259	broad.mit.edu	37	chr9	116840418	116840418	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	acttggatgttgtcgggcggCgttggcacagggccagcgct	17	10	0	0	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	AMBP-91	NM_001633	exon1	c.G72T	p.T24T	GGGCGGCGTTGGC	.	114	12	75	1	.	1	1	0	0	0	A	116840418	C	A	116840418	2	1	9	1	0	0	0	0	0	0	0	1	564	755	27	2		2	AMBP	9	116840418	Silent	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	2331822	116840418	24373013	349	1888										
PAPPA	5069	ucsc.edu;bcgsc.ca;mdanderson.org	37	chr9	118950037	118950037	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	aacacagaggtcattgccagCtacaatcagctctcaagttt	7	11	3	1	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	PAPPA-77	NM_002581	exon2	c.C1020A	p.S340R	TGCCAGCTACAAT	.	160	36	130	2	.	0	0	0	0	0	A	118950037	C	A	118950037	3	1	9	1	0	0	0	0	1	0	0	0	11461	796	28	3	1026	3	PAPPA	9	118950037	Missense_Mutation	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	2109619	118950037	22263394	350	1889										
PSMD5	5711	broad.mit.edu	37	chr9	123580434	123580434	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	tctgagcccagggttggtttGcaatggcctgaaatggaagg	15	7	1	2	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	PSMD5-90	NM_005047	exon10	c.C1265A	p.A422E	TGGTTTGCAATGG	.	62	6	34	0	.	0	0	0	0	0	T	123580434	G	T	123580434	3	4	9	1	0	0	0	0	1	0	0	0	12733	1319	46	3	253	3	PSMD5	9	123580434	Missense_Mutation	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	4630397	123580434	17632997	351	1890										
PHF19	26147	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	123624881	123624881	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	ctgacccaggcttgctctttCctctcttacgcagctcagag	8	15	3	2	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	PHF19-136	NM_015651	exon11	c.G1115T	p.G372V	CTCTTTCCTCTCT	.	105	24	91	0	.	4	4	0	0	0	A	123624881	C	A	123624881	3	1	9	1	0	0	0	0	1	0	0	0	11858	855	30	3	647	3	PHF19	9	123624881	Missense_Mutation	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	44447	123624881	17588550	352	1891										
STXBP1	6812	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	130427557	130427557	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	acaatgccctgctggctcagCtaatccaggacaagctcgat	9	13	1	0	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	STXBP1-91	NM_001032221	exon8	c.C610A	p.L204I	GCTCAGCTAATCC	.	133	22	140	0	.	15	13	2	0	0	A	130427557	C	A	130427557	3	1	9	1	0	0	0	0	1	0	0	0	15389	796	28	3	640	3	STXBP1	9	130427557	Missense_Mutation	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	6802676	130427557	10785874	353	1892										
TBC1D13	54662	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr9	131559410	131559410	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	tcatcctggacccccagaatGagtttgaaacccttcgtaag	8	12	1	3	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	TBC1D13-90	NM_018201	exon7	c.G460T	p.E154X	CAGAATGAGTTTG	.	133	39	98	0	.	23	20	3	0	0	T	131559410	G	T	131559410	4	4	9	1	0	0	0	0	0	1	0	0	15639	1291	45	3	486	3	TBC1D13	9	131559410	Nonsense_Mutation	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	1131853	131559410	9654021	354	1893										
RAPGEF1	2889	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr9	134501621	134501621	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	tggcgtatctgtctgctgccCtggggccagaggtccgtctg	15	12	3	1	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	RAPGEF1-849	NM_198679	exon10	c.G1393T	p.G465W	GCTGCCCTGGGGC	.	172	51	128	0	.	22	18	4	0	0	A	134501621	C	A	134501621	3	1	9	1	0	0	0	0	1	0	0	0	13078	681	24	3	1954	3	RAPGEF1	9	134501621	Missense_Mutation	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	2942211	134501621	6711810	355	1894										
VAV2	7410	broad.mit.edu;bcgsc.ca	37	chr9	136648640	136648640	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	ctcactgaacttgcagggagGtatcacttccaggcactcct	9	13	2	1	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	VAV2-1273	NM_001134398	exon19	c.C1708A	p.P570T	AGGGAGGTATCAC	.	185	9	170	1	.	38	38	0	0	0	T	136648640	G	T	136648640	3	4	9	1	0	0	0	0	1	0	0	0	17170	1261	44	3	976	3	VAV2	9	136648640	Missense_Mutation	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	2147019	136648640	4564791	356	1895										
SFMBT2	57713	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr10	7214601	7214601	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	atggggggcttggagatcttCtttctctttccatagtaata	10	7	3	1	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	SFMBT2-141	NM_001029880	exon18	c.G2007T	p.K669N	GATCTTCTTTCTC	.	22	9	21	0	.	0	0	0	0	0	A	7214601	C	A	7214601	3	1	9	1	0	0	0	0	1	0	0	0	14193	912	32	3	693	3	SFMBT2	10	7214601	Missense_Mutation	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10		7214601	128320146	357	1896										
GATA3	2625	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr10	8115981	8115981	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	ccagcatggtcaccgccatgGgttagagccctgctcgatgc	12	14	1	1	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	GATA3-1004	NM_001002295	exon6	c.G1330T	p.G444C	GCCATGGGTTAGA	.	64	26	61	0	.	1	1	0	0	0	T	8115981	G	T	8115981	3	4	9	1	0	0	0	0	1	0	0	0	6275	1232	43	3	1348	3	GATA3	10	8115981	Missense_Mutation	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	901380	8115981	127418766	358	1897										
DHTKD1	55526	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr10	12148305	12148305	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	ttgaatatgggatgagcattGagagcccaaagttactgccc	11	8	0	3	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	DHTKD1-515	NM_018706	exon11	c.G1957T	p.E653X	AGCATTGAGAGCC	.	120	55	189	1	.	2	2	0	0	0	T	12148305	G	T	12148305	4	4	9	1	0	0	0	0	0	1	0	0	4511	1291	45	3	1999	3	DHTKD1	10	12148305	Nonsense_Mutation	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	4032324	12148305	123386442	359	1898										
MLLT10	8028	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	21962834	21962834	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	gagcctcagtgttggctcatCtccagttggttcaggtaggg	14	9	4	0	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	MLLT10-658	NM_001195626	exon10	c.C1607A	p.S536Y	GCTCATCTCCAGT	.	43	7	73	0	.	0	0	0	0	0	A	21962834	C	A	21962834	3	1	9	1	0	0	0	0	1	0	0	0	9654	913	32	3	1645	3	MLLT10	10	21962834	Missense_Mutation	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	9814529	21962834	113571913	360	1899										
GPR158	57512	ucsc.edu;bcgsc.ca	37	chr10	25839971	25839971	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	taagatgggctcgtcttctcGgttttgctactgtttacgga	11	8	2	1	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	GPR158-141	NM_020752	exon6	c.G1471T	p.G491C	CTTCTCGGTTTTG	.	131	24	167	2	.	0	0	0	0	0	T	25839971	G	T	25839971	3	4	9	1	0	0	0	0	1	0	0	0	6683	1116	39	2	1493	2	GPR158	10	25839971	Missense_Mutation	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	3877137	25839971	109694776	361	1900										
SVIL	6840	broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr10	29818653	29818653	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	cgtggctgcgatgaccacctCttcagtggtgatgggctggg	16	10	2	2	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	SVIL-96	NM_021738	exon12	c.G2227T	p.E743X	CCACCTCTTCAGT	.	44	17	50	1	.	0	0	0	0	0	A	29818653	C	A	29818653	4	1	9	1	0	0	0	0	0	1	0	0	15458	922	32	3	4525	3	SVIL	10	29818653	Nonsense_Mutation	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	3978682	29818653	105716094	362	1901										
GJD4	219770	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr10	35897531	35897531	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	gtggtgctccccacctgagaGccaggaagtctgagtgggtg	16	10	1	2	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	GJD4-155	NM_153368	exon2	c.G1090T	p.A364S	CTGAGAGCCAGGA	.	158	10	128	0	.	0	0	0	0	0	T	35897531	G	T	35897531	3	4	9	1	0	0	0	0	1	0	0	0	6439	971	34	3	1096	3	GJD4	10	35897531	Missense_Mutation	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	6078878	35897531	99637216	363	1902										
BMS1	9790	broad.mit.edu	37	chr10	43292520	43292520	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	aggaagaagactcagaaaatGaagaggctattagaaaaaag	11	3	1	6	rs146520651	alternate_allele	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	BMS1-93	NM_014753	exon10	c.G1828T	p.E610X	GAAAATGAAGAGG	.	98	4	123	0	G|1.000;C|0.000	7	7	0	0	0	T	43292520	G	T	43292520	4	4	9	1	0	0	0	0	0	1	0	0	1473	1291	45	3	1862	3	BMS1	10	43292520	Nonsense_Mutation	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	7394989	43292520	92242227	364	1903										
C10orf71	118461	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr10	50531426	50531426	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	tgaaaatagtgcttttgagtCatggaatgcccaccaaccaa	8	9	1	2	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	C10orf71-90	NM_001135196	exon3	c.C836A	p.S279X	TTGAGTCATGGAA	.	136	38	161	0	.	0	0	0	0	0	A	50531426	C	A	50531426	4	1	9	1	0	0	0	0	0	1	0	0	1618	838	29	3	838	3	C10orf71	10	50531426	Nonsense_Mutation	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	7238906	50531426	85003321	365	1904										
AGAP7	653268	bcgsc.ca	37	chr10	51464918	51464918	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	tgctgttggctaggtcattgCcaatagatgacataaccttc	9	9	1	2	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	.	NM_001077685	exon7	c.G1538T	p.G513V	TCATTGCCAATAG	.	116	16	137	0	.	17	9	8	0	0	A	51464918	C	A	51464918	3	1	9	1	0	0	0	0	1	0	0	0	373	739	26	3	457	3	AGAP7	10	51464918	Missense_Mutation	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	933492	51464918	84069829	366	1905										
DKK1	22943	broad.mit.edu	37	chr10	54076186	54076186	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	ccttgtcttcaaaaatgtatCacaccaaaggtaaggatgtt	7	8	3	0	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	DKK1-1083	NM_012242	exon3	c.C538A	p.H180N	ATGTATCACACCA	.	102	4	124	1	.	0	0	0	0	0	A	54076186	C	A	54076186	3	1	9	1	0	0	0	0	1	0	0	0	4555	826	29	3	548	3	DKK1	10	54076186	Missense_Mutation	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	2611268	54076186	81458561	367	1906										
ARID5B	84159	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr10	63845627	63845627	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	ctaaaagcaagaaagaaaaaGaaaatgccccaaagccccag	7	10	0	3	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	ARID5B-94	NM_032199	exon9	c.G1366T	p.E456X	GAAAAAGAAAATG	.	18	10	29	0	.	3	1	2	0	0	T	63845627	G	T	63845627	4	4	9	1	0	0	0	0	0	1	0	0	922	943	33	3	1400	3	ARID5B	10	63845627	Nonsense_Mutation	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	9769441	63845627	71689120	368	1907										
CDH23	64072	broad.mit.edu	37	chr10	73437259	73437259	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	tcatcatgctgattgccaggCtggactatgagctcatccag	10	11	3	2	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	CDH23-563	NM_022124	exon15	c.C1561A	p.L521M	GCCAGGCTGGACT	.	84	6	131	1	.	2	2	0	0	0	A	73437259	C	A	73437259	3	1	9	1	0	0	0	0	1	0	0	0	3114	796	28	3	1846	3	CDH23	10	73437259	Missense_Mutation	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	9591632	73437259	62097488	369	1908										
SEC24C	9632	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr10	75528805	75528805	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	tttggagctttctacatgagCaacacgacagatgtggagct	11	8	1	2	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	SEC24C-92	NM_198597	exon17	c.C2319A	p.S773R	CATGAGCAACACG	.	97	46	153	0	.	22	17	5	0	0	A	75528805	C	A	75528805	3	1	9	1	0	0	0	0	1	0	0	0	14031	709	25	3	2381	3	SEC24C	10	75528805	Missense_Mutation	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	2091546	75528805	60005942	370	1909										
KCNMA1	3778	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	78761184	78761184	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	caggcacggaaactggtggaGcaatcattaacagagacaga	12	8	1	2	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	KCNMA1-93	NM_001161352	exon19	c.C2247A	p.C749X	GGTGGAGCAATCA	.	152	19	208	2	.	0	0	0	0	0	T	78761184	G	T	78761184	4	4	9	1	0	0	0	0	0	1	0	0	8094	963	34	3	1659	3	KCNMA1	10	78761184	Nonsense_Mutation	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	3232379	78761184	56773563	371	1910										
CYP2C9	1559	bcgsc.ca	37	chr10	96748656	96748656	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	ggcatggagctgtttttattCctgacctccattttacagaa	8	9	0	2	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	CYP2C9-96	NM_000771	exon9	c.C1344A	p.F448L	TTTATTCCTGACC	.	96	46	141	4	.	0	0	0	0	0	A	96748656	C	A	96748656	3	1	9	1	0	0	0	0	1	0	0	0	4174	854	30	3	1378	3	CYP2C9	10	96748656	Missense_Mutation	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	17987472	96748656	38786091	372	1911										
RRP12	23223	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	99126277	99126277	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	cgccctctttcagccatgccCggctcctctgtcgtgccagc	9	19	3	0	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	RRP12-92	NM_015179	exon28	c.G3317T	p.R1106L	CATGCCCGGCTCC	.	58	10	75	0	.	60	56	4	0	0	A	99126277	C	A	99126277	3	1	9	1	0	0	0	0	1	0	0	0	13721	652	23	2	604	2	RRP12	10	99126277	Missense_Mutation	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	2377621	99126277	36408470	373	1912										
NFKB2	4791	hgsc.bcm.edu	37	chr10	104159196	104159196	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	ggggaggaagccgcggagccAagcgccccctccaggacccc	15	17	0	0	rs4919633	byfrequency	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	NFKB2-522	NM_001077494	exon13	c.A1269G	p.P423P	GGAGCCAAGCGCC	.	4	4	0	0	A|0.009;G|0.991	9	0	9	0	0	G	104159196	A	G	104159196	2	3	9	1	0	0	0	0	0	0	0	1	10405	117	5	4		4	NFKB2	10	104159196	Silent	SNP	A	TCGA-OR-A5JA-01A-11D-A29I-10	5032919	104159196	31375551	374	1913										
AS3MT	57412	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	104638614	104638614	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	ttctatttttaggtgactgtCgttttgtttctgcaacattt	7	6	2	1	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	AS3MT-44	NM_020682	exon9	c.C751A	p.R251S	GACTGTCGTTTTG	.	96	17	128	0	.	20	15	5	0	0	A	104638614	C	A	104638614	3	1	9	1	0	0	0	0	1	0	0	0	1006	884	31	2	785	2	AS3MT	10	104638614	Missense_Mutation	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	479418	104638614	30896133	375	1914										
TACC2	10579	ucsc.edu;bcgsc.ca;mdanderson.org	37	chr10	123846988	123846988	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	gacccttgacacgcttggggGtgaaaggagacccggagtca	15	10	1	3	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	TACC2-296	NM_206862	exon4	c.G4973T	p.G1658V	TTGGGGGTGAAAG	.	165	35	216	2	.	0	0	0	0	0	T	123846988	G	T	123846988	3	4	9	1	0	0	0	0	1	0	0	0	15539	1261	44	3	4983	3	TACC2	10	123846988	Missense_Mutation	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	19208374	123846988	11687759	376	1915										
MKI67	4288	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr10	129903482	129903482	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	ctcatgagtcgtgggcttgtCagtgcatattggtgtctgga	14	7	3	1	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	MKI67-519	NM_002417	exon13	c.G6622T	p.D2208Y	GCTTGTCAGTGCA	.	158	68	149	1	.	6	2	4	0	0	A	129903482	C	A	129903482	3	1	9	1	0	0	0	0	1	0	0	0	9626	826	29	3	3160	3	MKI67	10	129903482	Missense_Mutation	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	6056494	129903482	5631265	377	1916										
MTG1	92170	hgsc.bcm.edu	37	chr10	135207754	135207754	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	accccgcgcgcgctgtgcagCgccgcccaggccgcctggcg	15	20	0	0	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	MTG1-91	NM_138384	exon1	c.C30G	p.S10R	GTGCAGCGCCGCC	.	32	29	1	0	.	18	0	18	0	0	G	135207754	C	G	135207754	3	3	9	1	0	0	0	0	1	0	0	0	9954	767	27	2	32	2	MTG1	10	135207754	Missense_Mutation	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	5304272	135207754	326993	378	1917										
MUC5B	727897	bcgsc.ca	37	chr11	1262202	1262202	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	tttgagacgtttgaaaacctGaggcagagagggtaccaggt	14	6	0	4	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	.	NM_002458	exon31	c.G4092T	p.L1364L	AAACCTGAGGCAG	.	102	24	92	2	.	0	0	0	0	0	T	1262202	G	T	1262202	2	4	9	1	0	0	0	0	0	0	0	1	10007	1277	45	3		3	MUC5B	11	1262202	Silent	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10		1262202	133744314	379	1918										
OR51G1	79324	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	4945010	4945010	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	tgctagagcaggccagcttcAtgatctccaggtgaagacaa	11	10	2	4	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	OR51G1-70	NM_001005237	exon1	c.T560C	p.M187T	AGCTTCATGATCT	.	89	15	85	0	.	0	0	0	0	0	G	4945010	A	G	4945010	3	3	9	1	0	0	0	0	1	0	0	0	11127	217	8	4	407	4	OR51G1	11	4945010	Missense_Mutation	SNP	A	TCGA-OR-A5JA-01A-11D-A29I-10	3682808	4945010	130061506	380	1919										
OR51B2	79345	bcgsc.ca	37	chr11	5345495	5345495	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	agccctggaaagccagtcagCaaaaaaggggctgcagtaat	12	9	1	0	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	OR51B2-71	NM_033180	exon1	c.G33T	p.L11F	AGTCAGCAAAAAA	.	262	13	314	3	.	0	0	0	0	0	A	5345495	C	A	5345495	3	1	9	1	0	0	0	0	1	0	0	0	11118	709	25	3	909	3	OR51B2	11	5345495	Missense_Mutation	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	400485	5345495	129661021	381	1920										
OR51I2	390064	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	5475467	5475467	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	acatatcctggctgtacttgCattttatgtgccaatgattg	8	8	0	1	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	OR51I2-72	NM_001004754	exon1	c.C749A	p.A250E	TACTTGCATTTTA	.	129	20	175	0	.	0	0	0	0	0	A	5475467	C	A	5475467	3	1	9	1	0	0	0	0	1	0	0	0	11130	710	25	3	751	3	OR51I2	11	5475467	Missense_Mutation	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	129972	5475467	129531049	382	1921										
UBQLN3	50613	broad.mit.edu;bcgsc.ca	37	chr11	5530029	5530029	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	atctgtgtacatagtgcaaaGcacattgtagccaccaggaa	9	9	1	0	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	UBQLN3-93	NM_017481	exon2	c.C760A	p.L254I	TGCAAAGCACATT	.	102	5	99	0	.	0	0	0	0	0	T	5530029	G	T	5530029	3	4	9	1	0	0	0	0	1	0	0	0	16936	971	34	3	1211	3	UBQLN3	11	5530029	Missense_Mutation	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	54562	5530029	129476487	383	1922										
PDE3B	5140	broad.mit.edu;bcgsc.ca	37	chr11	14865507	14865507	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	tggctctatacgtggcagctGccatgcatgattatgatcac	10	10	2	2	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	PDE3B-90	NM_000922	exon12	c.G2455T	p.A819S	GCAGCTGCCATGC	.	80	71	92	2	.	0	0	0	0	0	T	14865507	G	T	14865507	3	4	9	1	0	0	0	0	1	0	0	0	11667	1319	46	3	2501	3	PDE3B	11	14865507	Missense_Mutation	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	9335478	14865507	120141009	384	1923										
SPTY2D1	144108	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	18636678	18636678	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	cgagcaacccctgtgctgggCtgcccaggggctgagctaga	15	13	0	2	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	SPTY2D1-90	NM_194285	exon3	c.G1143T	p.Q381H	GCTGGGCTGCCCA	.	76	14	110	1	.	4	4	0	0	0	A	18636678	C	A	18636678	3	1	9	1	0	0	0	0	1	0	0	0	15163	796	28	3	930	3	SPTY2D1	11	18636678	Missense_Mutation	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	3771171	18636678	116369838	385	1924										
NELL1	4745	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	20907034	20907034	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	tccagataccaaccttccccCaggaatcaatttatggcttg	6	13	1	1	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	NELL1-155	NM_006157	exon5	c.C551A	p.P184Q	TTCCCCCAGGAAT	.	77	35	81	0	.	1	1	0	0	0	A	20907034	C	A	20907034	3	1	9	1	0	0	0	0	1	0	0	0	10362	594	21	3	569	3	NELL1	11	20907034	Missense_Mutation	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	2270356	20907034	114099482	386	1925										
LUZP2	338645	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	24784833	24784833	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	gttgaaagaaagagcaaaatGatccgagacctccagaatga	10	7	0	7	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	LUZP2-92	NM_001252010	exon5	c.G375A	p.M125I	CAAAATGATCCGA	.	134	24	186	1	.	0	0	0	0	0	A	24784833	G	A	24784833	3	1	9	1	0	0	0	0	1	0	0	0	9114	1290	45	3	393	3	LUZP2	11	24784833	Missense_Mutation	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	3877799	24784833	110221683	387	1926										
CCDC73	493860	broad.mit.edu;ucsc.edu;mdanderson.org	37	chr11	32739646	32739646	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	tgccatttaagttcctgtgtCtccacaataattttaccaat	4	10	1	0	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	CCDC73-91	NM_001008391	exon3	c.G183T	p.M61I	CTGTGTCTCCACA	.	10	7	11	0	.	0	0	0	0	0	A	32739646	C	A	32739646	3	1	9	1	0	0	0	0	1	0	0	0	2852	912	32	3	3120	3	CCDC73	11	32739646	Missense_Mutation	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	7954813	32739646	102266870	388	1927										
RAG1	5896	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	36597790	36597790	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	gcgcttccggaaaatgaatgCcaggcagtccaaatgctatg	11	10	0	1	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	RAG1-230	NM_000448	exon2	c.C2936A	p.A979D	TGAATGCCAGGCA	.	41	37	57	0	.	0	0	0	0	0	A	36597790	C	A	36597790	3	1	9	1	0	0	0	0	1	0	0	0	13038	739	26	3	2938	3	RAG1	11	36597790	Missense_Mutation	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	3858144	36597790	98408726	389	1928										
DGKZ	8525	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	chr11	46397072	46397072	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	aggccatcccggtgcaggtgGatggcgagccctgcaagctt	15	12	0	0	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	DGKZ-676	NM_001105540	exon21	c.G2365T	p.D789Y	CAGGTGGATGGCG	.	93	48	25	0	.	6	2	4	0	0	T	46397072	G	T	46397072	3	4	9	1	0	0	0	0	1	0	0	0	4485	1174	41	3	2890	3	DGKZ	11	46397072	Missense_Mutation	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	9799282	46397072	88609444	390	1929										
OR4X2	119764	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	48267186	48267186	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	tgtgacctagttccccttctCaaacttgcctgctctgacac	6	15	2	2	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	OR4X2-68	NM_001004727	exon1	c.C531A	p.L177L	CCTTCTCAAACTT	.	70	37	121	0	.	0	0	0	0	0	A	48267186	C	A	48267186	2	1	9	1	0	0	0	0	0	0	0	1	11114	813	29	3		3	OR4X2	11	48267186	Silent	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	1870114	48267186	86739330	391	1930										
OR4A16	81327	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	55110948	55110948	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	ctgtgataaaatcgctatttCcttgtcagcttgcatgggtc	9	9	1	1	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	OR4A16-69	NM_001005274	exon1	c.C272T	p.S91F	CTATTTCCTTGTC	.	85	13	138	1	.	0	0	0	0	0	T	55110948	C	T	55110948	3	4	9	1	0	0	0	0	1	0	0	0	11070	855	30	3	274	3	OR4A16	11	55110948	Missense_Mutation	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	6843762	55110948	79895568	392	1931										
OR5M10	390167	broad.mit.edu;bcgsc.ca	37	chr11	56344908	56344908	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	agagaagacactgtgtgaagCatccagcgtaggagatggtc	14	7	0	4	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	.	NM_001004741	exon1	c.G290T	p.C97F	GTGAAGCATCCAG	.	181	9	274	1	.	0	0	0	0	0	A	56344908	C	A	56344908	3	1	9	1	0	0	0	0	1	0	0	0	11202	710	25	3	661	3	OR5M10	11	56344908	Missense_Mutation	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	1233960	56344908	78661608	393	1932										
TNKS1BP1	85456	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	57087809	57087809	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	gatctcttccaccgtggtggCcgcgaagcgctctgaggctg	14	13	2	1	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	TNKS1BP1-91	NM_033396	exon3	c.G472T	p.A158S	TGGTGGCCGCGAA	.	60	28	59	0	.	17	9	8	0	0	A	57087809	C	A	57087809	3	1	9	1	0	0	0	0	1	0	0	0	16357	739	26	3	4753	3	TNKS1BP1	11	57087809	Missense_Mutation	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	742901	57087809	77918707	394	1933										
OR5B12	390191	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	58206901	58206901	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	gatggaaactgcagtaaggtGggaagcacaagtagaaaagg	15	4	0	1	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	OR5B12-68	NM_001004733	exon1	c.C724A	p.H242N	TAAGGTGGGAAGC	.	204	82	237	1	.	0	0	0	0	0	T	58206901	G	T	58206901	3	4	9	1	0	0	0	0	1	0	0	0	11177	1348	47	3	224	3	OR5B12	11	58206901	Missense_Mutation	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	1119092	58206901	76799615	395	1934										
TMEM132A	54972	hgsc.bcm.edu	37	chr11	60701987	60701987	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	gaacccgctgcagaggcgtcGgatgaggccgagcggcgcgc	18	13	0	2	rs7715	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	TMEM132A-227	NM_017870	exon9	c.G1590A	p.S530S	GGCGTCGGATGAG	.	4	4	0	0	G|0.581;A|0.419	54	0	54	0	0	A	60701987	G	A	60701987	2	1	9	1	0	0	0	0	0	0	0	1	16082	1103	39	1		1	TMEM132A	11	60701987	Silent	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	2495086	60701987	74304529	396	1935										
MEN1	4221	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	64574692	64574692	+	Splice_Site	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	tagagcagccagagcagcttCtaggagccgaaggagagagt	15	8	1	3	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	MEN1-3017	NM_130804	exon7	c.799-1G>T	.	CAGCTTCTAGGAG	.	26	10	34	0	.	2	0	2	0	0	A	64574692	C	A	64574692	5	1	9	1	0	0	0	0	0	0	1	0	9500	927	32	3	1073	3	MEN1	11	64574692	Splice_Site	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	3872705	64574692	70431824	397	1936										
PACS1	55690	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	66001334	66001334	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	agctacctgagctccatcctCaggttctttgtcaagtccct	7	14	3	1	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	PACS1-74	NM_018026	exon16	c.C1917A	p.L639L	CATCCTCAGGTTC	.	132	70	143	0	.	8	4	4	0	0	A	66001334	C	A	66001334	2	1	9	1	0	0	0	0	0	0	0	1	11401	813	29	3		3	PACS1	11	66001334	Silent	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	1426642	66001334	69005182	398	1937										
CD248	57124	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr11	66083700	66083700	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	gtcctcgcaactgcgcccgtCtgctgccagccggaagccct	11	18	1	0	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	CD248-154	NM_020404	exon1	c.G799T	p.D267Y	GCCCGTCTGCTGC	.	124	9	74	0	.	9	9	0	0	0	A	66083700	C	A	66083700	3	1	9	1	0	0	0	0	1	0	0	0	2995	913	32	3	1478	3	CD248	11	66083700	Missense_Mutation	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	82366	66083700	68922816	399	1938										
PPP1CA	5499	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr11	67167109	67167110	+	Frame_Shift_Del	DEL	CA	CA	-													0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	agcagtcagtgaaggttttcCacagtttgatgttgtagcgt					novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	CA	CA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	PPP1CA-659	NM_001008709	exon4	c.478_479del	p.160_160del	GTTTTCCACAGTT	.	120	20	182	0	.	0	0	0	0	0	-	67167110	CA	-	67167109	7	5	9	1	0	1	0	1	0	0	0	0	12381	595	21	0	562	0	PPP1CA	11	67167109	Frame_Shift_Del	DEL	CA	TCGA-OR-A5JA-01A-11D-A29I-10	1083409	67167109	67839407	400	1939										
FGF19	9965	hgsc.bcm.edu	37	chr11	69518485	69518485	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	caggaagcagctggagagccCgtgggggccggaggtgtaca	19	9	0	1	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	FGF19-658	NM_005117	exon1	c.G160T	p.G54W	AGAGCCCGTGGGG	.	9	9	2	0	.	0	0	0	0	0	A	69518485	C	A	69518485	3	1	9	1	0	0	0	0	1	0	0	0	5866	652	23	2	502	2	FGF19	11	69518485	Missense_Mutation	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	2351376	69518485	65488031	401	1940										
NADSYN1	55191	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	71184625	71184625	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	ctgcctgcagcccgcacatcGacatgggcctggatggcgtg	14	14	0	0	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	NADSYN1-92	NM_018161	exon8	c.G559T	p.D187Y	CACATCGACATGG	.	131	65	139	1	.	0	0	0	0	0	T	71184625	G	T	71184625	3	4	9	1	0	0	0	0	1	0	0	0	10166	1058	37	2	589	2	NADSYN1	11	71184625	Missense_Mutation	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	1666140	71184625	63821891	402	1941										
RNF169	254225	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	74546991	74546991	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	gcagatcaaaaagaccctttCaaaagccactcttacctctc	4	14	4	2	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	RNF169-69	NM_001098638	exon6	c.C1343A	p.S448X	CCCTTTCAAAAGC	.	46	10	57	0	.	3	3	0	0	0	A	74546991	C	A	74546991	4	1	9	1	0	0	0	0	0	1	0	0	13495	838	29	3	1365	3	RNF169	11	74546991	Nonsense_Mutation	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	3362366	74546991	60459525	403	1942										
MYO7A	4647	broad.mit.edu	37	chr11	76905570	76905570	+	Splice_Site	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	ccatcgccgcccacaagaagGtagaagggctgagaggagtc	14	11	0	3	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	MYO7A-138	NM_000260	exon32	c.4323+1G>T	.	AAGAAGGTAGAAG	.	82	3	87	0	.	0	0	0	0	0	T	76905570	G	T	76905570	5	4	9	1	0	0	0	0	0	0	1	0	10110	1275	44	3	4480	3	MYO7A	11	76905570	Splice_Site	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	2358579	76905570	58100946	404	1943										
USP35	57558	broad.mit.edu	37	chr11	77920580	77920580	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	tccgcccgaggagcccccggCcccaagttcaacctctgtgg	11	18	2	0	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	USP35-637	NM_020798	exon10	c.C1679A	p.A560D	CCCCGGCCCCAAG	.	109	4	133	0	.	10	10	0	0	0	A	77920580	C	A	77920580	3	1	9	1	0	0	0	0	1	0	0	0	17104	739	26	3	1713	3	USP35	11	77920580	Missense_Mutation	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	1015010	77920580	57085936	405	1944										
DLG2	1740	bcgsc.ca	37	chr11	83641481	83641481	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	tagtgcctgggagaagcaggCttatcacatagtttgttcac	11	8	2	1	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	DLG2-96	NM_001142699	exon15	c.G1386T	p.K462N	AGCAGGCTTATCA	.	172	39	210	4	.	2	2	0	0	0	A	83641481	C	A	83641481	3	1	9	1	0	0	0	0	1	0	0	0	4566	796	28	3	1647	3	DLG2	11	83641481	Missense_Mutation	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	5720901	83641481	51365035	406	1945										
EXPH5	23086	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	108380726	108380726	+	Silent	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	ttgttgacagagaattcattCccaagggtcagtcgactcag	10	9	3	2	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	EXPH5-95	NM_015065	exon6	c.G5508T	p.G1836G	TTCATTCCCAAGG	.	70	35	92	0	.	0	0	0	0	0	A	108380726	C	A	108380726	2	1	9	1	0	0	0	0	0	0	0	1	5335	842	30	3		3	EXPH5	11	108380726	Silent	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	24739245	108380726	26625790	407	1946										
OR10G4	390264	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	123886949	123886949	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	ctatgtgtccatcgtctgttCcatcctgcggatccgcacct	8	15	1	0	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	OR10G4-93	NM_001004462	exon1	c.C668A	p.S223Y	TCTGTTCCATCCT	.	221	97	285	1	.	0	0	0	0	0	A	123886949	C	A	123886949	3	1	9	1	0	0	0	0	1	0	0	0	10930	855	30	3	670	3	OR10G4	11	123886949	Missense_Mutation	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	15506223	123886949	11119567	408	1947										
BARX2	8538	broad.mit.edu;bcgsc.ca	37	chr11	129306690	129306690	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	cgctcctctcggtgatcaccCgccagcccactgtcatctcc	7	20	4	1	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	BARX2-90	NM_003658	exon2	c.C232A	p.R78S	ATCACCCGCCAGC	.	138	11	159	1	.	0	0	0	0	0	A	129306690	C	A	129306690	3	1	9	1	0	0	0	0	1	0	0	0	1317	652	23	2	238	2	BARX2	11	129306690	Missense_Mutation	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	5419741	129306690	5699826	409	1948										
ADAMTS8	11095	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	130275863	130275863	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	cttcaccaagatgtcctgctCtatggcagagatggccaggt	11	11	2	2	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	ADAMTS8-226	NM_007037	exon9	c.G2260T	p.E754X	CCTGCTCTATGGC	.	94	46	99	1	.	0	0	0	0	0	A	130275863	C	A	130275863	4	1	9	1	0	0	0	0	0	1	0	0	272	922	32	3	413	3	ADAMTS8	11	130275863	Nonsense_Mutation	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	969173	130275863	4730653	410	1949										
IQSEC3	440073	hgsc.bcm.edu	37	chr12	247900	247900	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	gccgaggggcgggcgccggaGagcgcgggccccgggcccgg	23	15	0	1	rs7313003		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	IQSEC3-560	NM_001170738	exon4	c.G1371A	p.E457E	GCCGGAGAGCGCG	.	4	4	0	0	G|0.768;A|0.232	0	0	0	0	0	A	247900	G	A	247900	2	1	9	1	0	0	0	0	0	0	0	1	7840	933	33	3		3	IQSEC3	12	247900	Silent	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10		247900	133603995	411	1950										
CACNA2D4	93589	ucsc.edu;bcgsc.ca	37	chr12	1902879	1902879	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	caggcagcaggagtaggggcGgcgaggctgaggtgtccgag	21	8	0	1	rs145150489	alternate_allele	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	CACNA2D4-23	NM_172364	exon38	c.C3356A	p.P1119Q	AGGGGCGGCGAGG	.	379	57	179	3	G|0.998;A|0.002	1	1	0	0	0	T	1902879	G	T	1902879	3	4	9	1	0	0	0	0	1	0	0	0	2557	1116	39	2	61	2	CACNA2D4	12	1902879	Missense_Mutation	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	1654979	1902879	131949016	412	1951										
ANO2	57101	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr12	5685071	5685071	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	tccttcagctggctgacgttGaaaaaggagagggtgtggtt	15	6	1	3	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	ANO2-139	NM_020373	exon24	c.C2550A	p.F850L	GACGTTGAAAAAG	.	186	18	145	0	.	0	0	0	0	0	T	5685071	G	T	5685071	3	4	9	1	0	0	0	0	1	0	0	0	697	1281	45	3	458	3	ANO2	12	5685071	Missense_Mutation	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	3782192	5685071	128166824	413	1952										
CD163	9332	broad.mit.edu;bcgsc.ca	37	chr12	7653770	7653770	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	cagcatcttgttggtgagtaCagttactatgctttccccat	8	10	1	1	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	CD163-98	NM_203416	exon3	c.G422T	p.C141F	TGAGTACAGTTAC	.	169	8	133	1	.	2	2	0	0	0	A	7653770	C	A	7653770	3	1	9	1	0	0	0	0	1	0	0	0	2973	478	17	3	3104	3	CD163	12	7653770	Missense_Mutation	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	1968699	7653770	126198125	414	1953										
PHC1	1911	broad.mit.edu	37	chr12	9085175	9085175	+	Silent	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	atagccacctacacacagatCcagccccattcactgattca	4	16	2	2	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	PHC1-154	NM_004426	exon8	c.C1122A	p.I374I	ACAGATCCAGCCC	.	268	18	185	1	.	6	6	0	0	0	A	9085175	C	A	9085175	2	1	9	1	0	0	0	0	0	0	0	1	11845	845	30	3		3	PHC1	12	9085175	Silent	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	1431405	9085175	124766720	415	1954										
GABARAPL1	23710	broad.mit.edu;bcgsc.ca	37	chr12	10365807	10365807	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	agatccggaagaaatatccgGacagggtccccgtgagtgta	13	9	0	3	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	GABARAPL1-90	NM_031412	exon1	c.G79T	p.D27Y	TATCCGGACAGGG	.	258	71	123	2	.	121	68	53	0	0	T	10365807	G	T	10365807	3	4	9	1	0	0	0	0	1	0	0	0	6172	1174	41	3	81	3	GABARAPL1	12	10365807	Missense_Mutation	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	1280632	10365807	123486088	416	1955										
STYK1	55359	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	10777358	10777358	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	ctcgggtgtaaacttcataaGccaggcctaatccacagagc	9	12	1	1	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	STYK1-1379	NM_018423	exon8	c.C818A	p.A273D	TCATAAGCCAGGC	.	258	63	164	0	.	0	0	0	0	0	T	10777358	G	T	10777358	3	4	9	1	0	0	0	0	1	0	0	0	15396	971	34	3	466	3	STYK1	12	10777358	Missense_Mutation	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	411551	10777358	123074537	417	1956										
GPRC5D	55507	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	13102863	13102863	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	acaaacatcatacctctggtCatgatgagagtcacatactc	6	11	4	2	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	GPRC5D-90	NM_018654	exon1	c.G456T	p.M152I	TCTGGTCATGATG	.	271	38	171	1	.	0	0	0	0	0	A	13102863	C	A	13102863	3	1	9	1	0	0	0	0	1	0	0	0	6748	826	29	3	591	3	GPRC5D	12	13102863	Missense_Mutation	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	2325505	13102863	120749032	418	1957										
GRIN2B	2904	bcgsc.ca	37	chr12	13761624	13761624	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	gcagtgtagctggccaggaaGatgacagcaaagaaggccca	14	9	0	3	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	GRIN2B-231	NM_000834	exon9	c.C1923A	p.I641I	CAGGAAGATGACA	.	288	17	217	2	.	0	0	0	0	0	T	13761624	G	T	13761624	2	4	9	1	0	0	0	0	0	0	0	1	6801	932	33	3		3	GRIN2B	12	13761624	Silent	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	658761	13761624	120090271	419	1958										
PLEKHA5	54477	bcgsc.ca	37	chr12	19475524	19475524	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	cagataacccagcagccattCagacagtggtgttacaaagg	10	10	1	2	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	PLEKHA5-227	NM_001256470	exon20	c.C2371A	p.Q791K	GCCATTCAGACAG	.	210	20	173	2	.	17	17	0	0	0	A	19475524	C	A	19475524	3	1	9	1	0	0	0	0	1	0	0	0	12088	827	29	3	2245	3	PLEKHA5	12	19475524	Missense_Mutation	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	5713900	19475524	114376371	420	1959										
LRRK2	120892	broad.mit.edu	37	chr12	40689345	40689345	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	atgaactaagagatattgatGccctaagccagaaatgctgt	9	7	0	4	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	LRRK2-533	NM_198578	exon23	c.G2995T	p.A999S	ATTGATGCCCTAA	.	93	7	97	2	.	2	0	2	0	0	T	40689345	G	T	40689345	3	4	9	1	0	0	0	0	1	0	0	0	9060	1319	46	3	3085	3	LRRK2	12	40689345	Missense_Mutation	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	21213821	40689345	93162550	421	1960										
RND1	27289	broad.mit.edu	37	chr12	49254807	49254807	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	taggagatgggcgcctgcttCtggtgggacagctccatcag	15	10	2	1	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	RND1-228	NM_014470	exon4	c.G426T	p.Q142H	CTGCTTCTGGTGG	.	122	15	93	2	.	0	0	0	0	0	A	49254807	C	A	49254807	3	1	9	1	0	0	0	0	1	0	0	0	13454	912	32	3	280	3	RND1	12	49254807	Missense_Mutation	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	8565462	49254807	84597088	422	1961										
KRT74	121391	broad.mit.edu;bcgsc.ca	37	chr12	52967318	52967318	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	gccactggcccggccccctcCatacccagagccaggcctga	10	20	0	2	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	KRT74-92	NM_175053	exon1	c.G244T	p.G82X	CCCCTCCATACCC	.	98	6	68	0	.	0	0	0	0	0	A	52967318	C	A	52967318	4	1	9	1	0	0	0	0	0	1	0	0	8508	603	21	3	1381	3	KRT74	12	52967318	Nonsense_Mutation	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	3712511	52967318	80884577	423	1962										
KRT72	140807	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	52992834	52992834	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	ttcctgcagttgttcaagtcCagctgctgtaggaggttcca	11	10	1	0	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	KRT72-96	NM_001146225	exon2	c.G489T	p.L163L	CAAGTCCAGCTGC	.	119	31	103	1	.	0	0	0	0	0	A	52992834	C	A	52992834	2	1	9	1	0	0	0	0	0	0	0	1	8506	581	21	3		3	KRT72	12	52992834	Silent	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	25516	52992834	80859061	424	1963										
KRT3	3850	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	53189266	53189266	+	Silent	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	acttgcccaatctgggggtcGatctccacattgaggggctg	13	11	2	1	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	KRT3-90	NM_057088	exon1	c.C561A	p.I187I	GGGGTCGATCTCC	.	204	23	129	0	.	0	0	0	0	0	T	53189266	G	T	53189266	2	4	9	1	0	0	0	0	0	0	0	1	8487	1048	37	2		2	KRT3	12	53189266	Silent	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	196432	53189266	80662629	425	1964										
GPR84	53831	ucsc.edu	37	chr12	54756471	54756471	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	gagcctatggaaactccgggGccctctttttaaaatggagc	11	10	1	0	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	GPR84-523	NM_020370	exon2	c.C1165A	p.P389T	TCCGGGGCCCTCT	.	372	53	221	4	.	0	0	0	0	0	T	54756471	G	T	54756471	3	4	9	1	0	0	0	0	1	0	0	0	6734	1203	42	3	29	3	GPR84	12	54756471	Missense_Mutation	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	1567205	54756471	79095424	426	1965										
LACRT	90070	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	55025610	55025610	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	tctgttagtaagatacttttCtccactatggattctaattt	5	7	3	1	rs201410599	alternate_allele	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	LACRT-90	NM_033277	exon4	c.G267T	p.E89D	ACTTTTCTCCACT	.	108	13	73	0	C|0.999;T|0.001	0	0	0	0	0	A	55025610	C	A	55025610	3	1	9	1	0	0	0	0	1	0	0	0	8618	912	32	3	157	3	LACRT	12	55025610	Missense_Mutation	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	269139	55025610	78826285	427	1966										
ESYT1	23344	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	56522216	56522216	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	cgcaaagccagacccaggttCtgggggccaacctgctggcc	13	15	1	1	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	ESYT1-95	NM_015292	exon1	c.C113A	p.S38Y	CAGGTTCTGGGGG	.	91	22	39	0	.	26	18	8	0	0	A	56522216	C	A	56522216	3	1	9	1	0	0	0	0	1	0	0	0	5277	913	32	3	115	3	ESYT1	12	56522216	Missense_Mutation	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	1496606	56522216	77329679	428	1967										
PAN2	9924	ucsc.edu;bcgsc.ca	37	chr12	56716450	56716450	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	ttgatgtgagccaccaggctGccccctgtgcgtgagtccag	13	13	0	3	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	PAN2-702	NM_001127460	exon18	c.C2598A	p.G866G	CAGGCTGCCCCCT	.	178	44	124	2	.	12	8	4	0	0	T	56716450	G	T	56716450	2	4	9	1	0	0	0	0	0	0	0	1	11443	1306	46	3		3	PAN2	12	56716450	Silent	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	194234	56716450	77135445	429	1968										
MIP	4284	broad.mit.edu;bcgsc.ca	37	chr12	56845152	56845152	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	gtttggcacccttgaggacaGacagtctctcagaaatactc	9	11	2	3	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	MIP-91	NM_012064	exon4	c.C704A	p.S235Y	AGGACAGACAGTC	.	211	20	161	2	.	4	4	0	0	0	T	56845152	G	T	56845152	3	4	9	1	0	0	0	0	1	0	0	0	9619	942	33	3	91	3	MIP	12	56845152	Missense_Mutation	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	128702	56845152	77006743	430	1969										
ZFC3H1	196441	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	72017939	72017939	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	taaatatgtgcagctgaactCtaaacaaaagagcctctaaa	6	8	2	2	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	ZFC3H1-138	NM_144982	exon23	c.G4451T	p.R1484I	TGAACTCTAAACA	.	78	28	52	0	.	6	2	4	0	0	A	72017939	C	A	72017939	3	1	9	1	0	0	0	0	1	0	0	0	17670	913	32	3	1570	3	ZFC3H1	12	72017939	Missense_Mutation	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	15172787	72017939	61833956	431	1970										
GLIPR1L1	256710	broad.mit.edu	37	chr12	75737704	75737704	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	tatcatgctccagagtctgtGgccattatacacaggtaaat	8	9	2	1	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	GLIPR1L1-90	NM_152779	exon2	c.G406T	p.G136C	GTCTGTGGCCATT	.	120	3	74	0	.	0	0	0	0	0	T	75737704	G	T	75737704	3	4	9	1	0	0	0	0	1	0	0	0	6462	1348	47	3	412	3	GLIPR1L1	12	75737704	Missense_Mutation	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	3719765	75737704	58114191	432	1971										
GLIPR1L2	144321	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	75804245	75804245	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	agctttatcacggactgctaGagcatggggaaaaaaatgtt	11	6	1	1	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	GLIPR1L2-91	NM_152436	exon2	c.G266T	p.R89I	CTGCTAGAGCATG	.	210	49	131	0	.	0	0	0	0	0	T	75804245	G	T	75804245	3	4	9	1	0	0	0	0	1	0	0	0	6463	942	33	3	272	3	GLIPR1L2	12	75804245	Missense_Mutation	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	66541	75804245	58047650	433	1972										
ZDHHC17	23390	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	77209691	77209691	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	gtttcagttaaccttggtgaCaagtatcacaaaaacactgc	7	9	2	1	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	.	NM_015336	exon7	c.C663A	p.D221E	TGGTGACAAGTAT	.	417	41	276	1	.	2	2	0	0	0	A	77209691	C	A	77209691	3	1	9	1	0	0	0	0	1	0	0	0	17644	477	17	3	689	3	ZDHHC17	12	77209691	Missense_Mutation	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	1405446	77209691	56642204	434	1973										
SLC6A15	55117	broad.mit.edu;bcgsc.ca	37	chr12	85266932	85266932	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	ctgcaaacaccaccaatgttGccaggacagaagtgaaaaaa	8	10	0	2	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	SLC6A15-93	NM_182767	exon7	c.C1043A	p.A348E	AATGTTGCCAGGA	.	216	13	168	2	.	0	0	0	0	0	T	85266932	G	T	85266932	3	4	9	1	0	0	0	0	1	0	0	0	14713	1319	46	3	1173	3	SLC6A15	12	85266932	Missense_Mutation	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	8057241	85266932	48584963	435	1974										
DCN	1634	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	91545457	91545457	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	gtacttatgctctgccagccCaccaggtactctggtaagct	9	13	2	0	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	DCN-555	NM_001920	exon7	c.G859T	p.G287W	CCAGCCCACCAGG	.	160	17	114	0	.	8	8	0	0	0	A	91545457	C	A	91545457	3	1	9	1	0	0	0	0	1	0	0	0	4303	594	21	3	228	3	DCN	12	91545457	Missense_Mutation	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	6278525	91545457	42306438	436	1975										
DCN	1634	broad.mit.edu	37	chr12	91546934	91546934	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	tctgctgattttgttgccatCaagatgtaattccgtaaggg	10	7	2	2	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	DCN-555	NM_001920	exon6	c.G685T	p.D229Y	TGCCATCAAGATG	.	146	16	129	2	.	8	8	0	0	0	A	91546934	C	A	91546934	3	1	9	1	0	0	0	0	1	0	0	0	4303	826	29	3	406	3	DCN	12	91546934	Missense_Mutation	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	1477	91546934	42304961	437	1976										
PLEKHG7	440107	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	93149662	93149662	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	aaatttagatatctacaggaGattatagtgtggccaccgct	9	7	1	2	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	PLEKHG7-23	NM_001004330	exon7	c.G552T	p.E184D	ACAGGAGATTATA	.	142	45	84	0	.	0	0	0	0	0	T	93149662	G	T	93149662	3	4	9	1	0	0	0	0	1	0	0	0	12104	933	33	3	574	3	PLEKHG7	12	93149662	Missense_Mutation	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	1602728	93149662	40702233	438	1977										
NR2C1	7181	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr12	95434275	95434275	+	Silent	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	agagcctggaaagaaggaatCgaaagtgcccagtgcattga	13	7	0	3	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	NR2C1-187	NM_001032287	exon10	c.G1230T	p.S410S	AGGAATCGAAAGT	.	241	21	221	0	.	13	12	1	0	0	A	95434275	C	A	95434275	2	1	9	1	0	0	0	0	0	0	0	1	10651	871	31	2		2	NR2C1	12	95434275	Silent	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	2284613	95434275	38417620	439	1978										
USP44	84101	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	95911959	95911959	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	gatttcattagacgaggtatCagcgtcttcattgggatgtt	11	6	4	1	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	USP44-658	NM_032147	exon6	c.G2110A	p.D704N	AGGTATCAGCGTC	.	106	17	103	0	.	0	0	0	0	0	T	95911959	C	T	95911959	3	4	9	1	0	0	0	0	1	0	0	0	17113	826	29	3	32	3	USP44	12	95911959	Missense_Mutation	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	477684	95911959	37939936	440	1979										
PRDM4	11108	broad.mit.edu;bcgsc.ca	37	chr12	108133237	108133237	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	cagtaatcacacttaagattCttctccccagtgtggataac	6	11	3	1	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	PRDM4-154	NM_012406	exon11	c.G2016T	p.K672N	AAGATTCTTCTCC	.	173	20	142	1	.	34	32	2	0	0	A	108133237	C	A	108133237	3	1	9	1	0	0	0	0	1	0	0	0	12491	912	32	3	397	3	PRDM4	12	108133237	Missense_Mutation	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	12221278	108133237	25718658	441	1980										
SART3	9733	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	108931880	108931880	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	aactccatgtctctccatggCcaagaggtaccgactccata	7	14	1	1	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	SART3-91	NM_014706	exon8	c.G1162C	p.A388P	CCATGGCCAAGAG	.	183	41	85	1	.	18	8	10	0	0	G	108931880	C	G	108931880	3	3	9	1	0	0	0	0	1	0	0	0	13882	739	26	3	1777	3	SART3	12	108931880	Missense_Mutation	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	798643	108931880	24920015	442	1981										
ACACB	32	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	109660636	109660636	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	tcccacctcccctcctacgaGctgcggcataaccaggtgga	9	17	0	0	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	ACACB-98	NM_001093	exon25	c.G3711T	p.E1237D	CTACGAGCTGCGG	.	135	47	142	1	.	11	6	5	0	0	T	109660636	G	T	109660636	3	4	9	1	0	0	0	0	1	0	0	0	107	962	34	3	3809	3	ACACB	12	109660636	Missense_Mutation	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	728756	109660636	24191259	443	1982										
TRPV4	59341	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	110230204	110230204	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	catgaagagcaagtagacgaGcaggaatcggaaaaggtcct	13	7	0	3	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	TRPV4-94	NM_021625	exon12	c.C1855A	p.L619I	AGACGAGCAGGAA	.	118	28	107	2	.	1	1	0	0	0	T	110230204	G	T	110230204	3	4	9	1	0	0	0	0	1	0	0	0	16636	971	34	3	780	3	TRPV4	12	110230204	Missense_Mutation	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	569568	110230204	23621691	444	1983										
HVCN1	84329	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	111098996	111098996	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	ctgtgggagctgaacagtttCctcaacatgcccctgaagtc	10	12	1	2	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	HVCN1-91	NM_032369	exon4	c.G279T	p.R93S	CAGTTTCCTCAAC	.	301	76	253	0	.	2	2	0	0	0	A	111098996	C	A	111098996	3	1	9	1	0	0	0	0	1	0	0	0	7483	854	30	3	562	3	HVCN1	12	111098996	Missense_Mutation	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	868792	111098996	22752899	445	1984										
MAP1LC3B2	643246	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	117013934	117013934	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	accatgtcaacatgagtgagCtcatcaagataattagaagg	9	7	3	4	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	MAP1LC3B2-68	NM_001085481	exon2	c.C187A	p.L63I	AGTGAGCTCATCA	.	424	124	373	0	.	248	247	1	0	0	A	117013934	C	A	117013934	3	1	9	1	0	0	0	0	1	0	0	0	9260	797	28	3	189	3	MAP1LC3B2	12	117013934	Missense_Mutation	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	5914938	117013934	16837961	446	1985										
GCN1L1	10985	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	120567240	120567240	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	gaggcagtgggtccttatttGcccaccagatcatcttctca	9	12	3	1	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	GCN1L1-94	NM_006836	exon57	c.C7730A	p.A2577E	TTATTTGCCCACC	.	112	14	131	0	.	68	54	14	0	0	T	120567240	G	T	120567240	3	4	9	1	0	0	0	0	1	0	0	0	6319	1319	46	3	293	3	GCN1L1	12	120567240	Missense_Mutation	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	3553306	120567240	13284655	447	1986										
SIRT4	23409	broad.mit.edu	37	chr12	120750304	120750304	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	cagactccccggggggtgctGcaagagcgtttccaagtcct	13	13	0	2	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	SIRT4-226	NM_012240	exon3	c.G543T	p.L181L	GGTGCTGCAAGAG	.	78	5	56	0	.	14	14	0	0	0	T	120750304	G	T	120750304	2	4	9	1	0	0	0	0	0	0	0	1	14375	1306	46	3		3	SIRT4	12	120750304	Silent	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	183064	120750304	13101591	448	1987										
MLXIP	22877	bcgsc.ca	37	chr12	122623075	122623075	+	Silent	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	cggcggctgcgggaggagatCgaggagctcaatgccaccat	16	11	1	1	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	MLXIP-92	NM_014938	exon14	c.C2361A	p.I787I	GGAGATCGAGGAG	.	196	16	138	2	.	15	14	1	0	0	A	122623075	C	A	122623075	2	1	9	1	0	0	0	0	0	0	0	1	9664	874	31	2		2	MLXIP	12	122623075	Silent	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	1872771	122623075	11228820	449	1988										
SBNO1	55206	broad.mit.edu	37	chr12	123782680	123782680	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	ggcaacgaagacctatttcaCaaactagccccaagcttgct	7	13	1	1	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	SBNO1-292	NM_001167856	exon30	c.G3884T	p.C1295F	ATTTCACAAACTA	.	113	7	99	1	.	29	29	0	0	0	A	123782680	C	A	123782680	3	1	9	1	0	0	0	0	1	0	0	0	13897	478	17	3	305	3	SBNO1	12	123782680	Missense_Mutation	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	1159605	123782680	10069215	450	1989										
DNAH10	196385	broad.mit.edu;ucsc.edu	37	chr12	124256213	124256213	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	acagagaggatgaagaaatgGacaaagagatttcagaaaaa	11	3	1	5	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	DNAH10-95	NM_207437	exon3	c.G181T	p.D61Y	GAAATGGACAAAG	.	89	10	98	2	.	0	0	0	0	0	T	124256213	G	T	124256213	3	4	9	1	0	0	0	0	1	0	0	0	4609	1174	41	3	191	3	DNAH10	12	124256213	Missense_Mutation	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	473533	124256213	9595682	451	1990										
DNAH10	196385	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	124317840	124317840	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	agatttgtggggccttttctGcaaactgttcacaaatggga	11	7	2	1	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	DNAH10-95	NM_207437	exon26	c.G4371T	p.L1457L	TTTTCTGCAAACT	.	191	40	180	1	.	0	0	0	0	0	T	124317840	G	T	124317840	2	4	9	1	0	0	0	0	0	0	0	1	4609	1306	46	3		3	DNAH10	12	124317840	Silent	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	61627	124317840	9534055	452	1991										
DNAH10	196385	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	124399087	124399087	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	gcctgctcacggatgatgttGagatcagcaggtgtgtggca	15	8	2	2	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	DNAH10-95	NM_207437	exon60	c.G10210T	p.E3404X	GATGTTGAGATCA	.	77	13	64	0	.	0	0	0	0	0	T	124399087	G	T	124399087	4	4	9	1	0	0	0	0	0	1	0	0	4609	1291	45	3	10448	3	DNAH10	12	124399087	Nonsense_Mutation	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	81247	124399087	9452808	453	1992										
DHX37	57647	broad.mit.edu;bcgsc.ca	37	chr12	125448959	125448959	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	cctgtagcagtggccgggctCcgtccgtcctgctctgcccg	13	17	1	0	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	DHX37-227	NM_032656	exon15	c.G2026T	p.E676X	CGGGCTCCGTCCG	.	70	6	93	0	.	1	1	0	0	0	A	125448959	C	A	125448959	4	1	9	1	0	0	0	0	0	1	0	0	4521	864	30	3	1499	3	DHX37	12	125448959	Nonsense_Mutation	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	1049872	125448959	8402936	454	1993										
TMEM132D	121256	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	129559056	129559056	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	gggaggtccacctgggctggGaagctggtgaggtcgctggg	21	8	0	1	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	TMEM132D-106	NM_133448	exon9	c.C2664A	p.F888L	GGCTGGGAAGCTG	.	66	26	78	1	.	0	0	0	0	0	T	129559056	G	T	129559056	3	4	9	1	0	0	0	0	1	0	0	0	16084	1165	41	3	639	3	TMEM132D	12	129559056	Missense_Mutation	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	4110097	129559056	4292839	455	1994										
PARP4	143	hgsc.bcm.edu;broad.mit.edu	37	chr13	25016806	25016806	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	agtttaataatcagagatttCaaggtttgttttttcatcta	6	4	4	1	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	PARP4-94	NM_006437	exon29	c.G3465T	p.L1155F	AGATTTCAAGGTT	.	105	6	116	0	.	15	15	0	0	0	A	25016806	C	A	25016806	3	1	9	1	0	0	0	0	1	0	0	0	11492	825	29	3	1733	3	PARP4	13	25016806	Missense_Mutation	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10		25016806	90153072	456	1995										
ATP8A2	51761	broad.mit.edu	37	chr13	26411330	26411330	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	gctttgccgcccttcactctGggaatctttgagaggtcttg	11	11	4	1	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	ATP8A2-138	NM_016529	exon29	c.G2784T	p.L928L	CACTCTGGGAATC	.	79	19	87	2	.	1	0	1	0	0	T	26411330	G	T	26411330	2	4	9	1	0	0	0	0	0	0	0	1	1194	1335	47	3		3	ATP8A2	13	26411330	Silent	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	1394524	26411330	88758548	457	1996										
B3GALTL	145173	bcgsc.ca	37	chr13	31843387	31843387	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	aagagtgaatccttgaaatcCgactttacaatagatttaaa	6	6	0	4	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	B3GALTL-92	NM_194318	exon8	c.C633A	p.S211S	GAAATCCGACTTT	.	33	32	42	2	.	1	1	0	0	0	A	31843387	C	A	31843387	2	1	9	1	0	0	0	0	0	0	0	1	1253	639	23	2		2	B3GALTL	13	31843387	Silent	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	5432057	31843387	83326491	458	1997										
PDS5B	23047	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr13	33316808	33316808	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	atcaggaacttctaccttaaGattgctaacaacaatattgc	5	9	2	1	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	PDS5B-94	NM_015032	exon23	c.G2555T	p.R852I	CCTTAAGATTGCT	.	73	32	104	0	.	3	2	1	0	0	T	33316808	G	T	33316808	3	4	9	1	0	0	0	0	1	0	0	0	11721	942	33	3	2641	3	PDS5B	13	33316808	Missense_Mutation	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	1473421	33316808	81853070	459	1998										
ENOX1	55068	ucsc.edu	37	chr13	43986176	43986176	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	gtgtctatcgctatactcccCaaaccatcggctgctgtggg	10	13	1	0	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	ENOX1-92	NM_017993	exon5	c.G84T	p.L28F	ACTCCCCAAACCA	.	88	9	115	2	.	0	0	0	0	0	A	43986176	C	A	43986176	3	1	9	1	0	0	0	0	1	0	0	0	5139	593	21	3	1899	3	ENOX1	13	43986176	Missense_Mutation	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	10669368	43986176	71183702	460	1999										
UTP14C	9724	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr13	52604696	52604696	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	tagaggagctggaagatgaaGaggagagagaccaaaggcag	17	4	0	6	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	UTP14C-138	NM_021645	exon2	c.G1756T	p.E586X	GATGAAGAGGAGA	.	224	88	244	3	.	4	3	1	0	0	T	52604696	G	T	52604696	4	4	9	1	0	0	0	0	0	1	0	0	17134	943	33	3	1758	3	UTP14C	13	52604696	Nonsense_Mutation	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	8618520	52604696	62565182	461	2000										
THSD1	55901	bcgsc.ca	37	chr13	52951587	52951587	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	gctaagtgtacttgtggtttCatcctcttcatttgacccaa	7	10	3	1	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	THSD1-94	NM_018676	exon5	c.G2518T	p.E840X	TGGTTTCATCCTC	.	317	32	406	4	.	4	4	0	0	0	A	52951587	C	A	52951587	4	1	9	1	0	0	0	0	0	1	0	0	15914	835	29	3	44	3	THSD1	13	52951587	Nonsense_Mutation	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	346891	52951587	62218291	462	2001										
PCDH9	5101	ucsc.edu;bcgsc.ca	37	chr13	67800034	67800034	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	accttgcttgctcctctgagCtgctttgaaccttgatgcat	8	12	1	3	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	PCDH9-96	NM_203487	exon2	c.G2539T	p.A847S	TCTGAGCTGCTTT	.	138	28	178	3	.	0	0	0	0	0	A	67800034	C	A	67800034	3	1	9	1	0	0	0	0	1	0	0	0	11547	797	28	3	1190	3	PCDH9	13	67800034	Missense_Mutation	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	14848447	67800034	47369844	463	2002										
GPR183	1880	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr13	99947317	99947317	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	ccaaaatacaatccatttcaCtttccatttgaagacttgga	4	10	1	2	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	GPR183-522	NM_004951	exon2	c.G1083C	p.K361N	ATTTCACTTTCCA	.	102	35	140	1	.	5	5	0	0	0	G	99947317	C	G	99947317	3	3	9	1	0	0	0	0	1	0	0	0	6698	564	20	3	6	3	GPR183	13	99947317	Missense_Mutation	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	32147283	99947317	15222561	464	2003										
ING1	3621	hgsc.bcm.edu	37	chr13	111368316	111368316	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	gacagtttcaggccgcatctCtgctgacccgagggtggggc	15	12	2	1	rs9555726	byfrequency	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	ING1-515	NM_005537	exon1	c.C526T	p.L176L	GCATCTCTGCTGA	.	10	10	0	0	C|0.372;T|0.628	0	0	0	0	0	T	111368316	C	T	111368316	2	4	9	1	0	0	0	0	0	0	0	1	7756	912	32	3		3	ING1	13	111368316	Silent	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	11420999	111368316	3801562	465	2004										
CUL4A	8451	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr13	113909353	113909353	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	gtcccaaaggaaaggaagtgGaagatggagacaagttcatt	13	5	1	2	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	CUL4A-651	NM_001008895	exon18	c.G1945T	p.E649X	GAAGTGGAAGATG	.	270	94	230	0	.	14	13	1	0	0	T	113909353	G	T	113909353	4	4	9	1	0	0	0	0	0	1	0	0	4063	1175	41	3	2015	3	CUL4A	13	113909353	Nonsense_Mutation	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	2541037	113909353	1260525	466	2005										
OR4K15	81127	broad.mit.edu	37	chr14	20443680	20443680	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	aattggaaaatcaaacccatGctcacttcattaactgatct	4	10	4	1	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	OR4K15-69	NM_001005486	exon1	c.G3T	p.M1I	ACCCATGCTCACT	.	76	19	57	2	.	0	0	0	0	0	T	20443680	G	T	20443680	3	4	9	1	0	0	0	0	1	0	0	0	11099	1319	46	3	5	3	OR4K15	14	20443680	Missense_Mutation	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10		20443680	86905860	467	2006										
CDH24	64403	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	23521682	23521682	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	gtgggccctggagtcctcacCgagctctgtagccagcacag	13	14	2	0	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	CDH24-90	NM_022478	exon8	c.G1363T	p.G455C	CCTCACCGAGCTC	.	120	12	62	0	.	3	0	3	0	0	A	23521682	C	A	23521682	3	1	9	1	0	0	0	0	1	0	0	0	3115	666	23	2	1120	2	CDH24	14	23521682	Missense_Mutation	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	3078002	23521682	83827858	468	2007										
TGM1	7051	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	24731331	24731331	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	cgggagccaggtcttcgagtGccagagctggaccctcgacc	14	14	1	1	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	TGM1-91	NM_000359	exon2	c.C228A	p.G76G	TCGAGTGCCAGAG	.	153	42	120	1	.	0	0	0	0	0	T	24731331	G	T	24731331	2	4	9	1	0	0	0	0	0	0	0	1	15866	1306	46	3		3	TGM1	14	24731331	Silent	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	1209649	24731331	82618209	469	2008										
KHNYN	23351	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr14	24901482	24901482	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	gtcacagggcagctcagtccCgaggagcctccctcctccag	11	17	2	0	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	KHNYN-93	NM_015299	exon3	c.C1015A	p.R339R	CAGTCCCGAGGAG	.	162	11	131	0	.	15	15	0	0	0	A	24901482	C	A	24901482	2	1	9	1	0	0	0	0	0	0	0	1	8171	644	23	2		2	KHNYN	14	24901482	Silent	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	170151	24901482	82448058	470	2009										
AKAP6	9472	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr14	33291762	33291762	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	ggtgatttatttggattgggCatctttaaaaatggcagtga	12	3	1	2	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	AKAP6-733	NM_004274	exon13	c.C4743A	p.G1581G	ATTGGGCATCTTT	.	103	28	99	0	.	0	0	0	0	0	A	33291762	C	A	33291762	2	1	9	1	0	0	0	0	0	0	0	1	455	697	25	3		3	AKAP6	14	33291762	Silent	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	8390280	33291762	74057778	471	2010										
RALGAPA1	253959	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr14	36191028	36191028	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	tagaaaatgacttgtcaactGaaactttctgaaattcatgt	6	6	3	4	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	RALGAPA1-138	NM_194301	exon16	c.C2132A	p.S711X	TCAACTGAAACTT	.	94	18	65	0	.	1	1	0	0	0	T	36191028	G	T	36191028	4	4	9	1	0	0	0	0	0	1	0	0	13048	1294	45	3	4231	3	RALGAPA1	14	36191028	Nonsense_Mutation	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	2899266	36191028	71158512	472	2011										
SOS2	6655	bcgsc.ca	37	chr14	50616832	50616832	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	tggtttgctgatatgccattCaattggtggaggtggacttt	13	5	1	1	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	SOS2-849	NM_006939	exon14	c.G2278T	p.E760X	GCCATTCAATTGG	.	223	57	176	4	.	12	12	0	0	0	A	50616832	C	A	50616832	4	1	9	1	0	0	0	0	0	1	0	0	14972	835	29	3	1760	3	SOS2	14	50616832	Nonsense_Mutation	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	14425804	50616832	56732708	473	2012										
NID2	22795	broad.mit.edu	37	chr14	52508850	52508850	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	gctgaagccgttctcagagcCaggtttttctaaagcaaaga	10	9	2	3	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	NID2-158	NM_007361	exon7	c.G1798T	p.G600C	CAGAGCCAGGTTT	.	74	14	45	1	.	4	4	0	0	0	A	52508850	C	A	52508850	3	1	9	1	0	0	0	0	1	0	0	0	10444	594	21	3	2393	3	NID2	14	52508850	Missense_Mutation	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	1892018	52508850	54840690	474	2013										
ERO1L	30001	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr14	53110333	53110333	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	ctgaagttttctaattctttCacacttgtagaaattctgta	5	7	4	2	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	ERO1L-90	NM_014584	exon16	c.G1362T	p.V454V	TTCTTTCACACTT	.	43	10	48	0	.	77	66	11	0	0	A	53110333	C	A	53110333	2	1	9	1	0	0	0	0	0	0	0	1	5252	813	29	3		3	ERO1L	14	53110333	Silent	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	601483	53110333	54239207	475	2014										
FERMT2	10979	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	53386013	53386013	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	tctaaggtccaatgtgtcttCagaagccaagttctcttctt	7	10	5	1	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	FERMT2-68	NM_001135000	exon3	c.G219T	p.L73L	TGTCTTCAGAAGC	.	158	54	138	1	.	0	0	0	0	0	A	53386013	C	A	53386013	2	1	9	1	0	0	0	0	0	0	0	1	5837	813	29	3		3	FERMT2	14	53386013	Silent	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	275680	53386013	53963527	476	2015										
PELI2	57161	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr14	56755230	56755230	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	gcagccagaacacggacgaaGcccagatcacacagagcacc	10	15	1	3	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	PELI2-91	NM_021255	exon4	c.G385T	p.A129S	GACGAAGCCCAGA	.	175	29	160	0	.	0	0	0	0	0	T	56755230	G	T	56755230	3	4	9	1	0	0	0	0	1	0	0	0	11751	971	34	3	399	3	PELI2	14	56755230	Missense_Mutation	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	3369217	56755230	50594310	477	2016										
RTN1	6252	ucsc.edu;bcgsc.ca	37	chr14	60212795	60212795	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	aaagtccaagtctttatcttCcagctcggggtgatgttgtt	10	8	2	1	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	RTN1-516	NM_021136	exon2	c.G646T	p.E216X	TATCTTCCAGCTC	.	155	59	129	3	.	0	0	0	0	0	A	60212795	C	A	60212795	4	1	9	1	0	0	0	0	0	1	0	0	13760	864	30	3	1781	3	RTN1	14	60212795	Nonsense_Mutation	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	3457565	60212795	47136745	478	2017										
SYNE2	23224	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr14	64580141	64580141	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	gcccagggtggagaaaactaGgccggagcccacagaagtcc	14	12	0	2	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	SYNE2-164	NM_182914	exon66	c.G12692T	p.R4231M	AAACTAGGCCGGA	.	83	24	66	0	.	1	1	0	0	0	T	64580141	G	T	64580141	3	4	9	1	0	0	0	0	1	0	0	0	15483	1000	35	3	12950	3	SYNE2	14	64580141	Missense_Mutation	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	4367346	64580141	42769399	479	2018										
DLST	1743	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	75359678	75359678	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	ctcgccctcacagcctccttCtggcaaacctggtaggcttc	8	17	2	0	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	DLST-227	NM_001933	exon8	c.C584A	p.S195Y	CTCCTTCTGGCAA	.	103	15	103	0	.	0	0	0	0	0	A	75359678	C	A	75359678	3	1	9	1	0	0	0	0	1	0	0	0	4580	913	32	3	614	3	DLST	14	75359678	Missense_Mutation	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	10779537	75359678	31989862	480	2019										
BEGAIN	57596	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr14	101011394	101011394	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	ctctgcagtgccatgtagttGctctgaatcctggtgcagga	12	10	2	1	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	BEGAIN-68	NM_020836	exon4	c.C186A	p.S62R	GTAGTTGCTCTGA	.	72	7	50	0	.	0	0	0	0	0	T	101011394	G	T	101011394	3	4	9	1	0	0	0	0	1	0	0	0	1398	1310	46	3	1611	3	BEGAIN	14	101011394	Missense_Mutation	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	25651716	101011394	6338146	481	2020										
HSP90AA1	3320	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	102551693	102551693	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	tcttcacaatctcctttattCttcgttcctccaagtactca	2	14	5	0	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	HSP90AA1-949	NM_001017963	exon5	c.G971T	p.R324I	TTTATTCTTCGTT	.	192	58	154	1	.	194	137	57	0	0	A	102551693	C	A	102551693	3	1	9	1	0	0	0	0	1	0	0	0	7422	913	32	3	1625	3	HSP90AA1	14	102551693	Missense_Mutation	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	1540299	102551693	4797847	482	2021										
SIVA1	10572	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr14	105222044	105222044	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	atgaaggctgtgccgtcgttCacctgccagagtccccaaag	11	13	1	2	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	SIVA1-514	NM_006427	exon2	c.C196A	p.H66N	GTCGTTCACCTGC	.	117	33	95	0	.	185	127	58	0	0	A	105222044	C	A	105222044	3	1	9	1	0	0	0	0	1	0	0	0	14380	826	29	3	202	3	SIVA1	14	105222044	Missense_Mutation	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	2670351	105222044	2127496	483	2022										
BRF1	2972	broad.mit.edu;ucsc.edu	37	chr14	105688210	105688210	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	cagctcctcgtcctctgtgtCctcctcgccacacaagctgg	8	18	1	0	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	BRF1-155	NM_001519	exon11	c.G1090T	p.D364Y	CTGTGTCCTCCTC	.	83	4	77	0	.	17	14	3	0	0	A	105688210	C	A	105688210	3	1	9	1	0	0	0	0	1	0	0	0	1513	855	30	3	975	3	BRF1	14	105688210	Missense_Mutation	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	466166	105688210	1661330	484	2023										
HERC2	8924	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	28441707	28441707	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	aatgatatcttttccattggCactgaaagctaggacagaac	8	8	1	3	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	HERC2-234	NM_004667	exon51	c.G8020T	p.A2674S	CATTGGCACTGAA	.	394	94	285	1	.	0	0	0	0	0	A	28441707	C	A	28441707	3	1	9	1	0	0	0	0	1	0	0	0	7079	710	25	3	6656	3	HERC2	15	28441707	Missense_Mutation	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10		28441707	74089685	485	2024										
TJP1	7082	broad.mit.edu;ucsc.edu	37	chr15	30018654	30018654	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	tttcagcgcaccataccaacCatcattcattgaatttaagt	4	11	3	1	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	TJP1-95	NM_175610	exon18	c.G2341T	p.G781C	ACCAACCATCATT	.	108	15	81	1	.	1	0	1	0	0	A	30018654	C	A	30018654	3	1	9	1	0	0	0	0	1	0	0	0	15966	594	21	3	2949	3	TJP1	15	30018654	Missense_Mutation	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	1576947	30018654	72512738	486	2025										
TRPM1	4308	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr15	31342674	31342674	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	cacttcctctttcactttccCtttcttcttgcctttccctt	1	17	4	0	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	TRPM1-94	NM_001252020	exon11	c.G1426T	p.G476W	CTTTCCCTTTCTT	.	151	31	126	0	.	0	0	0	0	0	A	31342674	C	A	31342674	3	1	9	1	0	0	0	0	1	0	0	0	16623	681	24	3	3570	3	TRPM1	15	31342674	Missense_Mutation	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	1324020	31342674	71188718	487	2026										
FAM98B	283742	broad.mit.edu;bcgsc.ca	37	chr15	38762452	38762452	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	tttaagtacagaacttcaagCttcacagatattacagaaca	5	8	2	3	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	FAM98B-515	NM_001042429	exon4	c.C377A	p.A126D	TTCAAGCTTCACA	.	151	6	105	0	.	11	10	1	0	0	A	38762452	C	A	38762452	3	1	9	1	0	0	0	0	1	0	0	0	5676	797	28	3	391	3	FAM98B	15	38762452	Missense_Mutation	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	7419778	38762452	63768940	488	2027										
RASGRP1	10125	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr15	38808534	38808534	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	tcctttgagtaagtttcctgGaccagtcacgggcattgctt	10	10	1	1	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	RASGRP1-697	NM_001128602	exon6	c.C539A	p.S180Y	TTCCTGGACCAGT	.	150	23	84	0	.	0	0	0	0	0	T	38808534	G	T	38808534	3	4	9	1	0	0	0	0	1	0	0	0	13109	1174	41	3	1902	3	RASGRP1	15	38808534	Missense_Mutation	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	46082	38808534	63722858	489	2028										
TYRO3	7301	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr15	41861213	41861213	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	ctggtggtctcttctcatgaCcgtgcaggtgaggcttgtag	14	9	2	2	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	TYRO3-1388	NM_006293	exon9	c.C1245A	p.D415E	TCATGACCGTGCA	.	112	10	60	0	.	0	0	0	0	0	A	41861213	C	A	41861213	3	1	9	1	0	0	0	0	1	0	0	0	16852	506	18	3	1279	3	TYRO3	15	41861213	Missense_Mutation	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	3052679	41861213	60670179	490	2029										
UNC13C	440279	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr15	54825158	54825158	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	gtataaaacagatgagtttcGaactaaatcaaatgagagca	8	5	1	3	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	UNC13C-51	NM_001080534	exon24	c.G5590T	p.E1864X	AGTTTCGAACTAA	.	116	33	142	0	.	0	0	0	0	0	T	54825158	G	T	54825158	4	4	9	1	0	0	0	0	0	1	0	0	17024	1059	37	2	5684	2	UNC13C	15	54825158	Nonsense_Mutation	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	12963945	54825158	47706234	491	2030										
CGNL1	84952	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	57731629	57731629	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	tggaaaccgaaggtagtcagGaaagtacagtgatccgtgcg	14	7	1	1	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	CGNL1-100	NM_001252335	exon3	c.G1432T	p.E478X	AGTCAGGAAAGTA	.	171	24	137	1	.	0	0	0	0	0	T	57731629	G	T	57731629	4	4	9	1	0	0	0	0	0	1	0	0	3310	1175	41	3	1434	3	CGNL1	15	57731629	Nonsense_Mutation	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	2906471	57731629	44799763	492	2031										
VPS13C	54832	bcgsc.ca	37	chr15	62209759	62209759	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	ctgctcctatgaagttcttcCttccaggaaatataagtggt	8	9	1	1	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	VPS13C-92	NM_020821	exon60	c.G7836T	p.K2612N	TTCTTCCTTCCAG	.	184	15	163	2	.	3	2	1	0	0	A	62209759	C	A	62209759	3	1	9	1	0	0	0	0	1	0	0	0	17229	680	24	3	3557	3	VPS13C	15	62209759	Missense_Mutation	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	4478130	62209759	40321633	493	2032										
TLN2	83660	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr15	63017258	63017258	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	aatgaactgcaggatgccaaGatggcagccgtggagagcca	14	9	0	3	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	TLN2-573	NM_015059	exon24	c.G3210T	p.K1070N	TGCCAAGATGGCA	.	56	20	35	0	.	0	0	0	0	0	T	63017258	G	T	63017258	3	4	9	1	0	0	0	0	1	0	0	0	15985	933	33	3	3304	3	TLN2	15	63017258	Missense_Mutation	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	807499	63017258	39514134	494	2033										
CLPX	10845	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr15	65443246	65443246	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	cttcagaggattcttttgttGgagccctacaatgaaaagcc	9	9	2	2	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	CLPX-90	NM_006660	exon14	c.C1817A	p.P606Q	TTTGTTGGAGCCC	.	37	16	40	0	.	0	0	0	0	0	T	65443246	G	T	65443246	3	4	9	1	0	0	0	0	1	0	0	0	3562	1348	47	3	88	3	CLPX	15	65443246	Missense_Mutation	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	2425988	65443246	37088146	495	2034										
SNAPC5	10302	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	66787699	66787699	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	gttcaggtacagtgtgagaaGacagcatctcatcccctctt	9	11	3	2	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	SNAPC5-90	NM_006049	exon2	c.C149A	p.S50Y	TGAGAAGACAGCA	.	149	44	137	1	.	20	17	3	0	0	T	66787699	G	T	66787699	3	4	9	1	0	0	0	0	1	0	0	0	14873	942	33	3	155	3	SNAPC5	15	66787699	Missense_Mutation	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	1344453	66787699	35743693	496	2035										
CD276	80381	broad.mit.edu	37	chr15	73994904	73994904	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	tcgtgagcatccgggatttcGgcagcgctgccgtcagcctg	14	13	1	1	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	CD276-91	NM_025240	exon3	c.G388T	p.G130C	GATTTCGGCAGCG	.	149	17	70	2	.	112	107	5	0	0	T	73994904	G	T	73994904	3	4	9	1	0	0	0	0	1	0	0	0	2998	1116	39	2	394	2	CD276	15	73994904	Missense_Mutation	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	7207205	73994904	28536488	497	2036										
CSK	1445	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr15	75091628	75091628	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	cccagttggttccacggcaaGatcacacgggagcaggctga	13	12	1	2	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	CSK-510	NM_001127190	exon6	c.G258T	p.K86N	CGGCAAGATCACA	.	92	31	78	0	.	31	27	4	0	0	T	75091628	G	T	75091628	3	4	9	1	0	0	0	0	1	0	0	0	3949	933	33	3	272	3	CSK	15	75091628	Missense_Mutation	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	1096724	75091628	27439764	498	2037										
SNUPN	10073	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	75890858	75890858	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	ctcttcttgtgctccataatCtgctggagctggtgcccagc	10	13	3	0	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	SNUPN-91	NM_001042581	exon9	c.G924T	p.Q308H	CATAATCTGCTGG	.	98	9	109	1	.	43	33	10	0	0	A	75890858	C	A	75890858	3	1	9	1	0	0	0	0	1	0	0	0	14912	912	32	3	162	3	SNUPN	15	75890858	Missense_Mutation	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	799230	75890858	26640534	499	2038										
IREB2	3658	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr15	78732221	78732221	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	atctaaacttggcaccaagtAtggtaatgttgctttacatt	7	7	1	0	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	IREB2-90	NM_004136	exon2	c.A104G	p.Y35C	CCAAGTATGGTAA	.	52	4	52	0	.	0	0	0	0	0	G	78732221	A	G	78732221	3	3	9	1	0	0	0	0	1	0	0	0	7847	449	16	4	110	4	IREB2	15	78732221	Missense_Mutation	SNP	A	TCGA-OR-A5JA-01A-11D-A29I-10	2841363	78732221	23799171	500	2039										
MESDC1	59274	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr15	81295513	81295513	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	gcgtggtgtcggcctgcgtgCtcctgacccagtgcctcagg	15	14	1	1	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	MESDC1-90	NM_022566	exon1	c.C901A	p.L301I	TGCGTGCTCCTGA	.	72	25	27	0	.	28	15	13	0	0	A	81295513	C	A	81295513	3	1	9	1	0	0	0	0	1	0	0	0	9508	797	28	3	903	3	MESDC1	15	81295513	Missense_Mutation	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	2563292	81295513	21235879	501	2040										
AGBL1	123624	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr15	86806035	86806035	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	gacttggaaacagacgtgaaCaagctgagttccaaacctgg	11	9	0	3	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	.	NM_152336	exon9	c.C858A	p.N286K	CGTGAACAAGCTG	.	195	29	163	1	.	0	0	0	0	0	A	86806035	C	A	86806035	3	1	9	1	0	0	0	0	1	0	0	0	375	477	17	3	888	3	AGBL1	15	86806035	Missense_Mutation	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	5510522	86806035	15725357	502	2041										
KIF7	374654	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	90190829	90190829	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	gtgaagcgggcgccgcacctGcagtttgtactgctccatgg	14	12	0	1	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	KIF7-523	NM_198525	exon6	c.C1558A	p.Q520K	GCACCTGCAGTTT	.	60	27	67	1	.	0	0	0	0	0	T	90190829	G	T	90190829	3	4	9	1	0	0	0	0	1	0	0	0	8330	1328	46	3	2529	3	KIF7	15	90190829	Missense_Mutation	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	3384794	90190829	12340563	503	2042										
HAGHL	84264	hgsc.bcm.edu	37	chr16	778414	778414	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	gattgcccggacccacccgcCctgttctcgggtacccgcag	11	18	1	0	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	HAGHL-90	NM_032304	exon4	c.C387A	p.A129A	ACCCGCCCTGTTC	.	32	9	9	0	.	0	0	0	0	0	A	778414	C	A	778414	2	1	9	1	0	0	0	0	0	0	0	1	6967	610	22	3		3	HAGHL	16	778414	Silent	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10		778414	89576339	504	2043										
PTX4	390667	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	1537885	1537885	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	ctctcttccgccaggctccgGaaccggacgtcaacgttgta	10	15	2	0	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	PTX4-90	NM_001013658	exon2	c.C213A	p.F71L	GCTCCGGAACCGG	.	192	25	141	0	.	0	0	0	0	0	T	1537885	G	T	1537885	3	4	9	1	0	0	0	0	1	0	0	0	12858	1165	41	3	1215	3	PTX4	16	1537885	Missense_Mutation	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	759471	1537885	88816868	505	2044										
CREBBP	1387	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr16	3843582	3843582	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	atctgcagtggggcctgttgCaattgcttgtgtgggtacaa	14	7	1	0	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	CREBBP-1807	NM_001079846	exon4	c.G1021T	p.A341S	CTGTTGCAATTGC	.	116	34	130	1	.	3	2	1	0	0	A	3843582	C	A	3843582	3	1	9	1	0	0	0	0	1	0	0	0	3867	710	25	3	6419	3	CREBBP	16	3843582	Missense_Mutation	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	2305697	3843582	86511171	506	2045										
RSL1D1	26156	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr16	11940360	11940360	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	tgaatgccttttacctacctGcaagaaccacttttagaaat	5	10	0	3	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	RSL1D1-90	NM_015659	exon5	c.C633A	p.C211X	CTACCTGCAAGAA	.	113	27	65	0	.	0	0	0	0	0	T	11940360	G	T	11940360	4	4	9	1	0	0	0	0	0	1	0	0	13735	1311	46	3	859	3	RSL1D1	16	11940360	Nonsense_Mutation	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	8096778	11940360	78414393	507	2046										
PDXDC1	23042	ucsc.edu;bcgsc.ca;mdanderson.org	37	chr16	15102644	15102644	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	ttcttcctgcagctcggcttGcccttcccctgcttgtgccg	9	17	1	0	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	PDXDC1-91	NM_015027	exon7	c.G588T	p.L196F	CGGCTTGCCCTTC	.	254	33	255	3	.	0	0	0	0	0	T	15102644	G	T	15102644	3	4	9	1	0	0	0	0	1	0	0	0	11725	1310	46	3	614	3	PDXDC1	16	15102644	Missense_Mutation	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	3162284	15102644	75252109	508	2047										
ACSM3	6296	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr16	20787314	20787314	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	aaagaggagatcgggtaattCtgattctgcccagggtccca	12	9	2	3	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	ACSM3-91	NM_005622	exon3	c.C373A	p.L125M	GTAATTCTGATTC	.	134	12	100	0	.	125	121	4	0	0	A	20787314	C	A	20787314	3	1	9	1	0	0	0	0	1	0	0	0	185	912	32	3	379	3	ACSM3	16	20787314	Missense_Mutation	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	5684670	20787314	69567439	509	2048										
GGA2	23062	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr16	23491135	23491135	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	gatggcaccacagtccccatCtgcgcaggtccattgtccac	9	16	1	0	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	GGA2-91	NM_015044	exon11	c.G1080T	p.Q360H	CCCCATCTGCGCA	.	117	26	97	0	.	60	43	17	0	0	A	23491135	C	A	23491135	3	1	9	1	0	0	0	0	1	0	0	0	6373	912	32	3	789	3	GGA2	16	23491135	Missense_Mutation	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	2703821	23491135	66863618	510	2049										
IL21R	50615	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	27454345	27454345	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	gacagtataatatctcctggCgctcagattacgaagaccct	8	11	2	2	rs146177564	alternate_allele	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	IL21R-660	NM_181079	exon6	c.C481A	p.R161S	TCCTGGCGCTCAG	.	221	50	175	2	C|1.000;T|0.000	1	0	1	0	0	A	27454345	C	A	27454345	3	1	9	1	0	0	0	0	1	0	0	0	7692	768	27	2	429	2	IL21R	16	27454345	Missense_Mutation	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	3963210	27454345	62900408	511	2050										
KCTD13	253980	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	29918291	29918291	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	acggtgctctcggttctcttCatcctccccgcggccagccc	9	19	3	0	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	KCTD13-90	NM_178863	exon6	c.G892T	p.E298X	TCTCTTCATCCTC	.	147	21	110	0	.	51	45	6	0	0	A	29918291	C	A	29918291	4	1	9	1	0	0	0	0	0	1	0	0	8121	835	29	3	101	3	KCTD13	16	29918291	Nonsense_Mutation	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	2463946	29918291	60436462	512	2051										
GDPD3	79153	broad.mit.edu	37	chr16	30123477	30123477	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	gccttgcatttcttcatgacCgagctcttctccgaggccca	8	15	4	1	rs150465018	alternate_allele	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	GDPD3-90	NM_024307	exon6	c.G549T	p.S183S	CATGACCGAGCTC	.	123	20	88	2	C|1.000;T|0.000	1	1	0	0	0	A	30123477	C	A	30123477	2	1	9	1	0	0	0	0	0	0	0	1	6345	639	23	2		2	GDPD3	16	30123477	Silent	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	205186	30123477	60231276	513	2052										
CORO1A	11151	broad.mit.edu	37	chr16	30198031	30198031	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	tgccagtggctccgaggactGcacagtcatggtgagtggtg	16	9	1	1	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	CORO1A-226	NM_001193333	exon4	c.G311T	p.C104F	AGGACTGCACAGT	.	73	4	38	1	.	0	0	0	0	0	T	30198031	G	T	30198031	3	4	9	1	0	0	0	0	1	0	0	0	3759	1319	46	3	317	3	CORO1A	16	30198031	Missense_Mutation	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	74554	30198031	60156722	514	2053										
ZNF768	79724	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr16	30535865	30535865	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	cggcccgccgcgtgggtccgCtggtggcggatgaggtcgga	20	12	0	1	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	ZNF768-90	NM_024671	exon2	c.G1596T	p.Q532H	GGTCCGCTGGTGG	.	134	47	15	0	.	139	90	49	0	0	A	30535865	C	A	30535865	3	1	9	1	0	0	0	0	1	0	0	0	18178	796	28	3	30	3	ZNF768	16	30535865	Missense_Mutation	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	337834	30535865	59818888	515	2054										
BCKDK	10295	broad.mit.edu;bcgsc.ca	37	chr16	31121421	31121421	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	gagctatatatccgtgccttCcagaagctgacagacttccc	8	13	0	3	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	BCKDK-765	NM_005881	exon5	c.C399A	p.F133L	TGCCTTCCAGAAG	.	196	8	168	0	.	137	134	3	0	0	A	31121421	C	A	31121421	3	1	9	1	0	0	0	0	1	0	0	0	1362	854	30	3	413	3	BCKDK	16	31121421	Missense_Mutation	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	585556	31121421	59233332	516	2055										
ITGAM	3684	ucsc.edu;bcgsc.ca	37	chr16	31336693	31336693	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	tcaccttcttcttcccgcttGacctgtcctaccggaaggtg	8	15	3	1	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	ITGAM-226	NM_001145808	exon20	c.G2476T	p.D826Y	CCGCTTGACCTGT	.	190	85	162	2	.	3	1	2	0	0	T	31336693	G	T	31336693	3	4	9	1	0	0	0	0	1	0	0	0	7908	1290	45	3	2554	3	ITGAM	16	31336693	Missense_Mutation	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	215272	31336693	59018060	517	2056										
ZNF267	10308	hgsc.bcm.edu	37	chr16	31927495	31927495	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	agaatgtggcaaagccttcaActataggtcatacctcacta	7	10	3	1	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	ZNF267-138	NM_003414	exon4	c.A1925G	p.N642S	CCTTCAACTATAG	.	99	5	102	0	.	11	11	0	0	0	G	31927495	A	G	31927495	3	3	9	1	0	0	0	0	1	0	0	0	17843	43	2	4	1939	4	ZNF267	16	31927495	Missense_Mutation	SNP	A	TCGA-OR-A5JA-01A-11D-A29I-10	590802	31927495	58427258	518	2057										
IRX3	79191	hgsc.bcm.edu	37	chr16	54318528	54318528	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	ccagcagggagagcgggtgcAggcgggggccgggcggtggg	25	9	0	1	rs1450355		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	IRX3-90	NM_024336	exon2	c.T1265C	p.L422P	GGGTGCAGGCGGG	.	6	6	0	0	T|0.035;G|0.004	0	0	0	0	0	G	54318528	A	G	54318528	3	3	9	1	0	0	0	0	1	0	0	0	7866	188	7	4	252	4	IRX3	16	54318528	Missense_Mutation	SNP	A	TCGA-OR-A5JA-01A-11D-A29I-10	22391033	54318528	36036225	519	2058										
CCDC135	84229	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	57732903	57732903	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	tgcccggaccgcgtgcccctCttcctgcaccccctgaacga	9	20	1	1	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	CCDC135-90	NM_032269	exon3	c.C345A	p.L115L	GCCCCTCTTCCTG	.	125	12	115	1	.	0	0	0	0	0	A	57732903	C	A	57732903	2	1	9	1	0	0	0	0	0	0	0	1	2775	900	32	3		3	CCDC135	16	57732903	Silent	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	3414375	57732903	32621850	520	2059										
CNGB1	1258	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	57935280	57935280	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	ttgcacacatagtcgttgggCaggtagacaacagagcgaag	13	8	0	2	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	CNGB1-137	NM_001297	exon29	c.G2952T	p.L984L	GTTGGGCAGGTAG	.	143	16	88	0	.	0	0	0	0	0	A	57935280	C	A	57935280	2	1	9	1	0	0	0	0	0	0	0	1	3606	697	25	3		3	CNGB1	16	57935280	Silent	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	202377	57935280	32419473	521	2060										
LRRC29	26231	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	67241849	67241849	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	ggagctggctgcctgggcccAgcccttgtcactgagtcggc	15	14	1	1	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	LRRC29-226	NM_001004055	exon5	c.T430A	p.W144R	GGGCCCAGCCCTT	.	108	15	89	1	.	4	4	0	0	0	T	67241849	A	T	67241849	3	4	9	1	0	0	0	0	1	0	0	0	9010	188	7	5	249	5	LRRC29	16	67241849	Missense_Mutation	SNP	A	TCGA-OR-A5JA-01A-11D-A29I-10	9306569	67241849	23112904	522	2061										
KCTD19	146212	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	67333415	67333415	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	agcggtttcacggactccagGctggctgtgcgggccccctt	14	14	1	0	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	KCTD19-69	NM_001100915	exon6	c.C837A	p.S279R	CTCCAGGCTGGCT	.	86	9	57	1	.	0	0	0	0	0	T	67333415	G	T	67333415	3	4	9	1	0	0	0	0	1	0	0	0	8127	1194	42	3	1987	3	KCTD19	16	67333415	Missense_Mutation	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	91566	67333415	23021338	523	2062										
VAC14	55697	bcgsc.ca	37	chr16	70726795	70726795	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	agctggaaggcgctgctctgCggcaggagcatgagcaggcc	17	11	1	1	rs2278983	byfrequency	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	VAC14-227	NM_018052	exon18	c.G2115T	p.P705P	GCTCTGCGGCAGG	.	133	5	59	0	A|0.318;C|0.681;T|0.000	76	76	0	0	0	A	70726795	C	A	70726795	2	1	9	1	0	0	0	0	0	0	0	1	17149	755	27	2		2	VAC14	16	70726795	Silent	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	3393380	70726795	19627958	524	2063										
HYDIN	54768	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr16	71209570	71209570	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	ggcactccaggagccactttGtggccaatatctttggggct	12	11	1	0	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	HYDIN-92	NM_001198542	exon5	c.C537A	p.H179Q	CACTTTGTGGCCA	.	124	8	97	0	.	1	0	1	0	0	T	71209570	G	T	71209570	3	4	9	1	0	0	0	0	1	0	0	0	7488	1368	48	3	15246	3	HYDIN	16	71209570	Missense_Mutation	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	482775	71209570	19145183	525	2064										
RFWD3	55159	bcgsc.ca	37	chr16	74670456	74670456	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	gtaaattctgactttgatgtGacgtaagtttttgcaagtcc	9	6	1	3	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	RFWD3-522	NM_018124	exon8	c.C1214A	p.S405X	TGATGTGACGTAA	.	75	16	49	1	.	8	7	1	0	0	T	74670456	G	T	74670456	4	4	9	1	0	0	0	0	0	1	0	0	13296	1294	45	3	1134	3	RFWD3	16	74670456	Nonsense_Mutation	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	3460886	74670456	15684297	526	2065										
PKD1L2	114780	bcgsc.ca	37	chr16	81249935	81249935	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	ctcccgatgtggccgcaggtGtcaggggcagcggcggcctg	18	13	1	0	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	PKD1L2-92	NM_001076780	exon2	c.C378A	p.D126E	GCAGGTGTCAGGG	.	166	67	126	3	.	0	0	0	0	0	T	81249935	G	T	81249935	3	4	9	1	0	0	0	0	1	0	0	0	11994	1368	48	3	7238	3	PKD1L2	16	81249935	Missense_Mutation	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	6579479	81249935	9104818	527	2066										
FOXC2	2303	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr16	86601196	86601196	+	Silent	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	gcgctcatcaccatggccatCcagaacgcgcccgagaagaa	10	15	2	3	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	FOXC2-226	NM_005251	exon1	c.C255A	p.I85I	GGCCATCCAGAAC	.	415	124	312	1	.	1	1	0	0	0	A	86601196	C	A	86601196	2	1	9	1	0	0	0	0	0	0	0	1	6014	845	30	3		3	FOXC2	16	86601196	Silent	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	5351261	86601196	3753557	528	2067										
ZFPM1	161882	hgsc.bcm.edu	37	chr16	88599696	88599697	+	Frame_Shift_Del	DEL	GA	GA	-													0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	ccaacggagaggccagagcgGagcctctggcccagaatgga					rs67549438	alternate_allele	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	GA	GA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	ZFPM1-90	NM_153813	exon10	c.1330_1331del	p.444_444del	AGAGCGGAGCCTC	.	17	11	1	0	.	0	0	0	0	0	-	88599697	GA	-	88599696	7	5	9	1	0	1	0	1	0	0	0	0	17694	1175	41	0	1368	0	ZFPM1	16	88599696	Frame_Shift_Del	DEL	GA	TCGA-OR-A5JA-01A-11D-A29I-10	1998500	88599696	1755057	529	2068	18	4								
ZFPM1	161882	hgsc.bcm.edu	37	chr16	88599697	88599705	+	In_Frame_Del	DEL	AGCCTCTGG	AGCCTCTGG	-													0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	caacggagaggccagagcggAgcctctggcccagaatggag					novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	AGCCTCTGG	AGCCTCTGG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	ZFPM1-90	NM_153813	exon10	c.1331_1339del	p.444_447del	GAGCGGAGCCTCT	.	18	0	1	0	.	0	0	0	0	0	-	88599705	AGCCTCTGG	-	88599697	7	5	9	1	0	1	0	1	0	0	0	0	17694	304	11	0	1369	0	ZFPM1	16	88599697	In_Frame_Del	DEL	AGCCTCTGG	TCGA-OR-A5JA-01A-11D-A29I-10	1	88599697	1755056	530	2069	18	4								
ZFPM1	161882	hgsc.bcm.edu	37	chr16	88599701	88599701	+	Frame_Shift_Del	DEL	T	T	-													0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	ggagaggccagagcggagccTctggcccagaatggaggcag					novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	ZFPM1-90	NM_153813	exon10	c.1335delT	p.P445fs	GGAGCCTCTGGCC	.	17	12	0	0	.	0	0	0	0	0	-	88599701	T	-	88599701	7	5	9	1	0	1	0	1	0	0	0	0	17694	1538	54	0	1373	0	ZFPM1	16	88599701	Frame_Shift_Del	DEL	T	TCGA-OR-A5JA-01A-11D-A29I-10	4	88599701	1755052	531	2070	18	4								
ZFPM1	161882	hgsc.bcm.edu	37	chr16	88599703	88599705	+	In_Frame_Del	DEL	TGG	TGG	-													0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	agaggccagagcggagcctcTggcccagaatggaggcagca					novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	TGG	TGG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	ZFPM1-90	NM_153813	exon10	c.1337_1339del	p.446_447del	AGCCTCTGGCCCA	.	15	12	1	0	.	0	0	0	0	0	-	88599705	TGG	-	88599703	7	5	9	1	0	1	0	1	0	0	0	0	17694	1580	55	0	1375	0	ZFPM1	16	88599703	In_Frame_Del	DEL	TGG	TCGA-OR-A5JA-01A-11D-A29I-10	2	88599703	1755050	532	2071	18	4								
GLTPD2	388323	hgsc.bcm.edu	37	chr17	4693342	4693342	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	ggcgcgctgggaggcccggaCgcgggcgtgcagtgcagcga	21	12	0	0	rs35910358		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	GLTPD2-68	NM_001014985	exon4	c.C627A	p.D209E	CCCGGACGCGGGC	.	8	8	0	0	C|0.015;A|0.985	0	0	0	0	0	A	4693342	C	A	4693342	3	1	9	1	0	0	0	0	1	0	0	0	6493	535	19	2	641	2	GLTPD2	17	4693342	Missense_Mutation	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10		4693342	76501868	533	2072										
TP53	7157	hgsc.bcm.edu	37	chr17	7579521	7579521	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	ttcatctggacctgggtcttCagtgaaccattgttcaatat	8	9	5	1	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	TP53-70225	NM_000546	exon4	c.G166T	p.E56X	GGTCTTCAGTGAA	.	23	9	34	1	.	10	10	0	0	0	A	7579521	C	A	7579521	4	1	9	1	0	0	0	0	0	1	0	0	16419	835	29	3	1136	3	TP53	17	7579521	Nonsense_Mutation	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	2886179	7579521	73615689	534	2073										
TP53	7157	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr17	7579722	7579722	+	Splice_Site	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	gaacgttgttttcaggaagtCtgaaagacaagagcagaaag	12	5	2	4	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	TP53-70225	NM_000546	exon4	c.75-1G>T	.	GGAAGTCTGAAAG	.	57	21	42	0	.	4	0	4	0	0	A	7579722	C	A	7579722	5	1	9	1	0	0	0	0	0	0	1	0	16419	927	32	3	1232	3	TP53	17	7579722	Splice_Site	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	201	7579722	73615488	535	2074										
MAP2K3	5606	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr17	21215491	21215491	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	gcggttcccttacgagtcctGggggaccccgttccagcagc	13	15	0	0	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	MAP2K3-790	NM_145109	exon10	c.G812T	p.W271L	AGTCCTGGGGGAC	.	81	8	102	0	.	50	48	2	0	0	T	21215491	G	T	21215491	3	4	9	1	0	0	0	0	1	0	0	0	9266	1357	47	3	850	3	MAP2K3	17	21215491	Missense_Mutation	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	13635769	21215491	59979719	536	2075										
SARM1	23098	hgsc.bcm.edu	37	chr17	26699121	26699121	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	cgccatgtcgggcccacggcGgggcgccgagcggctggcgg	20	15	0	0	rs7212814		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	.	NM_015077	exon1	c.G68C	p.R23P	CACGGCGGGGCGC	.	7	7	0	0	G|0.001;C|0.999	2	0	2	0	0	C	26699121	G	C	26699121	3	2	9	1	0	0	0	0	1	0	0	0	13877	1116	39	2	70	2	SARM1	17	26699121	Missense_Mutation	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	5483630	26699121	54496089	537	2076										
BLMH	642	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	28601155	28601155	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	ataatttttatctttgtctcGatattcccaggtgaatgtct	6	7	3	1	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	BLMH-91	NM_000386	exon7	c.C706T	p.R236X	TGTCTCGATATTC	.	55	12	75	0	.	9	9	0	0	0	A	28601155	G	A	28601155	4	1	9	1	0	0	0	0	0	1	0	0	1447	1066	37	1	685	1	BLMH	17	28601155	Nonsense_Mutation	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	1902034	28601155	52594055	538	2077										
RAB11FIP4	84440	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	29848225	29848225	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	catgacgacctcagacctttCtacacactccaccacctcgc	4	19	2	2	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	RAB11FIP4-91	NM_032932	exon5	c.C605A	p.S202Y	ACCTTTCTACACA	.	112	12	141	0	.	1	1	0	0	0	A	29848225	C	A	29848225	3	1	9	1	0	0	0	0	1	0	0	0	12931	913	32	3	623	3	RAB11FIP4	17	29848225	Missense_Mutation	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	1247070	29848225	51346985	539	2078										
RAB11FIP4	84440	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	29848320	29848320	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	gtgcccccagcagcccttgcCccgatgatgagaccaggacc	11	17	0	2	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	RAB11FIP4-91	NM_032932	exon5	c.C700A	p.P234T	CCTTGCCCCGATG	.	177	79	205	0	.	1	0	1	0	0	A	29848320	C	A	29848320	3	1	9	1	0	0	0	0	1	0	0	0	12931	623	22	3	718	3	RAB11FIP4	17	29848320	Missense_Mutation	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	95	29848320	51346890	540	2079										
GAS2L2	246176	broad.mit.edu;ucsc.edu	37	chr17	34072812	34072812	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	gactctctggcctctgccatGacctggatgtccagctgctg	11	14	2	1	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	GAS2L2-227	NM_139285	exon6	c.C1704A	p.V568V	TGCCATGACCTGG	.	73	7	76	1	.	0	0	0	0	0	T	34072812	G	T	34072812	2	4	9	1	0	0	0	0	0	0	0	1	6267	1277	45	3		3	GAS2L2	17	34072812	Silent	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	4224492	34072812	47122398	541	2080										
ACACA	31	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	35468526	35468526	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	acgcatggttttcaccagatCctttctgcggaatttgattt	8	9	2	2	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	ACACA-154	NM_198834	exon52	c.G6505T	p.D2169Y	CCAGATCCTTTCT	.	65	8	92	0	.	15	15	0	0	0	A	35468526	C	A	35468526	3	1	9	1	0	0	0	0	1	0	0	0	106	855	30	3	666	3	ACACA	17	35468526	Missense_Mutation	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	1395714	35468526	45726684	542	2081										
KRT39	390792	bcgsc.ca	37	chr17	39116728	39116728	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	tgtagcgagcctctgtctccGttaggatgcactcttgggaa	12	10	3	0	rs17843021	byfrequency	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	.	NM_213656	exon6	c.C1022T	p.T341M	GTCTCCGTTAGGA	.	83	5	92	0	G|0.868;A|0.132	0	0	0	0	0	A	39116728	G	A	39116728	3	1	9	1	0	0	0	0	1	0	0	0	8497	1145	40	1	461	1	KRT39	17	39116728	Missense_Mutation	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	3648202	39116728	42078482	543	2082										
KRT40	125115	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	39140279	39140279	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	ctcattgctagtgaacacccCatcctcacaccaggcacagt	6	16	2	1	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	.	NM_182497	exon3	c.G247T	p.G83W	ACACCCCATCCTC	.	125	54	155	0	.	0	0	0	0	0	A	39140279	C	A	39140279	3	1	9	1	0	0	0	0	1	0	0	0	8499	594	21	3	1076	3	KRT40	17	39140279	Missense_Mutation	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	23551	39140279	42054931	544	2083										
KRTAP1-3	81850	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	39190809	39190809	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	ctggccatagccaatgccacCaccaatgccacagccagttc	7	17	0	0	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	.	NM_030966	exon1	c.G265T	p.G89C	TGCCACCACCAAT	.	91	27	121	1	.	0	0	0	0	0	A	39190809	C	A	39190809	3	1	9	1	0	0	0	0	1	0	0	0	8524	594	21	3	242	3	KRTAP1-3	17	39190809	Missense_Mutation	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	50530	39190809	42004401	545	2084										
KRTAP4-3	85290	bcgsc.ca	37	chr17	39324355	39324355	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	gcagcagctggggcggcagcAgctctcctggccgagacctt	15	14	1	1	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	KRTAP4-3-22	NM_033187	exon1	c.T70A	p.C24S	GGCAGCAGCTCTC	.	164	22	168	0	.	0	0	0	0	0	T	39324355	A	T	39324355	3	4	9	1	0	0	0	0	1	0	0	0	8574	188	7	5	521	5	KRTAP4-3	17	39324355	Missense_Mutation	SNP	A	TCGA-OR-A5JA-01A-11D-A29I-10	133546	39324355	41870855	546	2085										
KRT33B	3884	broad.mit.edu	37	chr17	39520197	39520197	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	tggtggtggcgcaggggttgGagggcagcctgggatgcaga	22	6	0	1	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	KRT33B-90	NM_002279	exon7	c.C1106A	p.S369Y	GGGTTGGAGGGCA	.	103	3	137	0	.	0	0	0	0	0	T	39520197	G	T	39520197	3	4	9	1	0	0	0	0	1	0	0	0	8491	1174	41	3	112	3	KRT33B	17	39520197	Missense_Mutation	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	195842	39520197	41675013	547	2086										
RND2	8153	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr17	41180515	41180515	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	gctcctcccggtcctctgagCgcagcgtcagggatgtcttc	12	15	3	1	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	RND2-227	NM_005440	exon5	c.C502A	p.R168S	TCTGAGCGCAGCG	.	107	9	152	0	.	5	5	0	0	0	A	41180515	C	A	41180515	3	1	9	1	0	0	0	0	1	0	0	0	13455	768	27	2	520	2	RND2	17	41180515	Missense_Mutation	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	1660318	41180515	40014695	548	2087										
FMNL1	752	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	43322367	43322367	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	tgttggagatgaagtcgactGatcgcaagcagacgctgctg	14	8	0	4	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	FMNL1-91	NM_005892	exon21	c.G2620T	p.D874Y	TCGACTGATCGCA	.	97	41	105	2	.	2	1	1	0	0	T	43322367	G	T	43322367	3	4	9	1	0	0	0	0	1	0	0	0	5970	1290	45	3	2702	3	FMNL1	17	43322367	Missense_Mutation	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	2141852	43322367	37872843	549	2088										
NPEPPS	9520	broad.mit.edu;bcgsc.ca	37	chr17	45668234	45668234	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	gcttgacgccttagataacaGccatcctattgaagtgagcc	9	11	0	4	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	NPEPPS-90	NM_006310	exon10	c.G1247T	p.S416I	ATAACAGCCATCC	.	217	17	287	0	.	45	39	6	0	0	T	45668234	G	T	45668234	3	4	9	1	0	0	0	0	1	0	0	0	10604	971	34	3	1285	3	NPEPPS	17	45668234	Missense_Mutation	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	2345867	45668234	35526976	550	2089										
SNF8	11267	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	47007866	47007866	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	ggcttctctggcctcctcagCtgtaatctcctgggagtaga	11	12	3	1	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	SNF8-90	NM_007241	exon8	c.G748T	p.A250S	CCTCAGCTGTAAT	.	20	6	21	0	.	42	38	4	0	0	A	47007866	C	A	47007866	3	1	9	1	0	0	0	0	1	0	0	0	14881	797	28	3	32	3	SNF8	17	47007866	Missense_Mutation	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	1339632	47007866	34187344	551	2090										
PRKAR1A	5573	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	66526420	66526420	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	catctttgctttctccaggtGaaattgcactactgatgaat	7	9	2	3	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	PRKAR1A-1141	NM_212472	exon11	c.G976T	p.E326X	CCAGGTGAAATTG	.	112	29	139	1	.	0	0	0	0	0	T	66526420	G	T	66526420	4	4	9	1	0	0	0	0	0	1	0	0	12535	1291	45	3	1014	3	PRKAR1A	17	66526420	Nonsense_Mutation	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	19518554	66526420	14668790	552	2091										
MAP2K6	5608	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	67515498	67515498	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	caggaacagaaacggctactGatggatttggatatttccat	10	7	0	2	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	MAP2K6-1404	NM_002758	exon5	c.G291T	p.L97L	GCTACTGATGGAT	.	189	89	252	3	.	0	0	0	0	0	T	67515498	G	T	67515498	2	4	9	1	0	0	0	0	0	0	0	1	9269	1277	45	3		3	MAP2K6	17	67515498	Silent	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	989078	67515498	13679712	553	2092										
KCNJ2	3759	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	68171641	68171641	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	cagatgtgtcacggatgaatGcccaattgctgttttcatgg	11	8	2	2	rs199473380		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	KCNJ2-90	NM_000891	exon2	c.G461T	p.C154F	ATGAATGCCCAAT	.	87	36	105	0	.	0	0	0	0	0	T	68171641	G	T	68171641	3	4	9	1	0	0	0	0	1	0	0	0	8072	1319	46	3	463	3	KCNJ2	17	68171641	Missense_Mutation	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	656143	68171641	13023569	554	2093										
SSTR2	6752	ucsc.edu;bcgsc.ca	37	chr17	71166384	71166384	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	tgctaacagctgtgccaaccCtatcctatatgccttcttgt	6	13	1	0	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	SSTR2-522	NM_001050	exon2	c.C926A	p.P309H	CCAACCCTATCCT	.	135	54	178	2	.	0	0	0	0	0	A	71166384	C	A	71166384	3	1	9	1	0	0	0	0	1	0	0	0	15235	681	24	3	928	3	SSTR2	17	71166384	Missense_Mutation	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	2994743	71166384	10028826	555	2094										
MRPS7	51081	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	73258729	73258729	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	agctcatcaaagctgctccaGcagggaaaacaagttctgtg	10	10	3	0	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	MRPS7-90	NM_015971	exon2	c.G235T	p.A79S	GCTCCAGCAGGGA	.	50	19	82	0	.	43	24	19	0	0	T	73258729	G	T	73258729	3	4	9	1	0	0	0	0	1	0	0	0	9876	971	34	3	241	3	MRPS7	17	73258729	Missense_Mutation	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	2092345	73258729	7936481	556	2095										
MRPL38	64978	broad.mit.edu;bcgsc.ca	37	chr17	73898152	73898152	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	cacattggcccgaagctcctGgatggcctgtttccgttcca	10	14	0	0	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	MRPL38-46	NM_032478	exon3	c.C331A	p.Q111K	GCTCCTGGATGGC	.	110	22	165	2	.	45	42	3	0	0	T	73898152	G	T	73898152	3	4	9	1	0	0	0	0	1	0	0	0	9829	1357	47	3	839	3	MRPL38	17	73898152	Missense_Mutation	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	639423	73898152	7297058	557	2096										
AFMID	125061	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	76202078	76202078	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	ttgaagagctccacgatgtgGaccactttgaaattgttgag	11	7	0	4	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	AFMID-136	NM_001145526	exon10	c.G847T	p.D283Y	GATGTGGACCACT	.	83	21	106	0	.	14	12	2	0	0	T	76202078	G	T	76202078	3	4	9	1	0	0	0	0	1	0	0	0	362	1174	41	3	885	3	AFMID	17	76202078	Missense_Mutation	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	2303926	76202078	4993132	558	2097										
TBC1D16	125058	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	77984098	77984098	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	cacgccctcggctgacagttCcaaagagccatcctcctccc	7	19	0	2	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	TBC1D16-90	NM_019020	exon3	c.G640T	p.E214X	ACAGTTCCAAAGA	.	152	75	174	0	.	1	0	1	0	0	A	77984098	C	A	77984098	4	1	9	1	0	0	0	0	0	1	0	0	15642	864	30	3	1703	3	TBC1D16	17	77984098	Nonsense_Mutation	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	1782020	77984098	3211112	559	2098										
FSCN2	25794	hgsc.bcm.edu	37	chr17	79504073	79504073	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	ctgctgcgggccgatgccgaCgccccggccgggaccgcgct	16	18	0	0	rs143561119	by1000genomes	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	.	NM_001077182	exon5	c.C1518T	p.D506D	TGCCGACGCCCCG	.	7	6	0	0	C|0.964;T|0.036	0	0	0	0	0	T	79504073	C	T	79504073	2	4	9	1	0	0	0	0	0	0	0	1	6087	535	19	1		1	FSCN2	17	79504073	Silent	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	1519975	79504073	1691137	560	2099										
TMEM200C	645369	hgsc.bcm.edu	37	chr18	5890571	5890571	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	ggcggccttggccagagggcTggagtccgggtccgcactcc	17	14	0	1	rs7506026		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	.	NM_001080209	exon1	c.A1492G	p.S498G	GAGGGCTGGAGTC	.	9	7	0	0	T|0.941;C|0.059	0	0	0	0	0	C	5890571	T	C	5890571	3	2	9	1	0	0	0	0	1	0	0	0	16162	1580	55	4	377	4	TMEM200C	18	5890571	Missense_Mutation	SNP	T	TCGA-OR-A5JA-01A-11D-A29I-10		5890571	72186677	561	2100										
TWSG1	57045	broad.mit.edu	37	chr18	9399488	9399488	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	tccagaatgtattgactatgGtagtaaaactgtcaaatgta	8	5	1	2	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	TWSG1-92	NM_020648	exon5	c.G635T	p.G212V	ACTATGGTAGTAA	.	62	4	92	0	.	5	5	0	0	0	T	9399488	G	T	9399488	3	4	9	1	0	0	0	0	1	0	0	0	16823	1261	44	3	649	3	TWSG1	18	9399488	Missense_Mutation	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	3508917	9399488	68677760	562	2101										
ANKRD30B	374860	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr18	14748544	14748544	+	Silent	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	ttcggggatctagggaagatCcatacagctgcctcccgggg	14	11	1	1	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	ANKRD30B-24	NM_001145029	exon1	c.C126A	p.I42I	GAAGATCCATACA	.	79	51	100	1	.	0	0	0	0	0	A	14748544	C	A	14748544	2	1	9	1	0	0	0	0	0	0	0	1	659	845	30	3		3	ANKRD30B	18	14748544	Silent	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	5349056	14748544	63328704	563	2102										
ROCK1	6093	broad.mit.edu	37	chr18	18586509	18586509	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	ctgtgtgactcttcctcaatCttacagctgtgtccgattct	7	12	4	1	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	ROCK1-1026	NM_005406	exon16	c.G1688T	p.R563I	CTCAATCTTACAG	.	60	9	61	2	.	6	3	3	0	0	A	18586509	C	A	18586509	3	1	9	1	0	0	0	0	1	0	0	0	13552	913	32	3	2448	3	ROCK1	18	18586509	Missense_Mutation	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	3837965	18586509	59490739	564	2103										
DSC3	1825	broad.mit.edu	37	chr18	28610987	28610987	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	acctctttctgtgtctgtttCcttttgtcagaaagccatat	6	10	4	1	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	DSC3-94	NM_024423	exon3	c.G306T	p.R102S	CTGTTTCCTTTTG	.	99	4	95	1	.	0	0	0	0	0	A	28610987	C	A	28610987	3	1	9	1	0	0	0	0	1	0	0	0	4778	854	30	3	2471	3	DSC3	18	28610987	Missense_Mutation	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	10024478	28610987	49466261	565	2104										
FHOD3	80206	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr18	34320707	34320707	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	tgaaatccccctgggcagtgCagagcagttcctcctcaccc	9	16	1	2	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	FHOD3-139	NM_025135	exon18	c.C3140A	p.A1047E	GCAGTGCAGAGCA	.	160	35	167	2	.	27	24	3	0	0	A	34320707	C	A	34320707	3	1	9	1	0	0	0	0	1	0	0	0	5902	710	25	3	3210	3	FHOD3	18	34320707	Missense_Mutation	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	5709720	34320707	43756541	566	2105										
SLC14A2	8170	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr18	43221304	43221304	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	actcacctgctggccctcatCtgtggtaggtgttcagaaaa	10	11	4	1	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	SLC14A2-93	NM_001242692	exon9	c.C1122A	p.I374I	CCTCATCTGTGGT	.	79	30	102	0	.	0	0	0	0	0	A	43221304	C	A	43221304	2	1	9	1	0	0	0	0	0	0	0	1	14432	903	32	3		3	SLC14A2	18	43221304	Silent	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	8900597	43221304	34855944	567	2106										
SKA1	220134	ucsc.edu	37	chr18	47908517	47908517	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	aggaactctgtgaatctcttGaagaagattacaaagacata	8	6	2	5	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	SKA1-90	NM_001039535	exon4	c.G232T	p.E78X	TCTCTTGAAGAAG	.	171	16	128	3	.	2	2	0	0	0	T	47908517	G	T	47908517	4	4	9	1	0	0	0	0	0	1	0	0	14387	1291	45	3	242	3	SKA1	18	47908517	Nonsense_Mutation	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	4687213	47908517	30168731	568	2107										
ALPK2	115701	broad.mit.edu	37	chr18	56171296	56171296	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	ccatccctgatggaatacttCacaaattctccaatcagctc	4	14	3	1	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	ALPK2-765	NM_052947	exon11	c.G6114T	p.V2038V	ATACTTCACAAAT	.	86	4	114	1	.	0	0	0	0	0	A	56171296	C	A	56171296	2	1	9	1	0	0	0	0	0	0	0	1	545	813	29	3		3	ALPK2	18	56171296	Silent	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	8262779	56171296	21905952	569	2108										
TNFRSF11A	8792	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr18	60036497	60036497	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	gcagatgtctgcacaggctgCcggaaccctcctggggagga	15	12	1	1	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	TNFRSF11A-659	NM_003839	exon9	c.C1347G	p.C449W	AGGCTGCCGGAAC	.	42	35	48	0	.	0	0	0	0	0	G	60036497	C	G	60036497	3	3	9	1	0	0	0	0	1	0	0	0	16321	747	26	3	1381	3	TNFRSF11A	18	60036497	Missense_Mutation	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	3865201	60036497	18040751	570	2109										
CCDC102B	79839	broad.mit.edu	37	chr18	66505987	66505987	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	ctaaaattaagtgaggagatGaagcccaatctagatggtgt	11	5	1	4	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	CCDC102B-93	NM_001093729	exon5	c.G651T	p.M217I	GGAGATGAAGCCC	.	101	15	81	3	.	0	0	0	0	0	T	66505987	G	T	66505987	3	4	9	1	0	0	0	0	1	0	0	0	2743	1290	45	3	657	3	CCDC102B	18	66505987	Missense_Mutation	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	6469490	66505987	11571261	571	2110										
NFATC1	4772	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr18	77246918	77246918	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	cgagagcctgaagagttggaCcagttgtacctggatgacgg	15	8	0	4	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	NFATC1-290	NM_172387	exon9	c.C2724A	p.D908E	GTTGGACCAGTTG	.	98	6	61	0	.	0	0	0	0	0	A	77246918	C	A	77246918	3	1	9	1	0	0	0	0	1	0	0	0	10390	506	18	3	2948	3	NFATC1	18	77246918	Missense_Mutation	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	10740931	77246918	830330	572	2111										
ABCA7	10347	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	1047284	1047284	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	cgcgccaacctggctgcggcCtgcggcggcctggcctactt	14	17	0	0	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	ABCA7-98	NM_019112	exon15	c.C1974A	p.A658A	TGCGGCCTGCGGC	.	60	9	34	0	.	1	1	0	0	0	A	1047284	C	A	1047284	2	1	9	1	0	0	0	0	0	0	0	1	37	668	24	3		3	ABCA7	19	1047284	Silent	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10		1047284	58081699	573	2112										
ADAT3	113179	hgsc.bcm.edu	37	chr19	1912817	1912817	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	ggccagggccgcggcacctaCgacttcagacccttccccgc	11	19	1	1	rs35870594	byfrequency	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	ADAT3-154	NM_138422	exon2	c.C771T	p.Y257Y	CACCTACGACTTC	.	5	4	0	0	C|0.899;T|0.101	2	1	1	0	0	T	1912817	C	T	1912817	2	4	9	1	0	0	0	0	0	0	0	1	286	547	19	1		1	ADAT3	19	1912817	Silent	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	865533	1912817	57216166	574	2113										
LMNB2	84823	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr19	2434856	2434856	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	gggcctccttcagctcctcgCgagccgcactggccgccttg	12	18	1	0	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	LMNB2-290	NM_032737	exon6	c.G911A	p.R304H	TCCTCGCGAGCCG	.	105	26	41	0	.	12	10	2	0	0	T	2434856	C	T	2434856	3	4	9	1	0	0	0	0	1	0	0	0	8874	768	27	1	979	1	LMNB2	19	2434856	Missense_Mutation	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	522039	2434856	56694127	575	2114										
PIP5K1C	23396	broad.mit.edu	37	chr19	3644184	3644184	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	ggccgagaaggcagcggtggGccccagcggtttcacagcta	16	12	1	1	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	PIP5K1C-267	NM_001195733	exon12	c.C1411A	p.P471T	CGGTGGGCCCCAG	.	129	6	33	1	.	13	12	1	0	0	T	3644184	G	T	3644184	3	4	9	1	0	0	0	0	1	0	0	0	11970	1203	42	3	623	3	PIP5K1C	19	3644184	Missense_Mutation	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	1209328	3644184	55484799	576	2115										
TICAM1	148022	bcgsc.ca	37	chr19	4817397	4817397	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	acagaaagttggagtggcgtCtggtctttgacagagcaggg	16	6	2	3	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	TICAM1-153	NM_182919	exon2	c.G993T	p.Q331H	TGGCGTCTGGTCT	.	96	42	62	2	.	2	2	0	0	0	A	4817397	C	A	4817397	3	1	9	1	0	0	0	0	1	0	0	0	15929	912	32	3	1149	3	TICAM1	19	4817397	Missense_Mutation	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	1173213	4817397	54311586	577	2116										
ARHGEF18	23370	broad.mit.edu	37	chr19	7516148	7516148	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	gagcgcatcatccagaacacGgaaggtaggccttctcccca	10	14	2	1	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	ARHGEF18-228	NM_001130955	exon6	c.G1287A	p.T429T	GAACACGGAAGGT	.	164	5	117	0	.	0	0	0	0	0	A	7516148	G	A	7516148	2	1	9	1	0	0	0	0	0	0	0	1	901	1103	39	1		1	ARHGEF18	19	7516148	Silent	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	2698751	7516148	51612835	578	2117										
STXBP2	6813	broad.mit.edu;bcgsc.ca	37	chr19	7708095	7708095	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	gatgattgtatgaagcacttCaagggctcggtggagaagct	14	6	1	3	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	STXBP2-91	NM_001272034	exon13	c.C1104T	p.F368F	GCACTTCAAGGGC	.	86	26	52	1	.	44	36	8	0	0	T	7708095	C	T	7708095	2	4	9	1	0	0	0	0	0	0	0	1	15390	825	29	3		3	STXBP2	19	7708095	Silent	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	191947	7708095	51420888	579	2118										
LRRC8E	80131	broad.mit.edu	37	chr19	7964190	7964190	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	tacatccgacagacggtgctGaaagtgtgtaagttcctggc	12	9	0	2	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	LRRC8E-92	NM_001268284	exon4	c.G783T	p.L261L	GGTGCTGAAAGTG	.	257	10	199	1	.	5	2	3	0	0	T	7964190	G	T	7964190	2	4	9	1	0	0	0	0	0	0	0	1	9052	1277	45	3		3	LRRC8E	19	7964190	Silent	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	256095	7964190	51164793	580	2119										
CDC37	11140	broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr19	10503780	10503780	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	acggtggggtccatcttgctGatggcgtcctgcagcatctg	14	11	2	1	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	CDC37-522	NM_007065	exon7	c.C963A	p.I321I	CTTGCTGATGGCG	.	70	18	56	1	.	375	297	78	0	0	T	10503780	G	T	10503780	2	4	9	1	0	0	0	0	0	0	0	1	3074	1280	45	3		3	CDC37	19	10503780	Silent	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	2539590	10503780	48625203	581	2120										
PDE4A	5141	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	10574513	10574513	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	gccgacctcagcaaccccacCaagccgctggagctgtaccg	10	18	1	0	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	PDE4A-523	NM_001111307	exon14	c.C1788A	p.T596T	CCCCACCAAGCCG	.	324	91	249	4	.	0	0	0	0	0	A	10574513	C	A	10574513	2	1	9	1	0	0	0	0	0	0	0	1	11668	581	21	3		3	PDE4A	19	10574513	Silent	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	70733	10574513	48554470	582	2121										
LPPR2	0	broad.mit.edu	37	chr19	11472132	11472132	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	ccttcccctgcaaggatgcgGccctctgcgcctacgcggtc	11	18	1	0	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	LPPR2-153	NM_022737	exon6	c.G631T	p.A211S	GATGCGGCCCTCT	.	118	7	15	0	.	17	15	2	0	0	T	11472132	G	T	11472132	3	4	9	1	0	0	0	0	1	0	0	0	8952	1203	42	3	645	3	LPPR2	19	11472132	Missense_Mutation	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	897619	11472132	47656851	583	2122										
CNN1	1264	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	11657510	11657510	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	attcatcaataagctgcagcCaggctccgtgaagaagatca	9	10	3	3	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	CNN1-90	NM_001299	exon3	c.C206A	p.P69Q	TGCAGCCAGGCTC	.	138	45	69	0	.	10	10	0	0	0	A	11657510	C	A	11657510	3	1	9	1	0	0	0	0	1	0	0	0	3615	594	21	3	216	3	CNN1	19	11657510	Missense_Mutation	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	185378	11657510	47471473	584	2123										
CACNA1A	773	hgsc.bcm.edu	37	chr19	13409696	13409696	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	ttgcctcgctcggcctcgccCtcccagaacccgggttgctc	10	19	0	1	rs16022	bycluster;byfrequency;by1000genomes	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	CACNA1A-67	NM_001127221	exon19	c.G2754C	p.E918D	CTCGCCCTCCCAG	.	13	5	0	0	C|0.363;G|0.637	0	0	0	0	0	G	13409696	C	G	13409696	3	3	9	1	0	0	0	0	1	0	0	0	2544	680	24	3	4987	3	CACNA1A	19	13409696	Missense_Mutation	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	1752186	13409696	45719287	585	2124										
ZNF333	84449	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	14815966	14815966	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	agctctccaggagccgccttGgtctctgggatgcacggtaa	13	12	2	0	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	ZNF333-92	NM_032433	exon6	c.G407T	p.W136L	CGCCTTGGTCTCT	.	94	28	53	2	.	2	1	1	0	0	T	14815966	G	T	14815966	3	4	9	1	0	0	0	0	1	0	0	0	17887	1357	47	3	425	3	ZNF333	19	14815966	Missense_Mutation	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	1406270	14815966	44313017	586	2125										
AKAP8	10270	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	15482785	15482785	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	ccttgaattcttcatctcctGagcggaagtcaccagctgcg	9	13	4	2	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	AKAP8-290	NM_005858	exon7	c.C1016A	p.S339X	TCTCCTGAGCGGA	.	149	18	110	1	.	13	12	1	0	0	T	15482785	G	T	15482785	4	4	9	1	0	0	0	0	0	1	0	0	457	1294	45	3	1094	3	AKAP8	19	15482785	Nonsense_Mutation	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	666819	15482785	43646198	587	2126										
AKAP8L	26993	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	15507978	15507978	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	caccctgcggttccggttgtGatccatggtcttcagatgct	11	12	2	2	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	AKAP8L-1	NM_014371	exon12	c.C1519A	p.H507N	GGTTGTGATCCAT	.	188	22	141	0	.	203	174	29	0	0	T	15507978	G	T	15507978	3	4	9	1	0	0	0	0	1	0	0	0	458	1290	45	3	433	3	AKAP8L	19	15507978	Missense_Mutation	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	25193	15507978	43621005	588	2127										
CYP4F12	66002	broad.mit.edu;ucsc.edu	37	chr19	15789193	15789193	+	Silent	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	ttatgccaccctgacaccatCcggtctatcaccaatgcctc	5	17	2	1	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	CYP4F12-95	NM_023944	exon3	c.C321A	p.I107I	CACCATCCGGTCT	.	188	19	126	2	.	0	0	0	0	0	A	15789193	C	A	15789193	2	1	9	1	0	0	0	0	0	0	0	1	4193	845	30	3		3	CYP4F12	19	15789193	Silent	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	281215	15789193	43339790	589	2128										
CYP4F2	8529	ucsc.edu;bcgsc.ca	37	chr19	16000335	16000335	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	gggagagtgcggcgccgctcCtggatgacggcatctgtgaa	17	10	1	3	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	CYP4F2-92	NM_001082	exon7	c.G816T	p.Q272H	CCGCTCCTGGATG	.	398	110	298	3	.	0	0	0	0	0	A	16000335	C	A	16000335	3	1	9	1	0	0	0	0	1	0	0	0	4194	680	24	3	774	3	CYP4F2	19	16000335	Missense_Mutation	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	211142	16000335	43128648	590	2129										
ANKLE1	126549	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	17394631	17394631	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	cagggaacctgtcggcccttGccggcacctgccagtctcca	11	17	1	0	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	.	NM_152363	exon5	c.G1058T	p.C353F	GCCCTTGCCGGCA	.	86	10	81	0	.	0	0	0	0	0	T	17394631	G	T	17394631	3	4	9	1	0	0	0	0	1	0	0	0	632	1319	46	3	1076	3	ANKLE1	19	17394631	Missense_Mutation	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	1394296	17394631	41734352	591	2130										
SLC27A1	376497	ucsc.edu;bcgsc.ca	37	chr19	17599870	17599870	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	atgggctgacagtcgtcctcCgcaagaaattctcggccagc	11	13	1	2	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	SLC27A1-226	NM_198580	exon6	c.C940T	p.R314C	GTCCTCCGCAAGA	.	332	151	212	10	.	7	2	5	0	0	T	17599870	C	T	17599870	3	4	9	1	0	0	0	0	1	0	0	0	14560	652	23	1	962	1	SLC27A1	19	17599870	Missense_Mutation	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	205239	17599870	41529113	592	2131										
FAM129C	199786	broad.mit.edu	37	chr19	17648324	17648324	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	catgcctggaggctggccctGcagggtggcatccggcttca	15	13	1	0	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	FAM129C-90	NM_001098524	exon6	c.G660T	p.L220L	GGCCCTGCAGGGT	.	37	4	20	0	.	0	0	0	0	0	T	17648324	G	T	17648324	2	4	9	1	0	0	0	0	0	0	0	1	5454	1306	46	3		3	FAM129C	19	17648324	Silent	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	48454	17648324	41480659	593	2132										
MAST3	23031	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	18241370	18241370	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	atcaagaagatcaacaaacaGaacttgatcctgcgtaacca	6	10	2	4	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	MAST3-502	NM_015016	exon13	c.G1203T	p.Q401H	CAAACAGAACTTG	.	232	25	196	1	.	2	2	0	0	0	T	18241370	G	T	18241370	3	4	9	1	0	0	0	0	1	0	0	0	9354	933	33	3	1253	3	MAST3	19	18241370	Missense_Mutation	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	593046	18241370	40887613	594	2133										
ZNF676	163223	hgsc.bcm.edu;broad.mit.edu	37	chr19	22363229	22363229	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	gtaaggcttgaggaccagctGaaggctttgccacattcttc	11	10	1	2	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	ZNF676-90	NM_001001411	exon3	c.C1290A	p.F430L	CCAGCTGAAGGCT	.	60	8	29	0	.	0	0	0	0	0	T	22363229	G	T	22363229	3	4	9	1	0	0	0	0	1	0	0	0	18120	1281	45	3	480	3	ZNF676	19	22363229	Missense_Mutation	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	4121859	22363229	36765754	595	2134										
ZNF254	9534	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	24309378	24309378	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	aaacgtgtcaaattattttgCatgctttcacataaaaccca	4	9	2	0	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	ZNF254-90	NM_203282	exon4	c.C576A	p.C192X	ATTTTGCATGCTT	.	111	10	66	0	.	8	7	1	0	0	A	24309378	C	A	24309378	4	1	9	1	0	0	0	0	0	1	0	0	17835	718	25	3	590	3	ZNF254	19	24309378	Nonsense_Mutation	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	1946149	24309378	34819605	596	2135										
LRP3	4037	hgsc.bcm.edu;broad.mit.edu	37	chr19	33696766	33696766	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	gcttcaatgccacctaccagGtgaagggctattgcctcccc	9	15	1	1	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	LRP3-92	NM_002333	exon5	c.G1090T	p.V364L	TACCAGGTGAAGG	.	83	6	35	0	.	27	19	8	0	0	T	33696766	G	T	33696766	3	4	9	1	0	0	0	0	1	0	0	0	8985	1261	44	3	1108	3	LRP3	19	33696766	Missense_Mutation	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	9387388	33696766	25432217	597	2136										
FFAR3	2865	broad.mit.edu;mdanderson.org	37	chr19	35850698	35850698	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	gggctctggggccagtggcaGcaggagagcagcatggagct	19	9	1	1	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	FFAR3-90	NM_005304	exon2	c.G906T	p.Q302H	GTGGCAGCAGGAG	.	923	106	645	1	.	0	0	0	0	0	T	35850698	G	T	35850698	3	4	9	1	0	0	0	0	1	0	0	0	5848	962	34	3	908	3	FFAR3	19	35850698	Missense_Mutation	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	2153932	35850698	23278285	598	2137										
ZFP14	57677	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	36831144	36831144	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	tattaaattccattatgaatCttctgatgctgagtaaggtg	8	5	2	3	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	ZFP14-91	NM_020917	exon5	c.G1584T	p.K528N	ATGAATCTTCTGA	.	102	16	83	0	.	4	4	0	0	0	A	36831144	C	A	36831144	3	1	9	1	0	0	0	0	1	0	0	0	17676	912	32	3	21	3	ZFP14	19	36831144	Missense_Mutation	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	980446	36831144	22297839	599	2138										
SIPA1L3	23094	hgsc.bcm.edu	37	chr19	38573333	38573333	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	acgggtgcttcggccgcttcCgccgcctcggccatggcctc	13	18	0	0	rs61729132	byfrequency	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	SIPA1L3-91	NM_015073	exon3	c.C1128T	p.S376S	CGCTTCCGCCGCC	.	65	35	3	0	C|0.998;T|0.002	1	1	0	0	0	T	38573333	C	T	38573333	2	4	9	1	0	0	0	0	0	0	0	1	14366	639	23	1		1	SIPA1L3	19	38573333	Silent	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	1742189	38573333	20555650	600	2139										
CATSPERG	57828	bcgsc.ca;mdanderson.org	37	chr19	38858328	38858328	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	ctgtccctggtagctatgttCtgctggtggtgggtggcggg	18	8	1	0	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	CATSPERG-92	NM_021185	exon25	c.C2842A	p.L948M	TATGTTCTGCTGG	.	188	78	101	4	.	0	0	0	0	0	A	38858328	C	A	38858328	3	1	9	1	0	0	0	0	1	0	0	0	2698	912	32	3	2936	3	CATSPERG	19	38858328	Missense_Mutation	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	284995	38858328	20270655	601	2140										
FBXO17	115290	hgsc.bcm.edu	37	chr19	39440918	39440918	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	agcgcgtccagggccagggaTgggtccgccggcagccgtcg	18	14	0	0	rs2304117	byfrequency	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	FBXO17-226	NM_148169	exon2	c.A69G	p.P23P	CAGGGATGGGTCC	.	20	9	0	0	T|0.545;C|0.455	0	0	0	0	0	C	39440918	T	C	39440918	2	2	9	1	0	0	0	0	0	0	0	1	5749	1451	51	4		4	FBXO17	19	39440918	Silent	SNP	T	TCGA-OR-A5JA-01A-11D-A29I-10	582590	39440918	19688065	602	2141										
CYP2B6	1555	broad.mit.edu;ucsc.edu	37	chr19	41518259	41518259	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	cacatcgccctccagagcttCatgaccgagccaaaatgcca	7	16	1	2	rs138030127	byfrequency;alternate_allele	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	CYP2B6-92	NM_000767	exon7	c.C1021A	p.H341N	GAGCTTCATGACC	.	126	16	74	2	C|0.999;G|0.001	0	0	0	0	0	A	41518259	C	A	41518259	3	1	9	1	0	0	0	0	1	0	0	0	4170	826	29	3	1047	3	CYP2B6	19	41518259	Missense_Mutation	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	2077341	41518259	17610724	603	2142										
ARHGEF1	9138	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	42410903	42410903	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	gacccctcctgtctcagcttGgggggaactctgtcccccag	11	16	2	0	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	ARHGEF1-293	NM_199002	exon28	c.G2749T	p.G917W	CAGCTTGGGGGGA	.	137	31	79	0	.	37	30	7	0	0	T	42410903	G	T	42410903	3	4	9	1	0	0	0	0	1	0	0	0	893	1348	47	3	2859	3	ARHGEF1	19	42410903	Missense_Mutation	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	892644	42410903	16718080	604	2143										
LIPE	3991	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr19	42907077	42907078	+	Frame_Shift_Ins	INS	-	-	C													0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	ccgacgacgtctcggagtttINScccctcaggctcaagtccct					novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	LIPE-154	NM_005357	exon9	c.2649_2650insG	p.G883fs	GGAGTTTCCCCTC	.	39	20	29	0	.	0	0	0	0	0	C	42907078	-	C	42907077	7	5	9	1	0	1	1	0	0	0	0	0	8845	1770	62	0	589	0	LIPE	19	42907077	Frame_Shift_Ins	INS	-	TCGA-OR-A5JA-01A-11D-A29I-10	496174	42907077	16221906	605	2144										
CKM	1158	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	45822926	45822926	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	gtcggggtactcctcctcagGcttgtaattcagcttgaact	10	11	2	1	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	CKM-91	NM_001824	exon2	c.C46A	p.P16T	CCTCAGGCTTGTA	.	372	106	283	1	.	0	0	0	0	0	T	45822926	G	T	45822926	3	4	9	1	0	0	0	0	1	0	0	0	3454	1203	42	3	1127	3	CKM	19	45822926	Missense_Mutation	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	2915849	45822926	13306057	606	2145										
PTGIR	5739	hgsc.bcm.edu	37	chr19	47127324	47127324	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	tcggtggccgccagtccggtCaccagcaccgcgaaggccga	14	16	1	0	rs2229128	byfrequency	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	PTGIR-522	NM_000960	exon2	c.G159C	p.V53V	TCCGGTCACCAGC	.	16	16	1	0	C|0.254;G|0.746	2	0	2	0	0	G	47127324	C	G	47127324	2	3	9	1	0	0	0	0	0	0	0	1	12784	813	29	3		3	PTGIR	19	47127324	Silent	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	1304398	47127324	12001659	607	2146										
RASIP1	54922	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	49227597	49227597	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	agctgaccaggagtcaccttGagcagggaagtgcggggcac	16	10	1	2	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	RASIP1-228	NM_017805	exon10	c.C2541A	p.L847L	CACCTTGAGCAGG	.	189	51	137	0	.	1	0	1	0	0	T	49227597	G	T	49227597	2	4	9	1	0	0	0	0	0	0	0	1	13113	1277	45	3		3	RASIP1	19	49227597	Silent	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	2100273	49227597	9901386	608	2147										
KCNA7	3743	hgsc.bcm.edu	37	chr19	49575618	49575618	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	gccggccgccgcagccgcccAccggactggtagtagtagag	15	15	0	1	rs71352730	byfrequency	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	KCNA7-90	NM_031886	exon1	c.T225C	p.G75G	CCGCCCACCGGAC	.	32	14	4	0	A|0.868;G|0.132	0	0	0	0	0	G	49575618	A	G	49575618	2	3	9	1	0	0	0	0	0	0	0	1	8029	146	6	4		4	KCNA7	19	49575618	Silent	SNP	A	TCGA-OR-A5JA-01A-11D-A29I-10	348021	49575618	9553365	609	2148										
SLC6A16	28968	broad.mit.edu;bcgsc.ca	37	chr19	49793931	49793931	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	accatcatggtcacaaagatGattagcagcacaactggaca	8	10	2	2	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	SLC6A16-94	NM_014037	exon11	c.C1872A	p.I624I	AAAGATGATTAGC	.	193	14	161	1	.	0	0	0	0	0	T	49793931	G	T	49793931	2	4	9	1	0	0	0	0	0	0	0	1	14714	1280	45	3		3	SLC6A16	19	49793931	Silent	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	218313	49793931	9335052	610	2149										
SCAF1	58506	broad.mit.edu;bcgsc.ca	37	chr19	50157655	50157655	+	Silent	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	gccaacctggcgagccgagcGaaggcccaggagctgatcca	14	14	0	1	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	SCAF1-68	NM_021228	exon8	c.G3366T	p.A1122A	CCGAGCGAAGGCC	.	230	10	176	0	.	110	104	5	1	0	T	50157655	G	T	50157655	2	4	9	1	0	0	0	0	0	0	0	1	13903	1045	37	2		2	SCAF1	19	50157655	Silent	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	363724	50157655	8971328	611	2150										
ASPDH	554235	hgsc.bcm.edu	37	chr19	51015404	51015404	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	tggccgcacccaggaggctcTgccagaaggccgtgacggtg	16	13	1	2	rs12977172	byfrequency	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	ASPDH-90	NM_001114598	exon6	c.A797G	p.Q266R	AGGCTCTGCCAGA	.	19	19	0	0	T|0.228;C|0.772	0	0	0	0	0	C	51015404	T	C	51015404	3	2	9	1	0	0	0	0	1	0	0	0	1052	1580	55	4	62	4	ASPDH	19	51015404	Missense_Mutation	SNP	T	TCGA-OR-A5JA-01A-11D-A29I-10	857749	51015404	8113579	612	2151										
NKG7	4818	hgsc.bcm.edu;broad.mit.edu	37	chr19	51875493	51875493	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	ggggaagcaggacaggaccaGgaagctcacggacaccaggg	17	10	1	0	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	NKG7-90	NM_005601	exon2	c.C226A	p.L76M	GGACCAGGAAGCT	.	98	5	80	0	.	1	1	0	0	0	T	51875493	G	T	51875493	3	4	9	1	0	0	0	0	1	0	0	0	10472	991	35	3	283	3	NKG7	19	51875493	Missense_Mutation	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	860089	51875493	7253490	613	2152										
ZNF880	400713	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	52888417	52888417	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	tgcaatgaatgtggcaaggtCttcagccacaagttatacct	9	9	2	1	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	.	NM_001145434	exon4	c.C1584A	p.V528V	CAAGGTCTTCAGC	.	180	17	146	0	.	23	21	2	0	0	A	52888417	C	A	52888417	2	1	9	1	0	0	0	0	0	0	0	1	18234	900	32	3		3	ZNF880	19	52888417	Silent	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	1012924	52888417	6240566	614	2153										
CNOT3	4849	ucsc.edu;bcgsc.ca	37	chr19	54656063	54656063	+	Splice_Site	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	gctgcacctgaccgagcgagGtgagggacccaggatggtgg	18	10	0	2	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	CNOT3-93	NM_014516	exon14	c.1705+1G>A	.	AGCGAGGTGAGGG	.	268	33	167	3	.	3	1	2	0	0	A	54656063	G	A	54656063	5	1	9	1	0	0	0	0	0	0	1	0	3626	1275	44	3	1756	3	CNOT3	19	54656063	Splice_Site	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	1767646	54656063	4472920	615	2154										
RPS9	6203	broad.mit.edu	37	chr19	54705408	54705408	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	ggagggtcaaatttaccctgGccaagatccgcaaggccgcc	12	13	1	1	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	RPS9-153	NM_001013	exon3	c.G151T	p.A51S	ACCCTGGCCAAGA	.	107	4	56	0	.	1906	1903	0	1	2	T	54705408	G	T	54705408	3	4	9	1	0	0	0	0	1	0	0	0	13697	1203	42	3	157	3	RPS9	19	54705408	Missense_Mutation	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	49345	54705408	4423575	616	2155										
LILRA3	11026	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	54803031	54803031	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	ctcacctgggaccaggagccCcaggagatcactgggtagag	14	12	2	2	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	LILRA3-91	NM_006865	exon4	c.G646T	p.G216W	GGAGCCCCAGGAG	.	228	29	174	1	.	2	2	0	0	0	A	54803031	C	A	54803031	3	1	9	1	0	0	0	0	1	0	0	0	8809	623	22	3	689	3	LILRA3	19	54803031	Missense_Mutation	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	97623	54803031	4325952	617	2156										
SYT5	6861	hgsc.bcm.edu	37	chr19	55684927	55684927	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	gcaatgggccgccgcgggttGgccagcatgtccgcccagtg	16	14	0	0	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	SYT5-90	NM_003180	exon9	c.C1086A	p.A362A	CGGGTTGGCCAGC	.	14	5	1	0	.	0	0	0	0	0	T	55684927	G	T	55684927	2	4	9	1	0	0	0	0	0	0	0	1	15514	1335	47	3		3	SYT5	19	55684927	Silent	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	881896	55684927	3444056	618	2157										
NLRP13	126204	broad.mit.edu	37	chr19	56410249	56410249	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	ttcacattatgattatggctGagggcattagccagctctcc	9	10	2	2	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	NLRP13-211	NM_176810	exon10	c.C2844A	p.L948L	ATGGCTGAGGGCA	.	125	5	70	0	.	0	0	0	0	0	T	56410249	G	T	56410249	2	4	9	1	0	0	0	0	0	0	0	1	10504	1277	45	3		3	NLRP13	19	56410249	Silent	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	725322	56410249	2718734	619	2158										
ZNF667	63934	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	56952598	56952598	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	aactccgactatatgccttcCcacatttactacattcatag	3	13	1	0	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	ZNF667-91	NM_022103	exon5	c.G1766T	p.G589V	GCCTTCCCACATT	.	111	27	65	0	.	13	7	6	0	0	A	56952598	C	A	56952598	3	1	9	1	0	0	0	0	1	0	0	0	18111	623	22	3	70	3	ZNF667	19	56952598	Missense_Mutation	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	542349	56952598	2176385	620	2159										
ZNF835	90485	hgsc.bcm.edu	37	chr19	57175988	57175988	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	ccgcagtcggcgcagcggtgCggcttctcgcccgtgtgcgt	16	15	1	0	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	ZNF835-72	NM_001005850	exon2	c.G579T	p.P193P	GCGGTGCGGCTTC	.	55	33	2	0	.	0	0	0	0	0	A	57175988	C	A	57175988	2	1	9	1	0	0	0	0	0	0	0	1	18223	755	27	2		2	ZNF835	19	57175988	Silent	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	223390	57175988	1952995	621	2160										
ZNF419	79744	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr19	58004403	58004403	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	acctatcagagaagtccttgCaaagcagggaggttgggaag	14	7	1	1	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	ZNF419-90	NM_001098491	exon5	c.C481A	p.Q161K	TCCTTGCAAAGCA	.	448	43	291	0	.	8	6	2	0	0	A	58004403	C	A	58004403	3	1	9	1	0	0	0	0	1	0	0	0	17933	711	25	3	499	3	ZNF419	19	58004403	Missense_Mutation	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	828415	58004403	1124580	622	2161										
ZNF814	730051	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	58384936	58384936	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	actaaaagatttcccacattCtccacactcataaggcctct	3	14	3	1	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	.	NM_001144989	exon3	c.G1822T	p.E608X	CACATTCTCCACA	.	116	31	100	0	.	5	2	3	0	0	A	58384936	C	A	58384936	4	1	9	1	0	0	0	0	0	1	0	0	18213	922	32	3	749	3	ZNF814	19	58384936	Nonsense_Mutation	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	380533	58384936	744047	623	2162										
C19orf18	147685	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	58485719	58485719	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	tccagtgggatggagtccatCtgcatacggcaagcataaat	11	9	1	0	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	C19orf18-91	NM_152474	exon1	c.G82T	p.D28Y	GTCCATCTGCATA	.	138	32	102	1	.	0	0	0	0	0	A	58485719	C	A	58485719	3	1	9	1	0	0	0	0	1	0	0	0	1916	913	32	3	589	3	C19orf18	19	58485719	Missense_Mutation	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	100783	58485719	643264	624	2163										
RPS5	6193	broad.mit.edu;bcgsc.ca	37	chr19	58905869	58905869	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	ctgctgtcttcctaggccatCtggctgctgtgcacaggcgc	12	14	2	0	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	RPS5-90	NM_001009	exon5	c.C453A	p.I151I	GGCCATCTGGCTG	.	247	15	203	1	.	2	2	0	0	0	A	58905869	C	A	58905869	2	1	9	1	0	0	0	0	0	0	0	1	13683	903	32	3		3	RPS5	19	58905869	Silent	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	420150	58905869	223114	625	2164										
ZNF584	201514	bcgsc.ca	37	chr19	58929136	58929136	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	gaggacagggcacatgggaaGgtcgttagctgctagcaccg	16	9	0	0	rs3764534	byfrequency;alternate_allele	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	ZNF584-90	NM_173548	exon4	c.G1251T	p.K417N	TGGGAAGGTCGTT	.	258	24	188	1	G|0.453;A|0.547	44	39	5	0	0	T	58929136	G	T	58929136	3	4	9	1	0	0	0	0	1	0	0	0	18053	991	35	3	1265	3	ZNF584	19	58929136	Missense_Mutation	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	23267	58929136	199847	626	2165										
UBOX5	22888	broad.mit.edu;bcgsc.ca	37	chr20	3090889	3090889	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	gggcagctggtacaccggctCctttttgaagtagggagaaa	14	8	0	2	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	UBOX5-227	NM_014948	exon5	c.G1489T	p.E497X	CCGGCTCCTTTTT	.	106	40	84	2	.	21	14	7	0	0	A	3090889	C	A	3090889	4	1	9	1	0	0	0	0	0	1	0	0	16932	864	30	3	140	3	UBOX5	20	3090889	Nonsense_Mutation	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10		3090889	59934631	627	2166										
ADAM33	80332	broad.mit.edu;bcgsc.ca	37	chr20	3654768	3654768	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	ttggtgtggttcaagtttcgGtgccgagtcaagaactggga	15	6	2	1	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	ADAM33-291	NM_025220	exon8	c.C681A	p.H227Q	GTTTCGGTGCCGA	.	160	7	175	1	.	0	0	0	0	0	T	3654768	G	T	3654768	3	4	9	1	0	0	0	0	1	0	0	0	250	1252	44	3	1820	3	ADAM33	20	3654768	Missense_Mutation	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	563879	3654768	59370752	628	2167										
SEC23B	10483	ucsc.edu;bcgsc.ca	37	chr20	18491542	18491542	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	gatggtgtgcgttttagttgGaacgtgtggccttccagccg	15	8	0	0	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	SEC23B-91	NM_006363	exon2	c.G63T	p.W21C	TAGTTGGAACGTG	.	213	46	301	5	.	15	11	3	1	0	T	18491542	G	T	18491542	3	4	9	1	0	0	0	0	1	0	0	0	14027	1183	41	3	65	3	SEC23B	20	18491542	Missense_Mutation	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	14836774	18491542	44533978	629	2168										
CST9	128822	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr20	23584241	23584241	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	agctgtggacctgaggaaagCtgatgccctgtcttacgttg	13	9	1	2	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	CST9-91	NM_001008693	exon2	c.G386T	p.S129I	GGAAAGCTGATGC	.	170	34	205	1	.	0	0	0	0	0	A	23584241	C	A	23584241	3	1	9	1	0	0	0	0	1	0	0	0	3985	797	28	3	97	3	CST9	20	23584241	Missense_Mutation	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	5092699	23584241	39441279	630	2169										
NECAB3	63941	broad.mit.edu	37	chr20	32248098	32248098	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	cctgggcctccagggtatctGacgccccctccagcgagctc	11	18	1	1	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	NECAB3-91	NM_031232	exon6	c.C491A	p.S164X	GTATCTGACGCCC	.	40	8	51	1	.	38	28	10	0	0	T	32248098	G	T	32248098	4	4	9	1	0	0	0	0	0	1	0	0	10335	1294	45	3	727	3	NECAB3	20	32248098	Nonsense_Mutation	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	8663857	32248098	30777422	631	2170										
NCOA6	23054	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr20	33328359	33328359	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	gccaggtaagctgggtcctgCtgaggcagtgcccgggccca	16	13	0	1	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	NCOA6-292	NM_014071	exon11	c.G5701T	p.A1901S	GTCCTGCTGAGGC	.	38	22	41	0	.	22	10	12	0	0	A	33328359	C	A	33328359	3	1	9	1	0	0	0	0	1	0	0	0	10262	797	28	3	510	3	NCOA6	20	33328359	Missense_Mutation	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	1080261	33328359	29697161	632	2171										
DHX35	60625	mdanderson.org	37	chr20	37630412	37630412	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	atcaaaatgaaaccagtgatCcagcaagggatacatgtgtg	10	7	1	2	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	DHX35-226	NM_021931	exon9	c.C682A	p.P228T	AGTGATCCAGCAA	.	36	12	37	0	.	6	5	1	0	0	A	37630412	C	A	37630412	3	1	9	1	0	0	0	0	1	0	0	0	4519	855	30	3	716	3	DHX35	20	37630412	Missense_Mutation	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	4302053	37630412	25395108	633	2172										
PLCG1	5335	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr20	39794149	39794149	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	atctactactctgaggagacCagcagtgaccagggcaacga	11	11	2	3	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	PLCG1-911	NM_182811	exon15	c.C1569A	p.T523T	GGAGACCAGCAGT	.	115	50	165	1	.	8	1	7	0	0	A	39794149	C	A	39794149	2	1	9	1	0	0	0	0	0	0	0	1	12064	581	21	3		3	PLCG1	20	39794149	Silent	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	2163737	39794149	23231371	634	2173										
SDC4	6385	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr20	43956014	43956014	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	catgagcagtaggatcaggaAgacggcaaagaggatgccca	14	8	1	3	rs149518436		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	SDC4-90	NM_002999	exon5	c.T487C	p.F163L	TCAGGAAGACGGC	.	80	42	83	1	A|1.000;G|0.000	71	26	45	0	0	G	43956014	A	G	43956014	3	3	9	1	0	0	0	0	1	0	0	0	13989	72	3	4	113	4	SDC4	20	43956014	Missense_Mutation	SNP	A	TCGA-OR-A5JA-01A-11D-A29I-10	4161865	43956014	19069506	635	2174										
AURKA	6790	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr20	54961553	54961553	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	acaaggaaattgctgagtcaCgagaacacgttttggacctc	10	9	1	2	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	AURKA-1601	NM_198437	exon3	c.G79A	p.V27M	GAGTCACGAGAAC	.	106	54	90	0	.	8	2	6	0	0	T	54961553	C	T	54961553	3	4	9	1	0	0	0	0	1	0	0	0	1222	536	19	1	1160	1	AURKA	20	54961553	Missense_Mutation	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	11005539	54961553	8063967	636	2175										
PRPF6	24148	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr20	62616311	62616311	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	gtggaccctacgagaaagatGatgaggaagcagatgctatc	13	7	0	5	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	PRPF6-70	NM_012469	exon3	c.G292T	p.D98Y	AAAGATGATGAGG	.	55	10	78	0	.	25	17	8	0	0	T	62616311	G	T	62616311	3	4	9	1	0	0	0	0	1	0	0	0	12606	1290	45	3	302	3	PRPF6	20	62616311	Missense_Mutation	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	7654758	62616311	409209	637	2176										
NPBWR2	2832	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr20	62737957	62737957	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	aacacgttggtcaccgtcttCatcttgggcgcccttaggat	10	12	4	0	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	NPBWR2-153	NM_005286	exon1	c.G228T	p.M76I	CGTCTTCATCTTG	.	67	10	75	1	.	0	0	0	0	0	A	62737957	C	A	62737957	3	1	9	1	0	0	0	0	1	0	0	0	10598	826	29	3	776	3	NPBWR2	20	62737957	Missense_Mutation	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	121646	62737957	287563	638	2177										
SAMSN1	64092	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr21	15893519	15893519	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	gaattattccgaaaacgatcGaaattcccaaaactgctgct	6	10	0	0	rs192978628	alternate_allele	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	SAMSN1-94	NM_001256370	exon3	c.C285A	p.F95L	ACGATCGAAATTC	.	112	27	147	2	G|0.999;A|0.000	0	0	0	0	0	T	15893519	G	T	15893519	3	4	9	1	0	0	0	0	1	0	0	0	13865	1049	37	2	1068	2	SAMSN1	21	15893519	Missense_Mutation	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10		15893519	32236376	639	2178										
SYNJ1	8867	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr21	34011381	34011381	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	gagcaggcgggggcaaagaaGactgcggaggaaaagcagcc	18	8	0	2	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	SYNJ1-232	NM_203446	exon31	c.C3869A	p.S1290Y	AAAGAAGACTGCG	.	37	7	49	0	.	2	2	0	0	0	T	34011381	G	T	34011381	3	4	9	1	0	0	0	0	1	0	0	0	15489	942	33	3	1002	3	SYNJ1	21	34011381	Missense_Mutation	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	18117862	34011381	14118514	640	2179										
TRPM2	7226	broad.mit.edu;bcgsc.ca	37	chr21	45838383	45838383	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	aggagaactacctccagaacCgacagttccagcaaaagcag	9	12	0	2	rs143493112	byfrequency	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	TRPM2-92	NM_003307	exon22	c.C3406T	p.R1136X	CAGAACCGACAGT	.	218	7	295	1	C|0.998;T|0.002	1	1	0	0	0	T	45838383	C	T	45838383	4	4	9	1	0	0	0	0	0	1	0	0	16624	644	23	1	3492	1	TRPM2	21	45838383	Nonsense_Mutation	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	11827002	45838383	2291512	641	2180										
KRTAP10-3	386682	bcgsc.ca	37	chr21	45978319	45978319	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	gcagcaggcctgctggcaggGggaggatgtgcagcaagctg	19	9	0	0	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	KRTAP10-3-91	NM_198696	exon1	c.C280G	p.P94A	GGCAGGGGGAGGA	.	86	71	91	5	.	0	0	0	0	0	C	45978319	G	C	45978319	3	2	9	1	0	0	0	0	1	0	0	0	8531	1232	43	3	389	3	KRTAP10-3	21	45978319	Missense_Mutation	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	139936	45978319	2151576	642	2181										
KRTAP10-4	386672	ucsc.edu	37	chr21	45993851	45993851	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	ccctgctgcccagtgacctgCgagcccagcccctgccaatc	9	20	0	1	rs543299		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	KRTAP10-4-90	NM_198687	exon1	c.C216T	p.C72C	GACCTGCGAGCCC	.	31	25	16	5	C|1.000;|0.000	0	0	0	0	0	T	45993851	C	T	45993851	2	4	9	1	0	0	0	0	0	0	0	1	8532	776	27	1		1	KRTAP10-4	21	45993851	Silent	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	15532	45993851	2136044	643	2182										
POTEH	23784	broad.mit.edu	37	chr22	16266963	16266963	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	attctcagtgtcaggaaattGctggctttcaggtgttctgc	11	8	4	0	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	POTEH-1	NM_001136213	exon9	c.C1486A	p.Q496K	GAAATTGCTGGCT	.	1275	19	1151	2	.	0	0	0	0	0	T	16266963	G	T	16266963	3	4	9	1	0	0	0	0	1	0	0	0	12296	1328	46	3	159	3	POTEH	22	16266963	Missense_Mutation	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10		16266963	35037603	644	2183										
CLDN5	7122	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr22	19511638	19511638	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	cacgacatccacagccccttCcaggtggtctgcgccgtcac	9	18	2	0	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	CLDN5-492	NM_001130861	exon1	c.G396T	p.W132C	CCCCTTCCAGGTG	.	67	56	56	0	.	2	2	0	0	0	A	19511638	C	A	19511638	3	1	9	1	0	0	0	0	1	0	0	0	3494	856	30	3	519	3	CLDN5	22	19511638	Missense_Mutation	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	3244675	19511638	31792928	645	2184										
DGCR8	54487	broad.mit.edu;bcgsc.ca	37	chr22	20080378	20080378	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	tcggtgaccattgatggtgtGacttacggatctggaactgc	13	8	1	3	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	DGCR8-90	NM_022720	exon8	c.G1653T	p.V551V	TGGTGTGACTTAC	.	84	5	113	1	.	13	12	1	0	0	T	20080378	G	T	20080378	2	4	9	1	0	0	0	0	0	0	0	1	4475	1277	45	3		3	DGCR8	22	20080378	Silent	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	568740	20080378	31224188	646	2185										
SERPIND1	3053	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr22	21140341	21140341	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	agctggagaagaactacaatCtagtggagtccctgaagttg	12	7	1	3	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	SERPIND1-414	NM_000185	exon4	c.C1213A	p.L405I	TACAATCTAGTGG	.	112	60	123	2	.	0	0	0	0	0	A	21140341	C	A	21140341	3	1	9	1	0	0	0	0	1	0	0	0	14145	912	32	3	1223	3	SERPIND1	22	21140341	Missense_Mutation	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	1059963	21140341	30164225	647	2186										
IGLL1	3543	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr22	23915564	23915564	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	tcgggcgtcaggctcaggtaGctgctggccgcgtacttgtt	15	11	2	0	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	IGLL1-90	NM_020070	exon3	c.C531A	p.S177R	CAGGTAGCTGCTG	.	139	8	126	0	.	12	12	0	0	0	T	23915564	G	T	23915564	3	4	9	1	0	0	0	0	1	0	0	0	7614	962	34	3	114	3	IGLL1	22	23915564	Missense_Mutation	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	2775223	23915564	27389002	648	2187										
MMP11	4320	broad.mit.edu;bcgsc.ca	37	chr22	24121481	24121481	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	caggaagccccccggcctgcCagcagcctcaggcctccccg	11	21	1	0	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	MMP11-291	NM_005940	exon2	c.C216A	p.A72A	GCCTGCCAGCAGC	.	90	25	48	1	.	1	1	0	0	0	A	24121481	C	A	24121481	2	1	9	1	0	0	0	0	0	0	0	1	9678	581	21	3		3	MMP11	22	24121481	Silent	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	205917	24121481	27183085	649	2188										
UPB1	51733	hgsc.bcm.edu;broad.mit.edu	37	chr22	24911294	24911294	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	cttatgtacagcatcaacggGgctgagatcatcttcaaccc	8	12	4	1	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	UPB1-92	NM_016327	exon6	c.G747T	p.G249G	CAACGGGGCTGAG	.	97	5	152	0	.	0	0	0	0	0	T	24911294	G	T	24911294	2	4	9	1	0	0	0	0	0	0	0	1	17040	1219	43	3		3	UPB1	22	24911294	Silent	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	789813	24911294	26393272	650	2189										
MYO18B	84700	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr22	26423258	26423258	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	acgaacgcaagaccaaagtgGacttcgatgacttcctccca	8	13	0	2	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	MYO18B-142	NM_032608	exon43	c.G7318T	p.D2440Y	AAAGTGGACTTCG	.	154	73	203	1	.	0	0	0	0	0	T	26423258	G	T	26423258	3	4	9	1	0	0	0	0	1	0	0	0	10094	1174	41	3	7484	3	MYO18B	22	26423258	Missense_Mutation	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	1511964	26423258	24881308	651	2190										
DEPDC5	9681	ucsc.edu;bcgsc.ca	37	chr22	32266663	32266663	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	ccatggacagaggcaacagcCagacctttgggaactcccag	11	13	0	2	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	DEPDC5-519	NM_001242896	exon34	c.C3418A	p.Q1140K	AACAGCCAGACCT	.	129	54	130	2	.	0	0	0	0	0	A	32266663	C	A	32266663	3	1	9	1	0	0	0	0	1	0	0	0	4453	595	21	3	3539	3	DEPDC5	22	32266663	Missense_Mutation	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	5843405	32266663	19037903	652	2191										
TAB1	10454	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr22	39811035	39811035	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	agcagccaagctggacagatGacctgcctctctgccacctc	9	16	1	2	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	TAB1-522	NM_153497	exon2	c.G58T	p.D20Y	ACAGATGACCTGC	.	69	11	86	0	.	6	6	0	0	0	T	39811035	G	T	39811035	3	4	9	1	0	0	0	0	1	0	0	0	15532	1290	45	3	64	3	TAB1	22	39811035	Missense_Mutation	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	7544372	39811035	11493531	653	2192										
TNRC6B	23112	ucsc.edu;bcgsc.ca	37	chr22	40657846	40657846	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	tctcttttagtgcccgaagtGacgaaaccaagtttaagcca	8	10	1	1	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	TNRC6B-22	NM_001024843	exon7	c.G234T	p.V78V	CGAAGTGACGAAA	.	161	76	251	3	.	0	0	0	0	0	T	40657846	G	T	40657846	2	4	9	1	0	0	0	0	0	0	0	1	16378	1277	45	3		3	TNRC6B	22	40657846	Silent	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	846811	40657846	10646720	654	2193										
TNRC6B	23112	bcgsc.ca;mdanderson.org	37	chr22	40666127	40666127	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	acatttcctttctttatagtCtggagcaaaagcacaccacc	5	12	2	0	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	TNRC6B-22	NM_001162501	exon6	c.C2808A	p.V936V	TATAGTCTGGAGC	.	33	15	31	1	.	0	0	0	0	0	A	40666127	C	A	40666127	2	1	9	1	0	0	0	0	0	0	0	1	16378	927	32	3		3	TNRC6B	22	40666127	Silent	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	8281	40666127	10638439	655	2194										
MOV10L1	54456	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr22	50552817	50552817	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	tgtatttttccaggaataaaGgagacattcctcaaaactta	6	7	1	1	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	MOV10L1-93	NM_018995	exon7	c.G892T	p.G298X	AATAAAGGAGACA	.	36	21	65	0	.	0	0	0	0	0	T	50552817	G	T	50552817	4	4	9	1	0	0	0	0	0	1	0	0	9747	1001	35	3	959	3	MOV10L1	22	50552817	Nonsense_Mutation	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	9886690	50552817	751749	656	2195										
ARSH	347527	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	2942061	2942061	+	Splice_Site	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	tgtgtctctgaccctctccaGgtaaaatcctggatgccctg	9	13	2	1	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	ARSH-130	NM_001011719	exon6	c.902-1G>T	.	TCTCCAGGTAAAA	.	272	59	205	0	.	0	0	0	0	0	T	2942061	G	T	2942061	5	4	9	1	0	0	0	0	0	0	1	0	994	1014	35	3	923	3	ARSH	23	2942061	Splice_Site	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10		2942061	152328499	657	2196										
MXRA5	25878	broad.mit.edu;bcgsc.ca	37	chrX	3241451	3241451	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	aaacactctgcgaccttctgCaacattggtctctggttctt	7	12	4	0	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	MXRA5-136	NM_015419	exon5	c.G2275T	p.A759S	CTTCTGCAACATT	.	151	7	92	0	.	3	3	0	0	0	A	3241451	C	A	3241451	3	1	9	1	0	0	0	0	1	0	0	0	10031	710	25	3	6223	3	MXRA5	23	3241451	Missense_Mutation	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	299390	3241451	152029109	658	2197										
MXRA5	25878	bcgsc.ca	37	chrX	3242694	3242694	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	tccgtttggttcaagtgaatCttgtacacatccattggttt	8	8	2	1	rs112265369	bycluster;byfrequency;alternate_allele	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	MXRA5-136	NM_015419	exon5	c.G1032T	p.K344N	GTGAATCTTGTAC	.	281	65	219	4	C|0.999;T|0.001	1	0	1	0	0	A	3242694	C	A	3242694	3	1	9	1	0	0	0	0	1	0	0	0	10031	912	32	3	7466	3	MXRA5	23	3242694	Missense_Mutation	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	1243	3242694	152027866	659	2198										
WWC3	55841	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	10106875	10106875	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	gcgccctccgtgagctgcggCagcggttggaggacgcccag	17	14	0	1	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	WWC3-134	NM_015691	exon21	c.C2983A	p.Q995K	CTGCGGCAGCGGT	.	239	60	119	0	.	7	7	0	0	0	A	10106875	C	A	10106875	3	1	9	1	0	0	0	0	1	0	0	0	17451	711	25	3	3061	3	WWC3	23	10106875	Missense_Mutation	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	6864181	10106875	145163685	660	2199										
MID1	4281	ucsc.edu;bcgsc.ca	37	chrX	10535274	10535274	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	tcatggtgttggcgtcaaagGcccgctcccgacgggtctcg	14	13	3	0	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	MID1-229	NM_001193277	exon2	c.C314A	p.A105D	TCAAAGGCCCGCT	.	219	126	163	2	.	0	0	0	0	0	T	10535274	G	T	10535274	3	4	9	1	0	0	0	0	1	0	0	0	9604	1203	42	3	1725	3	MID1	23	10535274	Missense_Mutation	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	428399	10535274	144735286	661	2200										
FRMPD4	9758	bcgsc.ca	37	chrX	12736870	12736870	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	ccctgtttggcacattgagaGatggatgccatcggctcccc	11	13	0	2	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	FRMPD4-263	NM_014728	exon16	c.G3925T	p.D1309Y	TTGAGAGATGGAT	.	369	49	270	4	.	0	0	0	0	0	T	12736870	G	T	12736870	3	4	9	1	0	0	0	0	1	0	0	0	6078	942	33	3	3987	3	FRMPD4	23	12736870	Missense_Mutation	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	2201596	12736870	142533690	662	2201										
DDX53	168400	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	23019100	23019100	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	tacacccactagagagttggCtcttcacgtggaagctgaat	10	10	2	2	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	DDX53-228	NM_182699	exon1	c.C926A	p.A309D	AGTTGGCTCTTCA	.	257	57	187	0	.	0	0	0	0	0	A	23019100	C	A	23019100	3	1	9	1	0	0	0	0	1	0	0	0	4377	797	28	3	928	3	DDX53	23	23019100	Missense_Mutation	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	10282230	23019100	132251460	663	2202										
MAGEB10	139422	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	27840275	27840275	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	agagcccatgctgaaaccagCaagatgaaagttcttgagtt	10	8	1	5	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	MAGEB10-130	NM_182506	exon3	c.C852A	p.S284R	AACCAGCAAGATG	.	116	15	80	0	.	0	0	0	0	0	A	27840275	C	A	27840275	3	1	9	1	0	0	0	0	1	0	0	0	9201	709	25	3	854	3	MAGEB10	23	27840275	Missense_Mutation	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	4821175	27840275	127430285	664	2203										
MAGEB2	4113	broad.mit.edu;bcgsc.ca	37	chrX	30237541	30237541	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	ggggtccgagagcctatgctGaaaccagcaagatgaaagtc	13	9	0	4	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	MAGEB2-131	NM_002364	exon2	c.G844T	p.E282X	TATGCTGAAACCA	.	245	15	211	2	.	0	0	0	0	0	T	30237541	G	T	30237541	4	4	9	1	0	0	0	0	0	1	0	0	9204	1291	45	3	846	3	MAGEB2	23	30237541	Nonsense_Mutation	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	2397266	30237541	125033019	665	2204										
DMD	1756	broad.mit.edu	37	chrX	31697546	31697546	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	actgtatagggaccctccttCcatgactcaagcttggctct	8	13	2	1	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	DMD-265	NM_004006	exon53	c.G7818T	p.W2606C	CTCCTTCCATGAC	.	79	8	62	1	.	0	0	0	0	0	A	31697546	C	A	31697546	3	1	9	1	0	0	0	0	1	0	0	0	4591	856	30	3	3495	3	DMD	23	31697546	Missense_Mutation	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	1460005	31697546	123573014	666	2205										
DMD	1756	broad.mit.edu;bcgsc.ca	37	chrX	32407761	32407761	+	Silent	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	ggctggtttctggaataatcGaaacttcatggagacatctt	10	7	3	1	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	DMD-265	NM_004006	exon32	c.C4375A	p.R1459R	ATAATCGAAACTT	.	109	6	68	0	.	0	0	0	0	0	T	32407761	G	T	32407761	2	4	9	1	0	0	0	0	0	0	0	1	4591	1066	37	2		2	DMD	23	32407761	Silent	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	710215	32407761	122862799	667	2206										
MED14	9282	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	40568698	40568698	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	caatcaggagtttttctattGataagtggtcgatctgcata	9	6	3	1	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	MED14-289	NM_004229	exon10	c.C1187A	p.S396X	TCTATTGATAAGT	.	141	16	98	0	.	8	8	0	0	0	T	40568698	G	T	40568698	4	4	9	1	0	0	0	0	0	1	0	0	9460	1294	45	3	3265	3	MED14	23	40568698	Nonsense_Mutation	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	8160937	40568698	114701862	668	2207										
GPR34	2857	broad.mit.edu;bcgsc.ca	37	chrX	41554930	41554930	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	gacgacaacttcagtcagcaGctggccttactcctcccaca	7	16	2	0	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	GPR34-131	NM_001097579	exon3	c.G44T	p.S15I	TCAGCAGCTGGCC	.	703	25	465	2	.	1	1	0	0	0	T	41554930	G	T	41554930	3	4	9	1	0	0	0	0	1	0	0	0	6709	971	34	3	46	3	GPR34	23	41554930	Missense_Mutation	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	986232	41554930	113715630	669	2208										
MAOA	4128	bcgsc.ca	37	chrX	43590512	43590512	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	ggaagtttgtaggtggatctGgtcaagtgagcgaacggata	16	4	2	1	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	MAOA-194	NM_000240	exon7	c.G670T	p.G224C	GGATCTGGTCAAG	.	267	25	223	3	.	80	70	10	0	0	T	43590512	G	T	43590512	3	4	9	1	0	0	0	0	1	0	0	0	9253	1348	47	3	696	3	MAOA	23	43590512	Missense_Mutation	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	2035582	43590512	111680048	670	2209										
CDK16	5127	ucsc.edu;bcgsc.ca	37	chrX	47086026	47086026	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	caacaaagacatactccaatGaggtggtgacactgtggtac	10	9	0	3	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	CDK16-564	NM_001170460	exon10	c.G1183T	p.E395X	TCCAATGAGGTGG	.	302	58	246	4	.	118	91	27	0	0	T	47086026	G	T	47086026	4	4	9	1	0	0	0	0	0	1	0	0	3138	1291	45	3	1237	3	CDK16	23	47086026	Nonsense_Mutation	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	3495514	47086026	108184534	671	2210										
ZNF182	7569	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	47836739	47836739	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	tgagttctccaatgtacaatGaggtgtgacttcttgctgaa	10	7	2	4	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	ZNF182-132	NM_006962	exon7	c.C747A	p.L249L	TACAATGAGGTGT	.	85	20	53	1	.	6	3	3	0	0	T	47836739	G	T	47836739	2	4	9	1	0	0	0	0	0	0	0	1	17787	1277	45	3		3	ZNF182	23	47836739	Silent	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	750713	47836739	107433821	672	2211										
TBC1D25	4943	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chrX	48417292	48417292	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	tctgtttgcccaggcccattGctagaagactgggacataat	10	10	1	2	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	TBC1D25-131	NM_002536	exon4	c.G396T	p.L132F	CCCATTGCTAGAA	.	232	16	184	1	.	1	1	0	0	0	T	48417292	G	T	48417292	3	4	9	1	0	0	0	0	1	0	0	0	15652	1310	46	3	410	3	TBC1D25	23	48417292	Missense_Mutation	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	580553	48417292	106853268	673	2212										
WDR45	11152	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	48934319	48934319	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	ctcacttgtcatggcgcatgCgcacagaaagcactggcttg	11	12	2	1	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	WDR45-131	NM_007075	exon6	c.G329A	p.R110H	CGCATGCGCACAG	.	445	92	287	2	.	114	114	0	0	0	T	48934319	C	T	48934319	3	4	9	1	0	0	0	0	1	0	0	0	17335	768	27	1	784	1	WDR45	23	48934319	Missense_Mutation	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	517027	48934319	106336241	674	2213										
CCNB3	85417	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	50052072	50052072	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	aagatatgccactttaggaaGccaccagtattgcagacaac	8	10	0	2	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	CCNB3-482	NM_033031	exon5	c.G903T	p.K301N	TAGGAAGCCACCA	.	144	26	86	1	.	1	1	0	0	0	T	50052072	G	T	50052072	3	4	9	1	0	0	0	0	1	0	0	0	2920	962	34	3	917	3	CCNB3	23	50052072	Missense_Mutation	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	1117753	50052072	105218488	675	2214										
HUWE1	10075	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	53607986	53607986	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	tgtagctgctgagcgaacaaCctagtaaagagagaaagaaa	11	6	0	4	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	HUWE1-280	NM_031407	exon43	c.G5521T	p.V1841F	GAACAACCTAGTA	.	129	21	87	0	.	0	0	0	0	0	A	53607986	C	A	53607986	3	1	9	1	0	0	0	0	1	0	0	0	7482	521	18	3	7771	3	HUWE1	23	53607986	Missense_Mutation	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	3555914	53607986	101662574	676	2215										
MTMR8	55613	broad.mit.edu	37	chrX	63579298	63579298	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	aacatacccatgtttctttcCgggctgcacctgaagcctcc	7	15	1	1	rs201096276	alternate_allele	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	MTMR8-195	NM_017677	exon2	c.G134T	p.R45L	TCTTTCCGGGCTG	.	82	5	59	1	.	0	0	0	0	0	A	63579298	C	A	63579298	3	1	9	1	0	0	0	0	1	0	0	0	9977	652	23	2	2032	2	MTMR8	23	63579298	Missense_Mutation	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	9971312	63579298	91691262	677	2216										
AR	367	broad.mit.edu	37	chrX	66765161	66765161	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	cgccagtttgctgctgctgcAgcagcagcagcagcagcagc	13	14	0	0	rs200185441		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	AR-661	NM_000044	exon1	c.A173T	p.Q58L	TGCTGCAGCAGCA	.	74	4	35	0	.	0	0	0	0	0	T	66765161	A	T	66765161	3	4	9	1	0	0	0	0	1	0	0	0	836	188	7	5	175	5	AR	23	66765161	Missense_Mutation	SNP	A	TCGA-OR-A5JA-01A-11D-A29I-10	3185863	66765161	88505399	678	2217										
YIPF6	286451	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	67741213	67741213	+	Splice_Site	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	tacgctgtttccttttctcaGaatgctgcaaagagactctg	8	10	2	2	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	YIPF6-130	NM_001195214	exon4	c.180-1G>T	.	TTCTCAGAATGCT	.	153	82	84	0	.	0	0	0	0	0	T	67741213	G	T	67741213	5	4	9	1	0	0	0	0	0	0	1	0	17520	956	33	3	326	3	YIPF6	23	67741213	Splice_Site	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	976052	67741213	87529347	679	2218										
YIPF6	286451	broad.mit.edu	37	chrX	67751770	67751770	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	agcctccaaaccgcagagccCtagctgtttatcctgttttc	7	14	0	1	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	YIPF6-130	NM_173834	exon7	c.C640G	p.L214V	AGAGCCCTAGCTG	.	91	11	75	2	.	21	8	13	0	0	G	67751770	C	G	67751770	3	3	9	1	0	0	0	0	1	0	0	0	17520	680	24	3	666	3	YIPF6	23	67751770	Missense_Mutation	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	10557	67751770	87518790	680	2219										
STARD8	9754	ucsc.edu;bcgsc.ca	37	chrX	67940921	67940921	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	cgggacctgcctgagcccatCttcaccagcaagctcaccac	8	18	3	1	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	STARD8-196	NM_001142503	exon9	c.C2205A	p.I735I	GCCCATCTTCACC	.	355	87	227	3	.	1	0	1	0	0	A	67940921	C	A	67940921	2	1	9	1	0	0	0	0	0	0	0	1	15300	903	32	3		3	STARD8	23	67940921	Silent	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	189151	67940921	87329639	681	2220										
MED12	9968	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	70352313	70352313	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	gggacatgtgttaaaggctgCtggggaagaattggagaagg	18	3	0	2	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	MED12-272	NM_005120	exon31	c.C4340A	p.A1447D	AGGCTGCTGGGGA	.	301	29	219	0	.	26	24	2	0	0	A	70352313	C	A	70352313	3	1	9	1	0	0	0	0	1	0	0	0	9456	797	28	3	4462	3	MED12	23	70352313	Missense_Mutation	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	2411392	70352313	84918247	682	2221										
TAF1	6872	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	70596893	70596893	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	cttcagtagttcctctgactCagaatctgagatgggacctc	9	11	4	3	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	TAF1-900	NM_004606	exon5	c.C626A	p.S209X	CTGACTCAGAATC	.	211	43	139	0	.	0	0	0	0	0	A	70596893	C	A	70596893	4	1	9	1	0	0	0	0	0	1	0	0	15550	838	29	3	644	3	TAF1	23	70596893	Nonsense_Mutation	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	244580	70596893	84673667	683	2222										
TAF1	6872	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chrX	70598293	70598293	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	tgaacctgtgataaaatctaGaatgatagaggtgagcaaca	10	5	1	6	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	TAF1-900	NM_004606	exon7	c.G1202T	p.R401I	AATCTAGAATGAT	.	202	12	169	0	.	0	0	0	0	0	T	70598293	G	T	70598293	3	4	9	1	0	0	0	0	1	0	0	0	15550	942	33	3	1228	3	TAF1	23	70598293	Missense_Mutation	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	1400	70598293	84672267	684	2223										
CDX4	1046	hgsc.bcm.edu;broad.mit.edu	37	chrX	72667507	72667507	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	gcgggtcgcttgtcccgacgGacgcaggcgccgccaaggcc	16	16	0	0	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	CDX4-130	NM_005193	exon1	c.G418T	p.D140Y	CCGACGGACGCAG	.	78	12	25	0	.	0	0	0	0	0	T	72667507	G	T	72667507	3	4	9	1	0	0	0	0	1	0	0	0	3190	1174	41	3	420	3	CDX4	23	72667507	Missense_Mutation	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	2069214	72667507	82603053	685	2224										
ATRX	546	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	76918898	76918898	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	tctgtttctgcctttgacttCtttatgctctttaggctttg	7	9	4	1	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	ATRX-248	NM_000489	exon12	c.G4093T	p.E1365X	TGACTTCTTTATG	.	128	26	108	1	.	1	1	0	0	0	A	76918898	C	A	76918898	4	1	9	1	0	0	0	0	0	1	0	0	1209	922	32	3	3481	3	ATRX	23	76918898	Nonsense_Mutation	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	4251391	76918898	78351662	686	2225										
SATL1	340562	bcgsc.ca	37	chrX	84362768	84362768	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	tatttggcttgtgcctgattGgctggtgcctacttgtctca	11	9	1	1	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	SATL1-175	NM_001012980	exon1	c.C1207A	p.Q403K	CTGATTGGCTGGT	.	547	47	398	6	.	0	0	0	0	0	T	84362768	G	T	84362768	3	4	9	1	0	0	0	0	1	0	0	0	13890	1357	47	3	711	3	SATL1	23	84362768	Missense_Mutation	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	7443870	84362768	70907792	687	2226										
SYTL4	94121	bcgsc.ca	37	chrX	99941088	99941088	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	agtgtttctgccaaaacgacCatgatgccaaactgagaact	8	10	1	2	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	SYTL4-132	NM_001129896	exon14	c.G1348T	p.G450C	AACGACCATGATG	.	157	42	139	4	.	0	0	0	0	0	A	99941088	C	A	99941088	3	1	9	1	0	0	0	0	1	0	0	0	15522	594	21	3	687	3	SYTL4	23	99941088	Missense_Mutation	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	15578320	99941088	55329472	688	2227										
NOX1	27035	ucsc.edu;bcgsc.ca	37	chrX	100105369	100105369	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	caaaactttggatgggtgcaTaacaacctgtgaatgaagca	10	7	0	2	rs35468984	byfrequency	TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	NOX1-131	NM_013955	exon9	c.A904G	p.M302V	GGTGCATAACAAC	.	320	38	245	2	T|0.691;0|0.003	0	0	0	0	0	C	100105369	T	C	100105369	3	2	9	1	0	0	0	0	1	0	0	0	10585	1406	49	4	810	4	NOX1	23	100105369	Missense_Mutation	SNP	T	TCGA-OR-A5JA-01A-11D-A29I-10	164281	100105369	55165191	689	2228										
XKRX	402415	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	100169962	100169962	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	gatggtgatgcagaggacttCtagtggcccaaggcgaatct	14	8	2	2	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	XKRX-130	NM_212559	exon3	c.G715T	p.E239X	GGACTTCTAGTGG	.	358	64	296	2	.	0	0	0	0	0	A	100169962	C	A	100169962	4	1	9	1	0	0	0	0	0	1	0	0	17477	922	32	3	638	3	XKRX	23	100169962	Nonsense_Mutation	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	64593	100169962	55100598	690	2229										
DRP2	1821	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	100500030	100500030	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	tgtccaggttccctgggaaaGagcaatttcacccaataaag	9	10	1	1	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	DRP2-132	NM_001939	exon10	c.G1079T	p.R360I	GGGAAAGAGCAAT	.	314	41	218	0	.	0	0	0	0	0	T	100500030	G	T	100500030	3	4	9	1	0	0	0	0	1	0	0	0	4775	942	33	3	1109	3	DRP2	23	100500030	Missense_Mutation	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	330068	100500030	54770530	691	2230										
VSIG1	340547	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	107320376	107320376	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	accatcttccattcatgagaCtggccctgataccatccaag	6	14	2	2	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	VSIG1-132	NM_001170553	exon8	c.C1037A	p.T346N	ATGAGACTGGCCC	.	296	62	157	0	.	0	0	0	0	0	A	107320376	C	A	107320376	3	1	9	1	0	0	0	0	1	0	0	0	17260	565	20	3	1067	3	VSIG1	23	107320376	Missense_Mutation	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	6820346	107320376	47950184	692	2231										
COL4A5	1287	broad.mit.edu;bcgsc.ca	37	chrX	107829959	107829959	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	ctggaatacagggtccacctGgccttcctggacctccaggt	11	14	0	0	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	COL4A5-133	NM_000495	exon19	c.G1147T	p.G383C	CCACCTGGCCTTC	.	433	15	398	1	.	1	1	0	0	0	T	107829959	G	T	107829959	3	4	9	1	0	0	0	0	1	0	0	0	3700	1348	47	3	1221	3	COL4A5	23	107829959	Missense_Mutation	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	509583	107829959	47440601	693	2232										
ALG13	79868	ucsc.edu;bcgsc.ca	37	chrX	110980045	110980045	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	tcaagctattagtaccacttCagtttcctcacagaatgcta	5	11	3	1	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	ALG13-130	NM_001099922	exon23	c.C2633A	p.S878X	CCACTTCAGTTTC	.	263	64	204	3	.	5	5	0	0	0	A	110980045	C	A	110980045	4	1	9	1	0	0	0	0	0	1	0	0	515	838	29	3	2865	3	ALG13	23	110980045	Nonsense_Mutation	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	3150086	110980045	44290515	694	2233										
ZBTB33	10009	broad.mit.edu;bcgsc.ca	37	chrX	119387850	119387850	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	attctgatgatgatgatgatGatgtcattttttgctccgag	10	5	2	6	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	ZBTB33-132	NM_006777	exon2	c.G580T	p.D194Y	GATGATGATGTCA	.	146	21	88	1	.	1	1	0	0	0	T	119387850	G	T	119387850	3	4	9	1	0	0	0	0	1	0	0	0	17573	1290	45	3	582	3	ZBTB33	23	119387850	Missense_Mutation	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	8407805	119387850	35882710	695	2234										
ELF4	2000	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	129205092	129205092	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	cacagcttggacacagctttGgagtccaccagtttgaagat	10	10	0	2	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	ELF4-659	NM_001421	exon7	c.C732A	p.S244S	AGCTTTGGAGTCC	.	147	13	101	3	.	8	3	5	0	0	T	129205092	G	T	129205092	2	4	9	1	0	0	0	0	0	0	0	1	5069	1335	47	3		3	ELF4	23	129205092	Silent	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	9817242	129205092	26065468	696	2235										
IGSF1	3547	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chrX	130411109	130411109	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	taaagaataaagctcatatgCtggtggggggtggagcaatt	14	4	1	1	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	IGSF1-133	NM_001170961	exon14	c.G2427T	p.Q809H	CATATGCTGGTGG	.	136	10	84	0	.	1	1	0	0	0	A	130411109	C	A	130411109	3	1	9	1	0	0	0	0	1	0	0	0	7617	796	28	3	1626	3	IGSF1	23	130411109	Missense_Mutation	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	1206017	130411109	24859451	697	2236										
TFDP3	51270	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chrX	132352122	132352122	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	aggcataccaattaccacttGctggtcaatgttgacactgg	9	10	1	1	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	TFDP3-131	NM_016521	exon1	c.C166A	p.Q56K	CCACTTGCTGGTC	.	234	23	170	0	.	0	0	0	0	0	T	132352122	G	T	132352122	3	4	9	1	0	0	0	0	1	0	0	0	15836	1328	46	3	1055	3	TFDP3	23	132352122	Missense_Mutation	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	1941013	132352122	22918438	698	2237										
GPR112	139378	bcgsc.ca	37	chrX	135427145	135427145	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	aaaatccacaaatactggggCactccctatctccacagctg	6	14	1	0	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	GPR112-183	NM_153834	exon6	c.C1280A	p.A427E	CTGGGGCACTCCC	.	486	23	389	4	.	0	0	0	0	0	A	135427145	C	A	135427145	3	1	9	1	0	0	0	0	1	0	0	0	6649	710	25	3	1290	3	GPR112	23	135427145	Missense_Mutation	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	3075023	135427145	19843415	699	2238										
GABRQ	55879	bcgsc.ca	37	chrX	151821117	151821117	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	acgtccacctccgagcaggcCcagctggccacctcggaaag	11	17	0	0	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	GABRQ-133	NM_018558	exon9	c.C1272A	p.A424A	GCAGGCCCAGCTG	.	470	57	313	4	.	0	0	0	0	0	A	151821117	C	A	151821117	2	1	9	1	0	0	0	0	0	0	0	1	6194	610	22	3		3	GABRQ	23	151821117	Silent	SNP	C	TCGA-OR-A5JA-01A-11D-A29I-10	16393972	151821117	3449443	700	2239										
PNMA3	29944	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	152226031	152226031	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	aaaagaggcggaggctgatgGaatgcttacggggccctgct	16	8	0	2	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	PNMA3-600	NM_013364	exon2	c.G619A	p.E207K	CTGATGGAATGCT	.	102	12	64	1	.	5	5	0	0	0	A	152226031	G	A	152226031	3	1	9	1	0	0	0	0	1	0	0	0	12184	1175	41	3	621	3	PNMA3	23	152226031	Missense_Mutation	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	404914	152226031	3044529	701	2240										
ATP2B3	492	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	152827696	152827696	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	tgttggggagctggtctgggGacaggtgagtgacagccctg	19	7	1	2	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	ATP2B3-109	NM_001001344	exon18	c.G3155T	p.G1052V	TCTGGGGACAGGT	.	124	32	79	0	.	0	0	0	0	0	T	152827696	G	T	152827696	3	4	9	1	0	0	0	0	1	0	0	0	1142	1174	41	3	3225	3	ATP2B3	23	152827696	Missense_Mutation	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	601665	152827696	2442864	702	2241										
PLXNB3	5365	bcgsc.ca	37	chrX	153042778	153042778	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	agcagcctgcgggagcgcgaGccagcaagggccaaggccat	16	13	0	0	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	PLXNB3-130	NM_001163257	exon31	c.G5112T	p.E1704D	GCGCGAGCCAGCA	.	369	27	186	2	.	1	1	0	0	0	T	153042778	G	T	153042778	3	4	9	1	0	0	0	0	1	0	0	0	12154	962	34	3	5275	3	PLXNB3	23	153042778	Missense_Mutation	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	215082	153042778	2227782	703	2242										
ARHGAP4	393	bcgsc.ca	37	chrX	153184648	153184648	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.011444921316166	8	1	0.939533857572845	0.992916463116756	0.910173424523693	0.724166509645759	1	0	tcatgcaggtagtagttactGacagcagcgttgacactagc	11	9	1	2	novel		TCGA-OR-A5JA-01A-11D-A29I-10	TCGA-OR-A5JA-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a42d9ff4-e18c-401a-87f4-8485386a7f5c	ae17be6a-90e4-4486-8dac-708ca0178f25	.	ARHGAP4-227	NM_001164741	exon7	c.C891A	p.V297V	GTTACTGACAGCA	.	298	16	188	2	.	0	0	0	0	0	T	153184648	G	T	153184648	2	4	9	1	0	0	0	0	0	0	0	1	885	1277	45	3		3	ARHGAP4	23	153184648	Silent	SNP	G	TCGA-OR-A5JA-01A-11D-A29I-10	141870	153184648	2085912	704	2243										
SAMD11	148398	hgsc.bcm.edu	37	chr1	877831	877831	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	cgcaggcggagatgttcgccTggcagcaggagctcctgcgg	17	12	0	1	rs6672356		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	SAMD11-90	NM_152486	exon10	c.T1027C	p.W343R	TTCGCCTGGCAGC	.	6	6	0	0	T|0.004;C|0.996	0	0	0	0	0	C	877831	T	C	877831	3	2	10	1	0	0	0	0	1	0	0	0	13851	1580	55	4	1061	4	SAMD11	1	877831	Missense_Mutation	SNP	T	TCGA-OR-A5JB-01A-11D-A29I-10		877831	248372790	1	2244										
VPS13D	55187	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	12294377	12294377	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	acctatttgggaaaatatgtCaataacctgaacactgacca	6	9	1	2	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	VPS13D-95	NM_015378	exon2	c.C54G	p.V18V	ATATGTCAATAAC	.	172	56	122	0	.	1	1	0	0	0	G	12294377	C	G	12294377	2	3	10	1	0	0	0	0	0	0	0	1	17230	813	29	3		3	VPS13D	1	12294377	Silent	SNP	C	TCGA-OR-A5JB-01A-11D-A29I-10	11416546	12294377	236956244	2	2245										
PRAMEF4	400735	broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr1	12939472	12939472	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	ggggtgccttaagtccctcaCtctgttcatcagctcagccc	9	15	5	0	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	PRAMEF4-45	NM_001009611	exon4	c.G1330A	p.V444M	CCCTCACTCTGTT	.	1237	116	776	0	.	0	0	0	0	0	T	12939472	C	T	12939472	3	4	10	1	0	0	0	0	1	0	0	0	12469	565	20	3	110	3	PRAMEF4	1	12939472	Missense_Mutation	SNP	C	TCGA-OR-A5JB-01A-11D-A29I-10	645095	12939472	236311149	3	2246										
AGMAT	79814	hgsc.bcm.edu	37	chr1	15911349	15911349	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	gggggctggttccggggcgcGtcggaagcctggcggctctg	21	11	1	0	rs3737705	byfrequency	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	AGMAT-91	NM_024758	exon1	c.C114T	p.D38D	GGGCGCGTCGGAA	.	14	7	0	0	G|0.647;A|0.353	0	0	0	0	0	A	15911349	G	A	15911349	2	1	10	1	0	0	0	0	0	0	0	1	385	1136	40	1		1	AGMAT	1	15911349	Silent	SNP	G	TCGA-OR-A5JB-01A-11D-A29I-10	2971877	15911349	233339272	4	2247										
MYOM3	127294	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	24385424	24385424	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	gggtcagtaccttatcttccAtgatagtggccacatccggc	10	12	2	1	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	MYOM3-93	NM_152372	exon36	c.T4040A	p.M1347K	TCTTCCATGATAG	.	123	34	99	0	.	0	0	0	0	0	T	24385424	A	T	24385424	3	4	10	1	0	0	0	0	1	0	0	0	10121	217	8	5	281	5	MYOM3	1	24385424	Missense_Mutation	SNP	A	TCGA-OR-A5JB-01A-11D-A29I-10	8474075	24385424	224865197	5	2248										
NIPAL3	57185	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	24786973	24786973	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	tatgatttgctgctgcaggtGcaatattttacctggacttc	9	8	0	1	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	NIPAL3-90	NM_020448	exon10	c.G865C	p.A289P	GCAGGTGCAATAT	.	129	51	86	0	.	0	0	0	0	0	C	24786973	G	C	24786973	3	2	10	1	0	0	0	0	1	0	0	0	10455	1319	46	3	899	3	NIPAL3	1	24786973	Missense_Mutation	SNP	G	TCGA-OR-A5JB-01A-11D-A29I-10	401549	24786973	224463648	6	2249										
BAI2	576	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	32209956	32209956	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	ccactcctcagccgccgggtCgcctacgagagagggacagc	13	16	1	1	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	BAI2-526	NM_001703	exon6	c.G925A	p.D309N	CCGGGTCGCCTAC	.	86	30	32	0	.	0	0	0	0	0	T	32209956	C	T	32209956	3	4	10	1	0	0	0	0	1	0	0	0	1300	884	31	1	3944	1	BAI2	1	32209956	Missense_Mutation	SNP	C	TCGA-OR-A5JB-01A-11D-A29I-10	7422983	32209956	217040665	7	2250										
EPHA10	284656	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	38230726	38230726	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	gcgcagcgggtgtggaccggCgcaggtctccatggtccgca	17	13	1	0	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	EPHA10-1246	NM_001099439	exon1	c.G13C	p.A5P	GACCGGCGCAGGT	.	71	28	28	0	.	0	0	0	0	0	G	38230726	C	G	38230726	3	3	10	1	0	0	0	0	1	0	0	0	5179	768	27	2	3119	2	EPHA10	1	38230726	Missense_Mutation	SNP	C	TCGA-OR-A5JB-01A-11D-A29I-10	6020770	38230726	211019895	8	2251										
TTC4	7268	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	55188440	55188440	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	atgccaaagagaagaagcttCtggaaatgagggctaaagca	12	6	1	3	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	TTC4-90	NM_004623	exon5	c.C562G	p.L188V	AAGCTTCTGGAAA	.	244	51	107	0	.	16	9	7	0	0	G	55188440	C	G	55188440	3	3	10	1	0	0	0	0	1	0	0	0	16748	912	32	3	580	3	TTC4	1	55188440	Missense_Mutation	SNP	C	TCGA-OR-A5JB-01A-11D-A29I-10	16957714	55188440	194062181	9	2252										
SGIP1	84251	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	67098763	67098763	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	tttgttacagaggttcaccaGatagagatggaattgtaagt	11	4	1	3	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	SGIP1-93	NM_032291	exon3	c.G85A	p.D29N	TCACCAGATAGAG	.	87	39	45	0	.	0	0	0	0	0	A	67098763	G	A	67098763	3	1	10	1	0	0	0	0	1	0	0	0	14241	942	33	3	95	3	SGIP1	1	67098763	Missense_Mutation	SNP	G	TCGA-OR-A5JB-01A-11D-A29I-10	11910323	67098763	182151858	10	2253										
ZRANB2	9406	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	71538205	71538205	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	ttctatatattcaacattttCtctttcattaaaaccaccac	0	11	4	0	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	ZRANB2-92	NM_005455	exon5	c.G328A	p.E110K	CATTTTCTCTTTC	.	161	32	165	0	.	14	11	3	0	0	T	71538205	C	T	71538205	3	4	10	1	0	0	0	0	1	0	0	0	18260	922	32	3	726	3	ZRANB2	1	71538205	Missense_Mutation	SNP	C	TCGA-OR-A5JB-01A-11D-A29I-10	4439442	71538205	177712416	11	2254										
C1orf173	127254	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	75038013	75038013	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	gcctccacaggtgcttcgttCtcagcatcagatcccatttc	7	15	2	1	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	C1orf173-94	NM_001002912	exon14	c.G3381C	p.E1127D	TTCGTTCTCAGCA	.	18	6	24	0	.	0	0	0	0	0	G	75038013	C	G	75038013	3	3	10	1	0	0	0	0	1	0	0	0	2020	912	32	3	1215	3	C1orf173	1	75038013	Missense_Mutation	SNP	C	TCGA-OR-A5JB-01A-11D-A29I-10	3499808	75038013	174212608	12	2255										
SLC44A5	204962	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	75805310	75805310	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	atctgggtcatatgtccttgGatcacctgcatttaaaacaa	7	9	3	0	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	SLC44A5-95	NM_001130058	exon4	c.C58A	p.P20T	TCCTTGGATCACC	.	57	37	30	0	.	0	0	0	0	0	T	75805310	G	T	75805310	3	4	10	1	0	0	0	0	1	0	0	0	14674	1174	41	3	2296	3	SLC44A5	1	75805310	Missense_Mutation	SNP	G	TCGA-OR-A5JB-01A-11D-A29I-10	767297	75805310	173445311	13	2256										
ELTD1	64123	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	79385979	79385980	+	Missense_Mutation	DNP	CC	CC	AA													0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	ctttgaatttcactgaagaaCcagaaggtaaaaatgcatat					novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	CC	CC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	ELTD1-24	NM_022159	exon10	c.G1349T	p.W450F	AAGAACCAGAAGG	.	45	6	45	0	.	0	0	0	0	0	AA	79385980	CC	AA	79385979	3	1	10	1	0	0	0	0	1	0	0	0	5097	508	18	3	746	3	ELTD1	1	79385979	Missense_Mutation	DNP	CC	TCGA-OR-A5JB-01A-11D-A29I-10	3580669	79385979	169864642	14	2257										
SAMD13	148418	hgsc.bcm.edu	37	chr1	84764249	84764249	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	cccggcgcggccatgcggggAggtaagtgatctgcctgtgc	17	12	1	1	rs1156085	byfrequency	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	SAMD13-226	NM_001010971	exon1	c.A9G	p.G3G	GCGGGGAGGTAAG	.	49	14	7	0	A|0.979;G|0.021	0	0	0	0	0	G	84764249	A	G	84764249	2	3	10	1	0	0	0	0	0	0	0	1	13853	318	11	4		4	SAMD13	1	84764249	Silent	SNP	A	TCGA-OR-A5JB-01A-11D-A29I-10	5378270	84764249	164486372	15	2258										
WDR47	22911	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr1	109544988	109544988	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	ttgatagcgtaatctttgccTataatattcttgaaattgtt	6	5	2	2	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	WDR47-91	NM_001142550	exon7	c.A1315G	p.R439G	TTTGCCTATAATA	.	28	13	36	0	.	0	0	0	0	0	C	109544988	T	C	109544988	3	2	10	1	0	0	0	0	1	0	0	0	17338	1521	53	4	1504	4	WDR47	1	109544988	Missense_Mutation	SNP	T	TCGA-OR-A5JB-01A-11D-A29I-10	24780739	109544988	139705633	16	2259										
CEPT1	10390	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	111725483	111725483	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	attacattagctgcaatgatCtacaagaaatctgcagttca	6	8	3	2	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	CEPT1-90	NM_001007794	exon7	c.C909A	p.I303I	AATGATCTACAAG	.	212	104	152	0	.	15	4	11	0	0	A	111725483	C	A	111725483	2	1	10	1	0	0	0	0	0	0	0	1	3270	903	32	3		3	CEPT1	1	111725483	Silent	SNP	C	TCGA-OR-A5JB-01A-11D-A29I-10	2180495	111725483	137525138	17	2260										
HSD3B1	3283	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	120056635	120056635	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	cacagcaaaaagcttgctgaGaaggctgtactggcggctaa	12	9	0	1	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	HSD3B1-92	NM_000862	exon4	c.G489A	p.E163E	TGCTGAGAAGGCT	.	76	32	87	0	.	0	0	0	0	0	A	120056635	G	A	120056635	2	1	10	1	0	0	0	0	0	0	0	1	7411	933	33	3		3	HSD3B1	1	120056635	Silent	SNP	G	TCGA-OR-A5JB-01A-11D-A29I-10	8331152	120056635	129193986	18	2261										
NBPF7	343505	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	120385066	120385066	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	gccccctcacctgagctcctCagcttgcttgagctgctctg	9	17	3	2	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	NBPF7-24	NM_001047980	exon2	c.G328C	p.E110Q	GCTCCTCAGCTTG	.	69	37	96	0	.	1	1	0	0	0	G	120385066	C	G	120385066	3	3	10	1	0	0	0	0	1	0	0	0	10227	835	29	3	964	3	NBPF7	1	120385066	Missense_Mutation	SNP	C	TCGA-OR-A5JB-01A-11D-A29I-10	328431	120385066	128865555	19	2262										
ADAM30	11085	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	120438173	120438173	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	taactctggatatccaacgcGtattttgttaaaatctgtcc	6	9	2	0	rs200088734	alternate_allele	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	ADAM30-228	NM_021794	exon1	c.C787T	p.R263C	CAACGCGTATTTT	.	30	12	63	0	.	0	0	0	0	0	A	120438173	G	A	120438173	3	1	10	1	0	0	0	0	1	0	0	0	248	1145	40	1	1589	1	ADAM30	1	120438173	Missense_Mutation	SNP	G	TCGA-OR-A5JB-01A-11D-A29I-10	53107	120438173	128812448	20	2263										
C1orf54	79630	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	150248174	150248174	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	ctttagtgcagatttcaccaTtgattactccatatttgagt	6	8	1	3	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	C1orf54-90	NM_024579	exon3	c.T155C	p.I52T	TCACCATTGATTA	.	199	85	124	0	.	54	53	1	0	0	C	150248174	T	C	150248174	3	2	10	1	0	0	0	0	1	0	0	0	2052	1493	52	4	165	4	C1orf54	1	150248174	Missense_Mutation	SNP	T	TCGA-OR-A5JB-01A-11D-A29I-10	29810001	150248174	99002447	21	2264										
HRNR	388697	broad.mit.edu;bcgsc.ca	37	chr1	152188371	152188371	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	acctgagctagatccgtgttGttcacccctagatgactgtc	9	12	1	4	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	HRNR-93	NM_001009931	exon3	c.C5734A	p.Q1912K	CGTGTTGTTCACC	.	3986	242	1519	1	.	0	0	0	0	0	T	152188371	G	T	152188371	3	4	10	1	0	0	0	0	1	0	0	0	7380	1386	48	3	2822	3	HRNR	1	152188371	Missense_Mutation	SNP	G	TCGA-OR-A5JB-01A-11D-A29I-10	1940197	152188371	97062250	22	2265										
FLG	2312	hgsc.bcm.edu;bcgsc.ca	37	chr1	152276933	152276933	+	Frame_Shift_Del	DEL	G	G	-													0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	tctggatcctgactgcccacGggaggcatcagaccttccct					novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	FLG-106	NM_002016	exon3	c.10429delC	p.R3477fs	GCCCACGGGAGGC	.	504	212	145	2	.	0	0	0	0	0	-	152276933	G	-	152276933	7	5	10	1	0	1	0	1	0	0	0	0	5941	1116	39	0	1760	0	FLG	1	152276933	Frame_Shift_Del	DEL	G	TCGA-OR-A5JB-01A-11D-A29I-10	88562	152276933	96973688	23	2266										
FLG	2312	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	152286710	152286710	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	agtcattcttcctgtattttCataatcatatactccttctt	2	10	5	0	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	FLG-106	NM_002016	exon3	c.G652A	p.E218K	TATTTTCATAATC	.	123	25	97	0	.	0	0	0	0	0	T	152286710	C	T	152286710	3	4	10	1	0	0	0	0	1	0	0	0	5941	835	29	3	11537	3	FLG	1	152286710	Missense_Mutation	SNP	C	TCGA-OR-A5JB-01A-11D-A29I-10	9777	152286710	96963911	24	2267										
LCE4A	199834	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	152681610	152681610	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	tcccaagtgtcctatccccaAgtatcccccaaaatgtccct	4	17	0	0	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	LCE4A-90	NM_178356	exon1	c.A59G	p.K20R	TCCCCAAGTATCC	.	356	66	142	0	.	0	0	0	0	0	G	152681610	A	G	152681610	3	3	10	1	0	0	0	0	1	0	0	0	8696	72	3	4	61	4	LCE4A	1	152681610	Missense_Mutation	SNP	A	TCGA-OR-A5JB-01A-11D-A29I-10	394900	152681610	96569011	25	2268										
SPRR4	163778	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	152944424	152944424	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	gcccaccccagagggcccagCagcagcaagtgaagcagcct	12	16	0	2	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	SPRR4-68	NM_173080	exon2	c.C58A	p.Q20K	GCCCAGCAGCAGC	.	423	73	164	0	.	0	0	0	0	0	A	152944424	C	A	152944424	3	1	10	1	0	0	0	0	1	0	0	0	15141	711	25	3	60	3	SPRR4	1	152944424	Missense_Mutation	SNP	C	TCGA-OR-A5JB-01A-11D-A29I-10	262814	152944424	96306197	26	2269										
ADAM15	8751	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	155028275	155028275	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	gtccatagtagaggcgggatGtggtaacagagaccaagact	14	7	0	3	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	ADAM15-651	NM_001261464	exon7	c.G652A	p.V218M	CGGGATGTGGTAA	.	473	183	195	0	.	0	0	0	0	0	A	155028275	G	A	155028275	3	1	10	1	0	0	0	0	1	0	0	0	237	1377	48	3	648	3	ADAM15	1	155028275	Missense_Mutation	SNP	G	TCGA-OR-A5JB-01A-11D-A29I-10	2083851	155028275	94222346	27	2270										
BCAN	63827	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	156628418	156628418	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	atgaggtggacactgtgcttCgctaccggtgccgggaagga	16	9	0	1	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	BCAN-516	NM_021948	exon13	c.C2521T	p.R841C	GTGCTTCGCTACC	.	594	118	169	1	.	0	0	0	0	0	T	156628418	C	T	156628418	3	4	10	1	0	0	0	0	1	0	0	0	1346	884	31	1	2641	1	BCAN	1	156628418	Missense_Mutation	SNP	C	TCGA-OR-A5JB-01A-11D-A29I-10	1600143	156628418	92622203	28	2271										
SPTA1	6708	hgsc.bcm.edu;bcgsc.ca	37	chr1	158627366	158627367	+	Frame_Shift_Ins	INS	-	-	T													0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	gcaggtcagccaggtactgcINStggaactggacattggcttc					novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	SPTA1-142	NM_003126	exon19	c.2706_2707insA	p.Q902fs	GTACTGCTGGAAC	.	208	155	112	0	.	0	0	0	0	0	T	158627367	-	T	158627366	7	5	10	1	0	1	1	0	0	0	0	0	15153	796	28	0	4689	0	SPTA1	1	158627366	Frame_Shift_Ins	INS	-	TCGA-OR-A5JB-01A-11D-A29I-10	1998948	158627366	90623255	29	2272										
ATP1A4	480	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	160141399	160141399	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	ctgcttcttgaatctgcctaGcagcttctccaagggattcc	8	13	3	1	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	ATP1A4-94	NM_144699	exon12	c.G1706T	p.S569I	TGCCTAGCAGCTT	.	30	25	36	0	.	0	0	0	0	0	T	160141399	G	T	160141399	3	4	10	1	0	0	0	0	1	0	0	0	1132	971	34	3	1752	3	ATP1A4	1	160141399	Missense_Mutation	SNP	G	TCGA-OR-A5JB-01A-11D-A29I-10	1514033	160141399	89109222	30	2273										
ASTN1	460	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	176852120	176852120	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	atgatgtcgtccacaaagctCagcactgtttctgcccagag	9	12	2	2	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	ASTN1-319	NM_207108	exon20	c.G3237A	p.L1079L	AAAGCTCAGCACT	.	218	82	169	0	.	0	0	0	0	0	T	176852120	C	T	176852120	2	4	10	1	0	0	0	0	0	0	0	1	1065	813	29	3		3	ASTN1	1	176852120	Silent	SNP	C	TCGA-OR-A5JB-01A-11D-A29I-10	16710721	176852120	72398501	31	2274										
TOR3A	64222	hgsc.bcm.edu	37	chr1	179051300	179051300	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	ggcgccagctttggctctttTtcctgctgctgctcccgggc	12	15	1	0	rs2296377	byfrequency	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	TOR3A-90	NM_022371	exon1	c.T37C	p.F13L	CTCTTTTTCCTGC	.	6	6	0	0	T|0.229;C|0.771	0	0	0	0	0	C	179051300	T	C	179051300	3	2	10	1	0	0	0	0	1	0	0	0	16414	1841	64	4	39	4	TOR3A	1	179051300	Missense_Mutation	SNP	T	TCGA-OR-A5JB-01A-11D-A29I-10	2199180	179051300	70199321	32	2275										
ACBD6	84320	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	180471345	180471345	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	ccggagtcgtcccctgagctCagctctccaccgctgtcgcc	10	19	2	1	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	ACBD6-91	NM_032360	exon1	c.G57C	p.L19L	TGAGCTCAGCTCT	.	313	122	240	2	.	39	19	20	0	0	G	180471345	C	G	180471345	2	3	10	1	0	0	0	0	0	0	0	1	126	813	29	3		3	ACBD6	1	180471345	Silent	SNP	C	TCGA-OR-A5JB-01A-11D-A29I-10	1420045	180471345	68779276	33	2276										
RNF2	6045	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	185069018	185069018	+	Nonsense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	acttcgaagcaaaggtgaatCaaaccagatgaaccttgata	8	8	1	4	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	RNF2-658	NM_007212	exon6	c.C833G	p.S278X	GTGAATCAAACCA	.	334	121	254	2	.	15	13	2	0	0	G	185069018	C	G	185069018	4	3	10	1	0	0	0	0	0	1	0	0	13507	838	29	3	851	3	RNF2	1	185069018	Nonsense_Mutation	SNP	C	TCGA-OR-A5JB-01A-11D-A29I-10	4597673	185069018	64181603	34	2277										
RNPEP	6051	hgsc.bcm.edu	37	chr1	201951890	201951890	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	gcctcggcctccaacttccgGgcctttgagctgctgcactt	10	16	0	1	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	RNPEP-91	NM_020216	exon1	c.G96T	p.R32R	CTTCCGGGCCTTT	.	50	4	10	0	.	1	1	0	0	0	T	201951890	G	T	201951890	2	4	10	1	0	0	0	0	0	0	0	1	13544	1219	43	3		3	RNPEP	1	201951890	Silent	SNP	G	TCGA-OR-A5JB-01A-11D-A29I-10	16882872	201951890	47298731	35	2278										
GPATCH2	55105	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	217793701	217793701	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	gttttctccctctccttttcCttgcctggcgtttcagaggg	9	13	3	1	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	GPATCH2-91	NM_018040	exon2	c.G197T	p.R66M	CTTTTCCTTGCCT	.	85	60	58	0	.	2	0	2	0	0	A	217793701	C	A	217793701	3	1	10	1	0	0	0	0	1	0	0	0	6611	681	24	3	1425	3	GPATCH2	1	217793701	Missense_Mutation	SNP	C	TCGA-OR-A5JB-01A-11D-A29I-10	15841811	217793701	31456920	36	2279										
MARK1	4139	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	220835222	220835222	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	ttctaagccgcgttctttgcGgttcacatggagtatgaaga	11	8	3	2	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	MARK1-802	NM_018650	exon18	c.G2102T	p.R701L	CTTTGCGGTTCAC	.	191	147	163	1	.	9	0	9	0	0	T	220835222	G	T	220835222	3	4	10	1	0	0	0	0	1	0	0	0	9340	1116	39	2	2172	2	MARK1	1	220835222	Missense_Mutation	SNP	G	TCGA-OR-A5JB-01A-11D-A29I-10	3041521	220835222	28415399	37	2280										
OBSCN	84033	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	228471220	228471220	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	ccagaaaaagcaaactgcttCacagaggagctgaccaatct	8	11	2	3	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	OBSCN-403	NM_001271223	exon38	c.C10041T	p.F3347F	CTGCTTCACAGAG	.	318	102	181	0	.	0	0	0	0	0	T	228471220	C	T	228471220	2	4	10	1	0	0	0	0	0	0	0	1	10841	825	29	3		3	OBSCN	1	228471220	Silent	SNP	C	TCGA-OR-A5JB-01A-11D-A29I-10	7635998	228471220	20779401	38	2281										
OBSCN	84033	hgsc.bcm.edu	37	chr1	228504670	228504670	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	gcgacgccgtggcctctgcgCggctcaccgtgctgggtggg	18	14	2	0	rs11810627	byfrequency	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	OBSCN-403	NM_001271223	exon62	c.C16417T	p.R5473W	TCTGCGCGGCTCA	.	9	9	0	0	C|0.643;T|0.357	0	0	0	0	0	T	228504670	C	T	228504670	3	4	10	1	0	0	0	0	1	0	0	0	10841	759	27	1	13744	1	OBSCN	1	228504670	Missense_Mutation	SNP	C	TCGA-OR-A5JB-01A-11D-A29I-10	33450	228504670	20745951	39	2282										
KIF26B	55083	bcgsc.ca	37	chr1	245582995	245582995	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	cagcctcgcagggctcctgcGtggccagcgagacttccaca	12	16	0	1	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	KIF26B-25	NM_018012	exon4	c.G1114C	p.V372L	TCCTGCGTGGCCA	.	361	272	225	4	.	0	0	0	0	0	C	245582995	G	C	245582995	3	2	10	1	0	0	0	0	1	0	0	0	8316	1145	40	2	1128	2	KIF26B	1	245582995	Missense_Mutation	SNP	G	TCGA-OR-A5JB-01A-11D-A29I-10	17078325	245582995	3667626	40	2283										
OR2W5	441932	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	247654468	247654468	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	agttacctacaggcattcatCctggtgggctcttctgatcg	10	11	3	1	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	OR2W5-115	NM_001004698	exon1	c.C39T	p.I13I	ATTCATCCTGGTG	.	143	106	88	0	.	0	0	0	0	0	T	247654468	C	T	247654468	2	4	10	1	0	0	0	0	0	0	0	1	11063	845	30	3		3	OR2W5	1	247654468	Silent	SNP	C	TCGA-OR-A5JB-01A-11D-A29I-10	2071473	247654468	1596153	41	2284										
TPO	7173	hgsc.bcm.edu	37	chr2	1481231	1481231	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	ggccggagacggccgcgccaGcgaggtcccctccctgacgg	16	17	0	2	rs2175977	byfrequency	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	TPO-332	NM_175719	exon8	c.G1193C	p.S398T	GCGCCAGCGAGGT	.	8	8	0	0	G|0.301;C|0.699	0	0	0	0	0	C	1481231	G	C	1481231	3	2	10	1	0	0	0	0	1	0	0	0	16448	971	34	3	1219	3	TPO	2	1481231	Missense_Mutation	SNP	G	TCGA-OR-A5JB-01A-11D-A29I-10		1481231	241718142	42	2285										
PXDN	7837	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	1652055	1652055	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	agtcgtggtagggtgggatcCcgtggtcccggccccgctgg	18	12	0	0	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	PXDN-166	NM_012293	exon17	c.G3497T	p.G1166V	GGGATCCCGTGGT	.	192	91	104	0	.	1	0	1	0	0	A	1652055	C	A	1652055	3	1	10	1	0	0	0	0	1	0	0	0	12882	623	22	3	970	3	PXDN	2	1652055	Missense_Mutation	SNP	C	TCGA-OR-A5JB-01A-11D-A29I-10	170824	1652055	241547318	43	2286										
APOB	338	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	21231248	21231248	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	ccgttctcaggtacttgctgGagaacttcactgactccttc	8	13	2	2	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	APOB-175	NM_000384	exon26	c.C8492A	p.S2831Y	TTGCTGGAGAACT	.	66	29	46	0	.	0	0	0	0	0	T	21231248	G	T	21231248	3	4	10	1	0	0	0	0	1	0	0	0	785	1174	41	3	5215	3	APOB	2	21231248	Missense_Mutation	SNP	G	TCGA-OR-A5JB-01A-11D-A29I-10	19579193	21231248	221968125	44	2287										
FAM98A	25940	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	33811716	33811716	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	cggacttcatattcattggcTatggcttggttaattgcttc	9	8	2	0	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	FAM98A-91	NM_015475	exon6	c.A633T	p.I211I	ATTGGCTATGGCT	.	44	17	40	0	.	5	4	1	0	0	A	33811716	T	A	33811716	2	1	10	1	0	0	0	0	0	0	0	1	5675	1512	53	5		5	FAM98A	2	33811716	Silent	SNP	T	TCGA-OR-A5JB-01A-11D-A29I-10	12580468	33811716	209387657	45	2288										
MSH2	4436	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	47641427	47641427	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	ggttgcagtttcatcactgtCtgcggtaatcaagtttttag	10	7	4	0	rs139891783		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	MSH2-2445	NM_000251	exon5	c.C812T	p.S271F	CACTGTCTGCGGT	.	45	22	83	0	.	12	4	8	0	0	T	47641427	C	T	47641427	3	4	10	1	0	0	0	0	1	0	0	0	9898	913	32	3	830	3	MSH2	2	47641427	Missense_Mutation	SNP	C	TCGA-OR-A5JB-01A-11D-A29I-10	13829711	47641427	195557946	46	2289										
SPTBN1	6711	broad.mit.edu;mdanderson.org	37	chr2	54858733	54858733	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	gacacgaagcaagccgaagcCtttcttaacaaccaggtaag	9	11	1	0	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	SPTBN1-140	NM_003128	exon16	c.C3549G	p.A1183A	CGAAGCCTTTCTT	.	61	21	49	0	.	0	0	0	0	0	G	54858733	C	G	54858733	2	3	10	1	0	0	0	0	0	0	0	1	15156	668	24	3		3	SPTBN1	2	54858733	Silent	SNP	C	TCGA-OR-A5JB-01A-11D-A29I-10	7217306	54858733	188340640	47	2290										
UGP2	7360	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	64111157	64111157	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	tgaactcttttaacacggatGaagataccaaaaaaatacta	5	7	1	3	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	UGP2-90	NM_006759	exon5	c.G505A	p.E169K	ACGGATGAAGATA	.	47	18	78	0	.	34	19	15	0	0	A	64111157	G	A	64111157	3	1	10	1	0	0	0	0	1	0	0	0	16981	1291	45	3	523	3	UGP2	2	64111157	Missense_Mutation	SNP	G	TCGA-OR-A5JB-01A-11D-A29I-10	9252424	64111157	179088216	48	2291										
CLEC4F	165530	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	71039579	71039579	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	cccatgctcgcagctctgacCtgctcctccttggaggccac	9	18	1	1	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	CLEC4F-95	NM_173535	exon5	c.G1539T	p.Q513H	TCTGACCTGCTCC	.	162	55	135	0	.	0	0	0	0	0	A	71039579	C	A	71039579	3	1	10	1	0	0	0	0	1	0	0	0	3522	695	24	3	242	3	CLEC4F	2	71039579	Missense_Mutation	SNP	C	TCGA-OR-A5JB-01A-11D-A29I-10	6928422	71039579	172159794	49	2292										
TBC1D8	11138	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	101656658	101656658	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	acctctctgagtggcaggatGatcttacagcagccatcttc	9	12	3	2	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	TBC1D8-25	NM_001102426	exon6	c.C1017T	p.I339I	CAGGATGATCTTA	.	220	68	132	0	.	2	0	2	0	0	A	101656658	G	A	101656658	2	1	10	1	0	0	0	0	0	0	0	1	15662	1280	45	3		3	TBC1D8	2	101656658	Silent	SNP	G	TCGA-OR-A5JB-01A-11D-A29I-10	30617079	101656658	141542715	50	2293										
IL18R1	8809	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	102998142	102998142	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	accatgttgcagtggaattaGgtatatttcaatatacatat	7	5	1	0	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	IL18R1-93	NM_003855	exon5	c.G688A	p.G230R	GAATTAGGTATAT	.	77	28	94	0	.	0	0	0	0	0	A	102998142	G	A	102998142	3	1	10	1	0	0	0	0	1	0	0	0	7668	1014	35	3	706	3	IL18R1	2	102998142	Missense_Mutation	SNP	G	TCGA-OR-A5JB-01A-11D-A29I-10	1341484	102998142	140201231	51	2294										
SULT1C3	442038	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	108872131	108872131	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	tcagaacttagaggaattttAtgagaaattcatgtccggaa	9	5	2	3	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	SULT1C3-91	NM_001008743	exon4	c.A503T	p.Y168F	AATTTTATGAGAA	.	99	18	79	0	.	0	0	0	0	0	T	108872131	A	T	108872131	3	4	10	1	0	0	0	0	1	0	0	0	15415	449	16	5	517	5	SULT1C3	2	108872131	Missense_Mutation	SNP	A	TCGA-OR-A5JB-01A-11D-A29I-10	5873989	108872131	134327242	52	2295										
IL1RN	3557	ucsc.edu;bcgsc.ca	37	chr2	113887216	113887216	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	caactagttgctggatacttGcaaggaccaaatgtcaattt	8	8	1	0	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	IL1RN-92	NM_173841	exon4	c.G189T	p.L63F	ATACTTGCAAGGA	.	402	134	268	4	.	1	1	0	0	0	T	113887216	G	T	113887216	3	4	10	1	0	0	0	0	1	0	0	0	7686	1310	46	3	267	3	IL1RN	2	113887216	Missense_Mutation	SNP	G	TCGA-OR-A5JB-01A-11D-A29I-10	5015085	113887216	129312157	53	2296										
MARCO	8685	hgsc.bcm.edu;bcgsc.ca	37	chr2	119731955	119731955	+	Frame_Shift_Del	DEL	C	C	-													0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	ggcatgcctggtgcccctggCccgccgggaccacctgctga					novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	MARCO-95	NM_006770	exon5	c.507delC	p.G169fs	CCCTGGCCCGCCG	.	71	27	76	1	.	0	0	0	0	0	-	119731955	C	-	119731955	7	5	10	1	0	1	0	1	0	0	0	0	9339	726	26	0	525	0	MARCO	2	119731955	Frame_Shift_Del	DEL	C	TCGA-OR-A5JB-01A-11D-A29I-10	5844739	119731955	123467418	54	2297										
C1QL2	165257	hgsc.bcm.edu;broad.mit.edu	37	chr2	119915573	119915573	+	Frame_Shift_Del	DEL	C	C	-													0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	gggcccggctctccagggggCccccgcggccctggcttgcc					novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	C1QL2-91	NM_182528	exon1	c.273delG	p.G91fs	AGGGGGCCCCCGC	.	22	11	6	0	.	0	0	0	0	0	-	119915573	C	-	119915573	7	5	10	1	0	1	0	1	0	0	0	0	1965	726	26	0	598	0	C1QL2	2	119915573	Frame_Shift_Del	DEL	C	TCGA-OR-A5JB-01A-11D-A29I-10	183618	119915573	123283800	55	2298										
CNTNAP5	129684	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	125262066	125262066	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	tcgggaaccctgctgctgagCctggagggtggaatcctgag	16	10	0	2	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	CNTNAP5-524	NM_130773	exon8	c.C1257A	p.S419R	GCTGAGCCTGGAG	.	172	71	127	1	.	0	0	0	0	0	A	125262066	C	A	125262066	3	1	10	1	0	0	0	0	1	0	0	0	3656	738	26	3	1287	3	CNTNAP5	2	125262066	Missense_Mutation	SNP	C	TCGA-OR-A5JB-01A-11D-A29I-10	5346493	125262066	117937307	56	2299										
CNTNAP5	129684	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	125547619	125547619	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	ccggccactgcagcagctacGgcagcatctgccacaacggg	12	16	1	0	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	CNTNAP5-524	NM_130773	exon18	c.G2890T	p.G964C	AGCTACGGCAGCA	.	304	100	204	1	.	0	0	0	0	0	T	125547619	G	T	125547619	3	4	10	1	0	0	0	0	1	0	0	0	3656	1116	39	2	2960	2	CNTNAP5	2	125547619	Missense_Mutation	SNP	G	TCGA-OR-A5JB-01A-11D-A29I-10	285553	125547619	117651754	57	2300										
CNTNAP5	129684	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	125660460	125660460	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	attatcttttacattgcagaGaatcttggtttggattctga	8	5	3	2	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	CNTNAP5-524	NM_130773	exon22	c.G3435A	p.E1145E	TGCAGAGAATCTT	.	85	32	71	0	.	0	0	0	0	0	A	125660460	G	A	125660460	2	1	10	1	0	0	0	0	0	0	0	1	3656	956	33	3		3	CNTNAP5	2	125660460	Silent	SNP	G	TCGA-OR-A5JB-01A-11D-A29I-10	112841	125660460	117538913	58	2301										
POTEF	728378	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	130877801	130877801	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	cagcaccacttgcccatcttGttcctgagtgtcttcatagc	7	14	3	1	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	POTEF-27	NM_001099771	exon3	c.C288A	p.N96K	CATCTTGTTCCTG	.	536	67	343	1	.	0	0	0	0	0	T	130877801	G	T	130877801	3	4	10	1	0	0	0	0	1	0	0	0	12294	1368	48	3	2999	3	POTEF	2	130877801	Missense_Mutation	SNP	G	TCGA-OR-A5JB-01A-11D-A29I-10	5217341	130877801	112321572	59	2302										
IMP4	92856	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	131103419	131103419	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	acgctgtgcaatgtggtcatGcggcatgacatcccagacct	11	12	1	2	rs200939050	alternate_allele	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	IMP4-90	NM_033416	exon6	c.G507T	p.M169I	GGTCATGCGGCAT	.	134	55	79	0	.	89	50	39	0	0	T	131103419	G	T	131103419	3	4	10	1	0	0	0	0	1	0	0	0	7741	1319	46	3	529	3	IMP4	2	131103419	Missense_Mutation	SNP	G	TCGA-OR-A5JB-01A-11D-A29I-10	225618	131103419	112095954	60	2303										
RAB3GAP1	22930	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr2	135922249	135922249	+	Frame_Shift_Del	DEL	T	T	-													0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	gcaggatcattcacaagctgTttgtgaatgcccagagggta					novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	RAB3GAP1-92	NM_001172435	exon23	c.2692delT	p.F898fs	AAGCTGTTTGTGA	.	135	17	84	0	.	0	0	0	0	0	-	135922249	T	-	135922249	7	5	10	1	0	1	0	1	0	0	0	0	12970	1725	60	0	2782	0	RAB3GAP1	2	135922249	Frame_Shift_Del	DEL	T	TCGA-OR-A5JB-01A-11D-A29I-10	4818830	135922249	107277124	61	2304										
ZEB2	9839	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	145153988	145153988	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	gtcactcatacctgtgtgttCgtatttatgtcgcagaaggg	11	8	2	1	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	ZEB2-297	NM_014795	exon9	c.G3058T	p.E1020X	TGTGTTCGTATTT	.	315	88	199	0	.	0	0	0	0	0	A	145153988	C	A	145153988	4	1	10	1	0	0	0	0	0	1	0	0	17661	893	31	2	594	2	ZEB2	2	145153988	Nonsense_Mutation	SNP	C	TCGA-OR-A5JB-01A-11D-A29I-10	9231739	145153988	98045385	62	2305										
ACVR1	90	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	158626945	158626945	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	tttccctgaaccatgacttcTcatcacgggaggagaagatc	9	11	2	4	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	ACVR1-980	NM_001105	exon7	c.A725T	p.E242V	GACTTCTCATCAC	.	161	53	99	0	.	4	3	1	0	0	A	158626945	T	A	158626945	3	1	10	1	0	0	0	0	1	0	0	0	220	1551	54	5	824	5	ACVR1	2	158626945	Missense_Mutation	SNP	T	TCGA-OR-A5JB-01A-11D-A29I-10	13472957	158626945	84572428	63	2306										
SCN2A	6326	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	166152582	166152582	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	cccctggaggatctggacccCtactatatcaataagaaagt	8	11	2	1	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	SCN2A-142	NM_001040143	exon1	c.C249A	p.P83P	GGACCCCTACTAT	.	157	62	146	0	.	0	0	0	0	0	A	166152582	C	A	166152582	2	1	10	1	0	0	0	0	0	0	0	1	13951	668	24	3		3	SCN2A	2	166152582	Silent	SNP	C	TCGA-OR-A5JB-01A-11D-A29I-10	7525637	166152582	77046791	64	2307										
SESTD1	91404	bcgsc.ca	37	chr2	179979930	179979930	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	cgagaagtgcagcgcaaagaTtggcataacacaactgtggc	12	9	0	2	rs2289993	byfrequency	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	SESTD1-228	NM_178123	exon16	c.A1701G	p.Q567Q	CAAAGATTGGCAT	.	151	5	92	1	T|0.810;C|0.190	10	10	0	0	0	C	179979930	T	C	179979930	2	2	10	1	0	0	0	0	0	0	0	1	14162	1490	52	4		4	SESTD1	2	179979930	Silent	SNP	T	TCGA-OR-A5JB-01A-11D-A29I-10	13827348	179979930	63219443	65	2308										
ITGA4	3676	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	182374441	182374441	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	gaagctgcttaccaccttggTcctcatgtcatcagtaaacg	8	12	3	0	rs201546110		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	ITGA4-230	NM_000885	exon16	c.T1752A	p.G584G	CCTTGGTCCTCAT	.	81	14	76	1	.	3	2	1	0	0	A	182374441	T	A	182374441	2	1	10	1	0	0	0	0	0	0	0	1	7899	1654	58	5		5	ITGA4	2	182374441	Silent	SNP	T	TCGA-OR-A5JB-01A-11D-A29I-10	2394511	182374441	60824932	66	2309										
PDE1A	5136	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	183088596	183088596	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	ctttttcagacttaccttgtCtgaatgtgaaagttgtttgt	8	6	2	3	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	PDE1A-93	NM_001258312	exon8	c.G831A	p.Q277Q	CCTTGTCTGAATG	.	118	34	126	0	.	0	0	0	0	0	T	183088596	C	T	183088596	2	4	10	1	0	0	0	0	0	0	0	1	11662	912	32	3		3	PDE1A	2	183088596	Silent	SNP	C	TCGA-OR-A5JB-01A-11D-A29I-10	714155	183088596	60110777	67	2310										
PDE1A	5136	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	183088641	183088641	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	cctgtatgctcataatcatgAatggcagcagcaaagaccat	8	10	2	2	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	PDE1A-93	NM_001258312	exon8	c.T786G	p.I262M	ATCATGAATGGCA	.	190	59	172	1	.	0	0	0	0	0	C	183088641	A	C	183088641	3	2	10	1	0	0	0	0	1	0	0	0	11662	242	9	5	943	5	PDE1A	2	183088641	Missense_Mutation	SNP	A	TCGA-OR-A5JB-01A-11D-A29I-10	45	183088641	60110732	68	2311										
SF3B1	23451	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	198257760	198257760	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	tcaggccctctagggctcccAtaactgcctgaattacatga	8	13	2	2	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	SF3B1-140	NM_012433	exon24	c.T3692C	p.M1231T	GCTCCCATAACTG	.	279	96	261	1	.	362	199	163	0	0	G	198257760	A	G	198257760	3	3	10	1	0	0	0	0	1	0	0	0	14184	217	8	4	230	4	SF3B1	2	198257760	Missense_Mutation	SNP	A	TCGA-OR-A5JB-01A-11D-A29I-10	15169119	198257760	44941613	69	2312										
NBEAL1	65065	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	203972654	203972654	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	cgtcgactactgagattgctGagagtggatgaatctgagtc	13	7	1	4	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	NBEAL1-92	NM_001114132	exon13	c.G1605A	p.L535L	ATTGCTGAGAGTG	.	109	34	77	0	.	0	0	0	0	0	A	203972654	G	A	203972654	2	1	10	1	0	0	0	0	0	0	0	1	10216	1277	45	3		3	NBEAL1	2	203972654	Silent	SNP	G	TCGA-OR-A5JB-01A-11D-A29I-10	5714894	203972654	39226719	70	2313										
NBEAL1	65065	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	204075696	204075696	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	ttcaggataagaatgcattaCatctgttttctataaatggc	7	6	3	1	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	NBEAL1-92	NM_001114132	exon53	c.C7714T	p.H2572Y	GCATTACATCTGT	.	70	13	113	1	.	1	1	0	0	0	T	204075696	C	T	204075696	3	4	10	1	0	0	0	0	1	0	0	0	10216	478	17	3	7920	3	NBEAL1	2	204075696	Missense_Mutation	SNP	C	TCGA-OR-A5JB-01A-11D-A29I-10	103042	204075696	39123677	71	2314										
CRYGA	1418	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	209028275	209028275	+	Silent	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	cacctccacaggctcaccttCcccatggttgttgacagagg	9	15	1	2	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	CRYGA-90	NM_014617	exon1	c.G6T	p.G2G	CACCTTCCCCATG	.	317	129	203	1	.	0	0	0	0	0	A	209028275	C	A	209028275	2	1	10	1	0	0	0	0	0	0	0	1	3920	842	30	3		3	CRYGA	2	209028275	Silent	SNP	C	TCGA-OR-A5JB-01A-11D-A29I-10	4952579	209028275	34171098	72	2315										
CPS1	1373	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	211456582	211456582	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	aatcagcctgttttgaatatCacaaacaaacaggctttcat	5	9	3	1	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	CPS1-162	NM_001122633	exon11	c.C993T	p.I331I	GAATATCACAAAC	.	56	21	31	0	.	0	0	0	0	0	T	211456582	C	T	211456582	2	4	10	1	0	0	0	0	0	0	0	1	3829	816	29	3		3	CPS1	2	211456582	Silent	SNP	C	TCGA-OR-A5JB-01A-11D-A29I-10	2428307	211456582	31742791	73	2316										
PECR	55825	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	216930060	216930060	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	ttgcacatgtagaaggtaccCgtcaggttggtctcaagcac	11	10	2	1	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	PECR-90	NM_018441	exon3	c.G399T	p.T133T	GGTACCCGTCAGG	.	160	51	110	0	.	27	13	14	0	0	A	216930060	C	A	216930060	2	1	10	1	0	0	0	0	0	0	0	1	11746	639	23	2		2	PECR	2	216930060	Silent	SNP	C	TCGA-OR-A5JB-01A-11D-A29I-10	5473478	216930060	26269313	74	2317										
SPEG	10290	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	220332029	220332029	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	gtggattggctgtgccgtggCcgcctgctgcagcctgcact	15	13	0	0	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	SPEG-383	NM_005876	exon10	c.C3015T	p.G1005G	CCGTGGCCGCCTG	.	105	34	47	0	.	0	0	0	0	0	T	220332029	C	T	220332029	2	4	10	1	0	0	0	0	0	0	0	1	15073	726	26	3		3	SPEG	2	220332029	Silent	SNP	C	TCGA-OR-A5JB-01A-11D-A29I-10	3401969	220332029	22867344	75	2318										
CUL3	8452	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	225379488	225379488	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	tttgttgtacatacacacggTcctacagttaaagtcatata	6	8	1	0	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	CUL3-229	NM_001257198	exon4	c.A398T	p.D133V	ACACGGTCCTACA	.	128	48	107	0	.	0	0	0	0	0	A	225379488	T	A	225379488	3	1	10	1	0	0	0	0	1	0	0	0	4062	1681	58	5	1978	5	CUL3	2	225379488	Missense_Mutation	SNP	T	TCGA-OR-A5JB-01A-11D-A29I-10	5047459	225379488	17819885	76	2319										
SPHKAP	80309	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	228883966	228883966	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	ggggtgcttgagtttgcagtGcaccactgctccctggggga	16	10	0	1	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	SPHKAP-167	NM_030623	exon7	c.C1604A	p.A535E	TGCAGTGCACCAC	.	60	17	41	0	.	0	0	0	0	0	T	228883966	G	T	228883966	3	4	10	1	0	0	0	0	1	0	0	0	15085	1319	46	3	3522	3	SPHKAP	2	228883966	Missense_Mutation	SNP	G	TCGA-OR-A5JB-01A-11D-A29I-10	3504478	228883966	14315407	77	2320										
TRPM8	79054	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	234878408	234878408	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	actggaagattatcctgtgtCtgtttattatacccttggtg	9	7	1	1	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	TRPM8-94	NM_024080	exon16	c.C2095G	p.L699V	CTGTGTCTGTTTA	.	257	106	230	0	.	0	0	0	0	0	G	234878408	C	G	234878408	3	3	10	1	0	0	0	0	1	0	0	0	16630	912	32	3	2153	3	TRPM8	2	234878408	Missense_Mutation	SNP	C	TCGA-OR-A5JB-01A-11D-A29I-10	5994442	234878408	8320965	78	2321										
ANKRD28	23243	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	15778712	15778712	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	ctcgagcattaacatctgcaGaatgcttcaaaagtacctga	7	10	2	2	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	ANKRD28-135	NM_015199	exon5	c.C290G	p.S97C	TCTGCAGAATGCT	.	46	24	68	0	.	3	0	3	0	0	C	15778712	G	C	15778712	3	2	10	1	0	0	0	0	1	0	0	0	656	942	33	3	2967	3	ANKRD28	3	15778712	Missense_Mutation	SNP	G	TCGA-OR-A5JB-01A-11D-A29I-10		15778712	182243718	79	2322										
GOLGA4	2803	hgsc.bcm.edu	37	chr3	37336491	37336491	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	agctccaaatggaccagcagGcaaagaaacatctgcaagag	10	10	1	2	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	GOLGA4-93	NM_001172713	exon7	c.G670T	p.A224S	CAGCAGGCAAAGA	.	81	6	123	0	.	0	0	0	0	0	T	37336491	G	T	37336491	3	4	10	1	0	0	0	0	1	0	0	0	6575	1203	42	3	696	3	GOLGA4	3	37336491	Missense_Mutation	SNP	G	TCGA-OR-A5JB-01A-11D-A29I-10	21557779	37336491	160685939	80	2323										
HHATL	57467	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	42739085	42739085	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	aagtgaaagaagatgtcgacGgccatgatggccaccacgct	12	10	0	4	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	HHATL-93	NM_020707	exon7	c.C780A	p.A260A	GTCGACGGCCATG	.	230	122	214	0	.	0	0	0	0	0	T	42739085	G	T	42739085	2	4	10	1	0	0	0	0	0	0	0	1	7111	1103	39	2		2	HHATL	3	42739085	Silent	SNP	G	TCGA-OR-A5JB-01A-11D-A29I-10	5402594	42739085	155283345	81	2324										
BSN	8927	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	49692898	49692898	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	tgggccccatgaggagcagaGgccctacccacaaggcctgc	13	15	0	2	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	BSN-97	NM_003458	exon5	c.G5909T	p.R1970M	AGCAGAGGCCCTA	.	18	10	30	0	.	0	0	0	0	0	T	49692898	G	T	49692898	3	4	10	1	0	0	0	0	1	0	0	0	1533	1000	35	3	5927	3	BSN	3	49692898	Missense_Mutation	SNP	G	TCGA-OR-A5JB-01A-11D-A29I-10	6953813	49692898	148329532	82	2325										
RBM15B	29890	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	51430916	51430916	+	Nonsense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	ggaccacagaggccgagcccAagcctctggaagagccaaaa	12	13	1	2	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	RBM15B-90	NM_013286	exon1	c.A2086T	p.K696X	GAGCCCAAGCCTC	.	206	123	222	0	.	46	5	41	0	0	T	51430916	A	T	51430916	4	4	10	1	0	0	0	0	0	1	0	0	13152	131	5	5	2088	5	RBM15B	3	51430916	Nonsense_Mutation	SNP	A	TCGA-OR-A5JB-01A-11D-A29I-10	1738018	51430916	146591514	83	2326										
DNAH1	25981	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	52430932	52430932	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	attacgggggccgtgtcactGatgactgggaccggcgctgc	16	11	1	2	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	DNAH1-67	NM_015512	exon73	c.G11659T	p.D3887Y	GTCACTGATGACT	.	114	68	150	1	.	2	1	1	0	0	T	52430932	G	T	52430932	3	4	10	1	0	0	0	0	1	0	0	0	4608	1290	45	3	11945	3	DNAH1	3	52430932	Missense_Mutation	SNP	G	TCGA-OR-A5JB-01A-11D-A29I-10	1000016	52430932	145591498	84	2327										
ARHGEF3	50650	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	56992915	56992915	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	tgttttgccgctgccgtttaGgcctagaagagaaaagacaa	11	8	0	3	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	ARHGEF3-228	NM_001128615	exon3	c.C65G	p.P22R	CGTTTAGGCCTAG	.	130	78	125	0	.	0	0	0	0	0	C	56992915	G	C	56992915	3	2	10	1	0	0	0	0	1	0	0	0	904	1000	35	3	1873	3	ARHGEF3	3	56992915	Missense_Mutation	SNP	G	TCGA-OR-A5JB-01A-11D-A29I-10	4561983	56992915	141029515	85	2328										
PSMD6	9861	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	64008128	64008128	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	atcttcatttgccttcttcaTtttattgagtaggtccacgt	6	9	4	1	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	PSMD6-91	NM_001271779	exon3	c.A376T	p.M126L	TCTTCATTTTATT	.	149	81	171	2	.	30	8	22	0	0	A	64008128	T	A	64008128	3	1	10	1	0	0	0	0	1	0	0	0	12734	1493	52	5	980	5	PSMD6	3	64008128	Missense_Mutation	SNP	T	TCGA-OR-A5JB-01A-11D-A29I-10	7015213	64008128	134014302	86	2329										
ROBO2	6092	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	77666782	77666782	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	cacctcctgttcgaggcgtgGcttcttctcctgctatctcc	8	16	3	0	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	ROBO2-328	NM_002942	exon22	c.G3412T	p.A1138S	GGCGTGGCTTCTT	.	164	93	148	0	.	0	0	0	0	0	T	77666782	G	T	77666782	3	4	10	1	0	0	0	0	1	0	0	0	13549	1203	42	3	3500	3	ROBO2	3	77666782	Missense_Mutation	SNP	G	TCGA-OR-A5JB-01A-11D-A29I-10	13658654	77666782	120355648	87	2330										
SEMA5B	54437	hgsc.bcm.edu	37	chr3	122631896	122631896	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	tgctcccgctgcgcaggaggAcctccaccagggctgcggag	15	15	0	0	rs2276782	byfrequency	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	SEMA5B-157	NM_001256347	exon18	c.T2681A	p.V894D	AGGAGGACCTCCA	.	9	9	0	0	T|0.412;A|0.588	0	0	0	0	0	T	122631896	A	T	122631896	3	4	10	1	0	0	0	0	1	0	0	0	14073	275	10	5	960	5	SEMA5B	3	122631896	Missense_Mutation	SNP	A	TCGA-OR-A5JB-01A-11D-A29I-10	44965114	122631896	75390534	88	2331										
P2RY14	9934	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr3	150931660	150931660	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	tggaacagcaaggaggagcaTgagcatccatactatcactg	11	9	1	1	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	P2RY14-563	NM_014879	exon3	c.A445G	p.M149V	GGAGCATGAGCAT	.	168	13	88	0	.	0	0	0	0	0	C	150931660	T	C	150931660	3	2	10	1	0	0	0	0	1	0	0	0	11380	1464	51	4	575	4	P2RY14	3	150931660	Missense_Mutation	SNP	T	TCGA-OR-A5JB-01A-11D-A29I-10	28299764	150931660	47090770	89	2332										
NAALADL2	254827	broad.mit.edu	37	chr3	175293828	175293829	+	Splice_Site	INS	-	-	A													0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	atttaaattatgtttttcagINSaaaaataatttcaactgtac					novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	NAALADL2-47	NM_207015	exon10	c.1654-1->A	.	TTTTCAGAAAAAT	.	54	8	48	0	.	0	0	0	0	0	A	175293829	-	A	175293828	8	5	10	1	0	1	1	0	0	0	1	0	10158	956	33	0	1691	0	NAALADL2	3	175293828	Splice_Site	INS	-	TCGA-OR-A5JB-01A-11D-A29I-10	24362168	175293828	22728602	90	2333										
MUC4	4585	bcgsc.ca	37	chr3	195511911	195511911	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	gtggatgctgaggaagtgtcGgtgacaggaagagaggtggc	20	4	0	3	rs200732241		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	MUC4-90	NM_018406	exon2	c.C6540T	p.T2180T	AGTGTCGGTGACA	.	1336	85	586	27	G|0.998;A|0.002	0	0	0	0	0	A	195511911	G	A	195511911	2	1	10	1	0	0	0	0	0	0	0	1	10006	1103	39	1		1	MUC4	3	195511911	Silent	SNP	G	TCGA-OR-A5JB-01A-11D-A29I-10	20218083	195511911	2510519	91	2334										
TNK2	10188	hgsc.bcm.edu	37	chr3	195594805	195594805	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	ggaggcacccggggaggggaAgcaggtccaggccactggct	19	11	0	0	rs1056749	byfrequency	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	TNK2-957	NM_001010938	exon13	c.T2553C	p.A851A	AGGGGAAGCAGGT	.	5	4	1	0	A|0.886;G|0.114	6	1	5	0	0	G	195594805	A	G	195594805	2	3	10	1	0	0	0	0	0	0	0	1	16355	59	3	4		4	TNK2	3	195594805	Silent	SNP	A	TCGA-OR-A5JB-01A-11D-A29I-10	82894	195594805	2427625	92	2335										
CRIPAK	285464	hgsc.bcm.edu	37	chr4	1388974	1388974	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	cgcctgctcacacgtgccgaTgcggagtgcccgcctgctca	12	17	2	0	rs71614969	bycluster	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	CRIPAK-90	NM_175918	exon1	c.T675C	p.D225D	TGCCGATGCGGAG	.	12	9	1	0	C|1.000;|0.000	5	3	2	0	0	C	1388974	T	C	1388974	2	2	10	1	0	0	0	0	0	0	0	1	3883	1461	51	4		4	CRIPAK	4	1388974	Silent	SNP	T	TCGA-OR-A5JB-01A-11D-A29I-10		1388974	189765302	93	2336										
OTOP1	133060	hgsc.bcm.edu	37	chr4	4228456	4228456	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	gctggcgcgcacaccgccccGccggggggccggggattccg	18	17	0	0	rs73191872	bycluster;by1000genomes	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	OTOP1-92	NM_177998	exon1	c.C136A	p.R46R	CGCCCCGCCGGGG	.	44	22	2	0	.	0	0	0	0	0	T	4228456	G	T	4228456	2	4	10	1	0	0	0	0	0	0	0	1	11334	1086	38	2		2	OTOP1	4	4228456	Silent	SNP	G	TCGA-OR-A5JB-01A-11D-A29I-10	2839482	4228456	186925820	94	2337										
GPR78	27201	hgsc.bcm.edu	37	chr4	8583231	8583231	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	cgcttcgcagccttcaccgcCacgctccatgccgtgggctt	10	18	1	0	rs61741008	byfrequency	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	GPR78-516	NM_080819	exon1	c.C522A	p.A174A	CACCGCCACGCTC	.	17	6	1	0	C|0.992;A|0.008	0	0	0	0	0	A	8583231	C	A	8583231	2	1	10	1	0	0	0	0	0	0	0	1	6730	581	21	3		3	GPR78	4	8583231	Silent	SNP	C	TCGA-OR-A5JB-01A-11D-A29I-10	4354775	8583231	182571045	95	2338										
KCNIP4	80333	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	20884247	20884247	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	ttgctttgaatagcaggagaCgacgttttggcagctgagca	13	7	0	3	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	KCNIP4-91	NM_025221	exon1	c.G87T	p.S29S	AGGAGACGACGTT	.	34	18	50	0	.	0	0	0	0	0	A	20884247	C	A	20884247	2	1	10	1	0	0	0	0	0	0	0	1	8063	523	19	2		2	KCNIP4	4	20884247	Silent	SNP	C	TCGA-OR-A5JB-01A-11D-A29I-10	12301016	20884247	170270029	96	2339										
GABRA2	2555	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	46252425	46252425	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	gaaaaactattctggacattCtgtcaattttgctaacactg	6	8	3	0	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	GABRA2-94	NM_000807	exon10	c.G1256C	p.R419T	GACATTCTGTCAA	.	58	31	80	0	.	0	0	0	0	0	G	46252425	C	G	46252425	3	3	10	1	0	0	0	0	1	0	0	0	6180	913	32	3	103	3	GABRA2	4	46252425	Missense_Mutation	SNP	C	TCGA-OR-A5JB-01A-11D-A29I-10	25368178	46252425	144901851	97	2340										
CORIN	10699	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	47765548	47765548	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	actgagaggagaggtgtcagCgtggcgtggtagggcagcat	19	6	1	2	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	CORIN-91	NM_006587	exon4	c.G465C	p.T155T	TGTCAGCGTGGCG	.	156	85	142	0	.	0	0	0	0	0	G	47765548	C	G	47765548	2	3	10	1	0	0	0	0	0	0	0	1	3758	755	27	2		2	CORIN	4	47765548	Silent	SNP	C	TCGA-OR-A5JB-01A-11D-A29I-10	1513123	47765548	143388728	98	2341										
TMPRSS11B	132724	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	69094576	69094576	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	gtcaataatcttcaaaaagtCttcttgaagtatcactggaa	6	7	6	1	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	TMPRSS11B-91	NM_182502	exon9	c.G973T	p.D325Y	AAAAGTCTTCTTG	.	140	76	149	0	.	0	0	0	0	0	A	69094576	C	A	69094576	3	1	10	1	0	0	0	0	1	0	0	0	16277	913	32	3	285	3	TMPRSS11B	4	69094576	Missense_Mutation	SNP	C	TCGA-OR-A5JB-01A-11D-A29I-10	21329028	69094576	122059700	99	2342										
UGT2A3	79799	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	69817028	69817028	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	caggtctccacagggaatcaCagggtctataagcattacat	9	10	3	0	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	UGT2A3-92	NM_024743	exon1	c.G451T	p.V151L	GAATCACAGGGTC	.	146	72	234	0	.	0	0	0	0	0	A	69817028	C	A	69817028	3	1	10	1	0	0	0	0	1	0	0	0	16993	478	17	3	1156	3	UGT2A3	4	69817028	Missense_Mutation	SNP	C	TCGA-OR-A5JB-01A-11D-A29I-10	722452	69817028	121337248	100	2343										
DSPP	1834	bcgsc.ca	37	chr4	88536233	88536238	+	In_Frame_Del	DEL	AGTGAT	AGTGAT	-													0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	gcagtgatagcagcaacagcAgtgatagcagtgatagcagt					rs200486992	alternate_allele	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	AGTGAT	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	DSPP-90	NM_014208	exon5	c.2419_2424del	p.807_808del	AACAGCAGTGATA	.	987	27	968	8	.	0	0	0	0	0	-	88536238	AGTGAT	-	88536233	7	5	10	1	0	1	0	1	0	0	0	0	4793	188	7	0	2433	0	DSPP	4	88536233	In_Frame_Del	DEL	AGTGAT	TCGA-OR-A5JB-01A-11D-A29I-10	18719205	88536233	102618043	101	2344										
PDHA2	5161	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	96762414	96762414	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	cacatctacagcagtgattcAtcttttgaagttcgtggtgc	9	9	3	2	rs150761581	byfrequency;alternate_allele	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	PDHA2-90	NM_005390	exon1	c.A1113G	p.S371S	TGATTCATCTTTT	.	184	125	172	0	A|0.998;C|0.002	0	0	0	0	0	G	96762414	A	G	96762414	2	3	10	1	0	0	0	0	0	0	0	1	11694	204	8	4		4	PDHA2	4	96762414	Silent	SNP	A	TCGA-OR-A5JB-01A-11D-A29I-10	8226181	96762414	94391862	102	2345										
SEC24B	10427	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	110448529	110448529	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	tttgccagtggtaagttcacTagcagatgtatatgcgggag	13	6	1	1	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	SEC24B-137	NM_006323	exon18	c.T3017C	p.L1006P	GTTCACTAGCAGA	.	69	41	98	0	.	11	0	11	0	0	C	110448529	T	C	110448529	3	2	10	1	0	0	0	0	1	0	0	0	14030	1522	53	4	3087	4	SEC24B	4	110448529	Missense_Mutation	SNP	T	TCGA-OR-A5JB-01A-11D-A29I-10	13686115	110448529	80705747	103	2346										
PITX2	5308	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	111542464	111542464	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	cgctgccgcctttgccgcttCttcttagacgggtcctcggc	11	16	2	1	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	PITX2-650	NM_000325	exon2	c.G267C	p.K89N	CCGCTTCTTCTTA	.	50	23	62	0	.	1	0	1	0	0	G	111542464	C	G	111542464	3	3	10	1	0	0	0	0	1	0	0	0	11984	912	32	3	715	3	PITX2	4	111542464	Missense_Mutation	SNP	C	TCGA-OR-A5JB-01A-11D-A29I-10	1093935	111542464	79611812	104	2347										
ANK2	287	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	114163347	114163347	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	ttactggatcgaggcggtcaGatcgatgccaaaactagggt	13	8	1	1	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	ANK2-583	NM_001148	exon9	c.G873T	p.Q291H	CGGTCAGATCGAT	.	142	73	166	0	.	0	0	0	0	0	T	114163347	G	T	114163347	3	4	10	1	0	0	0	0	1	0	0	0	621	933	33	3	932	3	ANK2	4	114163347	Missense_Mutation	SNP	G	TCGA-OR-A5JB-01A-11D-A29I-10	2620883	114163347	76990929	105	2348										
KIAA1109	84162	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	123268929	123268929	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	atctgattcttcagttcctcGaagaggtaacactgctcttt	7	10	4	2	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	KIAA1109-80	NM_015312	exon74	c.G13124A	p.R4375Q	TTCCTCGAAGAGG	.	165	103	119	0	.	0	0	0	0	0	A	123268929	G	A	123268929	3	1	10	1	0	0	0	0	1	0	0	0	8229	1058	37	1	13418	1	KIAA1109	4	123268929	Missense_Mutation	SNP	G	TCGA-OR-A5JB-01A-11D-A29I-10	9105582	123268929	67885347	106	2349										
FAT4	79633	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	126238731	126238731	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	tgacggacgcagattctcccGcggccaacgggaacatctcc	11	15	2	2	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	FAT4-108	NM_024582	exon1	c.G1165T	p.A389S	TCTCCCGCGGCCA	.	275	157	223	0	.	0	0	0	0	0	T	126238731	G	T	126238731	3	4	10	1	0	0	0	0	1	0	0	0	5711	1087	38	2	1167	2	FAT4	4	126238731	Missense_Mutation	SNP	G	TCGA-OR-A5JB-01A-11D-A29I-10	2969802	126238731	64915545	107	2350										
FSTL5	56884	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	162954783	162954783	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	caatcatttcttacctttgaCtcttgaactttcttgatttt	3	9	4	3	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	FSTL5-158	NM_020116	exon3	c.G154T	p.V52F	CTTTGACTCTTGA	.	16	9	44	0	.	0	0	0	0	0	A	162954783	C	A	162954783	3	1	10	1	0	0	0	0	1	0	0	0	6099	565	20	3	2445	3	FSTL5	4	162954783	Missense_Mutation	SNP	C	TCGA-OR-A5JB-01A-11D-A29I-10	36716052	162954783	28199493	108	2351										
ACSL1	2180	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	185687098	185687098	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	cacagtggcagacaccggggCggctcctgtcaccatcagcc	12	16	2	1	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	ACSL1-92	NM_001995	exon14	c.G1306T	p.A436S	CCGGGGCGGCTCC	.	155	89	158	1	.	0	0	0	0	0	A	185687098	C	A	185687098	3	1	10	1	0	0	0	0	1	0	0	0	177	768	27	2	822	2	ACSL1	4	185687098	Missense_Mutation	SNP	C	TCGA-OR-A5JB-01A-11D-A29I-10	22732315	185687098	5467178	109	2352										
ADCY2	108	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	7802377	7802377	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	cgtctgcgtcatgtttgcctCcattccggatttcaaagaat	8	11	3	1	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	ADCY2-97	NM_020546	exon21	c.C2675T	p.S892F	TTGCCTCCATTCC	.	126	42	97	0	.	0	0	0	0	0	T	7802377	C	T	7802377	3	4	10	1	0	0	0	0	1	0	0	0	294	855	30	3	2757	3	ADCY2	5	7802377	Missense_Mutation	SNP	C	TCGA-OR-A5JB-01A-11D-A29I-10		7802377	173112883	110	2353										
C5orf49	134121	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	7832052	7832052	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	agcctgcacatggttggcacGgccaaagtcccggtttaggg	14	11	0	0	rs202097565		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	C5orf49-22	NM_001089584	exon3	c.C355T	p.R119C	TGGCACGGCCAAA	.	157	51	98	1	.	0	0	0	0	0	A	7832052	G	A	7832052	3	1	10	1	0	0	0	0	1	0	0	0	2313	1116	39	1	92	1	C5orf49	5	7832052	Missense_Mutation	SNP	G	TCGA-OR-A5JB-01A-11D-A29I-10	29675	7832052	173083208	111	2354										
PRDM9	56979	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	23527817	23527817	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	ggggctttagcgataggtcaAgcctctgctatcaccagagg	13	10	3	1	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	PRDM9-139	NM_020227	exon11	c.A2620T	p.S874C	AGGTCAAGCCTCT	.	284	115	194	0	.	0	0	0	0	0	T	23527817	A	T	23527817	3	4	10	1	0	0	0	0	1	0	0	0	12495	72	3	5	2658	5	PRDM9	5	23527817	Missense_Mutation	SNP	A	TCGA-OR-A5JB-01A-11D-A29I-10	15695765	23527817	157387443	112	2355										
CDH9	1007	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	26881656	26881657	+	Missense_Mutation	DNP	CC	CC	AA													0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	ttgtaggtcacaatgttgtcCcggacatcgtcttttgaaat					novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	CC	CC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	CDH9-99	NM_016279	exon12	c.G1958T	p.R653L	TTGTCCCGGACAT	.	45	1	43	0	.	0	0	0	0	0	AA	26881657	CC	AA	26881656	3	1	10	1	0	0	0	0	1	0	0	0	3123	610	22	3	414	3	CDH9	5	26881656	Missense_Mutation	DNP	CC	TCGA-OR-A5JB-01A-11D-A29I-10	3353839	26881656	154033604	113	2356										
OSMR	9180	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	38869147	38869147	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	ttttcagaaaaccagaactgAtggctctatttgcagtcttt	7	8	3	3	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	OSMR-496	NM_001168355	exon2	c.A1G	p.M1V	GAACTGATGGCTC	.	98	25	104	0	.	0	0	0	0	0	G	38869147	A	G	38869147	3	3	10	1	0	0	0	0	1	0	0	0	11321	333	12	4	3	4	OSMR	5	38869147	Missense_Mutation	SNP	A	TCGA-OR-A5JB-01A-11D-A29I-10	11987491	38869147	142046113	114	2357										
FYB	2533	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	39118988	39118988	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	tgacttacatttcccttcttCatttctgcagagaacttttg	5	10	3	2	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	FYB-24	NM_001243093	exon16	c.G2419A	p.E807K	CTTCTTCATTTCT	.	88	15	80	0	.	0	0	0	0	0	T	39118988	C	T	39118988	3	4	10	1	0	0	0	0	1	0	0	0	6143	835	29	3	116	3	FYB	5	39118988	Missense_Mutation	SNP	C	TCGA-OR-A5JB-01A-11D-A29I-10	249841	39118988	141796272	115	2358										
ENC1	8507	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	73930600	73930600	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	aggaatcagcgagtacgggaCagtggtgatgctgttccaca	14	8	1	1	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	ENC1-228	NM_003633	exon2	c.G1711T	p.V571F	ACGGGACAGTGGT	.	413	134	312	0	.	7	6	1	0	0	A	73930600	C	A	73930600	3	1	10	1	0	0	0	0	1	0	0	0	5126	478	17	3	62	3	ENC1	5	73930600	Missense_Mutation	SNP	C	TCGA-OR-A5JB-01A-11D-A29I-10	34811612	73930600	106984660	116	2359										
COL4A3BP	10087	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	74681788	74681788	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	cagacttcatgtcctgtgacGcctttaactgcatgggtagc	10	11	1	2	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	COL4A3BP-226	NM_001130105	exon14	c.C1740A	p.G580G	TGTGACGCCTTTA	.	73	24	60	0	.	0	0	0	0	0	T	74681788	G	T	74681788	2	4	10	1	0	0	0	0	0	0	0	1	3698	1074	38	2		2	COL4A3BP	5	74681788	Silent	SNP	G	TCGA-OR-A5JB-01A-11D-A29I-10	751188	74681788	106233472	117	2360										
FAM81B	153643	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	94764306	94764306	+	Splice_Site	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	caatttccatcttgccattaGatgtgattcaagcattgtga	7	8	2	3	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	FAM81B-92	NM_152548	exon6	c.657-1G>C	.	CCATTAGATGTGA	.	199	85	161	2	.	0	0	0	0	0	C	94764306	G	C	94764306	5	2	10	1	0	0	0	0	0	0	1	0	5648	956	33	3	678	3	FAM81B	5	94764306	Splice_Site	SNP	G	TCGA-OR-A5JB-01A-11D-A29I-10	20082518	94764306	86150954	118	2361										
SLCO4C1	353189	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	101576467	101576467	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	tattcccaaggctagggaccGttgtctgtgattaacacacc	9	11	1	1	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	SLCO4C1-93	NM_180991	exon11	c.C1831T	p.R611W	GGGACCGTTGTCT	.	179	66	206	1	.	0	0	0	0	0	A	101576467	G	A	101576467	3	1	10	1	0	0	0	0	1	0	0	0	14765	1144	40	1	355	1	SLCO4C1	5	101576467	Missense_Mutation	SNP	G	TCGA-OR-A5JB-01A-11D-A29I-10	6812161	101576467	79338793	119	2362										
IL3	3562	bcgsc.ca	37	chr5	131396478	131396478	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	ctcccatgacccagacaacgCccttgaagacaagctgggtt	9	14	0	4	rs40401	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	IL3-92	NM_000588	exon1	c.C79T	p.P27S	ACAACGCCCTTGA	.	251	9	134	0	C|0.616;N|0.000	0	0	0	0	0	T	131396478	C	T	131396478	3	4	10	1	0	0	0	0	1	0	0	0	7710	739	26	3	81	3	IL3	5	131396478	Missense_Mutation	SNP	C	TCGA-OR-A5JB-01A-11D-A29I-10	29820011	131396478	49518782	120	2363										
PCDHB13	56123	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	140595249	140595249	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	cacctgttcgccctcaggtcTctggactacgaggccctgca	10	16	2	0	rs144959109	byfrequency	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	PCDHB13-93	NM_018933	exon1	c.T1554G	p.S518S	CAGGTCTCTGGAC	.	548	214	172	2	T|0.999;G|0.001	2	0	2	0	0	G	140595249	T	G	140595249	2	3	10	1	0	0	0	0	0	0	0	1	11567	1538	54	5		5	PCDHB13	5	140595249	Silent	SNP	T	TCGA-OR-A5JB-01A-11D-A29I-10	9198771	140595249	40320011	121	2364										
PCDHGA3	56112	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	140723866	140723866	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	cagcttggtcaccgcggagaGgatagaccgggaggagctct	16	10	2	2	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	PCDHGA3-68	NM_032011	exon1	c.G266T	p.R89M	CGGAGAGGATAGA	.	116	42	122	0	.	0	0	0	0	0	T	140723866	G	T	140723866	3	4	10	1	0	0	0	0	1	0	0	0	11584	1000	35	3	268	3	PCDHGA3	5	140723866	Missense_Mutation	SNP	G	TCGA-OR-A5JB-01A-11D-A29I-10	128617	140723866	40191394	122	2365										
FAT2	2196	ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	150946780	150946780	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	ggccagtcttggcggatagaCcctgtacagttgacttcttc	11	11	2	2	rs35225143	byfrequency	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	FAT2-96	NM_001447	exon1	c.G1713T	p.G571G	GATAGACCCTGTA	.	178	55	142	0	C|0.948;A|0.052	0	0	0	0	0	A	150946780	C	A	150946780	2	1	10	1	0	0	0	0	0	0	0	1	5709	494	18	3		3	FAT2	5	150946780	Silent	SNP	C	TCGA-OR-A5JB-01A-11D-A29I-10	10222914	150946780	29968480	123	2366										
GLRA1	2741	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr5	151231112	151231112	+	Frame_Shift_Del	DEL	A	A	-													0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	aatatacatctgaatcaggtAgtaacccatctgccgctcca					novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	GLRA1-91	NM_000171	exon7	c.751delT	p.Y251fs	TCAGGTAGTAACC	.	313	130	224	0	.	0	0	0	0	0	-	151231112	A	-	151231112	7	5	10	1	0	1	0	1	0	0	0	0	6474	420	15	0	634	0	GLRA1	5	151231112	Frame_Shift_Del	DEL	A	TCGA-OR-A5JB-01A-11D-A29I-10	284332	151231112	29684148	124	2367										
HAVCR1	26762	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	156482398	156482398	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	ataggtgacgtgggttccatTggtccagacaatgccatttt	11	8	0	2	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	HAVCR1-92	NM_001099414	exon3	c.A193G	p.N65D	TTCCATTGGTCCA	.	235	95	171	1	.	0	0	0	0	0	C	156482398	T	C	156482398	3	2	10	1	0	0	0	0	1	0	0	0	6994	1812	63	4	929	4	HAVCR1	5	156482398	Missense_Mutation	SNP	T	TCGA-OR-A5JB-01A-11D-A29I-10	5251286	156482398	24432862	125	2368										
CDHR2	54825	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	176016115	176016115	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	atctctaaggacggggccacCatccctttccagggtgtctt	10	13	2	0	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	CDHR2-70	NM_017675	exon22	c.C2940A	p.T980T	GGCCACCATCCCT	.	191	62	163	0	.	2	0	2	0	0	A	176016115	C	A	176016115	2	1	10	1	0	0	0	0	0	0	0	1	3125	581	21	3		3	CDHR2	5	176016115	Silent	SNP	C	TCGA-OR-A5JB-01A-11D-A29I-10	19533717	176016115	4899145	126	2369										
HK3	3101	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	176314086	176314086	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	gctcaggccctgcttctgctGgaagtccacgatgcagtcca	11	14	2	0	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	HK3-294	NM_002115	exon13	c.C1774A	p.Q592K	TCTGCTGGAAGTC	.	266	98	144	0	.	2	2	0	0	0	T	176314086	G	T	176314086	3	4	10	1	0	0	0	0	1	0	0	0	7213	1357	47	3	1025	3	HK3	5	176314086	Missense_Mutation	SNP	G	TCGA-OR-A5JB-01A-11D-A29I-10	297971	176314086	4601174	127	2370										
GRM6	2916	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	178413936	178413936	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	actggaagatgtcgtaccgcCcgggcgcatctccgttctcg	12	14	2	1	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	GRM6-588	NM_000843	exon7	c.G1403T	p.G468V	TACCGCCCGGGCG	.	168	67	90	1	.	0	0	0	0	0	A	178413936	C	A	178413936	3	1	10	1	0	0	0	0	1	0	0	0	6822	623	22	3	1246	3	GRM6	5	178413936	Missense_Mutation	SNP	C	TCGA-OR-A5JB-01A-11D-A29I-10	2099850	178413936	2501324	128	2371										
ALDH5A1	7915	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	24523089	24523089	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	catgaagaagaacctgcgcgTaggtaatggatttgaggaag	14	5	0	4	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	ALDH5A1-90	NM_170740	exon8	c.T1148C	p.V383A	TGCGCGTAGGTAA	.	111	35	99	0	.	6	3	3	0	0	C	24523089	T	C	24523089	3	2	10	1	0	0	0	0	1	0	0	0	502	1638	57	4	1178	4	ALDH5A1	6	24523089	Missense_Mutation	SNP	T	TCGA-OR-A5JB-01A-11D-A29I-10		24523089	146591978	129	2372										
HIST1H2BA	255626	bcgsc.ca	37	chr6	25727448	25727448	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	acagcagtgcgcttgctactGccgggagagctggctaaaca	13	11	0	1	rs16890972	byfrequency	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	HIST1H2BA-204	NM_170610	exon1	c.G312A	p.L104L	GCTACTGCCGGGA	.	152	6	95	0	G|0.965;A|0.035	0	0	0	0	0	A	25727448	G	A	25727448	2	1	10	1	0	0	0	0	0	0	0	1	7161	1306	46	3		3	HIST1H2BA	6	25727448	Silent	SNP	G	TCGA-OR-A5JB-01A-11D-A29I-10	1204359	25727448	145387619	130	2373										
HIST1H3A	8350	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	26020915	26020915	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	gaactgcttattcgtaaactAcctttccagcgcctggtgcg	9	12	0	0	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	HIST1H3A-92	NM_003529	exon1	c.A198G	p.L66L	TAAACTACCTTTC	.	148	56	75	0	.	0	0	0	0	0	G	26020915	A	G	26020915	2	3	10	1	0	0	0	0	0	0	0	1	7176	378	14	4		4	HIST1H3A	6	26020915	Silent	SNP	A	TCGA-OR-A5JB-01A-11D-A29I-10	293467	26020915	145094152	131	2374										
HIST1H3F	8968	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	26250440	26250440	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	aacttatgccctctctccgcGaatgcggcgagcgagctgga	12	13	1	0	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	HIST1H3F-68	NM_021018	exon1	c.C394G	p.R132G	CTCCGCGAATGCG	.	216	82	152	1	.	0	0	0	0	0	C	26250440	G	C	26250440	3	2	10	1	0	0	0	0	1	0	0	0	7181	1058	37	2	20	2	HIST1H3F	6	26250440	Missense_Mutation	SNP	G	TCGA-OR-A5JB-01A-11D-A29I-10	229525	26250440	144864627	132	2375										
HIST1H2BN	8341	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	27806779	27806779	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	tggccaagcacgcggtgtcgGagggcaccaaggccgtcacc	15	14	1	0	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	HIST1H2BN-68	NM_003520	exon1	c.G340A	p.E114K	GTGTCGGAGGGCA	.	211	74	84	0	.	5	0	5	0	0	A	27806779	G	A	27806779	3	1	10	1	0	0	0	0	1	0	0	0	7174	1175	41	3	342	3	HIST1H2BN	6	27806779	Missense_Mutation	SNP	G	TCGA-OR-A5JB-01A-11D-A29I-10	1556339	27806779	143308288	133	2376										
ZKSCAN3	80317	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	28331530	28331530	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	tgaatggacacagcaggattCatctcaggggaatctctgta	11	8	3	1	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	ZKSCAN3-92	NM_024493	exon5	c.C695T	p.S232L	AGGATTCATCTCA	.	190	63	149	0	.	1	0	1	0	0	T	28331530	C	T	28331530	3	4	10	1	0	0	0	0	1	0	0	0	17725	838	29	3	709	3	ZKSCAN3	6	28331530	Missense_Mutation	SNP	C	TCGA-OR-A5JB-01A-11D-A29I-10	524751	28331530	142783537	134	2377										
HLA-F	3134	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr6	29692009	29692009	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	ggcccgacggacgcctcctcCgcgggtatcaccagcacgcg	13	18	1	0	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	HLA-F-22	NM_001098478	exon3	c.C394T	p.R132C	CTCCTCCGCGGGT	.	237	81	130	0	.	420	285	135	0	0	T	29692009	C	T	29692009	3	4	10	1	0	0	0	0	1	0	0	0	7232	652	23	1	404	1	HLA-F	6	29692009	Missense_Mutation	SNP	C	TCGA-OR-A5JB-01A-11D-A29I-10	1360479	29692009	141423058	135	2378										
TNXB	7148	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	32017977	32017977	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	tggccctcgggaaccatccaGgacaggctgagggagtcggg	17	11	0	1	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	TNXB-90	NM_019105	exon27	c.C9231T	p.S3077S	CATCCAGGACAGG	.	309	103	219	0	.	0	0	0	0	0	A	32017977	G	A	32017977	2	1	10	1	0	0	0	0	0	0	0	1	16383	987	35	3		3	TNXB	6	32017977	Silent	SNP	G	TCGA-OR-A5JB-01A-11D-A29I-10	2325968	32017977	139097090	136	2379										
HLA-DQA1	3117	broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr6	32610520	32610520	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	ctgcgttcagttggtgcttcCagacaccaagggccattgtg	12	11	1	1	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	HLA-DQA1-90	NM_002122	exon4	c.C747A	p.S249S	TGCTTCCAGACAC	.	341	140	179	1	.	57	57	0	0	0	A	32610520	C	A	32610520	2	1	10	1	0	0	0	0	0	0	0	1	7225	581	21	3		3	HLA-DQA1	6	32610520	Silent	SNP	C	TCGA-OR-A5JB-01A-11D-A29I-10	592543	32610520	138504547	137	2380										
UHRF1BP1	54887	broad.mit.edu;bcgsc.ca	37	chr6	34838842	34838842	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	ttggaggatgaggagatcccGgtggtagtccccatgcagat	15	8	0	3	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	UHRF1BP1-93	NM_017754	exon18	c.G3930A	p.P1310P	GATCCCGGTGGTA	.	107	45	83	1	.	1	1	0	0	0	A	34838842	G	A	34838842	2	1	10	1	0	0	0	0	0	0	0	1	17006	1103	39	1		1	UHRF1BP1	6	34838842	Silent	SNP	G	TCGA-OR-A5JB-01A-11D-A29I-10	2228322	34838842	136276225	138	2381										
KCTD20	222658	bcgsc.ca	37	chr6	36446975	36446975	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	tgagattgctgaaggcatcaGtgcaactgtatttcgcacag	11	8	1	2	rs2239808	byfrequency	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	KCTD20-92	NM_173562	exon4	c.G512C	p.S171T	GCATCAGTGCAAC	.	281	7	182	0	G|0.619;C|0.381	5	5	0	0	0	C	36446975	G	C	36446975	3	2	10	1	0	0	0	0	1	0	0	0	8129	1029	36	3	522	3	KCTD20	6	36446975	Missense_Mutation	SNP	G	TCGA-OR-A5JB-01A-11D-A29I-10	1608133	36446975	134668092	139	2382										
GUCA1B	2979	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	42156332	42156332	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	acactaacctccacaatgttGagtagctccaggcggtcgat	9	12	0	1	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	GUCA1B-92	NM_002098	exon2	c.C345G	p.L115L	AATGTTGAGTAGC	.	117	43	79	1	.	0	0	0	0	0	C	42156332	G	C	42156332	2	2	10	1	0	0	0	0	0	0	0	1	6910	1277	45	3		3	GUCA1B	6	42156332	Silent	SNP	G	TCGA-OR-A5JB-01A-11D-A29I-10	5709357	42156332	128958735	140	2383										
PEX6	5190	hgsc.bcm.edu	37	chr6	42946490	42946490	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	tccagcacccgcggtccgggCactgggagggtctctccgcg	15	16	1	0	rs9462858	byfrequency	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	PEX6-91	NM_000287	exon1	c.G399T	p.V133V	TCCGGGCACTGGG	.	10	9	0	0	C|0.673;A|0.327	4	0	4	0	0	A	42946490	C	A	42946490	2	1	10	1	0	0	0	0	0	0	0	1	11779	697	25	3		3	PEX6	6	42946490	Silent	SNP	C	TCGA-OR-A5JB-01A-11D-A29I-10	790158	42946490	128168577	141	2384										
SLC25A27	9481	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	46623682	46623682	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	agaatctgccccctatagggGaatggtgcgcacagctctag	12	11	2	1	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	SLC25A27-90	NM_001204051	exon2	c.G209A	p.G70E	ATAGGGGAATGGT	.	156	72	100	0	.	0	0	0	0	0	A	46623682	G	A	46623682	3	1	10	1	0	0	0	0	1	0	0	0	14525	1174	41	3	215	3	SLC25A27	6	46623682	Missense_Mutation	SNP	G	TCGA-OR-A5JB-01A-11D-A29I-10	3677192	46623682	124491385	142	2385										
CRISP1	167	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	49806196	49806196	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	gggcaggcttcacatgggacGcctgtcttataaggttcatt	12	9	3	0	rs35289289	byfrequency	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	CRISP1-90	NM_001205220	exon7	c.C576T	p.G192G	TGGGACGCCTGTC	.	58	24	43	0	G|0.960;A|0.040	0	0	0	0	0	A	49806196	G	A	49806196	2	1	10	1	0	0	0	0	0	0	0	1	3885	1074	38	1		1	CRISP1	6	49806196	Silent	SNP	G	TCGA-OR-A5JB-01A-11D-A29I-10	3182514	49806196	121308871	143	2386										
PKHD1	5314	bcgsc.ca	37	chr6	51512887	51512887	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	gaaattgtccatggctctgaAggaggtcccagggactctac	12	10	2	1	rs17667728	byfrequency	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	PKHD1-603	NM_138694	exon63	c.T11340C	p.P3780P	CTCTGAAGGAGGT	.	97	4	59	0	A|0.960;G|0.040	0	0	0	0	0	G	51512887	A	G	51512887	2	3	10	1	0	0	0	0	0	0	0	1	12000	59	3	4		4	PKHD1	6	51512887	Silent	SNP	A	TCGA-OR-A5JB-01A-11D-A29I-10	1706691	51512887	119602180	144	2387										
PKHD1	5314	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	51920477	51920477	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	gaggctgaacctgccacagaAgggctccgtcccactggtga	13	13	0	3	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	PKHD1-603	NM_170724	exon19	c.T1744C	p.F582L	CACAGAAGGGCTC	.	139	49	63	0	.	0	0	0	0	0	G	51920477	A	G	51920477	3	3	10	1	0	0	0	0	1	0	0	0	12000	72	3	4	10715	4	PKHD1	6	51920477	Missense_Mutation	SNP	A	TCGA-OR-A5JB-01A-11D-A29I-10	407590	51920477	119194590	145	2388										
IL17A	3605	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	52052591	52052591	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	ctacaaccgatccacctcacCttggaatctccagtacgtaa	5	15	2	0	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	IL17A-90	NM_002190	exon2	c.C218T	p.P73L	CCTCACCTTGGAA	.	161	44	102	0	.	0	0	0	0	0	T	52052591	C	T	52052591	3	4	10	1	0	0	0	0	1	0	0	0	7655	681	24	3	224	3	IL17A	6	52052591	Missense_Mutation	SNP	C	TCGA-OR-A5JB-01A-11D-A29I-10	132114	52052591	119062476	146	2389										
DST	667	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	56336950	56336950	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	ttgctcaccagtaagtttacCctaggatttttggtttcaat	7	8	2	0	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	DST-523	NM_015548	exon75	c.G14196T	p.R4732S	GTTTACCCTAGGA	.	235	84	138	0	.	32	11	21	0	0	A	56336950	C	A	56336950	3	1	10	1	0	0	0	0	1	0	0	0	4794	622	22	3	1359	3	DST	6	56336950	Missense_Mutation	SNP	C	TCGA-OR-A5JB-01A-11D-A29I-10	4284359	56336950	114778117	147	2390										
POU3F2	5454	hgsc.bcm.edu	37	chr6	99283376	99283376	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	gccggcgggcagccggccggTctgcaccaccacggcctgcg	16	18	1	0	rs195860		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	POU3F2-90	NM_005604	exon1	c.T627G	p.G209G	GGCCGGTCTGCAC	.	7	7	0	0	T|0.089;G|0.911	0	0	0	0	0	G	99283376	T	G	99283376	2	3	10	1	0	0	0	0	0	0	0	1	12304	1654	58	5		5	POU3F2	6	99283376	Silent	SNP	T	TCGA-OR-A5JB-01A-11D-A29I-10	42946426	99283376	71831691	148	2391										
KPNA5	3841	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	117013269	117013269	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	gaaatgatgaatctatgcttGaaagtcctatacaggatcca	8	7	1	3	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	KPNA5-290	NM_002269	exon3	c.G190C	p.E64Q	ATGCTTGAAAGTC	.	76	42	148	0	.	2	0	2	0	0	C	117013269	G	C	117013269	3	2	10	1	0	0	0	0	1	0	0	0	8454	1291	45	3	200	3	KPNA5	6	117013269	Missense_Mutation	SNP	G	TCGA-OR-A5JB-01A-11D-A29I-10	17729893	117013269	54101798	149	2392										
SYNE1	23345	broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr6	152763327	152763327	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	ccttctccctgctgcgcctgCgcgatctgctgctgcacatc	9	18	2	0	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	SYNE1-607	NM_033071	exon31	c.G3912T	p.A1304A	CGCCTGCGCGATC	.	57	39	43	1	.	0	0	0	0	0	A	152763327	C	A	152763327	2	1	10	1	0	0	0	0	0	0	0	1	15482	755	27	2		2	SYNE1	6	152763327	Silent	SNP	C	TCGA-OR-A5JB-01A-11D-A29I-10	35750058	152763327	18351740	150	2393										
WTAP	9589	ucsc.edu;bcgsc.ca	37	chr6	160169397	160169397	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	gtgcctggaagtttacgcctGataggtaaacaaatcatact	9	8	1	1	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	WTAP-90	NM_001270533	exon6	c.G448A	p.D150N	ACGCCTGATAGGT	.	176	88	236	3	.	13	5	8	0	0	A	160169397	G	A	160169397	3	1	10	1	0	0	0	0	1	0	0	0	17447	1290	45	3	466	3	WTAP	6	160169397	Missense_Mutation	SNP	G	TCGA-OR-A5JB-01A-11D-A29I-10	7406070	160169397	10945670	151	2394										
RPS6KA2	6196	bcgsc.ca	37	chr6	166862233	166862233	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	ttcacggcatactcggtgtcTgtggctttatgcacacatcg	10	11	2	0	rs2230730	byfrequency	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	RPS6KA2-1405	NM_001006932	exon15	c.A1335G	p.T445T	GGTGTCTGTGGCT	.	167	6	122	1	T|0.761;C|0.239;A|0.000	0	0	0	0	0	C	166862233	T	C	166862233	2	2	10	1	0	0	0	0	0	0	0	1	13686	1567	55	4		4	RPS6KA2	6	166862233	Silent	SNP	T	TCGA-OR-A5JB-01A-11D-A29I-10	6692836	166862233	4252834	152	2395										
PMS2	5395	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr7	6022454	6022454	+	Splice_Site	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	atgaacactaaacacactcaCgctatgagcctctgcccctg	6	15	2	2	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	PMS2-1083	NM_000535	exon13	c.2174+1G>A	.	CACTCACGCTATG	.	624	157	506	1	.	1	0	1	0	0	T	6022454	C	T	6022454	5	4	10	1	0	0	0	0	0	0	1	0	12172	550	19	1	429	1	PMS2	7	6022454	Splice_Site	SNP	C	TCGA-OR-A5JB-01A-11D-A29I-10		6022454	153116209	153	2396										
ETV1	2115	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr7	13971174	13971174	+	Frame_Shift_Del	DEL	G	G	-													0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	cctgtttaatcatcagaggaGggggaaagctttggctggcc					novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	ETV1-659	NM_004956	exon9	c.755delC	p.P252fs	AGAGGAGGGGGAA	.	176	58	149	0	.	0	0	0	0	0	-	13971174	G	-	13971174	7	5	10	1	0	1	0	1	0	0	0	0	5290	1000	35	0	702	0	ETV1	7	13971174	Frame_Shift_Del	DEL	G	TCGA-OR-A5JB-01A-11D-A29I-10	7948720	13971174	145167489	154	2397	19	3								
ETV1	2115	hgsc.bcm.edu	37	chr7	13971176	13971177	+	Frame_Shift_Del	DEL	GG	GG	-													0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	tgtttaatcatcagaggaggGggaaagctttggctggccgc					novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	GG	GG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	ETV1-659	NM_004956	exon9	c.752_753del	p.251_251del	AGGAGGGGGAAAG	.	178	0	150	0	.	0	0	0	0	0	-	13971177	GG	-	13971176	7	5	10	1	0	1	0	1	0	0	0	0	5290	1219	43	0	704	0	ETV1	7	13971176	Frame_Shift_Del	DEL	GG	TCGA-OR-A5JB-01A-11D-A29I-10	2	13971176	145167487	155	2398	19	3								
ETV1	2115	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	chr7	13971177	13971177	+	Missense_Mutation	SNP	G	G	A													0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	gtttaatcatcagaggagggGgaaagctttggctggccgca					novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	ETV1-659	NM_004956	exon9	c.C752T	p.P251L	GGAGGGGGAAAGC	.	178	59	149	0	.	0	0	0	0	0	A	13971177	G	A	13971177	3	1	10	1	0	0	0	0	1	0	0	0	5290	1232	43	3	705	3	ETV1	7	13971177	Missense_Mutation	SNP	G	TCGA-OR-A5JB-01A-11D-A29I-10	1	13971177	145167486	156	2399	19	3								
FERD3L	222894	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr7	19184760	19184760	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	gcgctcctcttcctcctcctCttctccgtccccctggtcca	5	22	3	0	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	FERD3L-153	NM_152898	exon1	c.G226T	p.E76X	CCTCCTCTTCTCC	.	65	22	73	0	.	0	0	0	0	0	A	19184760	C	A	19184760	4	1	10	1	0	0	0	0	0	1	0	0	5835	922	32	3	278	3	FERD3L	7	19184760	Nonsense_Mutation	SNP	C	TCGA-OR-A5JB-01A-11D-A29I-10	5213583	19184760	139953903	157	2400										
CDK13	8621	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	40085455	40085455	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	gtgcattttatctggtgtttGaatatatggaccatgatctg	10	5	2	2	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	CDK13-548	NM_003718	exon6	c.G2374A	p.E792K	GTGTTTGAATATA	.	53	21	47	0	.	9	5	4	0	0	A	40085455	G	A	40085455	3	1	10	1	0	0	0	0	1	0	0	0	3135	1291	45	3	2396	3	CDK13	7	40085455	Missense_Mutation	SNP	G	TCGA-OR-A5JB-01A-11D-A29I-10	20900695	40085455	119053208	158	2401										
SUN3	256979	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr7	48068434	48068434	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	ccattcgcatcaggattttcGtcctctgataacaaagcatt	6	11	2	1	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	SUN3-514	NM_152782	exon2	c.C102T	p.D34D	ATTTTCGTCCTCT	.	218	18	176	0	.	0	0	0	0	0	A	48068434	G	A	48068434	2	1	10	1	0	0	0	0	0	0	0	1	15430	1136	40	1		1	SUN3	7	48068434	Silent	SNP	G	TCGA-OR-A5JB-01A-11D-A29I-10	7982979	48068434	111070229	159	2402										
ABCA13	154664	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	48314045	48314045	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	aaggatgtaaacagtgtaggCaattccatttatcacttagc	8	7	1	0	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	ABCA13-521	NM_152701	exon17	c.C4782G	p.G1594G	TGTAGGCAATTCC	.	69	28	91	0	.	0	0	0	0	0	G	48314045	C	G	48314045	2	3	10	1	0	0	0	0	0	0	0	1	31	697	25	3		3	ABCA13	7	48314045	Silent	SNP	C	TCGA-OR-A5JB-01A-11D-A29I-10	245611	48314045	110824618	160	2403										
IKZF1	10320	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	50444361	50444361	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	aaaatgaatggctcccacagGgaccaaggcagctcggcttt	11	11	0	1	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	IKZF1-1242	NM_006060	exon4	c.G291T	p.R97S	CCACAGGGACCAA	.	197	80	143	0	.	0	0	0	0	0	T	50444361	G	T	50444361	3	4	10	1	0	0	0	0	1	0	0	0	7635	1223	43	3	301	3	IKZF1	7	50444361	Missense_Mutation	SNP	G	TCGA-OR-A5JB-01A-11D-A29I-10	2130316	50444361	108694302	161	2404										
PCLO	27445	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	82784132	82784132	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	ggtttgacactcagtgcatgTgttaaaattggccttttctg	10	7	2	1	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	PCLO-29	NM_014510	exon2	c.A1825T	p.T609S	TGCATGTGTTAAA	.	272	90	180	0	.	0	0	0	0	0	A	82784132	T	A	82784132	3	1	10	1	0	0	0	0	1	0	0	0	11612	1696	59	5	13716	5	PCLO	7	82784132	Missense_Mutation	SNP	T	TCGA-OR-A5JB-01A-11D-A29I-10	32339771	82784132	76354531	162	2405										
SEMA3D	223117	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr7	84685101	84685101	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	gccttcttgagatgattcacGaaagaagaaatatattttat	7	5	2	4	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	SEMA3D-138	NM_152754	exon7	c.C793A	p.R265S	ATTCACGAAAGAA	.	26	12	45	0	.	0	0	0	0	0	T	84685101	G	T	84685101	3	4	10	1	0	0	0	0	1	0	0	0	14062	1058	37	2	1584	2	SEMA3D	7	84685101	Missense_Mutation	SNP	G	TCGA-OR-A5JB-01A-11D-A29I-10	1900969	84685101	74453562	163	2406										
ABCB1	5243	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	87178755	87178755	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	ggatcttggggttgcgaaccAgggcacgtgcaatggcgatc	16	9	1	0	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	ABCB1-582	NM_000927	exon15	c.T1634A	p.L545Q	CGAACCAGGGCAC	.	191	51	123	0	.	0	0	0	0	0	T	87178755	A	T	87178755	3	4	10	1	0	0	0	0	1	0	0	0	40	188	7	5	2268	5	ABCB1	7	87178755	Missense_Mutation	SNP	A	TCGA-OR-A5JB-01A-11D-A29I-10	2493654	87178755	71959908	164	2407										
RUNDC3B	154661	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	87400049	87400049	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	agttaaacaaaagtatcagcTtaccctggaacagaaggtat	8	7	1	1	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	RUNDC3B-69	NM_138290	exon8	c.T833A	p.L278H	ATCAGCTTACCCT	.	155	68	123	0	.	0	0	0	0	0	A	87400049	T	A	87400049	3	1	10	1	0	0	0	0	1	0	0	0	13780	1609	56	5	863	5	RUNDC3B	7	87400049	Missense_Mutation	SNP	T	TCGA-OR-A5JB-01A-11D-A29I-10	221294	87400049	71738614	165	2408										
STEAP2	261729	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	89854425	89854425	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	aatctctatgatgggaagccCtaagagccttagtgaaactt	9	8	1	3	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	STEAP2-92	NM_001040665	exon3	c.C29T	p.P10L	GAAGCCCTAAGAG	.	172	54	121	0	.	2	2	0	0	0	T	89854425	C	T	89854425	3	4	10	1	0	0	0	0	1	0	0	0	15315	681	24	3	31	3	STEAP2	7	89854425	Missense_Mutation	SNP	C	TCGA-OR-A5JB-01A-11D-A29I-10	2454376	89854425	69284238	166	2409										
FOXP2	93986	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	114268677	114268677	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	ccttcagcaacaagtcctgtCtcctcagcagctacaagccc	6	17	3	0	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	FOXP2-295	NM_001172767	exon4	c.C416A	p.S139Y	TCCTGTCTCCTCA	.	140	39	98	0	.	0	0	0	0	0	A	114268677	C	A	114268677	3	1	10	1	0	0	0	0	1	0	0	0	6046	913	32	3	430	3	FOXP2	7	114268677	Missense_Mutation	SNP	C	TCGA-OR-A5JB-01A-11D-A29I-10	24414252	114268677	44869986	167	2410										
CFTR	1080	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	117232327	117232327	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	aaaaggaagaattctattctCaatccaatcaactctatacg	4	9	4	1	rs1800102		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	CFTR-518	NM_000492	exon14	c.C2106G	p.L702L	TATTCTCAATCCA	.	16	6	30	0	.	0	0	0	0	0	G	117232327	C	G	117232327	2	3	10	1	0	0	0	0	0	0	0	1	3300	813	29	3		3	CFTR	7	117232327	Silent	SNP	C	TCGA-OR-A5JB-01A-11D-A29I-10	2963650	117232327	41906336	168	2411										
CTTNBP2	83992	hgsc.bcm.edu	37	chr7	117358169	117358169	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	ttaaatcatccctggaatcaGcaatctagaaaatacagaat	5	8	3	2	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	CTTNBP2-94	NM_033427	exon22	c.C4649A	p.A1550D	GAATCAGCAATCT	.	75	4	46	0	.	0	0	0	0	0	T	117358169	G	T	117358169	3	4	10	1	0	0	0	0	1	0	0	0	4051	971	34	3	350	3	CTTNBP2	7	117358169	Missense_Mutation	SNP	G	TCGA-OR-A5JB-01A-11D-A29I-10	125842	117358169	41780494	169	2412										
FEZF1	389549	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	121942939	121942939	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	tatgagtgtttaaagtggaaCttctattaaatgctttgcca	8	5	1	1	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	FEZF1-91	NM_001024613	exon3	c.G983T	p.S328I	GTGGAACTTCTAT	.	89	30	105	0	.	0	0	0	0	0	A	121942939	C	A	121942939	3	1	10	1	0	0	0	0	1	0	0	0	5844	565	20	3	452	3	FEZF1	7	121942939	Missense_Mutation	SNP	C	TCGA-OR-A5JB-01A-11D-A29I-10	4584770	121942939	37195724	170	2413										
SLC13A1	6561	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	122759235	122759235	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	aagatatcagaattattagcCatgctggtaatgaacccaga	8	7	1	4	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	SLC13A1-92	NM_022444	exon13	c.G1412T	p.W471L	ATTAGCCATGCTG	.	74	28	71	1	.	0	0	0	0	0	A	122759235	C	A	122759235	3	1	10	1	0	0	0	0	1	0	0	0	14426	595	21	3	387	3	SLC13A1	7	122759235	Missense_Mutation	SNP	C	TCGA-OR-A5JB-01A-11D-A29I-10	816296	122759235	36379428	171	2414										
POT1	25913	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	124503540	124503540	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	tatgagtagatgcccaaacaCgtaaggcttctaccattttg	8	9	1	2	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	POT1-227	NM_015450	exon8	c.G410T	p.R137L	CAAACACGTAAGG	.	267	96	191	0	.	1	0	1	0	0	A	124503540	C	A	124503540	3	1	10	1	0	0	0	0	1	0	0	0	12289	536	19	2	1542	2	POT1	7	124503540	Missense_Mutation	SNP	C	TCGA-OR-A5JB-01A-11D-A29I-10	1744305	124503540	34635123	172	2415										
BRAF	673	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	140453154	140453154	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	tcactgtagctagaccaaaaTcacctatttttactgtgagg	7	9	2	2	rs121913338	bycluster	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	BRAF-92146	NM_004333	exon15	c.A1781G	p.D594G	CCAAAATCACCTA	.	77	25	54	0	.	1	0	1	0	0	C	140453154	T	C	140453154	3	2	10	1	0	0	0	0	1	0	0	0	1499	1435	50	4	535	4	BRAF	7	140453154	Missense_Mutation	SNP	T	TCGA-OR-A5JB-01A-11D-A29I-10	15949614	140453154	18685509	173	2416										
CLEC5A	23601	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	141635690	141635690	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	ccctgctttcattccaagatGattcagaagtggataagaaa	8	8	2	4	rs117965702	alternate_allele	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	CLEC5A-90	NM_013252	exon5	c.C269T	p.S90L	CAAGATGATTCAG	.	76	27	60	0	G|0.998;T|0.002	0	0	0	0	0	A	141635690	G	A	141635690	3	1	10	1	0	0	0	0	1	0	0	0	3525	1294	45	3	309	3	CLEC5A	7	141635690	Missense_Mutation	SNP	G	TCGA-OR-A5JB-01A-11D-A29I-10	1182536	141635690	17502973	174	2417										
OR6V1	346517	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	142750104	142750104	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	atggctacatagtgaccactGtgctgcggatcccctctgcc	10	14	1	1	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	OR6V1-23	NM_001001667	exon1	c.G667C	p.V223L	ACCACTGTGCTGC	.	264	102	208	0	.	0	0	0	0	0	C	142750104	G	C	142750104	3	2	10	1	0	0	0	0	1	0	0	0	11240	1377	48	3	669	3	OR6V1	7	142750104	Missense_Mutation	SNP	G	TCGA-OR-A5JB-01A-11D-A29I-10	1114414	142750104	16388559	175	2418										
SSPO	23145	hgsc.bcm.edu;mdanderson.org	37	chr7	149518553	149518553	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	cccagagccagccctgccctCagccctcgtgcccacccctg	8	23	1	1	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	.	NM_198455	exon88	c.C12622T	p.Q4208X	TGCCCTCAGCCCT	.	56	22	9	0	.	0	0	0	0	0	T	149518553	C	T	149518553	4	4	10	1	0	0	0	0	0	1	0	0	15226	827	29	3	12966	3	SSPO	7	149518553	Nonsense_Mutation	SNP	C	TCGA-OR-A5JB-01A-11D-A29I-10	6768449	149518553	9620110	176	2419										
MFHAS1	9258	hgsc.bcm.edu	37	chr8	8750467	8750467	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	gggcaggccccggcggcggtAagcgtgagctggcgcaggtt	20	11	0	1	rs1062988		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	MFHAS1-90	NM_004225	exon1	c.T102C	p.L34L	GGCGGTAAGCGTG	.	7	6	0	0	A|0.857;G|0.143	0	0	0	0	0	G	8750467	A	G	8750467	2	3	10	1	0	0	0	0	0	0	0	1	9549	349	13	4		4	MFHAS1	8	8750467	Silent	SNP	A	TCGA-OR-A5JB-01A-11D-A29I-10		8750467	137613555	177	2420										
UNC5D	137970	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr8	35579843	35579843	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	cggagccagagtgactatggCgtggacgtcattgactcttc	13	10	2	3	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	UNC5D-96	NM_080872	exon9	c.C1233G	p.G411G	CTATGGCGTGGAC	.	207	120	166	0	.	0	0	0	0	0	G	35579843	C	G	35579843	2	3	10	1	0	0	0	0	0	0	0	1	17033	755	27	2		2	UNC5D	8	35579843	Silent	SNP	C	TCGA-OR-A5JB-01A-11D-A29I-10	26829376	35579843	110784179	178	2421										
PRKDC	5591	broad.mit.edu	37	chr8	48801138	48801138	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	aagctgtttacaggcagacaCaacagcagccagcctgctcc	9	14	0	1	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	PRKDC-1515	.	.	.	.	CAGACACAACAGC	.	160	4	244	1	.	1	1	0	0	0	A	48801138	C	A	48801138	3	1	10	1	0	0	0	0	1	0	0	0	12553	478	17	3	8244	3	PRKDC	8	48801138	Missense_Mutation	SNP	C	TCGA-OR-A5JB-01A-11D-A29I-10	13221295	48801138	97562884	179	2422										
PXDNL	137902	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	52321329	52321329	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	ggtccccggccaggaaacagGggctctcctgctcctgtcgc	13	16	1	0	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	PXDNL-70	NM_144651	exon17	c.C2855A	p.P952H	AAACAGGGGCTCT	.	144	82	111	1	.	0	0	0	0	0	T	52321329	G	T	52321329	3	4	10	1	0	0	0	0	1	0	0	0	12883	1232	43	3	1564	3	PXDNL	8	52321329	Missense_Mutation	SNP	G	TCGA-OR-A5JB-01A-11D-A29I-10	3520191	52321329	94042693	180	2423										
ST18	9705	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr8	53071652	53071652	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	tcgattaggaaatttcactgGatttggaaaatgctttgctg	10	5	1	0	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	ST18-95	NM_014682	exon15	c.C1612G	p.P538A	TCACTGGATTTGG	.	34	17	24	0	.	0	0	0	0	0	C	53071652	G	C	53071652	3	2	10	1	0	0	0	0	1	0	0	0	15249	1174	41	3	1579	3	ST18	8	53071652	Missense_Mutation	SNP	G	TCGA-OR-A5JB-01A-11D-A29I-10	750323	53071652	93292370	181	2424										
HEY1	23462	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	80677603	80677603	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	ggcgacagtttggaggcggaGgtgaccacagggagcaccgg	19	9	0	1	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	HEY1-658	NM_001040708	exon5	c.C747T	p.T249T	GGCGGAGGTGACC	.	283	30	115	0	.	3	3	0	0	0	A	80677603	G	A	80677603	2	1	10	1	0	0	0	0	0	0	0	1	7099	987	35	3		3	HEY1	8	80677603	Silent	SNP	G	TCGA-OR-A5JB-01A-11D-A29I-10	27605951	80677603	65686419	182	2425										
ZFPM2	23414	broad.mit.edu;bcgsc.ca	37	chr8	106813740	106813740	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	aaagtctgagccctctagccCaagacttgcctcatctccag	7	15	4	2	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	ZFPM2-139	NM_012082	exon8	c.C1430A	p.P477Q	CTAGCCCAAGACT	.	53	38	52	2	.	0	0	0	0	0	A	106813740	C	A	106813740	3	1	10	1	0	0	0	0	1	0	0	0	17695	594	21	3	1460	3	ZFPM2	8	106813740	Missense_Mutation	SNP	C	TCGA-OR-A5JB-01A-11D-A29I-10	26136137	106813740	39550282	183	2426										
CSMD3	114788	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr8	114449052	114449052	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	cccagggtttggattcctttGctcggctttcccctttgcgg	11	13	0	0	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	CSMD3-1132	NM_052900	exon1	c.C32A	p.A11E	TCCTTTGCTCGGC	.	44	32	43	0	.	0	0	0	0	0	T	114449052	G	T	114449052	3	4	10	1	0	0	0	0	1	0	0	0	3952	1319	46	3	11437	3	CSMD3	8	114449052	Missense_Mutation	SNP	G	TCGA-OR-A5JB-01A-11D-A29I-10	7635312	114449052	31914970	184	2427										
CYP11B2	1585	ucsc.edu	37	chr8	143994279	143994279	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	tgagctcaccactcgctccaAaaacagacccacagggtaga	8	14	1	3	rs61757295	byfrequency	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	CYP11B2-90	NM_000498	exon7	c.T1144C	p.L382L	GCTCCAAAAACAG	.	354	89	128	10	A|0.992;G|0.008	0	0	0	0	0	G	143994279	A	G	143994279	2	3	10	1	0	0	0	0	0	0	0	1	4152	11	1	4		4	CYP11B2	8	143994279	Silent	SNP	A	TCGA-OR-A5JB-01A-11D-A29I-10	29545227	143994279	2369743	185	2428										
ZNF696	79943	hgsc.bcm.edu	37	chr8	144378868	144378868	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	ggcttcttccggcaccagcgActccacacgggcgagaagcc	12	16	1	1	rs7386259	byfrequency	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	ZNF696-90	NM_030895	exon3	c.A1023G	p.R341R	CCAGCGACTCCAC	.	9	8	0	0	A|0.118;G|0.882	1	0	1	0	0	G	144378868	A	G	144378868	2	3	10	1	0	0	0	0	0	0	0	1	18136	262	10	4		4	ZNF696	8	144378868	Silent	SNP	A	TCGA-OR-A5JB-01A-11D-A29I-10	384589	144378868	1985154	186	2429										
LRRC24	441381	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr8	145747994	145747994	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	gagcggttgatgacgaacatCtcgtggccgcgctcgtcgcg	15	12	1	2	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	LRRC24-90	NM_001024678	exon5	c.G1407A	p.E469E	GAACATCTCGTGG	.	301	57	66	0	.	16	13	3	0	0	T	145747994	C	T	145747994	2	4	10	1	0	0	0	0	0	0	0	1	9006	912	32	3		3	LRRC24	8	145747994	Silent	SNP	C	TCGA-OR-A5JB-01A-11D-A29I-10	1369126	145747994	616028	187	2430										
ZNF517	340385	hgsc.bcm.edu	37	chr8	146033347	146033347	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	gggtgcccaggacggcggcgTggggcagggcgccctgctcg	21	13	0	0	rs2976653		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	ZNF517-90	NM_213605	exon5	c.T1046C	p.V349A	GCGGCGTGGGGCA	.	10	9	0	0	G|0.992;C|0.006	0	0	0	0	0	C	146033347	T	C	146033347	3	2	10	1	0	0	0	0	1	0	0	0	17998	1696	59	4	1060	4	ZNF517	8	146033347	Missense_Mutation	SNP	T	TCGA-OR-A5JB-01A-11D-A29I-10	285353	146033347	330675	188	2431										
SLC1A1	6505	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	4573909	4573909	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	gttgtgcttcctttccagttAtatgccactaggtattttgt	8	8	0	0	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	SLC1A1-514	NM_004170	exon8	c.A770T	p.Y257F	CCAGTTATATGCC	.	137	21	104	0	.	0	0	0	0	0	T	4573909	A	T	4573909	3	4	10	1	0	0	0	0	1	0	0	0	14466	449	16	5	800	5	SLC1A1	9	4573909	Missense_Mutation	SNP	A	TCGA-OR-A5JB-01A-11D-A29I-10		4573909	136639522	189	2432										
CNTLN	54875	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr9	17462995	17462995	+	Nonsense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	tagcaaaagaagaacacataAaggaaatgcatgaaaagtat	8	4	0	3	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	CNTLN-91	NM_017738	exon20	c.A3388T	p.K1130X	CACATAAAGGAAA	.	335	104	283	0	.	4	4	0	0	0	T	17462995	A	T	17462995	4	4	10	1	0	0	0	0	0	1	0	0	3645	15	1	5	3496	5	CNTLN	9	17462995	Nonsense_Mutation	SNP	A	TCGA-OR-A5JB-01A-11D-A29I-10	12889086	17462995	123750436	190	2433										
ADAMTSL1	92949	hgsc.bcm.edu	37	chr9	18776919	18776919	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	ccaagacggcggtggtgctgCgctgcccggcgcgcagggtc	18	14	0	1	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	ADAMTSL1-230	NM_001040272	exon19	c.C2692T	p.R898C	GTGCTGCGCTGCC	.	139	47	5	0	.	0	0	0	0	0	T	18776919	C	T	18776919	3	4	10	1	0	0	0	0	1	0	0	0	274	768	27	1	2770	1	ADAMTSL1	9	18776919	Missense_Mutation	SNP	C	TCGA-OR-A5JB-01A-11D-A29I-10	1313924	18776919	122436512	191	2434										
DENND4C	55667	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr9	19300261	19300261	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	tgctgctctttgttttacttGagagtaaaattctgctgcat	8	7	2	1	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	DENND4C-92	NM_017925	exon9	c.G1243T	p.E415X	TTACTTGAGAGTA	.	80	31	70	0	.	0	0	0	0	0	T	19300261	G	T	19300261	4	4	10	1	0	0	0	0	0	1	0	0	4446	1291	45	3	553	3	DENND4C	9	19300261	Nonsense_Mutation	SNP	G	TCGA-OR-A5JB-01A-11D-A29I-10	523342	19300261	121913170	192	2435										
ELAVL2	1993	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr9	23693475	23693476	+	Frame_Shift_Ins	INS	-	-	T													0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	cataagccatattgagcagaINSttgtccaacctgcaaaacac					novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	ELAVL2-516	NM_004432	exon6	c.723_724insA	p.N241fs	GAGCAGATTGTCC	.	122	42	107	0	.	0	0	0	0	0	T	23693476	-	T	23693475	7	5	10	1	0	1	1	0	0	0	0	0	5063	330	12	0	364	0	ELAVL2	9	23693475	Frame_Shift_Ins	INS	-	TCGA-OR-A5JB-01A-11D-A29I-10	4393214	23693475	117519956	193	2436										
ELAVL2	1993	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	23701604	23701604	+	Splice_Site	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	cctacaccccttgatatgccTatggtagatttgagtaaaga	8	9	0	4	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	ELAVL2-516	NM_004432	exon6	c.488-2A>T	.	TATGCCTATGGTA	.	99	41	103	1	.	0	0	0	0	0	A	23701604	T	A	23701604	5	1	10	1	0	0	0	0	0	0	1	0	5063	1536	53	5	605	5	ELAVL2	9	23701604	Splice_Site	SNP	T	TCGA-OR-A5JB-01A-11D-A29I-10	8129	23701604	117511827	194	2437										
UNC13B	10497	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr9	35366986	35366986	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	ctctgcctcagtggctcccgGaagggtaagtaattcactgc	11	12	3	0	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	UNC13B-157	NM_006377	exon11	c.G1210A	p.E404K	CTCCCGGAAGGGT	.	80	18	60	0	.	0	0	0	0	0	A	35366986	G	A	35366986	3	1	10	1	0	0	0	0	1	0	0	0	17023	1175	41	3	1252	3	UNC13B	9	35366986	Missense_Mutation	SNP	G	TCGA-OR-A5JB-01A-11D-A29I-10	11665382	35366986	105846445	195	2438										
TPM2	7169	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr9	35684309	35684309	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	ggcaaactctgctcgggtctCagcctgggggtaaaggcagg	16	10	2	0	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	TPM2-515	NM_213674	exon8	c.G706A	p.E236K	GGGTCTCAGCCTG	.	116	35	98	0	.	0	0	0	0	0	T	35684309	C	T	35684309	3	4	10	1	0	0	0	0	1	0	0	0	16444	835	29	3	243	3	TPM2	9	35684309	Missense_Mutation	SNP	C	TCGA-OR-A5JB-01A-11D-A29I-10	317323	35684309	105529122	196	2439										
FRMPD1	22844	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr9	37733737	37733737	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	ctctattaagcaacttatttCtgctgcccagctacgtttaa	5	11	2	0	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	FRMPD1-159	NM_014907	exon12	c.C1133T	p.S378F	TTATTTCTGCTGC	.	27	11	34	0	.	0	0	0	0	0	T	37733737	C	T	37733737	3	4	10	1	0	0	0	0	1	0	0	0	6076	913	32	3	1175	3	FRMPD1	9	37733737	Missense_Mutation	SNP	C	TCGA-OR-A5JB-01A-11D-A29I-10	2049428	37733737	103479694	197	2440										
APBA1	320	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	chr9	72132096	72132096	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	tgccgcctcgtcggtcacctCcacctccgcagacccctcca	7	22	1	1	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	APBA1-91	NM_001163	exon2	c.G31C	p.E11Q	TCACCTCCACCTC	.	41	16	10	0	.	0	0	0	0	0	G	72132096	C	G	72132096	3	3	10	1	0	0	0	0	1	0	0	0	756	864	30	3	2530	3	APBA1	9	72132096	Missense_Mutation	SNP	C	TCGA-OR-A5JB-01A-11D-A29I-10	34398359	72132096	69081335	198	2441										
MURC	347273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr9	103348271	103348271	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	gaaaacatgcagaagacacgGcagaatcttgacaagaaagt	10	7	1	5	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	MURC-69	NM_001018116	exon2	c.G633A	p.R211R	GACACGGCAGAAT	.	128	26	94	0	.	0	0	0	0	0	A	103348271	G	A	103348271	2	1	10	1	0	0	0	0	0	0	0	1	10015	1190	42	3		3	MURC	9	103348271	Silent	SNP	G	TCGA-OR-A5JB-01A-11D-A29I-10	31216175	103348271	37865160	199	2442										
OR13C3	138803	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr9	107298061	107298061	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	cctggtttcattagtgaattGgttttttgttcagcaaatat	8	5	2	1	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	OR13C3-69	NM_001001961	exon1	c.C1034A	p.P345Q	TGAATTGGTTTTT	.	103	29	83	0	.	0	0	0	0	0	T	107298061	G	T	107298061	3	4	10	1	0	0	0	0	1	0	0	0	10964	1348	47	3	13	3	OR13C3	9	107298061	Missense_Mutation	SNP	G	TCGA-OR-A5JB-01A-11D-A29I-10	3949790	107298061	33915370	200	2443										
OR13D1	286365	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr9	107457687	107457687	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	atagcctcaggaataaagagGtcaaagaggctgtaaagaaa	11	5	2	3	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	OR13D1-70	NM_001004484	exon1	c.G985T	p.V329F	AAAGAGGTCAAAG	.	71	20	43	0	.	0	0	0	0	0	T	107457687	G	T	107457687	3	4	10	1	0	0	0	0	1	0	0	0	10969	1261	44	3	987	3	OR13D1	9	107457687	Missense_Mutation	SNP	G	TCGA-OR-A5JB-01A-11D-A29I-10	159626	107457687	33755744	201	2444										
IKBKAP	8518	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr9	111679945	111679945	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	tagatgcaatcaaactgcctGagggtcttaaagcaaactca	8	9	3	2	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	IKBKAP-318	NM_003640	exon9	c.C746T	p.S249L	CTGCCTGAGGGTC	.	92	46	88	0	.	0	0	0	0	0	A	111679945	G	A	111679945	3	1	10	1	0	0	0	0	1	0	0	0	7631	1294	45	3	3368	3	IKBKAP	9	111679945	Missense_Mutation	SNP	G	TCGA-OR-A5JB-01A-11D-A29I-10	4222258	111679945	29533486	202	2445										
AKAP2	11217	hgsc.bcm.edu	37	chr9	112811038	112811038	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	cccggagtctcctggaccccCggagtctcctggacccccgg	12	19	2	0	rs78923754	byfrequency	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	AKAP2-24	NM_001004065	exon1	c.C59T	p.P20L	GACCCCCGGAGTC	.	9	7	0	0	C|0.917;T|0.083	0	0	0	0	0	T	112811038	C	T	112811038	3	4	10	1	0	0	0	0	1	0	0	0	451	652	23	1	61	1	AKAP2	9	112811038	Missense_Mutation	SNP	C	TCGA-OR-A5JB-01A-11D-A29I-10	1131093	112811038	28402393	203	2446										
KIAA1958	158405	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr9	115336645	115336645	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	ggggtgccctctgagacacaGactagccctgttgaaaggta	13	10	1	3	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	KIAA1958-91	NM_133465	exon2	c.G285A	p.Q95Q	GACACAGACTAGC	.	176	67	141	0	.	0	0	0	0	0	A	115336645	G	A	115336645	2	1	10	1	0	0	0	0	0	0	0	1	8285	933	33	3		3	KIAA1958	9	115336645	Silent	SNP	G	TCGA-OR-A5JB-01A-11D-A29I-10	2525607	115336645	25876786	204	2447										
TLR4	7099	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr9	120475158	120475158	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	aacttgtattcaaggtctggCtggtttagaagtccatcgtt	10	7	2	1	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	TLR4-577	NM_138554	exon3	c.C752A	p.A251D	GTCTGGCTGGTTT	.	28	13	35	0	.	0	0	0	0	0	A	120475158	C	A	120475158	3	1	10	1	0	0	0	0	1	0	0	0	15990	797	28	3	762	3	TLR4	9	120475158	Missense_Mutation	SNP	C	TCGA-OR-A5JB-01A-11D-A29I-10	5138513	120475158	20738273	205	2448										
LHX6	26468	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	124979518	124979518	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	gcgagctctccgcacccagtCgctggcgtagatctgtcggc	13	15	2	1	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	LHX6-90	NM_014368	exon5	c.G511T	p.D171Y	CCCAGTCGCTGGC	.	163	19	51	0	.	0	0	0	0	0	A	124979518	C	A	124979518	3	1	10	1	0	0	0	0	1	0	0	0	8798	884	31	2	750	2	LHX6	9	124979518	Missense_Mutation	SNP	C	TCGA-OR-A5JB-01A-11D-A29I-10	4504360	124979518	16233913	206	2449										
OR1J4	26219	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	125281773	125281773	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	aatttccttctcacttcaatGgcatacgatcggtatgtggc	8	10	2	0	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	OR1J4-90	NM_001004452	exon1	c.G354T	p.M118I	TTCAATGGCATAC	.	161	63	125	1	.	0	0	0	0	0	T	125281773	G	T	125281773	3	4	10	1	0	0	0	0	1	0	0	0	10990	1348	47	3	356	3	OR1J4	9	125281773	Missense_Mutation	SNP	G	TCGA-OR-A5JB-01A-11D-A29I-10	302255	125281773	15931658	207	2450										
RC3H2	54542	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr9	125645584	125645584	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	tctctgcacaacaaaaagtaCcagaactttccttgagaggg	8	10	1	2	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	RC3H2-523	NM_018835	exon5	c.G658T	p.V220L	AAAGTACCAGAAC	.	138	49	132	0	.	2	0	2	0	0	A	125645584	C	A	125645584	3	1	10	1	0	0	0	0	1	0	0	0	13202	507	18	3	3063	3	RC3H2	9	125645584	Missense_Mutation	SNP	C	TCGA-OR-A5JB-01A-11D-A29I-10	363811	125645584	15567847	208	2451										
DENND1A	57706	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr9	126439003	126439003	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	ttaaaaaggtaaatacctgtCtttttgtcgtgtaatctgcc	7	7	2	0	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	DENND1A-92	NM_024820	exon6	c.G368C	p.R123T	ACCTGTCTTTTTG	.	36	16	33	0	.	0	0	0	0	0	G	126439003	C	G	126439003	3	3	10	1	0	0	0	0	1	0	0	0	4437	913	32	3	2836	3	DENND1A	9	126439003	Missense_Mutation	SNP	C	TCGA-OR-A5JB-01A-11D-A29I-10	793419	126439003	14774428	209	2452										
PTGDS	5730	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr9	139874677	139874677	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	tgagttaaaggagaaattcaCcgccttctgcaaggcccagg	11	10	2	2	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	PTGDS-91	NM_000954	exon5	c.C491A	p.T164N	AATTCACCGCCTT	.	157	48	122	0	.	2	2	0	0	0	A	139874677	C	A	139874677	3	1	10	1	0	0	0	0	1	0	0	0	12774	507	18	3	509	3	PTGDS	9	139874677	Missense_Mutation	SNP	C	TCGA-OR-A5JB-01A-11D-A29I-10	13435674	139874677	1338754	210	2453										
FBXO18	84893	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr10	5979171	5979172	+	Frame_Shift_Del	DEL	GC	GC	-													0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	acagcctccccggagcaggtGcgcgccatggagcgcactgt					novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	GC	GC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	FBXO18-228	NM_032807	exon22	c.3213_3214del	p.1071_1072del	GCAGGTGCGCGCC	.	239	76	181	0	.	0	0	0	0	0	-	5979172	GC	-	5979171	7	5	10	1	0	1	0	1	0	0	0	0	5750	1306	46	0	3304	0	FBXO18	10	5979171	Frame_Shift_Del	DEL	GC	TCGA-OR-A5JB-01A-11D-A29I-10		5979171	129555576	211	2454										
FAM171A1	221061	broad.mit.edu	37	chr10	15326029	15326029	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	aggctatggaggcctggttgGtgaagatctcgatgagcgca	16	7	1	3	rs76275809	alternate_allele	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	FAM171A1-138	NM_001010924	exon2	c.C173A	p.T58N	TGGTTGGTGAAGA	.	114	3	78	0	G|0.500;C|0.500	0	0	0	0	0	T	15326029	G	T	15326029	3	4	10	1	0	0	0	0	1	0	0	0	5506	1261	44	3	2527	3	FAM171A1	10	15326029	Missense_Mutation	SNP	G	TCGA-OR-A5JB-01A-11D-A29I-10	9346858	15326029	120208718	212	2455										
ITGA8	8516	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr10	15761654	15761654	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	agcttttccacgtccaggttGaacgcctgacaggcggggga	14	11	0	2	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	ITGA8-230	NM_003638	exon1	c.C117T	p.F39F	CAGGTTGAACGCC	.	44	14	16	0	.	0	0	0	0	0	A	15761654	G	A	15761654	2	1	10	1	0	0	0	0	0	0	0	1	7903	1281	45	3		3	ITGA8	10	15761654	Silent	SNP	G	TCGA-OR-A5JB-01A-11D-A29I-10	435625	15761654	119773093	213	2456										
ANK3	288	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	61847904	61847904	+	Splice_Site	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	acaactttttgtgaacattaCctggaggcccactcgaattc	7	11	0	1	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	ANK3-107	NM_001149	exon8	c.942+1G>T	.	ACATTACCTGGAG	.	58	24	47	0	.	0	0	0	0	0	A	61847904	C	A	61847904	5	1	10	1	0	0	0	0	0	0	1	0	622	521	18	3	9965	3	ANK3	10	61847904	Splice_Site	SNP	C	TCGA-OR-A5JB-01A-11D-A29I-10	46086250	61847904	73686843	214	2457										
HKDC1	80201	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr10	71018532	71018532	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	tccttcacaattccttctagGaacaggcagcaacatgtgct	7	12	2	0	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	HKDC1-95	NM_025130	exon15	c.G2033A	p.G678E	TTCTAGGAACAGG	.	99	30	79	0	.	0	0	0	0	0	A	71018532	G	A	71018532	3	1	10	1	0	0	0	0	1	0	0	0	7214	1188	41	3	2091	3	HKDC1	10	71018532	Missense_Mutation	SNP	G	TCGA-OR-A5JB-01A-11D-A29I-10	9170628	71018532	64516215	215	2458										
NRG3	10718	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr10	84733611	84733611	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	ggagtcaagttttgtcggccCccagtcattccctgaggtcc	11	13	2	1	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	NRG3-522	NM_001010848	exon7	c.C1352A	p.P451H	TCGGCCCCCAGTC	.	298	129	159	1	.	0	0	0	0	0	A	84733611	C	A	84733611	3	1	10	1	0	0	0	0	1	0	0	0	10678	623	22	3	1546	3	NRG3	10	84733611	Missense_Mutation	SNP	C	TCGA-OR-A5JB-01A-11D-A29I-10	13715079	84733611	50801136	216	2459										
LRIT2	340745	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr10	85982398	85982398	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	ggcagcaggtatggccagctCtgacagagcagtgtcttctc	13	11	3	2	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	LRIT2-92	NM_001017924	exon3	c.G931T	p.E311X	CCAGCTCTGACAG	.	364	137	247	0	.	0	0	0	0	0	A	85982398	C	A	85982398	4	1	10	1	0	0	0	0	0	1	0	0	8975	922	32	3	725	3	LRIT2	10	85982398	Nonsense_Mutation	SNP	C	TCGA-OR-A5JB-01A-11D-A29I-10	1248787	85982398	49552349	217	2460										
PLCE1	51196	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr10	96084321	96084321	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	cttaagctaaaggagcaggtGcaggtaaagtttaaagttat	11	4	0	0	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	PLCE1-229	NM_016341	exon31	c.G6717A	p.V2239V	GCAGGTGCAGGTA	.	90	33	72	0	.	0	0	0	0	0	A	96084321	G	A	96084321	2	1	10	1	0	0	0	0	0	0	0	1	12063	1306	46	3		3	PLCE1	10	96084321	Silent	SNP	G	TCGA-OR-A5JB-01A-11D-A29I-10	10101923	96084321	39450426	218	2461										
HSPA12A	259217	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr10	118451896	118451896	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	gtctcatgaactgcttggccGgctgcttccagatggcaggc	13	12	1	2	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	HSPA12A-206	NM_025015	exon6	c.C629G	p.P210R	TTGGCCGGCTGCT	.	141	57	75	0	.	1	1	0	0	0	C	118451896	G	C	118451896	3	2	10	1	0	0	0	0	1	0	0	0	7425	1116	39	2	1426	2	HSPA12A	10	118451896	Missense_Mutation	SNP	G	TCGA-OR-A5JB-01A-11D-A29I-10	22367575	118451896	17082851	219	2462										
C10orf120	399814	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr10	124457937	124457937	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	actgtagttccttgagcattCtgcattcttcctcttgcttg	7	11	3	1	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	C10orf120-91	NM_001010912	exon3	c.G320C	p.R107T	AGCATTCTGCATT	.	184	68	106	0	.	0	0	0	0	0	G	124457937	C	G	124457937	3	3	10	1	0	0	0	0	1	0	0	0	1594	913	32	3	691	3	C10orf120	10	124457937	Missense_Mutation	SNP	C	TCGA-OR-A5JB-01A-11D-A29I-10	6006041	124457937	11076810	220	2463										
MKI67	4288	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr10	129903549	129903549	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	tctaggggttgggcttttccCttaggagttcttggctgcct	13	9	2	0	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	MKI67-519	NM_002417	exon13	c.G6555A	p.K2185K	TTTTCCCTTAGGA	.	164	52	167	1	.	8	2	6	0	0	T	129903549	C	T	129903549	2	4	10	1	0	0	0	0	0	0	0	1	9626	680	24	3		3	MKI67	10	129903549	Silent	SNP	C	TCGA-OR-A5JB-01A-11D-A29I-10	5445612	129903549	5631198	221	2464										
ZNF511	118472	hgsc.bcm.edu	37	chr10	135122507	135122507	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	gggcccggggcggcggagccGctgcctgtagagcgggatcc	20	13	0	1	rs3008357		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	ZNF511-90	NM_145806	exon1	c.G60A	p.P20P	GGAGCCGCTGCCT	.	9	6	1	0	G|0.816;A|0.184	1	1	0	0	0	A	135122507	G	A	135122507	2	1	10	1	0	0	0	0	0	0	0	1	17992	1074	38	1		1	ZNF511	10	135122507	Silent	SNP	G	TCGA-OR-A5JB-01A-11D-A29I-10	5218958	135122507	412240	222	2465										
ECHS1	1892	hgsc.bcm.edu	37	chr10	135186834	135186834	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	cagcaggacacgcagggcggCcatggctctctggactcctc	13	15	1	0	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	ECHS1-90	NM_004092	exon1	c.G4T	p.A2S	GGGCGGCCATGGC	.	41	28	0	0	.	19	4	15	0	0	A	135186834	C	A	135186834	3	1	10	1	0	0	0	0	1	0	0	0	4907	739	26	3	900	3	ECHS1	10	135186834	Missense_Mutation	SNP	C	TCGA-OR-A5JB-01A-11D-A29I-10	64327	135186834	347913	223	2466										
MUC2	4583	bcgsc.ca	37	chr11	1093022	1093022	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	acccatcaccaccaccactaCggtgaccccaaccccaacac	3	22	1	1	rs200733547		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	MUC2-90	NM_002457	exon30	c.C4841T	p.T1614M	CCACTACGGTGAC	.	165	22	106	2	.	0	0	0	0	0	T	1093022	C	T	1093022	3	4	10	1	0	0	0	0	1	0	0	0	10003	536	19	1	4959	1	MUC2	11	1093022	Missense_Mutation	SNP	C	TCGA-OR-A5JB-01A-11D-A29I-10		1093022	133913494	224	2467			1	4		4	4	278	N	G_CC_C	9.761258e-09
MUC2	4583	bcgsc.ca	37	chr11	1093104	1093105	+	Missense_Mutation	DNP	CC	CC	AG													0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	accactacggtgaccccaacCccaacacccaccggcacaca					novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	CC	CC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	MUC2-90	NM_002457	exon30	c.C4924G	p.P1642A	CCAACCCCAACAC	.	176	0	105	0	.	0	0	0	0	0	AG	1093105	CC	AG	1093104	3	1	10	1	0	0	0	0	1	0	0	0	10003	610	22	3	5041	3	MUC2	11	1093104	Missense_Mutation	DNP	CC	TCGA-OR-A5JB-01A-11D-A29I-10	82	1093104	133913412	225	2468			1	4		4	4	278	N	G_CC_C	9.761258e-09
MUC2	4583	bcgsc.ca	37	chr11	1093254	1093254	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	accccaaccccaacacccacCggcacacagaccccaacatc	3	23	0	1	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	MUC2-90	NM_002457	exon30	c.C5073T	p.T1691T	ACCCACCGGCACA	.	149	12	86	4	.	0	0	0	0	0	T	1093254	C	T	1093254	2	4	10	1	0	0	0	0	0	0	0	1	10003	639	23	1		1	MUC2	11	1093254	Silent	SNP	C	TCGA-OR-A5JB-01A-11D-A29I-10	150	1093254	133913262	226	2469			1	4		4	4	278	N	G_CC_C	9.761258e-09
MUC2	4583	broad.mit.edu	37	chr11	1093299	1093299	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	cccatcaccaccaccactacGgtgaccccaaccccaacacc	3	23	1	1	rs113492997	alternate_allele	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	MUC2-90	NM_002457	exon30	c.G5118A	p.T1706T	CACTACGGTGACC	.	163	6	118	0	.	0	0	0	0	0	A	1093299	G	A	1093299	2	1	10	1	0	0	0	0	0	0	0	1	10003	1103	39	1		1	MUC2	11	1093299	Silent	SNP	G	TCGA-OR-A5JB-01A-11D-A29I-10	45	1093299	133913217	227	2470			1	4		4	4	278	N	G_CC_C	9.761258e-09
MUC5B	727897	hgsc.bcm.edu;bcgsc.ca	37	chr11	1253980	1253980	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	caagggcgtacagctcagcgActggagggacggcgtctgca	16	11	2	0	rs202127660		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	.	NM_002458	exon17	c.A2045G	p.D682G	TCAGCGACTGGAG	.	128	16	31	0	.	0	0	0	0	0	G	1253980	A	G	1253980	3	3	10	1	0	0	0	0	1	0	0	0	10007	275	10	4	2120	4	MUC5B	11	1253980	Missense_Mutation	SNP	A	TCGA-OR-A5JB-01A-11D-A29I-10	160681	1253980	133752536	228	2471										
BRSK2	9024	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	1472024	1472024	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	tccaccgccggaaactgcaaGgtgagtgtctgcccggaggc	14	13	1	1	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	BRSK2-333	NM_001256630	exon14	c.G1633T	p.V545F	CTGCAAGGTGAGT	.	361	155	186	1	.	0	0	0	0	0	T	1472024	G	T	1472024	3	4	10	1	0	0	0	0	1	0	0	0	1527	1014	35	3	1549	3	BRSK2	11	1472024	Missense_Mutation	SNP	G	TCGA-OR-A5JB-01A-11D-A29I-10	218044	1472024	133534492	229	2472										
NUP98	4928	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	3752722	3752722	+	Silent	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	gtttgtaaagcctttggccgGactctagtggcagggcgggg	17	8	1	0	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	NUP98-703	NM_005387	exon14	c.C1680A	p.V560V	TGGCCGGACTCTA	.	133	56	108	0	.	2	1	1	0	0	T	3752722	G	T	3752722	2	4	10	1	0	0	0	0	0	0	0	1	10802	1161	41	3		3	NUP98	11	3752722	Silent	SNP	G	TCGA-OR-A5JB-01A-11D-A29I-10	2280698	3752722	131253794	230	2473										
OR51E1	143503	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	4674519	4674519	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	gtgctgtgttcatattctatGtacctttcattggattgtcc	8	8	3	0	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	OR51E1-114	NM_152430	exon2	c.G763T	p.V255L	TTCTATGTACCTT	.	147	41	107	0	.	0	0	0	0	0	T	4674519	G	T	4674519	3	4	10	1	0	0	0	0	1	0	0	0	11123	1377	48	3	765	3	OR51E1	11	4674519	Missense_Mutation	SNP	G	TCGA-OR-A5JB-01A-11D-A29I-10	921797	4674519	130331997	231	2474										
OR52N2	390077	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	5842285	5842285	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	gatgctcgtcacaaagccttCagcacctgcacatctcacat	6	15	3	0	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	OR52N2-70	NM_001005174	exon1	c.C720T	p.F240F	AGCCTTCAGCACC	.	294	101	205	1	.	0	0	0	0	0	T	5842285	C	T	5842285	2	4	10	1	0	0	0	0	0	0	0	1	11157	825	29	3		3	OR52N2	11	5842285	Silent	SNP	C	TCGA-OR-A5JB-01A-11D-A29I-10	1167766	5842285	129164231	232	2475										
OR52E6	390078	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	5862980	5862980	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	actctgctcagtttggatcaCaaagaagatagcagcatttc	8	9	3	2	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	OR52E6-68	NM_001005167	exon1	c.G148T	p.V50L	GGATCACAAAGAA	.	257	61	157	0	.	0	0	0	0	0	A	5862980	C	A	5862980	3	1	10	1	0	0	0	0	1	0	0	0	11146	478	17	3	795	3	OR52E6	11	5862980	Missense_Mutation	SNP	C	TCGA-OR-A5JB-01A-11D-A29I-10	20695	5862980	129143536	233	2476										
OR52L1	338751	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	6007764	6007764	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	atccagagccatggccacaaGtacccctgactccatggagg	10	14	0	2	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	OR52L1-91	NM_001005173	exon1	c.C397A	p.L133I	CCACAAGTACCCC	.	242	75	154	0	.	0	0	0	0	0	T	6007764	G	T	6007764	3	4	10	1	0	0	0	0	1	0	0	0	11154	1029	36	3	596	3	OR52L1	11	6007764	Missense_Mutation	SNP	G	TCGA-OR-A5JB-01A-11D-A29I-10	144784	6007764	128998752	234	2477										
SMPD1	6609	hgsc.bcm.edu	37	chr11	6413009	6413009	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	ggttctggcctgccgcccgcAtcccggccaggtgccggata	14	16	1	0	rs2682091	byfrequency;alternate_allele	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	SMPD1-90	NM_000543	exon2	c.A714C	p.A238A	GCCCGCATCCCGG	.	62	5	11	0	A|0.960;G|0.040	16	15	1	0	0	C	6413009	A	C	6413009	2	2	10	1	0	0	0	0	0	0	0	1	14839	204	8	5		5	SMPD1	11	6413009	Silent	SNP	A	TCGA-OR-A5JB-01A-11D-A29I-10	405245	6413009	128593507	235	2478										
DNHD1	144132	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	6554962	6554962	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	tggaggagcgaatggaatacGtacgggcactccacgaactc	13	10	0	0	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	DNHD1-24	NM_144666	exon14	c.G2557C	p.V853L	GAATACGTACGGG	.	329	122	245	1	.	0	0	0	0	0	C	6554962	G	C	6554962	3	2	10	1	0	0	0	0	1	0	0	0	4679	1145	40	2	2612	2	DNHD1	11	6554962	Missense_Mutation	SNP	G	TCGA-OR-A5JB-01A-11D-A29I-10	141953	6554962	128451554	236	2479										
CALCA	796	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	14991506	14991506	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	gccctctctctcttgctcctGctccagctcactggccttca	6	19	4	0	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	CALCA-514	NM_001033953	exon3	c.C202G	p.Q68E	GCTCCTGCTCCAG	.	346	105	252	0	.	0	0	0	0	0	C	14991506	G	C	14991506	3	2	10	1	0	0	0	0	1	0	0	0	2581	1328	46	3	395	3	CALCA	11	14991506	Missense_Mutation	SNP	G	TCGA-OR-A5JB-01A-11D-A29I-10	8436544	14991506	120015010	237	2480										
LUZP2	338645	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr11	25071584	25071584	+	Frame_Shift_Del	DEL	C	C	-													0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	ctctcttcgtctcttttaagCctcaacaaagtgcttctgga					novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	LUZP2-92	NM_001009909	exon10	c.766delC	p.P256fs	TTTAAGCCTCAAC	.	52	21	49	0	.	0	0	0	0	0	-	25071584	C	-	25071584	7	5	10	1	0	1	0	1	0	0	0	0	9114	753	26	0	804	0	LUZP2	11	25071584	Frame_Shift_Del	DEL	C	TCGA-OR-A5JB-01A-11D-A29I-10	10080078	25071584	109934932	238	2481										
FIBIN	387758	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	27016195	27016195	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	ccactacttcgtgcccgatgGggactatgaggagaacgatg	13	10	0	2	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	FIBIN-68	NM_203371	exon1	c.G122T	p.G41V	CCGATGGGGACTA	.	165	66	92	0	.	0	0	0	0	0	T	27016195	G	T	27016195	3	4	10	1	0	0	0	0	1	0	0	0	5904	1232	43	3	124	3	FIBIN	11	27016195	Missense_Mutation	SNP	G	TCGA-OR-A5JB-01A-11D-A29I-10	1944611	27016195	107990321	239	2482										
HIPK3	10114	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	33363182	33363182	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	aggaactgctcagtttggttGtggtgatgcttttcagcaga	13	6	2	2	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	HIPK3-336	NM_001048200	exon8	c.G1847T	p.C616F	TTGGTTGTGGTGA	.	120	40	87	0	.	1	1	0	0	0	T	33363182	G	T	33363182	3	4	10	1	0	0	0	0	1	0	0	0	7139	1377	48	3	1873	3	HIPK3	11	33363182	Missense_Mutation	SNP	G	TCGA-OR-A5JB-01A-11D-A29I-10	6346987	33363182	101643334	240	2483										
PAMR1	25891	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	35547114	35547114	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	gaaaagtgagccccaactgcGtccagcaacccagctccatc	8	16	0	1	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	PAMR1-70	NM_001001991	exon1	c.C20A	p.T7K	AACTGCGTCCAGC	.	112	26	72	0	.	0	0	0	0	0	T	35547114	G	T	35547114	3	4	10	1	0	0	0	0	1	0	0	0	11442	1145	40	2	2241	2	PAMR1	11	35547114	Missense_Mutation	SNP	G	TCGA-OR-A5JB-01A-11D-A29I-10	2183932	35547114	99459402	241	2484										
LRRC4C	57689	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	40136500	40136500	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	aaaagtaagagaaaggagtaGtggttgctgcagtaacattc	12	4	0	1	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	LRRC4C-521	NM_001258419	exon7	c.C1343T	p.T448I	GGAGTAGTGGTTG	.	227	77	171	0	.	0	0	0	0	0	A	40136500	G	A	40136500	3	1	10	1	0	0	0	0	1	0	0	0	9035	1029	36	3	583	3	LRRC4C	11	40136500	Missense_Mutation	SNP	G	TCGA-OR-A5JB-01A-11D-A29I-10	4589386	40136500	94870016	242	2485										
OR4P4	81300	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	55405833	55405833	+	Splice_Site	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	atgttctatctacactggacCatggaaaaaagcaataatag	7	7	2	0	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	OR4P4-68	.	.	.	.	CTGGACCATGGAA	.	19	11	30	0	.	0	0	0	0	0	A	55405833	C	A	55405833	5	1	10	1	0	0	0	0	0	0	1	0	11109	609	21	3	2	3	OR4P4	11	55405833	Splice_Site	SNP	C	TCGA-OR-A5JB-01A-11D-A29I-10	15269333	55405833	79600683	243	2486										
OR10W1	81341	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	58035112	58035112	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	tctgactgtagggtgttggcCaggatatggggcaccaccac	14	10	1	1	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	OR10W1-69	NM_207374	exon1	c.G219T	p.L73L	GTTGGCCAGGATA	.	130	49	100	1	.	0	0	0	0	0	A	58035112	C	A	58035112	2	1	10	1	0	0	0	0	0	0	0	1	10950	581	21	3		3	OR10W1	11	58035112	Silent	SNP	C	TCGA-OR-A5JB-01A-11D-A29I-10	2629279	58035112	76971404	244	2487										
OR5B12	390191	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr11	58206694	58206694	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	ttataattaaaatatgaatcCtatagaggcctttgccttcc	5	8	0	2	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	OR5B12-68	NM_001004733	exon1	c.G931T	p.G311X	TGAATCCTATAGA	.	25	10	33	0	.	0	0	0	0	0	A	58206694	C	A	58206694	4	1	10	1	0	0	0	0	0	1	0	0	11177	690	24	3	17	3	OR5B12	11	58206694	Nonsense_Mutation	SNP	C	TCGA-OR-A5JB-01A-11D-A29I-10	171582	58206694	76799822	245	2488										
TMEM138	51524	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	61133533	61133533	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	acagcatccaggatattgcaGtcctcttcaacatcatcatc	5	13	4	0	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	TMEM138-90	NM_016464	exon3	c.G145A	p.V49I	ATTGCAGTCCTCT	.	152	47	107	0	.	55	25	30	0	0	A	61133533	G	A	61133533	3	1	10	1	0	0	0	0	1	0	0	0	16090	1029	36	3	151	3	TMEM138	11	61133533	Missense_Mutation	SNP	G	TCGA-OR-A5JB-01A-11D-A29I-10	2926839	61133533	73872983	246	2489										
SCGB2A1	4246	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	61978049	61978049	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	tcaaccagtcacatagaactCtgaaaaactttggactgatg	7	9	3	3	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	SCGB2A1-90	NM_002407	exon2	c.C220G	p.L74V	AGAACTCTGAAAA	.	104	39	59	0	.	0	0	0	0	0	G	61978049	C	G	61978049	3	3	10	1	0	0	0	0	1	0	0	0	13934	912	32	3	226	3	SCGB2A1	11	61978049	Missense_Mutation	SNP	C	TCGA-OR-A5JB-01A-11D-A29I-10	844516	61978049	73028467	247	2490										
MUS81	80198	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	65631183	65631183	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	tggcccaggagaccaatcctAgagacccaggtgaagggccg	14	12	0	3	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	MUS81-227	NM_025128	exon9	c.A952G	p.R318G	AATCCTAGAGACC	.	340	114	208	1	.	4	1	3	0	0	G	65631183	A	G	65631183	3	3	10	1	0	0	0	0	1	0	0	0	10016	412	15	4	986	4	MUS81	11	65631183	Missense_Mutation	SNP	A	TCGA-OR-A5JB-01A-11D-A29I-10	3653134	65631183	69375333	248	2491										
XRRA1	143570	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	74563036	74563036	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	ggtttgcgggcactatacctCgtgtatgggccaccagaggg	15	10	0	1	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	XRRA1-68	NM_182969	exon13	c.G1238A	p.R413Q	ATACCTCGTGTAT	.	164	68	104	0	.	0	0	0	0	0	T	74563036	C	T	74563036	3	4	10	1	0	0	0	0	1	0	0	0	17499	884	31	1	1168	1	XRRA1	11	74563036	Missense_Mutation	SNP	C	TCGA-OR-A5JB-01A-11D-A29I-10	8931853	74563036	60443480	249	2492										
FAT3	120114	ucsc.edu;bcgsc.ca	37	chr11	92534976	92534976	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	aggaagtgtaccgagggaatGtgaaggagagcgacccaccg	16	8	0	2	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	FAT3-73	NM_001008781	exon9	c.G8797C	p.V2933L	GGGAATGTGAAGG	.	236	77	169	2	.	0	0	0	0	0	C	92534976	G	C	92534976	3	2	10	1	0	0	0	0	1	0	0	0	5710	1377	48	3	8831	3	FAT3	11	92534976	Missense_Mutation	SNP	G	TCGA-OR-A5JB-01A-11D-A29I-10	17971940	92534976	42471540	250	2493										
SLC36A4	120103	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	92881943	92881943	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	ggcaggattagggccaatgtGctgctgctcacagctccaac	12	12	1	0	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	SLC36A4-93	NM_152313	exon11	c.C1275T	p.S425S	CAATGTGCTGCTG	.	201	81	168	0	.	33	22	11	0	0	A	92881943	G	A	92881943	2	1	10	1	0	0	0	0	0	0	0	1	14631	1310	46	3		3	SLC36A4	11	92881943	Silent	SNP	G	TCGA-OR-A5JB-01A-11D-A29I-10	346967	92881943	42124573	251	2494										
AASDHPPT	60496	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	105950341	105950341	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	atttcaactttaacatctctCatcaaggagactatgcagtg	6	9	4	1	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	AASDHPPT-90	NM_015423	exon2	c.C331A	p.H111N	ATCTCTCATCAAG	.	134	44	118	0	.	17	12	5	0	0	A	105950341	C	A	105950341	3	1	10	1	0	0	0	0	1	0	0	0	23	826	29	3	337	3	AASDHPPT	11	105950341	Missense_Mutation	SNP	C	TCGA-OR-A5JB-01A-11D-A29I-10	13068398	105950341	29056175	252	2495										
C11orf87	399947	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	chr11	109294764	109294764	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	acccggctggagaggcagccCcgggactctcccttctgcgc	13	17	2	1	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	C11orf87-92	NM_207645	exon2	c.C405G	p.P135P	GCAGCCCCGGGAC	.	67	31	18	0	.	0	0	0	0	0	G	109294764	C	G	109294764	2	3	10	1	0	0	0	0	0	0	0	1	1673	610	22	3		3	C11orf87	11	109294764	Silent	SNP	C	TCGA-OR-A5JB-01A-11D-A29I-10	3344423	109294764	25711752	253	2496										
CBL	867	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	119149280	119149280	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	ttaaaggtactgaacccatcGtggtagatccgtttgatcct	9	9	0	3	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	CBL-4020	NM_005188	exon9	c.G1288T	p.V430L	CCCATCGTGGTAG	.	206	58	197	0	.	1	0	1	0	0	T	119149280	G	T	119149280	3	4	10	1	0	0	0	0	1	0	0	0	2706	1145	40	2	1322	2	CBL	11	119149280	Missense_Mutation	SNP	G	TCGA-OR-A5JB-01A-11D-A29I-10	9854516	119149280	15857236	254	2497										
PVRL1	5818	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr11	119510594	119510594	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	cccggccccatccgtctccgGtgggctcttctgctgccggt	12	18	3	0	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	PVRL1-90	NM_203285	exon6	c.C1132A	p.P378T	TCTCCGGTGGGCT	.	119	35	97	0	.	0	0	0	0	0	T	119510594	G	T	119510594	3	4	10	1	0	0	0	0	1	0	0	0	12874	1261	44	3	256	3	PVRL1	11	119510594	Missense_Mutation	SNP	G	TCGA-OR-A5JB-01A-11D-A29I-10	361314	119510594	15495922	255	2498										
PVRL1	5818	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	119548456	119548456	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	gagtttcccaggataccacaCtgggaggcttcccattggct	11	12	0	0	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	PVRL1-90	NM_002855	exon3	c.G542T	p.S181I	ACCACACTGGGAG	.	280	98	246	0	.	3	1	2	0	0	A	119548456	C	A	119548456	3	1	10	1	0	0	0	0	1	0	0	0	12874	565	20	3	1473	3	PVRL1	11	119548456	Missense_Mutation	SNP	C	TCGA-OR-A5JB-01A-11D-A29I-10	37862	119548456	15458060	256	2499										
TMEM136	219902	hgsc.bcm.edu;bcgsc.ca	37	chr11	120198134	120198134	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	tcctttgtttttctggttttGgtcttttcatcacaggatgg	9	7	4	0	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	TMEM136-91	NM_001198670	exon2	c.G50T	p.W17L	GGTTTTGGTCTTT	.	73	4	77	0	.	0	0	0	0	0	T	120198134	G	T	120198134	3	4	10	1	0	0	0	0	1	0	0	0	16089	1357	47	3	52	3	TMEM136	11	120198134	Missense_Mutation	SNP	G	TCGA-OR-A5JB-01A-11D-A29I-10	649678	120198134	14808382	257	2500										
TMEM225	338661	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	123754008	123754008	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	tgtcagatttatggatgttcAggcaggtacagctactggta	12	6	2	1	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	TMEM225-93	NM_001013743	exon4	c.T515C	p.L172P	ATGTTCAGGCAGG	.	111	35	91	0	.	0	0	0	0	0	G	123754008	A	G	123754008	3	3	10	1	0	0	0	0	1	0	0	0	16184	188	7	4	166	4	TMEM225	11	123754008	Missense_Mutation	SNP	A	TCGA-OR-A5JB-01A-11D-A29I-10	3555874	123754008	11252508	258	2501										
NCAPD2	9918	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	6639952	6639952	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	attggccaagcaggtagccaGagagcgccatcagccaagaa	12	11	1	2	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	NCAPD2-660	NM_014865	exon30	c.G3933A	p.Q1311Q	TAGCCAGAGAGCG	.	112	48	88	0	.	137	60	77	0	0	A	6639952	G	A	6639952	2	1	10	1	0	0	0	0	0	0	0	1	10234	933	33	3		3	NCAPD2	12	6639952	Silent	SNP	G	TCGA-OR-A5JB-01A-11D-A29I-10		6639952	127211943	259	2502										
FAM90A1	55138	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	8375115	8375115	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	cttctcgacagccacccgcaGggctgctgtgtgtcggcttc	12	15	1	0	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	FAM90A1-91	NM_018088	exon7	c.C698A	p.P233H	CCCGCAGGGCTGC	.	126	25	71	0	.	0	0	0	0	0	T	8375115	G	T	8375115	3	4	10	1	0	0	0	0	1	0	0	0	5669	1000	35	3	700	3	FAM90A1	12	8375115	Missense_Mutation	SNP	G	TCGA-OR-A5JB-01A-11D-A29I-10	1735163	8375115	125476780	260	2503										
GPR19	2842	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	12814767	12814767	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	atagttacaatgactgtcccAgttggagccatagaaaaaga	9	7	0	3	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	GPR19-91	NM_006143	exon4	c.T616A	p.W206R	TGTCCCAGTTGGA	.	82	36	93	0	.	0	0	0	0	0	T	12814767	A	T	12814767	3	4	10	1	0	0	0	0	1	0	0	0	6699	188	7	5	635	5	GPR19	12	12814767	Missense_Mutation	SNP	A	TCGA-OR-A5JB-01A-11D-A29I-10	4439652	12814767	121037128	261	2504										
PIK3C2G	5288	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	18435177	18435177	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	agtggcaaaattccacactaCgagagtgaaattgatgaaaa	9	6	0	4	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	PIK3C2G-1312	NM_004570	exon2	c.C162T	p.Y54Y	ACACTACGAGAGT	.	80	21	92	0	.	0	0	0	0	0	T	18435177	C	T	18435177	2	4	10	1	0	0	0	0	0	0	0	1	11940	547	19	1		1	PIK3C2G	12	18435177	Silent	SNP	C	TCGA-OR-A5JB-01A-11D-A29I-10	5620410	18435177	115416718	262	2505										
TMTC1	83857	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	29786206	29786206	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	ccgacctgccagtcatagcaCagggtcacgggtgcaagcag	13	13	2	0	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	TMTC1-90	NM_001193451	exon6	c.G1002T	p.L334L	ATAGCACAGGGTC	.	233	86	131	0	.	0	0	0	0	0	A	29786206	C	A	29786206	2	1	10	1	0	0	0	0	0	0	0	1	16297	465	17	3		3	TMTC1	12	29786206	Silent	SNP	C	TCGA-OR-A5JB-01A-11D-A29I-10	11351029	29786206	104065689	263	2506										
RAPGEF3	10411	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	48131974	48131974	+	Splice_Site	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	ccccggggacccgccctctcAccagggttgtggcttcggca	13	17	1	0	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	RAPGEF3-660	NM_006105	exon27	c.2455+2T>A	.	CCTCTCACCAGGG	.	204	70	141	0	.	0	0	0	0	0	T	48131974	A	T	48131974	5	4	10	1	0	0	0	0	0	0	1	0	13080	173	6	5	200	5	RAPGEF3	12	48131974	Splice_Site	SNP	A	TCGA-OR-A5JB-01A-11D-A29I-10	18345768	48131974	85719921	264	2507										
SCN8A	6334	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	52163733	52163733	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	aggtccctgtggaacagcctGaggaatacttggatccagat	12	9	0	2	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	SCN8A-29	NM_014191	exon18	c.G3454C	p.E1152Q	CAGCCTGAGGAAT	.	200	63	124	0	.	0	0	0	0	0	C	52163733	G	C	52163733	3	2	10	1	0	0	0	0	1	0	0	0	13959	1291	45	3	3520	3	SCN8A	12	52163733	Missense_Mutation	SNP	G	TCGA-OR-A5JB-01A-11D-A29I-10	4031759	52163733	81688162	265	2508										
FIGNL2	401720	hgsc.bcm.edu	37	chr12	52215211	52215211	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	ggggagcccaggaccttgagGgggacgccgccaccgtactt	16	13	0	1	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	.	NM_001013690	exon2	c.C987T	p.P329P	CTTGAGGGGGACG	.	46	24	1	0	.	0	0	0	0	0	A	52215211	G	A	52215211	2	1	10	1	0	0	0	0	0	0	0	1	5912	1219	43	3		3	FIGNL2	12	52215211	Silent	SNP	G	TCGA-OR-A5JB-01A-11D-A29I-10	51478	52215211	81636684	266	2509										
KRT75	9119	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	52827680	52827680	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	ctggatggtggggtcgatttGcaggtgaagaggagtcagga	19	4	1	2	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	KRT75-90	NM_004693	exon1	c.C409A	p.Q137K	CGATTTGCAGGTG	.	302	84	205	1	.	0	0	0	0	0	T	52827680	G	T	52827680	3	4	10	1	0	0	0	0	1	0	0	0	8509	1328	46	3	1282	3	KRT75	12	52827680	Missense_Mutation	SNP	G	TCGA-OR-A5JB-01A-11D-A29I-10	612469	52827680	81024215	267	2510										
KRT2	3849	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	53044230	53044230	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	ctcttgaggctgtcgatataCccctggaagatgggctccag	12	11	1	2	rs141066050		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	KRT2-92	NM_000423	exon2	c.G693T	p.G231G	GATATACCCCTGG	.	163	54	113	2	C|1.000;A|0.000	0	0	0	0	0	A	53044230	C	A	53044230	2	1	10	1	0	0	0	0	0	0	0	1	8478	494	18	3		3	KRT2	12	53044230	Silent	SNP	C	TCGA-OR-A5JB-01A-11D-A29I-10	216550	53044230	80807665	268	2511										
SPRYD3	84926	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	53470946	53470946	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	tgtttgaacctctcctgataTcggaaagctcggacctctcg	9	12	2	2	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	SPRYD3-90	NM_032840	exon2	c.A123T	p.R41R	CTGATATCGGAAA	.	53	13	68	0	.	3	0	3	0	0	A	53470946	T	A	53470946	2	1	10	1	0	0	0	0	0	0	0	1	15146	1422	50	5		5	SPRYD3	12	53470946	Silent	SNP	T	TCGA-OR-A5JB-01A-11D-A29I-10	426716	53470946	80380949	269	2512										
OR9K2	441639	broad.mit.edu	37	chr12	55523835	55523835	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	taggcaatctctccttcattGatcttttctattcatctgtt	4	10	6	1	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	OR9K2-69	NM_001005243	exon1	c.G283T	p.D95Y	TTCATTGATCTTT	.	13	3	23	0	.	0	0	0	0	0	T	55523835	G	T	55523835	3	4	10	1	0	0	0	0	1	0	0	0	11283	1290	45	3	285	3	OR9K2	12	55523835	Missense_Mutation	SNP	G	TCGA-OR-A5JB-01A-11D-A29I-10	2052889	55523835	78328060	270	2513										
GRIP1	23426	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	66773061	66773061	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	cattggttgaaaaccttaccCactggctgtggaccggtccc	10	13	0	1	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	GRIP1-494	NM_001178074	exon19	c.G2464T	p.G822C	CTTACCCACTGGC	.	152	88	155	0	.	0	0	0	0	0	A	66773061	C	A	66773061	3	1	10	1	0	0	0	0	1	0	0	0	6808	608	21	3	790	3	GRIP1	12	66773061	Missense_Mutation	SNP	C	TCGA-OR-A5JB-01A-11D-A29I-10	11249226	66773061	67078834	271	2514										
RAP1B	5908	bcgsc.ca	37	chr12	69047921	69047921	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	acagcaatgagggatttataCatgaaaaatggacaaggatt	10	4	0	2	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	RAP1B-1271	NM_001010942	exon5	c.C213T	p.Y71Y	TTTATACATGAAA	.	230	9	285	1	.	40	40	0	0	0	T	69047921	C	T	69047921	2	4	10	1	0	0	0	0	0	0	0	1	13071	489	17	3		3	RAP1B	12	69047921	Silent	SNP	C	TCGA-OR-A5JB-01A-11D-A29I-10	2274860	69047921	64803974	272	2515										
C12orf50	160419	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr12	88381692	88381692	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	catttaatacatgcgttgtaGgtactagtcgggtagttagg	12	5	0	0	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	C12orf50-93	NM_152589	exon9	c.C752A	p.P251H	GTTGTAGGTACTA	.	111	6	117	0	.	0	0	0	0	0	T	88381692	G	T	88381692	3	4	10	1	0	0	0	0	1	0	0	0	1699	1000	35	3	512	3	C12orf50	12	88381692	Missense_Mutation	SNP	G	TCGA-OR-A5JB-01A-11D-A29I-10	19333771	88381692	45470203	273	2516										
AMDHD1	144193	hgsc.bcm.edu	37	chr12	96337183	96337183	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	cggcgcgaggcgacatggcaAgcggccacagcctcctgctg	15	15	0	0	rs7955450	byfrequency	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	AMDHD1-90	NM_152435	exon1	c.A7G	p.S3G	ATGGCAAGCGGCC	.	9	9	0	0	A|0.273;G|0.727	0	0	0	0	0	G	96337183	A	G	96337183	3	3	10	1	0	0	0	0	1	0	0	0	567	72	3	4	9	4	AMDHD1	12	96337183	Missense_Mutation	SNP	A	TCGA-OR-A5JB-01A-11D-A29I-10	7955491	96337183	37514712	274	2517										
AMDHD1	144193	hgsc.bcm.edu	37	chr12	96337225	96337225	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	agaacgcgcagcaagtggtgCtggtgtgcgcccgcggcgag	18	11	0	1	rs1436121	byfrequency	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	AMDHD1-90	NM_152435	exon1	c.C49T	p.L17L	GTGGTGCTGGTGT	.	11	11	0	0	C|0.752;T|0.248	2	0	2	0	0	T	96337225	C	T	96337225	2	4	10	1	0	0	0	0	0	0	0	1	567	796	28	3		3	AMDHD1	12	96337225	Silent	SNP	C	TCGA-OR-A5JB-01A-11D-A29I-10	42	96337225	37514670	275	2518										
TMPO	7112	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	98940140	98940140	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	tgtctgtttcttattaggtgGgagaaaaaacagaggaaaga	12	3	2	3	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	TMPO-93	NM_001032283	exon8	c.G994T	p.G332X	TAGGTGGGAGAAA	.	102	31	108	0	.	0	0	0	0	0	T	98940140	G	T	98940140	4	4	10	1	0	0	0	0	0	1	0	0	16274	1233	43	3	2548	3	TMPO	12	98940140	Nonsense_Mutation	SNP	G	TCGA-OR-A5JB-01A-11D-A29I-10	2602915	98940140	34911755	276	2519										
UTP20	27340	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	101723173	101723173	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	tacctgccgaagattttgcaGatactgctctgtatgacagc	9	10	1	3	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	UTP20-155	NM_014503	exon27	c.G3363A	p.Q1121Q	TTTGCAGATACTG	.	123	45	88	0	.	0	0	0	0	0	A	101723173	G	A	101723173	2	1	10	1	0	0	0	0	0	0	0	1	17137	933	33	3		3	UTP20	12	101723173	Silent	SNP	G	TCGA-OR-A5JB-01A-11D-A29I-10	2783033	101723173	32128722	277	2520										
CHPT1	56994	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	102117036	102117036	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	agtcagcaactgatgtgtttGaaaagcatccttgtctttat	8	7	2	2	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	CHPT1-90	NM_020244	exon6	c.G871C	p.E291Q	GTGTTTGAAAAGC	.	79	37	79	0	.	83	18	65	0	0	C	102117036	G	C	102117036	3	2	10	1	0	0	0	0	1	0	0	0	3376	1291	45	3	893	3	CHPT1	12	102117036	Missense_Mutation	SNP	G	TCGA-OR-A5JB-01A-11D-A29I-10	393863	102117036	31734859	278	2521										
STAB2	55576	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	104107546	104107546	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	gtgatggcattgtgtgcctgGgtaggtgtccttccctcttc	13	10	1	1	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	STAB2-104	NM_017564	exon42	c.G4537T	p.E1513X	TGCCTGGGTAGGT	.	120	36	97	0	.	0	0	0	0	0	T	104107546	G	T	104107546	4	4	10	1	0	0	0	0	0	1	0	0	15275	1246	43	3	4703	3	STAB2	12	104107546	Nonsense_Mutation	SNP	G	TCGA-OR-A5JB-01A-11D-A29I-10	1990510	104107546	29744349	279	2522										
UBE3B	89910	broad.mit.edu;bcgsc.ca	37	chr12	109940954	109940954	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	ctgtgtcctctaccagacctCgctgacaactctcacacaga	6	16	2	3	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	UBE3B-660	NM_130466	exon14	c.C1409T	p.S470L	AGACCTCGCTGAC	.	125	49	99	2	.	3	0	3	0	0	T	109940954	C	T	109940954	3	4	10	1	0	0	0	0	1	0	0	0	16918	893	31	1	1455	1	UBE3B	12	109940954	Missense_Mutation	SNP	C	TCGA-OR-A5JB-01A-11D-A29I-10	5833408	109940954	23910941	280	2523										
OAS1	4938	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	113348875	113348875	+	Nonsense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	ggtcagttgactggcggctaTaaacctaacccccaaatcta	8	12	2	1	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	OAS1-70	NM_001032409	exon3	c.T489G	p.Y163X	CGGCTATAAACCT	.	202	74	167	0	.	0	0	0	0	0	G	113348875	T	G	113348875	4	3	10	1	0	0	0	0	0	1	0	0	10828	1413	49	5	499	5	OAS1	12	113348875	Nonsense_Mutation	SNP	T	TCGA-OR-A5JB-01A-11D-A29I-10	3407921	113348875	20503020	281	2524										
SDS	10993	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr12	113836362	113836363	+	Missense_Mutation	DNP	GG	GG	AT													0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	ggggaatgtagacccaacccGggttgttcttcgctagggcc					novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	GG	GG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	SDS-91	NM_006843	exon5	c.C382A	p.P128M	AACCCGGGTTGTT	.	68	0	33	0	.	0	0	0	0	0	AT	113836363	GG	AT	113836362	3	1	10	1	0	0	0	0	1	0	0	0	14010	1116	39	1	619	1	SDS	12	113836362	Missense_Mutation	DNP	GG	TCGA-OR-A5JB-01A-11D-A29I-10	487487	113836362	20015533	282	2525										
PIWIL1	9271	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	130830339	130830339	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	ttcaggagttatcgttagcaGagagaggaggtcgtcgtaga	15	5	1	3	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	PIWIL1-92	NM_004764	exon4	c.G232A	p.E78K	TTAGCAGAGAGAG	.	142	51	103	0	.	0	0	0	0	0	A	130830339	G	A	130830339	3	1	10	1	0	0	0	0	1	0	0	0	11986	943	33	3	242	3	PIWIL1	12	130830339	Missense_Mutation	SNP	G	TCGA-OR-A5JB-01A-11D-A29I-10	16993977	130830339	3021556	283	2526										
TPTE2	93492	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr13	20024411	20024411	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	cataaaacttactgtagagtGgggacattatgatcatcaat	8	6	2	2	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	TPTE2-92	NM_199254	exon13	c.C876T	p.P292P	TAGAGTGGGGACA	.	249	137	337	0	.	0	0	0	0	0	A	20024411	G	A	20024411	2	1	10	1	0	0	0	0	0	0	0	1	16469	1335	47	3		3	TPTE2	13	20024411	Silent	SNP	G	TCGA-OR-A5JB-01A-11D-A29I-10		20024411	95145467	284	2527										
DCLK1	9201	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr13	36384973	36384973	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	acataagagaagcatttaccCagtctctgcaatgatttctg	7	9	2	2	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	DCLK1-826	NM_004734	exon12	c.G1687T	p.G563X	TTTACCCAGTCTC	.	40	22	43	0	.	0	0	0	0	0	A	36384973	C	A	36384973	4	1	10	1	0	0	0	0	0	1	0	0	4297	608	21	3	530	3	DCLK1	13	36384973	Nonsense_Mutation	SNP	C	TCGA-OR-A5JB-01A-11D-A29I-10	16360562	36384973	78784905	285	2528										
MED4	29079	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr13	48655799	48655799	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	acctggaacccaggtcagtgGagcacatacagcattacttg	10	11	1	0	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	MED4-187	NM_014166	exon5	c.C490A	p.P164T	TCAGTGGAGCACA	.	58	32	54	0	.	82	8	74	0	0	T	48655799	G	T	48655799	3	4	10	1	0	0	0	0	1	0	0	0	9478	1174	41	3	334	3	MED4	13	48655799	Missense_Mutation	SNP	G	TCGA-OR-A5JB-01A-11D-A29I-10	12270826	48655799	66514079	286	2529										
ATP7B	540	bcgsc.ca	37	chr13	52509068	52509068	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	gggggagtcccgccacctgtCatccatgcctatgtgcacac	11	15	1	0	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	ATP7B-92	NM_000053	exon21	c.G4222T	p.D1408Y	ACCTGTCATCCAT	.	82	44	101	3	.	1	0	1	0	0	A	52509068	C	A	52509068	3	1	10	1	0	0	0	0	1	0	0	0	1192	826	29	3	179	3	ATP7B	13	52509068	Missense_Mutation	SNP	C	TCGA-OR-A5JB-01A-11D-A29I-10	3853269	52509068	62660810	287	2530										
OLFM4	10562	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr13	53624435	53624435	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	attgccagagttaacctgacCaccaacacgattgctgtgac	8	12	0	3	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	OLFM4-69	NM_006418	exon5	c.C1062A	p.T354T	CCTGACCACCAAC	.	210	120	196	0	.	0	0	0	0	0	A	53624435	C	A	53624435	2	1	10	1	0	0	0	0	0	0	0	1	10884	581	21	3		3	OLFM4	13	53624435	Silent	SNP	C	TCGA-OR-A5JB-01A-11D-A29I-10	1115367	53624435	61545443	288	2531										
DIAPH3	81624	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr13	60545177	60545177	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	aggtggtgggggaggaggtgGaggcggcacccctccaccag	20	10	0	0	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	DIAPH3-516	NM_001042517	exon16	c.C1768G	p.P590A	GAGGTGGAGGCGG	.	93	64	72	0	.	1	0	1	0	0	C	60545177	G	C	60545177	3	2	10	1	0	0	0	0	1	0	0	0	4531	1174	41	3	1885	3	DIAPH3	13	60545177	Missense_Mutation	SNP	G	TCGA-OR-A5JB-01A-11D-A29I-10	6920742	60545177	54624701	289	2532										
KLHL1	57626	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr13	70413106	70413106	+	Splice_Site	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	atataaatccagaattaaatAcctttgttgttatccattcc	3	8	0	1	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	KLHL1-90	NM_020866	exon7	c.1414+2T>A	.	TTAAATACCTTTG	.	27	17	39	0	.	0	0	0	0	0	T	70413106	A	T	70413106	5	4	10	1	0	0	0	0	0	0	1	0	8386	405	14	5	854	5	KLHL1	13	70413106	Splice_Site	SNP	A	TCGA-OR-A5JB-01A-11D-A29I-10	9867929	70413106	44756772	290	2533										
TMCO3	55002	bcgsc.ca	37	chr13	114154419	114154419	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	aaccagtatattttgaccaaGcccagagattcaaccatccc	5	13	1	2	rs2260159	byfrequency	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	TMCO3-90	NM_017905	exon4	c.G771A	p.K257K	GACCAAGCCCAGA	.	147	6	163	2	G|0.796;A|0.204	10	10	0	0	0	A	114154419	G	A	114154419	2	1	10	1	0	0	0	0	0	0	0	1	16034	962	34	3		3	TMCO3	13	114154419	Silent	SNP	G	TCGA-OR-A5JB-01A-11D-A29I-10	43741313	114154419	1015459	291	2534										
POTEM	641455	bcgsc.ca	37	chr14	20020123	20020123	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	tgccgctccccctgcaccagGggaagcagtggcggcaccac	13	17	0	0	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	.	NM_001145442	exon1	c.C98A	p.P33H	CACCAGGGGAAGC	.	902	201	636	4	.	0	0	0	0	0	T	20020123	G	T	20020123	3	4	10	1	0	0	0	0	1	0	0	0	12297	1232	43	3	1468	3	POTEM	14	20020123	Missense_Mutation	SNP	G	TCGA-OR-A5JB-01A-11D-A29I-10		20020123	87329417	292	2535										
DCAF11	80344	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	24584856	24584856	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	cgggtccggagacccctccgAgggcttgccccgaagagggg	17	14	0	2	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	.	NM_181357	exon2	c.A53T	p.E18V	CCTCCGAGGGCTT	.	69	20	57	0	.	6	1	5	0	0	T	24584856	A	T	24584856	3	4	10	1	0	0	0	0	1	0	0	0	4268	304	11	5	55	5	DCAF11	14	24584856	Missense_Mutation	SNP	A	TCGA-OR-A5JB-01A-11D-A29I-10	4564733	24584856	82764684	293	2536										
FOXG1	2290	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr14	29237443	29237443	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	tcctgtccctgcaccaccccCgcgccagcagcactttgagt	8	19	0	1	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	FOXG1-660	NM_005249	exon1	c.C958A	p.R320S	CACCCCCGCGCCA	.	130	46	43	0	.	0	0	0	0	0	A	29237443	C	A	29237443	3	1	10	1	0	0	0	0	1	0	0	0	6026	652	23	2	960	2	FOXG1	14	29237443	Missense_Mutation	SNP	C	TCGA-OR-A5JB-01A-11D-A29I-10	4652587	29237443	78112097	294	2537										
LRFN5	145581	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	42356008	42356008	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	gtggaactgcggttggcagaCaattttgttacaaatattaa	10	5	0	1	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	LRFN5-97	NM_152447	exon3	c.C180G	p.D60E	GGCAGACAATTTT	.	93	30	129	1	.	0	0	0	0	0	G	42356008	C	G	42356008	3	3	10	1	0	0	0	0	1	0	0	0	8968	477	17	3	182	3	LRFN5	14	42356008	Missense_Mutation	SNP	C	TCGA-OR-A5JB-01A-11D-A29I-10	13118565	42356008	64993532	295	2538										
FANCM	57697	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	45645661	45645661	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	ttctgttacctttgatttagGattctgtagtccagattctg	8	7	3	2	rs146490925		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	FANCM-569	NM_020937	exon14	c.G3704T	p.G1235V	ATTTAGGATTCTG	.	23	7	41	0	G|1.000;T|0.000	0	0	0	0	0	T	45645661	G	T	45645661	3	4	10	1	0	0	0	0	1	0	0	0	5690	1174	41	3	3758	3	FANCM	14	45645661	Missense_Mutation	SNP	G	TCGA-OR-A5JB-01A-11D-A29I-10	3289653	45645661	61703879	296	2539										
TXNDC16	57544	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr14	52923853	52923853	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	aaattccagtgataacatatCcttttaggtagtttcctgct	6	8	0	1	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	TXNDC16-22	NM_020784	exon17	c.G1658C	p.G553A	ACATATCCTTTTA	.	61	23	61	0	.	0	0	0	0	0	G	52923853	C	G	52923853	3	3	10	1	0	0	0	0	1	0	0	0	16833	855	30	3	839	3	TXNDC16	14	52923853	Missense_Mutation	SNP	C	TCGA-OR-A5JB-01A-11D-A29I-10	7278192	52923853	54425687	297	2540										
TXNDC16	57544	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	53004373	53004373	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	ccacagtatcttgatatttcTtctttgacacaattaacctt	3	10	3	2	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	TXNDC16-22	NM_020784	exon5	c.A261G	p.E87E	TATTTCTTCTTTG	.	29	5	19	0	.	0	0	0	0	0	C	53004373	T	C	53004373	2	2	10	1	0	0	0	0	0	0	0	1	16833	1606	56	4		4	TXNDC16	14	53004373	Silent	SNP	T	TCGA-OR-A5JB-01A-11D-A29I-10	80520	53004373	54345167	298	2541										
DACT1	51339	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr14	59113119	59113119	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	ccgcggcccagccctccaggGgctggagaacggcttgccca	14	17	0	1	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	DACT1-291	NM_016651	exon4	c.G1778T	p.G593V	TCCAGGGGCTGGA	.	83	26	52	0	.	0	0	0	0	0	T	59113119	G	T	59113119	3	4	10	1	0	0	0	0	1	0	0	0	4228	1232	43	3	1792	3	DACT1	14	59113119	Missense_Mutation	SNP	G	TCGA-OR-A5JB-01A-11D-A29I-10	6108746	59113119	48236421	299	2542										
TMEM30B	161291	hgsc.bcm.edu	37	chr14	61747742	61747742	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	gccgatgaaggccaggcccgCgcagaagaagagcggcagcg	17	12	0	4	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	TMEM30B-90	NM_001017970	exon1	c.G124T	p.A42S	GGCCCGCGCAGAA	.	33	16	6	0	.	2	2	0	0	0	A	61747742	C	A	61747742	3	1	10	1	0	0	0	0	1	0	0	0	16191	768	27	2	935	2	TMEM30B	14	61747742	Missense_Mutation	SNP	C	TCGA-OR-A5JB-01A-11D-A29I-10	2634623	61747742	45601798	300	2543										
ZFYVE26	23503	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr14	68251818	68251818	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	aaggagaactgcagcaagggTgctgcagtaactgaagaagg	15	6	0	3	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	ZFYVE26-162	NM_015346	exon19	c.A3481T	p.T1161S	CAAGGGTGCTGCA	.	162	53	124	0	.	2	2	0	0	0	A	68251818	T	A	68251818	3	1	10	1	0	0	0	0	1	0	0	0	17705	1696	59	5	4234	5	ZFYVE26	14	68251818	Missense_Mutation	SNP	T	TCGA-OR-A5JB-01A-11D-A29I-10	6504076	68251818	39097722	301	2544										
ACTN1	87	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr14	69349604	69349604	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	actcacgtggtcccatttgcCattgatctcctgaggcgtga	10	12	2	3	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	ACTN1-514	NM_001102	exon15	c.G1804A	p.G602S	ATTTGCCATTGAT	.	117	32	81	1	.	195	96	99	0	0	T	69349604	C	T	69349604	3	4	10	1	0	0	0	0	1	0	0	0	204	594	21	3	972	3	ACTN1	14	69349604	Missense_Mutation	SNP	C	TCGA-OR-A5JB-01A-11D-A29I-10	1097786	69349604	37999936	302	2545										
TTLL5	23093	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr14	76349181	76349181	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	caagttcttgcgcctccctgGttcccaaacccccacccaac	5	20	1	0	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	TTLL5-92	NM_015072	exon30	c.G3676A	p.V1226I	TCCCTGGTTCCCA	.	124	40	77	0	.	36	20	16	0	0	A	76349181	G	A	76349181	3	1	10	1	0	0	0	0	1	0	0	0	16768	1261	44	3	3790	3	TTLL5	14	76349181	Missense_Mutation	SNP	G	TCGA-OR-A5JB-01A-11D-A29I-10	6999577	76349181	31000359	303	2546										
ASB2	51676	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr14	94420823	94420823	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	atggcctttatcaaggggtcCgcaggcctgtgagaggaagg	16	8	1	1	rs201823942		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	ASB2-228	NM_001202429	exon4	c.G318A	p.A106A	GGGGTCCGCAGGC	.	137	53	95	0	C|0.999;T|0.001	0	0	0	0	0	T	94420823	C	T	94420823	2	4	10	1	0	0	0	0	0	0	0	1	1024	639	23	1		1	ASB2	14	94420823	Silent	SNP	C	TCGA-OR-A5JB-01A-11D-A29I-10	18071642	94420823	12928717	304	2547										
SERPINA12	145264	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	94955965	94955965	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	aggcaggcttacctcgcccaCtttcaggctgcgatgagggg	14	12	1	1	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	SERPINA12-310	NM_173850	exon5	c.G1045T	p.V349L	CGCCCACTTTCAG	.	182	71	131	1	.	0	0	0	0	0	A	94955965	C	A	94955965	3	1	10	1	0	0	0	0	1	0	0	0	14124	565	20	3	207	3	SERPINA12	14	94955965	Missense_Mutation	SNP	C	TCGA-OR-A5JB-01A-11D-A29I-10	535142	94955965	12393575	305	2548										
RTL1	388015	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr14	101347633	101347633	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	gccagggcccaggaacagctCagccagctcctgggctggga	15	14	1	0	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	RTL1-46	NM_001134888	exon1	c.G3493T	p.E1165X	ACAGCTCAGCCAG	.	174	62	80	0	.	0	0	0	0	0	A	101347633	C	A	101347633	4	1	10	1	0	0	0	0	0	1	0	0	13759	835	29	3	587	3	RTL1	14	101347633	Nonsense_Mutation	SNP	C	TCGA-OR-A5JB-01A-11D-A29I-10	6391668	101347633	6001907	306	2549										
CDC42BPB	9578	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr14	103430940	103430940	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	gccgactgcagctccagccgCgcggacatgtccagcttctg	12	16	1	0	rs45512495	byfrequency;alternate_allele	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	CDC42BPB-581	NM_006035	exon19	c.G2625T	p.A875A	CAGCCGCGCGGAC	.	147	47	56	0	C|0.998;T|0.002	3	2	1	0	0	A	103430940	C	A	103430940	2	1	10	1	0	0	0	0	0	0	0	1	3079	755	27	2		2	CDC42BPB	14	103430940	Silent	SNP	C	TCGA-OR-A5JB-01A-11D-A29I-10	2083307	103430940	3918600	307	2550										
CKB	1152	hgsc.bcm.edu	37	chr14	103988180	103988180	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	accgcgagcttctcgatggcGcggcgctccccgcggctgca	14	17	1	0	rs1136165	byfrequency	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	CKB-115	NM_001823	exon4	c.C456A	p.R152R	GATGGCGCGGCGC	.	7	7	0	0	G|0.327;T|0.673	24	12	12	0	0	T	103988180	G	T	103988180	2	4	10	1	0	0	0	0	0	0	0	1	3452	1074	38	2		2	CKB	14	103988180	Silent	SNP	G	TCGA-OR-A5JB-01A-11D-A29I-10	557240	103988180	3361360	308	2551										
KIF26A	26153	hgsc.bcm.edu	37	chr14	104644099	104644099	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	caccacagcggtggcagcagTggctatgagagcctgcggcg	16	12	0	1	rs2497297	byfrequency	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	KIF26A-24	NM_015656	exon12	c.T4974C	p.S1658S	CAGCAGTGGCTAT	.	5	5	0	0	T|0.603;C|0.397	0	0	0	0	0	C	104644099	T	C	104644099	2	2	10	1	0	0	0	0	0	0	0	1	8315	1693	59	4		4	KIF26A	14	104644099	Silent	SNP	T	TCGA-OR-A5JB-01A-11D-A29I-10	655919	104644099	2705441	309	2552										
ADSSL1	122622	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr14	105208191	105208191	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	gctctgtcttgcagggacctAcccctttgtgacttcatcca	8	14	3	1	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	ADSSL1-515	NM_199165	exon9	c.A929C	p.Y310S	GGACCTACCCCTT	.	213	70	152	0	.	0	0	0	0	0	C	105208191	A	C	105208191	3	2	10	1	0	0	0	0	1	0	0	0	348	391	14	5	1159	5	ADSSL1	14	105208191	Missense_Mutation	SNP	A	TCGA-OR-A5JB-01A-11D-A29I-10	564092	105208191	2141349	310	2553										
OR4N4	283694	broad.mit.edu;bcgsc.ca	37	chr15	22382673	22382673	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	ttatttctgggcaacttggcCttcctggatgcatcctactc	8	12	1	0	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	OR4N4-73	NM_001005241	exon1	c.C201A	p.A67A	CTTGGCCTTCCTG	.	329	31	240	0	.	0	0	0	0	0	A	22382673	C	A	22382673	2	1	10	1	0	0	0	0	0	0	0	1	11107	668	24	3		3	OR4N4	15	22382673	Silent	SNP	C	TCGA-OR-A5JB-01A-11D-A29I-10		22382673	80148719	311	2554										
NDN	4692	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr15	23931489	23931489	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	tccagagcttctctgtatcgGgagggccaggcctgggggtc	16	11	1	1	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	NDN-90	NM_002487	exon1	c.C876A	p.S292S	GTATCGGGAGGGC	.	26	13	29	0	.	2	2	0	0	0	T	23931489	G	T	23931489	2	4	10	1	0	0	0	0	0	0	0	1	10276	1219	43	3		3	NDN	15	23931489	Silent	SNP	G	TCGA-OR-A5JB-01A-11D-A29I-10	1548816	23931489	78599903	312	2555										
GABRB3	2562	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr15	26806226	26806226	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	aacacaaagacgaagcagccCataaggtacatgtcaatggc	9	10	1	1	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	GABRB3-518	NM_021912	exon8	c.G933T	p.M311I	GCAGCCCATAAGG	.	134	56	122	0	.	0	0	0	0	0	A	26806226	C	A	26806226	3	1	10	1	0	0	0	0	1	0	0	0	6187	594	21	3	496	3	GABRB3	15	26806226	Missense_Mutation	SNP	C	TCGA-OR-A5JB-01A-11D-A29I-10	2874737	26806226	75725166	313	2556										
HERC2	8924	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	28422657	28422657	+	Splice_Site	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	gccgtcgcgtgccggccaccTgcaacattcacagacacacg	10	17	1	1	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	HERC2-234	NM_004667	exon61	c.9164-2A>G	.	GCCACCTGCAACA	.	120	52	93	0	.	0	0	0	0	0	C	28422657	T	C	28422657	5	2	10	1	0	0	0	0	0	0	1	0	7079	1594	55	4	5478	4	HERC2	15	28422657	Splice_Site	SNP	T	TCGA-OR-A5JB-01A-11D-A29I-10	1616431	28422657	74108735	314	2557										
FMN1	342184	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	33192240	33192240	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	ctatatccatcggcttgtccCcgagtcctatttcctccatt	5	15	0	0	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	FMN1-23	NM_001103184	exon10	c.G2925T	p.R975R	TTGTCCCCGAGTC	.	64	19	50	0	.	0	0	0	0	0	A	33192240	C	A	33192240	2	1	10	1	0	0	0	0	0	0	0	1	5968	610	22	3		3	FMN1	15	33192240	Silent	SNP	C	TCGA-OR-A5JB-01A-11D-A29I-10	4769583	33192240	69339152	315	2558										
INO80	54617	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr15	41313297	41313297	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	tctgcacttcggtcattgcaGtaagaatccaatggcactgc	9	11	2	1	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	INO80-72	NM_017553	exon26	c.C3075G	p.Y1025X	ATTGCAGTAAGAA	.	97	35	90	0	.	7	4	3	0	0	C	41313297	G	C	41313297	4	2	10	1	0	0	0	0	0	1	0	0	7767	1024	36	3	1639	3	INO80	15	41313297	Nonsense_Mutation	SNP	G	TCGA-OR-A5JB-01A-11D-A29I-10	8121057	41313297	61218095	316	2559										
FBN1	2200	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	48714179	48714179	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	cgtatggtgttgggtaaatcCgggaggacatttgcatgtga	15	5	0	1	rs363811	bycluster;byfrequency;alternate_allele	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	FBN1-92	NM_000138	exon61	c.G7540T	p.G2514X	TAAATCCGGGAGG	.	253	117	166	1	C|0.994;T|0.006	13	12	1	0	0	A	48714179	C	A	48714179	4	1	10	1	0	0	0	0	0	1	0	0	5721	661	23	2	1099	2	FBN1	15	48714179	Nonsense_Mutation	SNP	C	TCGA-OR-A5JB-01A-11D-A29I-10	7400882	48714179	53817213	317	2560										
TRPM7	54822	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr15	50888468	50888468	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	ttacttgaaaaatgcaataaGaagattaaccataatgatat	5	4	0	4	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	TRPM7-392	NM_017672	exon23	c.C3274G	p.L1092V	CAATAAGAAGATT	.	152	52	160	0	.	0	0	0	0	0	C	50888468	G	C	50888468	3	2	10	1	0	0	0	0	1	0	0	0	16629	942	33	3	2391	3	TRPM7	15	50888468	Missense_Mutation	SNP	G	TCGA-OR-A5JB-01A-11D-A29I-10	2174289	50888468	51642924	318	2561										
TLN2	83660	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr15	63054564	63054564	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	ctgcacgctctctggccatcAaccccaaagacccacccacc	5	21	2	1	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	TLN2-573	NM_015059	exon36	c.A4873T	p.N1625Y	GCCATCAACCCCA	.	234	86	106	0	.	1	1	0	0	0	T	63054564	A	T	63054564	3	4	10	1	0	0	0	0	1	0	0	0	15985	130	5	5	5015	5	TLN2	15	63054564	Missense_Mutation	SNP	A	TCGA-OR-A5JB-01A-11D-A29I-10	12166096	63054564	39476828	319	2562										
LACTB	114294	hgsc.bcm.edu	37	chr15	63414083	63414083	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	gagacgccatgtaccggctcAtgtcagcagtgactgcccgg	13	13	2	2	rs34317102	byfrequency	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	LACTB-90	NM_171846	exon1	c.A13C	p.M5L	CGGCTCATGTCAG	.	4	4	0	0	A|0.226;C|0.774	0	0	0	0	0	C	63414083	A	C	63414083	3	2	10	1	0	0	0	0	1	0	0	0	8619	217	8	5	15	5	LACTB	15	63414083	Missense_Mutation	SNP	A	TCGA-OR-A5JB-01A-11D-A29I-10	359519	63414083	39117309	320	2563										
MTFMT	123263	hgsc.bcm.edu	37	chr15	65321938	65321938	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	gaggaccccaacagcgccgcAccaacaccctcatcgcctcg	8	20	1	0	rs2946655	byfrequency	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	MTFMT-24	NM_139242	exon1	c.T14C	p.V5A	CGCCGCACCAACA	.	17	8	0	0	A|0.942;G|0.058	4	0	4	0	0	G	65321938	A	G	65321938	3	3	10	1	0	0	0	0	1	0	0	0	9952	159	6	4	1191	4	MTFMT	15	65321938	Missense_Mutation	SNP	A	TCGA-OR-A5JB-01A-11D-A29I-10	1907855	65321938	37209454	321	2564										
IGDCC4	57722	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr15	65687496	65687496	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	gctcccagctgggagtaggcCaccacgtagaactcataatc	10	13	1	1	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	IGDCC4-93	NM_020962	exon8	c.G1512T	p.V504V	GTAGGCCACCACG	.	175	65	104	0	.	0	0	0	0	0	A	65687496	C	A	65687496	2	1	10	1	0	0	0	0	0	0	0	1	7590	581	21	3		3	IGDCC4	15	65687496	Silent	SNP	C	TCGA-OR-A5JB-01A-11D-A29I-10	365558	65687496	36843896	322	2565										
C15orf60	283677	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	73766261	73766261	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	tttccaaggacagacactacTggtaggttttatgcataaca	8	8	0	1	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	C15orf60-46	NM_001042367	exon2	c.T248A	p.L83Q	CACTACTGGTAGG	.	48	10	46	0	.	0	0	0	0	0	A	73766261	T	A	73766261	3	1	10	1	0	0	0	0	1	0	0	0	1812	1594	55	5	254	5	C15orf60	15	73766261	Missense_Mutation	SNP	T	TCGA-OR-A5JB-01A-11D-A29I-10	8078765	73766261	28765131	323	2566										
TBC1D21	161514	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr15	74180025	74180025	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	ggcctacagcatgctgcagaTggtgcgggagcaggtgctgc	17	10	0	1	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	TBC1D21-92	NM_153356	exon9	c.T842C	p.M281T	TGCAGATGGTGCG	.	164	41	91	0	.	0	0	0	0	0	C	74180025	T	C	74180025	3	2	10	1	0	0	0	0	1	0	0	0	15647	1464	51	4	876	4	TBC1D21	15	74180025	Missense_Mutation	SNP	T	TCGA-OR-A5JB-01A-11D-A29I-10	413764	74180025	28351367	324	2567										
CSPG4	1464	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr15	75969502	75969502	+	Nonsense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	gtgcccccaccgccgtgggcAtacactagctgccctgcagc	11	18	0	0	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	CSPG4-229	NM_001897	exon10	c.T5358A	p.Y1786X	GTGGGCATACACT	.	18	4	14	0	.	2	2	0	0	0	T	75969502	A	T	75969502	4	4	10	1	0	0	0	0	0	1	0	0	3966	224	8	5	1614	5	CSPG4	15	75969502	Nonsense_Mutation	SNP	A	TCGA-OR-A5JB-01A-11D-A29I-10	1789477	75969502	26561890	325	2568										
ADAMTS7	11173	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr15	79063945	79063945	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	acctggatccagacaggctcCttggtgggacccggggacgt	15	12	0	1	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	ADAMTS7-226	NM_014272	exon15	c.G2358A	p.K786K	AGGCTCCTTGGTG	.	36	13	30	0	.	0	0	0	0	0	T	79063945	C	T	79063945	2	4	10	1	0	0	0	0	0	0	0	1	271	680	24	3		3	ADAMTS7	15	79063945	Silent	SNP	C	TCGA-OR-A5JB-01A-11D-A29I-10	3094443	79063945	23467447	326	2569										
TMC3	342125	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr15	81624991	81624991	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	ttccctctgggcttcagaggGggctgtgggtattggaaatt	15	7	2	1	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	TMC3-70	NM_001080532	exon22	c.C3072A	p.P1024P	CAGAGGGGGCTGT	.	276	78	115	0	.	1	1	0	0	0	T	81624991	G	T	81624991	2	4	10	1	0	0	0	0	0	0	0	1	16023	1219	43	3		3	TMC3	15	81624991	Silent	SNP	G	TCGA-OR-A5JB-01A-11D-A29I-10	2561046	81624991	20906401	327	2570										
ZNF592	9640	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr15	85327349	85327349	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	ccaggctcacagacaggcaaGaagcaacagagcacagcact	10	13	1	3	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	ZNF592-96	NM_014630	exon4	c.G1443C	p.K481N	AGGCAAGAAGCAA	.	93	37	68	1	.	1	1	0	0	0	C	85327349	G	C	85327349	3	2	10	1	0	0	0	0	1	0	0	0	18059	933	33	3	1445	3	ZNF592	15	85327349	Missense_Mutation	SNP	G	TCGA-OR-A5JB-01A-11D-A29I-10	3702358	85327349	17204043	328	2571										
AGBL1	123624	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr15	86791011	86791011	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	gcctacgtgcagatccgacgGggcttgctgctctgcctcag	13	14	2	1	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	.	NM_152336	exon6	c.G498T	p.R166R	CCGACGGGGCTTG	.	172	58	80	0	.	0	0	0	0	0	T	86791011	G	T	86791011	2	4	10	1	0	0	0	0	0	0	0	1	375	1219	43	3		3	AGBL1	15	86791011	Silent	SNP	G	TCGA-OR-A5JB-01A-11D-A29I-10	1463662	86791011	15740381	329	2572										
FES	2242	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr15	91436336	91436336	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	gcagtgccctccaggatcctGaagcagtacagccaccccaa	9	16	0	1	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	FES-546	NM_002005	exon15	c.G1833A	p.L611L	GATCCTGAAGCAG	.	148	58	77	0	.	0	0	0	0	0	A	91436336	G	A	91436336	2	1	10	1	0	0	0	0	0	0	0	1	5839	1277	45	3		3	FES	15	91436336	Silent	SNP	G	TCGA-OR-A5JB-01A-11D-A29I-10	4645325	91436336	11095056	330	2573										
CHD2	1106	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr15	93499776	93499776	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	actctttattgtataaaactCtgattgatttcaagtccaac	4	8	3	2	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	CHD2-229	NM_001271	exon16	c.C1897G	p.L633V	AAAACTCTGATTG	.	72	25	52	0	.	0	0	0	0	0	G	93499776	C	G	93499776	3	3	10	1	0	0	0	0	1	0	0	0	3331	912	32	3	1959	3	CHD2	15	93499776	Missense_Mutation	SNP	C	TCGA-OR-A5JB-01A-11D-A29I-10	2063440	93499776	9031616	331	2574										
ADAMTS17	170691	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr15	100636657	100636657	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	gtcctctttggctgcagaccCgatgatgccgtcacagccga	11	14	2	2	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	ADAMTS17-228	NM_139057	exon15	c.G2041T	p.G681W	CAGACCCGATGAT	.	115	29	70	0	.	0	0	0	0	0	A	100636657	C	A	100636657	3	1	10	1	0	0	0	0	1	0	0	0	262	652	23	2	1278	2	ADAMTS17	15	100636657	Missense_Mutation	SNP	C	TCGA-OR-A5JB-01A-11D-A29I-10	7136881	100636657	1894735	332	2575										
CACNA1H	8912	bcgsc.ca	37	chr16	1256150	1256150	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	acggtggcttgtctgtgctgCgcaccttccggctgctgcgt	14	13	1	0	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	CACNA1H-67	NM_021098	exon12	c.C2650A	p.R884S	GTGCTGCGCACCT	.	104	70	23	1	.	0	0	0	0	0	A	1256150	C	A	1256150	3	1	10	1	0	0	0	0	1	0	0	0	2551	768	27	2	2692	2	CACNA1H	16	1256150	Missense_Mutation	SNP	C	TCGA-OR-A5JB-01A-11D-A29I-10		1256150	89098603	333	2576										
PTX4	390667	hgsc.bcm.edu	37	chr16	1537601	1537601	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	ccacgggcagccgcccctccAgagcagccagcctggcgccc	12	21	0	1	rs2667674	byfrequency	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	PTX4-90	NM_001013658	exon2	c.T497C	p.L166P	CCCTCCAGAGCAG	.	16	13	1	0	A|0.928;G|0.072	0	0	0	0	0	G	1537601	A	G	1537601	3	3	10	1	0	0	0	0	1	0	0	0	12858	188	7	4	931	4	PTX4	16	1537601	Missense_Mutation	SNP	A	TCGA-OR-A5JB-01A-11D-A29I-10	281451	1537601	88817152	334	2577										
SRRM2	23524	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	2815642	2815642	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	caaggaaggccagactgtccCgtagaagccgctctgcctca	11	14	2	2	rs146437403	alternate_allele	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	SRRM2-93	NM_016333	exon11	c.C5113A	p.R1705S	CTGTCCCGTAGAA	.	52	29	75	0	C|1.000;T|0.000	15	0	15	0	0	A	2815642	C	A	2815642	3	1	10	1	0	0	0	0	1	0	0	0	15206	652	23	2	5151	2	SRRM2	16	2815642	Missense_Mutation	SNP	C	TCGA-OR-A5JB-01A-11D-A29I-10	1278041	2815642	87539111	335	2578										
GTF3C1	2975	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr16	27523098	27523098	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	taggtctgtgtgagcatatcCcgctcgaacacaatgtccac	9	12	1	1	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	GTF3C1-94	NM_001520	exon7	c.G1098T	p.R366R	CATATCCCGCTCG	.	236	162	209	1	.	2	0	2	0	0	A	27523098	C	A	27523098	2	1	10	1	0	0	0	0	0	0	0	1	6893	610	22	3		3	GTF3C1	16	27523098	Silent	SNP	C	TCGA-OR-A5JB-01A-11D-A29I-10	24707456	27523098	62831655	336	2579										
IRX3	79191	hgsc.bcm.edu	37	chr16	54318528	54318528	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	ccagcagggagagcgggtgcAggcgggggccgggcggtggg	25	9	0	1	rs1450355		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	IRX3-90	NM_024336	exon2	c.T1265C	p.L422P	GGGTGCAGGCGGG	.	6	6	0	0	T|0.035;G|0.004	4	0	4	0	0	G	54318528	A	G	54318528	3	3	10	1	0	0	0	0	1	0	0	0	7866	188	7	4	252	4	IRX3	16	54318528	Missense_Mutation	SNP	A	TCGA-OR-A5JB-01A-11D-A29I-10	26795430	54318528	36036225	337	2580										
SLC12A3	6559	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr16	56899349	56899349	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	tcgatgtggtgcccacatatGagcactatgccaacagcacc	9	13	0	1	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	SLC12A3-155	NM_001126108	exon1	c.G202C	p.E68Q	ACATATGAGCACT	.	162	64	105	0	.	0	0	0	0	0	C	56899349	G	C	56899349	3	2	10	1	0	0	0	0	1	0	0	0	14419	1291	45	3	204	3	SLC12A3	16	56899349	Missense_Mutation	SNP	G	TCGA-OR-A5JB-01A-11D-A29I-10	2580821	56899349	33455404	338	2581										
CCDC135	84229	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr16	57736008	57736008	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	gtgccacatggacctgacgcGggaggtgtgcccactcactg	14	13	1	1	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	CCDC135-90	NM_032269	exon5	c.G665T	p.R222L	TGACGCGGGAGGT	.	263	112	174	0	.	0	0	0	0	0	T	57736008	G	T	57736008	3	4	10	1	0	0	0	0	1	0	0	0	2775	1116	39	2	679	2	CCDC135	16	57736008	Missense_Mutation	SNP	G	TCGA-OR-A5JB-01A-11D-A29I-10	836659	57736008	32618745	339	2582										
DDX28	55794	broad.mit.edu;ucsc.edu;mdanderson.org	37	chr16	68056823	68056823	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	gcgtcgactcttccagccttGagaggctagcggcgcgcgct	14	14	1	1	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	DDX28-226	NM_018380	exon1	c.C283G	p.Q95E	AGCCTTGAGAGGC	.	26	12	11	0	.	9	3	6	0	0	C	68056823	G	C	68056823	3	2	10	1	0	0	0	0	1	0	0	0	4361	1299	45	3	1343	3	DDX28	16	68056823	Missense_Mutation	SNP	G	TCGA-OR-A5JB-01A-11D-A29I-10	10320815	68056823	22297930	340	2583										
ZFHX3	463	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr16	72829226	72829226	+	Frame_Shift_Del	DEL	G	G	-													0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	gctcttgctgctgcagctctGgctttggttgtccttgcttt					novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	ZFHX3-72	NM_006885	exon9	c.7355delC	p.P2452fs	AGCTCTGGCTTTG	.	70	14	48	0	.	0	0	0	0	0	-	72829226	G	-	72829226	7	5	10	1	0	1	0	1	0	0	0	0	17671	1348	47	0	3764	0	ZFHX3	16	72829226	Frame_Shift_Del	DEL	G	TCGA-OR-A5JB-01A-11D-A29I-10	4772403	72829226	17525527	341	2584	20	3								
ZFHX3	463	hgsc.bcm.edu	37	chr16	72829227	72829228	+	Frame_Shift_Del	DEL	GC	GC	-													0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	ctcttgctgctgcagctctgGctttggttgtccttgctttt					novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	GC	GC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	ZFHX3-72	NM_006885	exon9	c.7353_7354del	p.2451_2452del	GCTCTGGCTTTGG	.	70	0	47	0	.	0	0	0	0	0	-	72829228	GC	-	72829227	7	5	10	1	0	1	0	1	0	0	0	0	17671	1203	42	0	3765	0	ZFHX3	16	72829227	Frame_Shift_Del	DEL	GC	TCGA-OR-A5JB-01A-11D-A29I-10	1	72829227	17525526	342	2585	20	3								
ZFHX3	463	hgsc.bcm.edu;bcgsc.ca	37	chr16	72829228	72829228	+	Silent	SNP	C	C	T													0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	tcttgctgctgcagctctggCtttggttgtccttgcttttc					novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	ZFHX3-72	NM_006885	exon9	c.G7353A	p.K2451K	CTCTGGCTTTGGT	.	68	14	47	0	.	0	0	0	0	0	T	72829228	C	T	72829228	2	4	10	1	0	0	0	0	0	0	0	1	17671	796	28	3		3	ZFHX3	16	72829228	Silent	SNP	C	TCGA-OR-A5JB-01A-11D-A29I-10	1	72829228	17525525	343	2586	20	3								
CDH13	1012	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr16	83378568	83378568	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	gacaaccgaccgatctttcgGgaaggcccctacatcggcca	10	15	1	0	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	CDH13-67	NM_001220488	exon7	c.G879T	p.R293R	CTTTCGGGAAGGC	.	116	48	77	0	.	1	0	1	0	0	T	83378568	G	T	83378568	2	4	10	1	0	0	0	0	0	0	0	1	3105	1219	43	3		3	CDH13	16	83378568	Silent	SNP	G	TCGA-OR-A5JB-01A-11D-A29I-10	10549340	83378568	6976185	344	2587										
ADAD2	161931	hgsc.bcm.edu	37	chr16	84224967	84224967	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	ccaggcccaaagtgcctgggGgcccgcgcccgcgcccgcga	15	19	0	0	rs8044695	byfrequency	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	ADAD2-68	NM_001145400	exon1	c.G131A	p.G44E	CCTGGGGGCCCGC	.	7	7	0	0	G|0.292;A|0.708	0	0	0	0	0	A	84224967	G	A	84224967	3	1	10	1	0	0	0	0	1	0	0	0	232	1232	43	3	133	3	ADAD2	16	84224967	Missense_Mutation	SNP	G	TCGA-OR-A5JB-01A-11D-A29I-10	846399	84224967	6129786	345	2588										
ZFPM1	161882	hgsc.bcm.edu	37	chr16	88599659	88599659	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	tcgccaggactggacagaaaGgccctggccgaggccaccaa	13	14	0	1	rs71395304	byfrequency	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	ZFPM1-90	NM_153813	exon10	c.G1293T	p.K431N	CAGAAAGGCCCTG	.	24	15	1	0	G|0.858;T|0.142	6	4	2	0	0	T	88599659	G	T	88599659	3	4	10	1	0	0	0	0	1	0	0	0	17694	991	35	3	1331	3	ZFPM1	16	88599659	Missense_Mutation	SNP	G	TCGA-OR-A5JB-01A-11D-A29I-10	4374692	88599659	1755094	346	2589										
RPL13	6137	hgsc.bcm.edu	37	chr16	89627671	89627671	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	gccaaggcgcgccgcatcgcCccgcgccccgcgtcgggtcc	14	21	0	0	rs174035	bycluster;byfrequency;by1000genomes	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	RPL13-90	NM_001243131	exon3	c.C141T	p.A47A	CATCGCCCCGCGC	.	11	8	0	0	C|0.846;T|0.154	1030	275	754	0	1	T	89627671	C	T	89627671	2	4	10	1	0	0	0	0	0	0	0	1	13594	610	22	3		3	RPL13	16	89627671	Silent	SNP	C	TCGA-OR-A5JB-01A-11D-A29I-10	1028012	89627671	727082	347	2590										
GAS8	2622	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr16	90099238	90099238	+	Missense_Mutation	SNP	A	A	T													0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	acagaaagagcaccgcatacAggagagtgtgctgcgcaagg					novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	GAS8-227	NM_001481	exon4	c.A401T	p.Q134L	GCATACAGGAGAG	.	383	93	190	0	.	11	11	0	0	0	T	90099238	A	T	90099238	3	4	10	1	0	0	0	0	1	0	0	0	6271	188	7	5	415	5	GAS8	16	90099238	Missense_Mutation	SNP	A	TCGA-OR-A5JB-01A-11D-A29I-10	471567	90099238	255515	348	2591	21	2								
GAS8	2622	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr16	90099240	90099240	+	Nonsense_Mutation	SNP	G	G	T													0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	agaaagagcaccgcatacagGagagtgtgctgcgcaaggac					novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	GAS8-227	NM_001481	exon4	c.G403T	p.E135X	ATACAGGAGAGTG	.	384	94	184	0	.	11	11	0	0	0	T	90099240	G	T	90099240	4	4	10	1	0	0	0	0	0	1	0	0	6271	1175	41	3	417	3	GAS8	16	90099240	Nonsense_Mutation	SNP	G	TCGA-OR-A5JB-01A-11D-A29I-10	2	90099240	255513	349	2592	21	2								
TP53	7157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	7577580	7577580	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	aactgttacacatgtagttgTagtggatggtggtacagtca	12	5	1	0	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	TP53-70225	NM_000546	exon7	c.A701G	p.Y234C	TAGTTGTAGTGGA	.	203	94	204	2	.	6	0	6	0	0	C	7577580	T	C	7577580	3	2	10	1	0	0	0	0	1	0	0	0	16419	1638	57	4	589	4	TP53	17	7577580	Missense_Mutation	SNP	T	TCGA-OR-A5JB-01A-11D-A29I-10		7577580	73617630	350	2593										
RCVRN	5957	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	9801437	9801437	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	cgttcttcatcttttccttcActttttgaggctcaaactgg	6	11	5	1	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	RCVRN-90	NM_002903	exon3	c.T578A	p.V193E	TCCTTCACTTTTT	.	115	64	114	0	.	0	0	0	0	0	T	9801437	A	T	9801437	3	4	10	1	0	0	0	0	1	0	0	0	13221	159	6	5	28	5	RCVRN	17	9801437	Missense_Mutation	SNP	A	TCGA-OR-A5JB-01A-11D-A29I-10	2223857	9801437	71393773	351	2594										
MYH2	4620	mdanderson.org	37	chr17	10432658	10432658	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	ttctttcttacttactttttGagcttttcatcaagttgctg	5	8	4	1	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	MYH2-194	NM_017534	exon25	c.C3258G	p.L1086L	CTTTTTGAGCTTT	.	10	5	30	1	.	0	0	0	0	0	C	10432658	G	C	10432658	2	2	10	1	0	0	0	0	0	0	0	1	10063	1277	45	3		3	MYH2	17	10432658	Silent	SNP	G	TCGA-OR-A5JB-01A-11D-A29I-10	631221	10432658	70762552	352	2595										
TAOK1	57551	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	27807461	27807461	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	gactttggctctgcttccatGgcatcacctgccaattcctt	7	14	2	0	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	TAOK1-521	NM_025142	exon7	c.G525T	p.M175I	TTCCATGGCATCA	.	66	37	103	1	.	1	0	1	0	0	T	27807461	G	T	27807461	3	4	10	1	0	0	0	0	1	0	0	0	15584	1348	47	3	547	3	TAOK1	17	27807461	Missense_Mutation	SNP	G	TCGA-OR-A5JB-01A-11D-A29I-10	17374803	27807461	53387749	353	2596										
NF1	4763	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	29560226	29560226	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	ccaatgtggttccttgttctCagtgggtaagtgattagagt	12	6	1	2	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	NF1-3353	NM_000267	exon27	c.C3703T	p.Q1235X	TGTTCTCAGTGGG	.	100	66	93	0	.	0	0	0	0	0	T	29560226	C	T	29560226	4	4	10	1	0	0	0	0	0	1	0	0	10385	827	29	3	3870	3	NF1	17	29560226	Nonsense_Mutation	SNP	C	TCGA-OR-A5JB-01A-11D-A29I-10	1752765	29560226	51634984	354	2597										
KRTAP4-7	100132476	hgsc.bcm.edu	37	chr17	39240804	39240805	+	Missense_Mutation	DNP	CG	CG	AT													0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	gctgccgccccagctgctgcCgcccctgctgctgcctgcgt					novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	CG	CG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	.	NM_033061	exon1	c.G347T	p.R116I	GCTGCCGCCCCTG	.	162	0	46	0	.	0	0	0	0	0	AT	39240805	CG	AT	39240804	3	1	10	1	0	0	0	0	1	0	0	0	8577	652	23	2	348	2	KRTAP4-7	17	39240804	Missense_Mutation	DNP	CG	TCGA-OR-A5JB-01A-11D-A29I-10	9680578	39240804	41954406	355	2598										
PSMC5	5705	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	61905533	61905533	+	Silent	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	gggaaggcaggcagcggactCcgccaatattatctgtccaa	12	11	1	0	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	PSMC5-178	NM_002805	exon2	c.C60A	p.L20L	CGGACTCCGCCAA	.	125	97	81	0	.	136	5	131	0	0	A	61905533	C	A	61905533	2	1	10	1	0	0	0	0	0	0	0	1	12722	842	30	3		3	PSMC5	17	61905533	Silent	SNP	C	TCGA-OR-A5JB-01A-11D-A29I-10	22664729	61905533	19289677	356	2599										
SPHK1	8877	hgsc.bcm.edu	37	chr17	74381720	74381720	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	ggcagcgggagccgcgggtcGaggttatggatccaggtttg	19	8	0	0	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	SPHK1-1107	NM_182965	exon2	c.G253A	p.E85K	CGGGTCGAGGTTA	.	14	8	4	0	.	2	2	0	0	0	A	74381720	G	A	74381720	3	1	10	1	0	0	0	0	1	0	0	0	15083	1059	37	1	259	1	SPHK1	17	74381720	Missense_Mutation	SNP	G	TCGA-OR-A5JB-01A-11D-A29I-10	12476187	74381720	6813490	357	2600										
P4HB	5034	hgsc.bcm.edu	37	chr17	79818287	79818287	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	caggacgtggtcctcctcctCgggggcgtcggcgcgcacca	15	16	0	0	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	P4HB-46	NM_000918	exon1	c.G61T	p.E21X	CCTCCTCGGGGGC	.	48	22	5	0	.	97	83	14	0	0	A	79818287	C	A	79818287	4	1	10	1	0	0	0	0	0	1	0	0	11388	893	31	2	1509	2	P4HB	17	79818287	Nonsense_Mutation	SNP	C	TCGA-OR-A5JB-01A-11D-A29I-10	5436567	79818287	1376923	358	2601										
ASXL3	80816	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr18	31158619	31158619	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	aaagacaagaggaagaagaaGgaccgcacctgggccgaggc	15	9	0	4	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	ASXL3-49	NM_030632	exon1	c.G24T	p.K8N	GAAGAAGGACCGC	.	105	61	43	0	.	0	0	0	0	0	T	31158619	G	T	31158619	3	4	10	1	0	0	0	0	1	0	0	0	1069	991	35	3	26	3	ASXL3	18	31158619	Missense_Mutation	SNP	G	TCGA-OR-A5JB-01A-11D-A29I-10		31158619	46918629	359	2602										
SETBP1	26040	mdanderson.org	37	chr18	42530098	42530098	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	cttcctttgcaaaggcccagGgtaagaaaggcagtgcaggg	14	9	0	1	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	SETBP1-155	NM_015559	exon4	c.G793T	p.G265C	GCCCAGGGTAAGA	.	14	9	24	1	.	0	0	0	0	0	T	42530098	G	T	42530098	3	4	10	1	0	0	0	0	1	0	0	0	14164	1232	43	3	996	3	SETBP1	18	42530098	Missense_Mutation	SNP	G	TCGA-OR-A5JB-01A-11D-A29I-10	11371479	42530098	35547150	360	2603										
SETBP1	26040	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr18	42531994	42531994	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	ggaggtactcttttgatttcTgctccctggacaacccggag	11	11	2	1	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	SETBP1-155	NM_015559	exon4	c.T2689A	p.C897S	GATTTCTGCTCCC	.	47	26	72	0	.	0	0	0	0	0	A	42531994	T	A	42531994	3	1	10	1	0	0	0	0	1	0	0	0	14164	1580	55	5	2892	5	SETBP1	18	42531994	Missense_Mutation	SNP	T	TCGA-OR-A5JB-01A-11D-A29I-10	1896	42531994	35545254	361	2604										
SETBP1	26040	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr18	42532100	42532100	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	caactttctggcccacgaaaGcctcaagaagccaaagcaca	7	14	2	1	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	SETBP1-155	NM_015559	exon4	c.G2795T	p.S932I	ACGAAAGCCTCAA	.	18	10	64	0	.	0	0	0	0	0	T	42532100	G	T	42532100	3	4	10	1	0	0	0	0	1	0	0	0	14164	971	34	3	2998	3	SETBP1	18	42532100	Missense_Mutation	SNP	G	TCGA-OR-A5JB-01A-11D-A29I-10	106	42532100	35545148	362	2605										
SERPINB11	89778	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr18	61390440	61390440	+	RNA	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	aaccaagggcctatatttatCaaaagccatccacaagtcat	5	11	2	0	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	SERPINB11-67	.	.	.	.	ATTTATCAAAAGC	.	125	70	174	1	.	0	0	0	0	0	G	61390440	C	G	61390440	1	3	10	0	1	0	0	0	0	0	0	0	14133	838	29	3		3	SERPINB11	18	61390440	RNA	SNP	C	TCGA-OR-A5JB-01A-11D-A29I-10	18858340	61390440	16686808	363	2606										
ODF3L2	284451	hgsc.bcm.edu	37	chr19	464080	464080	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	gcgctggcggtaggtgtttgCgtccgggctgtcgtactggc	18	10	0	0	rs76592524		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	ODF3L2-68	NM_182577	exon4	c.G634A	p.A212T	TGTTTGCGTCCGG	.	7	5	0	0	C|0.969;T|0.031	0	0	0	0	0	T	464080	C	T	464080	3	4	10	1	0	0	0	0	1	0	0	0	10861	768	27	1	239	1	ODF3L2	19	464080	Missense_Mutation	SNP	C	TCGA-OR-A5JB-01A-11D-A29I-10		464080	58664903	364	2607										
GRIN3B	116444	broad.mit.edu	37	chr19	1008889	1008889	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	ccctcaacacggagccaccaGaggggtcgaaggaggagacg	15	12	1	2	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	GRIN3B-90	NM_138690	exon8	c.G2665T	p.E889X	CCACCAGAGGGGT	.	118	4	77	0	.	2	2	0	0	0	T	1008889	G	T	1008889	4	4	10	1	0	0	0	0	0	1	0	0	6805	943	33	3	2695	3	GRIN3B	19	1008889	Nonsense_Mutation	SNP	G	TCGA-OR-A5JB-01A-11D-A29I-10	544809	1008889	58120094	365	2608										
STK11	6794	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	1220640	1220640	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	gccagggctccccggctttcCagccgcccgagattgccaac	11	18	0	1	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	STK11-5227	NM_000455	exon5	c.C658T	p.Q220X	GCTTTCCAGCCGC	.	73	48	28	0	.	14	8	6	0	0	T	1220640	C	T	1220640	4	4	10	1	0	0	0	0	0	1	0	0	15324	595	21	3	676	3	STK11	19	1220640	Nonsense_Mutation	SNP	C	TCGA-OR-A5JB-01A-11D-A29I-10	211751	1220640	57908343	366	2609										
ADAT3	113179	hgsc.bcm.edu	37	chr19	1912163	1912163	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	gggagcccggagcctgagccGgcgccgtggcaggccctccc	17	17	0	1	rs199915192		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	ADAT3-154	NM_138422	exon2	c.G117A	p.P39P	TGAGCCGGCGCCG	.	27	22	1	0	G|0.996;A|0.004	0	0	0	0	0	A	1912163	G	A	1912163	2	1	10	1	0	0	0	0	0	0	0	1	286	1103	39	1		1	ADAT3	19	1912163	Silent	SNP	G	TCGA-OR-A5JB-01A-11D-A29I-10	691523	1912163	57216820	367	2610										
S1PR4	8698	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	3179663	3179663	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	tacctgcggggcatggactgGatcctggccctggccgtcct	14	14	0	0	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	S1PR4-591	NM_003775	exon1	c.G873T	p.W291C	GGACTGGATCCTG	.	121	68	103	0	.	3	3	0	0	0	T	3179663	G	T	3179663	3	4	10	1	0	0	0	0	1	0	0	0	13831	1183	41	3	875	3	S1PR4	19	3179663	Missense_Mutation	SNP	G	TCGA-OR-A5JB-01A-11D-A29I-10	1267500	3179663	55949320	368	2611										
MUC16	94025	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	9059570	9059570	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	gtctcttcagagatgctggtCtccatcaacccaggagtcag	10	12	5	1	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	MUC16-566	NM_024690	exon3	c.G27876C	p.E9292D	GCTGGTCTCCATC	.	78	39	120	1	.	0	0	0	0	0	G	9059570	C	G	9059570	3	3	10	1	0	0	0	0	1	0	0	0	10001	912	32	3	15975	3	MUC16	19	9059570	Missense_Mutation	SNP	C	TCGA-OR-A5JB-01A-11D-A29I-10	5879907	9059570	50069413	369	2612										
MUC16	94025	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr19	9060440	9060440	+	Frame_Shift_Del	DEL	G	G	-													0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	gtgctggtctcccttggtgtGggggtcagggtggatgttga					novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	MUC16-566	NM_024690	exon3	c.27006delC	p.P9002fs	TGGTGTGGGGGTC	.	135	73	169	0	.	0	0	0	0	0	-	9060440	G	-	9060440	7	5	10	1	0	1	0	1	0	0	0	0	10001	1335	47	0	16845	0	MUC16	19	9060440	Frame_Shift_Del	DEL	G	TCGA-OR-A5JB-01A-11D-A29I-10	870	9060440	50068543	370	2613										
MUC16	94025	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	9071377	9071377	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	aagaggagaggaggggatgcTctgtggtgatgtggaggaaa	20	2	1	3	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	MUC16-566	NM_024690	exon3	c.A16069T	p.S5357C	GGATGCTCTGTGG	.	158	101	191	0	.	0	0	0	0	0	A	9071377	T	A	9071377	3	1	10	1	0	0	0	0	1	0	0	0	10001	1551	54	5	27782	5	MUC16	19	9071377	Missense_Mutation	SNP	T	TCGA-OR-A5JB-01A-11D-A29I-10	10937	9071377	50057606	371	2614										
MUC16	94025	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	9080534	9080534	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	ggcttgacatctttatggtgGtcactagcgttccatcagtt	10	9	3	1	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	MUC16-566	NM_024690	exon2	c.C9497A	p.T3166N	ATGGTGGTCACTA	.	124	74	123	0	.	0	0	0	0	0	T	9080534	G	T	9080534	3	4	10	1	0	0	0	0	1	0	0	0	10001	1261	44	3	34358	3	MUC16	19	9080534	Missense_Mutation	SNP	G	TCGA-OR-A5JB-01A-11D-A29I-10	9157	9080534	50048449	372	2615										
EMR3	84658	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr19	14749012	14749012	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	actgggaacatgatccacttCatgagtctattgatgcttga	9	8	2	4	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	EMR3-528	NM_032571	exon11	c.G1389T	p.M463I	CCACTTCATGAGT	.	220	15	274	0	.	0	0	0	0	0	A	14749012	C	A	14749012	3	1	10	1	0	0	0	0	1	0	0	0	5119	826	29	3	593	3	EMR3	19	14749012	Missense_Mutation	SNP	C	TCGA-OR-A5JB-01A-11D-A29I-10	5668478	14749012	44379971	373	2616										
CPAMD8	27151	bcgsc.ca	37	chr19	17108135	17108135	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	tcacgcagatgtcgaagtccCgggagccgaggatctggagg	16	10	2	1	rs3745340	byfrequency	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	CPAMD8-141	NM_015692	exon11	c.G1022A	p.R341Q	AAGTCCCGGGAGC	.	329	11	318	2	C|0.647;T|0.353	0	0	0	0	0	T	17108135	C	T	17108135	3	4	10	1	0	0	0	0	1	0	0	0	3801	652	23	1	4904	1	CPAMD8	19	17108135	Missense_Mutation	SNP	C	TCGA-OR-A5JB-01A-11D-A29I-10	2359123	17108135	42020848	374	2617										
SLC27A1	376497	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr19	17598000	17598000	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	cagcggtggccgaagtgagcGggcatctggggaaaagtttg	18	7	1	1	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	SLC27A1-226	NM_198580	exon3	c.G580T	p.G194W	GTGAGCGGGCATC	.	48	38	38	0	.	0	0	0	0	0	T	17598000	G	T	17598000	3	4	10	1	0	0	0	0	1	0	0	0	14560	1116	39	2	590	2	SLC27A1	19	17598000	Missense_Mutation	SNP	G	TCGA-OR-A5JB-01A-11D-A29I-10	489865	17598000	41530983	375	2618										
SLC5A5	6528	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	chr19	17994715	17994715	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	tcgctgtgggtggccttgggCgccacgctgtacccacccag	14	15	0	0	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	SLC5A5-93	NM_000453	exon12	c.C1386A	p.G462G	CTTGGGCGCCACG	.	44	27	10	0	.	0	0	0	0	0	A	17994715	C	A	17994715	2	1	10	1	0	0	0	0	0	0	0	1	14703	755	27	2		2	SLC5A5	19	17994715	Silent	SNP	C	TCGA-OR-A5JB-01A-11D-A29I-10	396715	17994715	41134268	376	2619										
ZNF536	9745	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	chr19	30935331	30935331	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	gcaagttcaagaagcgcgagGagctggaccgccacatccgc	13	13	1	1	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	ZNF536-144	NM_014717	exon2	c.G862T	p.E288X	CGCGAGGAGCTGG	.	55	26	17	0	.	0	0	0	0	0	T	30935331	G	T	30935331	4	4	10	1	0	0	0	0	0	1	0	0	18011	1175	41	3	864	3	ZNF536	19	30935331	Nonsense_Mutation	SNP	G	TCGA-OR-A5JB-01A-11D-A29I-10	12940616	30935331	28193652	377	2620										
PDCD5	9141	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	33078192	33078192	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	aagtaatggactctgatgaaGatgacgattattgaactaca	9	5	1	5	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	PDCD5-228	NM_004708	exon6	c.G364C	p.D122H	GATGAAGATGACG	.	317	150	304	1	.	348	183	165	0	0	C	33078192	G	C	33078192	3	2	10	1	0	0	0	0	1	0	0	0	11651	942	33	3	386	3	PDCD5	19	33078192	Missense_Mutation	SNP	G	TCGA-OR-A5JB-01A-11D-A29I-10	2142861	33078192	26050791	378	2621										
HAUS5	23354	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	36110596	36110596	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	gggagctgctgcgctgtctgGaggaggaagtccggcatttg	18	8	1	0	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	HAUS5-68	NM_015302	exon15	c.G1342A	p.E448K	TGTCTGGAGGAGG	.	235	68	145	0	.	5	2	3	0	0	A	36110596	G	A	36110596	3	1	10	1	0	0	0	0	1	0	0	0	6990	1175	41	3	1400	3	HAUS5	19	36110596	Missense_Mutation	SNP	G	TCGA-OR-A5JB-01A-11D-A29I-10	3032404	36110596	23018387	379	2622										
LRFN3	79414	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	36435463	36435463	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	cctgcaggatgatcccggcgGagagccgctcgttcctgctg	14	14	0	2	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	LRFN3-90	NM_024509	exon3	c.G1429A	p.E477K	CCGGCGGAGAGCC	.	78	26	18	0	.	5	3	2	0	0	A	36435463	G	A	36435463	3	1	10	1	0	0	0	0	1	0	0	0	8966	1175	41	3	1435	3	LRFN3	19	36435463	Missense_Mutation	SNP	G	TCGA-OR-A5JB-01A-11D-A29I-10	324867	36435463	22693520	380	2623										
ZNF567	163081	broad.mit.edu;bcgsc.ca	37	chr19	37211001	37211001	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	gtgaatgtggaaagtccttcCgccagaagacaacccttgta	10	10	0	3	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	ZNF567-90	NM_152603	exon4	c.C1282T	p.R428C	TCCTTCCGCCAGA	.	126	6	85	0	.	5	5	0	0	0	T	37211001	C	T	37211001	3	4	10	1	0	0	0	0	1	0	0	0	18035	652	23	1	1292	1	ZNF567	19	37211001	Missense_Mutation	SNP	C	TCGA-OR-A5JB-01A-11D-A29I-10	775538	37211001	21917982	381	2624										
ZNF383	163087	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	37734341	37734341	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	gaatgtcttgaatgtgggaaGgcctttactcagaactcaca	10	8	3	2	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	ZNF383-92	NM_152604	exon5	c.G1203T	p.K401N	TGGGAAGGCCTTT	.	55	25	74	0	.	8	3	5	0	0	T	37734341	G	T	37734341	3	4	10	1	0	0	0	0	1	0	0	0	17911	991	35	3	1217	3	ZNF383	19	37734341	Missense_Mutation	SNP	G	TCGA-OR-A5JB-01A-11D-A29I-10	523340	37734341	21394642	382	2625										
ZNF793	390927	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	38027960	38027960	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	ctgatcttttttcttcaatcCagagccctagtaactggaac	6	11	3	2	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	ZNF793-68	NM_001013659	exon8	c.C400T	p.Q134X	TCAATCCAGAGCC	.	39	16	73	0	.	0	0	0	0	0	T	38027960	C	T	38027960	4	4	10	1	0	0	0	0	0	1	0	0	18202	595	21	3	414	3	ZNF793	19	38027960	Nonsense_Mutation	SNP	C	TCGA-OR-A5JB-01A-11D-A29I-10	293619	38027960	21101023	383	2626										
RYR1	6261	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	39019290	39019290	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	tacaaggctgcatggatcctGactgaagaccacagttttga	10	9	0	4	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	RYR1-100	NM_000540	exon75	c.G10989A	p.L3663L	GATCCTGACTGAA	.	483	153	358	0	.	0	0	0	0	0	A	39019290	G	A	39019290	2	1	10	1	0	0	0	0	0	0	0	1	13803	1277	45	3		3	RYR1	19	39019290	Silent	SNP	G	TCGA-OR-A5JB-01A-11D-A29I-10	991330	39019290	20109693	384	2627										
RYR1	6261	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	39038919	39038919	+	Silent	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	cggcagatggtggacatgctCgtggaatcctcatccaatgt	12	10	1	1	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	RYR1-100	NM_000540	exon89	c.C12141A	p.L4047L	CATGCTCGTGGAA	.	398	153	261	1	.	0	0	0	0	0	A	39038919	C	A	39038919	2	1	10	1	0	0	0	0	0	0	0	1	13803	871	31	2		2	RYR1	19	39038919	Silent	SNP	C	TCGA-OR-A5JB-01A-11D-A29I-10	19629	39038919	20090064	385	2628										
PRX	57716	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	40901699	40901699	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	gtctagctccactgaaggcaGagtgagagaggggacaccca	14	10	1	4	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	PRX-92	NM_181882	exon7	c.C2560G	p.L854V	AAGGCAGAGTGAG	.	82	28	69	0	.	0	0	0	0	0	C	40901699	G	C	40901699	3	2	10	1	0	0	0	0	1	0	0	0	12674	933	33	3	1829	3	PRX	19	40901699	Missense_Mutation	SNP	G	TCGA-OR-A5JB-01A-11D-A29I-10	1862780	40901699	18227284	386	2629										
GRIK5	2901	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr19	42507538	42507538	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	atgaattccatgaccgccacGaagacagcaatgatgaggcc	10	11	0	5	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	GRIK5-90	NM_002088	exon18	c.C2460T	p.F820F	CGCCACGAAGACA	.	215	13	99	0	.	0	0	0	0	0	A	42507538	G	A	42507538	2	1	10	1	0	0	0	0	0	0	0	1	6798	1049	37	1		1	GRIK5	19	42507538	Silent	SNP	G	TCGA-OR-A5JB-01A-11D-A29I-10	1605839	42507538	16621445	387	2630										
CBLC	23624	hgsc.bcm.edu	37	chr19	45281452	45281452	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	atctacctggccaatctggaGgccaagagcaggcaggtggc	14	11	2	1	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	CBLC-849	NM_001130852	exon1	c.G264T	p.E88D	TCTGGAGGCCAAG	.	39	4	14	0	.	0	0	0	0	0	T	45281452	G	T	45281452	3	4	10	1	0	0	0	0	1	0	0	0	2708	991	35	3	266	3	CBLC	19	45281452	Missense_Mutation	SNP	G	TCGA-OR-A5JB-01A-11D-A29I-10	2773914	45281452	13847531	388	2631										
APOE	348	hgsc.bcm.edu	37	chr19	45411941	45411941	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	gcgcggacatggaggacgtgTgcggccgcctggtgcagtac	18	11	0	0	rs429358	byfrequency	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	APOE-90	NM_000041	exon4	c.T388C	p.C130R	GACGTGTGCGGCC	.	33	12	1	0	T|0.861;C|0.139	135	70	65	0	0	C	45411941	T	C	45411941	3	2	10	1	0	0	0	0	1	0	0	0	802	1696	59	4	398	4	APOE	19	45411941	Missense_Mutation	SNP	T	TCGA-OR-A5JB-01A-11D-A29I-10	130489	45411941	13717042	389	2632										
DHX34	9704	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr19	47878770	47878770	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	gctggggcccaggccgcgcaGgtaggggacagctacagtcg	18	12	0	0	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	DHX34-231	NM_014681	exon10	c.G2112T	p.Q704H	CGCGCAGGTAGGG	.	26	10	11	0	.	10	7	3	0	0	T	47878770	G	T	47878770	3	4	10	1	0	0	0	0	1	0	0	0	4518	991	35	3	2146	3	DHX34	19	47878770	Missense_Mutation	SNP	G	TCGA-OR-A5JB-01A-11D-A29I-10	2466829	47878770	11250213	390	2633										
GLTSCR2	29997	hgsc.bcm.edu	37	chr19	48258037	48258037	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	gagggggagccaggccagggCgaggggccggaggctgggga	25	8	0	0	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	GLTSCR2-514	NM_015710	exon8	c.C942T	p.G314G	CCAGGGCGAGGGG	.	45	18	3	0	.	285	141	143	1	0	T	48258037	C	T	48258037	2	4	10	1	0	0	0	0	0	0	0	1	6495	755	27	1		1	GLTSCR2	19	48258037	Silent	SNP	C	TCGA-OR-A5JB-01A-11D-A29I-10	379267	48258037	10870946	391	2634										
GLTSCR2	29997	hgsc.bcm.edu	37	chr19	48258717	48258717	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	ggcggagctggcgcggcggcAgaggcggcggcaggcgcggc	24	12	0	1	rs1804994	byfrequency	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	GLTSCR2-514	NM_015710	exon9	c.A1166G	p.Q389R	GGCGGCAGAGGCG	.	4	4	0	0	A|0.308;G|0.692	4	0	4	0	0	G	48258717	A	G	48258717	3	3	10	1	0	0	0	0	1	0	0	0	6495	188	7	4	1200	4	GLTSCR2	19	48258717	Missense_Mutation	SNP	A	TCGA-OR-A5JB-01A-11D-A29I-10	680	48258717	10870266	392	2635										
LMTK3	114783	hgsc.bcm.edu	37	chr19	48994785	48994785	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	gcctggacgctcagctcgttGgttggcgtctcctgtgaagg	15	11	2	1	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	LMTK3-1357	NM_001080434	exon14	c.C4191A	p.T1397T	CTCGTTGGTTGGC	.	46	4	25	0	.	0	0	0	0	0	T	48994785	G	T	48994785	2	4	10	1	0	0	0	0	0	0	0	1	8884	1335	47	3		3	LMTK3	19	48994785	Silent	SNP	G	TCGA-OR-A5JB-01A-11D-A29I-10	736068	48994785	10134198	393	2636										
SPHK2	56848	hgsc.bcm.edu	37	chr19	49132867	49132867	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	cctgggctgtccgcagctggGctacgccgcggcccgtgcct	15	17	0	0	rs61751862	byfrequency	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	SPHK2-658	NM_020126	exon7	c.G1802C	p.G601A	AGCTGGGCTACGC	.	135	62	1	0	G|0.994;C|0.006	10	3	7	0	0	C	49132867	G	C	49132867	3	2	10	1	0	0	0	0	1	0	0	0	15084	1203	42	3	1824	3	SPHK2	19	49132867	Missense_Mutation	SNP	G	TCGA-OR-A5JB-01A-11D-A29I-10	138082	49132867	9996116	394	2637										
POLD1	5424	mdanderson.org	37	chr19	50905080	50905080	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	gcccccaccatcccgcggctCcgtgcctgtgctccgcgcct	10	22	0	0	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	POLD1-840	NM_002691	exon4	c.C362T	p.S121F	GCGGCTCCGTGCC	.	88	40	25	1	.	5	1	4	0	0	T	50905080	C	T	50905080	3	4	10	1	0	0	0	0	1	0	0	0	12219	855	30	3	372	3	POLD1	19	50905080	Missense_Mutation	SNP	C	TCGA-OR-A5JB-01A-11D-A29I-10	1772213	50905080	8223903	395	2638										
POLD1	5424	broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr19	50918779	50918779	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	gatatctcccagctggtcatCaccaaggagctgacccgcgc	10	15	3	1	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	POLD1-840	NM_002691	exon21	c.C2649T	p.I883I	GGTCATCACCAAG	.	445	142	157	1	.	44	24	20	0	0	T	50918779	C	T	50918779	2	4	10	1	0	0	0	0	0	0	0	1	12219	816	29	3		3	POLD1	19	50918779	Silent	SNP	C	TCGA-OR-A5JB-01A-11D-A29I-10	13699	50918779	8210204	396	2639										
LIM2	3982	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	51890472	51890473	+	Missense_Mutation	DNP	CC	CC	AA													0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	gtgtccttgggccccgaggtCcgccctgctctttccccagg					novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	CC	CC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	LIM2-90	NM_030657	exon2	c.G225T	p.D76Y	GAGGTCCGCCCTG	.	79	5	67	0	C|0.999;T|0.001	0	0	0	0	0	AA	51890473	CC	AA	51890472	3	1	10	1	0	0	0	0	1	0	0	0	8818	855	30	3	437	3	LIM2	19	51890472	Missense_Mutation	DNP	CC	TCGA-OR-A5JB-01A-11D-A29I-10	971693	51890472	7238511	397	2640										
FPR1	2357	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	52249798	52249798	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	gtgaggagcagagccatcacCcagggcccaatgatcacctt	11	13	2	3	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	FPR1-524	NM_001193306	exon3	c.G450T	p.W150C	CATCACCCAGGGC	.	242	93	197	0	.	10	8	2	0	0	A	52249798	C	A	52249798	3	1	10	1	0	0	0	0	1	0	0	0	6057	624	22	3	606	3	FPR1	19	52249798	Missense_Mutation	SNP	C	TCGA-OR-A5JB-01A-11D-A29I-10	359326	52249798	6879185	398	2641										
VN1R2	317701	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	53762456	53762456	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	gatgttttgtgtctggggctCatgctctgggccagcagctc	14	10	3	0	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	VN1R2-90	NM_173856	exon1	c.C828T	p.L276L	GGGGCTCATGCTC	.	181	63	138	2	.	0	0	0	0	0	T	53762456	C	T	53762456	2	4	10	1	0	0	0	0	0	0	0	1	17217	813	29	3		3	VN1R2	19	53762456	Silent	SNP	C	TCGA-OR-A5JB-01A-11D-A29I-10	1512658	53762456	5366527	399	2642										
LILRB5	10990	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	54756391	54756391	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	tgggctctggccccgcagccCctgcaggacggtagaaatgg	15	13	1	1	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	LILRB5-92	NM_001081442	exon10	c.G1496T	p.G499V	GCAGCCCCTGCAG	.	55	32	39	0	.	19	19	0	0	0	A	54756391	C	A	54756391	3	1	10	1	0	0	0	0	1	0	0	0	8817	623	22	3	295	3	LILRB5	19	54756391	Missense_Mutation	SNP	C	TCGA-OR-A5JB-01A-11D-A29I-10	993935	54756391	4372592	400	2643										
PPP1R12C	54776	hgsc.bcm.edu	37	chr19	55628609	55628609	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	acctggtgcagggcgctgatAccgtcggcgttggtggagtc	17	10	0	1	rs66707428		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	PPP1R12C-227	NM_017607	exon1	c.T303C	p.G101G	GCTGATACCGTCG	.	14	5	0	0	A|0.808;G|0.192	3	2	1	0	0	G	55628609	A	G	55628609	2	3	10	1	0	0	0	0	0	0	0	1	12388	378	14	4		4	PPP1R12C	19	55628609	Silent	SNP	A	TCGA-OR-A5JB-01A-11D-A29I-10	872218	55628609	3500374	401	2644										
ZNF628	89887	hgsc.bcm.edu;broad.mit.edu	37	chr19	55993021	55993021	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	ctacccgtgcccggactgccCcaaggccttcaagaactcgt	9	17	1	1	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	ZNF628-22	NM_033113	exon3	c.C461G	p.P154R	ACTGCCCCAAGGC	.	200	23	25	0	.	1	1	0	0	0	G	55993021	C	G	55993021	3	3	10	1	0	0	0	0	1	0	0	0	18089	623	22	3	451	3	ZNF628	19	55993021	Missense_Mutation	SNP	C	TCGA-OR-A5JB-01A-11D-A29I-10	364412	55993021	3135962	402	2645										
ZNF628	89887	hgsc.bcm.edu	37	chr19	55993436	55993436	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	gcggcggagaccacggtggaGctggtgtaccgctgcgatgg	19	10	0	1	rs147110934		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	ZNF628-22	NM_033113	exon3	c.G876T	p.E292D	GGTGGAGCTGGTG	.	25	18	3	0	G|0.978;T|0.022	0	0	0	0	0	T	55993436	G	T	55993436	3	4	10	1	0	0	0	0	1	0	0	0	18089	962	34	3	866	3	ZNF628	19	55993436	Missense_Mutation	SNP	G	TCGA-OR-A5JB-01A-11D-A29I-10	415	55993436	3135547	403	2646										
NLRP8	126205	broad.mit.edu;bcgsc.ca	37	chr19	56467088	56467088	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	caaaagctatctctctcacaTgggacttttcttattcggtt	6	10	3	0	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	NLRP8-361	NM_176811	exon3	c.T1664A	p.M555K	CTCACATGGGACT	.	55	24	52	1	.	0	0	0	0	0	A	56467088	T	A	56467088	3	1	10	1	0	0	0	0	1	0	0	0	10512	1464	51	5	1674	5	NLRP8	19	56467088	Missense_Mutation	SNP	T	TCGA-OR-A5JB-01A-11D-A29I-10	473652	56467088	2661895	404	2647										
NLRP5	126206	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	56511131	56511131	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	ttgaacttggagctgctgctCtgctctcagcatcaccacgt	9	13	3	1	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	NLRP5-162	NM_153447	exon1	c.C40G	p.L14V	GCTGCTCTGCTCT	.	104	41	77	0	.	0	0	0	0	0	G	56511131	C	G	56511131	3	3	10	1	0	0	0	0	1	0	0	0	10509	912	32	3	42	3	NLRP5	19	56511131	Missense_Mutation	SNP	C	TCGA-OR-A5JB-01A-11D-A29I-10	44043	56511131	2617852	405	2648										
ZNF548	147694	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	chr19	57911240	57911240	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	acatcagagatttcacaatgGagaaagtttaccattgacta	7	7	2	3	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	ZNF548-67	NM_001172773	exon4	c.G1621T	p.E541X	ACAATGGAGAAAG	.	28	14	27	0	.	8	5	3	0	0	T	57911240	G	T	57911240	4	4	10	1	0	0	0	0	0	1	0	0	18017	1175	41	3	1635	3	ZNF548	19	57911240	Nonsense_Mutation	SNP	G	TCGA-OR-A5JB-01A-11D-A29I-10	1400109	57911240	1217743	406	2649										
CPXM1	56265	hgsc.bcm.edu	37	chr20	2781078	2781078	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	tccgccggcggctgtgccggGctgctatgcagggccggggt	19	13	0	0	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	CPXM1-94	NM_001184699	exon1	c.C141A	p.S47R	TGCCGGGCTGCTA	.	38	27	4	0	.	2	0	2	0	0	T	2781078	G	T	2781078	3	4	10	1	0	0	0	0	1	0	0	0	3843	1194	42	3	2119	3	CPXM1	20	2781078	Missense_Mutation	SNP	G	TCGA-OR-A5JB-01A-11D-A29I-10		2781078	60244442	407	2650										
PLCB4	5332	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr20	9360778	9360778	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	gcaatgcagatcattgagatGtatgaacctgatgaagattt	10	5	1	6	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	PLCB4-274	NM_182797	exon11	c.G822T	p.M274I	TGAGATGTATGAA	.	223	67	251	0	.	0	0	0	0	0	T	9360778	G	T	9360778	3	4	10	1	0	0	0	0	1	0	0	0	12059	1377	48	3	860	3	PLCB4	20	9360778	Missense_Mutation	SNP	G	TCGA-OR-A5JB-01A-11D-A29I-10	6579700	9360778	53664742	408	2651										
CEP250	11190	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr20	34063418	34063418	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	ccctggagtcaagtcacctgGaaggggagttactgaggcaa	14	9	2	1	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	CEP250-27	NM_007186	exon15	c.G1663T	p.E555X	CACCTGGAAGGGG	.	146	58	101	0	.	0	0	0	0	0	T	34063418	G	T	34063418	4	4	10	1	0	0	0	0	0	1	0	0	3258	1175	41	3	1709	3	CEP250	20	34063418	Nonsense_Mutation	SNP	G	TCGA-OR-A5JB-01A-11D-A29I-10	24702640	34063418	28962102	409	2652										
ACTR5	79913	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr20	37383613	37383613	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	tttgaagaattacacaaatgGcggtgtcctgattattatga	9	5	0	4	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	ACTR5-90	NM_024855	exon4	c.G789T	p.W263C	CAAATGGCGGTGT	.	193	60	213	1	.	5	1	4	0	0	T	37383613	G	T	37383613	3	4	10	1	0	0	0	0	1	0	0	0	215	1212	42	3	803	3	ACTR5	20	37383613	Missense_Mutation	SNP	G	TCGA-OR-A5JB-01A-11D-A29I-10	3320195	37383613	25641907	410	2653										
WISP2	8839	hgsc.bcm.edu	37	chr20	43348735	43348735	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	cccggggcaggacccggtggCcggggggccctgtgcctctg	19	15	1	0	rs2296530	byfrequency	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	WISP2-130	NM_003881	exon2	c.C258A	p.G86G	CGGTGGCCGGGGG	.	7	4	0	0	C|0.615;A|0.385	0	0	0	0	0	A	43348735	C	A	43348735	2	1	10	1	0	0	0	0	0	0	0	1	17411	726	26	3		3	WISP2	20	43348735	Silent	SNP	C	TCGA-OR-A5JB-01A-11D-A29I-10	5965122	43348735	19676785	411	2654										
SEMG2	6407	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr20	43850726	43850726	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	gatcaggggaatagcccatcTggaaagggattatccagtca	12	8	3	0	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	SEMG2-91	NM_003008	exon2	c.T453A	p.S151S	CCCATCTGGAAAG	.	264	104	238	0	.	0	0	0	0	0	A	43850726	T	A	43850726	2	1	10	1	0	0	0	0	0	0	0	1	14080	1567	55	5		5	SEMG2	20	43850726	Silent	SNP	T	TCGA-OR-A5JB-01A-11D-A29I-10	501991	43850726	19174794	412	2655										
ARFGEF2	10564	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr20	47630130	47630130	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	gaatacacaagtgatgacatGaatgtagctcctggtgacag	11	7	0	4	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	ARFGEF2-358	NM_006420	exon29	c.G3948A	p.M1316I	TGACATGAATGTA	.	151	50	89	0	.	1	1	0	0	0	A	47630130	G	A	47630130	3	1	10	1	0	0	0	0	1	0	0	0	853	1290	45	3	4062	3	ARFGEF2	20	47630130	Missense_Mutation	SNP	G	TCGA-OR-A5JB-01A-11D-A29I-10	3779404	47630130	15395390	413	2656										
KCNB1	3745	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr20	47990374	47990374	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	gtcaatgaccccttctgtgcGagtgggcagaggggctacgg	16	10	2	2	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	KCNB1-92	NM_004975	exon2	c.C1723G	p.R575G	CTGTGCGAGTGGG	.	117	34	96	0	.	0	0	0	0	0	C	47990374	G	C	47990374	3	2	10	1	0	0	0	0	1	0	0	0	8033	1058	37	2	857	2	KCNB1	20	47990374	Missense_Mutation	SNP	G	TCGA-OR-A5JB-01A-11D-A29I-10	360244	47990374	15035146	414	2657										
TSHZ2	128553	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr20	51872153	51872153	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	cttgcgctcaccttcctgctCcagcccaagttcaagcacaa	6	17	2	0	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	TSHZ2-232	NM_173485	exon2	c.C2156A	p.S719Y	CCTGCTCCAGCCC	.	163	55	72	0	.	0	0	0	0	0	A	51872153	C	A	51872153	3	1	10	1	0	0	0	0	1	0	0	0	16662	855	30	3	2162	3	TSHZ2	20	51872153	Missense_Mutation	SNP	C	TCGA-OR-A5JB-01A-11D-A29I-10	3881779	51872153	11153367	415	2658										
MC3R	4159	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr20	54824215	54824215	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	ccatcgtccacagcgactacCtgaccttcgaggaccagttt	8	15	0	1	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	MC3R-660	NM_019888	exon1	c.C316A	p.L106M	GACTACCTGACCT	.	492	178	281	0	.	0	0	0	0	0	A	54824215	C	A	54824215	3	1	10	1	0	0	0	0	1	0	0	0	9393	680	24	3	318	3	MC3R	20	54824215	Missense_Mutation	SNP	C	TCGA-OR-A5JB-01A-11D-A29I-10	2952062	54824215	8201305	416	2659										
GNAS	2778	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr20	57430199	57430199	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	tcggtcgatctgagagtcccCagcccaaagcctcgcgctct	10	16	2	1	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	GNAS-4767	NM_080425	exon1	c.C1879T	p.Q627X	AGTCCCCAGCCCA	.	112	34	108	0	.	0	0	0	0	0	T	57430199	C	T	57430199	4	4	10	1	0	0	0	0	0	1	0	0	6530	595	21	3	2623	3	GNAS	20	57430199	Nonsense_Mutation	SNP	C	TCGA-OR-A5JB-01A-11D-A29I-10	2605984	57430199	5595321	417	2660										
ZNF831	128611	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr20	57768876	57768876	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	gtgctctctgccctggcagaTaatgccttttcccccaagta	8	14	1	1	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	ZNF831-126	NM_178457	exon1	c.T2802A	p.D934E	GGCAGATAATGCC	.	60	20	49	0	.	0	0	0	0	0	A	57768876	T	A	57768876	3	1	10	1	0	0	0	0	1	0	0	0	18222	1403	49	5	2804	5	ZNF831	20	57768876	Missense_Mutation	SNP	T	TCGA-OR-A5JB-01A-11D-A29I-10	338677	57768876	5256644	418	2661										
GRIK1	2897	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr21	30959761	30959761	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	tccaaatatctggagacaggGggttgaggaaggagaaaacg	15	5	1	3	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	GRIK1-137	NM_000830	exon12	c.C1718A	p.P573H	GACAGGGGGTTGA	.	221	72	159	0	.	0	0	0	0	0	T	30959761	G	T	30959761	3	4	10	1	0	0	0	0	1	0	0	0	6794	1232	43	3	1222	3	GRIK1	21	30959761	Missense_Mutation	SNP	G	TCGA-OR-A5JB-01A-11D-A29I-10		30959761	17170134	419	2662										
KRTAP24-1	643803	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr21	31654682	31654682	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	tgttggaaatataacataatGgtgagacgtagctgggtatg	13	3	0	1	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	KRTAP24-1-68	NM_001085455	exon1	c.C569A	p.P190Q	CATAATGGTGAGA	.	143	60	132	0	.	0	0	0	0	0	T	31654682	G	T	31654682	3	4	10	1	0	0	0	0	1	0	0	0	8564	1348	47	3	199	3	KRTAP24-1	21	31654682	Missense_Mutation	SNP	G	TCGA-OR-A5JB-01A-11D-A29I-10	694921	31654682	16475213	420	2663										
ERG	2078	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr21	39817408	39817408	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	gagacagccaatcctgctgaGggacgcgtgggctcatcttg	14	11	2	2	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	ERG-848	NM_004449	exon4	c.C176G	p.P59R	TGCTGAGGGACGC	.	342	120	238	0	.	2	2	0	0	0	C	39817408	G	C	39817408	3	2	10	1	0	0	0	0	1	0	0	0	5235	1000	35	3	1320	3	ERG	21	39817408	Missense_Mutation	SNP	G	TCGA-OR-A5JB-01A-11D-A29I-10	8162726	39817408	8312487	421	2664										
DNMT3L	29947	broad.mit.edu;bcgsc.ca	37	chr21	45676028	45676028	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	cacggtttcgaacatctcaaGgggattctcctatttattaa	7	9	2	0	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	DNMT3L-228	NM_013369	exon7	c.C526A	p.L176I	TCTCAAGGGGATT	.	261	29	284	2	.	0	0	0	0	0	T	45676028	G	T	45676028	3	4	10	1	0	0	0	0	1	0	0	0	4689	1000	35	3	661	3	DNMT3L	21	45676028	Missense_Mutation	SNP	G	TCGA-OR-A5JB-01A-11D-A29I-10	5858620	45676028	2453867	422	2665										
KRTAP10-8	386681	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr21	46032129	46032129	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	cctcccccagcacctgcactGgctcctcctggcaggtggac	10	19	0	0	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	KRTAP10-8-153	NM_198695	exon1	c.G112A	p.G38S	TGCACTGGCTCCT	.	140	48	57	0	.	0	0	0	0	0	A	46032129	G	A	46032129	3	1	10	1	0	0	0	0	1	0	0	0	8536	1348	47	3	114	3	KRTAP10-8	21	46032129	Missense_Mutation	SNP	G	TCGA-OR-A5JB-01A-11D-A29I-10	356101	46032129	2097766	423	2666										
TBX1	6899	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr22	19752531	19752531	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	ccccgcttccacgtggtctaTgtggacccacgcaaagatag	10	14	1	1	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	TBX1-154	NM_080647	exon6	c.T735C	p.Y245Y	GGTCTATGTGGAC	.	147	97	170	0	.	1	0	1	0	0	C	19752531	T	C	19752531	2	2	10	1	0	0	0	0	0	0	0	1	15687	1471	51	4		4	TBX1	22	19752531	Silent	SNP	T	TCGA-OR-A5JB-01A-11D-A29I-10		19752531	31552035	424	2667										
SGSM1	129049	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr22	25240890	25240890	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	cagatcatggaggaggctgtGacacgcaagtttgtccacga	13	9	1	2	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	SGSM1-27	NM_001098497	exon3	c.G90A	p.V30V	GGCTGTGACACGC	.	145	102	103	0	.	0	0	0	0	0	A	25240890	G	A	25240890	2	1	10	1	0	0	0	0	0	0	0	1	14257	1277	45	3		3	SGSM1	22	25240890	Silent	SNP	G	TCGA-OR-A5JB-01A-11D-A29I-10	5488359	25240890	26063676	425	2668										
SEZ6L	23544	hgsc.bcm.edu	37	chr22	26689105	26689105	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	acggtcatcaccaccgagcaGgcaccaggtatgcagccccc	10	17	2	0	rs17395296	byfrequency	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	SEZ6L-95	NM_021115	exon2	c.G828A	p.Q276Q	CGAGCAGGCACCA	.	4	4	2	0	G|0.931;A|0.069	0	0	0	0	0	A	26689105	G	A	26689105	2	1	10	1	0	0	0	0	0	0	0	1	14178	991	35	3		3	SEZ6L	22	26689105	Silent	SNP	G	TCGA-OR-A5JB-01A-11D-A29I-10	1448215	26689105	24615461	426	2669										
SFI1	9814	hgsc.bcm.edu;bcgsc.ca	37	chr22	31904328	31904328	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	acaatttccatcaaaaagtgAttaagcagagaatggagaag	9	5	1	3	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	SFI1-90	NM_001258327	exon2	c.A58G	p.I20V	AAAGTGATTAAGC	.	48	4	64	0	.	0	0	0	0	0	G	31904328	A	G	31904328	3	3	10	1	0	0	0	0	1	0	0	0	14191	333	12	4	60	4	SFI1	22	31904328	Missense_Mutation	SNP	A	TCGA-OR-A5JB-01A-11D-A29I-10	5215223	31904328	19400238	427	2670										
MICALL1	85377	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr22	38323452	38323452	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	cgcctctcgcactcggagccGccctcggccacaccatcgcc	9	22	1	0	rs201808090		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	MICALL1-153	NM_033386	exon9	c.G1500A	p.P500P	GGAGCCGCCCTCG	.	44	29	18	0	.	5	0	5	0	0	A	38323452	G	A	38323452	2	1	10	1	0	0	0	0	0	0	0	1	9601	1074	38	1		1	MICALL1	22	38323452	Silent	SNP	G	TCGA-OR-A5JB-01A-11D-A29I-10	6419124	38323452	12981114	428	2671										
SOX10	6663	broad.mit.edu;bcgsc.ca	37	chr22	38379397	38379397	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	ccagcgtcttgctgagctcaGcgttgtgcaggtgcgggtac	15	11	2	1	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	SOX10-650	NM_006941	exon2	c.C395T	p.A132V	AGCTCAGCGTTGT	.	346	249	60	2	.	0	0	0	0	0	A	38379397	G	A	38379397	3	1	10	1	0	0	0	0	1	0	0	0	14976	971	34	3	1017	3	SOX10	22	38379397	Missense_Mutation	SNP	G	TCGA-OR-A5JB-01A-11D-A29I-10	55945	38379397	12925169	429	2672										
EP300	2033	bcgsc.ca	37	chr22	41568590	41568590	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	atttctggcccaatgttctgGaagaaagcattaaggaactg	10	7	2	1	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	EP300-2011	NM_001429	exon28	c.G4540A	p.E1514K	GTTCTGGAAGAAA	.	165	116	175	4	.	8	0	8	0	0	A	41568590	G	A	41568590	3	1	10	1	0	0	0	0	1	0	0	0	5161	1175	41	3	4650	3	EP300	22	41568590	Missense_Mutation	SNP	G	TCGA-OR-A5JB-01A-11D-A29I-10	3189193	41568590	9735976	430	2673										
SBF1	6305	ucsc.edu;bcgsc.ca	37	chr22	50901135	50901135	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	tatgcaaactgcgtcaccccCgggctcagcttctgcaggag	11	14	3	0	rs143643893	by1000genomes;alternate_allele	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	SBF1-90	NM_002972	exon18	c.G1980T	p.P660P	CACCCCCGGGCTC	.	195	141	123	1	C|0.994;T|0.006	0	0	0	0	0	A	50901135	C	A	50901135	2	1	10	1	0	0	0	0	0	0	0	1	13893	639	23	2		2	SBF1	22	50901135	Silent	SNP	C	TCGA-OR-A5JB-01A-11D-A29I-10	9332545	50901135	403431	431	2674										
PPP2R3B	28227	ucsc.edu;bcgsc.ca	37	chrX	299594	299594	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	gtgtcgaagaagacgttagcCagcttgcagcgcttcaggtc	13	10	1	2	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	PPP2R3B-136	NM_013239	exon11	c.G1389A	p.L463L	GTTAGCCAGCTTG	.	401	228	341	2	.	0	0	0	0	0	T	299594	C	T	299594	2	4	10	1	0	0	0	0	0	0	0	1	12421	581	21	3		3	PPP2R3B	23	299594	Silent	SNP	C	TCGA-OR-A5JB-01A-11D-A29I-10		299594	154970966	432	2675										
ARSH	347527	bcgsc.ca	37	chrX	2945477	2945477	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	cttaatggacatctatccgaCgctgtcttatataggcggag	10	9	2	0	rs61751925	byfrequency	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	ARSH-130	NM_001011719	exon7	c.C1160T	p.T387M	ATCCGACGCTGTC	.	123	5	116	0	C|0.940;T|0.060	0	0	0	0	0	T	2945477	C	T	2945477	3	4	10	1	0	0	0	0	1	0	0	0	994	536	19	1	1186	1	ARSH	23	2945477	Missense_Mutation	SNP	C	TCGA-OR-A5JB-01A-11D-A29I-10	2645883	2945477	152325083	433	2676										
FRMPD4	9758	broad.mit.edu	37	chrX	12734328	12734328	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	agaagacggtggagatcacaGacagcaccatgtgtccaaaa	11	9	1	4	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	FRMPD4-263	NM_014728	exon15	c.G1750A	p.D584N	ATCACAGACAGCA	.	58	4	51	0	.	0	0	0	0	0	A	12734328	G	A	12734328	3	1	10	1	0	0	0	0	1	0	0	0	6078	942	33	3	1808	3	FRMPD4	23	12734328	Missense_Mutation	SNP	G	TCGA-OR-A5JB-01A-11D-A29I-10	9788851	12734328	142536232	434	2677										
CACNA1F	778	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	49083514	49083514	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	aggtagccccgcaggtcttcCtccatctgctgcttctcccg	9	17	3	0	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	CACNA1F-176	NM_001256789	exon9	c.G1194T	p.E398D	GTCTTCCTCCATC	.	67	45	54	0	.	0	0	0	0	0	A	49083514	C	A	49083514	3	1	10	1	0	0	0	0	1	0	0	0	2549	680	24	3	4899	3	CACNA1F	23	49083514	Missense_Mutation	SNP	C	TCGA-OR-A5JB-01A-11D-A29I-10	36349186	49083514	106187046	435	2678										
KIAA2022	340533	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	73962657	73962657	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	tttcaagggtgccagcttggCatatttgttgagctgattct	11	7	2	2	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	KIAA2022-183	NM_001008537	exon3	c.G1735T	p.A579S	GCTTGGCATATTT	.	49	39	54	0	.	0	0	0	0	0	A	73962657	C	A	73962657	3	1	10	1	0	0	0	0	1	0	0	0	8290	710	25	3	2823	3	KIAA2022	23	73962657	Missense_Mutation	SNP	C	TCGA-OR-A5JB-01A-11D-A29I-10	24879143	73962657	81307903	436	2679										
CYLC1	1538	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	83124906	83124906	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	atcagaacatatgataattcCattccaagtaagaatttagt	5	6	1	3	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	CYLC1-112	NM_021118	exon2	c.C51T	p.S17S	TAATTCCATTCCA	.	67	37	89	0	.	0	0	0	0	0	T	83124906	C	T	83124906	2	4	10	1	0	0	0	0	0	0	0	1	4147	581	21	3		3	CYLC1	23	83124906	Silent	SNP	C	TCGA-OR-A5JB-01A-11D-A29I-10	9162249	83124906	72145654	437	2680										
CSTF2	1478	broad.mit.edu	37	chrX	100075447	100075447	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	gacccagcggtggatcgttcTctacgttctgtgttcggtga	13	10	2	1	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	CSTF2-131	NM_001325	exon1	c.T42G	p.S14S	TCGTTCTCTACGT	.	182	4	105	0	.	7	7	0	0	0	G	100075447	T	G	100075447	2	3	10	1	0	0	0	0	0	0	0	1	3990	1538	54	5		5	CSTF2	23	100075447	Silent	SNP	T	TCGA-OR-A5JB-01A-11D-A29I-10	16950541	100075447	55195113	438	2681										
SEPT6	23157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	118774715	118774715	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	cttgttgcctatcttcagttCttctgtgctgccaatgacag	8	11	4	1	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	SEPT6-969	NM_145802	exon6	c.G727C	p.E243Q	TCAGTTCTTCTGT	.	79	61	51	0	.	6	3	3	0	0	G	118774715	C	G	118774715	3	3	10	1	0	0	0	0	1	0	0	0	14103	922	32	3	619	3	SEPT6	23	118774715	Missense_Mutation	SNP	C	TCGA-OR-A5JB-01A-11D-A29I-10	18699268	118774715	36495845	439	2682										
GRIA3	2892	bcgsc.ca	37	chrX	122537277	122537277	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	ttctaggctggctactggaaTgagtatgaaaggtttgtgcc	13	6	1	2	rs502434	byfrequency	TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	GRIA3-134	NM_000828	exon9	c.T1200C	p.N400N	CTGGAATGAGTAT	.	112	5	59	0	T|0.362;0|0.004	0	0	0	0	0	C	122537277	T	C	122537277	2	2	10	1	0	0	0	0	0	0	0	1	6790	1461	51	4		4	GRIA3	23	122537277	Silent	SNP	T	TCGA-OR-A5JB-01A-11D-A29I-10	3762562	122537277	32733283	440	2683										
GPR112	139378	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	135431107	135431107	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.158256880733945	69	2.56795569705222e-18	3.32908066951925	4.48702177196073	2.75011011829851	0.344740933257087	1	48	attccagaatcactgttcctGaaaatatgctttcacctact	4	11	2	2	novel		TCGA-OR-A5JB-01A-11D-A29I-10	TCGA-OR-A5JB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ae895223-2bbb-4ce7-af4d-f8d66be796b5	d5966629-ec69-40d3-bd5e-28e207c0da9d	.	GPR112-183	NM_153834	exon6	c.G5242A	p.E1748K	GTTCCTGAAAATA	.	28	19	30	0	.	0	0	0	0	0	A	135431107	G	A	135431107	3	1	10	1	0	0	0	0	1	0	0	0	6649	1291	45	3	5252	3	GPR112	23	135431107	Missense_Mutation	SNP	G	TCGA-OR-A5JB-01A-11D-A29I-10	12893830	135431107	19839453	441	2684										
GABRD	2563	bcgsc.ca	37	chr1	1957037	1957037	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0707070707070707	7	0.871929730042091	1.418125	2.70119047619048	0.868239795918367	1	1	0	cacaccaacgagaccctgggTctggacagccgcttcgtgga	12	14	1	1	rs2229110	byfrequency	TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	.	GABRD-92	NM_000815	exon4	c.T330C	p.G110G	CCTGGGTCTGGAC	.	420	9	270	0	T|0.334;C|0.666	0	0	0	0	0	C	1957037	T	C	1957037	2	2	11	1	0	0	0	0	0	0	0	1	6188	1654	58	4		4	GABRD	1	1957037	Silent	SNP	T	TCGA-OR-A5JC-01A-11D-A29I-10		1957037	247293584	1	2685										
PEX10	5192	bcgsc.ca	37	chr1	2338015	2338015	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0707070707070707	7	0.871929730042091	1.418125	2.70119047619048	0.868239795918367	1	1	0	gcgctcctccaggcacagggTgcacagggggtttctggaaa	15	11	1	0	rs34154371	byfrequency	TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	.	PEX10-90	NM_153818	exon5	c.A880G	p.T294A	ACAGGGTGCACAG	.	42	34	12	0	T|0.984;C|0.016	18	2	16	0	0	C	2338015	T	C	2338015	3	2	11	1	0	0	0	0	1	0	0	0	11765	1696	59	4	168	4	PEX10	1	2338015	Missense_Mutation	SNP	T	TCGA-OR-A5JC-01A-11D-A29I-10	380978	2338015	246912606	2	2686										
SPRR3	6707	bcgsc.ca	37	chr1	152975763	152975763	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0707070707070707	7	0.871929730042091	1.418125	2.70119047619048	0.868239795918367	1	1	0	accaaggtccctgagccaggCtgtaccaaggtccctgagcc	11	15	0	2	rs1977734	byfrequency	TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	.	SPRR3-45	NM_001097589	exon2	c.C267A	p.G89G	GCCAGGCTGTACC	.	132	6	131	2	T|0.136;G|0.132;C|0.344;A|0.387	29	20	0	0	9	A	152975763	C	A	152975763	2	1	11	1	0	0	0	0	0	0	0	1	15140	784	28	3		3	SPRR3	1	152975763	Silent	SNP	C	TCGA-OR-A5JC-01A-11D-A29I-10	150637748	152975763	96274858	3	2687										
CHIT1	1118	bcgsc.ca	37	chr1	203186950	203186950	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0707070707070707	7	0.871929730042091	1.418125	2.70119047619048	0.868239795918367	1	1	0	agtcatctaagtccagtgccCagaccatggccccgcccagt	9	16	2	1	rs201320385	byfrequency	TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	.	CHIT1-90	NM_003465	exon10	c.G1073A	p.W358X	AGTGCCCAGACCA	.	57	6	52	0	C|0.989;T|0.011	2	2	0	0	0	T	203186950	C	T	203186950	4	4	11	1	0	0	0	0	0	1	0	0	3352	595	21	3	335	3	CHIT1	1	203186950	Nonsense_Mutation	SNP	C	TCGA-OR-A5JC-01A-11D-A29I-10	50211187	203186950	46063671	4	2688										
IKBKE	9641	bcgsc.ca	37	chr1	206650065	206650065	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0707070707070707	7	0.871929730042091	1.418125	2.70119047619048	0.868239795918367	1	1	0	gtgcttcgaaagccccagcaAaaagcgttcggggtgactgt	13	10	0	1	rs41296034	byfrequency	TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	.	IKBKE-1061	NM_001193322	exon7	c.A585G	p.Q195Q	CCAGCAAAAAGCG	.	177	7	158	0	A|0.947;G|0.053	0	0	0	0	0	G	206650065	A	G	206650065	2	3	11	1	0	0	0	0	0	0	0	1	7633	11	1	4		4	IKBKE	1	206650065	Silent	SNP	A	TCGA-OR-A5JC-01A-11D-A29I-10	3463115	206650065	42600556	5	2689										
OR2T11	127077	ucsc.edu;bcgsc.ca	37	chr1	248789753	248789753	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0707070707070707	7	0.871929730042091	1.418125	2.70119047619048	0.868239795918367	1	1	0	ttttgcgaccttcagcagagGgcatgcggtggatggttaac	14	8	1	1	rs28555577	byfrequency	TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	.	OR2T11-69	NM_001001964	exon1	c.C677G	p.P226R	GCAGAGGGCATGC	.	24	4	80	0	G|0.888;C|0.112	0	0	0	0	0	C	248789753	G	C	248789753	3	2	11	1	0	0	0	0	1	0	0	0	11047	1232	43	3	277	3	OR2T11	1	248789753	Missense_Mutation	SNP	G	TCGA-OR-A5JC-01A-11D-A29I-10	42139688	248789753	460868	6	2690										
OR2T27	403239	bcgsc.ca	37	chr1	248813280	248813280	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0707070707070707	7	0.871929730042091	1.418125	2.70119047619048	0.868239795918367	1	1	0	acacacctccccacaaccttCtgtagggcccctgtgacatc	6	18	1	1	rs116125618	byfrequency	TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	.	OR2T27-47	NM_001001824	exon1	c.G906A	p.Q302Q	AACCTTCTGTAGG	.	69	5	158	0	C|0.922;T|0.078	0	0	0	0	0	T	248813280	C	T	248813280	2	4	11	1	0	0	0	0	0	0	0	1	11050	912	32	3		3	OR2T27	1	248813280	Silent	SNP	C	TCGA-OR-A5JC-01A-11D-A29I-10	23527	248813280	437341	7	2691										
PRKD3	23683	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr2	37543587	37543587	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0707070707070707	7	0.871929730042091	1.418125	2.70119047619048	0.868239795918367	1	1	0	gtcttaggacttgaacacggAgaagcagctggaagcacagc	13	9	1	2	novel		TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	.	PRKD3-543	NM_005813	exon1	c.T81A	p.S27S	ACACGGAGAAGCA	.	124	10	126	0	.	0	0	0	0	0	T	37543587	A	T	37543587	2	4	11	1	0	0	0	0	0	0	0	1	12552	291	11	5		5	PRKD3	2	37543587	Silent	SNP	A	TCGA-OR-A5JC-01A-11D-A29I-10		37543587	205655786	8	2692										
SIX3	6496	hgsc.bcm.edu	37	chr2	45171842	45171842	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0707070707070707	7	0.871929730042091	1.418125	2.70119047619048	0.868239795918367	1	1	0	tccagcctgacggagcgcgcAgacaccggcacctccatcct	10	18	0	2	rs62840660	byfrequency	TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	.	SIX3-90	NM_005413	exon2	c.A942G	p.A314A	GCGCGCAGACACC	.	4	4	0	0	A|0.059;G|0.941	0	0	0	0	0	G	45171842	A	G	45171842	2	3	11	1	0	0	0	0	0	0	0	1	14383	175	7	4		4	SIX3	2	45171842	Silent	SNP	A	TCGA-OR-A5JC-01A-11D-A29I-10	7628255	45171842	198027531	9	2693										
PRR21	643905	bcgsc.ca	37	chr2	240982103	240982103	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0707070707070707	7	0.871929730042091	1.418125	2.70119047619048	0.868239795918367	1	1	0	agggccgtgggtgaagaggcAtggacgaagggccgtgggtg	22	6	0	2	rs74344384	byfrequency	TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	.	PRR21-70	NM_001080835	exon1	c.T297C	p.H99H	AGAGGCATGGACG	.	84	30	123	9	A|0.951;G|0.049	0	0	0	0	0	G	240982103	A	G	240982103	2	3	11	1	0	0	0	0	0	0	0	1	12624	214	8	4		4	PRR21	2	240982103	Silent	SNP	A	TCGA-OR-A5JC-01A-11D-A29I-10	195810261	240982103	2217270	10	2694										
GRM7	2917	bcgsc.ca	37	chr3	7620789	7620789	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0707070707070707	7	0.871929730042091	1.418125	2.70119047619048	0.868239795918367	1	1	0	cccaacatcatcatagactaTgatgaacacaagacaatgaa	5	10	2	5	rs1485175	byfrequency	TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	.	GRM7-526	NM_000844	exon8	c.T2196C	p.Y732Y	AGACTATGATGAA	.	237	8	172	1	T|0.451;C|0.549	0	0	0	0	0	C	7620789	T	C	7620789	2	2	11	1	0	0	0	0	0	0	0	1	6823	1471	51	4		4	GRM7	3	7620789	Silent	SNP	T	TCGA-OR-A5JC-01A-11D-A29I-10		7620789	190401641	11	2695										
DPPA2	151871	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	109027035	109027035	+	Nonsense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0707070707070707	7	0.871929730042091	1.418125	2.70119047619048	0.868239795918367	1	1	0	tgtattggtctcttctgctcTctcattcatctcataacttc	4	12	6	0	novel		TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	.	DPPA2-93	NM_138815	exon6	c.A502T	p.R168X	CTGCTCTCTCATT	.	151	37	117	1	.	0	0	0	0	0	A	109027035	T	A	109027035	4	1	11	1	0	0	0	0	0	1	0	0	4745	1559	54	5	406	5	DPPA2	3	109027035	Nonsense_Mutation	SNP	T	TCGA-OR-A5JC-01A-11D-A29I-10	101406246	109027035	88995395	12	2696										
ADPRH	141	broad.mit.edu	37	chr3	119306669	119306669	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0707070707070707	7	0.871929730042091	1.418125	2.70119047619048	0.868239795918367	1	1	0	acagaaaccggctggaagagAcagctagggctttatattct	11	8	1	2	novel		TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	.	ADPRH-91	NM_001125	exon5	c.A1018G	p.T340A	GAAGAGACAGCTA	.	58	4	50	0	.	0	0	0	0	0	G	119306669	A	G	119306669	3	3	11	1	0	0	0	0	1	0	0	0	331	275	10	4	1028	4	ADPRH	3	119306669	Missense_Mutation	SNP	A	TCGA-OR-A5JC-01A-11D-A29I-10	10279634	119306669	78715761	13	2697										
PLXNA1	5361	hgsc.bcm.edu	37	chr3	126733053	126733053	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0707070707070707	7	0.871929730042091	1.418125	2.70119047619048	0.868239795918367	1	1	0	tacaagtgcccggccctgcgCgagagctgcggcctctgcct	13	16	1	1	rs11719489	byfrequency	TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	.	PLXNA1-93	NM_032242	exon11	c.C2439T	p.R813R	CCTGCGCGAGAGC	.	7	4	0	0	C|0.900;T|0.100	0	0	0	0	0	T	126733053	C	T	126733053	2	4	11	1	0	0	0	0	0	0	0	1	12148	755	27	1		1	PLXNA1	3	126733053	Silent	SNP	C	TCGA-OR-A5JC-01A-11D-A29I-10	7426384	126733053	71289377	14	2698										
COL6A6	131873	bcgsc.ca	37	chr3	130361856	130361856	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0707070707070707	7	0.871929730042091	1.418125	2.70119047619048	0.868239795918367	1	1	0	tgagctcattcagtatgtgcGagaccgcagtcgtaagtacc	11	10	2	2	rs16830494	byfrequency	TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	.	COL6A6-76	NM_001102608	exon30	c.G5216A	p.R1739Q	ATGTGCGAGACCG	.	86	6	83	1	G|0.887;A|0.113	0	0	0	0	0	A	130361856	G	A	130361856	3	1	11	1	0	0	0	0	1	0	0	0	3709	1058	37	1	5334	1	COL6A6	3	130361856	Missense_Mutation	SNP	G	TCGA-OR-A5JC-01A-11D-A29I-10	3628803	130361856	67660574	15	2699										
MUC20	200958	bcgsc.ca	37	chr3	195453257	195453257	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0707070707070707	7	0.871929730042091	1.418125	2.70119047619048	0.868239795918367	1	1	0	agacaccgaccatggacatcGcaaccaaggggcccttcccc	9	17	0	1	rs3828406	byfrequency	TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	.	.	NM_152673	exon3	c.G1270A	p.A424T	GACATCGCAACCA	.	226	9	212	1	G|0.643;A|0.357	3	3	0	0	0	A	195453257	G	A	195453257	3	1	11	1	0	0	0	0	1	0	0	0	10004	1087	38	1	1280	1	MUC20	3	195453257	Missense_Mutation	SNP	G	TCGA-OR-A5JC-01A-11D-A29I-10	65091401	195453257	2569173	16	2700										
CRIPAK	285464	hgsc.bcm.edu	37	chr4	1388755	1388755	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0707070707070707	7	0.871929730042091	1.418125	2.70119047619048	0.868239795918367	1	1	0	cccgcctgctcacacgtgccCatgcggagtgcccgcctgct	11	19	1	0	rs141481663	byfrequency	TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	.	CRIPAK-90	NM_175918	exon1	c.C456G	p.P152P	CGTGCCCATGCGG	.	15	6	0	0	C|0.960;G|0.040	11	7	4	0	0	G	1388755	C	G	1388755	2	3	11	1	0	0	0	0	0	0	0	1	3883	581	21	3		3	CRIPAK	4	1388755	Silent	SNP	C	TCGA-OR-A5JC-01A-11D-A29I-10		1388755	189765521	17	2701										
CRIPAK	285464	hgsc.bcm.edu	37	chr4	1389130	1389130	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0707070707070707	7	0.871929730042091	1.418125	2.70119047619048	0.868239795918367	1	1	0	ctgctcacgtgccgatgtggGgtgcccgcctgctcacatgt	13	14	2	0	novel		TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	.	CRIPAK-90	NM_175918	exon1	c.G831A	p.G277G	ATGTGGGGTGCCC	.	99	7	0	0	.	9	6	3	0	0	A	1389130	G	A	1389130	2	1	11	1	0	0	0	0	0	0	0	1	3883	1219	43	3		3	CRIPAK	4	1389130	Silent	SNP	G	TCGA-OR-A5JC-01A-11D-A29I-10	375	1389130	189765146	18	2702										
ANKRD17	26057	ucsc.edu;bcgsc.ca	37	chr4	73956553	73956553	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0707070707070707	7	0.871929730042091	1.418125	2.70119047619048	0.868239795918367	1	1	0	cctccccagaaggcatgagcAgaagtagggctgttttcaaa	11	10	1	3	novel		TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	.	ANKRD17-234	NM_032217	exon29	c.T6792C	p.S2264S	ATGAGCAGAAGTA	.	224	64	152	2	.	17	14	3	0	0	G	73956553	A	G	73956553	2	3	11	1	0	0	0	0	0	0	0	1	646	175	7	4		4	ANKRD17	4	73956553	Silent	SNP	A	TCGA-OR-A5JC-01A-11D-A29I-10	72567423	73956553	117197723	19	2703										
SDAD1	55153	bcgsc.ca	37	chr4	76878716	76878716	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.0707070707070707	7	0.871929730042091	1.418125	2.70119047619048	0.868239795918367	1	1	0	caatgtatttcctcttctggGatttcccgggggcagcatca	10	11	3	0	rs2242471	byfrequency	TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	.	SDAD1-91	NM_018115	exon19	c.C1724G	p.S575C	TTCTGGGATTTCC	.	56	4	31	0	G|0.688;C|0.312	21	21	0	0	0	C	76878716	G	C	76878716	3	2	11	1	0	0	0	0	1	0	0	0	13985	1174	41	3	355	3	SDAD1	4	76878716	Missense_Mutation	SNP	G	TCGA-OR-A5JC-01A-11D-A29I-10	2922163	76878716	114275560	20	2704										
PDLIM4	8572	hgsc.bcm.edu	37	chr5	131607588	131607588	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0707070707070707	7	0.871929730042091	1.418125	2.70119047619048	0.868239795918367	1	1	0	tgcccgagtgcacgcgctgcGgccacggcatcgtgtgagta	15	13	0	1	rs4877	bycluster;byfrequency;by1000genomes	TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	.	PDLIM4-91	NM_003687	exon6	c.G775T	p.G259C	CGCTGCGGCCACG	.	31	17	1	0	G|0.858;T|0.142	0	0	0	0	0	T	131607588	G	T	131607588	3	4	11	1	0	0	0	0	1	0	0	0	11711	1116	39	2	797	2	PDLIM4	5	131607588	Missense_Mutation	SNP	G	TCGA-OR-A5JC-01A-11D-A29I-10		131607588	49307672	21	2705										
PCDHA8	56140	broad.mit.edu;bcgsc.ca	37	chr5	140221312	140221312	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0707070707070707	7	0.871929730042091	1.418125	2.70119047619048	0.868239795918367	1	1	0	acccgccagtgttccgggtaAaagaccaaaagctgtttgtt	10	10	0	1	novel		TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	.	PCDHA8-92	NM_031856	exon1	c.A406G	p.K136E	CGGGTAAAAGACC	.	278	8	147	0	.	0	0	0	0	0	G	140221312	A	G	140221312	3	3	11	1	0	0	0	0	1	0	0	0	11559	15	1	4	408	4	PCDHA8	5	140221312	Missense_Mutation	SNP	A	TCGA-OR-A5JC-01A-11D-A29I-10	8613724	140221312	40693948	22	2706										
PCDHB8	56128	hgsc.bcm.edu	37	chr5	140559342	140559342	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0707070707070707	7	0.871929730042091	1.418125	2.70119047619048	0.868239795918367	1	1	0	ctccgcgccctgcaccgagcTggtgccccgggcggccgagc	15	19	0	0	rs138970173	byfrequency	TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	.	PCDHB8-131	NM_019120	exon1	c.T1727C	p.L576P	CCGAGCTGGTGCC	.	106	9	3	0	T|1.000;C|0.000	29	28	1	0	0	C	140559342	T	C	140559342	3	2	11	1	0	0	0	0	1	0	0	0	11577	1580	55	4	1729	4	PCDHB8	5	140559342	Missense_Mutation	SNP	T	TCGA-OR-A5JC-01A-11D-A29I-10	338030	140559342	40355918	23	2707										
PCDHB12	56124	hgsc.bcm.edu	37	chr5	140590139	140590139	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0707070707070707	7	0.871929730042091	1.418125	2.70119047619048	0.868239795918367	1	1	0	tgcgcgtgctggtgctggacGccaacgacaactcgcccttc	12	15	0	0	rs61741192	byfrequency	TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	.	PCDHB12-93	NM_018932	exon1	c.G1660A	p.A554T	CTGGACGCCAACG	.	267	161	5	0	G|0.875;A|0.125	61	60	1	0	0	A	140590139	G	A	140590139	3	1	11	1	0	0	0	0	1	0	0	0	11566	1087	38	1	1662	1	PCDHB12	5	140590139	Missense_Mutation	SNP	G	TCGA-OR-A5JC-01A-11D-A29I-10	30797	140590139	40325121	24	2708										
C6orf136	221545	hgsc.bcm.edu	37	chr6	30615260	30615260	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0707070707070707	7	0.871929730042091	1.418125	2.70119047619048	0.868239795918367	1	1	0	gcgggagcgggagggaggcgCtgccgggcctgtcgcgcaag	22	11	0	0	rs3132594	byfrequency	TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	.	C6orf136-90	NM_001161376	exon1	c.C252T	p.R84R	GAGGCGCTGCCGG	.	10	7	0	0	C|0.944;T|0.056	3	1	2	0	0	T	30615260	C	T	30615260	2	4	11	1	0	0	0	0	0	0	0	1	2337	784	28	3		3	C6orf136	6	30615260	Silent	SNP	C	TCGA-OR-A5JC-01A-11D-A29I-10		30615260	140499807	25	2709										
C6orf15	29113	bcgsc.ca	37	chr6	31079994	31079994	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0707070707070707	7	0.871929730042091	1.418125	2.70119047619048	0.868239795918367	1	1	0	gccagtggaggaaggttgtcCgagctgaggcaagttggtcc	17	8	0	1	rs2233976	byfrequency	TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	.	C6orf15-90	NM_014070	exon2	c.G142A	p.G48R	GTTGTCCGAGCTG	.	187	6	135	0	C|0.919;T|0.081	0	0	0	0	0	T	31079994	C	T	31079994	3	4	11	1	0	0	0	0	1	0	0	0	2342	661	23	1	839	1	C6orf15	6	31079994	Missense_Mutation	SNP	C	TCGA-OR-A5JC-01A-11D-A29I-10	464734	31079994	140035073	26	2710										
HLA-B	3106	bcgsc.ca;mdanderson.org	37	chr6	31324100	31324100	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0707070707070707	7	0.871929730042091	1.418125	2.70119047619048	0.868239795918367	1	1	0	gtccgcggcggtccaggagcGcaggtcctcgttcagggcga	17	13	1	0	rs1050654	byfrequency	TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	.	HLA-B-90	NM_005514	exon3	c.C463A	p.R155S	AGGAGCGCAGGTC	.	262	56	31	0	T|0.427;G|0.573	384	384	0	0	0	T	31324100	G	T	31324100	3	4	11	1	0	0	0	0	1	0	0	0	7217	1087	38	2	645	2	HLA-B	6	31324100	Missense_Mutation	SNP	G	TCGA-OR-A5JC-01A-11D-A29I-10	244106	31324100	139790967	27	2711										
PBX2	5089	hgsc.bcm.edu	37	chr6	32157639	32157639	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0707070707070707	7	0.871929730042091	1.418125	2.70119047619048	0.868239795918367	1	1	0	ggctccccactcaccaatccCaggcccccccggcccccgcc	7	26	1	0	rs169503	bycluster;byfrequency;by1000genomes	TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	.	PBX2-91	NM_002586	exon1	c.G54A	p.L18L	CAATCCCAGGCCC	.	11	6	0	0	C|0.874;T|0.126	1	0	1	0	0	T	32157639	C	T	32157639	2	4	11	1	0	0	0	0	0	0	0	1	11522	581	21	3		3	PBX2	6	32157639	Silent	SNP	C	TCGA-OR-A5JC-01A-11D-A29I-10	833539	32157639	138957428	28	2712										
HTR1B	3351	bcgsc.ca	37	chr6	78172260	78172260	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0707070707070707	7	0.871929730042091	1.418125	2.70119047619048	0.868239795918367	1	1	0	actcgcactttgacttggttCacatacacaggagatccgga	9	11	1	2	rs6296	bycluster;byfrequency;by1000genomes	TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	.	HTR1B-90	NM_000863	exon1	c.G861C	p.V287V	TTGGTTCACATAC	.	63	4	34	0	C|0.650;G|0.350	2	2	0	0	0	G	78172260	C	G	78172260	2	3	11	1	0	0	0	0	0	0	0	1	7458	813	29	3		3	HTR1B	6	78172260	Silent	SNP	C	TCGA-OR-A5JC-01A-11D-A29I-10	46014621	78172260	92942807	29	2713										
POU3F2	5454	hgsc.bcm.edu	37	chr6	99283376	99283376	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0707070707070707	7	0.871929730042091	1.418125	2.70119047619048	0.868239795918367	1	1	0	gccggcgggcagccggccggTctgcaccaccacggcctgcg	16	18	1	0	rs195860		TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	.	POU3F2-90	NM_005604	exon1	c.T627G	p.G209G	GGCCGGTCTGCAC	.	5	5	0	0	T|0.089;G|0.911	0	0	0	0	0	G	99283376	T	G	99283376	2	3	11	1	0	0	0	0	0	0	0	1	12304	1654	58	5		5	POU3F2	6	99283376	Silent	SNP	T	TCGA-OR-A5JC-01A-11D-A29I-10	21111116	99283376	71831691	30	2714										
UTRN	7402	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr6	144878365	144878365	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.0707070707070707	7	0.871929730042091	1.418125	2.70119047619048	0.868239795918367	1	1	0	acgtcctgcagaaactcctgGaggaatatgggagtgatgac	13	8	0	3	novel		TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	.	UTRN-95	NM_007124	exon49	c.G7207C	p.E2403Q	CTCCTGGAGGAAT	.	153	11	120	0	.	0	0	0	0	0	C	144878365	G	C	144878365	3	2	11	1	0	0	0	0	1	0	0	0	17141	1175	41	3	7401	3	UTRN	6	144878365	Missense_Mutation	SNP	G	TCGA-OR-A5JC-01A-11D-A29I-10	45594989	144878365	26236702	31	2715										
ZC3H12D	340152	hgsc.bcm.edu	37	chr6	149772190	149772190	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0707070707070707	7	0.871929730042091	1.418125	2.70119047619048	0.868239795918367	1	1	0	gagctgcaggccgggcggagGcgggaggtcgcccggggaga	23	10	0	1	rs112722576		TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	.	.	NM_207360	exon6	c.C1213T	p.P405S	GCGGAGGCGGGAG	.	5	5	0	0	G|0.668;A|0.332	0	0	0	0	0	A	149772190	G	A	149772190	3	1	11	1	0	0	0	0	1	0	0	0	17601	1203	42	3	374	3	ZC3H12D	6	149772190	Missense_Mutation	SNP	G	TCGA-OR-A5JC-01A-11D-A29I-10	4893825	149772190	21342877	32	2716										
SYNE1	23345	bcgsc.ca	37	chr6	152576080	152576080	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0707070707070707	7	0.871929730042091	1.418125	2.70119047619048	0.868239795918367	1	1	0	tcgttgattcactactgagtCtagcaaggataacctgccca	8	11	2	2	novel		TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	.	SYNE1-607	NM_182961	exon104	c.G19405T	p.D6469Y	CTGAGTCTAGCAA	.	122	6	96	0	.	0	0	0	0	0	A	152576080	C	A	152576080	3	1	11	1	0	0	0	0	1	0	0	0	15482	913	32	3	7233	3	SYNE1	6	152576080	Missense_Mutation	SNP	C	TCGA-OR-A5JC-01A-11D-A29I-10	2803890	152576080	18538987	33	2717										
FBXO5	26271	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr6	153296478	153296481	+	Frame_Shift_Del	DEL	TAAG	TAAG	-													0.0707070707070707	7	0.871929730042091	1.418125	2.70119047619048	0.868239795918367	1	1	0	ttctatttcatttgtactatTaagtgtctgttgcacatgtt					novel		TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	TAAG	TAAG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	.	FBXO5-658	NM_012177	exon2	c.379_382del	p.127_128del	TACTATTAAGTGT	.	133	18	114	0	.	0	0	0	0	0	-	153296481	TAAG	-	153296478	7	5	11	1	0	1	0	1	0	0	0	0	5777	1754	61	0	977	0	FBXO5	6	153296478	Frame_Shift_Del	DEL	TAAG	TCGA-OR-A5JC-01A-11D-A29I-10	720398	153296478	17818589	34	2718										
GARS	2617	hgsc.bcm.edu	37	chr7	30634661	30634661	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0707070707070707	7	0.871929730042091	1.418125	2.70119047619048	0.868239795918367	1	1	0	ccctcagcgcggcctcctgcCccccgatctccttgcccgcc	8	24	2	0	rs1049402	byfrequency	TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	.	GARS-91	NM_002047	exon1	c.C124G	p.P42A	TCCTGCCCCCCGA	.	6	6	0	0	C|0.329;G|0.671	4	0	4	0	0	G	30634661	C	G	30634661	3	3	11	1	0	0	0	0	1	0	0	0	6262	623	22	3	126	3	GARS	7	30634661	Missense_Mutation	SNP	C	TCGA-OR-A5JC-01A-11D-A29I-10		30634661	128504002	35	2719										
OR2AE1	81392	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	99473846	99473846	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0707070707070707	7	0.871929730042091	1.418125	2.70119047619048	0.868239795918367	1	1	0	gtagaacacagaaccaacttTgttctgcaatagagtgcact	8	9	1	3	novel		TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	.	OR2AE1-90	NM_001005276	exon1	c.A811G	p.K271E	CAACTTTGTTCTG	.	69	8	93	0	.	0	0	0	0	0	C	99473846	T	C	99473846	3	2	11	1	0	0	0	0	1	0	0	0	11012	1821	63	4	164	4	OR2AE1	7	99473846	Missense_Mutation	SNP	T	TCGA-OR-A5JC-01A-11D-A29I-10	68839185	99473846	59664817	36	2720										
ZC3HC1	51530	ucsc.edu;bcgsc.ca	37	chr7	129664312	129664312	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0707070707070707	7	0.871929730042091	1.418125	2.70119047619048	0.868239795918367	1	1	0	cctcatacattgcgaacatgTtatcagggagagctgcatgg	11	9	2	1	rs1464890	byfrequency	TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	.	ZC3HC1-90	NM_016478	exon7	c.A811G	p.T271A	AACATGTTATCAG	.	54	5	55	0	A|0.003;C|0.460	20	20	0	0	0	C	129664312	T	C	129664312	3	2	11	1	0	0	0	0	1	0	0	0	17614	1725	60	4	713	4	ZC3HC1	7	129664312	Missense_Mutation	SNP	T	TCGA-OR-A5JC-01A-11D-A29I-10	30190466	129664312	29474351	37	2721										
TAS2R38	5726	bcgsc.ca	37	chr7	141672705	141672705	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0707070707070707	7	0.871929730042091	1.418125	2.70119047619048	0.868239795918367	1	1	0	ggggcacagagatgaaggcaGcacaggatgatatcacaaag	14	7	1	3	rs1726866	byfrequency	TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	.	TAS2R38-92	NM_176817	exon1	c.C785T	p.A262V	AAGGCAGCACAGG	.	207	6	170	0	G|0.560;A|0.440	0	0	0	0	0	A	141672705	G	A	141672705	3	1	11	1	0	0	0	0	1	0	0	0	15612	971	34	3	220	3	TAS2R38	7	141672705	Missense_Mutation	SNP	G	TCGA-OR-A5JC-01A-11D-A29I-10	12008393	141672705	17465958	38	2722										
CSMD1	64478	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr8	3216707	3216707	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0707070707070707	7	0.871929730042091	1.418125	2.70119047619048	0.868239795918367	1	1	0	cagaggtgcactccacacacGgcggcccccacccaggcagg	12	18	0	1	novel		TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	.	CSMD1-86	NM_033225	exon21	c.C3271T	p.R1091C	ACACACGGCGGCC	.	134	23	68	0	.	0	0	0	0	0	A	3216707	G	A	3216707	3	1	11	1	0	0	0	0	1	0	0	0	3950	1116	39	1	7623	1	CSMD1	8	3216707	Missense_Mutation	SNP	G	TCGA-OR-A5JC-01A-11D-A29I-10		3216707	143147315	39	2723										
EGR3	1960	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr8	22548147	22548147	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0707070707070707	7	0.871929730042091	1.418125	2.70119047619048	0.868239795918367	1	1	0	cttgcgcccgcagaactcgcAggcaaagggcttctcgcccg	12	16	1	1	novel		TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	.	EGR3-90	NM_004430	exon2	c.T1003A	p.C335S	ACTCGCAGGCAAA	.	313	123	90	0	.	0	0	0	0	0	T	22548147	A	T	22548147	3	4	11	1	0	0	0	0	1	0	0	0	4984	188	7	5	164	5	EGR3	8	22548147	Missense_Mutation	SNP	A	TCGA-OR-A5JC-01A-11D-A29I-10	19331440	22548147	123815875	40	2724										
PLEC	5339	hgsc.bcm.edu	37	chr8	144998514	144998514	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0707070707070707	7	0.871929730042091	1.418125	2.70119047619048	0.868239795918367	1	1	0	cgccgcaggcgctcgttctcCgcctccttctccttgagcgc	10	19	2	1	rs75586449	byfrequency	TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	.	PLEC-141	NM_201380	exon31	c.G5994A	p.A1998A	GTTCTCCGCCTCC	.	5	5	0	0	C|0.961;T|0.039	7	1	6	0	0	T	144998514	C	T	144998514	2	4	11	1	0	0	0	0	0	0	0	1	12081	639	23	1		1	PLEC	8	144998514	Silent	SNP	C	TCGA-OR-A5JC-01A-11D-A29I-10	122450367	144998514	1365508	41	2725										
PLEC	5339	hgsc.bcm.edu	37	chr8	144998793	144998793	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0707070707070707	7	0.871929730042091	1.418125	2.70119047619048	0.868239795918367	1	1	0	tcagccctcgccttgctggcCagcagcacctccatctcggc	9	19	2	0	rs186670912	by1000genomes	TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	.	PLEC-141	NM_201380	exon31	c.G5715A	p.L1905L	GCTGGCCAGCAGC	.	10	6	2	0	C|0.997;T|0.003	9	3	6	0	0	T	144998793	C	T	144998793	2	4	11	1	0	0	0	0	0	0	0	1	12081	581	21	3		3	PLEC	8	144998793	Silent	SNP	C	TCGA-OR-A5JC-01A-11D-A29I-10	279	144998793	1365229	42	2726										
KIAA1045	23349	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr9	34976195	34976195	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0707070707070707	7	0.871929730042091	1.418125	2.70119047619048	0.868239795918367	1	1	0	ggaggaaatgtatagcctcaCggagacctttcagcggtgta	13	8	2	1	novel		TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	.	KIAA1045-69	NM_015297	exon4	c.C611T	p.T204M	GCCTCACGGAGAC	.	79	22	71	0	.	0	0	0	0	0	T	34976195	C	T	34976195	3	4	11	1	0	0	0	0	1	0	0	0	8228	536	19	1	621	1	KIAA1045	9	34976195	Missense_Mutation	SNP	C	TCGA-OR-A5JC-01A-11D-A29I-10		34976195	106237236	43	2727										
FRMPD1	22844	ucsc.edu;bcgsc.ca	37	chr9	37745413	37745413	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0707070707070707	7	0.871929730042091	1.418125	2.70119047619048	0.868239795918367	1	1	0	accaacgtatttcaggaggaGtctaggaaggattcaggtga	13	6	3	1	rs3747541	byfrequency	TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	.	FRMPD1-159	NM_014907	exon16	c.G3384A	p.E1128E	GGAGGAGTCTAGG	.	65	6	73	0	G|0.618;A|0.382	0	0	0	0	0	A	37745413	G	A	37745413	2	1	11	1	0	0	0	0	0	0	0	1	6076	1020	36	3		3	FRMPD1	9	37745413	Silent	SNP	G	TCGA-OR-A5JC-01A-11D-A29I-10	2769218	37745413	103468018	44	2728										
SLC34A3	142680	hgsc.bcm.edu	37	chr9	140130532	140130532	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0707070707070707	7	0.871929730042091	1.418125	2.70119047619048	0.868239795918367	1	1	0	gcccgttaccgctgggtggcTggggtctacctgctgctcgg	16	13	1	0	rs144666114	byfrequency	TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	.	SLC34A3-90	NM_001177317	exon13	c.T1464C	p.A488A	GGTGGCTGGGGTC	.	72	4	5	0	T|1.000;C|0.000	0	0	0	0	0	C	140130532	T	C	140130532	2	2	11	1	0	0	0	0	0	0	0	1	14604	1567	55	4		4	SLC34A3	9	140130532	Silent	SNP	T	TCGA-OR-A5JC-01A-11D-A29I-10	102385119	140130532	1082899	45	2729										
TUBB8	347688	broad.mit.edu	37	chr10	95170	95170	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0707070707070707	7	0.871929730042091	1.418125	2.70119047619048	0.868239795918367	1	1	0	ccgatctgcgtgagcacgatCtccctcatggccaaggcggg	13	14	3	1	novel		TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	.	TUBB8-69	NM_177987	exon1	c.G9A	p.E3E	CACGATCTCCCTC	.	176	11	62	0	.	0	0	0	0	0	T	95170	C	T	95170	2	4	11	1	0	0	0	0	0	0	0	1	16799	912	32	3		3	TUBB8	10	95170	Silent	SNP	C	TCGA-OR-A5JC-01A-11D-A29I-10		95170	135439577	46	2730										
MYO3A	53904	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr10	26357698	26357698	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0707070707070707	7	0.871929730042091	1.418125	2.70119047619048	0.868239795918367	1	1	0	ttattttattttattgcagaAtacagtctcagagcaacttg	6	6	1	2	novel		TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	.	MYO3A-1007	NM_017433	exon12	c.A1055G	p.N352S	TGCAGAATACAGT	.	30	9	24	0	.	0	0	0	0	0	G	26357698	A	G	26357698	3	3	11	1	0	0	0	0	1	0	0	0	10104	115	4	4	1093	4	MYO3A	10	26357698	Missense_Mutation	SNP	A	TCGA-OR-A5JC-01A-11D-A29I-10	26262528	26357698	109177049	47	2731										
AGAP11	119385	bcgsc.ca	37	chr10	88768253	88768253	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0707070707070707	7	0.871929730042091	1.418125	2.70119047619048	0.868239795918367	1	1	0	ctgccaacacacccacgcccAtttgcaagcagtccatgggc	8	17	0	0	rs2641563	byfrequency	TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	.	.	NM_133447	exon12	c.A244G	p.I82V	ACGCCCATTTGCA	.	215	10	170	0	A|0.215;G|0.785	1	1	0	0	0	G	88768253	A	G	88768253	3	3	11	1	0	0	0	0	1	0	0	0	367	217	8	4	258	4	AGAP11	10	88768253	Missense_Mutation	SNP	A	TCGA-OR-A5JC-01A-11D-A29I-10	62410555	88768253	46766494	48	2732										
LGI1	9211	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr10	95537350	95537350	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0707070707070707	7	0.871929730042091	1.418125	2.70119047619048	0.868239795918367	1	1	0	aatttcaagacatactttccGgggactaaagtcattaattc	6	8	2	1	novel		TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	.	LGI1-517	NM_005097	exon4	c.G407T	p.R136L	CTTTCCGGGGACT	.	96	32	65	0	.	0	0	0	0	0	T	95537350	G	T	95537350	3	4	11	1	0	0	0	0	1	0	0	0	8774	1116	39	2	421	2	LGI1	10	95537350	Missense_Mutation	SNP	G	TCGA-OR-A5JC-01A-11D-A29I-10	6769097	95537350	39997397	49	2733										
CTBP2	1488	ucsc.edu	37	chr10	126715075	126715075	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0707070707070707	7	0.871929730042091	1.418125	2.70119047619048	0.868239795918367	1	1	0	ccaggggcagaataggtggcTgccgtctccaggaggtgctg	17	10	1	1	rs3781413	byfrequency	TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	.	CTBP2-90	NM_022802	exon1	c.A1254G	p.A418A	GGTGGCTGCCGTC	.	43	23	12	2	T|0.892;C|0.108	0	0	0	0	0	C	126715075	T	C	126715075	2	2	11	1	0	0	0	0	0	0	0	1	4004	1567	55	4		4	CTBP2	10	126715075	Silent	SNP	T	TCGA-OR-A5JC-01A-11D-A29I-10	31177725	126715075	8819672	50	2734										
MUC6	4588	bcgsc.ca	37	chr11	1017710	1017710	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0707070707070707	7	0.871929730042091	1.418125	2.70119047619048	0.868239795918367	1	1	0	gcatggtgtgtggaggaagtGtgtgaatgtagggatgtaga	19	1	0	2	rs113964902		TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	.	MUC6-23	NM_005961	exon31	c.C5091A	p.H1697Q	GGAAGTGTGTGAA	.	739	28	652	14	G|0.500;T|0.500	0	0	0	0	0	T	1017710	G	T	1017710	3	4	11	1	0	0	0	0	1	0	0	0	10008	1368	48	3	2240	3	MUC6	11	1017710	Missense_Mutation	SNP	G	TCGA-OR-A5JC-01A-11D-A29I-10		1017710	133988806	51	2735										
OR52E6	390078	broad.mit.edu	37	chr11	5862278	5862278	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0707070707070707	7	0.871929730042091	1.418125	2.70119047619048	0.868239795918367	1	1	0	aggattgagggtgggaggaaCaaccacatatagattagcca	13	6	0	2	novel		TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	.	OR52E6-68	NM_001005167	exon1	c.G850T	p.V284F	GAGGAACAACCAC	.	127	5	114	0	.	0	0	0	0	0	A	5862278	C	A	5862278	3	1	11	1	0	0	0	0	1	0	0	0	11146	478	17	3	93	3	OR52E6	11	5862278	Missense_Mutation	SNP	C	TCGA-OR-A5JC-01A-11D-A29I-10	4844568	5862278	129144238	52	2736										
DNHD1	144132	broad.mit.edu	37	chr11	6569896	6569896	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0707070707070707	7	0.871929730042091	1.418125	2.70119047619048	0.868239795918367	1	1	0	ctgaacggctcttgtatgtgGtggacctgcttctgtcaggg	14	9	3	1	rs11606889	byfrequency	TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	.	DNHD1-24	NM_144666	exon24	c.G7120A	p.V2374M	TATGTGGTGGACC	.	47	3	60	1	G|0.887;A|0.113	0	0	0	0	0	A	6569896	G	A	6569896	3	1	11	1	0	0	0	0	1	0	0	0	4679	1261	44	3	7215	3	DNHD1	11	6569896	Missense_Mutation	SNP	G	TCGA-OR-A5JC-01A-11D-A29I-10	707618	6569896	128436620	53	2737										
MTMR2	8898	hgsc.bcm.edu	37	chr11	95595266	95595434	+	Frame_Shift_Del	DEL	CCTAAAGAAGGAAAGAAAAAATAATTAAAACTGAGCAATTAATACTGTCCAATTATAGAGCTGATCAAAATCTTAATCAGAAATGCTTTAATTAGAAATGATCAGAAATGAACAAAACTAGCTACAAACAACACACTCATGTACATACAAAAATCTAATCTGACTCTTA	CCTAAAGAAGGAAAGAAAAAATAATTAAAACTGAGCAATTAATACTGTCCAATTATAGAGCTGATCAAAATCTTAATCAGAAATGCTTTAATTAGAAATGATCAGAAATGAACAAAACTAGCTACAAACAACACACTCATGTACATACAAAAATCTAATCTGACTCTTA	-													0.0707070707070707	7	0.871929730042091	1.418125	2.70119047619048	0.868239795918367	1	1	0	atctaaaacaaatgggggatCctaaagaaggaaagaaaaaa					novel		TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	CCTAAAGAAGGAAAGAAAAAATAATTAAAACTGAGCAATTAATACTGTCCAATTATAGAGCTGATCAAAATCTTAATCAGAAATGCTTTAATTAGAAATGATCAGAAATGAACAAAACTAGCTACAAACAACACACTCATGTACATACAAAAATCTAATCTGACTCTTA	CCTAAAGAAGGAAAGAAAAAATAATTAAAACTGAGCAATTAATACTGTCCAATTATAGAGCTGATCAAAATCTTAATCAGAAATGCTTTAATTAGAAATGATCAGAAATGAACAAAACTAGCTACAAACAACACACTCATGTACATACAAAAATCTAATCTGACTCTTA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	.	MTMR2-91	NM_016156	exon5	c.358_358del	p.120_120del	GGGGATCCTAAAG	.	31	0	48	0	.	0	0	0	0	0	-	95595434	CCTAAAGAAGGAAAGAAAAAATAATTAAAACTGAGCAATTAATACTGTCCAATTATAGAGCTGATCAAAATCTTAATCAGAAATGCTTTAATTAGAAATGATCAGAAATGAACAAAACTAGCTACAAACAACACACTCATGTACATACAAAAATCTAATCTGACTCTTA	-	95595266	7	5	11	1	0	1	0	1	0	0	0	0	9972	869	30	0	1617	0	MTMR2	11	95595266	Frame_Shift_Del	DEL	CCTAAAGAAGGAAAGAAAAAATAATTAAAACTGAGCAATTAATACTGTCCAATTATAGAGCTGATCAAAATCTTAATCAGAAATGCTTTAATTAGAAATGATCAGAAATGAACAAAACTAGCTACAAACAACACACTCATGTACATACAAAAATCTAATCTGACTCTTA	TCGA-OR-A5JC-01A-11D-A29I-10	89025370	95595266	39411250	54	2738										
ZC3H12C	85463	bcgsc.ca	37	chr11	110035301	110035301	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0707070707070707	7	0.871929730042091	1.418125	2.70119047619048	0.868239795918367	1	1	0	tcagatccaagcataaggacAcaagtctaccaagacctaga	7	11	2	3	rs1026607	byfrequency	TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	.	ZC3H12C-68	NM_033390	exon6	c.A1491G	p.T497T	AAGGACACAAGTC	.	94	5	95	0	A|0.729;G|0.271	1	1	0	0	0	G	110035301	A	G	110035301	2	3	11	1	0	0	0	0	0	0	0	1	17600	146	6	4		4	ZC3H12C	11	110035301	Silent	SNP	A	TCGA-OR-A5JC-01A-11D-A29I-10	14440035	110035301	24971215	55	2739										
PA2G4	5036	broad.mit.edu;bcgsc.ca	37	chr12	56504205	56504205	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0707070707070707	7	0.871929730042091	1.418125	2.70119047619048	0.868239795918367	1	1	0	aggaccatgaaaaagctgaaTttgaggtacatgaagtatat	10	4	0	4	novel		TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	.	PA2G4-68	NM_006191	exon8	c.T652A	p.F218I	GCTGAATTTGAGG	.	251	11	153	0	.	178	175	3	0	0	A	56504205	T	A	56504205	3	1	11	1	0	0	0	0	1	0	0	0	11390	1493	52	5	682	5	PA2G4	12	56504205	Missense_Mutation	SNP	T	TCGA-OR-A5JC-01A-11D-A29I-10		56504205	77347690	56	2740										
CCDC62	84660	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	123273380	123273380	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0707070707070707	7	0.871929730042091	1.418125	2.70119047619048	0.868239795918367	1	1	0	aaatgctagagcatgccctaCgtgatgccaagatggcggag	13	9	0	3	novel		TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	.	CCDC62-157	NM_201435	exon5	c.C574T	p.R192C	GCCCTACGTGATG	.	176	46	131	0	.	0	0	0	0	0	T	123273380	C	T	123273380	3	4	11	1	0	0	0	0	1	0	0	0	2839	536	19	1	592	1	CCDC62	12	123273380	Missense_Mutation	SNP	C	TCGA-OR-A5JC-01A-11D-A29I-10	66769175	123273380	10578515	57	2741										
NCOR2	9612	ucsc.edu	37	chr12	124856618	124856618	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0707070707070707	7	0.871929730042091	1.418125	2.70119047619048	0.868239795918367	1	1	0	acctcgtctgcactgcaggtAgcactggagtcgctgtcctg	12	13	1	0	rs7961196	byfrequency	TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	.	NCOR2-229	NM_006312	exon22	c.T2757C	p.A919A	GCAGGTAGCACTG	.	58	28	15	0	A|0.698;G|0.302	3	1	2	0	0	G	124856618	A	G	124856618	2	3	11	1	0	0	0	0	0	0	0	1	10265	407	15	4		4	NCOR2	12	124856618	Silent	SNP	A	TCGA-OR-A5JC-01A-11D-A29I-10	1583238	124856618	8995277	58	2742										
PABPC3	5042	bcgsc.ca	37	chr13	25671122	25671122	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0707070707070707	7	0.871929730042091	1.418125	2.70119047619048	0.868239795918367	1	1	0	ctcaatggaaaacaaatttaCgttggtcgagctcagaaaaa	8	7	2	1	rs79072440	bycluster;byfrequency	TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	.	PABPC3-72	NM_030979	exon1	c.C786T	p.Y262Y	AATTTACGTTGGT	.	125	7	127	1	C|0.999;T|0.001	265	0	265	0	0	T	25671122	C	T	25671122	2	4	11	1	0	0	0	0	0	0	0	1	11394	547	19	1		1	PABPC3	13	25671122	Silent	SNP	C	TCGA-OR-A5JC-01A-11D-A29I-10		25671122	89498756	59	2743										
OR4N2	390429	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	20295677	20295677	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0707070707070707	7	0.871929730042091	1.418125	2.70119047619048	0.868239795918367	1	1	0	tgacccagtctcaagatattCagctcctggtctttgtgcta	8	11	3	2	novel		TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	.	OR4N2-71	NM_001004723	exon1	c.C70G	p.Q24E	GATATTCAGCTCC	.	356	37	239	0	.	0	0	0	0	0	G	20295677	C	G	20295677	3	3	11	1	0	0	0	0	1	0	0	0	11106	827	29	3	72	3	OR4N2	14	20295677	Missense_Mutation	SNP	C	TCGA-OR-A5JC-01A-11D-A29I-10		20295677	87053863	60	2744			1	5		5	5	186	C		4.938757e-15
OR4N2	390429	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	20295722	20295722	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0707070707070707	7	0.871929730042091	1.418125	2.70119047619048	0.868239795918367	1	1	0	taatattctacttcatcatcCtccctggaaattttctcatt	2	11	4	0	novel		TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	.	OR4N2-71	NM_001004723	exon1	c.C115G	p.L39V	ATCATCCTCCCTG	.	260	30	210	0	.	0	0	0	0	0	G	20295722	C	G	20295722	3	3	11	1	0	0	0	0	1	0	0	0	11106	681	24	3	117	3	OR4N2	14	20295722	Missense_Mutation	SNP	C	TCGA-OR-A5JC-01A-11D-A29I-10	45	20295722	87053818	61	2745			1	5		5	5	186	C		4.938757e-15
OR4N2	390429	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr14	20295790	20295790	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0707070707070707	7	0.871929730042091	1.418125	2.70119047619048	0.868239795918367	1	1	0	ctcacagcccccctctatttCtttctgggcaacttggcctt	6	16	4	0	novel		TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	.	OR4N2-71	NM_001004723	exon1	c.C183G	p.F61L	CTATTTCTTTCTG	.	213	30	191	0	.	0	0	0	0	0	G	20295790	C	G	20295790	3	3	11	1	0	0	0	0	1	0	0	0	11106	912	32	3	185	3	OR4N2	14	20295790	Missense_Mutation	SNP	C	TCGA-OR-A5JC-01A-11D-A29I-10	68	20295790	87053750	62	2746			1	5		5	5	186	C		4.938757e-15
OR4N2	390429	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	20295819	20295819	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0707070707070707	7	0.871929730042091	1.418125	2.70119047619048	0.868239795918367	1	1	0	caacttggccttcctggatgCatcctactccttcattgtgg	8	13	1	0	novel		TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	.	OR4N2-71	NM_001004723	exon1	c.C212G	p.A71G	TGGATGCATCCTA	.	240	26	183	0	.	0	0	0	0	0	G	20295819	C	G	20295819	3	3	11	1	0	0	0	0	1	0	0	0	11106	710	25	3	214	3	OR4N2	14	20295819	Missense_Mutation	SNP	C	TCGA-OR-A5JC-01A-11D-A29I-10	29	20295819	87053721	63	2747			1	5		5	5	186	C		4.938757e-15
OR4N2	390429	hgsc.bcm.edu;bcgsc.ca	37	chr14	20295862	20295862	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0707070707070707	7	0.871929730042091	1.418125	2.70119047619048	0.868239795918367	1	1	0	ccccggatgttggtggacttCctctctgcgaagaagataat	11	10	1	2	rs139052676	byfrequency;alternate_allele	TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	.	OR4N2-71	NM_001004723	exon1	c.C255T	p.F85F	GGACTTCCTCTCT	.	232	15	192	0	C|1.000;G|0.000	0	0	0	0	0	T	20295862	C	T	20295862	2	4	11	1	0	0	0	0	0	0	0	1	11106	854	30	3		3	OR4N2	14	20295862	Silent	SNP	C	TCGA-OR-A5JC-01A-11D-A29I-10	43	20295862	87053678	64	2748			1	5		5	5	186	C		4.938757e-15
C14orf93	60686	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	23456429	23456429	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0707070707070707	7	0.871929730042091	1.418125	2.70119047619048	0.868239795918367	1	1	0	tcttggctgtagattttattCatccttttccaccttgattt	5	9	2	2	novel		TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	.	C14orf93-91	NM_021944	exon7	c.G1612A	p.E538K	TTTATTCATCCTT	.	111	14	83	0	.	2	2	0	0	0	T	23456429	C	T	23456429	3	4	11	1	0	0	0	0	1	0	0	0	1786	835	29	3	8	3	C14orf93	14	23456429	Missense_Mutation	SNP	C	TCGA-OR-A5JC-01A-11D-A29I-10	3160567	23456429	83893111	65	2749										
ADCY4	196883	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr14	24799400	24799400	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0707070707070707	7	0.871929730042091	1.418125	2.70119047619048	0.868239795918367	1	1	0	gcccggcacatgtccaggccCatgcgcacgcagttgatggc	13	15	0	1	novel		TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	.	ADCY4-93	NM_001198592	exon8	c.G1032T	p.M344I	CAGGCCCATGCGC	.	127	22	113	0	.	2	2	0	0	0	A	24799400	C	A	24799400	3	1	11	1	0	0	0	0	1	0	0	0	296	594	21	3	2277	3	ADCY4	14	24799400	Missense_Mutation	SNP	C	TCGA-OR-A5JC-01A-11D-A29I-10	1342971	24799400	82550140	66	2750										
INSM2	84684	broad.mit.edu	37	chr14	36004658	36004658	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0707070707070707	7	0.871929730042091	1.418125	2.70119047619048	0.868239795918367	1	1	0	gagccaccgctgcctcagggCccctacacggagggggtgtt	15	14	1	0	novel		TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	.	INSM2-226	NM_032594	exon1	c.C1200A	p.G400G	TCAGGGCCCCTAC	.	76	7	16	0	.	0	0	0	0	0	A	36004658	C	A	36004658	2	1	11	1	0	0	0	0	0	0	0	1	7793	726	26	3		3	INSM2	14	36004658	Silent	SNP	C	TCGA-OR-A5JC-01A-11D-A29I-10	11205258	36004658	71344882	67	2751										
PRPF39	55015	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr14	45564512	45564512	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0707070707070707	7	0.871929730042091	1.418125	2.70119047619048	0.868239795918367	1	1	0	caggcaacagttcagaggtaGtggtagaacatcctactgat	11	8	1	3	novel		TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	.	PRPF39-70	NM_017922	exon2	c.G70C	p.V24L	GAGGTAGTGGTAG	.	239	50	226	0	.	0	0	0	0	0	C	45564512	G	C	45564512	3	2	11	1	0	0	0	0	1	0	0	0	12601	1029	36	3	72	3	PRPF39	14	45564512	Missense_Mutation	SNP	G	TCGA-OR-A5JC-01A-11D-A29I-10	9559854	45564512	61785028	68	2752										
PRKCH	5583	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr14	61917623	61917623	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0707070707070707	7	0.871929730042091	1.418125	2.70119047619048	0.868239795918367	1	1	0	gcatccacaactacaaagtgCcaacattctgcgatcactgt	6	13	2	0	novel		TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	.	PRKCH-1063	NM_006255	exon6	c.C766G	p.P256A	AAAGTGCCAACAT	.	150	24	139	1	.	0	0	0	0	0	G	61917623	C	G	61917623	3	3	11	1	0	0	0	0	1	0	0	0	12545	739	26	3	788	3	PRKCH	14	61917623	Missense_Mutation	SNP	C	TCGA-OR-A5JC-01A-11D-A29I-10	16353111	61917623	45431917	69	2753										
WDR25	79446	bcgsc.ca	37	chr14	100996312	100996312	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0707070707070707	7	0.871929730042091	1.418125	2.70119047619048	0.868239795918367	1	1	0	gcctgtgtcggcaccacctaTcaccccgtgctgccctccgt	9	19	1	0	rs13065	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	.	WDR25-90	NM_001161476	exon7	c.T1569C	p.Y523Y	CACCTATCACCCC	.	200	7	89	1	T|0.409;C|0.591	23	23	0	0	0	C	100996312	T	C	100996312	2	2	11	1	0	0	0	0	0	0	0	1	17320	1442	50	4		4	WDR25	14	100996312	Silent	SNP	T	TCGA-OR-A5JC-01A-11D-A29I-10	39078689	100996312	6353228	70	2754										
SPTBN5	51332	broad.mit.edu	37	chr15	42167249	42167249	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0707070707070707	7	0.871929730042091	1.418125	2.70119047619048	0.868239795918367	1	1	0	agctgctccagctgctccttTgcatcctgggagggacgcat	12	13	0	0	rs62002142		TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	.	SPTBN5-91	NM_016642	exon23	c.A4188G	p.A1396A	CTCCTTTGCATCC	.	80	4	50	0	T|0.995;C|0.005	0	0	0	0	0	C	42167249	T	C	42167249	2	2	11	1	0	0	0	0	0	0	0	1	15159	1799	63	4		4	SPTBN5	15	42167249	Silent	SNP	T	TCGA-OR-A5JC-01A-11D-A29I-10		42167249	60364143	71	2755										
LACTB	114294	hgsc.bcm.edu	37	chr15	63414083	63414083	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0707070707070707	7	0.871929730042091	1.418125	2.70119047619048	0.868239795918367	1	1	0	gagacgccatgtaccggctcAtgtcagcagtgactgcccgg	13	13	2	2	rs34317102	byfrequency	TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	.	LACTB-90	NM_171846	exon1	c.A13C	p.M5L	CGGCTCATGTCAG	.	5	5	0	0	A|0.226;C|0.774	0	0	0	0	0	C	63414083	A	C	63414083	3	2	11	1	0	0	0	0	1	0	0	0	8619	217	8	5	15	5	LACTB	15	63414083	Missense_Mutation	SNP	A	TCGA-OR-A5JC-01A-11D-A29I-10	21246834	63414083	39117309	72	2756										
ADAMTS17	170691	broad.mit.edu	37	chr15	100871168	100871168	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0707070707070707	7	0.871929730042091	1.418125	2.70119047619048	0.868239795918367	1	1	0	gggtcaaggaccatttgcgcCtgatcagatgttctcgtcca	11	11	3	2	rs143689354	byfrequency	TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	.	ADAMTS17-228	NM_139057	exon3	c.G542A	p.R181K	TTGCGCCTGATCA	.	189	5	98	0	C|0.999;T|0.001	2	2	0	0	0	T	100871168	C	T	100871168	3	4	11	1	0	0	0	0	1	0	0	0	262	681	24	3	2825	3	ADAMTS17	15	100871168	Missense_Mutation	SNP	C	TCGA-OR-A5JC-01A-11D-A29I-10	37457085	100871168	1660224	73	2757										
MLST8	64223	ucsc.edu	37	chr16	2256104	2256104	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0707070707070707	7	0.871929730042091	1.418125	2.70119047619048	0.868239795918367	1	1	0	accatgaacacctccccaggCacggtgggcagtgacccggt	12	15	0	2	novel		TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	.	MLST8-392	NM_001199174	exon2	c.C18A	p.G6G	CCCAGGCACGGTG	.	260	4	115	2	.	15	10	5	0	0	A	2256104	C	A	2256104	2	1	11	1	0	0	0	0	0	0	0	1	9662	697	25	3		3	MLST8	16	2256104	Silent	SNP	C	TCGA-OR-A5JC-01A-11D-A29I-10		2256104	88098649	74	2758										
NLRC5	84166	broad.mit.edu;bcgsc.ca	37	chr16	57101716	57101716	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0707070707070707	7	0.871929730042091	1.418125	2.70119047619048	0.868239795918367	1	1	0	gctgcagagcctcctgctgtCcctctctgagctgaagacat	10	14	1	4	novel		TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	.	NLRC5-159	NM_032206	exon35	c.C4475A	p.S1492Y	TGCTGTCCCTCTC	.	198	7	127	0	.	14	13	1	0	0	A	57101716	C	A	57101716	3	1	11	1	0	0	0	0	1	0	0	0	10499	855	30	3	4609	3	NLRC5	16	57101716	Missense_Mutation	SNP	C	TCGA-OR-A5JC-01A-11D-A29I-10	54845612	57101716	33253037	75	2759										
SPG7	6687	hgsc.bcm.edu	37	chr16	89574945	89574945	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0707070707070707	7	0.871929730042091	1.418125	2.70119047619048	0.868239795918367	1	1	0	cccgccaggcccgggaggggGcggccgtacatggccagcag	18	15	0	0	rs187330648	by1000genomes	TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	.	SPG7-226	NM_199367	exon1	c.G120A	p.G40G	GAGGGGGCGGCCG	.	6	6	0	0	G|0.979;A|0.021	2	1	1	0	0	A	89574945	G	A	89574945	2	1	11	1	0	0	0	0	0	0	0	1	15081	1190	42	3		3	SPG7	16	89574945	Silent	SNP	G	TCGA-OR-A5JC-01A-11D-A29I-10	32473229	89574945	779808	76	2760										
C17orf97	400566	hgsc.bcm.edu	37	chr17	260182	260182	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0707070707070707	7	0.871929730042091	1.418125	2.70119047619048	0.868239795918367	1	1	0	tccgcgctgagagtcgccgaTtagtcggcatcgggcctcgg	15	13	0	1	rs7502594		TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	.	C17orf97-91	NM_001013672	exon1	c.T49C	p.L17L	CGCCGATTAGTCG	.	6	5	0	0	T|0.657;C|0.343	1	0	1	0	0	C	260182	T	C	260182	2	2	11	1	0	0	0	0	0	0	0	1	1898	1490	52	4		4	C17orf97	17	260182	Silent	SNP	T	TCGA-OR-A5JC-01A-11D-A29I-10		260182	80935028	77	2761										
WDR16	146845	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	9501596	9501596	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0707070707070707	7	0.871929730042091	1.418125	2.70119047619048	0.868239795918367	1	1	0	gatcttccaaatagaaaaatCtggccaactgagtgccaaac	7	10	2	2	novel		TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	.	WDR16-71	NM_145054	exon5	c.C582G	p.I194M	AAAAATCTGGCCA	.	39	16	41	0	.	0	0	0	0	0	G	9501596	C	G	9501596	3	3	11	1	0	0	0	0	1	0	0	0	17314	903	32	3	600	3	WDR16	17	9501596	Missense_Mutation	SNP	C	TCGA-OR-A5JC-01A-11D-A29I-10	9241414	9501596	71693614	78	2762										
MYOCD	93649	hgsc.bcm.edu;bcgsc.ca	37	chr17	12626174	12626174	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0707070707070707	7	0.871929730042091	1.418125	2.70119047619048	0.868239795918367	1	1	0	aaccctttagcttccactgcAgagaggtccattccaactgc	7	14	0	1	novel		TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	.	MYOCD-93	NM_001146312	exon5	c.A264G	p.A88A	CACTGCAGAGAGG	.	61	12	98	0	.	0	0	0	0	0	G	12626174	A	G	12626174	2	3	11	1	0	0	0	0	0	0	0	1	10115	175	7	4		4	MYOCD	17	12626174	Silent	SNP	A	TCGA-OR-A5JC-01A-11D-A29I-10	3124578	12626174	68569036	79	2763										
SARM1	23098	hgsc.bcm.edu	37	chr17	26699121	26699121	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0707070707070707	7	0.871929730042091	1.418125	2.70119047619048	0.868239795918367	1	1	0	cgccatgtcgggcccacggcGgggcgccgagcggctggcgg	20	15	0	0	rs7212814		TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	.	.	NM_015077	exon1	c.G68C	p.R23P	CACGGCGGGGCGC	.	6	6	0	0	G|0.001;C|0.999	0	0	0	0	0	C	26699121	G	C	26699121	3	2	11	1	0	0	0	0	1	0	0	0	13877	1116	39	2	70	2	SARM1	17	26699121	Missense_Mutation	SNP	G	TCGA-OR-A5JC-01A-11D-A29I-10	14072947	26699121	54496089	80	2764										
CIDEA	1149	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr18	12274230	12274230	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0707070707070707	7	0.871929730042091	1.418125	2.70119047619048	0.868239795918367	1	1	0	ccatgtatgagatgtactccGtgtcctacgacatccggtgc	10	12	0	1	novel		TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	.	CIDEA-91	NM_001279	exon4	c.G469A	p.V157M	TACTCCGTGTCCT	.	83	12	114	0	.	0	0	0	0	0	A	12274230	G	A	12274230	3	1	11	1	0	0	0	0	1	0	0	0	3431	1145	40	1	627	1	CIDEA	18	12274230	Missense_Mutation	SNP	G	TCGA-OR-A5JC-01A-11D-A29I-10		12274230	65803018	81	2765										
DCC	1630	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr18	50976874	50976874	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0707070707070707	7	0.871929730042091	1.418125	2.70119047619048	0.868239795918367	1	1	0	tcctgtcttttcccagagccGccaattggacaaatgcaccc	7	15	1	1	novel		TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	.	DCC-225	NM_005215	exon23	c.G3234A	p.P1078P	AGAGCCGCCAATT	.	65	39	78	0	.	0	0	0	0	0	A	50976874	G	A	50976874	2	1	11	1	0	0	0	0	0	0	0	1	4288	1074	38	1		1	DCC	18	50976874	Silent	SNP	G	TCGA-OR-A5JC-01A-11D-A29I-10	38702644	50976874	27100374	82	2766										
TJP3	27134	hgsc.bcm.edu	37	chr19	3739077	3739077	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0707070707070707	7	0.871929730042091	1.418125	2.70119047619048	0.868239795918367	1	1	0	gaggccactggctggcggtgCgcatgggtcgtgacctgcgg	19	11	0	1	rs138219655		TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	.	TJP3-92	NM_001267561	exon13	c.C1603T	p.R535C	GCGGTGCGCATGG	.	20	14	2	0	C|1.000;T|0.000	0	0	0	0	0	T	3739077	C	T	3739077	3	4	11	1	0	0	0	0	1	0	0	0	15968	768	27	1	1721	1	TJP3	19	3739077	Missense_Mutation	SNP	C	TCGA-OR-A5JC-01A-11D-A29I-10		3739077	55389906	83	2767			2	6		2	2	31	C		9.593578e-05
TJP3	27134	hgsc.bcm.edu	37	chr19	3739107	3739107	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0707070707070707	7	0.871929730042091	1.418125	2.70119047619048	0.868239795918367	1	1	0	gtgacctgcgggagcaagagCggggcatcattcccaaccag	14	12	1	2	rs35628485	byfrequency	TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	.	TJP3-92	NM_001267561	exon13	c.C1633T	p.R545W	CAAGAGCGGGGCA	.	9	7	2	0	C|0.996;T|0.004	0	0	0	0	0	T	3739107	C	T	3739107	3	4	11	1	0	0	0	0	1	0	0	0	15968	759	27	1	1751	1	TJP3	19	3739107	Missense_Mutation	SNP	C	TCGA-OR-A5JC-01A-11D-A29I-10	30	3739107	55389876	84	2768			2	6		2	2	31	C		9.593578e-05
CACNA1A	773	hgsc.bcm.edu	37	chr19	13319693	13319693	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0707070707070707	7	0.871929730042091	1.418125	2.70119047619048	0.868239795918367	1	1	0	tccttgtcggggggcgggggAtggtggtggtggtggtggtg	25	4	0	0	rs16051	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	.	CACNA1A-67	NM_001127221	exon46	c.T6660C	p.H2220H	CGGGGGATGGTGG	.	21	7	0	0	A|0.360;G|0.640	0	0	0	0	0	G	13319693	A	G	13319693	2	3	11	1	0	0	0	0	0	0	0	1	2544	330	12	4		4	CACNA1A	19	13319693	Silent	SNP	A	TCGA-OR-A5JC-01A-11D-A29I-10	9580586	13319693	45809290	85	2769										
DYRK1B	9149	broad.mit.edu	37	chr19	40316857	40316857	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0707070707070707	7	0.871929730042091	1.418125	2.70119047619048	0.868239795918367	1	1	0	cacagtctgtgatagggggcCcagggcccccacaatatcgg	13	13	1	1	novel		TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	.	DYRK1B-337	NM_004714	exon10	c.G1481T	p.G494V	GGGGGCCCAGGGC	.	79	4	50	0	.	54	54	0	0	0	A	40316857	C	A	40316857	3	1	11	1	0	0	0	0	1	0	0	0	4866	623	22	3	416	3	DYRK1B	19	40316857	Missense_Mutation	SNP	C	TCGA-OR-A5JC-01A-11D-A29I-10	26997164	40316857	18812126	86	2770										
NR1H2	7376	hgsc.bcm.edu	37	chr19	50881825	50881825	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0707070707070707	7	0.871929730042091	1.418125	2.70119047619048	0.868239795918367	1	1	0	aagaagaagattcggaaacaGcagcaggagtcacagtcaca	11	8	2	3	rs55817866	byfrequency	TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	.	NR1H2-186	NM_007121	exon6	c.G519A	p.Q173Q	GAAACAGCAGCAG	.	135	7	47	0	G|0.903;A|0.097	0	0	0	0	0	A	50881825	G	A	50881825	2	1	11	1	0	0	0	0	0	0	0	1	10646	962	34	3		3	NR1H2	19	50881825	Silent	SNP	G	TCGA-OR-A5JC-01A-11D-A29I-10	10564968	50881825	8247158	87	2771										
ASPDH	554235	hgsc.bcm.edu	37	chr19	51015404	51015404	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0707070707070707	7	0.871929730042091	1.418125	2.70119047619048	0.868239795918367	1	1	0	tggccgcacccaggaggctcTgccagaaggccgtgacggtg	16	13	1	2	rs12977172	byfrequency	TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	.	ASPDH-90	NM_001114598	exon6	c.A797G	p.Q266R	AGGCTCTGCCAGA	.	5	4	0	0	T|0.228;C|0.772	1	1	0	0	0	C	51015404	T	C	51015404	3	2	11	1	0	0	0	0	1	0	0	0	1052	1580	55	4	62	4	ASPDH	19	51015404	Missense_Mutation	SNP	T	TCGA-OR-A5JC-01A-11D-A29I-10	133579	51015404	8113579	88	2772										
SNPH	9751	hgsc.bcm.edu	37	chr20	1286662	1286662	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0707070707070707	7	0.871929730042091	1.418125	2.70119047619048	0.868239795918367	1	1	0	tgccgctcgctgagccagccGagtcccagcccagcgggcgg	15	17	0	1	rs62187495	byfrequency	TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	.	SNPH-92	NM_014723	exon6	c.G1449A	p.P483P	CCAGCCGAGTCCC	.	8	5	1	0	G|0.987;A|0.013	1	1	0	0	0	A	1286662	G	A	1286662	2	1	11	1	0	0	0	0	0	0	0	1	14885	1045	37	1		1	SNPH	20	1286662	Silent	SNP	G	TCGA-OR-A5JC-01A-11D-A29I-10		1286662	61738858	89	2773										
PLCB4	5332	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr20	9353694	9353694	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0707070707070707	7	0.871929730042091	1.418125	2.70119047619048	0.868239795918367	1	1	0	tctaataaatttcttttcagCaatggagacaaaactgatta	5	6	3	2	novel		TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	.	PLCB4-274	NM_182797	exon10	c.C687T	p.I229I	TTTCAGCAATGGA	.	98	13	79	1	.	0	0	0	0	0	T	9353694	C	T	9353694	2	4	11	1	0	0	0	0	0	0	0	1	12059	724	25	3		3	PLCB4	20	9353694	Silent	SNP	C	TCGA-OR-A5JC-01A-11D-A29I-10	8067032	9353694	53671826	90	2774										
COL20A1	57642	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr20	61957493	61957493	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0707070707070707	7	0.871929730042091	1.418125	2.70119047619048	0.868239795918367	1	1	0	ctggcctgcctggaccccctGgccccagggtaggcaccgac	13	18	0	0	novel		TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	.	COL20A1-90	NM_020882	exon30	c.G3448A	p.G1150S	CCCCCTGGCCCCA	.	116	27	74	1	.	0	0	0	0	0	A	61957493	G	A	61957493	3	1	11	1	0	0	0	0	1	0	0	0	3685	1348	47	3		3	COL20A1	20	61957493	Missense_Mutation	SNP	G	TCGA-OR-A5JC-01A-11D-A29I-10	52603799	61957493	1068027	91	2775										
COL18A1	80781	hgsc.bcm.edu	37	chr21	46929331	46929331	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0707070707070707	7	0.871929730042091	1.418125	2.70119047619048	0.868239795918367	1	1	0	gcacgacagcaacccctaccCgcggcgggagcacccccacc	10	21	0	0	rs187670025		TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	.	COL18A1-90	NM_030582	exon39	c.C3842G	p.P1281R	CCTACCCGCGGCG	.	10	4	0	0	C|0.994;G|0.006	22	14	8	0	0	G	46929331	C	G	46929331	3	3	11	1	0	0	0	0	1	0	0	0	3681	652	23	2	4815	2	COL18A1	21	46929331	Missense_Mutation	SNP	C	TCGA-OR-A5JC-01A-11D-A29I-10		46929331	1200564	92	2776										
NEFH	4744	bcgsc.ca	37	chr22	29885861	29885861	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0707070707070707	7	0.871929730042091	1.418125	2.70119047619048	0.868239795918367	1	1	0	tccccagtgaaggaagaagcTaagtccccagagaaggccaa	11	11	0	3	rs165923	bycluster;byfrequency;by1000genomes	TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	.	NEFH-90	NM_021076	exon4	c.T2232C	p.A744A	AGAAGCTAAGTCC	.	210	8	418	2	T|0.192;C|0.808	11	11	0	0	0	C	29885861	T	C	29885861	2	2	11	1	0	0	0	0	0	0	0	1	10343	1509	53	4		4	NEFH	22	29885861	Silent	SNP	T	TCGA-OR-A5JC-01A-11D-A29I-10		29885861	21418705	93	2777										
FBXO7	25793	bcgsc.ca	37	chr22	32875190	32875190	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0707070707070707	7	0.871929730042091	1.418125	2.70119047619048	0.868239795918367	1	1	0	agctccaatcagactagcatGcaggatgaacaaccaagtga	9	10	1	3	rs11107	bycluster;byfrequency;by1000genomes	TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	.	FBXO7-228	NM_012179	exon2	c.G345A	p.M115I	TAGCATGCAGGAT	.	80	5	110	0	G|0.577;N|0.000	3	3	0	0	0	A	32875190	G	A	32875190	3	1	11	1	0	0	0	0	1	0	0	0	5779	1319	46	3	392	3	FBXO7	22	32875190	Missense_Mutation	SNP	G	TCGA-OR-A5JC-01A-11D-A29I-10	2989329	32875190	18429376	94	2778										
ASMTL	8623	broad.mit.edu;bcgsc.ca	37	chrX	1538001	1538001	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0707070707070707	7	0.871929730042091	1.418125	2.70119047619048	0.868239795918367	1	1	0	cgtctccgggctctggtagtAcgcatcctggaacacagcag	12	13	2	0	novel		TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	.	ASMTL-62	NM_004192	exon10	c.T1252C	p.Y418H	GGTAGTACGCATC	.	207	10	75	0	.	1	1	0	0	0	G	1538001	A	G	1538001	3	3	11	1	0	0	0	0	1	0	0	0	1047	391	14	4	629	4	ASMTL	23	1538001	Missense_Mutation	SNP	A	TCGA-OR-A5JC-01A-11D-A29I-10		1538001	153732559	95	2779										
PDK3	5165	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	24517001	24517001	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0707070707070707	7	0.871929730042091	1.418125	2.70119047619048	0.868239795918367	1	1	0	aaaataagagccctgaggatCcacaggtcttggataagtaa	10	7	1	2	novel		TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	.	PDK3-377	NM_005391	exon3	c.C304T	p.P102S	GAGGATCCACAGG	.	133	46	100	0	.	0	0	0	0	0	T	24517001	C	T	24517001	3	4	11	1	0	0	0	0	1	0	0	0	11706	855	30	3	314	3	PDK3	23	24517001	Missense_Mutation	SNP	C	TCGA-OR-A5JC-01A-11D-A29I-10	22979000	24517001	130753559	96	2780										
NUDT11	55190	broad.mit.edu	37	chrX	51239296	51239309	+	Frame_Shift_Del	DEL	TCCTCGAGGCAGCC	TCCTCGAGGCAGCC	-													0.0707070707070707	7	0.871929730042091	1.418125	2.70119047619048	0.868239795918367	1	1	0	ctggttgggtttgcacttcaTcctcgaggcagcctcctcga					novel		TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	.	NUDT11-130	NM_018159	wholegene			ACTTCATCCTCGA	.	149	49	16	0	.	0	0	0	0	0	-	51239309	TCCTCGAGGCAGCC	-	51239296	7	5	11	1	0	1	0	1	0	0	0	0	10756	1435	50	0	501	0	NUDT11	23	51239296	Frame_Shift_Del	DEL	TCCTCGAGGCAGCC	TCGA-OR-A5JC-01A-11D-A29I-10	26722295	51239296	104031264	97	2781										
KIAA1210	57481	broad.mit.edu	37	chrX	118219366	118219366	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0707070707070707	7	0.871929730042091	1.418125	2.70119047619048	0.868239795918367	1	1	0	ctcatatttaggctccttagTctcagcatcggctccagcat	7	13	2	0	novel		TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	.	KIAA1210-67	NM_020721	exon12	c.A4828G	p.T1610A	CCTTAGTCTCAGC	.	97	4	60	0	.	0	0	0	0	0	C	118219366	T	C	118219366	3	2	11	1	0	0	0	0	1	0	0	0	8235	1667	58	4	313	4	KIAA1210	23	118219366	Missense_Mutation	SNP	T	TCGA-OR-A5JC-01A-11D-A29I-10	66980070	118219366	37051194	98	2782										
FATE1	89885	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	150884636	150884637	+	Missense_Mutation	DNP	CC	CC	AA													0.0707070707070707	7	0.871929730042091	1.418125	2.70119047619048	0.868239795918367	1	1	0	aaggcggagatggaaatgtcCctggcagaagaactgaatca					novel		TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	CC	CC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	.	FATE1-131	NM_033085	exon1	c.C46A	p.L16M	ATGTCCCTGGCAG	.	286	30	160	0	.	0	0	0	0	0	AA	150884637	CC	AA	150884636	3	1	11	1	0	0	0	0	1	0	0	0	5712	610	22	3	47	3	FATE1	23	150884636	Missense_Mutation	DNP	CC	TCGA-OR-A5JC-01A-11D-A29I-10	32665270	150884636	4385924	99	2783										
SRM	6723	hgsc.bcm.edu	37	chr1	11119899	11119899	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0121951219512195	1	1	0.250753631131817	1.14232209737828	0	1	1	0	agcagctgctccacctgcagTgacagggcctggccgggcca	14	15	0	1	rs7545802		TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	.	SRM-90	NM_003132	exon1	c.A102G	p.S34S	CTGCAGTGACAGG	.	7	7	0	0	T|0.001;C|0.999	19	0	19	0	0	C	11119899	T	C	11119899	2	2	12	1	0	0	0	0	0	0	0	1	15188	1683	59	4		4	SRM	1	11119899	Silent	SNP	T	TCGA-OR-A5JD-01A-11D-A29I-10		11119899	238130722	1	2784										
RPS6KA1	6195	hgsc.bcm.edu	37	chr1	26856462	26856462	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0121951219512195	1	1	0.250753631131817	1.14232209737828	0	1	1	0	ccgctcatggagctagtgccTctggacccggaggtgagtga	15	11	2	2	rs11800553	byfrequency	TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	.	RPS6KA1-510	NM_002953	exon1	c.T51G	p.P17P	AGTGCCTCTGGAC	.	4	4	0	0	T|0.065;G|0.935	0	0	0	0	0	G	26856462	T	G	26856462	2	3	12	1	0	0	0	0	0	0	0	1	13685	1538	54	5		5	RPS6KA1	1	26856462	Silent	SNP	T	TCGA-OR-A5JD-01A-11D-A29I-10	15736563	26856462	222394159	2	2785										
RRAGC	64121	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	39321479	39321479	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0121951219512195	1	1	0.250753631131817	1.14232209737828	0	1	1	0	tgtgatcatcagacagaccaTcaactttgtgaataaaaacc	6	9	3	4	novel		TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	.	RRAGC-91	NM_022157	exon3	c.A542T	p.D181V	AGACCATCAACTT	.	95	6	115	0	.	7	7	0	0	0	A	39321479	T	A	39321479	3	1	12	1	0	0	0	0	1	0	0	0	13709	1435	50	5	677	5	RRAGC	1	39321479	Missense_Mutation	SNP	T	TCGA-OR-A5JD-01A-11D-A29I-10	12465017	39321479	209929142	3	2786										
ZCCHC11	23318	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	52943488	52943488	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0121951219512195	1	1	0.250753631131817	1.14232209737828	0	1	1	0	agcaaaatccagtgtgtagaAtttaagcagctctaaccata	7	8	1	1	novel		TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	.	ZCCHC11-93	NM_001009881	exon12	c.T1915C	p.F639L	TGTAGAATTTAAG	.	112	18	111	0	.	1	1	0	0	0	G	52943488	A	G	52943488	3	3	12	1	0	0	0	0	1	0	0	0	17617	101	4	4	3098	4	ZCCHC11	1	52943488	Missense_Mutation	SNP	A	TCGA-OR-A5JD-01A-11D-A29I-10	13622009	52943488	196307133	4	2787										
SSBP3	23648	broad.mit.edu	37	chr1	54871665	54871665	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0121951219512195	1	1	0.250753631131817	1.14232209737828	0	1	1	0	ccgagggcaccgccgagcctTtgcctttggcaaacatggtt	12	13	0	0	novel		TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	.	SSBP3-90	NM_001009955	exon1	c.A17G	p.K6R	GAGCCTTTGCCTT	.	68	5	81	1	.	10	10	0	0	0	C	54871665	T	C	54871665	3	2	12	1	0	0	0	0	1	0	0	0	15218	1841	64	4	1221	4	SSBP3	1	54871665	Missense_Mutation	SNP	T	TCGA-OR-A5JD-01A-11D-A29I-10	1928177	54871665	194378956	5	2788										
C1orf173	127254	broad.mit.edu	37	chr1	75036922	75036922	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0121951219512195	1	1	0.250753631131817	1.14232209737828	0	1	1	0	gaagtgttgccatcgcctgtAgactctccggactcaattcc	9	13	2	1	novel		TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	.	C1orf173-94	NM_001002912	exon14	c.T4472C	p.L1491P	GCCTGTAGACTCT	.	126	4	169	0	.	0	0	0	0	0	G	75036922	A	G	75036922	3	3	12	1	0	0	0	0	1	0	0	0	2020	420	15	4	124	4	C1orf173	1	75036922	Missense_Mutation	SNP	A	TCGA-OR-A5JD-01A-11D-A29I-10	20165257	75036922	174213699	6	2789										
NBPF14	25832	bcgsc.ca	37	chr1	148004732	148004732	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0121951219512195	1	1	0.250753631131817	1.14232209737828	0	1	1	0	ttgacggagtcgaataacatAtatccagtgagtcctgcaag	10	8	0	2	rs77570381		TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	.	NBPF14-91	NM_015383	exon22	c.T2582G	p.I861R	TAACATATATCCA	.	91	38	283	26	C|1.000;|0.000	88	0	88	0	0	C	148004732	A	C	148004732	3	2	12	1	0	0	0	0	1	0	0	0	10223	449	16	5	187	5	NBPF14	1	148004732	Missense_Mutation	SNP	A	TCGA-OR-A5JD-01A-11D-A29I-10	72967810	148004732	101245889	7	2790			1	7		2	2	18	N	C_A	4.502958e-05
NBPF14	25832	bcgsc.ca	37	chr1	148004749	148004749	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0121951219512195	1	1	0.250753631131817	1.14232209737828	0	1	1	0	catatatccagtgagtcctgCaagacttcaggctcttccac	7	13	2	2	rs77143638	byfrequency	TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	.	NBPF14-91	NM_015383	exon22	c.G2565A	p.L855L	GTCCTGCAAGACT	.	68	12	216	6	C|0.986;T|0.014	150	131	19	0	0	T	148004749	C	T	148004749	2	4	12	1	0	0	0	0	0	0	0	1	10223	709	25	3		3	NBPF14	1	148004749	Silent	SNP	C	TCGA-OR-A5JD-01A-11D-A29I-10	17	148004749	101245872	8	2791			1	7		2	2	18	N	C_A	4.502958e-05
PEA15	8682	broad.mit.edu;bcgsc.ca	37	chr1	160182974	160182974	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0121951219512195	1	1	0.250753631131817	1.14232209737828	0	1	1	0	tcactatggtggttgactacAgaacccgtgtgctgaagatc	11	9	1	4	rs61756023	byfrequency	TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	.	PEA15-658	NM_003768	exon3	c.A247C	p.R83R	GACTACAGAACCC	.	191	7	254	0	A|0.999;C|0.001	56	53	3	0	0	C	160182974	A	C	160182974	2	2	12	1	0	0	0	0	0	0	0	1	11740	180	7	5		5	PEA15	1	160182974	Silent	SNP	A	TCGA-OR-A5JD-01A-11D-A29I-10	12178225	160182974	89067647	9	2792										
SLC30A1	7779	broad.mit.edu;ucsc.edu	37	chr1	211749518	211749518	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0121951219512195	1	1	0.250753631131817	1.14232209737828	0	1	1	0	gacatgcagaaaaactccacGcatgttaagttgtccagccc	8	12	0	1	novel		TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	.	SLC30A1-93	NM_021194	exon2	c.C736T	p.R246C	CTCCACGCATGTT	.	113	3	119	0	.	17	15	2	0	0	A	211749518	G	A	211749518	3	1	12	1	0	0	0	0	1	0	0	0	14588	1087	38	1	791	1	SLC30A1	1	211749518	Missense_Mutation	SNP	G	TCGA-OR-A5JD-01A-11D-A29I-10	51566544	211749518	37501103	10	2793										
RYR2	6262	broad.mit.edu;bcgsc.ca	37	chr1	237754280	237754280	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0121951219512195	1	1	0.250753631131817	1.14232209737828	0	1	1	0	tgcccaggaaaagccctctcGtctgaaacaaaggttactaa	8	11	2	1	novel		TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	.	RYR2-158	NM_001035	exon31	c.G4148T	p.R1383L	CCTCTCGTCTGAA	.	37	4	34	0	.	0	0	0	0	0	T	237754280	G	T	237754280	3	4	12	1	0	0	0	0	1	0	0	0	13804	1145	40	2	4270	2	RYR2	1	237754280	Missense_Mutation	SNP	G	TCGA-OR-A5JD-01A-11D-A29I-10	26004762	237754280	11496341	11	2794										
DNMT3A	1788	broad.mit.edu	37	chr2	25469926	25469926	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0121951219512195	1	1	0.250753631131817	1.14232209737828	0	1	1	0	gcagggacactcacctgcagGacctcgtagatggctttgcg	13	12	1	1	novel		TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	.	DNMT3A-1924	NM_175629	exon9	c.C1116T	p.V372V	CTGCAGGACCTCG	.	106	4	162	1	.	0	0	0	0	0	A	25469926	G	A	25469926	2	1	12	1	0	0	0	0	0	0	0	1	4687	1161	41	3		3	DNMT3A	2	25469926	Silent	SNP	G	TCGA-OR-A5JD-01A-11D-A29I-10		25469926	217729447	12	2795										
DYSF	8291	bcgsc.ca	37	chr2	71780215	71780215	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0121951219512195	1	1	0.250753631131817	1.14232209737828	0	1	1	0	atgctgcaggatgtggatgaTgccatccagtttgaggtcag	14	7	1	2	rs2303596	byfrequency	TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	.	DYSF-158	NM_001130982	exon21	c.T1923C	p.D641D	GGATGATGCCATC	.	305	10	421	4	T|0.328;C|0.672	6	6	0	0	0	C	71780215	T	C	71780215	2	2	12	1	0	0	0	0	0	0	0	1	4870	1461	51	4		4	DYSF	2	71780215	Silent	SNP	T	TCGA-OR-A5JD-01A-11D-A29I-10	46310289	71780215	171419158	13	2796										
LRP2	4036	bcgsc.ca	37	chr2	170096095	170096095	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0121951219512195	1	1	0.250753631131817	1.14232209737828	0	1	1	0	tagcctgtatcacacgagcaCcggaaagaacctctcatatt	7	12	2	1	rs34915742	byfrequency	TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	.	LRP2-175	NM_004525	exon26	c.G4236C	p.R1412R	CGAGCACCGGAAA	.	201	7	248	3	C|0.714;G|0.286	0	0	0	0	0	G	170096095	C	G	170096095	2	3	12	1	0	0	0	0	0	0	0	1	8983	494	18	3		3	LRP2	2	170096095	Silent	SNP	C	TCGA-OR-A5JD-01A-11D-A29I-10	98315880	170096095	73103278	14	2797										
HOXD4	3233	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr2	177016766	177016766	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0121951219512195	1	1	0.250753631131817	1.14232209737828	0	1	1	0	cagccggccgtggtctacccCtggatgaagaaggtgcacgt	14	12	1	2	novel		TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	.	HOXD4-91	NM_014621	exon1	c.C405A	p.P135P	CTACCCCTGGATG	.	81	12	135	0	.	0	0	0	0	0	A	177016766	C	A	177016766	2	1	12	1	0	0	0	0	0	0	0	1	7345	668	24	3		3	HOXD4	2	177016766	Silent	SNP	C	TCGA-OR-A5JD-01A-11D-A29I-10	6920671	177016766	66182607	15	2798										
MARCH4	57574	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	217124357	217124357	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0121951219512195	1	1	0.250753631131817	1.14232209737828	0	1	1	0	gctggttgacagcctgccacCgtttaaagatgcggtacacc	11	12	0	2	novel		TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	.	MARCH4-69	NM_020814	exon4	c.G911A	p.R304Q	TGCCACCGTTTAA	.	87	52	87	0	.	0	0	0	0	0	T	217124357	C	T	217124357	3	4	12	1	0	0	0	0	1	0	0	0	9331	652	23	1	325	1	MARCH4	2	217124357	Missense_Mutation	SNP	C	TCGA-OR-A5JD-01A-11D-A29I-10	40107591	217124357	26075016	16	2799										
MYEOV2	150678	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr2	241066032	241066032	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0121951219512195	1	1	0.250753631131817	1.14232209737828	0	1	1	0	tcttcccttcttctccaccaGcaacggatggtgtttcatca	6	14	5	0	novel		TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	.	MYEOV2-68	NM_138336	exon5	c.C707A	p.A236D	CCACCAGCAACGG	.	156	9	195	0	.	0	0	0	0	0	T	241066032	G	T	241066032	3	4	12	1	0	0	0	0	1	0	0	0	10054	971	34	3	55	3	MYEOV2	2	241066032	Missense_Mutation	SNP	G	TCGA-OR-A5JD-01A-11D-A29I-10	23941675	241066032	2133341	17	2800										
KLHDC8B	200942	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	49211828	49211828	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0121951219512195	1	1	0.250753631131817	1.14232209737828	0	1	1	0	cctgcacgggaacaagatctAtgtcctgggtaagggcctgg	14	10	1	1	novel		TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	.	KLHDC8B-90	NM_173546	exon3	c.A533G	p.Y178C	AGATCTATGTCCT	.	102	33	92	0	.	4	1	3	0	0	G	49211828	A	G	49211828	3	3	12	1	0	0	0	0	1	0	0	0	8384	449	16	4	539	4	KLHDC8B	3	49211828	Missense_Mutation	SNP	A	TCGA-OR-A5JD-01A-11D-A29I-10		49211828	148810602	18	2801										
AMIGO3	386724	broad.mit.edu	37	chr3	49755684	49755684	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0121951219512195	1	1	0.250753631131817	1.14232209737828	0	1	1	0	cggcggcagcagcggcagggTggggcgaacaggtagagcag	21	9	0	1	novel		TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	.	AMIGO3-91	NM_198722	exon1	c.A1215C	p.P405P	GCAGGGTGGGGCG	.	92	19	55	8	.	5	3	2	0	0	G	49755684	T	G	49755684	2	3	12	1	0	0	0	0	0	0	0	1	577	1683	59	5		5	AMIGO3	3	49755684	Silent	SNP	T	TCGA-OR-A5JD-01A-11D-A29I-10	543856	49755684	148266746	19	2802										
STAB1	23166	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	52554839	52554839	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0121951219512195	1	1	0.250753631131817	1.14232209737828	0	1	1	0	gggcagccctgaggcctgctGgcgcttctacccgaagttct	13	14	2	1	novel		TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	.	STAB1-139	NM_015136	exon55	c.G5726T	p.W1909L	CCTGCTGGCGCTT	.	58	12	52	0	.	43	43	0	0	0	T	52554839	G	T	52554839	3	4	12	1	0	0	0	0	1	0	0	0	15274	1357	47	3	5944	3	STAB1	3	52554839	Missense_Mutation	SNP	G	TCGA-OR-A5JD-01A-11D-A29I-10	2799155	52554839	145467591	20	2803										
EEFSEC	60678	hgsc.bcm.edu	37	chr3	127872602	127872602	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0121951219512195	1	1	0.250753631131817	1.14232209737828	0	1	1	0	gagcccgagcccggcgagccActgcttcaggtcacgctggt	14	15	2	0	rs11719546	byfrequency	TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	.	EEFSEC-91	NM_021937	exon1	c.A252G	p.P84P	CGAGCCACTGCTT	.	5	5	2	0	A|0.881;G|0.119	2	0	2	0	0	G	127872602	A	G	127872602	2	3	12	1	0	0	0	0	0	0	0	1	4942	146	6	4		4	EEFSEC	3	127872602	Silent	SNP	A	TCGA-OR-A5JD-01A-11D-A29I-10	75317763	127872602	70149828	21	2804										
DNAJC13	23317	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	132245070	132245070	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0121951219512195	1	1	0.250753631131817	1.14232209737828	0	1	1	0	agcagatactgttggtctagCctgtgaagcaattaatcgaa	10	7	1	2	novel		TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	.	DNAJC13-272	NM_015268	exon53	c.C6326G	p.A2109G	GTCTAGCCTGTGA	.	219	85	131	0	.	45	23	22	0	0	G	132245070	C	G	132245070	3	3	12	1	0	0	0	0	1	0	0	0	4643	739	26	3	6532	3	DNAJC13	3	132245070	Missense_Mutation	SNP	C	TCGA-OR-A5JD-01A-11D-A29I-10	4372468	132245070	65777360	22	2805										
IDUA	3425	hgsc.bcm.edu	37	chr4	996888	996888	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0121951219512195	1	1	0.250753631131817	1.14232209737828	0	1	1	0	cccgacggcgagtggcggcgCctgggccggcccgtcttccc	16	18	1	0	rs115929690	byfrequency	TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	.	IDUA-91	NM_000203	exon10	c.C1467T	p.R489R	GCGGCGCCTGGGC	.	9	5	2	0	C|0.817;T|0.183	0	0	0	0	0	T	996888	C	T	996888	2	4	12	1	0	0	0	0	0	0	0	1	7525	726	26	3		3	IDUA	4	996888	Silent	SNP	C	TCGA-OR-A5JD-01A-11D-A29I-10		996888	190157388	23	2806										
EXOC1	55763	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	56737029	56737029	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0121951219512195	1	1	0.250753631131817	1.14232209737828	0	1	1	0	cacctaattcatcttagtaaCactaataatgtaaaactcct	2	10	2	0	novel		TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	.	EXOC1-950	NM_018261	exon6	c.C789T	p.N263N	TAGTAACACTAAT	.	191	86	170	0	.	9	8	1	0	0	T	56737029	C	T	56737029	2	4	12	1	0	0	0	0	0	0	0	1	5314	477	17	3		3	EXOC1	4	56737029	Silent	SNP	C	TCGA-OR-A5JD-01A-11D-A29I-10	55740141	56737029	134417247	24	2807										
STBD1	8987	broad.mit.edu	37	chr4	77231087	77231087	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0121951219512195	1	1	0.250753631131817	1.14232209737828	0	1	1	0	gttacccgctgggaagaatgCagcaatagattcctagaaac	10	9	0	3	novel		TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	.	STBD1-69	NM_003943	exon2	c.C1011T	p.C337C	AGAATGCAGCAAT	.	115	3	90	0	.	42	42	0	0	0	T	77231087	C	T	77231087	2	4	12	1	0	0	0	0	0	0	0	1	15311	718	25	3		3	STBD1	4	77231087	Silent	SNP	C	TCGA-OR-A5JD-01A-11D-A29I-10	20494058	77231087	113923189	25	2808										
FBXO8	26269	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	175158607	175158607	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0121951219512195	1	1	0.250753631131817	1.14232209737828	0	1	1	0	gtagatattgtcataaagatGccctacaaaatcttcactaa	5	8	3	2	novel		TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	.	FBXO8-290	NM_012180	exon6	c.C916T	p.H306Y	AAAGATGCCCTAC	.	83	26	101	0	.	36	18	18	0	0	A	175158607	G	A	175158607	3	1	12	1	0	0	0	0	1	0	0	0	5780	1319	46	3	47	3	FBXO8	4	175158607	Missense_Mutation	SNP	G	TCGA-OR-A5JD-01A-11D-A29I-10	97927520	175158607	15995669	26	2809										
PDZD2	23037	bcgsc.ca	37	chr5	32074509	32074509	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0121951219512195	1	1	0.250753631131817	1.14232209737828	0	1	1	0	acagacacccagagtccgacGaacactgggagccccagttc	10	15	0	2	rs2291113	byfrequency	TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	.	PDZD2-563	NM_178140	exon17	c.G3297A	p.T1099T	TCCGACGAACACT	.	125	5	98	1	G|0.922;A|0.078	0	0	0	0	0	A	32074509	G	A	32074509	2	1	12	1	0	0	0	0	0	0	0	1	11730	1045	37	1		1	PDZD2	5	32074509	Silent	SNP	G	TCGA-OR-A5JD-01A-11D-A29I-10		32074509	148840751	27	2810										
NUP155	9631	broad.mit.edu;bcgsc.ca	37	chr5	37328505	37328505	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0121951219512195	1	1	0.250753631131817	1.14232209737828	0	1	1	0	tggatttggatagggactacCactaggaacaggagaaccta	12	7	0	1	novel		TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	.	NUP155-205	NM_153485	exon17	c.G1831A	p.G611S	GACTACCACTAGG	.	627	18	503	0	.	7	6	1	0	0	T	37328505	C	T	37328505	3	4	12	1	0	0	0	0	1	0	0	0	10785	594	21	3	2420	3	NUP155	5	37328505	Missense_Mutation	SNP	C	TCGA-OR-A5JD-01A-11D-A29I-10	5253996	37328505	143586755	28	2811										
PCDHB10	56126	broad.mit.edu	37	chr5	140573548	140573548	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0121951219512195	1	1	0.250753631131817	1.14232209737828	0	1	1	0	tgcacatcggcagcgtcagcGccacagacagagactcgggc	13	14	1	2	novel		TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	.	PCDHB10-92	NM_018930	exon1	c.G1423C	p.A475P	GTCAGCGCCACAG	.	267	5	208	0	.	18	18	0	0	0	C	140573548	G	C	140573548	3	2	12	1	0	0	0	0	1	0	0	0	11564	1087	38	2	1425	2	PCDHB10	5	140573548	Missense_Mutation	SNP	G	TCGA-OR-A5JD-01A-11D-A29I-10	103245043	140573548	40341712	29	2812										
GPLD1	2822	bcgsc.ca	37	chr6	24437408	24437408	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0121951219512195	1	1	0.250753631131817	1.14232209737828	0	1	1	0	cgggagaagcggcggtctccGctgaaggtgctgagcagcag	18	10	1	3	rs61733145	byfrequency	TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	.	GPLD1-228	NM_001503	exon21	c.C2130T	p.S710S	GTCTCCGCTGAAG	.	115	5	183	2	G|0.961;A|0.039	0	0	0	0	0	A	24437408	G	A	24437408	2	1	12	1	0	0	0	0	0	0	0	1	6634	1078	38	1		1	GPLD1	6	24437408	Silent	SNP	G	TCGA-OR-A5JD-01A-11D-A29I-10		24437408	146677659	30	2813										
COL11A2	1302	ucsc.edu;bcgsc.ca	37	chr6	33138677	33138677	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0121951219512195	1	1	0.250753631131817	1.14232209737828	0	1	1	0	ccctggggtccccgagctccGggctccccatctgctccctg	11	20	1	0	rs1799911	byfrequency	TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	.	COL11A2-95	NM_080680	exon46	c.C3384T	p.P1128P	AGCTCCGGGCTCC	.	35	4	50	0	G|0.763;A|0.237	0	0	0	0	0	A	33138677	G	A	33138677	2	1	12	1	0	0	0	0	0	0	0	1	3674	1103	39	1		1	COL11A2	6	33138677	Silent	SNP	G	TCGA-OR-A5JD-01A-11D-A29I-10	8701269	33138677	137976390	31	2814										
MICAL1	64780	broad.mit.edu;bcgsc.ca	37	chr6	109767928	109767928	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0121951219512195	1	1	0.250753631131817	1.14232209737828	0	1	1	0	agggcctctatcgctgccttCcgctttgtggtctgtctggg	13	12	3	0	novel		TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	.	MICAL1-154	NM_022765	exon18	c.G2275T	p.E759X	TGCCTTCCGCTTT	.	144	6	130	0	.	1	1	0	0	0	A	109767928	C	A	109767928	4	1	12	1	0	0	0	0	0	1	0	0	9597	864	30	3	960	3	MICAL1	6	109767928	Nonsense_Mutation	SNP	C	TCGA-OR-A5JD-01A-11D-A29I-10	76629251	109767928	61347139	32	2815										
DNAH11	8701	broad.mit.edu;bcgsc.ca	37	chr7	21892238	21892238	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0121951219512195	1	1	0.250753631131817	1.14232209737828	0	1	1	0	caaagaccaccgtggcagagAtagagcacaaggtaggaagg	14	8	0	3	novel		TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	.	DNAH11-146	.	.	.	.	GCAGAGATAGAGC	.	230	7	157	0	.	0	0	0	0	0	T	21892238	A	T	21892238	3	4	12	1	0	0	0	0	1	0	0	0	4610	333	12	5	11338	5	DNAH11	7	21892238	Missense_Mutation	SNP	A	TCGA-OR-A5JD-01A-11D-A29I-10		21892238	137246425	33	2816										
GHRHR	2692	broad.mit.edu;bcgsc.ca	37	chr7	31016898	31016898	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0121951219512195	1	1	0.250753631131817	1.14232209737828	0	1	1	0	tcttctttggacccacagggCttcattgttgccatcctcta	7	13	4	0	novel		TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	.	GHRHR-586	NM_000823	exon12	c.C1107A	p.G369G	ACAGGGCTTCATT	.	208	7	180	0	.	0	0	0	0	0	A	31016898	C	A	31016898	2	1	12	1	0	0	0	0	0	0	0	1	6393	784	28	3		3	GHRHR	7	31016898	Silent	SNP	C	TCGA-OR-A5JD-01A-11D-A29I-10	9124660	31016898	128121765	34	2817										
ZNF394	84124	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	99092230	99092230	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0121951219512195	1	1	0.250753631131817	1.14232209737828	0	1	1	0	gttgcattggaatcaactctTtgttctccactctgctttcc	6	12	4	0	novel		TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	.	ZNF394-90	NM_032164	exon3	c.A608G	p.K203R	AACTCTTTGTTCT	.	46	24	21	0	.	6	1	5	0	0	C	99092230	T	C	99092230	3	2	12	1	0	0	0	0	1	0	0	0	17917	1841	64	4	1081	4	ZNF394	7	99092230	Missense_Mutation	SNP	T	TCGA-OR-A5JD-01A-11D-A29I-10	68075332	99092230	60046433	35	2818										
SLC25A37	51312	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	23429210	23429211	+	Missense_Mutation	DNP	CG	CG	TT													0.0121951219512195	1	1	0.250753631131817	1.14232209737828	0	1	1	0	cgggtatggccaatgccttcCggacggtgtaccagctcaac					novel		TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10	CG	CG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	.	SLC25A37-90	NM_016612	exon4	c.G860T	p.R287L	CCTTCCGGACGGT	.	116	12	80	0	.	0	0	0	0	0	TT	23429211	CG	TT	23429210	3	4	12	1	0	0	0	0	1	0	0	0	14536	643	23	1	873	1	SLC25A37	8	23429210	Missense_Mutation	DNP	CG	TCGA-OR-A5JD-01A-11D-A29I-10		23429210	122934812	36	2819										
CHMP4C	92421	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr8	82667643	82667644	+	Frame_Shift_Ins	INS	-	-	A													0.0121951219512195	1	1	0.250753631131817	1.14232209737828	0	1	1	0	gatttgatgcaagagatcacINSagagcaacaggatatcgccc					novel		TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	.	CHMP4C-92	NM_152284	exon3	c.407_408insA	p.T136fs	AGATCACAGAGCA	.	176	63	138	0	.	0	0	0	0	0	A	82667644	-	A	82667643	7	5	12	1	0	1	1	0	0	0	0	0	3364	478	17	0	417	0	CHMP4C	8	82667643	Frame_Shift_Ins	INS	-	TCGA-OR-A5JD-01A-11D-A29I-10	59238433	82667643	63696379	37	2820										
FAM22F	54754	broad.mit.edu	37	chr9	97080951	97080951	+	Frame_Shift_Del	DEL	T	T	-													0.0121951219512195	1	1	0.250753631131817	1.14232209737828	0	1	1	0	gacttgctggcaggagaaggTgatgggctgaggcctctttt					novel		TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	.	FAM22F-68	NM_017561	exon7	c.2067delA	p.S689fs	AGAAGGTGATGGG	.	284	7	208	1	.	0	0	0	0	0	-	97080951	T	-	97080951	7	5	12	1	0	1	0	1	0	0	0	0	5561	1683	59	0	207	0	FAM22F	9	97080951	Frame_Shift_Del	DEL	T	TCGA-OR-A5JD-01A-11D-A29I-10		97080951	44132480	38	2821										
WDR34	89891	hgsc.bcm.edu	37	chr9	131418828	131418828	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0121951219512195	1	1	0.250753631131817	1.14232209737828	0	1	1	0	ccgcgccctcaccgtctcccAgcggatgccctggacggccc	11	21	2	0	rs4837292		TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	.	WDR34-92	NM_052844	exon1	c.T178G	p.W60G	TCTCCCAGCGGAT	.	4	4	0	0	A|0.006;C|0.994	0	0	0	0	0	C	131418828	A	C	131418828	3	2	12	1	0	0	0	0	1	0	0	0	17326	188	7	5	1468	5	WDR34	9	131418828	Missense_Mutation	SNP	A	TCGA-OR-A5JD-01A-11D-A29I-10	34337877	131418828	9794603	39	2822										
STOX1	219736	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr10	70644430	70644430	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0121951219512195	1	1	0.250753631131817	1.14232209737828	0	1	1	0	gtctgcggagcaccacatttGtgagagcaccaaacctttac	9	12	1	1	novel		TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	.	STOX1-92	NM_152709	exon3	c.G878A	p.C293Y	ACATTTGTGAGAG	.	138	63	113	0	.	0	0	0	0	0	A	70644430	G	A	70644430	3	1	12	1	0	0	0	0	1	0	0	0	15356	1377	48	3	888	3	STOX1	10	70644430	Missense_Mutation	SNP	G	TCGA-OR-A5JD-01A-11D-A29I-10		70644430	64890317	40	2823										
OR52K2	119774	broad.mit.edu	37	chr11	4470956	4470956	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0121951219512195	1	1	0.250753631131817	1.14232209737828	0	1	1	0	gaccgctatgtggctatctgCaagccactgcactacaccaa	8	14	1	0	novel		TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	.	OR52K2-70	NM_001005172	exon1	c.C387A	p.C129X	TATCTGCAAGCCA	.	142	4	163	0	.	0	0	0	0	0	A	4470956	C	A	4470956	4	1	12	1	0	0	0	0	0	1	0	0	11153	718	25	3	389	3	OR52K2	11	4470956	Nonsense_Mutation	SNP	C	TCGA-OR-A5JD-01A-11D-A29I-10		4470956	130535560	41	2824										
OR10W1	81341	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr11	58034971	58034971	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0121951219512195	1	1	0.250753631131817	1.14232209737828	0	1	1	0	atgaggagagggtactgcaaCgggtggcaaatggccacata	15	7	0	2	rs200368241		TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	.	OR10W1-69	NM_207374	exon1	c.G360A	p.P120P	CTGCAACGGGTGG	.	95	8	100	0	C|0.999;T|0.001	0	0	0	0	0	T	58034971	C	T	58034971	2	4	12	1	0	0	0	0	0	0	0	1	10950	523	19	1		1	OR10W1	11	58034971	Silent	SNP	C	TCGA-OR-A5JD-01A-11D-A29I-10	53564015	58034971	76971545	42	2825										
TMEM132A	54972	hgsc.bcm.edu	37	chr11	60701987	60701987	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0121951219512195	1	1	0.250753631131817	1.14232209737828	0	1	1	0	gaacccgctgcagaggcgtcGgatgaggccgagcggcgcgc	18	13	0	2	rs7715	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	.	TMEM132A-227	NM_017870	exon9	c.G1590A	p.S530S	GGCGTCGGATGAG	.	4	4	0	0	G|0.581;A|0.419	29	0	29	0	0	A	60701987	G	A	60701987	2	1	12	1	0	0	0	0	0	0	0	1	16082	1103	39	1		1	TMEM132A	11	60701987	Silent	SNP	G	TCGA-OR-A5JD-01A-11D-A29I-10	2667016	60701987	74304529	43	2826										
B4GALNT3	283358	bcgsc.ca	37	chr12	657404	657404	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0121951219512195	1	1	0.250753631131817	1.14232209737828	0	1	1	0	tctcctcttccagtggcgacGgaacgaccctggagccaagt	11	14	2	0	rs11063529	byfrequency	TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	.	B4GALNT3-92	NM_173593	exon9	c.G794A	p.R265Q	GGCGACGGAACGA	.	227	8	189	0	G|0.799;A|0.201	0	0	0	0	0	A	657404	G	A	657404	3	1	12	1	0	0	0	0	1	0	0	0	1269	1116	39	1	828	1	B4GALNT3	12	657404	Missense_Mutation	SNP	G	TCGA-OR-A5JD-01A-11D-A29I-10		657404	133194491	44	2827										
CLEC4C	170482	bcgsc.ca	37	chr12	7894056	7894056	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0121951219512195	1	1	0.250753631131817	1.14232209737828	0	1	1	0	catgacgcaggtcaggcttgGatgatactgttgatactctc	11	9	2	3	rs73056605	byfrequency	TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	.	CLEC4C-93	NM_130441	exon4	c.C196T	p.P66S	GGCTTGGATGATA	.	196	7	130	1	G|0.766;A|0.234	0	0	0	0	0	A	7894056	G	A	7894056	3	1	12	1	0	0	0	0	1	0	0	0	3519	1174	41	3	461	3	CLEC4C	12	7894056	Missense_Mutation	SNP	G	TCGA-OR-A5JD-01A-11D-A29I-10	7236652	7894056	125957839	45	2828										
TBX5	6910	broad.mit.edu	37	chr12	114793360	114793360	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0121951219512195	1	1	0.250753631131817	1.14232209737828	0	1	1	0	gctattgtcgctccactctgGcaccatgccaactccgtgca	8	16	1	0	novel		TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	.	TBX5-98	NM_000192	exon9	c.C1534A	p.P512T	ACTCTGGCACCAT	.	122	4	123	0	.	0	0	0	0	0	T	114793360	G	T	114793360	3	4	12	1	0	0	0	0	1	0	0	0	15698	1203	42	3	26	3	TBX5	12	114793360	Missense_Mutation	SNP	G	TCGA-OR-A5JD-01A-11D-A29I-10	106899304	114793360	19058535	46	2829										
EFHA1	221154	hgsc.bcm.edu	37	chr13	22178258	22178258	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0121951219512195	1	1	0.250753631131817	1.14232209737828	0	1	1	0	tttccgccccaggccgccacCcgcgcgcagctacccgcagc	10	22	0	0	rs9509812	byfrequency	TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	.	EFHA1-90	NM_152726	exon1	c.G30A	p.R10R	CGCCACCCGCGCG	.	9	9	0	0	C|0.873;T|0.127	6	0	6	0	0	T	22178258	C	T	22178258	2	4	12	1	0	0	0	0	0	0	0	1	4954	610	22	3		3	EFHA1	13	22178258	Silent	SNP	C	TCGA-OR-A5JD-01A-11D-A29I-10		22178258	92991620	47	2830										
SACS	26278	hgsc.bcm.edu;bcgsc.ca	37	chr13	23906646	23906646	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0121951219512195	1	1	0.250753631131817	1.14232209737828	0	1	1	0	caaaagcaacccctcgcaacTgaaaacgaaattcccttttt	4	13	0	1	novel		TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	.	SACS-298	NM_014363	exon10	c.A11369T	p.Q3790L	CGCAACTGAAAAC	.	70	4	111	0	.	1	1	0	0	0	A	23906646	T	A	23906646	3	1	12	1	0	0	0	0	1	0	0	0	13839	1580	55	5	2374	5	SACS	13	23906646	Missense_Mutation	SNP	T	TCGA-OR-A5JD-01A-11D-A29I-10	1728388	23906646	91263232	48	2831										
PABPC3	5042	bcgsc.ca	37	chr13	25671027	25671027	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0121951219512195	1	1	0.250753631131817	1.14232209737828	0	1	1	0	ccgatgaaagtggaaaatccAaaggatttggatttgtaagc	11	5	0	1	rs78826513	byfrequency	TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	.	PABPC3-72	NM_030979	exon1	c.A691G	p.K231E	AAATCCAAAGGAT	.	77	6	102	1	A|0.500;G|0.500	158	158	0	0	0	G	25671027	A	G	25671027	3	3	12	1	0	0	0	0	1	0	0	0	11394	131	5	4	693	4	PABPC3	13	25671027	Missense_Mutation	SNP	A	TCGA-OR-A5JD-01A-11D-A29I-10	1764381	25671027	89498851	49	2832										
FRY	10129	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr13	32810275	32810275	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0121951219512195	1	1	0.250753631131817	1.14232209737828	0	1	1	0	tggataacttgtctgactgcTtgaagaacagtgacctccta	9	9	1	4	novel		TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	.	FRY-142	NM_023037	exon43	c.T5776C	p.L1926L	GACTGCTTGAAGA	.	98	7	116	0	.	5	5	0	0	0	C	32810275	T	C	32810275	2	2	12	1	0	0	0	0	0	0	0	1	6082	1606	56	4		4	FRY	13	32810275	Silent	SNP	T	TCGA-OR-A5JD-01A-11D-A29I-10	7139248	32810275	82359603	50	2833										
UGGT2	55757	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr13	96579505	96579505	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0121951219512195	1	1	0.250753631131817	1.14232209737828	0	1	1	0	tgaggtactgctggttagtaCgcaaaatcaaagtatttata	9	5	1	1	novel		TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	.	UGGT2-92	NM_020121	exon18	c.G2063T	p.R688L	TTAGTACGCAAAA	.	137	6	225	0	.	0	0	0	0	0	A	96579505	C	A	96579505	3	1	12	1	0	0	0	0	1	0	0	0	16980	536	19	2	2575	2	UGGT2	13	96579505	Missense_Mutation	SNP	C	TCGA-OR-A5JD-01A-11D-A29I-10	63769230	96579505	18590373	51	2834										
NDUFB1	4707	bcgsc.ca	37	chr14	92588002	92588002	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0121951219512195	1	1	0.250753631131817	1.14232209737828	0	1	1	0	ccacctgcagcctcagcgccTacagcgaccccgagaccaag	9	19	1	1	rs3818263	byfrequency	TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	.	NDUFB1-90	NM_004545	exon1	c.A120C	p.V40V	AGCGCCTACAGCG	.	115	6	163	0	T|0.520;G|0.480	443	443	0	0	0	G	92588002	T	G	92588002	2	3	12	1	0	0	0	0	0	0	0	1	10307	1509	53	5		5	NDUFB1	14	92588002	Silent	SNP	T	TCGA-OR-A5JD-01A-11D-A29I-10		92588002	14761538	52	2835										
ARNT2	9915	bcgsc.ca	37	chr15	80884025	80884025	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0121951219512195	1	1	0.250753631131817	1.14232209737828	0	1	1	0	agcactcccaccagcagcccGgtcagactgaagtgttccag	10	15	1	2	rs4072568	byfrequency	TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	.	ARNT2-175	NM_014862	exon18	c.G2035A	p.G679S	CAGCCCGGTCAGA	.	152	6	221	1	G|0.856;A|0.144	2	2	0	0	0	A	80884025	G	A	80884025	3	1	12	1	0	0	0	0	1	0	0	0	967	1116	39	1	2105	1	ARNT2	15	80884025	Missense_Mutation	SNP	G	TCGA-OR-A5JD-01A-11D-A29I-10		80884025	21647367	53	2836										
SRRM2	23524	broad.mit.edu	37	chr16	2820442	2820442	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0121951219512195	1	1	0.250753631131817	1.14232209737828	0	1	1	0	gcgtcgccgtccctcgccccAgccctcaccacgggaccagc	10	22	1	0	novel		TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	.	SRRM2-93	NM_016333	exon13	c.A8111G	p.Q2704R	CGCCCCAGCCCTC	.	104	3	103	0	.	327	327	0	0	0	G	2820442	A	G	2820442	3	3	12	1	0	0	0	0	1	0	0	0	15206	188	7	4	8157	4	SRRM2	16	2820442	Missense_Mutation	SNP	A	TCGA-OR-A5JD-01A-11D-A29I-10		2820442	87534311	54	2837										
ARMC5	79798	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr16	31477224	31477224	+	Frame_Shift_Del	DEL	G	G	-													0.0121951219512195	1	1	0.250753631131817	1.14232209737828	0	1	1	0	ctgagtcgccctttggggttGgggccctgacgcacctgctg					novel		TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	.	ARMC5-24	NM_001105247	exon5	c.1918delG	p.G640fs	GGGGTTGGGGCCC	.	55	24	49	0	.	0	0	0	0	0	-	31477224	G	-	31477224	7	5	12	1	0	1	0	1	0	0	0	0	955	1348	47	0	2250	0	ARMC5	16	31477224	Frame_Shift_Del	DEL	G	TCGA-OR-A5JD-01A-11D-A29I-10	28656782	31477224	58877529	55	2838										
KIFC3	3801	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr16	57793684	57793684	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0121951219512195	1	1	0.250753631131817	1.14232209737828	0	1	1	0	tggatccagggcggctactgGtcccagagctgggggctgag	18	10	0	2	novel		TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	.	KIFC3-91	NM_001130100	exon18	c.C2432T	p.T811I	CTACTGGTCCCAG	.	130	7	105	0	.	20	20	0	0	0	A	57793684	G	A	57793684	3	1	12	1	0	0	0	0	1	0	0	0	8335	1261	44	3	86	3	KIFC3	16	57793684	Missense_Mutation	SNP	G	TCGA-OR-A5JD-01A-11D-A29I-10	26316460	57793684	32561069	56	2839										
CSNK2A2	1459	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	58200519	58200519	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0121951219512195	1	1	0.250753631131817	1.14232209737828	0	1	1	0	atcgttgaagtgtggatctaGgtctatgtgatacttcttca	10	6	4	2	novel		TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	.	CSNK2A2-790	NM_001896	exon9	c.C796T	p.L266L	GATCTAGGTCTAT	.	130	58	121	1	.	23	16	7	0	0	A	58200519	G	A	58200519	2	1	12	1	0	0	0	0	0	0	0	1	3964	991	35	3		3	CSNK2A2	16	58200519	Silent	SNP	G	TCGA-OR-A5JD-01A-11D-A29I-10	406835	58200519	32154234	57	2840										
KCNG4	93107	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr16	84271024	84271024	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0121951219512195	1	1	0.250753631131817	1.14232209737828	0	1	1	0	ggctggacaggagctgactcCaagggctgtgggaaccatag	16	9	0	1	novel		TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	.	KCNG4-93	NM_172347	exon2	c.G68C	p.W23S	TGACTCCAAGGGC	.	86	26	70	0	.	0	0	0	0	0	G	84271024	C	G	84271024	3	3	12	1	0	0	0	0	1	0	0	0	8051	595	21	3	1497	3	KCNG4	16	84271024	Missense_Mutation	SNP	C	TCGA-OR-A5JD-01A-11D-A29I-10	26070505	84271024	6083729	58	2841										
C17orf97	400566	hgsc.bcm.edu	37	chr17	263682	263682	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0121951219512195	1	1	0.250753631131817	1.14232209737828	0	1	1	0	agggcttccaccccgaccccGaggccctcaagggcttccac	10	19	1	0	rs181299622		TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	.	C17orf97-91	NM_001013672	exon2	c.G1048A	p.E350K	GACCCCGAGGCCC	.	113	6	84	0	G|0.978;A|0.022	70	52	18	0	0	A	263682	G	A	263682	3	1	12	1	0	0	0	0	1	0	0	0	1898	1059	37	1		1	C17orf97	17	263682	Missense_Mutation	SNP	G	TCGA-OR-A5JD-01A-11D-A29I-10		263682	80931528	59	2842										
GLTPD2	388323	hgsc.bcm.edu	37	chr17	4693342	4693342	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0121951219512195	1	1	0.250753631131817	1.14232209737828	0	1	1	0	ggcgcgctgggaggcccggaCgcgggcgtgcagtgcagcga	21	12	0	0	rs35910358		TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	.	GLTPD2-68	NM_001014985	exon4	c.C627A	p.D209E	CCCGGACGCGGGC	.	5	5	0	0	C|0.015;A|0.985	0	0	0	0	0	A	4693342	C	A	4693342	3	1	12	1	0	0	0	0	1	0	0	0	6493	535	19	2	641	2	GLTPD2	17	4693342	Missense_Mutation	SNP	C	TCGA-OR-A5JD-01A-11D-A29I-10	4429660	4693342	76501868	60	2843										
POLR2A	5430	bcgsc.ca	37	chr17	7399866	7399866	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0121951219512195	1	1	0.250753631131817	1.14232209737828	0	1	1	0	aaaaacatatgcgagggtggGgaggagatggacaacaagtt	15	4	0	1	rs2301609	byfrequency	TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	.	POLR2A-91	NM_000937	exon4	c.G471A	p.G157G	GGGTGGGGAGGAG	.	203	7	199	2	G|0.810;A|0.190	2	2	0	0	0	A	7399866	G	A	7399866	2	1	12	1	0	0	0	0	0	0	0	1	12243	1219	43	3		3	POLR2A	17	7399866	Silent	SNP	G	TCGA-OR-A5JD-01A-11D-A29I-10	2706524	7399866	73795344	61	2844										
BTBD17	388419	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	72356326	72356326	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0121951219512195	1	1	0.250753631131817	1.14232209737828	0	1	1	0	tcctgcaagcgctggagcacCgcctgggagtggttgatgga	16	10	0	1	novel		TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	.	BTBD17-22	NM_001080466	exon2	c.G144A	p.A48A	GAGCACCGCCTGG	.	228	96	163	1	.	0	0	0	0	0	T	72356326	C	T	72356326	2	4	12	1	0	0	0	0	0	0	0	1	1545	639	23	1		1	BTBD17	17	72356326	Silent	SNP	C	TCGA-OR-A5JD-01A-11D-A29I-10	64956460	72356326	8838884	62	2845										
LLGL2	3993	broad.mit.edu	37	chr17	73565071	73565071	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0121951219512195	1	1	0.250753631131817	1.14232209737828	0	1	1	0	gcccacaggcacgaggacggCacggtgcggttctgggatgc	17	12	1	0	novel		TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	.	LLGL2-251	NM_004524	exon13	c.C1335A	p.G445G	GGACGGCACGGTG	.	81	11	70	2	.	0	0	0	0	0	A	73565071	C	A	73565071	2	1	12	1	0	0	0	0	0	0	0	1	8858	697	25	3		3	LLGL2	17	73565071	Silent	SNP	C	TCGA-OR-A5JD-01A-11D-A29I-10	1208745	73565071	7630139	63	2846										
DNAH17	8632	broad.mit.edu	37	chr17	76433833	76433833	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0121951219512195	1	1	0.250753631131817	1.14232209737828	0	1	1	0	ctgggggatgatgtgggtctCggggctgggggcaggctccg	22	8	1	1	novel		TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	.	DNAH17-142	NM_173628	exon74	c.G11923A	p.E3975K	GGGTCTCGGGGCT	.	102	4	95	1	.	0	0	0	0	0	T	76433833	C	T	76433833	3	4	12	1	0	0	0	0	1	0	0	0	4612	893	31	1	1497	1	DNAH17	17	76433833	Missense_Mutation	SNP	C	TCGA-OR-A5JD-01A-11D-A29I-10	2868762	76433833	4761377	64	2847										
WDR7	23335	broad.mit.edu	37	chr18	54424373	54424373	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0121951219512195	1	1	0.250753631131817	1.14232209737828	0	1	1	0	tatgtcactgatgctgccggGttataatcagcctgcttgta	10	9	2	1	rs200902295		TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	.	WDR7-93	NM_052834	exon15	c.G2549C	p.G850A	TGCCGGGTTATAA	.	173	4	228	2	G|0.999;C|0.001	0	0	0	0	0	C	54424373	G	C	54424373	3	2	12	1	0	0	0	0	1	0	0	0	17358	1261	44	3	2603	3	WDR7	18	54424373	Missense_Mutation	SNP	G	TCGA-OR-A5JD-01A-11D-A29I-10		54424373	23652875	65	2848										
TCF3	6929	hgsc.bcm.edu	37	chr19	1619339	1619339	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0121951219512195	1	1	0.250753631131817	1.14232209737828	0	1	1	0	cctgcgtgccgcccgcccagTgacatggggccggtgaaacc	14	16	0	2	rs8140	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	.	TCF3-721	NM_003200	exon15	c.A1302G	p.S434S	GCCCAGTGACATG	.	7	4	0	0	T|0.403;C|0.597	7	7	0	0	0	C	1619339	T	C	1619339	2	2	12	1	0	0	0	0	0	0	0	1	15731	1683	59	4		4	TCF3	19	1619339	Silent	SNP	T	TCGA-OR-A5JD-01A-11D-A29I-10		1619339	57509644	66	2849										
DOHH	83475	hgsc.bcm.edu	37	chr19	3492318	3492318	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0121951219512195	1	1	0.250753631131817	1.14232209737828	0	1	1	0	ttgcgcagggcgaacatggcGcggtatcgctcgaagagcgg	17	10	0	1	rs78287632	byfrequency	TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	.	DOHH-90	NM_001145165	exon4	c.C531G	p.R177R	CATGGCGCGGTAT	.	26	11	2	0	G|0.979;C|0.021	12	6	6	0	0	C	3492318	G	C	3492318	2	2	12	1	0	0	0	0	0	0	0	1	4706	1074	38	2		2	DOHH	19	3492318	Silent	SNP	G	TCGA-OR-A5JD-01A-11D-A29I-10	1872979	3492318	55636665	67	2850										
FUT3	2525	broad.mit.edu;bcgsc.ca	37	chr19	5844265	5844265	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0121951219512195	1	1	0.250753631131817	1.14232209737828	0	1	1	0	cggcttccagttggacaccgCccaggccaccagctcggtct	11	17	1	0	novel		TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	.	FUT3-90	NM_001097640	exon3	c.G586A	p.A196T	ACACCGCCCAGGC	.	217	66	204	1	.	0	0	0	0	0	T	5844265	C	T	5844265	3	4	12	1	0	0	0	0	1	0	0	0	6124	739	26	3	503	3	FUT3	19	5844265	Missense_Mutation	SNP	C	TCGA-OR-A5JD-01A-11D-A29I-10	2351947	5844265	53284718	68	2851										
PGLS	25796	hgsc.bcm.edu	37	chr19	17622614	17622614	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0121951219512195	1	1	0.250753631131817	1.14232209737828	0	1	1	0	gcgcccgtttcgcgctcggcCtgtcgggcgggagcctcgtc	16	16	0	0	rs11086075	byfrequency	TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	.	PGLS-90	NM_012088	exon1	c.C133T	p.L45L	CTCGGCCTGTCGG	.	6	5	2	0	C|0.617;T|0.383	13	9	4	0	0	T	17622614	C	T	17622614	2	4	12	1	0	0	0	0	0	0	0	1	11821	680	24	3		3	PGLS	19	17622614	Silent	SNP	C	TCGA-OR-A5JD-01A-11D-A29I-10	11778349	17622614	41506369	69	2852										
HAPLN4	404037	hgsc.bcm.edu	37	chr19	19373528	19373553	+	Frame_Shift_Del	DEL	GCCCCACTTACCATCTTGCCCGCGCG	GCCCCACTTACCATCTTGCCCGCGCG	-													0.0121951219512195	1	1	0.250753631131817	1.14232209737828	0	1	1	0	acacaccacccgcgcccgcaGccccacttaccatcttgccc					novel		TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10	GCCCCACTTACCATCTTGCCCGCGCG	GCCCCACTTACCATCTTGCCCGCGCG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	.	HAPLN4-91	NM_023002	wholegene			CCCGCAGCCCCAC	.	70	19	37	0	.	0	0	0	0	0	-	19373553	GCCCCACTTACCATCTTGCCCGCGCG	-	19373528	7	5	12	1	0	1	0	1	0	0	0	0	6978	986	34	0		0	HAPLN4	19	19373528	Frame_Shift_Del	DEL	GCCCCACTTACCATCTTGCCCGCGCG	TCGA-OR-A5JD-01A-11D-A29I-10	1750914	19373528	39755455	70	2853										
FBXO17	115290	hgsc.bcm.edu	37	chr19	39440918	39440918	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0121951219512195	1	1	0.250753631131817	1.14232209737828	0	1	1	0	agcgcgtccagggccagggaTgggtccgccggcagccgtcg	18	14	0	0	rs2304117	byfrequency	TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	.	FBXO17-226	NM_148169	exon2	c.A69G	p.P23P	CAGGGATGGGTCC	.	7	7	0	0	T|0.545;C|0.455	2	0	2	0	0	C	39440918	T	C	39440918	2	2	12	1	0	0	0	0	0	0	0	1	5749	1451	51	4		4	FBXO17	19	39440918	Silent	SNP	T	TCGA-OR-A5JD-01A-11D-A29I-10	20067390	39440918	19688065	71	2854										
ZNF229	7772	broad.mit.edu;bcgsc.ca	37	chr19	44933163	44933163	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0121951219512195	1	1	0.250753631131817	1.14232209737828	0	1	1	0	acacgtcacacacgtagggcCtctctcccgtgtggaccctc	9	17	2	0	novel		TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	.	ZNF229-94	NM_014518	exon6	c.G1793C	p.R598T	TAGGGCCTCTCTC	.	155	7	111	1	.	10	10	0	0	0	G	44933163	C	G	44933163	3	3	12	1	0	0	0	0	1	0	0	0	17819	681	24	3	688	3	ZNF229	19	44933163	Missense_Mutation	SNP	C	TCGA-OR-A5JD-01A-11D-A29I-10	5492245	44933163	14195820	72	2855										
LMTK3	114783	broad.mit.edu	37	chr19	49004261	49004261	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0121951219512195	1	1	0.250753631131817	1.14232209737828	0	1	1	0	gctagccctcaccagtagtcCgcgtaaggcagcttgagcct	11	14	1	1	novel		TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	.	LMTK3-1357	NM_001080434	exon11	c.G1230A	p.A410A	GTAGTCCGCGTAA	.	199	4	177	0	.	0	0	0	0	0	T	49004261	C	T	49004261	2	4	12	1	0	0	0	0	0	0	0	1	8884	639	23	1		1	LMTK3	19	49004261	Silent	SNP	C	TCGA-OR-A5JD-01A-11D-A29I-10	4071098	49004261	10124722	73	2856										
NR1H2	7376	hgsc.bcm.edu	37	chr19	50881825	50881825	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0121951219512195	1	1	0.250753631131817	1.14232209737828	0	1	1	0	aagaagaagattcggaaacaGcagcaggagtcacagtcaca	11	8	2	3	rs55817866	byfrequency	TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	.	NR1H2-186	NM_007121	exon6	c.G519A	p.Q173Q	GAAACAGCAGCAG	.	101	6	100	0	G|0.903;A|0.097	0	0	0	0	0	A	50881825	G	A	50881825	2	1	12	1	0	0	0	0	0	0	0	1	10646	962	34	3		3	NR1H2	19	50881825	Silent	SNP	G	TCGA-OR-A5JD-01A-11D-A29I-10	1877564	50881825	8247158	74	2857										
WISP2	8839	hgsc.bcm.edu	37	chr20	43348735	43348735	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0121951219512195	1	1	0.250753631131817	1.14232209737828	0	1	1	0	cccggggcaggacccggtggCcggggggccctgtgcctctg	19	15	1	0	rs2296530	byfrequency	TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	.	WISP2-130	NM_003881	exon2	c.C258A	p.G86G	CGGTGGCCGGGGG	.	12	9	0	0	C|0.615;A|0.385	101	54	47	0	0	A	43348735	C	A	43348735	2	1	12	1	0	0	0	0	0	0	0	1	17411	726	26	3		3	WISP2	20	43348735	Silent	SNP	C	TCGA-OR-A5JD-01A-11D-A29I-10		43348735	19676785	75	2858										
ATF4	468	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr22	39918189	39918189	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0121951219512195	1	1	0.250753631131817	1.14232209737828	0	1	1	0	gtgcataaaggaggaagacaCcccttcagataatgatagtg	11	7	1	3	novel		TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	.	ATF4-90	NM_001675	exon2	c.C638T	p.T213I	AAGACACCCCTTC	.	308	216	419	1	.	312	27	285	0	0	T	39918189	C	T	39918189	3	4	12	1	0	0	0	0	1	0	0	0	1083	507	18	3	644	3	ATF4	22	39918189	Missense_Mutation	SNP	C	TCGA-OR-A5JD-01A-11D-A29I-10		39918189	11386377	76	2859										
MXRA5	25878	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	3229333	3229333	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0121951219512195	1	1	0.250753631131817	1.14232209737828	0	1	1	0	agtagagtgtcccattgttgAagacgacatagcgcttggtg	13	7	0	3	novel		TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	.	MXRA5-136	NM_015419	exon7	c.T6911A	p.F2304Y	TTGTTGAAGACGA	.	152	52	118	1	.	0	0	0	0	0	T	3229333	A	T	3229333	3	4	12	1	0	0	0	0	1	0	0	0	10031	246	9	5	1579	5	MXRA5	23	3229333	Missense_Mutation	SNP	A	TCGA-OR-A5JD-01A-11D-A29I-10		3229333	152041227	77	2860										
ASB12	142689	broad.mit.edu	37	chrX	63444868	63444868	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0121951219512195	1	1	0.250753631131817	1.14232209737828	0	1	1	0	tcaaggagggtgcggggtctTgggacacgagccaataggcc	17	9	2	0	novel		TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	.	ASB12-228	NM_130388	exon2	c.A663C	p.P221P	GGGTCTTGGGACA	.	245	16	177	6	.	4	4	0	0	0	G	63444868	T	G	63444868	2	3	12	1	0	0	0	0	0	0	0	1	1017	1799	63	5		5	ASB12	23	63444868	Silent	SNP	T	TCGA-OR-A5JD-01A-11D-A29I-10	60215535	63444868	91825692	78	2861										
ARMCX1	51309	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	100808269	100808269	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0121951219512195	1	1	0.250753631131817	1.14232209737828	0	1	1	0	caacacgctgaaggaacaggCaagtgcaaaggcaggcaaag	13	9	0	1	novel		TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	.	ARMCX1-134	NM_016608	exon4	c.C356T	p.A119V	AACAGGCAAGTGC	.	140	44	113	1	.	36	36	0	0	0	T	100808269	C	T	100808269	3	4	12	1	0	0	0	0	1	0	0	0	960	710	25	3	358	3	ARMCX1	23	100808269	Missense_Mutation	SNP	C	TCGA-OR-A5JD-01A-11D-A29I-10	37363401	100808269	54462291	79	2862										
ATP11C	286410	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	138901556	138901556	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0121951219512195	1	1	0.250753631131817	1.14232209737828	0	1	1	0	tcttctaaactgttcaaacaGattctttgggagaaaattcc	6	8	4	2	novel		TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	.	ATP11C-198	NM_001010986	exon3	c.C187G	p.L63V	CAAACAGATTCTT	.	93	25	104	1	.	4	4	0	0	0	C	138901556	G	C	138901556	3	2	12	1	0	0	0	0	1	0	0	0	1122	933	33	3	3386	3	ATP11C	23	138901556	Missense_Mutation	SNP	G	TCGA-OR-A5JD-01A-11D-A29I-10	38093287	138901556	16369004	80	2863										
PLXNB3	5365	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	153035385	153035385	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0121951219512195	1	1	0.250753631131817	1.14232209737828	0	1	1	0	ggccaccacccccgccaggaGcagggccaggtaagccgccc	13	19	0	0	novel		TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	.	PLXNB3-130	NM_001163257	exon8	c.G1689C	p.E563D	CCAGGAGCAGGGC	.	181	68	203	2	.	0	0	0	0	0	C	153035385	G	C	153035385	3	2	12	1	0	0	0	0	1	0	0	0	12154	962	34	3	1760	3	PLXNB3	23	153035385	Missense_Mutation	SNP	G	TCGA-OR-A5JD-01A-11D-A29I-10	14133829	153035385	2235175	81	2864										
HCFC1	3054	bcgsc.ca	37	chrX	153215839	153215839	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0121951219512195	1	1	0.250753631131817	1.14232209737828	0	1	1	0	aggcaggaggggctgggcccGcagtacacccgcatgaaggc	17	12	0	1	rs3027875		TCGA-OR-A5JD-01A-11D-A29I-10	TCGA-OR-A5JD-10B-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	98c81e55-69a1-4d15-8d59-a092e14f8989	cd3b2d7f-d517-41f5-9c2f-996138055173	.	HCFC1-132	NM_005334	exon24	c.C5859T	p.C1953C	GGGCCCGCAGTAC	.	152	7	138	0	G|0.712;A|0.288	21	21	0	0	0	A	153215839	G	A	153215839	2	1	12	1	0	0	0	0	0	0	0	1	7012	1079	38	1		1	HCFC1	23	153215839	Silent	SNP	G	TCGA-OR-A5JD-01A-11D-A29I-10	180454	153215839	2054721	82	2865										
OPRD1	4985	hgsc.bcm.edu	37	chr1	29138975	29138975	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0705128205128205	11	0.514860817004901	1.54671441918405	2.21097735156091	1.13685005665366	1	1	0	ggacgcctaccctagcgcctGccccagcgctggcgccaatg	12	18	0	0	rs1042114	byfrequency	TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	OPRD1-69	NM_000911	exon1	c.G80T	p.C27F	GCGCCTGCCCCAG	.	5	5	0	0	G|0.061;T|0.939	0	0	0	0	0	T	29138975	G	T	29138975	3	4	13	1	0	0	0	0	1	0	0	0	10913	1319	46	3	82	3	OPRD1	1	29138975	Missense_Mutation	SNP	G	TCGA-OR-A5JF-01A-11D-A29I-10		29138975	220111646	1	2866										
RPAP2	79871	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	92789534	92789534	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0705128205128205	11	0.514860817004901	1.54671441918405	2.21097735156091	1.13685005665366	1	1	0	aagtgtctaggtcagtgtctAgttcagtgcaggtgtgtcct	13	7	4	0	novel		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	RPAP2-91	NM_024813	exon8	c.A1057T	p.S353C	GTGTCTAGTTCAG	.	95	73	123	0	.	1	0	1	0	0	T	92789534	A	T	92789534	3	4	13	1	0	0	0	0	1	0	0	0	13577	420	15	5	1087	5	RPAP2	1	92789534	Missense_Mutation	SNP	A	TCGA-OR-A5JF-01A-11D-A29I-10	63650559	92789534	156461087	2	2867										
AGL	178	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	100376292	100376292	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0705128205128205	11	0.514860817004901	1.54671441918405	2.21097735156091	1.13685005665366	1	1	0	taatataactgcaggagttgAtgaagaaacaggatttgttt	10	3	0	3	novel		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	AGL-92	NM_000644	exon28	c.A3725C	p.D1242A	GAGTTGATGAAGA	.	108	73	159	0	.	3	1	2	0	0	C	100376292	A	C	100376292	3	2	13	1	0	0	0	0	1	0	0	0	384	333	12	5	3900	5	AGL	1	100376292	Missense_Mutation	SNP	A	TCGA-OR-A5JF-01A-11D-A29I-10	7586758	100376292	148874329	3	2868										
VAV3	10451	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	108291635	108291635	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0705128205128205	11	0.514860817004901	1.54671441918405	2.21097735156091	1.13685005665366	1	1	0	atttcttctttaaatcttttGttttgcaataaaattctaac	2	6	4	0	novel		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	VAV3-1339	NM_006113	exon15	c.C1457G	p.T486R	TCTTTTGTTTTGC	.	28	4	38	0	.	0	0	0	0	0	C	108291635	G	C	108291635	3	2	13	1	0	0	0	0	1	0	0	0	17171	1377	48	3	1163	3	VAV3	1	108291635	Missense_Mutation	SNP	G	TCGA-OR-A5JF-01A-11D-A29I-10	7915343	108291635	140958986	4	2869										
RBM15	64783	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	110884071	110884071	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.0705128205128205	11	0.514860817004901	1.54671441918405	2.21097735156091	1.13685005665366	1	1	0	cagaattgagcagtagccggGatcgttacaacagcgacaat	11	9	0	2	novel		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	RBM15-661	NM_022768	exon1	c.G2044C	p.D682H	AGCCGGGATCGTT	.	117	86	119	0	.	1	0	1	0	0	C	110884071	G	C	110884071	3	2	13	1	0	0	0	0	1	0	0	0	13151	1174	41	3	2046	3	RBM15	1	110884071	Missense_Mutation	SNP	G	TCGA-OR-A5JF-01A-11D-A29I-10	2592436	110884071	138366550	5	2870										
DDX20	11218	hgsc.bcm.edu	37	chr1	112298829	112298829	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0705128205128205	11	0.514860817004901	1.54671441918405	2.21097735156091	1.13685005665366	1	1	0	tgcagctcaaggccatcccgTtggggcgctgcgggctcggt	16	13	1	0	rs197393		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	DDX20-227	NM_007204	exon1	c.T283C	p.L95L	ATCCCGTTGGGGC	.	5	4	0	0	T|0.526;C|0.474	0	0	0	0	0	C	112298829	T	C	112298829	2	2	13	1	0	0	0	0	0	0	0	1	4354	1722	60	4		4	DDX20	1	112298829	Silent	SNP	T	TCGA-OR-A5JF-01A-11D-A29I-10	1414758	112298829	136951792	6	2871										
RSBN1	54665	hgsc.bcm.edu	37	chr1	114354654	114354654	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0705128205128205	11	0.514860817004901	1.54671441918405	2.21097735156091	1.13685005665366	1	1	0	acagttggggctgcattcgtTggcggcagcggcccaggatg	17	10	0	0	rs3195954	byfrequency	TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	RSBN1-91	NM_018364	exon1	c.A381G	p.P127P	ATTCGTTGGCGGC	.	18	16	2	0	T|0.861;C|0.139	1	0	1	0	0	C	114354654	T	C	114354654	2	2	13	1	0	0	0	0	0	0	0	1	13731	1799	63	4		4	RSBN1	1	114354654	Silent	SNP	T	TCGA-OR-A5JF-01A-11D-A29I-10	2055825	114354654	134895967	7	2872										
HRNR	388697	broad.mit.edu	37	chr1	152187065	152187065	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0705128205128205	11	0.514860817004901	1.54671441918405	2.21097735156091	1.13685005665366	1	1	0	aaccagaggactgccatgagCtagactcgtggtgaccaaat	11	10	0	4	novel		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	HRNR-93	NM_001009931	exon3	c.G7040C	p.S2347T	CATGAGCTAGACT	.	1959	35	1687	1	.	0	0	0	0	0	G	152187065	C	G	152187065	3	3	13	1	0	0	0	0	1	0	0	0	7380	797	28	3	1516	3	HRNR	1	152187065	Missense_Mutation	SNP	C	TCGA-OR-A5JF-01A-11D-A29I-10	37832411	152187065	97063556	8	2873										
LCE1F	353137	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr1	152749023	152749023	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0705128205128205	11	0.514860817004901	1.54671441918405	2.21097735156091	1.13685005665366	1	1	0	tggctccagctctgggggctGctgcagctctgggggtggtg	19	10	2	0	novel		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	LCE1F-68	NM_178354	exon1	c.G176C	p.C59S	GGGGCTGCTGCAG	.	49	21	52	0	.	0	0	0	0	0	C	152749023	G	C	152749023	3	2	13	1	0	0	0	0	1	0	0	0	8686	1319	46	3	178	3	LCE1F	1	152749023	Missense_Mutation	SNP	G	TCGA-OR-A5JF-01A-11D-A29I-10	561958	152749023	96501598	9	2874										
LCE1E	353135	bcgsc.ca	37	chr1	152760075	152760075	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0705128205128205	11	0.514860817004901	1.54671441918405	2.21097735156091	1.13685005665366	1	1	0	gactgctgcagccagccctcAgggggctccagctgctgtgg	15	14	1	0	rs201660535	byfrequency	TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	LCE1E-90	NM_178353	exon2	c.A300G	p.S100S	GCCCTCAGGGGGC	.	52	29	156	13	A|0.995;G|0.005	0	0	0	0	0	G	152760075	A	G	152760075	2	3	13	1	0	0	0	0	0	0	0	1	8685	175	7	4		4	LCE1E	1	152760075	Silent	SNP	A	TCGA-OR-A5JF-01A-11D-A29I-10	11052	152760075	96490546	10	2875										
OBSCN	84033	broad.mit.edu	37	chr1	228473929	228473929	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0705128205128205	11	0.514860817004901	1.54671441918405	2.21097735156091	1.13685005665366	1	1	0	gcatgccaacgagctcaatgAgatcgatgcccagcccgggg	13	13	1	1	novel		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	OBSCN-403	NM_001271223	exon39	c.A10442G	p.E3481G	TCAATGAGATCGA	.	226	4	222	1	.	1	1	0	0	0	G	228473929	A	G	228473929	3	3	13	1	0	0	0	0	1	0	0	0	10841	304	11	4	9285	4	OBSCN	1	228473929	Missense_Mutation	SNP	A	TCGA-OR-A5JF-01A-11D-A29I-10	75713854	228473929	20776692	11	2876										
TPO	7173	hgsc.bcm.edu	37	chr2	1481231	1481231	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0705128205128205	11	0.514860817004901	1.54671441918405	2.21097735156091	1.13685005665366	1	1	0	ggccggagacggccgcgccaGcgaggtcccctccctgacgg	16	17	0	2	rs2175977	byfrequency	TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	TPO-332	NM_175719	exon8	c.G1193C	p.S398T	GCGCCAGCGAGGT	.	12	12	0	0	G|0.301;C|0.699	0	0	0	0	0	C	1481231	G	C	1481231	3	2	13	1	0	0	0	0	1	0	0	0	16448	971	34	3	1219	3	TPO	2	1481231	Missense_Mutation	SNP	G	TCGA-OR-A5JF-01A-11D-A29I-10		1481231	241718142	12	2877										
CMPK2	129607	hgsc.bcm.edu	37	chr2	7005369	7005369	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0705128205128205	11	0.514860817004901	1.54671441918405	2.21097735156091	1.13685005665366	1	1	0	tgcgggcgtggtgcctcctgAcaggcgcccagcagctcgag	16	14	0	1	rs11678810		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	CMPK2-68	NM_001256478	exon1	c.T459C	p.C153C	CTCCTGACAGGCG	.	4	4	1	0	A|0.003;G|0.997	1	0	1	0	0	G	7005369	A	G	7005369	2	3	13	1	0	0	0	0	0	0	0	1	3587	273	10	4		4	CMPK2	2	7005369	Silent	SNP	A	TCGA-OR-A5JF-01A-11D-A29I-10	5524138	7005369	236194004	13	2878										
DHX57	90957	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	39050210	39050210	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0705128205128205	11	0.514860817004901	1.54671441918405	2.21097735156091	1.13685005665366	1	1	0	cggaagatagacccaaacaaCattagtttgccaattctcac	6	11	1	2	novel		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	DHX57-228	NM_198963	exon17	c.G3216T	p.M1072I	AAACAACATTAGT	.	136	40	222	1	.	10	2	8	0	0	A	39050210	C	A	39050210	3	1	13	1	0	0	0	0	1	0	0	0	4524	478	17	3	976	3	DHX57	2	39050210	Missense_Mutation	SNP	C	TCGA-OR-A5JF-01A-11D-A29I-10	32044841	39050210	204149163	14	2879										
ANKRD39	51239	hgsc.bcm.edu	37	chr2	97523720	97523720	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0705128205128205	11	0.514860817004901	1.54671441918405	2.21097735156091	1.13685005665366	1	1	0	ccgcgcagggccgaggcgtcGccatcccggccccggcgtca	15	19	1	0	rs200576046		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	ANKRD39-44	NM_016466	exon1	c.C5T	p.A2V	GGCGTCGCCATCC	.	16	5	1	0	.	7	7	0	0	0	A	97523720	G	A	97523720	3	1	13	1	0	0	0	0	1	0	0	0	668	1087	38	1	562	1	ANKRD39	2	97523720	Missense_Mutation	SNP	G	TCGA-OR-A5JF-01A-11D-A29I-10	58473510	97523720	145675653	15	2880										
OSBPL6	114880	broad.mit.edu;bcgsc.ca	37	chr2	179251845	179251845	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0705128205128205	11	0.514860817004901	1.54671441918405	2.21097735156091	1.13685005665366	1	1	0	ggaaatcctgcctgttggaaCactgaatgtcatgcttccaa	9	10	1	1	novel		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	OSBPL6-69	NM_001201480	exon21	c.C2210T	p.T737I	TTGGAACACTGAA	.	109	5	136	0	.	6	6	0	0	0	T	179251845	C	T	179251845	3	4	13	1	0	0	0	0	1	0	0	0	11310	478	17	3	2327	3	OSBPL6	2	179251845	Missense_Mutation	SNP	C	TCGA-OR-A5JF-01A-11D-A29I-10	81728125	179251845	63947528	16	2881										
ZC3H15	55854	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	187373328	187373328	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0705128205128205	11	0.514860817004901	1.54671441918405	2.21097735156091	1.13685005665366	1	1	0	aatggtgaaagaagtgacttGgaagaggacaacgagaggga	16	3	0	5	novel		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	ZC3H15-91	NM_018471	exon10	c.G1149T	p.L383F	TGACTTGGAAGAG	.	113	79	175	1	.	109	2	107	0	0	T	187373328	G	T	187373328	3	4	13	1	0	0	0	0	1	0	0	0	17604	1339	47	3	1187	3	ZC3H15	2	187373328	Missense_Mutation	SNP	G	TCGA-OR-A5JF-01A-11D-A29I-10	8121483	187373328	55826045	17	2882										
SMARCAL1	50485	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	217285234	217285234	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0705128205128205	11	0.514860817004901	1.54671441918405	2.21097735156091	1.13685005665366	1	1	0	accttattgcgctttttaaaCagatggattccagaagatat	7	7	0	3	novel		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	SMARCAL1-293	NM_014140	exon5	c.C1075T	p.Q359X	TTTAAACAGATGG	.	148	115	167	2	.	3	1	2	0	0	T	217285234	C	T	217285234	4	4	13	1	0	0	0	0	0	1	0	0	14808	479	17	3	1085	3	SMARCAL1	2	217285234	Nonsense_Mutation	SNP	C	TCGA-OR-A5JF-01A-11D-A29I-10	29911906	217285234	25914139	18	2883										
FAM134A	79137	hgsc.bcm.edu	37	chr2	220043233	220043233	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0705128205128205	11	0.514860817004901	1.54671441918405	2.21097735156091	1.13685005665366	1	1	0	gaggcggtgggacgcctggcCacgacgctgtggctgcggct	19	12	0	0	novel		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	FAM134A-91	NM_024293	exon1	c.C159T	p.A53A	CCTGGCCACGACG	.	16	15	1	0	.	3	0	3	0	0	T	220043233	C	T	220043233	2	4	13	1	0	0	0	0	0	0	0	1	5461	581	21	3		3	FAM134A	2	220043233	Silent	SNP	C	TCGA-OR-A5JF-01A-11D-A29I-10	2757999	220043233	23156140	19	2884										
SNED1	25992	hgsc.bcm.edu	37	chr2	242011084	242011084	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0705128205128205	11	0.514860817004901	1.54671441918405	2.21097735156091	1.13685005665366	1	1	0	cccggcgcgcctgccggagcTgcgcctgctcaatgaccaca	12	18	1	1	rs17440466	byfrequency	TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	SNED1-72	NM_001080437	exon25	c.T3683C	p.L1228P	CGGAGCTGCGCCT	.	11	11	1	0	T|0.877;C|0.123	7	0	7	0	0	C	242011084	T	C	242011084	3	2	13	1	0	0	0	0	1	0	0	0	14880	1580	55	4	3781	4	SNED1	2	242011084	Missense_Mutation	SNP	T	TCGA-OR-A5JF-01A-11D-A29I-10	21967851	242011084	1188289	20	2885										
CX3CR1	1524	bcgsc.ca	37	chr3	39307256	39307256	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0705128205128205	11	0.514860817004901	1.54671441918405	2.21097735156091	1.13685005665366	1	1	0	cgtctccaggaaaatcataaCgttgtagggtgtccagaaga	11	8	2	2	rs3732379	byfrequency	TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	CX3CR1-658	NM_001171174	exon2	c.G841A	p.V281I	TCATAACGTTGTA	.	169	6	198	0	C|0.832;T|0.168	1	1	0	0	0	T	39307256	C	T	39307256	3	4	13	1	0	0	0	0	1	0	0	0	4081	536	19	1	326	1	CX3CR1	3	39307256	Missense_Mutation	SNP	C	TCGA-OR-A5JF-01A-11D-A29I-10		39307256	158715174	21	2886										
VPRBP	9730	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	51457650	51457650	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0705128205128205	11	0.514860817004901	1.54671441918405	2.21097735156091	1.13685005665366	1	1	0	gaggatgagcagtaggggcaGaaggcgcagaggcacccaca	17	9	0	3	novel		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	VPRBP-92	NM_014703	exon14	c.C2615G	p.S872C	GGGGCAGAAGGCG	.	83	57	74	0	.	8	0	8	0	0	C	51457650	G	C	51457650	3	2	13	1	0	0	0	0	1	0	0	0	17223	942	33	3	1793	3	VPRBP	3	51457650	Missense_Mutation	SNP	G	TCGA-OR-A5JF-01A-11D-A29I-10	12150394	51457650	146564780	22	2887										
LRIG1	26018	hgsc.bcm.edu	37	chr3	66550762	66550762	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0705128205128205	11	0.514860817004901	1.54671441918405	2.21097735156091	1.13685005665366	1	1	0	cggctccagccgaagcaaaaGcagccagagaaggagaaggc	14	11	0	2	rs1403626	byfrequency	TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	LRIG1-230	NM_015541	exon1	c.C70G	p.L24V	GCAAAAGCAGCCA	.	6	6	0	0	G|0.252;C|0.748	0	0	0	0	0	C	66550762	G	C	66550762	3	2	13	1	0	0	0	0	1	0	0	0	8971	971	34	3	3287	3	LRIG1	3	66550762	Missense_Mutation	SNP	G	TCGA-OR-A5JF-01A-11D-A29I-10	15093112	66550762	131471668	23	2888										
AMOTL2	51421	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	134089857	134089857	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0705128205128205	11	0.514860817004901	1.54671441918405	2.21097735156091	1.13685005665366	1	1	0	gggcctcgtcctgcctccgaCtgcctcccggggccccacgg	13	20	0	0	novel		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	AMOTL2-135	NM_016201	exon2	c.G419T	p.S140I	CTCCGACTGCCTC	.	75	18	19	0	.	2	2	0	0	0	A	134089857	C	A	134089857	3	1	13	1	0	0	0	0	1	0	0	0	584	565	20	3	1959	3	AMOTL2	3	134089857	Missense_Mutation	SNP	C	TCGA-OR-A5JF-01A-11D-A29I-10	67539095	134089857	63932573	24	2889										
NAALADL2	254827	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	174814615	174814615	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0705128205128205	11	0.514860817004901	1.54671441918405	2.21097735156091	1.13685005665366	1	1	0	atcagaaggtccatgcagatCaaagagctccaggacactca	9	11	3	3	novel		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	NAALADL2-47	NM_207015	exon2	c.C79T	p.Q27X	GCAGATCAAAGAG	.	131	102	131	0	.	0	0	0	0	0	T	174814615	C	T	174814615	4	4	13	1	0	0	0	0	0	1	0	0	10158	827	29	3	85	3	NAALADL2	3	174814615	Nonsense_Mutation	SNP	C	TCGA-OR-A5JF-01A-11D-A29I-10	40724758	174814615	23207815	25	2890										
SH3BP2	6452	bcgsc.ca	37	chr4	2826400	2826400	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0705128205128205	11	0.514860817004901	1.54671441918405	2.21097735156091	1.13685005665366	1	1	0	ttccccttcaagatcatccaTatcagcaagaagcaccgcac	5	15	3	2	rs3213501	byfrequency	TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	SH3BP2-514	NM_001145856	exon4	c.T471C	p.H157H	CATCCATATCAGC	.	116	6	80	0	T|0.225;C|0.775	4	4	0	0	0	C	2826400	T	C	2826400	2	2	13	1	0	0	0	0	0	0	0	1	14280	1403	49	4		4	SH3BP2	4	2826400	Silent	SNP	T	TCGA-OR-A5JF-01A-11D-A29I-10		2826400	188327876	26	2891										
PCDH7	5099	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	30725207	30725207	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0705128205128205	11	0.514860817004901	1.54671441918405	2.21097735156091	1.13685005665366	1	1	0	gtggatgggggagatcctccCagatctgccacagctacagt	13	11	1	2	novel		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	PCDH7-229	NM_032457	exon1	c.C2163A	p.P721P	TCCTCCCAGATCT	.	189	79	147	0	.	0	0	0	0	0	A	30725207	C	A	30725207	2	1	13	1	0	0	0	0	0	0	0	1	11545	581	21	3		3	PCDH7	4	30725207	Silent	SNP	C	TCGA-OR-A5JF-01A-11D-A29I-10	27898807	30725207	160429069	27	2892										
NMU	10874	hgsc.bcm.edu	37	chr4	56502307	56502307	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0705128205128205	11	0.514860817004901	1.54671441918405	2.21097735156091	1.13685005665366	1	1	0	gcagcaggagcggggacgccGcggccacctgtccggcgggc	19	15	0	0	rs3828555	byfrequency	TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	NMU-650	NM_006681	exon1	c.C53A	p.A18E	GACGCCGCGGCCA	.	12	5	0	0	G|0.853;T|0.147	0	0	0	0	0	T	56502307	G	T	56502307	3	4	13	1	0	0	0	0	1	0	0	0	10534	1087	38	2	507	2	NMU	4	56502307	Missense_Mutation	SNP	G	TCGA-OR-A5JF-01A-11D-A29I-10	25777100	56502307	134651969	28	2893										
RASGEF1B	153020	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	82366716	82366716	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0705128205128205	11	0.514860817004901	1.54671441918405	2.21097735156091	1.13685005665366	1	1	0	ggagttgaagttgccaatgtTaaaacactcccgagctacgt	10	9	0	1	novel		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	RASGEF1B-227	NM_152545	exon8	c.A892C	p.N298H	CAATGTTAAAACA	.	139	58	117	0	.	0	0	0	0	0	G	82366716	T	G	82366716	3	3	13	1	0	0	0	0	1	0	0	0	13105	1754	61	5	557	5	RASGEF1B	4	82366716	Missense_Mutation	SNP	T	TCGA-OR-A5JF-01A-11D-A29I-10	25864409	82366716	108787560	29	2894										
COQ2	27235	hgsc.bcm.edu	37	chr4	84205872	84205872	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0705128205128205	11	0.514860817004901	1.54671441918405	2.21097735156091	1.13685005665366	1	1	0	cggcagccacgccagtgccaCagcccgcaggccccgcgcga	13	20	0	0	rs6818847	byfrequency	TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	COQ2-92	NM_015697	exon1	c.G196T	p.V66L	GTGCCACAGCCCG	.	8	7	0	0	C|0.324;A|0.676	0	0	0	0	0	A	84205872	C	A	84205872	3	1	13	1	0	0	0	0	1	0	0	0	3751	478	17	3	1097	3	COQ2	4	84205872	Missense_Mutation	SNP	C	TCGA-OR-A5JF-01A-11D-A29I-10	1839156	84205872	106948404	30	2895										
DSPP	1834	bcgsc.ca	37	chr4	88537126	88537126	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0705128205128205	11	0.514860817004901	1.54671441918405	2.21097735156091	1.13685005665366	1	1	0	gatagcagcgacagcagcgaCagcagcgatagcagtgacag	14	10	0	1	novel		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	DSPP-90	NM_014208	exon5	c.C3312T	p.D1104D	CAGCGACAGCAGC	.	346	28	164	3	.	0	0	0	0	0	T	88537126	C	T	88537126	2	4	13	1	0	0	0	0	0	0	0	1	4793	477	17	3		3	DSPP	4	88537126	Silent	SNP	C	TCGA-OR-A5JF-01A-11D-A29I-10	4331254	88537126	102617150	31	2896										
ADAMTS16	170690	hgsc.bcm.edu	37	chr5	5140632	5140632	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0705128205128205	11	0.514860817004901	1.54671441918405	2.21097735156091	1.13685005665366	1	1	0	tggcggcgctgtggatgctgTtggcgcaggtggccgagcag	20	9	0	0	rs270208	byfrequency	TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	ADAMTS16-275	NM_139056	exon1	c.T52C	p.L18L	ATGCTGTTGGCGC	.	6	4	0	0	T|0.352;C|0.648	0	0	0	0	0	C	5140632	T	C	5140632	2	2	13	1	0	0	0	0	0	0	0	1	261	1722	60	4		4	ADAMTS16	5	5140632	Silent	SNP	T	TCGA-OR-A5JF-01A-11D-A29I-10		5140632	175774628	32	2897										
MAST4	375449	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	66429340	66429340	+	Splice_Site	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0705128205128205	11	0.514860817004901	1.54671441918405	2.21097735156091	1.13685005665366	1	1	0	tacatgtccgtctgcctcatAgcttgttggttacctccatg	8	12	2	0	novel		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	MAST4-647	NM_001164664	exon17	c.2094-2A>G	.	CCTCATAGCTTGT	.	251	41	159	0	.	0	0	0	0	0	G	66429340	A	G	66429340	5	3	13	1	0	0	0	0	0	0	1	0	9355	434	15	4	2288	4	MAST4	5	66429340	Splice_Site	SNP	A	TCGA-OR-A5JF-01A-11D-A29I-10	61288708	66429340	114485920	33	2898										
PDE8B	8622	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	76717663	76717663	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0705128205128205	11	0.514860817004901	1.54671441918405	2.21097735156091	1.13685005665366	1	1	0	cagattgaaggcagcgactgTgaatgcaaccctgctgggaa	13	9	0	3	novel		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	PDE8B-90	NM_003719	exon20	c.T2268G	p.C756W	CGACTGTGAATGC	.	278	36	173	1	.	17	16	1	0	0	G	76717663	T	G	76717663	3	3	13	1	0	0	0	0	1	0	0	0	11683	1702	59	5	2346	5	PDE8B	5	76717663	Missense_Mutation	SNP	T	TCGA-OR-A5JF-01A-11D-A29I-10	10288323	76717663	104197597	34	2899										
ADAMTS19	171019	broad.mit.edu;bcgsc.ca	37	chr5	129037114	129037114	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0705128205128205	11	0.514860817004901	1.54671441918405	2.21097735156091	1.13685005665366	1	1	0	gaatggaccccttgttcacgAacttgtggaaaaggaatgca	11	8	1	0	novel		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	ADAMTS19-295	NM_133638	exon20	c.A2970T	p.R990R	TTCACGAACTTGT	.	348	9	250	0	.	0	0	0	0	0	T	129037114	A	T	129037114	2	4	13	1	0	0	0	0	0	0	0	1	264	233	9	5		5	ADAMTS19	5	129037114	Silent	SNP	A	TCGA-OR-A5JF-01A-11D-A29I-10	52319451	129037114	51878146	35	2900										
PCDHB2	56133	broad.mit.edu	37	chr5	140476411	140476411	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0705128205128205	11	0.514860817004901	1.54671441918405	2.21097735156091	1.13685005665366	1	1	0	ctgctgctcccggaggcggcAccggcccaggcccaggccga	15	18	0	0	novel		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	PCDHB2-96	NM_018936	exon1	c.A2037C	p.A679A	GGCGGCACCGGCC	.	233	11	45	1	.	17	17	0	0	0	C	140476411	A	C	140476411	2	2	13	1	0	0	0	0	0	0	0	1	11571	146	6	5		5	PCDHB2	5	140476411	Silent	SNP	A	TCGA-OR-A5JF-01A-11D-A29I-10	11439297	140476411	40438849	36	2901										
PCDHGA7	56108	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	140764326	140764326	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0705128205128205	11	0.514860817004901	1.54671441918405	2.21097735156091	1.13685005665366	1	1	0	ccaggactctttgcggttggGctgtacacgggcgaggtgcg	17	10	1	0	novel		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	.	NM_032087	exon1	c.G1860T	p.G620G	GGTTGGGCTGTAC	.	407	67	222	1	.	10	2	8	0	0	T	140764326	G	T	140764326	2	4	13	1	0	0	0	0	0	0	0	1	11588	1190	42	3		3	PCDHGA7	5	140764326	Silent	SNP	G	TCGA-OR-A5JF-01A-11D-A29I-10	287915	140764326	40150934	37	2902										
FLT4	2324	broad.mit.edu;bcgsc.ca	37	chr5	180048668	180048668	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0705128205128205	11	0.514860817004901	1.54671441918405	2.21097735156091	1.13685005665366	1	1	0	caggctgagcgtggcgtggcGcgccccaggtgccacctcct	15	16	0	1	novel		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	FLT4-1490	NM_182925	exon13	c.C1894A	p.R632S	CGTGGCGCGCCCC	.	303	130	50	1	.	5	5	0	0	0	T	180048668	G	T	180048668	3	4	13	1	0	0	0	0	1	0	0	0	5963	1087	38	2	2277	2	FLT4	5	180048668	Missense_Mutation	SNP	G	TCGA-OR-A5JF-01A-11D-A29I-10	39284342	180048668	866592	38	2903										
ATXN1	6310	broad.mit.edu	37	chr6	16327864	16327865	+	In_Frame_Ins	INS	-	-	TGC													0.0705128205128205	11	0.514860817004901	1.54671441918405	2.21097735156091	1.13685005665366	1	1	0	gccccggagccctgctgaggINStgctgctgctgctgctgctg					rs71806515		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	ATXN1-93	NM_001128164	exon7	c.678_679insGCA	p.H226delinsQH	GCTGAGGTGCTGC	.	40	15	53	0	.	0	0	0	0	0	TGC	16327865	-	TGC	16327864	7	5	13	1	0	1	1	0	0	0	0	0	1210	1252	44	0	1777	0	ATXN1	6	16327864	In_Frame_Ins	INS	-	TCGA-OR-A5JF-01A-11D-A29I-10		16327864	154787203	39	2904										
SLC44A4	80736	bcgsc.ca	37	chr6	31842598	31842598	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0705128205128205	11	0.514860817004901	1.54671441918405	2.21097735156091	1.13685005665366	1	1	0	tttttcccacagtccatgggTcctccgggcaggaggacaca	11	13	0	0	rs12661281	byfrequency	TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	SLC44A4-156	NM_025257	exon6	c.A368T	p.D123V	CATGGGTCCTCCG	.	85	5	132	1	T|0.871;A|0.129	4	4	0	0	0	A	31842598	T	A	31842598	3	1	13	1	0	0	0	0	1	0	0	0	14673	1667	58	5	1828	5	SLC44A4	6	31842598	Missense_Mutation	SNP	T	TCGA-OR-A5JF-01A-11D-A29I-10	15514734	31842598	139272469	40	2905										
B3GAT2	135152	hgsc.bcm.edu	37	chr6	71665731	71665731	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0705128205128205	11	0.514860817004901	1.54671441918405	2.21097735156091	1.13685005665366	1	1	0	tgcaggtgagtgctgggcagCccggcccgcgccaggaagcg	18	13	0	1	rs149577161		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	B3GAT2-93	NM_080742	exon1	c.G402A	p.G134G	GGGCAGCCCGGCC	.	19	16	0	0	C|0.993;T|0.007	0	0	0	0	0	T	71665731	C	T	71665731	2	4	13	1	0	0	0	0	0	0	0	1	1255	726	26	3		3	B3GAT2	6	71665731	Silent	SNP	C	TCGA-OR-A5JF-01A-11D-A29I-10	39823133	71665731	99449336	41	2906										
RARS2	57038	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	88229355	88229355	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0705128205128205	11	0.514860817004901	1.54671441918405	2.21097735156091	1.13685005665366	1	1	0	ttgaatctcatttaaaacatCttccaggaaagtgacatctc	5	9	3	2	novel		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	RARS2-92	NM_020320	exon14	c.G1183C	p.D395H	AAACATCTTCCAG	.	147	104	205	0	.	43	0	43	0	0	G	88229355	C	G	88229355	3	3	13	1	0	0	0	0	1	0	0	0	13094	913	32	3	581	3	RARS2	6	88229355	Missense_Mutation	SNP	C	TCGA-OR-A5JF-01A-11D-A29I-10	16563624	88229355	82885712	42	2907										
NUS1	116150	broad.mit.edu;bcgsc.ca	37	chr6	118015275	118015275	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0705128205128205	11	0.514860817004901	1.54671441918405	2.21097735156091	1.13685005665366	1	1	0	aagagctgctcaggacttttGccagttagtagcccagaagc	11	10	1	2	novel		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	NUS1-108	NM_138459	exon3	c.G623C	p.C208S	ACTTTTGCCAGTT	.	227	17	213	0	.	42	42	0	0	0	C	118015275	G	C	118015275	3	2	13	1	0	0	0	0	1	0	0	0	10806	1319	46	3	633	3	NUS1	6	118015275	Missense_Mutation	SNP	G	TCGA-OR-A5JF-01A-11D-A29I-10	29785920	118015275	53099792	43	2908										
SMOC2	64094	hgsc.bcm.edu	37	chr6	168842113	168842113	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0705128205128205	11	0.514860817004901	1.54671441918405	2.21097735156091	1.13685005665366	1	1	0	ctgctcccgccggtgcccgcTcagaagttctcggcgctcac	11	18	3	1	rs73270928	byfrequency	TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	SMOC2-91	NM_022138	exon1	c.T63G	p.A21A	GCCCGCTCAGAAG	.	55	11	2	0	T|0.654;G|0.346	0	0	0	0	0	G	168842113	T	G	168842113	2	3	13	1	0	0	0	0	0	0	0	1	14837	1538	54	5		5	SMOC2	6	168842113	Silent	SNP	T	TCGA-OR-A5JF-01A-11D-A29I-10	50826838	168842113	2272954	44	2909										
USP42	84132	hgsc.bcm.edu	37	chr7	6193521	6193521	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0705128205128205	11	0.514860817004901	1.54671441918405	2.21097735156091	1.13685005665366	1	1	0	caagaaggctccgccgccccGcgatcccggcacccccgcta	10	21	0	1	rs61729726	byfrequency	TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	USP42-659	NM_032172	exon15	c.G2336C	p.R779P	CGCCCCGCGATCC	.	10	5	0	0	G|0.456;C|0.544	3	0	3	0	0	C	6193521	G	C	6193521	3	2	13	1	0	0	0	0	1	0	0	0	17111	1087	38	2		2	USP42	7	6193521	Missense_Mutation	SNP	G	TCGA-OR-A5JF-01A-11D-A29I-10		6193521	152945142	45	2910										
SCIN	85477	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr7	12664641	12664641	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0705128205128205	11	0.514860817004901	1.54671441918405	2.21097735156091	1.13685005665366	1	1	0	ggtttttatattaggtttcaGatgcaagtggctccatgaga	11	5	1	2	novel		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	SCIN-24	NM_001112706	exon6	c.G766C	p.D256H	GTTTCAGATGCAA	.	106	7	78	0	.	0	0	0	0	0	C	12664641	G	C	12664641	3	2	13	1	0	0	0	0	1	0	0	0	13940	942	33	3	788	3	SCIN	7	12664641	Missense_Mutation	SNP	G	TCGA-OR-A5JF-01A-11D-A29I-10	6471120	12664641	146474022	46	2911										
AMPH	273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	38500996	38500996	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0705128205128205	11	0.514860817004901	1.54671441918405	2.21097735156091	1.13685005665366	1	1	0	tttaggtagaggtgggacagGaggccctttccttgtctagg	15	7	1	1	novel		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	AMPH-95	NM_139316	exon11	c.C904T	p.P302S	GGACAGGAGGCCC	.	260	54	150	0	.	0	0	0	0	0	A	38500996	G	A	38500996	3	1	13	1	0	0	0	0	1	0	0	0	588	1174	41	3	1227	3	AMPH	7	38500996	Missense_Mutation	SNP	G	TCGA-OR-A5JF-01A-11D-A29I-10	25836355	38500996	120637667	47	2912										
CDK13	8621	hgsc.bcm.edu	37	chr7	39990355	39990355	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0705128205128205	11	0.514860817004901	1.54671441918405	2.21097735156091	1.13685005665366	1	1	0	tgtcccctcagcagccgccgCtgctgttgccgctcctgcag	11	18	1	0	novel		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	CDK13-548	NM_003718	exon1	c.C115T	p.L39L	CCGCCGCTGCTGT	.	20	9	2	0	.	3	2	1	0	0	T	39990355	C	T	39990355	2	4	13	1	0	0	0	0	0	0	0	1	3135	796	28	3		3	CDK13	7	39990355	Silent	SNP	C	TCGA-OR-A5JF-01A-11D-A29I-10	1489359	39990355	119148308	48	2913										
COL1A2	1278	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	94055328	94055328	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0705128205128205	11	0.514860817004901	1.54671441918405	2.21097735156091	1.13685005665366	1	1	0	agggtccttctggtcctgttGgtcctgctggtgctgttggc	15	10	1	0	novel		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	COL1A2-521	NM_000089	exon45	c.G2962C	p.G988R	CCTGTTGGTCCTG	.	124	46	95	0	.	63	63	0	0	0	C	94055328	G	C	94055328	3	2	13	1	0	0	0	0	1	0	0	0	3684	1348	47	3	3140	3	COL1A2	7	94055328	Missense_Mutation	SNP	G	TCGA-OR-A5JF-01A-11D-A29I-10	54064973	94055328	65083335	49	2914										
LMTK2	22853	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	97821142	97821142	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0705128205128205	11	0.514860817004901	1.54671441918405	2.21097735156091	1.13685005665366	1	1	0	cactttgccagggaccggctGggtcgtgaaatggaggaagt	16	8	0	1	novel		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	LMTK2-1381	NM_014916	exon11	c.G1365A	p.L455L	CCGGCTGGGTCGT	.	204	33	124	1	.	3	1	2	0	0	A	97821142	G	A	97821142	2	1	13	1	0	0	0	0	0	0	0	1	8883	1335	47	3		3	LMTK2	7	97821142	Silent	SNP	G	TCGA-OR-A5JF-01A-11D-A29I-10	3765814	97821142	61317521	50	2915										
CADPS2	93664	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	122130227	122130227	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0705128205128205	11	0.514860817004901	1.54671441918405	2.21097735156091	1.13685005665366	1	1	0	tatatgattgacctgtggccCtatacatggcttgaacccat	8	10	0	3	novel		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	CADPS2-94	NM_001167940	exon11	c.G1760C	p.R587T	GTGGCCCTATACA	.	160	75	103	0	.	23	12	11	0	0	G	122130227	C	G	122130227	3	3	13	1	0	0	0	0	1	0	0	0	2577	681	24	3	2254	3	CADPS2	7	122130227	Missense_Mutation	SNP	C	TCGA-OR-A5JF-01A-11D-A29I-10	24309085	122130227	37008436	51	2916										
PAXIP1	22976	bcgsc.ca;mdanderson.org	37	chr7	154760666	154760666	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0705128205128205	11	0.514860817004901	1.54671441918405	2.21097735156091	1.13685005665366	1	1	0	tggggctgaaggtgtaaaacCgggtgctgctgctgctgctg	17	8	0	1	rs61752011	byfrequency;alternate_allele	TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	PAXIP1-228	NM_007349	exon7	c.G1245T	p.P415P	TAAAACCGGGTGC	.	69	30	43	1	C|0.784;T|0.216	1	0	1	0	0	A	154760666	C	A	154760666	2	1	13	1	0	0	0	0	0	0	0	1	11516	639	23	2		2	PAXIP1	7	154760666	Silent	SNP	C	TCGA-OR-A5JF-01A-11D-A29I-10	32630439	154760666	4377997	52	2917										
CRH	1392	hgsc.bcm.edu	37	chr8	67089425	67089425	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0705128205128205	11	0.514860817004901	1.54671441918405	2.21097735156091	1.13685005665366	1	1	0	gaagggcggctgccgctgccTccggcgaggagcgaggaggc	20	12	0	0	rs6159	byfrequency;by2hit2allele;by1000genomes	TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	CRH-90	NM_000756	exon2	c.A288C	p.G96G	GCTGCCTCCGGCG	.	15	14	2	0	T|0.642;G|0.358	0	0	0	0	0	G	67089425	T	G	67089425	2	3	13	1	0	0	0	0	0	0	0	1	3875	1538	54	5		5	CRH	8	67089425	Silent	SNP	T	TCGA-OR-A5JF-01A-11D-A29I-10		67089425	79274597	53	2918										
SULF1	23213	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	70533313	70533313	+	Missense_Mutation	SNP	A	A	T													0.0705128205128205	11	0.514860817004901	1.54671441918405	2.21097735156091	1.13685005665366	1	1	0	atctggcaagcttcgaattcAcaagtgtaaaggacccagtg					novel		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	SULF1-518	NM_001128205	exon14	c.A1421T	p.H474L	GAATTCACAAGTG	.	133	21	86	0	.	0	0	0	0	0	T	70533313	A	T	70533313	3	4	13	1	0	0	0	0	1	0	0	0	15407	159	6	5	1459	5	SULF1	8	70533313	Missense_Mutation	SNP	A	TCGA-OR-A5JF-01A-11D-A29I-10	3443888	70533313	75830709	54	2919	22	2								
SULF1	23213	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	70533314	70533314	+	Silent	SNP	C	C	T													0.0705128205128205	11	0.514860817004901	1.54671441918405	2.21097735156091	1.13685005665366	1	1	0	tctggcaagcttcgaattcaCaagtgtaaaggacccagtga					novel		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	SULF1-518	NM_001128205	exon14	c.C1422T	p.H474H	AATTCACAAGTGT	.	135	22	88	1	.	0	0	0	0	0	T	70533314	C	T	70533314	2	4	13	1	0	0	0	0	0	0	0	1	15407	477	17	3		3	SULF1	8	70533314	Silent	SNP	C	TCGA-OR-A5JF-01A-11D-A29I-10	1	70533314	75830708	55	2920	22	2								
EXT1	2131	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	118816990	118816990	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0705128205128205	11	0.514860817004901	1.54671441918405	2.21097735156091	1.13685005665366	1	1	0	cattgtctccttatactgctTcttctgggtcactttgattg	7	10	4	1	novel		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	EXT1-660	NM_000127	exon10	c.A2026G	p.K676E	ACTGCTTCTTCTG	.	358	76	195	2	.	124	98	26	0	0	C	118816990	T	C	118816990	3	2	13	1	0	0	0	0	1	0	0	0	5336	1792	62	4	222	4	EXT1	8	118816990	Missense_Mutation	SNP	T	TCGA-OR-A5JF-01A-11D-A29I-10	48283676	118816990	27547032	56	2921										
MAL2	114569	hgsc.bcm.edu	37	chr8	120220776	120220776	+	Splice_Site	DEL	G	G	-													0.0705128205128205	11	0.514860817004901	1.54671441918405	2.21097735156091	1.13685005665366	1	1	0	cgtgtccttcccgccgccccGgggtcaccctgcccgccggc					novel		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	.	NM_052886	exon1	c.64+1G>-	.	CGCCCCGGGGTCA	.	15	14	0	0	.	0	0	0	0	0	-	120220776	G	-	120220776	8	5	13	1	0	1	0	1	0	0	1	0	9228	1116	39	0	67	0	MAL2	8	120220776	Splice_Site	DEL	G	TCGA-OR-A5JF-01A-11D-A29I-10	1403786	120220776	26143246	57	2922										
SHARPIN	81858	hgsc.bcm.edu	37	chr8	145158503	145158503	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0705128205128205	11	0.514860817004901	1.54671441918405	2.21097735156091	1.13685005665366	1	1	0	cagccggaagcgcccaggccGctcagggtccgcgctcagct	14	17	2	0	rs11136254		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	SHARPIN-523	NM_030974	exon1	c.C154A	p.R52R	CAGGCCGCTCAGG	.	4	4	0	0	G|0.108;T|0.892	43	0	43	0	0	T	145158503	G	T	145158503	2	4	13	1	0	0	0	0	0	0	0	1	14302	1086	38	2		2	SHARPIN	8	145158503	Silent	SNP	G	TCGA-OR-A5JF-01A-11D-A29I-10	24937727	145158503	1205519	58	2923										
RECQL4	9401	hgsc.bcm.edu	37	chr8	145738764	145738764	+	Frame_Shift_Del	DEL	A	A	-													0.0705128205128205	11	0.514860817004901	1.54671441918405	2.21097735156091	1.13685005665366	1	1	0	aggccaccgtggccaccaccAcccggcaactggccctgcat					novel		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	RECQL4-1083	NM_004260	exon15	c.2300delT	p.V767fs	ACCACCACCCGGC	.	255	0	42	0	.	0	0	0	0	0	-	145738764	A	-	145738764	7	5	13	1	0	1	0	1	0	0	0	0	13237	146	6	0	1358	0	RECQL4	8	145738764	Frame_Shift_Del	DEL	A	TCGA-OR-A5JF-01A-11D-A29I-10	580261	145738764	625258	59	2924										
ZNF517	340385	hgsc.bcm.edu	37	chr8	146033347	146033347	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0705128205128205	11	0.514860817004901	1.54671441918405	2.21097735156091	1.13685005665366	1	1	0	gggtgcccaggacggcggcgTggggcagggcgccctgctcg	21	13	0	0	rs2976653		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	ZNF517-90	NM_213605	exon5	c.T1046C	p.V349A	GCGGCGTGGGGCA	.	12	12	0	0	G|0.992;C|0.006	1	0	1	0	0	C	146033347	T	C	146033347	3	2	13	1	0	0	0	0	1	0	0	0	17998	1696	59	4	1060	4	ZNF517	8	146033347	Missense_Mutation	SNP	T	TCGA-OR-A5JF-01A-11D-A29I-10	294583	146033347	330675	60	2925										
C9orf66	157983	hgsc.bcm.edu	37	chr9	214679	214679	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0705128205128205	11	0.514860817004901	1.54671441918405	2.21097735156091	1.13685005665366	1	1	0	ccggaggtcggcggccccggGcagagcgcgccgtctgcccc	17	18	1	1	rs117856897	byfrequency	TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	C9orf66-514	NM_152569	exon1	c.C718T	p.P240S	CCCCGGGCAGAGC	.	12	6	1	0	G|0.986;A|0.014	0	0	0	0	0	A	214679	G	A	214679	3	1	13	1	0	0	0	0	1	0	0	0	2496	1203	42	3	173	3	C9orf66	9	214679	Missense_Mutation	SNP	G	TCGA-OR-A5JF-01A-11D-A29I-10		214679	140998752	61	2926										
ERMP1	79956	hgsc.bcm.edu	37	chr9	5832928	5832928	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0705128205128205	11	0.514860817004901	1.54671441918405	2.21097735156091	1.13685005665366	1	1	0	caccagaggctcctgcgctcGggcctccctctccggcggtg	13	18	1	1	rs13283149	byfrequency	TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	ERMP1-69	NM_024896	exon1	c.C100G	p.R34G	GCGCTCGGGCCTC	.	13	5	1	0	G|0.987;C|0.013	2	1	1	0	0	C	5832928	G	C	5832928	3	2	13	1	0	0	0	0	1	0	0	0	5249	1124	39	2	2674	2	ERMP1	9	5832928	Missense_Mutation	SNP	G	TCGA-OR-A5JF-01A-11D-A29I-10	5618249	5832928	135380503	62	2927										
PRSS3	5646	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr9	33797865	33797865	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0705128205128205	11	0.514860817004901	1.54671441918405	2.21097735156091	1.13685005665366	1	1	0	gggagagcacaacatcaaagTcctggaggggaatgagcagt	15	7	1	2	novel		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	PRSS3-90	NM_007343	exon3	c.T410A	p.V137D	TCAAAGTCCTGGA	.	481	199	294	0	.	0	0	0	0	0	A	33797865	T	A	33797865	3	1	13	1	0	0	0	0	1	0	0	0	12654	1667	58	5	464	5	PRSS3	9	33797865	Missense_Mutation	SNP	T	TCGA-OR-A5JF-01A-11D-A29I-10	27964937	33797865	107415566	63	2928										
COL27A1	85301	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	117053185	117053185	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0705128205128205	11	0.514860817004901	1.54671441918405	2.21097735156091	1.13685005665366	1	1	0	ttacctggagcacagggaccCccaggattcaaggtcagata	11	11	2	1	novel		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	COL27A1-94	NM_032888	exon48	c.C4464T	p.P1488P	GGGACCCCCAGGA	.	292	128	231	1	.	0	0	0	0	0	T	117053185	C	T	117053185	2	4	13	1	0	0	0	0	0	0	0	1	3691	610	22	3		3	COL27A1	9	117053185	Silent	SNP	C	TCGA-OR-A5JF-01A-11D-A29I-10	83255320	117053185	24160246	64	2929										
TLR4	7099	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr9	120475205	120475205	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0705128205128205	11	0.514860817004901	1.54671441918405	2.21097735156091	1.13685005665366	1	1	0	tgggagaatttagaaatgaaGgaaacttggaaaagtttgac	12	2	0	4	novel		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	TLR4-577	NM_138554	exon3	c.G799A	p.G267R	AATGAAGGAAACT	.	68	18	74	0	.	1	0	1	0	0	A	120475205	G	A	120475205	3	1	13	1	0	0	0	0	1	0	0	0	15990	1001	35	3	809	3	TLR4	9	120475205	Missense_Mutation	SNP	G	TCGA-OR-A5JF-01A-11D-A29I-10	3422020	120475205	20738226	65	2930										
RPL12	6136	bcgsc.ca	37	chr9	130211601	130211601	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0705128205128205	11	0.514860817004901	1.54671441918405	2.21097735156091	1.13685005665366	1	1	0	ctcttggtggttccttgaggGctttgatgatcagggcagag	15	7	2	4	rs149234502	alternate_allele	TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	RPL12-90	NM_000976	exon4	c.C251A	p.A84D	TTGAGGGCTTTGA	.	67	4	56	0	G|1.000;C|0.000	2312	2309	1	2	0	T	130211601	G	T	130211601	3	4	13	1	0	0	0	0	1	0	0	0	13593	1203	42	3	262	3	RPL12	9	130211601	Missense_Mutation	SNP	G	TCGA-OR-A5JF-01A-11D-A29I-10	9736396	130211601	11001830	66	2931										
CEL	1056	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr9	135947102	135947102	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0705128205128205	11	0.514860817004901	1.54671441918405	2.21097735156091	1.13685005665366	1	1	0	tgaggctgcccctgtgccccCcacagatgactccaaggaag	11	15	0	3	novel		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	CEL-91	NM_001807	exon11	c.C2222T	p.P741L	TGCCCCCCACAGA	.	107	42	93	0	.	0	0	0	0	0	T	135947102	C	T	135947102	3	4	13	1	0	0	0	0	1	0	0	0	3215	623	22	3	2264	3	CEL	9	135947102	Missense_Mutation	SNP	C	TCGA-OR-A5JF-01A-11D-A29I-10	5735501	135947102	5266329	67	2932										
ABO	28	bcgsc.ca	37	chr9	136131415	136131415	+	RNA	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0705128205128205	11	0.514860817004901	1.54671441918405	2.21097735156091	1.13685005665366	1	1	0	ccggctgcttccgtagaagcCggggtgcagggtgccgaaca	16	12	0	1	rs8176743	byfrequency	TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	ABO-90	.	.	.	.	AGAAGCCGGGGTG	.	91	5	68	0	C|0.861;T|0.139	7	7	0	0	0	T	136131415	C	T	136131415	1	4	13	0	1	0	0	0	0	0	0	0	97	652	23	1		1	ABO	9	136131415	RNA	SNP	C	TCGA-OR-A5JF-01A-11D-A29I-10	184313	136131415	5082016	68	2933										
RXRA	6256	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr9	137325961	137325961	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0705128205128205	11	0.514860817004901	1.54671441918405	2.21097735156091	1.13685005665366	1	1	0	ctttcagactccaaggggctCtcgaacccggccgaggtgga	13	13	2	1	novel		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	RXRA-188	NM_002957	exon9	c.C1149G	p.L383L	GGGGCTCTCGAAC	.	74	24	71	0	.	1	0	1	0	0	G	137325961	C	G	137325961	2	3	13	1	0	0	0	0	0	0	0	1	13798	900	32	3		3	RXRA	9	137325961	Silent	SNP	C	TCGA-OR-A5JF-01A-11D-A29I-10	1194546	137325961	3887470	69	2934										
GPSM1	26086	hgsc.bcm.edu	37	chr9	139252666	139252666	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0705128205128205	11	0.514860817004901	1.54671441918405	2.21097735156091	1.13685005665366	1	1	0	cagcagtgccagcctggtgcGagctaaggccctgtgcccac	13	15	0	0	rs200980257		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	GPSM1-90	NM_001145638	exon14	c.G2022A	p.A674A	TGGTGCGAGCTAA	.	9	4	0	0	G|0.998;A|0.002	6	3	3	0	0	A	139252666	G	A	139252666	2	1	13	1	0	0	0	0	0	0	0	1	6755	1045	37	1		1	GPSM1	9	139252666	Silent	SNP	G	TCGA-OR-A5JF-01A-11D-A29I-10	1926705	139252666	1960765	70	2935										
TRAF2	7186	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr9	139818401	139818401	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0705128205128205	11	0.514860817004901	1.54671441918405	2.21097735156091	1.13685005665366	1	1	0	cacctgtccctcttctttgtGgtgatgaagggcccgaatga	11	11	2	3	novel		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	TRAF2-660	NM_021138	exon10	c.G1236C	p.V412V	CTTTGTGGTGATG	.	187	79	138	0	.	16	11	5	0	0	C	139818401	G	C	139818401	2	2	13	1	0	0	0	0	0	0	0	1	16476	1335	47	3		3	TRAF2	9	139818401	Silent	SNP	G	TCGA-OR-A5JF-01A-11D-A29I-10	565735	139818401	1395030	71	2936										
ANK3	288	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr10	61819102	61819102	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0705128205128205	11	0.514860817004901	1.54671441918405	2.21097735156091	1.13685005665366	1	1	0	tttgaaacagccatacctgtCatccagtcgatctagtaacc	6	12	2	1	novel		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	ANK3-107	NM_020987	exon41	c.G12682A	p.D4228N	ACCTGTCATCCAG	.	71	34	88	0	.	0	0	0	0	0	T	61819102	C	T	61819102	3	4	13	1	0	0	0	0	1	0	0	0	622	826	29	3	463	3	ANK3	10	61819102	Missense_Mutation	SNP	C	TCGA-OR-A5JF-01A-11D-A29I-10		61819102	73715645	72	2937										
DDX50	79009	broad.mit.edu	37	chr10	70666540	70666540	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0705128205128205	11	0.514860817004901	1.54671441918405	2.21097735156091	1.13685005665366	1	1	0	aagagaaaatggtgttacagAtgacctggatgctcccaagg	12	7	0	3	novel		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	DDX50-91	NM_024045	exon2	c.A161G	p.D54G	TTACAGATGACCT	.	355	7	338	1	.	11	11	0	0	0	G	70666540	A	G	70666540	3	3	13	1	0	0	0	0	1	0	0	0	4374	333	12	4	167	4	DDX50	10	70666540	Missense_Mutation	SNP	A	TCGA-OR-A5JF-01A-11D-A29I-10	8847438	70666540	64868207	73	2938										
ADAMTS14	140766	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr10	72489935	72489935	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0705128205128205	11	0.514860817004901	1.54671441918405	2.21097735156091	1.13685005665366	1	1	0	tgggcacactcccagcagcgCcaggaccccagccacgctga	11	18	0	1	novel		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	ADAMTS14-232	NM_080722	exon6	c.C1032G	p.R344R	GCAGCGCCAGGAC	.	141	75	103	0	.	0	0	0	0	0	G	72489935	C	G	72489935	2	3	13	1	0	0	0	0	0	0	0	1	259	726	26	3		3	ADAMTS14	10	72489935	Silent	SNP	C	TCGA-OR-A5JF-01A-11D-A29I-10	1823395	72489935	63044812	74	2939										
NFKB2	4791	hgsc.bcm.edu	37	chr10	104159196	104159196	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0705128205128205	11	0.514860817004901	1.54671441918405	2.21097735156091	1.13685005665366	1	1	0	ggggaggaagccgcggagccAagcgccccctccaggacccc	15	17	0	0	rs4919633	byfrequency	TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	NFKB2-522	NM_001077494	exon13	c.A1269G	p.P423P	GGAGCCAAGCGCC	.	13	13	0	0	A|0.009;G|0.991	1	0	1	0	0	G	104159196	A	G	104159196	2	3	13	1	0	0	0	0	0	0	0	1	10405	117	5	4		4	NFKB2	10	104159196	Silent	SNP	A	TCGA-OR-A5JF-01A-11D-A29I-10	31669261	104159196	31375551	75	2940										
SMC3	9126	broad.mit.edu	37	chr10	112356159	112356159	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0705128205128205	11	0.514860817004901	1.54671441918405	2.21097735156091	1.13685005665366	1	1	0	atatgttttgtttataggtgAccaagtcagccatcggggtg	12	6	1	1	novel		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	SMC3-92	NM_005445	exon19	c.A1967G	p.D656G	TAGGTGACCAAGT	.	32	5	39	0	.	0	0	0	0	0	G	112356159	A	G	112356159	3	3	13	1	0	0	0	0	1	0	0	0	14819	275	10	4	2041	4	SMC3	10	112356159	Missense_Mutation	SNP	A	TCGA-OR-A5JF-01A-11D-A29I-10	8196963	112356159	23178588	76	2941										
KNDC1	85442	hgsc.bcm.edu	37	chr10	135012429	135012429	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0705128205128205	11	0.514860817004901	1.54671441918405	2.21097735156091	1.13685005665366	1	1	0	tgagccgatcccacctggagTtgcttccgggggcctcaggc	14	14	1	1	rs3008390		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	KNDC1-229	NM_152643	exon14	c.T2417A	p.V806D	CTGGAGTTGCTTC	.	5	4	0	0	T|0.406;A|0.594	0	0	0	0	0	A	135012429	T	A	135012429	3	1	13	1	0	0	0	0	1	0	0	0	8447	1725	60	5	2471	5	KNDC1	10	135012429	Missense_Mutation	SNP	T	TCGA-OR-A5JF-01A-11D-A29I-10	22656270	135012429	522318	77	2942										
SYT8	90019	hgsc.bcm.edu	37	chr11	1858572	1858572	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0705128205128205	11	0.514860817004901	1.54671441918405	2.21097735156091	1.13685005665366	1	1	0	cccggcggcccattgcccagCggcaccccctgcggccagcc	12	22	0	0	rs2292474	byfrequency	TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	SYT8-91	NM_138567	exon9	c.C1117T	p.R373W	GCCCAGCGGCACC	.	18	14	2	0	C|0.602;T|0.398	0	0	0	0	0	T	1858572	C	T	1858572	3	4	13	1	0	0	0	0	1	0	0	0	15517	759	27	1	1151	1	SYT8	11	1858572	Missense_Mutation	SNP	C	TCGA-OR-A5JF-01A-11D-A29I-10		1858572	133147944	78	2943										
SERPING1	710	ucsc.edu;bcgsc.ca	37	chr11	57373627	57373627	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0705128205128205	11	0.514860817004901	1.54671441918405	2.21097735156091	1.13685005665366	1	1	0	caacaacaagatcagccggcTgctagacagtctgccctccg	9	15	2	2	novel		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	SERPING1-650	NM_001032295	exon4	c.T830G	p.L277R	GCCGGCTGCTAGA	.	192	141	220	3	.	80	78	2	0	0	G	57373627	T	G	57373627	3	3	13	1	0	0	0	0	1	0	0	0	14151	1580	55	5	844	5	SERPING1	11	57373627	Missense_Mutation	SNP	T	TCGA-OR-A5JF-01A-11D-A29I-10	55515055	57373627	77632889	79	2944										
BEST1	7439	broad.mit.edu	37	chr11	61730553	61730553	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0705128205128205	11	0.514860817004901	1.54671441918405	2.21097735156091	1.13685005665366	1	1	0	cagggatcctagggaagtgtTcgggaccttttctcacttca	11	10	2	0	rs17185413	byfrequency	TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	BEST1-90	NM_001139443	exon9	c.T1747C	p.S583P	AAGTGTTCGGGAC	.	145	5	183	0	T|0.906;C|0.094	0	0	0	0	0	C	61730553	T	C	61730553	3	2	13	1	0	0	0	0	1	0	0	0	1405	1783	62	4	1961	4	BEST1	11	61730553	Missense_Mutation	SNP	T	TCGA-OR-A5JF-01A-11D-A29I-10	4356926	61730553	73275963	80	2945										
BSCL2	26580	broad.mit.edu;bcgsc.ca	37	chr11	62472840	62472840	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0705128205128205	11	0.514860817004901	1.54671441918405	2.21097735156091	1.13685005665366	1	1	0	ggaatagtagaaggagccatAgaggaagacagacacccaga	13	7	0	5	novel		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	BSCL2-514	NM_001122955	exon2	c.T337C	p.Y113H	AGCCATAGAGGAA	.	238	14	320	1	.	61	60	1	0	0	G	62472840	A	G	62472840	3	3	13	1	0	0	0	0	1	0	0	0	1530	420	15	4	1091	4	BSCL2	11	62472840	Missense_Mutation	SNP	A	TCGA-OR-A5JF-01A-11D-A29I-10	742287	62472840	72533676	81	2946										
PITPNM1	9600	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr11	67262351	67262351	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0705128205128205	11	0.514860817004901	1.54671441918405	2.21097735156091	1.13685005665366	1	1	0	gcgtgcgttttcgctgccacTtctccctggggaaggccggg	15	13	1	0	novel		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	PITPNM1-227	NM_004910	exon18	c.A2708G	p.K903R	TGCCACTTCTCCC	.	93	6	98	0	.	3	3	0	0	0	C	67262351	T	C	67262351	3	2	13	1	0	0	0	0	1	0	0	0	11979	1609	56	4	1054	4	PITPNM1	11	67262351	Missense_Mutation	SNP	T	TCGA-OR-A5JF-01A-11D-A29I-10	4789511	67262351	67744165	82	2947										
FGF4	2249	hgsc.bcm.edu	37	chr11	69589556	69589556	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0705128205128205	11	0.514860817004901	1.54671441918405	2.21097735156091	1.13685005665366	1	1	0	ccgccgatgcggccgtcgggGagcgcctggaggtggaagcc	19	13	0	0	rs11600280	byfrequency	TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	FGF4-1270	NM_002007	exon1	c.C297T	p.L99L	GTCGGGGAGCGCC	.	9	9	0	0	G|0.967;A|0.033	0	0	0	0	0	A	69589556	G	A	69589556	2	1	13	1	0	0	0	0	0	0	0	1	5873	1161	41	3		3	FGF4	11	69589556	Silent	SNP	G	TCGA-OR-A5JF-01A-11D-A29I-10	2327205	69589556	65416960	83	2948										
H2AFX	3014	broad.mit.edu	37	chr11	118965789	118965789	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0705128205128205	11	0.514860817004901	1.54671441918405	2.21097735156091	1.13685005665366	1	1	0	gatgttgggcaggacgcctcCctgggcgatcgtcacgccgc	15	14	1	0	novel		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	H2AFX-651	NM_002105	exon1	c.G316A	p.G106R	CGCCTCCCTGGGC	.	213	6	107	0	.	29	29	0	0	0	T	118965789	C	T	118965789	3	4	13	1	0	0	0	0	1	0	0	0	6949	632	22	3	119	3	H2AFX	11	118965789	Missense_Mutation	SNP	C	TCGA-OR-A5JF-01A-11D-A29I-10	49376233	118965789	16040727	84	2949										
PARP11	57097	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr12	3921573	3921573	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0705128205128205	11	0.514860817004901	1.54671441918405	2.21097735156091	1.13685005665366	1	1	0	gtcatctttgcagaaacgacTggaataagcagcatctctag	9	9	3	1	novel		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	PARP11-523	NM_020367	exon8	c.A733G	p.S245G	AACGACTGGAATA	.	82	40	64	0	.	16	9	7	0	0	C	3921573	T	C	3921573	3	2	13	1	0	0	0	0	1	0	0	0	11485	1580	55	4	287	4	PARP11	12	3921573	Missense_Mutation	SNP	T	TCGA-OR-A5JF-01A-11D-A29I-10		3921573	129930322	85	2950										
ATN1	1822	ucsc.edu	37	chr12	7045906	7045906	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0705128205128205	11	0.514860817004901	1.54671441918405	2.21097735156091	1.13685005665366	1	1	0	cagcaacagcagcagcagcaGcagcagcagcagcagcagca	12	14	0	0	novel		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	ATN1-139	NM_001007026	exon5	c.G1476A	p.Q492Q	GCAGCAGCAGCAG	.	153	14	107	0	.	373	372	1	0	0	A	7045906	G	A	7045906	2	1	13	1	0	0	0	0	0	0	0	1	1112	962	34	3		3	ATN1	12	7045906	Silent	SNP	G	TCGA-OR-A5JF-01A-11D-A29I-10	3124333	7045906	126805989	86	2951			1	8		2	2	19	G		9.070324e-05
ATN1	1822	hgsc.bcm.edu	37	chr12	7045924	7045924	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0705128205128205	11	0.514860817004901	1.54671441918405	2.21097735156091	1.13685005665366	1	1	0	cagcagcagcagcagcagcaGcagcagcagcagcatcacgg	13	14	1	0	rs199988271	alternate_allele	TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	ATN1-139	NM_001007026	exon5	c.G1494T	p.Q498H	GCAGCAGCAGCAG	.	141	8	102	0	G|0.999;A|0.001	232	232	0	0	0	T	7045924	G	T	7045924	3	4	13	1	0	0	0	0	1	0	0	0	1112	962	34	3	1508	3	ATN1	12	7045924	Missense_Mutation	SNP	G	TCGA-OR-A5JF-01A-11D-A29I-10	18	7045924	126805971	87	2952			1	8		2	2	19	G		9.070324e-05
CLEC1A	51267	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	10223960	10223960	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0705128205128205	11	0.514860817004901	1.54671441918405	2.21097735156091	1.13685005665366	1	1	0	cttcgcctaatgtttcagggGggacatggaggctctctggc	14	10	2	0	novel		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	CLEC1A-91	NM_016511	exon6	c.C815A	p.P272H	TCAGGGGGGACAT	.	157	69	94	0	.	3	3	0	0	0	T	10223960	G	T	10223960	3	4	13	1	0	0	0	0	1	0	0	0	3511	1232	43	3	31	3	CLEC1A	12	10223960	Missense_Mutation	SNP	G	TCGA-OR-A5JF-01A-11D-A29I-10	3178036	10223960	123627935	88	2953										
KIAA1467	57613	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	13232844	13232844	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0705128205128205	11	0.514860817004901	1.54671441918405	2.21097735156091	1.13685005665366	1	1	0	ctacggtgggcactaatggaGggccagatggctcagctaca	14	10	1	1	novel		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	KIAA1467-92	NM_020853	exon12	c.G1764A	p.E588E	AATGGAGGGCCAG	.	251	122	177	0	.	6	2	4	0	0	A	13232844	G	A	13232844	2	1	13	1	0	0	0	0	0	0	0	1	8256	991	35	3		3	KIAA1467	12	13232844	Silent	SNP	G	TCGA-OR-A5JF-01A-11D-A29I-10	3008884	13232844	120619051	89	2954										
HDAC7	51564	ucsc.edu;bcgsc.ca	37	chr12	48181875	48181875	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0705128205128205	11	0.514860817004901	1.54671441918405	2.21097735156091	1.13685005665366	1	1	0	gaagttgccgtcgtcatggcGatgcagggagatgtagagca	16	7	1	2	novel		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	HDAC7-289	NM_015401	exon20	c.C2308T	p.R770C	CATGGCGATGCAG	.	525	198	357	3	.	53	25	28	0	0	A	48181875	G	A	48181875	3	1	13	1	0	0	0	0	1	0	0	0	7033	1058	37	1	695	1	HDAC7	12	48181875	Missense_Mutation	SNP	G	TCGA-OR-A5JF-01A-11D-A29I-10	34949031	48181875	85670020	90	2955										
AMDHD1	144193	hgsc.bcm.edu	37	chr12	96337183	96337183	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0705128205128205	11	0.514860817004901	1.54671441918405	2.21097735156091	1.13685005665366	1	1	0	cggcgcgaggcgacatggcaAgcggccacagcctcctgctg	15	15	0	0	rs7955450	byfrequency	TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	AMDHD1-90	NM_152435	exon1	c.A7G	p.S3G	ATGGCAAGCGGCC	.	14	14	0	0	A|0.273;G|0.727	2	0	2	0	0	G	96337183	A	G	96337183	3	3	13	1	0	0	0	0	1	0	0	0	567	72	3	4	9	4	AMDHD1	12	96337183	Missense_Mutation	SNP	A	TCGA-OR-A5JF-01A-11D-A29I-10	48155308	96337183	37514712	91	2956										
AMDHD1	144193	hgsc.bcm.edu	37	chr12	96337225	96337225	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0705128205128205	11	0.514860817004901	1.54671441918405	2.21097735156091	1.13685005665366	1	1	0	agaacgcgcagcaagtggtgCtggtgtgcgcccgcggcgag	18	11	0	1	rs1436121	byfrequency	TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	AMDHD1-90	NM_152435	exon1	c.C49T	p.L17L	GTGGTGCTGGTGT	.	28	28	0	0	C|0.752;T|0.248	2	0	2	0	0	T	96337225	C	T	96337225	2	4	13	1	0	0	0	0	0	0	0	1	567	796	28	3		3	AMDHD1	12	96337225	Silent	SNP	C	TCGA-OR-A5JF-01A-11D-A29I-10	42	96337225	37514670	92	2957										
TRPV4	59341	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	110226237	110226237	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0705128205128205	11	0.514860817004901	1.54671441918405	2.21097735156091	1.13685005665366	1	1	0	gatgtgcttgctctccttggAgacctggcccactgtctcgc	11	14	2	1	novel		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	TRPV4-94	NM_021625	exon13	c.T2176C	p.S726P	CCTTGGAGACCTG	.	201	44	150	0	.	1	1	0	0	0	G	110226237	A	G	110226237	3	3	13	1	0	0	0	0	1	0	0	0	16636	304	11	4	455	4	TRPV4	12	110226237	Missense_Mutation	SNP	A	TCGA-OR-A5JF-01A-11D-A29I-10	13889012	110226237	23625658	93	2958										
RAD9B	144715	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	110960124	110960124	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0705128205128205	11	0.514860817004901	1.54671441918405	2.21097735156091	1.13685005665366	1	1	0	tggaaaactgtggcagccctGcaatgaaaagagtggatgga	14	6	0	2	novel		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	RAD9B-228	NM_152442	exon10	c.G1033C	p.A345P	AGCCCTGCAATGA	.	384	43	278	0	.	1	0	1	0	0	C	110960124	G	C	110960124	3	2	13	1	0	0	0	0	1	0	0	0	13031	1319	46	3	1071	3	RAD9B	12	110960124	Missense_Mutation	SNP	G	TCGA-OR-A5JF-01A-11D-A29I-10	733887	110960124	22891771	94	2959										
TPTE2	93492	bcgsc.ca	37	chr13	20056679	20056679	+	Missense_Mutation	SNP	T	T	G													0.0705128205128205	11	0.514860817004901	1.54671441918405	2.21097735156091	1.13685005665366	1	1	0	cttcaaacttggaaagtcgtTctaacatactttagccacca					rs200244531		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	TPTE2-92	NM_199254	exon5	c.A128C	p.E43A	AGTCGTTCTAACA	.	304	9	363	2	.	0	0	0	0	0	G	20056679	T	G	20056679	3	3	13	1	0	0	0	0	1	0	0	0	16469	1783	62	5	1508	5	TPTE2	13	20056679	Missense_Mutation	SNP	T	TCGA-OR-A5JF-01A-11D-A29I-10		20056679	95113199	95	2960	23	2								
TPTE2	93492	bcgsc.ca	37	chr13	20056686	20056686	+	Missense_Mutation	SNP	T	T	C													0.0705128205128205	11	0.514860817004901	1.54671441918405	2.21097735156091	1.13685005665366	1	1	0	cttggaaagtcgttctaacaTactttagccaccaaaaaaaa					rs201542496		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	TPTE2-92	NM_199254	exon5	c.A121G	p.M41V	CTAACATACTTTA	.	286	9	350	3	.	0	0	0	0	0	C	20056686	T	C	20056686	3	2	13	1	0	0	0	0	1	0	0	0	16469	1420	49	4	1515	4	TPTE2	13	20056686	Missense_Mutation	SNP	T	TCGA-OR-A5JF-01A-11D-A29I-10	7	20056686	95113192	96	2961	23	2								
RNF17	56163	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr13	25341412	25341412	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0705128205128205	11	0.514860817004901	1.54671441918405	2.21097735156091	1.13685005665366	1	1	0	taagaatttcatcaataggtCaccattgtgaacttcaatgt	6	7	4	2	novel		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	RNF17-228	NM_001184993	exon2	c.C133T	p.H45Y	ATAGGTCACCATT	.	81	64	101	0	.	0	0	0	0	0	T	25341412	C	T	25341412	3	4	13	1	0	0	0	0	1	0	0	0	13496	826	29	3	139	3	RNF17	13	25341412	Missense_Mutation	SNP	C	TCGA-OR-A5JF-01A-11D-A29I-10	5284726	25341412	89828466	97	2962										
MTUS2	23281	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr13	29599148	29599148	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0705128205128205	11	0.514860817004901	1.54671441918405	2.21097735156091	1.13685005665366	1	1	0	ttagactttcttcaaccattCagagggaactcaatgaagag	8	8	4	4	novel		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	MTUS2-218	NM_001033602	exon1	c.C343A	p.Q115K	ACCATTCAGAGGG	.	64	19	81	0	.	0	0	0	0	0	A	29599148	C	A	29599148	3	1	13	1	0	0	0	0	1	0	0	0	9994	827	29	3	345	3	MTUS2	13	29599148	Missense_Mutation	SNP	C	TCGA-OR-A5JF-01A-11D-A29I-10	4257736	29599148	85570730	98	2963										
STARD13	90627	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr13	33716447	33716447	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0705128205128205	11	0.514860817004901	1.54671441918405	2.21097735156091	1.13685005665366	1	1	0	attaaggtgtgggcacctacCtttttcctttggaagttcac	9	9	1	0	novel		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	STARD13-94	NM_178006	exon4	c.G387C	p.K129N	ACCTACCTTTTTC	.	56	40	61	0	.	0	0	0	0	0	G	33716447	C	G	33716447	3	3	13	1	0	0	0	0	1	0	0	0	15293	695	24	3	2998	3	STARD13	13	33716447	Missense_Mutation	SNP	C	TCGA-OR-A5JF-01A-11D-A29I-10	4117299	33716447	81453431	99	2964										
LIG4	3981	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr13	108862298	108862298	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0705128205128205	11	0.514860817004901	1.54671441918405	2.21097735156091	1.13685005665366	1	1	0	acccttcacctcttttgtctGgcttgtagatggatagaggt	10	9	3	2	novel		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	LIG4-659	NM_206937	exon3	c.C1319G	p.P440R	TTGTCTGGCTTGT	.	60	42	52	0	.	10	0	10	0	0	C	108862298	G	C	108862298	3	2	13	1	0	0	0	0	1	0	0	0	8806	1348	47	3	1420	3	LIG4	13	108862298	Missense_Mutation	SNP	G	TCGA-OR-A5JF-01A-11D-A29I-10	75145851	108862298	6307580	100	2965										
SAMD4A	23034	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	55203812	55203812	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0705128205128205	11	0.514860817004901	1.54671441918405	2.21097735156091	1.13685005665366	1	1	0	accccacccatgaatgtgccAaaccagcctctaggacatgg	8	15	1	1	novel		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	SAMD4A-90	NM_015589	exon3	c.A786T	p.P262P	TGTGCCAAACCAG	.	67	49	73	1	.	0	0	0	0	0	T	55203812	A	T	55203812	2	4	13	1	0	0	0	0	0	0	0	1	13856	117	5	5		5	SAMD4A	14	55203812	Silent	SNP	A	TCGA-OR-A5JF-01A-11D-A29I-10		55203812	52145728	101	2966										
ZFYVE26	23503	broad.mit.edu	37	chr14	68229079	68229079	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0705128205128205	11	0.514860817004901	1.54671441918405	2.21097735156091	1.13685005665366	1	1	0	ccggctttgaggcaggccatGccccaagcatgccacgcccc	11	18	0	1	novel		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	ZFYVE26-162	NM_015346	exon34	c.C6210A	p.G2070G	GGCCATGCCCCAA	.	106	4	141	0	.	5	5	0	0	0	T	68229079	G	T	68229079	2	4	13	1	0	0	0	0	0	0	0	1	17705	1306	46	3		3	ZFYVE26	14	68229079	Silent	SNP	G	TCGA-OR-A5JF-01A-11D-A29I-10	13025267	68229079	39120461	102	2967										
KCNK10	54207	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr14	88652422	88652422	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0705128205128205	11	0.514860817004901	1.54671441918405	2.21097735156091	1.13685005665366	1	1	0	ttatcgtggatctccacgctGagccttcgccgtgtctcccg	10	15	2	1	novel		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	KCNK10-95	NM_138318	exon7	c.C1089A	p.L363L	CACGCTGAGCCTT	.	155	110	133	1	.	0	0	0	0	0	T	88652422	G	T	88652422	2	4	13	1	0	0	0	0	0	0	0	1	8080	1277	45	3		3	KCNK10	14	88652422	Silent	SNP	G	TCGA-OR-A5JF-01A-11D-A29I-10	20423343	88652422	18697118	103	2968										
SERPINA9	327657	bcgsc.ca	37	chr14	94933709	94933709	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0705128205128205	11	0.514860817004901	1.54671441918405	2.21097735156091	1.13685005665366	1	1	0	tattcagggtgaaagggcttCtcccacttggctagcacaaa	10	10	2	1	rs6575433	byfrequency	TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	SERPINA9-226	NM_175739	exon3	c.G693A	p.E231E	GGGCTTCTCCCAC	.	70	5	63	0	C|0.636;T|0.364	0	0	0	0	0	T	94933709	C	T	94933709	2	4	13	1	0	0	0	0	0	0	0	1	14130	912	32	3		3	SERPINA9	14	94933709	Silent	SNP	C	TCGA-OR-A5JF-01A-11D-A29I-10	6281287	94933709	12415831	104	2969										
CEP152	22995	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	49048340	49048340	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.0705128205128205	11	0.514860817004901	1.54671441918405	2.21097735156091	1.13685005665366	1	1	0	tactgatagatttccagttgGatccgcttggcttcctgcat	9	10	0	2	novel		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	CEP152-70	NM_014985	exon20	c.C3105G	p.I1035M	CAGTTGGATCCGC	.	73	8	84	0	.	0	0	0	0	0	C	49048340	G	C	49048340	3	2	13	1	0	0	0	0	1	0	0	0	3254	1164	41	3	1887	3	CEP152	15	49048340	Missense_Mutation	SNP	G	TCGA-OR-A5JF-01A-11D-A29I-10		49048340	53483052	105	2970										
VPS13C	54832	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	62170946	62170946	+	Splice_Site	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0705128205128205	11	0.514860817004901	1.54671441918405	2.21097735156091	1.13685005665366	1	1	0	aaagacaaactcaaatgcaaCtaaaagaaaaataatgttca	4	6	2	2	novel		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	VPS13C-92	NM_020821	exon75	c.10003-1G>T	.	ATGCAACTAAAAG	.	20	7	42	0	.	1	0	1	0	0	A	62170946	C	A	62170946	5	1	13	1	0	0	0	0	0	0	1	0	17229	579	20	3	1335	3	VPS13C	15	62170946	Splice_Site	SNP	C	TCGA-OR-A5JF-01A-11D-A29I-10	13122606	62170946	40360446	106	2971										
RPS2	6187	hgsc.bcm.edu	37	chr16	2014528	2014528	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0705128205128205	11	0.514860817004901	1.54671441918405	2.21097735156091	1.13685005665366	1	1	0	cggccgcgaccccggccccgGatgccactgccgaaacctcc	11	21	0	0	rs17135712	byfrequency	TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	RPS2-90	NM_002952	exon2	c.C99T	p.I33I	GCCCCGGATGCCA	.	5	4	0	0	G|0.933;A|0.067	152	49	103	0	0	A	2014528	G	A	2014528	2	1	13	1	0	0	0	0	0	0	0	1	13666	1164	41	3		3	RPS2	16	2014528	Silent	SNP	G	TCGA-OR-A5JF-01A-11D-A29I-10		2014528	88340225	107	2972										
PRSS27	83886	broad.mit.edu	37	chr16	2762757	2762757	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0705128205128205	11	0.514860817004901	1.54671441918405	2.21097735156091	1.13685005665366	1	1	0	agccctcaccccagctgatcAcccccgcctgcagccacgac	7	22	2	1	novel		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	PRSS27-91	NM_031948	exon6	c.T737G	p.V246G	CTGATCACCCCCG	.	136	28	52	9	.	2	2	0	0	0	C	2762757	A	C	2762757	3	2	13	1	0	0	0	0	1	0	0	0	12653	159	6	5	139	5	PRSS27	16	2762757	Missense_Mutation	SNP	A	TCGA-OR-A5JF-01A-11D-A29I-10	748229	2762757	87591996	108	2973										
MEFV	4210	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr16	3293669	3293669	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0705128205128205	11	0.514860817004901	1.54671441918405	2.21097735156091	1.13685005665366	1	1	0	aagatgaggttggggtaagcGgtttctgcatccagaatcac	13	7	2	3	rs104895213	alternate_allele	TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	MEFV-228	NM_000243	exon10	c.C1818G	p.T606T	GTAAGCGGTTTCT	.	117	51	89	0	.	0	0	0	0	0	C	3293669	G	C	3293669	2	2	13	1	0	0	0	0	0	0	0	1	9487	1103	39	2		2	MEFV	16	3293669	Silent	SNP	G	TCGA-OR-A5JF-01A-11D-A29I-10	530912	3293669	87061084	109	2974										
MEFV	4210	hgsc.bcm.edu	37	chr16	3304573	3304573	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0705128205128205	11	0.514860817004901	1.54671441918405	2.21097735156091	1.13685005665366	1	1	0	tgcgcgtccaggccctccgaGgccttctctctgcgtttgct	11	16	2	0	rs224223	byfrequency	TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	MEFV-228	NM_000243	exon2	c.C495A	p.A165A	CTCCGAGGCCTTC	.	15	9	1	0	G|0.570;T|0.430	0	0	0	0	0	T	3304573	G	T	3304573	2	4	13	1	0	0	0	0	0	0	0	1	9487	987	35	3		3	MEFV	16	3304573	Silent	SNP	G	TCGA-OR-A5JF-01A-11D-A29I-10	10904	3304573	87050180	110	2975										
TAOK2	9344	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr16	30002486	30002486	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.0705128205128205	11	0.514860817004901	1.54671441918405	2.21097735156091	1.13685005665366	1	1	0	aagcatgaggctgggcttctCcagcatggctctggggggca	16	10	2	1	novel		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	TAOK2-521	NM_004783	exon19	c.C2747G	p.S916C	GCTTCTCCAGCAT	.	129	47	47	0	.	59	23	36	0	0	G	30002486	C	G	30002486	3	3	13	1	0	0	0	0	1	0	0	0	15585	855	30	3	4293	3	TAOK2	16	30002486	Missense_Mutation	SNP	C	TCGA-OR-A5JF-01A-11D-A29I-10	26697913	30002486	60352267	111	2976										
RPGRIP1L	23322	hgsc.bcm.edu;broad.mit.edu	37	chr16	53692791	53692791	+	Splice_Site	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0705128205128205	11	0.514860817004901	1.54671441918405	2.21097735156091	1.13685005665366	1	1	0	aacgagtttttcattttgatCttaaaaataaagtccacaca	4	7	2	1	novel		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	RPGRIP1L-91	NM_001127897	exon12	c.1244-1G>A	.	TTTGATCTTAAAA	.	56	5	24	0	.	0	0	0	0	0	T	53692791	C	T	53692791	5	4	13	1	0	0	0	0	0	0	1	0	13585	927	32	3	2772	3	RPGRIP1L	16	53692791	Splice_Site	SNP	C	TCGA-OR-A5JF-01A-11D-A29I-10	23690305	53692791	36661962	112	2977										
NLRC5	84166	bcgsc.ca	37	chr16	57093436	57093436	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0705128205128205	11	0.514860817004901	1.54671441918405	2.21097735156091	1.13685005665366	1	1	0	agagaggaccaggctgggaaGacactcaggtaatccctgca	13	10	1	2	rs117950337	byfrequency	TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	NLRC5-159	NM_032206	exon29	c.G3978T	p.K1326N	TGGGAAGACACTC	.	176	6	128	0	G|0.982;T|0.018	0	0	0	0	0	T	57093436	G	T	57093436	3	4	13	1	0	0	0	0	1	0	0	0	10499	933	33	3	4088	3	NLRC5	16	57093436	Missense_Mutation	SNP	G	TCGA-OR-A5JF-01A-11D-A29I-10	3400645	57093436	33261317	113	2978										
ATP2C2	9914	broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr16	84402268	84402268	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0705128205128205	11	0.514860817004901	1.54671441918405	2.21097735156091	1.13685005665366	1	1	0	cctgaagaaactcggcttctCgggcgggggccgccagtacc	14	14	1	2	novel		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	ATP2C2-91	NM_014861	exon1	c.C47T	p.S16L	GCTTCTCGGGCGG	.	218	36	81	1	.	0	0	0	0	0	T	84402268	C	T	84402268	3	4	13	1	0	0	0	0	1	0	0	0	1145	893	31	1	49	1	ATP2C2	16	84402268	Missense_Mutation	SNP	C	TCGA-OR-A5JF-01A-11D-A29I-10	27308832	84402268	5952485	114	2979										
COX4I1	1327	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	85838589	85838589	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0705128205128205	11	0.514860817004901	1.54671441918405	2.21097735156091	1.13685005665366	1	1	0	tcgctcccagcttatatggaTcggcgtgaccaccccttgcc	9	16	0	1	novel		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	COX4I1-226	NM_001861	exon3	c.T120G	p.D40E	TATGGATCGGCGT	.	232	98	184	1	.	1204	587	616	1	0	G	85838589	T	G	85838589	3	3	13	1	0	0	0	0	1	0	0	0	3775	1432	50	5	126	5	COX4I1	16	85838589	Missense_Mutation	SNP	T	TCGA-OR-A5JF-01A-11D-A29I-10	1436321	85838589	4516164	115	2980										
CBFA2T3	863	ucsc.edu;bcgsc.ca	37	chr16	88968048	88968048	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0705128205128205	11	0.514860817004901	1.54671441918405	2.21097735156091	1.13685005665366	1	1	0	ggcatcgctgaggccttagcTttcctgtccactggggctgc	13	13	0	1	rs76033980	byfrequency	TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	CBFA2T3-722	NM_005187	exon2	c.A168G	p.K56K	CTTAGCTTTCCTG	.	31	7	14	0	T|0.958;C|0.042	0	0	0	0	0	C	88968048	T	C	88968048	2	2	13	1	0	0	0	0	0	0	0	1	2704	1606	56	4		4	CBFA2T3	16	88968048	Silent	SNP	T	TCGA-OR-A5JF-01A-11D-A29I-10	3129459	88968048	1386705	116	2981										
C17orf97	400566	hgsc.bcm.edu	37	chr17	260182	260182	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0705128205128205	11	0.514860817004901	1.54671441918405	2.21097735156091	1.13685005665366	1	1	0	tccgcgctgagagtcgccgaTtagtcggcatcgggcctcgg	15	13	0	1	rs7502594		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	C17orf97-91	NM_001013672	exon1	c.T49C	p.L17L	CGCCGATTAGTCG	.	17	17	0	0	T|0.657;C|0.343	0	0	0	0	0	C	260182	T	C	260182	2	2	13	1	0	0	0	0	0	0	0	1	1898	1490	52	4		4	C17orf97	17	260182	Silent	SNP	T	TCGA-OR-A5JF-01A-11D-A29I-10		260182	80935028	117	2982										
GUCY2D	3000	hgsc.bcm.edu	37	chr17	7906529	7906529	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0705128205128205	11	0.514860817004901	1.54671441918405	2.21097735156091	1.13685005665366	1	1	0	cgccctctccgccgtgttcaCggtgggggtcctgggcccct	14	17	2	0	rs201414567		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	GUCY2D-319	NM_000180	exon2	c.C164T	p.T55M	TGTTCACGGTGGG	.	12	10	2	0	C|0.998;T|0.002	0	0	0	0	0	T	7906529	C	T	7906529	3	4	13	1	0	0	0	0	1	0	0	0	6918	536	19	1	166	1	GUCY2D	17	7906529	Missense_Mutation	SNP	C	TCGA-OR-A5JF-01A-11D-A29I-10	7646347	7906529	73288681	118	2983										
SUPT6H	6830	broad.mit.edu	37	chr17	27028024	27028024	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0705128205128205	11	0.514860817004901	1.54671441918405	2.21097735156091	1.13685005665366	1	1	0	acccctagctactcctacacGaccccaagccagcccatcac	4	21	1	0	novel		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	SUPT6H-93	NM_003170	exon36	c.G4872A	p.T1624T	CTACACGACCCCA	.	93	4	126	0	.	49	49	0	0	0	A	27028024	G	A	27028024	2	1	13	1	0	0	0	0	0	0	0	1	15437	1045	37	1		1	SUPT6H	17	27028024	Silent	SNP	G	TCGA-OR-A5JF-01A-11D-A29I-10	19121495	27028024	54167186	119	2984										
IGFBP4	3487	hgsc.bcm.edu	37	chr17	38600092	38600092	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0705128205128205	11	0.514860817004901	1.54671441918405	2.21097735156091	1.13685005665366	1	1	0	ccctgctccgaggagaagctGgcgcgctgccgcccccccgt	13	19	0	1	rs598892	byfrequency	TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	IGFBP4-522	NM_001552	exon1	c.G105A	p.L35L	GAAGCTGGCGCGC	.	8	8	0	0	G|0.645;A|0.355	4	0	4	0	0	A	38600092	G	A	38600092	2	1	13	1	0	0	0	0	0	0	0	1	7602	1335	47	3		3	IGFBP4	17	38600092	Silent	SNP	G	TCGA-OR-A5JF-01A-11D-A29I-10	11572068	38600092	42595118	120	2985										
SLC35B1	10237	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	47780364	47780364	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0705128205128205	11	0.514860817004901	1.54671441918405	2.21097735156091	1.13685005665366	1	1	0	aaaatacacaaccgtcataaAgatgaagctctagagaaaga	7	7	2	4	novel		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	SLC35B1-90	NM_005827	exon8	c.T772A	p.F258I	TCATAAAGATGAA	.	136	108	195	0	.	1	0	1	0	0	T	47780364	A	T	47780364	3	4	13	1	0	0	0	0	1	0	0	0	14610	72	3	5	204	5	SLC35B1	17	47780364	Missense_Mutation	SNP	A	TCGA-OR-A5JF-01A-11D-A29I-10	9180272	47780364	33414846	121	2986										
FASN	2194	bcgsc.ca	37	chr17	80039481	80039481	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0705128205128205	11	0.514860817004901	1.54671441918405	2.21097735156091	1.13685005665366	1	1	0	tactgggagtgctcacccagGatgtgtgccacggcctccac	12	14	1	0	rs1140616	byfrequency	TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	FASN-90	NM_004104	exon37	c.C6402T	p.I2134I	ACCCAGGATGTGT	.	107	5	98	1	G|0.632;A|0.368	0	0	0	0	0	A	80039481	G	A	80039481	2	1	13	1	0	0	0	0	0	0	0	1	5702	1164	41	3		3	FASN	17	80039481	Silent	SNP	G	TCGA-OR-A5JF-01A-11D-A29I-10	32259117	80039481	1155729	122	2987										
DSC2	1824	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr18	28654754	28654754	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0705128205128205	11	0.514860817004901	1.54671441918405	2.21097735156091	1.13685005665366	1	1	0	ctcatcaggatcaaccgcaaCaatctccgcagatgacatgg	8	13	4	2	novel		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	DSC2-517	NM_024422	exon12	c.G1783T	p.V595F	CCGCAACAATCTC	.	181	128	228	0	.	0	0	0	0	0	A	28654754	C	A	28654754	3	1	13	1	0	0	0	0	1	0	0	0	4777	478	17	3	982	3	DSC2	18	28654754	Missense_Mutation	SNP	C	TCGA-OR-A5JF-01A-11D-A29I-10		28654754	49422494	123	2988										
GRIN3B	116444	hgsc.bcm.edu	37	chr19	1003374	1003374	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0705128205128205	11	0.514860817004901	1.54671441918405	2.21097735156091	1.13685005665366	1	1	0	cgcctggccccgatggcggcGccagtggggggtgaagcacc	18	14	0	1	rs34585248		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	GRIN3B-90	NM_138690	exon2	c.G672A	p.A224A	GGCGGCGCCAGTG	.	39	26	0	0	G|0.966;A|0.034	0	0	0	0	0	A	1003374	G	A	1003374	2	1	13	1	0	0	0	0	0	0	0	1	6805	1074	38	1		1	GRIN3B	19	1003374	Silent	SNP	G	TCGA-OR-A5JF-01A-11D-A29I-10		1003374	58125609	124	2989										
BTBD2	55643	broad.mit.edu	37	chr19	1993163	1993163	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0705128205128205	11	0.514860817004901	1.54671441918405	2.21097735156091	1.13685005665366	1	1	0	gggccaatctgcacctcgtcCgagtagagaaacctgcagaa	11	12	1	2	novel		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	BTBD2-92	NM_017797	exon3	c.G540A	p.S180S	CTCGTCCGAGTAG	.	59	7	27	0	.	0	0	0	0	0	T	1993163	C	T	1993163	2	4	13	1	0	0	0	0	0	0	0	1	1546	639	23	1		1	BTBD2	19	1993163	Silent	SNP	C	TCGA-OR-A5JF-01A-11D-A29I-10	989789	1993163	57135820	125	2990										
AMH	268	hgsc.bcm.edu	37	chr19	2251829	2251829	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0705128205128205	11	0.514860817004901	1.54671441918405	2.21097735156091	1.13685005665366	1	1	0	gatgcaggtccgtggggccgCcctggcgcgcccaccctgct	15	17	0	0	rs200031151		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	AMH-130	NM_000479	exon5	c.C1556T	p.A519V	GGGCCGCCCTGGC	.	48	24	1	0	.	0	0	0	0	0	T	2251829	C	T	2251829	3	4	13	1	0	0	0	0	1	0	0	0	572	739	26	3	1574	3	AMH	19	2251829	Missense_Mutation	SNP	C	TCGA-OR-A5JF-01A-11D-A29I-10	258666	2251829	56877154	126	2991										
LINGO3	645191	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr19	2290685	2290685	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0705128205128205	11	0.514860817004901	1.54671441918405	2.21097735156091	1.13685005665366	1	1	0	tgagggtcttgcgacgctgcAcgatccacagcaggcgacag	14	12	1	1	novel		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	.	NM_001101391	exon2	c.T1091C	p.V364A	CGCTGCACGATCC	.	89	28	32	0	.	2	2	0	0	0	G	2290685	A	G	2290685	3	3	13	1	0	0	0	0	1	0	0	0	8840	159	6	4	691	4	LINGO3	19	2290685	Missense_Mutation	SNP	A	TCGA-OR-A5JF-01A-11D-A29I-10	38856	2290685	56838298	127	2992										
PLIN5	440503	hgsc.bcm.edu	37	chr19	4524016	4524016	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0705128205128205	11	0.514860817004901	1.54671441918405	2.21097735156091	1.13685005665366	1	1	0	ggcgccggcgggcaggccccGcacgctggactccagagcct	16	17	0	1	rs1062223	byfrequency	TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	PLIN5-22	NM_001013706	exon8	c.C916T	p.R306W	GGCCCCGCACGCT	.	8	4	0	0	G|0.892;A|0.108	0	0	0	0	0	A	4524016	G	A	4524016	3	1	13	1	0	0	0	0	1	0	0	0	12122	1086	38	1	479	1	PLIN5	19	4524016	Missense_Mutation	SNP	G	TCGA-OR-A5JF-01A-11D-A29I-10	2233331	4524016	54604967	128	2993										
ZNRF4	148066	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	5455609	5455609	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0705128205128205	11	0.514860817004901	1.54671441918405	2.21097735156091	1.13685005665366	1	1	0	tccaactcaactgccctcgcGtcctggccacaggccccctg	8	20	1	0	novel		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	ZNRF4-135	NM_181710	exon1	c.G107A	p.R36H	CCTCGCGTCCTGG	.	108	11	84	0	.	0	0	0	0	0	A	5455609	G	A	5455609	3	1	13	1	0	0	0	0	1	0	0	0	18251	1145	40	1	109	1	ZNRF4	19	5455609	Missense_Mutation	SNP	G	TCGA-OR-A5JF-01A-11D-A29I-10	931593	5455609	53673374	129	2994										
RDH8	50700	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr19	10127866	10127866	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0705128205128205	11	0.514860817004901	1.54671441918405	2.21097735156091	1.13685005665366	1	1	0	gtggcccagtgtctcagctgTatccagggagaagtggacgt	15	9	1	1	rs2233793	byfrequency;alternate_allele	TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	RDH8-94	NM_015725	exon2	c.T297G	p.C99W	CAGCTGTATCCAG	.	146	25	94	0	T|0.968;C|0.032	0	0	0	0	0	G	10127866	T	G	10127866	3	3	13	1	0	0	0	0	1	0	0	0	13231	1644	57	5	243	5	RDH8	19	10127866	Missense_Mutation	SNP	T	TCGA-OR-A5JF-01A-11D-A29I-10	4672257	10127866	49001117	130	2995										
PSMD8	5714	hgsc.bcm.edu	37	chr19	38865440	38865440	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0705128205128205	11	0.514860817004901	1.54671441918405	2.21097735156091	1.13685005665366	1	1	0	catcacgcaagatggcggccGcggcggtgaacggggcggca	18	12	1	2	novel		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	PSMD8-68	NM_002812	exon1	c.G199T	p.A67S	GCGGCCGCGGCGG	.	64	4	7	0	.	57	57	0	0	0	T	38865440	G	T	38865440	3	4	13	1	0	0	0	0	1	0	0	0	12736	1087	38	2	201	2	PSMD8	19	38865440	Missense_Mutation	SNP	G	TCGA-OR-A5JF-01A-11D-A29I-10	28737574	38865440	20263543	131	2996										
GGN	199720	hgsc.bcm.edu	37	chr19	38876758	38876758	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0705128205128205	11	0.514860817004901	1.54671441918405	2.21097735156091	1.13685005665366	1	1	0	gccccaaggcccagagagtgCggccgcacgccgtcgcggcg	16	17	0	1	rs74911931		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	GGN-90	NM_152657	exon3	c.G1144A	p.A382T	AGAGTGCGGCCGC	.	33	21	2	0	C|0.982;T|0.018	2	0	2	0	0	T	38876758	C	T	38876758	3	4	13	1	0	0	0	0	1	0	0	0	6378	768	27	1	822	1	GGN	19	38876758	Missense_Mutation	SNP	C	TCGA-OR-A5JF-01A-11D-A29I-10	11318	38876758	20252225	132	2997										
CIC	23152	broad.mit.edu;bcgsc.ca	37	chr19	42795085	42795085	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0705128205128205	11	0.514860817004901	1.54671441918405	2.21097735156091	1.13685005665366	1	1	0	tcgggtgcctgggggctcccCgctgggtgtcagcttagtgt	17	11	1	0	novel		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	CIC-591	NM_015125	exon10	c.C2165G	p.P722R	GCTCCCCGCTGGG	.	170	8	115	0	.	10	9	1	0	0	G	42795085	C	G	42795085	3	3	13	1	0	0	0	0	1	0	0	0	3430	652	23	2	2203	2	CIC	19	42795085	Missense_Mutation	SNP	C	TCGA-OR-A5JF-01A-11D-A29I-10	3918327	42795085	16333898	133	2998										
PTGIR	5739	hgsc.bcm.edu	37	chr19	47127324	47127324	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0705128205128205	11	0.514860817004901	1.54671441918405	2.21097735156091	1.13685005665366	1	1	0	tcggtggccgccagtccggtCaccagcaccgcgaaggccga	14	16	1	0	rs2229128	byfrequency	TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	PTGIR-522	NM_000960	exon2	c.G159C	p.V53V	TCCGGTCACCAGC	.	14	14	0	0	C|0.254;G|0.746	2	0	2	0	0	G	47127324	C	G	47127324	2	3	13	1	0	0	0	0	0	0	0	1	12784	813	29	3		3	PTGIR	19	47127324	Silent	SNP	C	TCGA-OR-A5JF-01A-11D-A29I-10	4332239	47127324	12001659	134	2999										
RASIP1	54922	hgsc.bcm.edu	37	chr19	49232226	49232226	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0705128205128205	11	0.514860817004901	1.54671441918405	2.21097735156091	1.13685005665366	1	1	0	cttgatgagccgggccaggcGgcccagcagtcgtggcaggt	17	12	0	2	rs2287922		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	RASIP1-228	NM_017805	exon5	c.C1801T	p.R601C	CCAGGCGGCCCAG	.	5	4	0	0	G|0.738;A|0.262	8	3	5	0	0	A	49232226	G	A	49232226	3	1	13	1	0	0	0	0	1	0	0	0	13113	1116	39	1	1122	1	RASIP1	19	49232226	Missense_Mutation	SNP	G	TCGA-OR-A5JF-01A-11D-A29I-10	2104902	49232226	9896757	135	3000										
KIR3DL2	3812	broad.mit.edu;bcgsc.ca	37	chr19	55378056	55378056	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0705128205128205	11	0.514860817004901	1.54671441918405	2.21097735156091	1.13685005665366	1	1	0	catacagagaaaaatcagtcGcccttctcagaggcccaaga	8	12	2	3	novel		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	KIR3DL2-92	NM_006737	exon9	c.G1238T	p.R413L	TCAGTCGCCCTTC	.	279	8	181	1	.	0	0	0	0	0	T	55378056	G	T	55378056	3	4	13	1	0	0	0	0	1	0	0	0	8342	1087	38	2	1272	2	KIR3DL2	19	55378056	Missense_Mutation	SNP	G	TCGA-OR-A5JF-01A-11D-A29I-10	6145830	55378056	3750927	136	3001										
ZNF814	730051	ucsc.edu	37	chr19	58384712	58384712	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0705128205128205	11	0.514860817004901	1.54671441918405	2.21097735156091	1.13685005665366	1	1	0	acataaggtctttctccagtAtggccatgctggtgtagaat	10	8	2	1	novel		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	.	NM_001144989	exon3	c.T2046C	p.H682H	TCCAGTATGGCCA	.	224	1	156	0	.	8	6	2	0	0	G	58384712	A	G	58384712	2	3	13	1	0	0	0	0	0	0	0	1	18213	446	16	4		4	ZNF814	19	58384712	Silent	SNP	A	TCGA-OR-A5JF-01A-11D-A29I-10	3006656	58384712	744271	137	3002										
RBM12	10137	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr20	34242149	34242149	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0705128205128205	11	0.514860817004901	1.54671441918405	2.21097735156091	1.13685005665366	1	1	0	cacatagcgttgaatcatcaGcattctgtttcgtttcaaag	7	9	4	1	novel		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	RBM12-93	NM_001198840	exon2	c.C1096G	p.L366V	TCATCAGCATTCT	.	72	11	50	0	.	15	10	5	0	0	C	34242149	G	C	34242149	3	2	13	1	0	0	0	0	1	0	0	0	13148	962	34	3	1706	3	RBM12	20	34242149	Missense_Mutation	SNP	G	TCGA-OR-A5JF-01A-11D-A29I-10		34242149	28783371	138	3003										
ZHX3	23051	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr20	39831045	39831045	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0705128205128205	11	0.514860817004901	1.54671441918405	2.21097735156091	1.13685005665366	1	1	0	aggggcaatgaccagtagccCtggtgggaagttgcctcgct	15	10	0	1	novel		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	ZHX3-93	NM_015035	exon3	c.G2512C	p.G838R	GTAGCCCTGGTGG	.	208	94	133	0	.	24	9	15	0	0	G	39831045	C	G	39831045	3	3	13	1	0	0	0	0	1	0	0	0	17714	681	24	3	366	3	ZHX3	20	39831045	Missense_Mutation	SNP	C	TCGA-OR-A5JF-01A-11D-A29I-10	5588896	39831045	23194475	139	3004										
WISP2	8839	hgsc.bcm.edu	37	chr20	43348735	43348735	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0705128205128205	11	0.514860817004901	1.54671441918405	2.21097735156091	1.13685005665366	1	1	0	cccggggcaggacccggtggCcggggggccctgtgcctctg	19	15	1	0	rs2296530	byfrequency	TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	WISP2-130	NM_003881	exon2	c.C258A	p.G86G	CGGTGGCCGGGGG	.	12	7	0	0	C|0.615;A|0.385	25	16	9	0	0	A	43348735	C	A	43348735	2	1	13	1	0	0	0	0	0	0	0	1	17411	726	26	3		3	WISP2	20	43348735	Silent	SNP	C	TCGA-OR-A5JF-01A-11D-A29I-10	3517690	43348735	19676785	140	3005										
SEMG1	6406	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr20	43836226	43836226	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0705128205128205	11	0.514860817004901	1.54671441918405	2.21097735156091	1.13685005665366	1	1	0	ctacataagacgacaaaatcAcaacgacatctaggtggaag	8	9	2	1	novel		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	SEMG1-92	NM_003007	exon2	c.A288G	p.S96S	AAAATCACAACGA	.	246	116	184	0	.	0	0	0	0	0	G	43836226	A	G	43836226	2	3	13	1	0	0	0	0	0	0	0	1	14079	146	6	4		4	SEMG1	20	43836226	Silent	SNP	A	TCGA-OR-A5JF-01A-11D-A29I-10	487491	43836226	19189294	141	3006										
DNTTIP1	116092	hgsc.bcm.edu	37	chr20	44420682	44420682	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0705128205128205	11	0.514860817004901	1.54671441918405	2.21097735156091	1.13685005665366	1	1	0	gccgagcagccgcggggaccTagcggggccgagaggggcgg	22	12	0	1	rs2664591	byfrequency	TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	DNTTIP1-91	NM_052951	exon1	c.T39C	p.P13P	GGGACCTAGCGGG	.	7	7	0	0	T|0.311;C|0.689	7	0	7	0	0	C	44420682	T	C	44420682	2	2	13	1	0	0	0	0	0	0	0	1	4692	1509	53	4		4	DNTTIP1	20	44420682	Silent	SNP	T	TCGA-OR-A5JF-01A-11D-A29I-10	584456	44420682	18604838	142	3007										
SULF2	55959	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr20	46290611	46290611	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0705128205128205	11	0.514860817004901	1.54671441918405	2.21097735156091	1.13685005665366	1	1	0	tgtagctggttgaggacatcCctgtccagtgtgttcactgc	12	10	1	1	novel		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	SULF2-293	NM_001161841	exon18	c.G2400C	p.R800S	GACATCCCTGTCC	.	242	93	126	0	.	710	334	374	1	1	G	46290611	C	G	46290611	3	3	13	1	0	0	0	0	1	0	0	0	15408	622	22	3	228	3	SULF2	20	46290611	Missense_Mutation	SNP	C	TCGA-OR-A5JF-01A-11D-A29I-10	1869929	46290611	16734909	143	3008										
APCDD1L	164284	hgsc.bcm.edu	37	chr20	57042377	57042377	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0705128205128205	11	0.514860817004901	1.54671441918405	2.21097735156091	1.13685005665366	1	1	0	ctgagcccgggcgctccgcaGctcgtacagcgccccaggca	13	18	0	1	rs6128351		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	APCDD1L-227	NM_153360	exon3	c.C526T	p.L176L	TCCGCAGCTCGTA	.	7	7	0	0	G|0.973;A|0.027	0	0	0	0	0	A	57042377	G	A	57042377	2	1	13	1	0	0	0	0	0	0	0	1	766	962	34	3		3	APCDD1L	20	57042377	Silent	SNP	G	TCGA-OR-A5JF-01A-11D-A29I-10	10751766	57042377	5983143	144	3009										
TPTE	7179	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr21	10914373	10914373	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0705128205128205	11	0.514860817004901	1.54671441918405	2.21097735156091	1.13685005665366	1	1	0	tttctcttaccgaacattttCctaatgaaatagtggaaaag	6	7	1	1	novel		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	TPTE-344	NM_199261	exon21	c.G1346A	p.G449E	CATTTTCCTAATG	.	258	19	286	0	.	0	0	0	0	0	T	10914373	C	T	10914373	3	4	13	1	0	0	0	0	1	0	0	0	16468	855	30	3	325	3	TPTE	21	10914373	Missense_Mutation	SNP	C	TCGA-OR-A5JF-01A-11D-A29I-10		10914373	37215522	145	3010										
UMODL1	89766	ucsc.edu;bcgsc.ca	37	chr21	43547814	43547814	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0705128205128205	11	0.514860817004901	1.54671441918405	2.21097735156091	1.13685005665366	1	1	0	caacacatacaccaacgtgaTtgagaacggcaactccaata	6	12	0	2	novel		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	UMODL1-93	NM_173568	exon19	c.T3947C	p.I1316T	ACGTGATTGAGAA	.	148	124	163	3	.	0	0	0	0	0	C	43547814	T	C	43547814	3	2	13	1	0	0	0	0	1	0	0	0	17018	1493	52	4	4021	4	UMODL1	21	43547814	Missense_Mutation	SNP	T	TCGA-OR-A5JF-01A-11D-A29I-10	32633441	43547814	4582081	146	3011										
KRTAP12-2	353323	bcgsc.ca	37	chr21	46086377	46086377	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0705128205128205	11	0.514860817004901	1.54671441918405	2.21097735156091	1.13685005665366	1	1	0	tcatgctcagcagcaggaagAgatactgtaggagatgggtc	14	7	2	2	rs2838622	byfrequency	TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	.	NM_181684	exon1	c.T427C	p.S143P	AGGAAGAGATACT	.	345	11	363	5	A|0.429;G|0.571	0	0	0	0	0	G	46086377	A	G	46086377	3	3	13	1	0	0	0	0	1	0	0	0	8540	304	11	4	17	4	KRTAP12-2	21	46086377	Missense_Mutation	SNP	A	TCGA-OR-A5JF-01A-11D-A29I-10	2538563	46086377	2043518	147	3012										
SCARF2	91179	hgsc.bcm.edu	37	chr22	20780091	20780091	+	Silent	SNP	C	C	G													0.0705128205128205	11	0.514860817004901	1.54671441918405	2.21097735156091	1.13685005665366	1	1	0	gtcgcctcctcgggcagcccCggggggcgcggcgttgggtc					rs77189880	bycluster;byfrequency;by1000genomes	TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	SCARF2-341	NM_153334	exon11	c.G2187C	p.P729P	CAGCCCCGGGGGG	.	10	10	0	0	C|0.138;G|0.862	0	0	0	0	0	G	20780091	C	G	20780091	2	3	13	1	0	0	0	0	0	0	0	1	13919	639	23	2		2	SCARF2	22	20780091	Silent	SNP	C	TCGA-OR-A5JF-01A-11D-A29I-10		20780091	30524475	148	3013	24	2								
SCARF2	91179	hgsc.bcm.edu	37	chr22	20780097	20780097	+	Silent	SNP	G	G	C													0.0705128205128205	11	0.514860817004901	1.54671441918405	2.21097735156091	1.13685005665366	1	1	0	tcctcgggcagccccgggggGcgcggcgttgggtcgcgggt					rs759609	bycluster;byfrequency;by1000genomes	TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	SCARF2-341	NM_153334	exon11	c.C2181G	p.R727R	CGGGGGGCGCGGC	.	12	12	0	0	G|0.826;C|0.174	0	0	0	0	0	C	20780097	G	C	20780097	2	2	13	1	0	0	0	0	0	0	0	1	13919	1190	42	3		3	SCARF2	22	20780097	Silent	SNP	G	TCGA-OR-A5JF-01A-11D-A29I-10	6	20780097	30524469	149	3014	24	2								
SREBF2	6721	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr22	42262853	42262854	+	Frame_Shift_Ins	INS	-	-	T													0.0705128205128205	11	0.514860817004901	1.54671441918405	2.21097735156091	1.13685005665366	1	1	0	gagatgctgcaatttgtcagINStaatcaagtgggagagttcc					novel		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	SREBF2-154	NM_004599	exon2	c.107_108insT	p.S36fs	TTGTCAGTAATCA	.	84	22	92	0	.	0	0	0	0	0	T	42262854	-	T	42262853	7	5	13	1	0	1	1	0	0	0	0	0	15179	1029	36	0	113	0	SREBF2	22	42262853	Frame_Shift_Ins	INS	-	TCGA-OR-A5JF-01A-11D-A29I-10	21482756	42262853	9041713	150	3015										
ACOT9	23597	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	23754092	23754092	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0705128205128205	11	0.514860817004901	1.54671441918405	2.21097735156091	1.13685005665366	1	1	0	tctggggtccttgagtcagtCctcttccaggagtaagctgc	12	11	3	1	novel		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	ACOT9-133	NM_001037171	exon2	c.G62A	p.G21E	GTCAGTCCTCTTC	.	210	93	151	0	.	24	24	0	0	0	T	23754092	C	T	23754092	3	4	13	1	0	0	0	0	1	0	0	0	157	855	30	3	1344	3	ACOT9	23	23754092	Missense_Mutation	SNP	C	TCGA-OR-A5JF-01A-11D-A29I-10		23754092	131516468	151	3016										
CXorf38	159013	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	40496395	40496395	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0705128205128205	11	0.514860817004901	1.54671441918405	2.21097735156091	1.13685005665366	1	1	0	aagagtgcatgatctcattaCgacatttaattacctgcaga	7	8	1	3	novel		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	CXorf38-131	NM_144970	exon4	c.G485A	p.R162H	TCATTACGACATT	.	89	33	96	0	.	21	21	0	0	0	T	40496395	C	T	40496395	3	4	13	1	0	0	0	0	1	0	0	0	4113	536	19	1	486	1	CXorf38	23	40496395	Missense_Mutation	SNP	C	TCGA-OR-A5JF-01A-11D-A29I-10	16742303	40496395	114774165	152	3017										
USP51	158880	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chrX	55515272	55515272	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0705128205128205	11	0.514860817004901	1.54671441918405	2.21097735156091	1.13685005665366	1	1	0	ccgcctcctccattttccccGccttctcaaccgcctcctca	3	23	2	0	novel		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	USP51-659	NM_201286	exon2	c.C101T	p.A34V	TTCCCCGCCTTCT	.	79	9	53	0	.	5	5	0	0	0	A	55515272	G	A	55515272	3	1	13	1	0	0	0	0	1	0	0	0	17121	1087	38	1	2038	1	USP51	23	55515272	Missense_Mutation	SNP	G	TCGA-OR-A5JF-01A-11D-A29I-10	15018877	55515272	99755288	153	3018										
TAF1	6872	broad.mit.edu;bcgsc.ca	37	chrX	70674672	70674672	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0705128205128205	11	0.514860817004901	1.54671441918405	2.21097735156091	1.13685005665366	1	1	0	aggaagcagaattagaaagcCtggacccaatgaccccaggg	12	10	0	3	novel		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	TAF1-900	NM_004606	exon34	c.C4963A	p.L1655M	GAAAGCCTGGACC	.	217	11	203	1	.	28	28	0	0	0	A	70674672	C	A	70674672	3	1	13	1	0	0	0	0	1	0	0	0	15550	680	24	3	5097	3	TAF1	23	70674672	Missense_Mutation	SNP	C	TCGA-OR-A5JF-01A-11D-A29I-10	15159400	70674672	84595888	154	3019										
ATRX	546	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	76875873	76875873	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0705128205128205	11	0.514860817004901	1.54671441918405	2.21097735156091	1.13685005665366	1	1	0	attaactcacactcaattagGttattttgaagtggtgttcc	7	7	2	1	novel		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	ATRX-248	NM_000489	exon20	c.C5262A	p.N1754K	AATTAGGTTATTT	.	384	136	287	0	.	0	0	0	0	0	T	76875873	G	T	76875873	3	4	13	1	0	0	0	0	1	0	0	0	1209	1252	44	3	2280	3	ATRX	23	76875873	Missense_Mutation	SNP	G	TCGA-OR-A5JF-01A-11D-A29I-10	6201201	76875873	78394687	155	3020										
PCDH11X	27328	broad.mit.edu	37	chrX	91090885	91090885	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0705128205128205	11	0.514860817004901	1.54671441918405	2.21097735156091	1.13685005665366	1	1	0	gactggttaagatacgttttCtgatagaagatataaatgat	9	3	1	5	novel		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	PCDH11X-193	NM_001168363	exon1	c.C382A	p.L128M	CGTTTTCTGATAG	.	342	57	240	1	.	0	0	0	0	0	A	91090885	C	A	91090885	3	1	13	1	0	0	0	0	1	0	0	0	11537	912	32	3	384	3	PCDH11X	23	91090885	Missense_Mutation	SNP	C	TCGA-OR-A5JF-01A-11D-A29I-10	14215012	91090885	64179675	156	3021										
ZMAT1	84460	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	101139569	101139569	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0705128205128205	11	0.514860817004901	1.54671441918405	2.21097735156091	1.13685005665366	1	1	0	atggtgctgcgtatgtccggAaagtctcaaatgggagtctt	13	7	2	0	novel		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	ZMAT1-131	NM_001011657	exon7	c.T830C	p.F277S	GTCCGGAAAGTCT	.	149	24	106	0	.	16	15	1	0	0	G	101139569	A	G	101139569	3	3	13	1	0	0	0	0	1	0	0	0	17728	246	9	4	1090	4	ZMAT1	23	101139569	Missense_Mutation	SNP	A	TCGA-OR-A5JF-01A-11D-A29I-10	10048684	101139569	54130991	157	3022										
ALG13	79868	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	110973752	110973752	+	Splice_Site	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0705128205128205	11	0.514860817004901	1.54671441918405	2.21097735156091	1.13685005665366	1	1	0	tactttggctatattctctaGagccagactatgaaacttca	6	9	2	3	novel		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	ALG13-130	NM_001257230	exon21	c.2090-1G>C	.	TCTCTAGAGCCAG	.	164	37	137	0	.	0	0	0	0	0	C	110973752	G	C	110973752	5	2	13	1	0	0	0	0	0	0	1	0	515	956	33	3	2625	3	ALG13	23	110973752	Splice_Site	SNP	G	TCGA-OR-A5JF-01A-11D-A29I-10	9834183	110973752	44296808	158	3023										
MAP7D3	79649	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	135303014	135303014	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0705128205128205	11	0.514860817004901	1.54671441918405	2.21097735156091	1.13685005665366	1	1	0	aatatgtttttggctctttaCggacctggctggtaccatct	9	9	2	0	novel		TCGA-OR-A5JF-01A-11D-A29I-10	TCGA-OR-A5JF-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0c0a475a-8dd3-454a-a217-84368080e029	8c78352c-8bfd-4ff0-86e3-4bab48fd510c	.	MAP7D3-110	NM_024597	exon16	c.G2396A	p.R799H	TCTTTACGGACCT	.	158	53	98	0	.	7	7	0	0	0	T	135303014	C	T	135303014	3	4	13	1	0	0	0	0	1	0	0	0	9297	536	19	1	246	1	MAP7D3	23	135303014	Missense_Mutation	SNP	C	TCGA-OR-A5JF-01A-11D-A29I-10	24329262	135303014	19967546	159	3024										
HES3	390992	hgsc.bcm.edu	37	chr1	6305303	6305303	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0149253731343284	1	1	0.520411549950216	0	0.704086214638527	1	1	0	cccctggtgcccgagagcgcCgccggcagcaccatggacag	14	17	0	1	rs61760837		TCGA-OR-A5JH-01A-11D-A30A-10	TCGA-OR-A5JH-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4eaa9703-dace-478d-b1ea-7c326ad34362	da172edc-7af4-48d6-bbab-2cf091662641	.	HES3-514	NM_001024598	exon4	c.C297A	p.A99A	GAGCGCCGCCGGC	.	4	4	0	0	C|0.438;A|0.562	0	0	0	0	0	A	6305303	C	A	6305303	2	1	14	1	0	0	0	0	0	0	0	1	7088	639	23	2		2	HES3	1	6305303	Silent	SNP	C	TCGA-OR-A5JH-01A-11D-A30A-10		6305303	242945318	1	3025										
KIF1B	23095	broad.mit.edu	37	chr1	10351187	10351187	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0149253731343284	1	1	0.520411549950216	0	0.704086214638527	1	1	0	aatgaaacttgggaagagaaGcttcgtaaaacagaggccat	11	6	0	3	novel		TCGA-OR-A5JH-01A-11D-A30A-10	TCGA-OR-A5JH-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4eaa9703-dace-478d-b1ea-7c326ad34362	da172edc-7af4-48d6-bbab-2cf091662641	.	KIF1B-93	NM_183416	exon14	c.G1344T	p.K448N	AGAGAAGCTTCGT	.	54	4	41	0	.	0	0	0	0	0	T	10351187	G	T	10351187	3	4	14	1	0	0	0	0	1	0	0	0	8305	962	34	3	1394	3	KIF1B	1	10351187	Missense_Mutation	SNP	G	TCGA-OR-A5JH-01A-11D-A30A-10	4045884	10351187	238899434	2	3026										
TMCO4	255104	bcgsc.ca	37	chr1	20009737	20009737	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0149253731343284	1	1	0.520411549950216	0	0.704086214638527	1	1	0	gccaatttggaggtgtctccGgatatgggaccctgggtttg	15	8	1	0	rs10917514	byfrequency	TCGA-OR-A5JH-01A-11D-A30A-10	TCGA-OR-A5JH-10A-01D-A30A-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4eaa9703-dace-478d-b1ea-7c326ad34362	da172edc-7af4-48d6-bbab-2cf091662641	.	TMCO4-68	NM_181719	exon16	c.C1701T	p.S567S	GTCTCCGGATATG	.	289	15	313	4	G|0.888;A|0.112	0	0	0	0	0	A	20009737	G	A	20009737	2	1	14	1	0	0	0	0	0	0	0	1	16035	1103	39	1		1	TMCO4	1	20009737	Silent	SNP	G	TCGA-OR-A5JH-01A-11D-A30A-10	9658550	20009737	229240884	3	3027										
KCNQ4	9132	bcgsc.ca	37	chr1	41296828	41296828	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0149253731343284	1	1	0.520411549950216	0	0.704086214638527	1	1	0	acgggtccttccaagcagcaTctggcacctccaacaatgcc	8	16	1	0	rs34287852	byfrequency	TCGA-OR-A5JH-01A-11D-A30A-10	TCGA-OR-A5JH-10A-01D-A30A-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4eaa9703-dace-478d-b1ea-7c326ad34362	da172edc-7af4-48d6-bbab-2cf091662641	.	KCNQ4-90	NM_004700	exon10	c.T1365G	p.H455Q	GCAGCATCTGGCA	.	312	10	334	5	T|0.858;G|0.142	0	0	0	0	0	G	41296828	T	G	41296828	3	3	14	1	0	0	0	0	1	0	0	0	8106	1432	50	5	1403	5	KCNQ4	1	41296828	Missense_Mutation	SNP	T	TCGA-OR-A5JH-01A-11D-A30A-10	21287091	41296828	207953793	4	3028										
C1orf173	127254	bcgsc.ca	37	chr1	75037845	75037845	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0149253731343284	1	1	0.520411549950216	0	0.704086214638527	1	1	0	tgctctgtgtctctggcttcActcagtctttcccctcctcc	6	17	5	0	rs12723334	byfrequency	TCGA-OR-A5JH-01A-11D-A30A-10	TCGA-OR-A5JH-10A-01D-A30A-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4eaa9703-dace-478d-b1ea-7c326ad34362	da172edc-7af4-48d6-bbab-2cf091662641	.	C1orf173-94	NM_001002912	exon14	c.T3549C	p.S1183S	GGCTTCACTCAGT	.	78	4	93	0	A|0.649;G|0.351	0	0	0	0	0	G	75037845	A	G	75037845	2	3	14	1	0	0	0	0	0	0	0	1	2020	156	6	4		4	C1orf173	1	75037845	Silent	SNP	A	TCGA-OR-A5JH-01A-11D-A30A-10	33741017	75037845	174212776	5	3029										
OVGP1	5016	bcgsc.ca	37	chr1	111957533	111957533	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0149253731343284	1	1	0.520411549950216	0	0.704086214638527	1	1	0	tgactcacaggggtcacagaCtgatgacccacaggggtcag	13	11	3	4	rs112145355		TCGA-OR-A5JH-01A-11D-A30A-10	TCGA-OR-A5JH-10A-01D-A30A-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4eaa9703-dace-478d-b1ea-7c326ad34362	da172edc-7af4-48d6-bbab-2cf091662641	.	OVGP1-135	NM_002557	exon11	c.G1590A	p.Q530Q	CACAGACTGATGA	.	75	24	74	0	C|0.500;T|0.500	0	0	0	0	0	T	111957533	C	T	111957533	2	4	14	1	0	0	0	0	0	0	0	1	11354	564	20	3		3	OVGP1	1	111957533	Silent	SNP	C	TCGA-OR-A5JH-01A-11D-A30A-10	36919688	111957533	137293088	6	3030										
CHRNB2	1141	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	154542804	154542804	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0149253731343284	1	1	0.520411549950216	0	0.704086214638527	1	1	0	gaagaaagttcggctcccttCcaaacacatctggctcccag	8	14	1	1	novel		TCGA-OR-A5JH-01A-11D-A30A-10	TCGA-OR-A5JH-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4eaa9703-dace-478d-b1ea-7c326ad34362	da172edc-7af4-48d6-bbab-2cf091662641	.	CHRNB2-90	NM_000748	exon4	c.C326A	p.S109Y	TCCCTTCCAAACA	.	114	12	120	0	.	0	0	0	0	0	A	154542804	C	A	154542804	3	1	14	1	0	0	0	0	1	0	0	0	3397	855	30	3	340	3	CHRNB2	1	154542804	Missense_Mutation	SNP	C	TCGA-OR-A5JH-01A-11D-A30A-10	42585271	154542804	94707817	7	3031										
OR6K3	391114	bcgsc.ca	37	chr1	158687896	158687896	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0149253731343284	1	1	0.520411549950216	0	0.704086214638527	1	1	0	agtcactgttgattggtttcCgctctccatatttctagtag	8	9	3	1	rs857705	byfrequency	TCGA-OR-A5JH-01A-11D-A30A-10	TCGA-OR-A5JH-10A-01D-A30A-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4eaa9703-dace-478d-b1ea-7c326ad34362	da172edc-7af4-48d6-bbab-2cf091662641	.	OR6K3-70	NM_001005327	exon1	c.G10A	p.G4R	GGTTTCCGCTCTC	.	56	5	50	0	C|0.776;T|0.224	0	0	0	0	0	T	158687896	C	T	158687896	3	4	14	1	0	0	0	0	1	0	0	0	11232	661	23	1	939	1	OR6K3	1	158687896	Missense_Mutation	SNP	C	TCGA-OR-A5JH-01A-11D-A30A-10	4145092	158687896	90562725	8	3032										
TPO	7173	hgsc.bcm.edu	37	chr2	1481231	1481231	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0149253731343284	1	1	0.520411549950216	0	0.704086214638527	1	1	0	ggccggagacggccgcgccaGcgaggtcccctccctgacgg	16	17	0	2	rs2175977	byfrequency	TCGA-OR-A5JH-01A-11D-A30A-10	TCGA-OR-A5JH-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4eaa9703-dace-478d-b1ea-7c326ad34362	da172edc-7af4-48d6-bbab-2cf091662641	.	TPO-332	NM_175719	exon8	c.G1193C	p.S398T	GCGCCAGCGAGGT	.	9	8	0	0	G|0.301;C|0.699	0	0	0	0	0	C	1481231	G	C	1481231	3	2	14	1	0	0	0	0	1	0	0	0	16448	971	34	3	1219	3	TPO	2	1481231	Missense_Mutation	SNP	G	TCGA-OR-A5JH-01A-11D-A30A-10		1481231	241718142	9	3033										
USP34	9736	broad.mit.edu	37	chr2	61417514	61417514	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0149253731343284	1	1	0.520411549950216	0	0.704086214638527	1	1	0	ataagagtgctgatcaaattGgcacagtttgcttcagaaaa	9	6	2	3	novel		TCGA-OR-A5JH-01A-11D-A30A-10	TCGA-OR-A5JH-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4eaa9703-dace-478d-b1ea-7c326ad34362	da172edc-7af4-48d6-bbab-2cf091662641	.	USP34-579	NM_014709	exon78	c.C9765A	p.A3255A	CAAATTGGCACAG	.	68	3	56	0	.	0	0	0	0	0	T	61417514	G	T	61417514	2	4	14	1	0	0	0	0	0	0	0	1	17103	1335	47	3		3	USP34	2	61417514	Silent	SNP	G	TCGA-OR-A5JH-01A-11D-A30A-10	59936283	61417514	181781859	10	3034										
POTEE	445582	ucsc.edu	37	chr2	131976171	131976172	+	Missense_Mutation	DNP	CA	CA	TG													0.0149253731343284	1	1	0.520411549950216	0	0.704086214638527	1	1	0	gcaagatgggcaagtggtgcCaccactgcttcccctgctgc					novel		TCGA-OR-A5JH-01A-11D-A30A-10	TCGA-OR-A5JH-10A-01D-A30A-10	CA	CA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4eaa9703-dace-478d-b1ea-7c326ad34362	da172edc-7af4-48d6-bbab-2cf091662641	.	.	NM_001083538	exon1	c.A197G	p.H66C	GGTGCCACCACTG	.	173	0	211	0	A|0.500;G|0.500	0	0	0	0	0	TG	131976172	CA	TG	131976171	3	4	14	1	0	0	0	0	1	0	0	0	12293	594	21	3	198	3	POTEE	2	131976171	Missense_Mutation	DNP	CA	TCGA-OR-A5JH-01A-11D-A30A-10	70558657	131976171	111223202	11	3035										
SESTD1	91404	bcgsc.ca	37	chr2	179986553	179986553	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0149253731343284	1	1	0.520411549950216	0	0.704086214638527	1	1	0	tgtatgtggtccacattttcTttattttcaatggttacatc	6	7	2	0	rs56336305	byfrequency	TCGA-OR-A5JH-01A-11D-A30A-10	TCGA-OR-A5JH-10A-01D-A30A-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4eaa9703-dace-478d-b1ea-7c326ad34362	da172edc-7af4-48d6-bbab-2cf091662641	.	SESTD1-228	NM_178123	exon13	c.A1386G	p.K462K	ATTTTCTTTATTT	.	52	4	78	0	T|0.982;C|0.018	0	0	0	0	0	C	179986553	T	C	179986553	2	2	14	1	0	0	0	0	0	0	0	1	14162	1606	56	4		4	SESTD1	2	179986553	Silent	SNP	T	TCGA-OR-A5JH-01A-11D-A30A-10	48010382	179986553	63212820	12	3036										
SMARCC1	6599	bcgsc.ca	37	chr3	47712202	47712202	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0149253731343284	1	1	0.520411549950216	0	0.704086214638527	1	1	0	tctcttccagcactagcaccTttactctaaggaaacaaaat	4	12	2	0	rs1141601	byfrequency	TCGA-OR-A5JH-01A-11D-A30A-10	TCGA-OR-A5JH-10A-01D-A30A-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4eaa9703-dace-478d-b1ea-7c326ad34362	da172edc-7af4-48d6-bbab-2cf091662641	.	SMARCC1-228	NM_003074	exon19	c.A1845G	p.K615K	AGCACCTTTACTC	.	248	7	244	0	T|0.472;G|0.091	0	0	0	0	0	C	47712202	T	C	47712202	2	2	14	1	0	0	0	0	0	0	0	1	14810	1606	56	4		4	SMARCC1	3	47712202	Silent	SNP	T	TCGA-OR-A5JH-01A-11D-A30A-10		47712202	150310228	13	3037										
LRIG1	26018	hgsc.bcm.edu	37	chr3	66550756	66550756	+	Missense_Mutation	SNP	G	G	C													0.0149253731343284	1	1	0.520411549950216	0	0.704086214638527	1	1	0	ggtcaccggctccagccgaaGcaaaagcagccagagaagga					rs1403625		TCGA-OR-A5JH-01A-11D-A30A-10	TCGA-OR-A5JH-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4eaa9703-dace-478d-b1ea-7c326ad34362	da172edc-7af4-48d6-bbab-2cf091662641	.	LRIG1-230	NM_015541	exon1	c.C76G	p.L26V	GCCGAAGCAAAAG	.	8	8	0	0	G|0.237;C|0.763	0	0	0	0	0	C	66550756	G	C	66550756	3	2	14	1	0	0	0	0	1	0	0	0	8971	971	34	3	3281	3	LRIG1	3	66550756	Missense_Mutation	SNP	G	TCGA-OR-A5JH-01A-11D-A30A-10	18838554	66550756	131471674	14	3038	25	2								
LRIG1	26018	hgsc.bcm.edu	37	chr3	66550762	66550762	+	Missense_Mutation	SNP	G	G	C													0.0149253731343284	1	1	0.520411549950216	0	0.704086214638527	1	1	0	cggctccagccgaagcaaaaGcagccagagaaggagaaggc					rs1403626	byfrequency	TCGA-OR-A5JH-01A-11D-A30A-10	TCGA-OR-A5JH-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4eaa9703-dace-478d-b1ea-7c326ad34362	da172edc-7af4-48d6-bbab-2cf091662641	.	LRIG1-230	NM_015541	exon1	c.C70G	p.L24V	GCAAAAGCAGCCA	.	12	12	0	0	G|0.252;C|0.748	0	0	0	0	0	C	66550762	G	C	66550762	3	2	14	1	0	0	0	0	1	0	0	0	8971	971	34	3	3287	3	LRIG1	3	66550762	Missense_Mutation	SNP	G	TCGA-OR-A5JH-01A-11D-A30A-10	6	66550762	131471668	15	3039	25	2								
ZPLD1	131368	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	102171984	102171984	+	Splice_Site	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0149253731343284	1	1	0.520411549950216	0	0.704086214638527	1	1	0	gctgtggaaacaacctggtgGtaagattagtgtgacattgt	13	5	0	2	novel		TCGA-OR-A5JH-01A-11D-A30A-10	TCGA-OR-A5JH-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4eaa9703-dace-478d-b1ea-7c326ad34362	da172edc-7af4-48d6-bbab-2cf091662641	.	ZPLD1-72	NM_175056	exon3	c.375+1G>T	.	CTGGTGGTAAGAT	.	76	8	72	0	.	0	0	0	0	0	T	102171984	G	T	102171984	5	4	14	1	0	0	0	0	0	0	1	0	18258	1275	44	3	386	3	ZPLD1	3	102171984	Splice_Site	SNP	G	TCGA-OR-A5JH-01A-11D-A30A-10	35621222	102171984	95850446	16	3040										
DOK7	285489	broad.mit.edu	37	chr4	3494664	3494664	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0149253731343284	1	1	0.520411549950216	0	0.704086214638527	1	1	0	atggtgggtgcctcaaggccAccccccaagccgctgcgtcc	12	17	1	0	novel		TCGA-OR-A5JH-01A-11D-A30A-10	TCGA-OR-A5JH-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4eaa9703-dace-478d-b1ea-7c326ad34362	da172edc-7af4-48d6-bbab-2cf091662641	.	DOK7-91	NM_173660	exon7	c.A951C	p.P317P	AAGGCCACCCCCC	.	113	31	20	2	.	0	0	0	0	0	C	3494664	A	C	3494664	2	2	14	1	0	0	0	0	0	0	0	1	4713	146	6	5		5	DOK7	4	3494664	Silent	SNP	A	TCGA-OR-A5JH-01A-11D-A30A-10		3494664	187659612	17	3041										
ZAR1	326340	hgsc.bcm.edu	37	chr4	48492769	48492769	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0149253731343284	1	1	0.520411549950216	0	0.704086214638527	1	1	0	tggcggctctttctcccagcAgccatcccgtcgaggcctgg	12	16	2	0	rs74929644		TCGA-OR-A5JH-01A-11D-A30A-10	TCGA-OR-A5JH-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4eaa9703-dace-478d-b1ea-7c326ad34362	da172edc-7af4-48d6-bbab-2cf091662641	.	ZAR1-90	NM_175619	exon1	c.A461T	p.Q154L	CCCAGCAGCCATC	.	8	8	0	0	A|0.552;T|0.448	0	0	0	0	0	T	48492769	A	T	48492769	3	4	14	1	0	0	0	0	1	0	0	0	17553	188	7	5	463	5	ZAR1	4	48492769	Missense_Mutation	SNP	A	TCGA-OR-A5JH-01A-11D-A30A-10	44998105	48492769	142661507	18	3042										
ARL10	285598	hgsc.bcm.edu	37	chr5	175792605	175792605	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0149253731343284	1	1	0.520411549950216	0	0.704086214638527	1	1	0	ggccccttggtgctggcgctGggcggcgccgcggcggtgct	20	14	0	0	rs2303667		TCGA-OR-A5JH-01A-11D-A30A-10	TCGA-OR-A5JH-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4eaa9703-dace-478d-b1ea-7c326ad34362	da172edc-7af4-48d6-bbab-2cf091662641	.	ARL10-91	NM_173664	exon1	c.G39C	p.L13L	GGCGCTGGGCGGC	.	4	4	0	0	G|0.585;C|0.415	0	0	0	0	0	C	175792605	G	C	175792605	2	2	14	1	0	0	0	0	0	0	0	1	926	1335	47	3		3	ARL10	5	175792605	Silent	SNP	G	TCGA-OR-A5JH-01A-11D-A30A-10		175792605	5122655	19	3043										
MUC21	394263	bcgsc.ca	37	chr6	30954484	30954484	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0149253731343284	1	1	0.520411549950216	0	0.704086214638527	1	1	0	gcacaacctccagtggggccAgcacagccaccaactctgag	10	16	1	1	novel		TCGA-OR-A5JH-01A-11D-A30A-10	TCGA-OR-A5JH-10A-01D-A30A-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4eaa9703-dace-478d-b1ea-7c326ad34362	da172edc-7af4-48d6-bbab-2cf091662641	.	MUC21-92	NM_001010909	exon2	c.A532G	p.S178G	GGGGCCAGCACAG	.	240	15	286	4	.	0	0	0	0	0	G	30954484	A	G	30954484	3	3	14	1	0	0	0	0	1	0	0	0	10005	188	7	4	538	4	MUC21	6	30954484	Missense_Mutation	SNP	A	TCGA-OR-A5JH-01A-11D-A30A-10		30954484	140160583	20	3044										
HLA-C	3107	bcgsc.ca	37	chr6	31239407	31239407	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0149253731343284	1	1	0.520411549950216	0	0.704086214638527	1	1	0	tggttgtagtagccgcgcagGttccgcaggctcactcggtc	14	12	1	0	rs17408553	byfrequency	TCGA-OR-A5JH-01A-11D-A30A-10	TCGA-OR-A5JH-10A-01D-A30A-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4eaa9703-dace-478d-b1ea-7c326ad34362	da172edc-7af4-48d6-bbab-2cf091662641	.	HLA-C-90	NM_002117	exon2	c.C312A	p.N104K	GCGCAGGTTCCGC	.	202	7	201	1	G|0.602;T|0.398	0	0	0	0	0	T	31239407	G	T	31239407	3	4	14	1	0	0	0	0	1	0	0	0	7218	1252	44	3	816	3	HLA-C	6	31239407	Missense_Mutation	SNP	G	TCGA-OR-A5JH-01A-11D-A30A-10	284923	31239407	139875660	21	3045										
CUL9	23113	broad.mit.edu	37	chr6	43188511	43188511	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0149253731343284	1	1	0.520411549950216	0	0.704086214638527	1	1	0	aaggcgctcctgcgtggctaTgtggagagctgctccaacct	13	12	0	1	rs41274934	byfrequency	TCGA-OR-A5JH-01A-11D-A30A-10	TCGA-OR-A5JH-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4eaa9703-dace-478d-b1ea-7c326ad34362	da172edc-7af4-48d6-bbab-2cf091662641	.	CUL9-529	NM_015089	exon33	c.T6450C	p.Y2150Y	TGGCTATGTGGAG	.	92	3	98	0	T|0.999;C|0.001	0	0	0	0	0	C	43188511	T	C	43188511	2	2	14	1	0	0	0	0	0	0	0	1	4067	1471	51	4		4	CUL9	6	43188511	Silent	SNP	T	TCGA-OR-A5JH-01A-11D-A30A-10	11949104	43188511	127926556	22	3046										
HSP90AB1	3326	ucsc.edu	37	chr6	44221293	44221293	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0149253731343284	1	1	0.520411549950216	0	0.704086214638527	1	1	0	cctgatgagatcccccctctCgagggcgatgaggatgcgtc	13	13	1	3	rs147025760	byfrequency	TCGA-OR-A5JH-01A-11D-A30A-10	TCGA-OR-A5JH-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4eaa9703-dace-478d-b1ea-7c326ad34362	da172edc-7af4-48d6-bbab-2cf091662641	.	HSP90AB1-658	NM_007355	exon12	c.C2133T	p.L711L	CCCTCTCGAGGGC	.	152	24	146	8	C|0.960;T|0.040	0	0	0	0	0	T	44221293	C	T	44221293	2	4	14	1	0	0	0	0	0	0	0	1	7423	871	31	1		1	HSP90AB1	6	44221293	Silent	SNP	C	TCGA-OR-A5JH-01A-11D-A30A-10	1032782	44221293	126893774	23	3047										
TBX18	9096	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr6	85446964	85446964	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0149253731343284	1	1	0.520411549950216	0	0.704086214638527	1	1	0	ttgagggtgaggcctgagcgGgcacaggcagaatagtcagc	17	8	1	4	novel		TCGA-OR-A5JH-01A-11D-A30A-10	TCGA-OR-A5JH-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4eaa9703-dace-478d-b1ea-7c326ad34362	da172edc-7af4-48d6-bbab-2cf091662641	.	TBX18-73	NM_001080508	exon8	c.C1263A	p.A421A	TGAGCGGGCACAG	.	260	14	220	0	.	0	0	0	0	0	T	85446964	G	T	85446964	2	4	14	1	0	0	0	0	0	0	0	1	15690	1219	43	3		3	TBX18	6	85446964	Silent	SNP	G	TCGA-OR-A5JH-01A-11D-A30A-10	41225671	85446964	85668103	24	3048										
EIF2AK1	27102	broad.mit.edu	37	chr7	6078221	6078221	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0149253731343284	1	1	0.520411549950216	0	0.704086214638527	1	1	0	gtccacatactcccggccccGcttgtttctctcgactatcc	6	18	1	0	rs142287286		TCGA-OR-A5JH-01A-11D-A30A-10	TCGA-OR-A5JH-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4eaa9703-dace-478d-b1ea-7c326ad34362	da172edc-7af4-48d6-bbab-2cf091662641	.	EIF2AK1-408	NM_014413	exon10	c.C1201T	p.R401W	GGCCCCGCTTGTT	.	93	4	64	2	G|1.000;A|0.000	0	0	0	0	0	A	6078221	G	A	6078221	3	1	14	1	0	0	0	0	1	0	0	0	5007	1086	38	1	715	1	EIF2AK1	7	6078221	Missense_Mutation	SNP	G	TCGA-OR-A5JH-01A-11D-A30A-10		6078221	153060442	25	3049										
USP42	84132	hgsc.bcm.edu	37	chr7	6193521	6193521	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0149253731343284	1	1	0.520411549950216	0	0.704086214638527	1	1	0	caagaaggctccgccgccccGcgatcccggcacccccgcta	10	21	0	1	rs61729726	byfrequency	TCGA-OR-A5JH-01A-11D-A30A-10	TCGA-OR-A5JH-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4eaa9703-dace-478d-b1ea-7c326ad34362	da172edc-7af4-48d6-bbab-2cf091662641	.	USP42-659	NM_032172	exon15	c.G2336C	p.R779P	CGCCCCGCGATCC	.	24	11	3	0	G|0.456;C|0.544	0	0	0	0	0	C	6193521	G	C	6193521	3	2	14	1	0	0	0	0	1	0	0	0	17111	1087	38	2		2	USP42	7	6193521	Missense_Mutation	SNP	G	TCGA-OR-A5JH-01A-11D-A30A-10	115300	6193521	152945142	26	3050										
GARS	2617	hgsc.bcm.edu	37	chr7	30634630	30634630	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0149253731343284	1	1	0.520411549950216	0	0.704086214638527	1	1	0	ttagcccgaccctcgctcctGctccgccggtccctcagcgc	9	21	1	0	rs2529438	byfrequency	TCGA-OR-A5JH-01A-11D-A30A-10	TCGA-OR-A5JH-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4eaa9703-dace-478d-b1ea-7c326ad34362	da172edc-7af4-48d6-bbab-2cf091662641	.	GARS-91	NM_002047	exon1	c.G93C	p.L31L	GCTCCTGCTCCGC	.	14	7	2	0	G|0.889;C|0.111	0	0	0	0	0	C	30634630	G	C	30634630	2	2	14	1	0	0	0	0	0	0	0	1	6262	1306	46	3		3	GARS	7	30634630	Silent	SNP	G	TCGA-OR-A5JH-01A-11D-A30A-10	24441109	30634630	128504033	27	3051			1	9		2	2	32	N	G_C	6.709138e-05
GARS	2617	hgsc.bcm.edu	37	chr7	30634661	30634661	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0149253731343284	1	1	0.520411549950216	0	0.704086214638527	1	1	0	ccctcagcgcggcctcctgcCccccgatctccttgcccgcc	8	24	2	0	rs1049402	byfrequency	TCGA-OR-A5JH-01A-11D-A30A-10	TCGA-OR-A5JH-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4eaa9703-dace-478d-b1ea-7c326ad34362	da172edc-7af4-48d6-bbab-2cf091662641	.	GARS-91	NM_002047	exon1	c.C124G	p.P42A	TCCTGCCCCCCGA	.	11	10	0	0	C|0.329;G|0.671	0	0	0	0	0	G	30634661	C	G	30634661	3	3	14	1	0	0	0	0	1	0	0	0	6262	623	22	3	126	3	GARS	7	30634661	Missense_Mutation	SNP	C	TCGA-OR-A5JH-01A-11D-A30A-10	31	30634661	128504002	28	3052			1	9		2	2	32	N	G_C	6.709138e-05
PDE1C	5137	broad.mit.edu	37	chr7	31867930	31867930	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0149253731343284	1	1	0.520411549950216	0	0.704086214638527	1	1	0	ttgtgactgagcaaccatagTggactttcggtcacacagag	11	9	1	3	novel		TCGA-OR-A5JH-01A-11D-A30A-10	TCGA-OR-A5JH-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4eaa9703-dace-478d-b1ea-7c326ad34362	da172edc-7af4-48d6-bbab-2cf091662641	.	PDE1C-94	NM_001191058	exon13	c.A1441C	p.T481P	CCATAGTGGACTT	.	85	4	73	0	.	0	0	0	0	0	G	31867930	T	G	31867930	3	3	14	1	0	0	0	0	1	0	0	0	11664	1696	59	5	667	5	PDE1C	7	31867930	Missense_Mutation	SNP	T	TCGA-OR-A5JH-01A-11D-A30A-10	1233269	31867930	127270733	29	3053										
AVL9	23080	broad.mit.edu	37	chr7	32535342	32535343	+	Frame_Shift_Ins	INS	-	-	G													0.0149253731343284	1	1	0.520411549950216	0	0.704086214638527	1	1	0	tggagaaggccaggagaggcINSggggatggcgtcccccgggg					novel		TCGA-OR-A5JH-01A-11D-A30A-10	TCGA-OR-A5JH-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4eaa9703-dace-478d-b1ea-7c326ad34362	da172edc-7af4-48d6-bbab-2cf091662641	.	AVL9-90	NM_015060	exon1	c.21_22insG	p.G7fs	GAGAGGCGGGGAT	.	208	9	64	0	.	0	0	0	0	0	G	32535343	-	G	32535342	7	5	14	1	0	1	1	0	0	0	0	0	1229	755	27	0	23	0	AVL9	7	32535342	Frame_Shift_Ins	INS	-	TCGA-OR-A5JH-01A-11D-A30A-10	667412	32535342	126603321	30	3054										
RAMP3	10268	hgsc.bcm.edu	37	chr7	45197433	45197433	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0149253731343284	1	1	0.520411549950216	0	0.704086214638527	1	1	0	tgcggccggccagccatggaGactggagcgctgcggcgccc	17	15	0	1	rs67477213		TCGA-OR-A5JH-01A-11D-A30A-10	TCGA-OR-A5JH-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4eaa9703-dace-478d-b1ea-7c326ad34362	da172edc-7af4-48d6-bbab-2cf091662641	.	RAMP3-90	NM_005856	exon1	c.G6A	p.E2E	CATGGAGACTGGA	.	10	8	2	0	G|0.760;A|0.240	0	0	0	0	0	A	45197433	G	A	45197433	2	1	14	1	0	0	0	0	0	0	0	1	13058	933	33	3		3	RAMP3	7	45197433	Silent	SNP	G	TCGA-OR-A5JH-01A-11D-A30A-10	12662091	45197433	113941230	31	3055										
SCRIB	23513	hgsc.bcm.edu	37	chr8	144874554	144874554	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0149253731343284	1	1	0.520411549950216	0	0.704086214638527	1	1	0	ggggcgccacctcccaggggTgggggggacgccgggctctg	21	13	1	0	rs6991873		TCGA-OR-A5JH-01A-11D-A30A-10	TCGA-OR-A5JH-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4eaa9703-dace-478d-b1ea-7c326ad34362	da172edc-7af4-48d6-bbab-2cf091662641	.	SCRIB-228	NM_015356	exon32	c.A4350G	p.P1450P	CAGGGGTGGGGGG	.	8	8	0	0	T|0.010;C|0.990	0	0	0	0	0	C	144874554	T	C	144874554	2	2	14	1	0	0	0	0	0	0	0	1	13972	1683	59	4		4	SCRIB	8	144874554	Silent	SNP	T	TCGA-OR-A5JH-01A-11D-A30A-10		144874554	1489468	32	3056										
PLEC	5339	hgsc.bcm.edu	37	chr8	145001784	145001784	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0149253731343284	1	1	0.520411549950216	0	0.704086214638527	1	1	0	agcctgccagcgctcaagcaActgggcgacccgctcccgcc	11	19	1	0	rs3135109	byfrequency	TCGA-OR-A5JH-01A-11D-A30A-10	TCGA-OR-A5JH-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4eaa9703-dace-478d-b1ea-7c326ad34362	da172edc-7af4-48d6-bbab-2cf091662641	.	PLEC-141	NM_201380	exon27	c.T3961C	p.L1321L	CAAGCAACTGGGC	.	25	25	1	0	G|0.246;A|0.754	0	0	0	0	0	G	145001784	A	G	145001784	2	3	14	1	0	0	0	0	0	0	0	1	12081	40	2	4		4	PLEC	8	145001784	Silent	SNP	A	TCGA-OR-A5JH-01A-11D-A30A-10	127230	145001784	1362238	33	3057										
ZNF517	340385	hgsc.bcm.edu	37	chr8	146033347	146033347	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0149253731343284	1	1	0.520411549950216	0	0.704086214638527	1	1	0	gggtgcccaggacggcggcgTggggcagggcgccctgctcg	21	13	0	0	rs2976653		TCGA-OR-A5JH-01A-11D-A30A-10	TCGA-OR-A5JH-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4eaa9703-dace-478d-b1ea-7c326ad34362	da172edc-7af4-48d6-bbab-2cf091662641	.	ZNF517-90	NM_213605	exon5	c.T1046C	p.V349A	GCGGCGTGGGGCA	.	9	9	0	0	G|0.992;C|0.006	0	0	0	0	0	C	146033347	T	C	146033347	3	2	14	1	0	0	0	0	1	0	0	0	17998	1696	59	4	1060	4	ZNF517	8	146033347	Missense_Mutation	SNP	T	TCGA-OR-A5JH-01A-11D-A30A-10	1031563	146033347	330675	34	3058										
ERMP1	79956	hgsc.bcm.edu	37	chr9	5832719	5832719	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0149253731343284	1	1	0.520411549950216	0	0.704086214638527	1	1	0	agcgcgtcgaactccccgcgGtgtccagcggccccgcgtag	14	17	0	0	rs13302671	byfrequency	TCGA-OR-A5JH-01A-11D-A30A-10	TCGA-OR-A5JH-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4eaa9703-dace-478d-b1ea-7c326ad34362	da172edc-7af4-48d6-bbab-2cf091662641	.	ERMP1-69	NM_024896	exon1	c.C309G	p.H103Q	CCCGCGGTGTCCA	.	15	6	6	0	G|0.981;C|0.019	0	0	0	0	0	C	5832719	G	C	5832719	3	2	14	1	0	0	0	0	1	0	0	0	5249	1252	44	3	2465	3	ERMP1	9	5832719	Missense_Mutation	SNP	G	TCGA-OR-A5JH-01A-11D-A30A-10		5832719	135380712	35	3059										
SPTAN1	6709	broad.mit.edu	37	chr9	131371246	131371246	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0149253731343284	1	1	0.520411549950216	0	0.704086214638527	1	1	0	tttctagccggcgcaatgagGtcttggacaggtgggtgtcc	15	9	2	1	novel		TCGA-OR-A5JH-01A-11D-A30A-10	TCGA-OR-A5JH-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4eaa9703-dace-478d-b1ea-7c326ad34362	da172edc-7af4-48d6-bbab-2cf091662641	.	SPTAN1-158	NM_003127	exon35	c.G4585T	p.V1529F	AATGAGGTCTTGG	.	187	6	175	0	.	0	0	0	0	0	T	131371246	G	T	131371246	3	4	14	1	0	0	0	0	1	0	0	0	15154	1261	44	3	4719	3	SPTAN1	9	131371246	Missense_Mutation	SNP	G	TCGA-OR-A5JH-01A-11D-A30A-10	125538527	131371246	9842185	36	3060										
SNAPC4	6621	bcgsc.ca	37	chr9	139273288	139273288	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0149253731343284	1	1	0.520411549950216	0	0.704086214638527	1	1	0	gaagcagcaggggctgtgccCtcggcctctgagaagacagg	16	11	1	2	rs3829112	byfrequency	TCGA-OR-A5JH-01A-11D-A30A-10	TCGA-OR-A5JH-10A-01D-A30A-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4eaa9703-dace-478d-b1ea-7c326ad34362	da172edc-7af4-48d6-bbab-2cf091662641	.	SNAPC4-90	NM_003086	exon21	c.G2991A	p.E997E	TGTGCCCTCGGCC	.	250	8	200	3	C|0.845;T|0.155	0	0	0	0	0	T	139273288	C	T	139273288	2	4	14	1	0	0	0	0	0	0	0	1	14872	680	24	3		3	SNAPC4	9	139273288	Silent	SNP	C	TCGA-OR-A5JH-01A-11D-A30A-10	7902042	139273288	1940143	37	3061										
SORBS1	10580	ucsc.edu;bcgsc.ca	37	chr10	97096405	97096405	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0149253731343284	1	1	0.520411549950216	0	0.704086214638527	1	1	0	cgggccggctctcctcagggGtgttgagatctgagagtctc	15	11	4	2	novel		TCGA-OR-A5JH-01A-11D-A30A-10	TCGA-OR-A5JH-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4eaa9703-dace-478d-b1ea-7c326ad34362	da172edc-7af4-48d6-bbab-2cf091662641	.	SORBS1-155	NM_001034954	exon28	c.C3512A	p.T1171N	TCAGGGGTGTTGA	.	44	5	47	1	.	0	0	0	0	0	T	97096405	G	T	97096405	3	4	14	1	0	0	0	0	1	0	0	0	14962	1261	44	3	446	3	SORBS1	10	97096405	Missense_Mutation	SNP	G	TCGA-OR-A5JH-01A-11D-A30A-10		97096405	38438342	38	3062										
CNNM1	26507	bcgsc.ca	37	chr10	101147692	101147692	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0149253731343284	1	1	0.520411549950216	0	0.704086214638527	1	1	0	cactaaggcccccacaacccGgggcacaccccagaccccta	7	21	0	1	rs2298316	byfrequency	TCGA-OR-A5JH-01A-11D-A30A-10	TCGA-OR-A5JH-10A-01D-A30A-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4eaa9703-dace-478d-b1ea-7c326ad34362	da172edc-7af4-48d6-bbab-2cf091662641	.	CNNM1-68	NM_020348	exon8	c.G2456A	p.R819Q	CAACCCGGGGCAC	.	247	8	247	1	G|0.935;A|0.065	0	0	0	0	0	A	101147692	G	A	101147692	3	1	14	1	0	0	0	0	1	0	0	0	3618	1116	39	1	2486	1	CNNM1	10	101147692	Missense_Mutation	SNP	G	TCGA-OR-A5JH-01A-11D-A30A-10	4051287	101147692	34387055	39	3063										
IGSF22	283284	broad.mit.edu;bcgsc.ca	37	chr11	18736089	18736089	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0149253731343284	1	1	0.520411549950216	0	0.704086214638527	1	1	0	acaccctccaccttctcgtcAttcagcactacacacaactc	2	19	3	0	novel		TCGA-OR-A5JH-01A-11D-A30A-10	TCGA-OR-A5JH-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4eaa9703-dace-478d-b1ea-7c326ad34362	da172edc-7af4-48d6-bbab-2cf091662641	.	IGSF22-140	NM_173588	exon12	c.T1614C	p.N538N	CTCGTCATTCAGC	.	169	11	156	1	.	0	0	0	0	0	G	18736089	A	G	18736089	2	3	14	1	0	0	0	0	0	0	0	1	7621	214	8	4		4	IGSF22	11	18736089	Silent	SNP	A	TCGA-OR-A5JH-01A-11D-A30A-10		18736089	116270427	40	3064										
OR5D13	390142	broad.mit.edu	37	chr11	55541042	55541042	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0149253731343284	1	1	0.520411549950216	0	0.704086214638527	1	1	0	tacacagtcactgtagtgggGaacttgggcatgataataat	11	6	1	1	novel		TCGA-OR-A5JH-01A-11D-A30A-10	TCGA-OR-A5JH-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4eaa9703-dace-478d-b1ea-7c326ad34362	da172edc-7af4-48d6-bbab-2cf091662641	.	OR5D13-71	NM_001001967	exon1	c.G129A	p.G43G	AGTGGGGAACTTG	.	105	4	145	0	.	0	0	0	0	0	A	55541042	G	A	55541042	2	1	14	1	0	0	0	0	0	0	0	1	11183	1161	41	3		3	OR5D13	11	55541042	Silent	SNP	G	TCGA-OR-A5JH-01A-11D-A30A-10	36804953	55541042	79465474	41	3065										
RAB3IL1	5866	broad.mit.edu	37	chr11	61672084	61672084	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0149253731343284	1	1	0.520411549950216	0	0.704086214638527	1	1	0	tctgcgaagccaccggctcaAtggtgagcgtgttgtcctcc	12	13	2	1	novel		TCGA-OR-A5JH-01A-11D-A30A-10	TCGA-OR-A5JH-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4eaa9703-dace-478d-b1ea-7c326ad34362	da172edc-7af4-48d6-bbab-2cf091662641	.	RAB3IL1-228	NM_013401	exon7	c.T833C	p.I278T	GGCTCAATGGTGA	.	208	6	202	0	.	0	0	0	0	0	G	61672084	A	G	61672084	3	3	14	1	0	0	0	0	1	0	0	0	12972	101	4	4	331	4	RAB3IL1	11	61672084	Missense_Mutation	SNP	A	TCGA-OR-A5JH-01A-11D-A30A-10	6131042	61672084	73334432	42	3066										
GPR137	56834	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	64054094	64054094	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0149253731343284	1	1	0.520411549950216	0	0.704086214638527	1	1	0	gacagctgcctacaccacccTgtatgccctgctcttcttct	6	17	3	0	novel		TCGA-OR-A5JH-01A-11D-A30A-10	TCGA-OR-A5JH-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4eaa9703-dace-478d-b1ea-7c326ad34362	da172edc-7af4-48d6-bbab-2cf091662641	.	GPR137-68	NM_001170726	exon3	c.T272A	p.L91Q	CCACCCTGTATGC	.	108	38	127	0	.	0	0	0	0	0	A	64054094	T	A	64054094	3	1	14	1	0	0	0	0	1	0	0	0	6665	1580	55	5	282	5	GPR137	11	64054094	Missense_Mutation	SNP	T	TCGA-OR-A5JH-01A-11D-A30A-10	2382010	64054094	70952422	43	3067										
EFEMP2	30008	broad.mit.edu;bcgsc.ca	37	chr11	65638718	65638718	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0149253731343284	1	1	0.520411549950216	0	0.704086214638527	1	1	0	tggtggcgggggtccctcgcCgtgtaggtcgttgatgacgg	19	9	0	2	rs2234462	byfrequency	TCGA-OR-A5JH-01A-11D-A30A-10	TCGA-OR-A5JH-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4eaa9703-dace-478d-b1ea-7c326ad34362	da172edc-7af4-48d6-bbab-2cf091662641	.	EFEMP2-91	NM_016938	exon4	c.G277A	p.G93S	CCTCGCCGTGTAG	.	176	8	221	2	C|0.998;T|0.002	0	0	0	0	0	T	65638718	C	T	65638718	3	4	14	1	0	0	0	0	1	0	0	0	4953	652	23	1	1086	1	EFEMP2	11	65638718	Missense_Mutation	SNP	C	TCGA-OR-A5JH-01A-11D-A30A-10	1584624	65638718	69367798	44	3068										
CST6	1474	hgsc.bcm.edu	37	chr11	65779590	65779590	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0149253731343284	1	1	0.520411549950216	0	0.704086214638527	1	1	0	ctcctggcgctgccacgcgaCgcccgggcccggccgcagga	15	19	0	0	rs1131544		TCGA-OR-A5JH-01A-11D-A30A-10	TCGA-OR-A5JH-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4eaa9703-dace-478d-b1ea-7c326ad34362	da172edc-7af4-48d6-bbab-2cf091662641	.	CST6-523	NM_001323	exon1	c.C75T	p.D25D	ACGCGACGCCCGG	.	10	4	0	0	C|0.921;T|0.079	0	0	0	0	0	T	65779590	C	T	65779590	2	4	14	1	0	0	0	0	0	0	0	1	3982	535	19	1		1	CST6	11	65779590	Silent	SNP	C	TCGA-OR-A5JH-01A-11D-A30A-10	140872	65779590	69226926	45	3069										
SPTBN2	6712	broad.mit.edu	37	chr11	66472762	66472762	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0149253731343284	1	1	0.520411549950216	0	0.704086214638527	1	1	0	tgtcggctgaggccaggaggTgctgctgctcccgcacccag	15	14	0	1	novel		TCGA-OR-A5JH-01A-11D-A30A-10	TCGA-OR-A5JH-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4eaa9703-dace-478d-b1ea-7c326ad34362	da172edc-7af4-48d6-bbab-2cf091662641	.	SPTBN2-155	NM_006946	exon14	c.A1985C	p.H662P	AGGAGGTGCTGCT	.	71	15	31	4	.	0	0	0	0	0	G	66472762	T	G	66472762	3	3	14	1	0	0	0	0	1	0	0	0	15157	1696	59	5	5283	5	SPTBN2	11	66472762	Missense_Mutation	SNP	T	TCGA-OR-A5JH-01A-11D-A30A-10	693172	66472762	68533754	46	3070										
UNC93B1	81622	broad.mit.edu	37	chr11	67763107	67763107	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0149253731343284	1	1	0.520411549950216	0	0.704086214638527	1	1	0	agtccagtcttgttcagggcActgcccacaccccaaagggc	10	15	2	0	novel		TCGA-OR-A5JH-01A-11D-A30A-10	TCGA-OR-A5JH-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4eaa9703-dace-478d-b1ea-7c326ad34362	da172edc-7af4-48d6-bbab-2cf091662641	.	.	.	.	.	.	CAGGGCACTGCCC	.	109	4	89	1	.	0	0	0	0	0	G	67763107	A	G	67763107	2	3	14	1	0	0	0	0	0	0	0	1	17035	156	6	4		4	UNC93B1	11	67763107	Silent	SNP	A	TCGA-OR-A5JH-01A-11D-A30A-10	1290345	67763107	67243409	47	3071										
BUD13	84811	bcgsc.ca	37	chr11	116633825	116633825	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0149253731343284	1	1	0.520411549950216	0	0.704086214638527	1	1	0	cctctgaggggagaaggatcCggggtgtcatgacgggccct	17	10	2	3	rs918144	byfrequency	TCGA-OR-A5JH-01A-11D-A30A-10	TCGA-OR-A5JH-10A-01D-A30A-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4eaa9703-dace-478d-b1ea-7c326ad34362	da172edc-7af4-48d6-bbab-2cf091662641	.	BUD13-154	NM_001159736	exon4	c.G480A	p.P160P	AGGATCCGGGGTG	.	119	5	96	0	C|0.470;T|0.530	0	0	0	0	0	T	116633825	C	T	116633825	2	4	14	1	0	0	0	0	0	0	0	1	1576	639	23	1		1	BUD13	11	116633825	Silent	SNP	C	TCGA-OR-A5JH-01A-11D-A30A-10	48870718	116633825	18372691	48	3072										
ATN1	1822	ucsc.edu	37	chr12	7045912	7045912	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0149253731343284	1	1	0.520411549950216	0	0.704086214638527	1	1	0	cagcagcagcagcagcagcaGcagcagcagcagcagcagca	13	14	0	0	rs144280633	byfrequency	TCGA-OR-A5JH-01A-11D-A30A-10	TCGA-OR-A5JH-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4eaa9703-dace-478d-b1ea-7c326ad34362	da172edc-7af4-48d6-bbab-2cf091662641	.	ATN1-139	NM_001007026	exon5	c.G1482A	p.Q494Q	GCAGCAGCAGCAG	.	157	24	156	2	G|0.972;A|0.028	0	0	0	0	0	A	7045912	G	A	7045912	2	1	14	1	0	0	0	0	0	0	0	1	1112	962	34	3		3	ATN1	12	7045912	Silent	SNP	G	TCGA-OR-A5JH-01A-11D-A30A-10		7045912	126805983	49	3073										
KRT81	3887	broad.mit.edu	37	chr12	52680108	52680108	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0149253731343284	1	1	0.520411549950216	0	0.704086214638527	1	1	0	ataccacaggagcccacgccGcaggaaccccctccgcaggt	10	18	0	0	novel		TCGA-OR-A5JH-01A-11D-A30A-10	TCGA-OR-A5JH-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4eaa9703-dace-478d-b1ea-7c326ad34362	da172edc-7af4-48d6-bbab-2cf091662641	.	KRT81-90	NM_002281	exon9	c.C1449A	p.C483X	CACGCCGCAGGAA	.	247	6	176	0	.	0	0	0	0	0	T	52680108	G	T	52680108	4	4	14	1	0	0	0	0	0	1	0	0	8516	1079	38	2	72	2	KRT81	12	52680108	Nonsense_Mutation	SNP	G	TCGA-OR-A5JH-01A-11D-A30A-10	45634196	52680108	81171787	50	3074										
C14orf39	317761	ucsc.edu	37	chr14	60932752	60932752	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0149253731343284	1	1	0.520411549950216	0	0.704086214638527	1	1	0	tggcaagctttgactgcttcGcagaactttcttcttttata	7	9	2	2	rs12586711	byfrequency	TCGA-OR-A5JH-01A-11D-A30A-10	TCGA-OR-A5JH-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4eaa9703-dace-478d-b1ea-7c326ad34362	da172edc-7af4-48d6-bbab-2cf091662641	.	C14orf39-94	NM_174978	exon11	c.C917T	p.A306V	TGCTTCGCAGAAC	.	12	7	11	0	G|0.800;A|0.200	0	0	0	0	0	A	60932752	G	A	60932752	3	1	14	1	0	0	0	0	1	0	0	0	1776	1087	38	1	878	1	C14orf39	14	60932752	Missense_Mutation	SNP	G	TCGA-OR-A5JH-01A-11D-A30A-10		60932752	46416788	51	3075										
SPTB	6710	bcgsc.ca	37	chr14	65242044	65242044	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0149253731343284	1	1	0.520411549950216	0	0.704086214638527	1	1	0	tcctggcagtcgatctccgcCgcctccaccagctgctgccc	9	20	1	0	rs184528	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-OR-A5JH-01A-11D-A30A-10	TCGA-OR-A5JH-10A-01D-A30A-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4eaa9703-dace-478d-b1ea-7c326ad34362	da172edc-7af4-48d6-bbab-2cf091662641	.	SPTB-100	NM_000347	exon22	c.G4641A	p.A1547A	CTCCGCCGCCTCC	.	121	6	128	1	C|0.642;T|0.358	0	0	0	0	0	T	65242044	C	T	65242044	2	4	14	1	0	0	0	0	0	0	0	1	15155	639	23	1		1	SPTB	14	65242044	Silent	SNP	C	TCGA-OR-A5JH-01A-11D-A30A-10	4309292	65242044	42107496	52	3076										
CKB	1152	hgsc.bcm.edu	37	chr14	103988180	103988180	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0149253731343284	1	1	0.520411549950216	0	0.704086214638527	1	1	0	accgcgagcttctcgatggcGcggcgctccccgcggctgca	14	17	1	0	rs1136165	byfrequency	TCGA-OR-A5JH-01A-11D-A30A-10	TCGA-OR-A5JH-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4eaa9703-dace-478d-b1ea-7c326ad34362	da172edc-7af4-48d6-bbab-2cf091662641	.	CKB-115	NM_001823	exon4	c.C456A	p.R152R	GATGGCGCGGCGC	.	8	8	0	0	G|0.327;T|0.673	0	0	0	0	0	T	103988180	G	T	103988180	2	4	14	1	0	0	0	0	0	0	0	1	3452	1074	38	2		2	CKB	14	103988180	Silent	SNP	G	TCGA-OR-A5JH-01A-11D-A30A-10	38746136	103988180	3361360	53	3077										
KIF26A	26153	hgsc.bcm.edu	37	chr14	104644099	104644099	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0149253731343284	1	1	0.520411549950216	0	0.704086214638527	1	1	0	caccacagcggtggcagcagTggctatgagagcctgcggcg	16	12	0	1	rs2497297	byfrequency	TCGA-OR-A5JH-01A-11D-A30A-10	TCGA-OR-A5JH-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4eaa9703-dace-478d-b1ea-7c326ad34362	da172edc-7af4-48d6-bbab-2cf091662641	.	KIF26A-24	NM_015656	exon12	c.T4974C	p.S1658S	CAGCAGTGGCTAT	.	12	10	4	0	T|0.603;C|0.397	0	0	0	0	0	C	104644099	T	C	104644099	2	2	14	1	0	0	0	0	0	0	0	1	8315	1693	59	4		4	KIF26A	14	104644099	Silent	SNP	T	TCGA-OR-A5JH-01A-11D-A30A-10	655919	104644099	2705441	54	3078										
TYRO3	7301	bcgsc.ca	37	chr15	41862356	41862356	+	Splice_Site	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0149253731343284	1	1	0.520411549950216	0	0.704086214638527	1	1	0	ggaaagagacgcggtttgggTaaggggatggggatgtggag	22	2	0	1	rs149022093	byfrequency	TCGA-OR-A5JH-01A-11D-A30A-10	TCGA-OR-A5JH-10A-01D-A30A-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4eaa9703-dace-478d-b1ea-7c326ad34362	da172edc-7af4-48d6-bbab-2cf091662641	.	TYRO3-1388	NM_006293	exon10	c.1382+2T>C	.	TTTGGGTAAGGGG	.	106	8	151	2	T|0.999;C|0.001	0	0	0	0	0	C	41862356	T	C	41862356	5	2	14	1	0	0	0	0	0	0	1	0	16852	1652	57	4	1422	4	TYRO3	15	41862356	Splice_Site	SNP	T	TCGA-OR-A5JH-01A-11D-A30A-10		41862356	60669036	55	3079										
MEFV	4210	hgsc.bcm.edu	37	chr16	3304573	3304573	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0149253731343284	1	1	0.520411549950216	0	0.704086214638527	1	1	0	tgcgcgtccaggccctccgaGgccttctctctgcgtttgct	11	16	2	0	rs224223	byfrequency	TCGA-OR-A5JH-01A-11D-A30A-10	TCGA-OR-A5JH-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4eaa9703-dace-478d-b1ea-7c326ad34362	da172edc-7af4-48d6-bbab-2cf091662641	.	MEFV-228	NM_000243	exon2	c.C495A	p.A165A	CTCCGAGGCCTTC	.	10	6	1	0	G|0.570;T|0.430	0	0	0	0	0	T	3304573	G	T	3304573	2	4	14	1	0	0	0	0	0	0	0	1	9487	987	35	3		3	MEFV	16	3304573	Silent	SNP	G	TCGA-OR-A5JH-01A-11D-A30A-10		3304573	87050180	56	3080										
ZFPM1	161882	hgsc.bcm.edu	37	chr16	88599697	88599705	+	In_Frame_Del	DEL	AGCCTCTGG	AGCCTCTGG	-													0.0149253731343284	1	1	0.520411549950216	0	0.704086214638527	1	1	0	caacggagaggccagagcggAgcctctggcccagaatggag					novel		TCGA-OR-A5JH-01A-11D-A30A-10	TCGA-OR-A5JH-10A-01D-A30A-10	AGCCTCTGG	AGCCTCTGG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4eaa9703-dace-478d-b1ea-7c326ad34362	da172edc-7af4-48d6-bbab-2cf091662641	.	ZFPM1-90	NM_153813	exon10	c.1331_1339del	p.444_447del	GAGCGGAGCCTCT	.	21	0	2	0	.	0	0	0	0	0	-	88599705	AGCCTCTGG	-	88599697	7	5	14	1	0	1	0	1	0	0	0	0	17694	304	11	0	1369	0	ZFPM1	16	88599697	In_Frame_Del	DEL	AGCCTCTGG	TCGA-OR-A5JH-01A-11D-A30A-10	85295124	88599697	1755056	57	3081										
SEPT9	10801	broad.mit.edu	37	chr17	75483522	75483522	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0149253731343284	1	1	0.520411549950216	0	0.704086214638527	1	1	0	ccagggcagagcggcttgggTaaatccaccttaatcaacac	10	12	1	1	novel		TCGA-OR-A5JH-01A-11D-A30A-10	TCGA-OR-A5JH-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4eaa9703-dace-478d-b1ea-7c326ad34362	da172edc-7af4-48d6-bbab-2cf091662641	.	SEPT9-659	NM_001113491	exon5	c.T930G	p.G310G	CTTGGGTAAATCC	.	216	26	184	10	.	0	0	0	0	0	G	75483522	T	G	75483522	2	3	14	1	0	0	0	0	0	0	0	1	14106	1625	57	5		5	SEPT9	17	75483522	Silent	SNP	T	TCGA-OR-A5JH-01A-11D-A30A-10		75483522	5711688	58	3082										
AATK	9625	hgsc.bcm.edu	37	chr17	79096115	79096115	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0149253731343284	1	1	0.520411549950216	0	0.704086214638527	1	1	0	gcagtcagggtcgtggccggCggcgggtgcggcctcctcta	18	13	2	0	rs61738821	byfrequency	TCGA-OR-A5JH-01A-11D-A30A-10	TCGA-OR-A5JH-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4eaa9703-dace-478d-b1ea-7c326ad34362	da172edc-7af4-48d6-bbab-2cf091662641	.	AATK-933	NM_001080395	exon11	c.G1621A	p.A541T	GGCCGGCGGCGGG	.	9	7	0	0	C|0.850;T|0.150	0	0	0	0	0	T	79096115	C	T	79096115	3	4	14	1	0	0	0	0	1	0	0	0	26	768	27	1	2519	1	AATK	17	79096115	Missense_Mutation	SNP	C	TCGA-OR-A5JH-01A-11D-A30A-10	3612593	79096115	2099095	59	3083										
PTPN2	5771	broad.mit.edu	37	chr18	12794285	12794285	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0149253731343284	1	1	0.520411549950216	0	0.704086214638527	1	1	0	aaaattaattgtttatagggCattttgctgaaaaaacagtg	8	3	0	1	novel		TCGA-OR-A5JH-01A-11D-A30A-10	TCGA-OR-A5JH-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4eaa9703-dace-478d-b1ea-7c326ad34362	da172edc-7af4-48d6-bbab-2cf091662641	.	PTPN2-652	NM_002828	exon9	c.G1240T	p.A414S	ATAGGGCATTTTG	.	83	8	69	1	.	0	0	0	0	0	A	12794285	C	A	12794285	3	1	14	1	0	0	0	0	1	0	0	0	12818	710	25	3	37	3	PTPN2	18	12794285	Missense_Mutation	SNP	C	TCGA-OR-A5JH-01A-11D-A30A-10		12794285	65282963	60	3084										
DOT1L	84444	hgsc.bcm.edu	37	chr19	2226847	2226847	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0149253731343284	1	1	0.520411549950216	0	0.704086214638527	1	1	0	gaagcctcctcagcggccccGgcctggccccggcggcgtcc	14	20	1	0	rs113842228	byfrequency	TCGA-OR-A5JH-01A-11D-A30A-10	TCGA-OR-A5JH-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4eaa9703-dace-478d-b1ea-7c326ad34362	da172edc-7af4-48d6-bbab-2cf091662641	.	DOT1L-132	NM_032482	exon27	c.G4327T	p.G1443C	GGCCCCGGCCTGG	.	7	5	1	0	G|0.970;T|0.030	0	0	0	0	0	T	2226847	G	T	2226847	3	4	14	1	0	0	0	0	1	0	0	0	4720	1116	39	2	4433	2	DOT1L	19	2226847	Missense_Mutation	SNP	G	TCGA-OR-A5JH-01A-11D-A30A-10		2226847	56902136	61	3085										
OR10H5	284433	bcgsc.ca	37	chr19	15905661	15905661	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0149253731343284	1	1	0.520411549950216	0	0.704086214638527	1	1	0	gaagcccaaaggtccccagtCtccggaaggagacaccttga	11	13	1	2	rs67455341	byfrequency	TCGA-OR-A5JH-01A-11D-A30A-10	TCGA-OR-A5JH-10A-01D-A30A-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4eaa9703-dace-478d-b1ea-7c326ad34362	da172edc-7af4-48d6-bbab-2cf091662641	.	OR10H5-69	NM_001004466	exon1	c.C803A	p.S268Y	CCCAGTCTCCGGA	.	350	12	280	1	C|0.733;A|0.267	0	0	0	0	0	A	15905661	C	A	15905661	3	1	14	1	0	0	0	0	1	0	0	0	10938	913	32	3	805	3	OR10H5	19	15905661	Missense_Mutation	SNP	C	TCGA-OR-A5JH-01A-11D-A30A-10	13678814	15905661	43223322	62	3086										
ZNF626	199777	hgsc.bcm.edu;bcgsc.ca	37	chr19	20807300	20807300	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0149253731343284	1	1	0.520411549950216	0	0.704086214638527	1	1	0	aggttagaggagcacttaaaAgctttgccacattcttcaca	8	9	2	1	rs4808252		TCGA-OR-A5JH-01A-11D-A30A-10	TCGA-OR-A5JH-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4eaa9703-dace-478d-b1ea-7c326ad34362	da172edc-7af4-48d6-bbab-2cf091662641	.	ZNF626-515	NM_001076675	exon4	c.T1383C	p.A461A	CTTAAAAGCTTTG	.	29	4	34	0	A|0.500;G|0.500	0	0	0	0	0	G	20807300	A	G	20807300	2	3	14	1	0	0	0	0	0	0	0	1	18087	59	3	4		4	ZNF626	19	20807300	Silent	SNP	A	TCGA-OR-A5JH-01A-11D-A30A-10	4901639	20807300	38321683	63	3087										
ZNF568	374900	broad.mit.edu	37	chr19	37441073	37441073	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0149253731343284	1	1	0.520411549950216	0	0.704086214638527	1	1	0	cctatgaatgtaaggaatgtGggaaatccttcagccagaag	11	7	1	2	novel		TCGA-OR-A5JH-01A-11D-A30A-10	TCGA-OR-A5JH-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4eaa9703-dace-478d-b1ea-7c326ad34362	da172edc-7af4-48d6-bbab-2cf091662641	.	ZNF568-136	NM_198539	exon7	c.G1018T	p.G340W	GAATGTGGGAAAT	.	96	4	47	0	.	0	0	0	0	0	T	37441073	G	T	37441073	3	4	14	1	0	0	0	0	1	0	0	0	18036	1348	47	3	1036	3	ZNF568	19	37441073	Missense_Mutation	SNP	G	TCGA-OR-A5JH-01A-11D-A30A-10	16633773	37441073	21687910	64	3088										
ISX	91464	broad.mit.edu;bcgsc.ca	37	chr22	35480438	35480438	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0149253731343284	1	1	0.520411549950216	0	0.704086214638527	1	1	0	aagattggcaacctgggggcTccacagcagctgagtgaagc	14	10	0	3	novel		TCGA-OR-A5JH-01A-11D-A30A-10	TCGA-OR-A5JH-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4eaa9703-dace-478d-b1ea-7c326ad34362	da172edc-7af4-48d6-bbab-2cf091662641	.	ISX-95	NM_001008494	exon3	c.T444G	p.A148A	GGGGGCTCCACAG	.	107	8	78	1	.	0	0	0	0	0	G	35480438	T	G	35480438	2	3	14	1	0	0	0	0	0	0	0	1	7886	1538	54	5		5	ISX	22	35480438	Silent	SNP	T	TCGA-OR-A5JH-01A-11D-A30A-10		35480438	15824128	65	3089										
AR	367	hgsc.bcm.edu	37	chrX	66765159	66765182	+	In_Frame_Del	DEL	GCAGCAGCAGCAGCAGCAGCAGCA	GCAGCAGCAGCAGCAGCAGCAGCA	-													0.0149253731343284	1	1	0.520411549950216	0	0.704086214638527	1	1	0	ggcgccagtttgctgctgctGcagcagcagcagcagcagca					rs72181988	alternate_allele	TCGA-OR-A5JH-01A-11D-A30A-10	TCGA-OR-A5JH-10A-01D-A30A-10	GCAGCAGCAGCAGCAGCAGCAGCA	GCAGCAGCAGCAGCAGCAGCAGCA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4eaa9703-dace-478d-b1ea-7c326ad34362	da172edc-7af4-48d6-bbab-2cf091662641	.	AR-661	NM_000044	exon1	c.171_194del	p.57_65del	GCTGCTGCAGCAG	.	118	24	60	0	.	0	0	0	0	0	-	66765182	GCAGCAGCAGCAGCAGCAGCAGCA	-	66765159	7	5	14	1	0	1	0	1	0	0	0	0	836	1306	46	0	173	0	AR	23	66765159	In_Frame_Del	DEL	GCAGCAGCAGCAGCAGCAGCAGCA	TCGA-OR-A5JH-01A-11D-A30A-10		66765159	88505401	66	3090										
GPRASP2	114928	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chrX	101971094	101971094	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0149253731343284	1	1	0.520411549950216	0	0.704086214638527	1	1	0	aggaaaagtccagtttggggGctgtggccagagaagaggcc	17	7	0	2	novel		TCGA-OR-A5JH-01A-11D-A30A-10	TCGA-OR-A5JH-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4eaa9703-dace-478d-b1ea-7c326ad34362	da172edc-7af4-48d6-bbab-2cf091662641	.	GPRASP2-131	NM_138437	exon4	c.G1297T	p.A433S	TTGGGGGCTGTGG	.	204	12	132	0	.	0	0	0	0	0	T	101971094	G	T	101971094	3	4	14	1	0	0	0	0	1	0	0	0	6744	1203	42	3	1299	3	GPRASP2	23	101971094	Missense_Mutation	SNP	G	TCGA-OR-A5JH-01A-11D-A30A-10	35205935	101971094	53299466	67	3091										
PLXNB3	5365	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	153032639	153032639	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0149253731343284	1	1	0.520411549950216	0	0.704086214638527	1	1	0	actgacaatgccaaccagctGctgctggtgagcagccgcgc	12	14	0	2	novel		TCGA-OR-A5JH-01A-11D-A30A-10	TCGA-OR-A5JH-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4eaa9703-dace-478d-b1ea-7c326ad34362	da172edc-7af4-48d6-bbab-2cf091662641	.	PLXNB3-130	NM_001163257	exon4	c.G426A	p.L142L	CCAGCTGCTGCTG	.	151	38	72	1	.	0	0	0	0	0	A	153032639	G	A	153032639	2	1	14	1	0	0	0	0	0	0	0	1	12154	1306	46	3		3	PLXNB3	23	153032639	Silent	SNP	G	TCGA-OR-A5JH-01A-11D-A30A-10	51061545	153032639	2237921	68	3092										
TAS1R3	83756	bcgsc.ca	37	chr1	1268159	1268159	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0294117647058824	2	1	0.606012658227848	0.881472957422325	0.46172393007836	1	1	0	tgcaacgcctcaggctgcccCgcgcaggaccccgtgaagcc	12	18	1	1	rs3813210	byfrequency	TCGA-OR-A5JI-01A-11D-A29I-10	TCGA-OR-A5JI-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3635255-1c8d-4532-b4ff-00d04a20ff79	6477b685-8285-40b9-ab7a-8faf6afd602e	.	TAS1R3-22	NM_152228	exon3	c.C1248T	p.P416P	CTGCCCCGCGCAG	.	129	5	87	0	C|0.874;T|0.126	4	4	0	0	0	T	1268159	C	T	1268159	2	4	15	1	0	0	0	0	0	0	0	1	15601	639	23	1		1	TAS1R3	1	1268159	Silent	SNP	C	TCGA-OR-A5JI-01A-11D-A29I-10		1268159	247982462	1	3093										
EVI5	7813	hgsc.bcm.edu	37	chr1	93091457	93091457	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0294117647058824	2	1	0.606012658227848	0.881472957422325	0.46172393007836	1	1	0	tgagttcttcctgaagccttGcaatattattctcatcagga	7	9	3	2	novel		TCGA-OR-A5JI-01A-11D-A29I-10	TCGA-OR-A5JI-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3635255-1c8d-4532-b4ff-00d04a20ff79	6477b685-8285-40b9-ab7a-8faf6afd602e	.	EVI5-136	NM_005665	exon13	c.C1514A	p.A505E	AGCCTTGCAATAT	.	99	5	109	0	.	0	0	0	0	0	T	93091457	G	T	93091457	3	4	15	1	0	0	0	0	1	0	0	0	5302	1319	46	3	942	3	EVI5	1	93091457	Missense_Mutation	SNP	G	TCGA-OR-A5JI-01A-11D-A29I-10	91823298	93091457	156159164	2	3094										
LCE1E	353135	broad.mit.edu	37	chr1	152760102	152760102	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0294117647058824	2	1	0.606012658227848	0.881472957422325	0.46172393007836	1	1	0	tccagctgctgtggagggggCagcggccagcactctggagg	18	11	1	0	rs148574694		TCGA-OR-A5JI-01A-11D-A29I-10	TCGA-OR-A5JI-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3635255-1c8d-4532-b4ff-00d04a20ff79	6477b685-8285-40b9-ab7a-8faf6afd602e	.	LCE1E-90	NM_178353	exon2	c.C327A	p.G109G	AGGGGGCAGCGGC	.	185	4	224	1	C|1.000;A|0.000	0	0	0	0	0	A	152760102	C	A	152760102	2	1	15	1	0	0	0	0	0	0	0	1	8685	697	25	3		3	LCE1E	1	152760102	Silent	SNP	C	TCGA-OR-A5JI-01A-11D-A29I-10	59668645	152760102	96490519	3	3095										
F5	2153	bcgsc.ca	37	chr1	169510380	169510380	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0294117647058824	2	1	0.606012658227848	0.881472957422325	0.46172393007836	1	1	0	ggagaaatgggcatctgaccGagggctggggaaaggtttgt	18	5	1	2	rs9287090	byfrequency	TCGA-OR-A5JI-01A-11D-A29I-10	TCGA-OR-A5JI-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3635255-1c8d-4532-b4ff-00d04a20ff79	6477b685-8285-40b9-ab7a-8faf6afd602e	.	F5-157	NM_000130	exon13	c.C3948T	p.L1316L	CTGACCGAGGGCT	.	266	8	346	2	G|0.758;A|0.242	0	0	0	0	0	A	169510380	G	A	169510380	2	1	15	1	0	0	0	0	0	0	0	1	5361	1045	37	1		1	F5	1	169510380	Silent	SNP	G	TCGA-OR-A5JI-01A-11D-A29I-10	16750278	169510380	79740241	4	3096										
LAMC2	3918	broad.mit.edu	37	chr1	183206566	183206566	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0294117647058824	2	1	0.606012658227848	0.881472957422325	0.46172393007836	1	1	0	gcatatggatgagttcaagcGtacacagaagaatctgggaa	12	6	2	3	rs146907099	byfrequency	TCGA-OR-A5JI-01A-11D-A29I-10	TCGA-OR-A5JI-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3635255-1c8d-4532-b4ff-00d04a20ff79	6477b685-8285-40b9-ab7a-8faf6afd602e	.	LAMC2-93	NM_005562	exon18	c.G2681A	p.R894H	TCAAGCGTACACA	.	324	6	426	1	G|0.999;A|0.001	4	4	0	0	0	A	183206566	G	A	183206566	3	1	15	1	0	0	0	0	1	0	0	0	8637	1145	40	1	2751	1	LAMC2	1	183206566	Missense_Mutation	SNP	G	TCGA-OR-A5JI-01A-11D-A29I-10	13696186	183206566	66044055	5	3097										
OBSCN	84033	hgsc.bcm.edu	37	chr1	228504670	228504670	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0294117647058824	2	1	0.606012658227848	0.881472957422325	0.46172393007836	1	1	0	gcgacgccgtggcctctgcgCggctcaccgtgctgggtggg	18	14	2	0	rs11810627	byfrequency	TCGA-OR-A5JI-01A-11D-A29I-10	TCGA-OR-A5JI-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3635255-1c8d-4532-b4ff-00d04a20ff79	6477b685-8285-40b9-ab7a-8faf6afd602e	.	OBSCN-403	NM_001271223	exon62	c.C16417T	p.R5473W	TCTGCGCGGCTCA	.	5	4	1	0	C|0.643;T|0.357	0	0	0	0	0	T	228504670	C	T	228504670	3	4	15	1	0	0	0	0	1	0	0	0	10841	759	27	1	13744	1	OBSCN	1	228504670	Missense_Mutation	SNP	C	TCGA-OR-A5JI-01A-11D-A29I-10	45298104	228504670	20745951	6	3098										
TPO	7173	hgsc.bcm.edu	37	chr2	1481231	1481231	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0294117647058824	2	1	0.606012658227848	0.881472957422325	0.46172393007836	1	1	0	ggccggagacggccgcgccaGcgaggtcccctccctgacgg	16	17	0	2	rs2175977	byfrequency	TCGA-OR-A5JI-01A-11D-A29I-10	TCGA-OR-A5JI-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3635255-1c8d-4532-b4ff-00d04a20ff79	6477b685-8285-40b9-ab7a-8faf6afd602e	.	TPO-332	NM_175719	exon8	c.G1193C	p.S398T	GCGCCAGCGAGGT	.	7	7	0	0	G|0.301;C|0.699	0	0	0	0	0	C	1481231	G	C	1481231	3	2	15	1	0	0	0	0	1	0	0	0	16448	971	34	3	1219	3	TPO	2	1481231	Missense_Mutation	SNP	G	TCGA-OR-A5JI-01A-11D-A29I-10		1481231	241718142	7	3099										
SCRN3	79634	ucsc.edu	37	chr2	175292599	175292599	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0294117647058824	2	1	0.606012658227848	0.881472957422325	0.46172393007836	1	1	0	attcaaatttatcagtcaaaTttatcagtcaaagttagttc	4	6	5	0	rs74729826	byfrequency	TCGA-OR-A5JI-01A-11D-A29I-10	TCGA-OR-A5JI-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3635255-1c8d-4532-b4ff-00d04a20ff79	6477b685-8285-40b9-ab7a-8faf6afd602e	.	SCRN3-91	NM_024583	exon8	c.T1251G	p.N417K	GTCAAATTTATCA	.	145	24	187	0	T|0.842;G|0.157	2	2	0	0	0	G	175292599	T	G	175292599	3	3	15	1	0	0	0	0	1	0	0	0	13975	1490	52	5	1277	5	SCRN3	2	175292599	Missense_Mutation	SNP	T	TCGA-OR-A5JI-01A-11D-A29I-10	173811368	175292599	67906774	8	3100										
SNED1	25992	hgsc.bcm.edu	37	chr2	242011084	242011084	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0294117647058824	2	1	0.606012658227848	0.881472957422325	0.46172393007836	1	1	0	cccggcgcgcctgccggagcTgcgcctgctcaatgaccaca	12	18	1	1	rs17440466	byfrequency	TCGA-OR-A5JI-01A-11D-A29I-10	TCGA-OR-A5JI-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3635255-1c8d-4532-b4ff-00d04a20ff79	6477b685-8285-40b9-ab7a-8faf6afd602e	.	SNED1-72	NM_001080437	exon25	c.T3683C	p.L1228P	CGGAGCTGCGCCT	.	20	7	2	0	T|0.877;C|0.123	12	10	2	0	0	C	242011084	T	C	242011084	3	2	15	1	0	0	0	0	1	0	0	0	14880	1580	55	4	3781	4	SNED1	2	242011084	Missense_Mutation	SNP	T	TCGA-OR-A5JI-01A-11D-A29I-10	66718485	242011084	1188289	9	3101										
LRIG1	26018	hgsc.bcm.edu	37	chr3	66550756	66550756	+	Missense_Mutation	SNP	G	G	C													0.0294117647058824	2	1	0.606012658227848	0.881472957422325	0.46172393007836	1	1	0	ggtcaccggctccagccgaaGcaaaagcagccagagaagga					rs1403625		TCGA-OR-A5JI-01A-11D-A29I-10	TCGA-OR-A5JI-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3635255-1c8d-4532-b4ff-00d04a20ff79	6477b685-8285-40b9-ab7a-8faf6afd602e	.	LRIG1-230	NM_015541	exon1	c.C76G	p.L26V	GCCGAAGCAAAAG	.	5	5	0	0	G|0.237;C|0.763	0	0	0	0	0	C	66550756	G	C	66550756	3	2	15	1	0	0	0	0	1	0	0	0	8971	971	34	3	3281	3	LRIG1	3	66550756	Missense_Mutation	SNP	G	TCGA-OR-A5JI-01A-11D-A29I-10		66550756	131471674	10	3102	26	2								
LRIG1	26018	hgsc.bcm.edu	37	chr3	66550762	66550762	+	Missense_Mutation	SNP	G	G	C													0.0294117647058824	2	1	0.606012658227848	0.881472957422325	0.46172393007836	1	1	0	cggctccagccgaagcaaaaGcagccagagaaggagaaggc					rs1403626	byfrequency	TCGA-OR-A5JI-01A-11D-A29I-10	TCGA-OR-A5JI-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3635255-1c8d-4532-b4ff-00d04a20ff79	6477b685-8285-40b9-ab7a-8faf6afd602e	.	LRIG1-230	NM_015541	exon1	c.C70G	p.L24V	GCAAAAGCAGCCA	.	5	5	0	0	G|0.252;C|0.748	0	0	0	0	0	C	66550762	G	C	66550762	3	2	15	1	0	0	0	0	1	0	0	0	8971	971	34	3	3287	3	LRIG1	3	66550762	Missense_Mutation	SNP	G	TCGA-OR-A5JI-01A-11D-A29I-10	6	66550762	131471668	11	3103	26	2								
OR5H6	79295	broad.mit.edu	37	chr3	97983207	97983207	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0294117647058824	2	1	0.606012658227848	0.881472957422325	0.46172393007836	1	1	0	aaaatgcaacattgctgacaGagtttgttctcacaggattt	8	7	1	2	rs137937308	byfrequency	TCGA-OR-A5JI-01A-11D-A29I-10	TCGA-OR-A5JI-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3635255-1c8d-4532-b4ff-00d04a20ff79	6477b685-8285-40b9-ab7a-8faf6afd602e	.	OR5H6-137	NM_001005479	exon1	c.G79C	p.E27Q	CTGACAGAGTTTG	.	165	3	150	0	G|0.997;C|0.003	0	0	0	0	0	C	97983207	G	C	97983207	3	2	15	1	0	0	0	0	1	0	0	0	11192	943	33	3	81	3	OR5H6	3	97983207	Missense_Mutation	SNP	G	TCGA-OR-A5JI-01A-11D-A29I-10	31432445	97983207	100039223	12	3104										
LRRC58	116064	hgsc.bcm.edu	37	chr3	120068022	120068022	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0294117647058824	2	1	0.606012658227848	0.881472957422325	0.46172393007836	1	1	0	gactccagcgtctcggtggaCacgctgaggcgggaccagtt	15	12	1	1	rs6770482		TCGA-OR-A5JI-01A-11D-A29I-10	TCGA-OR-A5JI-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3635255-1c8d-4532-b4ff-00d04a20ff79	6477b685-8285-40b9-ab7a-8faf6afd602e	.	.	NM_001099678	exon1	c.G69C	p.V23V	GGTGGACACGCTG	.	5	5	0	0	C|0.826;G|0.174	0	0	0	0	0	G	120068022	C	G	120068022	2	3	15	1	0	0	0	0	0	0	0	1	9041	465	17	3		3	LRRC58	3	120068022	Silent	SNP	C	TCGA-OR-A5JI-01A-11D-A29I-10	22084815	120068022	77954408	13	3105										
TNIP2	79155	hgsc.bcm.edu	37	chr4	2757800	2757800	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0294117647058824	2	1	0.606012658227848	0.881472957422325	0.46172393007836	1	1	0	tcgcagctgctcccggaagcGcgcaacctgctccagcagcg	12	17	0	0	rs74548850	byfrequency	TCGA-OR-A5JI-01A-11D-A29I-10	TCGA-OR-A5JI-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3635255-1c8d-4532-b4ff-00d04a20ff79	6477b685-8285-40b9-ab7a-8faf6afd602e	.	TNIP2-90	NM_024309	exon1	c.C217G	p.R73G	GGAAGCGCGCAAC	.	17	9	0	0	G|0.957;C|0.043	0	0	0	0	0	C	2757800	G	C	2757800	3	2	15	1	0	0	0	0	1	0	0	0	16352	1087	38	2	1096	2	TNIP2	4	2757800	Missense_Mutation	SNP	G	TCGA-OR-A5JI-01A-11D-A29I-10		2757800	188396476	14	3106										
DOK7	285489	hgsc.bcm.edu	37	chr4	3495095	3495095	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0294117647058824	2	1	0.606012658227848	0.881472957422325	0.46172393007836	1	1	0	ggtgatggaggccccccaggGcagcgaggccacactgcctg	16	14	0	1	rs9684786	byfrequency	TCGA-OR-A5JI-01A-11D-A29I-10	TCGA-OR-A5JI-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3635255-1c8d-4532-b4ff-00d04a20ff79	6477b685-8285-40b9-ab7a-8faf6afd602e	.	DOK7-91	NM_173660	exon7	c.G1382A	p.G461D	CCCAGGGCAGCGA	.	14	11	0	0	G|0.834;A|0.166	0	0	0	0	0	A	3495095	G	A	3495095	3	1	15	1	0	0	0	0	1	0	0	0	4713	1203	42	3	1408	3	DOK7	4	3495095	Missense_Mutation	SNP	G	TCGA-OR-A5JI-01A-11D-A29I-10	737295	3495095	187659181	15	3107										
WDR1	9948	broad.mit.edu	37	chr4	10084680	10084680	+	Frame_Shift_Del	DEL	C	C	-													0.0294117647058824	2	1	0.606012658227848	0.881472957422325	0.46172393007836	1	1	0	catgaggctggtgtaccgcaCggtgtcgtccatgctgcagc					novel		TCGA-OR-A5JI-01A-11D-A29I-10	TCGA-OR-A5JI-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3635255-1c8d-4532-b4ff-00d04a20ff79	6477b685-8285-40b9-ab7a-8faf6afd602e	.	WDR1-48	NM_017491	exon10	c.1162delG	p.V388fs	ACCGCACGGTGTC	.	285	7	184	0	.	0	0	0	0	0	-	10084680	C	-	10084680	7	5	15	1	0	1	0	1	0	0	0	0	17310	536	19	0	682	0	WDR1	4	10084680	Frame_Shift_Del	DEL	C	TCGA-OR-A5JI-01A-11D-A29I-10	6589585	10084680	181069596	16	3108										
BEND4	389206	broad.mit.edu;bcgsc.ca	37	chr4	42145732	42145732	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0294117647058824	2	1	0.606012658227848	0.881472957422325	0.46172393007836	1	1	0	gaaagcttcccgagagcaggTaattttgtagagagtcagtg	13	6	1	2	novel		TCGA-OR-A5JI-01A-11D-A29I-10	TCGA-OR-A5JI-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3635255-1c8d-4532-b4ff-00d04a20ff79	6477b685-8285-40b9-ab7a-8faf6afd602e	.	BEND4-90	NM_001159547	exon3	c.A767T	p.Y256F	AGCAGGTAATTTT	.	149	6	129	1	.	0	0	0	0	0	A	42145732	T	A	42145732	3	1	15	1	0	0	0	0	1	0	0	0	1401	1638	57	5	853	5	BEND4	4	42145732	Missense_Mutation	SNP	T	TCGA-OR-A5JI-01A-11D-A29I-10	32061052	42145732	149008544	17	3109										
DSPP	1834	bcgsc.ca	37	chr4	88537126	88537126	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0294117647058824	2	1	0.606012658227848	0.881472957422325	0.46172393007836	1	1	0	gatagcagcgacagcagcgaCagcagcgatagcagtgacag	14	10	0	1	novel		TCGA-OR-A5JI-01A-11D-A29I-10	TCGA-OR-A5JI-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3635255-1c8d-4532-b4ff-00d04a20ff79	6477b685-8285-40b9-ab7a-8faf6afd602e	.	DSPP-90	NM_014208	exon5	c.C3312T	p.D1104D	CAGCGACAGCAGC	.	498	63	252	6	.	0	0	0	0	0	T	88537126	C	T	88537126	2	4	15	1	0	0	0	0	0	0	0	1	4793	477	17	3		3	DSPP	4	88537126	Silent	SNP	C	TCGA-OR-A5JI-01A-11D-A29I-10	46391394	88537126	102617150	18	3110										
PKD2	5311	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	88996821	88996821	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0294117647058824	2	1	0.606012658227848	0.881472957422325	0.46172393007836	1	1	0	catggaaggtgcaggtggaaAtgggagttctaatgtccacg	15	6	1	0	novel		TCGA-OR-A5JI-01A-11D-A29I-10	TCGA-OR-A5JI-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3635255-1c8d-4532-b4ff-00d04a20ff79	6477b685-8285-40b9-ab7a-8faf6afd602e	.	PKD2-91	NM_000297	exon15	c.A2882G	p.N961S	GTGGAAATGGGAG	.	137	31	83	0	.	5	4	1	0	0	G	88996821	A	G	88996821	3	3	15	1	0	0	0	0	1	0	0	0	11995	101	4	4	2940	4	PKD2	4	88996821	Missense_Mutation	SNP	A	TCGA-OR-A5JI-01A-11D-A29I-10	459695	88996821	102157455	19	3111										
ZNF131	7690	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	43161449	43161449	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0294117647058824	2	1	0.606012658227848	0.881472957422325	0.46172393007836	1	1	0	ttcaaatgttatcactgagtCattgccatctgcagaatcag	7	9	5	2	novel		TCGA-OR-A5JI-01A-11D-A29I-10	TCGA-OR-A5JI-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3635255-1c8d-4532-b4ff-00d04a20ff79	6477b685-8285-40b9-ab7a-8faf6afd602e	.	ZNF131-90	NM_003432	exon5	c.C470T	p.S157L	CTGAGTCATTGCC	.	228	51	160	0	.	2	2	0	0	0	T	43161449	C	T	43161449	3	4	15	1	0	0	0	0	1	0	0	0	17758	838	29	3	484	3	ZNF131	5	43161449	Missense_Mutation	SNP	C	TCGA-OR-A5JI-01A-11D-A29I-10		43161449	137753811	20	3112										
PCDHB13	56123	hgsc.bcm.edu	37	chr5	140595625	140595625	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0294117647058824	2	1	0.606012658227848	0.881472957422325	0.46172393007836	1	1	0	agcacaggctggtggtgctgGtcaaggacaatggcgagcct	16	9	1	0	rs76927815		TCGA-OR-A5JI-01A-11D-A29I-10	TCGA-OR-A5JI-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3635255-1c8d-4532-b4ff-00d04a20ff79	6477b685-8285-40b9-ab7a-8faf6afd602e	.	PCDHB13-93	NM_018933	exon1	c.G1930A	p.V644I	GTGCTGGTCAAGG	.	57	25	5	0	G|0.500;A|0.500	134	131	3	0	0	A	140595625	G	A	140595625	3	1	15	1	0	0	0	0	1	0	0	0	11567	1261	44	3	1932	3	PCDHB13	5	140595625	Missense_Mutation	SNP	G	TCGA-OR-A5JI-01A-11D-A29I-10	97434176	140595625	40319635	21	3113										
ARL10	285598	hgsc.bcm.edu	37	chr5	175792605	175792605	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0294117647058824	2	1	0.606012658227848	0.881472957422325	0.46172393007836	1	1	0	ggccccttggtgctggcgctGggcggcgccgcggcggtgct	20	14	0	0	rs2303667		TCGA-OR-A5JI-01A-11D-A29I-10	TCGA-OR-A5JI-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3635255-1c8d-4532-b4ff-00d04a20ff79	6477b685-8285-40b9-ab7a-8faf6afd602e	.	ARL10-91	NM_173664	exon1	c.G39C	p.L13L	GGCGCTGGGCGGC	.	8	8	0	0	G|0.585;C|0.415	0	0	0	0	0	C	175792605	G	C	175792605	2	2	15	1	0	0	0	0	0	0	0	1	926	1335	47	3		3	ARL10	5	175792605	Silent	SNP	G	TCGA-OR-A5JI-01A-11D-A29I-10	35196980	175792605	5122655	22	3114										
KCNK17	89822	hgsc.bcm.edu	37	chr6	39282036	39282036	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0294117647058824	2	1	0.606012658227848	0.881472957422325	0.46172393007836	1	1	0	gagcagcaggagcacggtgcTgggcaccgcgcagccccgga	17	14	0	0	rs10947804	byfrequency	TCGA-OR-A5JI-01A-11D-A29I-10	TCGA-OR-A5JI-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3635255-1c8d-4532-b4ff-00d04a20ff79	6477b685-8285-40b9-ab7a-8faf6afd602e	.	KCNK17-227	NM_001135111	exon1	c.A61G	p.S21G	CGGTGCTGGGCAC	.	10	7	1	0	T|0.441;C|0.559	1	1	0	0	0	C	39282036	T	C	39282036	3	2	15	1	0	0	0	0	1	0	0	0	8085	1580	55	4	1089	4	KCNK17	6	39282036	Missense_Mutation	SNP	T	TCGA-OR-A5JI-01A-11D-A29I-10		39282036	131833031	23	3115										
PEX6	5190	hgsc.bcm.edu	37	chr6	42946490	42946490	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0294117647058824	2	1	0.606012658227848	0.881472957422325	0.46172393007836	1	1	0	tccagcacccgcggtccgggCactgggagggtctctccgcg	15	16	1	0	rs9462858	byfrequency	TCGA-OR-A5JI-01A-11D-A29I-10	TCGA-OR-A5JI-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3635255-1c8d-4532-b4ff-00d04a20ff79	6477b685-8285-40b9-ab7a-8faf6afd602e	.	PEX6-91	NM_000287	exon1	c.G399T	p.V133V	TCCGGGCACTGGG	.	6	6	1	0	C|0.673;A|0.327	0	0	0	0	0	A	42946490	C	A	42946490	2	1	15	1	0	0	0	0	0	0	0	1	11779	697	25	3		3	PEX6	6	42946490	Silent	SNP	C	TCGA-OR-A5JI-01A-11D-A29I-10	3664454	42946490	128168577	24	3116										
GARS	2617	hgsc.bcm.edu	37	chr7	30634661	30634661	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0294117647058824	2	1	0.606012658227848	0.881472957422325	0.46172393007836	1	1	0	ccctcagcgcggcctcctgcCccccgatctccttgcccgcc	8	24	2	0	rs1049402	byfrequency	TCGA-OR-A5JI-01A-11D-A29I-10	TCGA-OR-A5JI-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3635255-1c8d-4532-b4ff-00d04a20ff79	6477b685-8285-40b9-ab7a-8faf6afd602e	.	GARS-91	NM_002047	exon1	c.C124G	p.P42A	TCCTGCCCCCCGA	.	6	5	1	0	C|0.329;G|0.671	3	2	1	0	0	G	30634661	C	G	30634661	3	3	15	1	0	0	0	0	1	0	0	0	6262	623	22	3	126	3	GARS	7	30634661	Missense_Mutation	SNP	C	TCGA-OR-A5JI-01A-11D-A29I-10		30634661	128504002	25	3117										
CLDN23	137075	hgsc.bcm.edu	37	chr8	8560536	8560536	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0294117647058824	2	1	0.606012658227848	0.881472957422325	0.46172393007836	1	1	0	gcagcgtcagcaccatccaaGtggagtggcccgagcccgac	13	15	1	0	rs12548737	byfrequency	TCGA-OR-A5JI-01A-11D-A29I-10	TCGA-OR-A5JI-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3635255-1c8d-4532-b4ff-00d04a20ff79	6477b685-8285-40b9-ab7a-8faf6afd602e	.	.	NM_194284	exon1	c.G628A	p.V210M	ATCCAAGTGGAGT	.	8	8	1	0	G|0.907;A|0.093	3	0	3	0	0	A	8560536	G	A	8560536	3	1	15	1	0	0	0	0	1	0	0	0	3490	1029	36	3	630	3	CLDN23	8	8560536	Missense_Mutation	SNP	G	TCGA-OR-A5JI-01A-11D-A29I-10		8560536	137803486	26	3118										
PLEC	5339	hgsc.bcm.edu	37	chr8	144998190	144998190	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0294117647058824	2	1	0.606012658227848	0.881472957422325	0.46172393007836	1	1	0	gccagctgccgctgcctcgcAgcctccagctcggcctgctc	11	20	0	0	rs2857829	byfrequency	TCGA-OR-A5JI-01A-11D-A29I-10	TCGA-OR-A5JI-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3635255-1c8d-4532-b4ff-00d04a20ff79	6477b685-8285-40b9-ab7a-8faf6afd602e	.	PLEC-141	NM_201380	exon31	c.T6318C	p.A2106A	CCTCGCAGCCTCC	.	7	6	0	0	A|0.738;G|0.262	5	1	4	0	0	G	144998190	A	G	144998190	2	3	15	1	0	0	0	0	0	0	0	1	12081	175	7	4		4	PLEC	8	144998190	Silent	SNP	A	TCGA-OR-A5JI-01A-11D-A29I-10	136437654	144998190	1365832	27	3119										
SHARPIN	81858	hgsc.bcm.edu	37	chr8	145158503	145158503	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0294117647058824	2	1	0.606012658227848	0.881472957422325	0.46172393007836	1	1	0	cagccggaagcgcccaggccGctcagggtccgcgctcagct	14	17	2	0	rs11136254		TCGA-OR-A5JI-01A-11D-A29I-10	TCGA-OR-A5JI-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3635255-1c8d-4532-b4ff-00d04a20ff79	6477b685-8285-40b9-ab7a-8faf6afd602e	.	SHARPIN-523	NM_030974	exon1	c.C154A	p.R52R	CAGGCCGCTCAGG	.	4	4	0	0	G|0.108;T|0.892	10	0	10	0	0	T	145158503	G	T	145158503	2	4	15	1	0	0	0	0	0	0	0	1	14302	1086	38	2		2	SHARPIN	8	145158503	Silent	SNP	G	TCGA-OR-A5JI-01A-11D-A29I-10	160313	145158503	1205519	28	3120										
PTPRD	5789	broad.mit.edu	37	chr9	8485823	8485823	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0294117647058824	2	1	0.606012658227848	0.881472957422325	0.46172393007836	1	1	0	tatggcccgggccctttgctCgtatgagcacgtacttttac	10	12	0	1	novel		TCGA-OR-A5JI-01A-11D-A29I-10	TCGA-OR-A5JI-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3635255-1c8d-4532-b4ff-00d04a20ff79	6477b685-8285-40b9-ab7a-8faf6afd602e	.	PTPRD-912	NM_002839	exon28	c.G2994A	p.T998T	TTTGCTCGTATGA	.	155	6	145	1	.	0	0	0	0	0	T	8485823	C	T	8485823	2	4	15	1	0	0	0	0	0	0	0	1	12834	871	31	1		1	PTPRD	9	8485823	Silent	SNP	C	TCGA-OR-A5JI-01A-11D-A29I-10		8485823	132727608	29	3121										
CRB2	286204	hgsc.bcm.edu	37	chr9	126135831	126135831	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0294117647058824	2	1	0.606012658227848	0.881472957422325	0.46172393007836	1	1	0	gctgtgcgcatcctgctggcTgagaacttcaccggctgctt	12	13	1	1	rs7848449	byfrequency	TCGA-OR-A5JI-01A-11D-A29I-10	TCGA-OR-A5JI-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3635255-1c8d-4532-b4ff-00d04a20ff79	6477b685-8285-40b9-ab7a-8faf6afd602e	.	CRB2-91	NM_173689	exon10	c.T3021C	p.A1007A	GCTGGCTGAGAAC	.	14	5	0	0	T|0.886;C|0.114	0	0	0	0	0	C	126135831	T	C	126135831	2	2	15	1	0	0	0	0	0	0	0	1	3855	1567	55	4		4	CRB2	9	126135831	Silent	SNP	T	TCGA-OR-A5JI-01A-11D-A29I-10	117650008	126135831	15077600	30	3122										
PPP6C	5537	broad.mit.edu	37	chr9	127951863	127951863	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0294117647058824	2	1	0.606012658227848	0.881472957422325	0.46172393007836	1	1	0	ggcgggggtcctggagaaagGaagggccggccggcgggcgc	23	10	0	1	rs466994	byfrequency	TCGA-OR-A5JI-01A-11D-A29I-10	TCGA-OR-A5JI-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3635255-1c8d-4532-b4ff-00d04a20ff79	6477b685-8285-40b9-ab7a-8faf6afd602e	.	PPP6C-227	NM_001123355	exon1	c.C135T	p.F45F	AGAAAGGAAGGGC	.	35	3	22	0	G|0.563;A|0.437	0	0	0	0	0	A	127951863	G	A	127951863	2	1	15	1	0	0	0	0	0	0	0	1	12439	1165	41	3		3	PPP6C	9	127951863	Silent	SNP	G	TCGA-OR-A5JI-01A-11D-A29I-10	1816032	127951863	13261568	31	3123										
OPTN	10133	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	13152419	13152419	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0294117647058824	2	1	0.606012658227848	0.881472957422325	0.46172393007836	1	1	0	atggccttgagtcatgagaaTgagaaattgaaggaagagct	13	4	1	5	novel		TCGA-OR-A5JI-01A-11D-A29I-10	TCGA-OR-A5JI-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3635255-1c8d-4532-b4ff-00d04a20ff79	6477b685-8285-40b9-ab7a-8faf6afd602e	.	OPTN-70	NM_001008212	exon4	c.T312A	p.N104K	TGAGAATGAGAAA	.	256	25	287	0	.	26	24	2	0	0	A	13152419	T	A	13152419	3	1	15	1	0	0	0	0	1	0	0	0	10918	1461	51	5	318	5	OPTN	10	13152419	Missense_Mutation	SNP	T	TCGA-OR-A5JI-01A-11D-A29I-10		13152419	122382328	32	3124										
FAM171A1	221061	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	15256461	15256461	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0294117647058824	2	1	0.606012658227848	0.881472957422325	0.46172393007836	1	1	0	gtggctggtgacggacagcgGgccagggaattctgacgctc	17	10	1	2	novel		TCGA-OR-A5JI-01A-11D-A29I-10	TCGA-OR-A5JI-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3635255-1c8d-4532-b4ff-00d04a20ff79	6477b685-8285-40b9-ab7a-8faf6afd602e	.	FAM171A1-138	NM_001010924	exon8	c.C1126G	p.P376A	ACAGCGGGCCAGG	.	87	12	70	0	.	1	0	1	0	0	C	15256461	G	C	15256461	3	2	15	1	0	0	0	0	1	0	0	0	5506	1232	43	3	1550	3	FAM171A1	10	15256461	Missense_Mutation	SNP	G	TCGA-OR-A5JI-01A-11D-A29I-10	2104042	15256461	120278286	33	3125										
KNDC1	85442	hgsc.bcm.edu	37	chr10	135012429	135012430	+	Missense_Mutation	DNP	TT	TT	AC													0.0294117647058824	2	1	0.606012658227848	0.881472957422325	0.46172393007836	1	1	0	tgagccgatcccacctggagTtgcttccgggggcctcaggc					novel		TCGA-OR-A5JI-01A-11D-A29I-10	TCGA-OR-A5JI-10A-01D-A29L-10	TT	TT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3635255-1c8d-4532-b4ff-00d04a20ff79	6477b685-8285-40b9-ab7a-8faf6afd602e	.	KNDC1-229	NM_152643	exon14	c.T2418C	p.V806D	TGGAGTTGCTTCC	.	4	0	0	0	T|0.470;C|0.530	0	0	0	0	0	AC	135012430	TT	AC	135012429	3	1	15	1	0	0	0	0	1	0	0	0	8447	1725	60	5	2471	5	KNDC1	10	135012429	Missense_Mutation	DNP	TT	TCGA-OR-A5JI-01A-11D-A29I-10	119755968	135012429	522318	34	3126										
MUC2	4583	bcgsc.ca	37	chr11	1092947	1092947	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0294117647058824	2	1	0.606012658227848	0.881472957422325	0.46172393007836	1	1	0	atcgacacccatcaccaccaCcactacggtgaccccaaccc	4	21	1	1	novel		TCGA-OR-A5JI-01A-11D-A29I-10	TCGA-OR-A5JI-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3635255-1c8d-4532-b4ff-00d04a20ff79	6477b685-8285-40b9-ab7a-8faf6afd602e	.	MUC2-90	NM_002457	exon30	c.C4766A	p.T1589N	CCACCACCACTAC	.	187	10	209	4	.	0	0	0	0	0	A	1092947	C	A	1092947	3	1	15	1	0	0	0	0	1	0	0	0	10003	507	18	3	4884	3	MUC2	11	1092947	Missense_Mutation	SNP	C	TCGA-OR-A5JI-01A-11D-A29I-10		1092947	133913569	35	3127										
MUC2	4583	bcgsc.ca	37	chr11	1093004	1093004	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0294117647058824	2	1	0.606012658227848	0.881472957422325	0.46172393007836	1	1	0	acagaccccaaccacgacacCcatcaccaccaccactacgg	4	21	1	1	novel		TCGA-OR-A5JI-01A-11D-A29I-10	TCGA-OR-A5JI-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3635255-1c8d-4532-b4ff-00d04a20ff79	6477b685-8285-40b9-ab7a-8faf6afd602e	.	MUC2-90	NM_002457	exon30	c.C4823A	p.P1608H	CGACACCCATCAC	.	148	6	154	0	.	0	0	0	0	0	A	1093004	C	A	1093004	3	1	15	1	0	0	0	0	1	0	0	0	10003	623	22	3	4941	3	MUC2	11	1093004	Missense_Mutation	SNP	C	TCGA-OR-A5JI-01A-11D-A29I-10	57	1093004	133913512	36	3128										
MUC15	143662	bcgsc.ca	37	chr11	26587133	26587133	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0294117647058824	2	1	0.606012658227848	0.881472957422325	0.46172393007836	1	1	0	cccaaagaatgctctgctgaTgagttactggagaaatctgt	10	8	2	4	rs293980	byfrequency	TCGA-OR-A5JI-01A-11D-A29I-10	TCGA-OR-A5JI-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3635255-1c8d-4532-b4ff-00d04a20ff79	6477b685-8285-40b9-ab7a-8faf6afd602e	.	MUC15-92	NM_001135092	exon3	c.A354G	p.S118S	TGCTGATGAGTTA	.	253	9	277	1	T|0.311;C|0.689	0	0	0	0	0	C	26587133	T	C	26587133	2	2	15	1	0	0	0	0	0	0	0	1	10000	1451	51	4		4	MUC15	11	26587133	Silent	SNP	T	TCGA-OR-A5JI-01A-11D-A29I-10	25494129	26587133	108419383	37	3129										
GAL3ST3	89792	hgsc.bcm.edu	37	chr11	65810209	65810209	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0294117647058824	2	1	0.606012658227848	0.881472957422325	0.46172393007836	1	1	0	accttgcggctgggctgccaCggctgcagctgcttggtgcg	16	13	0	0	rs61895584	byfrequency	TCGA-OR-A5JI-01A-11D-A29I-10	TCGA-OR-A5JI-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3635255-1c8d-4532-b4ff-00d04a20ff79	6477b685-8285-40b9-ab7a-8faf6afd602e	.	GAL3ST3-91	NM_033036	exon3	c.G1065A	p.P355P	CTGCCACGGCTGC	.	4	4	0	0	C|0.233;T|0.767	0	0	0	0	0	T	65810209	C	T	65810209	2	4	15	1	0	0	0	0	0	0	0	1	6219	523	19	1		1	GAL3ST3	11	65810209	Silent	SNP	C	TCGA-OR-A5JI-01A-11D-A29I-10	39223076	65810209	69196307	38	3130										
MAP6	4135	bcgsc.ca	37	chr11	75298797	75298797	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0294117647058824	2	1	0.606012658227848	0.881472957422325	0.46172393007836	1	1	0	gctgagaccatgggaccttcAtccttgacaggtgctgggac	13	11	1	2	rs1231128	byfrequency	TCGA-OR-A5JI-01A-11D-A29I-10	TCGA-OR-A5JI-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3635255-1c8d-4532-b4ff-00d04a20ff79	6477b685-8285-40b9-ab7a-8faf6afd602e	.	MAP6-226	NM_033063	exon4	c.T1749C	p.D583D	ACCTTCATCCTTG	.	261	8	336	3	A|0.685;G|0.315	25	25	0	0	0	G	75298797	A	G	75298797	2	3	15	1	0	0	0	0	0	0	0	1	9292	214	8	4		4	MAP6	11	75298797	Silent	SNP	A	TCGA-OR-A5JI-01A-11D-A29I-10	9488588	75298797	59707719	39	3131										
EXPH5	23086	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr11	108382838	108382838	+	Frame_Shift_Del	DEL	G	G	-													0.0294117647058824	2	1	0.606012658227848	0.881472957422325	0.46172393007836	1	1	0	cttccttctcttccagttgaGgcatgtggctcccctgaggg					novel		TCGA-OR-A5JI-01A-11D-A29I-10	TCGA-OR-A5JI-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3635255-1c8d-4532-b4ff-00d04a20ff79	6477b685-8285-40b9-ab7a-8faf6afd602e	.	EXPH5-95	NM_015065	exon6	c.3396delC	p.A1132fs	AGTTGAGGCATGT	.	75	22	98	0	.	0	0	0	0	0	-	108382838	G	-	108382838	7	5	15	1	0	1	0	1	0	0	0	0	5335	987	35	0	2577	0	EXPH5	11	108382838	Frame_Shift_Del	DEL	G	TCGA-OR-A5JI-01A-11D-A29I-10	33084041	108382838	26623678	40	3132										
RIMBP2	23504	hgsc.bcm.edu	37	chr12	130921471	130921471	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0294117647058824	2	1	0.606012658227848	0.881472957422325	0.46172393007836	1	1	0	accggggtgccctgtggctgTggcaggatgcggctgggtga	20	9	0	1	rs2292663	byfrequency	TCGA-OR-A5JI-01A-11D-A29I-10	TCGA-OR-A5JI-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3635255-1c8d-4532-b4ff-00d04a20ff79	6477b685-8285-40b9-ab7a-8faf6afd602e	.	RIMBP2-142	NM_015347	exon10	c.A1971G	p.P657P	TGGCTGTGGCAGG	.	29	5	2	0	T|0.868;C|0.132	1	1	0	0	0	C	130921471	T	C	130921471	2	2	15	1	0	0	0	0	0	0	0	1	13398	1683	59	4		4	RIMBP2	12	130921471	Silent	SNP	T	TCGA-OR-A5JI-01A-11D-A29I-10		130921471	2930424	41	3133										
MYCBP2	23077	ucsc.edu;bcgsc.ca	37	chr13	77837809	77837809	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0294117647058824	2	1	0.606012658227848	0.881472957422325	0.46172393007836	1	1	0	taatatgcaagtccttttccAgatcgaatagtgagatacca	7	8	0	2	novel		TCGA-OR-A5JI-01A-11D-A29I-10	TCGA-OR-A5JI-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3635255-1c8d-4532-b4ff-00d04a20ff79	6477b685-8285-40b9-ab7a-8faf6afd602e	.	MYCBP2-236	NM_015057	exon10	c.T1547C	p.L516P	TTTTCCAGATCGA	.	32	4	36	0	.	0	0	0	0	0	G	77837809	A	G	77837809	3	3	15	1	0	0	0	0	1	0	0	0	10046	188	7	4	12785	4	MYCBP2	13	77837809	Missense_Mutation	SNP	A	TCGA-OR-A5JI-01A-11D-A29I-10		77837809	37332069	42	3134										
ITGBL1	9358	bcgsc.ca	37	chr13	102227872	102227872	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0294117647058824	2	1	0.606012658227848	0.881472957422325	0.46172393007836	1	1	0	gacgatagagaatgcatagaCgatgaaacagaagaaatatg	11	4	0	5	rs3916912	byfrequency	TCGA-OR-A5JI-01A-11D-A29I-10	TCGA-OR-A5JI-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3635255-1c8d-4532-b4ff-00d04a20ff79	6477b685-8285-40b9-ab7a-8faf6afd602e	.	ITGBL1-92	NM_004791	exon4	c.C561T	p.D187D	CATAGACGATGAA	.	108	5	215	0	C|0.831;T|0.169	1	1	0	0	0	T	102227872	C	T	102227872	2	4	15	1	0	0	0	0	0	0	0	1	7923	535	19	1		1	ITGBL1	13	102227872	Silent	SNP	C	TCGA-OR-A5JI-01A-11D-A29I-10	24390063	102227872	12942006	43	3135										
LACTB	114294	hgsc.bcm.edu	37	chr15	63414083	63414083	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0294117647058824	2	1	0.606012658227848	0.881472957422325	0.46172393007836	1	1	0	gagacgccatgtaccggctcAtgtcagcagtgactgcccgg	13	13	2	2	rs34317102	byfrequency	TCGA-OR-A5JI-01A-11D-A29I-10	TCGA-OR-A5JI-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3635255-1c8d-4532-b4ff-00d04a20ff79	6477b685-8285-40b9-ab7a-8faf6afd602e	.	LACTB-90	NM_171846	exon1	c.A13C	p.M5L	CGGCTCATGTCAG	.	8	8	0	0	A|0.226;C|0.774	0	0	0	0	0	C	63414083	A	C	63414083	3	2	15	1	0	0	0	0	1	0	0	0	8619	217	8	5	15	5	LACTB	15	63414083	Missense_Mutation	SNP	A	TCGA-OR-A5JI-01A-11D-A29I-10		63414083	39117309	44	3136										
AKAP13	11214	broad.mit.edu	37	chr15	86124623	86124623	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0294117647058824	2	1	0.606012658227848	0.881472957422325	0.46172393007836	1	1	0	gagcccagaagagagaatatAtcacacaacacccaagacat	7	11	1	4	novel		TCGA-OR-A5JI-01A-11D-A29I-10	TCGA-OR-A5JI-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3635255-1c8d-4532-b4ff-00d04a20ff79	6477b685-8285-40b9-ab7a-8faf6afd602e	.	AKAP13-258	NM_007200	exon7	c.A3324C	p.I1108I	GAATATATCACAC	.	174	5	193	0	.	0	0	0	0	0	C	86124623	A	C	86124623	2	2	15	1	0	0	0	0	0	0	0	1	449	439	16	5		5	AKAP13	15	86124623	Silent	SNP	A	TCGA-OR-A5JI-01A-11D-A29I-10	22710540	86124623	16406769	45	3137										
CRTC3	64784	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	91150615	91150615	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0294117647058824	2	1	0.606012658227848	0.881472957422325	0.46172393007836	1	1	0	tcctcccctccttaggaccaAttctgattctgctcttcaca	4	16	4	1	novel		TCGA-OR-A5JI-01A-11D-A29I-10	TCGA-OR-A5JI-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3635255-1c8d-4532-b4ff-00d04a20ff79	6477b685-8285-40b9-ab7a-8faf6afd602e	.	CRTC3-393	NM_022769	exon6	c.A482G	p.N161S	GGACCAATTCTGA	.	55	10	56	0	.	0	0	0	0	0	G	91150615	A	G	91150615	3	3	15	1	0	0	0	0	1	0	0	0	3907	101	4	4	504	4	CRTC3	15	91150615	Missense_Mutation	SNP	A	TCGA-OR-A5JI-01A-11D-A29I-10	5025992	91150615	11380777	46	3138										
SEZ6L2	26470	hgsc.bcm.edu	37	chr16	29908433	29908433	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0294117647058824	2	1	0.606012658227848	0.881472957422325	0.46172393007836	1	1	0	gggtggctagcgtggggtccCgatcagatcctgggacagtg	18	9	1	1	rs11649499	byfrequency	TCGA-OR-A5JI-01A-11D-A29I-10	TCGA-OR-A5JI-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3635255-1c8d-4532-b4ff-00d04a20ff79	6477b685-8285-40b9-ab7a-8faf6afd602e	.	SEZ6L2-92	NM_001243332	exon3	c.G221C	p.R74P	GGGTCCCGATCAG	.	5	5	0	0	C|0.218;G|0.782	0	0	0	0	0	G	29908433	C	G	29908433	3	3	15	1	0	0	0	0	1	0	0	0	14179	652	23	2	2614	2	SEZ6L2	16	29908433	Missense_Mutation	SNP	C	TCGA-OR-A5JI-01A-11D-A29I-10		29908433	60446320	47	3139										
CCDC102A	92922	hgsc.bcm.edu	37	chr16	57562804	57562804	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0294117647058824	2	1	0.606012658227848	0.881472957422325	0.46172393007836	1	1	0	ggcagtgcagtccgaccaccGgcgcatggtcttctccatct	11	15	3	0	rs12935069		TCGA-OR-A5JI-01A-11D-A29I-10	TCGA-OR-A5JI-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3635255-1c8d-4532-b4ff-00d04a20ff79	6477b685-8285-40b9-ab7a-8faf6afd602e	.	CCDC102A-91	NM_033212	exon2	c.C286T	p.R96W	ACCACCGGCGCAT	.	4	4	0	0	G|0.001;A|0.999	0	0	0	0	0	A	57562804	G	A	57562804	3	1	15	1	0	0	0	0	1	0	0	0	2742	1115	39	1	1398	1	CCDC102A	16	57562804	Missense_Mutation	SNP	G	TCGA-OR-A5JI-01A-11D-A29I-10	27654371	57562804	32791949	48	3140										
PITPNA	5306	hgsc.bcm.edu	37	chr17	1465837	1465837	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0294117647058824	2	1	0.606012658227848	0.881472957422325	0.46172393007836	1	1	0	cggccgccggacactcactaCtccttgagcagcaccatgtc	9	17	1	1	rs142675143		TCGA-OR-A5JI-01A-11D-A29I-10	TCGA-OR-A5JI-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3635255-1c8d-4532-b4ff-00d04a20ff79	6477b685-8285-40b9-ab7a-8faf6afd602e	.	PITPNA-227	NM_006224	exon1	c.G18A	p.E6E	TCACTACTCCTTG	.	14	4	0	0	C|0.982;T|0.018	0	0	0	0	0	T	1465837	C	T	1465837	2	4	15	1	0	0	0	0	0	0	0	1	11976	564	20	3		3	PITPNA	17	1465837	Silent	SNP	C	TCGA-OR-A5JI-01A-11D-A29I-10		1465837	79729373	49	3141										
HIC1	3090	hgsc.bcm.edu	37	chr17	1960974	1960974	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0294117647058824	2	1	0.606012658227848	0.881472957422325	0.46172393007836	1	1	0	gacgagctgggccgggagcgCggctcccccagcgagcgctg	18	15	0	0	rs77393586		TCGA-OR-A5JI-01A-11D-A29I-10	TCGA-OR-A5JI-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3635255-1c8d-4532-b4ff-00d04a20ff79	6477b685-8285-40b9-ab7a-8faf6afd602e	.	HIC1-135	NM_001098202	exon2	c.C1047T	p.R349R	GGAGCGCGGCTCC	.	8	7	0	0	C|0.839;T|0.161	2	1	1	0	0	T	1960974	C	T	1960974	2	4	15	1	0	0	0	0	0	0	0	1	7122	755	27	1		1	HIC1	17	1960974	Silent	SNP	C	TCGA-OR-A5JI-01A-11D-A29I-10	495137	1960974	79234236	50	3142										
NLRP1	22861	bcgsc.ca	37	chr17	5436263	5436263	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0294117647058824	2	1	0.606012658227848	0.881472957422325	0.46172393007836	1	1	0	ttgagaggcaggagaaggcaCgcacaagagttccaccggta	14	9	0	3	rs2301582	byfrequency	TCGA-OR-A5JI-01A-11D-A29I-10	TCGA-OR-A5JI-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3635255-1c8d-4532-b4ff-00d04a20ff79	6477b685-8285-40b9-ab7a-8faf6afd602e	.	NLRP1-274	NM_001033053	exon11	c.G3187A	p.V1063M	AAGGCACGCACAA	.	135	5	130	0	C|0.738;T|0.261	2	2	0	0	0	T	5436263	C	T	5436263	3	4	15	1	0	0	0	0	1	0	0	0	10500	536	19	1	1337	1	NLRP1	17	5436263	Missense_Mutation	SNP	C	TCGA-OR-A5JI-01A-11D-A29I-10	3475289	5436263	75758947	51	3143										
MYO18A	399687	bcgsc.ca	37	chr17	27413578	27413578	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0294117647058824	2	1	0.606012658227848	0.881472957422325	0.46172393007836	1	1	0	ctctggttagcagcctccagGctttctagatccatctccta	7	14	3	1	novel		TCGA-OR-A5JI-01A-11D-A29I-10	TCGA-OR-A5JI-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3635255-1c8d-4532-b4ff-00d04a20ff79	6477b685-8285-40b9-ab7a-8faf6afd602e	.	MYO18A-22	NM_078471	exon39	c.C5730A	p.S1910R	CTCCAGGCTTTCT	.	72	4	64	0	.	1	1	0	0	0	T	27413578	G	T	27413578	3	4	15	1	0	0	0	0	1	0	0	0	10093	1194	42	3	450	3	MYO18A	17	27413578	Missense_Mutation	SNP	G	TCGA-OR-A5JI-01A-11D-A29I-10	21977315	27413578	53781632	52	3144										
ABCA5	23461	broad.mit.edu	37	chr17	67302911	67302912	+	Frame_Shift_Ins	INS	-	-	T													0.0294117647058824	2	1	0.606012658227848	0.881472957422325	0.46172393007836	1	1	0	tatctttaaaaattcttttaINStttttttttctttttctgct					novel		TCGA-OR-A5JI-01A-11D-A29I-10	TCGA-OR-A5JI-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3635255-1c8d-4532-b4ff-00d04a20ff79	6477b685-8285-40b9-ab7a-8faf6afd602e	.	ABCA5-93	NM_172232	exon6	c.743_744insA	p.I248fs	TCTTTTATTTTTT	.	7	2	14	0	.	0	0	0	0	0	T	67302912	-	T	67302911	7	5	15	1	0	1	1	0	0	0	0	0	35	449	16	0	4321	0	ABCA5	17	67302911	Frame_Shift_Ins	INS	-	TCGA-OR-A5JI-01A-11D-A29I-10	39889333	67302911	13892299	53	3145										
NPTX1	4884	hgsc.bcm.edu	37	chr17	78449948	78449948	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0294117647058824	2	1	0.606012658227848	0.881472957422325	0.46172393007836	1	1	0	cgccgcccgcccgggcctcgCcggctccggggtccagcgtg	16	20	0	0	rs144443274		TCGA-OR-A5JI-01A-11D-A29I-10	TCGA-OR-A5JI-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3635255-1c8d-4532-b4ff-00d04a20ff79	6477b685-8285-40b9-ab7a-8faf6afd602e	.	NPTX1-90	NM_002522	exon1	c.G299A	p.G100D	GCCTCGCCGGCTC	.	16	11	0	0	C|0.910;T|0.090	0	0	0	0	0	T	78449948	C	T	78449948	3	4	15	1	0	0	0	0	1	0	0	0	10631	739	26	3	1019	3	NPTX1	17	78449948	Missense_Mutation	SNP	C	TCGA-OR-A5JI-01A-11D-A29I-10	11147037	78449948	2745262	54	3146										
ANKRD30B	374860	bcgsc.ca	37	chr18	14779969	14779969	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.0294117647058824	2	1	0.606012658227848	0.881472957422325	0.46172393007836	1	1	0	acatttttagatcagatgttCccatcagaatccaaacgaga	6	9	2	4	rs9675365	byfrequency	TCGA-OR-A5JI-01A-11D-A29I-10	TCGA-OR-A5JI-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3635255-1c8d-4532-b4ff-00d04a20ff79	6477b685-8285-40b9-ab7a-8faf6afd602e	.	ANKRD30B-24	NM_001145029	exon11	c.C1431G	p.F477L	GATGTTCCCATCA	.	45	4	58	0	C|0.546;G|0.454	0	0	0	0	0	G	14779969	C	G	14779969	3	3	15	1	0	0	0	0	1	0	0	0	659	854	30	3	1473	3	ANKRD30B	18	14779969	Missense_Mutation	SNP	C	TCGA-OR-A5JI-01A-11D-A29I-10		14779969	63297279	55	3147										
RAX	30062	hgsc.bcm.edu	37	chr18	56936395	56936395	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0294117647058824	2	1	0.606012658227848	0.881472957422325	0.46172393007836	1	1	0	ggcggcggcggcgcgagaggTtgcaggccggggcccaacgg	22	12	0	1	rs7226481		TCGA-OR-A5JI-01A-11D-A29I-10	TCGA-OR-A5JI-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3635255-1c8d-4532-b4ff-00d04a20ff79	6477b685-8285-40b9-ab7a-8faf6afd602e	.	RAX-90	NM_013435	exon3	c.A882G	p.Q294Q	GAGAGGTTGCAGG	.	5	4	0	0	T|0.767;C|0.233	0	0	0	0	0	C	56936395	T	C	56936395	2	2	15	1	0	0	0	0	0	0	0	1	13131	1722	60	4		4	RAX	18	56936395	Silent	SNP	T	TCGA-OR-A5JI-01A-11D-A29I-10	42156426	56936395	21140853	56	3148										
CTDP1	9150	bcgsc.ca	37	chr18	77473086	77473086	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0294117647058824	2	1	0.606012658227848	0.881472957422325	0.46172393007836	1	1	0	tatgtatacttccagggcacGggtgatatgaatgcgccccc	11	11	0	2	rs599554	byfrequency	TCGA-OR-A5JI-01A-11D-A29I-10	TCGA-OR-A5JI-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3635255-1c8d-4532-b4ff-00d04a20ff79	6477b685-8285-40b9-ab7a-8faf6afd602e	.	CTDP1-90	NM_004715	exon7	c.G978A	p.T326T	GGGCACGGGTGAT	.	105	5	114	0	A|0.215;C|0.003	2	2	0	0	0	A	77473086	G	A	77473086	2	1	15	1	0	0	0	0	0	0	0	1	4008	1103	39	1		1	CTDP1	18	77473086	Silent	SNP	G	TCGA-OR-A5JI-01A-11D-A29I-10	20536691	77473086	604162	57	3149										
ABCA7	10347	hgsc.bcm.edu	37	chr19	1065044	1065044	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0294117647058824	2	1	0.606012658227848	0.881472957422325	0.46172393007836	1	1	0	ctgcgcgaggcacatggaggCcgcctgcgcttccagctgcc	14	16	0	0	rs4147935	byfrequency	TCGA-OR-A5JI-01A-11D-A29I-10	TCGA-OR-A5JI-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3635255-1c8d-4532-b4ff-00d04a20ff79	6477b685-8285-40b9-ab7a-8faf6afd602e	.	ABCA7-98	NM_019112	exon46	c.C6159T	p.G2053G	TGGAGGCCGCCTG	.	10	10	0	0	C|0.766;T|0.234	8	0	8	0	0	T	1065044	C	T	1065044	2	4	15	1	0	0	0	0	0	0	0	1	37	726	26	3		3	ABCA7	19	1065044	Silent	SNP	C	TCGA-OR-A5JI-01A-11D-A29I-10		1065044	58063939	58	3150										
UQCRFS1	7386	hgsc.bcm.edu	37	chr19	29704002	29704002	+	Silent	SNP	T	T	C													0.0294117647058824	2	1	0.606012658227848	0.881472957422325	0.46172393007836	1	1	0	aggacgggcgcgaacgggccTgagcgggatgctaccgacaa					rs11666764	byfrequency	TCGA-OR-A5JI-01A-11D-A29I-10	TCGA-OR-A5JI-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3635255-1c8d-4532-b4ff-00d04a20ff79	6477b685-8285-40b9-ab7a-8faf6afd602e	.	UQCRFS1-226	NM_006003	exon1	c.A24G	p.S8S	CGGGCCTGAGCGG	.	4	4	0	0	T|0.072;C|0.928	0	0	0	0	0	C	29704002	T	C	29704002	2	2	15	1	0	0	0	0	0	0	0	1	17059	1567	55	4		4	UQCRFS1	19	29704002	Silent	SNP	T	TCGA-OR-A5JI-01A-11D-A29I-10	28638958	29704002	29424981	59	3151	27	2								
UQCRFS1	7386	hgsc.bcm.edu	37	chr19	29704010	29704010	+	Missense_Mutation	SNP	A	A	C													0.0294117647058824	2	1	0.606012658227848	0.881472957422325	0.46172393007836	1	1	0	cgcgaacgggcctgagcgggAtgctaccgacaacatggcga					rs8100724	byfrequency	TCGA-OR-A5JI-01A-11D-A29I-10	TCGA-OR-A5JI-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3635255-1c8d-4532-b4ff-00d04a20ff79	6477b685-8285-40b9-ab7a-8faf6afd602e	.	UQCRFS1-226	NM_006003	exon1	c.T16G	p.S6A	AGCGGGATGCTAC	.	4	4	0	0	A|0.065;C|0.935	0	0	0	0	0	C	29704010	A	C	29704010	3	2	15	1	0	0	0	0	1	0	0	0	17059	333	12	5	816	5	UQCRFS1	19	29704010	Missense_Mutation	SNP	A	TCGA-OR-A5JI-01A-11D-A29I-10	8	29704010	29424973	60	3152	27	2								
SIPA1L3	23094	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	38696869	38696869	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0294117647058824	2	1	0.606012658227848	0.881472957422325	0.46172393007836	1	1	0	agatcttctgcagggagaagAaggagctctgaggtgggagg	18	5	3	4	novel		TCGA-OR-A5JI-01A-11D-A29I-10	TCGA-OR-A5JI-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3635255-1c8d-4532-b4ff-00d04a20ff79	6477b685-8285-40b9-ab7a-8faf6afd602e	.	SIPA1L3-91	NM_015073	exon22	c.A5335G	p.K1779E	GAGAAGAAGGAGC	.	485	55	211	2	.	3	3	0	0	0	G	38696869	A	G	38696869	3	3	15	1	0	0	0	0	1	0	0	0	14366	247	9	4	5413	4	SIPA1L3	19	38696869	Missense_Mutation	SNP	A	TCGA-OR-A5JI-01A-11D-A29I-10	8992859	38696869	20432114	61	3153										
FBXO17	115290	hgsc.bcm.edu	37	chr19	39440918	39440918	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0294117647058824	2	1	0.606012658227848	0.881472957422325	0.46172393007836	1	1	0	agcgcgtccagggccagggaTgggtccgccggcagccgtcg	18	14	0	0	rs2304117	byfrequency	TCGA-OR-A5JI-01A-11D-A29I-10	TCGA-OR-A5JI-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3635255-1c8d-4532-b4ff-00d04a20ff79	6477b685-8285-40b9-ab7a-8faf6afd602e	.	FBXO17-226	NM_148169	exon2	c.A69G	p.P23P	CAGGGATGGGTCC	.	15	8	1	0	T|0.545;C|0.455	0	0	0	0	0	C	39440918	T	C	39440918	2	2	15	1	0	0	0	0	0	0	0	1	5749	1451	51	4		4	FBXO17	19	39440918	Silent	SNP	T	TCGA-OR-A5JI-01A-11D-A29I-10	744049	39440918	19688065	62	3154										
KLK11	11012	bcgsc.ca	37	chr19	51530741	51530741	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0294117647058824	2	1	0.606012658227848	0.881472957422325	0.46172393007836	1	1	0	gtgagacctctgcccgatgaCttccagtcccgcagccacct	9	17	1	2	rs61752567	byfrequency	TCGA-OR-A5JI-01A-11D-A29I-10	TCGA-OR-A5JI-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3635255-1c8d-4532-b4ff-00d04a20ff79	6477b685-8285-40b9-ab7a-8faf6afd602e	.	KLK11-650	NM_144947	exon1	c.G33C	p.K11N	CGATGACTTCCAG	.	140	5	105	0	C|0.927;G|0.073	0	0	0	0	0	G	51530741	C	G	51530741	3	3	15	1	0	0	0	0	1	0	0	0	8420	564	20	3	914	3	KLK11	19	51530741	Missense_Mutation	SNP	C	TCGA-OR-A5JI-01A-11D-A29I-10	12089823	51530741	7598242	63	3155										
FPR1	2357	broad.mit.edu	37	chr19	52249473	52249473	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0294117647058824	2	1	0.606012658227848	0.881472957422325	0.46172393007836	1	1	0	tgtggctataagggccaccaCctgatatggggaccagcaga	13	10	0	2	novel		TCGA-OR-A5JI-01A-11D-A29I-10	TCGA-OR-A5JI-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3635255-1c8d-4532-b4ff-00d04a20ff79	6477b685-8285-40b9-ab7a-8faf6afd602e	.	FPR1-524	NM_001193306	exon3	c.G775C	p.V259L	CCACCACCTGATA	.	182	5	135	0	.	2	2	0	0	0	G	52249473	C	G	52249473	3	3	15	1	0	0	0	0	1	0	0	0	6057	507	18	3	281	3	FPR1	19	52249473	Missense_Mutation	SNP	C	TCGA-OR-A5JI-01A-11D-A29I-10	718732	52249473	6879510	64	3156										
NLRP4	147945	bcgsc.ca	37	chr19	56369593	56369593	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0294117647058824	2	1	0.606012658227848	0.881472957422325	0.46172393007836	1	1	0	gaggcctccctgctcatcgcTatcaaacccgtgtgcccgaa	9	16	2	0	rs421810	byfrequency	TCGA-OR-A5JI-01A-11D-A29I-10	TCGA-OR-A5JI-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3635255-1c8d-4532-b4ff-00d04a20ff79	6477b685-8285-40b9-ab7a-8faf6afd602e	.	NLRP4-216	NM_134444	exon3	c.T834C	p.A278A	CATCGCTATCAAA	.	116	5	124	0	T|0.546;C|0.454	0	0	0	0	0	C	56369593	T	C	56369593	2	2	15	1	0	0	0	0	0	0	0	1	10508	1509	53	4		4	NLRP4	19	56369593	Silent	SNP	T	TCGA-OR-A5JI-01A-11D-A29I-10	4120120	56369593	2759390	65	3157										
CDH4	1002	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr20	60427870	60427870	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0294117647058824	2	1	0.606012658227848	0.881472957422325	0.46172393007836	1	1	0	agaaccccatcgacctgtacAtctacgtcatcgacatgaat	6	13	2	2	novel		TCGA-OR-A5JI-01A-11D-A29I-10	TCGA-OR-A5JI-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3635255-1c8d-4532-b4ff-00d04a20ff79	6477b685-8285-40b9-ab7a-8faf6afd602e	.	CDH4-282	NM_001794	exon6	c.A793G	p.I265V	CTGTACATCTACG	.	444	69	237	1	.	0	0	0	0	0	G	60427870	A	G	60427870	3	3	15	1	0	0	0	0	1	0	0	0	3118	217	8	4	815	4	CDH4	20	60427870	Missense_Mutation	SNP	A	TCGA-OR-A5JI-01A-11D-A29I-10		60427870	2597650	66	3158										
RTDR1	27156	bcgsc.ca	37	chr22	23482483	23482483	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0294117647058824	2	1	0.606012658227848	0.881472957422325	0.46172393007836	1	1	0	ccatgagggctttctgcctcGtctggaggtcctctgactgc	12	13	3	2	rs35211242	byfrequency	TCGA-OR-A5JI-01A-11D-A29I-10	TCGA-OR-A5JI-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3635255-1c8d-4532-b4ff-00d04a20ff79	6477b685-8285-40b9-ab7a-8faf6afd602e	.	RTDR1-516	NM_014433	exon2	c.C125T	p.T42M	TGCCTCGTCTGGA	.	123	7	149	0	G|0.894;A|0.106	0	0	0	0	0	A	23482483	G	A	23482483	3	1	15	1	0	0	0	0	1	0	0	0	13754	1145	40	1	945	1	RTDR1	22	23482483	Missense_Mutation	SNP	G	TCGA-OR-A5JI-01A-11D-A29I-10		23482483	27822083	67	3159										
ASPHD2	57168	bcgsc.ca	37	chr22	26830285	26830285	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0294117647058824	2	1	0.606012658227848	0.881472957422325	0.46172393007836	1	1	0	gttcaccttttacttggtcaAtcagggggtttgtgttccca	10	9	3	0	rs34902186	byfrequency	TCGA-OR-A5JI-01A-11D-A29I-10	TCGA-OR-A5JI-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3635255-1c8d-4532-b4ff-00d04a20ff79	6477b685-8285-40b9-ab7a-8faf6afd602e	.	ASPHD2-69	NM_020437	exon2	c.A704G	p.N235S	TGGTCAATCAGGG	.	136	7	252	0	A|0.946;G|0.054	1	1	0	0	0	G	26830285	A	G	26830285	3	3	15	1	0	0	0	0	1	0	0	0	1056	101	4	4	706	4	ASPHD2	22	26830285	Missense_Mutation	SNP	A	TCGA-OR-A5JI-01A-11D-A29I-10	3347802	26830285	24474281	68	3160										
SSX1	6756	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	48123217	48123217	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0294117647058824	2	1	0.606012658227848	0.881472957422325	0.46172393007836	1	1	0	gtaaccttcacattataaagAtcatgcccaagaagccagca	6	11	2	2	novel		TCGA-OR-A5JI-01A-11D-A29I-10	TCGA-OR-A5JI-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3635255-1c8d-4532-b4ff-00d04a20ff79	6477b685-8285-40b9-ab7a-8faf6afd602e	.	SSX1-522	NM_005635	exon6	c.A331T	p.I111F	ATAAAGATCATGC	.	210	29	169	0	.	0	0	0	0	0	T	48123217	A	T	48123217	3	4	15	1	0	0	0	0	1	0	0	0	15240	347	12	5	349	5	SSX1	23	48123217	Missense_Mutation	SNP	A	TCGA-OR-A5JI-01A-11D-A29I-10		48123217	107147343	69	3161										
ZC3H12B	340554	broad.mit.edu	37	chrX	64719018	64719018	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0294117647058824	2	1	0.606012658227848	0.881472957422325	0.46172393007836	1	1	0	gattctgatggcatcattgtGtccaatgataactaccgaga	9	8	2	3	novel		TCGA-OR-A5JI-01A-11D-A29I-10	TCGA-OR-A5JI-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3635255-1c8d-4532-b4ff-00d04a20ff79	6477b685-8285-40b9-ab7a-8faf6afd602e	.	ZC3H12B-131	NM_001010888	exon3	c.G888T	p.V296V	CATTGTGTCCAAT	.	138	4	101	0	.	0	0	0	0	0	T	64719018	G	T	64719018	2	4	15	1	0	0	0	0	0	0	0	1	17599	1364	48	3		3	ZC3H12B	23	64719018	Silent	SNP	G	TCGA-OR-A5JI-01A-11D-A29I-10	16595801	64719018	90551542	70	3162										
PRKCZ	5590	bcgsc.ca	37	chr1	2103506	2103506	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0776699029126214	8	0.467760285596346	1.77087378640777	3.80461165048544	0.936519790888723	0.637186343068696	1	0	acccccaggttctacgcggcCgagatctgcatcgccctcaa	9	17	3	1	rs2280272	byfrequency	TCGA-OR-A5JK-01A-11D-A29I-10	TCGA-OR-A5JK-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	30ef35e3-dbfe-4e8d-a398-fa59ec891031	9f7d2d3c-956c-4894-ba05-6349fc18bec2	.	PRKCZ-1465	NM_002744	exon12	c.C1074G	p.A358A	CGCGGCCGAGATC	.	80	6	99	1	C|0.994;G|0.006	10	10	0	0	0	G	2103506	C	G	2103506	2	3	16	1	0	0	0	0	0	0	0	1	12549	639	23	2		2	PRKCZ	1	2103506	Silent	SNP	C	TCGA-OR-A5JK-01A-11D-A29I-10		2103506	247147115	1	3163										
HES3	390992	hgsc.bcm.edu	37	chr1	6305292	6305292	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0776699029126214	8	0.467760285596346	1.77087378640777	3.80461165048544	0.936519790888723	0.637186343068696	1	0	gcctgcgctgccccctggtgCccgagagcgccgccggcagc	15	19	0	1	rs61760836		TCGA-OR-A5JK-01A-11D-A29I-10	TCGA-OR-A5JK-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	30ef35e3-dbfe-4e8d-a398-fa59ec891031	9f7d2d3c-956c-4894-ba05-6349fc18bec2	.	HES3-514	NM_001024598	exon4	c.C286A	p.P96T	CTGGTGCCCGAGA	.	7	7	0	0	C|0.430;A|0.570	0	0	0	0	0	A	6305292	C	A	6305292	3	1	16	1	0	0	0	0	1	0	0	0	7088	739	26	3	296	3	HES3	1	6305292	Missense_Mutation	SNP	C	TCGA-OR-A5JK-01A-11D-A29I-10	4201786	6305292	242945329	2	3164			1	10		2	2	12	C		3.659881e-05
HES3	390992	hgsc.bcm.edu	37	chr1	6305303	6305303	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0776699029126214	8	0.467760285596346	1.77087378640777	3.80461165048544	0.936519790888723	0.637186343068696	1	0	cccctggtgcccgagagcgcCgccggcagcaccatggacag	14	17	0	1	rs61760837		TCGA-OR-A5JK-01A-11D-A29I-10	TCGA-OR-A5JK-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	30ef35e3-dbfe-4e8d-a398-fa59ec891031	9f7d2d3c-956c-4894-ba05-6349fc18bec2	.	HES3-514	NM_001024598	exon4	c.C297A	p.A99A	GAGCGCCGCCGGC	.	5	5	0	0	C|0.438;A|0.562	0	0	0	0	0	A	6305303	C	A	6305303	2	1	16	1	0	0	0	0	0	0	0	1	7088	639	23	2		2	HES3	1	6305303	Silent	SNP	C	TCGA-OR-A5JK-01A-11D-A29I-10	11	6305303	242945318	3	3165			1	10		2	2	12	C		3.659881e-05
H6PD	9563	bcgsc.ca	37	chr1	9307033	9307033	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0776699029126214	8	0.467760285596346	1.77087378640777	3.80461165048544	0.936519790888723	0.637186343068696	1	0	cccccccgacaggctgtggcGcagatcctgcctttccgaga	11	17	0	2	rs7524046	byfrequency	TCGA-OR-A5JK-01A-11D-A29I-10	TCGA-OR-A5JK-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	30ef35e3-dbfe-4e8d-a398-fa59ec891031	9f7d2d3c-956c-4894-ba05-6349fc18bec2	.	H6PD-90	NM_004285	exon3	c.G636A	p.A212A	TGTGGCGCAGATC	.	72	4	121	1	G|0.772;A|0.228	0	0	0	0	0	A	9307033	G	A	9307033	2	1	16	1	0	0	0	0	0	0	0	1	6957	1074	38	1		1	H6PD	1	9307033	Silent	SNP	G	TCGA-OR-A5JK-01A-11D-A29I-10	3001730	9307033	239943588	4	3166										
KIF17	57576	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	21013968	21013968	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0776699029126214	8	0.467760285596346	1.77087378640777	3.80461165048544	0.936519790888723	0.637186343068696	1	0	gccagcttggcttccacctcGgcaaacgggtcctgcaggcc	12	16	0	0	novel		TCGA-OR-A5JK-01A-11D-A29I-10	TCGA-OR-A5JK-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	30ef35e3-dbfe-4e8d-a398-fa59ec891031	9f7d2d3c-956c-4894-ba05-6349fc18bec2	.	KIF17-94	NM_001122819	exon8	c.C1851T	p.A617A	CACCTCGGCAAAC	.	67	37	117	0	.	0	0	0	0	0	A	21013968	G	A	21013968	2	1	16	1	0	0	0	0	0	0	0	1	8300	1103	39	1		1	KIF17	1	21013968	Silent	SNP	G	TCGA-OR-A5JK-01A-11D-A29I-10	11706935	21013968	228236653	5	3167										
LUZP1	7798	bcgsc.ca	37	chr1	23418803	23418803	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.0776699029126214	8	0.467760285596346	1.77087378640777	3.80461165048544	0.936519790888723	0.637186343068696	1	0	ctggcttctctctgccactgGatttgatgactcgacacctc	8	14	2	2	rs35645814	byfrequency	TCGA-OR-A5JK-01A-11D-A29I-10	TCGA-OR-A5JK-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	30ef35e3-dbfe-4e8d-a398-fa59ec891031	9f7d2d3c-956c-4894-ba05-6349fc18bec2	.	LUZP1-90	NM_033631	exon4	c.C1952G	p.S651C	CCACTGGATTTGA	.	173	6	202	0	G|0.991;C|0.009	0	0	0	0	0	C	23418803	G	C	23418803	3	2	16	1	0	0	0	0	1	0	0	0	9113	1174	41	3	1286	3	LUZP1	1	23418803	Missense_Mutation	SNP	G	TCGA-OR-A5JK-01A-11D-A29I-10	2404835	23418803	225831818	6	3168										
FOXD3	27022	hgsc.bcm.edu	37	chr1	63788951	63788951	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0776699029126214	8	0.467760285596346	1.77087378640777	3.80461165048544	0.936519790888723	0.637186343068696	1	0	cacggacagcctcagccgccCcaccagcagcccctgacatt	8	20	1	1	rs2274187	bycluster;byfrequency;by1000genomes	TCGA-OR-A5JK-01A-11D-A29I-10	TCGA-OR-A5JK-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	30ef35e3-dbfe-4e8d-a398-fa59ec891031	9f7d2d3c-956c-4894-ba05-6349fc18bec2	.	FOXD3-226	NM_012183	exon1	c.C222A	p.P74P	GCCGCCCCACCAG	.	19	15	4	0	C|0.842;A|0.158	0	0	0	0	0	A	63788951	C	A	63788951	2	1	16	1	0	0	0	0	0	0	0	1	6017	610	22	3		3	FOXD3	1	63788951	Silent	SNP	C	TCGA-OR-A5JK-01A-11D-A29I-10	40370148	63788951	185461670	7	3169										
CTBS	1486	hgsc.bcm.edu	37	chr1	85040024	85040024	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0776699029126214	8	0.467760285596346	1.77087378640777	3.80461165048544	0.936519790888723	0.637186343068696	1	0	gccagcagcgccagcagcgcCagcagcgctagacccgggac	14	17	0	1	novel		TCGA-OR-A5JK-01A-11D-A29I-10	TCGA-OR-A5JK-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	30ef35e3-dbfe-4e8d-a398-fa59ec891031	9f7d2d3c-956c-4894-ba05-6349fc18bec2	.	CTBS-90	NM_004388	exon1	c.G75A	p.L25L	CAGCGCCAGCAGC	.	36	3	8	0	.	1	1	0	0	0	T	85040024	C	T	85040024	2	4	16	1	0	0	0	0	0	0	0	1	4005	581	21	3		3	CTBS	1	85040024	Silent	SNP	C	TCGA-OR-A5JK-01A-11D-A29I-10	21251073	85040024	164210597	8	3170										
BPNT1	10380	hgsc.bcm.edu	37	chr1	220236230	220236230	+	Missense_Mutation	SNP	G	G	C													0.0776699029126214	8	0.467760285596346	1.77087378640777	3.80461165048544	0.936519790888723	0.637186343068696	1	0	agcagggacttctttcagctGaaacccaaaggcgcctaaac					novel		TCGA-OR-A5JK-01A-11D-A29I-10	TCGA-OR-A5JK-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	30ef35e3-dbfe-4e8d-a398-fa59ec891031	9f7d2d3c-956c-4894-ba05-6349fc18bec2	.	BPNT1-91	NM_006085	exon7	c.C541G	p.Q181E	TCAGCTGAAACCC	.	118	31	228	1	.	0	0	0	0	0	C	220236230	G	C	220236230	3	2	16	1	0	0	0	0	1	0	0	0	1497	1299	45	3	397	3	BPNT1	1	220236230	Missense_Mutation	SNP	G	TCGA-OR-A5JK-01A-11D-A29I-10	135196206	220236230	29014391	9	3171	28	3								
BPNT1	10380	hgsc.bcm.edu	37	chr1	220236234	220236255	+	Frame_Shift_Del	DEL	CCCAAAGGCGCCTAAACCTAAA	CCCAAAGGCGCCTAAACCTAAA	-													0.0776699029126214	8	0.467760285596346	1.77087378640777	3.80461165048544	0.936519790888723	0.637186343068696	1	0	gggacttctttcagctgaaaCccaaaggcgcctaaacctaa					novel		TCGA-OR-A5JK-01A-11D-A29I-10	TCGA-OR-A5JK-10A-01D-A29L-10	CCCAAAGGCGCCTAAACCTAAA	CCCAAAGGCGCCTAAACCTAAA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	30ef35e3-dbfe-4e8d-a398-fa59ec891031	9f7d2d3c-956c-4894-ba05-6349fc18bec2	.	BPNT1-91	NM_006085	exon7	c.516_537del	p.172_179del	CTGAAACCCAAAG	.	110	0	225	0	.	0	0	0	0	0	-	220236255	CCCAAAGGCGCCTAAACCTAAA	-	220236234	7	5	16	1	0	1	0	1	0	0	0	0	1497	494	18	0	401	0	BPNT1	1	220236234	Frame_Shift_Del	DEL	CCCAAAGGCGCCTAAACCTAAA	TCGA-OR-A5JK-01A-11D-A29I-10	4	220236234	29014387	10	3172	28	3								
BPNT1	10380	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	220236235	220236252	+	In_Frame_Del	DEL	CCAAAGGCGCCTAAACCT	CCAAAGGCGCCTAAACCT	-													0.0776699029126214	8	0.467760285596346	1.77087378640777	3.80461165048544	0.936519790888723	0.637186343068696	1	0	ggacttctttcagctgaaacCcaaaggcgcctaaacctaaa					novel		TCGA-OR-A5JK-01A-11D-A29I-10	TCGA-OR-A5JK-10A-01D-A29L-10	CCAAAGGCGCCTAAACCT	CCAAAGGCGCCTAAACCT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	30ef35e3-dbfe-4e8d-a398-fa59ec891031	9f7d2d3c-956c-4894-ba05-6349fc18bec2	.	BPNT1-91	NM_006085	exon7	c.519_536del	p.173_179del	TGAAACCCAAAGG	.	95	23	222	0	.	0	0	0	0	0	-	220236252	CCAAAGGCGCCTAAACCT	-	220236235	7	5	16	1	0	1	0	1	0	0	0	0	1497	623	22	0	402	0	BPNT1	1	220236235	In_Frame_Del	DEL	CCAAAGGCGCCTAAACCT	TCGA-OR-A5JK-01A-11D-A29I-10	1	220236235	29014386	11	3173	28	3								
IRF2BP2	359948	hgsc.bcm.edu	37	chr1	234744413	234744413	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0776699029126214	8	0.467760285596346	1.77087378640777	3.80461165048544	0.936519790888723	0.637186343068696	1	0	ctcagctcggcggccccggcCgcggtggacaggctgtcggc	17	16	1	0	rs4636	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-OR-A5JK-01A-11D-A29I-10	TCGA-OR-A5JK-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	30ef35e3-dbfe-4e8d-a398-fa59ec891031	9f7d2d3c-956c-4894-ba05-6349fc18bec2	.	IRF2BP2-90	NM_182972	exon1	c.G828T	p.A276A	CCCGGCCGCGGTG	.	12	11	0	0	C|0.714;A|0.286	10	0	10	0	0	A	234744413	C	A	234744413	2	1	16	1	0	0	0	0	0	0	0	1	7851	639	23	2		2	IRF2BP2	1	234744413	Silent	SNP	C	TCGA-OR-A5JK-01A-11D-A29I-10	14508178	234744413	14506208	12	3174										
SIX3	6496	hgsc.bcm.edu	37	chr2	45171842	45171842	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0776699029126214	8	0.467760285596346	1.77087378640777	3.80461165048544	0.936519790888723	0.637186343068696	1	0	tccagcctgacggagcgcgcAgacaccggcacctccatcct	10	18	0	2	rs62840660	byfrequency	TCGA-OR-A5JK-01A-11D-A29I-10	TCGA-OR-A5JK-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	30ef35e3-dbfe-4e8d-a398-fa59ec891031	9f7d2d3c-956c-4894-ba05-6349fc18bec2	.	SIX3-90	NM_005413	exon2	c.A942G	p.A314A	GCGCGCAGACACC	.	8	5	1	0	A|0.059;G|0.941	0	0	0	0	0	G	45171842	A	G	45171842	2	3	16	1	0	0	0	0	0	0	0	1	14383	175	7	4		4	SIX3	2	45171842	Silent	SNP	A	TCGA-OR-A5JK-01A-11D-A29I-10		45171842	198027531	13	3175										
STON1	11037	bcgsc.ca	37	chr2	48809593	48809593	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0776699029126214	8	0.467760285596346	1.77087378640777	3.80461165048544	0.936519790888723	0.637186343068696	1	0	gcatgtctggggagtttacaGgaacttgaatctgaacctgt	12	7	2	2	rs3792234	byfrequency	TCGA-OR-A5JK-01A-11D-A29I-10	TCGA-OR-A5JK-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	30ef35e3-dbfe-4e8d-a398-fa59ec891031	9f7d2d3c-956c-4894-ba05-6349fc18bec2	.	STON1-91	NM_001198595	exon3	c.G1821T	p.Q607H	TTTACAGGAACTT	.	143	6	159	0	G|0.570;T|0.430	0	0	0	0	0	T	48809593	G	T	48809593	3	4	16	1	0	0	0	0	1	0	0	0	15353	991	35	3	1823	3	STON1	2	48809593	Missense_Mutation	SNP	G	TCGA-OR-A5JK-01A-11D-A29I-10	3637751	48809593	194389780	14	3176										
ASTL	431705	bcgsc.ca	37	chr2	96795857	96795857	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0776699029126214	8	0.467760285596346	1.77087378640777	3.80461165048544	0.936519790888723	0.637186343068696	1	0	gcgtcagcatgttgctgctcTgagacttgatgaagttgatt	12	7	2	4	rs749458	byfrequency	TCGA-OR-A5JK-01A-11D-A29I-10	TCGA-OR-A5JK-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	30ef35e3-dbfe-4e8d-a398-fa59ec891031	9f7d2d3c-956c-4894-ba05-6349fc18bec2	.	ASTL-90	NM_001002036	exon7	c.A665G	p.Q222R	CTGCTCTGAGACT	.	153	6	224	3	T|0.132;C|0.868	0	0	0	0	0	C	96795857	T	C	96795857	3	2	16	1	0	0	0	0	1	0	0	0	1064	1580	55	4	641	4	ASTL	2	96795857	Missense_Mutation	SNP	T	TCGA-OR-A5JK-01A-11D-A29I-10	47986264	96795857	146403516	15	3177										
UGGT1	56886	bcgsc.ca	37	chr2	128934400	128934400	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0776699029126214	8	0.467760285596346	1.77087378640777	3.80461165048544	0.936519790888723	0.637186343068696	1	0	tcgcaaagccacgatggcacTgattctccccctgatgctga	9	14	1	3	rs2290111	byfrequency	TCGA-OR-A5JK-01A-11D-A29I-10	TCGA-OR-A5JK-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	30ef35e3-dbfe-4e8d-a398-fa59ec891031	9f7d2d3c-956c-4894-ba05-6349fc18bec2	.	UGGT1-91	NM_020120	exon32	c.T3552C	p.T1184T	TGGCACTGATTCT	.	154	7	211	2	T|0.323;C|0.677	0	0	0	0	0	C	128934400	T	C	128934400	2	2	16	1	0	0	0	0	0	0	0	1	16979	1567	55	4		4	UGGT1	2	128934400	Silent	SNP	T	TCGA-OR-A5JK-01A-11D-A29I-10	32138543	128934400	114264973	16	3178										
NCKAP5	344148	ucsc.edu;bcgsc.ca	37	chr2	133541575	133541575	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0776699029126214	8	0.467760285596346	1.77087378640777	3.80461165048544	0.936519790888723	0.637186343068696	1	0	gggcctggccagcagggagaCggacctgcctggagggggcg	21	11	0	1	rs12611515	byfrequency	TCGA-OR-A5JK-01A-11D-A29I-10	TCGA-OR-A5JK-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	30ef35e3-dbfe-4e8d-a398-fa59ec891031	9f7d2d3c-956c-4894-ba05-6349fc18bec2	.	.	NM_207363	exon14	c.G2809A	p.V937I	GGGAGACGGACCT	.	32	4	27	0	C|0.618;T|0.382	0	0	0	0	0	T	133541575	C	T	133541575	3	4	16	1	0	0	0	0	1	0	0	0	10252	536	19	1	2948	1	NCKAP5	2	133541575	Missense_Mutation	SNP	C	TCGA-OR-A5JK-01A-11D-A29I-10	4607175	133541575	109657798	17	3179										
NEB	4703	bcgsc.ca	37	chr2	152499355	152499355	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0776699029126214	8	0.467760285596346	1.77087378640777	3.80461165048544	0.936519790888723	0.637186343068696	1	0	taatgtggacagtggttttaTctttatcccaagcttctgta	8	7	2	0	rs76767949	byfrequency	TCGA-OR-A5JK-01A-11D-A29I-10	TCGA-OR-A5JK-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	30ef35e3-dbfe-4e8d-a398-fa59ec891031	9f7d2d3c-956c-4894-ba05-6349fc18bec2	.	NEB-145	NM_004543	exon59	c.A8189G	p.D2730G	GTTTTATCTTTAT	.	68	5	48	0	T|0.974;C|0.026	0	0	0	0	0	C	152499355	T	C	152499355	3	2	16	1	0	0	0	0	1	0	0	0	10331	1435	50	4	17993	4	NEB	2	152499355	Missense_Mutation	SNP	T	TCGA-OR-A5JK-01A-11D-A29I-10	18957780	152499355	90700018	18	3180										
PGAP1	80055	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	197707448	197707448	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0776699029126214	8	0.467760285596346	1.77087378640777	3.80461165048544	0.936519790888723	0.637186343068696	1	0	agattaaactactgtaccttGattttattgaaacagtgtaa	6	5	0	3	novel		TCGA-OR-A5JK-01A-11D-A29I-10	TCGA-OR-A5JK-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	30ef35e3-dbfe-4e8d-a398-fa59ec891031	9f7d2d3c-956c-4894-ba05-6349fc18bec2	.	PGAP1-93	NM_024989	exon26	c.C2627G	p.S876X	TACCTTGATTTTA	.	152	99	203	0	.	0	0	0	0	0	C	197707448	G	C	197707448	4	2	16	1	0	0	0	0	0	1	0	0	11806	1294	45	3	149	3	PGAP1	2	197707448	Nonsense_Mutation	SNP	G	TCGA-OR-A5JK-01A-11D-A29I-10	45208093	197707448	45491925	19	3181										
ALPPL2	251	hgsc.bcm.edu	37	chr2	233274476	233274476	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0776699029126214	8	0.467760285596346	1.77087378640777	3.80461165048544	0.936519790888723	0.637186343068696	1	0	cgcctgcgacctggcgccccGcgccggcaccaccgacgccg	13	22	0	0	rs61730278	byfrequency	TCGA-OR-A5JK-01A-11D-A29I-10	TCGA-OR-A5JK-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	30ef35e3-dbfe-4e8d-a398-fa59ec891031	9f7d2d3c-956c-4894-ba05-6349fc18bec2	.	ALPPL2-91	NM_031313	exon11	c.G1493C	p.R498P	CGCCCCGCGCCGG	.	23	21	0	0	G|0.946;C|0.054	0	0	0	0	0	C	233274476	G	C	233274476	3	2	16	1	0	0	0	0	1	0	0	0	549	1087	38	2	1535	2	ALPPL2	2	233274476	Missense_Mutation	SNP	G	TCGA-OR-A5JK-01A-11D-A29I-10	35567028	233274476	9924897	20	3182										
C3orf17	25871	ucsc.edu	37	chr3	112730187	112730187	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0776699029126214	8	0.467760285596346	1.77087378640777	3.80461165048544	0.936519790888723	0.637186343068696	1	0	ggttgaatcctagcgacctcTtgaagcaatccaaacaaagg	9	10	1	2	novel		TCGA-OR-A5JK-01A-11D-A29I-10	TCGA-OR-A5JK-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	30ef35e3-dbfe-4e8d-a398-fa59ec891031	9f7d2d3c-956c-4894-ba05-6349fc18bec2	.	C3orf17-90	NM_015412	exon6	c.A618G	p.Q206Q	GACCTCTTGAAGC	.	28	4	30	0	.	3	3	0	0	0	C	112730187	T	C	112730187	2	2	16	1	0	0	0	0	0	0	0	1	2216	1606	56	4		4	C3orf17	3	112730187	Silent	SNP	T	TCGA-OR-A5JK-01A-11D-A29I-10		112730187	85292243	21	3183										
EVC	2121	bcgsc.ca	37	chr4	5795412	5795412	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0776699029126214	8	0.467760285596346	1.77087378640777	3.80461165048544	0.936519790888723	0.637186343068696	1	0	cacgagggcaccatccgcggCgtcttgggccgactgggcgg	17	14	1	0	rs11737221	byfrequency	TCGA-OR-A5JK-01A-11D-A29I-10	TCGA-OR-A5JK-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	30ef35e3-dbfe-4e8d-a398-fa59ec891031	9f7d2d3c-956c-4894-ba05-6349fc18bec2	.	EVC-92	NM_153717	exon13	c.C1854T	p.G618G	CCGCGGCGTCTTG	.	167	9	134	1	C|0.742;T|0.258	0	0	0	0	0	T	5795412	C	T	5795412	2	4	16	1	0	0	0	0	0	0	0	1	5298	755	27	1		1	EVC	4	5795412	Silent	SNP	C	TCGA-OR-A5JK-01A-11D-A29I-10		5795412	185358864	22	3184										
RBM47	54502	hgsc.bcm.edu	37	chr4	40440854	40440854	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0776699029126214	8	0.467760285596346	1.77087378640777	3.80461165048544	0.936519790888723	0.637186343068696	1	0	acgccctcgggcaccttggcGgaggacccggcggccgagtc	16	16	0	0	rs1052153	byfrequency	TCGA-OR-A5JK-01A-11D-A29I-10	TCGA-OR-A5JK-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	30ef35e3-dbfe-4e8d-a398-fa59ec891031	9f7d2d3c-956c-4894-ba05-6349fc18bec2	.	RBM47-25	NM_001098634	exon4	c.C57G	p.S19S	CTTGGCGGAGGAC	.	10	5	0	0	G|0.794;C|0.206	1	1	0	0	0	C	40440854	G	C	40440854	2	2	16	1	0	0	0	0	0	0	0	1	13176	1103	39	2		2	RBM47	4	40440854	Silent	SNP	G	TCGA-OR-A5JK-01A-11D-A29I-10	34645442	40440854	150713422	23	3185										
AREG	374	broad.mit.edu;bcgsc.ca	37	chr4	75482066	75482066	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0776699029126214	8	0.467760285596346	1.77087378640777	3.80461165048544	0.936519790888723	0.637186343068696	1	0	tgggaagcgtgaaccattttCtggggaccacagtgctgatg	14	8	1	2	novel		TCGA-OR-A5JK-01A-11D-A29I-10	TCGA-OR-A5JK-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	30ef35e3-dbfe-4e8d-a398-fa59ec891031	9f7d2d3c-956c-4894-ba05-6349fc18bec2	.	AREG-946	NM_001657	exon2	c.C122T	p.S41F	CATTTTCTGGGGA	.	976	90	823	0	.	0	0	0	0	0	T	75482066	C	T	75482066	3	4	16	1	0	0	0	0	1	0	0	0	843	913	32	3	907	3	AREG	4	75482066	Missense_Mutation	SNP	C	TCGA-OR-A5JK-01A-11D-A29I-10	35041212	75482066	115672210	24	3186										
SHROOM3	57619	hgsc.bcm.edu	37	chr4	77662248	77662248	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0776699029126214	8	0.467760285596346	1.77087378640777	3.80461165048544	0.936519790888723	0.637186343068696	1	0	ctgcggagccccgaggcgtcGgcctccgcctccccgcacac	12	21	0	0	rs60216375	byfrequency	TCGA-OR-A5JK-01A-11D-A29I-10	TCGA-OR-A5JK-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	30ef35e3-dbfe-4e8d-a398-fa59ec891031	9f7d2d3c-956c-4894-ba05-6349fc18bec2	.	SHROOM3-93	NM_020859	exon5	c.G2922A	p.S974S	GGCGTCGGCCTCC	.	8	8	0	0	G|0.531;A|0.469	0	0	0	0	0	A	77662248	G	A	77662248	2	1	16	1	0	0	0	0	0	0	0	1	14330	1103	39	1		1	SHROOM3	4	77662248	Silent	SNP	G	TCGA-OR-A5JK-01A-11D-A29I-10	2180182	77662248	113492028	25	3187										
TKTL2	84076	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	164394479	164394479	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0776699029126214	8	0.467760285596346	1.77087378640777	3.80461165048544	0.936519790888723	0.637186343068696	1	0	aggtacttgccagtataagcCattccacatgcagtacctaa	7	11	0	0	novel		TCGA-OR-A5JK-01A-11D-A29I-10	TCGA-OR-A5JK-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	30ef35e3-dbfe-4e8d-a398-fa59ec891031	9f7d2d3c-956c-4894-ba05-6349fc18bec2	.	TKTL2-95	NM_032136	exon1	c.G408A	p.M136I	ATAAGCCATTCCA	.	155	56	109	2	.	0	0	0	0	0	T	164394479	C	T	164394479	3	4	16	1	0	0	0	0	1	0	0	0	15973	594	21	3	1476	3	TKTL2	4	164394479	Missense_Mutation	SNP	C	TCGA-OR-A5JK-01A-11D-A29I-10	86732231	164394479	26759797	26	3188										
TRIP13	9319	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	912038	912038	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0776699029126214	8	0.467760285596346	1.77087378640777	3.80461165048544	0.936519790888723	0.637186343068696	1	0	cgtggacagggctgacatcaAgcagtacattgggccaccct	12	12	1	1	novel		TCGA-OR-A5JK-01A-11D-A29I-10	TCGA-OR-A5JK-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	30ef35e3-dbfe-4e8d-a398-fa59ec891031	9f7d2d3c-956c-4894-ba05-6349fc18bec2	.	TRIP13-90	NM_004237	exon10	c.A947G	p.K316R	ACATCAAGCAGTA	.	210	70	143	0	.	2	2	0	0	0	G	912038	A	G	912038	3	3	16	1	0	0	0	0	1	0	0	0	16595	72	3	4	989	4	TRIP13	5	912038	Missense_Mutation	SNP	A	TCGA-OR-A5JK-01A-11D-A29I-10		912038	180003222	27	3189										
PAPD7	11044	bcgsc.ca	37	chr5	6746484	6746484	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0776699029126214	8	0.467760285596346	1.77087378640777	3.80461165048544	0.936519790888723	0.637186343068696	1	0	caaagaggagatcatgaaagCcatgaccagcgggtacagac	12	9	1	5	novel		TCGA-OR-A5JK-01A-11D-A29I-10	TCGA-OR-A5JK-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	30ef35e3-dbfe-4e8d-a398-fa59ec891031	9f7d2d3c-956c-4894-ba05-6349fc18bec2	.	PAPD7-69	NM_001171805	exon7	c.C653A	p.A218D	TGAAAGCCATGAC	.	53	4	51	0	.	0	0	0	0	0	A	6746484	C	A	6746484	3	1	16	1	0	0	0	0	1	0	0	0	11455	739	26	3	675	3	PAPD7	5	6746484	Missense_Mutation	SNP	C	TCGA-OR-A5JK-01A-11D-A29I-10	5834446	6746484	174168776	28	3190										
NLN	57486	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	65105961	65105961	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0776699029126214	8	0.467760285596346	1.77087378640777	3.80461165048544	0.936519790888723	0.637186343068696	1	0	agtgaatatgccaaatactgCtcagaaatattaggagttgc	9	6	1	2	novel		TCGA-OR-A5JK-01A-11D-A29I-10	TCGA-OR-A5JK-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	30ef35e3-dbfe-4e8d-a398-fa59ec891031	9f7d2d3c-956c-4894-ba05-6349fc18bec2	.	NLN-90	NM_020726	exon11	c.C1812G	p.C604W	ATACTGCTCAGAA	.	109	18	85	0	.	0	0	0	0	0	G	65105961	C	G	65105961	3	3	16	1	0	0	0	0	1	0	0	0	10496	805	28	3	1854	3	NLN	5	65105961	Missense_Mutation	SNP	C	TCGA-OR-A5JK-01A-11D-A29I-10	58359477	65105961	115809299	29	3191										
RAD17	5884	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	68684968	68684968	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0776699029126214	8	0.467760285596346	1.77087378640777	3.80461165048544	0.936519790888723	0.637186343068696	1	0	agcctccagttttcttcttcAaaaggtaactatggaagata	7	8	3	1	rs140360093		TCGA-OR-A5JK-01A-11D-A29I-10	TCGA-OR-A5JK-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	30ef35e3-dbfe-4e8d-a398-fa59ec891031	9f7d2d3c-956c-4894-ba05-6349fc18bec2	.	RAD17-205	NM_133339	exon9	c.A1035T	p.S345S	TTCTTCAAAAGGT	.	49	8	48	0	A|1.000;T|0.000	0	0	0	0	0	T	68684968	A	T	68684968	2	4	16	1	0	0	0	0	0	0	0	1	13014	117	5	5		5	RAD17	5	68684968	Silent	SNP	A	TCGA-OR-A5JK-01A-11D-A29I-10	3579007	68684968	112230292	30	3192										
CMYA5	202333	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	79029380	79029380	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0776699029126214	8	0.467760285596346	1.77087378640777	3.80461165048544	0.936519790888723	0.637186343068696	1	0	agaacaaaccggcagtggagGtatcttctacagctcaggga	12	9	3	1	novel		TCGA-OR-A5JK-01A-11D-A29I-10	TCGA-OR-A5JK-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	30ef35e3-dbfe-4e8d-a398-fa59ec891031	9f7d2d3c-956c-4894-ba05-6349fc18bec2	.	CMYA5-77	NM_153610	exon2	c.G4792A	p.V1598I	GTGGAGGTATCTT	.	140	37	78	0	.	0	0	0	0	0	A	79029380	G	A	79029380	3	1	16	1	0	0	0	0	1	0	0	0	3596	1261	44	3	4798	3	CMYA5	5	79029380	Missense_Mutation	SNP	G	TCGA-OR-A5JK-01A-11D-A29I-10	10344412	79029380	101885880	31	3193										
PCDHB7	56129	broad.mit.edu	37	chr5	140553994	140553994	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0776699029126214	8	0.467760285596346	1.77087378640777	3.80461165048544	0.936519790888723	0.637186343068696	1	0	gactacgaggccctgcaggcGttcgagttccgcgtgggcgc	16	13	0	0	novel		TCGA-OR-A5JK-01A-11D-A29I-10	TCGA-OR-A5JK-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	30ef35e3-dbfe-4e8d-a398-fa59ec891031	9f7d2d3c-956c-4894-ba05-6349fc18bec2	.	PCDHB7-95	NM_018940	exon1	c.G1578T	p.A526A	GCAGGCGTTCGAG	.	381	17	162	1	.	9	9	0	0	0	T	140553994	G	T	140553994	2	4	16	1	0	0	0	0	0	0	0	1	11576	1132	40	2		2	PCDHB7	5	140553994	Silent	SNP	G	TCGA-OR-A5JK-01A-11D-A29I-10	61524614	140553994	40361266	32	3194										
ARL10	285598	hgsc.bcm.edu	37	chr5	175792605	175792605	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0776699029126214	8	0.467760285596346	1.77087378640777	3.80461165048544	0.936519790888723	0.637186343068696	1	0	ggccccttggtgctggcgctGggcggcgccgcggcggtgct	20	14	0	0	rs2303667		TCGA-OR-A5JK-01A-11D-A29I-10	TCGA-OR-A5JK-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	30ef35e3-dbfe-4e8d-a398-fa59ec891031	9f7d2d3c-956c-4894-ba05-6349fc18bec2	.	ARL10-91	NM_173664	exon1	c.G39C	p.L13L	GGCGCTGGGCGGC	.	13	13	0	0	G|0.585;C|0.415	0	0	0	0	0	C	175792605	G	C	175792605	2	2	16	1	0	0	0	0	0	0	0	1	926	1335	47	3		3	ARL10	5	175792605	Silent	SNP	G	TCGA-OR-A5JK-01A-11D-A29I-10	35238611	175792605	5122655	33	3195										
SLC35B3	51000	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	8417697	8417697	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0776699029126214	8	0.467760285596346	1.77087378640777	3.80461165048544	0.936519790888723	0.637186343068696	1	0	tgtcaatcccagtaaaatgtAtacaaaaccaattgaatacg	5	8	1	1	novel		TCGA-OR-A5JK-01A-11D-A29I-10	TCGA-OR-A5JK-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	30ef35e3-dbfe-4e8d-a398-fa59ec891031	9f7d2d3c-956c-4894-ba05-6349fc18bec2	.	SLC35B3-90	NM_001142540	exon8	c.T811C	p.Y271H	AAATGTATACAAA	.	162	87	151	0	.	5	0	5	0	0	G	8417697	A	G	8417697	3	3	16	1	0	0	0	0	1	0	0	0	14612	449	16	4	410	4	SLC35B3	6	8417697	Missense_Mutation	SNP	A	TCGA-OR-A5JK-01A-11D-A29I-10		8417697	162697370	34	3196										
MLN	4295	bcgsc.ca	37	chr6	33768897	33768897	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0776699029126214	8	0.467760285596346	1.77087378640777	3.80461165048544	0.936519790888723	0.637186343068696	1	0	gggaggccagcatggcagctAcatgcaccaccagcagagca	13	13	0	1	rs2281820	byfrequency	TCGA-OR-A5JK-01A-11D-A29I-10	TCGA-OR-A5JK-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	30ef35e3-dbfe-4e8d-a398-fa59ec891031	9f7d2d3c-956c-4894-ba05-6349fc18bec2	.	MLN-90	NM_002418	exon2	c.T44C	p.V15A	GCAGCTACATGCA	.	213	9	313	5	A|0.403;G|0.597	0	0	0	0	0	G	33768897	A	G	33768897	3	3	16	1	0	0	0	0	1	0	0	0	9659	391	14	4	319	4	MLN	6	33768897	Missense_Mutation	SNP	A	TCGA-OR-A5JK-01A-11D-A29I-10	25351200	33768897	137346170	35	3197										
KCNQ5	56479	hgsc.bcm.edu	37	chr6	73332040	73332040	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0776699029126214	8	0.467760285596346	1.77087378640777	3.80461165048544	0.936519790888723	0.637186343068696	1	0	ggcatgaaggatgtggagtcCggccggggcagggtgctgct	20	8	0	1	rs3734212	byfrequency	TCGA-OR-A5JK-01A-11D-A29I-10	TCGA-OR-A5JK-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	30ef35e3-dbfe-4e8d-a398-fa59ec891031	9f7d2d3c-956c-4894-ba05-6349fc18bec2	.	KCNQ5-158	NM_001160132	exon1	c.C123G	p.S41S	GGAGTCCGGCCGG	.	5	5	0	0	C|0.505;G|0.495	0	0	0	0	0	G	73332040	C	G	73332040	2	3	16	1	0	0	0	0	0	0	0	1	8107	639	23	2		2	KCNQ5	6	73332040	Silent	SNP	C	TCGA-OR-A5JK-01A-11D-A29I-10	39563143	73332040	97783027	36	3198										
RPS6KA2	6196	ucsc.edu	37	chr6	166826304	166826304	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0776699029126214	8	0.467760285596346	1.77087378640777	3.80461165048544	0.936519790888723	0.637186343068696	1	0	ctgcgctgagccaggttggaTgacagcacgggctccagccg	15	13	0	2	rs760670	byfrequency	TCGA-OR-A5JK-01A-11D-A29I-10	TCGA-OR-A5JK-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	30ef35e3-dbfe-4e8d-a398-fa59ec891031	9f7d2d3c-956c-4894-ba05-6349fc18bec2	.	RPS6KA2-1405	NM_001006932	exon22	c.A2172G	p.S724S	GTTGGATGACAGC	.	44	4	67	2	T|0.240;C|0.760	1	1	0	0	0	C	166826304	T	C	166826304	2	2	16	1	0	0	0	0	0	0	0	1	13686	1451	51	4		4	RPS6KA2	6	166826304	Silent	SNP	T	TCGA-OR-A5JK-01A-11D-A29I-10	93494264	166826304	4288763	37	3199										
USP42	84132	hgsc.bcm.edu	37	chr7	6193521	6193521	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0776699029126214	8	0.467760285596346	1.77087378640777	3.80461165048544	0.936519790888723	0.637186343068696	1	0	caagaaggctccgccgccccGcgatcccggcacccccgcta	10	21	0	1	rs61729726	byfrequency	TCGA-OR-A5JK-01A-11D-A29I-10	TCGA-OR-A5JK-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	30ef35e3-dbfe-4e8d-a398-fa59ec891031	9f7d2d3c-956c-4894-ba05-6349fc18bec2	.	USP42-659	NM_032172	exon15	c.G2336C	p.R779P	CGCCCCGCGATCC	.	20	7	2	0	G|0.456;C|0.544	0	0	0	0	0	C	6193521	G	C	6193521	3	2	16	1	0	0	0	0	1	0	0	0	17111	1087	38	2		2	USP42	7	6193521	Missense_Mutation	SNP	G	TCGA-OR-A5JK-01A-11D-A29I-10		6193521	152945142	38	3200										
GLI3	2737	hgsc.bcm.edu	37	chr7	42005678	42005678	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0776699029126214	8	0.467760285596346	1.77087378640777	3.80461165048544	0.936519790888723	0.637186343068696	1	0	ccctcctcacgccgtggcccGgcgcatcgtgcggctgcagg	14	18	1	0	rs929387	byfrequency	TCGA-OR-A5JK-01A-11D-A29I-10	TCGA-OR-A5JK-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	30ef35e3-dbfe-4e8d-a398-fa59ec891031	9f7d2d3c-956c-4894-ba05-6349fc18bec2	.	GLI3-1149	NM_000168	exon15	c.C2993T	p.P998L	TGGCCCGGCGCAT	.	11	11	0	0	G|0.565;A|0.435	0	0	0	0	0	A	42005678	G	A	42005678	3	1	16	1	0	0	0	0	1	0	0	0	6459	1116	39	1	1753	1	GLI3	7	42005678	Missense_Mutation	SNP	G	TCGA-OR-A5JK-01A-11D-A29I-10	35812157	42005678	117132985	39	3201										
LAMB4	22798	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr7	107677982	107677982	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0776699029126214	8	0.467760285596346	1.77087378640777	3.80461165048544	0.936519790888723	0.637186343068696	1	0	ttttgggatggaattggtagGtgaatgtcaagcacaccatt	12	5	1	1	novel		TCGA-OR-A5JK-01A-11D-A29I-10	TCGA-OR-A5JK-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	30ef35e3-dbfe-4e8d-a398-fa59ec891031	9f7d2d3c-956c-4894-ba05-6349fc18bec2	.	LAMB4-140	NM_007356	exon30	c.C4530G	p.H1510Q	TGGTAGGTGAATG	.	226	19	211	0	.	0	0	0	0	0	C	107677982	G	C	107677982	3	2	16	1	0	0	0	0	1	0	0	0	8635	1252	44	3	775	3	LAMB4	7	107677982	Missense_Mutation	SNP	G	TCGA-OR-A5JK-01A-11D-A29I-10	65672304	107677982	51460681	40	3202										
CLDN23	137075	hgsc.bcm.edu	37	chr8	8560536	8560536	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0776699029126214	8	0.467760285596346	1.77087378640777	3.80461165048544	0.936519790888723	0.637186343068696	1	0	gcagcgtcagcaccatccaaGtggagtggcccgagcccgac	13	15	1	0	rs12548737	byfrequency	TCGA-OR-A5JK-01A-11D-A29I-10	TCGA-OR-A5JK-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	30ef35e3-dbfe-4e8d-a398-fa59ec891031	9f7d2d3c-956c-4894-ba05-6349fc18bec2	.	.	NM_194284	exon1	c.G628A	p.V210M	ATCCAAGTGGAGT	.	15	6	6	0	G|0.907;A|0.093	0	0	0	0	0	A	8560536	G	A	8560536	3	1	16	1	0	0	0	0	1	0	0	0	3490	1029	36	3	630	3	CLDN23	8	8560536	Missense_Mutation	SNP	G	TCGA-OR-A5JK-01A-11D-A29I-10		8560536	137803486	41	3203										
KIAA1967	57805	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr8	22475230	22475230	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0776699029126214	8	0.467760285596346	1.77087378640777	3.80461165048544	0.936519790888723	0.637186343068696	1	0	aggagcaaagctggaggattCggaggtccggtccgttgcct	16	9	0	0	novel		TCGA-OR-A5JK-01A-11D-A29I-10	TCGA-OR-A5JK-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	30ef35e3-dbfe-4e8d-a398-fa59ec891031	9f7d2d3c-956c-4894-ba05-6349fc18bec2	.	KIAA1967-92	NM_021174	exon16	c.C2012T	p.S671L	AGGATTCGGAGGT	.	181	66	173	0	.	55	32	23	0	0	T	22475230	C	T	22475230	3	4	16	1	0	0	0	0	1	0	0	0	8286	893	31	1	2070	1	KIAA1967	8	22475230	Missense_Mutation	SNP	C	TCGA-OR-A5JK-01A-11D-A29I-10	13914694	22475230	123888792	42	3204										
STMN2	11075	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	80553660	80553660	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0776699029126214	8	0.467760285596346	1.77087378640777	3.80461165048544	0.936519790888723	0.637186343068696	1	0	gtgcctctggccaggcttttGagctgatcttgaagccacca	11	12	2	3	novel		TCGA-OR-A5JK-01A-11D-A29I-10	TCGA-OR-A5JK-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	30ef35e3-dbfe-4e8d-a398-fa59ec891031	9f7d2d3c-956c-4894-ba05-6349fc18bec2	.	STMN2-515	NM_007029	exon3	c.G163C	p.E55Q	GCTTTTGAGCTGA	.	90	10	59	0	.	0	0	0	0	0	C	80553660	G	C	80553660	3	2	16	1	0	0	0	0	1	0	0	0	15346	1291	45	3	173	3	STMN2	8	80553660	Missense_Mutation	SNP	G	TCGA-OR-A5JK-01A-11D-A29I-10	58078430	80553660	65810362	43	3205										
E2F5	1875	hgsc.bcm.edu	37	chr8	86089787	86089787	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0776699029126214	8	0.467760285596346	1.77087378640777	3.80461165048544	0.936519790888723	0.637186343068696	1	0	ccgccgcagctcgggggcgcCgggggcggcagcagcaggca	20	15	0	0	rs12926	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-OR-A5JK-01A-11D-A29I-10	TCGA-OR-A5JK-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	30ef35e3-dbfe-4e8d-a398-fa59ec891031	9f7d2d3c-956c-4894-ba05-6349fc18bec2	.	E2F5-415	NM_001083588	exon1	c.C132G	p.A44A	GGGCGCCGGGGGC	.	6	6	0	0	C|0.434;G|0.566	0	0	0	0	0	G	86089787	C	G	86089787	2	3	16	1	0	0	0	0	0	0	0	1	4881	639	23	2		2	E2F5	8	86089787	Silent	SNP	C	TCGA-OR-A5JK-01A-11D-A29I-10	5536127	86089787	60274235	44	3206										
TMEM74	157753	broad.mit.edu;bcgsc.ca	37	chr8	109796433	109796433	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0776699029126214	8	0.467760285596346	1.77087378640777	3.80461165048544	0.936519790888723	0.637186343068696	1	0	actctgtacagcaagcgcatCttcctctaccaaggacagtt	7	13	3	0	novel		TCGA-OR-A5JK-01A-11D-A29I-10	TCGA-OR-A5JK-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	30ef35e3-dbfe-4e8d-a398-fa59ec891031	9f7d2d3c-956c-4894-ba05-6349fc18bec2	.	TMEM74-228	NM_153015	exon2	c.G895C	p.D299H	GCGCATCTTCCTC	.	178	7	176	0	.	0	0	0	0	0	G	109796433	C	G	109796433	3	3	16	1	0	0	0	0	1	0	0	0	16239	913	32	3	26	3	TMEM74	8	109796433	Missense_Mutation	SNP	C	TCGA-OR-A5JK-01A-11D-A29I-10	23706646	109796433	36567589	45	3207										
GLI4	2738	hgsc.bcm.edu	37	chr8	144358302	144358302	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0776699029126214	8	0.467760285596346	1.77087378640777	3.80461165048544	0.936519790888723	0.637186343068696	1	0	ctcgtgcagcaagcagcggcCgggcccgagggtgcgcccga	17	15	0	0	rs1056146		TCGA-OR-A5JK-01A-11D-A29I-10	TCGA-OR-A5JK-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	30ef35e3-dbfe-4e8d-a398-fa59ec891031	9f7d2d3c-956c-4894-ba05-6349fc18bec2	.	GLI4-91	NM_138465	exon4	c.C459T	p.A153A	AGCGGCCGGGCCC	.	15	7	0	0	C|0.723;T|0.277	1	0	1	0	0	T	144358302	C	T	144358302	2	4	16	1	0	0	0	0	0	0	0	1	6460	639	23	1		1	GLI4	8	144358302	Silent	SNP	C	TCGA-OR-A5JK-01A-11D-A29I-10	34561869	144358302	2005720	46	3208										
SCRIB	23513	hgsc.bcm.edu	37	chr8	144874477	144874477	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0776699029126214	8	0.467760285596346	1.77087378640777	3.80461165048544	0.936519790888723	0.637186343068696	1	0	gctcgggtgccggtggctccGgactctgcacgcgcagccgc	16	16	1	0	novel		TCGA-OR-A5JK-01A-11D-A29I-10	TCGA-OR-A5JK-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	30ef35e3-dbfe-4e8d-a398-fa59ec891031	9f7d2d3c-956c-4894-ba05-6349fc18bec2	.	SCRIB-228	NM_015356	exon32	c.C4427T	p.P1476L	GGCTCCGGACTCT	.	16	6	0	0	.	32	18	14	0	0	A	144874477	G	A	144874477	3	1	16	1	0	0	0	0	1	0	0	0	13972	1116	39	1	564	1	SCRIB	8	144874477	Missense_Mutation	SNP	G	TCGA-OR-A5JK-01A-11D-A29I-10	516175	144874477	1489545	47	3209										
PLEC	5339	hgsc.bcm.edu	37	chr8	144998169	144998169	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0776699029126214	8	0.467760285596346	1.77087378640777	3.80461165048544	0.936519790888723	0.637186343068696	1	0	cgccgccgctcctcctccgcCgccagctgccgctgcctcgc	10	24	0	0	rs1140522	byfrequency	TCGA-OR-A5JK-01A-11D-A29I-10	TCGA-OR-A5JK-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	30ef35e3-dbfe-4e8d-a398-fa59ec891031	9f7d2d3c-956c-4894-ba05-6349fc18bec2	.	PLEC-141	NM_201380	exon31	c.G6339A	p.A2113A	CTCCGCCGCCAGC	.	22	22	0	0	C|0.740;T|0.260	6	0	6	0	0	T	144998169	C	T	144998169	2	4	16	1	0	0	0	0	0	0	0	1	12081	639	23	1		1	PLEC	8	144998169	Silent	SNP	C	TCGA-OR-A5JK-01A-11D-A29I-10	123692	144998169	1365853	48	3210										
PLEC	5339	hgsc.bcm.edu	37	chr8	145001588	145001588	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0776699029126214	8	0.467760285596346	1.77087378640777	3.80461165048544	0.936519790888723	0.637186343068696	1	0	ccaagcccacctgctcctgcCgcagctgctcccgcacagcc	8	22	0	0	rs11136334	byfrequency	TCGA-OR-A5JK-01A-11D-A29I-10	TCGA-OR-A5JK-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	30ef35e3-dbfe-4e8d-a398-fa59ec891031	9f7d2d3c-956c-4894-ba05-6349fc18bec2	.	PLEC-141	NM_201380	exon27	c.G4157A	p.R1386Q	TCCTGCCGCAGCT	.	33	33	0	0	C|0.707;T|0.293	0	0	0	0	0	T	145001588	C	T	145001588	3	4	16	1	0	0	0	0	1	0	0	0	12081	652	23	1	9921	1	PLEC	8	145001588	Missense_Mutation	SNP	C	TCGA-OR-A5JK-01A-11D-A29I-10	3419	145001588	1362434	49	3211										
BNC2	54796	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr9	16418993	16418993	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0776699029126214	8	0.467760285596346	1.77087378640777	3.80461165048544	0.936519790888723	0.637186343068696	1	0	tgtccattctgagactaatcTactgaagtgaagggaatgtt	10	6	2	3	novel		TCGA-OR-A5JK-01A-11D-A29I-10	TCGA-OR-A5JK-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	30ef35e3-dbfe-4e8d-a398-fa59ec891031	9f7d2d3c-956c-4894-ba05-6349fc18bec2	.	BNC2-92	NM_017637	exon7	c.A3294T	p.V1098V	CTAATCTACTGAA	.	115	72	174	0	.	0	0	0	0	0	A	16418993	T	A	16418993	2	1	16	1	0	0	0	0	0	0	0	1	1476	1509	53	5		5	BNC2	9	16418993	Silent	SNP	T	TCGA-OR-A5JK-01A-11D-A29I-10		16418993	124794438	50	3212										
KIAA0368	23392	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr9	114128569	114128569	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0776699029126214	8	0.467760285596346	1.77087378640777	3.80461165048544	0.936519790888723	0.637186343068696	1	0	caagcagaatttcagccaaaGcctcaggatcggcatgttct	9	11	3	1	novel		TCGA-OR-A5JK-01A-11D-A29I-10	TCGA-OR-A5JK-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	30ef35e3-dbfe-4e8d-a398-fa59ec891031	9f7d2d3c-956c-4894-ba05-6349fc18bec2	.	KIAA0368-68	NM_001080398	exon49	c.C5792A	p.A1931D	GCCAAAGCCTCAG	.	105	60	136	0	.	70	20	50	0	0	T	114128569	G	T	114128569	3	4	16	1	0	0	0	0	1	0	0	0	8192	971	34	3	273	3	KIAA0368	9	114128569	Missense_Mutation	SNP	G	TCGA-OR-A5JK-01A-11D-A29I-10	97709576	114128569	27084862	51	3213										
WDR34	89891	hgsc.bcm.edu	37	chr9	131418828	131418828	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0776699029126214	8	0.467760285596346	1.77087378640777	3.80461165048544	0.936519790888723	0.637186343068696	1	0	ccgcgccctcaccgtctcccAgcggatgccctggacggccc	11	21	2	0	rs4837292		TCGA-OR-A5JK-01A-11D-A29I-10	TCGA-OR-A5JK-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	30ef35e3-dbfe-4e8d-a398-fa59ec891031	9f7d2d3c-956c-4894-ba05-6349fc18bec2	.	WDR34-92	NM_052844	exon1	c.T178G	p.W60G	TCTCCCAGCGGAT	.	5	5	0	0	A|0.006;C|0.994	0	0	0	0	0	C	131418828	A	C	131418828	3	2	16	1	0	0	0	0	1	0	0	0	17326	188	7	5	1468	5	WDR34	9	131418828	Missense_Mutation	SNP	A	TCGA-OR-A5JK-01A-11D-A29I-10	17290259	131418828	9794603	52	3214										
ANKRD16	54522	hgsc.bcm.edu	37	chr10	5931230	5931230	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0776699029126214	8	0.467760285596346	1.77087378640777	3.80461165048544	0.936519790888723	0.637186343068696	1	0	ggccggccccgggcagccccCggccgcctgcagctcctcct	13	22	0	0	rs3750659	byfrequency	TCGA-OR-A5JK-01A-11D-A29I-10	TCGA-OR-A5JK-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	30ef35e3-dbfe-4e8d-a398-fa59ec891031	9f7d2d3c-956c-4894-ba05-6349fc18bec2	.	ANKRD16-90	NM_001009943	exon1	c.G88A	p.G30R	AGCCCCCGGCCGC	.	10	8	1	0	C|0.938;T|0.062	0	0	0	0	0	T	5931230	C	T	5931230	3	4	16	1	0	0	0	0	1	0	0	0	645	652	23	1	1025	1	ANKRD16	10	5931230	Missense_Mutation	SNP	C	TCGA-OR-A5JK-01A-11D-A29I-10		5931230	129603517	53	3215										
RPP38	10557	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr10	15145497	15145497	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0776699029126214	8	0.467760285596346	1.77087378640777	3.80461165048544	0.936519790888723	0.637186343068696	1	0	ttggacttcagaagattgaaGataagaagaaaaagaacaaa	9	3	1	7	novel		TCGA-OR-A5JK-01A-11D-A29I-10	TCGA-OR-A5JK-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	30ef35e3-dbfe-4e8d-a398-fa59ec891031	9f7d2d3c-956c-4894-ba05-6349fc18bec2	.	RPP38-91	NM_001265601	exon2	c.G184T	p.D62Y	ATTGAAGATAAGA	.	112	39	85	0	.	11	8	3	0	0	T	15145497	G	T	15145497	3	4	16	1	0	0	0	0	1	0	0	0	13648	942	33	3	186	3	RPP38	10	15145497	Missense_Mutation	SNP	G	TCGA-OR-A5JK-01A-11D-A29I-10	9214267	15145497	120389250	54	3216										
DDX50	79009	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr10	70672928	70672928	+	Nonsense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0776699029126214	8	0.467760285596346	1.77087378640777	3.80461165048544	0.936519790888723	0.637186343068696	1	0	tcttgctcaggtacttgtttTggctccaacaagggaactgg	11	9	2	0	novel		TCGA-OR-A5JK-01A-11D-A29I-10	TCGA-OR-A5JK-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	30ef35e3-dbfe-4e8d-a398-fa59ec891031	9f7d2d3c-956c-4894-ba05-6349fc18bec2	.	DDX50-91	NM_024045	exon5	c.T650A	p.L217X	TTGTTTTGGCTCC	.	175	9	134	0	.	0	0	0	0	0	A	70672928	T	A	70672928	4	1	16	1	0	0	0	0	0	1	0	0	4374	1821	63	5	668	5	DDX50	10	70672928	Nonsense_Mutation	SNP	T	TCGA-OR-A5JK-01A-11D-A29I-10	55527431	70672928	64861819	55	3217										
CNNM1	26507	broad.mit.edu	37	chr10	101124187	101124187	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0776699029126214	8	0.467760285596346	1.77087378640777	3.80461165048544	0.936519790888723	0.637186343068696	1	0	tttccagggtaaagtggaggTggaggttggtaaggaaggcc	18	4	0	0	novel		TCGA-OR-A5JK-01A-11D-A29I-10	TCGA-OR-A5JK-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	30ef35e3-dbfe-4e8d-a398-fa59ec891031	9f7d2d3c-956c-4894-ba05-6349fc18bec2	.	CNNM1-68	NM_020348	exon5	c.T2042G	p.V681G	TGGAGGTGGAGGT	.	41	13	35	7	.	0	0	0	0	0	G	101124187	T	G	101124187	3	3	16	1	0	0	0	0	1	0	0	0	3618	1696	59	5	2060	5	CNNM1	10	101124187	Missense_Mutation	SNP	T	TCGA-OR-A5JK-01A-11D-A29I-10	30451259	101124187	34410560	56	3218										
PDZD7	79955	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	chr10	102775566	102775566	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0776699029126214	8	0.467760285596346	1.77087378640777	3.80461165048544	0.936519790888723	0.637186343068696	1	0	cagggcccggcccctctcctGgtctgcagggcaggaaccat	13	16	2	0	novel		TCGA-OR-A5JK-01A-11D-A29I-10	TCGA-OR-A5JK-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	30ef35e3-dbfe-4e8d-a398-fa59ec891031	9f7d2d3c-956c-4894-ba05-6349fc18bec2	.	PDZD7-136	NM_001195263	exon11	c.C1576T	p.Q526X	TCTCCTGGTCTGC	.	146	58	159	0	.	0	0	0	0	0	A	102775566	G	A	102775566	4	1	16	1	0	0	0	0	0	1	0	0	11733	1363	47	3		3	PDZD7	10	102775566	Nonsense_Mutation	SNP	G	TCGA-OR-A5JK-01A-11D-A29I-10	1651379	102775566	32759181	57	3219										
EPS8L2	64787	broad.mit.edu	37	chr11	726471	726471	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0776699029126214	8	0.467760285596346	1.77087378640777	3.80461165048544	0.936519790888723	0.637186343068696	1	0	gcgcctggctggaagccaagGccttcagcccgcggtgagcg	16	14	1	1	novel		TCGA-OR-A5JK-01A-11D-A29I-10	TCGA-OR-A5JK-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	30ef35e3-dbfe-4e8d-a398-fa59ec891031	9f7d2d3c-956c-4894-ba05-6349fc18bec2	.	EPS8L2-91	NM_022772	exon19	c.G1921T	p.A641S	GCCAAGGCCTTCA	.	44	8	54	2	.	0	0	0	0	0	T	726471	G	T	726471	3	4	16	1	0	0	0	0	1	0	0	0	5209	1203	42	3	1991	3	EPS8L2	11	726471	Missense_Mutation	SNP	G	TCGA-OR-A5JK-01A-11D-A29I-10		726471	134280045	58	3220										
MUC6	4588	bcgsc.ca	37	chr11	1017249	1017249	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0776699029126214	8	0.467760285596346	1.77087378640777	3.80461165048544	0.936519790888723	0.637186343068696	1	0	ggatgatgaccgtgtgagtaCttggagtcaccaaggaggtg	16	6	1	3	novel		TCGA-OR-A5JK-01A-11D-A29I-10	TCGA-OR-A5JK-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	30ef35e3-dbfe-4e8d-a398-fa59ec891031	9f7d2d3c-956c-4894-ba05-6349fc18bec2	.	MUC6-23	NM_005961	exon31	c.G5552A	p.S1851N	TGAGTACTTGGAG	.	929	52	1494	36	.	0	0	0	0	0	T	1017249	C	T	1017249	3	4	16	1	0	0	0	0	1	0	0	0	10008	565	20	3	1779	3	MUC6	11	1017249	Missense_Mutation	SNP	C	TCGA-OR-A5JK-01A-11D-A29I-10	290778	1017249	133989267	59	3221										
OR52B6	340980	bcgsc.ca	37	chr11	5602438	5602438	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0776699029126214	8	0.467760285596346	1.77087378640777	3.80461165048544	0.936519790888723	0.637186343068696	1	0	tttgtggctaggttatagccTcatttcctttgatggctgcc	10	9	1	1	rs2341432	byfrequency	TCGA-OR-A5JK-01A-11D-A29I-10	TCGA-OR-A5JK-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	30ef35e3-dbfe-4e8d-a398-fa59ec891031	9f7d2d3c-956c-4894-ba05-6349fc18bec2	.	OR52B6-69	NM_001005162	exon1	c.T332A	p.L111H	ATAGCCTCATTTC	.	162	7	225	0	T|0.358;A|0.642	0	0	0	0	0	A	5602438	T	A	5602438	3	1	16	1	0	0	0	0	1	0	0	0	11142	1551	54	5	334	5	OR52B6	11	5602438	Missense_Mutation	SNP	T	TCGA-OR-A5JK-01A-11D-A29I-10	4585189	5602438	129404078	60	3222										
PCNXL3	399909	bcgsc.ca	37	chr11	65387378	65387378	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0776699029126214	8	0.467760285596346	1.77087378640777	3.80461165048544	0.936519790888723	0.637186343068696	1	0	gatgacacttctgagggtgcTgtgcactatttctacgatga	11	8	2	3	rs61744384	byfrequency	TCGA-OR-A5JK-01A-11D-A29I-10	TCGA-OR-A5JK-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	30ef35e3-dbfe-4e8d-a398-fa59ec891031	9f7d2d3c-956c-4894-ba05-6349fc18bec2	.	PCNXL3-46	NM_032223	exon8	c.T1983A	p.A661A	GGGTGCTGTGCAC	.	76	4	116	1	T|0.604;A|0.396	0	0	0	0	0	A	65387378	T	A	65387378	2	1	16	1	0	0	0	0	0	0	0	1	11622	1567	55	5		5	PCNXL3	11	65387378	Silent	SNP	T	TCGA-OR-A5JK-01A-11D-A29I-10	59784940	65387378	69619138	61	3223										
GAL3ST3	89792	hgsc.bcm.edu	37	chr11	65810209	65810209	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0776699029126214	8	0.467760285596346	1.77087378640777	3.80461165048544	0.936519790888723	0.637186343068696	1	0	accttgcggctgggctgccaCggctgcagctgcttggtgcg	16	13	0	0	rs61895584	byfrequency	TCGA-OR-A5JK-01A-11D-A29I-10	TCGA-OR-A5JK-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	30ef35e3-dbfe-4e8d-a398-fa59ec891031	9f7d2d3c-956c-4894-ba05-6349fc18bec2	.	GAL3ST3-91	NM_033036	exon3	c.G1065A	p.P355P	CTGCCACGGCTGC	.	5	4	0	0	C|0.233;T|0.767	0	0	0	0	0	T	65810209	C	T	65810209	2	4	16	1	0	0	0	0	0	0	0	1	6219	523	19	1		1	GAL3ST3	11	65810209	Silent	SNP	C	TCGA-OR-A5JK-01A-11D-A29I-10	422831	65810209	69196307	62	3224										
LARP4	113251	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	50822742	50822742	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0776699029126214	8	0.467760285596346	1.77087378640777	3.80461165048544	0.936519790888723	0.637186343068696	1	0	tgcagagctctcagaagataTatgtaaagaatatgaagtaa	9	4	1	5	novel		TCGA-OR-A5JK-01A-11D-A29I-10	TCGA-OR-A5JK-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	30ef35e3-dbfe-4e8d-a398-fa59ec891031	9f7d2d3c-956c-4894-ba05-6349fc18bec2	.	LARP4-91	NM_001170808	exon3	c.T191C	p.I64T	AAGATATATGTAA	.	35	14	38	0	.	1	0	1	0	0	C	50822742	T	C	50822742	3	2	16	1	0	0	0	0	1	0	0	0	8652	1406	49	4	201	4	LARP4	12	50822742	Missense_Mutation	SNP	T	TCGA-OR-A5JK-01A-11D-A29I-10		50822742	83029153	63	3225										
MARS	4141	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	57908595	57908595	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0776699029126214	8	0.467760285596346	1.77087378640777	3.80461165048544	0.936519790888723	0.637186343068696	1	0	cctgctggcccatgtcacccTggagctccagcactatcacc	8	18	2	0	novel		TCGA-OR-A5JK-01A-11D-A29I-10	TCGA-OR-A5JK-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	30ef35e3-dbfe-4e8d-a398-fa59ec891031	9f7d2d3c-956c-4894-ba05-6349fc18bec2	.	MARS-654	NM_004990	exon16	c.T2060G	p.L687R	TCACCCTGGAGCT	.	102	32	121	0	.	43	27	16	0	0	G	57908595	T	G	57908595	3	3	16	1	0	0	0	0	1	0	0	0	9344	1580	55	5	2122	5	MARS	12	57908595	Missense_Mutation	SNP	T	TCGA-OR-A5JK-01A-11D-A29I-10	7085853	57908595	75943300	64	3226										
NCOR2	9612	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	124904549	124904549	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0776699029126214	8	0.467760285596346	1.77087378640777	3.80461165048544	0.936519790888723	0.637186343068696	1	0	tccgtctcaccaggctcttaTagttctcattcttcttagtc	5	13	5	0	novel		TCGA-OR-A5JK-01A-11D-A29I-10	TCGA-OR-A5JK-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	30ef35e3-dbfe-4e8d-a398-fa59ec891031	9f7d2d3c-956c-4894-ba05-6349fc18bec2	.	NCOR2-229	NM_006312	exon15	c.A1436G	p.Y479C	CTCTTATAGTTCT	.	67	32	98	0	.	5	3	2	0	0	C	124904549	T	C	124904549	3	2	16	1	0	0	0	0	1	0	0	0	10265	1406	49	4	6272	4	NCOR2	12	124904549	Missense_Mutation	SNP	T	TCGA-OR-A5JK-01A-11D-A29I-10	66995954	124904549	8947346	65	3227										
POLE	5426	bcgsc.ca	37	chr12	133219831	133219831	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0776699029126214	8	0.467760285596346	1.77087378640777	3.80461165048544	0.936519790888723	0.637186343068696	1	0	gtgtccagcacaaagacggaTgccctgcgctgtgaggggat	15	10	0	2	rs5744944	byfrequency	TCGA-OR-A5JK-01A-11D-A29I-10	TCGA-OR-A5JK-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	30ef35e3-dbfe-4e8d-a398-fa59ec891031	9f7d2d3c-956c-4894-ba05-6349fc18bec2	.	POLE-233	NM_006231	exon35	c.A4530G	p.A1510A	GACGGATGCCCTG	.	112	7	118	1	T|0.448;C|0.552	2	2	0	0	0	C	133219831	T	C	133219831	2	2	16	1	0	0	0	0	0	0	0	1	12225	1451	51	4		4	POLE	12	133219831	Silent	SNP	T	TCGA-OR-A5JK-01A-11D-A29I-10	8315282	133219831	632064	66	3228										
OLFM4	10562	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr13	53603040	53603040	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0776699029126214	8	0.467760285596346	1.77087378640777	3.80461165048544	0.936519790888723	0.637186343068696	1	0	caagctgcaggggatttgggGgatgtgggacctccaattcc	15	9	0	0	novel		TCGA-OR-A5JK-01A-11D-A29I-10	TCGA-OR-A5JK-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	30ef35e3-dbfe-4e8d-a398-fa59ec891031	9f7d2d3c-956c-4894-ba05-6349fc18bec2	.	OLFM4-69	NM_006418	exon1	c.G69A	p.G23G	TTTGGGGGATGTG	.	42	31	57	0	.	0	0	0	0	0	A	53603040	G	A	53603040	2	1	16	1	0	0	0	0	0	0	0	1	10884	1219	43	3		3	OLFM4	13	53603040	Silent	SNP	G	TCGA-OR-A5JK-01A-11D-A29I-10		53603040	61566838	67	3229										
TMTC4	84899	bcgsc.ca	37	chr13	101287404	101287404	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0776699029126214	8	0.467760285596346	1.77087378640777	3.80461165048544	0.936519790888723	0.637186343068696	1	0	cggaagaacaggttactcgcGgggagaaatgggataacgag	16	6	0	2	rs2297943	byfrequency	TCGA-OR-A5JK-01A-11D-A29I-10	TCGA-OR-A5JK-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	30ef35e3-dbfe-4e8d-a398-fa59ec891031	9f7d2d3c-956c-4894-ba05-6349fc18bec2	.	TMTC4-155	NM_032813	exon11	c.C1248T	p.P416P	ACTCGCGGGGAGA	.	96	6	116	0	G|0.737;A|0.263	3	3	0	0	0	A	101287404	G	A	101287404	2	1	16	1	0	0	0	0	0	0	0	1	16300	1103	39	1		1	TMTC4	13	101287404	Silent	SNP	G	TCGA-OR-A5JK-01A-11D-A29I-10	47684364	101287404	13882474	68	3230										
OR4N2	390429	bcgsc.ca	37	chr14	20296519	20296519	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0776699029126214	8	0.467760285596346	1.77087378640777	3.80461165048544	0.936519790888723	0.637186343068696	1	0	atgaaaaaggtgtttaataaGcacatagcctgaaaaagggc	10	5	0	2	rs201350516		TCGA-OR-A5JK-01A-11D-A29I-10	TCGA-OR-A5JK-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	30ef35e3-dbfe-4e8d-a398-fa59ec891031	9f7d2d3c-956c-4894-ba05-6349fc18bec2	.	OR4N2-71	NM_001004723	exon1	c.G912A	p.K304K	TAATAAGCACATA	.	42	8	61	2	G|0.999;A|0.001	0	0	0	0	0	A	20296519	G	A	20296519	2	1	16	1	0	0	0	0	0	0	0	1	11106	962	34	3		3	OR4N2	14	20296519	Silent	SNP	G	TCGA-OR-A5JK-01A-11D-A29I-10		20296519	87053021	69	3231										
PLEKHH1	57475	bcgsc.ca	37	chr14	68041061	68041061	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0776699029126214	8	0.467760285596346	1.77087378640777	3.80461165048544	0.936519790888723	0.637186343068696	1	0	tgctgaaggtgcaggccaccGggcctccagctctgcttcgg	14	14	1	1	rs61534804	byfrequency	TCGA-OR-A5JK-01A-11D-A29I-10	TCGA-OR-A5JK-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	30ef35e3-dbfe-4e8d-a398-fa59ec891031	9f7d2d3c-956c-4894-ba05-6349fc18bec2	.	PLEKHH1-22	NM_020715	exon14	c.G2029A	p.G677R	GCCACCGGGCCTC	.	102	5	130	1	G|0.897;A|0.103	5	5	0	0	0	A	68041061	G	A	68041061	3	1	16	1	0	0	0	0	1	0	0	0	12105	1116	39	1	2079	1	PLEKHH1	14	68041061	Missense_Mutation	SNP	G	TCGA-OR-A5JK-01A-11D-A29I-10	47744542	68041061	39308479	70	3232										
CATSPERB	79820	hgsc.bcm.edu;bcgsc.ca	37	chr14	92126304	92126304	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0776699029126214	8	0.467760285596346	1.77087378640777	3.80461165048544	0.936519790888723	0.637186343068696	1	0	tattaattgaaaggtgttgcCgccatcaactgaaagccata	8	8	1	2	rs147058492	byfrequency	TCGA-OR-A5JK-01A-11D-A29I-10	TCGA-OR-A5JK-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	30ef35e3-dbfe-4e8d-a398-fa59ec891031	9f7d2d3c-956c-4894-ba05-6349fc18bec2	.	CATSPERB-138	NM_024764	exon15	c.G1309A	p.G437S	TGTTGCCGCCATC	.	55	4	81	0	C|0.999;T|0.001	0	0	0	0	0	T	92126304	C	T	92126304	3	4	16	1	0	0	0	0	1	0	0	0	2697	652	23	1	2093	1	CATSPERB	14	92126304	Missense_Mutation	SNP	C	TCGA-OR-A5JK-01A-11D-A29I-10	24085243	92126304	15223236	71	3233										
HHIPL1	84439	hgsc.bcm.edu	37	chr14	100141689	100141689	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0776699029126214	8	0.467760285596346	1.77087378640777	3.80461165048544	0.936519790888723	0.637186343068696	1	0	cgggcgcgtggaggtgttcgTgggcggacgctggggcaccg	22	10	0	0	rs7158073	byfrequency	TCGA-OR-A5JK-01A-11D-A29I-10	TCGA-OR-A5JK-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	30ef35e3-dbfe-4e8d-a398-fa59ec891031	9f7d2d3c-956c-4894-ba05-6349fc18bec2	.	HHIPL1-70	NM_001127258	exon9	c.T2075C	p.V692A	TGTTCGTGGGCGG	.	20	16	0	0	T|0.478;C|0.522	0	0	0	0	0	C	100141689	T	C	100141689	3	2	16	1	0	0	0	0	1	0	0	0	7114	1696	59	4	2210	4	HHIPL1	14	100141689	Missense_Mutation	SNP	T	TCGA-OR-A5JK-01A-11D-A29I-10	8015385	100141689	7207851	72	3234										
PDIA2	64714	broad.mit.edu	37	chr16	334557	334557	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0776699029126214	8	0.467760285596346	1.77087378640777	3.80461165048544	0.936519790888723	0.637186343068696	1	0	accctacgctcaagttcttcCgcaatgggaaccgcacgcac	8	16	2	0	novel		TCGA-OR-A5JK-01A-11D-A29I-10	TCGA-OR-A5JK-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	30ef35e3-dbfe-4e8d-a398-fa59ec891031	9f7d2d3c-956c-4894-ba05-6349fc18bec2	.	PDIA2-91	NM_006849	exon2	c.C370T	p.R124C	TTCTTCCGCAATG	.	149	4	151	0	.	0	0	0	0	0	T	334557	C	T	334557	3	4	16	1	0	0	0	0	1	0	0	0	11697	652	23	1	376	1	PDIA2	16	334557	Missense_Mutation	SNP	C	TCGA-OR-A5JK-01A-11D-A29I-10		334557	90020196	73	3235										
RABEP2	79874	broad.mit.edu	37	chr16	28922226	28922226	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0776699029126214	8	0.467760285596346	1.77087378640777	3.80461165048544	0.936519790888723	0.637186343068696	1	0	caccatctgcagctgcacccGctcctgggcctggctcacgg	11	18	2	0	novel		TCGA-OR-A5JK-01A-11D-A29I-10	TCGA-OR-A5JK-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	30ef35e3-dbfe-4e8d-a398-fa59ec891031	9f7d2d3c-956c-4894-ba05-6349fc18bec2	.	RABEP2-137	NM_024816	exon7	c.C1072T	p.R358W	GCACCCGCTCCTG	.	89	4	75	0	.	59	56	3	0	0	A	28922226	G	A	28922226	3	1	16	1	0	0	0	0	1	0	0	0	12997	1086	38	1	665	1	RABEP2	16	28922226	Missense_Mutation	SNP	G	TCGA-OR-A5JK-01A-11D-A29I-10	28587669	28922226	61432527	74	3236										
ZFPM1	161882	hgsc.bcm.edu	37	chr16	88599697	88599705	+	In_Frame_Del	DEL	AGCCTCTGG	AGCCTCTGG	-													0.0776699029126214	8	0.467760285596346	1.77087378640777	3.80461165048544	0.936519790888723	0.637186343068696	1	0	caacggagaggccagagcggAgcctctggcccagaatggag					novel		TCGA-OR-A5JK-01A-11D-A29I-10	TCGA-OR-A5JK-10A-01D-A29L-10	AGCCTCTGG	AGCCTCTGG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	30ef35e3-dbfe-4e8d-a398-fa59ec891031	9f7d2d3c-956c-4894-ba05-6349fc18bec2	.	ZFPM1-90	NM_153813	exon10	c.1331_1339del	p.444_447del	GAGCGGAGCCTCT	.	24	0	3	0	.	0	0	0	0	0	-	88599705	AGCCTCTGG	-	88599697	7	5	16	1	0	1	0	1	0	0	0	0	17694	304	11	0	1369	0	ZFPM1	16	88599697	In_Frame_Del	DEL	AGCCTCTGG	TCGA-OR-A5JK-01A-11D-A29I-10	59677471	88599697	1755056	75	3237										
P2RX5	5026	broad.mit.edu	37	chr17	3592842	3592842	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0776699029126214	8	0.467760285596346	1.77087378640777	3.80461165048544	0.936519790888723	0.637186343068696	1	0	gcggatcacggagcccagtcGgaagatggggcagtagtggt	18	8	1	1	novel		TCGA-OR-A5JK-01A-11D-A29I-10	TCGA-OR-A5JK-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	30ef35e3-dbfe-4e8d-a398-fa59ec891031	9f7d2d3c-956c-4894-ba05-6349fc18bec2	.	P2RX5-22	NM_002561	exon7	c.C697T	p.R233X	CCAGTCGGAAGAT	.	143	6	243	0	.	0	0	0	0	0	A	3592842	G	A	3592842	4	1	16	1	0	0	0	0	0	1	0	0	11372	1124	39	1	595	1	P2RX5	17	3592842	Nonsense_Mutation	SNP	G	TCGA-OR-A5JK-01A-11D-A29I-10		3592842	77602368	76	3238										
GLTPD2	388323	hgsc.bcm.edu	37	chr17	4693342	4693342	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0776699029126214	8	0.467760285596346	1.77087378640777	3.80461165048544	0.936519790888723	0.637186343068696	1	0	ggcgcgctgggaggcccggaCgcgggcgtgcagtgcagcga	21	12	0	0	rs35910358		TCGA-OR-A5JK-01A-11D-A29I-10	TCGA-OR-A5JK-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	30ef35e3-dbfe-4e8d-a398-fa59ec891031	9f7d2d3c-956c-4894-ba05-6349fc18bec2	.	GLTPD2-68	NM_001014985	exon4	c.C627A	p.D209E	CCCGGACGCGGGC	.	5	5	0	0	C|0.015;A|0.985	0	0	0	0	0	A	4693342	C	A	4693342	3	1	16	1	0	0	0	0	1	0	0	0	6493	535	19	2	641	2	GLTPD2	17	4693342	Missense_Mutation	SNP	C	TCGA-OR-A5JK-01A-11D-A29I-10	1100500	4693342	76501868	77	3239										
HES7	84667	bcgsc.ca	37	chr17	8026364	8026364	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0776699029126214	8	0.467760285596346	1.77087378640777	3.80461165048544	0.936519790888723	0.637186343068696	1	0	ctgacctggtcccgggtccgCtccagcagcagcagcctcag	12	17	1	1	rs61731639	byfrequency	TCGA-OR-A5JK-01A-11D-A29I-10	TCGA-OR-A5JK-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	30ef35e3-dbfe-4e8d-a398-fa59ec891031	9f7d2d3c-956c-4894-ba05-6349fc18bec2	.	HES7-658	NM_001165967	exon2	c.G123A	p.E41E	GGTCCGCTCCAGC	.	148	7	283	2	C|0.854;T|0.146	0	0	0	0	0	T	8026364	C	T	8026364	2	4	16	1	0	0	0	0	0	0	0	1	7092	796	28	3		3	HES7	17	8026364	Silent	SNP	C	TCGA-OR-A5JK-01A-11D-A29I-10	3333022	8026364	73168846	78	3240										
NF1	4763	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	29533326	29533326	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0776699029126214	8	0.467760285596346	1.77087378640777	3.80461165048544	0.936519790888723	0.637186343068696	1	0	gttgaacttcgaaatatgttTggtgaaacacttcataaagc	8	6	1	2	novel		TCGA-OR-A5JK-01A-11D-A29I-10	TCGA-OR-A5JK-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	30ef35e3-dbfe-4e8d-a398-fa59ec891031	9f7d2d3c-956c-4894-ba05-6349fc18bec2	.	NF1-3353	NM_001128147	exon12	c.T1329C	p.F443F	TATGTTTGGTGAA	.	189	106	222	0	.	4	0	4	0	0	C	29533326	T	C	29533326	2	2	16	1	0	0	0	0	0	0	0	1	10385	1809	63	4		4	NF1	17	29533326	Silent	SNP	T	TCGA-OR-A5JK-01A-11D-A29I-10	21506962	29533326	51661884	79	3241										
RARA	5914	bcgsc.ca	37	chr17	38508263	38508287	+	Frame_Shift_Del	DEL	GTGCGCAAAGCGCACCAGGAAACCT	GTGCGCAAAGCGCACCAGGAAACCT	-													0.0776699029126214	8	0.467760285596346	1.77087378640777	3.80461165048544	0.936519790888723	0.637186343068696	1	0	tgggggagctcattgagaagGtgcgcaaagcgcaccaggaa					novel		TCGA-OR-A5JK-01A-11D-A29I-10	TCGA-OR-A5JK-10A-01D-A29L-10	GTGCGCAAAGCGCACCAGGAAACCT	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	30ef35e3-dbfe-4e8d-a398-fa59ec891031	9f7d2d3c-956c-4894-ba05-6349fc18bec2	.	RARA-1083	NM_000964	exon5	c.571_595del	p.191_199del	GAGAAGGTGCGCA	.	19	5	73	0	.	0	0	0	0	0	-	38508287	GTGCGCAAAGCGCACCAGGAAACCT	-	38508263	7	5	16	1	0	1	0	1	0	0	0	0	13087	1261	44	0	752	0	RARA	17	38508263	Frame_Shift_Del	DEL	GTGCGCAAAGCGCACCAGGAAACCT	TCGA-OR-A5JK-01A-11D-A29I-10	8974937	38508263	42686947	80	3242										
KRT39	390792	bcgsc.ca	37	chr17	39116728	39116728	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0776699029126214	8	0.467760285596346	1.77087378640777	3.80461165048544	0.936519790888723	0.637186343068696	1	0	tgtagcgagcctctgtctccGttaggatgcactcttgggaa	12	10	3	0	rs17843021	byfrequency	TCGA-OR-A5JK-01A-11D-A29I-10	TCGA-OR-A5JK-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	30ef35e3-dbfe-4e8d-a398-fa59ec891031	9f7d2d3c-956c-4894-ba05-6349fc18bec2	.	.	NM_213656	exon6	c.C1022T	p.T341M	GTCTCCGTTAGGA	.	98	5	121	0	G|0.868;A|0.132	0	0	0	0	0	A	39116728	G	A	39116728	3	1	16	1	0	0	0	0	1	0	0	0	8497	1145	40	1	461	1	KRT39	17	39116728	Missense_Mutation	SNP	G	TCGA-OR-A5JK-01A-11D-A29I-10	608465	39116728	42078482	81	3243										
ASB16	92591	bcgsc.ca	37	chr17	42248346	42248346	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0776699029126214	8	0.467760285596346	1.77087378640777	3.80461165048544	0.936519790888723	0.637186343068696	1	0	cgagacccagctgtccaccaAgccctcttctccggcaacct	7	19	2	1	rs7218599	byfrequency	TCGA-OR-A5JK-01A-11D-A29I-10	TCGA-OR-A5JK-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	30ef35e3-dbfe-4e8d-a398-fa59ec891031	9f7d2d3c-956c-4894-ba05-6349fc18bec2	.	ASB16-227	NM_080863	exon1	c.A189T	p.Q63H	CCACCAAGCCCTC	.	132	5	201	1	A|0.093;T|0.907	0	0	0	0	0	T	42248346	A	T	42248346	3	4	16	1	0	0	0	0	1	0	0	0	1021	69	3	5	191	5	ASB16	17	42248346	Missense_Mutation	SNP	A	TCGA-OR-A5JK-01A-11D-A29I-10	3131618	42248346	38946864	82	3244										
FOXJ1	2302	hgsc.bcm.edu	37	chr17	74133974	74133974	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0776699029126214	8	0.467760285596346	1.77087378640777	3.80461165048544	0.936519790888723	0.637186343068696	1	0	tgctgggcctcggtattcacCgtcagcggcccggcccgggg	16	15	2	0	rs894542	byfrequency	TCGA-OR-A5JK-01A-11D-A29I-10	TCGA-OR-A5JK-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	30ef35e3-dbfe-4e8d-a398-fa59ec891031	9f7d2d3c-956c-4894-ba05-6349fc18bec2	.	FOXJ1-227	NM_001454	exon3	c.G726A	p.T242T	ATTCACCGTCAGC	.	9	8	1	0	C|0.925;T|0.075	0	0	0	0	0	T	74133974	C	T	74133974	2	4	16	1	0	0	0	0	0	0	0	1	6030	639	23	1		1	FOXJ1	17	74133974	Silent	SNP	C	TCGA-OR-A5JK-01A-11D-A29I-10	31885628	74133974	7061236	83	3245										
SYT4	6860	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr18	40854213	40854213	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0776699029126214	8	0.467760285596346	1.77087378640777	3.80461165048544	0.936519790888723	0.637186343068696	1	0	taggttttcagggtaaatatCaactcccttaagcacatgca	7	9	2	0	novel		TCGA-OR-A5JK-01A-11D-A29I-10	TCGA-OR-A5JK-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	30ef35e3-dbfe-4e8d-a398-fa59ec891031	9f7d2d3c-956c-4894-ba05-6349fc18bec2	.	SYT4-132	NM_020783	exon2	c.G181A	p.D61N	AAATATCAACTCC	.	64	15	46	0	.	0	0	0	0	0	T	40854213	C	T	40854213	3	4	16	1	0	0	0	0	1	0	0	0	15513	826	29	3	1108	3	SYT4	18	40854213	Missense_Mutation	SNP	C	TCGA-OR-A5JK-01A-11D-A29I-10		40854213	37223035	84	3246										
ANKRD24	170961	hgsc.bcm.edu	37	chr19	4217956	4217956	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0776699029126214	8	0.467760285596346	1.77087378640777	3.80461165048544	0.936519790888723	0.637186343068696	1	0	ctggagctgcggggccgggcAgccagtctggagcaggaggt	20	10	1	0	rs6510794	byfrequency	TCGA-OR-A5JK-01A-11D-A29I-10	TCGA-OR-A5JK-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	30ef35e3-dbfe-4e8d-a398-fa59ec891031	9f7d2d3c-956c-4894-ba05-6349fc18bec2	.	ANKRD24-68	NM_133475	exon18	c.A2799G	p.A933A	CCGGGCAGCCAGT	.	11	4	0	0	A|0.541;G|0.459	1	1	0	0	0	G	4217956	A	G	4217956	2	3	16	1	0	0	0	0	0	0	0	1	653	175	7	4		4	ANKRD24	19	4217956	Silent	SNP	A	TCGA-OR-A5JK-01A-11D-A29I-10		4217956	54911027	85	3247										
MUC16	94025	broad.mit.edu;bcgsc.ca	37	chr19	9049512	9049512	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0776699029126214	8	0.467760285596346	1.77087378640777	3.80461165048544	0.936519790888723	0.637186343068696	1	0	ggctattgaaggtgtggcatCtgattcatgatgagaaaaat	12	4	2	4	novel		TCGA-OR-A5JK-01A-11D-A29I-10	TCGA-OR-A5JK-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	30ef35e3-dbfe-4e8d-a398-fa59ec891031	9f7d2d3c-956c-4894-ba05-6349fc18bec2	.	MUC16-566	NM_024690	exon5	c.G32119C	p.D10707H	TGGCATCTGATTC	.	251	7	195	0	.	0	0	0	0	0	G	9049512	C	G	9049512	3	3	16	1	0	0	0	0	1	0	0	0	10001	913	32	3	11724	3	MUC16	19	9049512	Missense_Mutation	SNP	C	TCGA-OR-A5JK-01A-11D-A29I-10	4831556	9049512	50079471	86	3248										
MAP1S	55201	hgsc.bcm.edu	37	chr19	17837425	17837425	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0776699029126214	8	0.467760285596346	1.77087378640777	3.80461165048544	0.936519790888723	0.637186343068696	1	0	cgccgagcgcacgctggcctCtgtgtgcgccctgctggtgt	15	15	1	0	rs17710707	byfrequency	TCGA-OR-A5JK-01A-11D-A29I-10	TCGA-OR-A5JK-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	30ef35e3-dbfe-4e8d-a398-fa59ec891031	9f7d2d3c-956c-4894-ba05-6349fc18bec2	.	MAP1S-90	NM_018174	exon5	c.C1232G	p.S411C	TGGCCTCTGTGTG	.	39	15	3	0	C|0.883;G|0.117	2	2	0	0	0	G	17837425	C	G	17837425	3	3	16	1	0	0	0	0	1	0	0	0	9262	913	32	3	1250	3	MAP1S	19	17837425	Missense_Mutation	SNP	C	TCGA-OR-A5JK-01A-11D-A29I-10	8787913	17837425	41291558	87	3249										
FCHO1	23149	bcgsc.ca	37	chr19	17885270	17885270	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0776699029126214	8	0.467760285596346	1.77087378640777	3.80461165048544	0.936519790888723	0.637186343068696	1	0	agccggcgggagcgggagccAgagccacctgcagctgtgtg	18	12	0	1	rs2287859	byfrequency	TCGA-OR-A5JK-01A-11D-A29I-10	TCGA-OR-A5JK-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	30ef35e3-dbfe-4e8d-a398-fa59ec891031	9f7d2d3c-956c-4894-ba05-6349fc18bec2	.	FCHO1-90	NM_001161358	exon12	c.A903G	p.P301P	GGAGCCAGAGCCA	.	118	6	156	0	A|0.495;G|0.505	0	0	0	0	0	G	17885270	A	G	17885270	2	3	16	1	0	0	0	0	0	0	0	1	5806	175	7	4		4	FCHO1	19	17885270	Silent	SNP	A	TCGA-OR-A5JK-01A-11D-A29I-10	47845	17885270	41243713	88	3250										
FBXO17	115290	hgsc.bcm.edu	37	chr19	39440918	39440918	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0776699029126214	8	0.467760285596346	1.77087378640777	3.80461165048544	0.936519790888723	0.637186343068696	1	0	agcgcgtccagggccagggaTgggtccgccggcagccgtcg	18	14	0	0	rs2304117	byfrequency	TCGA-OR-A5JK-01A-11D-A29I-10	TCGA-OR-A5JK-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	30ef35e3-dbfe-4e8d-a398-fa59ec891031	9f7d2d3c-956c-4894-ba05-6349fc18bec2	.	FBXO17-226	NM_148169	exon2	c.A69G	p.P23P	CAGGGATGGGTCC	.	22	6	3	0	T|0.545;C|0.455	2	0	2	0	0	C	39440918	T	C	39440918	2	2	16	1	0	0	0	0	0	0	0	1	5749	1451	51	4		4	FBXO17	19	39440918	Silent	SNP	T	TCGA-OR-A5JK-01A-11D-A29I-10	21555648	39440918	19688065	89	3251										
MYBPC2	4606	bcgsc.ca	37	chr19	50957397	50957397	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0776699029126214	8	0.467760285596346	1.77087378640777	3.80461165048544	0.936519790888723	0.637186343068696	1	0	ccatcaaggtcaccaaccccGtcggcgaggacgtggcttcc	11	16	2	0	rs25665	bycluster;byfrequency;bysubmitter;by1000genomes	TCGA-OR-A5JK-01A-11D-A29I-10	TCGA-OR-A5JK-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	30ef35e3-dbfe-4e8d-a398-fa59ec891031	9f7d2d3c-956c-4894-ba05-6349fc18bec2	.	MYBPC2-67	NM_004533	exon17	c.G1870A	p.V624I	AACCCCGTCGGCG	.	327	8	311	1	G|0.772;A|0.228	0	0	0	0	0	A	50957397	G	A	50957397	3	1	16	1	0	0	0	0	1	0	0	0	10040	1145	40	1	1936	1	MYBPC2	19	50957397	Missense_Mutation	SNP	G	TCGA-OR-A5JK-01A-11D-A29I-10	11516479	50957397	8171586	90	3252										
ZNF160	90338	bcgsc.ca	37	chr19	53572917	53572917	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0776699029126214	8	0.467760285596346	1.77087378640777	3.80461165048544	0.936519790888723	0.637186343068696	1	0	cgaacagtaaaggttttgccGcactcactgcatttgtaagg	10	9	1	0	rs10407463	byfrequency	TCGA-OR-A5JK-01A-11D-A29I-10	TCGA-OR-A5JK-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	30ef35e3-dbfe-4e8d-a398-fa59ec891031	9f7d2d3c-956c-4894-ba05-6349fc18bec2	.	ZNF160-90	NM_001102603	exon7	c.C870T	p.C290C	TTTGCCGCACTCA	.	189	8	152	0	G|0.843;A|0.157	3	3	0	0	0	A	53572917	G	A	53572917	2	1	16	1	0	0	0	0	0	0	0	1	17776	1079	38	1		1	ZNF160	19	53572917	Silent	SNP	G	TCGA-OR-A5JK-01A-11D-A29I-10	2615520	53572917	5556066	91	3253										
LILRB2	10288	bcgsc.ca	37	chr19	54782919	54782919	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0776699029126214	8	0.467760285596346	1.77087378640777	3.80461165048544	0.936519790888723	0.637186343068696	1	0	caggctttccccaggggccaCgacaggacccggctgcactg	13	16	0	0	rs386056	byfrequency	TCGA-OR-A5JK-01A-11D-A29I-10	TCGA-OR-A5JK-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	30ef35e3-dbfe-4e8d-a398-fa59ec891031	9f7d2d3c-956c-4894-ba05-6349fc18bec2	.	LILRB2-91	NM_005874	exon6	c.G703A	p.V235M	GGGCCACGACAGG	.	411	11	476	6	C|0.787;T|0.213	2	2	0	0	0	T	54782919	C	T	54782919	3	4	16	1	0	0	0	0	1	0	0	0	8814	536	19	1	1129	1	LILRB2	19	54782919	Missense_Mutation	SNP	C	TCGA-OR-A5JK-01A-11D-A29I-10	1210002	54782919	4346064	92	3254										
ZNF814	730051	ucsc.edu	37	chr19	58384445	58384445	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0776699029126214	8	0.467760285596346	1.77087378640777	3.80461165048544	0.936519790888723	0.637186343068696	1	0	ccacattcactgcactcataAggcttttctccagtgtgaat	6	12	3	1	novel		TCGA-OR-A5JK-01A-11D-A29I-10	TCGA-OR-A5JK-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	30ef35e3-dbfe-4e8d-a398-fa59ec891031	9f7d2d3c-956c-4894-ba05-6349fc18bec2	.	.	NM_001144989	exon3	c.T2313C	p.P771P	CTCATAAGGCTTT	.	82	2	63	0	.	7	6	1	0	0	G	58384445	A	G	58384445	2	3	16	1	0	0	0	0	0	0	0	1	18213	59	3	4		4	ZNF814	19	58384445	Silent	SNP	A	TCGA-OR-A5JK-01A-11D-A29I-10	3601526	58384445	744538	93	3255										
ANGPT4	51378	bcgsc.ca	37	chr20	854940	854940	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0776699029126214	8	0.467760285596346	1.77087378640777	3.80461165048544	0.936519790888723	0.637186343068696	1	0	cacctacctccagacatcacTtgggcacacttgcagagaca	7	15	1	2	rs944110	byfrequency	TCGA-OR-A5JK-01A-11D-A29I-10	TCGA-OR-A5JK-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	30ef35e3-dbfe-4e8d-a398-fa59ec891031	9f7d2d3c-956c-4894-ba05-6349fc18bec2	.	ANGPT4-92	NM_015985	exon8	c.A1338G	p.Q446Q	CATCACTTGGGCA	.	286	8	271	0	T|0.549;C|0.451	0	0	0	0	0	C	854940	T	C	854940	2	2	16	1	0	0	0	0	0	0	0	1	612	1606	56	4		4	ANGPT4	20	854940	Silent	SNP	T	TCGA-OR-A5JK-01A-11D-A29I-10		854940	62170580	94	3256										
LRRN4	164312	hgsc.bcm.edu	37	chr20	6033025	6033025	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0776699029126214	8	0.467760285596346	1.77087378640777	3.80461165048544	0.936519790888723	0.637186343068696	1	0	gctgctcagcgcgggcccggTgcacggcggcagagcggcca	18	15	1	1	rs1884643	byfrequency	TCGA-OR-A5JK-01A-11D-A29I-10	TCGA-OR-A5JK-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	30ef35e3-dbfe-4e8d-a398-fa59ec891031	9f7d2d3c-956c-4894-ba05-6349fc18bec2	.	LRRN4-93	NM_152611	exon2	c.A421G	p.T141A	GCCCGGTGCACGG	.	5	5	0	0	T|0.614;C|0.386	0	0	0	0	0	C	6033025	T	C	6033025	3	2	16	1	0	0	0	0	1	0	0	0	9064	1696	59	4	1817	4	LRRN4	20	6033025	Missense_Mutation	SNP	T	TCGA-OR-A5JK-01A-11D-A29I-10	5178085	6033025	56992495	95	3257										
MYLK2	85366	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr20	30414412	30414412	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0776699029126214	8	0.467760285596346	1.77087378640777	3.80461165048544	0.936519790888723	0.637186343068696	1	0	cttccctggtccccaggaaaTggtgttgctggagattgagg	14	9	0	2	novel		TCGA-OR-A5JK-01A-11D-A29I-10	TCGA-OR-A5JK-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	30ef35e3-dbfe-4e8d-a398-fa59ec891031	9f7d2d3c-956c-4894-ba05-6349fc18bec2	.	MYLK2-760	NM_033118	exon7	c.T977C	p.M326T	AGGAAATGGTGTT	.	163	59	170	0	.	0	0	0	0	0	C	30414412	T	C	30414412	3	2	16	1	0	0	0	0	1	0	0	0	10085	1464	51	4	999	4	MYLK2	20	30414412	Missense_Mutation	SNP	T	TCGA-OR-A5JK-01A-11D-A29I-10	24381387	30414412	32611108	96	3258										
DNTTIP1	116092	hgsc.bcm.edu	37	chr20	44420682	44420682	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0776699029126214	8	0.467760285596346	1.77087378640777	3.80461165048544	0.936519790888723	0.637186343068696	1	0	gccgagcagccgcggggaccTagcggggccgagaggggcgg	22	12	0	1	rs2664591	byfrequency	TCGA-OR-A5JK-01A-11D-A29I-10	TCGA-OR-A5JK-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	30ef35e3-dbfe-4e8d-a398-fa59ec891031	9f7d2d3c-956c-4894-ba05-6349fc18bec2	.	DNTTIP1-91	NM_052951	exon1	c.T39C	p.P13P	GGGACCTAGCGGG	.	10	7	2	0	T|0.311;C|0.689	0	0	0	0	0	C	44420682	T	C	44420682	2	2	16	1	0	0	0	0	0	0	0	1	4692	1509	53	4		4	DNTTIP1	20	44420682	Silent	SNP	T	TCGA-OR-A5JK-01A-11D-A29I-10	14006270	44420682	18604838	97	3259										
MMP9	4318	broad.mit.edu;bcgsc.ca	37	chr20	44641917	44641917	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0776699029126214	8	0.467760285596346	1.77087378640777	3.80461165048544	0.936519790888723	0.637186343068696	1	0	ctcgccctgaacctgagccaCggcctccaaccaccaccaca	6	21	0	2	novel		TCGA-OR-A5JK-01A-11D-A29I-10	TCGA-OR-A5JK-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	30ef35e3-dbfe-4e8d-a398-fa59ec891031	9f7d2d3c-956c-4894-ba05-6349fc18bec2	.	MMP9-652	NM_004994	exon9	c.C1354T	p.R452W	GAGCCACGGCCTC	.	88	5	90	0	.	0	0	0	0	0	T	44641917	C	T	44641917	3	4	16	1	0	0	0	0	1	0	0	0	9697	527	19	1	1388	1	MMP9	20	44641917	Missense_Mutation	SNP	C	TCGA-OR-A5JK-01A-11D-A29I-10	221235	44641917	18383603	98	3260										
CASS4	57091	bcgsc.ca	37	chr20	55033420	55033420	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0776699029126214	8	0.467760285596346	1.77087378640777	3.80461165048544	0.936519790888723	0.637186343068696	1	0	ctggccctcttatacctcagCcttcgagtcaacagactcct	6	16	3	1	rs35031530	byfrequency	TCGA-OR-A5JK-01A-11D-A29I-10	TCGA-OR-A5JK-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	30ef35e3-dbfe-4e8d-a398-fa59ec891031	9f7d2d3c-956c-4894-ba05-6349fc18bec2	.	CASS4-25	NM_020356	exon6	c.C1978T	p.P660S	CCTCAGCCTTCGA	.	107	5	100	0	C|0.905;T|0.095	1	1	0	0	0	T	55033420	C	T	55033420	3	4	16	1	0	0	0	0	1	0	0	0	2689	739	26	3	2000	3	CASS4	20	55033420	Missense_Mutation	SNP	C	TCGA-OR-A5JK-01A-11D-A29I-10	10391503	55033420	7992100	99	3261										
PRODH	5625	bcgsc.ca	37	chr22	18912678	18912678	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0776699029126214	8	0.467760285596346	1.77087378640777	3.80461165048544	0.936519790888723	0.637186343068696	1	0	cctgcggtccccgaaggcccAgtgggcctggtattgcttgt	14	13	0	0	rs4819756	byfrequency	TCGA-OR-A5JK-01A-11D-A29I-10	TCGA-OR-A5JK-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	30ef35e3-dbfe-4e8d-a398-fa59ec891031	9f7d2d3c-956c-4894-ba05-6349fc18bec2	.	PRODH-289	NM_016335	exon5	c.T553C	p.W185R	AGGCCCAGTGGGC	.	161	6	232	1	A|0.284;G|0.716	0	0	0	0	0	G	18912678	A	G	18912678	3	3	16	1	0	0	0	0	1	0	0	0	12580	188	7	4	1293	4	PRODH	22	18912678	Missense_Mutation	SNP	A	TCGA-OR-A5JK-01A-11D-A29I-10		18912678	32391888	100	3262										
MMP11	4320	bcgsc.ca	37	chr22	24124623	24124623	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0776699029126214	8	0.467760285596346	1.77087378640777	3.80461165048544	0.936519790888723	0.637186343068696	1	0	gccccgcagggccactgactGgagaggggtgccctctgaga	16	13	1	3	novel		TCGA-OR-A5JK-01A-11D-A29I-10	TCGA-OR-A5JK-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	30ef35e3-dbfe-4e8d-a398-fa59ec891031	9f7d2d3c-956c-4894-ba05-6349fc18bec2	.	MMP11-291	NM_005940	exon7	c.G1286T	p.W429L	CTGACTGGAGAGG	.	90	4	125	0	.	8	8	0	0	0	T	24124623	G	T	24124623	3	4	16	1	0	0	0	0	1	0	0	0	9678	1357	47	3	1312	3	MMP11	22	24124623	Missense_Mutation	SNP	G	TCGA-OR-A5JK-01A-11D-A29I-10	5211945	24124623	27179943	101	3263										
PKDREJ	10343	bcgsc.ca	37	chr22	46656246	46656246	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0776699029126214	8	0.467760285596346	1.77087378640777	3.80461165048544	0.936519790888723	0.637186343068696	1	0	cagaacctccctaagcactgTgctgtccacttgaaagctaa	7	13	0	2	rs7291444	byfrequency	TCGA-OR-A5JK-01A-11D-A29I-10	TCGA-OR-A5JK-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	30ef35e3-dbfe-4e8d-a398-fa59ec891031	9f7d2d3c-956c-4894-ba05-6349fc18bec2	.	PKDREJ-156	NM_006071	exon1	c.A2974C	p.T992P	GCACTGTGCTGTC	.	191	7	267	3	A|0.001;G|0.248;T|0.751	0	0	0	0	0	G	46656246	T	G	46656246	3	3	16	1	0	0	0	0	1	0	0	0	11999	1696	59	5	3791	5	PKDREJ	22	46656246	Missense_Mutation	SNP	T	TCGA-OR-A5JK-01A-11D-A29I-10	22531623	46656246	4648320	102	3264										
DCAF8L2	347442	hgsc.bcm.edu	37	chrX	27765408	27765408	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0776699029126214	8	0.467760285596346	1.77087378640777	3.80461165048544	0.936519790888723	0.637186343068696	1	0	gaggaggaggaagaggaggaGgaggaggaggaggaggagga	26	0	0	1	novel		TCGA-OR-A5JK-01A-11D-A29I-10	TCGA-OR-A5JK-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	30ef35e3-dbfe-4e8d-a398-fa59ec891031	9f7d2d3c-956c-4894-ba05-6349fc18bec2	.	DCAF8L2-42	NM_001136533	exon1	c.G396A	p.E132E	GGAGGAGGAGGAG	.	22	4	24	0	.	1	1	0	0	0	A	27765408	G	A	27765408	2	1	16	1	0	0	0	0	0	0	0	1	4284	991	35	3		3	DCAF8L2	23	27765408	Silent	SNP	G	TCGA-OR-A5JK-01A-11D-A29I-10		27765408	127505152	103	3265										
FAM155B	27112	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chrX	68725226	68725226	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0776699029126214	8	0.467760285596346	1.77087378640777	3.80461165048544	0.936519790888723	0.637186343068696	1	0	caggccgagcgacaaaccttGcgccgactccgagcgggcgc	14	16	0	0	novel		TCGA-OR-A5JK-01A-11D-A29I-10	TCGA-OR-A5JK-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	30ef35e3-dbfe-4e8d-a398-fa59ec891031	9f7d2d3c-956c-4894-ba05-6349fc18bec2	.	FAM155B-131	NM_015686	exon1	c.G101C	p.C34S	AACCTTGCGCCGA	.	55	44	30	0	.	0	0	0	0	0	C	68725226	G	C	68725226	3	2	16	1	0	0	0	0	1	0	0	0	5482	1319	46	3	103	3	FAM155B	23	68725226	Missense_Mutation	SNP	G	TCGA-OR-A5JK-01A-11D-A29I-10	40959818	68725226	86545334	104	3266										
UTP14A	10813	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chrX	129059084	129059084	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0776699029126214	8	0.467760285596346	1.77087378640777	3.80461165048544	0.936519790888723	0.637186343068696	1	0	gcccctaaggagaagaaaaaGaaggagcaaatgatcgacct	11	8	0	4	novel		TCGA-OR-A5JK-01A-11D-A29I-10	TCGA-OR-A5JK-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	30ef35e3-dbfe-4e8d-a398-fa59ec891031	9f7d2d3c-956c-4894-ba05-6349fc18bec2	.	UTP14A-132	NM_006649	exon12	c.G1662A	p.K554K	GAAAAAGAAGGAG	.	70	5	63	0	.	12	12	0	0	0	A	129059084	G	A	129059084	2	1	16	1	0	0	0	0	0	0	0	1	17133	933	33	3		3	UTP14A	23	129059084	Silent	SNP	G	TCGA-OR-A5JK-01A-11D-A29I-10	60333858	129059084	26211476	105	3267										
SRM	6723	hgsc.bcm.edu	37	chr1	11119899	11119899	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0490196078431373	5	0.929330005145667	1.34779750164366	0.970414201183432	1.49294492489759	0.206349206349206	0.913832199546484	0	agcagctgctccacctgcagTgacagggcctggccgggcca	14	15	0	1	rs7545802		TCGA-OR-A5JL-01A-11D-A29I-10	TCGA-OR-A5JL-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8f0c115d-1ae8-4660-8454-e09ef9150f48	11736376-4bb5-4a2d-b14a-f01a651e41eb	.	SRM-90	NM_003132	exon1	c.A102G	p.S34S	CTGCAGTGACAGG	.	10	10	0	0	T|0.001;C|0.999	22	0	22	0	0	C	11119899	T	C	11119899	2	2	17	1	0	0	0	0	0	0	0	1	15188	1683	59	4		4	SRM	1	11119899	Silent	SNP	T	TCGA-OR-A5JL-01A-11D-A29I-10		11119899	238130722	1	3268										
AKR7L	246181	hgsc.bcm.edu	37	chr1	19600479	19600501	+	RNA	DEL	TGCGGCGCTGGTGGGCGCGTCCA	TGCGGCGCTGGTGGGCGCGTCCA	-													0.0490196078431373	5	0.929330005145667	1.34779750164366	0.970414201183432	1.49294492489759	0.206349206349206	0.913832199546484	0	tccaggaaggcgcgcgtgacTgcggcgctggtgggcgcgtc					novel		TCGA-OR-A5JL-01A-11D-A29I-10	TCGA-OR-A5JL-10A-01D-A29L-10	TGCGGCGCTGGTGGGCGCGTCCA	TGCGGCGCTGGTGGGCGCGTCCA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8f0c115d-1ae8-4660-8454-e09ef9150f48	11736376-4bb5-4a2d-b14a-f01a651e41eb	.	AKR7L-90	.	.	.	.	CGTGACTGCGGCG	.	62	19	27	0	.	0	0	0	0	0	-	19600501	TGCGGCGCTGGTGGGCGCGTCCA	-	19600479	6	5	17	0	1	1	0	1	0	0	0	0	477	1567	55	0		0	AKR7L	1	19600479	RNA	DEL	TGCGGCGCTGGTGGGCGCGTCCA	TCGA-OR-A5JL-01A-11D-A29I-10	8480580	19600479	229650142	2	3269										
RPS6KA1	6195	hgsc.bcm.edu	37	chr1	26856462	26856462	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0490196078431373	5	0.929330005145667	1.34779750164366	0.970414201183432	1.49294492489759	0.206349206349206	0.913832199546484	0	ccgctcatggagctagtgccTctggacccggaggtgagtga	15	11	2	2	rs11800553	byfrequency	TCGA-OR-A5JL-01A-11D-A29I-10	TCGA-OR-A5JL-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8f0c115d-1ae8-4660-8454-e09ef9150f48	11736376-4bb5-4a2d-b14a-f01a651e41eb	.	RPS6KA1-510	NM_002953	exon1	c.T51G	p.P17P	AGTGCCTCTGGAC	.	5	5	0	0	T|0.065;G|0.935	0	0	0	0	0	G	26856462	T	G	26856462	2	3	17	1	0	0	0	0	0	0	0	1	13685	1538	54	5		5	RPS6KA1	1	26856462	Silent	SNP	T	TCGA-OR-A5JL-01A-11D-A29I-10	7255983	26856462	222394159	3	3270										
OPRD1	4985	hgsc.bcm.edu	37	chr1	29138975	29138975	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0490196078431373	5	0.929330005145667	1.34779750164366	0.970414201183432	1.49294492489759	0.206349206349206	0.913832199546484	0	ggacgcctaccctagcgcctGccccagcgctggcgccaatg	12	18	0	0	rs1042114	byfrequency	TCGA-OR-A5JL-01A-11D-A29I-10	TCGA-OR-A5JL-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8f0c115d-1ae8-4660-8454-e09ef9150f48	11736376-4bb5-4a2d-b14a-f01a651e41eb	.	OPRD1-69	NM_000911	exon1	c.G80T	p.C27F	GCGCCTGCCCCAG	.	7	7	0	0	G|0.061;T|0.939	0	0	0	0	0	T	29138975	G	T	29138975	3	4	17	1	0	0	0	0	1	0	0	0	10913	1319	46	3	82	3	OPRD1	1	29138975	Missense_Mutation	SNP	G	TCGA-OR-A5JL-01A-11D-A29I-10	2282513	29138975	220111646	4	3271										
AGL	178	bcgsc.ca	37	chr1	100358103	100358103	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0490196078431373	5	0.929330005145667	1.34779750164366	0.970414201183432	1.49294492489759	0.206349206349206	0.913832199546484	0	cacctgccctaatggatgtaCcttataggttaaatgagatc	8	9	0	1	rs3753494	byfrequency	TCGA-OR-A5JL-01A-11D-A29I-10	TCGA-OR-A5JL-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8f0c115d-1ae8-4660-8454-e09ef9150f48	11736376-4bb5-4a2d-b14a-f01a651e41eb	.	AGL-92	NM_000644	exon24	c.C3199T	p.P1067S	GATGTACCTTATA	.	112	6	128	1	C|0.869;T|0.131	5	5	0	0	0	T	100358103	C	T	100358103	3	4	17	1	0	0	0	0	1	0	0	0	384	507	18	3	3358	3	AGL	1	100358103	Missense_Mutation	SNP	C	TCGA-OR-A5JL-01A-11D-A29I-10	71219128	100358103	148892518	5	3272										
CHIA	27159	bcgsc.ca	37	chr1	111861974	111861974	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0490196078431373	5	0.929330005145667	1.34779750164366	0.970414201183432	1.49294492489759	0.206349206349206	0.913832199546484	0	atggcttaagcacaacaaatTtggaggcgccatggtctggg	13	8	1	0	rs2275254	byfrequency	TCGA-OR-A5JL-01A-11D-A29I-10	TCGA-OR-A5JL-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8f0c115d-1ae8-4660-8454-e09ef9150f48	11736376-4bb5-4a2d-b14a-f01a651e41eb	.	CHIA-91	NM_201653	exon11	c.T1061C	p.F354S	ACAAATTTGGAGG	.	155	5	163	1	T|0.537;C|0.463	3	3	0	0	0	C	111861974	T	C	111861974	3	2	17	1	0	0	0	0	1	0	0	0	3348	1841	64	4	1099	4	CHIA	1	111861974	Missense_Mutation	SNP	T	TCGA-OR-A5JL-01A-11D-A29I-10	11503871	111861974	137388647	6	3273										
THEM4	117145	hgsc.bcm.edu	37	chr1	151881885	151881885	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0490196078431373	5	0.929330005145667	1.34779750164366	0.970414201183432	1.49294492489759	0.206349206349206	0.913832199546484	0	ggcgccggcctactggcggcAggcacagagcccccagcgtg	16	16	0	1	rs3748805		TCGA-OR-A5JL-01A-11D-A29I-10	TCGA-OR-A5JL-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8f0c115d-1ae8-4660-8454-e09ef9150f48	11736376-4bb5-4a2d-b14a-f01a651e41eb	.	THEM4-522	NM_053055	exon1	c.T50G	p.L17R	GGCGGCAGGCACA	.	9	5	0	0	T|0.073;G|0.921	2	0	2	0	0	C	151881885	A	C	151881885	3	2	17	1	0	0	0	0	1	0	0	0	15895	188	7	5	696	5	THEM4	1	151881885	Missense_Mutation	SNP	A	TCGA-OR-A5JL-01A-11D-A29I-10	40019911	151881885	97368736	7	3274										
TOR3A	64222	hgsc.bcm.edu	37	chr1	179051300	179051300	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0490196078431373	5	0.929330005145667	1.34779750164366	0.970414201183432	1.49294492489759	0.206349206349206	0.913832199546484	0	ggcgccagctttggctctttTtcctgctgctgctcccgggc	12	15	1	0	rs2296377	byfrequency	TCGA-OR-A5JL-01A-11D-A29I-10	TCGA-OR-A5JL-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8f0c115d-1ae8-4660-8454-e09ef9150f48	11736376-4bb5-4a2d-b14a-f01a651e41eb	.	TOR3A-90	NM_022371	exon1	c.T37C	p.F13L	CTCTTTTTCCTGC	.	6	4	0	0	T|0.229;C|0.771	0	0	0	0	0	C	179051300	T	C	179051300	3	2	17	1	0	0	0	0	1	0	0	0	16414	1841	64	4	39	4	TOR3A	1	179051300	Missense_Mutation	SNP	T	TCGA-OR-A5JL-01A-11D-A29I-10	27169415	179051300	70199321	8	3275										
C1orf106	55765	bcgsc.ca	37	chr1	200878026	200878026	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0490196078431373	5	0.929330005145667	1.34779750164366	0.970414201183432	1.49294492489759	0.206349206349206	0.913832199546484	0	aaccagcctggaccacccctAtgagaagcccaggaagtctt	9	14	1	1	rs41313912	byfrequency	TCGA-OR-A5JL-01A-11D-A29I-10	TCGA-OR-A5JL-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8f0c115d-1ae8-4660-8454-e09ef9150f48	11736376-4bb5-4a2d-b14a-f01a651e41eb	.	C1orf106-93	NM_018265	exon7	c.A1040T	p.Y347F	ACCCCTATGAGAA	.	133	5	153	1	A|0.992;T|0.008	0	0	0	0	0	T	200878026	A	T	200878026	3	4	17	1	0	0	0	0	1	0	0	0	1986	449	16	5	1024	5	C1orf106	1	200878026	Missense_Mutation	SNP	A	TCGA-OR-A5JL-01A-11D-A29I-10	21826726	200878026	48372595	9	3276										
PLXNA2	5362	broad.mit.edu	37	chr1	208390763	208390763	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0490196078431373	5	0.929330005145667	1.34779750164366	0.970414201183432	1.49294492489759	0.206349206349206	0.913832199546484	0	agagcgcacaatcaccccgtAcatggtgcccgtcttgttga	10	13	2	2	novel		TCGA-OR-A5JL-01A-11D-A29I-10	TCGA-OR-A5JL-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8f0c115d-1ae8-4660-8454-e09ef9150f48	11736376-4bb5-4a2d-b14a-f01a651e41eb	.	PLXNA2-92	NM_025179	exon2	c.T505C	p.Y169H	CCCCGTACATGGT	.	98	4	158	0	.	0	0	0	0	0	G	208390763	A	G	208390763	3	3	17	1	0	0	0	0	1	0	0	0	12149	391	14	4	5303	4	PLXNA2	1	208390763	Missense_Mutation	SNP	A	TCGA-OR-A5JL-01A-11D-A29I-10	7512737	208390763	40859858	10	3277										
SDC1	6382	hgsc.bcm.edu	37	chr2	20403998	20403998	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0490196078431373	5	0.929330005145667	1.34779750164366	0.970414201183432	1.49294492489759	0.206349206349206	0.913832199546484	0	gaatagccgtcaggagctgcGtgtccttccaagtggagggg	16	9	1	0	rs141315088	byfrequency	TCGA-OR-A5JL-01A-11D-A29I-10	TCGA-OR-A5JL-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8f0c115d-1ae8-4660-8454-e09ef9150f48	11736376-4bb5-4a2d-b14a-f01a651e41eb	.	SDC1-95	NM_002997	exon3	c.C203T	p.T68M	AGCTGCGTGTCCT	.	6	4	2	0	G|0.997;A|0.003	18	18	0	0	0	A	20403998	G	A	20403998	3	1	17	1	0	0	0	0	1	0	0	0	13986	1145	40	1	741	1	SDC1	2	20403998	Missense_Mutation	SNP	G	TCGA-OR-A5JL-01A-11D-A29I-10		20403998	222795375	11	3278										
ADCY3	109	bcgsc.ca	37	chr2	25046090	25046090	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0490196078431373	5	0.929330005145667	1.34779750164366	0.970414201183432	1.49294492489759	0.206349206349206	0.913832199546484	0	gcactcacagagtcaaaatcTgagatgatttcattgaggaa	9	7	4	4	rs1127568	byfrequency	TCGA-OR-A5JL-01A-11D-A29I-10	TCGA-OR-A5JL-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8f0c115d-1ae8-4660-8454-e09ef9150f48	11736376-4bb5-4a2d-b14a-f01a651e41eb	.	ADCY3-94	NM_004036	exon17	c.A2871G	p.S957S	AAAATCTGAGATG	.	128	7	150	0	T|0.343;C|0.656	0	0	0	0	0	C	25046090	T	C	25046090	2	2	17	1	0	0	0	0	0	0	0	1	295	1567	55	4		4	ADCY3	2	25046090	Silent	SNP	T	TCGA-OR-A5JL-01A-11D-A29I-10	4642092	25046090	218153283	12	3279										
KHK	3795	broad.mit.edu	37	chr2	27317364	27317364	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0490196078431373	5	0.929330005145667	1.34779750164366	0.970414201183432	1.49294492489759	0.206349206349206	0.913832199546484	0	gttttgtcctggatgacctcCgccgctattctgtggaccta	10	12	1	1	rs201995559		TCGA-OR-A5JL-01A-11D-A29I-10	TCGA-OR-A5JL-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8f0c115d-1ae8-4660-8454-e09ef9150f48	11736376-4bb5-4a2d-b14a-f01a651e41eb	.	KHK-115	NM_000221	exon3	c.C229T	p.R77C	GACCTCCGCCGCT	.	65	4	78	0	.	8	8	0	0	0	T	27317364	C	T	27317364	3	4	17	1	0	0	0	0	1	0	0	0	8170	652	23	1	239	1	KHK	2	27317364	Missense_Mutation	SNP	C	TCGA-OR-A5JL-01A-11D-A29I-10	2271274	27317364	215882009	13	3280										
CD8B	926	hgsc.bcm.edu	37	chr2	87088950	87088950	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0490196078431373	5	0.929330005145667	1.34779750164366	0.970414201183432	1.49294492489759	0.206349206349206	0.913832199546484	0	cgcgccgccgccttacctgtCagctgcgcggccaagaggag	14	16	1	1	novel		TCGA-OR-A5JL-01A-11D-A29I-10	TCGA-OR-A5JL-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8f0c115d-1ae8-4660-8454-e09ef9150f48	11736376-4bb5-4a2d-b14a-f01a651e41eb	.	CD8B-92	NM_004931	exon1	c.G39A	p.L13L	ACCTGTCAGCTGC	.	6	6	1	0	.	0	0	0	0	0	T	87088950	C	T	87088950	2	4	17	1	0	0	0	0	0	0	0	1	3051	813	29	3		3	CD8B	2	87088950	Silent	SNP	C	TCGA-OR-A5JL-01A-11D-A29I-10	59771586	87088950	156110423	14	3281										
RNF149	284996	hgsc.bcm.edu	37	chr2	101925026	101925026	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0490196078431373	5	0.929330005145667	1.34779750164366	0.970414201183432	1.49294492489759	0.206349206349206	0.913832199546484	0	cacgccgcgagccccgacgcTggcttcgcgccgccgccacg	13	21	0	0	rs11123868	byfrequency	TCGA-OR-A5JL-01A-11D-A29I-10	TCGA-OR-A5JL-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8f0c115d-1ae8-4660-8454-e09ef9150f48	11736376-4bb5-4a2d-b14a-f01a651e41eb	.	RNF149-290	NM_173647	exon1	c.A25G	p.S9G	CGACGCTGGCTTC	.	5	5	0	0	T|0.543;C|0.457	1	0	1	0	0	C	101925026	T	C	101925026	3	2	17	1	0	0	0	0	1	0	0	0	13485	1580	55	4	1205	4	RNF149	2	101925026	Missense_Mutation	SNP	T	TCGA-OR-A5JL-01A-11D-A29I-10	14836076	101925026	141274347	15	3282										
CNTNAP5	129684	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	125521361	125521361	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0490196078431373	5	0.929330005145667	1.34779750164366	0.970414201183432	1.49294492489759	0.206349206349206	0.913832199546484	0	cttggagaattggtcccttgCgttgctatggtgaccgtgag	14	8	0	3	novel		TCGA-OR-A5JL-01A-11D-A29I-10	TCGA-OR-A5JL-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8f0c115d-1ae8-4660-8454-e09ef9150f48	11736376-4bb5-4a2d-b14a-f01a651e41eb	.	CNTNAP5-524	NM_130773	exon15	c.C2344G	p.R782G	CCCTTGCGTTGCT	.	82	11	85	0	.	0	0	0	0	0	G	125521361	C	G	125521361	3	3	17	1	0	0	0	0	1	0	0	0	3656	768	27	2	2402	2	CNTNAP5	2	125521361	Missense_Mutation	SNP	C	TCGA-OR-A5JL-01A-11D-A29I-10	23596335	125521361	117678012	16	3283										
LRIG1	26018	hgsc.bcm.edu	37	chr3	66550762	66550762	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0490196078431373	5	0.929330005145667	1.34779750164366	0.970414201183432	1.49294492489759	0.206349206349206	0.913832199546484	0	cggctccagccgaagcaaaaGcagccagagaaggagaaggc	14	11	0	2	rs1403626	byfrequency	TCGA-OR-A5JL-01A-11D-A29I-10	TCGA-OR-A5JL-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8f0c115d-1ae8-4660-8454-e09ef9150f48	11736376-4bb5-4a2d-b14a-f01a651e41eb	.	LRIG1-230	NM_015541	exon1	c.C70G	p.L24V	GCAAAAGCAGCCA	.	4	4	0	0	G|0.252;C|0.748	0	0	0	0	0	C	66550762	G	C	66550762	3	2	17	1	0	0	0	0	1	0	0	0	8971	971	34	3	3287	3	LRIG1	3	66550762	Missense_Mutation	SNP	G	TCGA-OR-A5JL-01A-11D-A29I-10		66550762	131471668	17	3284										
CRIPAK	285464	hgsc.bcm.edu	37	chr4	1388867	1388867	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0490196078431373	5	0.929330005145667	1.34779750164366	0.970414201183432	1.49294492489759	0.206349206349206	0.913832199546484	0	caacgtggagtgcccgcctgAtcacacgtgcccatgtggag	13	13	1	1	rs76058011	byfrequency	TCGA-OR-A5JL-01A-11D-A29I-10	TCGA-OR-A5JL-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8f0c115d-1ae8-4660-8454-e09ef9150f48	11736376-4bb5-4a2d-b14a-f01a651e41eb	.	CRIPAK-90	NM_175918	exon1	c.A568C	p.I190L	CGCCTGATCACAC	.	106	15	29	0	A|0.994;C|0.006	33	0	33	0	0	C	1388867	A	C	1388867	3	2	17	1	0	0	0	0	1	0	0	0	3883	333	12	5	570	5	CRIPAK	4	1388867	Missense_Mutation	SNP	A	TCGA-OR-A5JL-01A-11D-A29I-10		1388867	189765409	18	3285										
SOD3	6649	hgsc.bcm.edu	37	chr4	24801354	24801354	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0490196078431373	5	0.929330005145667	1.34779750164366	0.970414201183432	1.49294492489759	0.206349206349206	0.913832199546484	0	aggtgcagccgtcggccacgCtggacgccgcgcagccccgg	16	17	0	0	rs8192291	byfrequency	TCGA-OR-A5JL-01A-11D-A29I-10	TCGA-OR-A5JL-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8f0c115d-1ae8-4660-8454-e09ef9150f48	11736376-4bb5-4a2d-b14a-f01a651e41eb	.	SOD3-90	NM_003102	exon2	c.C211T	p.L71L	GCCACGCTGGACG	.	21	18	0	0	C|0.777;T|0.223	2	0	2	0	0	T	24801354	C	T	24801354	2	4	17	1	0	0	0	0	0	0	0	1	14957	796	28	3		3	SOD3	4	24801354	Silent	SNP	C	TCGA-OR-A5JL-01A-11D-A29I-10	23412487	24801354	166352922	19	3286										
TMEM165	55858	hgsc.bcm.edu	37	chr4	56262374	56262374	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0490196078431373	5	0.929330005145667	1.34779750164366	0.970414201183432	1.49294492489759	0.206349206349206	0.913832199546484	0	gggatggcggccgcggctccAgggaacggccgcgcatcggc	19	14	0	0	rs1128141		TCGA-OR-A5JL-01A-11D-A29I-10	TCGA-OR-A5JL-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8f0c115d-1ae8-4660-8454-e09ef9150f48	11736376-4bb5-4a2d-b14a-f01a651e41eb	.	TMEM165-514	NM_018475	exon1	c.A18G	p.P6P	GGCTCCAGGGAAC	.	5	4	0	0	T|0.293;G|0.003	4	2	2	0	0	G	56262374	A	G	56262374	2	3	17	1	0	0	0	0	0	0	0	1	16117	175	7	4		4	TMEM165	4	56262374	Silent	SNP	A	TCGA-OR-A5JL-01A-11D-A29I-10	31461020	56262374	134891902	20	3287										
SHROOM3	57619	hgsc.bcm.edu	37	chr4	77662231	77662231	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0490196078431373	5	0.929330005145667	1.34779750164366	0.970414201183432	1.49294492489759	0.206349206349206	0.913832199546484	0	cctcggcccacgtggggctgCggagccccgaggcgtcggcc	17	17	0	0	rs3733245		TCGA-OR-A5JL-01A-11D-A29I-10	TCGA-OR-A5JL-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8f0c115d-1ae8-4660-8454-e09ef9150f48	11736376-4bb5-4a2d-b14a-f01a651e41eb	.	SHROOM3-93	NM_020859	exon5	c.C2905T	p.R969W	GGGCTGCGGAGCC	.	19	12	0	0	G|0.989;A|0.011	0	0	0	0	0	T	77662231	C	T	77662231	3	4	17	1	0	0	0	0	1	0	0	0	14330	759	27	1	2923	1	SHROOM3	4	77662231	Missense_Mutation	SNP	C	TCGA-OR-A5JL-01A-11D-A29I-10	21399857	77662231	113492045	21	3288										
COQ2	27235	hgsc.bcm.edu	37	chr4	84205872	84205872	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0490196078431373	5	0.929330005145667	1.34779750164366	0.970414201183432	1.49294492489759	0.206349206349206	0.913832199546484	0	cggcagccacgccagtgccaCagcccgcaggccccgcgcga	13	20	0	0	rs6818847	byfrequency	TCGA-OR-A5JL-01A-11D-A29I-10	TCGA-OR-A5JL-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8f0c115d-1ae8-4660-8454-e09ef9150f48	11736376-4bb5-4a2d-b14a-f01a651e41eb	.	COQ2-92	NM_015697	exon1	c.G196T	p.V66L	GTGCCACAGCCCG	.	8	8	0	0	C|0.324;A|0.676	0	0	0	0	0	A	84205872	C	A	84205872	3	1	17	1	0	0	0	0	1	0	0	0	3751	478	17	3	1097	3	COQ2	4	84205872	Missense_Mutation	SNP	C	TCGA-OR-A5JL-01A-11D-A29I-10	6543641	84205872	106948404	22	3289										
RBM46	166863	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr4	155720332	155720332	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0490196078431373	5	0.929330005145667	1.34779750164366	0.970414201183432	1.49294492489759	0.206349206349206	0.913832199546484	0	ttgctaacaaagaagagagcCacccaaaaactctaggcaag	8	10	1	2	novel		TCGA-OR-A5JL-01A-11D-A29I-10	TCGA-OR-A5JL-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8f0c115d-1ae8-4660-8454-e09ef9150f48	11736376-4bb5-4a2d-b14a-f01a651e41eb	.	RBM46-69	NM_144979	exon4	c.C1018T	p.H340Y	GAGAGCCACCCAA	.	232	14	130	0	.	0	0	0	0	0	T	155720332	C	T	155720332	3	4	17	1	0	0	0	0	1	0	0	0	13175	594	21	3	1028	3	RBM46	4	155720332	Missense_Mutation	SNP	C	TCGA-OR-A5JL-01A-11D-A29I-10	71514460	155720332	35433944	23	3290										
FSTL5	56884	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	162380371	162380371	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0490196078431373	5	0.929330005145667	1.34779750164366	0.970414201183432	1.49294492489759	0.206349206349206	0.913832199546484	0	gaaatgtacttacctgtagtGttggtgatgtcttctccaag	10	7	2	1	novel		TCGA-OR-A5JL-01A-11D-A29I-10	TCGA-OR-A5JL-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8f0c115d-1ae8-4660-8454-e09ef9150f48	11736376-4bb5-4a2d-b14a-f01a651e41eb	.	FSTL5-158	NM_020116	exon14	c.C1709T	p.T570I	TGTAGTGTTGGTG	.	119	27	88	0	.	0	0	0	0	0	A	162380371	G	A	162380371	3	1	17	1	0	0	0	0	1	0	0	0	6099	1377	48	3	846	3	FSTL5	4	162380371	Missense_Mutation	SNP	G	TCGA-OR-A5JL-01A-11D-A29I-10	6660039	162380371	28773905	24	3291										
PDCD6	10016	hgsc.bcm.edu	37	chr5	271858	271869	+	In_Frame_Del	DEL	CCGGCCCTGGGG	CCGGCCCTGGGG	-													0.0490196078431373	5	0.929330005145667	1.34779750164366	0.970414201183432	1.49294492489759	0.206349206349206	0.913832199546484	0	ggccgcctactcttaccgccCcggccctggggccggccctg					novel		TCGA-OR-A5JL-01A-11D-A29I-10	TCGA-OR-A5JL-10A-01D-A29L-10	CCGGCCCTGGGG	CCGGCCCTGGGG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8f0c115d-1ae8-4660-8454-e09ef9150f48	11736376-4bb5-4a2d-b14a-f01a651e41eb	.	PDCD6-290	NM_013232	exon1	c.23_34del	p.8_12del	ACCGCCCCGGCCC	.	18	6	2	2	.	0	0	0	0	0	-	271869	CCGGCCCTGGGG	-	271858	7	5	17	1	0	1	0	1	0	0	0	0	11652	623	22	0	25	0	PDCD6	5	271858	In_Frame_Del	DEL	CCGGCCCTGGGG	TCGA-OR-A5JL-01A-11D-A29I-10		271858	180643402	25	3292										
SRD5A1	6715	hgsc.bcm.edu	37	chr5	6633779	6633779	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0490196078431373	5	0.929330005145667	1.34779750164366	0.970414201183432	1.49294492489759	0.206349206349206	0.913832199546484	0	ggctgcgcggtcttcgcgcgCaatcgtcagacgaactcagt	13	13	3	1	rs248793	byfrequency	TCGA-OR-A5JL-01A-11D-A29I-10	TCGA-OR-A5JL-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8f0c115d-1ae8-4660-8454-e09ef9150f48	11736376-4bb5-4a2d-b14a-f01a651e41eb	.	SRD5A1-90	NM_001047	exon1	c.C90G	p.R30R	CGCGCGCAATCGT	.	9	9	0	0	C|0.454;G|0.546	0	0	0	0	0	G	6633779	C	G	6633779	2	3	17	1	0	0	0	0	0	0	0	1	15175	697	25	3		3	SRD5A1	5	6633779	Silent	SNP	C	TCGA-OR-A5JL-01A-11D-A29I-10	6361921	6633779	174281481	26	3293										
MSH3	4437	hgsc.bcm.edu	37	chr5	79950712	79950738	+	In_Frame_Del	DEL	GCGGCCGCAGCGGCCGCAGCGCCCCCA	GCGGCCGCAGCGGCCGCAGCGCCCCCA	-													0.0490196078431373	5	0.929330005145667	1.34779750164366	0.970414201183432	1.49294492489759	0.206349206349206	0.913832199546484	0	ctggcgctgcagcggctgcaGcggccgcagcggccgcagcg					novel		TCGA-OR-A5JL-01A-11D-A29I-10	TCGA-OR-A5JL-10A-01D-A29L-10	GCGGCCGCAGCGGCCGCAGCGCCCCCA	GCGGCCGCAGCGGCCGCAGCGCCCCCA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8f0c115d-1ae8-4660-8454-e09ef9150f48	11736376-4bb5-4a2d-b14a-f01a651e41eb	.	MSH3-661	NM_002439	exon1	c.166_192del	p.56_64del	GCTGCAGCGGCCG	.	42	0	13	0	.	0	0	0	0	0	-	79950738	GCGGCCGCAGCGGCCGCAGCGCCCCCA	-	79950712	7	5	17	1	0	1	0	1	0	0	0	0	9899	971	34	0	168	0	MSH3	5	79950712	In_Frame_Del	DEL	GCGGCCGCAGCGGCCGCAGCGCCCCCA	TCGA-OR-A5JL-01A-11D-A29I-10	73316933	79950712	100964548	27	3294										
GPR98	84059	broad.mit.edu;ucsc.edu	37	chr5	89943537	89943537	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0490196078431373	5	0.929330005145667	1.34779750164366	0.970414201183432	1.49294492489759	0.206349206349206	0.913832199546484	0	tgttaatgaagatggtatccCggaaacagatgagccctttt	10	7	0	4	novel		TCGA-OR-A5JL-01A-11D-A29I-10	TCGA-OR-A5JL-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8f0c115d-1ae8-4660-8454-e09ef9150f48	11736376-4bb5-4a2d-b14a-f01a651e41eb	.	GPR98-103	NM_032119	exon17	c.C3245A	p.P1082Q	GTATCCCGGAAAC	.	124	14	63	1	.	0	0	0	0	0	A	89943537	C	A	89943537	3	1	17	1	0	0	0	0	1	0	0	0	6742	652	23	2	3311	2	GPR98	5	89943537	Missense_Mutation	SNP	C	TCGA-OR-A5JL-01A-11D-A29I-10	9992825	89943537	90971723	28	3295										
SAR1B	51128	bcgsc.ca	37	chr5	133945288	133945288	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0490196078431373	5	0.929330005145667	1.34779750164366	0.970414201183432	1.49294492489759	0.206349206349206	0.913832199546484	0	tcttcttttgactctaacagCctttcgtggtctgcacaatc	6	12	4	1	rs140899111	byfrequency	TCGA-OR-A5JL-01A-11D-A29I-10	TCGA-OR-A5JL-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8f0c115d-1ae8-4660-8454-e09ef9150f48	11736376-4bb5-4a2d-b14a-f01a651e41eb	.	SAR1B-227	NM_001033503	exon6	c.G321A	p.R107R	TAACAGCCTTTCG	.	156	6	126	0	C|0.999;T|0.001	220	220	0	0	0	T	133945288	C	T	133945288	2	4	17	1	0	0	0	0	0	0	0	1	13875	738	26	3		3	SAR1B	5	133945288	Silent	SNP	C	TCGA-OR-A5JL-01A-11D-A29I-10	44001751	133945288	46969972	29	3296										
HIST1H2BK	85236	broad.mit.edu;bcgsc.ca	37	chr6	27114542	27114542	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0490196078431373	5	0.929330005145667	1.34779750164366	0.970414201183432	1.49294492489759	0.206349206349206	0.913832199546484	0	acggctttcttcgagcccttCttgggcgcgggagcggactt	14	12	2	0	novel		TCGA-OR-A5JL-01A-11D-A29I-10	TCGA-OR-A5JL-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8f0c115d-1ae8-4660-8454-e09ef9150f48	11736376-4bb5-4a2d-b14a-f01a651e41eb	.	HIST1H2BK-68	NM_080593	exon1	c.G36A	p.K12K	GCCCTTCTTGGGC	.	333	27	255	1	.	299	244	55	0	0	T	27114542	C	T	27114542	2	4	17	1	0	0	0	0	0	0	0	1	7171	912	32	3		3	HIST1H2BK	6	27114542	Silent	SNP	C	TCGA-OR-A5JL-01A-11D-A29I-10		27114542	144000525	30	3297										
RUNX2	860	hgsc.bcm.edu	37	chr6	45390514	45390514	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0490196078431373	5	0.929330005145667	1.34779750164366	0.970414201183432	1.49294492489759	0.206349206349206	0.913832199546484	0	gcggcggctgcggcggcggcGgcggctgcggcggcggcagc	24	14	0	0	novel		TCGA-OR-A5JL-01A-11D-A29I-10	TCGA-OR-A5JL-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8f0c115d-1ae8-4660-8454-e09ef9150f48	11736376-4bb5-4a2d-b14a-f01a651e41eb	.	RUNX2-417	NM_001024630	exon3	c.G243A	p.A81A	GGCGGCGGCGGCT	.	13	4	1	0	.	0	0	0	0	0	A	45390514	G	A	45390514	2	1	17	1	0	0	0	0	0	0	0	1	13783	1103	39	1		1	RUNX2	6	45390514	Silent	SNP	G	TCGA-OR-A5JL-01A-11D-A29I-10	18275972	45390514	125724553	31	3298										
FAM46A	55603	hgsc.bcm.edu	37	chr6	82461742	82461742	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0490196078431373	5	0.929330005145667	1.34779750164366	0.970414201183432	1.49294492489759	0.206349206349206	0.913832199546484	0	ccgccaccgccgaagtcgccGccgccgaagtcgccgccgcc	12	22	0	0	novel		TCGA-OR-A5JL-01A-11D-A29I-10	TCGA-OR-A5JL-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8f0c115d-1ae8-4660-8454-e09ef9150f48	11736376-4bb5-4a2d-b14a-f01a651e41eb	.	FAM46A-90	NM_017633	exon2	c.C117T	p.G39G	GTCGCCGCCGCCG	.	152	9	51	0	.	1	1	0	0	0	A	82461742	G	A	82461742	2	1	17	1	0	0	0	0	0	0	0	1	5584	1074	38	1		1	FAM46A	6	82461742	Silent	SNP	G	TCGA-OR-A5JL-01A-11D-A29I-10	37071228	82461742	88653325	32	3299										
WDR27	253769	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	170013695	170013695	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0490196078431373	5	0.929330005145667	1.34779750164366	0.970414201183432	1.49294492489759	0.206349206349206	0.913832199546484	0	cagtctcatcccatcgccaaTggccgtggtcaggaaaaggt	11	12	2	0	novel		TCGA-OR-A5JL-01A-11D-A29I-10	TCGA-OR-A5JL-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8f0c115d-1ae8-4660-8454-e09ef9150f48	11736376-4bb5-4a2d-b14a-f01a651e41eb	.	WDR27-69	NM_182552	exon22	c.A2281G	p.I761V	CGCCAATGGCCGT	.	181	64	148	0	.	3	0	3	0	0	C	170013695	T	C	170013695	3	2	17	1	0	0	0	0	1	0	0	0	17322	1464	51	4	308	4	WDR27	6	170013695	Missense_Mutation	SNP	T	TCGA-OR-A5JL-01A-11D-A29I-10	87551953	170013695	1101372	33	3300										
TBP	6908	bcgsc.ca	37	chr6	170871004	170871004	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0490196078431373	5	0.929330005145667	1.34779750164366	0.970414201183432	1.49294492489759	0.206349206349206	0.913832199546484	0	gagcaacaaaggcagcagcaGcaacaacaacagcagcagca	10	12	0	0	novel		TCGA-OR-A5JL-01A-11D-A29I-10	TCGA-OR-A5JL-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8f0c115d-1ae8-4660-8454-e09ef9150f48	11736376-4bb5-4a2d-b14a-f01a651e41eb	.	TBP-91	NM_003194	exon3	c.G180A	p.Q60Q	GCAGCAGCAACAA	.	105	7	94	2	.	13	13	0	0	0	A	170871004	G	A	170871004	2	1	17	1	0	0	0	0	0	0	0	1	15681	962	34	3		3	TBP	6	170871004	Silent	SNP	G	TCGA-OR-A5JL-01A-11D-A29I-10	857309	170871004	244063	34	3301										
MICALL2	79778	hgsc.bcm.edu	37	chr7	1484572	1484572	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0490196078431373	5	0.929330005145667	1.34779750164366	0.970414201183432	1.49294492489759	0.206349206349206	0.913832199546484	0	gccactcggggggctcccccAccctggggtgtggccgggcg	18	16	0	0	rs10435184		TCGA-OR-A5JL-01A-11D-A29I-10	TCGA-OR-A5JL-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8f0c115d-1ae8-4660-8454-e09ef9150f48	11736376-4bb5-4a2d-b14a-f01a651e41eb	.	MICALL2-90	NM_182924	exon6	c.T1134C	p.G378G	TCCCCCACCCTGG	.	5	5	0	0	A|0.009;G|0.991	5	0	5	0	0	G	1484572	A	G	1484572	2	3	17	1	0	0	0	0	0	0	0	1	9602	146	6	4		4	MICALL2	7	1484572	Silent	SNP	A	TCGA-OR-A5JL-01A-11D-A29I-10		1484572	157654091	35	3302										
USP42	84132	hgsc.bcm.edu	37	chr7	6193521	6193521	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0490196078431373	5	0.929330005145667	1.34779750164366	0.970414201183432	1.49294492489759	0.206349206349206	0.913832199546484	0	caagaaggctccgccgccccGcgatcccggcacccccgcta	10	21	0	1	rs61729726	byfrequency	TCGA-OR-A5JL-01A-11D-A29I-10	TCGA-OR-A5JL-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8f0c115d-1ae8-4660-8454-e09ef9150f48	11736376-4bb5-4a2d-b14a-f01a651e41eb	.	USP42-659	NM_032172	exon15	c.G2336C	p.R779P	CGCCCCGCGATCC	.	15	6	0	0	G|0.456;C|0.544	3	2	1	0	0	C	6193521	G	C	6193521	3	2	17	1	0	0	0	0	1	0	0	0	17111	1087	38	2		2	USP42	7	6193521	Missense_Mutation	SNP	G	TCGA-OR-A5JL-01A-11D-A29I-10	4708949	6193521	152945142	36	3303										
GARS	2617	hgsc.bcm.edu	37	chr7	30634661	30634661	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0490196078431373	5	0.929330005145667	1.34779750164366	0.970414201183432	1.49294492489759	0.206349206349206	0.913832199546484	0	ccctcagcgcggcctcctgcCccccgatctccttgcccgcc	8	24	2	0	rs1049402	byfrequency	TCGA-OR-A5JL-01A-11D-A29I-10	TCGA-OR-A5JL-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8f0c115d-1ae8-4660-8454-e09ef9150f48	11736376-4bb5-4a2d-b14a-f01a651e41eb	.	GARS-91	NM_002047	exon1	c.C124G	p.P42A	TCCTGCCCCCCGA	.	13	13	0	0	C|0.329;G|0.671	22	0	22	0	0	G	30634661	C	G	30634661	3	3	17	1	0	0	0	0	1	0	0	0	6262	623	22	3	126	3	GARS	7	30634661	Missense_Mutation	SNP	C	TCGA-OR-A5JL-01A-11D-A29I-10	24441140	30634661	128504002	37	3304										
GLI3	2737	hgsc.bcm.edu	37	chr7	42005678	42005678	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0490196078431373	5	0.929330005145667	1.34779750164366	0.970414201183432	1.49294492489759	0.206349206349206	0.913832199546484	0	ccctcctcacgccgtggcccGgcgcatcgtgcggctgcagg	14	18	1	0	rs929387	byfrequency	TCGA-OR-A5JL-01A-11D-A29I-10	TCGA-OR-A5JL-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8f0c115d-1ae8-4660-8454-e09ef9150f48	11736376-4bb5-4a2d-b14a-f01a651e41eb	.	GLI3-1149	NM_000168	exon15	c.C2993T	p.P998L	TGGCCCGGCGCAT	.	6	6	0	0	G|0.565;A|0.435	2	0	2	0	0	A	42005678	G	A	42005678	3	1	17	1	0	0	0	0	1	0	0	0	6459	1116	39	1	1753	1	GLI3	7	42005678	Missense_Mutation	SNP	G	TCGA-OR-A5JL-01A-11D-A29I-10	11371017	42005678	117132985	38	3305										
SSPO	23145	hgsc.bcm.edu	37	chr7	149489784	149489784	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0490196078431373	5	0.929330005145667	1.34779750164366	0.970414201183432	1.49294492489759	0.206349206349206	0.913832199546484	0	ccgcccctccggccgaggtcGccagtgccgtggcatccacc	12	20	0	0	novel		TCGA-OR-A5JL-01A-11D-A29I-10	TCGA-OR-A5JL-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8f0c115d-1ae8-4660-8454-e09ef9150f48	11736376-4bb5-4a2d-b14a-f01a651e41eb	.	.	NM_198455	exon38	c.G5840T	p.R1947L	GAGGTCGCCAGTG	.	71	5	30	0	.	0	0	0	0	0	T	149489784	G	T	149489784	3	4	17	1	0	0	0	0	1	0	0	0	15226	1087	38	2	5986	2	SSPO	7	149489784	Missense_Mutation	SNP	G	TCGA-OR-A5JL-01A-11D-A29I-10	107484106	149489784	9648879	39	3306										
DPP6	1804	hgsc.bcm.edu	37	chr7	153750019	153750019	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0490196078431373	5	0.929330005145667	1.34779750164366	0.970414201183432	1.49294492489759	0.206349206349206	0.913832199546484	0	gggcccgaggaggacggcggCgcaggagccaagcccctcgg	19	14	0	0	novel		TCGA-OR-A5JL-01A-11D-A29I-10	TCGA-OR-A5JL-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8f0c115d-1ae8-4660-8454-e09ef9150f48	11736376-4bb5-4a2d-b14a-f01a651e41eb	.	DPP6-652	NM_130797	exon1	c.C114T	p.G38G	CGGCGGCGCAGGA	.	17	12	0	0	.	0	0	0	0	0	T	153750019	C	T	153750019	2	4	17	1	0	0	0	0	0	0	0	1	4741	755	27	1		1	DPP6	7	153750019	Silent	SNP	C	TCGA-OR-A5JL-01A-11D-A29I-10	4260235	153750019	5388644	40	3307										
FAM135B	51059	bcgsc.ca	37	chr8	139165272	139165272	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0490196078431373	5	0.929330005145667	1.34779750164366	0.970414201183432	1.49294492489759	0.206349206349206	0.913832199546484	0	tgtgtggccacattctcaccTggctctggacaccttataac	8	13	2	0	rs7835712	byfrequency	TCGA-OR-A5JL-01A-11D-A29I-10	TCGA-OR-A5JL-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8f0c115d-1ae8-4660-8454-e09ef9150f48	11736376-4bb5-4a2d-b14a-f01a651e41eb	.	FAM135B-31	NM_015912	exon13	c.A1446G	p.P482P	CTCACCTGGCTCT	.	146	8	180	1	T|0.330;C|0.670	0	0	0	0	0	C	139165272	T	C	139165272	2	2	17	1	0	0	0	0	0	0	0	1	5465	1567	55	4		4	FAM135B	8	139165272	Silent	SNP	T	TCGA-OR-A5JL-01A-11D-A29I-10		139165272	7198750	41	3308			1	11		2	2	18	T		5.601211e-05
FAM135B	51059	bcgsc.ca	37	chr8	139165289	139165289	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0490196078431373	5	0.929330005145667	1.34779750164366	0.970414201183432	1.49294492489759	0.206349206349206	0.913832199546484	0	acctggctctggacaccttaTaacttcttcatcagaatcca	5	13	4	1	rs7835830	byfrequency	TCGA-OR-A5JL-01A-11D-A29I-10	TCGA-OR-A5JL-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8f0c115d-1ae8-4660-8454-e09ef9150f48	11736376-4bb5-4a2d-b14a-f01a651e41eb	.	FAM135B-31	NM_015912	exon13	c.A1429G	p.I477V	ACCTTATAACTTC	.	129	7	163	1	T|0.289;C|0.711	0	0	0	0	0	C	139165289	T	C	139165289	3	2	17	1	0	0	0	0	1	0	0	0	5465	1406	49	4	2823	4	FAM135B	8	139165289	Missense_Mutation	SNP	T	TCGA-OR-A5JL-01A-11D-A29I-10	17	139165289	7198733	42	3309			1	11		2	2	18	T		5.601211e-05
GPR20	2843	broad.mit.edu;bcgsc.ca	37	chr8	142367099	142367099	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0490196078431373	5	0.929330005145667	1.34779750164366	0.970414201183432	1.49294492489759	0.206349206349206	0.913832199546484	0	gtgctggccgaagaggcctcGgacggtggcctggaagccac	17	12	0	1	novel		TCGA-OR-A5JL-01A-11D-A29I-10	TCGA-OR-A5JL-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8f0c115d-1ae8-4660-8454-e09ef9150f48	11736376-4bb5-4a2d-b14a-f01a651e41eb	.	GPR20-91	NM_005293	exon2	c.C925T	p.R309X	GGCCTCGGACGGT	.	146	7	111	0	.	0	0	0	0	0	A	142367099	G	A	142367099	4	1	17	1	0	0	0	0	0	1	0	0	6700	1124	39	1	155	1	GPR20	8	142367099	Nonsense_Mutation	SNP	G	TCGA-OR-A5JL-01A-11D-A29I-10	3201810	142367099	3996923	43	3310										
ZNF696	79943	hgsc.bcm.edu	37	chr8	144378868	144378868	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0490196078431373	5	0.929330005145667	1.34779750164366	0.970414201183432	1.49294492489759	0.206349206349206	0.913832199546484	0	ggcttcttccggcaccagcgActccacacgggcgagaagcc	12	16	1	1	rs7386259	byfrequency	TCGA-OR-A5JL-01A-11D-A29I-10	TCGA-OR-A5JL-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8f0c115d-1ae8-4660-8454-e09ef9150f48	11736376-4bb5-4a2d-b14a-f01a651e41eb	.	ZNF696-90	NM_030895	exon3	c.A1023G	p.R341R	CCAGCGACTCCAC	.	10	10	0	0	A|0.118;G|0.882	1	0	1	0	0	G	144378868	A	G	144378868	2	3	17	1	0	0	0	0	0	0	0	1	18136	262	10	4		4	ZNF696	8	144378868	Silent	SNP	A	TCGA-OR-A5JL-01A-11D-A29I-10	2011769	144378868	1985154	44	3311										
PLEC	5339	hgsc.bcm.edu	37	chr8	144997783	144997783	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0490196078431373	5	0.929330005145667	1.34779750164366	0.970414201183432	1.49294492489759	0.206349206349206	0.913832199546484	0	ccacctgccgccgggactgcGccgcctcacgctccgcctgc	11	22	1	0	rs74772299	byfrequency	TCGA-OR-A5JL-01A-11D-A29I-10	TCGA-OR-A5JL-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8f0c115d-1ae8-4660-8454-e09ef9150f48	11736376-4bb5-4a2d-b14a-f01a651e41eb	.	PLEC-141	NM_201380	exon31	c.C6725T	p.A2242V	GACTGCGCCGCCT	.	4	4	0	0	G|0.960;A|0.040	3	2	1	0	0	A	144997783	G	A	144997783	3	1	17	1	0	0	0	0	1	0	0	0	12081	1087	38	1	7337	1	PLEC	8	144997783	Missense_Mutation	SNP	G	TCGA-OR-A5JL-01A-11D-A29I-10	618915	144997783	1366239	45	3312			2	12	5832494	3	3	4002	N	G_C_A	8.611417e-05
PLEC	5339	hgsc.bcm.edu	37	chr8	144998514	144998514	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0490196078431373	5	0.929330005145667	1.34779750164366	0.970414201183432	1.49294492489759	0.206349206349206	0.913832199546484	0	cgccgcaggcgctcgttctcCgcctccttctccttgagcgc	10	19	2	1	rs75586449	byfrequency	TCGA-OR-A5JL-01A-11D-A29I-10	TCGA-OR-A5JL-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8f0c115d-1ae8-4660-8454-e09ef9150f48	11736376-4bb5-4a2d-b14a-f01a651e41eb	.	PLEC-141	NM_201380	exon31	c.G5994A	p.A1998A	GTTCTCCGCCTCC	.	19	14	0	0	C|0.961;T|0.039	1	0	1	0	0	T	144998514	C	T	144998514	2	4	17	1	0	0	0	0	0	0	0	1	12081	639	23	1		1	PLEC	8	144998514	Silent	SNP	C	TCGA-OR-A5JL-01A-11D-A29I-10	731	144998514	1365508	46	3313			2	12	5832494	3	3	4002	N	G_C_A	8.611417e-05
PLEC	5339	hgsc.bcm.edu	37	chr8	145001784	145001784	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0490196078431373	5	0.929330005145667	1.34779750164366	0.970414201183432	1.49294492489759	0.206349206349206	0.913832199546484	0	agcctgccagcgctcaagcaActgggcgacccgctcccgcc	11	19	1	0	rs3135109	byfrequency	TCGA-OR-A5JL-01A-11D-A29I-10	TCGA-OR-A5JL-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8f0c115d-1ae8-4660-8454-e09ef9150f48	11736376-4bb5-4a2d-b14a-f01a651e41eb	.	PLEC-141	NM_201380	exon27	c.T3961C	p.L1321L	CAAGCAACTGGGC	.	26	4	0	0	G|0.246;A|0.754	0	0	0	0	0	G	145001784	A	G	145001784	2	3	17	1	0	0	0	0	0	0	0	1	12081	40	2	4		4	PLEC	8	145001784	Silent	SNP	A	TCGA-OR-A5JL-01A-11D-A29I-10	3270	145001784	1362238	47	3314			2	12	5832494	3	3	4002	N	G_C_A	8.611417e-05
NIPSNAP3A	25934	bcgsc.ca	37	chr9	107515214	107515214	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0490196078431373	5	0.929330005145667	1.34779750164366	0.970414201183432	1.49294492489759	0.206349206349206	0.913832199546484	0	tgctcatcgaactgaagttcGgaaagccttggccaaagata	10	9	1	2	rs2274870	byfrequency	TCGA-OR-A5JL-01A-11D-A29I-10	TCGA-OR-A5JL-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8f0c115d-1ae8-4660-8454-e09ef9150f48	11736376-4bb5-4a2d-b14a-f01a651e41eb	.	NIPSNAP3A-90	NM_015469	exon3	c.G299A	p.R100Q	AAGTTCGGAAAGC	.	133	5	167	0	G|0.331;A|0.669	24	24	0	0	0	A	107515214	G	A	107515214	3	1	17	1	0	0	0	0	1	0	0	0	10459	1116	39	1	309	1	NIPSNAP3A	9	107515214	Missense_Mutation	SNP	G	TCGA-OR-A5JL-01A-11D-A29I-10		107515214	33698217	48	3315										
COL27A1	85301	bcgsc.ca	37	chr9	116967405	116967405	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0490196078431373	5	0.929330005145667	1.34779750164366	0.970414201183432	1.49294492489759	0.206349206349206	0.913832199546484	0	cacaagggctatcctggaccGgcagggcaccccggagaaca	13	14	0	1	rs13290696	byfrequency	TCGA-OR-A5JL-01A-11D-A29I-10	TCGA-OR-A5JL-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8f0c115d-1ae8-4660-8454-e09ef9150f48	11736376-4bb5-4a2d-b14a-f01a651e41eb	.	COL27A1-94	NM_032888	exon8	c.G2148T	p.P716P	TGGACCGGCAGGG	.	50	4	68	0	G|0.931;T|0.069	1	1	0	0	0	T	116967405	G	T	116967405	2	4	17	1	0	0	0	0	0	0	0	1	3691	1103	39	2		2	COL27A1	9	116967405	Silent	SNP	G	TCGA-OR-A5JL-01A-11D-A29I-10	9452191	116967405	24246026	49	3316										
LMX1B	4010	broad.mit.edu	37	chr9	129376842	129376843	+	Frame_Shift_Ins	INS	-	-	C													0.0490196078431373	5	0.929330005145667	1.34779750164366	0.970414201183432	1.49294492489759	0.206349206349206	0.913832199546484	0	agcacgccctgcgccccgggINScccgccactctgggggtgct					novel		TCGA-OR-A5JL-01A-11D-A29I-10	TCGA-OR-A5JL-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8f0c115d-1ae8-4660-8454-e09ef9150f48	11736376-4bb5-4a2d-b14a-f01a651e41eb	.	LMX1B-90	NM_002316	exon1	c.114_115insC	p.G38fs	CCCCGGGCCCGCC	.	119	8	59	0	.	0	0	0	0	0	C	129376843	-	C	129376842	7	5	17	1	0	1	1	0	0	0	0	0	8886	1190	42	0	116	0	LMX1B	9	129376842	Frame_Shift_Ins	INS	-	TCGA-OR-A5JL-01A-11D-A29I-10	12409437	129376842	11836589	50	3317										
CACNA1B	774	hgsc.bcm.edu	37	chr9	140917779	140917779	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0490196078431373	5	0.929330005145667	1.34779750164366	0.970414201183432	1.49294492489759	0.206349206349206	0.913832199546484	0	gcgacaaggacaagacccccGcggcgggggaccaggaccga	16	14	0	1	rs7873074	byfrequency	TCGA-OR-A5JL-01A-11D-A29I-10	TCGA-OR-A5JL-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8f0c115d-1ae8-4660-8454-e09ef9150f48	11736376-4bb5-4a2d-b14a-f01a651e41eb	.	CACNA1B-138	NM_001243812	exon19	c.G2584T	p.A862S	ACCCCCGCGGCGG	.	6	6	0	0	G|0.601;T|0.399	0	0	0	0	0	T	140917779	G	T	140917779	3	4	17	1	0	0	0	0	1	0	0	0	2545	1087	38	2	2658	2	CACNA1B	9	140917779	Missense_Mutation	SNP	G	TCGA-OR-A5JL-01A-11D-A29I-10	11540937	140917779	295652	51	3318										
KNDC1	85442	hgsc.bcm.edu	37	chr10	135012429	135012430	+	Missense_Mutation	DNP	TT	TT	AC													0.0490196078431373	5	0.929330005145667	1.34779750164366	0.970414201183432	1.49294492489759	0.206349206349206	0.913832199546484	0	tgagccgatcccacctggagTtgcttccgggggcctcaggc					novel		TCGA-OR-A5JL-01A-11D-A29I-10	TCGA-OR-A5JL-10A-01D-A29L-10	TT	TT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8f0c115d-1ae8-4660-8454-e09ef9150f48	11736376-4bb5-4a2d-b14a-f01a651e41eb	.	KNDC1-229	NM_152643	exon14	c.T2418C	p.V806D	TGGAGTTGCTTCC	.	7	0	0	0	T|0.470;C|0.530	0	0	0	0	0	AC	135012430	TT	AC	135012429	3	1	17	1	0	0	0	0	1	0	0	0	8447	1725	60	5	2471	5	KNDC1	10	135012429	Missense_Mutation	DNP	TT	TCGA-OR-A5JL-01A-11D-A29I-10		135012429	522318	52	3319										
MUC2	4583	hgsc.bcm.edu	37	chr11	1093255	1093255	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0490196078431373	5	0.929330005145667	1.34779750164366	0.970414201183432	1.49294492489759	0.206349206349206	0.913832199546484	0	ccccaaccccaacacccaccGgcacacagaccccaacatcg	4	23	0	1	novel		TCGA-OR-A5JL-01A-11D-A29I-10	TCGA-OR-A5JL-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8f0c115d-1ae8-4660-8454-e09ef9150f48	11736376-4bb5-4a2d-b14a-f01a651e41eb	.	MUC2-90	NM_002457	exon30	c.G5074A	p.G1692S	CCCACCGGCACAC	.	75	5	97	0	.	0	0	0	0	0	A	1093255	G	A	1093255	3	1	17	1	0	0	0	0	1	0	0	0	10003	1116	39	1	5192	1	MUC2	11	1093255	Missense_Mutation	SNP	G	TCGA-OR-A5JL-01A-11D-A29I-10		1093255	133913261	53	3320										
WT1	7490	broad.mit.edu	37	chr11	32417887	32417887	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0490196078431373	5	0.929330005145667	1.34779750164366	0.970414201183432	1.49294492489759	0.206349206349206	0.913832199546484	0	gtaagcacacatgaaggggcGtttctcactggtctcagatg	12	9	2	2	novel		TCGA-OR-A5JL-01A-11D-A29I-10	TCGA-OR-A5JL-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8f0c115d-1ae8-4660-8454-e09ef9150f48	11736376-4bb5-4a2d-b14a-f01a651e41eb	.	WT1-6891	NM_024424	exon7	c.C1165T	p.R389C	AGGGGCGTTTCTC	.	71	3	120	0	.	0	0	0	0	0	A	32417887	G	A	32417887	3	1	17	1	0	0	0	0	1	0	0	0	17446	1145	40	1	404	1	WT1	11	32417887	Missense_Mutation	SNP	G	TCGA-OR-A5JL-01A-11D-A29I-10	31324632	32417887	102588629	54	3321										
CHRM1	1128	bcgsc.ca	37	chr11	62677220	62677220	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0490196078431373	5	0.929330005145667	1.34779750164366	0.970414201183432	1.49294492489759	0.206349206349206	0.913832199546484	0	cgggagggagtgcggtgcacGgagccagggcgcttggggat	22	8	0	0	rs2067480	byfrequency	TCGA-OR-A5JL-01A-11D-A29I-10	TCGA-OR-A5JL-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8f0c115d-1ae8-4660-8454-e09ef9150f48	11736376-4bb5-4a2d-b14a-f01a651e41eb	.	CHRM1-90	NM_000738	exon2	c.C1353T	p.S451S	GTGCACGGAGCCA	.	82	4	127	0	G|0.931;A|0.069	0	0	0	0	0	A	62677220	G	A	62677220	2	1	17	1	0	0	0	0	0	0	0	1	3382	1103	39	1		1	CHRM1	11	62677220	Silent	SNP	G	TCGA-OR-A5JL-01A-11D-A29I-10	30259333	62677220	72329296	55	3322										
ZNHIT2	741	hgsc.bcm.edu	37	chr11	64884742	64884742	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0490196078431373	5	0.929330005145667	1.34779750164366	0.970414201183432	1.49294492489759	0.206349206349206	0.913832199546484	0	gctccgcggttccaccaccaCggccgccatggaggcagcag	13	17	0	0	novel		TCGA-OR-A5JL-01A-11D-A29I-10	TCGA-OR-A5JL-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8f0c115d-1ae8-4660-8454-e09ef9150f48	11736376-4bb5-4a2d-b14a-f01a651e41eb	.	ZNHIT2-153	NM_014205	exon1	c.G384C	p.P128P	CCACCACGGCCGC	.	5	5	1	0	.	23	0	23	0	0	G	64884742	C	G	64884742	2	3	17	1	0	0	0	0	0	0	0	1	18244	523	19	2		2	ZNHIT2	11	64884742	Silent	SNP	C	TCGA-OR-A5JL-01A-11D-A29I-10	2207522	64884742	70121774	56	3323										
ROBO3	64221	broad.mit.edu	37	chr11	124740559	124740559	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0490196078431373	5	0.929330005145667	1.34779750164366	0.970414201183432	1.49294492489759	0.206349206349206	0.913832199546484	0	gagtgccgaagatgagggaaCgtacacctgtgtggcggaga	17	7	0	3	rs151168595		TCGA-OR-A5JL-01A-11D-A29I-10	TCGA-OR-A5JL-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8f0c115d-1ae8-4660-8454-e09ef9150f48	11736376-4bb5-4a2d-b14a-f01a651e41eb	.	ROBO3-113	NM_022370	exon6	c.C968T	p.T323M	AGGGAACGTACAC	.	245	8	239	1	C|0.998;T|0.002	0	0	0	0	0	T	124740559	C	T	124740559	3	4	17	1	0	0	0	0	1	0	0	0	13550	536	19	1	990	1	ROBO3	11	124740559	Missense_Mutation	SNP	C	TCGA-OR-A5JL-01A-11D-A29I-10	59855817	124740559	10265957	57	3324										
APOLD1	81575	hgsc.bcm.edu	37	chr12	12939892	12939892	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0490196078431373	5	0.929330005145667	1.34779750164366	0.970414201183432	1.49294492489759	0.206349206349206	0.913832199546484	0	gcatgggcccgacgcgctgcGgcgcttccagggactgctgc	16	15	0	0	rs4763876		TCGA-OR-A5JL-01A-11D-A29I-10	TCGA-OR-A5JL-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8f0c115d-1ae8-4660-8454-e09ef9150f48	11736376-4bb5-4a2d-b14a-f01a651e41eb	.	APOLD1-91	NM_001130415	exon2	c.G146A	p.R49Q	CGCTGCGGCGCTT	.	10	6	0	0	G|0.943;A|0.057	1	0	1	0	0	A	12939892	G	A	12939892	3	1	17	1	0	0	0	0	1	0	0	0	811	1116	39	1	159	1	APOLD1	12	12939892	Missense_Mutation	SNP	G	TCGA-OR-A5JL-01A-11D-A29I-10		12939892	120912003	58	3325										
MARCH9	92979	hgsc.bcm.edu	37	chr12	58149446	58149446	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0490196078431373	5	0.929330005145667	1.34779750164366	0.970414201183432	1.49294492489759	0.206349206349206	0.913832199546484	0	ggctgggcgcccttcgctggCtgctccacccgggacggcga	16	16	0	0	rs1689582		TCGA-OR-A5JL-01A-11D-A29I-10	TCGA-OR-A5JL-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8f0c115d-1ae8-4660-8454-e09ef9150f48	11736376-4bb5-4a2d-b14a-f01a651e41eb	.	MARCH9-492	NM_138396	exon1	c.C135T	p.G45G	CGCTGGCTGCTCC	.	4	4	0	0	T|0.004;G|0.064	0	0	0	0	0	T	58149446	C	T	58149446	2	4	17	1	0	0	0	0	0	0	0	1	9336	784	28	3		3	MARCH9	12	58149446	Silent	SNP	C	TCGA-OR-A5JL-01A-11D-A29I-10	45209554	58149446	75702449	59	3326										
AMDHD1	144193	hgsc.bcm.edu	37	chr12	96337183	96337183	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0490196078431373	5	0.929330005145667	1.34779750164366	0.970414201183432	1.49294492489759	0.206349206349206	0.913832199546484	0	cggcgcgaggcgacatggcaAgcggccacagcctcctgctg	15	15	0	0	rs7955450	byfrequency	TCGA-OR-A5JL-01A-11D-A29I-10	TCGA-OR-A5JL-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8f0c115d-1ae8-4660-8454-e09ef9150f48	11736376-4bb5-4a2d-b14a-f01a651e41eb	.	AMDHD1-90	NM_152435	exon1	c.A7G	p.S3G	ATGGCAAGCGGCC	.	12	12	0	0	A|0.273;G|0.727	1	0	1	0	0	G	96337183	A	G	96337183	3	3	17	1	0	0	0	0	1	0	0	0	567	72	3	4	9	4	AMDHD1	12	96337183	Missense_Mutation	SNP	A	TCGA-OR-A5JL-01A-11D-A29I-10	38187737	96337183	37514712	60	3327										
BTBD11	121551	hgsc.bcm.edu	37	chr12	107713511	107713511	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0490196078431373	5	0.929330005145667	1.34779750164366	0.970414201183432	1.49294492489759	0.206349206349206	0.913832199546484	0	ccggagctgcagtggccctgGgtcaggctcgggctccggcc	17	15	1	0	rs961498	byfrequency	TCGA-OR-A5JL-01A-11D-A29I-10	TCGA-OR-A5JL-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8f0c115d-1ae8-4660-8454-e09ef9150f48	11736376-4bb5-4a2d-b14a-f01a651e41eb	.	BTBD11-93	NM_001018072	exon1	c.G794C	p.G265A	GCCCTGGGTCAGG	.	8	8	0	0	G|0.588;C|0.412	0	0	0	0	0	C	107713511	G	C	107713511	3	2	17	1	0	0	0	0	1	0	0	0	1542	1232	43	3	796	3	BTBD11	12	107713511	Missense_Mutation	SNP	G	TCGA-OR-A5JL-01A-11D-A29I-10	11376328	107713511	26138384	61	3328										
ACACB	32	bcgsc.ca	37	chr12	109673448	109673448	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0490196078431373	5	0.929330005145667	1.34779750164366	0.970414201183432	1.49294492489759	0.206349206349206	0.913832199546484	0	tttcacattcagagcaagagAtgaggtatggccaaaagtaa	10	6	2	3	rs113524436	byfrequency	TCGA-OR-A5JL-01A-11D-A29I-10	TCGA-OR-A5JL-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8f0c115d-1ae8-4660-8454-e09ef9150f48	11736376-4bb5-4a2d-b14a-f01a651e41eb	.	ACACB-98	NM_001093	exon32	c.A4442T	p.D1481V	CAAGAGATGAGGT	.	52	4	58	0	A|0.992;T|0.008	0	0	0	0	0	T	109673448	A	T	109673448	3	4	17	1	0	0	0	0	1	0	0	0	107	333	12	5	4568	5	ACACB	12	109673448	Missense_Mutation	SNP	A	TCGA-OR-A5JL-01A-11D-A29I-10	1959937	109673448	24178447	62	3329										
DNAJC15	29103	bcgsc.ca	37	chr13	43597865	43597865	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0490196078431373	5	0.929330005145667	1.34779750164366	0.970414201183432	1.49294492489759	0.206349206349206	0.913832199546484	0	acgccgacgtcgaccagcagAgactggtgagtcctgccagc	13	14	0	2	rs12015	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-OR-A5JL-01A-11D-A29I-10	TCGA-OR-A5JL-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8f0c115d-1ae8-4660-8454-e09ef9150f48	11736376-4bb5-4a2d-b14a-f01a651e41eb	.	DNAJC15-650	NM_013238	exon1	c.A103G	p.R35G	CAGCAGAGACTGG	.	138	5	123	0	A|0.726;G|0.274	0	0	0	0	0	G	43597865	A	G	43597865	3	3	17	1	0	0	0	0	1	0	0	0	4645	296	11	4	105	4	DNAJC15	13	43597865	Missense_Mutation	SNP	A	TCGA-OR-A5JL-01A-11D-A29I-10		43597865	71572013	63	3330										
IRS2	8660	hgsc.bcm.edu	37	chr13	110435728	110435728	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0490196078431373	5	0.929330005145667	1.34779750164366	0.970414201183432	1.49294492489759	0.206349206349206	0.913832199546484	0	agcccctccagggacaggcgCgtgggcctcaccgcccggcc	14	19	1	0	rs75172981		TCGA-OR-A5JL-01A-11D-A29I-10	TCGA-OR-A5JL-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8f0c115d-1ae8-4660-8454-e09ef9150f48	11736376-4bb5-4a2d-b14a-f01a651e41eb	.	IRS2-1334	NM_003749	exon1	c.G2673C	p.T891T	CAGGCGCGTGGGC	.	8	5	0	0	C|0.970;G|0.030	1	0	1	0	0	G	110435728	C	G	110435728	2	3	17	1	0	0	0	0	0	0	0	1	7862	755	27	2		2	IRS2	13	110435728	Silent	SNP	C	TCGA-OR-A5JL-01A-11D-A29I-10	66837863	110435728	4734150	64	3331										
CPNE6	9362	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr14	24546115	24546115	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0490196078431373	5	0.929330005145667	1.34779750164366	0.970414201183432	1.49294492489759	0.206349206349206	0.913832199546484	0	aggggtcatcgcctcctaccGtcgttgcctgccccagatcc	10	17	1	1	rs201909603		TCGA-OR-A5JL-01A-11D-A29I-10	TCGA-OR-A5JL-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8f0c115d-1ae8-4660-8454-e09ef9150f48	11736376-4bb5-4a2d-b14a-f01a651e41eb	.	CPNE6-93	NM_006032	exon14	c.G1193A	p.R398H	CCTACCGTCGTTG	.	98	8	69	0	G|0.999;A|0.001	0	0	0	0	0	A	24546115	G	A	24546115	3	1	17	1	0	0	0	0	1	0	0	0	3822	1145	40	1	1243	1	CPNE6	14	24546115	Missense_Mutation	SNP	G	TCGA-OR-A5JL-01A-11D-A29I-10		24546115	82803425	65	3332										
TGM1	7051	bcgsc.ca	37	chr14	24729687	24729687	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0490196078431373	5	0.929330005145667	1.34779750164366	0.970414201183432	1.49294492489759	0.206349206349206	0.913832199546484	0	gggttgaagaggatgtagatCtcattgcgggggtcaaaggg	18	4	2	3	rs35755034	byfrequency	TCGA-OR-A5JL-01A-11D-A29I-10	TCGA-OR-A5JL-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8f0c115d-1ae8-4660-8454-e09ef9150f48	11736376-4bb5-4a2d-b14a-f01a651e41eb	.	TGM1-91	NM_000359	exon4	c.G726A	p.E242E	GTAGATCTCATTG	.	162	6	101	0	C|0.952;T|0.048	0	0	0	0	0	T	24729687	C	T	24729687	2	4	17	1	0	0	0	0	0	0	0	1	15866	912	32	3		3	TGM1	14	24729687	Silent	SNP	C	TCGA-OR-A5JL-01A-11D-A29I-10	183572	24729687	82619853	66	3333										
HHIPL1	84439	hgsc.bcm.edu	37	chr14	100141689	100141689	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0490196078431373	5	0.929330005145667	1.34779750164366	0.970414201183432	1.49294492489759	0.206349206349206	0.913832199546484	0	cgggcgcgtggaggtgttcgTgggcggacgctggggcaccg	22	10	0	0	rs7158073	byfrequency	TCGA-OR-A5JL-01A-11D-A29I-10	TCGA-OR-A5JL-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8f0c115d-1ae8-4660-8454-e09ef9150f48	11736376-4bb5-4a2d-b14a-f01a651e41eb	.	HHIPL1-70	NM_001127258	exon9	c.T2075C	p.V692A	TGTTCGTGGGCGG	.	41	13	4	0	T|0.478;C|0.522	0	0	0	0	0	C	100141689	T	C	100141689	3	2	17	1	0	0	0	0	1	0	0	0	7114	1696	59	4	2210	4	HHIPL1	14	100141689	Missense_Mutation	SNP	T	TCGA-OR-A5JL-01A-11D-A29I-10	75412002	100141689	7207851	67	3334										
CKB	1152	hgsc.bcm.edu	37	chr14	103988180	103988180	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0490196078431373	5	0.929330005145667	1.34779750164366	0.970414201183432	1.49294492489759	0.206349206349206	0.913832199546484	0	accgcgagcttctcgatggcGcggcgctccccgcggctgca	14	17	1	0	rs1136165	byfrequency	TCGA-OR-A5JL-01A-11D-A29I-10	TCGA-OR-A5JL-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8f0c115d-1ae8-4660-8454-e09ef9150f48	11736376-4bb5-4a2d-b14a-f01a651e41eb	.	CKB-115	NM_001823	exon4	c.C456A	p.R152R	GATGGCGCGGCGC	.	9	9	0	0	G|0.327;T|0.673	51	0	51	0	0	T	103988180	G	T	103988180	2	4	17	1	0	0	0	0	0	0	0	1	3452	1074	38	2		2	CKB	14	103988180	Silent	SNP	G	TCGA-OR-A5JL-01A-11D-A29I-10	3846491	103988180	3361360	68	3335										
C14orf180	400258	hgsc.bcm.edu	37	chr14	105054934	105054934	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0490196078431373	5	0.929330005145667	1.34779750164366	0.970414201183432	1.49294492489759	0.206349206349206	0.913832199546484	0	gtgcccggccggcccaggccAcacggcggctccctgctcct	13	20	0	0	rs12880814	byfrequency	TCGA-OR-A5JL-01A-11D-A29I-10	TCGA-OR-A5JL-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8f0c115d-1ae8-4660-8454-e09ef9150f48	11736376-4bb5-4a2d-b14a-f01a651e41eb	.	C14orf180-492	NM_001008404	exon5	c.A297G	p.P99P	CAGGCCACACGGC	.	12	12	0	0	A|0.615;G|0.385	0	0	0	0	0	G	105054934	A	G	105054934	2	3	17	1	0	0	0	0	0	0	0	1	1767	146	6	4		4	C14orf180	14	105054934	Silent	SNP	A	TCGA-OR-A5JL-01A-11D-A29I-10	1066754	105054934	2294606	69	3336										
C14orf180	400258	hgsc.bcm.edu	37	chr14	105055119	105055127	+	Frame_Shift_Del	DEL	GACGGGCAG	GACGGGCAG	-													0.0490196078431373	5	0.929330005145667	1.34779750164366	0.970414201183432	1.49294492489759	0.206349206349206	0.913832199546484	0	gcgcggcctcctgcggctctGacgggcaggacgggcaggac					rs61397088	bycluster;alternate_allele	TCGA-OR-A5JL-01A-11D-A29I-10	TCGA-OR-A5JL-10A-01D-A29L-10	GACGGGCAG	GACGGGCAG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8f0c115d-1ae8-4660-8454-e09ef9150f48	11736376-4bb5-4a2d-b14a-f01a651e41eb	.	C14orf180-492	NM_001008404	exon5	c.482_784del	p.161_161del	GGCTCTGACGGGC	.	28	6	1	0	-|1.000;|0.000	0	0	0	0	0	-	105055127	GACGGGCAG	-	105055119	7	5	17	1	0	1	0	1	0	0	0	0	1767	1285	45	0	496	0	C14orf180	14	105055119	Frame_Shift_Del	DEL	GACGGGCAG	TCGA-OR-A5JL-01A-11D-A29I-10	185	105055119	2294421	70	3337										
LACTB	114294	hgsc.bcm.edu	37	chr15	63414083	63414083	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0490196078431373	5	0.929330005145667	1.34779750164366	0.970414201183432	1.49294492489759	0.206349206349206	0.913832199546484	0	gagacgccatgtaccggctcAtgtcagcagtgactgcccgg	13	13	2	2	rs34317102	byfrequency	TCGA-OR-A5JL-01A-11D-A29I-10	TCGA-OR-A5JL-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8f0c115d-1ae8-4660-8454-e09ef9150f48	11736376-4bb5-4a2d-b14a-f01a651e41eb	.	LACTB-90	NM_171846	exon1	c.A13C	p.M5L	CGGCTCATGTCAG	.	16	16	0	0	A|0.226;C|0.774	2	0	2	0	0	C	63414083	A	C	63414083	3	2	17	1	0	0	0	0	1	0	0	0	8619	217	8	5	15	5	LACTB	15	63414083	Missense_Mutation	SNP	A	TCGA-OR-A5JL-01A-11D-A29I-10		63414083	39117309	71	3338										
KBTBD13	390594	hgsc.bcm.edu	37	chr15	65369395	65369395	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0490196078431373	5	0.929330005145667	1.34779750164366	0.970414201183432	1.49294492489759	0.206349206349206	0.913832199546484	0	ggaggacgagctgctgcaggCcgtggagtgcgccgccttcc	17	13	0	0	rs2919358	byfrequency	TCGA-OR-A5JL-01A-11D-A29I-10	TCGA-OR-A5JL-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8f0c115d-1ae8-4660-8454-e09ef9150f48	11736376-4bb5-4a2d-b14a-f01a651e41eb	.	.	NM_001101362	exon1	c.C242T	p.A81V	TGCAGGCCGTGGA	.	11	6	0	0	C|0.452;T|0.548	0	0	0	0	0	T	65369395	C	T	65369395	3	4	17	1	0	0	0	0	1	0	0	0	8013	739	26	3	244	3	KBTBD13	15	65369395	Missense_Mutation	SNP	C	TCGA-OR-A5JL-01A-11D-A29I-10	1955312	65369395	37161997	72	3339										
ADAMTS7	11173	hgsc.bcm.edu	37	chr15	79066581	79066581	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0490196078431373	5	0.929330005145667	1.34779750164366	0.970414201183432	1.49294492489759	0.206349206349206	0.913832199546484	0	ggggtgccatcgaccacggcGtcccgcagcttctcggcaaa	13	15	1	0	rs74405922	byfrequency	TCGA-OR-A5JL-01A-11D-A29I-10	TCGA-OR-A5JL-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8f0c115d-1ae8-4660-8454-e09ef9150f48	11736376-4bb5-4a2d-b14a-f01a651e41eb	.	ADAMTS7-226	NM_014272	exon13	c.C1938T	p.D646D	CACGGCGTCCCGC	.	5	4	1	0	G|0.946;A|0.054	2	0	2	0	0	A	79066581	G	A	79066581	2	1	17	1	0	0	0	0	0	0	0	1	271	1136	40	1		1	ADAMTS7	15	79066581	Silent	SNP	G	TCGA-OR-A5JL-01A-11D-A29I-10	13697186	79066581	23464811	73	3340										
MEFV	4210	hgsc.bcm.edu	37	chr16	3304626	3304626	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.0490196078431373	5	0.929330005145667	1.34779750164366	0.970414201183432	1.49294492489759	0.206349206349206	0.913832199546484	0	cgacagccccctcccggcctCgggctggctgcaccgcaggc	13	20	0	0	rs3743930	byfrequency	TCGA-OR-A5JL-01A-11D-A29I-10	TCGA-OR-A5JL-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8f0c115d-1ae8-4660-8454-e09ef9150f48	11736376-4bb5-4a2d-b14a-f01a651e41eb	.	MEFV-228	NM_000243	exon2	c.G442C	p.E148Q	CGGCCTCGGGCTG	.	18	18	0	0	C|0.239;G|0.761	0	0	0	0	0	G	3304626	C	G	3304626	3	3	17	1	0	0	0	0	1	0	0	0	9487	893	31	2	1939	2	MEFV	16	3304626	Missense_Mutation	SNP	C	TCGA-OR-A5JL-01A-11D-A29I-10		3304626	87050127	74	3341										
CCDC102A	92922	hgsc.bcm.edu	37	chr16	57562804	57562804	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0490196078431373	5	0.929330005145667	1.34779750164366	0.970414201183432	1.49294492489759	0.206349206349206	0.913832199546484	0	ggcagtgcagtccgaccaccGgcgcatggtcttctccatct	11	15	3	0	rs12935069		TCGA-OR-A5JL-01A-11D-A29I-10	TCGA-OR-A5JL-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8f0c115d-1ae8-4660-8454-e09ef9150f48	11736376-4bb5-4a2d-b14a-f01a651e41eb	.	CCDC102A-91	NM_033212	exon2	c.C286T	p.R96W	ACCACCGGCGCAT	.	6	6	0	0	G|0.001;A|0.999	0	0	0	0	0	A	57562804	G	A	57562804	3	1	17	1	0	0	0	0	1	0	0	0	2742	1115	39	1	1398	1	CCDC102A	16	57562804	Missense_Mutation	SNP	G	TCGA-OR-A5JL-01A-11D-A29I-10	54258178	57562804	32791949	75	3342										
KCTD19	146212	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr16	67335694	67335694	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0490196078431373	5	0.929330005145667	1.34779750164366	0.970414201183432	1.49294492489759	0.206349206349206	0.913832199546484	0	aaggtttcctggcgacatacCcatgttcatccggtaccacc	8	14	1	0	novel		TCGA-OR-A5JL-01A-11D-A29I-10	TCGA-OR-A5JL-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8f0c115d-1ae8-4660-8454-e09ef9150f48	11736376-4bb5-4a2d-b14a-f01a651e41eb	.	KCTD19-69	NM_001100915	exon5	c.G775T	p.G259C	ACATACCCATGTT	.	118	45	140	0	.	0	0	0	0	0	A	67335694	C	A	67335694	3	1	17	1	0	0	0	0	1	0	0	0	8127	637	22	3	2053	3	KCTD19	16	67335694	Missense_Mutation	SNP	C	TCGA-OR-A5JL-01A-11D-A29I-10	9772890	67335694	23019059	76	3343										
ZFPM1	161882	hgsc.bcm.edu	37	chr16	88599697	88599705	+	In_Frame_Del	DEL	AGCCTCTGG	AGCCTCTGG	-													0.0490196078431373	5	0.929330005145667	1.34779750164366	0.970414201183432	1.49294492489759	0.206349206349206	0.913832199546484	0	caacggagaggccagagcggAgcctctggcccagaatggag					novel		TCGA-OR-A5JL-01A-11D-A29I-10	TCGA-OR-A5JL-10A-01D-A29L-10	AGCCTCTGG	AGCCTCTGG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8f0c115d-1ae8-4660-8454-e09ef9150f48	11736376-4bb5-4a2d-b14a-f01a651e41eb	.	ZFPM1-90	NM_153813	exon10	c.1331_1339del	p.444_447del	GAGCGGAGCCTCT	.	13	0	0	0	.	0	0	0	0	0	-	88599705	AGCCTCTGG	-	88599697	7	5	17	1	0	1	0	1	0	0	0	0	17694	304	11	0	1369	0	ZFPM1	16	88599697	In_Frame_Del	DEL	AGCCTCTGG	TCGA-OR-A5JL-01A-11D-A29I-10	21264003	88599697	1755056	77	3344										
RPL13	6137	hgsc.bcm.edu	37	chr16	89627671	89627671	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0490196078431373	5	0.929330005145667	1.34779750164366	0.970414201183432	1.49294492489759	0.206349206349206	0.913832199546484	0	gccaaggcgcgccgcatcgcCccgcgccccgcgtcgggtcc	14	21	0	0	rs174035	bycluster;byfrequency;by1000genomes	TCGA-OR-A5JL-01A-11D-A29I-10	TCGA-OR-A5JL-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8f0c115d-1ae8-4660-8454-e09ef9150f48	11736376-4bb5-4a2d-b14a-f01a651e41eb	.	RPL13-90	NM_001243131	exon3	c.C141T	p.A47A	CATCGCCCCGCGC	.	13	10	0	0	C|0.846;T|0.154	254	13	239	1	1	T	89627671	C	T	89627671	2	4	17	1	0	0	0	0	0	0	0	1	13594	610	22	3		3	RPL13	16	89627671	Silent	SNP	C	TCGA-OR-A5JL-01A-11D-A29I-10	1027974	89627671	727082	78	3345										
SPIRE2	84501	bcgsc.ca	37	chr16	89921057	89921057	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0490196078431373	5	0.929330005145667	1.34779750164366	0.970414201183432	1.49294492489759	0.206349206349206	0.913832199546484	0	actacaagctgcgcaaggtcAtggtgagcggggcagacgca	15	10	1	2	rs139065194		TCGA-OR-A5JL-01A-11D-A29I-10	TCGA-OR-A5JL-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8f0c115d-1ae8-4660-8454-e09ef9150f48	11736376-4bb5-4a2d-b14a-f01a651e41eb	.	SPIRE2-90	NM_032451	exon5	c.A889G	p.M297V	AAGGTCATGGTGA	.	138	9	131	0	A|1.000;G|0.000	0	0	0	0	0	G	89921057	A	G	89921057	3	3	17	1	0	0	0	0	1	0	0	0	15109	217	8	4	907	4	SPIRE2	16	89921057	Missense_Mutation	SNP	A	TCGA-OR-A5JL-01A-11D-A29I-10	293386	89921057	433696	79	3346										
TM4SF5	9032	broad.mit.edu;bcgsc.ca	37	chr17	4685848	4685848	+	Nonsense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0490196078431373	5	0.929330005145667	1.34779750164366	0.970414201183432	1.49294492489759	0.206349206349206	0.913832199546484	0	ggggtgcttggtgccatctaCtgcctctcggtgtctggagc	15	11	3	0	novel		TCGA-OR-A5JL-01A-11D-A29I-10	TCGA-OR-A5JL-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8f0c115d-1ae8-4660-8454-e09ef9150f48	11736376-4bb5-4a2d-b14a-f01a651e41eb	.	TM4SF5-91	NM_003963	exon3	c.C309G	p.Y103X	CATCTACTGCCTC	.	181	17	275	1	.	0	0	0	0	0	G	4685848	C	G	4685848	4	3	17	1	0	0	0	0	0	1	0	0	16008	576	20	3	319	3	TM4SF5	17	4685848	Nonsense_Mutation	SNP	C	TCGA-OR-A5JL-01A-11D-A29I-10		4685848	76509362	80	3347										
TP53	7157	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr17	7574023	7574023	+	Frame_Shift_Del	DEL	C	C	-													0.0490196078431373	5	0.929330005145667	1.34779750164366	0.970414201183432	1.49294492489759	0.206349206349206	0.913832199546484	0	ggaacatctcgaagcgctcaCgcccacggatctgcagcaac					novel		TCGA-OR-A5JL-01A-11D-A29I-10	TCGA-OR-A5JL-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8f0c115d-1ae8-4660-8454-e09ef9150f48	11736376-4bb5-4a2d-b14a-f01a651e41eb	.	TP53-70225	NM_000546	exon10	c.1004delG	p.R335fs	CGCTCACGCCCAC	.	105	69	157	0	.	0	0	0	0	0	-	7574023	C	-	7574023	7	5	17	1	0	1	0	1	0	0	0	0	16419	536	19	0	185	0	TP53	17	7574023	Frame_Shift_Del	DEL	C	TCGA-OR-A5JL-01A-11D-A29I-10	2888175	7574023	73621187	81	3348										
KDM6B	23135	hgsc.bcm.edu	37	chr17	7750176	7750177	+	Missense_Mutation	DNP	TT	TT	CC													0.0490196078431373	5	0.929330005145667	1.34779750164366	0.970414201183432	1.49294492489759	0.206349206349206	0.913832199546484	0	tgccactgcctccaccaccaTtaccaccaccaccaccacca					novel		TCGA-OR-A5JL-01A-11D-A29I-10	TCGA-OR-A5JL-10A-01D-A29L-10	TT	TT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8f0c115d-1ae8-4660-8454-e09ef9150f48	11736376-4bb5-4a2d-b14a-f01a651e41eb	.	KDM6B-205	NM_001080424	exon9	c.T752C	p.L251P	CACCATTACCACC	.	10	1	19	0	.	0	0	0	0	0	CC	7750177	TT	CC	7750176	3	2	17	1	0	0	0	0	1	0	0	0	8159	1490	52	4	773	4	KDM6B	17	7750176	Missense_Mutation	DNP	TT	TCGA-OR-A5JL-01A-11D-A29I-10	176153	7750176	73445034	82	3349										
MRM1	79922	broad.mit.edu	37	chr17	34958405	34958405	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0490196078431373	5	0.929330005145667	1.34779750164366	0.970414201183432	1.49294492489759	0.206349206349206	0.913832199546484	0	tggagcttctgtttggcatgAccccgtgtctcctggctctg	12	12	3	1	novel		TCGA-OR-A5JL-01A-11D-A29I-10	TCGA-OR-A5JL-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8f0c115d-1ae8-4660-8454-e09ef9150f48	11736376-4bb5-4a2d-b14a-f01a651e41eb	.	MRM1-90	NM_024864	exon1	c.A166C	p.T56P	GGCATGACCCCGT	.	77	20	51	16	.	8	8	0	0	0	C	34958405	A	C	34958405	3	2	17	1	0	0	0	0	1	0	0	0	9799	275	10	5	168	5	MRM1	17	34958405	Missense_Mutation	SNP	A	TCGA-OR-A5JL-01A-11D-A29I-10	27208229	34958405	46236805	83	3350										
KRT36	8689	bcgsc.ca	37	chr17	39643646	39643646	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0490196078431373	5	0.929330005145667	1.34779750164366	0.970414201183432	1.49294492489759	0.206349206349206	0.913832199546484	0	caatctctagcgcgttgaccGtacgtctcagctcgatgatc	9	13	2	2	rs2301354	byfrequency	TCGA-OR-A5JL-01A-11D-A29I-10	TCGA-OR-A5JL-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8f0c115d-1ae8-4660-8454-e09ef9150f48	11736376-4bb5-4a2d-b14a-f01a651e41eb	.	KRT36-90	NM_003771	exon5	c.C944T	p.T315M	TTGACCGTACGTC	.	74	4	88	0	G|0.523;A|0.477	0	0	0	0	0	A	39643646	G	A	39643646	3	1	17	1	0	0	0	0	1	0	0	0	8494	1145	40	1	471	1	KRT36	17	39643646	Missense_Mutation	SNP	G	TCGA-OR-A5JL-01A-11D-A29I-10	4685241	39643646	41551564	84	3351										
PRKAR1A	5573	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr17	66511671	66511695	+	Frame_Shift_Del	DEL	AGAGACCCATGGCATTCCTCAGGGA	AGAGACCCATGGCATTCCTCAGGGA	-													0.0490196078431373	5	0.929330005145667	1.34779750164366	0.970414201183432	1.49294492489759	0.206349206349206	0.913832199546484	0	gttgtgcactgctcgacctgAgagacccatggcattcctca					novel		TCGA-OR-A5JL-01A-11D-A29I-10	TCGA-OR-A5JL-10A-01D-A29L-10	AGAGACCCATGGCATTCCTCAGGGA	AGAGACCCATGGCATTCCTCAGGGA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8f0c115d-1ae8-4660-8454-e09ef9150f48	11736376-4bb5-4a2d-b14a-f01a651e41eb	.	PRKAR1A-1141	NM_001276290	exon1	c.131_155del	p.44_52del	GACCTGAGAGACC	.	39	11	92	0	.	0	0	0	0	0	-	66511695	AGAGACCCATGGCATTCCTCAGGGA	-	66511671	7	5	17	1	0	1	0	1	0	0	0	0	12535	304	11	0	133	0	PRKAR1A	17	66511671	Frame_Shift_Del	DEL	AGAGACCCATGGCATTCCTCAGGGA	TCGA-OR-A5JL-01A-11D-A29I-10	26868025	66511671	14683539	85	3352										
SOCS6	9306	broad.mit.edu;bcgsc.ca	37	chr18	67993002	67993002	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0490196078431373	5	0.929330005145667	1.34779750164366	0.970414201183432	1.49294492489759	0.206349206349206	0.913832199546484	0	tcagtgcaaagtagtggtccCatggttgtgacaagccttac	11	9	1	1	novel		TCGA-OR-A5JL-01A-11D-A29I-10	TCGA-OR-A5JL-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8f0c115d-1ae8-4660-8454-e09ef9150f48	11736376-4bb5-4a2d-b14a-f01a651e41eb	.	SOCS6-721	NM_004232	exon2	c.C1098T	p.P366P	TGGTCCCATGGTT	.	180	7	215	0	.	13	13	0	0	0	T	67993002	C	T	67993002	2	4	17	1	0	0	0	0	0	0	0	1	14953	581	21	3		3	SOCS6	18	67993002	Silent	SNP	C	TCGA-OR-A5JL-01A-11D-A29I-10		67993002	10084246	86	3353										
POLRMT	5442	hgsc.bcm.edu	37	chr19	621561	621561	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0490196078431373	5	0.929330005145667	1.34779750164366	0.970414201183432	1.49294492489759	0.206349206349206	0.913832199546484	0	ctgcagcaccaggtccagcaCgcgcccgttgacgcgccagg	13	17	0	1	rs10421235		TCGA-OR-A5JL-01A-11D-A29I-10	TCGA-OR-A5JL-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8f0c115d-1ae8-4660-8454-e09ef9150f48	11736376-4bb5-4a2d-b14a-f01a651e41eb	.	POLRMT-92	NM_005035	exon10	c.G2137T	p.V713L	CCAGCACGCGCCC	.	18	5	0	0	C|0.918;A|0.082	12	12	0	0	0	A	621561	C	A	621561	3	1	17	1	0	0	0	0	1	0	0	0	12267	536	19	2	1603	2	POLRMT	19	621561	Missense_Mutation	SNP	C	TCGA-OR-A5JL-01A-11D-A29I-10		621561	58507422	87	3354										
SHD	56961	bcgsc.ca	37	chr19	4280207	4280207	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0490196078431373	5	0.929330005145667	1.34779750164366	0.970414201183432	1.49294492489759	0.206349206349206	0.913832199546484	0	gaggacccctatgaggacgcGgagagccgcttggagccgga	17	11	0	2	rs56261530	byfrequency	TCGA-OR-A5JL-01A-11D-A29I-10	TCGA-OR-A5JL-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8f0c115d-1ae8-4660-8454-e09ef9150f48	11736376-4bb5-4a2d-b14a-f01a651e41eb	.	SHD-90	NM_020209	exon1	c.G147C	p.A49A	GGACGCGGAGAGC	.	58	5	95	1	G|0.945;C|0.055	0	0	0	0	0	C	4280207	G	C	4280207	2	2	17	1	0	0	0	0	0	0	0	1	14310	1103	39	2		2	SHD	19	4280207	Silent	SNP	G	TCGA-OR-A5JL-01A-11D-A29I-10	3658646	4280207	54848776	88	3355										
DUS3L	56931	bcgsc.ca	37	chr19	5789565	5789565	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0490196078431373	5	0.929330005145667	1.34779750164366	0.970414201183432	1.49294492489759	0.206349206349206	0.913832199546484	0	caggttctgtccctcgggccTcaggtgggccccagcgaagc	14	15	2	0	rs2436487	byfrequency	TCGA-OR-A5JL-01A-11D-A29I-10	TCGA-OR-A5JL-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8f0c115d-1ae8-4660-8454-e09ef9150f48	11736376-4bb5-4a2d-b14a-f01a651e41eb	.	DUS3L-90	NM_020175	exon3	c.A553G	p.R185G	CGGGCCTCAGGTG	.	41	35	9	0	T|0.554;C|0.446	4	0	4	0	0	C	5789565	T	C	5789565	3	2	17	1	0	0	0	0	1	0	0	0	4818	1550	54	4	1443	4	DUS3L	19	5789565	Missense_Mutation	SNP	T	TCGA-OR-A5JL-01A-11D-A29I-10	1509358	5789565	53339418	89	3356										
KANK2	25959	hgsc.bcm.edu	37	chr19	11303817	11303817	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0490196078431373	5	0.929330005145667	1.34779750164366	0.970414201183432	1.49294492489759	0.206349206349206	0.913832199546484	0	ggtggccaggcctggggctgGgggtcagcctgccgggcctg	21	12	1	0	novel		TCGA-OR-A5JL-01A-11D-A29I-10	TCGA-OR-A5JL-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8f0c115d-1ae8-4660-8454-e09ef9150f48	11736376-4bb5-4a2d-b14a-f01a651e41eb	.	KANK2-68	NM_015493	exon2	c.C939G	p.P313P	GGGCTGGGGGTCA	.	33	25	3	0	.	1	0	1	0	0	C	11303817	G	C	11303817	2	2	17	1	0	0	0	0	0	0	0	1	7998	1219	43	3		3	KANK2	19	11303817	Silent	SNP	G	TCGA-OR-A5JL-01A-11D-A29I-10	5514252	11303817	47825166	90	3357										
CCDC105	126402	hgsc.bcm.edu	37	chr19	15133926	15133926	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0490196078431373	5	0.929330005145667	1.34779750164366	0.970414201183432	1.49294492489759	0.206349206349206	0.913832199546484	0	gcagcaagagcagcgcggacCcctagtgaccccagcgtccc	12	17	0	2	rs8112667	byfrequency	TCGA-OR-A5JL-01A-11D-A29I-10	TCGA-OR-A5JL-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8f0c115d-1ae8-4660-8454-e09ef9150f48	11736376-4bb5-4a2d-b14a-f01a651e41eb	.	CCDC105-91	NM_173482	exon7	c.C1495A	p.P499T	GCGGACCCCTAGT	.	7	7	1	0	C|0.671;A|0.329	0	0	0	0	0	A	15133926	C	A	15133926	3	1	17	1	0	0	0	0	1	0	0	0	2746	623	22	3	1521	3	CCDC105	19	15133926	Missense_Mutation	SNP	C	TCGA-OR-A5JL-01A-11D-A29I-10	3830109	15133926	43995057	91	3358										
SBSN	374897	bcgsc.ca	37	chr19	36015652	36015652	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0490196078431373	5	0.929330005145667	1.34779750164366	0.970414201183432	1.49294492489759	0.206349206349206	0.913832199546484	0	ttgatgaaaggcgtgttgacCgaggcctgcaattcaaggac	13	8	1	3	rs17705633	byfrequency	TCGA-OR-A5JL-01A-11D-A29I-10	TCGA-OR-A5JL-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8f0c115d-1ae8-4660-8454-e09ef9150f48	11736376-4bb5-4a2d-b14a-f01a651e41eb	.	SBSN-91	NM_001166034	exon3	c.G1710A	p.S570S	GTTGACCGAGGCC	.	115	5	177	3	C|0.874;T|0.126	0	0	0	0	0	T	36015652	C	T	36015652	2	4	17	1	0	0	0	0	0	0	0	1	13899	639	23	1		1	SBSN	19	36015652	Silent	SNP	C	TCGA-OR-A5JL-01A-11D-A29I-10	20881726	36015652	23113331	92	3359										
BCAT2	587	broad.mit.edu	37	chr19	49309949	49309949	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0490196078431373	5	0.929330005145667	1.34779750164366	0.970414201183432	1.49294492489759	0.206349206349206	0.913832199546484	0	gcttcttatgaggcttctgtGtcatttccagctgcaggtct	10	10	4	1	novel		TCGA-OR-A5JL-01A-11D-A29I-10	TCGA-OR-A5JL-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8f0c115d-1ae8-4660-8454-e09ef9150f48	11736376-4bb5-4a2d-b14a-f01a651e41eb	.	BCAT2-91	NM_001190	exon3	c.C125A	p.T42K	TTCTGTGTCATTT	.	15	2	12	0	.	34	34	0	0	0	T	49309949	G	T	49309949	3	4	17	1	0	0	0	0	1	0	0	0	1356	1377	48	3	1089	3	BCAT2	19	49309949	Missense_Mutation	SNP	G	TCGA-OR-A5JL-01A-11D-A29I-10	13294297	49309949	9819034	93	3360										
SIGLEC12	89858	bcgsc.ca	37	chr19	52004743	52004743	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0490196078431373	5	0.929330005145667	1.34779750164366	0.970414201183432	1.49294492489759	0.206349206349206	0.913832199546484	0	tctcctcctgcactgctcgaGctgggttgtttgtggccact	11	13	1	0	rs3810110	byfrequency	TCGA-OR-A5JL-01A-11D-A29I-10	TCGA-OR-A5JL-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8f0c115d-1ae8-4660-8454-e09ef9150f48	11736376-4bb5-4a2d-b14a-f01a651e41eb	.	SIGLEC12-96	NM_053003	exon1	c.C245T	p.A82V	GCTCGAGCTGGGT	.	166	6	207	2	G|0.417;A|0.582	1	1	0	0	0	A	52004743	G	A	52004743	3	1	17	1	0	0	0	0	1	0	0	0	14343	971	34	3	1647	3	SIGLEC12	19	52004743	Missense_Mutation	SNP	G	TCGA-OR-A5JL-01A-11D-A29I-10	2694794	52004743	7124240	94	3361										
LILRB3	11025	bcgsc.ca	37	chr19	54725992	54725992	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0490196078431373	5	0.929330005145667	1.34779750164366	0.970414201183432	1.49294492489759	0.206349206349206	0.913832199546484	0	agggctgagagggtgggtttGctgtaggctcctaggagaga	19	5	0	2	rs148339740	byfrequency	TCGA-OR-A5JL-01A-11D-A29I-10	TCGA-OR-A5JL-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8f0c115d-1ae8-4660-8454-e09ef9150f48	11736376-4bb5-4a2d-b14a-f01a651e41eb	.	LILRB3-93	NM_006864	exon4	c.C366T	p.S122S	GGGTTTGCTGTAG	.	117	8	220	1	G|0.881;A|0.119	0	0	0	0	0	A	54725992	G	A	54725992	2	1	17	1	0	0	0	0	0	0	0	1	8815	1310	46	3		3	LILRB3	19	54725992	Silent	SNP	G	TCGA-OR-A5JL-01A-11D-A29I-10	2721249	54725992	4402991	95	3362										
ZNF419	79744	bcgsc.ca	37	chr19	58004346	58004346	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0490196078431373	5	0.929330005145667	1.34779750164366	0.970414201183432	1.49294492489759	0.206349206349206	0.913832199546484	0	agaaacccttaaaaagacaaGagggcagggtcccagttttg	11	8	0	3	rs2074076	byfrequency	TCGA-OR-A5JL-01A-11D-A29I-10	TCGA-OR-A5JL-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8f0c115d-1ae8-4660-8454-e09ef9150f48	11736376-4bb5-4a2d-b14a-f01a651e41eb	.	ZNF419-90	NM_001098491	exon5	c.G424C	p.E142Q	AGACAAGAGGGCA	.	289	11	339	1	G|0.324;C|0.676	8	8	0	0	0	C	58004346	G	C	58004346	3	2	17	1	0	0	0	0	1	0	0	0	17933	943	33	3	442	3	ZNF419	19	58004346	Missense_Mutation	SNP	G	TCGA-OR-A5JL-01A-11D-A29I-10	3278354	58004346	1124637	96	3363										
ACTR5	79913	hgsc.bcm.edu	37	chr20	37377139	37377139	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0490196078431373	5	0.929330005145667	1.34779750164366	0.970414201183432	1.49294492489759	0.206349206349206	0.913832199546484	0	aagatggcggcgaacgtgttCccgttccgcgacgcccgtgc	14	14	0	1	rs2254105	byfrequency	TCGA-OR-A5JL-01A-11D-A29I-10	TCGA-OR-A5JL-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8f0c115d-1ae8-4660-8454-e09ef9150f48	11736376-4bb5-4a2d-b14a-f01a651e41eb	.	ACTR5-90	NM_024855	exon1	c.C18T	p.F6F	CGTGTTCCCGTTC	.	17	15	1	0	C|0.769;T|0.231	0	0	0	0	0	T	37377139	C	T	37377139	2	4	17	1	0	0	0	0	0	0	0	1	215	854	30	3		3	ACTR5	20	37377139	Silent	SNP	C	TCGA-OR-A5JL-01A-11D-A29I-10		37377139	25648381	97	3364										
CYP24A1	1591	hgsc.bcm.edu;bcgsc.ca	37	chr20	52788140	52788140	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0490196078431373	5	0.929330005145667	1.34779750164366	0.970414201183432	1.49294492489759	0.206349206349206	0.913832199546484	0	ttgattttgttgtccagcttCatcacttcccctggtttcat	6	11	3	1	novel		TCGA-OR-A5JL-01A-11D-A29I-10	TCGA-OR-A5JL-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8f0c115d-1ae8-4660-8454-e09ef9150f48	11736376-4bb5-4a2d-b14a-f01a651e41eb	.	CYP24A1-228	NM_000782	exon3	c.G519A	p.M173I	CAGCTTCATCACT	.	52	4	82	0	.	0	0	0	0	0	T	52788140	C	T	52788140	3	4	17	1	0	0	0	0	1	0	0	0	4160	826	29	3	1061	3	CYP24A1	20	52788140	Missense_Mutation	SNP	C	TCGA-OR-A5JL-01A-11D-A29I-10	15411001	52788140	10237380	98	3365										
DIDO1	11083	hgsc.bcm.edu	37	chr20	61512420	61512420	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0490196078431373	5	0.929330005145667	1.34779750164366	0.970414201183432	1.49294492489759	0.206349206349206	0.913832199546484	0	tgccttccagccgtcctgctCggaccccgctgggggctttt	12	16	0	0	rs201746991		TCGA-OR-A5JL-01A-11D-A29I-10	TCGA-OR-A5JL-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8f0c115d-1ae8-4660-8454-e09ef9150f48	11736376-4bb5-4a2d-b14a-f01a651e41eb	.	DIDO1-96	NM_001193369	exon16	c.G4888A	p.E1630K	CCTGCTCGGACCC	.	12	9	1	0	C|0.995;T|0.005	1	1	0	0	0	T	61512420	C	T	61512420	3	4	17	1	0	0	0	0	1	0	0	0	4533	893	31	1	1838	1	DIDO1	20	61512420	Missense_Mutation	SNP	C	TCGA-OR-A5JL-01A-11D-A29I-10	8724280	61512420	1513100	99	3366										
SCARF2	91179	hgsc.bcm.edu	37	chr22	20780097	20780097	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0490196078431373	5	0.929330005145667	1.34779750164366	0.970414201183432	1.49294492489759	0.206349206349206	0.913832199546484	0	tcctcgggcagccccgggggGcgcggcgttgggtcgcgggt	21	13	0	0	rs759609	bycluster;byfrequency;by1000genomes	TCGA-OR-A5JL-01A-11D-A29I-10	TCGA-OR-A5JL-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8f0c115d-1ae8-4660-8454-e09ef9150f48	11736376-4bb5-4a2d-b14a-f01a651e41eb	.	SCARF2-341	NM_153334	exon11	c.C2181G	p.R727R	CGGGGGGCGCGGC	.	6	5	0	0	G|0.826;C|0.174	0	0	0	0	0	C	20780097	G	C	20780097	2	2	17	1	0	0	0	0	0	0	0	1	13919	1190	42	3		3	SCARF2	22	20780097	Silent	SNP	G	TCGA-OR-A5JL-01A-11D-A29I-10		20780097	30524469	100	3367										
SEC14L4	284904	ucsc.edu;bcgsc.ca	37	chr22	30891250	30891250	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0490196078431373	5	0.929330005145667	1.34779750164366	0.970414201183432	1.49294492489759	0.206349206349206	0.913832199546484	0	ccgctgctcaccttctgagtTtgcagctcacactcatgcaa	7	15	4	1	rs9606738	byfrequency	TCGA-OR-A5JL-01A-11D-A29I-10	TCGA-OR-A5JL-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8f0c115d-1ae8-4660-8454-e09ef9150f48	11736376-4bb5-4a2d-b14a-f01a651e41eb	.	SEC14L4-91	NM_001161368	exon5	c.A414G	p.Q138Q	CTGAGTTTGCAGC	.	52	5	69	0	T|0.824;C|0.176	0	0	0	0	0	C	30891250	T	C	30891250	2	2	17	1	0	0	0	0	0	0	0	1	14019	1838	64	4		4	SEC14L4	22	30891250	Silent	SNP	T	TCGA-OR-A5JL-01A-11D-A29I-10	10111153	30891250	20413316	101	3368										
SEC14L4	284904	bcgsc.ca	37	chr22	30891294	30891294	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0490196078431373	5	0.929330005145667	1.34779750164366	0.970414201183432	1.49294492489759	0.206349206349206	0.913832199546484	0	cagctcacagactttgatgcGcttccggatcatatcctgct	8	13	2	2	rs9606739	byfrequency	TCGA-OR-A5JL-01A-11D-A29I-10	TCGA-OR-A5JL-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8f0c115d-1ae8-4660-8454-e09ef9150f48	11736376-4bb5-4a2d-b14a-f01a651e41eb	.	SEC14L4-91	NM_001161368	exon5	c.C370G	p.R124G	TGATGCGCTTCCG	.	63	4	101	0	G|0.832;C|0.167	0	0	0	0	0	C	30891294	G	C	30891294	3	2	17	1	0	0	0	0	1	0	0	0	14019	1087	38	2	888	2	SEC14L4	22	30891294	Missense_Mutation	SNP	G	TCGA-OR-A5JL-01A-11D-A29I-10	44	30891294	20413272	102	3369										
C1orf159	54991	broad.mit.edu	37	chr1	1019753	1019753	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0538922155688623	9	0.929330005145667	1.15715672527235	2.25259842519685	0.586614173228346	0.419710144927536	1	0	ctgaggactgtggcggggggAtcattgcagccttgaaaagg	17	7	1	2	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	.	NM_017891	exon9	c.T482C	p.I161T	GGGGGGATCATTG	.	47	8	47	7	.	0	0	0	0	0	G	1019753	A	G	1019753	3	3	18	1	0	0	0	0	1	0	0	0	2014	333	12	4	122	4	C1orf159	1	1019753	Missense_Mutation	SNP	A	TCGA-OR-A5JP-01A-11D-A29I-10		1019753	248230868	1	3370										
SRM	6723	hgsc.bcm.edu	37	chr1	11119899	11119899	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0538922155688623	9	0.929330005145667	1.15715672527235	2.25259842519685	0.586614173228346	0.419710144927536	1	0	agcagctgctccacctgcagTgacagggcctggccgggcca	14	15	0	1	rs7545802		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	SRM-90	NM_003132	exon1	c.A102G	p.S34S	CTGCAGTGACAGG	.	4	4	0	0	T|0.001;C|0.999	44	0	44	0	0	C	11119899	T	C	11119899	2	2	18	1	0	0	0	0	0	0	0	1	15188	1683	59	4		4	SRM	1	11119899	Silent	SNP	T	TCGA-OR-A5JP-01A-11D-A29I-10	10100146	11119899	238130722	2	3371										
UBR4	23352	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	19518980	19518980	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0538922155688623	9	0.929330005145667	1.15715672527235	2.25259842519685	0.586614173228346	0.419710144927536	1	0	agatacgcttcttacctcacCaccagcccggcgagaactgc	8	16	2	2	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	UBR4-612	NM_020765	exon10	c.G1198T	p.G400C	CCTCACCACCAGC	.	210	17	179	0	.	0	0	0	0	0	A	19518980	C	A	19518980	3	1	18	1	0	0	0	0	1	0	0	0	16942	594	21	3	14741	3	UBR4	1	19518980	Missense_Mutation	SNP	C	TCGA-OR-A5JP-01A-11D-A29I-10	8399081	19518980	229731641	3	3372										
ECE1	1889	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	21599251	21599252	+	Frame_Shift_Ins	INS	-	-	GT													0.0538922155688623	9	0.929330005145667	1.15715672527235	2.25259842519685	0.586614173228346	0.419710144927536	1	0	gttgctgaaggtcccccagcINSgtgagtggccatcagggact					novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	ECE1-93	NM_001397	exon4	c.434_435insAC	p.R145fs	CCCCAGCGTGAGT	.	319	87	217	0	.	0	0	0	0	0	GT	21599252	-	GT	21599251	7	5	18	1	0	1	1	0	0	0	0	0	4900	768	27	0	1942	0	ECE1	1	21599251	Frame_Shift_Ins	INS	-	TCGA-OR-A5JP-01A-11D-A29I-10	2080271	21599251	227651370	4	3373										
HSPG2	3339	hgsc.bcm.edu;broad.mit.edu	37	chr1	22191465	22191467	+	In_Frame_Del	DEL	GGA	GGA	-													0.0538922155688623	9	0.929330005145667	1.15715672527235	2.25259842519685	0.586614173228346	0.419710144927536	1	0	atgctggccgccagcggcacGgaggagaacgtggcccggat					novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	GGA	GGA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	HSPG2-141	NM_005529	exon36	c.4495_4497del	p.1499_1499del	CGGCACGGAGGAG	.	96	29	10	0	.	0	0	0	0	0	-	22191467	GGA	-	22191465	7	5	18	1	0	1	0	1	0	0	0	0	7451	1103	39	0	8926	0	HSPG2	1	22191465	In_Frame_Del	DEL	GGA	TCGA-OR-A5JP-01A-11D-A29I-10	592214	22191465	227059156	5	3374										
OPRD1	4985	hgsc.bcm.edu	37	chr1	29138975	29138975	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0538922155688623	9	0.929330005145667	1.15715672527235	2.25259842519685	0.586614173228346	0.419710144927536	1	0	ggacgcctaccctagcgcctGccccagcgctggcgccaatg	12	18	0	0	rs1042114	byfrequency	TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	OPRD1-69	NM_000911	exon1	c.G80T	p.C27F	GCGCCTGCCCCAG	.	5	5	0	0	G|0.061;T|0.939	0	0	0	0	0	T	29138975	G	T	29138975	3	4	18	1	0	0	0	0	1	0	0	0	10913	1319	46	3	82	3	OPRD1	1	29138975	Missense_Mutation	SNP	G	TCGA-OR-A5JP-01A-11D-A29I-10	6947510	29138975	220111646	6	3375										
TIE1	7075	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	43779576	43779576	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0538922155688623	9	0.929330005145667	1.15715672527235	2.25259842519685	0.586614173228346	0.419710144927536	1	0	atcctggctgcccttttaacCctggtgtgcatccgcagaag	10	13	0	1	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	TIE1-1404	NM_005424	exon14	c.C2346A	p.T782T	TTTAACCCTGGTG	.	300	25	174	0	.	1	1	0	0	0	A	43779576	C	A	43779576	2	1	18	1	0	0	0	0	0	0	0	1	15930	610	22	3		3	TIE1	1	43779576	Silent	SNP	C	TCGA-OR-A5JP-01A-11D-A29I-10	14640601	43779576	205471045	7	3376										
C1orf87	127795	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	60499262	60499262	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0538922155688623	9	0.929330005145667	1.15715672527235	2.25259842519685	0.586614173228346	0.419710144927536	1	0	agtgccatcttcaaaatctcCaacagactcctgttcacttc	4	14	4	1	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	C1orf87-154	NM_152377	exon7	c.G915T	p.L305F	AATCTCCAACAGA	.	150	24	135	0	.	0	0	0	0	0	A	60499262	C	A	60499262	3	1	18	1	0	0	0	0	1	0	0	0	2070	593	21	3	749	3	C1orf87	1	60499262	Missense_Mutation	SNP	C	TCGA-OR-A5JP-01A-11D-A29I-10	16719686	60499262	188751359	8	3377										
LRRC7	57554	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	70493957	70493957	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0538922155688623	9	0.929330005145667	1.15715672527235	2.25259842519685	0.586614173228346	0.419710144927536	1	0	taagccaagccatggagtgcGtgttgagaattcaaatccaa	10	8	1	1	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	LRRC7-163	NM_020794	exon16	c.G1784A	p.R595H	GAGTGCGTGTTGA	.	211	43	203	1	.	0	0	0	0	0	A	70493957	G	A	70493957	3	1	18	1	0	0	0	0	1	0	0	0	9047	1145	40	1	1846	1	LRRC7	1	70493957	Missense_Mutation	SNP	G	TCGA-OR-A5JP-01A-11D-A29I-10	9994695	70493957	178756664	9	3378										
COL11A1	1301	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	103487285	103487285	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.0538922155688623	9	0.929330005145667	1.15715672527235	2.25259842519685	0.586614173228346	0.419710144927536	1	0	gctcaaccactgctggttctCctttctgtcctttctctcca	5	16	4	0	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	COL11A1-586	NM_080629	exon9	c.G1322C	p.G441A	GGTTCTCCTTTCT	.	129	48	110	0	.	17	11	6	0	0	G	103487285	C	G	103487285	3	3	18	1	0	0	0	0	1	0	0	0	3673	855	30	3	4370	3	COL11A1	1	103487285	Missense_Mutation	SNP	C	TCGA-OR-A5JP-01A-11D-A29I-10	32993328	103487285	145763336	10	3379										
SPAG17	200162	broad.mit.edu	37	chr1	118642324	118642324	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0538922155688623	9	0.929330005145667	1.15715672527235	2.25259842519685	0.586614173228346	0.419710144927536	1	0	aagatattttaatcacgctgGttataggaatgccaagctca	8	7	2	1	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	SPAG17-158	NM_206996	exon6	c.C734A	p.T245N	ACGCTGGTTATAG	.	78	3	75	0	.	0	0	0	0	0	T	118642324	G	T	118642324	3	4	18	1	0	0	0	0	1	0	0	0	15016	1261	44	3	6109	3	SPAG17	1	118642324	Missense_Mutation	SNP	G	TCGA-OR-A5JP-01A-11D-A29I-10	15155039	118642324	130608297	11	3380										
RPRD2	23248	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	150444740	150444740	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0538922155688623	9	0.929330005145667	1.15715672527235	2.25259842519685	0.586614173228346	0.419710144927536	1	0	caggggagccgatccagaccGtagagtccatccgagttcct	12	13	0	2	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	RPRD2-23	NM_015203	exon11	c.G3316A	p.V1106I	CAGACCGTAGAGT	.	52	8	54	0	.	31	31	0	0	0	A	150444740	G	A	150444740	3	1	18	1	0	0	0	0	1	0	0	0	13652	1145	40	1	3358	1	RPRD2	1	150444740	Missense_Mutation	SNP	G	TCGA-OR-A5JP-01A-11D-A29I-10	31802416	150444740	98805881	12	3381										
SLC27A3	11000	hgsc.bcm.edu	37	chr1	153748161	153748161	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0538922155688623	9	0.929330005145667	1.15715672527235	2.25259842519685	0.586614173228346	0.419710144927536	1	0	cgacccggaaggtcccgaggGgggctgcagcctggcctggc	18	14	0	0	rs34527123	byfrequency	TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	SLC27A3-91	NM_024330	exon1	c.G329C	p.G110A	CCGAGGGGGGCTG	.	13	7	0	0	G|0.051;C|0.949	5	2	3	0	0	C	153748161	G	C	153748161	3	2	18	1	0	0	0	0	1	0	0	0	14562	1232	43	3	331	3	SLC27A3	1	153748161	Missense_Mutation	SNP	G	TCGA-OR-A5JP-01A-11D-A29I-10	3303421	153748161	95502460	13	3382										
TNR	7143	bcgsc.ca	37	chr1	175335234	175335234	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0538922155688623	9	0.929330005145667	1.15715672527235	2.25259842519685	0.586614173228346	0.419710144927536	1	0	atgagggagatggaggtctcCgaggaggctgtcaccatgag	17	7	2	3	rs1385541	byfrequency	TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	TNR-324	NM_003285	exon11	c.G2094A	p.S698S	GGTCTCCGAGGAG	.	276	7	222	2	C|0.809;T|0.191	0	0	0	0	0	T	175335234	C	T	175335234	2	4	18	1	0	0	0	0	0	0	0	1	16375	639	23	1		1	TNR	1	175335234	Silent	SNP	C	TCGA-OR-A5JP-01A-11D-A29I-10	21587073	175335234	73915387	14	3383										
TSEN15	116461	bcgsc.ca	37	chr1	184023529	184023529	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0538922155688623	9	0.929330005145667	1.15715672527235	2.25259842519685	0.586614173228346	0.419710144927536	1	0	gatataggagatgccacccaAgtttatgtagcgttcttggt	11	7	1	1	rs1046934	byfrequency	TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	TSEN15-90	NM_001127394	exon2	c.A177C	p.Q59H	CACCCAAGTTTAT	.	73	4	101	0	A|0.705;C|0.295	18	18	0	0	0	C	184023529	A	C	184023529	3	2	18	1	0	0	0	0	1	0	0	0	16649	69	3	5	183	5	TSEN15	1	184023529	Missense_Mutation	SNP	A	TCGA-OR-A5JP-01A-11D-A29I-10	8688295	184023529	65227092	15	3384										
C1orf106	55765	hgsc.bcm.edu	37	chr1	200880978	200880978	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0538922155688623	9	0.929330005145667	1.15715672527235	2.25259842519685	0.586614173228346	0.419710144927536	1	0	cgcctggcgagtgggagctgCgccgcgcagccccgggccct	17	17	0	0	rs296520	byfrequency	TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	C1orf106-93	NM_018265	exon9	c.C1654T	p.R552C	GAGCTGCGCCGCG	.	8	8	0	0	C|0.242;T|0.758	0	0	0	0	0	T	200880978	C	T	200880978	3	4	18	1	0	0	0	0	1	0	0	0	1986	768	27	1	1646	1	C1orf106	1	200880978	Missense_Mutation	SNP	C	TCGA-OR-A5JP-01A-11D-A29I-10	16857449	200880978	48369643	16	3385										
PLXNA2	5362	broad.mit.edu	37	chr1	208225716	208225716	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0538922155688623	9	0.929330005145667	1.15715672527235	2.25259842519685	0.586614173228346	0.419710144927536	1	0	cccaggtagactgccacgctGctcccagccccaaggtaatg	10	16	0	1	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	PLXNA2-92	NM_025179	exon15	c.C2949A	p.S983R	CACGCTGCTCCCA	.	94	4	66	1	.	4	4	0	0	0	T	208225716	G	T	208225716	3	4	18	1	0	0	0	0	1	0	0	0	12149	1310	46	3	2807	3	PLXNA2	1	208225716	Missense_Mutation	SNP	G	TCGA-OR-A5JP-01A-11D-A29I-10	7344738	208225716	41024905	17	3386										
JMJD4	65094	hgsc.bcm.edu	37	chr1	227923081	227923081	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0538922155688623	9	0.929330005145667	1.15715672527235	2.25259842519685	0.586614173228346	0.419710144927536	1	0	gggcgccgcgtttctgccccGccagcgcctggggctccggg	17	17	1	0	rs7419238		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	JMJD4-226	NM_023007	exon1	c.C32T	p.A11V	TGCCCCGCCAGCG	.	9	8	0	0	G|0.002;A|0.998	1	0	1	0	0	A	227923081	G	A	227923081	3	1	18	1	0	0	0	0	1	0	0	0	7972	1087	38	1	1383	1	JMJD4	1	227923081	Missense_Mutation	SNP	G	TCGA-OR-A5JP-01A-11D-A29I-10	19697365	227923081	21327540	18	3387										
OBSCN	84033	hgsc.bcm.edu	37	chr1	228504669	228504669	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0538922155688623	9	0.929330005145667	1.15715672527235	2.25259842519685	0.586614173228346	0.419710144927536	1	0	cgcgacgccgtggcctctgcGcggctcaccgtgctgggtgg	17	15	2	0	rs61825302	bycluster;byfrequency;by1000genomes	TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	OBSCN-403	NM_001271223	exon62	c.G16416A	p.A5472A	CTCTGCGCGGCTC	.	13	11	0	0	G|0.841;A|0.159	0	0	0	0	0	A	228504669	G	A	228504669	2	1	18	1	0	0	0	0	0	0	0	1	10841	1074	38	1		1	OBSCN	1	228504669	Silent	SNP	G	TCGA-OR-A5JP-01A-11D-A29I-10	581588	228504669	20745952	19	3388										
SH3BP5L	80851	hgsc.bcm.edu	37	chr1	249106348	249106348	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0538922155688623	9	0.929330005145667	1.15715672527235	2.25259842519685	0.586614173228346	0.419710144927536	1	0	tcctccagccccgcaccctcGgccccctcaatcccgctgtc	6	24	1	0	rs202116012		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	SH3BP5L-90	NM_030645	exon7	c.C933G	p.A311A	ACCCTCGGCCCCC	.	18	8	0	0	G|0.991;C|0.008	24	17	6	0	1	C	249106348	G	C	249106348	2	2	18	1	0	0	0	0	0	0	0	1	14283	1103	39	2		2	SH3BP5L	1	249106348	Silent	SNP	G	TCGA-OR-A5JP-01A-11D-A29I-10	20601679	249106348	144273	20	3389										
MYT1L	23040	broad.mit.edu	37	chr2	1946857	1946859	+	In_Frame_Del	DEL	CTC	CTC	-													0.0538922155688623	9	0.929330005145667	1.15715672527235	2.25259842519685	0.586614173228346	0.419710144927536	1	0	tcctcatcctcctcctcgatCtcctcctcctcctcccggtc					rs148009982	by1000genomes;alternate_allele	TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	MYT1L-95	NM_015025	exon9	c.400_402del	p.134_134del	CTCGATCTCCTCC	.	223	8	129	0	.	0	0	0	0	0	-	1946859	CTC	-	1946857	7	5	18	1	0	1	0	1	0	0	0	0	10135	912	32	0	3220	0	MYT1L	2	1946857	In_Frame_Del	DEL	CTC	TCGA-OR-A5JP-01A-11D-A29I-10		1946857	241252516	21	3390										
ASAP2	8853	hgsc.bcm.edu	37	chr2	9533755	9533755	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0538922155688623	9	0.929330005145667	1.15715672527235	2.25259842519685	0.586614173228346	0.419710144927536	1	0	acagccgcccagccgcctccCgcagaagaagcctgcgccgg	12	19	0	2	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	ASAP2-90	NM_003887	exon24	c.C2663T	p.P888L	GCCTCCCGCAGAA	.	33	16	0	0	.	10	6	4	0	0	T	9533755	C	T	9533755	3	4	18	1	0	0	0	0	1	0	0	0	1012	652	23	1	2757	1	ASAP2	2	9533755	Missense_Mutation	SNP	C	TCGA-OR-A5JP-01A-11D-A29I-10	7586898	9533755	233665618	22	3391										
TMEM214	54867	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	27257050	27257050	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0538922155688623	9	0.929330005145667	1.15715672527235	2.25259842519685	0.586614173228346	0.419710144927536	1	0	cctaagaaaccagggaacaaGaagcagccaaagaaggtggc	12	9	0	3	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	TMEM214-115	NM_017727	exon2	c.G267A	p.K89K	GAACAAGAAGCAG	.	226	43	177	0	.	37	29	8	0	0	A	27257050	G	A	27257050	2	1	18	1	0	0	0	0	0	0	0	1	16174	933	33	3		3	TMEM214	2	27257050	Silent	SNP	G	TCGA-OR-A5JP-01A-11D-A29I-10	17723295	27257050	215942323	23	3392										
PLB1	151056	hgsc.bcm.edu;bcgsc.ca	37	chr2	28836923	28836923	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0538922155688623	9	0.929330005145667	1.15715672527235	2.25259842519685	0.586614173228346	0.419710144927536	1	0	gcccttcctgagaacccctcGgaatagtaactacacgtacc	7	15	0	1	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	PLB1-141	NM_153021	exon44	c.G3155T	p.R1052L	CCCCTCGGAATAG	.	65	4	50	0	.	1	1	0	0	0	T	28836923	G	T	28836923	3	4	18	1	0	0	0	0	1	0	0	0	12053	1116	39	2	3362	2	PLB1	2	28836923	Missense_Mutation	SNP	G	TCGA-OR-A5JP-01A-11D-A29I-10	1579873	28836923	214362450	24	3393										
ASPRV1	151516	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	70188127	70188127	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0538922155688623	9	0.929330005145667	1.15715672527235	2.25259842519685	0.586614173228346	0.419710144927536	1	0	gggctgcagggtgtccagatCgccatcagtgacctcctccc	12	15	1	2	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	ASPRV1-69	NM_152792	exon1	c.G694A	p.D232N	CCAGATCGCCATC	.	256	32	176	1	.	1	0	1	0	0	T	70188127	C	T	70188127	3	4	18	1	0	0	0	0	1	0	0	0	1059	884	31	1	341	1	ASPRV1	2	70188127	Missense_Mutation	SNP	C	TCGA-OR-A5JP-01A-11D-A29I-10	41351204	70188127	173011246	25	3394										
DNAH6	1768	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr2	84848429	84848429	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0538922155688623	9	0.929330005145667	1.15715672527235	2.25259842519685	0.586614173228346	0.419710144927536	1	0	gcaaagctgccatcgctgacTatcaggggaaactgaggaca	12	10	1	2	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	DNAH6-69	NM_001370	exon25	c.T3907A	p.Y1303N	GCTGACTATCAGG	.	261	17	191	0	.	0	0	0	0	0	A	84848429	T	A	84848429	3	1	18	1	0	0	0	0	1	0	0	0	4616	1522	53	5	4001	5	DNAH6	2	84848429	Missense_Mutation	SNP	T	TCGA-OR-A5JP-01A-11D-A29I-10	14660302	84848429	158350944	26	3395										
DPP10	57628	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	116447467	116447467	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0538922155688623	9	0.929330005145667	1.15715672527235	2.25259842519685	0.586614173228346	0.419710144927536	1	0	gaggactccgtcttgcagtaCgcggcctggggtgtccaagg	16	11	1	0	rs151071213	byfrequency	TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	DPP10-142	NM_001178034	exon7	c.C558T	p.Y186Y	GCAGTACGCGGCC	.	71	15	53	0	C|0.999;T|0.001	20	12	8	0	0	T	116447467	C	T	116447467	2	4	18	1	0	0	0	0	0	0	0	1	4738	547	19	1		1	DPP10	2	116447467	Silent	SNP	C	TCGA-OR-A5JP-01A-11D-A29I-10	31599038	116447467	126751906	27	3396										
LCT	3938	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	136590717	136590717	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0538922155688623	9	0.929330005145667	1.15715672527235	2.25259842519685	0.586614173228346	0.419710144927536	1	0	atgggtggttctagcaggagCtccgggatatcttcagctcg	14	9	3	0	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	LCT-101	NM_002299	exon2	c.G684C	p.E228D	CAGGAGCTCCGGG	.	46	7	41	0	.	0	0	0	0	0	G	136590717	C	G	136590717	3	3	18	1	0	0	0	0	1	0	0	0	8715	796	28	3	5163	3	LCT	2	136590717	Missense_Mutation	SNP	C	TCGA-OR-A5JP-01A-11D-A29I-10	20143250	136590717	106608656	28	3397										
CDCA7	83879	broad.mit.edu	37	chr2	174229648	174229648	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0538922155688623	9	0.929330005145667	1.15715672527235	2.25259842519685	0.586614173228346	0.419710144927536	1	0	tcccttgacgctctacccatGgaggaggaggaggaagagga	15	9	1	2	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	CDCA7-91	NM_031942	exon6	c.G825A	p.M275I	ACCCATGGAGGAG	.	71	3	51	0	.	1	1	0	0	0	A	174229648	G	A	174229648	3	1	18	1	0	0	0	0	1	0	0	0	3096	1348	47	3	847	3	CDCA7	2	174229648	Missense_Mutation	SNP	G	TCGA-OR-A5JP-01A-11D-A29I-10	37638931	174229648	68969725	29	3398										
DOCK10	55619	hgsc.bcm.edu;broad.mit.edu	37	chr2	225717140	225717141	+	Frame_Shift_Del	DEL	CA	CA	-													0.0538922155688623	9	0.929330005145667	1.15715672527235	2.25259842519685	0.586614173228346	0.419710144927536	1	0	ctgaatttttgaattcaatgCacacagttatattccgtgcc					novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	CA	CA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	DOCK10-92	NM_014689	exon18	c.2095_2096del	p.699_699del	TCAATGCACACAG	.	48	10	47	0	.	0	0	0	0	0	-	225717141	CA	-	225717140	7	5	18	1	0	1	0	1	0	0	0	0	4696	710	25	0	4620	0	DOCK10	2	225717140	Frame_Shift_Del	DEL	CA	TCGA-OR-A5JP-01A-11D-A29I-10	51487492	225717140	17482233	30	3399										
CCR3	1232	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	46306920	46306920	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0538922155688623	9	0.929330005145667	1.15715672527235	2.25259842519685	0.586614173228346	0.419710144927536	1	0	tcgtcacccttccattctggAtccactatgtcagggggcat	9	13	3	0	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	CCR3-660	NM_178328	exon3	c.A334C	p.I112L	TTCTGGATCCACT	.	287	109	336	0	.	0	0	0	0	0	C	46306920	A	C	46306920	3	2	18	1	0	0	0	0	1	0	0	0	2948	333	12	5	340	5	CCR3	3	46306920	Missense_Mutation	SNP	A	TCGA-OR-A5JP-01A-11D-A29I-10		46306920	151715510	31	3400										
ALS2CL	259173	bcgsc.ca	37	chr3	46729757	46729757	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0538922155688623	9	0.929330005145667	1.15715672527235	2.25259842519685	0.586614173228346	0.419710144927536	1	0	ttgcaagagccgcaggcactCtctgccccagggatccgagg	13	14	1	1	rs7642448	byfrequency	TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	ALS2CL-155	NM_001190707	exon3	c.G133C	p.E45Q	GGCACTCTCTGCC	.	85	5	108	0	C|0.587;G|0.413	0	0	0	0	0	G	46729757	C	G	46729757	3	3	18	1	0	0	0	0	1	0	0	0	551	922	32	3	2824	3	ALS2CL	3	46729757	Missense_Mutation	SNP	C	TCGA-OR-A5JP-01A-11D-A29I-10	422837	46729757	151292673	32	3401										
SLC25A26	115286	bcgsc.ca	37	chr3	66419942	66419942	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0538922155688623	9	0.929330005145667	1.15715672527235	2.25259842519685	0.586614173228346	0.419710144927536	1	0	accacccctctagacgtggcAaagacaagaattacgctggc	9	13	1	3	rs1129179	byfrequency	TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	SLC25A26-46	NM_173471	exon9	c.A609G	p.A203A	CGTGGCAAAGACA	.	167	7	155	0	A|0.869;G|0.131;T|0.000	19	19	0	0	0	G	66419942	A	G	66419942	2	3	18	1	0	0	0	0	0	0	0	1	14524	117	5	4		4	SLC25A26	3	66419942	Silent	SNP	A	TCGA-OR-A5JP-01A-11D-A29I-10	19690185	66419942	131602488	33	3402			1	13		2	2	15	N	C_A	7.552202e-05
SLC25A26	115286	bcgsc.ca	37	chr3	66419956	66419956	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0538922155688623	9	0.929330005145667	1.15715672527235	2.25259842519685	0.586614173228346	0.419710144927536	1	0	cgtggcaaagacaagaattaCgctggcaaaggtaagtggtg	14	6	0	2	rs13874	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	SLC25A26-46	NM_173471	exon9	c.C623T	p.T208M	GAATTACGCTGGC	.	174	9	163	0	C|0.342;T|0.658	0	0	0	0	0	T	66419956	C	T	66419956	3	4	18	1	0	0	0	0	1	0	0	0	14524	536	19	1	455	1	SLC25A26	3	66419956	Missense_Mutation	SNP	C	TCGA-OR-A5JP-01A-11D-A29I-10	14	66419956	131602474	34	3403			1	13		2	2	15	N	C_A	7.552202e-05
STX19	415117	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	93733581	93733581	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0538922155688623	9	0.929330005145667	1.15715672527235	2.25259842519685	0.586614173228346	0.419710144927536	1	0	tatcatttacatcttcttcaGacatctcttttccagcaact	2	12	5	1	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	STX19-90	NM_001001850	exon2	c.C533G	p.S178C	TCTTCAGACATCT	.	50	25	71	0	.	0	0	0	0	0	C	93733581	G	C	93733581	3	2	18	1	0	0	0	0	1	0	0	0	15379	942	33	3	355	3	STX19	3	93733581	Missense_Mutation	SNP	G	TCGA-OR-A5JP-01A-11D-A29I-10	27313625	93733581	104288849	35	3404										
SEC22A	26984	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	122990434	122990434	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0538922155688623	9	0.929330005145667	1.15715672527235	2.25259842519685	0.586614173228346	0.419710144927536	1	0	tttttgacttttggcttaatCtgtctatgcaacatgtatct	6	7	3	1	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	SEC22A-91	NM_012430	exon7	c.C789G	p.I263M	CTTAATCTGTCTA	.	45	9	47	0	.	14	14	0	0	0	G	122990434	C	G	122990434	3	3	18	1	0	0	0	0	1	0	0	0	14023	903	32	3	811	3	SEC22A	3	122990434	Missense_Mutation	SNP	C	TCGA-OR-A5JP-01A-11D-A29I-10	29256853	122990434	75031996	36	3405										
GHSR	2693	hgsc.bcm.edu	37	chr3	172166144	172166144	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0538922155688623	9	0.929330005145667	1.15715672527235	2.25259842519685	0.586614173228346	0.419710144927536	1	0	ttgccgggggaagcatcccaGtccaggtcggccagtgtgag	16	11	0	1	rs2232165	byfrequency	TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	GHSR-501	NM_198407	exon1	c.C60T	p.D20D	ATCCCAGTCCAGG	.	14	12	1	0	G|0.960;A|0.040	0	0	0	0	0	A	172166144	G	A	172166144	2	1	18	1	0	0	0	0	0	0	0	1	6395	1020	36	3		3	GHSR	3	172166144	Silent	SNP	G	TCGA-OR-A5JP-01A-11D-A29I-10	49175710	172166144	25856286	37	3406										
HTR3D	200909	broad.mit.edu	37	chr3	183753777	183753777	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0538922155688623	9	0.929330005145667	1.15715672527235	2.25259842519685	0.586614173228346	0.419710144927536	1	0	agacagaagccaccatgcccGgccttggcacaatcaatttg	9	13	1	2	rs36092077	byfrequency	TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	HTR3D-90	NM_001163646	exon3	c.G269A	p.R90Q	ATGCCCGGCCTTG	.	93	3	94	0	G|0.763;A|0.237	0	0	0	0	0	A	183753777	G	A	183753777	3	1	18	1	0	0	0	0	1	0	0	0	7468	1116	39	1	376	1	HTR3D	3	183753777	Missense_Mutation	SNP	G	TCGA-OR-A5JP-01A-11D-A29I-10	11587633	183753777	14268653	38	3407										
IDUA	3425	broad.mit.edu	37	chr4	996204	996204	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0538922155688623	9	0.929330005145667	1.15715672527235	2.25259842519685	0.586614173228346	0.419710144927536	1	0	cgcgcttccaggtcaacaacAcccgcccgccgcacgtgcag	10	19	1	0	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	IDUA-91	NM_000203	exon8	c.A1120C	p.T374P	AACAACACCCGCC	.	272	74	55	6	.	3	1	2	0	0	C	996204	A	C	996204	3	2	18	1	0	0	0	0	1	0	0	0	7525	159	6	5	1150	5	IDUA	4	996204	Missense_Mutation	SNP	A	TCGA-OR-A5JP-01A-11D-A29I-10		996204	190158072	39	3408										
CRIPAK	285464	hgsc.bcm.edu	37	chr4	1388755	1388755	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0538922155688623	9	0.929330005145667	1.15715672527235	2.25259842519685	0.586614173228346	0.419710144927536	1	0	cccgcctgctcacacgtgccCatgcggagtgcccgcctgct	11	19	1	0	rs141481663	byfrequency	TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	CRIPAK-90	NM_175918	exon1	c.C456G	p.P152P	CGTGCCCATGCGG	.	110	10	4	0	C|0.960;G|0.040	41	15	26	0	0	G	1388755	C	G	1388755	2	3	18	1	0	0	0	0	0	0	0	1	3883	581	21	3		3	CRIPAK	4	1388755	Silent	SNP	C	TCGA-OR-A5JP-01A-11D-A29I-10	392551	1388755	189765521	40	3409										
NSUN7	79730	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr4	40810424	40810426	+	In_Frame_Del	DEL	AGA	AGA	-													0.0538922155688623	9	0.929330005145667	1.15715672527235	2.25259842519685	0.586614173228346	0.419710144927536	1	0	gggtaaatcatcaaaacgggAgaagaagaagaaaaaatcaa					novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	AGA	AGA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	NSUN7-90	NM_024677	exon12	c.1625_1627del	p.542_543del	AACGGGAGAAGAA	.	120	25	150	0	.	0	0	0	0	0	-	40810426	AGA	-	40810424	7	5	18	1	0	1	0	1	0	0	0	0	10712	304	11	0	1667	0	NSUN7	4	40810424	In_Frame_Del	DEL	AGA	TCGA-OR-A5JP-01A-11D-A29I-10	39421669	40810424	150343852	41	3410										
EPHA5	2044	bcgsc.ca	37	chr4	66197804	66197804	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0538922155688623	9	0.929330005145667	1.15715672527235	2.25259842519685	0.586614173228346	0.419710144927536	1	0	tcacctactgatctgtaggcCccagatcctagtgggctatg	10	12	2	2	rs7349683	byfrequency	TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	EPHA5-1430	NM_004439	exon17	c.G2895A	p.G965G	GTAGGCCCCAGAT	.	46	4	44	0	C|0.704;T|0.296	0	0	0	0	0	T	66197804	C	T	66197804	2	4	18	1	0	0	0	0	0	0	0	1	5183	610	22	3		3	EPHA5	4	66197804	Silent	SNP	C	TCGA-OR-A5JP-01A-11D-A29I-10	25387380	66197804	124956472	42	3411										
ART3	419	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr4	77033649	77033649	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0538922155688623	9	0.929330005145667	1.15715672527235	2.25259842519685	0.586614173228346	0.419710144927536	1	0	ttttaatcagtgtttctgctAtaaatctctttgttgctctg	6	7	4	0	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	ART3-92	NM_001130016	exon12	c.A1147G	p.I383V	TCTGCTATAAATC	.	44	4	39	0	.	0	0	0	0	0	G	77033649	A	G	77033649	3	3	18	1	0	0	0	0	1	0	0	0	999	449	16	4	1189	4	ART3	4	77033649	Missense_Mutation	SNP	A	TCGA-OR-A5JP-01A-11D-A29I-10	10835845	77033649	114120627	43	3412										
COQ2	27235	bcgsc.ca	37	chr4	84191031	84191031	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0538922155688623	9	0.929330005145667	1.15715672527235	2.25259842519685	0.586614173228346	0.419710144927536	1	0	acctgatgggcataaatagtAtcatatattagtgtccacat	7	7	1	1	rs6535454	byfrequency	TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	COQ2-92	NM_015697	exon5	c.T894C	p.D298D	AATAGTATCATAT	.	115	7	145	1	A|0.215;G|0.785	32	32	0	0	0	G	84191031	A	G	84191031	2	3	18	1	0	0	0	0	0	0	0	1	3751	446	16	4		4	COQ2	4	84191031	Silent	SNP	A	TCGA-OR-A5JP-01A-11D-A29I-10	7157382	84191031	106963245	44	3413										
ENPEP	2028	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	111409785	111409785	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0538922155688623	9	0.929330005145667	1.15715672527235	2.25259842519685	0.586614173228346	0.419710144927536	1	0	acaaaaaggcaacttatacaAtatctatcacccatcccaaa	2	12	2	0	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	ENPEP-157	NM_001977	exon2	c.A733G	p.I245V	TATACAATATCTA	.	74	15	52	0	.	5	5	0	0	0	G	111409785	A	G	111409785	3	3	18	1	0	0	0	0	1	0	0	0	5141	101	4	4	739	4	ENPEP	4	111409785	Missense_Mutation	SNP	A	TCGA-OR-A5JP-01A-11D-A29I-10	27218754	111409785	79744491	45	3414										
TDO2	6999	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	156830150	156830150	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.0538922155688623	9	0.929330005145667	1.15715672527235	2.25259842519685	0.586614173228346	0.419710144927536	1	0	tggagacgatgacagccttgGacttcaatgacttcaggtgt	12	8	2	3	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	TDO2-514	NM_005651	exon5	c.G415C	p.D139H	GCCTTGGACTTCA	.	58	23	39	0	.	1	0	1	0	0	C	156830150	G	C	156830150	3	2	18	1	0	0	0	0	1	0	0	0	15764	1174	41	3	433	3	TDO2	4	156830150	Missense_Mutation	SNP	G	TCGA-OR-A5JP-01A-11D-A29I-10	45420365	156830150	34324126	46	3415										
IRX4	50805	hgsc.bcm.edu	37	chr5	1882129	1882129	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0538922155688623	9	0.929330005145667	1.15715672527235	2.25259842519685	0.586614173228346	0.419710144927536	1	0	gagtccgccagcgtgcggccTccggactcgcagcacgtgct	14	16	0	0	rs2232374	byfrequency	TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	IRX4-226	NM_016358	exon2	c.A90C	p.G30G	GCGGCCTCCGGAC	.	8	8	0	0	T|0.735;G|0.265	0	0	0	0	0	G	1882129	T	G	1882129	2	3	18	1	0	0	0	0	0	0	0	1	7867	1538	54	5		5	IRX4	5	1882129	Silent	SNP	T	TCGA-OR-A5JP-01A-11D-A29I-10		1882129	179033131	47	3416										
PDE4D	5144	ucsc.edu	37	chr5	58284356	58284356	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0538922155688623	9	0.929330005145667	1.15715672527235	2.25259842519685	0.586614173228346	0.419710144927536	1	0	ttgattggacacaccaggatGatctacatcatgtattgcac	8	9	2	2	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	PDE4D-226	NM_001104631	exon11	c.C1516A	p.H506N	CAGGATGATCTAC	.	51	4	32	0	.	0	0	0	0	0	T	58284356	G	T	58284356	3	4	18	1	0	0	0	0	1	0	0	0	11671	1290	45	3	933	3	PDE4D	5	58284356	Missense_Mutation	SNP	G	TCGA-OR-A5JP-01A-11D-A29I-10	56402227	58284356	122630904	48	3417										
PDLIM4	8572	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	131607853	131607853	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0538922155688623	9	0.929330005145667	1.15715672527235	2.25259842519685	0.586614173228346	0.419710144927536	1	0	tgtgagagccacgccaaggcGcgcgtgaagccgcccgaggg	17	13	0	2	rs1140552	bycluster	TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	PDLIM4-91	NM_003687	exon7	c.G924A	p.A308A	CAAGGCGCGCGTG	.	206	55	116	0	G|1.000;A|0.000	0	0	0	0	0	A	131607853	G	A	131607853	2	1	18	1	0	0	0	0	0	0	0	1	11711	1074	38	1		1	PDLIM4	5	131607853	Silent	SNP	G	TCGA-OR-A5JP-01A-11D-A29I-10	73323497	131607853	49307407	49	3418										
RAD50	10111	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr5	131940646	131940647	+	Frame_Shift_Del	DEL	TG	TG	-													0.0538922155688623	9	0.929330005145667	1.15715672527235	2.25259842519685	0.586614173228346	0.419710144927536	1	0	cagcaactggaggagcagacTgtggaattatccactgaagt					novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	TG	TG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	RAD50-229	NM_005732	exon16	c.2673_2674del	p.891_892del	GCAGACTGTGGAA	.	169	41	175	0	.	0	0	0	0	0	-	131940647	TG	-	131940646	7	5	18	1	0	1	0	1	0	0	0	0	13019	1567	55	0	2735	0	RAD50	5	131940646	Frame_Shift_Del	DEL	TG	TCGA-OR-A5JP-01A-11D-A29I-10	332793	131940646	48974614	50	3419										
PCDHB4	56131	ucsc.edu	37	chr5	140503237	140503237	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0538922155688623	9	0.929330005145667	1.15715672527235	2.25259842519685	0.586614173228346	0.419710144927536	1	0	tgcgcgtgctggtgctggacAccaacgacaactcgcccttc	11	15	0	0	rs78271884		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	PCDHB4-93	NM_018938	exon1	c.A1657G	p.T553A	CTGGACACCAACG	.	232	131	13	0	G|1.000;|0.000	118	4	114	0	0	G	140503237	A	G	140503237	3	3	18	1	0	0	0	0	1	0	0	0	11573	159	6	4	1659	4	PCDHB4	5	140503237	Missense_Mutation	SNP	A	TCGA-OR-A5JP-01A-11D-A29I-10	8562591	140503237	40412023	51	3420										
RBM27	54439	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	145631438	145631438	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0538922155688623	9	0.929330005145667	1.15715672527235	2.25259842519685	0.586614173228346	0.419710144927536	1	0	gccctacccctctggttccaGgtaagctttgctacagatgg	10	13	1	1	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	RBM27-70	NM_018989	exon9	c.G1444C	p.D482H	GTTCCAGGTAAGC	.	98	28	66	0	.	0	0	0	0	0	C	145631438	G	C	145631438	3	2	18	1	0	0	0	0	1	0	0	0	13162	1014	35	3	1478	3	RBM27	5	145631438	Missense_Mutation	SNP	G	TCGA-OR-A5JP-01A-11D-A29I-10	5128201	145631438	35283822	52	3421										
F13A1	2162	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	6175004	6175004	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0538922155688623	9	0.929330005145667	1.15715672527235	2.25259842519685	0.586614173228346	0.419710144927536	1	0	ccacttcaaagtccatgtcaAcgttggaccttgatttcatg	7	11	3	1	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	F13A1-519	NM_000129	exon12	c.T1556C	p.V519A	ATGTCAACGTTGG	.	309	83	271	0	.	0	0	0	0	0	G	6175004	A	G	6175004	3	3	18	1	0	0	0	0	1	0	0	0	5353	43	2	4	658	4	F13A1	6	6175004	Missense_Mutation	SNP	A	TCGA-OR-A5JP-01A-11D-A29I-10		6175004	164940063	53	3422										
TMEM14B	81853	ucsc.edu	37	chr6	10756728	10756728	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0538922155688623	9	0.929330005145667	1.15715672527235	2.25259842519685	0.586614173228346	0.419710144927536	1	0	tggccgccaaagttggagttCgtatgttgatgacatctgat	12	7	1	3	rs72821581	byfrequency	TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	TMEM14B-90	NM_030969	exon6	c.C322T	p.R108C	GGAGTTCGTATGT	.	163	26	126	4	C|0.960;T|0.040	78	78	0	0	0	T	10756728	C	T	10756728	3	4	18	1	0	0	0	0	1	0	0	0	16101	884	31	1	340	1	TMEM14B	6	10756728	Missense_Mutation	SNP	C	TCGA-OR-A5JP-01A-11D-A29I-10	4581724	10756728	160358339	54	3423										
HLA-A	3105	hgsc.bcm.edu	37	chr6	29910566	29910566	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0538922155688623	9	0.929330005145667	1.15715672527235	2.25259842519685	0.586614173228346	0.419710144927536	1	0	tgaggtatttcttcacatccGtgtcccggcccggccgcggg	13	14	2	1	rs41545116	byfrequency	TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	HLA-A-92	NM_001242758	exon2	c.G106A	p.V36M	ACATCCGTGTCCC	.	208	17	22	0	A|0.077;G|0.923	2	1	0	1	0	A	29910566	G	A	29910566	3	1	18	1	0	0	0	0	1	0	0	0	7216	1145	40	1	112	1	HLA-A	6	29910566	Missense_Mutation	SNP	G	TCGA-OR-A5JP-01A-11D-A29I-10	19153838	29910566	141204501	55	3424										
RNF39	80352	hgsc.bcm.edu	37	chr6	30039364	30039364	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0538922155688623	9	0.929330005145667	1.15715672527235	2.25259842519685	0.586614173228346	0.419710144927536	1	0	ctgatcgaagcgcttggggcCgtcagggggcgcgggcgtcc	19	12	1	1	rs11753382		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	RNF39-226	NM_025236	exon4	c.G787T	p.G263C	TGGGGCCGTCAGG	.	8	6	2	0	C|0.862;A|0.138	3	3	0	0	0	A	30039364	C	A	30039364	3	1	18	1	0	0	0	0	1	0	0	0	13526	652	23	2	479	2	RNF39	6	30039364	Missense_Mutation	SNP	C	TCGA-OR-A5JP-01A-11D-A29I-10	128798	30039364	141075703	56	3425										
NOTCH4	4855	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	32166275	32166275	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0538922155688623	9	0.929330005145667	1.15715672527235	2.25259842519685	0.586614173228346	0.419710144927536	1	0	gcatggctgcctgagggagcGccccacagccaccactcaga	12	16	1	2	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	NOTCH4-1321	NM_004557	exon26	c.C4679T	p.A1560V	GGGAGCGCCCCAC	.	79	27	65	0	.	2	2	0	0	0	A	32166275	G	A	32166275	3	1	18	1	0	0	0	0	1	0	0	0	10580	1087	38	1	1352	1	NOTCH4	6	32166275	Missense_Mutation	SNP	G	TCGA-OR-A5JP-01A-11D-A29I-10	2126911	32166275	138948792	57	3426										
HLA-DRB1	3123	bcgsc.ca	37	chr6	32557461	32557461	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0538922155688623	9	0.929330005145667	1.15715672527235	2.25259842519685	0.586614173228346	0.419710144927536	1	0	ccagtggggagctcagcaccAtcagtgtcactgtcagcgct	12	13	4	0	rs35053532	byfrequency	TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	HLA-DRB1-1	NM_002124	exon1	c.T59C	p.M20T	AGCACCATCAGTG	.	468	25	340	10	A|0.986;G|0.013	43	43	0	0	0	G	32557461	A	G	32557461	3	3	18	1	0	0	0	0	1	0	0	0	7229	217	8	4	765	4	HLA-DRB1	6	32557461	Missense_Mutation	SNP	A	TCGA-OR-A5JP-01A-11D-A29I-10	391186	32557461	138557606	58	3427										
PEX6	5190	hgsc.bcm.edu	37	chr6	42946490	42946490	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0538922155688623	9	0.929330005145667	1.15715672527235	2.25259842519685	0.586614173228346	0.419710144927536	1	0	tccagcacccgcggtccgggCactgggagggtctctccgcg	15	16	1	0	rs9462858	byfrequency	TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	PEX6-91	NM_000287	exon1	c.G399T	p.V133V	TCCGGGCACTGGG	.	7	6	0	0	C|0.673;A|0.327	5	1	4	0	0	A	42946490	C	A	42946490	2	1	18	1	0	0	0	0	0	0	0	1	11779	697	25	3		3	PEX6	6	42946490	Silent	SNP	C	TCGA-OR-A5JP-01A-11D-A29I-10	10389029	42946490	128168577	59	3428										
FBXO9	26268	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	52960318	52960318	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0538922155688623	9	0.929330005145667	1.15715672527235	2.25259842519685	0.586614173228346	0.419710144927536	1	0	ttttcttttgcagaaaccacTtgactataaatacagatatt	4	7	1	3	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	FBXO9-227	NM_012347	exon11	c.T1091G	p.L364R	AACCACTTGACTA	.	56	7	50	0	.	0	0	0	0	0	G	52960318	T	G	52960318	3	3	18	1	0	0	0	0	1	0	0	0	5781	1609	56	5	1140	5	FBXO9	6	52960318	Missense_Mutation	SNP	T	TCGA-OR-A5JP-01A-11D-A29I-10	10013828	52960318	118154749	60	3429										
FAM46A	55603	broad.mit.edu	37	chr6	82461728	82461742	+	In_Frame_Del	DEL	CCGCCGAAGTCGCCG	CCGCCGAAGTCGCCG	-													0.0538922155688623	9	0.929330005145667	1.15715672527235	2.25259842519685	0.586614173228346	0.419710144927536	1	0	gcccaccgaagctgccgccaCcgccgaagtcgccgccgccg					novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	FAM46A-90	NM_017633	exon2	c.117_131del	p.39_44del	CCGCCACCGCCGA	.	109	9	19	0	.	0	0	0	0	0	-	82461742	CCGCCGAAGTCGCCG	-	82461728	7	5	18	1	0	1	0	1	0	0	0	0	5584	507	18	0	1205	0	FAM46A	6	82461728	In_Frame_Del	DEL	CCGCCGAAGTCGCCG	TCGA-OR-A5JP-01A-11D-A29I-10	29501410	82461728	88653339	61	3430										
IBTK	25998	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	82921272	82921272	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0538922155688623	9	0.929330005145667	1.15715672527235	2.25259842519685	0.586614173228346	0.419710144927536	1	0	catccactgatttcatggtcAcgtcacacagaaatgaactg	7	11	3	3	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	IBTK-92	NM_015525	exon14	c.T2309G	p.V770G	ATGGTCACGTCAC	.	299	67	340	0	.	14	8	6	0	0	C	82921272	A	C	82921272	3	2	18	1	0	0	0	0	1	0	0	0	7497	159	6	5	1816	5	IBTK	6	82921272	Missense_Mutation	SNP	A	TCGA-OR-A5JP-01A-11D-A29I-10	459544	82921272	88193795	62	3431										
FAM184A	79632	hgsc.bcm.edu;bcgsc.ca	37	chr6	119337933	119337933	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0538922155688623	9	0.929330005145667	1.15715672527235	2.25259842519685	0.586614173228346	0.419710144927536	1	0	atttgcagttttttcttatcCctaattgcattactgtggac	6	8	1	0	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	FAM184A-519	NM_024581	exon5	c.G1509T	p.R503S	CTTATCCCTAATT	.	76	4	66	0	.	2	2	0	0	0	A	119337933	C	A	119337933	3	1	18	1	0	0	0	0	1	0	0	0	5527	622	22	3	1969	3	FAM184A	6	119337933	Missense_Mutation	SNP	C	TCGA-OR-A5JP-01A-11D-A29I-10	36416661	119337933	51777134	63	3432										
SLC2A12	154091	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	134373567	134373567	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0538922155688623	9	0.929330005145667	1.15715672527235	2.25259842519685	0.586614173228346	0.419710144927536	1	0	gccctccgtctccacggctgTccccttctggttcagcagac	9	18	3	1	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	SLC2A12-91	NM_145176	exon1	c.A52T	p.T18S	CGGCTGTCCCCTT	.	52	16	42	0	.	0	0	0	0	0	A	134373567	T	A	134373567	3	1	18	1	0	0	0	0	1	0	0	0	14576	1667	58	5	1821	5	SLC2A12	6	134373567	Missense_Mutation	SNP	T	TCGA-OR-A5JP-01A-11D-A29I-10	15035634	134373567	36741500	64	3433										
ZFAND2A	90637	bcgsc.ca	37	chr7	1195215	1195215	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0538922155688623	9	0.929330005145667	1.15715672527235	2.25259842519685	0.586614173228346	0.419710144927536	1	0	agtgggcatactgggacgtgAacatcctaaaaataacaaag	10	7	0	1	rs1133116	byfrequency	TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	ZFAND2A-69	NM_182491	exon4	c.T156G	p.V52V	GACGTGAACATCC	.	101	6	78	0	A|0.857;C|0.143	1	1	0	0	0	C	1195215	A	C	1195215	2	2	18	1	0	0	0	0	0	0	0	1	17664	233	9	5		5	ZFAND2A	7	1195215	Silent	SNP	A	TCGA-OR-A5JP-01A-11D-A29I-10		1195215	157943448	65	3434										
ETV1	2115	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr7	13971355	13971355	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0538922155688623	9	0.929330005145667	1.15715672527235	2.25259842519685	0.586614173228346	0.419710144927536	1	0	aggaaaggagttacagggttCagaaagctggcggcgaaatc	15	6	1	1	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	ETV1-659	NM_004956	exon9	c.G574A	p.E192K	AGGGTTCAGAAAG	.	267	18	250	0	.	5	5	0	0	0	T	13971355	C	T	13971355	3	4	18	1	0	0	0	0	1	0	0	0	5290	835	29	3	883	3	ETV1	7	13971355	Missense_Mutation	SNP	C	TCGA-OR-A5JP-01A-11D-A29I-10	12776140	13971355	145167308	66	3435										
AMPH	273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	38466556	38466556	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0538922155688623	9	0.929330005145667	1.15715672527235	2.25259842519685	0.586614173228346	0.419710144927536	1	0	agaaaacagattccttacctGtgtgaatccattaaatgaac	6	8	0	4	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	AMPH-95	NM_139316	exon15	c.C1213G	p.Q405E	TTACCTGTGTGAA	.	118	20	144	0	.	0	0	0	0	0	C	38466556	G	C	38466556	3	2	18	1	0	0	0	0	1	0	0	0	588	1386	48	3	902	3	AMPH	7	38466556	Missense_Mutation	SNP	G	TCGA-OR-A5JP-01A-11D-A29I-10	24495201	38466556	120672107	67	3436										
GLI3	2737	bcgsc.ca	37	chr7	42079765	42079765	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0538922155688623	9	0.929330005145667	1.15715672527235	2.25259842519685	0.586614173228346	0.419710144927536	1	0	tgaaggtcaaagctatgatcGgagagtggtgatatggacag	15	4	1	4	rs35961850	byfrequency;alternate_allele	TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	GLI3-1149	NM_000168	exon7	c.C900G	p.S300S	ATGATCGGAGAGT	.	280	10	247	0	G|0.931;A|0.069	1	1	0	0	0	C	42079765	G	C	42079765	2	2	18	1	0	0	0	0	0	0	0	1	6459	1103	39	2		2	GLI3	7	42079765	Silent	SNP	G	TCGA-OR-A5JP-01A-11D-A29I-10	3613209	42079765	117058898	68	3437										
ZMIZ2	83637	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	44800087	44800087	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0538922155688623	9	0.929330005145667	1.15715672527235	2.25259842519685	0.586614173228346	0.419710144927536	1	0	ggaaccccacgccacccatgAccccaagcagcagcgtccct	8	20	0	1	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	ZMIZ2-137	NM_031449	exon9	c.A1135T	p.T379S	CCCATGACCCCAA	.	320	45	247	0	.	9	9	0	0	0	T	44800087	A	T	44800087	3	4	18	1	0	0	0	0	1	0	0	0	17734	275	10	5	1165	5	ZMIZ2	7	44800087	Missense_Mutation	SNP	A	TCGA-OR-A5JP-01A-11D-A29I-10	2720322	44800087	114338576	69	3438										
ZNF804B	219578	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	88964602	88964602	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0538922155688623	9	0.929330005145667	1.15715672527235	2.25259842519685	0.586614173228346	0.419710144927536	1	0	cttctacttgtctgatgataTaacaaagagcagccaaatgc	7	9	2	3	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	ZNF804B-101	NM_181646	exon4	c.T2306C	p.I769T	ATGATATAACAAA	.	220	68	202	0	.	0	0	0	0	0	C	88964602	T	C	88964602	3	2	18	1	0	0	0	0	1	0	0	0	18208	1406	49	4	2320	4	ZNF804B	7	88964602	Missense_Mutation	SNP	T	TCGA-OR-A5JP-01A-11D-A29I-10	44164515	88964602	70174061	70	3439										
WNT16	51384	bcgsc.ca	37	chr7	120979089	120979089	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0538922155688623	9	0.929330005145667	1.15715672527235	2.25259842519685	0.586614173228346	0.419710144927536	1	0	tatccagatatcagacaaaaCaaagaggaaaatgcgcagga	9	7	1	3	rs2707466	byfrequency	TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	WNT16-1011	NM_057168	exon4	c.C788T	p.T263I	ACAAAACAAAGAG	.	72	6	95	1	C|0.462;T|0.538	1	1	0	0	0	T	120979089	C	T	120979089	3	4	18	1	0	0	0	0	1	0	0	0	17423	478	17	3	871	3	WNT16	7	120979089	Missense_Mutation	SNP	C	TCGA-OR-A5JP-01A-11D-A29I-10	32014487	120979089	38159574	71	3440										
WDR91	29062	bcgsc.ca	37	chr7	134871775	134871775	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0538922155688623	9	0.929330005145667	1.15715672527235	2.25259842519685	0.586614173228346	0.419710144927536	1	0	gtcagcatgtaatttccctcCgagtcaaaagcgaagagtcg	10	10	2	1	rs292557	byfrequency	TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	WDR91-137	NM_014149	exon14	c.G2028A	p.S676S	TCCCTCCGAGTCA	.	131	5	135	0	C|0.315;N|0.000	4	4	0	0	0	T	134871775	C	T	134871775	2	4	18	1	0	0	0	0	0	0	0	1	17376	639	23	1		1	WDR91	7	134871775	Silent	SNP	C	TCGA-OR-A5JP-01A-11D-A29I-10	13892686	134871775	24266888	72	3441										
DERL1	79139	bcgsc.ca	37	chr8	124031541	124031541	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0538922155688623	9	0.929330005145667	1.15715672527235	2.25259842519685	0.586614173228346	0.419710144927536	1	0	atttccaataagctcattgaTtaccctgcaaagagagccaa	6	10	1	2	rs2272722	byfrequency	TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	DERL1-226	NM_024295	exon7	c.A511G	p.I171V	CATTGATTACCCT	.	52	4	62	0	T|0.926;C|0.074	0	0	0	0	0	C	124031541	T	C	124031541	3	2	18	1	0	0	0	0	1	0	0	0	4457	1493	52	4	252	4	DERL1	8	124031541	Missense_Mutation	SNP	T	TCGA-OR-A5JP-01A-11D-A29I-10		124031541	22332481	73	3442										
ZNF696	79943	hgsc.bcm.edu	37	chr8	144378868	144378868	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0538922155688623	9	0.929330005145667	1.15715672527235	2.25259842519685	0.586614173228346	0.419710144927536	1	0	ggcttcttccggcaccagcgActccacacgggcgagaagcc	12	16	1	1	rs7386259	byfrequency	TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	ZNF696-90	NM_030895	exon3	c.A1023G	p.R341R	CCAGCGACTCCAC	.	11	9	0	0	A|0.118;G|0.882	4	0	4	0	0	G	144378868	A	G	144378868	2	3	18	1	0	0	0	0	0	0	0	1	18136	262	10	4		4	ZNF696	8	144378868	Silent	SNP	A	TCGA-OR-A5JP-01A-11D-A29I-10	20347327	144378868	1985154	74	3443										
TSTA3	7264	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr8	144695922	144695922	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0538922155688623	9	0.929330005145667	1.15715672527235	2.25259842519685	0.586614173228346	0.419710144927536	1	0	tgagggctgaggtacccaccGgagaggatgatgggctccac	16	10	0	4	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	TSTA3-91	NM_003313	exon8	c.C729T	p.S243S	CCCACCGGAGAGG	.	223	49	128	0	.	1	0	1	0	0	A	144695922	G	A	144695922	2	1	18	1	0	0	0	0	0	0	0	1	16712	1130	39	1		1	TSTA3	8	144695922	Silent	SNP	G	TCGA-OR-A5JP-01A-11D-A29I-10	317054	144695922	1668100	75	3444										
DDX58	23586	bcgsc.ca	37	chr9	32487537	32487537	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0538922155688623	9	0.929330005145667	1.15715672527235	2.25259842519685	0.586614173228346	0.419710144927536	1	0	tgactgttgctatcactgacGcatcaagagaagcacacagc	9	11	2	3	rs139635230	alternate_allele	TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	DDX58-230	NM_014314	exon9	c.C1307A	p.A436E	ACTGACGCATCAA	.	128	5	178	0	G|1.000;A|0.000	1	1	0	0	0	T	32487537	G	T	32487537	3	4	18	1	0	0	0	0	1	0	0	0	4381	1087	38	2	1510	2	DDX58	9	32487537	Missense_Mutation	SNP	G	TCGA-OR-A5JP-01A-11D-A29I-10		32487537	108725894	76	3445										
BAG1	573	hgsc.bcm.edu	37	chr9	33264540	33264540	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0538922155688623	9	0.929330005145667	1.15715672527235	2.25259842519685	0.586614173228346	0.419710144927536	1	0	actccgggcaggtggacgccCagagggaggcggaccacgct	17	13	0	1	rs1071545		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	BAG1-228	NM_004323	exon1	c.G133C	p.G45R	GACGCCCAGAGGG	.	4	4	0	0	C|0.976;G|0.024	20	0	20	0	0	G	33264540	C	G	33264540	3	3	18	1	0	0	0	0	1	0	0	0	1287	594	21	3	932	3	BAG1	9	33264540	Missense_Mutation	SNP	C	TCGA-OR-A5JP-01A-11D-A29I-10	777003	33264540	107948891	77	3446										
OR2S2	56656	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	35958062	35958062	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0538922155688623	9	0.929330005145667	1.15715672527235	2.25259842519685	0.586614173228346	0.419710144927536	1	0	gagcctcaggagaacgaaccCcatcacaggggaggtctcat	12	12	3	1	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	OR2S2-68	NM_019897	exon1	c.G34C	p.G12R	CGAACCCCATCAC	.	104	13	102	0	.	0	0	0	0	0	G	35958062	C	G	35958062	3	3	18	1	0	0	0	0	1	0	0	0	11044	623	22	3	929	3	OR2S2	9	35958062	Missense_Mutation	SNP	C	TCGA-OR-A5JP-01A-11D-A29I-10	2693522	35958062	105255369	78	3447										
ZCCHC6	79670	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr9	88954993	88954994	+	Frame_Shift_Del	DEL	AA	AA	-													0.0538922155688623	9	0.929330005145667	1.15715672527235	2.25259842519685	0.586614173228346	0.419710144927536	1	0	ccactggcaccctagcatggAagtctgcatcaacatcaata					novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	AA	AA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	ZCCHC6-92	NM_024617	exon8	c.1165_1166del	p.389_389del	GCATGGAAGTCTG	.	53	17	64	0	.	0	0	0	0	0	-	88954994	AA	-	88954993	7	5	18	1	0	1	0	1	0	0	0	0	17629	246	9	0	3401	0	ZCCHC6	9	88954993	Frame_Shift_Del	DEL	AA	TCGA-OR-A5JP-01A-11D-A29I-10	52996931	88954993	52258438	79	3448										
WDR34	89891	hgsc.bcm.edu	37	chr9	131418828	131418828	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0538922155688623	9	0.929330005145667	1.15715672527235	2.25259842519685	0.586614173228346	0.419710144927536	1	0	ccgcgccctcaccgtctcccAgcggatgccctggacggccc	11	21	2	0	rs4837292		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	WDR34-92	NM_052844	exon1	c.T178G	p.W60G	TCTCCCAGCGGAT	.	6	6	0	0	A|0.006;C|0.994	0	0	0	0	0	C	131418828	A	C	131418828	3	2	18	1	0	0	0	0	1	0	0	0	17326	188	7	5	1468	5	WDR34	9	131418828	Missense_Mutation	SNP	A	TCGA-OR-A5JP-01A-11D-A29I-10	42463835	131418828	9794603	80	3449										
FUBP3	8939	bcgsc.ca	37	chr9	133501801	133501802	+	Frame_Shift_Ins	INS	-	-	CGTGGCGACTGGAG													0.0538922155688623	9	0.929330005145667	1.15715672527235	2.25259842519685	0.586614173228346	0.419710144927536	1	0	ccagaggaagaggtcgtggcINScgtggcgactggagcgtggg					novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	FUBP3-69	NM_003934	exon12	c.1026_1027insCGTGGCGACTGGAG	p.G342fs	TCGTGGCCGTGGC	.	111	4	88	0	.	0	0	0	0	0	CGTGGCGACTGGAG	133501802	-	CGTGGCGACTGGAG	133501801	7	5	18	1	0	1	1	0	0	0	0	0	6112	726	26	0	1072	0	FUBP3	9	133501801	Frame_Shift_Ins	INS	-	TCGA-OR-A5JP-01A-11D-A29I-10	2082973	133501801	7711630	81	3450										
SURF2	6835	hgsc.bcm.edu	37	chr9	136223541	136223541	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0538922155688623	9	0.929330005145667	1.15715672527235	2.25259842519685	0.586614173228346	0.419710144927536	1	0	tgcggctccagacggacgccCgcaaggttcgcagcgcggga	16	14	0	1	rs143037947		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	SURF2-226	NM_017503	exon1	c.C73T	p.R25C	GACGCCCGCAAGG	.	15	7	1	0	C|0.971;T|0.029	0	0	0	0	0	T	136223541	C	T	136223541	3	4	18	1	0	0	0	0	1	0	0	0	15441	652	23	1	75	1	SURF2	9	136223541	Missense_Mutation	SNP	C	TCGA-OR-A5JP-01A-11D-A29I-10	2721740	136223541	4989890	82	3451										
DBH	1621	hgsc.bcm.edu;bcgsc.ca	37	chr9	136501584	136501584	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0538922155688623	9	0.929330005145667	1.15715672527235	2.25259842519685	0.586614173228346	0.419710144927536	1	0	cagcagtggccatcttcctgGtcatcctggtggccgcactg	12	14	2	0	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	DBH-516	NM_000787	exon1	c.G91T	p.V31F	TTCCTGGTCATCC	.	100	5	36	0	.	0	0	0	0	0	T	136501584	G	T	136501584	3	4	18	1	0	0	0	0	1	0	0	0	4256	1261	44	3	93	3	DBH	9	136501584	Missense_Mutation	SNP	G	TCGA-OR-A5JP-01A-11D-A29I-10	278043	136501584	4711847	83	3452										
ENTPD2	954	hgsc.bcm.edu	37	chr9	139943400	139943400	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0538922155688623	9	0.929330005145667	1.15715672527235	2.25259842519685	0.586614173228346	0.419710144927536	1	0	cgccccagcccaccttcttcTggaagatcacgccgccgaag	9	18	3	1	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	ENTPD2-90	NM_203468	exon8	c.A1277T	p.Q426L	TTCTTCTGGAAGA	.	21	21	6	0	.	0	0	0	0	0	A	139943400	T	A	139943400	3	1	18	1	0	0	0	0	1	0	0	0	5152	1580	55	5	218	5	ENTPD2	9	139943400	Missense_Mutation	SNP	T	TCGA-OR-A5JP-01A-11D-A29I-10	3441816	139943400	1270031	84	3453										
BICC1	80114	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr10	60273078	60273078	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0538922155688623	9	0.929330005145667	1.15715672527235	2.25259842519685	0.586614173228346	0.419710144927536	1	0	gcgtggacaggaagaaacttGaggccatgttacaaggtagg	15	6	0	2	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	BICC1-72	NM_001080512	exon1	c.G175T	p.E59X	AAACTTGAGGCCA	.	477	24	186	0	.	0	0	0	0	0	T	60273078	G	T	60273078	4	4	18	1	0	0	0	0	0	1	0	0	1428	1291	45	3	177	3	BICC1	10	60273078	Nonsense_Mutation	SNP	G	TCGA-OR-A5JP-01A-11D-A29I-10		60273078	75261669	85	3454										
SFTPD	6441	bcgsc.ca	37	chr10	81697756	81697756	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0538922155688623	9	0.929330005145667	1.15715672527235	2.25259842519685	0.586614173228346	0.419710144927536	1	0	agaccagggactctcctgtgGggtaggtgaacttgccctct	13	11	2	2	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	SFTPD-91	NM_003019	exon8	c.C980T	p.P327L	CCTGTGGGGTAGG	.	141	6	90	0	.	0	0	0	0	0	A	81697756	G	A	81697756	3	1	18	1	0	0	0	0	1	0	0	0	14228	1232	43	3	151	3	SFTPD	10	81697756	Missense_Mutation	SNP	G	TCGA-OR-A5JP-01A-11D-A29I-10	21424678	81697756	53836991	86	3455										
KIF11	3832	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr10	94397209	94397209	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0538922155688623	9	0.929330005145667	1.15715672527235	2.25259842519685	0.586614173228346	0.419710144927536	1	0	tgtaacaatctacatgaactAcaagaaaataccatttgttc	4	8	1	2	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	KIF11-227	NM_004523	exon16	c.A2067G	p.L689L	TGAACTACAAGAA	.	212	17	155	0	.	4	4	0	0	0	G	94397209	A	G	94397209	2	3	18	1	0	0	0	0	0	0	0	1	8293	378	14	4		4	KIF11	10	94397209	Silent	SNP	A	TCGA-OR-A5JP-01A-11D-A29I-10	12699453	94397209	41137538	87	3456										
CYP2C8	1558	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	96802824	96802824	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0538922155688623	9	0.929330005145667	1.15715672527235	2.25259842519685	0.586614173228346	0.419710144927536	1	0	attacatgatcaatctcttcCtggactttagctgacaagac	6	10	2	3	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	CYP2C8-90	NM_000770	exon7	c.G972A	p.Q324Q	CTCTTCCTGGACT	.	224	44	137	1	.	0	0	0	0	0	T	96802824	C	T	96802824	2	4	18	1	0	0	0	0	0	0	0	1	4173	680	24	3		3	CYP2C8	10	96802824	Silent	SNP	C	TCGA-OR-A5JP-01A-11D-A29I-10	2405615	96802824	38731923	88	3457										
PIK3AP1	118788	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr10	98408466	98408466	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0538922155688623	9	0.929330005145667	1.15715672527235	2.25259842519685	0.586614173228346	0.419710144927536	1	0	cctgaagccgtgtttctcagCgatggtgttggggtagtggc	16	8	1	1	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	PIK3AP1-519	NM_152309	exon7	c.G1135T	p.A379S	TCTCAGCGATGGT	.	295	60	150	0	.	0	0	0	0	0	A	98408466	C	A	98408466	3	1	18	1	0	0	0	0	1	0	0	0	11937	768	27	2	1326	2	PIK3AP1	10	98408466	Missense_Mutation	SNP	C	TCGA-OR-A5JP-01A-11D-A29I-10	1605642	98408466	37126281	89	3458										
PPRC1	23082	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	103901266	103901266	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.0538922155688623	9	0.929330005145667	1.15715672527235	2.25259842519685	0.586614173228346	0.419710144927536	1	0	ggtctactgttcccccacctCctttgcctccagcctccatt	5	19	1	0	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	PPRC1-227	NM_015062	exon5	c.C3001G	p.P1001A	CCACCTCCTTTGC	.	95	10	85	0	.	10	6	4	0	0	G	103901266	C	G	103901266	3	3	18	1	0	0	0	0	1	0	0	0	12442	855	30	3	3019	3	PPRC1	10	103901266	Missense_Mutation	SNP	C	TCGA-OR-A5JP-01A-11D-A29I-10	5492800	103901266	31633481	90	3459										
NFKB2	4791	hgsc.bcm.edu	37	chr10	104159196	104159196	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0538922155688623	9	0.929330005145667	1.15715672527235	2.25259842519685	0.586614173228346	0.419710144927536	1	0	ggggaggaagccgcggagccAagcgccccctccaggacccc	15	17	0	0	rs4919633	byfrequency	TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	NFKB2-522	NM_001077494	exon13	c.A1269G	p.P423P	GGAGCCAAGCGCC	.	5	5	0	0	A|0.009;G|0.991	11	0	11	0	0	G	104159196	A	G	104159196	2	3	18	1	0	0	0	0	0	0	0	1	10405	117	5	4		4	NFKB2	10	104159196	Silent	SNP	A	TCGA-OR-A5JP-01A-11D-A29I-10	257930	104159196	31375551	91	3460										
MKI67	4288	bcgsc.ca	37	chr10	129901747	129901747	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0538922155688623	9	0.929330005145667	1.15715672527235	2.25259842519685	0.586614173228346	0.419710144927536	1	0	tttccctgggtgctcttggcCgtctcctgctgccagttaca	10	14	2	0	rs10764749	byfrequency	TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	MKI67-519	NM_002417	exon13	c.G8357A	p.R2786Q	CTTGGCCGTCTCC	.	66	5	54	0	C|0.808;T|0.192	6	6	0	0	0	T	129901747	C	T	129901747	3	4	18	1	0	0	0	0	1	0	0	0	9626	652	23	1	1425	1	MKI67	10	129901747	Missense_Mutation	SNP	C	TCGA-OR-A5JP-01A-11D-A29I-10	25742551	129901747	5633000	92	3461										
DRD4	1815	hgsc.bcm.edu	37	chr11	639873	639873	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0538922155688623	9	0.929330005145667	1.15715672527235	2.25259842519685	0.586614173228346	0.419710144927536	1	0	ttcctaccctgcccgctcatGctgctgctctactgggccac	8	18	2	0	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	DRD4-90	NM_000797	exon3	c.G624A	p.M208I	GCTCATGCTGCTG	.	22	7	10	0	.	0	0	0	0	0	A	639873	G	A	639873	3	1	18	1	0	0	0	0	1	0	0	0	4770	1319	46	3	634	3	DRD4	11	639873	Missense_Mutation	SNP	G	TCGA-OR-A5JP-01A-11D-A29I-10		639873	134366643	93	3462										
NELL1	4745	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	21250963	21250963	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0538922155688623	9	0.929330005145667	1.15715672527235	2.25259842519685	0.586614173228346	0.419710144927536	1	0	cagggacacagctgcacctgCaaaccgggctacgtggggaa	14	12	0	0	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	NELL1-155	NM_006157	exon14	c.C1512A	p.C504X	CACCTGCAAACCG	.	277	36	235	0	.	0	0	0	0	0	A	21250963	C	A	21250963	4	1	18	1	0	0	0	0	0	1	0	0	10362	718	25	3	1566	3	NELL1	11	21250963	Nonsense_Mutation	SNP	C	TCGA-OR-A5JP-01A-11D-A29I-10	20611090	21250963	113755553	94	3463										
FERMT3	83706	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	63978534	63978534	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0538922155688623	9	0.929330005145667	1.15715672527235	2.25259842519685	0.586614173228346	0.419710144927536	1	0	ctcccctcaggcatccggcaCcccgaggagctgtccctgct	10	19	1	0	rs78810429	byfrequency;alternate_allele	TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	FERMT3-23	NM_031471	exon4	c.C405G	p.H135Q	CCGGCACCCCGAG	.	88	22	66	0	C|0.993;T|0.007	0	0	0	0	0	G	63978534	C	G	63978534	3	3	18	1	0	0	0	0	1	0	0	0	5838	506	18	3	415	3	FERMT3	11	63978534	Missense_Mutation	SNP	C	TCGA-OR-A5JP-01A-11D-A29I-10	42727571	63978534	71027982	95	3464										
PYGM	5837	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	64518843	64518843	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0538922155688623	9	0.929330005145667	1.15715672527235	2.25259842519685	0.586614173228346	0.419710144927536	1	0	ttctccaggaagatgacacgGaggcggtcacccactgccgg	13	13	2	2	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	PYGM-92	NM_005609	exon16	c.C1923T	p.L641L	GACACGGAGGCGG	.	205	52	142	0	.	1	1	0	0	0	A	64518843	G	A	64518843	2	1	18	1	0	0	0	0	0	0	0	1	12897	1161	41	3		3	PYGM	11	64518843	Silent	SNP	G	TCGA-OR-A5JP-01A-11D-A29I-10	540309	64518843	70487673	96	3465										
SYVN1	84447	hgsc.bcm.edu	37	chr11	64898229	64898229	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0538922155688623	9	0.929330005145667	1.15715672527235	2.25259842519685	0.586614173228346	0.419710144927536	1	0	ggtgactgcgctggcagcgaTgcacgaaggacatccatacg	14	11	0	1	rs111304413	byfrequency	TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	SYVN1-91	NM_172230	exon11	c.A1008G	p.A336A	CAGCGATGCACGA	.	12	10	0	0	A|0.000;C|0.015;T|0.985	32	12	20	0	0	C	64898229	T	C	64898229	2	2	18	1	0	0	0	0	0	0	0	1	15524	1451	51	4		4	SYVN1	11	64898229	Silent	SNP	T	TCGA-OR-A5JP-01A-11D-A29I-10	379386	64898229	70108287	97	3466										
HTR3A	3359	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr11	113857492	113857492	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0538922155688623	9	0.929330005145667	1.15715672527235	2.25259842519685	0.586614173228346	0.419710144927536	1	0	gagctcagtctggtgagaaaCccgccccctcccacctcctg	9	18	2	1	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	HTR3A-90	NM_213621	exon7	c.C976A	p.P326T	GAGAAACCCGCCC	.	136	12	132	0	.	0	0	0	0	0	A	113857492	C	A	113857492	3	1	18	1	0	0	0	0	1	0	0	0	7465	507	18	3	1028	3	HTR3A	11	113857492	Missense_Mutation	SNP	C	TCGA-OR-A5JP-01A-11D-A29I-10	48959263	113857492	21149024	98	3467										
GALNT8	26290	bcgsc.ca	37	chr12	4853806	4853806	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0538922155688623	9	0.929330005145667	1.15715672527235	2.25259842519685	0.586614173228346	0.419710144927536	1	0	agcccgcaacactggctgggAagctgccacagcagacgtgg	14	13	0	1	rs34776842	byfrequency	TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	GALNT8-230	NM_017417	exon4	c.A800G	p.E267G	GCTGGGAAGCTGC	.	140	5	92	0	A|0.927;G|0.073	0	0	0	0	0	G	4853806	A	G	4853806	3	3	18	1	0	0	0	0	1	0	0	0	6239	246	9	4	814	4	GALNT8	12	4853806	Missense_Mutation	SNP	A	TCGA-OR-A5JP-01A-11D-A29I-10		4853806	128998089	99	3468										
PRB3	5544	hgsc.bcm.edu;broad.mit.edu	37	chr12	11421070	11421070	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0538922155688623	9	0.929330005145667	1.15715672527235	2.25259842519685	0.586614173228346	0.419710144927536	1	0	ttcctccttgtgggcgtcgtCcttctggctttcctggagga	12	12	1	0	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	PRB3-1	NM_006249	exon3	c.G113T	p.G38V	CGTCGTCCTTCTG	.	25	4	18	0	.	0	0	0	0	0	A	11421070	C	A	11421070	3	1	18	1	0	0	0	0	1	0	0	0	12476	855	30	3	824	3	PRB3	12	11421070	Missense_Mutation	SNP	C	TCGA-OR-A5JP-01A-11D-A29I-10	6567264	11421070	122430825	100	3469										
PRB4	5545	hgsc.bcm.edu	37	chr12	11461804	11461804	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0538922155688623	9	0.929330005145667	1.15715672527235	2.25259842519685	0.586614173228346	0.419710144927536	1	0	ttcctccttgtgggcgtcgtCcttctggctttcctggagga	12	12	1	0	rs150367358	byfrequency;alternate_allele	TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	PRB4-91	NM_001261399	exon3	c.G113T	p.G38V	CGTCGTCCTTCTG	.	56	4	38	0	C|0.999;T|0.001	0	0	0	0	0	A	11461804	C	A	11461804	3	1	18	1	0	0	0	0	1	0	0	0	12477	855	30	3	634	3	PRB4	12	11461804	Missense_Mutation	SNP	C	TCGA-OR-A5JP-01A-11D-A29I-10	40734	11461804	122390091	101	3470										
C12orf36	283422	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	13526239	13526239	+	RNA	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0538922155688623	9	0.929330005145667	1.15715672527235	2.25259842519685	0.586614173228346	0.419710144927536	1	0	cgtctgtccactcttcagccTctgaatcctccaagcaattc	5	16	4	1	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	C12orf36-90	.	.	.	.	TCAGCCTCTGAAT	.	79	12	91	0	.	0	0	0	0	0	A	13526239	T	A	13526239	1	1	18	0	1	0	0	0	0	0	0	0	1687	1550	54	5		5	C12orf36	12	13526239	RNA	SNP	T	TCGA-OR-A5JP-01A-11D-A29I-10	2064435	13526239	120325656	102	3471										
PLEKHA5	54477	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	19499950	19499950	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0538922155688623	9	0.929330005145667	1.15715672527235	2.25259842519685	0.586614173228346	0.419710144927536	1	0	agaggaagtagtcccacctcGtcctccacttcctcggtcct	8	16	0	1	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	PLEKHA5-227	NM_001256470	exon24	c.G2732T	p.R911L	CACCTCGTCCTCC	.	113	15	75	0	.	0	0	0	0	0	T	19499950	G	T	19499950	3	4	18	1	0	0	0	0	1	0	0	0	12088	1145	40	2	2622	2	PLEKHA5	12	19499950	Missense_Mutation	SNP	G	TCGA-OR-A5JP-01A-11D-A29I-10	5973711	19499950	114351945	103	3472										
OVCH1	341350	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	29604304	29604304	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0538922155688623	9	0.929330005145667	1.15715672527235	2.25259842519685	0.586614173228346	0.419710144927536	1	0	tctttctcttactgtgtcttTcttcataaataattagaact	3	8	5	1	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	OVCH1-210	NM_183378	exon22	c.A2729G	p.E910G	TGTCTTTCTTCAT	.	78	23	64	0	.	0	0	0	0	0	C	29604304	T	C	29604304	3	2	18	1	0	0	0	0	1	0	0	0	11352	1783	62	4	703	4	OVCH1	12	29604304	Missense_Mutation	SNP	T	TCGA-OR-A5JP-01A-11D-A29I-10	10104354	29604304	104247591	104	3473										
SCN8A	6334	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	52188154	52188154	+	Splice_Site	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0538922155688623	9	0.929330005145667	1.15715672527235	2.25259842519685	0.586614173228346	0.419710144927536	1	0	tttccttcccttcctccccaGaacaaaatccaaggaatcgt	4	15	0	1	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	SCN8A-29	NM_001177984	exon25	c.4402-1G>T	.	TCCCCAGAACAAA	.	97	18	60	0	.	0	0	0	0	0	T	52188154	G	T	52188154	5	4	18	1	0	0	0	0	0	0	1	0	13959	956	33	3	4622	3	SCN8A	12	52188154	Splice_Site	SNP	G	TCGA-OR-A5JP-01A-11D-A29I-10	22583850	52188154	81663741	105	3474										
MYBPC1	4604	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	102043128	102043128	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0538922155688623	9	0.929330005145667	1.15715672527235	2.25259842519685	0.586614173228346	0.419710144927536	1	0	cacatcttgatcatagagggAgcaacaaaggctgatgctgc	11	9	2	3	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	MYBPC1-94	NM_206819	exon15	c.A1287G	p.G429G	AGAGGGAGCAACA	.	126	22	101	0	.	0	0	0	0	0	G	102043128	A	G	102043128	2	3	18	1	0	0	0	0	0	0	0	1	10039	291	11	4		4	MYBPC1	12	102043128	Silent	SNP	A	TCGA-OR-A5JP-01A-11D-A29I-10	49854974	102043128	31808767	106	3475										
ATXN2	6311	hgsc.bcm.edu	37	chr12	112036797	112036797	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0538922155688623	9	0.929330005145667	1.15715672527235	2.25259842519685	0.586614173228346	0.419710144927536	1	0	tgctgttgctgctgctgctgCtgctgctgctgctgctgctg	14	12	0	0	rs4098854		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	ATXN2-136	NM_002973	exon1	c.G522A	p.Q174Q	CTGCTGCTGCTGC	.	4	4	0	0	C|0.429;T|0.571	174	164	10	0	0	T	112036797	C	T	112036797	2	4	18	1	0	0	0	0	0	0	0	1	1212	796	28	3		3	ATXN2	12	112036797	Silent	SNP	C	TCGA-OR-A5JP-01A-11D-A29I-10	9993669	112036797	21815098	107	3476										
FREM2	341640	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr13	39452353	39452353	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0538922155688623	9	0.929330005145667	1.15715672527235	2.25259842519685	0.586614173228346	0.419710144927536	1	0	tgcagcattgagaaggtgttTctatgcactggagctgatgg	14	6	1	2	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	FREM2-100	NM_207361	exon22	c.T8754C	p.F2918F	GGTGTTTCTATGC	.	133	20	155	0	.	1	1	0	0	0	C	39452353	T	C	39452353	2	2	18	1	0	0	0	0	0	0	0	1	6064	1780	62	4		4	FREM2	13	39452353	Silent	SNP	T	TCGA-OR-A5JP-01A-11D-A29I-10		39452353	75717525	108	3477										
PCDH8	5100	hgsc.bcm.edu	37	chr13	53420344	53420344	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0538922155688623	9	0.929330005145667	1.15715672527235	2.25259842519685	0.586614173228346	0.419710144927536	1	0	gcggcgtgtcccattgcagcAccgacccggacaccccgagc	12	18	0	0	rs5030685	byfrequency	TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	PCDH8-153	NM_002590	exon1	c.T2228C	p.V743A	TGCAGCACCGACC	.	16	13	5	0	A|0.947;G|0.053	0	0	0	0	0	G	53420344	A	G	53420344	3	3	18	1	0	0	0	0	1	0	0	0	11546	159	6	4	996	4	PCDH8	13	53420344	Missense_Mutation	SNP	A	TCGA-OR-A5JP-01A-11D-A29I-10	13967991	53420344	61749534	109	3478										
ZNF219	51222	hgsc.bcm.edu	37	chr14	21560706	21560706	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0538922155688623	9	0.929330005145667	1.15715672527235	2.25259842519685	0.586614173228346	0.419710144927536	1	0	gttgcctcacgttcgggctcCggctccggctccggctgggg	16	15	1	0	rs1065496	byfrequency	TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	ZNF219-90	NM_001102454	exon3	c.G750C	p.P250P	GGGCTCCGGCTCC	.	33	16	3	0	C|0.100;G|0.900	74	33	41	0	0	G	21560706	C	G	21560706	2	3	18	1	0	0	0	0	0	0	0	1	17810	639	23	2		2	ZNF219	14	21560706	Silent	SNP	C	TCGA-OR-A5JP-01A-11D-A29I-10		21560706	85788834	110	3479										
TBPL2	387332	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr14	55903342	55903342	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0538922155688623	9	0.929330005145667	1.15715672527235	2.25259842519685	0.586614173228346	0.419710144927536	1	0	ttggtgtcatgggagttatgGatgccagagacaaggagtcg	16	5	1	1	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	TBPL2-90	NM_199047	exon2	c.C545A	p.S182Y	GTTATGGATGCCA	.	342	40	218	0	.	0	0	0	0	0	T	55903342	G	T	55903342	3	4	18	1	0	0	0	0	1	0	0	0	15683	1174	41	3	606	3	TBPL2	14	55903342	Missense_Mutation	SNP	G	TCGA-OR-A5JP-01A-11D-A29I-10	34342636	55903342	51446198	111	3480										
TGFB3	7043	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr14	76447102	76447102	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0538922155688623	9	0.929330005145667	1.15715672527235	2.25259842519685	0.586614173228346	0.419710144927536	1	0	ctgagcttgctcaagatctgTcccctaatggcttccaccct	7	15	2	2	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	TGFB3-524	NM_003239	exon1	c.A135C	p.G45G	GATCTGTCCCCTA	.	339	62	194	0	.	7	6	1	0	0	G	76447102	T	G	76447102	2	3	18	1	0	0	0	0	0	0	0	1	15856	1654	58	5		5	TGFB3	14	76447102	Silent	SNP	T	TCGA-OR-A5JP-01A-11D-A29I-10	20543760	76447102	30902438	112	3481										
CKB	1152	hgsc.bcm.edu	37	chr14	103988180	103988180	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0538922155688623	9	0.929330005145667	1.15715672527235	2.25259842519685	0.586614173228346	0.419710144927536	1	0	accgcgagcttctcgatggcGcggcgctccccgcggctgca	14	17	1	0	rs1136165	byfrequency	TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	CKB-115	NM_001823	exon4	c.C456A	p.R152R	GATGGCGCGGCGC	.	7	6	0	0	G|0.327;T|0.673	147	73	74	0	0	T	103988180	G	T	103988180	2	4	18	1	0	0	0	0	0	0	0	1	3452	1074	38	2		2	CKB	14	103988180	Silent	SNP	G	TCGA-OR-A5JP-01A-11D-A29I-10	27541078	103988180	3361360	113	3482										
AHNAK2	113146	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr14	105415287	105415287	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0538922155688623	9	0.929330005145667	1.15715672527235	2.25259842519685	0.586614173228346	0.419710144927536	1	0	gcctcgatggacttgcctggGgcagacaccccaaacgacgg	13	14	0	1	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	AHNAK2-47	NM_138420	exon7	c.C6501G	p.A2167A	GCCTGGGGCAGAC	.	235	96	140	0	.	0	0	0	0	0	C	105415287	G	C	105415287	2	2	18	1	0	0	0	0	0	0	0	1	415	1219	43	3		3	AHNAK2	14	105415287	Silent	SNP	G	TCGA-OR-A5JP-01A-11D-A29I-10	1427107	105415287	1934253	114	3483										
VPS13C	54832	bcgsc.ca	37	chr15	62243197	62243197	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0538922155688623	9	0.929330005145667	1.15715672527235	2.25259842519685	0.586614173228346	0.419710144927536	1	0	agtcacattagaagagttaaTaatgtgaagaggttcccctt	9	6	1	4	rs11629598	byfrequency	TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	VPS13C-92	NM_020821	exon40	c.A4483G	p.I1495V	AGTTAATAATGTG	.	92	6	188	1	T|0.946;C|0.054	0	0	0	0	0	C	62243197	T	C	62243197	3	2	18	1	0	0	0	0	1	0	0	0	17229	1406	49	4	6990	4	VPS13C	15	62243197	Missense_Mutation	SNP	T	TCGA-OR-A5JP-01A-11D-A29I-10		62243197	40288195	115	3484										
MTFMT	123263	hgsc.bcm.edu	37	chr15	65321780	65321780	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0538922155688623	9	0.929330005145667	1.15715672527235	2.25259842519685	0.586614173228346	0.419710144927536	1	0	ccgcagcgcctcgcgggcgaActggtccgtgccgaagaaga	15	14	0	2	rs188718836		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	MTFMT-24	NM_139242	exon1	c.T172A	p.F58I	GGGCGAACTGGTC	.	24	11	1	0	A|0.995;T|0.005	6	5	1	0	0	T	65321780	A	T	65321780	3	4	18	1	0	0	0	0	1	0	0	0	9952	43	2	5	1033	5	MTFMT	15	65321780	Missense_Mutation	SNP	A	TCGA-OR-A5JP-01A-11D-A29I-10	3078583	65321780	37209612	116	3485										
KBTBD13	390594	hgsc.bcm.edu	37	chr15	65369395	65369395	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0538922155688623	9	0.929330005145667	1.15715672527235	2.25259842519685	0.586614173228346	0.419710144927536	1	0	ggaggacgagctgctgcaggCcgtggagtgcgccgccttcc	17	13	0	0	rs2919358	byfrequency	TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	.	NM_001101362	exon1	c.C242T	p.A81V	TGCAGGCCGTGGA	.	7	5	0	0	C|0.452;T|0.548	0	0	0	0	0	T	65369395	C	T	65369395	3	4	18	1	0	0	0	0	1	0	0	0	8013	739	26	3	244	3	KBTBD13	15	65369395	Missense_Mutation	SNP	C	TCGA-OR-A5JP-01A-11D-A29I-10	47615	65369395	37161997	117	3486										
KBTBD13	390594	hgsc.bcm.edu	37	chr15	65369531	65369531	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0538922155688623	9	0.929330005145667	1.15715672527235	2.25259842519685	0.586614173228346	0.419710144927536	1	0	gacgtgttccacagtgccgcGctcttcatctgcgacggcga	12	14	3	0	rs2946642	byfrequency	TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	.	NM_001101362	exon1	c.G378T	p.A126A	TGCCGCGCTCTTC	.	5	5	0	0	G|0.479;T|0.521	0	0	0	0	0	T	65369531	G	T	65369531	2	4	18	1	0	0	0	0	0	0	0	1	8013	1074	38	2		2	KBTBD13	15	65369531	Silent	SNP	G	TCGA-OR-A5JP-01A-11D-A29I-10	136	65369531	37161861	118	3487										
CHRNA5	1138	broad.mit.edu;bcgsc.ca	37	chr15	78882715	78882715	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0538922155688623	9	0.929330005145667	1.15715672527235	2.25259842519685	0.586614173228346	0.419710144927536	1	0	tgatttttgtgacactgtcaAttatggtaaccgtcttcgct	8	8	2	2	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	CHRNA5-516	NM_000745	exon5	c.A982G	p.I328V	CTGTCAATTATGG	.	175	49	122	2	.	2	1	1	0	0	G	78882715	A	G	78882715	3	3	18	1	0	0	0	0	1	0	0	0	3392	101	4	4	1000	4	CHRNA5	15	78882715	Missense_Mutation	SNP	A	TCGA-OR-A5JP-01A-11D-A29I-10	13513184	78882715	23648677	119	3488										
SOLH	6650	hgsc.bcm.edu	37	chr16	597408	597408	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0538922155688623	9	0.929330005145667	1.15715672527235	2.25259842519685	0.586614173228346	0.419710144927536	1	0	gtcccggaagtggtggccccGgccggcttccacgtcgtgcc	15	16	0	0	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	SOLH-523	NM_005632	exon4	c.G570C	p.P190P	GGCCCCGGCCGGC	.	16	7	0	0	.	13	8	5	0	0	C	597408	G	C	597408	2	2	18	1	0	0	0	0	0	0	0	1	14960	1103	39	2		2	SOLH	16	597408	Silent	SNP	G	TCGA-OR-A5JP-01A-11D-A29I-10		597408	89757345	120	3489										
ZNF598	90850	hgsc.bcm.edu	37	chr16	2059674	2059674	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0538922155688623	9	0.929330005145667	1.15715672527235	2.25259842519685	0.586614173228346	0.419710144927536	1	0	acagcacgcagctcccgcctTcccgctcaggagctgccgcc	10	20	1	0	rs71384660		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	ZNF598-432	NM_178167	exon2	c.A74G	p.E25G	CCGCCTTCCCGCT	.	6	5	0	0	T|0.007;C|0.993	2	0	2	0	0	C	2059674	T	C	2059674	3	2	18	1	0	0	0	0	1	0	0	0	18065	1770	62	4	2689	4	ZNF598	16	2059674	Missense_Mutation	SNP	T	TCGA-OR-A5JP-01A-11D-A29I-10	1462266	2059674	88295079	121	3490										
CCDC102A	92922	hgsc.bcm.edu	37	chr16	57562804	57562804	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0538922155688623	9	0.929330005145667	1.15715672527235	2.25259842519685	0.586614173228346	0.419710144927536	1	0	ggcagtgcagtccgaccaccGgcgcatggtcttctccatct	11	15	3	0	rs12935069		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	CCDC102A-91	NM_033212	exon2	c.C286T	p.R96W	ACCACCGGCGCAT	.	6	6	0	0	G|0.001;A|0.999	1	0	1	0	0	A	57562804	G	A	57562804	3	1	18	1	0	0	0	0	1	0	0	0	2742	1115	39	1	1398	1	CCDC102A	16	57562804	Missense_Mutation	SNP	G	TCGA-OR-A5JP-01A-11D-A29I-10	55503130	57562804	32791949	122	3491										
KCNG4	93107	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	84256305	84256305	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0538922155688623	9	0.929330005145667	1.15715672527235	2.25259842519685	0.586614173228346	0.419710144927536	1	0	acggcgcacggtgagccccaGcgtctgcagccccagcgagt	14	16	1	1	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	KCNG4-93	NM_172347	exon3	c.C1078T	p.L360L	GCCCCAGCGTCTG	.	377	97	101	1	.	0	0	0	0	0	A	84256305	G	A	84256305	2	1	18	1	0	0	0	0	0	0	0	1	8051	962	34	3		3	KCNG4	16	84256305	Silent	SNP	G	TCGA-OR-A5JP-01A-11D-A29I-10	26693501	84256305	6098448	123	3492										
USP10	9100	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	84806251	84806251	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0538922155688623	9	0.929330005145667	1.15715672527235	2.25259842519685	0.586614173228346	0.419710144927536	1	0	ggtgggtgccagaagcttatCaaaaatattgaatatcctgt	10	6	1	2	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	USP10-636	NM_001272075	exon13	c.C2115G	p.I705M	GCTTATCAAAAAT	.	124	13	140	0	.	27	18	9	0	0	G	84806251	C	G	84806251	3	3	18	1	0	0	0	0	1	0	0	0	17079	816	29	3	2149	3	USP10	16	84806251	Missense_Mutation	SNP	C	TCGA-OR-A5JP-01A-11D-A29I-10	549946	84806251	5548502	124	3493										
TRPV3	162514	bcgsc.ca	37	chr17	3446885	3446885	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0538922155688623	9	0.929330005145667	1.15715672527235	2.25259842519685	0.586614173228346	0.419710144927536	1	0	gatgcgcttcttcagccgccTctttttcctcctctgctctt	6	16	5	0	rs322937	byfrequency	TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	TRPV3-94	NM_001258205	exon5	c.A349G	p.R117G	GCCGCCTCTTTTT	.	81	7	73	0	T|0.714;C|0.286	0	0	0	0	0	C	3446885	T	C	3446885	3	2	18	1	0	0	0	0	1	0	0	0	16635	1550	54	4	2079	4	TRPV3	17	3446885	Missense_Mutation	SNP	T	TCGA-OR-A5JP-01A-11D-A29I-10		3446885	77748325	125	3494										
SPNS2	124976	ucsc.edu	37	chr17	4436657	4436657	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0538922155688623	9	0.929330005145667	1.15715672527235	2.25259842519685	0.586614173228346	0.419710144927536	1	0	cccactggtgtgtgccgtggGcatgctgggctctgccatct	14	13	2	0	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	SPNS2-68	NM_001124758	exon8	c.G1208T	p.G403V	CCGTGGGCATGCT	.	41	4	13	0	.	1	1	0	0	0	T	4436657	G	T	4436657	3	4	18	1	0	0	0	0	1	0	0	0	15112	1203	42	3	1238	3	SPNS2	17	4436657	Missense_Mutation	SNP	G	TCGA-OR-A5JP-01A-11D-A29I-10	989772	4436657	76758553	126	3495										
TP53	7157	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr17	7574011	7574012	+	Frame_Shift_Ins	INS	-	-	CGAAG													0.0538922155688623	9	0.929330005145667	1.15715672527235	2.25259842519685	0.586614173228346	0.419710144927536	1	0	attcagctctcggaacatctINScgaagcgctcacgcccacgg					novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	TP53-70225	NM_001126112	exon10	c.1016_1017insCTTCG	p.E339fs	AACATCTCGAAGC	.	118	25	176	0	.	0	0	0	0	0	CGAAG	7574012	-	CGAAG	7574011	7	5	18	1	0	1	1	0	0	0	0	0	16419	1551	54	0	173	0	TP53	17	7574011	Frame_Shift_Ins	INS	-	TCGA-OR-A5JP-01A-11D-A29I-10	3137354	7574011	73621199	127	3496										
NF1	4763	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	29664421	29664421	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0538922155688623	9	0.929330005145667	1.15715672527235	2.25259842519685	0.586614173228346	0.419710144927536	1	0	ttttgagactcagtctgacaGagttctcattacccaaattt	6	9	3	3	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	NF1-3353	NM_001042492	exon43	c.G6463T	p.E2155X	CTGACAGAGTTCT	.	47	32	55	0	.	0	0	0	0	0	T	29664421	G	T	29664421	4	4	18	1	0	0	0	0	0	1	0	0	10385	943	33	3	6694	3	NF1	17	29664421	Nonsense_Mutation	SNP	G	TCGA-OR-A5JP-01A-11D-A29I-10	22090410	29664421	51530789	128	3497										
KRTAP4-5	85289	broad.mit.edu	37	chr17	39305775	39305776	+	In_Frame_Ins	INS	-	-	GGCAGCAGCTGGGGC													0.0538922155688623	9	0.929330005145667	1.15715672527235	2.25259842519685	0.586614173228346	0.419710144927536	1	0	ggtcctgcagcaggtggtctINSggcagcagcaggggcggcag					novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	KRTAP4-5-90	NM_033188	exon1	c.245_246insGCCCCAGCTGCTGCC	p.Q82delinsRPSCCQ	GTGGTCTGGCAGC	.	94	66	11	0	.	0	0	0	0	0	GGCAGCAGCTGGGGC	39305776	-	GGCAGCAGCTGGGGC	39305775	7	5	18	1	0	1	1	0	0	0	0	0	8576	1580	55	0	304	0	KRTAP4-5	17	39305775	In_Frame_Ins	INS	-	TCGA-OR-A5JP-01A-11D-A29I-10	9641354	39305775	41889435	129	3498										
GPATCH8	23131	broad.mit.edu;bcgsc.ca	37	chr17	42477935	42477940	+	In_Frame_Del	DEL	CTGAAA	CTGAAA	-													0.0538922155688623	9	0.929330005145667	1.15715672527235	2.25259842519685	0.586614173228346	0.419710144927536	1	0	ggactcacacatttgggtctCtgaaaccttctgactatgac					novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	GPATCH8-94	NM_001002909	exon8	c.1505_1510del	p.502_504del	GGGTCTCTGAAAC	.	55	7	83	0	.	0	0	0	0	0	-	42477940	CTGAAA	-	42477935	7	5	18	1	0	1	0	1	0	0	0	0	6614	922	32	0	3002	0	GPATCH8	17	42477935	In_Frame_Del	DEL	CTGAAA	TCGA-OR-A5JP-01A-11D-A29I-10	3172160	42477935	38717275	130	3499										
ITGA3	3675	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	48165662	48165662	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0538922155688623	9	0.929330005145667	1.15715672527235	2.25259842519685	0.586614173228346	0.419710144927536	1	0	gaaggcggagatgaagagccAgccgtcagagacagagaggc	17	8	1	5	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	ITGA3-229	NM_002204	exon25	c.A3119C	p.Q1040P	AGAGCCAGCCGTC	.	166	18	142	0	.	12	10	2	0	0	C	48165662	A	C	48165662	3	2	18	1	0	0	0	0	1	0	0	0	7898	188	7	5	3217	5	ITGA3	17	48165662	Missense_Mutation	SNP	A	TCGA-OR-A5JP-01A-11D-A29I-10	5687727	48165662	33029548	131	3500										
ANKRD40	91369	broad.mit.edu	37	chr17	48774315	48774315	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0538922155688623	9	0.929330005145667	1.15715672527235	2.25259842519685	0.586614173228346	0.419710144927536	1	0	tcttaccttccttaacagagTattgggtaactttctgatct	6	9	3	2	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	ANKRD40-90	NM_052855	exon4	c.A946G	p.T316A	ACAGAGTATTGGG	.	108	5	72	1	.	16	16	0	0	0	C	48774315	T	C	48774315	3	2	18	1	0	0	0	0	1	0	0	0	669	1638	57	4	168	4	ANKRD40	17	48774315	Missense_Mutation	SNP	T	TCGA-OR-A5JP-01A-11D-A29I-10	608653	48774315	32420895	132	3501										
TMEM104	54868	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	72786401	72786401	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0538922155688623	9	0.929330005145667	1.15715672527235	2.25259842519685	0.586614173228346	0.419710144927536	1	0	gttctcatccgggacaactaCgagcgggcagagaagcggcc	14	12	1	1	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	TMEM104-90	NM_017728	exon5	c.C312T	p.Y104Y	CAACTACGAGCGG	.	215	44	106	1	.	44	34	10	0	0	T	72786401	C	T	72786401	2	4	18	1	0	0	0	0	0	0	0	1	16055	547	19	1		1	TMEM104	17	72786401	Silent	SNP	C	TCGA-OR-A5JP-01A-11D-A29I-10	24012086	72786401	8408809	133	3502										
FDXR	2232	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	72862659	72862659	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0538922155688623	9	0.929330005145667	1.15715672527235	2.25259842519685	0.586614173228346	0.419710144927536	1	0	agaaggcacagcggccagaaTgggccgtctgggtaaatgtg	16	8	1	2	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	FDXR-226	NM_001258012	exon4	c.A431G	p.H144R	CCAGAATGGGCCG	.	419	90	160	1	.	846	606	239	0	1	C	72862659	T	C	72862659	3	2	18	1	0	0	0	0	1	0	0	0	5826	1464	51	4	1227	4	FDXR	17	72862659	Missense_Mutation	SNP	T	TCGA-OR-A5JP-01A-11D-A29I-10	76258	72862659	8332551	134	3503										
KIAA0195	9772	bcgsc.ca	37	chr17	73485707	73485707	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0538922155688623	9	0.929330005145667	1.15715672527235	2.25259842519685	0.586614173228346	0.419710144927536	1	0	ttcatcttcagtgccccgggGgtcacttcctggcagtacac	10	14	4	0	rs34364349	byfrequency	TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	KIAA0195-91	NM_014738	exon9	c.G918A	p.G306G	CCCGGGGGTCACT	.	183	6	100	0	G|0.951;A|0.049	21	21	0	0	0	A	73485707	G	A	73485707	2	1	18	1	0	0	0	0	0	0	0	1	8181	1219	43	3		3	KIAA0195	17	73485707	Silent	SNP	G	TCGA-OR-A5JP-01A-11D-A29I-10	623048	73485707	7709503	135	3504										
TNRC6C	57690	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr17	76067213	76067213	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0538922155688623	9	0.929330005145667	1.15715672527235	2.25259842519685	0.586614173228346	0.419710144927536	1	0	gaggcctggatcatgagccgGctgatcaaacaactcacaga	11	11	3	3	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	TNRC6C-24	NM_018996	exon7	c.G2826C	p.R942R	GAGCCGGCTGATC	.	331	27	187	0	.	1	1	0	0	0	C	76067213	G	C	76067213	2	2	18	1	0	0	0	0	0	0	0	1	16379	1190	42	3		3	TNRC6C	17	76067213	Silent	SNP	G	TCGA-OR-A5JP-01A-11D-A29I-10	2581506	76067213	5127997	136	3505										
SEH1L	81929	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr18	12986994	12986994	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0538922155688623	9	0.929330005145667	1.15715672527235	2.25259842519685	0.586614173228346	0.419710144927536	1	0	ctgccaacctccagtatcctCaccctcgcagacgatatctc	5	18	2	1	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	SEH1L-90	NM_001013437	exon9	c.C1204A	p.H402N	TATCCTCACCCTC	.	66	26	74	0	.	35	19	16	0	0	A	12986994	C	A	12986994	3	1	18	1	0	0	0	0	1	0	0	0	14044	826	29	3	1255	3	SEH1L	18	12986994	Missense_Mutation	SNP	C	TCGA-OR-A5JP-01A-11D-A29I-10		12986994	65090254	137	3506										
SMAD7	4092	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr18	46447841	46447841	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0538922155688623	9	0.929330005145667	1.15715672527235	2.25259842519685	0.586614173228346	0.419710144927536	1	0	ttcacaaagctgatctgcacGgtaaagcccgtccacggctg	10	13	2	1	rs141213977	byfrequency	TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	SMAD7-414	NM_005904	exon4	c.C1182T	p.T394T	CTGCACGGTAAAG	.	167	54	165	0	G|0.999;A|0.001	14	9	5	0	0	A	46447841	G	A	46447841	2	1	18	1	0	0	0	0	0	0	0	1	14798	1103	39	1		1	SMAD7	18	46447841	Silent	SNP	G	TCGA-OR-A5JP-01A-11D-A29I-10	33460847	46447841	31629407	138	3507										
ABCA7	10347	hgsc.bcm.edu	37	chr19	1065044	1065044	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0538922155688623	9	0.929330005145667	1.15715672527235	2.25259842519685	0.586614173228346	0.419710144927536	1	0	ctgcgcgaggcacatggaggCcgcctgcgcttccagctgcc	14	16	0	0	rs4147935	byfrequency	TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	ABCA7-98	NM_019112	exon46	c.C6159T	p.G2053G	TGGAGGCCGCCTG	.	10	10	0	0	C|0.766;T|0.234	0	0	0	0	0	T	1065044	C	T	1065044	2	4	18	1	0	0	0	0	0	0	0	1	37	726	26	3		3	ABCA7	19	1065044	Silent	SNP	C	TCGA-OR-A5JP-01A-11D-A29I-10		1065044	58063939	139	3508										
CACNA1A	773	hgsc.bcm.edu	37	chr19	13319693	13319693	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0538922155688623	9	0.929330005145667	1.15715672527235	2.25259842519685	0.586614173228346	0.419710144927536	1	0	tccttgtcggggggcgggggAtggtggtggtggtggtggtg	25	4	0	0	rs16051	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	CACNA1A-67	NM_001127221	exon46	c.T6660C	p.H2220H	CGGGGGATGGTGG	.	21	11	0	0	A|0.360;G|0.640	0	0	0	0	0	G	13319693	A	G	13319693	2	3	18	1	0	0	0	0	0	0	0	1	2544	330	12	4		4	CACNA1A	19	13319693	Silent	SNP	A	TCGA-OR-A5JP-01A-11D-A29I-10	12254649	13319693	45809290	140	3509										
C19orf57	79173	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	14000524	14000524	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0538922155688623	9	0.929330005145667	1.15715672527235	2.25259842519685	0.586614173228346	0.419710144927536	1	0	aggtgcagcctggcaaggccCtcctgtggcctccatcagcg	13	15	1	0	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	C19orf57-93	NM_024323	exon6	c.G1145A	p.R382K	AAGGCCCTCCTGT	.	51	10	24	0	.	4	4	0	0	0	T	14000524	C	T	14000524	3	4	18	1	0	0	0	0	1	0	0	0	1945	681	24	3	780	3	C19orf57	19	14000524	Missense_Mutation	SNP	C	TCGA-OR-A5JP-01A-11D-A29I-10	680831	14000524	45128459	141	3510										
PKN1	5585	hgsc.bcm.edu	37	chr19	14552087	14552087	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0538922155688623	9	0.929330005145667	1.15715672527235	2.25259842519685	0.586614173228346	0.419710144927536	1	0	aaatccgcaaggagctgaagCtgaaggagggtgctgagaac	15	7	0	3	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	PKN1-1481	NM_213560	exon2	c.C172T	p.L58L	CTGAAGCTGAAGG	.	91	8	9	0	.	32	27	5	0	0	T	14552087	C	T	14552087	2	4	18	1	0	0	0	0	0	0	0	1	12008	796	28	3		3	PKN1	19	14552087	Silent	SNP	C	TCGA-OR-A5JP-01A-11D-A29I-10	551563	14552087	44576896	142	3511										
GIPC1	10755	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	14591159	14591159	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0538922155688623	9	0.929330005145667	1.15715672527235	2.25259842519685	0.586614173228346	0.419710144927536	1	0	gagcttcagcgtgaaggtacGgcctcggggcagctccttga	15	11	1	2	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	GIPC1-226	NM_202468	exon5	c.C613T	p.R205C	AGGTACGGCCTCG	.	312	42	49	0	.	143	112	31	0	0	A	14591159	G	A	14591159	3	1	18	1	0	0	0	0	1	0	0	0	6412	1116	39	1	404	1	GIPC1	19	14591159	Missense_Mutation	SNP	G	TCGA-OR-A5JP-01A-11D-A29I-10	39072	14591159	44537824	143	3512										
CYP4F8	11283	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	15739164	15739164	+	RNA	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0538922155688623	9	0.929330005145667	1.15715672527235	2.25259842519685	0.586614173228346	0.419710144927536	1	0	tgtgcctgaaggagagcctgCggttgcatcccccaatccct	11	14	0	2	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	CYP4F8-90	.	.	.	.	AGCCTGCGGTTGC	.	101	20	44	0	.	0	0	0	0	0	T	15739164	C	T	15739164	1	4	18	0	1	0	0	0	0	0	0	0	4197	759	27	1		1	CYP4F8	19	15739164	RNA	SNP	C	TCGA-OR-A5JP-01A-11D-A29I-10	1148005	15739164	43389819	144	3513										
INSL3	3640	hgsc.bcm.edu	37	chr19	17932200	17932200	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0538922155688623	9	0.929330005145667	1.15715672527235	2.25259842519685	0.586614173228346	0.419710144927536	1	0	acacgcgcactagcgcgcgtAcgaagtggtggccgcacaac	13	14	0	0	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	INSL3-90	NM_005543	exon1	c.T116G	p.V39G	GCGCGTACGAAGT	.	47	10	1	0	.	0	0	0	0	0	C	17932200	A	C	17932200	3	2	18	1	0	0	0	0	1	0	0	0	7788	391	14	5	287	5	INSL3	19	17932200	Missense_Mutation	SNP	A	TCGA-OR-A5JP-01A-11D-A29I-10	2193036	17932200	41196783	145	3514										
ZNF675	171392	broad.mit.edu	37	chr19	23837296	23837296	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0538922155688623	9	0.929330005145667	1.15715672527235	2.25259842519685	0.586614173228346	0.419710144927536	1	0	aaagactttcacatatttatCacattgaaacattttgctct	3	8	3	2	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	ZNF675-228	NM_138330	exon4	c.G439C	p.D147H	ATTTATCACATTG	.	78	3	74	0	.	2	2	0	0	0	G	23837296	C	G	23837296	3	3	18	1	0	0	0	0	1	0	0	0	18119	826	29	3	1271	3	ZNF675	19	23837296	Missense_Mutation	SNP	C	TCGA-OR-A5JP-01A-11D-A29I-10	5905096	23837296	35291687	146	3515										
NFKBID	84807	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr19	36380791	36380791	+	Splice_Site	DEL	C	C	-													0.0538922155688623	9	0.929330005145667	1.15715672527235	2.25259842519685	0.586614173228346	0.419710144927536	1	0	gcaggctcagtgcttacttaCcccctcagggcccggcccgg					novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	NFKBID-90	NM_139239	exon12	c.888+1G>-	.	TACTTACCCCCTC	.	127	54	46	0	.	0	0	0	0	0	-	36380791	C	-	36380791	8	5	18	1	0	1	0	1	0	0	1	0	10408	521	18	0	60	0	NFKBID	19	36380791	Splice_Site	DEL	C	TCGA-OR-A5JP-01A-11D-A29I-10	12543495	36380791	22748192	147	3516										
FBXO17	115290	hgsc.bcm.edu	37	chr19	39440918	39440918	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0538922155688623	9	0.929330005145667	1.15715672527235	2.25259842519685	0.586614173228346	0.419710144927536	1	0	agcgcgtccagggccagggaTgggtccgccggcagccgtcg	18	14	0	0	rs2304117	byfrequency	TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	FBXO17-226	NM_148169	exon2	c.A69G	p.P23P	CAGGGATGGGTCC	.	19	10	0	0	T|0.545;C|0.455	2	2	0	0	0	C	39440918	T	C	39440918	2	2	18	1	0	0	0	0	0	0	0	1	5749	1451	51	4		4	FBXO17	19	39440918	Silent	SNP	T	TCGA-OR-A5JP-01A-11D-A29I-10	3060127	39440918	19688065	148	3517										
ERCC2	2068	hgsc.bcm.edu	37	chr19	45867259	45867259	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0538922155688623	9	0.929330005145667	1.15715672527235	2.25259842519685	0.586614173228346	0.419710144927536	1	0	ctcaccctgcagcacttcgtCgggcagcacggggttggcca	13	15	1	0	rs1799793	byfrequency	TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	ERCC2-848	NM_000400	exon10	c.G934A	p.D312N	CTTCGTCGGGCAG	.	7	7	0	0	C|0.804;T|0.196	19	5	14	0	0	T	45867259	C	T	45867259	3	4	18	1	0	0	0	0	1	0	0	0	5226	884	31	1	1461	1	ERCC2	19	45867259	Missense_Mutation	SNP	C	TCGA-OR-A5JP-01A-11D-A29I-10	6426341	45867259	13261724	149	3518										
GLTSCR2	29997	hgsc.bcm.edu	37	chr19	48258717	48258717	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0538922155688623	9	0.929330005145667	1.15715672527235	2.25259842519685	0.586614173228346	0.419710144927536	1	0	ggcggagctggcgcggcggcAgaggcggcggcaggcgcggc	24	12	0	1	rs1804994	byfrequency	TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	GLTSCR2-514	NM_015710	exon9	c.A1166G	p.Q389R	GGCGGCAGAGGCG	.	6	6	0	0	A|0.308;G|0.692	69	0	69	0	0	G	48258717	A	G	48258717	3	3	18	1	0	0	0	0	1	0	0	0	6495	188	7	4	1200	4	GLTSCR2	19	48258717	Missense_Mutation	SNP	A	TCGA-OR-A5JP-01A-11D-A29I-10	2391458	48258717	10870266	150	3519										
VN1R2	317701	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	53762590	53762590	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0538922155688623	9	0.929330005145667	1.15715672527235	2.25259842519685	0.586614173228346	0.419710144927536	1	0	ccaaagcatccttgcattggTgagcacctttgcattatgtt	8	10	0	1	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	VN1R2-90	NM_173856	exon1	c.T962G	p.V321G	CATTGGTGAGCAC	.	399	55	229	1	.	0	0	0	0	0	G	53762590	T	G	53762590	3	3	18	1	0	0	0	0	1	0	0	0	17217	1696	59	5	964	5	VN1R2	19	53762590	Missense_Mutation	SNP	T	TCGA-OR-A5JP-01A-11D-A29I-10	5503873	53762590	5366393	151	3520										
ELMO2	63916	bcgsc.ca	37	chr20	45014770	45014770	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0538922155688623	9	0.929330005145667	1.15715672527235	2.25259842519685	0.586614173228346	0.419710144927536	1	0	gttttttactcacacctggaGgtgtgagatgagctgtccca	11	9	1	2	rs112131818	byfrequency	TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	ELMO2-91	NM_182764	exon8	c.C670T	p.L224F	CCTGGAGGTGTGA	.	54	4	52	0	G|0.999;A|0.001	0	0	0	0	0	A	45014770	G	A	45014770	3	1	18	1	0	0	0	0	1	0	0	0	5079	1000	35	3	1548	3	ELMO2	20	45014770	Missense_Mutation	SNP	G	TCGA-OR-A5JP-01A-11D-A29I-10		45014770	18010750	152	3521										
PREX1	57580	ucsc.edu;bcgsc.ca	37	chr20	47262549	47262549	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0538922155688623	9	0.929330005145667	1.15715672527235	2.25259842519685	0.586614173228346	0.419710144927536	1	0	ggcctcctcagccaaggatgCgtcgcaggacccacccgagg	13	16	1	0	rs6012504	byfrequency	TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	PREX1-231	NM_020820	exon26	c.G3352A	p.A1118T	AGGATGCGTCGCA	.	134	33	83	0	C|0.843;T|0.157	4	2	2	0	0	T	47262549	C	T	47262549	3	4	18	1	0	0	0	0	1	0	0	0	12508	768	27	1	1687	1	PREX1	20	47262549	Missense_Mutation	SNP	C	TCGA-OR-A5JP-01A-11D-A29I-10	2247779	47262549	15762971	153	3522										
PCK1	5105	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr20	56136550	56136550	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0538922155688623	9	0.929330005145667	1.15715672527235	2.25259842519685	0.586614173228346	0.419710144927536	1	0	cagcctaccccaggcagtgaGggagtttctcgagaataacg	12	11	1	2	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	PCK1-227	NM_002591	exon2	c.G83C	p.R28T	CAGTGAGGGAGTT	.	71	14	71	0	.	1	1	0	0	0	C	56136550	G	C	56136550	3	2	18	1	0	0	0	0	1	0	0	0	11610	1000	35	3	85	3	PCK1	20	56136550	Missense_Mutation	SNP	G	TCGA-OR-A5JP-01A-11D-A29I-10	8874001	56136550	6888970	154	3523										
CDH4	1002	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr20	59829909	59829909	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0538922155688623	9	0.929330005145667	1.15715672527235	2.25259842519685	0.586614173228346	0.419710144927536	1	0	atgaggatcttacaactagaGagacctgcaaggctgggttc	12	8	1	3	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	CDH4-282	NM_001794	exon2	c.G85A	p.E29K	ACTAGAGAGACCT	.	81	17	102	0	.	2	2	0	0	0	A	59829909	G	A	59829909	3	1	18	1	0	0	0	0	1	0	0	0	3118	943	33	3	91	3	CDH4	20	59829909	Missense_Mutation	SNP	G	TCGA-OR-A5JP-01A-11D-A29I-10	3693359	59829909	3195611	155	3524										
TNFRSF6B	8771	ucsc.edu;bcgsc.ca	37	chr20	62328453	62328453	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0538922155688623	9	0.929330005145667	1.15715672527235	2.25259842519685	0.586614173228346	0.419710144927536	1	0	tgccacgccacccacaaccgTgcctgccgctgccgcaccgg	10	21	0	0	rs2258056	byfrequency	TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	TNFRSF6B-651	NM_003823	exon1	c.T333C	p.R111R	CAACCGTGCCTGC	.	177	118	15	0	T|0.777;C|0.223	29	10	19	0	0	C	62328453	T	C	62328453	2	2	18	1	0	0	0	0	0	0	0	1	16335	1683	59	4		4	TNFRSF6B	20	62328453	Silent	SNP	T	TCGA-OR-A5JP-01A-11D-A29I-10	2498544	62328453	697067	156	3525										
NEFH	4744	ucsc.edu	37	chr22	29885594	29885594	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0538922155688623	9	0.929330005145667	1.15715672527235	2.25259842519685	0.586614173228346	0.419710144927536	1	0	cctgagaaggccaagtccccAgagaaggaagaggccaagtc	13	11	0	3	rs79235463	byfrequency	TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	NEFH-90	NM_021076	exon4	c.A1965T	p.P655P	GTCCCCAGAGAAG	.	146	22	226	1	A|0.500;T|0.500	20	20	0	0	0	T	29885594	A	T	29885594	2	4	18	1	0	0	0	0	0	0	0	1	10343	175	7	5		5	NEFH	22	29885594	Silent	SNP	A	TCGA-OR-A5JP-01A-11D-A29I-10		29885594	21418972	157	3526			2	14		6	4	142	N	T_CA_AAGTCCCCAGTGAAGGCAGAAGCA_A	7.175473e-11
NEFH	4744	bcgsc.ca	37	chr22	29885644	29885645	+	Missense_Mutation	DNP	CA	CA	AG													0.0538922155688623	9	0.929330005145667	1.15715672527235	2.25259842519685	0.586614173228346	0.419710144927536	1	0	ggccaagtccccagtgaaggCagaagcaaagtcccctgaga					novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	CA	CA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	NEFH-90	NM_021076	exon4	c.A2016G	p.A672E	GAAGGCAGAAGCA	.	340	0	358	0	.	0	0	0	0	0	AG	29885645	CA	AG	29885644	3	1	18	1	0	0	0	0	1	0	0	0	10343	710	25	3	2029	3	NEFH	22	29885644	Missense_Mutation	DNP	CA	TCGA-OR-A5JP-01A-11D-A29I-10	50	29885644	21418922	158	3527			2	14		6	4	142	N	T_CA_AAGTCCCCAGTGAAGGCAGAAGCA_A	7.175473e-11
NEFH	4744	bcgsc.ca	37	chr22	29885670	29885693	+	In_Frame_Del	DEL	AAGTCCCCAGTGAAGGCAGAAGCA	AAGTCCCCAGTGAAGGCAGAAGCA	-													0.0538922155688623	9	0.929330005145667	1.15715672527235	2.25259842519685	0.586614173228346	0.419710144927536	1	0	caaagtcccctgagaaggccAagtccccagtgaaggcagaa					novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	AAGTCCCCAGTGAAGGCAGAAGCA	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	NEFH-90	NM_021076	exon4	c.2041_2064del	p.681_688del	AAGGCCAAGTCCC	.	403	45	410	0	.	0	0	0	0	0	-	29885693	AAGTCCCCAGTGAAGGCAGAAGCA	-	29885670	7	5	18	1	0	1	0	1	0	0	0	0	10343	131	5	0	2055	0	NEFH	22	29885670	In_Frame_Del	DEL	AAGTCCCCAGTGAAGGCAGAAGCA	TCGA-OR-A5JP-01A-11D-A29I-10	26	29885670	21418896	159	3528			2	14		6	4	142	N	T_CA_AAGTCCCCAGTGAAGGCAGAAGCA_A	7.175473e-11
NEFH	4744	bcgsc.ca	37	chr22	29885722	29885722	+	Missense_Mutation	SNP	T	T	A													0.0538922155688623	9	0.929330005145667	1.15715672527235	2.25259842519685	0.586614173228346	0.419710144927536	1	0	tgagaaggccaagtccccagTgaaggaagaagcaaagtccc					novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	NEFH-90	NM_021076	exon4	c.T2093A	p.V698E	CCCCAGTGAAGGA	.	372	44	417	7	.	111	111	0	0	0	A	29885722	T	A	29885722	3	1	18	1	0	0	0	0	1	0	0	0	10343	1696	59	5	2107	5	NEFH	22	29885722	Missense_Mutation	SNP	T	TCGA-OR-A5JP-01A-11D-A29I-10	52	29885722	21418844	160	3529	29	3	2	14		6	4	142	N	T_CA_AAGTCCCCAGTGAAGGCAGAAGCA_A	7.175473e-11
NEFH	4744	bcgsc.ca	37	chr22	29885732	29885732	+	Silent	SNP	A	A	G													0.0538922155688623	9	0.929330005145667	1.15715672527235	2.25259842519685	0.586614173228346	0.419710144927536	1	0	aagtccccagtgaaggaagaAgcaaagtcccctgagaaggc					novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	NEFH-90	NM_021076	exon4	c.A2103G	p.E701E	GGAAGAAGCAAAG	.	355	36	410	6	.	56	56	0	0	0	G	29885732	A	G	29885732	2	3	18	1	0	0	0	0	0	0	0	1	10343	69	3	4		4	NEFH	22	29885732	Silent	SNP	A	TCGA-OR-A5JP-01A-11D-A29I-10	10	29885732	21418834	161	3530	29	3	2	14		6	4	142	N	T_CA_AAGTCCCCAGTGAAGGCAGAAGCA_A	7.175473e-11
NEFH	4744	bcgsc.ca	37	chr22	29885735	29885735	+	Silent	SNP	A	A	C													0.0538922155688623	9	0.929330005145667	1.15715672527235	2.25259842519685	0.586614173228346	0.419710144927536	1	0	tccccagtgaaggaagaagcAaagtcccctgagaaggccaa					novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	NEFH-90	NM_021076	exon4	c.A2106C	p.A702A	AGAAGCAAAGTCC	.	352	38	410	10	.	50	50	0	0	0	C	29885735	A	C	29885735	2	2	18	1	0	0	0	0	0	0	0	1	10343	117	5	5		5	NEFH	22	29885735	Silent	SNP	A	TCGA-OR-A5JP-01A-11D-A29I-10	3	29885735	21418831	162	3531	29	3	2	14		6	4	142	N	T_CA_AAGTCCCCAGTGAAGGCAGAAGCA_A	7.175473e-11
NF2	4771	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr22	30057313	30057313	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0538922155688623	9	0.929330005145667	1.15715672527235	2.25259842519685	0.586614173228346	0.419710144927536	1	0	aatgaaatccgaaacatctcGtacagtgacaaggaggtagg	11	7	1	2	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	NF2-4696	NM_016418	exon8	c.G795A	p.S265S	CATCTCGTACAGT	.	62	8	56	0	.	18	8	10	0	0	A	30057313	G	A	30057313	2	1	18	1	0	0	0	0	0	0	0	1	10386	1132	40	1		1	NF2	22	30057313	Silent	SNP	G	TCGA-OR-A5JP-01A-11D-A29I-10	171578	30057313	21247253	163	3532										
SH3BP1	23616	hgsc.bcm.edu	37	chr22	38051355	38051355	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0538922155688623	9	0.929330005145667	1.15715672527235	2.25259842519685	0.586614173228346	0.419710144927536	1	0	cgctcctcccctccagccccGcccttgccccctggctctgg	8	24	1	0	rs762989		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	SH3BP1-90	NM_018957	exon18	c.G1770A	p.P590P	AGCCCCGCCCTTG	.	7	5	1	0	G|0.825;A|0.175	1	1	0	0	0	A	38051355	G	A	38051355	2	1	18	1	0	0	0	0	0	0	0	1	14279	1074	38	1		1	SH3BP1	22	38051355	Silent	SNP	G	TCGA-OR-A5JP-01A-11D-A29I-10	7994042	38051355	13253211	164	3533										
SOX10	6663	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr22	38374133	38374133	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0538922155688623	9	0.929330005145667	1.15715672527235	2.25259842519685	0.586614173228346	0.419710144927536	1	0	aaggggcgcttgtcactttcGttcagcagcctggggtgtgg	16	9	2	0	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	SOX10-650	NM_006941	exon3	c.C438T	p.N146N	ACTTTCGTTCAGC	.	46	5	45	0	.	0	0	0	0	0	A	38374133	G	A	38374133	2	1	18	1	0	0	0	0	0	0	0	1	14976	1136	40	1		1	SOX10	22	38374133	Silent	SNP	G	TCGA-OR-A5JP-01A-11D-A29I-10	322778	38374133	12930433	165	3534										
RBM3	5935	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	48433575	48433575	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0538922155688623	9	0.929330005145667	1.15715672527235	2.25259842519685	0.586614173228346	0.419710144927536	1	0	ggacttgaactgccatgtccTctgaagaaggaaagctcttc	10	10	2	3	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	RBM3-131	NM_006743	exon2	c.T7A	p.S3T	ATGTCCTCTGAAG	.	43	19	42	0	.	103	30	73	0	0	A	48433575	T	A	48433575	3	1	18	1	0	0	0	0	1	0	0	0	13164	1551	54	5	9	5	RBM3	23	48433575	Missense_Mutation	SNP	T	TCGA-OR-A5JP-01A-11D-A29I-10		48433575	106836985	166	3535										
RRAGB	10325	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	55758011	55758011	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0538922155688623	9	0.929330005145667	1.15715672527235	2.25259842519685	0.586614173228346	0.419710144927536	1	0	atctggtacaggaggatcaaCgggacctggtaagaaacaga	13	7	2	2	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	RRAGB-130	NM_016656	exon6	c.C592G	p.R198G	GATCAACGGGACC	.	29	9	52	0	.	5	4	1	0	0	G	55758011	C	G	55758011	3	3	18	1	0	0	0	0	1	0	0	0	13708	527	19	2	614	2	RRAGB	23	55758011	Missense_Mutation	SNP	C	TCGA-OR-A5JP-01A-11D-A29I-10	7324436	55758011	99512549	167	3536										
P2RY4	5030	bcgsc.ca	37	chrX	69478421	69478421	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0538922155688623	9	0.929330005145667	1.15715672527235	2.25259842519685	0.586614173228346	0.419710144927536	1	0	agagcagctactgtcctgggGggtggccgcccacctgcagc	15	14	0	1	rs72628860	byfrequency	TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	P2RY4-540	NM_002565	exon1	c.C1054A	p.P352T	CCTGGGGGGTGGC	.	155	10	179	2	G|0.960;T|0.040	0	0	0	0	0	T	69478421	G	T	69478421	3	4	18	1	0	0	0	0	1	0	0	0	11382	1232	43	3	47	3	P2RY4	23	69478421	Missense_Mutation	SNP	G	TCGA-OR-A5JP-01A-11D-A29I-10	13720410	69478421	85792139	168	3537										
CDX4	1046	broad.mit.edu;bcgsc.ca	37	chrX	72674262	72674262	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0538922155688623	9	0.929330005145667	1.15715672527235	2.25259842519685	0.586614173228346	0.419710144927536	1	0	gccaaggagagaaagatgatCaaaaagaaaatctcccagtt	9	7	2	4	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	CDX4-130	NM_005193	exon3	c.C696G	p.I232M	GATGATCAAAAAG	.	72	4	98	1	.	0	0	0	0	0	G	72674262	C	G	72674262	3	3	18	1	0	0	0	0	1	0	0	0	3190	816	29	3	706	3	CDX4	23	72674262	Missense_Mutation	SNP	C	TCGA-OR-A5JP-01A-11D-A29I-10	3195841	72674262	82596298	169	3538										
RERE	473	hgsc.bcm.edu	37	chr1	8421186	8421186	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0340909090909091	3	1	0.75	2	0.333333333333333	1	1	0	ggatgtgggtgtggggaacaGgcgctgtgggagcctgtggc	22	6	0	0	rs201922249		TCGA-OR-A5JQ-01A-11D-A29I-10	TCGA-OR-A5JQ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3b59a5b-bc3e-46eb-b2b9-44a50b5f4564	9b271d36-bb48-4d62-86ed-1660f35ce5c0	.	RERE-515	NM_012102	exon19	c.C2381T	p.P794L	GGAACAGGCGCTG	.	6	5	0	0	G|0.994;A|0.006	2	0	2	0	0	A	8421186	G	A	8421186	3	1	19	1	0	0	0	0	1	0	0	0	13266	1000	35	3	2343	3	RERE	1	8421186	Missense_Mutation	SNP	G	TCGA-OR-A5JQ-01A-11D-A29I-10		8421186	240829435	1	3539										
UBR4	23352	bcgsc.ca	37	chr1	19413261	19413261	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0340909090909091	3	1	0.75	2	0.333333333333333	1	1	0	tttccggggcttattctccaTctcctccaaggctacccgct	7	16	2	0	rs12584	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-OR-A5JQ-01A-11D-A29I-10	TCGA-OR-A5JQ-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3b59a5b-bc3e-46eb-b2b9-44a50b5f4564	9b271d36-bb48-4d62-86ed-1660f35ce5c0	.	UBR4-612	NM_020765	exon100	c.A14599T	p.M4867L	TCTCCATCTCCTC	.	239	7	306	1	T|0.490;A|0.510	30	30	0	0	0	A	19413261	T	A	19413261	3	1	19	1	0	0	0	0	1	0	0	0	16942	1435	50	5	980	5	UBR4	1	19413261	Missense_Mutation	SNP	T	TCGA-OR-A5JQ-01A-11D-A29I-10	10992075	19413261	229837360	2	3540										
TIE1	7075	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	43775126	43775126	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0340909090909091	3	1	0.75	2	0.333333333333333	1	1	0	ggtgccccgcttggttcttgCggacagtgggttctgggagt	17	9	2	0	rs140823224	byfrequency	TCGA-OR-A5JQ-01A-11D-A29I-10	TCGA-OR-A5JQ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3b59a5b-bc3e-46eb-b2b9-44a50b5f4564	9b271d36-bb48-4d62-86ed-1660f35ce5c0	.	TIE1-1404	NM_005424	exon9	c.C1256T	p.A419V	TTCTTGCGGACAG	.	217	11	262	0	C|1.000;T|0.000	9	9	0	0	0	T	43775126	C	T	43775126	3	4	19	1	0	0	0	0	1	0	0	0	15930	768	27	1	1290	1	TIE1	1	43775126	Missense_Mutation	SNP	C	TCGA-OR-A5JQ-01A-11D-A29I-10	24361865	43775126	205475495	3	3541										
MAGI3	260425	bcgsc.ca	37	chr1	114196495	114196495	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0340909090909091	3	1	0.75	2	0.333333333333333	1	1	0	tctcaggccttcatttcaacAcagaatggatctccccgcct	6	15	4	1	rs2359173	byfrequency	TCGA-OR-A5JQ-01A-11D-A29I-10	TCGA-OR-A5JQ-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3b59a5b-bc3e-46eb-b2b9-44a50b5f4564	9b271d36-bb48-4d62-86ed-1660f35ce5c0	.	MAGI3-524	NM_152900	exon15	c.A2484G	p.T828T	TTCAACACAGAAT	.	94	5	88	0	A|0.803;G|0.197	3	3	0	0	0	G	114196495	A	G	114196495	2	3	19	1	0	0	0	0	0	0	0	1	9220	146	6	4		4	MAGI3	1	114196495	Silent	SNP	A	TCGA-OR-A5JQ-01A-11D-A29I-10	70421369	114196495	135054126	4	3542										
FLG	2312	bcgsc.ca	37	chr1	152281690	152281690	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0340909090909091	3	1	0.75	2	0.333333333333333	1	1	0	agtgtctagagctgtcggccCgagaggaagcttcatggtga	15	8	2	3	rs12407748	byfrequency	TCGA-OR-A5JQ-01A-11D-A29I-10	TCGA-OR-A5JQ-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3b59a5b-bc3e-46eb-b2b9-44a50b5f4564	9b271d36-bb48-4d62-86ed-1660f35ce5c0	.	FLG-106	NM_002016	exon3	c.G5672A	p.R1891Q	TCGGCCCGAGAGG	.	218	6	263	2	C|0.851;T|0.149	0	0	0	0	0	T	152281690	C	T	152281690	3	4	19	1	0	0	0	0	1	0	0	0	5941	652	23	1	6517	1	FLG	1	152281690	Missense_Mutation	SNP	C	TCGA-OR-A5JQ-01A-11D-A29I-10	38085195	152281690	96968931	5	3543										
CCDC19	25790	bcgsc.ca	37	chr1	159854251	159854251	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0340909090909091	3	1	0.75	2	0.333333333333333	1	1	0	gatcttcctcttggagctgtTccatatattccagcatctgc	7	12	3	0	rs16842789	byfrequency	TCGA-OR-A5JQ-01A-11D-A29I-10	TCGA-OR-A5JQ-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3b59a5b-bc3e-46eb-b2b9-44a50b5f4564	9b271d36-bb48-4d62-86ed-1660f35ce5c0	.	CCDC19-91	NM_012337	exon7	c.A872G	p.E291G	AGCTGTTCCATAT	.	52	4	84	0	T|0.884;C|0.116	0	0	0	0	0	C	159854251	T	C	159854251	3	2	19	1	0	0	0	0	1	0	0	0	2801	1783	62	4	807	4	CCDC19	1	159854251	Missense_Mutation	SNP	T	TCGA-OR-A5JQ-01A-11D-A29I-10	7572561	159854251	89396370	6	3544										
TMCO1	54499	broad.mit.edu	37	chr1	165712446	165712446	+	Frame_Shift_Del	DEL	G	G	-													0.0340909090909091	3	1	0.75	2	0.333333333333333	1	1	0	agaatatacaggaaaatgaaGgaacagtctgtggtgtcatc					novel		TCGA-OR-A5JQ-01A-11D-A29I-10	TCGA-OR-A5JQ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3b59a5b-bc3e-46eb-b2b9-44a50b5f4564	9b271d36-bb48-4d62-86ed-1660f35ce5c0	.	TMCO1-68	NM_019026	exon6	c.579delC	p.S193fs	AATGAAGGAACAG	.	343	13	356	0	.	0	0	0	0	0	-	165712446	G	-	165712446	7	5	19	1	0	1	0	1	0	0	0	0	16032	987	35	0	148	0	TMCO1	1	165712446	Frame_Shift_Del	DEL	G	TCGA-OR-A5JQ-01A-11D-A29I-10	5858195	165712446	83538175	7	3545										
CAPN9	10753	bcgsc.ca	37	chr1	230923313	230923313	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0340909090909091	3	1	0.75	2	0.333333333333333	1	1	0	aggagacagaggaggagcagCggtttcgggctctgtttgaa	17	6	1	3	rs12731961	byfrequency	TCGA-OR-A5JQ-01A-11D-A29I-10	TCGA-OR-A5JQ-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3b59a5b-bc3e-46eb-b2b9-44a50b5f4564	9b271d36-bb48-4d62-86ed-1660f35ce5c0	.	CAPN9-91	NM_006615	exon13	c.C1564T	p.R522W	GAGCAGCGGTTTC	.	76	5	88	1	C|0.793;T|0.207	0	0	0	0	0	T	230923313	C	T	230923313	3	4	19	1	0	0	0	0	1	0	0	0	2638	759	27	1	1614	1	CAPN9	1	230923313	Missense_Mutation	SNP	C	TCGA-OR-A5JQ-01A-11D-A29I-10	65210867	230923313	18327308	8	3546										
TTC13	79573	bcgsc.ca	37	chr1	231042732	231042732	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0340909090909091	3	1	0.75	2	0.333333333333333	1	1	0	aacgttggaaacgtttctgaTactgatggaagagtcttata	10	5	2	3	rs3811502	byfrequency	TCGA-OR-A5JQ-01A-11D-A29I-10	TCGA-OR-A5JQ-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3b59a5b-bc3e-46eb-b2b9-44a50b5f4564	9b271d36-bb48-4d62-86ed-1660f35ce5c0	.	TTC13-92	NM_024525	exon23	c.A2502T	p.V834V	TTCTGATACTGAT	.	185	10	236	0	T|0.505;A|0.495	6	6	0	0	0	A	231042732	T	A	231042732	2	1	19	1	0	0	0	0	0	0	0	1	16718	1393	49	5		5	TTC13	1	231042732	Silent	SNP	T	TCGA-OR-A5JQ-01A-11D-A29I-10	119419	231042732	18207889	9	3547										
LGALS8	3964	bcgsc.ca	37	chr1	236702374	236702374	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0340909090909091	3	1	0.75	2	0.333333333333333	1	1	0	gagatcgtgattatggtgctGaaggacaaattccaggtagg	14	5	0	3	rs2472126	byfrequency	TCGA-OR-A5JQ-01A-11D-A29I-10	TCGA-OR-A5JQ-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3b59a5b-bc3e-46eb-b2b9-44a50b5f4564	9b271d36-bb48-4d62-86ed-1660f35ce5c0	.	LGALS8-91	NM_006499	exon5	c.G330A	p.L110L	GGTGCTGAAGGAC	.	193	8	252	3	A|0.527;C|0.006;G|0.466	11	11	0	0	0	A	236702374	G	A	236702374	2	1	19	1	0	0	0	0	0	0	0	1	8770	1277	45	3		3	LGALS8	1	236702374	Silent	SNP	G	TCGA-OR-A5JQ-01A-11D-A29I-10	5659642	236702374	12548247	10	3548										
FAM179A	165186	bcgsc.ca	37	chr2	29256374	29256374	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0340909090909091	3	1	0.75	2	0.333333333333333	1	1	0	aacttccctctgccaaaggcCgcaaggtgttgaggagtctg	12	11	2	1	rs60403047	byfrequency	TCGA-OR-A5JQ-01A-11D-A29I-10	TCGA-OR-A5JQ-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3b59a5b-bc3e-46eb-b2b9-44a50b5f4564	9b271d36-bb48-4d62-86ed-1660f35ce5c0	.	FAM179A-26	NM_199280	exon16	c.C2170T	p.R724C	AAAGGCCGCAAGG	.	78	5	117	0	C|0.923;T|0.077	1	1	0	0	0	T	29256374	C	T	29256374	3	4	19	1	0	0	0	0	1	0	0	0	5521	652	23	1	2228	1	FAM179A	2	29256374	Missense_Mutation	SNP	C	TCGA-OR-A5JQ-01A-11D-A29I-10		29256374	213942999	11	3549										
ZNF638	27332	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr2	71650459	71650459	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.0340909090909091	3	1	0.75	2	0.333333333333333	1	1	0	agaaaaaaatgaaactgtttCggaaatattgccatcaactt	6	6	1	2	novel		TCGA-OR-A5JQ-01A-11D-A29I-10	TCGA-OR-A5JQ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3b59a5b-bc3e-46eb-b2b9-44a50b5f4564	9b271d36-bb48-4d62-86ed-1660f35ce5c0	.	ZNF638-94	NM_014497	exon22	c.C3815G	p.S1272W	CTGTTTCGGAAAT	.	159	8	172	0	.	18	18	0	0	0	G	71650459	C	G	71650459	3	3	19	1	0	0	0	0	1	0	0	0	18092	893	31	2	3897	2	ZNF638	2	71650459	Missense_Mutation	SNP	C	TCGA-OR-A5JQ-01A-11D-A29I-10	42394085	71650459	171548914	12	3550										
DYSF	8291	bcgsc.ca	37	chr2	71740958	71740958	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0340909090909091	3	1	0.75	2	0.333333333333333	1	1	0	accaccccaaggaaactaccTtcacgtcctccgccccacta	4	20	1	0	rs35392229	byfrequency	TCGA-OR-A5JQ-01A-11D-A29I-10	TCGA-OR-A5JQ-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3b59a5b-bc3e-46eb-b2b9-44a50b5f4564	9b271d36-bb48-4d62-86ed-1660f35ce5c0	.	DYSF-158	NM_001130982	exon7	c.T666C	p.P222P	ACTACCTTCACGT	.	125	7	167	3	T|0.971;C|0.029	0	0	0	0	0	C	71740958	T	C	71740958	2	2	19	1	0	0	0	0	0	0	0	1	4870	1596	56	4		4	DYSF	2	71740958	Silent	SNP	T	TCGA-OR-A5JQ-01A-11D-A29I-10	90499	71740958	171458415	13	3551										
RGPD4	285190	broad.mit.edu	37	chr2	108496435	108496435	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0340909090909091	3	1	0.75	2	0.333333333333333	1	1	0	atgttgcagagcctccattaTggcatgctgaatttaccaaa	8	9	0	2	rs832352	byfrequency	TCGA-OR-A5JQ-01A-11D-A29I-10	TCGA-OR-A5JQ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3b59a5b-bc3e-46eb-b2b9-44a50b5f4564	9b271d36-bb48-4d62-86ed-1660f35ce5c0	.	RGPD4-2	NM_182588	exon21	c.T4936A	p.W1646R	CCATTATGGCATG	.	208	5	242	0	T|0.295;A|0.705	2	2	0	0	0	A	108496435	T	A	108496435	3	1	19	1	0	0	0	0	1	0	0	0	13323	1464	51	5	5018	5	RGPD4	2	108496435	Missense_Mutation	SNP	T	TCGA-OR-A5JQ-01A-11D-A29I-10	36755477	108496435	134702938	14	3552										
ESPNL	339768	hgsc.bcm.edu	37	chr2	239009336	239009336	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0340909090909091	3	1	0.75	2	0.333333333333333	1	1	0	ctgtgctggctggtccgcgaGgggggctgcggtctgcaggt	20	10	1	0	rs61744770	byfrequency	TCGA-OR-A5JQ-01A-11D-A29I-10	TCGA-OR-A5JQ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3b59a5b-bc3e-46eb-b2b9-44a50b5f4564	9b271d36-bb48-4d62-86ed-1660f35ce5c0	.	ESPNL-69	NM_194312	exon1	c.G276A	p.E92E	CCGCGAGGGGGGC	.	7	7	0	0	G|0.739;A|0.261	0	0	0	0	0	A	239009336	G	A	239009336	2	1	19	1	0	0	0	0	0	0	0	1	5268	991	35	3		3	ESPNL	2	239009336	Silent	SNP	G	TCGA-OR-A5JQ-01A-11D-A29I-10	130512901	239009336	4190037	15	3553										
VILL	50853	bcgsc.ca	37	chr3	38038982	38038982	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0340909090909091	3	1	0.75	2	0.333333333333333	1	1	0	cctctcccgcaggggctggcTttgacctacagcctccggga	12	16	1	1	rs6809649	byfrequency	TCGA-OR-A5JQ-01A-11D-A29I-10	TCGA-OR-A5JQ-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3b59a5b-bc3e-46eb-b2b9-44a50b5f4564	9b271d36-bb48-4d62-86ed-1660f35ce5c0	.	VILL-90	NM_015873	exon6	c.T570C	p.A190A	GCTGGCTTTGACC	.	119	5	113	0	T|0.768;C|0.232	0	0	0	0	0	C	38038982	T	C	38038982	2	2	19	1	0	0	0	0	0	0	0	1	17203	1596	56	4		4	VILL	3	38038982	Silent	SNP	T	TCGA-OR-A5JQ-01A-11D-A29I-10		38038982	159983448	16	3554										
COL6A6	131873	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	130361853	130361853	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0340909090909091	3	1	0.75	2	0.333333333333333	1	1	0	atgtgagctcattcagtatgTgcgagaccgcagtcgtaagt	12	8	2	2	novel		TCGA-OR-A5JQ-01A-11D-A29I-10	TCGA-OR-A5JQ-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3b59a5b-bc3e-46eb-b2b9-44a50b5f4564	9b271d36-bb48-4d62-86ed-1660f35ce5c0	.	COL6A6-76	NM_001102608	exon30	c.T5213A	p.V1738E	AGTATGTGCGAGA	.	111	39	106	0	.	0	0	0	0	0	A	130361853	T	A	130361853	3	1	19	1	0	0	0	0	1	0	0	0	3709	1696	59	5	5331	5	COL6A6	3	130361853	Missense_Mutation	SNP	T	TCGA-OR-A5JQ-01A-11D-A29I-10	92322871	130361853	67660577	17	3555										
TSC22D2	9819	hgsc.bcm.edu	37	chr3	150128392	150128392	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0340909090909091	3	1	0.75	2	0.333333333333333	1	1	0	ccgtgggcaccggccagaatGcttcctcggtgggcgcgcag	16	14	0	1	rs879634	byfrequency	TCGA-OR-A5JQ-01A-11D-A29I-10	TCGA-OR-A5JQ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3b59a5b-bc3e-46eb-b2b9-44a50b5f4564	9b271d36-bb48-4d62-86ed-1660f35ce5c0	.	TSC22D2-91	NM_014779	exon1	c.G1255A	p.A419T	CAGAATGCTTCCT	.	17	9	0	0	G|0.797;A|0.203	1	1	0	0	0	A	150128392	G	A	150128392	3	1	19	1	0	0	0	0	1	0	0	0	16646	1319	46	3	1257	3	TSC22D2	3	150128392	Missense_Mutation	SNP	G	TCGA-OR-A5JQ-01A-11D-A29I-10	19766539	150128392	47894038	18	3556										
OTOP1	133060	hgsc.bcm.edu	37	chr4	4228472	4228472	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0340909090909091	3	1	0.75	2	0.333333333333333	1	1	0	ccccgccggggggccggggaTtccggggacctcggggccga	20	15	0	0	rs76810534		TCGA-OR-A5JQ-01A-11D-A29I-10	TCGA-OR-A5JQ-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3b59a5b-bc3e-46eb-b2b9-44a50b5f4564	9b271d36-bb48-4d62-86ed-1660f35ce5c0	.	OTOP1-92	NM_177998	exon1	c.A120G	p.E40E	CGGGGATTCCGGG	.	35	8	1	0	.	0	0	0	0	0	C	4228472	T	C	4228472	2	2	19	1	0	0	0	0	0	0	0	1	11334	1490	52	4		4	OTOP1	4	4228472	Silent	SNP	T	TCGA-OR-A5JQ-01A-11D-A29I-10		4228472	186925804	19	3557										
ZAR1	326340	hgsc.bcm.edu	37	chr4	48492434	48492434	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0340909090909091	3	1	0.75	2	0.333333333333333	1	1	0	gcgggcggcagctggcagcaGcgcggcaggggctgccttcc	19	14	0	0	rs10008444		TCGA-OR-A5JQ-01A-11D-A29I-10	TCGA-OR-A5JQ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3b59a5b-bc3e-46eb-b2b9-44a50b5f4564	9b271d36-bb48-4d62-86ed-1660f35ce5c0	.	ZAR1-90	NM_175619	exon1	c.G126C	p.Q42H	GCAGCAGCGCGGC	.	10	10	1	0	G|0.025;C|0.975	0	0	0	0	0	C	48492434	G	C	48492434	3	2	19	1	0	0	0	0	1	0	0	0	17553	962	34	3	128	3	ZAR1	4	48492434	Missense_Mutation	SNP	G	TCGA-OR-A5JQ-01A-11D-A29I-10	44263962	48492434	142661842	20	3558										
KIAA1211	57482	hgsc.bcm.edu	37	chr4	57180576	57180577	+	In_Frame_Ins	INS	-	-	GGAGCGGAG													0.0340909090909091	3	1	0.75	2	0.333333333333333	1	1	0	gcgccaggttgggaggacgcINSggagcggagggagcgtgagg					rs138358443	by1000genomes	TCGA-OR-A5JQ-01A-11D-A29I-10	TCGA-OR-A5JQ-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3b59a5b-bc3e-46eb-b2b9-44a50b5f4564	9b271d36-bb48-4d62-86ed-1660f35ce5c0	.	KIAA1211-70	NM_020722	exon8	c.908_909insGGAGCGGAG	p.A303delinsAERR	AGGACGCGGAGCG	.	31	20	2	0	.	0	0	0	0	0	GGAGCGGAG	57180577	-	GGAGCGGAG	57180576	7	5	19	1	0	1	1	0	0	0	0	0	8236	768	27	0	926	0	KIAA1211	4	57180576	In_Frame_Ins	INS	-	TCGA-OR-A5JQ-01A-11D-A29I-10	8688142	57180576	133973700	21	3559										
DSPP	1834	bcgsc.ca	37	chr4	88536520	88536520	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0340909090909091	3	1	0.75	2	0.333333333333333	1	1	0	gatagcagcaacagcagtgaTagtgacagcagtgatagcag	13	7	0	3	rs115476207	byfrequency	TCGA-OR-A5JQ-01A-11D-A29I-10	TCGA-OR-A5JQ-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3b59a5b-bc3e-46eb-b2b9-44a50b5f4564	9b271d36-bb48-4d62-86ed-1660f35ce5c0	.	DSPP-90	NM_014208	exon5	c.T2706C	p.D902D	CAGTGATAGTGAC	.	928	24	873	15	T|0.673;C|0.327	0	0	0	0	0	C	88536520	T	C	88536520	2	2	19	1	0	0	0	0	0	0	0	1	4793	1403	49	4		4	DSPP	4	88536520	Silent	SNP	T	TCGA-OR-A5JQ-01A-11D-A29I-10	31355944	88536520	102617756	22	3560										
ABLIM3	22885	broad.mit.edu	37	chr5	148637920	148637920	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0340909090909091	3	1	0.75	2	0.333333333333333	1	1	0	tctctgagtttgaccggctgGccctctggaagaggaatgaa	13	9	2	4	novel		TCGA-OR-A5JQ-01A-11D-A29I-10	TCGA-OR-A5JQ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3b59a5b-bc3e-46eb-b2b9-44a50b5f4564	9b271d36-bb48-4d62-86ed-1660f35ce5c0	.	ABLIM3-93	NM_014945	exon24	c.G2005T	p.A669S	CGGCTGGCCCTCT	.	52	4	51	1	.	3	3	0	0	0	T	148637920	G	T	148637920	3	4	19	1	0	0	0	0	1	0	0	0	96	1203	42	3	2095	3	ABLIM3	5	148637920	Missense_Mutation	SNP	G	TCGA-OR-A5JQ-01A-11D-A29I-10		148637920	32277340	23	3561										
CDHR2	54825	bcgsc.ca	37	chr5	176011889	176011889	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0340909090909091	3	1	0.75	2	0.333333333333333	1	1	0	tggggctggttctcagtggcGgccaacggctctgtgtacat	15	10	2	0	rs4868660	byfrequency	TCGA-OR-A5JQ-01A-11D-A29I-10	TCGA-OR-A5JQ-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3b59a5b-bc3e-46eb-b2b9-44a50b5f4564	9b271d36-bb48-4d62-86ed-1660f35ce5c0	.	CDHR2-70	NM_017675	exon19	c.G2607A	p.A869A	AGTGGCGGCCAAC	.	229	11	187	2	G|0.726;A|0.274	2	2	0	0	0	A	176011889	G	A	176011889	2	1	19	1	0	0	0	0	0	0	0	1	3125	1103	39	1		1	CDHR2	5	176011889	Silent	SNP	G	TCGA-OR-A5JQ-01A-11D-A29I-10	27373969	176011889	4903371	24	3562										
HUS1B	135458	hgsc.bcm.edu	37	chr6	656555	656555	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0340909090909091	3	1	0.75	2	0.333333333333333	1	1	0	agcacccgcacgggcagatcGtgcaccacgctgcgagcgcg	14	16	0	1	rs1766848	byfrequency	TCGA-OR-A5JQ-01A-11D-A29I-10	TCGA-OR-A5JQ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3b59a5b-bc3e-46eb-b2b9-44a50b5f4564	9b271d36-bb48-4d62-86ed-1660f35ce5c0	.	HUS1B-227	NM_148959	exon1	c.C390A	p.H130Q	CAGATCGTGCACC	.	10	6	0	0	G|0.938;T|0.062	0	0	0	0	0	T	656555	G	T	656555	3	4	19	1	0	0	0	0	1	0	0	0	7481	1136	40	2	450	2	HUS1B	6	656555	Missense_Mutation	SNP	G	TCGA-OR-A5JQ-01A-11D-A29I-10		656555	170458512	25	3563										
OR2J3	442186	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr6	29079940	29079940	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0340909090909091	3	1	0.75	2	0.333333333333333	1	1	0	ctggtcaatctctggggcccGgaaaagaccatctcttatgc	10	12	3	1	novel		TCGA-OR-A5JQ-01A-11D-A29I-10	TCGA-OR-A5JQ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3b59a5b-bc3e-46eb-b2b9-44a50b5f4564	9b271d36-bb48-4d62-86ed-1660f35ce5c0	.	OR2J3-90	NM_001005216	exon1	c.G273A	p.P91P	GGGCCCGGAAAAG	.	130	12	175	0	.	0	0	0	0	0	A	29079940	G	A	29079940	2	1	19	1	0	0	0	0	0	0	0	1	11033	1103	39	1		1	OR2J3	6	29079940	Silent	SNP	G	TCGA-OR-A5JQ-01A-11D-A29I-10	28423385	29079940	142035127	26	3564										
TMEM30A	55754	bcgsc.ca	37	chr6	75994151	75994151	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0340909090909091	3	1	0.75	2	0.333333333333333	1	1	0	atgttgttggaggtgacaaaAatgccaatgccgatgggaat	13	5	0	1	rs240374	byfrequency	TCGA-OR-A5JQ-01A-11D-A29I-10	TCGA-OR-A5JQ-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3b59a5b-bc3e-46eb-b2b9-44a50b5f4564	9b271d36-bb48-4d62-86ed-1660f35ce5c0	.	TMEM30A-90	NM_001143958	exon1	c.T204C	p.I68I	GACAAAAATGCCA	.	92	5	145	0	A|0.828;G|0.172	30	30	0	0	0	G	75994151	A	G	75994151	2	3	19	1	0	0	0	0	0	0	0	1	16190	10	1	4		4	TMEM30A	6	75994151	Silent	SNP	A	TCGA-OR-A5JQ-01A-11D-A29I-10	46914211	75994151	95120916	27	3565										
USP42	84132	hgsc.bcm.edu	37	chr7	6193464	6193464	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0340909090909091	3	1	0.75	2	0.333333333333333	1	1	0	cagccccgccgccgaatcccTggaggagccagatgcggccg	14	17	0	1	rs61732616	byfrequency	TCGA-OR-A5JQ-01A-11D-A29I-10	TCGA-OR-A5JQ-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3b59a5b-bc3e-46eb-b2b9-44a50b5f4564	9b271d36-bb48-4d62-86ed-1660f35ce5c0	.	USP42-659	NM_032172	exon15	c.T2279G	p.L760R	AATCCCTGGAGGA	.	26	9	2	0	T|0.731;G|0.269	4	2	2	0	0	G	6193464	T	G	6193464	3	3	19	1	0	0	0	0	1	0	0	0	17111	1580	55	5		5	USP42	7	6193464	Missense_Mutation	SNP	T	TCGA-OR-A5JQ-01A-11D-A29I-10		6193464	152945199	28	3566										
GARS	2617	hgsc.bcm.edu	37	chr7	30634661	30634661	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0340909090909091	3	1	0.75	2	0.333333333333333	1	1	0	ccctcagcgcggcctcctgcCccccgatctccttgcccgcc	8	24	2	0	rs1049402	byfrequency	TCGA-OR-A5JQ-01A-11D-A29I-10	TCGA-OR-A5JQ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3b59a5b-bc3e-46eb-b2b9-44a50b5f4564	9b271d36-bb48-4d62-86ed-1660f35ce5c0	.	GARS-91	NM_002047	exon1	c.C124G	p.P42A	TCCTGCCCCCCGA	.	14	14	0	0	C|0.329;G|0.671	12	0	12	0	0	G	30634661	C	G	30634661	3	3	19	1	0	0	0	0	1	0	0	0	6262	623	22	3	126	3	GARS	7	30634661	Missense_Mutation	SNP	C	TCGA-OR-A5JQ-01A-11D-A29I-10	24441197	30634661	128504002	29	3567										
MYO1G	64005	bcgsc.ca	37	chr7	45004063	45004063	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0340909090909091	3	1	0.75	2	0.333333333333333	1	1	0	ccccgaagccatctttgtccTgaagtgtctttagtcgctga	9	12	2	2	rs7792760	byfrequency	TCGA-OR-A5JQ-01A-11D-A29I-10	TCGA-OR-A5JQ-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3b59a5b-bc3e-46eb-b2b9-44a50b5f4564	9b271d36-bb48-4d62-86ed-1660f35ce5c0	.	MYO1G-137	NM_033054	exon19	c.A2582G	p.Q861R	TTGTCCTGAAGTG	.	116	5	118	1	C|0.890;N|0.000	5	5	0	0	0	C	45004063	T	C	45004063	3	2	19	1	0	0	0	0	1	0	0	0	10102	1580	55	4	490	4	MYO1G	7	45004063	Missense_Mutation	SNP	T	TCGA-OR-A5JQ-01A-11D-A29I-10	14369402	45004063	114134600	30	3568										
CFTR	1080	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr7	117242878	117242878	+	Splice_Site	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0340909090909091	3	1	0.75	2	0.333333333333333	1	1	0	actgtgtcttgttccattccAggtggctgcttctttggttg	11	9	2	0	novel		TCGA-OR-A5JQ-01A-11D-A29I-10	TCGA-OR-A5JQ-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3b59a5b-bc3e-46eb-b2b9-44a50b5f4564	9b271d36-bb48-4d62-86ed-1660f35ce5c0	.	CFTR-518	NM_000492	exon16	c.2620-2A>T	.	CATTCCAGGTGGC	.	213	13	176	0	.	0	0	0	0	0	T	117242878	A	T	117242878	5	4	19	1	0	0	0	0	0	0	1	0	3300	202	7	5	2680	5	CFTR	7	117242878	Splice_Site	SNP	A	TCGA-OR-A5JQ-01A-11D-A29I-10	72238815	117242878	41895785	31	3569										
EPHA1	2041	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	143098587	143098587	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0340909090909091	3	1	0.75	2	0.333333333333333	1	1	0	gcgggaagcctcctccccgcGgtagatccaattggagcgaa	13	13	0	1	novel		TCGA-OR-A5JQ-01A-11D-A29I-10	TCGA-OR-A5JQ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3b59a5b-bc3e-46eb-b2b9-44a50b5f4564	9b271d36-bb48-4d62-86ed-1660f35ce5c0	.	EPHA1-1436	NM_005232	exon3	c.C262A	p.R88S	CCCCGCGGTAGAT	.	169	21	149	1	.	0	0	0	0	0	T	143098587	G	T	143098587	3	4	19	1	0	0	0	0	1	0	0	0	5178	1116	39	2	2732	2	EPHA1	7	143098587	Missense_Mutation	SNP	G	TCGA-OR-A5JQ-01A-11D-A29I-10	25855709	143098587	16040076	32	3570										
CLDN23	137075	hgsc.bcm.edu	37	chr8	8560536	8560536	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0340909090909091	3	1	0.75	2	0.333333333333333	1	1	0	gcagcgtcagcaccatccaaGtggagtggcccgagcccgac	13	15	1	0	rs12548737	byfrequency	TCGA-OR-A5JQ-01A-11D-A29I-10	TCGA-OR-A5JQ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3b59a5b-bc3e-46eb-b2b9-44a50b5f4564	9b271d36-bb48-4d62-86ed-1660f35ce5c0	.	.	NM_194284	exon1	c.G628A	p.V210M	ATCCAAGTGGAGT	.	21	10	0	0	G|0.907;A|0.093	5	0	5	0	0	A	8560536	G	A	8560536	3	1	19	1	0	0	0	0	1	0	0	0	3490	1029	36	3	630	3	CLDN23	8	8560536	Missense_Mutation	SNP	G	TCGA-OR-A5JQ-01A-11D-A29I-10		8560536	137803486	33	3571										
ADAMDEC1	27299	bcgsc.ca	37	chr8	24261526	24261526	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0340909090909091	3	1	0.75	2	0.333333333333333	1	1	0	tgctttgaaggagtgtaccaAtctctgctgtgaagccctaa	10	9	1	2	rs3765124	byfrequency	TCGA-OR-A5JQ-01A-11D-A29I-10	TCGA-OR-A5JQ-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3b59a5b-bc3e-46eb-b2b9-44a50b5f4564	9b271d36-bb48-4d62-86ed-1660f35ce5c0	.	ADAMDEC1-228	NM_014479	exon13	c.A1331G	p.N444S	GTACCAATCTCTG	.	222	6	156	0	A|0.687;G|0.313	0	0	0	0	0	G	24261526	A	G	24261526	3	3	19	1	0	0	0	0	1	0	0	0	254	101	4	4	1381	4	ADAMDEC1	8	24261526	Missense_Mutation	SNP	A	TCGA-OR-A5JQ-01A-11D-A29I-10	15700990	24261526	122102496	34	3572										
CSMD3	114788	bcgsc.ca	37	chr8	113418839	113418839	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0340909090909091	3	1	0.75	2	0.333333333333333	1	1	0	ctatggatccatggagaataTatcctggattacaatcaaaa	7	7	1	1	novel		TCGA-OR-A5JQ-01A-11D-A29I-10	TCGA-OR-A5JQ-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3b59a5b-bc3e-46eb-b2b9-44a50b5f4564	9b271d36-bb48-4d62-86ed-1660f35ce5c0	.	CSMD3-1132	NM_198123	exon35	c.A5723G	p.Y1908C	AGAATATATCCTG	.	80	4	74	0	.	0	0	0	0	0	C	113418839	T	C	113418839	3	2	19	1	0	0	0	0	1	0	0	0	3952	1406	49	4	5548	4	CSMD3	8	113418839	Missense_Mutation	SNP	T	TCGA-OR-A5JQ-01A-11D-A29I-10	89157313	113418839	32945183	35	3573										
SCRIB	23513	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr8	144892937	144892937	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0340909090909091	3	1	0.75	2	0.333333333333333	1	1	0	atgacgctgacgcggctcggCggggcatcgctccaggtctc	15	14	1	2	novel		TCGA-OR-A5JQ-01A-11D-A29I-10	TCGA-OR-A5JQ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3b59a5b-bc3e-46eb-b2b9-44a50b5f4564	9b271d36-bb48-4d62-86ed-1660f35ce5c0	.	SCRIB-228	NM_015356	exon12	c.G1323T	p.P441P	GCTCGGCGGGGCA	.	50	19	24	0	.	9	3	6	0	0	A	144892937	C	A	144892937	2	1	19	1	0	0	0	0	0	0	0	1	13972	755	27	2		2	SCRIB	8	144892937	Silent	SNP	C	TCGA-OR-A5JQ-01A-11D-A29I-10	31474098	144892937	1471085	36	3574										
ABCA1	19	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr9	107568702	107568702	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0340909090909091	3	1	0.75	2	0.333333333333333	1	1	0	tcttcctcccctgcctggcaGggcgtgtctctgcaaaggga	12	14	2	0	novel		TCGA-OR-A5JQ-01A-11D-A29I-10	TCGA-OR-A5JQ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3b59a5b-bc3e-46eb-b2b9-44a50b5f4564	9b271d36-bb48-4d62-86ed-1660f35ce5c0	.	ABCA1-1016	NM_005502	exon31	c.C4284G	p.P1428P	CTGGCAGGGCGTG	.	113	37	120	0	.	0	0	0	0	0	C	107568702	G	C	107568702	2	2	19	1	0	0	0	0	0	0	0	1	28	987	35	3		3	ABCA1	9	107568702	Silent	SNP	G	TCGA-OR-A5JQ-01A-11D-A29I-10		107568702	33644729	37	3575										
GLE1	2733	hgsc.bcm.edu	37	chr9	131303399	131303399	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0340909090909091	3	1	0.75	2	0.333333333333333	1	1	0	agaaatgtttgcaacacaagGacattcctgtccccaagggc	9	11	0	1	novel		TCGA-OR-A5JQ-01A-11D-A29I-10	TCGA-OR-A5JQ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3b59a5b-bc3e-46eb-b2b9-44a50b5f4564	9b271d36-bb48-4d62-86ed-1660f35ce5c0	.	GLE1-22	NM_001003722	exon16	c.G2047T	p.D683Y	CACAAGGACATTC	.	80	5	82	0	.	28	28	0	0	0	T	131303399	G	T	131303399	3	4	19	1	0	0	0	0	1	0	0	0	6455	1174	41	3	2125	3	GLE1	9	131303399	Missense_Mutation	SNP	G	TCGA-OR-A5JQ-01A-11D-A29I-10	23734697	131303399	9910032	38	3576										
VAV2	7410	bcgsc.ca	37	chr9	136650966	136650966	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0340909090909091	3	1	0.75	2	0.333333333333333	1	1	0	ttgcagaaaaactggaagccCtgctttccttgaaggtgaat	10	8	0	3	rs142033790	byfrequency	TCGA-OR-A5JQ-01A-11D-A29I-10	TCGA-OR-A5JQ-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3b59a5b-bc3e-46eb-b2b9-44a50b5f4564	9b271d36-bb48-4d62-86ed-1660f35ce5c0	.	VAV2-1273	NM_001134398	exon17	c.G1464A	p.Q488Q	GAAGCCCTGCTTT	.	97	5	107	1	C|0.995;T|0.005	6	6	0	0	0	T	136650966	C	T	136650966	2	4	19	1	0	0	0	0	0	0	0	1	17170	680	24	3		3	VAV2	9	136650966	Silent	SNP	C	TCGA-OR-A5JQ-01A-11D-A29I-10	5347567	136650966	4562465	39	3577										
SLC34A3	142680	hgsc.bcm.edu	37	chr9	140128914	140128914	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0340909090909091	3	1	0.75	2	0.333333333333333	1	1	0	ggcggctacctggccgtcctCgcgggcgccggcctgacctt	15	17	0	1	rs113568956		TCGA-OR-A5JQ-01A-11D-A29I-10	TCGA-OR-A5JQ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3b59a5b-bc3e-46eb-b2b9-44a50b5f4564	9b271d36-bb48-4d62-86ed-1660f35ce5c0	.	SLC34A3-90	NM_001177317	exon11	c.C1140T	p.L380L	CGTCCTCGCGGGC	.	17	8	0	0	C|0.995;T|0.005	0	0	0	0	0	T	140128914	C	T	140128914	2	4	19	1	0	0	0	0	0	0	0	1	14604	871	31	1		1	SLC34A3	9	140128914	Silent	SNP	C	TCGA-OR-A5JQ-01A-11D-A29I-10	3477948	140128914	1084517	40	3578										
DLG5	9231	bcgsc.ca	37	chr10	79566632	79566632	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0340909090909091	3	1	0.75	2	0.333333333333333	1	1	0	tcatccacgtagaggatgtcGtccttcttaaagctcaactc	7	12	3	1	rs1058198	byfrequency	TCGA-OR-A5JQ-01A-11D-A29I-10	TCGA-OR-A5JQ-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3b59a5b-bc3e-46eb-b2b9-44a50b5f4564	9b271d36-bb48-4d62-86ed-1660f35ce5c0	.	DLG5-98	NM_004747	exon26	c.C4851T	p.D1617D	GATGTCGTCCTTC	.	130	8	191	1	G|0.688;A|0.312	20	20	0	0	0	A	79566632	G	A	79566632	2	1	19	1	0	0	0	0	0	0	0	1	4569	1136	40	1		1	DLG5	10	79566632	Silent	SNP	G	TCGA-OR-A5JQ-01A-11D-A29I-10		79566632	55968115	41	3579										
C10orf95	79946	hgsc.bcm.edu	37	chr10	104210735	104210735	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0340909090909091	3	1	0.75	2	0.333333333333333	1	1	0	tcccgggccggctgcggaagCtgtgggcctggactgggggt	20	11	0	0	rs2281878	byfrequency	TCGA-OR-A5JQ-01A-11D-A29I-10	TCGA-OR-A5JQ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3b59a5b-bc3e-46eb-b2b9-44a50b5f4564	9b271d36-bb48-4d62-86ed-1660f35ce5c0	.	C10orf95-91	NM_024886	exon2	c.G253T	p.A85S	CGGAAGCTGTGGG	.	7	6	0	0	C|0.759;A|0.241	0	0	0	0	0	A	104210735	C	A	104210735	3	1	19	1	0	0	0	0	1	0	0	0	1630	797	28	3	524	3	C10orf95	10	104210735	Missense_Mutation	SNP	C	TCGA-OR-A5JQ-01A-11D-A29I-10	24644103	104210735	31324012	42	3580										
NRAP	4892	bcgsc.ca	37	chr10	115375528	115375528	+	Silent	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0340909090909091	3	1	0.75	2	0.333333333333333	1	1	0	acttcagggaggtcagcagtCggtgtgtaatgatgctttat	13	6	2	1	rs11196397	byfrequency	TCGA-OR-A5JQ-01A-11D-A29I-10	TCGA-OR-A5JQ-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3b59a5b-bc3e-46eb-b2b9-44a50b5f4564	9b271d36-bb48-4d62-86ed-1660f35ce5c0	.	NRAP-522	NM_001261463	exon27	c.G3021T	p.P1007P	AGCAGTCGGTGTG	.	115	5	161	0	C|0.772;A|0.228	0	0	0	0	0	A	115375528	C	A	115375528	2	1	19	1	0	0	0	0	0	0	0	1	10667	871	31	2		2	NRAP	10	115375528	Silent	SNP	C	TCGA-OR-A5JQ-01A-11D-A29I-10	11164793	115375528	20159219	43	3581										
MUC5B	727897	hgsc.bcm.edu	37	chr11	1253980	1253980	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0340909090909091	3	1	0.75	2	0.333333333333333	1	1	0	caagggcgtacagctcagcgActggagggacggcgtctgca	16	11	2	0	rs202127660		TCGA-OR-A5JQ-01A-11D-A29I-10	TCGA-OR-A5JQ-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3b59a5b-bc3e-46eb-b2b9-44a50b5f4564	9b271d36-bb48-4d62-86ed-1660f35ce5c0	.	.	NM_002458	exon17	c.A2045G	p.D682G	TCAGCGACTGGAG	.	77	4	22	0	.	0	0	0	0	0	G	1253980	A	G	1253980	3	3	19	1	0	0	0	0	1	0	0	0	10007	275	10	4	2120	4	MUC5B	11	1253980	Missense_Mutation	SNP	A	TCGA-OR-A5JQ-01A-11D-A29I-10		1253980	133752536	44	3582										
PTPRJ	5795	bcgsc.ca	37	chr11	48152214	48152214	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0340909090909091	3	1	0.75	2	0.333333333333333	1	1	0	agtattgctttgaaatagttCcaaaaggaccaaatgggact	9	6	0	1	novel		TCGA-OR-A5JQ-01A-11D-A29I-10	TCGA-OR-A5JQ-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3b59a5b-bc3e-46eb-b2b9-44a50b5f4564	9b271d36-bb48-4d62-86ed-1660f35ce5c0	.	PTPRJ-541	NM_001098503	exon8	c.C1561T	p.P521S	ATAGTTCCAAAAG	.	128	5	172	0	.	2	2	0	0	0	T	48152214	C	T	48152214	3	4	19	1	0	0	0	0	1	0	0	0	12839	855	30	3	1591	3	PTPRJ	11	48152214	Missense_Mutation	SNP	C	TCGA-OR-A5JQ-01A-11D-A29I-10	46898234	48152214	86854302	45	3583										
CAPN1	823	bcgsc.ca	37	chr11	64950970	64950970	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0340909090909091	3	1	0.75	2	0.333333333333333	1	1	0	tgctggctcttggcggccatCgcctccctcactctcaacga	9	17	3	0	rs17583	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-OR-A5JQ-01A-11D-A29I-10	TCGA-OR-A5JQ-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3b59a5b-bc3e-46eb-b2b9-44a50b5f4564	9b271d36-bb48-4d62-86ed-1660f35ce5c0	.	CAPN1-91	NM_001198869	exon4	c.C363T	p.I121I	GGCCATCGCCTCC	.	116	5	191	0	C|0.734;T|0.266	42	42	0	0	0	T	64950970	C	T	64950970	2	4	19	1	0	0	0	0	0	0	0	1	2628	874	31	1		1	CAPN1	11	64950970	Silent	SNP	C	TCGA-OR-A5JQ-01A-11D-A29I-10	16798756	64950970	70055546	46	3584										
NPAS4	266743	bcgsc.ca	37	chr11	66189980	66189980	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0340909090909091	3	1	0.75	2	0.333333333333333	1	1	0	cattgacccagctgaccaccTcactgtgcgccagcaactca	7	17	2	2	novel		TCGA-OR-A5JQ-01A-11D-A29I-10	TCGA-OR-A5JQ-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3b59a5b-bc3e-46eb-b2b9-44a50b5f4564	9b271d36-bb48-4d62-86ed-1660f35ce5c0	.	NPAS4-90	NM_178864	exon3	c.T386A	p.L129H	ACCACCTCACTGT	.	163	6	181	1	.	0	0	0	0	0	A	66189980	T	A	66189980	3	1	19	1	0	0	0	0	1	0	0	0	10594	1551	54	5	396	5	NPAS4	11	66189980	Missense_Mutation	SNP	T	TCGA-OR-A5JQ-01A-11D-A29I-10	1239010	66189980	68816536	47	3585										
NUMA1	4926	broad.mit.edu	37	chr11	71715139	71715139	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0340909090909091	3	1	0.75	2	0.333333333333333	1	1	0	gaaggccatcgactggcgccGgtcagcctgcaaggaagggc	16	12	1	0	rs199699067		TCGA-OR-A5JQ-01A-11D-A29I-10	TCGA-OR-A5JQ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3b59a5b-bc3e-46eb-b2b9-44a50b5f4564	9b271d36-bb48-4d62-86ed-1660f35ce5c0	.	NUMA1-633	NM_006185	exon26	c.C6130T	p.R2044W	GGCGCCGGTCAGC	.	59	3	42	0	.	0	0	0	0	0	A	71715139	G	A	71715139	3	1	19	1	0	0	0	0	1	0	0	0	10779	1115	39	1	225	1	NUMA1	11	71715139	Missense_Mutation	SNP	G	TCGA-OR-A5JQ-01A-11D-A29I-10	5525159	71715139	63291377	48	3586										
PHOX2A	401	hgsc.bcm.edu	37	chr11	71954893	71954893	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0340909090909091	3	1	0.75	2	0.333333333333333	1	1	0	agtgcgcagttggaggagccGagcgcggggcagggcggccc	21	11	0	0	rs182932220		TCGA-OR-A5JQ-01A-11D-A29I-10	TCGA-OR-A5JQ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3b59a5b-bc3e-46eb-b2b9-44a50b5f4564	9b271d36-bb48-4d62-86ed-1660f35ce5c0	.	PHOX2A-90	NM_005169	exon1	c.C156T	p.L52L	GGAGCCGAGCGCG	.	9	8	0	0	G|0.980;A|0.020	0	0	0	0	0	A	71954893	G	A	71954893	2	1	19	1	0	0	0	0	0	0	0	1	11887	1045	37	1		1	PHOX2A	11	71954893	Silent	SNP	G	TCGA-OR-A5JQ-01A-11D-A29I-10	239754	71954893	63051623	49	3587										
TMPO	7112	bcgsc.ca	37	chr12	98927830	98927830	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0340909090909091	3	1	0.75	2	0.333333333333333	1	1	0	ctatgcaggcagacattagtCaagctgcacagattcttagc	9	10	2	2	rs17459334	byfrequency	TCGA-OR-A5JQ-01A-11D-A29I-10	TCGA-OR-A5JQ-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3b59a5b-bc3e-46eb-b2b9-44a50b5f4564	9b271d36-bb48-4d62-86ed-1660f35ce5c0	.	TMPO-93	NM_003276	exon4	c.C1795G	p.Q599E	ATTAGTCAAGCTG	.	128	5	55	0	C|0.934;G|0.066	25	25	0	0	0	G	98927830	C	G	98927830	3	3	19	1	0	0	0	0	1	0	0	0	16274	827	29	3	1809	3	TMPO	12	98927830	Missense_Mutation	SNP	C	TCGA-OR-A5JQ-01A-11D-A29I-10		98927830	34924065	50	3588										
GOLGA3	2802	bcgsc.ca	37	chr12	133372758	133372758	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0340909090909091	3	1	0.75	2	0.333333333333333	1	1	0	catcaggtccaggtgctcctGctgcaaagcctcaagctgct	10	14	2	0	novel		TCGA-OR-A5JQ-01A-11D-A29I-10	TCGA-OR-A5JQ-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3b59a5b-bc3e-46eb-b2b9-44a50b5f4564	9b271d36-bb48-4d62-86ed-1660f35ce5c0	.	GOLGA3-95	NM_001172557	exon11	c.C2149A	p.Q717K	GCTCCTGCTGCAA	.	57	5	59	0	.	16	16	0	0	0	T	133372758	G	T	133372758	3	4	19	1	0	0	0	0	1	0	0	0	6574	1328	46	3	2541	3	GOLGA3	12	133372758	Missense_Mutation	SNP	G	TCGA-OR-A5JQ-01A-11D-A29I-10	34444928	133372758	479137	51	3589										
NYNRIN	57523	bcgsc.ca	37	chr14	24878485	24878485	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0340909090909091	3	1	0.75	2	0.333333333333333	1	1	0	ctacaggctggaggtgagccGggggatcaagggagtatgca	18	7	1	1	rs12897153	byfrequency	TCGA-OR-A5JQ-01A-11D-A29I-10	TCGA-OR-A5JQ-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3b59a5b-bc3e-46eb-b2b9-44a50b5f4564	9b271d36-bb48-4d62-86ed-1660f35ce5c0	.	NYNRIN-3	NM_025081	exon4	c.G1485A	p.P495P	TGAGCCGGGGGAT	.	49	4	73	0	G|0.896;A|0.104	1	1	0	0	0	A	24878485	G	A	24878485	2	1	19	1	0	0	0	0	0	0	0	1	10825	1103	39	1		1	NYNRIN	14	24878485	Silent	SNP	G	TCGA-OR-A5JQ-01A-11D-A29I-10		24878485	82471055	52	3590										
NIN	51199	broad.mit.edu	37	chr14	51223460	51223460	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0340909090909091	3	1	0.75	2	0.333333333333333	1	1	0	agtagtgttttcctccagtaTaacttgattctgtactcttg	7	8	2	1	rs41299193	byfrequency	TCGA-OR-A5JQ-01A-11D-A29I-10	TCGA-OR-A5JQ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3b59a5b-bc3e-46eb-b2b9-44a50b5f4564	9b271d36-bb48-4d62-86ed-1660f35ce5c0	.	NIN-229	NM_020921	exon18	c.A4288T	p.I1430L	CCAGTATAACTTG	.	44	3	75	0	T|0.997;A|0.003	1	1	0	0	0	A	51223460	T	A	51223460	3	1	19	1	0	0	0	0	1	0	0	0	10446	1406	49	5	2317	5	NIN	14	51223460	Missense_Mutation	SNP	T	TCGA-OR-A5JQ-01A-11D-A29I-10	26344975	51223460	56126080	53	3591										
THBS1	7057	bcgsc.ca	37	chr15	39882178	39882178	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0340909090909091	3	1	0.75	2	0.333333333333333	1	1	0	agacctggatggctggcccaAtgagaacctggtgtgcgtgg	16	9	0	2	rs2228262	byfrequency	TCGA-OR-A5JQ-01A-11D-A29I-10	TCGA-OR-A5JQ-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3b59a5b-bc3e-46eb-b2b9-44a50b5f4564	9b271d36-bb48-4d62-86ed-1660f35ce5c0	.	THBS1-653	NM_003246	exon13	c.A2099G	p.N700S	GGCCCAATGAGAA	.	145	6	218	0	A|0.930;G|0.070	8	8	0	0	0	G	39882178	A	G	39882178	3	3	19	1	0	0	0	0	1	0	0	0	15890	101	4	4	2145	4	THBS1	15	39882178	Missense_Mutation	SNP	A	TCGA-OR-A5JQ-01A-11D-A29I-10		39882178	62649214	54	3592										
SPINT1	6692	bcgsc.ca	37	chr15	41148199	41148199	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0340909090909091	3	1	0.75	2	0.333333333333333	1	1	0	tttacctatggtggttgttaCggcaacaagaacaactttga	9	7	0	2	rs659232	byfrequency	TCGA-OR-A5JQ-01A-11D-A29I-10	TCGA-OR-A5JQ-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3b59a5b-bc3e-46eb-b2b9-44a50b5f4564	9b271d36-bb48-4d62-86ed-1660f35ce5c0	.	SPINT1-91	NM_181642	exon9	c.C1275T	p.Y425Y	TTGTTACGGCAAC	.	130	5	172	1	C|0.173;T|0.827	0	0	0	0	0	T	41148199	C	T	41148199	2	4	19	1	0	0	0	0	0	0	0	1	15105	547	19	1		1	SPINT1	15	41148199	Silent	SNP	C	TCGA-OR-A5JQ-01A-11D-A29I-10	1266021	41148199	61383193	55	3593										
LACTB	114294	hgsc.bcm.edu	37	chr15	63414083	63414083	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0340909090909091	3	1	0.75	2	0.333333333333333	1	1	0	gagacgccatgtaccggctcAtgtcagcagtgactgcccgg	13	13	2	2	rs34317102	byfrequency	TCGA-OR-A5JQ-01A-11D-A29I-10	TCGA-OR-A5JQ-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3b59a5b-bc3e-46eb-b2b9-44a50b5f4564	9b271d36-bb48-4d62-86ed-1660f35ce5c0	.	LACTB-90	NM_171846	exon1	c.A13C	p.M5L	CGGCTCATGTCAG	.	8	8	0	0	A|0.226;C|0.774	3	0	3	0	0	C	63414083	A	C	63414083	3	2	19	1	0	0	0	0	1	0	0	0	8619	217	8	5	15	5	LACTB	15	63414083	Missense_Mutation	SNP	A	TCGA-OR-A5JQ-01A-11D-A29I-10	22265884	63414083	39117309	56	3594										
LMAN1L	79748	bcgsc.ca	37	chr15	75113023	75113023	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0340909090909091	3	1	0.75	2	0.333333333333333	1	1	0	cagcagctccgcctggcgagGcagctggaagggctgtgggc	18	12	0	0	rs145422132	byfrequency	TCGA-OR-A5JQ-01A-11D-A29I-10	TCGA-OR-A5JQ-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3b59a5b-bc3e-46eb-b2b9-44a50b5f4564	9b271d36-bb48-4d62-86ed-1660f35ce5c0	.	LMAN1L-90	NM_021819	exon8	c.G822A	p.R274R	GGCGAGGCAGCTG	.	53	4	54	0	G|0.980;A|0.020	0	0	0	0	0	A	75113023	G	A	75113023	2	1	19	1	0	0	0	0	0	0	0	1	8861	1194	42	3		3	LMAN1L	15	75113023	Silent	SNP	G	TCGA-OR-A5JQ-01A-11D-A29I-10	11698940	75113023	27418369	57	3595										
PDIA2	64714	bcgsc.ca	37	chr16	336396	336396	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0340909090909091	3	1	0.75	2	0.333333333333333	1	1	0	accccctgattgggatcagcGgccagttaagaccctcgtgg	12	13	1	2	rs400037	byfrequency	TCGA-OR-A5JQ-01A-11D-A29I-10	TCGA-OR-A5JQ-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3b59a5b-bc3e-46eb-b2b9-44a50b5f4564	9b271d36-bb48-4d62-86ed-1660f35ce5c0	.	PDIA2-91	NM_006849	exon8	c.G1163A	p.R388Q	ATCAGCGGCCAGT	.	239	7	208	1	G|0.810;A|0.190	0	0	0	0	0	A	336396	G	A	336396	3	1	19	1	0	0	0	0	1	0	0	0	11697	1116	39	1	1193	1	PDIA2	16	336396	Missense_Mutation	SNP	G	TCGA-OR-A5JQ-01A-11D-A29I-10		336396	90018357	58	3596										
MEFV	4210	hgsc.bcm.edu	37	chr16	3304573	3304573	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0340909090909091	3	1	0.75	2	0.333333333333333	1	1	0	tgcgcgtccaggccctccgaGgccttctctctgcgtttgct	11	16	2	0	rs224223	byfrequency	TCGA-OR-A5JQ-01A-11D-A29I-10	TCGA-OR-A5JQ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3b59a5b-bc3e-46eb-b2b9-44a50b5f4564	9b271d36-bb48-4d62-86ed-1660f35ce5c0	.	MEFV-228	NM_000243	exon2	c.C495A	p.A165A	CTCCGAGGCCTTC	.	12	5	0	0	G|0.570;T|0.430	0	0	0	0	0	T	3304573	G	T	3304573	2	4	19	1	0	0	0	0	0	0	0	1	9487	987	35	3		3	MEFV	16	3304573	Silent	SNP	G	TCGA-OR-A5JQ-01A-11D-A29I-10	2968177	3304573	87050180	59	3597										
CCDC102A	92922	hgsc.bcm.edu	37	chr16	57562804	57562804	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0340909090909091	3	1	0.75	2	0.333333333333333	1	1	0	ggcagtgcagtccgaccaccGgcgcatggtcttctccatct	11	15	3	0	rs12935069		TCGA-OR-A5JQ-01A-11D-A29I-10	TCGA-OR-A5JQ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3b59a5b-bc3e-46eb-b2b9-44a50b5f4564	9b271d36-bb48-4d62-86ed-1660f35ce5c0	.	CCDC102A-91	NM_033212	exon2	c.C286T	p.R96W	ACCACCGGCGCAT	.	6	6	0	0	G|0.001;A|0.999	2	0	2	0	0	A	57562804	G	A	57562804	3	1	19	1	0	0	0	0	1	0	0	0	2742	1115	39	1	1398	1	CCDC102A	16	57562804	Missense_Mutation	SNP	G	TCGA-OR-A5JQ-01A-11D-A29I-10	54258231	57562804	32791949	60	3598										
GPR97	222487	bcgsc.ca	37	chr16	57722328	57722328	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0340909090909091	3	1	0.75	2	0.333333333333333	1	1	0	cagagcaccacagtctcctcCtctactgcaagattggacca	7	15	2	2	rs12444859	byfrequency	TCGA-OR-A5JQ-01A-11D-A29I-10	TCGA-OR-A5JQ-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3b59a5b-bc3e-46eb-b2b9-44a50b5f4564	9b271d36-bb48-4d62-86ed-1660f35ce5c0	.	GPR97-91	NM_170776	exon12	c.C1605T	p.S535S	CTCCTCCTCTACT	.	205	7	199	0	C|0.646;T|0.354	0	0	0	0	0	T	57722328	C	T	57722328	2	4	19	1	0	0	0	0	0	0	0	1	6741	668	24	3		3	GPR97	16	57722328	Silent	SNP	C	TCGA-OR-A5JQ-01A-11D-A29I-10	159524	57722328	32632425	61	3599										
ADAD2	161931	hgsc.bcm.edu	37	chr16	84224967	84224967	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0340909090909091	3	1	0.75	2	0.333333333333333	1	1	0	ccaggcccaaagtgcctgggGgcccgcgcccgcgcccgcga	15	19	0	0	rs8044695	byfrequency	TCGA-OR-A5JQ-01A-11D-A29I-10	TCGA-OR-A5JQ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3b59a5b-bc3e-46eb-b2b9-44a50b5f4564	9b271d36-bb48-4d62-86ed-1660f35ce5c0	.	ADAD2-68	NM_001145400	exon1	c.G131A	p.G44E	CCTGGGGGCCCGC	.	5	5	0	0	G|0.292;A|0.708	0	0	0	0	0	A	84224967	G	A	84224967	3	1	19	1	0	0	0	0	1	0	0	0	232	1232	43	3	133	3	ADAD2	16	84224967	Missense_Mutation	SNP	G	TCGA-OR-A5JQ-01A-11D-A29I-10	26502639	84224967	6129786	62	3600										
KIAA1609	57707	bcgsc.ca	37	chr16	84516309	84516309	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0340909090909091	3	1	0.75	2	0.333333333333333	1	1	0	atggagaacaggaagcatctGttgtcccctgaaagtagcca	11	9	1	2	rs433293	byfrequency	TCGA-OR-A5JQ-01A-11D-A29I-10	TCGA-OR-A5JQ-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3b59a5b-bc3e-46eb-b2b9-44a50b5f4564	9b271d36-bb48-4d62-86ed-1660f35ce5c0	.	KIAA1609-92	NM_020947	exon6	c.C966T	p.N322N	GCATCTGTTGTCC	.	367	12	317	4	G|0.625;A|0.375	0	0	0	0	0	A	84516309	G	A	84516309	2	1	19	1	0	0	0	0	0	0	0	1	8268	1368	48	3		3	KIAA1609	16	84516309	Silent	SNP	G	TCGA-OR-A5JQ-01A-11D-A29I-10	291342	84516309	5838444	63	3601										
ANKRD11	29123	hgsc.bcm.edu	37	chr16	89346883	89346883	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0340909090909091	3	1	0.75	2	0.333333333333333	1	1	0	gacgggcagagcgtacggggCaggagaggcgggaggggcgg	25	7	0	2	rs60520302	byfrequency	TCGA-OR-A5JQ-01A-11D-A29I-10	TCGA-OR-A5JQ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3b59a5b-bc3e-46eb-b2b9-44a50b5f4564	9b271d36-bb48-4d62-86ed-1660f35ce5c0	.	ANKRD11-139	NM_001256183	exon9	c.G6067C	p.A2023P	ACGGGGCAGGAGA	.	9	6	0	0	C|0.952;G|0.048	12	6	6	0	0	G	89346883	C	G	89346883	3	3	19	1	0	0	0	0	1	0	0	0	639	710	25	3	1944	3	ANKRD11	16	89346883	Missense_Mutation	SNP	C	TCGA-OR-A5JQ-01A-11D-A29I-10	4830574	89346883	1007870	64	3602										
GAS8	2622	bcgsc.ca	37	chr16	90102835	90102835	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0340909090909091	3	1	0.75	2	0.333333333333333	1	1	0	atgaagatgctgagggacgaActcgacttgcggagaaagac	14	7	0	5	rs868045	byfrequency	TCGA-OR-A5JQ-01A-11D-A29I-10	TCGA-OR-A5JQ-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3b59a5b-bc3e-46eb-b2b9-44a50b5f4564	9b271d36-bb48-4d62-86ed-1660f35ce5c0	.	GAS8-227	NM_001481	exon6	c.A597G	p.E199E	GGACGAACTCGAC	.	356	9	332	0	A|0.644;G|0.356	34	34	0	0	0	G	90102835	A	G	90102835	2	3	19	1	0	0	0	0	0	0	0	1	6271	40	2	4		4	GAS8	16	90102835	Silent	SNP	A	TCGA-OR-A5JQ-01A-11D-A29I-10	755952	90102835	251918	65	3603										
ASB16	92591	hgsc.bcm.edu	37	chr17	42254236	42254236	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0340909090909091	3	1	0.75	2	0.333333333333333	1	1	0	ctctgtacctggagcatggcGccgacgtgggcctgcgcacc	14	15	1	0	rs74491716	byfrequency	TCGA-OR-A5JQ-01A-11D-A29I-10	TCGA-OR-A5JQ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3b59a5b-bc3e-46eb-b2b9-44a50b5f4564	9b271d36-bb48-4d62-86ed-1660f35ce5c0	.	ASB16-227	NM_080863	exon3	c.G700A	p.A234T	CATGGCGCCGACG	.	33	20	2	0	G|0.984;A|0.016	5	5	0	0	0	A	42254236	G	A	42254236	3	1	19	1	0	0	0	0	1	0	0	0	1021	1087	38	1	710	1	ASB16	17	42254236	Missense_Mutation	SNP	G	TCGA-OR-A5JQ-01A-11D-A29I-10		42254236	38940974	66	3604										
ASB16	92591	hgsc.bcm.edu	37	chr17	42254281	42254281	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0340909090909091	3	1	0.75	2	0.333333333333333	1	1	0	agggcgagactgcgctgaacAcggcgtgcgctggggccgag	19	11	0	2	rs7212573	byfrequency	TCGA-OR-A5JQ-01A-11D-A29I-10	TCGA-OR-A5JQ-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3b59a5b-bc3e-46eb-b2b9-44a50b5f4564	9b271d36-bb48-4d62-86ed-1660f35ce5c0	.	ASB16-227	NM_080863	exon3	c.A745G	p.T249A	CTGAACACGGCGT	.	8	6	0	0	A|0.476;G|0.524	0	0	0	0	0	G	42254281	A	G	42254281	3	3	19	1	0	0	0	0	1	0	0	0	1021	159	6	4	755	4	ASB16	17	42254281	Missense_Mutation	SNP	A	TCGA-OR-A5JQ-01A-11D-A29I-10	45	42254281	38940929	67	3605										
COG1	9382	hgsc.bcm.edu	37	chr17	71189428	71189428	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0340909090909091	3	1	0.75	2	0.333333333333333	1	1	0	gccagatgcgccgctgcgccGtggggctagtggacgccgtg	18	13	0	1	novel		TCGA-OR-A5JQ-01A-11D-A29I-10	TCGA-OR-A5JQ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3b59a5b-bc3e-46eb-b2b9-44a50b5f4564	9b271d36-bb48-4d62-86ed-1660f35ce5c0	.	COG1-91	NM_018714	exon1	c.G220C	p.V74L	TGCGCCGTGGGGC	.	117	37	3	0	.	7	5	2	0	0	C	71189428	G	C	71189428	3	2	19	1	0	0	0	0	1	0	0	0	3663	1145	40	2	222	2	COG1	17	71189428	Missense_Mutation	SNP	G	TCGA-OR-A5JQ-01A-11D-A29I-10	28935147	71189428	10005782	68	3606										
SLC9A3R1	9368	hgsc.bcm.edu	37	chr17	72745313	72745313	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0340909090909091	3	1	0.75	2	0.333333333333333	1	1	0	gcgtccaggtccgagaggagCtgctgcgcgcccaggaagcg	17	13	0	1	rs35910969	byfrequency	TCGA-OR-A5JQ-01A-11D-A29I-10	TCGA-OR-A5JQ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3b59a5b-bc3e-46eb-b2b9-44a50b5f4564	9b271d36-bb48-4d62-86ed-1660f35ce5c0	.	SLC9A3R1-90	NM_004252	exon1	c.C328G	p.L110V	GAGGAGCTGCTGC	.	9	5	0	0	C|0.988;G|0.012	23	10	13	0	0	G	72745313	C	G	72745313	3	3	19	1	0	0	0	0	1	0	0	0	14749	796	28	3	330	3	SLC9A3R1	17	72745313	Missense_Mutation	SNP	C	TCGA-OR-A5JQ-01A-11D-A29I-10	1555885	72745313	8449897	69	3607										
TNRC6C	57690	hgsc.bcm.edu	37	chr17	76100842	76100842	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0340909090909091	3	1	0.75	2	0.333333333333333	1	1	0	agcctgtggggcccgcccagCgccgacgacagcagggtgat	16	14	0	1	novel		TCGA-OR-A5JQ-01A-11D-A29I-10	TCGA-OR-A5JQ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3b59a5b-bc3e-46eb-b2b9-44a50b5f4564	9b271d36-bb48-4d62-86ed-1660f35ce5c0	.	TNRC6C-24	NM_001142640	exon22	c.C5097T	p.S1699S	GCCCAGCGCCGAC	.	23	9	0	0	.	3	3	0	0	0	T	76100842	C	T	76100842	2	4	19	1	0	0	0	0	0	0	0	1	16379	767	27	1		1	TNRC6C	17	76100842	Silent	SNP	C	TCGA-OR-A5JQ-01A-11D-A29I-10	3355529	76100842	5094368	70	3608										
FSCN2	25794	hgsc.bcm.edu	37	chr17	79504073	79504073	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0340909090909091	3	1	0.75	2	0.333333333333333	1	1	0	ctgctgcgggccgatgccgaCgccccggccgggaccgcgct	16	18	0	0	rs143561119	by1000genomes	TCGA-OR-A5JQ-01A-11D-A29I-10	TCGA-OR-A5JQ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3b59a5b-bc3e-46eb-b2b9-44a50b5f4564	9b271d36-bb48-4d62-86ed-1660f35ce5c0	.	.	NM_001077182	exon5	c.C1518T	p.D506D	TGCCGACGCCCCG	.	8	7	0	0	C|0.964;T|0.036	0	0	0	0	0	T	79504073	C	T	79504073	2	4	19	1	0	0	0	0	0	0	0	1	6087	535	19	1		1	FSCN2	17	79504073	Silent	SNP	C	TCGA-OR-A5JQ-01A-11D-A29I-10	3403231	79504073	1691137	71	3609										
UTS2R	2837	hgsc.bcm.edu	37	chr17	80332223	80332223	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0340909090909091	3	1	0.75	2	0.333333333333333	1	1	0	ggcgctgacccccgagtcccCgagcagcttccctgggctgg	14	17	0	1	rs41344948	byfrequency	TCGA-OR-A5JQ-01A-11D-A29I-10	TCGA-OR-A5JQ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3b59a5b-bc3e-46eb-b2b9-44a50b5f4564	9b271d36-bb48-4d62-86ed-1660f35ce5c0	.	UTS2R-153	NM_018949	exon1	c.C23G	p.P8R	AGTCCCCGAGCAG	.	17	10	0	0	C|0.990;G|0.010	0	0	0	0	0	G	80332223	C	G	80332223	3	3	19	1	0	0	0	0	1	0	0	0	17144	652	23	2	25	2	UTS2R	17	80332223	Missense_Mutation	SNP	C	TCGA-OR-A5JQ-01A-11D-A29I-10	828150	80332223	862987	72	3610										
POLRMT	5442	hgsc.bcm.edu	37	chr19	622326	622326	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0340909090909091	3	1	0.75	2	0.333333333333333	1	1	0	tgctcccgcagggcctcgggCgcccccagctcctcccagta	11	20	0	0	rs61746452	byfrequency	TCGA-OR-A5JQ-01A-11D-A29I-10	TCGA-OR-A5JQ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3b59a5b-bc3e-46eb-b2b9-44a50b5f4564	9b271d36-bb48-4d62-86ed-1660f35ce5c0	.	POLRMT-92	NM_005035	exon9	c.G1674C	p.A558A	CTCGGGCGCCCCC	.	42	12	0	0	C|0.027;G|0.973	12	12	0	0	0	G	622326	C	G	622326	2	3	19	1	0	0	0	0	0	0	0	1	12267	755	27	2		2	POLRMT	19	622326	Silent	SNP	C	TCGA-OR-A5JQ-01A-11D-A29I-10		622326	58506657	73	3611										
ARID3A	1820	hgsc.bcm.edu	37	chr19	929753	929753	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0340909090909091	3	1	0.75	2	0.333333333333333	1	1	0	gctgcgggcctgggacacccAgccagccccggcggctctga	15	17	1	1	rs1799595		TCGA-OR-A5JQ-01A-11D-A29I-10	TCGA-OR-A5JQ-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3b59a5b-bc3e-46eb-b2b9-44a50b5f4564	9b271d36-bb48-4d62-86ed-1660f35ce5c0	.	ARID3A-90	NM_005224	exon2	c.A225G	p.P75P	ACACCCAGCCAGC	.	4	4	0	0	A|0.114;G|0.886	2	0	2	0	0	G	929753	A	G	929753	2	3	19	1	0	0	0	0	0	0	0	1	916	175	7	4		4	ARID3A	19	929753	Silent	SNP	A	TCGA-OR-A5JQ-01A-11D-A29I-10	307427	929753	58199230	74	3612										
FBN3	84467	bcgsc.ca	37	chr19	8176919	8176919	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0340909090909091	3	1	0.75	2	0.333333333333333	1	1	0	cacctacagctgaaactcccCgggatgttgagacaggaggc	12	12	0	2	rs4804264	byfrequency	TCGA-OR-A5JQ-01A-11D-A29I-10	TCGA-OR-A5JQ-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3b59a5b-bc3e-46eb-b2b9-44a50b5f4564	9b271d36-bb48-4d62-86ed-1660f35ce5c0	.	FBN3-100	NM_032447	exon30	c.G3903A	p.P1301P	ACTCCCCGGGATG	.	278	9	265	3	C|0.388;N|0.000	0	0	0	0	0	T	8176919	C	T	8176919	2	4	19	1	0	0	0	0	0	0	0	1	5723	639	23	1		1	FBN3	19	8176919	Silent	SNP	C	TCGA-OR-A5JQ-01A-11D-A29I-10	7247166	8176919	50952064	75	3613										
OR1I1	126370	bcgsc.ca	37	chr19	15198851	15198851	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0340909090909091	3	1	0.75	2	0.333333333333333	1	1	0	ttggatgtttatcatgttccAggatcactgttggctgctag	11	7	2	0	rs16980313	byfrequency	TCGA-OR-A5JQ-01A-11D-A29I-10	TCGA-OR-A5JQ-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3b59a5b-bc3e-46eb-b2b9-44a50b5f4564	9b271d36-bb48-4d62-86ed-1660f35ce5c0	.	OR1I1-71	NM_001004713	exon1	c.A975T	p.P325P	TGTTCCAGGATCA	.	276	8	268	2	A|0.868;T|0.132	0	0	0	0	0	T	15198851	A	T	15198851	2	4	19	1	0	0	0	0	0	0	0	1	10987	175	7	5		5	OR1I1	19	15198851	Silent	SNP	A	TCGA-OR-A5JQ-01A-11D-A29I-10	7021932	15198851	43930132	76	3614										
OCEL1	79629	hgsc.bcm.edu	37	chr19	17337557	17337557	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0340909090909091	3	1	0.75	2	0.333333333333333	1	1	0	cgacgccccccgcaggacccGcccatcagcccggaaacccc	9	23	1	0	rs10425488	byfrequency	TCGA-OR-A5JQ-01A-11D-A29I-10	TCGA-OR-A5JQ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3b59a5b-bc3e-46eb-b2b9-44a50b5f4564	9b271d36-bb48-4d62-86ed-1660f35ce5c0	.	OCEL1-68	NM_024578	exon2	c.G125T	p.R42L	GGACCCGCCCATC	.	11	5	0	0	G|0.934;T|0.066	20	12	8	0	0	T	17337557	G	T	17337557	3	4	19	1	0	0	0	0	1	0	0	0	10845	1087	38	2	131	2	OCEL1	19	17337557	Missense_Mutation	SNP	G	TCGA-OR-A5JQ-01A-11D-A29I-10	2138706	17337557	41791426	77	3615										
PGLS	25796	hgsc.bcm.edu	37	chr19	17622614	17622614	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0340909090909091	3	1	0.75	2	0.333333333333333	1	1	0	gcgcccgtttcgcgctcggcCtgtcgggcgggagcctcgtc	16	16	0	0	rs11086075	byfrequency	TCGA-OR-A5JQ-01A-11D-A29I-10	TCGA-OR-A5JQ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3b59a5b-bc3e-46eb-b2b9-44a50b5f4564	9b271d36-bb48-4d62-86ed-1660f35ce5c0	.	PGLS-90	NM_012088	exon1	c.C133T	p.L45L	CTCGGCCTGTCGG	.	4	4	0	0	C|0.617;T|0.383	11	5	6	0	0	T	17622614	C	T	17622614	2	4	19	1	0	0	0	0	0	0	0	1	11821	680	24	3		3	PGLS	19	17622614	Silent	SNP	C	TCGA-OR-A5JQ-01A-11D-A29I-10	285057	17622614	41506369	78	3616										
CCDC124	115098	bcgsc.ca	37	chr19	18047283	18047283	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0340909090909091	3	1	0.75	2	0.333333333333333	1	1	0	tcggcagcggcccgggcacgTagggcagaggccaaggcggc	19	13	0	1	rs4808722	byfrequency	TCGA-OR-A5JQ-01A-11D-A29I-10	TCGA-OR-A5JQ-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3b59a5b-bc3e-46eb-b2b9-44a50b5f4564	9b271d36-bb48-4d62-86ed-1660f35ce5c0	.	CCDC124-68	NM_138442	exon2	c.T54G	p.R18R	GGCACGTAGGGCA	.	306	11	166	2	T|0.594;G|0.406	139	138	0	0	1	G	18047283	T	G	18047283	2	3	19	1	0	0	0	0	0	0	0	1	2766	1625	57	5		5	CCDC124	19	18047283	Silent	SNP	T	TCGA-OR-A5JQ-01A-11D-A29I-10	424669	18047283	41081700	79	3617										
FAM187B	148109	bcgsc.ca	37	chr19	35719257	35719257	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0340909090909091	3	1	0.75	2	0.333333333333333	1	1	0	agggtggtgacatcctgaaaGtcaatttcatactgcaccac	9	10	2	2	rs11673347	byfrequency	TCGA-OR-A5JQ-01A-11D-A29I-10	TCGA-OR-A5JQ-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3b59a5b-bc3e-46eb-b2b9-44a50b5f4564	9b271d36-bb48-4d62-86ed-1660f35ce5c0	.	FAM187B-92	NM_152481	exon1	c.C327T	p.D109D	CTGAAAGTCAATT	.	172	6	147	0	G|0.613;A|0.386	0	0	0	0	0	A	35719257	G	A	35719257	2	1	19	1	0	0	0	0	0	0	0	1	5529	1020	36	3		3	FAM187B	19	35719257	Silent	SNP	G	TCGA-OR-A5JQ-01A-11D-A29I-10	17671974	35719257	23409726	80	3618										
SPTBN4	57731	hgsc.bcm.edu	37	chr19	41073913	41073913	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0340909090909091	3	1	0.75	2	0.333333333333333	1	1	0	cccgcggcggcggagcaggtGcggccacgaccggagcgcca	18	16	0	0	novel		TCGA-OR-A5JQ-01A-11D-A29I-10	TCGA-OR-A5JQ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3b59a5b-bc3e-46eb-b2b9-44a50b5f4564	9b271d36-bb48-4d62-86ed-1660f35ce5c0	.	SPTBN4-94	NM_020971	exon31	c.G6681C	p.V2227V	GCAGGTGCGGCCA	.	12	6	1	0	.	0	0	0	0	0	C	41073913	G	C	41073913	2	2	19	1	0	0	0	0	0	0	0	1	15158	1306	46	3		3	SPTBN4	19	41073913	Silent	SNP	G	TCGA-OR-A5JQ-01A-11D-A29I-10	5354656	41073913	18055070	81	3619										
ZNF227	7770	bcgsc.ca	37	chr19	44739303	44739303	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0340909090909091	3	1	0.75	2	0.333333333333333	1	1	0	atcattagtgatggctccaaTcagaaattacccttaggaga	8	8	2	3	rs2279073	byfrequency	TCGA-OR-A5JQ-01A-11D-A29I-10	TCGA-OR-A5JQ-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3b59a5b-bc3e-46eb-b2b9-44a50b5f4564	9b271d36-bb48-4d62-86ed-1660f35ce5c0	.	ZNF227-91	NM_182490	exon6	c.T720C	p.N240N	CTCCAATCAGAAA	.	51	4	35	0	T|0.587;C|0.413	15	15	0	0	0	C	44739303	T	C	44739303	2	2	19	1	0	0	0	0	0	0	0	1	17818	1432	50	4		4	ZNF227	19	44739303	Silent	SNP	T	TCGA-OR-A5JQ-01A-11D-A29I-10	3665390	44739303	14389680	82	3620										
SIX5	147912	hgsc.bcm.edu	37	chr19	46269148	46269148	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0340909090909091	3	1	0.75	2	0.333333333333333	1	1	0	aagggtgcctagggcgtgagCctctgggagagcagggctgg	20	8	1	2	novel		TCGA-OR-A5JQ-01A-11D-A29I-10	TCGA-OR-A5JQ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3b59a5b-bc3e-46eb-b2b9-44a50b5f4564	9b271d36-bb48-4d62-86ed-1660f35ce5c0	.	SIX5-91	NM_175875	exon3	c.G1831A	p.A611T	CGTGAGCCTCTGG	.	24	16	1	0	.	50	30	20	0	0	T	46269148	C	T	46269148	3	4	19	1	0	0	0	0	1	0	0	0	14385	739	26	3	392	3	SIX5	19	46269148	Missense_Mutation	SNP	C	TCGA-OR-A5JQ-01A-11D-A29I-10	1529845	46269148	12859835	83	3621										
PTGIR	5739	hgsc.bcm.edu	37	chr19	47127324	47127324	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0340909090909091	3	1	0.75	2	0.333333333333333	1	1	0	tcggtggccgccagtccggtCaccagcaccgcgaaggccga	14	16	1	0	rs2229128	byfrequency	TCGA-OR-A5JQ-01A-11D-A29I-10	TCGA-OR-A5JQ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3b59a5b-bc3e-46eb-b2b9-44a50b5f4564	9b271d36-bb48-4d62-86ed-1660f35ce5c0	.	PTGIR-522	NM_000960	exon2	c.G159C	p.V53V	TCCGGTCACCAGC	.	8	7	0	0	C|0.254;G|0.746	1	0	1	0	0	G	47127324	C	G	47127324	2	3	19	1	0	0	0	0	0	0	0	1	12784	813	29	3		3	PTGIR	19	47127324	Silent	SNP	C	TCGA-OR-A5JQ-01A-11D-A29I-10	858176	47127324	12001659	84	3622										
ZCCHC3	85364	hgsc.bcm.edu	37	chr20	278515	278515	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0340909090909091	3	1	0.75	2	0.333333333333333	1	1	0	ccaccggctggccgcggggaTccgaagggccgtcggagaga	18	13	0	1	rs2223665	byfrequency	TCGA-OR-A5JQ-01A-11D-A29I-10	TCGA-OR-A5JQ-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3b59a5b-bc3e-46eb-b2b9-44a50b5f4564	9b271d36-bb48-4d62-86ed-1660f35ce5c0	.	ZCCHC3-90	NM_033089	exon1	c.T288C	p.D96D	CGGGGATCCGAAG	.	7	7	0	0	T|0.454;C|0.546	1	0	1	0	0	C	278515	T	C	278515	2	2	19	1	0	0	0	0	0	0	0	1	17626	1432	50	4		4	ZCCHC3	20	278515	Silent	SNP	T	TCGA-OR-A5JQ-01A-11D-A29I-10		278515	62747005	85	3623										
COX4I2	84701	bcgsc.ca	37	chr20	30232673	30232673	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0340909090909091	3	1	0.75	2	0.333333333333333	1	1	0	tgtgcagggcctggcctcccGctgggactatgagaagaagc	15	11	0	2	rs11907253	byfrequency	TCGA-OR-A5JQ-01A-11D-A29I-10	TCGA-OR-A5JQ-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3b59a5b-bc3e-46eb-b2b9-44a50b5f4564	9b271d36-bb48-4d62-86ed-1660f35ce5c0	.	COX4I2-227	NM_032609	exon5	c.G482A	p.R161H	CCTCCCGCTGGGA	.	176	8	171	3	G|0.919;A|0.081	7	7	0	0	0	A	30232673	G	A	30232673	3	1	19	1	0	0	0	0	1	0	0	0	3776	1087	38	1	496	1	COX4I2	20	30232673	Missense_Mutation	SNP	G	TCGA-OR-A5JQ-01A-11D-A29I-10	29954158	30232673	32792847	86	3624										
DIDO1	11083	hgsc.bcm.edu	37	chr20	61510599	61510599	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0340909090909091	3	1	0.75	2	0.333333333333333	1	1	0	gggcgtctaggcctgcgaggCggtgccagcgtcggaggccc	19	13	1	0	novel		TCGA-OR-A5JQ-01A-11D-A29I-10	TCGA-OR-A5JQ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3b59a5b-bc3e-46eb-b2b9-44a50b5f4564	9b271d36-bb48-4d62-86ed-1660f35ce5c0	.	DIDO1-96	NM_001193369	exon16	c.G6709A	p.A2237T	GCGAGGCGGTGCC	.	33	14	3	0	.	2	1	1	0	0	T	61510599	C	T	61510599	3	4	19	1	0	0	0	0	1	0	0	0	4533	768	27	1	17	1	DIDO1	20	61510599	Missense_Mutation	SNP	C	TCGA-OR-A5JQ-01A-11D-A29I-10	31277926	61510599	1514921	87	3625										
SCARF2	91179	hgsc.bcm.edu	37	chr22	20780296	20780296	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0340909090909091	3	1	0.75	2	0.333333333333333	1	1	0	gcttggtggcggggtcaggtGgcggcggtttcctgcgctcg	20	10	1	0	rs9680797	byfrequency	TCGA-OR-A5JQ-01A-11D-A29I-10	TCGA-OR-A5JQ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3b59a5b-bc3e-46eb-b2b9-44a50b5f4564	9b271d36-bb48-4d62-86ed-1660f35ce5c0	.	SCARF2-341	NM_153334	exon11	c.C1982T	p.P661L	TCAGGTGGCGGCG	.	20	19	0	0	G|0.977;A|0.023	0	0	0	0	0	A	20780296	G	A	20780296	3	1	19	1	0	0	0	0	1	0	0	0	13919	1348	47	3	634	3	SCARF2	22	20780296	Missense_Mutation	SNP	G	TCGA-OR-A5JQ-01A-11D-A29I-10		20780296	30524270	88	3626										
LCE1E	353135	bcgsc.ca	37	chr1	152760096	152760096	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0289855072463768	2	1	0.718138321009134	1.36446280991736	0.487308146399056	1	1	0	gggggctccagctgctgtggAgggggcagcggccagcactc	19	12	0	0	rs115864544	bycluster;byfrequency;by1000genomes	TCGA-OR-A5JR-01A-11D-A29I-10	TCGA-OR-A5JR-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6625a9c0-ac73-4f14-a02d-7a8e64f7b2bb	8ea6498c-da66-42fc-bb2a-b4f5e02c0438	.	LCE1E-90	NM_178353	exon2	c.A321T	p.G107G	CTGTGGAGGGGGC	.	80	49	170	29	A|0.901;T|0.099	0	0	0	0	0	T	152760096	A	T	152760096	2	4	20	1	0	0	0	0	0	0	0	1	8685	291	11	5		5	LCE1E	1	152760096	Silent	SNP	A	TCGA-OR-A5JR-01A-11D-A29I-10		152760096	96490525	1	3627										
LOR	4014	hgsc.bcm.edu	37	chr1	153233578	153233578	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0289855072463768	2	1	0.718138321009134	1.36446280991736	0.487308146399056	1	1	0	ggtagcagcggttctggctgCggctactccggcggcggtgg	19	11	1	0	rs1143389	bycluster;byfrequency;by1000genomes	TCGA-OR-A5JR-01A-11D-A29I-10	TCGA-OR-A5JR-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6625a9c0-ac73-4f14-a02d-7a8e64f7b2bb	8ea6498c-da66-42fc-bb2a-b4f5e02c0438	.	LOR-90	NM_000427	exon2	c.C153T	p.C51C	TGGCTGCGGCTAC	.	8	8	0	0	C|0.818;T|0.182	0	0	0	0	0	T	153233578	C	T	153233578	2	4	20	1	0	0	0	0	0	0	0	1	8924	776	27	1		1	LOR	1	153233578	Silent	SNP	C	TCGA-OR-A5JR-01A-11D-A29I-10	473482	153233578	96017043	2	3628										
TOR3A	64222	hgsc.bcm.edu	37	chr1	179051300	179051300	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0289855072463768	2	1	0.718138321009134	1.36446280991736	0.487308146399056	1	1	0	ggcgccagctttggctctttTtcctgctgctgctcccgggc	12	15	1	0	rs2296377	byfrequency	TCGA-OR-A5JR-01A-11D-A29I-10	TCGA-OR-A5JR-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6625a9c0-ac73-4f14-a02d-7a8e64f7b2bb	8ea6498c-da66-42fc-bb2a-b4f5e02c0438	.	TOR3A-90	NM_022371	exon1	c.T37C	p.F13L	CTCTTTTTCCTGC	.	9	9	0	0	T|0.229;C|0.771	2	0	2	0	0	C	179051300	T	C	179051300	3	2	20	1	0	0	0	0	1	0	0	0	16414	1841	64	4	39	4	TOR3A	1	179051300	Missense_Mutation	SNP	T	TCGA-OR-A5JR-01A-11D-A29I-10	25817722	179051300	70199321	3	3629										
OR2T33	391195	broad.mit.edu	37	chr1	248436537	248436537	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.0289855072463768	2	1	0.718138321009134	1.36446280991736	0.487308146399056	1	1	0	gcagatgtacatggcgttttCgaagactgaagtgtcagcac	12	8	1	3	novel		TCGA-OR-A5JR-01A-11D-A29I-10	TCGA-OR-A5JR-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6625a9c0-ac73-4f14-a02d-7a8e64f7b2bb	8ea6498c-da66-42fc-bb2a-b4f5e02c0438	.	OR2T33-114	NM_001004695	exon1	c.G580C	p.E194Q	CGTTTTCGAAGAC	.	666	19	609	0	.	1	1	0	0	0	G	248436537	C	G	248436537	3	3	20	1	0	0	0	0	1	0	0	0	11053	893	31	2	385	2	OR2T33	1	248436537	Missense_Mutation	SNP	C	TCGA-OR-A5JR-01A-11D-A29I-10	69385237	248436537	814084	4	3630										
CMPK2	129607	hgsc.bcm.edu	37	chr2	7005369	7005369	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0289855072463768	2	1	0.718138321009134	1.36446280991736	0.487308146399056	1	1	0	tgcgggcgtggtgcctcctgAcaggcgcccagcagctcgag	16	14	0	1	rs11678810		TCGA-OR-A5JR-01A-11D-A29I-10	TCGA-OR-A5JR-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6625a9c0-ac73-4f14-a02d-7a8e64f7b2bb	8ea6498c-da66-42fc-bb2a-b4f5e02c0438	.	CMPK2-68	NM_001256478	exon1	c.T459C	p.C153C	CTCCTGACAGGCG	.	7	7	0	0	A|0.003;G|0.997	0	0	0	0	0	G	7005369	A	G	7005369	2	3	20	1	0	0	0	0	0	0	0	1	3587	273	10	4		4	CMPK2	2	7005369	Silent	SNP	A	TCGA-OR-A5JR-01A-11D-A29I-10		7005369	236194004	5	3631										
TTN	7273	bcgsc.ca	37	chr2	179421694	179421694	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0289855072463768	2	1	0.718138321009134	1.36446280991736	0.487308146399056	1	1	0	tctgagtcaagccagagatgAtgaattgagtttcagtaaca	10	6	3	5	rs9808377	byfrequency	TCGA-OR-A5JR-01A-11D-A29I-10	TCGA-OR-A5JR-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6625a9c0-ac73-4f14-a02d-7a8e64f7b2bb	8ea6498c-da66-42fc-bb2a-b4f5e02c0438	.	TTN-636	NM_001267550	exon330	c.T88187C	p.I29396T	GAGATGATGAATT	.	119	5	108	1	A|0.549;G|0.451	0	0	0	0	0	G	179421694	A	G	179421694	3	3	20	1	0	0	0	0	1	0	0	0	16773	333	12	4	19924	4	TTN	2	179421694	Missense_Mutation	SNP	A	TCGA-OR-A5JR-01A-11D-A29I-10	172416325	179421694	63777679	6	3632										
PRR21	643905	bcgsc.ca	37	chr2	240982243	240982243	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0289855072463768	2	1	0.718138321009134	1.36446280991736	0.487308146399056	1	1	0	agggccgtgggtgaagagccGtggatgaagggccatgggtg	21	6	0	3	rs80033040	byfrequency	TCGA-OR-A5JR-01A-11D-A29I-10	TCGA-OR-A5JR-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6625a9c0-ac73-4f14-a02d-7a8e64f7b2bb	8ea6498c-da66-42fc-bb2a-b4f5e02c0438	.	PRR21-70	NM_001080835	exon1	c.C157T	p.R53W	AGAGCCGTGGATG	.	115	9	182	3	G|0.966;A|0.034	0	0	0	0	0	A	240982243	G	A	240982243	3	1	20	1	0	0	0	0	1	0	0	0	12624	1144	40	1	1015	1	PRR21	2	240982243	Missense_Mutation	SNP	G	TCGA-OR-A5JR-01A-11D-A29I-10	61560549	240982243	2217130	7	3633										
SEMA5B	54437	hgsc.bcm.edu	37	chr3	122631896	122631896	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0289855072463768	2	1	0.718138321009134	1.36446280991736	0.487308146399056	1	1	0	tgctcccgctgcgcaggaggAcctccaccagggctgcggag	15	15	0	0	rs2276782	byfrequency	TCGA-OR-A5JR-01A-11D-A29I-10	TCGA-OR-A5JR-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6625a9c0-ac73-4f14-a02d-7a8e64f7b2bb	8ea6498c-da66-42fc-bb2a-b4f5e02c0438	.	SEMA5B-157	NM_001256347	exon18	c.T2681A	p.V894D	AGGAGGACCTCCA	.	9	5	0	0	T|0.412;A|0.588	0	0	0	0	0	T	122631896	A	T	122631896	3	4	20	1	0	0	0	0	1	0	0	0	14073	275	10	5	960	5	SEMA5B	3	122631896	Missense_Mutation	SNP	A	TCGA-OR-A5JR-01A-11D-A29I-10		122631896	75390534	8	3634										
ADCY5	111	hgsc.bcm.edu	37	chr3	123167249	123167249	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0289855072463768	2	1	0.718138321009134	1.36446280991736	0.487308146399056	1	1	0	ttggtggagccgcgggcagaGcccccgggggcatgggggta	21	10	0	1	rs4678027		TCGA-OR-A5JR-01A-11D-A29I-10	TCGA-OR-A5JR-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6625a9c0-ac73-4f14-a02d-7a8e64f7b2bb	8ea6498c-da66-42fc-bb2a-b4f5e02c0438	.	ADCY5-94	NM_183357	exon1	c.C144T	p.G48G	GGCAGAGCCCCCG	.	4	4	0	0	G|0.028;A|0.972	0	0	0	0	0	A	123167249	G	A	123167249	2	1	20	1	0	0	0	0	0	0	0	1	297	958	34	3		3	ADCY5	3	123167249	Silent	SNP	G	TCGA-OR-A5JR-01A-11D-A29I-10	535353	123167249	74855181	9	3635										
MUC4	4585	hgsc.bcm.edu	37	chr3	195508147	195508194	+	In_Frame_Del	DEL	GTGGATGCTGAGGAAGTGCTGGTGACAGGAAGAGGGGTGGCGTGACCT	GTGGATGCTGAGGAAGTGCTGGTGACAGGAAGAGGGGTGGCGTGACCT	-													0.0289855072463768	2	1	0.718138321009134	1.36446280991736	0.487308146399056	1	1	0	gaacaggggtggcgtgaccgGtggatgctgaggaagtgctg					novel		TCGA-OR-A5JR-01A-11D-A29I-10	TCGA-OR-A5JR-10A-01D-A29L-10	GTGGATGCTGAGGAAGTGCTGGTGACAGGAAGAGGGGTGGCGTGACCT	GTGGATGCTGAGGAAGTGCTGGTGACAGGAAGAGGGGTGGCGTGACCT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6625a9c0-ac73-4f14-a02d-7a8e64f7b2bb	8ea6498c-da66-42fc-bb2a-b4f5e02c0438	.	MUC4-90	NM_018406	exon2	c.10257_10304del	p.3419_3435del	TGACCGGTGGATG	.	725	0	459	0	.	0	0	0	0	0	-	195508194	GTGGATGCTGAGGAAGTGCTGGTGACAGGAAGAGGGGTGGCGTGACCT	-	195508147	7	5	20	1	0	1	0	1	0	0	0	0	10006	1261	44	0		0	MUC4	3	195508147	In_Frame_Del	DEL	GTGGATGCTGAGGAAGTGCTGGTGACAGGAAGAGGGGTGGCGTGACCT	TCGA-OR-A5JR-01A-11D-A29I-10	72340898	195508147	2514283	10	3636										
TACC3	10460	ucsc.edu	37	chr4	1729795	1729795	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0289855072463768	2	1	0.718138321009134	1.36446280991736	0.487308146399056	1	1	0	actccgcacggagccgaggaAgaatgcaaagcggagactcc	13	12	0	2	rs200539908	byfrequency	TCGA-OR-A5JR-01A-11D-A29I-10	TCGA-OR-A5JR-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6625a9c0-ac73-4f14-a02d-7a8e64f7b2bb	8ea6498c-da66-42fc-bb2a-b4f5e02c0438	.	TACC3-91	NM_006342	exon4	c.A666G	p.E222E	CGAGGAAGAATGC	.	90	25	44	0	A|0.992;G|0.008	4	4	0	0	0	G	1729795	A	G	1729795	2	3	20	1	0	0	0	0	0	0	0	1	15540	69	3	4		4	TACC3	4	1729795	Silent	SNP	A	TCGA-OR-A5JR-01A-11D-A29I-10		1729795	189424481	11	3637										
CCDC96	257236	hgsc.bcm.edu	37	chr4	7044357	7044357	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0289855072463768	2	1	0.718138321009134	1.36446280991736	0.487308146399056	1	1	0	tgggcgggctcctcagccccAacctcggccggctcttcggg	14	17	2	0	rs871133		TCGA-OR-A5JR-01A-11D-A29I-10	TCGA-OR-A5JR-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6625a9c0-ac73-4f14-a02d-7a8e64f7b2bb	8ea6498c-da66-42fc-bb2a-b4f5e02c0438	.	CCDC96-90	NM_153376	exon1	c.T309C	p.V103V	AGCCCCAACCTCG	.	14	14	0	0	A|0.036;G|0.964	4	0	4	0	0	G	7044357	A	G	7044357	2	3	20	1	0	0	0	0	0	0	0	1	2880	117	5	4		4	CCDC96	4	7044357	Silent	SNP	A	TCGA-OR-A5JR-01A-11D-A29I-10	5314562	7044357	184109919	12	3638			1	15		2	2	24	N	C_A	5.126377e-05
CCDC96	257236	hgsc.bcm.edu	37	chr4	7044380	7044380	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0289855072463768	2	1	0.718138321009134	1.36446280991736	0.487308146399056	1	1	0	ctcggccggctcttcgggctCgggctggggctcggccggcc	18	16	1	0	rs871134		TCGA-OR-A5JR-01A-11D-A29I-10	TCGA-OR-A5JR-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6625a9c0-ac73-4f14-a02d-7a8e64f7b2bb	8ea6498c-da66-42fc-bb2a-b4f5e02c0438	.	CCDC96-90	NM_153376	exon1	c.G286A	p.E96K	CGGGCTCGGGCTG	.	7	7	0	0	C|0.472;T|0.528	2	0	2	0	0	T	7044380	C	T	7044380	3	4	20	1	0	0	0	0	1	0	0	0	2880	893	31	1	1385	1	CCDC96	4	7044380	Missense_Mutation	SNP	C	TCGA-OR-A5JR-01A-11D-A29I-10	23	7044380	184109896	13	3639			1	15		2	2	24	N	C_A	5.126377e-05
PDCD6	10016	hgsc.bcm.edu	37	chr5	271858	271869	+	In_Frame_Del	DEL	CCGGCCCTGGGG	CCGGCCCTGGGG	-													0.0289855072463768	2	1	0.718138321009134	1.36446280991736	0.487308146399056	1	1	0	ggccgcctactcttaccgccCcggccctggggccggccctg					novel		TCGA-OR-A5JR-01A-11D-A29I-10	TCGA-OR-A5JR-10A-01D-A29L-10	CCGGCCCTGGGG	CCGGCCCTGGGG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6625a9c0-ac73-4f14-a02d-7a8e64f7b2bb	8ea6498c-da66-42fc-bb2a-b4f5e02c0438	.	PDCD6-290	NM_013232	exon1	c.23_34del	p.8_12del	ACCGCCCCGGCCC	.	25	10	3	0	.	0	0	0	0	0	-	271869	CCGGCCCTGGGG	-	271858	7	5	20	1	0	1	0	1	0	0	0	0	11652	623	22	0	25	0	PDCD6	5	271858	In_Frame_Del	DEL	CCGGCCCTGGGG	TCGA-OR-A5JR-01A-11D-A29I-10		271858	180643402	14	3640										
NSUN2	54888	hgsc.bcm.edu	37	chr5	6633042	6633042	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0289855072463768	2	1	0.718138321009134	1.36446280991736	0.487308146399056	1	1	0	tcggcgccatcctccgcgtcCtccggccgctgctgttgctg	12	18	0	0	rs10062086	byfrequency	TCGA-OR-A5JR-01A-11D-A29I-10	TCGA-OR-A5JR-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6625a9c0-ac73-4f14-a02d-7a8e64f7b2bb	8ea6498c-da66-42fc-bb2a-b4f5e02c0438	.	NSUN2-91	NM_017755	exon1	c.G51A	p.E17E	CGCGTCCTCCGGC	.	4	4	1	0	C|0.687;T|0.313	9	4	5	0	0	T	6633042	C	T	6633042	2	4	20	1	0	0	0	0	0	0	0	1	10707	680	24	3		3	NSUN2	5	6633042	Silent	SNP	C	TCGA-OR-A5JR-01A-11D-A29I-10	6361184	6633042	174282218	15	3641										
C9	735	broad.mit.edu;bcgsc.ca	37	chr5	39341264	39341264	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0289855072463768	2	1	0.718138321009134	1.36446280991736	0.487308146399056	1	1	0	acacccatagcctgctgttcGtgccagctcagactcttcta	7	15	3	1	rs144138616		TCGA-OR-A5JR-01A-11D-A29I-10	TCGA-OR-A5JR-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6625a9c0-ac73-4f14-a02d-7a8e64f7b2bb	8ea6498c-da66-42fc-bb2a-b4f5e02c0438	.	C9-90	NM_001737	exon4	c.C460T	p.R154X	CTGTTCGTGCCAG	.	218	7	143	0	G|1.000;A|0.000	0	0	0	0	0	A	39341264	G	A	39341264	4	1	20	1	0	0	0	0	0	1	0	0	2449	1153	40	1	1251	1	C9	5	39341264	Nonsense_Mutation	SNP	G	TCGA-OR-A5JR-01A-11D-A29I-10	32708222	39341264	141573996	16	3642										
RUNX2	860	hgsc.bcm.edu	37	chr6	45390514	45390514	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0289855072463768	2	1	0.718138321009134	1.36446280991736	0.487308146399056	1	1	0	gcggcggctgcggcggcggcGgcggctgcggcggcggcagc	24	14	0	0	novel		TCGA-OR-A5JR-01A-11D-A29I-10	TCGA-OR-A5JR-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6625a9c0-ac73-4f14-a02d-7a8e64f7b2bb	8ea6498c-da66-42fc-bb2a-b4f5e02c0438	.	RUNX2-417	NM_001024630	exon3	c.G243A	p.A81A	GGCGGCGGCGGCT	.	6	4	2	0	.	0	0	0	0	0	A	45390514	G	A	45390514	2	1	20	1	0	0	0	0	0	0	0	1	13783	1103	39	1		1	RUNX2	6	45390514	Silent	SNP	G	TCGA-OR-A5JR-01A-11D-A29I-10		45390514	125724553	17	3643										
POU3F2	5454	hgsc.bcm.edu	37	chr6	99283376	99283376	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0289855072463768	2	1	0.718138321009134	1.36446280991736	0.487308146399056	1	1	0	gccggcgggcagccggccggTctgcaccaccacggcctgcg	16	18	1	0	rs195860		TCGA-OR-A5JR-01A-11D-A29I-10	TCGA-OR-A5JR-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6625a9c0-ac73-4f14-a02d-7a8e64f7b2bb	8ea6498c-da66-42fc-bb2a-b4f5e02c0438	.	POU3F2-90	NM_005604	exon1	c.T627G	p.G209G	GGCCGGTCTGCAC	.	12	12	0	0	T|0.089;G|0.911	0	0	0	0	0	G	99283376	T	G	99283376	2	3	20	1	0	0	0	0	0	0	0	1	12304	1654	58	5		5	POU3F2	6	99283376	Silent	SNP	T	TCGA-OR-A5JR-01A-11D-A29I-10	53892862	99283376	71831691	18	3644										
TTLL2	83887	bcgsc.ca	37	chr6	167753691	167753691	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0289855072463768	2	1	0.718138321009134	1.36446280991736	0.487308146399056	1	1	0	accccggctgtggtgcaaagCgtcctcctggagagggggtg	17	11	0	1	rs877653	byfrequency	TCGA-OR-A5JR-01A-11D-A29I-10	TCGA-OR-A5JR-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6625a9c0-ac73-4f14-a02d-7a8e64f7b2bb	8ea6498c-da66-42fc-bb2a-b4f5e02c0438	.	TTLL2-92	NM_031949	exon3	c.C303T	p.S101S	GCAAAGCGTCCTC	.	125	6	162	1	C|0.724;T|0.276	0	0	0	0	0	T	167753691	C	T	167753691	2	4	20	1	0	0	0	0	0	0	0	1	16765	767	27	1		1	TTLL2	6	167753691	Silent	SNP	C	TCGA-OR-A5JR-01A-11D-A29I-10	68470315	167753691	3361376	19	3645										
SMOC2	64094	hgsc.bcm.edu	37	chr6	168842113	168842113	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0289855072463768	2	1	0.718138321009134	1.36446280991736	0.487308146399056	1	1	0	ctgctcccgccggtgcccgcTcagaagttctcggcgctcac	11	18	3	1	rs73270928	byfrequency	TCGA-OR-A5JR-01A-11D-A29I-10	TCGA-OR-A5JR-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6625a9c0-ac73-4f14-a02d-7a8e64f7b2bb	8ea6498c-da66-42fc-bb2a-b4f5e02c0438	.	SMOC2-91	NM_022138	exon1	c.T63G	p.A21A	GCCCGCTCAGAAG	.	31	25	9	0	T|0.654;G|0.346	0	0	0	0	0	G	168842113	T	G	168842113	2	3	20	1	0	0	0	0	0	0	0	1	14837	1538	54	5		5	SMOC2	6	168842113	Silent	SNP	T	TCGA-OR-A5JR-01A-11D-A29I-10	1088422	168842113	2272954	20	3646										
TNRC18	84629	hgsc.bcm.edu	37	chr7	5352635	5352635	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0289855072463768	2	1	0.718138321009134	1.36446280991736	0.487308146399056	1	1	0	gaggaggaggaagaggaggaTgaggaggaggaggaggagga	25	0	0	2	novel		TCGA-OR-A5JR-01A-11D-A29I-10	TCGA-OR-A5JR-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6625a9c0-ac73-4f14-a02d-7a8e64f7b2bb	8ea6498c-da66-42fc-bb2a-b4f5e02c0438	.	TNRC18-46	NM_001080495	exon27	c.A7887C	p.S2629S	GGAGGATGAGGAG	.	24	9	5	0	.	2	1	1	0	0	G	5352635	T	G	5352635	2	3	20	1	0	0	0	0	0	0	0	1	16376	1451	51	5		5	TNRC18	7	5352635	Silent	SNP	T	TCGA-OR-A5JR-01A-11D-A29I-10		5352635	153786028	21	3647										
USP42	84132	hgsc.bcm.edu	37	chr7	6193521	6193521	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0289855072463768	2	1	0.718138321009134	1.36446280991736	0.487308146399056	1	1	0	caagaaggctccgccgccccGcgatcccggcacccccgcta	10	21	0	1	rs61729726	byfrequency	TCGA-OR-A5JR-01A-11D-A29I-10	TCGA-OR-A5JR-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6625a9c0-ac73-4f14-a02d-7a8e64f7b2bb	8ea6498c-da66-42fc-bb2a-b4f5e02c0438	.	USP42-659	NM_032172	exon15	c.G2336C	p.R779P	CGCCCCGCGATCC	.	11	5	1	0	G|0.456;C|0.544	4	4	0	0	0	C	6193521	G	C	6193521	3	2	20	1	0	0	0	0	1	0	0	0	17111	1087	38	2		2	USP42	7	6193521	Missense_Mutation	SNP	G	TCGA-OR-A5JR-01A-11D-A29I-10	840886	6193521	152945142	22	3648										
EPPK1	83481	bcgsc.ca	37	chr8	144940267	144940267	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0289855072463768	2	1	0.718138321009134	1.36446280991736	0.487308146399056	1	1	0	tgcgtgttggggtcgaagaaGcccttggtgtcgtcgctggg	18	8	0	1	rs28441354		TCGA-OR-A5JR-01A-11D-A29I-10	TCGA-OR-A5JR-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6625a9c0-ac73-4f14-a02d-7a8e64f7b2bb	8ea6498c-da66-42fc-bb2a-b4f5e02c0438	.	EPPK1-25	NM_031308	exon1	c.C7155T	p.G2385G	GAAGAAGCCCTTG	.	322	14	123	1	G|0.995;A|0.005	1	1	0	0	0	A	144940267	G	A	144940267	2	1	20	1	0	0	0	0	0	0	0	1	5203	958	34	3		3	EPPK1	8	144940267	Silent	SNP	G	TCGA-OR-A5JR-01A-11D-A29I-10		144940267	1423755	23	3649										
PLEC	5339	hgsc.bcm.edu	37	chr8	144990528	144990528	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0289855072463768	2	1	0.718138321009134	1.36446280991736	0.487308146399056	1	1	0	cgcgagccggtgcgggagccAgcggtagagccggagccgct	19	13	0	1	rs7014582	byfrequency	TCGA-OR-A5JR-01A-11D-A29I-10	TCGA-OR-A5JR-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6625a9c0-ac73-4f14-a02d-7a8e64f7b2bb	8ea6498c-da66-42fc-bb2a-b4f5e02c0438	.	PLEC-141	NM_201380	exon32	c.T13872C	p.A4624A	GGAGCCAGCGGTA	.	22	10	5	0	A|0.536;G|0.464	65	34	31	0	0	G	144990528	A	G	144990528	2	3	20	1	0	0	0	0	0	0	0	1	12081	175	7	4		4	PLEC	8	144990528	Silent	SNP	A	TCGA-OR-A5JR-01A-11D-A29I-10	50261	144990528	1373494	24	3650										
C9orf66	157983	hgsc.bcm.edu	37	chr9	214706	214706	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0289855072463768	2	1	0.718138321009134	1.36446280991736	0.487308146399056	1	1	0	gcgccgtctgccccagtatcGggaggccagttccgcgctgg	15	15	1	0	rs540473	byfrequency	TCGA-OR-A5JR-01A-11D-A29I-10	TCGA-OR-A5JR-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6625a9c0-ac73-4f14-a02d-7a8e64f7b2bb	8ea6498c-da66-42fc-bb2a-b4f5e02c0438	.	C9orf66-514	NM_152569	exon1	c.C691G	p.R231G	AGTATCGGGAGGC	.	5	5	1	0	G|0.516;C|0.484	0	0	0	0	0	C	214706	G	C	214706	3	2	20	1	0	0	0	0	1	0	0	0	2496	1124	39	2	200	2	C9orf66	9	214706	Missense_Mutation	SNP	G	TCGA-OR-A5JR-01A-11D-A29I-10		214706	140998725	25	3651										
ZNF618	114991	bcgsc.ca	37	chr9	116810204	116810204	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0289855072463768	2	1	0.718138321009134	1.36446280991736	0.487308146399056	1	1	0	aacaacattgcctccaaccaGtcccgatcgccacctgctgt	6	17	0	0	rs12378906	byfrequency	TCGA-OR-A5JR-01A-11D-A29I-10	TCGA-OR-A5JR-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6625a9c0-ac73-4f14-a02d-7a8e64f7b2bb	8ea6498c-da66-42fc-bb2a-b4f5e02c0438	.	ZNF618-22	NM_133374	exon13	c.G999A	p.Q333Q	CAACCAGTCCCGA	.	314	9	305	2	G|0.927;A|0.073	8	8	0	0	0	A	116810204	G	A	116810204	2	1	20	1	0	0	0	0	0	0	0	1	18079	1020	36	3		3	ZNF618	9	116810204	Silent	SNP	G	TCGA-OR-A5JR-01A-11D-A29I-10	116595498	116810204	24403227	26	3652										
FPGS	2356	hgsc.bcm.edu	37	chr9	130565267	130565267	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0289855072463768	2	1	0.718138321009134	1.36446280991736	0.487308146399056	1	1	0	cagcggcgtctgcgcgcggcAtaacgacccaggtcgcggcg	16	15	1	0	rs10760502	byfrequency	TCGA-OR-A5JR-01A-11D-A29I-10	TCGA-OR-A5JR-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6625a9c0-ac73-4f14-a02d-7a8e64f7b2bb	8ea6498c-da66-42fc-bb2a-b4f5e02c0438	.	FPGS-90	NM_004957	exon1	c.A64G	p.I22V	CGCGGCATAACGA	.	6	6	0	0	A|0.235;G|0.765	1	0	1	0	0	G	130565267	A	G	130565267	3	3	20	1	0	0	0	0	1	0	0	0	6055	217	8	4	66	4	FPGS	9	130565267	Missense_Mutation	SNP	A	TCGA-OR-A5JR-01A-11D-A29I-10	13755063	130565267	10648164	27	3653										
MUC2	4583	broad.mit.edu	37	chr11	1092953	1092953	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0289855072463768	2	1	0.718138321009134	1.36446280991736	0.487308146399056	1	1	0	acccatcaccaccaccactaCggtgaccccaaccccaacac	3	22	1	1	novel		TCGA-OR-A5JR-01A-11D-A29I-10	TCGA-OR-A5JR-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6625a9c0-ac73-4f14-a02d-7a8e64f7b2bb	8ea6498c-da66-42fc-bb2a-b4f5e02c0438	.	MUC2-90	NM_002457	exon30	c.C4772T	p.T1591M	CCACTACGGTGAC	.	136	9	112	1	.	0	0	0	0	0	T	1092953	C	T	1092953	3	4	20	1	0	0	0	0	1	0	0	0	10003	536	19	1	4890	1	MUC2	11	1092953	Missense_Mutation	SNP	C	TCGA-OR-A5JR-01A-11D-A29I-10		1092953	133913563	28	3654										
OR51F1	256892	bcgsc.ca	37	chr11	4790671	4790671	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0289855072463768	2	1	0.718138321009134	1.36446280991736	0.487308146399056	1	1	0	ttaaggagcaaaagtagtggCaatattagtactatagcacg	10	5	0	0	rs11033795	byfrequency	TCGA-OR-A5JR-01A-11D-A29I-10	TCGA-OR-A5JR-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6625a9c0-ac73-4f14-a02d-7a8e64f7b2bb	8ea6498c-da66-42fc-bb2a-b4f5e02c0438	.	OR51F1-70	NM_001004752	exon1	c.G477A	p.L159L	TAGTGGCAATATT	.	144	6	155	1	C|0.706;T|0.294	0	0	0	0	0	T	4790671	C	T	4790671	2	4	20	1	0	0	0	0	0	0	0	1	11125	709	25	3		3	OR51F1	11	4790671	Silent	SNP	C	TCGA-OR-A5JR-01A-11D-A29I-10	3697718	4790671	130215845	29	3655										
ZDHHC13	54503	broad.mit.edu	37	chr11	19185906	19185906	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0289855072463768	2	1	0.718138321009134	1.36446280991736	0.487308146399056	1	1	0	cagaacattttgtacatcatGtcttgtgagttttttcatat	6	6	3	2	novel		TCGA-OR-A5JR-01A-11D-A29I-10	TCGA-OR-A5JR-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6625a9c0-ac73-4f14-a02d-7a8e64f7b2bb	8ea6498c-da66-42fc-bb2a-b4f5e02c0438	.	ZDHHC13-90	NM_019028	exon12	c.G1292T	p.C431F	CATCATGTCTTGT	.	65	3	78	0	.	0	0	0	0	0	T	19185906	G	T	19185906	3	4	20	1	0	0	0	0	1	0	0	0	17640	1377	48	3	1338	3	ZDHHC13	11	19185906	Missense_Mutation	SNP	G	TCGA-OR-A5JR-01A-11D-A29I-10	14395235	19185906	115820610	30	3656										
CCDC34	91057	bcgsc.ca	37	chr11	27362359	27362359	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0289855072463768	2	1	0.718138321009134	1.36446280991736	0.487308146399056	1	1	0	tttcctttttctcctgtattTcagcttgctgttgtttttct	5	9	3	0	rs17244028	byfrequency	TCGA-OR-A5JR-01A-11D-A29I-10	TCGA-OR-A5JR-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6625a9c0-ac73-4f14-a02d-7a8e64f7b2bb	8ea6498c-da66-42fc-bb2a-b4f5e02c0438	.	CCDC34-90	NM_030771	exon5	c.A791C	p.E264A	TGTATTTCAGCTT	.	64	5	60	0	T|0.772;G|0.228	15	15	0	0	0	G	27362359	T	G	27362359	3	3	20	1	0	0	0	0	1	0	0	0	2813	1783	62	5	338	5	CCDC34	11	27362359	Missense_Mutation	SNP	T	TCGA-OR-A5JR-01A-11D-A29I-10	8176453	27362359	107644157	31	3657										
WT1	7490	hgsc.bcm.edu	37	chr11	32456694	32456694	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0289855072463768	2	1	0.718138321009134	1.36446280991736	0.487308146399056	1	1	0	acgtcggagcccatttgctgCggctcagacccggacgcccc	12	17	1	1	rs2234582	byfrequency	TCGA-OR-A5JR-01A-11D-A29I-10	TCGA-OR-A5JR-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6625a9c0-ac73-4f14-a02d-7a8e64f7b2bb	8ea6498c-da66-42fc-bb2a-b4f5e02c0438	.	WT1-6891	NM_024424	exon1	c.G198T	p.P66P	TTGCTGCGGCTCA	.	5	4	0	0	C|0.748;A|0.252	0	0	0	0	0	A	32456694	C	A	32456694	2	1	20	1	0	0	0	0	0	0	0	1	17446	755	27	2		2	WT1	11	32456694	Silent	SNP	C	TCGA-OR-A5JR-01A-11D-A29I-10	5094335	32456694	102549822	32	3658										
OR4A16	81327	ucsc.edu;bcgsc.ca	37	chr11	55111584	55111584	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0289855072463768	2	1	0.718138321009134	1.36446280991736	0.487308146399056	1	1	0	gaaaaatctctggtgtgaaaAgttaagtatagttagaaaaa	9	2	1	2	rs10896659	byfrequency	TCGA-OR-A5JR-01A-11D-A29I-10	TCGA-OR-A5JR-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6625a9c0-ac73-4f14-a02d-7a8e64f7b2bb	8ea6498c-da66-42fc-bb2a-b4f5e02c0438	.	OR4A16-69	NM_001005274	exon1	c.A908T	p.K303M	GTGAAAAGTTAAG	.	19	18	13	0	A|0.589;T|0.411	0	0	0	0	0	T	55111584	A	T	55111584	3	4	20	1	0	0	0	0	1	0	0	0	11070	72	3	5	910	5	OR4A16	11	55111584	Missense_Mutation	SNP	A	TCGA-OR-A5JR-01A-11D-A29I-10	22654890	55111584	79894932	33	3659										
NUMA1	4926	bcgsc.ca	37	chr11	71717106	71717106	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0289855072463768	2	1	0.718138321009134	1.36446280991736	0.487308146399056	1	1	0	ggggccccactggacaccccGgcctgggaacgacgagcaga	15	15	0	1	rs61745941	byfrequency	TCGA-OR-A5JR-01A-11D-A29I-10	TCGA-OR-A5JR-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6625a9c0-ac73-4f14-a02d-7a8e64f7b2bb	8ea6498c-da66-42fc-bb2a-b4f5e02c0438	.	NUMA1-633	NM_006185	exon22	c.C5667T	p.A1889A	CACCCCGGCCTGG	.	94	6	82	1	G|0.969;A|0.031	80	80	0	0	0	A	71717106	G	A	71717106	2	1	20	1	0	0	0	0	0	0	0	1	10779	1103	39	1		1	NUMA1	11	71717106	Silent	SNP	G	TCGA-OR-A5JR-01A-11D-A29I-10	16605522	71717106	63289410	34	3660										
PGM2L1	283209	bcgsc.ca	37	chr11	74109166	74109166	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0289855072463768	2	1	0.718138321009134	1.36446280991736	0.487308146399056	1	1	0	cggtgtggtagggggcgtggAgcaggttggagttcagatcc	20	6	1	1	rs12049823	byfrequency	TCGA-OR-A5JR-01A-11D-A29I-10	TCGA-OR-A5JR-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6625a9c0-ac73-4f14-a02d-7a8e64f7b2bb	8ea6498c-da66-42fc-bb2a-b4f5e02c0438	.	PGM2L1-91	NM_173582	exon1	c.T41C	p.L14P	GCGTGGAGCAGGT	.	84	5	66	1	A|0.843;G|0.157	1	1	0	0	0	G	74109166	A	G	74109166	3	3	20	1	0	0	0	0	1	0	0	0	11828	304	11	4	1883	4	PGM2L1	11	74109166	Missense_Mutation	SNP	A	TCGA-OR-A5JR-01A-11D-A29I-10	2392060	74109166	60897350	35	3661										
AKAP3	10566	bcgsc.ca	37	chr12	4737042	4737042	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0289855072463768	2	1	0.718138321009134	1.36446280991736	0.487308146399056	1	1	0	atgagggtccctgtgacgctGtggagattcctcaagaagga	14	8	1	4	rs7972737	byfrequency	TCGA-OR-A5JR-01A-11D-A29I-10	TCGA-OR-A5JR-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6625a9c0-ac73-4f14-a02d-7a8e64f7b2bb	8ea6498c-da66-42fc-bb2a-b4f5e02c0438	.	AKAP3-292	NM_006422	exon4	c.C1026T	p.H342H	GACGCTGTGGAGA	.	228	8	142	1	G|0.653;A|0.347	2	2	0	0	0	A	4737042	G	A	4737042	2	1	20	1	0	0	0	0	0	0	0	1	452	1368	48	3		3	AKAP3	12	4737042	Silent	SNP	G	TCGA-OR-A5JR-01A-11D-A29I-10		4737042	129114853	36	3662										
NAP1L1	4673	broad.mit.edu	37	chr12	76444319	76444319	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0289855072463768	2	1	0.718138321009134	1.36446280991736	0.487308146399056	1	1	0	aaattcgcttacatcatcatCatcatcttcaatagcttctc	2	12	7	0	novel		TCGA-OR-A5JR-01A-11D-A29I-10	TCGA-OR-A5JR-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6625a9c0-ac73-4f14-a02d-7a8e64f7b2bb	8ea6498c-da66-42fc-bb2a-b4f5e02c0438	.	NAP1L1-92	NM_004537	exon12	c.G1051A	p.D351N	CATCATCATCATC	.	144	4	120	0	.	0	0	0	0	0	T	76444319	C	T	76444319	3	4	20	1	0	0	0	0	1	0	0	0	10184	826	29	3	140	3	NAP1L1	12	76444319	Missense_Mutation	SNP	C	TCGA-OR-A5JR-01A-11D-A29I-10	71707277	76444319	57407576	37	3663										
TMEM119	338773	hgsc.bcm.edu	37	chr12	108986112	108986112	+	Silent	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.0289855072463768	2	1	0.718138321009134	1.36446280991736	0.487308146399056	1	1	0	gtagcaggcacagaccccagGagcagcaacagaaggatgag	14	10	0	3	rs10861953	byfrequency	TCGA-OR-A5JR-01A-11D-A29I-10	TCGA-OR-A5JR-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6625a9c0-ac73-4f14-a02d-7a8e64f7b2bb	8ea6498c-da66-42fc-bb2a-b4f5e02c0438	.	TMEM119-69	NM_181724	exon2	c.C48G	p.L16L	CCCCAGGAGCAGC	.	9	6	1	0	G|0.822;C|0.178	2	0	2	0	0	C	108986112	G	C	108986112	2	2	20	1	0	0	0	0	0	0	0	1	16069	1161	41	3		3	TMEM119	12	108986112	Silent	SNP	G	TCGA-OR-A5JR-01A-11D-A29I-10	32541793	108986112	24865783	38	3664										
FAM179B	23116	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr14	45542716	45542716	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0289855072463768	2	1	0.718138321009134	1.36446280991736	0.487308146399056	1	1	0	tctcaaccaccacatatcaaAaagagtttggaggaattact	6	9	2	1	novel		TCGA-OR-A5JR-01A-11D-A29I-10	TCGA-OR-A5JR-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6625a9c0-ac73-4f14-a02d-7a8e64f7b2bb	8ea6498c-da66-42fc-bb2a-b4f5e02c0438	.	FAM179B-93	NM_015091	exon19	c.A5115G	p.K1705K	TATCAAAAAGAGT	.	76	28	80	0	.	8	1	7	0	0	G	45542716	A	G	45542716	2	3	20	1	0	0	0	0	0	0	0	1	5522	11	1	4		4	FAM179B	14	45542716	Silent	SNP	A	TCGA-OR-A5JR-01A-11D-A29I-10		45542716	61806824	39	3665										
FERMT2	10979	bcgsc.ca	37	chr14	53341962	53341962	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0289855072463768	2	1	0.718138321009134	1.36446280991736	0.487308146399056	1	1	0	aaaattgttgacgttttaccCccttccagagtaatctccag	6	11	1	2	rs1130597	byfrequency	TCGA-OR-A5JR-01A-11D-A29I-10	TCGA-OR-A5JR-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6625a9c0-ac73-4f14-a02d-7a8e64f7b2bb	8ea6498c-da66-42fc-bb2a-b4f5e02c0438	.	FERMT2-68	NM_001135000	exon8	c.G1077C	p.G359G	TTTACCCCCTTCC	.	64	4	109	0	G|0.274;C|0.726	11	11	0	0	0	G	53341962	C	G	53341962	2	3	20	1	0	0	0	0	0	0	0	1	5837	610	22	3		3	FERMT2	14	53341962	Silent	SNP	C	TCGA-OR-A5JR-01A-11D-A29I-10	7799246	53341962	54007578	40	3666										
FAM161B	145483	bcgsc.ca	37	chr14	74413129	74413129	+	Silent	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.0289855072463768	2	1	0.718138321009134	1.36446280991736	0.487308146399056	1	1	0	gactccaacagacaccatctCcctttctgcttcagttcctg	5	16	3	1	rs7146634	byfrequency	TCGA-OR-A5JR-01A-11D-A29I-10	TCGA-OR-A5JR-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6625a9c0-ac73-4f14-a02d-7a8e64f7b2bb	8ea6498c-da66-42fc-bb2a-b4f5e02c0438	.	FAM161B-91	NM_152445	exon2	c.G423C	p.G141G	CCATCTCCCTTTC	.	111	5	112	1	C|0.648;G|0.352	2	2	0	0	0	G	74413129	C	G	74413129	2	3	20	1	0	0	0	0	0	0	0	1	5489	842	30	3		3	FAM161B	14	74413129	Silent	SNP	C	TCGA-OR-A5JR-01A-11D-A29I-10	21071167	74413129	32936411	41	3667										
ISM2	145501	hgsc.bcm.edu	37	chr14	77965094	77965094	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0289855072463768	2	1	0.718138321009134	1.36446280991736	0.487308146399056	1	1	0	cagcagcgccgccagcagcaGcacgcagaggaggagcccgg	16	15	0	1	rs12431905	byfrequency	TCGA-OR-A5JR-01A-11D-A29I-10	TCGA-OR-A5JR-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6625a9c0-ac73-4f14-a02d-7a8e64f7b2bb	8ea6498c-da66-42fc-bb2a-b4f5e02c0438	.	ISM2-91	NM_199296	exon1	c.C43T	p.L15L	GCAGCAGCACGCA	.	5	5	2	0	G|0.934;A|0.066	0	0	0	0	0	A	77965094	G	A	77965094	2	1	20	1	0	0	0	0	0	0	0	1	7882	962	34	3		3	ISM2	14	77965094	Silent	SNP	G	TCGA-OR-A5JR-01A-11D-A29I-10	3551965	77965094	29384446	42	3668										
SERPINA1	5265	bcgsc.ca	37	chr14	94847415	94847415	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0289855072463768	2	1	0.718138321009134	1.36446280991736	0.487308146399056	1	1	0	taggcaccttcacggtggtcAcctggtccacgtggaagtcc	12	13	2	0	rs6647	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-OR-A5JR-01A-11D-A29I-10	TCGA-OR-A5JR-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6625a9c0-ac73-4f14-a02d-7a8e64f7b2bb	8ea6498c-da66-42fc-bb2a-b4f5e02c0438	.	SERPINA1-226	NM_001127701	exon5	c.T710C	p.V237A	GTGGTCACCTGGT	.	143	5	167	2	A|0.718;G|0.282	22	22	0	0	0	G	94847415	A	G	94847415	3	3	20	1	0	0	0	0	1	0	0	0	14121	159	6	4	558	4	SERPINA1	14	94847415	Missense_Mutation	SNP	A	TCGA-OR-A5JR-01A-11D-A29I-10	16882321	94847415	12502125	43	3669										
TDRD9	122402	broad.mit.edu;bcgsc.ca	37	chr14	104394850	104394850	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0289855072463768	2	1	0.718138321009134	1.36446280991736	0.487308146399056	1	1	0	acgcctgggccttgaggatgCtgcggaagctcaccatcgag	14	12	1	1	rs9324066	byfrequency	TCGA-OR-A5JR-01A-11D-A29I-10	TCGA-OR-A5JR-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6625a9c0-ac73-4f14-a02d-7a8e64f7b2bb	8ea6498c-da66-42fc-bb2a-b4f5e02c0438	.	TDRD9-70	NM_153046	exon1	c.C4T	p.L2L	AGGATGCTGCGGA	.	113	8	55	0	A|0.000;C|0.519;G|0.000;T|0.480	0	0	0	0	0	T	104394850	C	T	104394850	2	4	20	1	0	0	0	0	0	0	0	1	15773	796	28	3		3	TDRD9	14	104394850	Silent	SNP	C	TCGA-OR-A5JR-01A-11D-A29I-10	9547435	104394850	2954690	44	3670										
ZNF592	9640	bcgsc.ca	37	chr15	85333953	85333953	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0289855072463768	2	1	0.718138321009134	1.36446280991736	0.487308146399056	1	1	0	tagacctgccaggtatgccaAatgctgctgcccaaccagtg	10	13	0	1	rs2241645	byfrequency	TCGA-OR-A5JR-01A-11D-A29I-10	TCGA-OR-A5JR-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6625a9c0-ac73-4f14-a02d-7a8e64f7b2bb	8ea6498c-da66-42fc-bb2a-b4f5e02c0438	.	ZNF592-96	NM_014630	exon5	c.A2238G	p.Q746Q	ATGCCAAATGCTG	.	79	4	101	1	A|0.223;G|0.777	8	8	0	0	0	G	85333953	A	G	85333953	2	3	20	1	0	0	0	0	0	0	0	1	18059	11	1	4		4	ZNF592	15	85333953	Silent	SNP	A	TCGA-OR-A5JR-01A-11D-A29I-10		85333953	17197439	45	3671										
HDDC3	374659	hgsc.bcm.edu	37	chr15	91475756	91475756	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0289855072463768	2	1	0.718138321009134	1.36446280991736	0.487308146399056	1	1	0	gcagcctccagcagctgcgcCgcctcagagcccatcgcgcg	12	19	1	1	novel		TCGA-OR-A5JR-01A-11D-A29I-10	TCGA-OR-A5JR-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6625a9c0-ac73-4f14-a02d-7a8e64f7b2bb	8ea6498c-da66-42fc-bb2a-b4f5e02c0438	.	HDDC3-91	NM_198527	exon1	c.G15C	p.A5A	CTGCGCCGCCTCA	.	8	7	0	0	.	16	0	16	0	0	G	91475756	C	G	91475756	2	3	20	1	0	0	0	0	0	0	0	1	7038	639	23	2		2	HDDC3	15	91475756	Silent	SNP	C	TCGA-OR-A5JR-01A-11D-A29I-10	6141803	91475756	11055636	46	3672										
RCCD1	91433	hgsc.bcm.edu	37	chr15	91499986	91499986	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0289855072463768	2	1	0.718138321009134	1.36446280991736	0.487308146399056	1	1	0	tggcggaggagcggccggggGcctggttcggcttcggtttc	20	10	0	0	rs4932380		TCGA-OR-A5JR-01A-11D-A29I-10	TCGA-OR-A5JR-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6625a9c0-ac73-4f14-a02d-7a8e64f7b2bb	8ea6498c-da66-42fc-bb2a-b4f5e02c0438	.	RCCD1-90	NM_001017919	exon2	c.G22T	p.A8S	CCGGGGGCCTGGT	.	12	12	3	0	G|0.822;T|0.178	1	0	1	0	0	T	91499986	G	T	91499986	3	4	20	1	0	0	0	0	1	0	0	0	13210	1203	42	3	24	3	RCCD1	15	91499986	Missense_Mutation	SNP	G	TCGA-OR-A5JR-01A-11D-A29I-10	24230	91499986	11031406	47	3673										
FAM173A	65990	hgsc.bcm.edu	37	chr16	771286	771286	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0289855072463768	2	1	0.718138321009134	1.36446280991736	0.487308146399056	1	1	0	cccgcagccatggagcaggaCgacccggtcgaggcgctgac	15	15	0	1	rs11540049	byfrequency	TCGA-OR-A5JR-01A-11D-A29I-10	TCGA-OR-A5JR-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6625a9c0-ac73-4f14-a02d-7a8e64f7b2bb	8ea6498c-da66-42fc-bb2a-b4f5e02c0438	.	FAM173A-91	NM_001271285	exon1	c.C12T	p.D4D	GCAGGACGACCCG	.	4	4	0	0	C|0.504;T|0.496	3	1	2	0	0	T	771286	C	T	771286	2	4	20	1	0	0	0	0	0	0	0	1	5509	535	19	1		1	FAM173A	16	771286	Silent	SNP	C	TCGA-OR-A5JR-01A-11D-A29I-10		771286	89583467	48	3674										
EME2	197342	hgsc.bcm.edu	37	chr16	1823444	1823444	+	Silent	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.0289855072463768	2	1	0.718138321009134	1.36446280991736	0.487308146399056	1	1	0	ctgctgcggccggagcaggtCctgaagcgcctcgcggtgtg	17	13	0	1	rs761065		TCGA-OR-A5JR-01A-11D-A29I-10	TCGA-OR-A5JR-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6625a9c0-ac73-4f14-a02d-7a8e64f7b2bb	8ea6498c-da66-42fc-bb2a-b4f5e02c0438	.	EME2-229	NM_001257370	exon1	c.C216G	p.V72V	GCAGGTCCTGAAG	.	9	9	1	0	C|0.615;G|0.385	1	0	1	0	0	G	1823444	C	G	1823444	2	3	20	1	0	0	0	0	0	0	0	1	5102	842	30	3		3	EME2	16	1823444	Silent	SNP	C	TCGA-OR-A5JR-01A-11D-A29I-10	1052158	1823444	88531309	49	3675										
ITGAM	3684	broad.mit.edu	37	chr16	31342579	31342579	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0289855072463768	2	1	0.718138321009134	1.36446280991736	0.487308146399056	1	1	0	tgctgctcctggccctcatcAccgccgcgctgtacaaggtg	11	16	2	0	novel		TCGA-OR-A5JR-01A-11D-A29I-10	TCGA-OR-A5JR-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6625a9c0-ac73-4f14-a02d-7a8e64f7b2bb	8ea6498c-da66-42fc-bb2a-b4f5e02c0438	.	ITGAM-226	NM_001145808	exon29	c.A3373C	p.T1125P	CTCATCACCGCCG	.	110	19	66	15	.	9	9	0	0	0	C	31342579	A	C	31342579	3	2	20	1	0	0	0	0	1	0	0	0	7908	159	6	5	3487	5	ITGAM	16	31342579	Missense_Mutation	SNP	A	TCGA-OR-A5JR-01A-11D-A29I-10	29519135	31342579	59012174	50	3676										
CBLN1	869	broad.mit.edu	37	chr16	49315298	49315298	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0289855072463768	2	1	0.718138321009134	1.36446280991736	0.487308146399056	1	1	0	cttgccctccagcacgatggGctccgtctcattctgcccgc	9	18	2	0	rs200550358		TCGA-OR-A5JR-01A-11D-A29I-10	TCGA-OR-A5JR-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6625a9c0-ac73-4f14-a02d-7a8e64f7b2bb	8ea6498c-da66-42fc-bb2a-b4f5e02c0438	.	CBLN1-90	NM_004352	exon1	c.C79A	p.P27T	CGATGGGCTCCGT	.	86	8	27	2	.	6	6	0	0	0	T	49315298	G	T	49315298	3	4	20	1	0	0	0	0	1	0	0	0	2710	1203	42	3	514	3	CBLN1	16	49315298	Missense_Mutation	SNP	G	TCGA-OR-A5JR-01A-11D-A29I-10	17972719	49315298	41039455	51	3677										
RBL2	5934	hgsc.bcm.edu	37	chr16	53468699	53468699	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0289855072463768	2	1	0.718138321009134	1.36446280991736	0.487308146399056	1	1	0	cgcagcatgagcgaaagctaCacgctggaggtgcgctcgcg	15	12	0	1	novel		TCGA-OR-A5JR-01A-11D-A29I-10	TCGA-OR-A5JR-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6625a9c0-ac73-4f14-a02d-7a8e64f7b2bb	8ea6498c-da66-42fc-bb2a-b4f5e02c0438	.	RBL2-841	NM_005611	exon1	c.C231T	p.Y77Y	AAGCTACACGCTG	.	18	9	1	0	.	0	0	0	0	0	T	53468699	C	T	53468699	2	4	20	1	0	0	0	0	0	0	0	1	13145	489	17	3		3	RBL2	16	53468699	Silent	SNP	C	TCGA-OR-A5JR-01A-11D-A29I-10	4153401	53468699	36886054	52	3678										
CCDC102A	92922	hgsc.bcm.edu	37	chr16	57562804	57562804	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0289855072463768	2	1	0.718138321009134	1.36446280991736	0.487308146399056	1	1	0	ggcagtgcagtccgaccaccGgcgcatggtcttctccatct	11	15	3	0	rs12935069		TCGA-OR-A5JR-01A-11D-A29I-10	TCGA-OR-A5JR-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6625a9c0-ac73-4f14-a02d-7a8e64f7b2bb	8ea6498c-da66-42fc-bb2a-b4f5e02c0438	.	CCDC102A-91	NM_033212	exon2	c.C286T	p.R96W	ACCACCGGCGCAT	.	7	7	0	0	G|0.001;A|0.999	0	0	0	0	0	A	57562804	G	A	57562804	3	1	20	1	0	0	0	0	1	0	0	0	2742	1115	39	1	1398	1	CCDC102A	16	57562804	Missense_Mutation	SNP	G	TCGA-OR-A5JR-01A-11D-A29I-10	4094105	57562804	32791949	53	3679										
ZFPM1	161882	hgsc.bcm.edu	37	chr16	88599697	88599705	+	In_Frame_Del	DEL	AGCCTCTGG	AGCCTCTGG	-													0.0289855072463768	2	1	0.718138321009134	1.36446280991736	0.487308146399056	1	1	0	caacggagaggccagagcggAgcctctggcccagaatggag					novel		TCGA-OR-A5JR-01A-11D-A29I-10	TCGA-OR-A5JR-10A-01D-A29L-10	AGCCTCTGG	AGCCTCTGG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6625a9c0-ac73-4f14-a02d-7a8e64f7b2bb	8ea6498c-da66-42fc-bb2a-b4f5e02c0438	.	ZFPM1-90	NM_153813	exon10	c.1331_1339del	p.444_447del	GAGCGGAGCCTCT	.	24	0	2	0	.	0	0	0	0	0	-	88599705	AGCCTCTGG	-	88599697	7	5	20	1	0	1	0	1	0	0	0	0	17694	304	11	0	1369	0	ZFPM1	16	88599697	In_Frame_Del	DEL	AGCCTCTGG	TCGA-OR-A5JR-01A-11D-A29I-10	31036893	88599697	1755056	54	3680										
STXBP4	252983	broad.mit.edu;bcgsc.ca	37	chr17	53063612	53063612	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0289855072463768	2	1	0.718138321009134	1.36446280991736	0.487308146399056	1	1	0	tacatctactgtagtatcacCcagtctacttgaaaagtaat	5	9	3	1	novel		TCGA-OR-A5JR-01A-11D-A29I-10	TCGA-OR-A5JR-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6625a9c0-ac73-4f14-a02d-7a8e64f7b2bb	8ea6498c-da66-42fc-bb2a-b4f5e02c0438	.	STXBP4-91	NM_178509	exon3	c.C32T	p.P11L	TATCACCCAGTCT	.	157	6	214	0	.	1	1	0	0	0	T	53063612	C	T	53063612	3	4	20	1	0	0	0	0	1	0	0	0	15392	623	22	3	34	3	STXBP4	17	53063612	Missense_Mutation	SNP	C	TCGA-OR-A5JR-01A-11D-A29I-10		53063612	28131598	55	3681										
SALL3	27164	hgsc.bcm.edu	37	chr18	76752544	76752545	+	Missense_Mutation	DNP	GC	GC	TT													0.0289855072463768	2	1	0.718138321009134	1.36446280991736	0.487308146399056	1	1	0	tggcgcagttctcgcagggcGcgcgcgcggcaggcggctcg					novel		TCGA-OR-A5JR-01A-11D-A29I-10	TCGA-OR-A5JR-10A-01D-A29L-10	GC	GC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6625a9c0-ac73-4f14-a02d-7a8e64f7b2bb	8ea6498c-da66-42fc-bb2a-b4f5e02c0438	.	SALL3-155	NM_171999	exon2	c.C554T	p.A185L	AGGGCGCGCGCGC	.	9	4	0	0	C|0.967;T|0.033	0	0	0	0	0	TT	76752545	GC	TT	76752544	3	4	20	1	0	0	0	0	1	0	0	0	13847	1087	38	2	559	2	SALL3	18	76752544	Missense_Mutation	DNP	GC	TCGA-OR-A5JR-01A-11D-A29I-10		76752544	1324704	56	3682										
TCF3	6929	hgsc.bcm.edu	37	chr19	1619348	1619348	+	Silent	SNP	G	G	A													0.0289855072463768	2	1	0.718138321009134	1.36446280991736	0.487308146399056	1	1	0	cgcccgcccagtgacatgggGccggtgaaacctgaggccag					rs1052696	byfrequency	TCGA-OR-A5JR-01A-11D-A29I-10	TCGA-OR-A5JR-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6625a9c0-ac73-4f14-a02d-7a8e64f7b2bb	8ea6498c-da66-42fc-bb2a-b4f5e02c0438	.	TCF3-721	NM_003200	exon15	c.C1293T	p.G431G	CATGGGGCCGGTG	.	8	7	1	0	G|0.903;A|0.097	0	0	0	0	0	A	1619348	G	A	1619348	2	1	20	1	0	0	0	0	0	0	0	1	15731	1190	42	3		3	TCF3	19	1619348	Silent	SNP	G	TCGA-OR-A5JR-01A-11D-A29I-10		1619348	57509635	57	3683	30	2								
TCF3	6929	hgsc.bcm.edu	37	chr19	1619350	1619350	+	Missense_Mutation	SNP	C	C	T													0.0289855072463768	2	1	0.718138321009134	1.36446280991736	0.487308146399056	1	1	0	cccgcccagtgacatggggcCggtgaaacctgaggccagcg					rs1052692	byfrequency	TCGA-OR-A5JR-01A-11D-A29I-10	TCGA-OR-A5JR-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6625a9c0-ac73-4f14-a02d-7a8e64f7b2bb	8ea6498c-da66-42fc-bb2a-b4f5e02c0438	.	TCF3-721	NM_003200	exon15	c.G1291A	p.G431S	TGGGGCCGGTGAA	.	8	7	1	0	C|0.901;T|0.099	0	0	0	0	0	T	1619350	C	T	1619350	3	4	20	1	0	0	0	0	1	0	0	0	15731	652	23	1	924	1	TCF3	19	1619350	Missense_Mutation	SNP	C	TCGA-OR-A5JR-01A-11D-A29I-10	2	1619350	57509633	58	3684	30	2								
PRKCSH	5589	hgsc.bcm.edu	37	chr19	11558367	11558367	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0289855072463768	2	1	0.718138321009134	1.36446280991736	0.487308146399056	1	1	0	gaggaggaggaggaggaggaGgaggaagaagaggctgaaga	23	1	0	4	novel		TCGA-OR-A5JR-01A-11D-A29I-10	TCGA-OR-A5JR-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6625a9c0-ac73-4f14-a02d-7a8e64f7b2bb	8ea6498c-da66-42fc-bb2a-b4f5e02c0438	.	PRKCSH-90	NM_001001329	exon11	c.G963A	p.E321E	GGAGGAGGAGGAA	.	125	7	95	0	.	71	71	0	0	0	A	11558367	G	A	11558367	2	1	20	1	0	0	0	0	0	0	0	1	12548	991	35	3		3	PRKCSH	19	11558367	Silent	SNP	G	TCGA-OR-A5JR-01A-11D-A29I-10	9939017	11558367	47570616	59	3685										
CILP2	148113	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	19656298	19656298	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0289855072463768	2	1	0.718138321009134	1.36446280991736	0.487308146399056	1	1	0	cccggagtgtgcgagaccccGagcgtccgggcacctcggca	15	16	0	1	novel		TCGA-OR-A5JR-01A-11D-A29I-10	TCGA-OR-A5JR-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6625a9c0-ac73-4f14-a02d-7a8e64f7b2bb	8ea6498c-da66-42fc-bb2a-b4f5e02c0438	.	CILP2-91	NM_153221	exon8	c.G2944A	p.E982K	GACCCCGAGCGTC	.	95	31	33	0	.	1	1	0	0	0	A	19656298	G	A	19656298	3	1	20	1	0	0	0	0	1	0	0	0	3436	1059	37	1	2974	1	CILP2	19	19656298	Missense_Mutation	SNP	G	TCGA-OR-A5JR-01A-11D-A29I-10	8097931	19656298	39472685	60	3686										
PLEKHF1	79156	hgsc.bcm.edu	37	chr19	30165225	30165225	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0289855072463768	2	1	0.718138321009134	1.36446280991736	0.487308146399056	1	1	0	ggccacggacatctgcatgcGctgcacgcagacgcgcttct	12	15	2	1	novel		TCGA-OR-A5JR-01A-11D-A29I-10	TCGA-OR-A5JR-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6625a9c0-ac73-4f14-a02d-7a8e64f7b2bb	8ea6498c-da66-42fc-bb2a-b4f5e02c0438	.	PLEKHF1-226	NM_024310	exon2	c.G479A	p.R160H	GCATGCGCTGCAC	.	17	8	2	0	.	1	1	0	0	0	A	30165225	G	A	30165225	3	1	20	1	0	0	0	0	1	0	0	0	12095	1087	38	1	481	1	PLEKHF1	19	30165225	Missense_Mutation	SNP	G	TCGA-OR-A5JR-01A-11D-A29I-10	10508927	30165225	28963758	61	3687										
RGS9BP	388531	hgsc.bcm.edu	37	chr19	33167455	33167455	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0289855072463768	2	1	0.718138321009134	1.36446280991736	0.487308146399056	1	1	0	tggaagcggacatgcgacgcGcgctggagctgggcgccgcg	19	12	0	0	rs259290	byfrequency	TCGA-OR-A5JR-01A-11D-A29I-10	TCGA-OR-A5JR-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6625a9c0-ac73-4f14-a02d-7a8e64f7b2bb	8ea6498c-da66-42fc-bb2a-b4f5e02c0438	.	RGS9BP-90	NM_207391	exon1	c.G286T	p.A96S	CGACGCGCGCTGG	.	5	5	0	0	G|0.540;T|0.460	0	0	0	0	0	T	33167455	G	T	33167455	3	4	20	1	0	0	0	0	1	0	0	0	13349	1087	38	2	288	2	RGS9BP	19	33167455	Missense_Mutation	SNP	G	TCGA-OR-A5JR-01A-11D-A29I-10	3002230	33167455	25961528	62	3688										
ERCC2	2068	hgsc.bcm.edu	37	chr19	45867259	45867259	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0289855072463768	2	1	0.718138321009134	1.36446280991736	0.487308146399056	1	1	0	ctcaccctgcagcacttcgtCgggcagcacggggttggcca	13	15	1	0	rs1799793	byfrequency	TCGA-OR-A5JR-01A-11D-A29I-10	TCGA-OR-A5JR-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6625a9c0-ac73-4f14-a02d-7a8e64f7b2bb	8ea6498c-da66-42fc-bb2a-b4f5e02c0438	.	ERCC2-848	NM_000400	exon10	c.G934A	p.D312N	CTTCGTCGGGCAG	.	19	12	1	0	C|0.804;T|0.196	14	1	13	0	0	T	45867259	C	T	45867259	3	4	20	1	0	0	0	0	1	0	0	0	5226	884	31	1	1461	1	ERCC2	19	45867259	Missense_Mutation	SNP	C	TCGA-OR-A5JR-01A-11D-A29I-10	12699804	45867259	13261724	63	3689										
PTGIR	5739	hgsc.bcm.edu	37	chr19	47127324	47127324	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0289855072463768	2	1	0.718138321009134	1.36446280991736	0.487308146399056	1	1	0	tcggtggccgccagtccggtCaccagcaccgcgaaggccga	14	16	1	0	rs2229128	byfrequency	TCGA-OR-A5JR-01A-11D-A29I-10	TCGA-OR-A5JR-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6625a9c0-ac73-4f14-a02d-7a8e64f7b2bb	8ea6498c-da66-42fc-bb2a-b4f5e02c0438	.	PTGIR-522	NM_000960	exon2	c.G159C	p.V53V	TCCGGTCACCAGC	.	8	4	0	0	C|0.254;G|0.746	0	0	0	0	0	G	47127324	C	G	47127324	2	3	20	1	0	0	0	0	0	0	0	1	12784	813	29	3		3	PTGIR	19	47127324	Silent	SNP	C	TCGA-OR-A5JR-01A-11D-A29I-10	1260065	47127324	12001659	64	3690										
TPRX1	284355	ucsc.edu	37	chr19	48305650	48305650	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0289855072463768	2	1	0.718138321009134	1.36446280991736	0.487308146399056	1	1	0	cctgagattgggcctgggatCgggcctgggatcgggactga	18	9	0	2	rs112397458	bycluster;byfrequency;by1000genomes	TCGA-OR-A5JR-01A-11D-A29I-10	TCGA-OR-A5JR-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6625a9c0-ac73-4f14-a02d-7a8e64f7b2bb	8ea6498c-da66-42fc-bb2a-b4f5e02c0438	.	TPRX1-90	NM_198479	exon2	c.G618A	p.P206P	TGGGATCGGGCCT	.	46	10	31	0	C|0.912;T|0.088	0	0	0	0	0	T	48305650	C	T	48305650	2	4	20	1	0	0	0	0	0	0	0	1	16460	871	31	1		1	TPRX1	19	48305650	Silent	SNP	C	TCGA-OR-A5JR-01A-11D-A29I-10	1178326	48305650	10823333	65	3691										
GYS1	2997	bcgsc.ca	37	chr19	49485548	49485548	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0289855072463768	2	1	0.718138321009134	1.36446280991736	0.487308146399056	1	1	0	agccgagccaatgcctccagGaagacgtcagcacccttgtt	10	14	1	1	rs5464	bycluster;byfrequency;by1000genomes	TCGA-OR-A5JR-01A-11D-A29I-10	TCGA-OR-A5JR-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6625a9c0-ac73-4f14-a02d-7a8e64f7b2bb	8ea6498c-da66-42fc-bb2a-b4f5e02c0438	.	GYS1-524	NM_002103	exon7	c.C1026T	p.F342F	CTCCAGGAAGACG	.	253	10	151	1	G|0.713;A|0.287	94	94	0	0	0	A	49485548	G	A	49485548	2	1	20	1	0	0	0	0	0	0	0	1	6933	1165	41	3		3	GYS1	19	49485548	Silent	SNP	G	TCGA-OR-A5JR-01A-11D-A29I-10	1179898	49485548	9643435	66	3692										
ZNF814	730051	hgsc.bcm.edu	37	chr19	58385790	58385790	+	Missense_Mutation	SNP	G	G	T													0.0289855072463768	2	1	0.718138321009134	1.36446280991736	0.487308146399056	1	1	0	cacattctccacattcataaGgtcttttcccagtgtgaact					rs111727691		TCGA-OR-A5JR-01A-11D-A29I-10	TCGA-OR-A5JR-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6625a9c0-ac73-4f14-a02d-7a8e64f7b2bb	8ea6498c-da66-42fc-bb2a-b4f5e02c0438	.	.	NM_001144989	exon3	c.C968A	p.P323H	TCATAAGGTCTTT	.	114	15	103	0	G|0.500;T|0.500	9	9	0	0	0	T	58385790	G	T	58385790	3	4	20	1	0	0	0	0	1	0	0	0	18213	1000	35	3	1603	3	ZNF814	19	58385790	Missense_Mutation	SNP	G	TCGA-OR-A5JR-01A-11D-A29I-10	8900242	58385790	743193	67	3693	31	3								
ZNF814	730051	hgsc.bcm.edu	37	chr19	58385793	58385793	+	Missense_Mutation	SNP	C	C	T													0.0289855072463768	2	1	0.718138321009134	1.36446280991736	0.487308146399056	1	1	0	attctccacattcataaggtCttttcccagtgtgaactctc					rs113623532		TCGA-OR-A5JR-01A-11D-A29I-10	TCGA-OR-A5JR-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6625a9c0-ac73-4f14-a02d-7a8e64f7b2bb	8ea6498c-da66-42fc-bb2a-b4f5e02c0438	.	.	NM_001144989	exon3	c.G965A	p.R322K	TAAGGTCTTTTCC	.	109	13	101	0	C|0.500;T|0.500	9	9	0	0	0	T	58385793	C	T	58385793	3	4	20	1	0	0	0	0	1	0	0	0	18213	913	32	3	1606	3	ZNF814	19	58385793	Missense_Mutation	SNP	C	TCGA-OR-A5JR-01A-11D-A29I-10	3	58385793	743190	68	3694	31	3								
ZNF814	730051	hgsc.bcm.edu	37	chr19	58385798	58385799	+	Missense_Mutation	DNP	CC	CC	TT													0.0289855072463768	2	1	0.718138321009134	1.36446280991736	0.487308146399056	1	1	0	ccacattcataaggtcttttCccagtgtgaactctctgatg					novel		TCGA-OR-A5JR-01A-11D-A29I-10	TCGA-OR-A5JR-10A-01D-A29L-10	CC	CC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6625a9c0-ac73-4f14-a02d-7a8e64f7b2bb	8ea6498c-da66-42fc-bb2a-b4f5e02c0438	.	.	NM_001144989	exon3	c.G959A	p.G320E	CTTTTCCCAGTGT	.	97	6	91	0	.	0	0	0	0	0	TT	58385799	CC	TT	58385798	3	4	20	1	0	0	0	0	1	0	0	0	18213	842	30	3	1611	3	ZNF814	19	58385798	Missense_Mutation	DNP	CC	TCGA-OR-A5JR-01A-11D-A29I-10	5	58385798	743185	69	3695	31	3								
ZBTB45	84878	hgsc.bcm.edu	37	chr19	59028585	59028585	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0289855072463768	2	1	0.718138321009134	1.36446280991736	0.487308146399056	1	1	0	gcagccagcaggtggcgcagGcggtgacgcagctgcgcagg	19	12	0	1	rs11545185	byfrequency	TCGA-OR-A5JR-01A-11D-A29I-10	TCGA-OR-A5JR-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6625a9c0-ac73-4f14-a02d-7a8e64f7b2bb	8ea6498c-da66-42fc-bb2a-b4f5e02c0438	.	ZBTB45-90	NM_032792	exon2	c.C456T	p.R152R	GCGCAGGCGGTGA	.	9	4	0	0	G|0.844;A|0.156	7	3	4	0	0	A	59028585	G	A	59028585	2	1	20	1	0	0	0	0	0	0	0	1	17583	1190	42	3		3	ZBTB45	19	59028585	Silent	SNP	G	TCGA-OR-A5JR-01A-11D-A29I-10	642787	59028585	100398	70	3696										
TCF15	6939	hgsc.bcm.edu	37	chr20	590456	590456	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0289855072463768	2	1	0.718138321009134	1.36446280991736	0.487308146399056	1	1	0	cccttggcactgcccgcggcAcggaagcacggctgcccgtc	13	18	0	0	rs282164	byfrequency	TCGA-OR-A5JR-01A-11D-A29I-10	TCGA-OR-A5JR-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6625a9c0-ac73-4f14-a02d-7a8e64f7b2bb	8ea6498c-da66-42fc-bb2a-b4f5e02c0438	.	TCF15-90	NM_004609	exon1	c.T426C	p.R142R	CGCGGCACGGAAG	.	11	11	0	0	A|0.165;G|0.835	0	0	0	0	0	G	590456	A	G	590456	2	3	20	1	0	0	0	0	0	0	0	1	15725	146	6	4		4	TCF15	20	590456	Silent	SNP	A	TCGA-OR-A5JR-01A-11D-A29I-10		590456	62435064	71	3697										
SCARF2	91179	hgsc.bcm.edu	37	chr22	20780097	20780097	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0289855072463768	2	1	0.718138321009134	1.36446280991736	0.487308146399056	1	1	0	tcctcgggcagccccgggggGcgcggcgttgggtcgcgggt	21	13	0	0	rs759609	bycluster;byfrequency;by1000genomes	TCGA-OR-A5JR-01A-11D-A29I-10	TCGA-OR-A5JR-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	6625a9c0-ac73-4f14-a02d-7a8e64f7b2bb	8ea6498c-da66-42fc-bb2a-b4f5e02c0438	.	SCARF2-341	NM_153334	exon11	c.C2181G	p.R727R	CGGGGGGCGCGGC	.	4	4	0	0	G|0.826;C|0.174	0	0	0	0	0	C	20780097	G	C	20780097	2	2	20	1	0	0	0	0	0	0	0	1	13919	1190	42	3		3	SCARF2	22	20780097	Silent	SNP	G	TCGA-OR-A5JR-01A-11D-A29I-10		20780097	30524469	72	3698										
LRRC8B	23507	bcgsc.ca	37	chr1	90049075	90049075	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0465116279069767	4	0.962598768336772	1.19864071671301	3.89558232931727	0.389558232931727	0.485714285714286	1	0	catcactcttgaaatcgactGttcagttgatgtgcaggctt	9	9	3	2	novel		TCGA-OR-A5JT-01A-11D-A29I-10	TCGA-OR-A5JT-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac406c92-67af-4d6c-a981-610bd6c674bd	1795e496-6515-464d-9d01-7d391fc0a20e	.	LRRC8B-92	NM_015350	exon5	c.G866T	p.C289F	TCGACTGTTCAGT	.	32	4	51	0	.	8	8	0	0	0	T	90049075	G	T	90049075	3	4	21	1	0	0	0	0	1	0	0	0	9049	1377	48	3	868	3	LRRC8B	1	90049075	Missense_Mutation	SNP	G	TCGA-OR-A5JT-01A-11D-A29I-10		90049075	159201546	1	3699										
CSDE1	7812	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	115261240	115261241	+	Frame_Shift_Ins	INS	-	-	T													0.0465116279069767	4	0.962598768336772	1.19864071671301	3.89558232931727	0.389558232931727	0.485714285714286	1	0	tatgccctcataccattgagINSttatctggtccccttggctg					novel		TCGA-OR-A5JT-01A-11D-A29I-10	TCGA-OR-A5JT-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac406c92-67af-4d6c-a981-610bd6c674bd	1795e496-6515-464d-9d01-7d391fc0a20e	.	CSDE1-227	NM_001242891	exon20	c.2481_2482insA	p.N827fs	CATTGAGTTATCT	.	82	35	95	0	.	0	0	0	0	0	T	115261241	-	T	115261240	7	5	21	1	0	1	1	0	0	0	0	0	3935	1020	36	0	61	0	CSDE1	1	115261240	Frame_Shift_Ins	INS	-	TCGA-OR-A5JT-01A-11D-A29I-10	25212165	115261240	133989381	2	3700										
TOR3A	64222	hgsc.bcm.edu	37	chr1	179051300	179051300	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0465116279069767	4	0.962598768336772	1.19864071671301	3.89558232931727	0.389558232931727	0.485714285714286	1	0	ggcgccagctttggctctttTtcctgctgctgctcccgggc	12	15	1	0	rs2296377	byfrequency	TCGA-OR-A5JT-01A-11D-A29I-10	TCGA-OR-A5JT-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac406c92-67af-4d6c-a981-610bd6c674bd	1795e496-6515-464d-9d01-7d391fc0a20e	.	TOR3A-90	NM_022371	exon1	c.T37C	p.F13L	CTCTTTTTCCTGC	.	4	4	0	0	T|0.229;C|0.771	4	0	4	0	0	C	179051300	T	C	179051300	3	2	21	1	0	0	0	0	1	0	0	0	16414	1841	64	4	39	4	TOR3A	1	179051300	Missense_Mutation	SNP	T	TCGA-OR-A5JT-01A-11D-A29I-10	63790060	179051300	70199321	3	3701										
GEN1	348654	hgsc.bcm.edu	37	chr2	17942677	17942677	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0465116279069767	4	0.962598768336772	1.19864071671301	3.89558232931727	0.389558232931727	0.485714285714286	1	0	tttcaggaacttattttttcGtatctcatatttaacacaaa	3	7	2	0	novel		TCGA-OR-A5JT-01A-11D-A29I-10	TCGA-OR-A5JT-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac406c92-67af-4d6c-a981-610bd6c674bd	1795e496-6515-464d-9d01-7d391fc0a20e	.	GEN1-359	NM_182625	exon3	c.G176T	p.R59L	TTTTTCGTATCTC	.	72	5	115	0	.	1	1	0	0	0	T	17942677	G	T	17942677	3	4	21	1	0	0	0	0	1	0	0	0	6355	1145	40	2	182	2	GEN1	2	17942677	Missense_Mutation	SNP	G	TCGA-OR-A5JT-01A-11D-A29I-10		17942677	225256696	4	3702										
PSD4	23550	bcgsc.ca	37	chr2	113956371	113956371	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0465116279069767	4	0.962598768336772	1.19864071671301	3.89558232931727	0.389558232931727	0.485714285714286	1	0	atcaacttggctgcggccacGcactccgcgccgcccttccc	9	20	1	0	rs2276561	byfrequency	TCGA-OR-A5JT-01A-11D-A29I-10	TCGA-OR-A5JT-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac406c92-67af-4d6c-a981-610bd6c674bd	1795e496-6515-464d-9d01-7d391fc0a20e	.	PSD4-229	NM_012455	exon15	c.G2679C	p.T893T	GGCCACGCACTCC	.	34	29	14	1	G|0.570;C|0.430	22	0	22	0	0	C	113956371	G	C	113956371	2	2	21	1	0	0	0	0	0	0	0	1	12681	1074	38	2		2	PSD4	2	113956371	Silent	SNP	G	TCGA-OR-A5JT-01A-11D-A29I-10	96013694	113956371	129243002	5	3703										
BAZ2B	29994	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	160245862	160245862	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0465116279069767	4	0.962598768336772	1.19864071671301	3.89558232931727	0.389558232931727	0.485714285714286	1	0	gacgtataaattaccttttgGtctgctaagcacatgtcttc	7	9	2	0	novel		TCGA-OR-A5JT-01A-11D-A29I-10	TCGA-OR-A5JT-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac406c92-67af-4d6c-a981-610bd6c674bd	1795e496-6515-464d-9d01-7d391fc0a20e	.	BAZ2B-94	NM_013450	exon21	c.C3210A	p.D1070E	CTTTTGGTCTGCT	.	54	5	64	0	.	0	0	0	0	0	T	160245862	G	T	160245862	3	4	21	1	0	0	0	0	1	0	0	0	1333	1252	44	3	3364	3	BAZ2B	2	160245862	Missense_Mutation	SNP	G	TCGA-OR-A5JT-01A-11D-A29I-10	46289491	160245862	82953511	6	3704										
GPR155	151556	bcgsc.ca	37	chr2	175300997	175300997	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0465116279069767	4	0.962598768336772	1.19864071671301	3.89558232931727	0.389558232931727	0.485714285714286	1	0	tcatcccggaattcatactcGttggtaatatgttggatgac	9	8	2	1	rs6757461	byfrequency	TCGA-OR-A5JT-01A-11D-A29I-10	TCGA-OR-A5JT-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac406c92-67af-4d6c-a981-610bd6c674bd	1795e496-6515-464d-9d01-7d391fc0a20e	.	GPR155-91	NM_001033045	exon17	c.C2460T	p.N820N	ATACTCGTTGGTA	.	91	5	97	0	G|0.734;A|0.266	8	8	0	0	0	A	175300997	G	A	175300997	2	1	21	1	0	0	0	0	0	0	0	1	6680	1136	40	1		1	GPR155	2	175300997	Silent	SNP	G	TCGA-OR-A5JT-01A-11D-A29I-10	15055135	175300997	67898376	7	3705										
XPC	7508	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	14207051	14207051	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0465116279069767	4	0.962598768336772	1.19864071671301	3.89558232931727	0.389558232931727	0.485714285714286	1	0	ggctgcagatgttatttcgaTagaagccatttgctagcagg	12	7	0	2	novel		TCGA-OR-A5JT-01A-11D-A29I-10	TCGA-OR-A5JT-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac406c92-67af-4d6c-a981-610bd6c674bd	1795e496-6515-464d-9d01-7d391fc0a20e	.	XPC-662	NM_004628	exon6	c.A656G	p.Y219C	TTTCGATAGAAGC	.	110	26	127	0	.	11	9	2	0	0	C	14207051	T	C	14207051	3	2	21	1	0	0	0	0	1	0	0	0	17479	1406	49	4	1159	4	XPC	3	14207051	Missense_Mutation	SNP	T	TCGA-OR-A5JT-01A-11D-A29I-10		14207051	183815379	8	3706										
CRIPAK	285464	hgsc.bcm.edu	37	chr4	1388755	1388755	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0465116279069767	4	0.962598768336772	1.19864071671301	3.89558232931727	0.389558232931727	0.485714285714286	1	0	cccgcctgctcacacgtgccCatgcggagtgcccgcctgct	11	19	1	0	rs141481663	byfrequency	TCGA-OR-A5JT-01A-11D-A29I-10	TCGA-OR-A5JT-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac406c92-67af-4d6c-a981-610bd6c674bd	1795e496-6515-464d-9d01-7d391fc0a20e	.	CRIPAK-90	NM_175918	exon1	c.C456G	p.P152P	CGTGCCCATGCGG	.	117	47	13	0	C|0.960;G|0.040	23	10	13	0	0	G	1388755	C	G	1388755	2	3	21	1	0	0	0	0	0	0	0	1	3883	581	21	3		3	CRIPAK	4	1388755	Silent	SNP	C	TCGA-OR-A5JT-01A-11D-A29I-10		1388755	189765521	9	3707										
CRMP1	1400	hgsc.bcm.edu	37	chr4	5894586	5894586	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0465116279069767	4	0.962598768336772	1.19864071671301	3.89558232931727	0.389558232931727	0.485714285714286	1	0	tcgtaggcgccctccaccgcGgcgaacatgccgccgtactt	11	17	0	0	rs143304363		TCGA-OR-A5JT-01A-11D-A29I-10	TCGA-OR-A5JT-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac406c92-67af-4d6c-a981-610bd6c674bd	1795e496-6515-464d-9d01-7d391fc0a20e	.	CRMP1-92	NM_001014809	exon1	c.C111T	p.A37A	CACCGCGGCGAAC	.	23	14	0	0	G|0.946;A|0.054	0	0	0	0	0	A	5894586	G	A	5894586	2	1	21	1	0	0	0	0	0	0	0	1	3896	1103	39	1		1	CRMP1	4	5894586	Silent	SNP	G	TCGA-OR-A5JT-01A-11D-A29I-10	4505831	5894586	185259690	10	3708										
SOD3	6649	hgsc.bcm.edu	37	chr4	24801354	24801354	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0465116279069767	4	0.962598768336772	1.19864071671301	3.89558232931727	0.389558232931727	0.485714285714286	1	0	aggtgcagccgtcggccacgCtggacgccgcgcagccccgg	16	17	0	0	rs8192291	byfrequency	TCGA-OR-A5JT-01A-11D-A29I-10	TCGA-OR-A5JT-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac406c92-67af-4d6c-a981-610bd6c674bd	1795e496-6515-464d-9d01-7d391fc0a20e	.	SOD3-90	NM_003102	exon2	c.C211T	p.L71L	GCCACGCTGGACG	.	26	19	3	0	C|0.777;T|0.223	18	7	11	0	0	T	24801354	C	T	24801354	2	4	21	1	0	0	0	0	0	0	0	1	14957	796	28	3		3	SOD3	4	24801354	Silent	SNP	C	TCGA-OR-A5JT-01A-11D-A29I-10	18906768	24801354	166352922	11	3709										
NMU	10874	hgsc.bcm.edu	37	chr4	56502304	56502304	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0465116279069767	4	0.962598768336772	1.19864071671301	3.89558232931727	0.389558232931727	0.485714285714286	1	0	gcagcagcaggagcggggacGccgcggccacctgtccggcg	18	15	0	0	rs35771241		TCGA-OR-A5JT-01A-11D-A29I-10	TCGA-OR-A5JT-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac406c92-67af-4d6c-a981-610bd6c674bd	1795e496-6515-464d-9d01-7d391fc0a20e	.	NMU-650	NM_006681	exon1	c.C56A	p.A19E	GGGGACGCCGCGG	.	18	13	0	0	G|0.970;T|0.030	1	0	1	0	0	T	56502304	G	T	56502304	3	4	21	1	0	0	0	0	1	0	0	0	10534	1087	38	2	504	2	NMU	4	56502304	Missense_Mutation	SNP	G	TCGA-OR-A5JT-01A-11D-A29I-10	31700950	56502304	134651972	12	3710										
MTHFD2L	441024	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	75065574	75065574	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0465116279069767	4	0.962598768336772	1.19864071671301	3.89558232931727	0.389558232931727	0.485714285714286	1	0	aaaagatgtagatggatttcAtattatcaatattggaagat	8	2	2	3	novel		TCGA-OR-A5JT-01A-11D-A29I-10	TCGA-OR-A5JT-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac406c92-67af-4d6c-a981-610bd6c674bd	1795e496-6515-464d-9d01-7d391fc0a20e	.	MTHFD2L-91	NM_001144978	exon4	c.A515G	p.H172R	GATTTCATATTAT	.	93	34	59	0	.	8	2	6	0	0	G	75065574	A	G	75065574	3	3	21	1	0	0	0	0	1	0	0	0	9958	217	8	4	529	4	MTHFD2L	4	75065574	Missense_Mutation	SNP	A	TCGA-OR-A5JT-01A-11D-A29I-10	18563270	75065574	116088702	13	3711										
WDFY3	23001	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	85594085	85594085	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0465116279069767	4	0.962598768336772	1.19864071671301	3.89558232931727	0.389558232931727	0.485714285714286	1	0	agttataataacagttctgaCaaacacgcaccggggatgag	10	8	1	2	novel		TCGA-OR-A5JT-01A-11D-A29I-10	TCGA-OR-A5JT-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac406c92-67af-4d6c-a981-610bd6c674bd	1795e496-6515-464d-9d01-7d391fc0a20e	.	WDFY3-93	NM_014991	exon68	c.G10517A	p.C3506Y	TTCTGACAAACAC	.	99	50	66	0	.	23	14	9	0	0	T	85594085	C	T	85594085	3	4	21	1	0	0	0	0	1	0	0	0	17308	478	17	3	67	3	WDFY3	4	85594085	Missense_Mutation	SNP	C	TCGA-OR-A5JT-01A-11D-A29I-10	10528511	85594085	105560191	14	3712										
TRAM1L1	133022	broad.mit.edu;bcgsc.ca	37	chr4	118005441	118005441	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0465116279069767	4	0.962598768336772	1.19864071671301	3.89558232931727	0.389558232931727	0.485714285714286	1	0	atcaatgcgcttgcaaagatTatgaagatttctctttcctc	6	9	2	3	novel		TCGA-OR-A5JT-01A-11D-A29I-10	TCGA-OR-A5JT-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac406c92-67af-4d6c-a981-610bd6c674bd	1795e496-6515-464d-9d01-7d391fc0a20e	.	TRAM1L1-90	NM_152402	exon1	c.A1109T	p.X370L	AAAGATTATGAAG	.	49	18	52	1	.	2	0	2	0	0	A	118005441	T	A	118005441	3	1	21	1	0	0	0	0	1	0	0	0	16490	1761	61	5	4	5	TRAM1L1	4	118005441	Missense_Mutation	SNP	T	TCGA-OR-A5JT-01A-11D-A29I-10	32411356	118005441	73148835	15	3713										
CLPTM1L	81037	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	1334422	1334422	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0465116279069767	4	0.962598768336772	1.19864071671301	3.89558232931727	0.389558232931727	0.485714285714286	1	0	acatggaacgctgcgacaaaGaaggtcagcgccaggaagta	13	9	1	1	novel		TCGA-OR-A5JT-01A-11D-A29I-10	TCGA-OR-A5JT-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac406c92-67af-4d6c-a981-610bd6c674bd	1795e496-6515-464d-9d01-7d391fc0a20e	.	CLPTM1L-153	NM_030782	exon7	c.C873G	p.F291L	GACAAAGAAGGTC	.	62	14	60	0	.	32	32	0	0	0	C	1334422	G	C	1334422	3	2	21	1	0	0	0	0	1	0	0	0	3561	933	33	3	787	3	CLPTM1L	5	1334422	Missense_Mutation	SNP	G	TCGA-OR-A5JT-01A-11D-A29I-10		1334422	179580838	16	3714										
SLC45A2	51151	ucsc.edu;mdanderson.org	37	chr5	33954511	33954511	+	Silent	SNP	C	C	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0465116279069767	4	0.962598768336772	1.19864071671301	3.89558232931727	0.389558232931727	0.485714285714286	1	0	agcatgttggacaggaaggcTgtccatccaatgaggtggct	14	8	0	1	rs2287949	byfrequency;alternate_allele	TCGA-OR-A5JT-01A-11D-A29I-10	TCGA-OR-A5JT-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac406c92-67af-4d6c-a981-610bd6c674bd	1795e496-6515-464d-9d01-7d391fc0a20e	.	SLC45A2-93	NM_016180	exon4	c.A987T	p.T329T	GAAGGCTGTCCAT	.	390	83	223	1	C|0.922;T|0.078	0	0	0	0	0	A	33954511	C	A	33954511	2	1	21	1	0	0	0	0	0	0	0	1	14676	1567	55	5		5	SLC45A2	5	33954511	Silent	SNP	C	TCGA-OR-A5JT-01A-11D-A29I-10	32620089	33954511	146960749	17	3715										
PSD2	84249	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	139197105	139197105	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0465116279069767	4	0.962598768336772	1.19864071671301	3.89558232931727	0.389558232931727	0.485714285714286	1	0	gtggccggggagtacctcagTttcttcgacttctcgggctt	13	11	3	0	novel		TCGA-OR-A5JT-01A-11D-A29I-10	TCGA-OR-A5JT-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac406c92-67af-4d6c-a981-610bd6c674bd	1795e496-6515-464d-9d01-7d391fc0a20e	.	PSD2-91	NM_032289	exon5	c.T1056C	p.S352S	CCTCAGTTTCTTC	.	140	33	66	0	.	0	0	0	0	0	C	139197105	T	C	139197105	2	2	21	1	0	0	0	0	0	0	0	1	12679	1722	60	4		4	PSD2	5	139197105	Silent	SNP	T	TCGA-OR-A5JT-01A-11D-A29I-10	105242594	139197105	41718155	18	3716										
PCDHB4	56131	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr5	140503194	140503194	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0465116279069767	4	0.962598768336772	1.19864071671301	3.89558232931727	0.389558232931727	0.485714285714286	1	0	gcctcagaccgcggttctccGgctttgagcagcgaggcgct	14	14	2	2	novel		TCGA-OR-A5JT-01A-11D-A29I-10	TCGA-OR-A5JT-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac406c92-67af-4d6c-a981-610bd6c674bd	1795e496-6515-464d-9d01-7d391fc0a20e	.	PCDHB4-93	NM_018938	exon1	c.G1614A	p.P538P	TTCTCCGGCTTTG	.	664	59	173	0	.	0	0	0	0	0	A	140503194	G	A	140503194	2	1	21	1	0	0	0	0	0	0	0	1	11573	1103	39	1		1	PCDHB4	5	140503194	Silent	SNP	G	TCGA-OR-A5JT-01A-11D-A29I-10	1306089	140503194	40412066	19	3717										
SLC6A7	6534	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	149589012	149589012	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0465116279069767	4	0.962598768336772	1.19864071671301	3.89558232931727	0.389558232931727	0.485714285714286	1	0	ggccatggactggggaccatCgctggaggagaaccggacgg	18	10	0	1	novel		TCGA-OR-A5JT-01A-11D-A29I-10	TCGA-OR-A5JT-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac406c92-67af-4d6c-a981-610bd6c674bd	1795e496-6515-464d-9d01-7d391fc0a20e	.	SLC6A7-90	NM_014228	exon14	c.C1745T	p.S582L	GACCATCGCTGGA	.	462	209	293	1	.	0	0	0	0	0	T	149589012	C	T	149589012	3	4	21	1	0	0	0	0	1	0	0	0	14724	893	31	1	1799	1	SLC6A7	5	149589012	Missense_Mutation	SNP	C	TCGA-OR-A5JT-01A-11D-A29I-10	9085818	149589012	31326248	20	3718										
STC2	8614	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	172745041	172745041	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0465116279069767	4	0.962598768336772	1.19864071671301	3.89558232931727	0.389558232931727	0.485714285714286	1	0	gaggtgatgtcctgcttcccCgtggtgggccctggagagct	16	11	0	2	novel		TCGA-OR-A5JT-01A-11D-A29I-10	TCGA-OR-A5JT-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac406c92-67af-4d6c-a981-610bd6c674bd	1795e496-6515-464d-9d01-7d391fc0a20e	.	STC2-93	NM_003714	exon4	c.G718A	p.G240R	CTTCCCCGTGGTG	.	102	20	66	0	.	2	1	1	0	0	T	172745041	C	T	172745041	3	4	21	1	0	0	0	0	1	0	0	0	15313	652	23	1	194	1	STC2	5	172745041	Missense_Mutation	SNP	C	TCGA-OR-A5JT-01A-11D-A29I-10	23156029	172745041	8170219	21	3719										
TBC1D9B	23061	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	179290951	179290951	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0465116279069767	4	0.962598768336772	1.19864071671301	3.89558232931727	0.389558232931727	0.485714285714286	1	0	ttcgggtgctggtggctcgtCctcctcagtggcacagtccc	13	14	1	0	novel		TCGA-OR-A5JT-01A-11D-A29I-10	TCGA-OR-A5JT-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac406c92-67af-4d6c-a981-610bd6c674bd	1795e496-6515-464d-9d01-7d391fc0a20e	.	TBC1D9B-154	NM_198868	exon22	c.G3250A	p.D1084N	GCTCGTCCTCCTC	.	101	26	62	0	.	224	164	60	0	0	T	179290951	C	T	179290951	3	4	21	1	0	0	0	0	1	0	0	0	15665	855	30	3	506	3	TBC1D9B	5	179290951	Missense_Mutation	SNP	C	TCGA-OR-A5JT-01A-11D-A29I-10	6545910	179290951	1624309	22	3720										
GCM1	8521	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	52999074	52999074	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0465116279069767	4	0.962598768336772	1.19864071671301	3.89558232931727	0.389558232931727	0.485714285714286	1	0	ctccgagctgtagatgtgttTggcataggaatctggccact	12	9	1	1	novel		TCGA-OR-A5JT-01A-11D-A29I-10	TCGA-OR-A5JT-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac406c92-67af-4d6c-a981-610bd6c674bd	1795e496-6515-464d-9d01-7d391fc0a20e	.	GCM1-90	NM_003643	exon3	c.A124C	p.K42Q	TGTGTTTGGCATA	.	151	131	192	1	.	0	0	0	0	0	G	52999074	T	G	52999074	3	3	21	1	0	0	0	0	1	0	0	0	6317	1821	63	5	1202	5	GCM1	6	52999074	Missense_Mutation	SNP	T	TCGA-OR-A5JT-01A-11D-A29I-10		52999074	118115993	23	3721										
OGFRL1	79627	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr6	72006483	72006483	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0465116279069767	4	0.962598768336772	1.19864071671301	3.89558232931727	0.389558232931727	0.485714285714286	1	0	aaactggaaatgttgctcggGctgttaactggcaggaaaga	13	6	0	1	novel		TCGA-OR-A5JT-01A-11D-A29I-10	TCGA-OR-A5JT-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac406c92-67af-4d6c-a981-610bd6c674bd	1795e496-6515-464d-9d01-7d391fc0a20e	.	OGFRL1-68	NM_024576	exon6	c.G655T	p.A219S	GCTCGGGCTGTTA	.	42	4	52	0	.	8	8	0	0	0	T	72006483	G	T	72006483	3	4	21	1	0	0	0	0	1	0	0	0	10873	1203	42	3	677	3	OGFRL1	6	72006483	Missense_Mutation	SNP	G	TCGA-OR-A5JT-01A-11D-A29I-10	19007409	72006483	99108584	24	3722										
ALDH8A1	64577	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	135239705	135239705	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0465116279069767	4	0.962598768336772	1.19864071671301	3.89558232931727	0.389558232931727	0.485714285714286	1	0	ccagaccaagccagactgcaGcttcttagccacccggtgga	10	15	1	2	novel		TCGA-OR-A5JT-01A-11D-A29I-10	TCGA-OR-A5JT-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac406c92-67af-4d6c-a981-610bd6c674bd	1795e496-6515-464d-9d01-7d391fc0a20e	.	ALDH8A1-94	NM_022568	exon7	c.C1312A	p.L438M	ACTGCAGCTTCTT	.	141	58	182	1	.	0	0	0	0	0	T	135239705	G	T	135239705	3	4	21	1	0	0	0	0	1	0	0	0	505	962	34	3	155	3	ALDH8A1	6	135239705	Missense_Mutation	SNP	G	TCGA-OR-A5JT-01A-11D-A29I-10	63233222	135239705	35875362	25	3723										
VIP	7432	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr6	153077288	153077288	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0465116279069767	4	0.962598768336772	1.19864071671301	3.89558232931727	0.389558232931727	0.485714285714286	1	0	gcagtaacatctcagaagacCctgtaccagtcaaacgtcac	7	13	3	2	novel		TCGA-OR-A5JT-01A-11D-A29I-10	TCGA-OR-A5JT-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac406c92-67af-4d6c-a981-610bd6c674bd	1795e496-6515-464d-9d01-7d391fc0a20e	.	VIP-90	NM_003381	exon5	c.C355T	p.P119S	GAAGACCCTGTAC	.	49	14	66	0	.	0	0	0	0	0	T	153077288	C	T	153077288	3	4	21	1	0	0	0	0	1	0	0	0	17205	623	22	3	369	3	VIP	6	153077288	Missense_Mutation	SNP	C	TCGA-OR-A5JT-01A-11D-A29I-10	17837583	153077288	18037779	26	3724										
TCP10	6953	ucsc.edu	37	chr6	167791549	167791549	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0465116279069767	4	0.962598768336772	1.19864071671301	3.89558232931727	0.389558232931727	0.485714285714286	1	0	tgtcttcatcagctgacagaTgtgaaatttttccaaaagca	7	8	3	3	rs55819058	bycluster	TCGA-OR-A5JT-01A-11D-A29I-10	TCGA-OR-A5JT-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac406c92-67af-4d6c-a981-610bd6c674bd	1795e496-6515-464d-9d01-7d391fc0a20e	.	TCP10-89	NM_004610	exon4	c.A311C	p.H104P	GACAGATGTGAAA	.	72	41	311	22	G|1.000;|0.000	4	0	4	0	0	G	167791549	T	G	167791549	3	3	21	1	0	0	0	0	1	0	0	0	15747	1464	51	5	689	5	TCP10	6	167791549	Missense_Mutation	SNP	T	TCGA-OR-A5JT-01A-11D-A29I-10	14714261	167791549	3323518	27	3725										
GARS	2617	hgsc.bcm.edu	37	chr7	30634661	30634661	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0465116279069767	4	0.962598768336772	1.19864071671301	3.89558232931727	0.389558232931727	0.485714285714286	1	0	ccctcagcgcggcctcctgcCccccgatctccttgcccgcc	8	24	2	0	rs1049402	byfrequency	TCGA-OR-A5JT-01A-11D-A29I-10	TCGA-OR-A5JT-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac406c92-67af-4d6c-a981-610bd6c674bd	1795e496-6515-464d-9d01-7d391fc0a20e	.	GARS-91	NM_002047	exon1	c.C124G	p.P42A	TCCTGCCCCCCGA	.	10	9	0	0	C|0.329;G|0.671	36	0	36	0	0	G	30634661	C	G	30634661	3	3	21	1	0	0	0	0	1	0	0	0	6262	623	22	3	126	3	GARS	7	30634661	Missense_Mutation	SNP	C	TCGA-OR-A5JT-01A-11D-A29I-10		30634661	128504002	28	3726										
TECPR1	25851	broad.mit.edu;bcgsc.ca	37	chr7	97866139	97866139	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0465116279069767	4	0.962598768336772	1.19864071671301	3.89558232931727	0.389558232931727	0.485714285714286	1	0	accggtcacactctcgggccGcgatgatggctttccaggtc	12	14	2	1	rs199829801	alternate_allele	TCGA-OR-A5JT-01A-11D-A29I-10	TCGA-OR-A5JT-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac406c92-67af-4d6c-a981-610bd6c674bd	1795e496-6515-464d-9d01-7d391fc0a20e	.	TECPR1-91	NM_015395	exon10	c.C1130A	p.A377E	CGGGCCGCGATGA	.	81	5	59	0	G|0.999;A|0.000	7	7	0	0	0	T	97866139	G	T	97866139	3	4	21	1	0	0	0	0	1	0	0	0	15780	1087	38	2	2435	2	TECPR1	7	97866139	Missense_Mutation	SNP	G	TCGA-OR-A5JT-01A-11D-A29I-10	67231478	97866139	61272524	29	3727										
KIAA1549	57670	broad.mit.edu	37	chr7	138555976	138555976	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0465116279069767	4	0.962598768336772	1.19864071671301	3.89558232931727	0.389558232931727	0.485714285714286	1	0	ggacgggaggtgccgggatcGgctgcatggcgataagctgg	20	8	0	0	novel		TCGA-OR-A5JT-01A-11D-A29I-10	TCGA-OR-A5JT-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac406c92-67af-4d6c-a981-610bd6c674bd	1795e496-6515-464d-9d01-7d391fc0a20e	.	KIAA1549-369	NM_020910	exon13	c.C4478A	p.P1493Q	GGGATCGGCTGCA	.	20	3	20	0	.	2	2	0	0	0	T	138555976	G	T	138555976	3	4	21	1	0	0	0	0	1	0	0	0	8265	1116	39	2	1406	2	KIAA1549	7	138555976	Missense_Mutation	SNP	G	TCGA-OR-A5JT-01A-11D-A29I-10	40689837	138555976	20582687	30	3728										
C7orf34	135927	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	142636757	142636757	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.0465116279069767	4	0.962598768336772	1.19864071671301	3.89558232931727	0.389558232931727	0.485714285714286	1	0	cagctctgcagggcagtgttCctggttcctatcttgctgct	11	12	2	0	novel		TCGA-OR-A5JT-01A-11D-A29I-10	TCGA-OR-A5JT-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac406c92-67af-4d6c-a981-610bd6c674bd	1795e496-6515-464d-9d01-7d391fc0a20e	.	C7orf34-90	NM_178829	exon1	c.C114G	p.F38L	AGTGTTCCTGGTT	.	66	34	48	0	.	0	0	0	0	0	G	142636757	C	G	142636757	3	3	21	1	0	0	0	0	1	0	0	0	2395	854	30	3	116	3	C7orf34	7	142636757	Missense_Mutation	SNP	C	TCGA-OR-A5JT-01A-11D-A29I-10	4080781	142636757	16501906	31	3729										
GSTK1	373156	broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr7	142962356	142962356	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0465116279069767	4	0.962598768336772	1.19864071671301	3.89558232931727	0.389558232931727	0.485714285714286	1	0	gtcttctcttcttcccagaaTgaagacatcaccgagccgca	7	14	4	3	novel		TCGA-OR-A5JT-01A-11D-A29I-10	TCGA-OR-A5JT-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac406c92-67af-4d6c-a981-610bd6c674bd	1795e496-6515-464d-9d01-7d391fc0a20e	.	GSTK1-90	NM_001143679	exon4	c.T555C	p.N185N	CCAGAATGAAGAC	.	54	18	37	1	.	15	12	3	0	0	C	142962356	T	C	142962356	2	2	21	1	0	0	0	0	0	0	0	1	6857	1461	51	4		4	GSTK1	7	142962356	Silent	SNP	T	TCGA-OR-A5JT-01A-11D-A29I-10	325599	142962356	16176307	32	3730										
DLGAP2	9228	broad.mit.edu	37	chr8	1649469	1649469	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0465116279069767	4	0.962598768336772	1.19864071671301	3.89558232931727	0.389558232931727	0.485714285714286	1	0	acgccaggaagcccggaggcGcctcatggccgccaagcgag	15	15	1	0	novel		TCGA-OR-A5JT-01A-11D-A29I-10	TCGA-OR-A5JT-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac406c92-67af-4d6c-a981-610bd6c674bd	1795e496-6515-464d-9d01-7d391fc0a20e	.	DLGAP2-22	NM_004745	exon12	c.G2825T	p.R942L	GGAGGCGCCTCAT	.	144	6	75	0	.	0	0	0	0	0	T	1649469	G	T	1649469	3	4	21	1	0	0	0	0	1	0	0	0	4571	1087	38	2	2867	2	DLGAP2	8	1649469	Missense_Mutation	SNP	G	TCGA-OR-A5JT-01A-11D-A29I-10		1649469	144714553	33	3731										
MYOM2	9172	broad.mit.edu	37	chr8	2021562	2021562	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0465116279069767	4	0.962598768336772	1.19864071671301	3.89558232931727	0.389558232931727	0.485714285714286	1	0	gcggcgtcagcgaccacagcGccttcctgtttgtcagaggt	13	13	2	1	novel		TCGA-OR-A5JT-01A-11D-A29I-10	TCGA-OR-A5JT-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac406c92-67af-4d6c-a981-610bd6c674bd	1795e496-6515-464d-9d01-7d391fc0a20e	.	MYOM2-95	NM_003970	exon10	c.G1102T	p.A368S	CACAGCGCCTTCC	.	89	4	76	0	.	0	0	0	0	0	T	2021562	G	T	2021562	3	4	21	1	0	0	0	0	1	0	0	0	10120	1087	38	2	1136	2	MYOM2	8	2021562	Missense_Mutation	SNP	G	TCGA-OR-A5JT-01A-11D-A29I-10	372093	2021562	144342460	34	3732										
BHLHE22	27319	hgsc.bcm.edu	37	chr8	65493532	65493532	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0465116279069767	4	0.962598768336772	1.19864071671301	3.89558232931727	0.389558232931727	0.485714285714286	1	0	gtcctcctcctcgtcgccccTgggctgcttcgagccggctg	12	18	0	0	rs62519835		TCGA-OR-A5JT-01A-11D-A29I-10	TCGA-OR-A5JT-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac406c92-67af-4d6c-a981-610bd6c674bd	1795e496-6515-464d-9d01-7d391fc0a20e	.	BHLHE22-90	NM_152414	exon1	c.T185A	p.L62Q	CGCCCCTGGGCTG	.	24	11	0	0	T|0.935;A|0.065	0	0	0	0	0	A	65493532	T	A	65493532	3	1	21	1	0	0	0	0	1	0	0	0	1422	1580	55	5	187	5	BHLHE22	8	65493532	Missense_Mutation	SNP	T	TCGA-OR-A5JT-01A-11D-A29I-10	63471970	65493532	80870490	35	3733										
CSPP1	79848	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr8	68084742	68084742	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0465116279069767	4	0.962598768336772	1.19864071671301	3.89558232931727	0.389558232931727	0.485714285714286	1	0	agtcccctaagggcttagacGctgccacttttcagaatgtt	9	11	1	2	novel		TCGA-OR-A5JT-01A-11D-A29I-10	TCGA-OR-A5JT-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac406c92-67af-4d6c-a981-610bd6c674bd	1795e496-6515-464d-9d01-7d391fc0a20e	.	CSPP1-138	NM_024790	exon23	c.G2905T	p.A969S	TTAGACGCTGCCA	.	80	6	45	0	.	4	4	0	0	0	T	68084742	G	T	68084742	3	4	21	1	0	0	0	0	1	0	0	0	3968	1087	38	2	3108	2	CSPP1	8	68084742	Missense_Mutation	SNP	G	TCGA-OR-A5JT-01A-11D-A29I-10	2591210	68084742	78279280	36	3734										
TMEM74	157753	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr8	109796609	109796609	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0465116279069767	4	0.962598768336772	1.19864071671301	3.89558232931727	0.389558232931727	0.485714285714286	1	0	acaggatgacgccccccagcGtgaggaggcagagccccgca	14	15	0	3	novel		TCGA-OR-A5JT-01A-11D-A29I-10	TCGA-OR-A5JT-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac406c92-67af-4d6c-a981-610bd6c674bd	1795e496-6515-464d-9d01-7d391fc0a20e	.	TMEM74-228	NM_153015	exon2	c.C719T	p.T240M	CCCAGCGTGAGGA	.	114	31	103	0	.	0	0	0	0	0	A	109796609	G	A	109796609	3	1	21	1	0	0	0	0	1	0	0	0	16239	1145	40	1	202	1	TMEM74	8	109796609	Missense_Mutation	SNP	G	TCGA-OR-A5JT-01A-11D-A29I-10	41711867	109796609	36567413	37	3735										
MAL2	114569	hgsc.bcm.edu	37	chr8	120220776	120220776	+	Splice_Site	DEL	G	G	-													0.0465116279069767	4	0.962598768336772	1.19864071671301	3.89558232931727	0.389558232931727	0.485714285714286	1	0	cgtgtccttcccgccgccccGgggtcaccctgcccgccggc					novel		TCGA-OR-A5JT-01A-11D-A29I-10	TCGA-OR-A5JT-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac406c92-67af-4d6c-a981-610bd6c674bd	1795e496-6515-464d-9d01-7d391fc0a20e	.	.	NM_052886	exon1	c.64+1G>-	.	CGCCCCGGGGTCA	.	14	13	0	0	.	0	0	0	0	0	-	120220776	G	-	120220776	8	5	21	1	0	1	0	1	0	0	1	0	9228	1116	39	0	67	0	MAL2	8	120220776	Splice_Site	DEL	G	TCGA-OR-A5JT-01A-11D-A29I-10	10424167	120220776	26143246	38	3736										
ZNF696	79943	hgsc.bcm.edu	37	chr8	144378868	144378868	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0465116279069767	4	0.962598768336772	1.19864071671301	3.89558232931727	0.389558232931727	0.485714285714286	1	0	ggcttcttccggcaccagcgActccacacgggcgagaagcc	12	16	1	1	rs7386259	byfrequency	TCGA-OR-A5JT-01A-11D-A29I-10	TCGA-OR-A5JT-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac406c92-67af-4d6c-a981-610bd6c674bd	1795e496-6515-464d-9d01-7d391fc0a20e	.	ZNF696-90	NM_030895	exon3	c.A1023G	p.R341R	CCAGCGACTCCAC	.	14	5	2	0	A|0.118;G|0.882	6	4	2	0	0	G	144378868	A	G	144378868	2	3	21	1	0	0	0	0	0	0	0	1	18136	262	10	4		4	ZNF696	8	144378868	Silent	SNP	A	TCGA-OR-A5JT-01A-11D-A29I-10	24158092	144378868	1985154	39	3737										
SCRIB	23513	hgsc.bcm.edu	37	chr8	144874554	144874554	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0465116279069767	4	0.962598768336772	1.19864071671301	3.89558232931727	0.389558232931727	0.485714285714286	1	0	ggggcgccacctcccaggggTgggggggacgccgggctctg	21	13	1	0	rs6991873		TCGA-OR-A5JT-01A-11D-A29I-10	TCGA-OR-A5JT-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac406c92-67af-4d6c-a981-610bd6c674bd	1795e496-6515-464d-9d01-7d391fc0a20e	.	SCRIB-228	NM_015356	exon32	c.A4350G	p.P1450P	CAGGGGTGGGGGG	.	7	7	0	0	T|0.010;C|0.990	36	0	36	0	0	C	144874554	T	C	144874554	2	2	21	1	0	0	0	0	0	0	0	1	13972	1683	59	4		4	SCRIB	8	144874554	Silent	SNP	T	TCGA-OR-A5JT-01A-11D-A29I-10	495686	144874554	1489468	40	3738										
EPPK1	83481	hgsc.bcm.edu;broad.mit.edu	37	chr8	144940732	144940732	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0465116279069767	4	0.962598768336772	1.19864071671301	3.89558232931727	0.389558232931727	0.485714285714286	1	0	ggctggtccttggcgggcacCaggacgcccgcgatgcagct	16	14	0	0	novel		TCGA-OR-A5JT-01A-11D-A29I-10	TCGA-OR-A5JT-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac406c92-67af-4d6c-a981-610bd6c674bd	1795e496-6515-464d-9d01-7d391fc0a20e	.	EPPK1-25	NM_031308	exon1	c.G6690A	p.L2230L	GGGCACCAGGACG	.	88	5	36	0	.	0	0	0	0	0	T	144940732	C	T	144940732	2	4	21	1	0	0	0	0	0	0	0	1	5203	581	21	3		3	EPPK1	8	144940732	Silent	SNP	C	TCGA-OR-A5JT-01A-11D-A29I-10	66178	144940732	1423290	41	3739										
TAF1L	138474	broad.mit.edu	37	chr9	32632961	32632961	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0465116279069767	4	0.962598768336772	1.19864071671301	3.89558232931727	0.389558232931727	0.485714285714286	1	0	gtttgaatccatccctgtgcGtttgaagtcagcgcagagct	11	10	1	3	novel		TCGA-OR-A5JT-01A-11D-A29I-10	TCGA-OR-A5JT-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac406c92-67af-4d6c-a981-610bd6c674bd	1795e496-6515-464d-9d01-7d391fc0a20e	.	TAF1L-870	NM_153809	exon1	c.C2617T	p.R873C	CTGTGCGTTTGAA	.	121	5	259	0	.	0	0	0	0	0	A	32632961	G	A	32632961	3	1	21	1	0	0	0	0	1	0	0	0	15560	1145	40	1	2867	1	TAF1L	9	32632961	Missense_Mutation	SNP	G	TCGA-OR-A5JT-01A-11D-A29I-10		32632961	108580470	42	3740										
PNPLA7	375775	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr9	140356481	140356481	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0465116279069767	4	0.962598768336772	1.19864071671301	3.89558232931727	0.389558232931727	0.485714285714286	1	0	aaacaccgtgcgcccgtgctGgtagcccacttcctgtgcac	10	16	0	0	novel		TCGA-OR-A5JT-01A-11D-A29I-10	TCGA-OR-A5JT-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac406c92-67af-4d6c-a981-610bd6c674bd	1795e496-6515-464d-9d01-7d391fc0a20e	.	PNPLA7-91	NM_001098537	exon32	c.C3658A	p.Q1220K	CGTGCTGGTAGCC	.	41	4	27	0	.	0	0	0	0	0	T	140356481	G	T	140356481	3	4	21	1	0	0	0	0	1	0	0	0	12199	1357	47	3	386	3	PNPLA7	9	140356481	Missense_Mutation	SNP	G	TCGA-OR-A5JT-01A-11D-A29I-10	107723520	140356481	856950	43	3741										
ADARB2	105	hgsc.bcm.edu	37	chr10	1405402	1405402	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0465116279069767	4	0.962598768336772	1.19864071671301	3.89558232931727	0.389558232931727	0.485714285714286	1	0	gaagctccgcgcgcgccgctCggccggttctgccagacaca	13	17	1	1	rs191180422		TCGA-OR-A5JT-01A-11D-A29I-10	TCGA-OR-A5JT-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac406c92-67af-4d6c-a981-610bd6c674bd	1795e496-6515-464d-9d01-7d391fc0a20e	.	ADARB2-153	NM_018702	exon3	c.G898A	p.E300K	GCCGCTCGGCCGG	.	6	4	1	0	.	0	0	0	0	0	T	1405402	C	T	1405402	3	4	21	1	0	0	0	0	1	0	0	0	283	893	31	1	1353	1	ADARB2	10	1405402	Missense_Mutation	SNP	C	TCGA-OR-A5JT-01A-11D-A29I-10		1405402	134129345	44	3742										
GPRIN2	9721	hgsc.bcm.edu	37	chr10	47000217	47000217	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0465116279069767	4	0.962598768336772	1.19864071671301	3.89558232931727	0.389558232931727	0.485714285714286	1	0	tgtcatgcagtccctgcggcGccccagctgctgcggctgct	13	16	1	0	rs72780221	byfrequency	TCGA-OR-A5JT-01A-11D-A29I-10	TCGA-OR-A5JT-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac406c92-67af-4d6c-a981-610bd6c674bd	1795e496-6515-464d-9d01-7d391fc0a20e	.	GPRIN2-90	NM_014696	exon3	c.G1337A	p.R446H	TGCGGCGCCCCAG	.	32	15	1	0	G|0.901;A|0.099	0	0	0	0	0	A	47000217	G	A	47000217	3	1	21	1	0	0	0	0	1	0	0	0	6751	1087	38	1	1339	1	GPRIN2	10	47000217	Missense_Mutation	SNP	G	TCGA-OR-A5JT-01A-11D-A29I-10	45594815	47000217	88534530	45	3743										
NFKB2	4791	hgsc.bcm.edu	37	chr10	104159196	104159196	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0465116279069767	4	0.962598768336772	1.19864071671301	3.89558232931727	0.389558232931727	0.485714285714286	1	0	ggggaggaagccgcggagccAagcgccccctccaggacccc	15	17	0	0	rs4919633	byfrequency	TCGA-OR-A5JT-01A-11D-A29I-10	TCGA-OR-A5JT-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac406c92-67af-4d6c-a981-610bd6c674bd	1795e496-6515-464d-9d01-7d391fc0a20e	.	NFKB2-522	NM_001077494	exon13	c.A1269G	p.P423P	GGAGCCAAGCGCC	.	4	4	0	0	A|0.009;G|0.991	11	0	11	0	0	G	104159196	A	G	104159196	2	3	21	1	0	0	0	0	0	0	0	1	10405	117	5	4		4	NFKB2	10	104159196	Silent	SNP	A	TCGA-OR-A5JT-01A-11D-A29I-10	57158979	104159196	31375551	46	3744										
SLC18A2	6571	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr10	119003690	119003690	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0465116279069767	4	0.962598768336772	1.19864071671301	3.89558232931727	0.389558232931727	0.485714285714286	1	0	cagcacatggtgaccaacgcGtccgctgttccttccgactg	10	15	0	1	novel		TCGA-OR-A5JT-01A-11D-A29I-10	TCGA-OR-A5JT-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac406c92-67af-4d6c-a981-610bd6c674bd	1795e496-6515-464d-9d01-7d391fc0a20e	.	SLC18A2-90	NM_003054	exon3	c.G330A	p.A110A	CAACGCGTCCGCT	.	121	42	113	0	.	0	0	0	0	0	A	119003690	G	A	119003690	2	1	21	1	0	0	0	0	0	0	0	1	14461	1132	40	1		1	SLC18A2	10	119003690	Silent	SNP	G	TCGA-OR-A5JT-01A-11D-A29I-10	14844494	119003690	16531057	47	3745										
KNDC1	85442	hgsc.bcm.edu	37	chr10	135012429	135012430	+	Missense_Mutation	DNP	TT	TT	AC													0.0465116279069767	4	0.962598768336772	1.19864071671301	3.89558232931727	0.389558232931727	0.485714285714286	1	0	tgagccgatcccacctggagTtgcttccgggggcctcaggc					novel		TCGA-OR-A5JT-01A-11D-A29I-10	TCGA-OR-A5JT-10A-01D-A29L-10	TT	TT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac406c92-67af-4d6c-a981-610bd6c674bd	1795e496-6515-464d-9d01-7d391fc0a20e	.	KNDC1-229	NM_152643	exon14	c.T2418C	p.V806D	TGGAGTTGCTTCC	.	4	0	0	0	T|0.470;C|0.530	0	0	0	0	0	AC	135012430	TT	AC	135012429	3	1	21	1	0	0	0	0	1	0	0	0	8447	1725	60	5	2471	5	KNDC1	10	135012429	Missense_Mutation	DNP	TT	TCGA-OR-A5JT-01A-11D-A29I-10	16008739	135012429	522318	48	3746										
OR5L1	219437	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	55579239	55579239	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0465116279069767	4	0.962598768336772	1.19864071671301	3.89558232931727	0.389558232931727	0.485714285714286	1	0	tccttcctagggtgcatggtGcaattctacttgttttgcac	9	10	1	0	novel		TCGA-OR-A5JT-01A-11D-A29I-10	TCGA-OR-A5JT-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac406c92-67af-4d6c-a981-610bd6c674bd	1795e496-6515-464d-9d01-7d391fc0a20e	.	OR5L1-73	NM_001004738	exon1	c.G297A	p.V99V	CATGGTGCAATTC	.	168	96	135	1	.	0	0	0	0	0	A	55579239	G	A	55579239	2	1	21	1	0	0	0	0	0	0	0	1	11199	1306	46	3		3	OR5L1	11	55579239	Silent	SNP	G	TCGA-OR-A5JT-01A-11D-A29I-10		55579239	79427277	49	3747										
ARAP1	116985	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	72412758	72412758	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0465116279069767	4	0.962598768336772	1.19864071671301	3.89558232931727	0.389558232931727	0.485714285714286	1	0	gtcttgtagaggaagccactGtggctcacggtcggcaggac	15	10	2	1	novel		TCGA-OR-A5JT-01A-11D-A29I-10	TCGA-OR-A5JT-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac406c92-67af-4d6c-a981-610bd6c674bd	1795e496-6515-464d-9d01-7d391fc0a20e	.	ARAP1-91	NM_001040118	exon16	c.C2238T	p.H746H	GCCACTGTGGCTC	.	73	28	76	0	.	23	12	11	0	0	A	72412758	G	A	72412758	2	1	21	1	0	0	0	0	0	0	0	1	838	1368	48	3		3	ARAP1	11	72412758	Silent	SNP	G	TCGA-OR-A5JT-01A-11D-A29I-10	16833519	72412758	62593758	50	3748										
PANX3	116337	broad.mit.edu	37	chr11	124489781	124489781	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0465116279069767	4	0.962598768336772	1.19864071671301	3.89558232931727	0.389558232931727	0.485714285714286	1	0	ctttattggctggcttagaaCcctcaaaacccaaacacctc	5	14	1	1	rs199566360	alternate_allele	TCGA-OR-A5JT-01A-11D-A29I-10	TCGA-OR-A5JT-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac406c92-67af-4d6c-a981-610bd6c674bd	1795e496-6515-464d-9d01-7d391fc0a20e	.	PANX3-68	NM_052959	exon4	c.C1129A	p.P377T	TTAGAACCCTCAA	.	119	9	149	3	C|0.999;T|0.001	0	0	0	0	0	A	124489781	C	A	124489781	3	1	21	1	0	0	0	0	1	0	0	0	11451	507	18	3	1143	3	PANX3	11	124489781	Missense_Mutation	SNP	C	TCGA-OR-A5JT-01A-11D-A29I-10	52077023	124489781	10516735	51	3749										
RPUSD4	84881	bcgsc.ca	37	chr11	126081403	126081403	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0465116279069767	4	0.962598768336772	1.19864071671301	3.89558232931727	0.389558232931727	0.485714285714286	1	0	ggagcttctccgctaatctcTgggcatttatggccgtagag	12	10	2	1	rs2282580	byfrequency	TCGA-OR-A5JT-01A-11D-A29I-10	TCGA-OR-A5JT-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac406c92-67af-4d6c-a981-610bd6c674bd	1795e496-6515-464d-9d01-7d391fc0a20e	.	RPUSD4-153	NM_001144827	exon1	c.A131G	p.Q44R	AATCTCTGGGCAT	.	80	6	102	0	T|0.608;C|0.392	3	3	0	0	0	C	126081403	T	C	126081403	3	2	21	1	0	0	0	0	1	0	0	0	13704	1580	55	4	1030	4	RPUSD4	11	126081403	Missense_Mutation	SNP	T	TCGA-OR-A5JT-01A-11D-A29I-10	1591622	126081403	8925113	52	3750										
KCNA1	3736	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	5020979	5020979	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0465116279069767	4	0.962598768336772	1.19864071671301	3.89558232931727	0.389558232931727	0.485714285714286	1	0	gaggaggagcgccctctgccCgagaaggagtaccagcgcca	15	13	1	1	novel		TCGA-OR-A5JT-01A-11D-A29I-10	TCGA-OR-A5JT-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac406c92-67af-4d6c-a981-610bd6c674bd	1795e496-6515-464d-9d01-7d391fc0a20e	.	KCNA1-228	NM_000217	exon2	c.C435A	p.P145P	TCTGCCCGAGAAG	.	117	45	94	1	.	0	0	0	0	0	A	5020979	C	A	5020979	2	1	21	1	0	0	0	0	0	0	0	1	8022	639	23	2		2	KCNA1	12	5020979	Silent	SNP	C	TCGA-OR-A5JT-01A-11D-A29I-10		5020979	128830916	53	3751										
ATN1	1822	ucsc.edu	37	chr12	7045912	7045912	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0465116279069767	4	0.962598768336772	1.19864071671301	3.89558232931727	0.389558232931727	0.485714285714286	1	0	cagcagcagcagcagcagcaGcagcagcagcagcagcagca	13	14	0	0	rs144280633	byfrequency	TCGA-OR-A5JT-01A-11D-A29I-10	TCGA-OR-A5JT-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac406c92-67af-4d6c-a981-610bd6c674bd	1795e496-6515-464d-9d01-7d391fc0a20e	.	ATN1-139	NM_001007026	exon5	c.G1482A	p.Q494Q	GCAGCAGCAGCAG	.	111	25	58	0	G|0.972;A|0.028	3117	3037	76	2	2	A	7045912	G	A	7045912	2	1	21	1	0	0	0	0	0	0	0	1	1112	962	34	3		3	ATN1	12	7045912	Silent	SNP	G	TCGA-OR-A5JT-01A-11D-A29I-10	2024933	7045912	126805983	54	3752										
GNS	2799	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	65146525	65146525	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0465116279069767	4	0.962598768336772	1.19864071671301	3.89558232931727	0.389558232931727	0.485714285714286	1	0	tccgatgagagctttggtttTctttagcggtgtctgtaaaa	11	6	2	1	novel		TCGA-OR-A5JT-01A-11D-A29I-10	TCGA-OR-A5JT-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac406c92-67af-4d6c-a981-610bd6c674bd	1795e496-6515-464d-9d01-7d391fc0a20e	.	GNS-514	NM_002076	exon2	c.A205G	p.K69E	TGGTTTTCTTTAG	.	49	9	37	0	.	0	0	0	0	0	C	65146525	T	C	65146525	3	2	21	1	0	0	0	0	1	0	0	0	6570	1792	62	4	1505	4	GNS	12	65146525	Missense_Mutation	SNP	T	TCGA-OR-A5JT-01A-11D-A29I-10	58100613	65146525	68705370	55	3753										
DYRK2	8445	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	68051422	68051422	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0465116279069767	4	0.962598768336772	1.19864071671301	3.89558232931727	0.389558232931727	0.485714285714286	1	0	gcctacgatcacaaagtccaCcagcacgtggccctaaagat	8	14	1	1	novel		TCGA-OR-A5JT-01A-11D-A29I-10	TCGA-OR-A5JT-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac406c92-67af-4d6c-a981-610bd6c674bd	1795e496-6515-464d-9d01-7d391fc0a20e	.	DYRK2-861	NM_006482	exon3	c.C735T	p.H245H	AGTCCACCAGCAC	.	81	19	55	0	.	14	10	4	0	0	T	68051422	C	T	68051422	2	4	21	1	0	0	0	0	0	0	0	1	4867	506	18	3		3	DYRK2	12	68051422	Silent	SNP	C	TCGA-OR-A5JT-01A-11D-A29I-10	2904897	68051422	65800473	56	3754										
SSH1	54434	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	109182933	109182933	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0465116279069767	4	0.962598768336772	1.19864071671301	3.89558232931727	0.389558232931727	0.485714285714286	1	0	tcgctccctggaggcctcagGagccccgctggctgtagggt	15	14	1	0	novel		TCGA-OR-A5JT-01A-11D-A29I-10	TCGA-OR-A5JT-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac406c92-67af-4d6c-a981-610bd6c674bd	1795e496-6515-464d-9d01-7d391fc0a20e	.	SSH1-94	NM_018984	exon15	c.C1981T	p.P661S	CCTCAGGAGCCCC	.	97	49	79	0	.	10	6	4	0	0	A	109182933	G	A	109182933	3	1	21	1	0	0	0	0	1	0	0	0	15221	1174	41	3	1172	3	SSH1	12	109182933	Missense_Mutation	SNP	G	TCGA-OR-A5JT-01A-11D-A29I-10	41131511	109182933	24668962	57	3755										
ACACB	32	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr12	109616998	109616999	+	Frame_Shift_Del	DEL	TC	TC	-													0.0465116279069767	4	0.962598768336772	1.19864071671301	3.89558232931727	0.389558232931727	0.485714285714286	1	0	accagtatgggaatgctgtgTctctgtttggtcgcgactgc					novel		TCGA-OR-A5JT-01A-11D-A29I-10	TCGA-OR-A5JT-10A-01D-A29L-10	TC	TC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac406c92-67af-4d6c-a981-610bd6c674bd	1795e496-6515-464d-9d01-7d391fc0a20e	.	ACACB-98	NM_001093	exon9	c.1543_1544del	p.515_515del	GCTGTGTCTCTGT	.	116	26	86	0	.	0	0	0	0	0	-	109616999	TC	-	109616998	7	5	21	1	0	1	0	1	0	0	0	0	107	1667	58	0	1577	0	ACACB	12	109616998	Frame_Shift_Del	DEL	TC	TCGA-OR-A5JT-01A-11D-A29I-10	434065	109616998	24234897	58	3756										
IL31	386653	broad.mit.edu;bcgsc.ca	37	chr12	122657198	122657198	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0465116279069767	4	0.962598768336772	1.19864071671301	3.89558232931727	0.389558232931727	0.485714285714286	1	0	gagatatgcccggatggctgGgctgtggatgttgtttggcg	18	6	0	1	rs146057190	byfrequency;alternate_allele	TCGA-OR-A5JT-01A-11D-A29I-10	TCGA-OR-A5JT-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac406c92-67af-4d6c-a981-610bd6c674bd	1795e496-6515-464d-9d01-7d391fc0a20e	.	IL31-514	NM_001014336	exon3	c.C256T	p.P86S	TGGCTGGGCTGTG	.	264	11	147	0	G|0.999;T|0.001	0	0	0	0	0	A	122657198	G	A	122657198	3	1	21	1	0	0	0	0	1	0	0	0	7711	1232	43	3	242	3	IL31	12	122657198	Missense_Mutation	SNP	G	TCGA-OR-A5JT-01A-11D-A29I-10	13040200	122657198	11194697	59	3757										
POMP	51371	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr13	29242664	29242664	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0465116279069767	4	0.962598768336772	1.19864071671301	3.89558232931727	0.389558232931727	0.485714285714286	1	0	cactgagaaacattcagggtCtatttgctccgctaaaatta	7	9	2	1	novel		TCGA-OR-A5JT-01A-11D-A29I-10	TCGA-OR-A5JT-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac406c92-67af-4d6c-a981-610bd6c674bd	1795e496-6515-464d-9d01-7d391fc0a20e	.	POMP-90	NM_015932	exon4	c.C217G	p.L73V	CAGGGTCTATTTG	.	70	37	93	0	.	194	105	89	0	0	G	29242664	C	G	29242664	3	3	21	1	0	0	0	0	1	0	0	0	12273	912	32	3	231	3	POMP	13	29242664	Missense_Mutation	SNP	C	TCGA-OR-A5JT-01A-11D-A29I-10		29242664	85927214	60	3758										
ING1	3621	hgsc.bcm.edu	37	chr13	111368316	111368316	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0465116279069767	4	0.962598768336772	1.19864071671301	3.89558232931727	0.389558232931727	0.485714285714286	1	0	gacagtttcaggccgcatctCtgctgacccgagggtggggc	15	12	2	1	rs9555726	byfrequency	TCGA-OR-A5JT-01A-11D-A29I-10	TCGA-OR-A5JT-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac406c92-67af-4d6c-a981-610bd6c674bd	1795e496-6515-464d-9d01-7d391fc0a20e	.	ING1-515	NM_005537	exon1	c.C526T	p.L176L	GCATCTCTGCTGA	.	7	7	0	0	C|0.372;T|0.628	2	1	1	0	0	T	111368316	C	T	111368316	2	4	21	1	0	0	0	0	0	0	0	1	7756	912	32	3		3	ING1	13	111368316	Silent	SNP	C	TCGA-OR-A5JT-01A-11D-A29I-10	82125652	111368316	3801562	61	3759										
DCUN1D2	55208	bcgsc.ca	37	chr13	114112384	114112384	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0465116279069767	4	0.962598768336772	1.19864071671301	3.89558232931727	0.389558232931727	0.485714285714286	1	0	cacctgtgactactggccgtGcatattctacaaaatcatct	6	12	3	1	novel		TCGA-OR-A5JT-01A-11D-A29I-10	TCGA-OR-A5JT-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac406c92-67af-4d6c-a981-610bd6c674bd	1795e496-6515-464d-9d01-7d391fc0a20e	.	DCUN1D2-90	NM_001014283	exon7	c.C740A	p.A247E	GGCCGTGCATATT	.	82	5	84	0	.	10	10	0	0	0	T	114112384	G	T	114112384	3	4	21	1	0	0	0	0	1	0	0	0	4320	1319	46	3	43	3	DCUN1D2	13	114112384	Missense_Mutation	SNP	G	TCGA-OR-A5JT-01A-11D-A29I-10	2744068	114112384	1057494	62	3760										
FOXA1	3169	hgsc.bcm.edu	37	chr14	38061547	38061547	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0465116279069767	4	0.962598768336772	1.19864071671301	3.89558232931727	0.389558232931727	0.485714285714286	1	0	gcccgcgcggctgcggcccaGgttggacggcgcgtacgcca	17	16	0	0	rs112819884	byfrequency	TCGA-OR-A5JT-01A-11D-A29I-10	TCGA-OR-A5JT-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac406c92-67af-4d6c-a981-610bd6c674bd	1795e496-6515-464d-9d01-7d391fc0a20e	.	FOXA1-226	NM_004496	exon2	c.C442G	p.L148V	GGCCCAGGTTGGA	.	8	8	1	0	G|0.992;C|0.008	0	0	0	0	0	C	38061547	G	C	38061547	3	2	21	1	0	0	0	0	1	0	0	0	6008	991	35	3	980	3	FOXA1	14	38061547	Missense_Mutation	SNP	G	TCGA-OR-A5JT-01A-11D-A29I-10		38061547	69287993	63	3761										
LTK	4058	hgsc.bcm.edu	37	chr15	41803754	41803754	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0465116279069767	4	0.962598768336772	1.19864071671301	3.89558232931727	0.389558232931727	0.485714285714286	1	0	ctccggccgccaccagcaacGgttccagctcgccagcgcgc	11	20	0	0	rs55739813	byfrequency	TCGA-OR-A5JT-01A-11D-A29I-10	TCGA-OR-A5JT-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac406c92-67af-4d6c-a981-610bd6c674bd	1795e496-6515-464d-9d01-7d391fc0a20e	.	LTK-1377	NM_001135685	exon6	c.C680T	p.P227L	AGCAACGGTTCCA	.	8	8	0	0	G|0.962;A|0.038	0	0	0	0	0	A	41803754	G	A	41803754	3	1	21	1	0	0	0	0	1	0	0	0	9107	1116	39	1	1974	1	LTK	15	41803754	Missense_Mutation	SNP	G	TCGA-OR-A5JT-01A-11D-A29I-10		41803754	60727638	64	3762										
LACTB	114294	hgsc.bcm.edu	37	chr15	63414083	63414083	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0465116279069767	4	0.962598768336772	1.19864071671301	3.89558232931727	0.389558232931727	0.485714285714286	1	0	gagacgccatgtaccggctcAtgtcagcagtgactgcccgg	13	13	2	2	rs34317102	byfrequency	TCGA-OR-A5JT-01A-11D-A29I-10	TCGA-OR-A5JT-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac406c92-67af-4d6c-a981-610bd6c674bd	1795e496-6515-464d-9d01-7d391fc0a20e	.	LACTB-90	NM_171846	exon1	c.A13C	p.M5L	CGGCTCATGTCAG	.	7	7	0	0	A|0.226;C|0.774	3	0	3	0	0	C	63414083	A	C	63414083	3	2	21	1	0	0	0	0	1	0	0	0	8619	217	8	5	15	5	LACTB	15	63414083	Missense_Mutation	SNP	A	TCGA-OR-A5JT-01A-11D-A29I-10	21610329	63414083	39117309	65	3763										
NEO1	4756	ucsc.edu	37	chr15	73428301	73428301	+	Silent	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0465116279069767	4	0.962598768336772	1.19864071671301	3.89558232931727	0.389558232931727	0.485714285714286	1	0	gttactgaggatgatgctggGacttatttttgtatagctga	12	4	0	3	novel		TCGA-OR-A5JT-01A-11D-A29I-10	TCGA-OR-A5JT-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac406c92-67af-4d6c-a981-610bd6c674bd	1795e496-6515-464d-9d01-7d391fc0a20e	.	NEO1-116	NM_001172623	exon5	c.G948T	p.G316G	TGCTGGGACTTAT	.	36	4	36	0	.	1	1	0	0	0	T	73428301	G	T	73428301	2	4	21	1	0	0	0	0	0	0	0	1	10365	1161	41	3		3	NEO1	15	73428301	Silent	SNP	G	TCGA-OR-A5JT-01A-11D-A29I-10	10014218	73428301	29103091	66	3764										
ADAMTS7	11173	bcgsc.ca	37	chr15	79057989	79057989	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0465116279069767	4	0.962598768336772	1.19864071671301	3.89558232931727	0.389558232931727	0.485714285714286	1	0	ccagcccacaccacttgcctCgctccagtttcccgcttgcc	6	21	0	0	rs200769684		TCGA-OR-A5JT-01A-11D-A29I-10	TCGA-OR-A5JT-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac406c92-67af-4d6c-a981-610bd6c674bd	1795e496-6515-464d-9d01-7d391fc0a20e	.	ADAMTS7-226	NM_014272	exon19	c.G4264A	p.E1422K	TTGCCTCGCTCCA	.	81	19	70	6	C|0.999;T|0.001	0	0	0	0	0	T	79057989	C	T	79057989	3	4	21	1	0	0	0	0	1	0	0	0	271	893	31	1	820	1	ADAMTS7	15	79057989	Missense_Mutation	SNP	C	TCGA-OR-A5JT-01A-11D-A29I-10	5629688	79057989	23473403	67	3765										
CACNA1H	8912	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr16	1254107	1254107	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0465116279069767	4	0.962598768336772	1.19864071671301	3.89558232931727	0.389558232931727	0.485714285714286	1	0	acctgtgagctgaagagctgCccgtactgcacccgtgccct	11	15	0	3	novel		TCGA-OR-A5JT-01A-11D-A29I-10	TCGA-OR-A5JT-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac406c92-67af-4d6c-a981-610bd6c674bd	1795e496-6515-464d-9d01-7d391fc0a20e	.	CACNA1H-67	NM_021098	exon10	c.C2100A	p.C700X	GAGCTGCCCGTAC	.	131	64	71	0	.	31	23	8	0	0	A	1254107	C	A	1254107	4	1	21	1	0	0	0	0	0	1	0	0	2551	747	26	3	2134	3	CACNA1H	16	1254107	Nonsense_Mutation	SNP	C	TCGA-OR-A5JT-01A-11D-A29I-10		1254107	89100646	68	3766										
EME2	197342	hgsc.bcm.edu	37	chr16	1823444	1823444	+	Silent	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.0465116279069767	4	0.962598768336772	1.19864071671301	3.89558232931727	0.389558232931727	0.485714285714286	1	0	ctgctgcggccggagcaggtCctgaagcgcctcgcggtgtg	17	13	0	1	rs761065		TCGA-OR-A5JT-01A-11D-A29I-10	TCGA-OR-A5JT-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac406c92-67af-4d6c-a981-610bd6c674bd	1795e496-6515-464d-9d01-7d391fc0a20e	.	EME2-229	NM_001257370	exon1	c.C216G	p.V72V	GCAGGTCCTGAAG	.	11	6	1	0	C|0.615;G|0.385	1	1	0	0	0	G	1823444	C	G	1823444	2	3	21	1	0	0	0	0	0	0	0	1	5102	842	30	3		3	EME2	16	1823444	Silent	SNP	C	TCGA-OR-A5JT-01A-11D-A29I-10	569337	1823444	88531309	69	3767										
ZNF598	90850	hgsc.bcm.edu	37	chr16	2059674	2059674	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0465116279069767	4	0.962598768336772	1.19864071671301	3.89558232931727	0.389558232931727	0.485714285714286	1	0	acagcacgcagctcccgcctTcccgctcaggagctgccgcc	10	20	1	0	rs71384660		TCGA-OR-A5JT-01A-11D-A29I-10	TCGA-OR-A5JT-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac406c92-67af-4d6c-a981-610bd6c674bd	1795e496-6515-464d-9d01-7d391fc0a20e	.	ZNF598-432	NM_178167	exon2	c.A74G	p.E25G	CCGCCTTCCCGCT	.	4	4	0	0	T|0.007;C|0.993	9	0	9	0	0	C	2059674	T	C	2059674	3	2	21	1	0	0	0	0	1	0	0	0	18065	1770	62	4	2689	4	ZNF598	16	2059674	Missense_Mutation	SNP	T	TCGA-OR-A5JT-01A-11D-A29I-10	236230	2059674	88295079	70	3768										
E4F1	1877	broad.mit.edu	37	chr16	2282180	2282180	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0465116279069767	4	0.962598768336772	1.19864071671301	3.89558232931727	0.389558232931727	0.485714285714286	1	0	tgcttctcctaggtggtgggCacatcaaagaggtcatcgtg	13	9	3	1	novel		TCGA-OR-A5JT-01A-11D-A29I-10	TCGA-OR-A5JT-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac406c92-67af-4d6c-a981-610bd6c674bd	1795e496-6515-464d-9d01-7d391fc0a20e	.	E4F1-187	NM_004424	exon4	c.C424A	p.H142N	GGTGGGCACATCA	.	42	5	8	0	.	3	3	0	0	0	A	2282180	C	A	2282180	3	1	21	1	0	0	0	0	1	0	0	0	4885	710	25	3	438	3	E4F1	16	2282180	Missense_Mutation	SNP	C	TCGA-OR-A5JT-01A-11D-A29I-10	222506	2282180	88072573	71	3769										
VASN	114990	hgsc.bcm.edu;broad.mit.edu	37	chr16	4431679	4431679	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0465116279069767	4	0.962598768336772	1.19864071671301	3.89558232931727	0.389558232931727	0.485714285714286	1	0	gccggcctggctgccctgcaGgagctggatgtgagcaacct	15	13	0	1	novel		TCGA-OR-A5JT-01A-11D-A29I-10	TCGA-OR-A5JT-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac406c92-67af-4d6c-a981-610bd6c674bd	1795e496-6515-464d-9d01-7d391fc0a20e	.	VASN-68	NM_138440	exon2	c.G801A	p.Q267Q	CCTGCAGGAGCTG	.	71	16	11	0	.	1	1	0	0	0	A	4431679	G	A	4431679	2	1	21	1	0	0	0	0	0	0	0	1	17165	991	35	3		3	VASN	16	4431679	Silent	SNP	G	TCGA-OR-A5JT-01A-11D-A29I-10	2149499	4431679	85923074	72	3770										
VAT1L	57687	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	77918647	77918647	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0465116279069767	4	0.962598768336772	1.19864071671301	3.89558232931727	0.389558232931727	0.485714285714286	1	0	ggaaaaactcatagggctctAcaaccagaagaagatcaagc	9	9	3	3	novel		TCGA-OR-A5JT-01A-11D-A29I-10	TCGA-OR-A5JT-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac406c92-67af-4d6c-a981-610bd6c674bd	1795e496-6515-464d-9d01-7d391fc0a20e	.	VAT1L-90	NM_020927	exon7	c.A1025T	p.Y342F	GGCTCTACAACCA	.	78	7	70	0	.	105	102	3	0	0	T	77918647	A	T	77918647	3	4	21	1	0	0	0	0	1	0	0	0	17168	391	14	5	1051	5	VAT1L	16	77918647	Missense_Mutation	SNP	A	TCGA-OR-A5JT-01A-11D-A29I-10	73486968	77918647	12436106	73	3771										
ZFPM1	161882	hgsc.bcm.edu	37	chr16	88599697	88599705	+	In_Frame_Del	DEL	AGCCTCTGG	AGCCTCTGG	-													0.0465116279069767	4	0.962598768336772	1.19864071671301	3.89558232931727	0.389558232931727	0.485714285714286	1	0	caacggagaggccagagcggAgcctctggcccagaatggag					novel		TCGA-OR-A5JT-01A-11D-A29I-10	TCGA-OR-A5JT-10A-01D-A29L-10	AGCCTCTGG	AGCCTCTGG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac406c92-67af-4d6c-a981-610bd6c674bd	1795e496-6515-464d-9d01-7d391fc0a20e	.	ZFPM1-90	NM_153813	exon10	c.1331_1339del	p.444_447del	GAGCGGAGCCTCT	.	17	0	1	0	.	0	0	0	0	0	-	88599705	AGCCTCTGG	-	88599697	7	5	21	1	0	1	0	1	0	0	0	0	17694	304	11	0	1369	0	ZFPM1	16	88599697	In_Frame_Del	DEL	AGCCTCTGG	TCGA-OR-A5JT-01A-11D-A29I-10	10681050	88599697	1755056	74	3772										
KDM6B	23135	broad.mit.edu	37	chr17	7750177	7750178	+	In_Frame_Ins	INS	-	-	ACCACC													0.0465116279069767	4	0.962598768336772	1.19864071671301	3.89558232931727	0.389558232931727	0.485714285714286	1	0	ccactgcctccaccaccattINSaccaccaccaccaccaccac					novel		TCGA-OR-A5JT-01A-11D-A29I-10	TCGA-OR-A5JT-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac406c92-67af-4d6c-a981-610bd6c674bd	1795e496-6515-464d-9d01-7d391fc0a20e	.	KDM6B-205	NM_001080424	exon9	c.752_753insACCACC	p.L251delinsLPP	CACCATTACCACC	.	8	2	11	0	.	0	0	0	0	0	ACCACC	7750178	-	ACCACC	7750177	7	5	21	1	0	1	1	0	0	0	0	0	8159	1764	61	0	774	0	KDM6B	17	7750177	In_Frame_Ins	INS	-	TCGA-OR-A5JT-01A-11D-A29I-10		7750177	73445033	75	3773										
SARM1	23098	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	26723260	26723260	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0465116279069767	4	0.962598768336772	1.19864071671301	3.89558232931727	0.389558232931727	0.485714285714286	1	0	tcccgggactcatctgcaggCtctgacaccagtttggaggg	13	12	3	1	novel		TCGA-OR-A5JT-01A-11D-A29I-10	TCGA-OR-A5JT-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac406c92-67af-4d6c-a981-610bd6c674bd	1795e496-6515-464d-9d01-7d391fc0a20e	.	.	NM_015077	exon10	c.C2127A	p.G709G	TGCAGGCTCTGAC	.	41	18	61	0	.	6	3	3	0	0	A	26723260	C	A	26723260	2	1	21	1	0	0	0	0	0	0	0	1	13877	784	28	3		3	SARM1	17	26723260	Silent	SNP	C	TCGA-OR-A5JT-01A-11D-A29I-10	18973083	26723260	54471950	76	3774										
GPR179	440435	broad.mit.edu	37	chr17	36483472	36483472	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0465116279069767	4	0.962598768336772	1.19864071671301	3.89558232931727	0.389558232931727	0.485714285714286	1	0	ccatgggcacacgtcagcggCcctgcccccagtgctgacca	11	18	1	1	novel		TCGA-OR-A5JT-01A-11D-A29I-10	TCGA-OR-A5JT-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac406c92-67af-4d6c-a981-610bd6c674bd	1795e496-6515-464d-9d01-7d391fc0a20e	.	GPR179-93	NM_001004334	exon11	c.G5980T	p.A1994S	CAGCGGCCCTGCC	.	61	6	80	1	.	0	0	0	0	0	A	36483472	C	A	36483472	3	1	21	1	0	0	0	0	1	0	0	0	6694	739	26	3	1127	3	GPR179	17	36483472	Missense_Mutation	SNP	C	TCGA-OR-A5JT-01A-11D-A29I-10	9760212	36483472	44711738	77	3775										
EMILIN2	84034	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr18	2892375	2892375	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0465116279069767	4	0.962598768336772	1.19864071671301	3.89558232931727	0.389558232931727	0.485714285714286	1	0	atgaacggaacgctcaggtcGcattccagagacatttctgg	11	10	2	2	novel		TCGA-OR-A5JT-01A-11D-A29I-10	TCGA-OR-A5JT-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac406c92-67af-4d6c-a981-610bd6c674bd	1795e496-6515-464d-9d01-7d391fc0a20e	.	EMILIN2-93	NM_032048	exon4	c.G2250A	p.S750S	CAGGTCGCATTCC	.	15	9	29	0	.	0	0	0	0	0	A	2892375	G	A	2892375	2	1	21	1	0	0	0	0	0	0	0	1	5107	1074	38	1		1	EMILIN2	18	2892375	Silent	SNP	G	TCGA-OR-A5JT-01A-11D-A29I-10		2892375	75184873	78	3776										
RAVER1	125950	broad.mit.edu	37	chr19	10433923	10433923	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0465116279069767	4	0.962598768336772	1.19864071671301	3.89558232931727	0.389558232931727	0.485714285714286	1	0	ctgcaggatgttgggctcggGgaggagtcccttcccccgat	15	12	0	0	novel		TCGA-OR-A5JT-01A-11D-A29I-10	TCGA-OR-A5JT-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac406c92-67af-4d6c-a981-610bd6c674bd	1795e496-6515-464d-9d01-7d391fc0a20e	.	RAVER1-91	NM_133452	exon5	c.C1027T	p.P343S	GCTCGGGGAGGAG	.	108	5	111	0	.	27	27	0	0	0	A	10433923	G	A	10433923	3	1	21	1	0	0	0	0	1	0	0	0	13129	1232	43	3	1279	3	RAVER1	19	10433923	Missense_Mutation	SNP	G	TCGA-OR-A5JT-01A-11D-A29I-10		10433923	48695060	79	3777										
PRKACA	5566	hgsc.bcm.edu	37	chr19	14204529	14204530	+	In_Frame_Ins	INS	-	-	CTTGGTGAGATCTACCTGCAGGAGGTTCCGCAGCAGGTC													0.0465116279069767	4	0.962598768336772	1.19864071671301	3.89558232931727	0.389558232931727	0.485714285714286	1	0	ttcttgaggttcccaaagcgINScttggtgagatctacctgca					novel		TCGA-OR-A5JT-01A-11D-A29I-10	TCGA-OR-A5JT-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac406c92-67af-4d6c-a981-610bd6c674bd	1795e496-6515-464d-9d01-7d391fc0a20e	.	PRKACA-978	NM_002730	exon9	c.841_842insGACCTGCTGCGGAACCTCCTGCAGGTAGATCTCACCAAG	p.R281delinsDLLRNLLQVDLTKR	CAAAGCGCTTGGT	.	127	0	170	0	.	0	0	0	0	0	CTTGGTGAGATCTACCTGCAGGAGGTTCCGCAGCAGGTC	14204530	-	CTTGGTGAGATCTACCTGCAGGAGGTTCCGCAGCAGGTC	14204529	7	5	21	1	0	1	1	0	0	0	0	0	12529	1087	38	0	222	0	PRKACA	19	14204529	In_Frame_Ins	INS	-	TCGA-OR-A5JT-01A-11D-A29I-10	3770606	14204529	44924454	80	3778										
EMR2	30817	bcgsc.ca	37	chr19	14877820	14877820	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0465116279069767	4	0.962598768336772	1.19864071671301	3.89558232931727	0.389558232931727	0.485714285714286	1	0	cttcgggtcctcaggtttgaGcttgaagccaggcaggcact	13	11	1	2	rs74182239		TCGA-OR-A5JT-01A-11D-A29I-10	TCGA-OR-A5JT-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac406c92-67af-4d6c-a981-610bd6c674bd	1795e496-6515-464d-9d01-7d391fc0a20e	.	EMR2-524	NM_001271052	exon5	c.C457T	p.L153F	GTTTGAGCTTGAA	.	28	18	107	9	A|1.000;|0.000	0	0	0	0	0	A	14877820	G	A	14877820	3	1	21	1	0	0	0	0	1	0	0	0	5118	971	34	3	2078	3	EMR2	19	14877820	Missense_Mutation	SNP	G	TCGA-OR-A5JT-01A-11D-A29I-10	673291	14877820	44251163	81	3779										
MAP1S	55201	hgsc.bcm.edu	37	chr19	17837425	17837425	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0465116279069767	4	0.962598768336772	1.19864071671301	3.89558232931727	0.389558232931727	0.485714285714286	1	0	cgccgagcgcacgctggcctCtgtgtgcgccctgctggtgt	15	15	1	0	rs17710707	byfrequency	TCGA-OR-A5JT-01A-11D-A29I-10	TCGA-OR-A5JT-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac406c92-67af-4d6c-a981-610bd6c674bd	1795e496-6515-464d-9d01-7d391fc0a20e	.	MAP1S-90	NM_018174	exon5	c.C1232G	p.S411C	TGGCCTCTGTGTG	.	15	14	0	0	C|0.883;G|0.117	10	0	10	0	0	G	17837425	C	G	17837425	3	3	21	1	0	0	0	0	1	0	0	0	9262	913	32	3	1250	3	MAP1S	19	17837425	Missense_Mutation	SNP	C	TCGA-OR-A5JT-01A-11D-A29I-10	2959605	17837425	41291558	82	3780										
RINL	126432	hgsc.bcm.edu	37	chr19	39360720	39360720	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0465116279069767	4	0.962598768336772	1.19864071671301	3.89558232931727	0.389558232931727	0.485714285714286	1	0	ggctccgcaaggcgggggcgGggctctgcccttccggtccc	17	16	1	0	rs8110393		TCGA-OR-A5JT-01A-11D-A29I-10	TCGA-OR-A5JT-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac406c92-67af-4d6c-a981-610bd6c674bd	1795e496-6515-464d-9d01-7d391fc0a20e	.	RINL-91	NM_001195833	exon9	c.C1205T	p.P402L	GGGGCGGGGCTCT	.	20	20	1	0	G|0.349;A|0.651	0	0	0	0	0	A	39360720	G	A	39360720	3	1	21	1	0	0	0	0	1	0	0	0	13410	1232	43	3	511	3	RINL	19	39360720	Missense_Mutation	SNP	G	TCGA-OR-A5JT-01A-11D-A29I-10	21523295	39360720	19768263	83	3781										
ACTR5	79913	hgsc.bcm.edu	37	chr20	37377139	37377139	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0465116279069767	4	0.962598768336772	1.19864071671301	3.89558232931727	0.389558232931727	0.485714285714286	1	0	aagatggcggcgaacgtgttCccgttccgcgacgcccgtgc	14	14	0	1	rs2254105	byfrequency	TCGA-OR-A5JT-01A-11D-A29I-10	TCGA-OR-A5JT-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac406c92-67af-4d6c-a981-610bd6c674bd	1795e496-6515-464d-9d01-7d391fc0a20e	.	ACTR5-90	NM_024855	exon1	c.C18T	p.F6F	CGTGTTCCCGTTC	.	31	9	0	0	C|0.769;T|0.231	1	0	1	0	0	T	37377139	C	T	37377139	2	4	21	1	0	0	0	0	0	0	0	1	215	854	30	3		3	ACTR5	20	37377139	Silent	SNP	C	TCGA-OR-A5JT-01A-11D-A29I-10		37377139	25648381	84	3782										
OTC	5009	bcgsc.ca	37	chrX	38260574	38260574	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0465116279069767	4	0.962598768336772	1.19864071671301	3.89558232931727	0.389558232931727	0.485714285714286	1	0	tattggctcgagtgtataaaCaatcagatttggacaccctg	9	8	1	1	novel		TCGA-OR-A5JT-01A-11D-A29I-10	TCGA-OR-A5JT-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac406c92-67af-4d6c-a981-610bd6c674bd	1795e496-6515-464d-9d01-7d391fc0a20e	.	OTC-172	NM_000531	exon5	c.C433A	p.Q145K	TATAAACAATCAG	.	168	15	111	5	.	0	0	0	0	0	A	38260574	C	A	38260574	3	1	21	1	0	0	0	0	1	0	0	0	11330	479	17	3	451	3	OTC	23	38260574	Missense_Mutation	SNP	C	TCGA-OR-A5JT-01A-11D-A29I-10		38260574	117009986	85	3783										
RAB40AL	282808	ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	102192303	102192303	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0465116279069767	4	0.962598768336772	1.19864071671301	3.89558232931727	0.389558232931727	0.485714285714286	1	0	ttcctgctcaagttcctgctGgtgggcgacagggacgtagg	15	10	1	0	rs150070913	byfrequency	TCGA-OR-A5JT-01A-11D-A29I-10	TCGA-OR-A5JT-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac406c92-67af-4d6c-a981-610bd6c674bd	1795e496-6515-464d-9d01-7d391fc0a20e	.	RAB40AL-92	NM_001031834	exon1	c.G57T	p.L19L	CCTGCTGGTGGGC	.	410	91	249	2	G|0.998;T|0.002	1	1	0	0	0	T	102192303	G	T	102192303	2	4	21	1	0	0	0	0	0	0	0	1	12975	1335	47	3		3	RAB40AL	23	102192303	Silent	SNP	G	TCGA-OR-A5JT-01A-11D-A29I-10	63931729	102192303	53078257	86	3784										
ACTRT2	140625	bcgsc.ca	37	chr1	2938569	2938569	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	tgaaacccagcgaccagcccCtgcttgcaacggagccctcc	9	18	0	1	rs35806103	byfrequency	TCGA-OR-A5JV-01A-11D-A29I-10	TCGA-OR-A5JV-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	242948fe-72e8-4487-b3b0-139297360446	b7c4c670-624d-4278-a166-779e9c35cb9e	.	ACTRT2-90	NM_080431	exon1	c.C319T	p.L107L	CAGCCCCTGCTTG	.	109	5	154	2	C|0.963;T|0.037	0	0	0	0	0	T	2938569	C	T	2938569	2	4	22	1	0	0	0	0	0	0	0	1	219	680	24	3		3	ACTRT2	1	2938569	Silent	SNP	C	TCGA-OR-A5JV-01A-11D-A29I-10		2938569	246312052	1	3785										
MED8	112950	ucsc.edu	37	chr1	43850152	43850152	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0	0	1	0	0	0	1	1	0	gcaggtgggcatttttttttCcttcctggcccagaagcttc	10	11	0	1	novel		TCGA-OR-A5JV-01A-11D-A29I-10	TCGA-OR-A5JV-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	242948fe-72e8-4487-b3b0-139297360446	b7c4c670-624d-4278-a166-779e9c35cb9e	.	MED8-68	NM_052877	exon8	c.G875A	p.G292E	TTTTTTCCTTCCT	.	128	4	127	1	.	4	3	1	0	0	T	43850152	C	T	43850152	3	4	22	1	0	0	0	0	1	0	0	0	9481	855	30	3	34	3	MED8	1	43850152	Missense_Mutation	SNP	C	TCGA-OR-A5JV-01A-11D-A29I-10	40911583	43850152	205400469	2	3786										
HRNR	388697	bcgsc.ca	37	chr1	152189029	152189029	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	gactgacgggagccagacccAtgctgaccatagcgggaaga	14	11	0	4	rs76438416	byfrequency	TCGA-OR-A5JV-01A-11D-A29I-10	TCGA-OR-A5JV-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	242948fe-72e8-4487-b3b0-139297360446	b7c4c670-624d-4278-a166-779e9c35cb9e	.	HRNR-93	NM_001009931	exon3	c.T5076C	p.H1692H	AGACCCATGCTGA	.	399	42	575	26	A|0.993;G|0.007	7	7	0	0	0	G	152189029	A	G	152189029	2	3	22	1	0	0	0	0	0	0	0	1	7380	214	8	4		4	HRNR	1	152189029	Silent	SNP	A	TCGA-OR-A5JV-01A-11D-A29I-10	108338877	152189029	97061592	3	3787										
RABGAP1L	9910	broad.mit.edu	37	chr1	174210750	174210750	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	acagagagttcccatggttcGgaagaatttcagatacatgt	10	7	1	3	rs144504710	byfrequency	TCGA-OR-A5JV-01A-11D-A29I-10	TCGA-OR-A5JV-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	242948fe-72e8-4487-b3b0-139297360446	b7c4c670-624d-4278-a166-779e9c35cb9e	.	RABGAP1L-540	NM_014857	exon5	c.G672A	p.S224S	TGGTTCGGAAGAA	.	100	4	87	0	G|0.999;A|0.001	6	6	0	0	0	A	174210750	G	A	174210750	2	1	22	1	0	0	0	0	0	0	0	1	13000	1103	39	1		1	RABGAP1L	1	174210750	Silent	SNP	G	TCGA-OR-A5JV-01A-11D-A29I-10	22021721	174210750	75039871	4	3788										
TOR3A	64222	hgsc.bcm.edu	37	chr1	179051300	179051300	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	ggcgccagctttggctctttTtcctgctgctgctcccgggc	12	15	1	0	rs2296377	byfrequency	TCGA-OR-A5JV-01A-11D-A29I-10	TCGA-OR-A5JV-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	242948fe-72e8-4487-b3b0-139297360446	b7c4c670-624d-4278-a166-779e9c35cb9e	.	TOR3A-90	NM_022371	exon1	c.T37C	p.F13L	CTCTTTTTCCTGC	.	6	4	0	0	T|0.229;C|0.771	2	0	2	0	0	C	179051300	T	C	179051300	3	2	22	1	0	0	0	0	1	0	0	0	16414	1841	64	4	39	4	TOR3A	1	179051300	Missense_Mutation	SNP	T	TCGA-OR-A5JV-01A-11D-A29I-10	4840550	179051300	70199321	5	3789										
OBSCN	84033	hgsc.bcm.edu	37	chr1	228504670	228504670	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	gcgacgccgtggcctctgcgCggctcaccgtgctgggtggg	18	14	2	0	rs11810627	byfrequency	TCGA-OR-A5JV-01A-11D-A29I-10	TCGA-OR-A5JV-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	242948fe-72e8-4487-b3b0-139297360446	b7c4c670-624d-4278-a166-779e9c35cb9e	.	OBSCN-403	NM_001271223	exon62	c.C16417T	p.R5473W	TCTGCGCGGCTCA	.	22	19	0	0	C|0.643;T|0.357	0	0	0	0	0	T	228504670	C	T	228504670	3	4	22	1	0	0	0	0	1	0	0	0	10841	759	27	1	13744	1	OBSCN	1	228504670	Missense_Mutation	SNP	C	TCGA-OR-A5JV-01A-11D-A29I-10	49453370	228504670	20745951	6	3790										
ARID4B	51742	broad.mit.edu	37	chr1	235377221	235377221	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	actttcatgcctggtggataGcactcaaactcctcttcctc	6	14	3	0	novel		TCGA-OR-A5JV-01A-11D-A29I-10	TCGA-OR-A5JV-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	242948fe-72e8-4487-b3b0-139297360446	b7c4c670-624d-4278-a166-779e9c35cb9e	.	ARID4B-228	NM_016374	exon17	c.C1704A	p.C568X	TGGATAGCACTCA	.	116	4	118	0	.	6	6	0	0	0	T	235377221	G	T	235377221	4	4	22	1	0	0	0	0	0	1	0	0	920	963	34	3	2266	3	ARID4B	1	235377221	Nonsense_Mutation	SNP	G	TCGA-OR-A5JV-01A-11D-A29I-10	6872551	235377221	13873400	7	3791										
ZP4	57829	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	238048868	238048868	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	caccaacaccgtagtaagagCcatagtttttatctgcaaga	7	10	1	2	novel		TCGA-OR-A5JV-01A-11D-A29I-10	TCGA-OR-A5JV-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	242948fe-72e8-4487-b3b0-139297360446	b7c4c670-624d-4278-a166-779e9c35cb9e	.	ZP4-93	NM_021186	exon8	c.G983A	p.G328D	TAAGAGCCATAGT	.	161	27	160	0	.	0	0	0	0	0	T	238048868	C	T	238048868	3	4	22	1	0	0	0	0	1	0	0	0	18255	739	26	3	659	3	ZP4	1	238048868	Missense_Mutation	SNP	C	TCGA-OR-A5JV-01A-11D-A29I-10	2671647	238048868	11201753	8	3792										
TADA3	10474	broad.mit.edu	37	chr3	9831618	9831618	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	agcttcaggaatcgtctgtcAcctttcttatcctgccagtc	7	13	4	0	novel		TCGA-OR-A5JV-01A-11D-A29I-10	TCGA-OR-A5JV-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	242948fe-72e8-4487-b3b0-139297360446	b7c4c670-624d-4278-a166-779e9c35cb9e	.	TADA3-226	NM_133480	exon3	c.T237G	p.G79G	TCTGTCACCTTTC	.	47	5	53	5	.	92	91	1	0	0	C	9831618	A	C	9831618	2	2	22	1	0	0	0	0	0	0	0	1	15549	146	6	5		5	TADA3	3	9831618	Silent	SNP	A	TCGA-OR-A5JV-01A-11D-A29I-10		9831618	188190812	9	3793										
ROBO2	6092	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	77526667	77526667	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	ccggggacacccagaacccaCcatctactggaaaaaagaca	8	14	1	2	novel		TCGA-OR-A5JV-01A-11D-A29I-10	TCGA-OR-A5JV-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	242948fe-72e8-4487-b3b0-139297360446	b7c4c670-624d-4278-a166-779e9c35cb9e	.	ROBO2-328	NM_002942	exon3	c.C491G	p.T164S	AACCCACCATCTA	.	189	25	207	0	.	0	0	0	0	0	G	77526667	C	G	77526667	3	3	22	1	0	0	0	0	1	0	0	0	13549	507	18	3	503	3	ROBO2	3	77526667	Missense_Mutation	SNP	C	TCGA-OR-A5JV-01A-11D-A29I-10	67695049	77526667	120495763	10	3794										
HCLS1	3059	hgsc.bcm.edu;ucsc.edu	37	chr3	121351315	121351315	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	tcaggctcgggctcaggctcGggctcaggctcaggctctgc	15	14	5	0	rs80289672	byfrequency	TCGA-OR-A5JV-01A-11D-A29I-10	TCGA-OR-A5JV-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	242948fe-72e8-4487-b3b0-139297360446	b7c4c670-624d-4278-a166-779e9c35cb9e	.	HCLS1-90	NM_005335	exon12	c.C1104T	p.P368P	AGGCTCGGGCTCA	.	42	7	36	0	G|0.936;A|0.064	228	133	95	0	0	A	121351315	G	A	121351315	2	1	22	1	0	0	0	0	0	0	0	1	7016	1103	39	1		1	HCLS1	3	121351315	Silent	SNP	G	TCGA-OR-A5JV-01A-11D-A29I-10	43824648	121351315	76671115	11	3795										
SI	6476	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	164709159	164709159	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	acctgtaaaatgtgttttgaGctggctcttgacatggtagg	12	6	1	2	novel		TCGA-OR-A5JV-01A-11D-A29I-10	TCGA-OR-A5JV-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	242948fe-72e8-4487-b3b0-139297360446	b7c4c670-624d-4278-a166-779e9c35cb9e	.	SI-104	NM_001041	exon44	c.C5090G	p.A1697G	TTTTGAGCTGGCT	.	127	28	150	0	.	0	0	0	0	0	C	164709159	G	C	164709159	3	2	22	1	0	0	0	0	1	0	0	0	14332	971	34	3	413	3	SI	3	164709159	Missense_Mutation	SNP	G	TCGA-OR-A5JV-01A-11D-A29I-10	43357844	164709159	33313271	12	3796										
KLHL6	89857	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	183225850	183225850	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	tcttatcttctactcacctcAttgccagaaaggtggtacat	6	11	5	1	novel		TCGA-OR-A5JV-01A-11D-A29I-10	TCGA-OR-A5JV-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	242948fe-72e8-4487-b3b0-139297360446	b7c4c670-624d-4278-a166-779e9c35cb9e	.	KLHL6-93	NM_130446	exon3	c.T906A	p.N302K	CACCTCATTGCCA	.	130	21	109	0	.	0	0	0	0	0	T	183225850	A	T	183225850	3	4	22	1	0	0	0	0	1	0	0	0	8414	214	8	5	979	5	KLHL6	3	183225850	Missense_Mutation	SNP	A	TCGA-OR-A5JV-01A-11D-A29I-10	18516691	183225850	14796580	13	3797										
MUC4	4585	bcgsc.ca	37	chr3	195510833	195510833	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	atgaagagaggtggcgtgacGtgtggataatgaggaagcat	17	3	0	4	novel		TCGA-OR-A5JV-01A-11D-A29I-10	TCGA-OR-A5JV-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	242948fe-72e8-4487-b3b0-139297360446	b7c4c670-624d-4278-a166-779e9c35cb9e	.	MUC4-90	NM_018406	exon2	c.C7618T	p.R2540C	CGTGACGTGTGGA	.	414	144	417	3	.	0	0	0	0	0	A	195510833	G	A	195510833	3	1	22	1	0	0	0	0	1	0	0	0	10006	1145	40	1		1	MUC4	3	195510833	Missense_Mutation	SNP	G	TCGA-OR-A5JV-01A-11D-A29I-10	12284983	195510833	2511597	14	3798										
SORCS2	57537	hgsc.bcm.edu	37	chr4	7725585	7725585	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	aacacggcaggccacgatgaGgcggtgctctttgtccaggt	14	11	1	1	rs2285779		TCGA-OR-A5JV-01A-11D-A29I-10	TCGA-OR-A5JV-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	242948fe-72e8-4487-b3b0-139297360446	b7c4c670-624d-4278-a166-779e9c35cb9e	.	SORCS2-91	NM_020777	exon19	c.G2586A	p.E862E	CGATGAGGCGGTG	.	58	12	53	0	T|0.002;C|0.998	0	0	0	0	0	A	7725585	G	A	7725585	2	1	22	1	0	0	0	0	0	0	0	1	14966	991	35	3		3	SORCS2	4	7725585	Silent	SNP	G	TCGA-OR-A5JV-01A-11D-A29I-10		7725585	183428691	15	3799										
GPR78	27201	hgsc.bcm.edu	37	chr4	8583231	8583231	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	cgcttcgcagccttcaccgcCacgctccatgccgtgggctt	10	18	1	0	rs61741008	byfrequency	TCGA-OR-A5JV-01A-11D-A29I-10	TCGA-OR-A5JV-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	242948fe-72e8-4487-b3b0-139297360446	b7c4c670-624d-4278-a166-779e9c35cb9e	.	GPR78-516	NM_080819	exon1	c.C522A	p.A174A	CACCGCCACGCTC	.	21	10	2	0	C|0.992;A|0.008	0	0	0	0	0	A	8583231	C	A	8583231	2	1	22	1	0	0	0	0	0	0	0	1	6730	581	21	3		3	GPR78	4	8583231	Silent	SNP	C	TCGA-OR-A5JV-01A-11D-A29I-10	857646	8583231	182571045	16	3800										
TECRL	253017	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	65145874	65145874	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	atcttatgtttcttttgtgcCcacaaagacatctggatact	6	9	3	1	novel		TCGA-OR-A5JV-01A-11D-A29I-10	TCGA-OR-A5JV-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	242948fe-72e8-4487-b3b0-139297360446	b7c4c670-624d-4278-a166-779e9c35cb9e	.	TECRL-90	NM_001010874	exon12	c.G1008T	p.W336C	TTGTGCCCACAAA	.	46	11	43	0	.	0	0	0	0	0	A	65145874	C	A	65145874	3	1	22	1	0	0	0	0	1	0	0	0	15783	624	22	3	87	3	TECRL	4	65145874	Missense_Mutation	SNP	C	TCGA-OR-A5JV-01A-11D-A29I-10	56562643	65145874	126008402	17	3801										
SLC4A4	8671	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	72319242	72319242	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	ggactaattaaagacataaaGaggaaagcgccattttttgc	9	6	0	2	novel		TCGA-OR-A5JV-01A-11D-A29I-10	TCGA-OR-A5JV-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	242948fe-72e8-4487-b3b0-139297360446	b7c4c670-624d-4278-a166-779e9c35cb9e	.	SLC4A4-95	NM_001098484	exon12	c.G1353T	p.K451N	CATAAAGAGGAAA	.	59	24	57	0	.	0	0	0	0	0	T	72319242	G	T	72319242	3	4	22	1	0	0	0	0	1	0	0	0	14691	933	33	3	1516	3	SLC4A4	4	72319242	Missense_Mutation	SNP	G	TCGA-OR-A5JV-01A-11D-A29I-10	7173368	72319242	118835034	18	3802										
FHDC1	85462	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	153889150	153889150	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	agattatctctggagaacacGgaggcagaactgcacttgct	11	9	1	3	rs146044034		TCGA-OR-A5JV-01A-11D-A29I-10	TCGA-OR-A5JV-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	242948fe-72e8-4487-b3b0-139297360446	b7c4c670-624d-4278-a166-779e9c35cb9e	.	FHDC1-136	NM_033393	exon9	c.G1119A	p.T373T	GAACACGGAGGCA	.	97	24	68	0	G|1.000;A|0.000	0	0	0	0	0	A	153889150	G	A	153889150	2	1	22	1	0	0	0	0	0	0	0	1	5895	1103	39	1		1	FHDC1	4	153889150	Silent	SNP	G	TCGA-OR-A5JV-01A-11D-A29I-10	81569908	153889150	37265126	19	3803										
PALLD	23022	broad.mit.edu	37	chr4	169633067	169633067	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	caccacctctgcttgccaaaCcaaaactgtgagtatttctg	6	13	2	1	novel		TCGA-OR-A5JV-01A-11D-A29I-10	TCGA-OR-A5JV-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	242948fe-72e8-4487-b3b0-139297360446	b7c4c670-624d-4278-a166-779e9c35cb9e	.	PALLD-94	NM_001166108	exon10	c.C1957A	p.P653T	GCCAAACCAAAAC	.	71	3	59	1	.	0	0	0	0	0	A	169633067	C	A	169633067	3	1	22	1	0	0	0	0	1	0	0	0	11436	507	18	3	1991	3	PALLD	4	169633067	Missense_Mutation	SNP	C	TCGA-OR-A5JV-01A-11D-A29I-10	15743917	169633067	21521209	20	3804										
PCDHB7	56129	hgsc.bcm.edu	37	chr5	140554140	140554140	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	ctccgcgccctgcaccgagcCgttgccccgggcggccgagc	14	20	0	0	rs13189280		TCGA-OR-A5JV-01A-11D-A29I-10	TCGA-OR-A5JV-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	242948fe-72e8-4487-b3b0-139297360446	b7c4c670-624d-4278-a166-779e9c35cb9e	.	PCDHB7-95	NM_018940	exon1	c.C1724T	p.P575L	CCGAGCCGTTGCC	.	43	6	2	0	C|1.000;|0.000	7	7	0	0	0	T	140554140	C	T	140554140	3	4	22	1	0	0	0	0	1	0	0	0	11576	652	23	1	1726	1	PCDHB7	5	140554140	Missense_Mutation	SNP	C	TCGA-OR-A5JV-01A-11D-A29I-10		140554140	40361120	21	3805										
SPINK5	11005	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	147480929	147480929	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	cttttttagccaagcagaagAagaagaaaagaaaaagaagg	10	4	0	6	novel		TCGA-OR-A5JV-01A-11D-A29I-10	TCGA-OR-A5JV-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	242948fe-72e8-4487-b3b0-139297360446	b7c4c670-624d-4278-a166-779e9c35cb9e	.	SPINK5-138	NM_001127699	exon14	c.A1232G	p.E411G	CAGAAGAAGAAGA	.	233	35	164	0	.	0	0	0	0	0	G	147480929	A	G	147480929	3	3	22	1	0	0	0	0	1	0	0	0	15099	246	9	4	1286	4	SPINK5	5	147480929	Missense_Mutation	SNP	A	TCGA-OR-A5JV-01A-11D-A29I-10	6926789	147480929	33434331	22	3806										
RREB1	6239	hgsc.bcm.edu	37	chr6	7230680	7230680	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	cggccgcggcctgggcggggGccacaagggccgcaagccct	18	16	0	0	rs9502564	byfrequency	TCGA-OR-A5JV-01A-11D-A29I-10	TCGA-OR-A5JV-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	242948fe-72e8-4487-b3b0-139297360446	b7c4c670-624d-4278-a166-779e9c35cb9e	.	RREB1-144	NM_001003700	exon10	c.G2348T	p.G783V	GCGGGGGCCACAA	.	7	6	0	0	G|0.546;T|0.454	2	0	2	0	0	T	7230680	G	T	7230680	3	4	22	1	0	0	0	0	1	0	0	0	13714	1203	42	3	2374	3	RREB1	6	7230680	Missense_Mutation	SNP	G	TCGA-OR-A5JV-01A-11D-A29I-10		7230680	163884387	23	3807										
PKHD1	5314	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	51695775	51695775	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	attttaaagctgattcagggGcagaggtagaagctagaaaa	12	4	1	4	novel		TCGA-OR-A5JV-01A-11D-A29I-10	TCGA-OR-A5JV-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	242948fe-72e8-4487-b3b0-139297360446	b7c4c670-624d-4278-a166-779e9c35cb9e	.	PKHD1-603	NM_170724	exon52	c.C8186G	p.A2729G	TCAGGGGCAGAGG	.	38	25	47	0	.	0	0	0	0	0	C	51695775	G	C	51695775	3	2	22	1	0	0	0	0	1	0	0	0	12000	1203	42	3	4141	3	PKHD1	6	51695775	Missense_Mutation	SNP	G	TCGA-OR-A5JV-01A-11D-A29I-10	44465095	51695775	119419292	24	3808										
MAP7	9053	hgsc.bcm.edu	37	chr6	136682172	136682172	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	ggcgcgctctgcctcctcccGctcgcgcagcgcccgctcct	11	22	1	0	rs2076190	byfrequency	TCGA-OR-A5JV-01A-11D-A29I-10	TCGA-OR-A5JV-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	242948fe-72e8-4487-b3b0-139297360446	b7c4c670-624d-4278-a166-779e9c35cb9e	.	MAP7-90	NM_001198609	exon12	c.C1762T	p.R588W	CCTCCCGCTCGCG	.	18	14	0	0	G|0.243;A|0.757	5	0	4	1	0	A	136682172	G	A	136682172	3	1	22	1	0	0	0	0	1	0	0	0	9294	1086	38	1	605	1	MAP7	6	136682172	Missense_Mutation	SNP	G	TCGA-OR-A5JV-01A-11D-A29I-10	84986397	136682172	34432895	25	3809										
GARS	2617	hgsc.bcm.edu	37	chr7	30634548	30634548	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	ccgcaggctcatgccctctcCgcgtccagtgctgcttagag	11	16	2	1	rs62636572	byfrequency	TCGA-OR-A5JV-01A-11D-A29I-10	TCGA-OR-A5JV-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	242948fe-72e8-4487-b3b0-139297360446	b7c4c670-624d-4278-a166-779e9c35cb9e	.	GARS-91	NM_002047	exon1	c.C11T	p.P4L	CCTCTCCGCGTCC	.	21	10	0	0	C|0.986;T|0.014	9	3	6	0	0	T	30634548	C	T	30634548	3	4	22	1	0	0	0	0	1	0	0	0	6262	652	23	1	13	1	GARS	7	30634548	Missense_Mutation	SNP	C	TCGA-OR-A5JV-01A-11D-A29I-10		30634548	128504115	26	3810										
GARS	2617	hgsc.bcm.edu	37	chr7	30634661	30634661	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	ccctcagcgcggcctcctgcCccccgatctccttgcccgcc	8	24	2	0	rs1049402	byfrequency	TCGA-OR-A5JV-01A-11D-A29I-10	TCGA-OR-A5JV-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	242948fe-72e8-4487-b3b0-139297360446	b7c4c670-624d-4278-a166-779e9c35cb9e	.	GARS-91	NM_002047	exon1	c.C124G	p.P42A	TCCTGCCCCCCGA	.	10	10	0	0	C|0.329;G|0.671	37	0	37	0	0	G	30634661	C	G	30634661	3	3	22	1	0	0	0	0	1	0	0	0	6262	623	22	3	126	3	GARS	7	30634661	Missense_Mutation	SNP	C	TCGA-OR-A5JV-01A-11D-A29I-10	113	30634661	128504002	27	3811										
BBS9	27241	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	33388714	33388714	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	cagagtgatattgcaaaaagCcaaattatcagtctacgtgc	8	8	2	2	novel		TCGA-OR-A5JV-01A-11D-A29I-10	TCGA-OR-A5JV-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	242948fe-72e8-4487-b3b0-139297360446	b7c4c670-624d-4278-a166-779e9c35cb9e	.	BBS9-230	NM_014451	exon13	c.C1364A	p.A455D	AAAAAGCCAAATT	.	109	21	94	0	.	0	0	0	0	0	A	33388714	C	A	33388714	3	1	22	1	0	0	0	0	1	0	0	0	1343	739	26	3	1410	3	BBS9	7	33388714	Missense_Mutation	SNP	C	TCGA-OR-A5JV-01A-11D-A29I-10	2754053	33388714	125749949	28	3812										
ATP6V0E2	155066	hgsc.bcm.edu	37	chr7	149571095	149571095	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	cgctgcccggctggggacccGcgcacctgcagcgcccgctg	15	19	0	0	rs79377053		TCGA-OR-A5JV-01A-11D-A29I-10	TCGA-OR-A5JV-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	242948fe-72e8-4487-b3b0-139297360446	b7c4c670-624d-4278-a166-779e9c35cb9e	.	.	NM_001100592	exon1	c.G88A	p.A30T	GGACCCGCGCACC	.	21	17	0	0	G|0.870;A|0.130	10	3	7	0	0	A	149571095	G	A	149571095	3	1	22	1	0	0	0	0	1	0	0	0	1177	1087	38	1	90	1	ATP6V0E2	7	149571095	Missense_Mutation	SNP	G	TCGA-OR-A5JV-01A-11D-A29I-10	116182381	149571095	9567568	29	3813										
EN2	2020	hgsc.bcm.edu	37	chr7	155251183	155251183	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	ggcggcggcggtagcagcccGggcgaagcggacaccgggcg	21	13	0	0	rs77846527		TCGA-OR-A5JV-01A-11D-A29I-10	TCGA-OR-A5JV-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	242948fe-72e8-4487-b3b0-139297360446	b7c4c670-624d-4278-a166-779e9c35cb9e	.	EN2-90	NM_001427	exon1	c.G111A	p.P37P	CAGCCCGGGCGAA	.	12	8	1	0	G|0.911;A|0.089	0	0	0	0	0	A	155251183	G	A	155251183	2	1	22	1	0	0	0	0	0	0	0	1	5123	1103	39	1		1	EN2	7	155251183	Silent	SNP	G	TCGA-OR-A5JV-01A-11D-A29I-10	5680088	155251183	3887480	30	3814										
CSMD1	64478	broad.mit.edu	37	chr8	3889601	3889601	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	caggatttctccaggatttcCacaagtgtggctaggtaaaa	10	8	1	0	novel		TCGA-OR-A5JV-01A-11D-A29I-10	TCGA-OR-A5JV-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	242948fe-72e8-4487-b3b0-139297360446	b7c4c670-624d-4278-a166-779e9c35cb9e	.	CSMD1-86	NM_033225	exon4	c.G436T	p.G146X	GATTTCCACAAGT	.	63	10	44	1	.	0	0	0	0	0	A	3889601	C	A	3889601	4	1	22	1	0	0	0	0	0	1	0	0	3950	603	21	3	10339	3	CSMD1	8	3889601	Nonsense_Mutation	SNP	C	TCGA-OR-A5JV-01A-11D-A29I-10		3889601	142474421	31	3815										
CRH	1392	hgsc.bcm.edu	37	chr8	67089425	67089425	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	gaagggcggctgccgctgccTccggcgaggagcgaggaggc	20	12	0	0	rs6159	byfrequency;by2hit2allele;by1000genomes	TCGA-OR-A5JV-01A-11D-A29I-10	TCGA-OR-A5JV-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	242948fe-72e8-4487-b3b0-139297360446	b7c4c670-624d-4278-a166-779e9c35cb9e	.	CRH-90	NM_000756	exon2	c.A288C	p.G96G	GCTGCCTCCGGCG	.	25	8	1	0	T|0.642;G|0.358	0	0	0	0	0	G	67089425	T	G	67089425	2	3	22	1	0	0	0	0	0	0	0	1	3875	1538	54	5		5	CRH	8	67089425	Silent	SNP	T	TCGA-OR-A5JV-01A-11D-A29I-10	63199824	67089425	79274597	32	3816										
ZNF696	79943	hgsc.bcm.edu	37	chr8	144378868	144378868	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	ggcttcttccggcaccagcgActccacacgggcgagaagcc	12	16	1	1	rs7386259	byfrequency	TCGA-OR-A5JV-01A-11D-A29I-10	TCGA-OR-A5JV-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	242948fe-72e8-4487-b3b0-139297360446	b7c4c670-624d-4278-a166-779e9c35cb9e	.	ZNF696-90	NM_030895	exon3	c.A1023G	p.R341R	CCAGCGACTCCAC	.	10	9	0	0	A|0.118;G|0.882	0	0	0	0	0	G	144378868	A	G	144378868	2	3	22	1	0	0	0	0	0	0	0	1	18136	262	10	4		4	ZNF696	8	144378868	Silent	SNP	A	TCGA-OR-A5JV-01A-11D-A29I-10	77289443	144378868	1985154	33	3817										
PLEC	5339	hgsc.bcm.edu	37	chr8	145001784	145001784	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	agcctgccagcgctcaagcaActgggcgacccgctcccgcc	11	19	1	0	rs3135109	byfrequency	TCGA-OR-A5JV-01A-11D-A29I-10	TCGA-OR-A5JV-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	242948fe-72e8-4487-b3b0-139297360446	b7c4c670-624d-4278-a166-779e9c35cb9e	.	PLEC-141	NM_201380	exon27	c.T3961C	p.L1321L	CAAGCAACTGGGC	.	7	6	0	0	G|0.246;A|0.754	6	0	6	0	0	G	145001784	A	G	145001784	2	3	22	1	0	0	0	0	0	0	0	1	12081	40	2	4		4	PLEC	8	145001784	Silent	SNP	A	TCGA-OR-A5JV-01A-11D-A29I-10	622916	145001784	1362238	34	3818										
CEP78	84131	broad.mit.edu	37	chr9	80851434	80851434	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	ctccgcggggtggactgggcGcctctgctgagcaccctcaa	14	15	2	1	novel		TCGA-OR-A5JV-01A-11D-A29I-10	TCGA-OR-A5JV-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	242948fe-72e8-4487-b3b0-139297360446	b7c4c670-624d-4278-a166-779e9c35cb9e	.	CEP78-69	NM_001098802	exon1	c.G168T	p.A56A	CTGGGCGCCTCTG	.	52	6	27	1	.	0	0	0	0	0	T	80851434	G	T	80851434	2	4	22	1	0	0	0	0	0	0	0	1	3268	1074	38	2		2	CEP78	9	80851434	Silent	SNP	G	TCGA-OR-A5JV-01A-11D-A29I-10		80851434	60361997	35	3819										
IDI1	3422	hgsc.bcm.edu	37	chr10	1094906	1094906	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	ggccccgcccccgggccgcgCagccaatcgctcgcgccagc	13	22	0	0	rs7091756	byfrequency	TCGA-OR-A5JV-01A-11D-A29I-10	TCGA-OR-A5JV-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	242948fe-72e8-4487-b3b0-139297360446	b7c4c670-624d-4278-a166-779e9c35cb9e	.	IDI1-90	NM_004508	exon1	c.G38A	p.C13Y	GCCGCGCAGCCAA	.	7	6	1	0	C|0.981;T|0.019	3	0	3	0	0	T	1094906	C	T	1094906	3	4	22	1	0	0	0	0	1	0	0	0	7520	710	25	3	836	3	IDI1	10	1094906	Missense_Mutation	SNP	C	TCGA-OR-A5JV-01A-11D-A29I-10		1094906	134439841	36	3820										
MUC5B	727897	hgsc.bcm.edu	37	chr11	1253980	1253980	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	caagggcgtacagctcagcgActggagggacggcgtctgca	16	11	2	0	rs202127660		TCGA-OR-A5JV-01A-11D-A29I-10	TCGA-OR-A5JV-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	242948fe-72e8-4487-b3b0-139297360446	b7c4c670-624d-4278-a166-779e9c35cb9e	.	.	NM_002458	exon17	c.A2045G	p.D682G	TCAGCGACTGGAG	.	67	11	42	0	.	0	0	0	0	0	G	1253980	A	G	1253980	3	3	22	1	0	0	0	0	1	0	0	0	10007	275	10	4	2120	4	MUC5B	11	1253980	Missense_Mutation	SNP	A	TCGA-OR-A5JV-01A-11D-A29I-10		1253980	133752536	37	3821										
NRXN2	9379	broad.mit.edu;bcgsc.ca	37	chr11	64428611	64428611	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	gactattcactgagatggagCctgggaatcaagggaaggca	14	7	2	1	novel		TCGA-OR-A5JV-01A-11D-A29I-10	TCGA-OR-A5JV-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	242948fe-72e8-4487-b3b0-139297360446	b7c4c670-624d-4278-a166-779e9c35cb9e	.	NRXN2-232	NM_015080	exon10	c.G1799T	p.G600V	ATGGAGCCTGGGA	.	35	8	74	0	.	0	0	0	0	0	A	64428611	C	A	64428611	3	1	22	1	0	0	0	0	1	0	0	0	10695	753	26	3	3664	3	NRXN2	11	64428611	Missense_Mutation	SNP	C	TCGA-OR-A5JV-01A-11D-A29I-10	63174631	64428611	70577905	38	3822										
SLCO1A2	6579	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	21445134	21445134	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	atccaggtatggcagccaaaGaataaatgaaactgctcatc	8	9	1	2	novel		TCGA-OR-A5JV-01A-11D-A29I-10	TCGA-OR-A5JV-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	242948fe-72e8-4487-b3b0-139297360446	b7c4c670-624d-4278-a166-779e9c35cb9e	.	SLCO1A2-157	NM_134431	exon13	c.C1574A	p.S525Y	GCCAAAGAATAAA	.	51	16	42	0	.	0	0	0	0	0	T	21445134	G	T	21445134	3	4	22	1	0	0	0	0	1	0	0	0	14757	942	33	3	454	3	SLCO1A2	12	21445134	Missense_Mutation	SNP	G	TCGA-OR-A5JV-01A-11D-A29I-10		21445134	112406761	39	3823										
HNRNPA1	3178	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	54676958	54676958	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	accagggcagtggctatggcGggagtggcagctatgacagc	17	9	0	1	novel		TCGA-OR-A5JV-01A-11D-A29I-10	TCGA-OR-A5JV-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	242948fe-72e8-4487-b3b0-139297360446	b7c4c670-624d-4278-a166-779e9c35cb9e	.	HNRNPA1-93	NM_031157	exon8	c.G847A	p.G283R	TATGGCGGGAGTG	.	97	36	73	0	.	26	17	9	0	0	A	54676958	G	A	54676958	3	1	22	1	0	0	0	0	1	0	0	0	7278	1116	39	1	877	1	HNRNPA1	12	54676958	Missense_Mutation	SNP	G	TCGA-OR-A5JV-01A-11D-A29I-10	33231824	54676958	79174937	40	3824										
CLN5	1203	hgsc.bcm.edu	37	chr13	77566090	77566090	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	gggcgcggggaggtgtcatgCgccggaacctgcgcttgggg	21	10	1	0	rs77416795		TCGA-OR-A5JV-01A-11D-A29I-10	TCGA-OR-A5JV-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	242948fe-72e8-4487-b3b0-139297360446	b7c4c670-624d-4278-a166-779e9c35cb9e	.	CLN5-91	NM_006493	exon1	c.C4T	p.R2C	GTCATGCGCCGGA	.	10	4	0	0	C|0.873;T|0.127	0	0	0	0	0	T	77566090	C	T	77566090	3	4	22	1	0	0	0	0	1	0	0	0	3550	768	27	1	6	1	CLN5	13	77566090	Missense_Mutation	SNP	C	TCGA-OR-A5JV-01A-11D-A29I-10		77566090	37603788	41	3825										
MAPKBP1	23005	bcgsc.ca	37	chr15	42115152	42115152	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	tgtagggaaccatccccatcCtcctcaagcctggcactgat	8	15	1	1	rs61729966	byfrequency	TCGA-OR-A5JV-01A-11D-A29I-10	TCGA-OR-A5JV-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	242948fe-72e8-4487-b3b0-139297360446	b7c4c670-624d-4278-a166-779e9c35cb9e	.	MAPKBP1-589	NM_001128608	exon29	c.C3348T	p.S1116S	CCCATCCTCCTCA	.	58	4	54	0	C|0.995;T|0.005	5	5	0	0	0	T	42115152	C	T	42115152	2	4	22	1	0	0	0	0	0	0	0	1	9320	668	24	3		3	MAPKBP1	15	42115152	Silent	SNP	C	TCGA-OR-A5JV-01A-11D-A29I-10		42115152	60416240	42	3826										
HAGH	3029	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	1872357	1872357	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	accccgtgctttctcgccgcGtccacgacctgcagtggccc	10	19	1	0	rs115850237	alternate_allele	TCGA-OR-A5JV-01A-11D-A29I-10	TCGA-OR-A5JV-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	242948fe-72e8-4487-b3b0-139297360446	b7c4c670-624d-4278-a166-779e9c35cb9e	.	HAGH-91	NM_005326	exon3	c.C258A	p.D86E	CGCCGCGTCCACG	.	38	10	38	0	G|1.000;A|0.000	0	0	0	0	0	T	1872357	G	T	1872357	3	4	22	1	0	0	0	0	1	0	0	0	6966	1136	40	2	696	2	HAGH	16	1872357	Missense_Mutation	SNP	G	TCGA-OR-A5JV-01A-11D-A29I-10		1872357	88482396	43	3827										
ZNF598	90850	hgsc.bcm.edu	37	chr16	2059674	2059674	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	acagcacgcagctcccgcctTcccgctcaggagctgccgcc	10	20	1	0	rs71384660		TCGA-OR-A5JV-01A-11D-A29I-10	TCGA-OR-A5JV-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	242948fe-72e8-4487-b3b0-139297360446	b7c4c670-624d-4278-a166-779e9c35cb9e	.	ZNF598-432	NM_178167	exon2	c.A74G	p.E25G	CCGCCTTCCCGCT	.	8	8	0	0	T|0.007;C|0.993	5	0	5	0	0	C	2059674	T	C	2059674	3	2	22	1	0	0	0	0	1	0	0	0	18065	1770	62	4	2689	4	ZNF598	16	2059674	Missense_Mutation	SNP	T	TCGA-OR-A5JV-01A-11D-A29I-10	187317	2059674	88295079	44	3828										
MEFV	4210	hgsc.bcm.edu	37	chr16	3304573	3304573	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	tgcgcgtccaggccctccgaGgccttctctctgcgtttgct	11	16	2	0	rs224223	byfrequency	TCGA-OR-A5JV-01A-11D-A29I-10	TCGA-OR-A5JV-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	242948fe-72e8-4487-b3b0-139297360446	b7c4c670-624d-4278-a166-779e9c35cb9e	.	MEFV-228	NM_000243	exon2	c.C495A	p.A165A	CTCCGAGGCCTTC	.	11	11	0	0	G|0.570;T|0.430	0	0	0	0	0	T	3304573	G	T	3304573	2	4	22	1	0	0	0	0	0	0	0	1	9487	987	35	3		3	MEFV	16	3304573	Silent	SNP	G	TCGA-OR-A5JV-01A-11D-A29I-10	1244899	3304573	87050180	45	3829										
DNAH3	55567	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr16	21042562	21042562	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	tgccccatcgtgatagccttGgggttgatgatcttgtactc	11	10	1	3	novel		TCGA-OR-A5JV-01A-11D-A29I-10	TCGA-OR-A5JV-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	242948fe-72e8-4487-b3b0-139297360446	b7c4c670-624d-4278-a166-779e9c35cb9e	.	DNAH3-167	NM_017539	exon37	c.C5244G	p.P1748P	AGCCTTGGGGTTG	.	112	20	99	0	.	0	0	0	0	0	C	21042562	G	C	21042562	2	2	22	1	0	0	0	0	0	0	0	1	4614	1335	47	3		3	DNAH3	16	21042562	Silent	SNP	G	TCGA-OR-A5JV-01A-11D-A29I-10	17737989	21042562	69312191	46	3830										
FHOD1	29109	hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	chr16	67268118	67268118	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	acacagggggcagggctctgGggtgttctggctgcaggggc	20	9	2	0	novel		TCGA-OR-A5JV-01A-11D-A29I-10	TCGA-OR-A5JV-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	242948fe-72e8-4487-b3b0-139297360446	b7c4c670-624d-4278-a166-779e9c35cb9e	.	FHOD1-221	NM_013241	exon13	c.C1488G	p.P496P	GCTCTGGGGTGTT	.	15	8	11	0	.	6	6	0	0	0	C	67268118	G	C	67268118	2	2	22	1	0	0	0	0	0	0	0	1	5901	1219	43	3		3	FHOD1	16	67268118	Silent	SNP	G	TCGA-OR-A5JV-01A-11D-A29I-10	46225556	67268118	23086635	47	3831										
ZFPM1	161882	hgsc.bcm.edu	37	chr16	88599697	88599705	+	In_Frame_Del	DEL	AGCCTCTGG	AGCCTCTGG	-													0	0	1	0	0	0	1	1	0	caacggagaggccagagcggAgcctctggcccagaatggag					novel		TCGA-OR-A5JV-01A-11D-A29I-10	TCGA-OR-A5JV-10A-01D-A29L-10	AGCCTCTGG	AGCCTCTGG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	242948fe-72e8-4487-b3b0-139297360446	b7c4c670-624d-4278-a166-779e9c35cb9e	.	ZFPM1-90	NM_153813	exon10	c.1331_1339del	p.444_447del	GAGCGGAGCCTCT	.	14	0	1	0	.	0	0	0	0	0	-	88599705	AGCCTCTGG	-	88599697	7	5	22	1	0	1	0	1	0	0	0	0	17694	304	11	0	1369	0	ZFPM1	16	88599697	In_Frame_Del	DEL	AGCCTCTGG	TCGA-OR-A5JV-01A-11D-A29I-10	21331579	88599697	1755056	48	3832										
MINK1	50488	hgsc.bcm.edu	37	chr17	4799079	4799079	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	cagaagtggagaagaagcagGgctggaccaccgtgggggac	18	8	0	3	novel		TCGA-OR-A5JV-01A-11D-A29I-10	TCGA-OR-A5JV-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	242948fe-72e8-4487-b3b0-139297360446	b7c4c670-624d-4278-a166-779e9c35cb9e	.	MINK1-943	NM_153827	exon27	c.G3316T	p.G1106C	AAGCAGGGCTGGA	.	70	5	69	0	.	62	62	0	0	0	T	4799079	G	T	4799079	3	4	22	1	0	0	0	0	1	0	0	0	9615	1232	43	3	3189	3	MINK1	17	4799079	Missense_Mutation	SNP	G	TCGA-OR-A5JV-01A-11D-A29I-10		4799079	76396131	49	3833										
SOX15	6665	hgsc.bcm.edu	37	chr17	7492611	7492611	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	ccgcagcgggaaggtccggcGcccgagctcttggccttgcg	16	15	1	0	novel		TCGA-OR-A5JV-01A-11D-A29I-10	TCGA-OR-A5JV-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	242948fe-72e8-4487-b3b0-139297360446	b7c4c670-624d-4278-a166-779e9c35cb9e	.	SOX15-135	NM_006942	exon1	c.C384A	p.G128G	TCCGGCGCCCGAG	.	67	4	5	0	.	0	0	0	0	0	T	7492611	G	T	7492611	2	4	22	1	0	0	0	0	0	0	0	1	14981	1074	38	2		2	SOX15	17	7492611	Silent	SNP	G	TCGA-OR-A5JV-01A-11D-A29I-10	2693532	7492611	73702599	50	3834										
CD300LG	146894	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	41930365	41930365	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	aaggcaaaagctcagcaaacCcagcccccaggattgagtga	10	12	1	2	novel		TCGA-OR-A5JV-01A-11D-A29I-10	TCGA-OR-A5JV-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	242948fe-72e8-4487-b3b0-139297360446	b7c4c670-624d-4278-a166-779e9c35cb9e	.	CD300LG-90	NM_145273	exon3	c.C465T	p.T155T	GCAAACCCAGCCC	.	79	15	100	0	.	0	0	0	0	0	T	41930365	C	T	41930365	2	4	22	1	0	0	0	0	0	0	0	1	3008	610	22	3		3	CD300LG	17	41930365	Silent	SNP	C	TCGA-OR-A5JV-01A-11D-A29I-10	34437754	41930365	39264845	51	3835										
QRICH2	84074	bcgsc.ca	37	chr17	74288472	74288472	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	caccaggttgtgccaaaccaTgctgatccactccaggttgg	10	13	0	1	novel		TCGA-OR-A5JV-01A-11D-A29I-10	TCGA-OR-A5JV-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	242948fe-72e8-4487-b3b0-139297360446	b7c4c670-624d-4278-a166-779e9c35cb9e	.	QRICH2-94	NM_032134	exon4	c.A1838G	p.H613R	AAACCATGCTGAT	.	218	15	241	5	.	0	0	0	0	0	C	74288472	T	C	74288472	3	2	22	1	0	0	0	0	1	0	0	0	12915	1464	51	4	3217	4	QRICH2	17	74288472	Missense_Mutation	SNP	T	TCGA-OR-A5JV-01A-11D-A29I-10	32358107	74288472	6906738	52	3836			1	16		2	2	37	T		8.488906e-05
QRICH2	84074	bcgsc.ca	37	chr17	74288508	74288508	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	gttggaccaaaccatgctgaTctgcaccaggttggaccaaa	10	11	1	1	novel		TCGA-OR-A5JV-01A-11D-A29I-10	TCGA-OR-A5JV-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	242948fe-72e8-4487-b3b0-139297360446	b7c4c670-624d-4278-a166-779e9c35cb9e	.	QRICH2-94	NM_032134	exon4	c.A1802T	p.D601V	TGCTGATCTGCAC	.	222	16	253	5	.	1	1	0	0	0	A	74288508	T	A	74288508	3	1	22	1	0	0	0	0	1	0	0	0	12915	1435	50	5	3253	5	QRICH2	17	74288508	Missense_Mutation	SNP	T	TCGA-OR-A5JV-01A-11D-A29I-10	36	74288508	6906702	53	3837			1	16		2	2	37	T		8.488906e-05
NPTX1	4884	hgsc.bcm.edu	37	chr17	78449948	78449948	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	cgccgcccgcccgggcctcgCcggctccggggtccagcgtg	16	20	0	0	rs144443274		TCGA-OR-A5JV-01A-11D-A29I-10	TCGA-OR-A5JV-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	242948fe-72e8-4487-b3b0-139297360446	b7c4c670-624d-4278-a166-779e9c35cb9e	.	NPTX1-90	NM_002522	exon1	c.G299A	p.G100D	GCCTCGCCGGCTC	.	5	4	0	0	C|0.910;T|0.090	0	0	0	0	0	T	78449948	C	T	78449948	3	4	22	1	0	0	0	0	1	0	0	0	10631	739	26	3	1019	3	NPTX1	17	78449948	Missense_Mutation	SNP	C	TCGA-OR-A5JV-01A-11D-A29I-10	4161440	78449948	2745262	54	3838										
RNF125	54941	hgsc.bcm.edu	37	chr18	29598847	29598847	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	atgggctccgtgctgagcacCgacagcggcaaatcggcgcc	14	14	0	1	rs34097443	byfrequency	TCGA-OR-A5JV-01A-11D-A29I-10	TCGA-OR-A5JV-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	242948fe-72e8-4487-b3b0-139297360446	b7c4c670-624d-4278-a166-779e9c35cb9e	.	RNF125-226	NM_017831	exon1	c.C21T	p.T7T	GAGCACCGACAGC	.	82	30	1	0	C|0.955;T|0.045	3	2	1	0	0	T	29598847	C	T	29598847	2	4	22	1	0	0	0	0	0	0	0	1	13469	639	23	1		1	RNF125	18	29598847	Silent	SNP	C	TCGA-OR-A5JV-01A-11D-A29I-10		29598847	48478401	55	3839										
POLRMT	5442	broad.mit.edu	37	chr19	629898	629898	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	cctgcaggcgcctggtcagcGccttgaactccccgctctgg	12	17	2	1	novel		TCGA-OR-A5JV-01A-11D-A29I-10	TCGA-OR-A5JV-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	242948fe-72e8-4487-b3b0-139297360446	b7c4c670-624d-4278-a166-779e9c35cb9e	.	POLRMT-92	NM_005035	exon3	c.C464T	p.A155V	GTCAGCGCCTTGA	.	82	13	88	1	.	9	4	5	0	0	A	629898	G	A	629898	3	1	22	1	0	0	0	0	1	0	0	0	12267	1087	38	1	3304	1	POLRMT	19	629898	Missense_Mutation	SNP	G	TCGA-OR-A5JV-01A-11D-A29I-10		629898	58499085	56	3840										
MUC16	94025	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	9068139	9068139	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	tttcttcggattttgtcaggCcagcaaaagtagaaagcatg	10	7	2	1	novel		TCGA-OR-A5JV-01A-11D-A29I-10	TCGA-OR-A5JV-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	242948fe-72e8-4487-b3b0-139297360446	b7c4c670-624d-4278-a166-779e9c35cb9e	.	MUC16-566	NM_024690	exon3	c.G19307T	p.G6436V	GTCAGGCCAGCAA	.	225	59	199	1	.	0	0	0	0	0	A	9068139	C	A	9068139	3	1	22	1	0	0	0	0	1	0	0	0	10001	739	26	3	24544	3	MUC16	19	9068139	Missense_Mutation	SNP	C	TCGA-OR-A5JV-01A-11D-A29I-10	8438241	9068139	50060844	57	3841										
PRKCSH	5589	hgsc.bcm.edu	37	chr19	11558367	11558367	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	gaggaggaggaggaggaggaGgaggaagaagaggctgaaga	23	1	0	4	novel		TCGA-OR-A5JV-01A-11D-A29I-10	TCGA-OR-A5JV-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	242948fe-72e8-4487-b3b0-139297360446	b7c4c670-624d-4278-a166-779e9c35cb9e	.	PRKCSH-90	NM_001001329	exon11	c.G963A	p.E321E	GGAGGAGGAGGAA	.	86	7	46	0	.	69	69	0	0	0	A	11558367	G	A	11558367	2	1	22	1	0	0	0	0	0	0	0	1	12548	991	35	3		3	PRKCSH	19	11558367	Silent	SNP	G	TCGA-OR-A5JV-01A-11D-A29I-10	2490228	11558367	47570616	58	3842										
LPHN1	22859	broad.mit.edu;bcgsc.ca	37	chr19	14288434	14288434	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	gcaaatcttgtcgtccgtgcGcccgtagttggcattctcca	10	13	2	0	novel		TCGA-OR-A5JV-01A-11D-A29I-10	TCGA-OR-A5JV-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	242948fe-72e8-4487-b3b0-139297360446	b7c4c670-624d-4278-a166-779e9c35cb9e	.	LPHN1-523	NM_001008701	exon3	c.C193T	p.R65C	CCGTGCGCCCGTA	.	114	5	73	0	.	7	7	0	0	0	A	14288434	G	A	14288434	3	1	22	1	0	0	0	0	1	0	0	0	8942	1087	38	1	4319	1	LPHN1	19	14288434	Missense_Mutation	SNP	G	TCGA-OR-A5JV-01A-11D-A29I-10	2730067	14288434	44840549	59	3843										
ZNF493	284443	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	21607539	21607539	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	atgtgaaaaatgtggcaaaaCtttctaccgattctcaaacc	6	9	2	1	novel		TCGA-OR-A5JV-01A-11D-A29I-10	TCGA-OR-A5JV-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	242948fe-72e8-4487-b3b0-139297360446	b7c4c670-624d-4278-a166-779e9c35cb9e	.	ZNF493-516	NM_001076678	exon4	c.C2078T	p.T693I	GCAAAACTTTCTA	.	71	7	64	0	.	7	3	4	0	0	T	21607539	C	T	21607539	3	4	22	1	0	0	0	0	1	0	0	0	17981	565	20	3	2155	3	ZNF493	19	21607539	Missense_Mutation	SNP	C	TCGA-OR-A5JV-01A-11D-A29I-10	7319105	21607539	37521444	60	3844										
ARHGAP33	115703	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr19	36275213	36275213	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	tcacctccgccggcctcgacCctgcaggtatgccctcccac	8	21	1	0	novel		TCGA-OR-A5JV-01A-11D-A29I-10	TCGA-OR-A5JV-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	242948fe-72e8-4487-b3b0-139297360446	b7c4c670-624d-4278-a166-779e9c35cb9e	.	ARHGAP33-229	NM_052948	exon16	c.C1561A	p.P521T	CTCGACCCTGCAG	.	88	9	67	0	.	1	0	1	0	0	A	36275213	C	A	36275213	3	1	22	1	0	0	0	0	1	0	0	0	882	623	22	3	1623	3	ARHGAP33	19	36275213	Missense_Mutation	SNP	C	TCGA-OR-A5JV-01A-11D-A29I-10	14667674	36275213	22853770	61	3845										
LILRB1	10859	bcgsc.ca	37	chr19	55143452	55143452	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	gaactcaggagggaatgtaaTcctccagtgtgactcacagg	12	9	2	1	rs1061680	byfrequency	TCGA-OR-A5JV-01A-11D-A29I-10	TCGA-OR-A5JV-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	242948fe-72e8-4487-b3b0-139297360446	b7c4c670-624d-4278-a166-779e9c35cb9e	.	LILRB1-137	NM_001081637	exon5	c.T425C	p.I142T	ATGTAATCCTCCA	.	120	8	121	1	T|0.567;C|0.433	5	5	0	0	0	C	55143452	T	C	55143452	3	2	22	1	0	0	0	0	1	0	0	0	8813	1435	50	4	439	4	LILRB1	19	55143452	Missense_Mutation	SNP	T	TCGA-OR-A5JV-01A-11D-A29I-10	18868239	55143452	3985531	62	3846										
ZNF154	7710	broad.mit.edu	37	chr19	58213468	58213468	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	tttatgagactggaatgataTgtaaaaaacttcccacattc	6	7	0	2	novel		TCGA-OR-A5JV-01A-11D-A29I-10	TCGA-OR-A5JV-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	242948fe-72e8-4487-b3b0-139297360446	b7c4c670-624d-4278-a166-779e9c35cb9e	.	ZNF154-90	NM_001085384	exon3	c.A849C	p.T283T	ATGATATGTAAAA	.	57	3	57	0	.	0	0	0	0	0	G	58213468	T	G	58213468	2	3	22	1	0	0	0	0	0	0	0	1	17772	1451	51	5		5	ZNF154	19	58213468	Silent	SNP	T	TCGA-OR-A5JV-01A-11D-A29I-10	3070016	58213468	915515	63	3847										
KIF16B	55614	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr20	16253901	16253901	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	ctccatcacccctggctctaCcccgtcccgtggctgctgta	8	19	2	0	novel		TCGA-OR-A5JV-01A-11D-A29I-10	TCGA-OR-A5JV-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	242948fe-72e8-4487-b3b0-139297360446	b7c4c670-624d-4278-a166-779e9c35cb9e	.	KIF16B-291	NM_024704	exon26	c.G3951A	p.G1317G	GCTCTACCCCGTC	.	123	34	79	0	.	5	3	2	0	0	T	16253901	C	T	16253901	2	4	22	1	0	0	0	0	0	0	0	1	8299	494	18	3		3	KIF16B	20	16253901	Silent	SNP	C	TCGA-OR-A5JV-01A-11D-A29I-10		16253901	46771619	64	3848										
MYBL2	4605	broad.mit.edu	37	chr20	42343869	42343869	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	ggcttcttgcaggccaagccCgagaaggcagcagtggccca	14	13	1	1	novel		TCGA-OR-A5JV-01A-11D-A29I-10	TCGA-OR-A5JV-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	242948fe-72e8-4487-b3b0-139297360446	b7c4c670-624d-4278-a166-779e9c35cb9e	.	MYBL2-415	NM_002466	exon13	c.C1920T	p.P640P	CAAGCCCGAGAAG	.	198	5	148	2	.	1	1	0	0	0	T	42343869	C	T	42343869	2	4	22	1	0	0	0	0	0	0	0	1	10038	639	23	1		1	MYBL2	20	42343869	Silent	SNP	C	TCGA-OR-A5JV-01A-11D-A29I-10	26089968	42343869	20681651	65	3849										
APCDD1L	164284	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr20	57036492	57036492	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0	0	1	0	0	0	1	1	0	ctgggcgcacctcgcaccccGagctgacccaccagccgccc	10	22	0	1	novel		TCGA-OR-A5JV-01A-11D-A29I-10	TCGA-OR-A5JV-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	242948fe-72e8-4487-b3b0-139297360446	b7c4c670-624d-4278-a166-779e9c35cb9e	.	APCDD1L-227	NM_153360	exon4	c.C860T	p.S287L	CACCCCGAGCTGA	.	170	23	38	0	.	0	0	0	0	0	A	57036492	G	A	57036492	3	1	22	1	0	0	0	0	1	0	0	0	766	1059	37	1	649	1	APCDD1L	20	57036492	Missense_Mutation	SNP	G	TCGA-OR-A5JV-01A-11D-A29I-10	14692623	57036492	5989028	66	3850										
CABLES2	81928	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr20	60966395	60966395	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	ccagcgcacagcttgcggttCtgtttgctgagcttgccctg	12	13	1	1	novel		TCGA-OR-A5JV-01A-11D-A29I-10	TCGA-OR-A5JV-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	242948fe-72e8-4487-b3b0-139297360446	b7c4c670-624d-4278-a166-779e9c35cb9e	.	CABLES2-91	NM_031215	exon9	c.G1206T	p.Q402H	GCGGTTCTGTTTG	.	120	20	92	1	.	11	7	4	0	0	A	60966395	C	A	60966395	3	1	22	1	0	0	0	0	1	0	0	0	2536	912	32	3	238	3	CABLES2	20	60966395	Missense_Mutation	SNP	C	TCGA-OR-A5JV-01A-11D-A29I-10	3929903	60966395	2059125	67	3851										
DIDO1	11083	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr20	61537287	61537287	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	agcagtcttttctggctttaCtgcattgtaattgtgatcgc	9	8	2	1	novel		TCGA-OR-A5JV-01A-11D-A29I-10	TCGA-OR-A5JV-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	242948fe-72e8-4487-b3b0-139297360446	b7c4c670-624d-4278-a166-779e9c35cb9e	.	DIDO1-96	NM_080797	exon6	c.G1540C	p.V514L	GCTTTACTGCATT	.	87	27	66	0	.	18	12	6	0	0	G	61537287	C	G	61537287	3	3	22	1	0	0	0	0	1	0	0	0	4533	565	20	3	5356	3	DIDO1	20	61537287	Missense_Mutation	SNP	C	TCGA-OR-A5JV-01A-11D-A29I-10	570892	61537287	1488233	68	3852										
MN1	4330	broad.mit.edu	37	chr22	28194900	28194900	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	cgctgctgctgctgctgctgTtgctgttgctgttgctgctg	14	11	0	0	novel		TCGA-OR-A5JV-01A-11D-A29I-10	TCGA-OR-A5JV-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	242948fe-72e8-4487-b3b0-139297360446	b7c4c670-624d-4278-a166-779e9c35cb9e	.	MN1-993	NM_002430	exon1	c.A1632G	p.Q544Q	CTGCTGTTGCTGT	.	21	5	10	0	.	173	3	169	0	1	C	28194900	T	C	28194900	2	2	22	1	0	0	0	0	0	0	0	1	9701	1722	60	4		4	MN1	22	28194900	Silent	SNP	T	TCGA-OR-A5JV-01A-11D-A29I-10		28194900	23109666	69	3853										
TRIOBP	11078	hgsc.bcm.edu	37	chr22	38122462	38122462	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	cagcagcgggggccgcacccAcagccctggccgtgcagagg	16	16	0	1	rs739138	byfrequency	TCGA-OR-A5JV-01A-11D-A29I-10	TCGA-OR-A5JV-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	242948fe-72e8-4487-b3b0-139297360446	b7c4c670-624d-4278-a166-779e9c35cb9e	.	TRIOBP-136	NM_001039141	exon7	c.A3899G	p.H1300R	GCACCCACAGCCC	.	14	14	0	0	A|0.354;G|0.646	0	0	0	0	0	G	38122462	A	G	38122462	3	3	22	1	0	0	0	0	1	0	0	0	16591	159	6	4	3917	4	TRIOBP	22	38122462	Missense_Mutation	SNP	A	TCGA-OR-A5JV-01A-11D-A29I-10	9927562	38122462	13182104	70	3854										
ZNF630	57232	ucsc.edu	37	chrX	47918424	47918424	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	ccagtgaggtgtgacttctgGgaaaaggccttcccacagtc	12	11	1	2	novel		TCGA-OR-A5JV-01A-11D-A29I-10	TCGA-OR-A5JV-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	242948fe-72e8-4487-b3b0-139297360446	b7c4c670-624d-4278-a166-779e9c35cb9e	.	ZNF630-131	NM_001037735	exon5	c.C1407A	p.S469S	CTTCTGGGAAAAG	.	36	4	18	0	.	6	6	0	0	0	T	47918424	G	T	47918424	2	4	22	1	0	0	0	0	0	0	0	1	18091	1219	43	3		3	ZNF630	23	47918424	Silent	SNP	G	TCGA-OR-A5JV-01A-11D-A29I-10		47918424	107352136	71	3855										
NUDT10	170685	broad.mit.edu	37	chrX	51076024	51076024	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	gtccgagaggtgtacgaagaGgcgggagtcaaggggaagtt	19	5	1	2	rs2801626		TCGA-OR-A5JV-01A-11D-A29I-10	TCGA-OR-A5JV-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	242948fe-72e8-4487-b3b0-139297360446	b7c4c670-624d-4278-a166-779e9c35cb9e	.	NUDT10-90	NM_153183	exon2	c.G207A	p.E69E	CGAAGAGGCGGGA	.	129	6	72	0	.	4	1	3	0	0	A	51076024	G	A	51076024	2	1	22	1	0	0	0	0	0	0	0	1	10755	991	35	3		3	NUDT10	23	51076024	Silent	SNP	G	TCGA-OR-A5JV-01A-11D-A29I-10	3157600	51076024	104194536	72	3856										
RBMX	27316	ucsc.edu	37	chrX	135961560	135961560	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	ttaagcccaccaatgaagagCtttcctgggcgatctgcttc	9	12	1	2	rs80321628		TCGA-OR-A5JV-01A-11D-A29I-10	TCGA-OR-A5JV-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	242948fe-72e8-4487-b3b0-139297360446	b7c4c670-624d-4278-a166-779e9c35cb9e	.	RBMX-131	NM_001164803	exon2	c.G27C	p.K9N	GAAGAGCTTTCCT	.	133	22	73	5	.	106	106	0	0	0	G	135961560	C	G	135961560	3	3	22	1	0	0	0	0	1	0	0	0	13186	796	28	3	1235	3	RBMX	23	135961560	Missense_Mutation	SNP	C	TCGA-OR-A5JV-01A-11D-A29I-10	84885536	135961560	19309000	73	3857										
SPRR2F	6705	broad.mit.edu	37	chr1	153085135	153085135	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0277777777777778	3	1	0.679884453781513	1.65114795918367	0.312379343629344	1	1	0	cacttcgggggtggacatggCtctgggcactttggcgcggg	18	10	1	0	novel		TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	SPRR2F-68	NM_001014450	exon2	c.G75A	p.E25E	ACATGGCTCTGGG	.	71	11	49	1	.	0	0	0	0	0	T	153085135	C	T	153085135	2	4	23	1	0	0	0	0	0	0	0	1	15138	796	28	3		3	SPRR2F	1	153085135	Silent	SNP	C	TCGA-OR-A5JW-01A-11D-A29I-10		153085135	96165486	1	3858										
C1orf105	92346	bcgsc.ca	37	chr1	172431333	172431333	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0277777777777778	3	1	0.679884453781513	1.65114795918367	0.312379343629344	1	1	0	ttgaggtacaaccaagaacaAtgaaaatcccagatgatcca	7	9	0	5	rs16844498	byfrequency	TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	C1orf105-69	NM_139240	exon5	c.A289G	p.M97V	AGAACAATGAAAA	.	189	7	298	0	A|0.949;G|0.051	1	1	0	0	0	G	172431333	A	G	172431333	3	3	23	1	0	0	0	0	1	0	0	0	1985	101	4	4	307	4	C1orf105	1	172431333	Missense_Mutation	SNP	A	TCGA-OR-A5JW-01A-11D-A29I-10	19346198	172431333	76819288	2	3859										
PLEKHA6	22874	bcgsc.ca	37	chr1	204242838	204242838	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0277777777777778	3	1	0.679884453781513	1.65114795918367	0.312379343629344	1	1	0	gtggtagccgggcgtttcccAcctgttttattggacatgtc	12	10	0	0	rs33911350	byfrequency	TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	PLEKHA6-654	NM_014935	exon3	c.T18G	p.G6G	TTTCCCACCTGTT	.	124	8	123	4	A|0.831;C|0.169	0	0	0	0	0	C	204242838	A	C	204242838	2	2	23	1	0	0	0	0	0	0	0	1	12089	146	6	5		5	PLEKHA6	1	204242838	Silent	SNP	A	TCGA-OR-A5JW-01A-11D-A29I-10	31811505	204242838	45007783	3	3860										
DNAH6	1768	broad.mit.edu;bcgsc.ca	37	chr2	84945469	84945469	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0277777777777778	3	1	0.679884453781513	1.65114795918367	0.312379343629344	1	1	0	acctctgaaggaaatattctGgacaatgaagaacttattga	8	6	2	4	rs1192344	byfrequency	TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	DNAH6-69	NM_001370	exon59	c.G9753A	p.L3251L	TATTCTGGACAAT	.	58	5	85	0	G|0.933;A|0.067	1	1	0	0	0	A	84945469	G	A	84945469	2	1	23	1	0	0	0	0	0	0	0	1	4616	1335	47	3		3	DNAH6	2	84945469	Silent	SNP	G	TCGA-OR-A5JW-01A-11D-A29I-10		84945469	158253904	4	3861										
ANKRD44	91526	bcgsc.ca	37	chr2	198001319	198001319	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0277777777777778	3	1	0.679884453781513	1.65114795918367	0.312379343629344	1	1	0	atatggtaatcactcacttcActtctggaagcaacagcccg	7	12	4	0	rs3731569	byfrequency	TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	ANKRD44-230	NM_153697	exon4	c.T258C	p.S86S	CACTTCACTTCTG	.	51	5	68	0	A|0.672;G|0.328	0	0	0	0	0	G	198001319	A	G	198001319	2	3	23	1	0	0	0	0	0	0	0	1	672	156	6	4		4	ANKRD44	2	198001319	Silent	SNP	A	TCGA-OR-A5JW-01A-11D-A29I-10	113055850	198001319	45198054	5	3862										
IL17RE	132014	bcgsc.ca	37	chr3	9956279	9956279	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0277777777777778	3	1	0.679884453781513	1.65114795918367	0.312379343629344	1	1	0	tggaagcacctcttgtgtccGgatggtgagttcttggggag	16	7	2	1	rs455863	byfrequency	TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	IL17RE-90	NM_001193380	exon14	c.G1417A	p.G473R	GTGTCCGGATGGT	.	101	5	108	0	A|0.424;C|0.006	0	0	0	0	0	A	9956279	G	A	9956279	3	1	23	1	0	0	0	0	1	0	0	0	7664	1103	39	1	1398	1	IL17RE	3	9956279	Missense_Mutation	SNP	G	TCGA-OR-A5JW-01A-11D-A29I-10		9956279	188066151	6	3863										
ACVR2B	93	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	38519421	38519421	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0277777777777778	3	1	0.679884453781513	1.65114795918367	0.312379343629344	1	1	0	tgtgaaggcaacttctgcaaCgaacgcttcactcatttgcc	8	12	3	1	novel		TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	ACVR2B-942	NM_001106	exon3	c.C330T	p.N110N	CTGCAACGAACGC	.	215	175	225	0	.	1	0	1	0	0	T	38519421	C	T	38519421	2	4	23	1	0	0	0	0	0	0	0	1	224	535	19	1		1	ACVR2B	3	38519421	Silent	SNP	C	TCGA-OR-A5JW-01A-11D-A29I-10	28563142	38519421	159503009	7	3864										
KIF15	56992	broad.mit.edu;bcgsc.ca	37	chr3	44856506	44856506	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0277777777777778	3	1	0.679884453781513	1.65114795918367	0.312379343629344	1	1	0	tcattcaaaacgaatcaggaGaaagaattcaacaaactttc	5	8	4	2	rs34058914	byfrequency	TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	KIF15-91	NM_020242	exon20	c.G2487C	p.E829D	TCAGGAGAAAGAA	.	60	5	80	0	G|0.998;C|0.002	1	1	0	0	0	C	44856506	G	C	44856506	3	2	23	1	0	0	0	0	1	0	0	0	8298	933	33	3	2565	3	KIF15	3	44856506	Missense_Mutation	SNP	G	TCGA-OR-A5JW-01A-11D-A29I-10	6337085	44856506	153165924	8	3865										
OR5H2	79310	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	98001912	98001912	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0277777777777778	3	1	0.679884453781513	1.65114795918367	0.312379343629344	1	1	0	tctggaatgacccacaacttCacatccccatgtactttttt	4	13	2	1	novel		TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	OR5H2-71	NM_001005482	exon1	c.C181A	p.H61N	CAACTTCACATCC	.	162	120	181	0	.	0	0	0	0	0	A	98001912	C	A	98001912	3	1	23	1	0	0	0	0	1	0	0	0	11191	826	29	3	183	3	OR5H2	3	98001912	Missense_Mutation	SNP	C	TCGA-OR-A5JW-01A-11D-A29I-10	53145406	98001912	100020518	9	3866										
MYH15	22989	bcgsc.ca	37	chr3	108188993	108188993	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0277777777777778	3	1	0.679884453781513	1.65114795918367	0.312379343629344	1	1	0	ttgctccagaacaaacatgtGccaattgaagaattgttgta	8	7	0	3	rs9868484	byfrequency	TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	MYH15-73	NM_014981	exon15	c.C1510T	p.H504Y	ACATGTGCCAATT	.	171	8	193	2	G|0.424;A|0.576	0	0	0	0	0	A	108188993	G	A	108188993	3	1	23	1	0	0	0	0	1	0	0	0	10062	1319	46	3	4442	3	MYH15	3	108188993	Missense_Mutation	SNP	G	TCGA-OR-A5JW-01A-11D-A29I-10	10187081	108188993	89833437	10	3867										
TMEM108	66000	ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	133098806	133098806	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0277777777777778	3	1	0.679884453781513	1.65114795918367	0.312379343629344	1	1	0	tgcagctcccatggcaacacCgacaccccgtgcagaggggc	12	16	0	1	rs34111099	byfrequency	TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	TMEM108-94	NM_023943	exon4	c.C251T	p.P84L	CAACACCGACACC	.	175	128	166	0	C|0.953;T|0.047	3	0	3	0	0	T	133098806	C	T	133098806	3	4	23	1	0	0	0	0	1	0	0	0	16061	652	23	1	257	1	TMEM108	3	133098806	Missense_Mutation	SNP	C	TCGA-OR-A5JW-01A-11D-A29I-10	24909813	133098806	64923624	11	3868										
SKIL	6498	bcgsc.ca	37	chr3	170078232	170078232	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0277777777777778	3	1	0.679884453781513	1.65114795918367	0.312379343629344	1	1	0	aatgataacggacattcatgCaaatggaaaaacgataaaca	7	6	1	1	rs3772173	byfrequency	TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	SKIL-228	NM_001248008	exon1	c.C113T	p.A38V	TTCATGCAAATGG	.	210	8	262	2	C|0.286;T|0.714	12	12	0	0	0	T	170078232	C	T	170078232	3	4	23	1	0	0	0	0	1	0	0	0	14393	710	25	3	115	3	SKIL	3	170078232	Missense_Mutation	SNP	C	TCGA-OR-A5JW-01A-11D-A29I-10	36979426	170078232	27944198	12	3869										
TNK2	10188	hgsc.bcm.edu	37	chr3	195594805	195594805	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0277777777777778	3	1	0.679884453781513	1.65114795918367	0.312379343629344	1	1	0	ggaggcacccggggaggggaAgcaggtccaggccactggct	19	11	0	0	rs1056749	byfrequency	TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	TNK2-957	NM_001010938	exon13	c.T2553C	p.A851A	AGGGGAAGCAGGT	.	5	5	1	0	A|0.886;G|0.114	5	0	5	0	0	G	195594805	A	G	195594805	2	3	23	1	0	0	0	0	0	0	0	1	16355	59	3	4		4	TNK2	3	195594805	Silent	SNP	A	TCGA-OR-A5JW-01A-11D-A29I-10	25516573	195594805	2427625	13	3870										
CRIPAK	285464	hgsc.bcm.edu	37	chr4	1389070	1389070	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0277777777777778	3	1	0.679884453781513	1.65114795918367	0.312379343629344	1	1	0	ctgctcacgtgccgatgtggAgtgcccgcctgctcacacgt	12	15	2	0	rs151096093	byfrequency	TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	CRIPAK-90	NM_175918	exon1	c.A771G	p.G257G	ATGTGGAGTGCCC	.	76	27	2	0	A|0.981;G|0.019	5	2	3	0	0	G	1389070	A	G	1389070	2	3	23	1	0	0	0	0	0	0	0	1	3883	291	11	4		4	CRIPAK	4	1389070	Silent	SNP	A	TCGA-OR-A5JW-01A-11D-A29I-10		1389070	189765206	14	3871										
KIAA1211	57482	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	chr4	57181586	57181586	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0277777777777778	3	1	0.679884453781513	1.65114795918367	0.312379343629344	1	1	0	cagctggggagaaccctcccCgaggccccggcgacgcgagg	16	16	0	1	novel		TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	KIAA1211-70	NM_020722	exon8	c.C1918T	p.R640X	CCTCCCCGAGGCC	.	80	42	12	0	.	0	0	0	0	0	T	57181586	C	T	57181586	4	4	23	1	0	0	0	0	0	1	0	0	8236	644	23	1	1936	1	KIAA1211	4	57181586	Nonsense_Mutation	SNP	C	TCGA-OR-A5JW-01A-11D-A29I-10	55792516	57181586	133972690	15	3872										
TKTL2	84076	broad.mit.edu;bcgsc.ca	37	chr4	164393463	164393463	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0277777777777778	3	1	0.679884453781513	1.65114795918367	0.312379343629344	1	1	0	cagtttctggttggctggttCgaatgaagcacattcccttg	11	9	1	1	novel		TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	TKTL2-95	NM_032136	exon1	c.G1424A	p.R475Q	CTGGTTCGAATGA	.	111	44	69	2	.	0	0	0	0	0	T	164393463	C	T	164393463	3	4	23	1	0	0	0	0	1	0	0	0	15973	884	31	1	460	1	TKTL2	4	164393463	Missense_Mutation	SNP	C	TCGA-OR-A5JW-01A-11D-A29I-10	107211877	164393463	26760813	16	3873										
KIF3A	11127	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	132069983	132069983	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0277777777777778	3	1	0.679884453781513	1.65114795918367	0.312379343629344	1	1	0	tactctctggtccaaaaacaGtatcaaaagtaaatgtcttt	5	8	3	0	novel		TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	KIF3A-91	NM_007054	exon2	c.C194A	p.T65N	AAAACAGTATCAA	.	279	74	159	2	.	20	16	4	0	0	T	132069983	G	T	132069983	3	4	23	1	0	0	0	0	1	0	0	0	8321	1029	36	3	1969	3	KIF3A	5	132069983	Missense_Mutation	SNP	G	TCGA-OR-A5JW-01A-11D-A29I-10		132069983	48845277	17	3874										
ARL10	285598	hgsc.bcm.edu	37	chr5	175792605	175792605	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0277777777777778	3	1	0.679884453781513	1.65114795918367	0.312379343629344	1	1	0	ggccccttggtgctggcgctGggcggcgccgcggcggtgct	20	14	0	0	rs2303667		TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	ARL10-91	NM_173664	exon1	c.G39C	p.L13L	GGCGCTGGGCGGC	.	5	4	0	0	G|0.585;C|0.415	0	0	0	0	0	C	175792605	G	C	175792605	2	2	23	1	0	0	0	0	0	0	0	1	926	1335	47	3		3	ARL10	5	175792605	Silent	SNP	G	TCGA-OR-A5JW-01A-11D-A29I-10	43722622	175792605	5122655	18	3875										
VARS	7407	hgsc.bcm.edu	37	chr6	31762843	31762843	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0277777777777778	3	1	0.679884453781513	1.65114795918367	0.312379343629344	1	1	0	gcaggcggggtgggggaaagGgagtcctgctagtcgggggt	23	6	0	0	rs67600122	alternate_allele	TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	VARS-93	NM_006295	exon2	c.C152G	p.P51R	GGAAAGGGAGTCC	.	8	4	2	0	CT|0.500;GG|0.500	4	4	0	0	0	C	31762843	G	C	31762843	3	2	23	1	0	0	0	0	1	0	0	0	17161	1232	43	3	3758	3	VARS	6	31762843	Missense_Mutation	SNP	G	TCGA-OR-A5JW-01A-11D-A29I-10		31762843	139352224	19	3876										
C6orf222	389384	broad.mit.edu;bcgsc.ca	37	chr6	36298316	36298316	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0277777777777778	3	1	0.679884453781513	1.65114795918367	0.312379343629344	1	1	0	gtctggcccaatcactggtcGtccagtgaagcgccttcctg	11	14	2	1	rs74561471	byfrequency	TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	C6orf222-93	NM_001010903	exon2	c.C152T	p.T51M	CTGGTCGTCCAGT	.	88	6	35	0	G|0.998;A|0.002	0	0	0	0	0	A	36298316	G	A	36298316	3	1	23	1	0	0	0	0	1	0	0	0	2362	1145	40	1	1850	1	C6orf222	6	36298316	Missense_Mutation	SNP	G	TCGA-OR-A5JW-01A-11D-A29I-10	4535473	36298316	134816751	20	3877										
KCNK17	89822	hgsc.bcm.edu	37	chr6	39282036	39282036	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0277777777777778	3	1	0.679884453781513	1.65114795918367	0.312379343629344	1	1	0	gagcagcaggagcacggtgcTgggcaccgcgcagccccgga	17	14	0	0	rs10947804	byfrequency	TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	KCNK17-227	NM_001135111	exon1	c.A61G	p.S21G	CGGTGCTGGGCAC	.	21	21	0	0	T|0.441;C|0.559	0	0	0	0	0	C	39282036	T	C	39282036	3	2	23	1	0	0	0	0	1	0	0	0	8085	1580	55	4	1089	4	KCNK17	6	39282036	Missense_Mutation	SNP	T	TCGA-OR-A5JW-01A-11D-A29I-10	2983720	39282036	131833031	21	3878										
PEX6	5190	hgsc.bcm.edu	37	chr6	42946490	42946490	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0277777777777778	3	1	0.679884453781513	1.65114795918367	0.312379343629344	1	1	0	tccagcacccgcggtccgggCactgggagggtctctccgcg	15	16	1	0	rs9462858	byfrequency	TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	PEX6-91	NM_000287	exon1	c.G399T	p.V133V	TCCGGGCACTGGG	.	6	6	0	0	C|0.673;A|0.327	19	0	19	0	0	A	42946490	C	A	42946490	2	1	23	1	0	0	0	0	0	0	0	1	11779	697	25	3		3	PEX6	6	42946490	Silent	SNP	C	TCGA-OR-A5JW-01A-11D-A29I-10	3664454	42946490	128168577	22	3879										
NDUFAF4	29078	bcgsc.ca	37	chr6	97339126	97339126	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0277777777777778	3	1	0.679884453781513	1.65114795918367	0.312379343629344	1	1	0	agtccaggtttctgggaaaaGcttatgattattgagaagtg	12	4	1	2	novel		TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	NDUFAF4-91	NM_014165	exon3	c.C382A	p.L128I	GGAAAAGCTTATG	.	57	5	43	0	.	146	146	0	0	0	T	97339126	G	T	97339126	3	4	23	1	0	0	0	0	1	0	0	0	10306	971	34	3	149	3	NDUFAF4	6	97339126	Missense_Mutation	SNP	G	TCGA-OR-A5JW-01A-11D-A29I-10	54392636	97339126	73775941	23	3880										
TFB1M	51106	bcgsc.ca	37	chr6	155606325	155606325	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0277777777777778	3	1	0.679884453781513	1.65114795918367	0.312379343629344	1	1	0	acaaaagcttgtcctggaatCgtaaagatgtgtcgaacatt	9	7	0	1	rs324356	byfrequency	TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	TFB1M-91	NM_016020	exon5	c.G633A	p.T211T	TGGAATCGTAAAG	.	296	8	148	1	C|0.338;T|0.662	30	30	0	0	0	T	155606325	C	T	155606325	2	4	23	1	0	0	0	0	0	0	0	1	15830	871	31	1		1	TFB1M	6	155606325	Silent	SNP	C	TCGA-OR-A5JW-01A-11D-A29I-10	58267199	155606325	15508742	24	3881										
PRPS1L1	221823	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	18066907	18066907	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0277777777777778	3	1	0.679884453781513	1.65114795918367	0.312379343629344	1	1	0	accagcatctggcgagacaaTaatgcagttcttccactcag	8	12	3	1	novel		TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	PRPS1L1-1	NM_175886	exon1	c.A499T	p.I167F	AGACAATAATGCA	.	260	86	166	1	.	0	0	0	0	0	A	18066907	T	A	18066907	3	1	23	1	0	0	0	0	1	0	0	0	12611	1406	49	5	461	5	PRPS1L1	7	18066907	Missense_Mutation	SNP	T	TCGA-OR-A5JW-01A-11D-A29I-10		18066907	141071756	25	3882										
NPC1L1	29881	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	44560705	44560705	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0277777777777778	3	1	0.679884453781513	1.65114795918367	0.312379343629344	1	1	0	tgctcatgcagttctttaggCagttcagagagtctgcagag	12	8	4	2	novel		TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	NPC1L1-94	NM_001101648	exon13	c.G2966C	p.C989S	TTTAGGCAGTTCA	.	121	51	71	0	.	1	1	0	0	0	G	44560705	C	G	44560705	3	3	23	1	0	0	0	0	1	0	0	0	10600	710	25	3	1145	3	NPC1L1	7	44560705	Missense_Mutation	SNP	C	TCGA-OR-A5JW-01A-11D-A29I-10	26493798	44560705	114577958	26	3883										
AKAP9	10142	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	91646396	91646396	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0277777777777778	3	1	0.679884453781513	1.65114795918367	0.312379343629344	1	1	0	aatacaacaaactcttggtaCttcaaacacgactaagcaag	5	10	2	0	novel		TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	AKAP9-755	NM_005751	exon12	c.C3817A	p.L1273I	TTGGTACTTCAAA	.	237	78	155	0	.	8	4	4	0	0	A	91646396	C	A	91646396	3	1	23	1	0	0	0	0	1	0	0	0	459	565	20	3	3863	3	AKAP9	7	91646396	Missense_Mutation	SNP	C	TCGA-OR-A5JW-01A-11D-A29I-10	47085691	91646396	67492267	27	3884										
GPR37	2861	bcgsc.ca	37	chr7	124386757	124386757	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0277777777777778	3	1	0.679884453781513	1.65114795918367	0.312379343629344	1	1	0	ccatgaaggcccgactgaagGgtttgcagagacagaaaagg	14	8	0	4	novel		TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	GPR37-523	NM_005302	exon2	c.C1664T	p.P555L	CTGAAGGGTTTGC	.	182	53	157	4	.	0	0	0	0	0	A	124386757	G	A	124386757	3	1	23	1	0	0	0	0	1	0	0	0	6711	1232	43	3	181	3	GPR37	7	124386757	Missense_Mutation	SNP	G	TCGA-OR-A5JW-01A-11D-A29I-10	32740361	124386757	34751906	28	3885										
NSMAF	8439	hgsc.bcm.edu	37	chr8	59571856	59571856	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0277777777777778	3	1	0.679884453781513	1.65114795918367	0.312379343629344	1	1	0	gccgggacctgcactgccggAtagctcggcatgcctcggct	14	15	0	0	rs59606339	byfrequency	TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	NSMAF-91	NM_001144772	exon1	c.T50G	p.I17S	TGCCGGATAGCTC	.	13	13	4	0	A|0.754;C|0.246	0	0	0	0	0	C	59571856	A	C	59571856	3	2	23	1	0	0	0	0	1	0	0	0	10703	333	12	5	2920	5	NSMAF	8	59571856	Missense_Mutation	SNP	A	TCGA-OR-A5JW-01A-11D-A29I-10		59571856	86792166	29	3886										
ERMP1	79956	hgsc.bcm.edu	37	chr9	5832728	5832728	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0277777777777778	3	1	0.679884453781513	1.65114795918367	0.312379343629344	1	1	0	aactccccgcggtgtccagcGgccccgcgtagcacgagctg	13	17	0	0	rs1131727	byfrequency	TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	ERMP1-69	NM_024896	exon1	c.C300G	p.A100A	TCCAGCGGCCCCG	.	27	27	0	0	G|0.572;C|0.428	5	0	5	0	0	C	5832728	G	C	5832728	2	2	23	1	0	0	0	0	0	0	0	1	5249	1103	39	2		2	ERMP1	9	5832728	Silent	SNP	G	TCGA-OR-A5JW-01A-11D-A29I-10		5832728	135380703	30	3887										
KDM4C	23081	bcgsc.ca	37	chr9	7046901	7046901	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0277777777777778	3	1	0.679884453781513	1.65114795918367	0.312379343629344	1	1	0	tgagaggaggtgctcttaagCaaacgaagaacaataagtaa	11	5	1	2	rs1407856	byfrequency	TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	KDM4C-228	NM_001146696	exon16	c.C2365G	p.Q789E	CTTAAGCAAACGA	.	138	5	102	0	C|0.685;G|0.315	17	17	0	0	0	G	7046901	C	G	7046901	3	3	23	1	0	0	0	0	1	0	0	0	8151	711	25	3	2427	3	KDM4C	9	7046901	Missense_Mutation	SNP	C	TCGA-OR-A5JW-01A-11D-A29I-10	1214173	7046901	134166530	31	3888										
MLLT3	4300	broad.mit.edu	37	chr9	20414344	20414345	+	In_Frame_Ins	INS	-	-	TGC													0.0277777777777778	3	1	0.679884453781513	1.65114795918367	0.312379343629344	1	1	0	gctgctgctgctgctgctacINStgctgctgctgctgctgctg					novel		TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	MLLT3-660	NM_004529	exon5	c.500_501insGCA	p.S167delinsSS	CTGCTACTGCTGC	.	39	9	20	0	.	0	0	0	0	0	TGC	20414345	-	TGC	20414344	7	5	23	1	0	1	1	0	0	0	0	0	9656	565	20	0	1234	0	MLLT3	9	20414344	In_Frame_Ins	INS	-	TCGA-OR-A5JW-01A-11D-A29I-10	13367443	20414344	120799087	32	3889										
AKAP2	11217	hgsc.bcm.edu	37	chr9	112811038	112811038	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0277777777777778	3	1	0.679884453781513	1.65114795918367	0.312379343629344	1	1	0	cccggagtctcctggaccccCggagtctcctggacccccgg	12	19	2	0	rs78923754	byfrequency	TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	AKAP2-24	NM_001004065	exon1	c.C59T	p.P20L	GACCCCCGGAGTC	.	20	19	0	0	C|0.917;T|0.083	1	0	1	0	0	T	112811038	C	T	112811038	3	4	23	1	0	0	0	0	1	0	0	0	451	652	23	1	61	1	AKAP2	9	112811038	Missense_Mutation	SNP	C	TCGA-OR-A5JW-01A-11D-A29I-10	92396694	112811038	28402393	33	3890										
DBC1	1620	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	121929775	121929775	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0277777777777778	3	1	0.679884453781513	1.65114795918367	0.312379343629344	1	1	0	atttcgcagtagggtaggtaGccgagtccgactacgtaggt	14	8	0	0	novel		TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	DBC1-582	NM_014618	exon8	c.C1873A	p.L625I	TAGGTAGCCGAGT	.	346	294	257	1	.	1	0	1	0	0	T	121929775	G	T	121929775	3	4	23	1	0	0	0	0	1	0	0	0	4253	962	34	3	416	3	DBC1	9	121929775	Missense_Mutation	SNP	G	TCGA-OR-A5JW-01A-11D-A29I-10	9118737	121929775	19283656	34	3891										
PTPLA	9200	hgsc.bcm.edu	37	chr10	17659149	17659149	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.0277777777777778	3	1	0.679884453781513	1.65114795918367	0.312379343629344	1	1	0	gacccccaggcgcctccgctCgccgggagcctcccggtcct	12	21	0	0	rs7895850	byfrequency	TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	PTPLA-226	NM_014241	exon1	c.G190C	p.E64Q	TCCGCTCGCCGGG	.	26	15	2	0	C|0.007;G|0.002;T|0.991	4	0	1	0	3	G	17659149	C	G	17659149	3	3	23	1	0	0	0	0	1	0	0	0	12807	893	31	2	704	2	PTPLA	10	17659149	Missense_Mutation	SNP	C	TCGA-OR-A5JW-01A-11D-A29I-10		17659149	117875598	35	3892										
ALOX5	240	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr10	45938628	45938628	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0277777777777778	3	1	0.679884453781513	1.65114795918367	0.312379343629344	1	1	0	catcccctactacttctaccGggacgacgggctcctggtgt	10	15	1	0	novel		TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	ALOX5-228	NM_000698	exon10	c.G1415T	p.R472L	TCTACCGGGACGA	.	299	126	140	0	.	3	3	0	0	0	T	45938628	G	T	45938628	3	4	23	1	0	0	0	0	1	0	0	0	540	1116	39	2	1453	2	ALOX5	10	45938628	Missense_Mutation	SNP	G	TCGA-OR-A5JW-01A-11D-A29I-10	28279479	45938628	89596119	36	3893										
GPRIN2	9721	hgsc.bcm.edu	37	chr10	47000217	47000217	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0277777777777778	3	1	0.679884453781513	1.65114795918367	0.312379343629344	1	1	0	tgtcatgcagtccctgcggcGccccagctgctgcggctgct	13	16	1	0	rs72780221	byfrequency	TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	GPRIN2-90	NM_014696	exon3	c.G1337A	p.R446H	TGCGGCGCCCCAG	.	37	8	0	0	G|0.901;A|0.099	0	0	0	0	0	A	47000217	G	A	47000217	3	1	23	1	0	0	0	0	1	0	0	0	6751	1087	38	1	1339	1	GPRIN2	10	47000217	Missense_Mutation	SNP	G	TCGA-OR-A5JW-01A-11D-A29I-10	1061589	47000217	88534530	37	3894										
PANK1	53354	hgsc.bcm.edu	37	chr10	91404832	91404832	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0277777777777778	3	1	0.679884453781513	1.65114795918367	0.312379343629344	1	1	0	gccgactcccccacctcctcTgcgccctgccccccgcgcgc	8	26	1	0	rs12769113	byfrequency	TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	PANK1-90	NM_148977	exon1	c.A228G	p.A76A	CTCCTCTGCGCCC	.	6	6	0	0	T|0.708;C|0.292	0	0	0	0	0	C	91404832	T	C	91404832	2	2	23	1	0	0	0	0	0	0	0	1	11445	1567	55	4		4	PANK1	10	91404832	Silent	SNP	T	TCGA-OR-A5JW-01A-11D-A29I-10	44404615	91404832	44129915	38	3895										
PCGF5	84333	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr10	93024204	93024204	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0277777777777778	3	1	0.679884453781513	1.65114795918367	0.312379343629344	1	1	0	aaagttggatgtgctgtgcaAtggtgaaattatggggaagg	16	2	0	1	novel		TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	PCGF5-226	NM_001256549	exon8	c.A590G	p.N197S	TGTGCAATGGTGA	.	99	40	60	0	.	45	25	20	0	0	G	93024204	A	G	93024204	3	3	23	1	0	0	0	0	1	0	0	0	11606	101	4	4	616	4	PCGF5	10	93024204	Missense_Mutation	SNP	A	TCGA-OR-A5JW-01A-11D-A29I-10	1619372	93024204	42510543	39	3896										
MUC2	4583	bcgsc.ca	37	chr11	1093311	1093311	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0277777777777778	3	1	0.679884453781513	1.65114795918367	0.312379343629344	1	1	0	accactacggtgaccccaacCccaacacccaccggcacaca	5	21	0	1	novel		TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	MUC2-90	NM_002457	exon30	c.C5130A	p.T1710T	CCCAACCCCAACA	.	73	16	85	8	.	0	0	0	0	0	A	1093311	C	A	1093311	2	1	23	1	0	0	0	0	0	0	0	1	10003	610	22	3		3	MUC2	11	1093311	Silent	SNP	C	TCGA-OR-A5JW-01A-11D-A29I-10		1093311	133913205	40	3897										
MUC2	4583	bcgsc.ca	37	chr11	1093375	1093375	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0277777777777778	3	1	0.679884453781513	1.65114795918367	0.312379343629344	1	1	0	ccaccaccactacggtgaccCcaaccccaacacccaccggc	5	23	0	1	novel		TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	MUC2-90	NM_002457	exon30	c.C5194T	p.P1732S	GTGACCCCAACCC	.	110	11	101	3	.	0	0	0	0	0	T	1093375	C	T	1093375	3	4	23	1	0	0	0	0	1	0	0	0	10003	623	22	3	5312	3	MUC2	11	1093375	Missense_Mutation	SNP	C	TCGA-OR-A5JW-01A-11D-A29I-10	64	1093375	133913141	41	3898										
MUC5B	727897	hgsc.bcm.edu	37	chr11	1253980	1253980	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0277777777777778	3	1	0.679884453781513	1.65114795918367	0.312379343629344	1	1	0	caagggcgtacagctcagcgActggagggacggcgtctgca	16	11	2	0	rs202127660		TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	.	NM_002458	exon17	c.A2045G	p.D682G	TCAGCGACTGGAG	.	121	8	23	0	.	0	0	0	0	0	G	1253980	A	G	1253980	3	3	23	1	0	0	0	0	1	0	0	0	10007	275	10	4	2120	4	MUC5B	11	1253980	Missense_Mutation	SNP	A	TCGA-OR-A5JW-01A-11D-A29I-10	160605	1253980	133752536	42	3899										
KRTAP5-5	439915	bcgsc.ca	37	chr11	1651646	1651646	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0277777777777778	3	1	0.679884453781513	1.65114795918367	0.312379343629344	1	1	0	tccagctgctgtaagccctaCtgctgccagtccagctgctg	10	15	0	0	novel		TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	KRTAP5-5-23	NM_001001480	exon1	c.C576T	p.Y192Y	GCCCTACTGCTGC	.	138	13	124	0	.	0	0	0	0	0	T	1651646	C	T	1651646	2	4	23	1	0	0	0	0	0	0	0	1	8586	576	20	3		3	KRTAP5-5	11	1651646	Silent	SNP	C	TCGA-OR-A5JW-01A-11D-A29I-10	397666	1651646	133354870	43	3900										
OR51T1	401665	broad.mit.edu	37	chr11	4903672	4903672	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0277777777777778	3	1	0.679884453781513	1.65114795918367	0.312379343629344	1	1	0	gagctttcccatccattttgCtaccacccagaagtgatcaa	6	13	1	2	novel		TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	OR51T1-115	NM_001004759	exon1	c.C624A	p.C208X	ATTTTGCTACCAC	.	141	7	169	0	.	0	0	0	0	0	A	4903672	C	A	4903672	4	1	23	1	0	0	0	0	0	1	0	0	11135	805	28	3	626	3	OR51T1	11	4903672	Nonsense_Mutation	SNP	C	TCGA-OR-A5JW-01A-11D-A29I-10	3252026	4903672	130102844	44	3901										
OR51G2	81282	bcgsc.ca	37	chr11	4936721	4936721	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0277777777777778	3	1	0.679884453781513	1.65114795918367	0.312379343629344	1	1	0	acataggttcatgaagtgagCgctctgttttaatgataaaa	9	5	2	3	rs60718970	byfrequency	TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	OR51G2-70	NM_001005238	exon1	c.G173A	p.R58H	AGTGAGCGCTCTG	.	124	6	149	0	C|0.986;T|0.014	0	0	0	0	0	T	4936721	C	T	4936721	3	4	23	1	0	0	0	0	1	0	0	0	11128	768	27	1	775	1	OR51G2	11	4936721	Missense_Mutation	SNP	C	TCGA-OR-A5JW-01A-11D-A29I-10	33049	4936721	130069795	45	3902										
TPCN2	219931	bcgsc.ca	37	chr11	68855363	68855363	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0277777777777778	3	1	0.679884453781513	1.65114795918367	0.312379343629344	1	1	0	ggatattctggaggagcccgGggaggatgagctcacagaga	17	7	2	2	rs3829241	byfrequency	TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	TPCN2-90	NM_139075	exon25	c.G2201A	p.G734E	AGCCCGGGGAGGA	.	61	5	94	0	G|0.756;A|0.244	4	4	0	0	0	A	68855363	G	A	68855363	3	1	23	1	0	0	0	0	1	0	0	0	16434	1232	43	3	2299	3	TPCN2	11	68855363	Missense_Mutation	SNP	G	TCGA-OR-A5JW-01A-11D-A29I-10	63918642	68855363	66151153	46	3903										
MMP8	4317	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	102595542	102595542	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0277777777777778	3	1	0.679884453781513	1.65114795918367	0.312379343629344	1	1	0	ggaaaggccttggaaatctgCacatggagtaagagcagaaa	13	6	1	2	novel		TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	MMP8-229	NM_002424	exon1	c.G45T	p.V15V	AATCTGCACATGG	.	99	16	166	0	.	0	0	0	0	0	A	102595542	C	A	102595542	2	1	23	1	0	0	0	0	0	0	0	1	9696	697	25	3		3	MMP8	11	102595542	Silent	SNP	C	TCGA-OR-A5JW-01A-11D-A29I-10	33740179	102595542	32410974	47	3904										
PCSK7	9159	ucsc.edu;bcgsc.ca	37	chr11	117077034	117077034	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0277777777777778	3	1	0.679884453781513	1.65114795918367	0.312379343629344	1	1	0	acttccagcatgtagtaaacAgtccagaagacggtgaaaca	9	9	0	3	rs28590104	byfrequency	TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	PCSK7-658	NM_004716	exon17	c.T2037C	p.T679T	GTAAACAGTCCAG	.	50	7	63	2	A|0.563;G|0.437	12	12	0	0	0	G	117077034	A	G	117077034	2	3	23	1	0	0	0	0	0	0	0	1	11634	175	7	4		4	PCSK7	11	117077034	Silent	SNP	A	TCGA-OR-A5JW-01A-11D-A29I-10	14481492	117077034	17929482	48	3905										
CEP164	22897	bcgsc.ca	37	chr11	117266312	117266312	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0277777777777778	3	1	0.679884453781513	1.65114795918367	0.312379343629344	1	1	0	ggaggcacagaaggagcacaCccacctgttgcagtcaaacc	11	13	1	1	rs2305830	byfrequency	TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	CEP164-69	NM_001271933	exon23	c.C2972G	p.T991S	AGCACACCCACCT	.	116	8	115	1	C|0.710;G|0.290	6	6	0	0	0	G	117266312	C	G	117266312	3	3	23	1	0	0	0	0	1	0	0	0	3255	507	18	3	3049	3	CEP164	11	117266312	Missense_Mutation	SNP	C	TCGA-OR-A5JW-01A-11D-A29I-10	189278	117266312	17740204	49	3906										
GRIN2B	2904	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	13716624	13716624	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0277777777777778	3	1	0.679884453781513	1.65114795918367	0.312379343629344	1	1	0	ccacgccgtgtttgtcgcccGtcccgtgcttgatgtgagac	12	14	0	2	novel		TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	GRIN2B-231	NM_000834	exon13	c.C3548T	p.T1183M	TCGCCCGTCCCGT	.	107	47	76	0	.	0	0	0	0	0	A	13716624	G	A	13716624	3	1	23	1	0	0	0	0	1	0	0	0	6801	1145	40	1	910	1	GRIN2B	12	13716624	Missense_Mutation	SNP	G	TCGA-OR-A5JW-01A-11D-A29I-10		13716624	120135271	50	3907										
DDX11	1663	ucsc.edu	37	chr12	31244689	31244689	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0277777777777778	3	1	0.679884453781513	1.65114795918367	0.312379343629344	1	1	0	atcagatgctgctgcatgcgGccactcggcaggccgcgggc	15	14	1	1	novel		TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	DDX11-229	NM_030653	exon10	c.G1126A	p.A376T	CATGCGGCCACTC	.	947	134	272	67	.	6	3	3	0	0	A	31244689	G	A	31244689	3	1	23	1	0	0	0	0	1	0	0	0	4349	1203	42	3	1160	3	DDX11	12	31244689	Missense_Mutation	SNP	G	TCGA-OR-A5JW-01A-11D-A29I-10	17528065	31244689	102607206	51	3908										
KRT83	3889	broad.mit.edu	37	chr12	52709845	52709845	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0277777777777778	3	1	0.679884453781513	1.65114795918367	0.312379343629344	1	1	0	tgcagcgggcatcactgaggGccgcctcaccctgctgctca	12	16	3	1	novel		TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	KRT83-91	NM_002282	exon7	c.C1094A	p.A365D	CTGAGGGCCGCCT	.	130	13	51	3	.	0	0	0	0	0	T	52709845	G	T	52709845	3	4	23	1	0	0	0	0	1	0	0	0	8518	1203	42	3	399	3	KRT83	12	52709845	Missense_Mutation	SNP	G	TCGA-OR-A5JW-01A-11D-A29I-10	21465156	52709845	81142050	52	3909										
OR6C2	341416	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	55846284	55846284	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0277777777777778	3	1	0.679884453781513	1.65114795918367	0.312379343629344	1	1	0	cattacctacaatgcttgtgCcagtcaaatattctttgtta	5	9	2	0	novel		TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	OR6C2-70	NM_054105	exon1	c.C287G	p.A96G	CTTGTGCCAGTCA	.	78	27	66	1	.	0	0	0	0	0	G	55846284	C	G	55846284	3	3	23	1	0	0	0	0	1	0	0	0	11220	739	26	3	289	3	OR6C2	12	55846284	Missense_Mutation	SNP	C	TCGA-OR-A5JW-01A-11D-A29I-10	3136439	55846284	78005611	53	3910										
EEA1	8411	broad.mit.edu;bcgsc.ca	37	chr12	93226501	93226501	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0277777777777778	3	1	0.679884453781513	1.65114795918367	0.312379343629344	1	1	0	gacaatcttgactgaagctgTtgacaatctaggtctttttg	9	7	3	3	novel		TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	EEA1-229	NM_003566	exon11	c.A1041G	p.Q347Q	AAGCTGTTGACAA	.	75	6	86	0	.	13	13	0	0	0	C	93226501	T	C	93226501	2	2	23	1	0	0	0	0	0	0	0	1	4932	1722	60	4		4	EEA1	12	93226501	Silent	SNP	T	TCGA-OR-A5JW-01A-11D-A29I-10	37380217	93226501	40625394	54	3911										
AMDHD1	144193	hgsc.bcm.edu	37	chr12	96337183	96337183	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0277777777777778	3	1	0.679884453781513	1.65114795918367	0.312379343629344	1	1	0	cggcgcgaggcgacatggcaAgcggccacagcctcctgctg	15	15	0	0	rs7955450	byfrequency	TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	AMDHD1-90	NM_152435	exon1	c.A7G	p.S3G	ATGGCAAGCGGCC	.	7	5	0	0	A|0.273;G|0.727	0	0	0	0	0	G	96337183	A	G	96337183	3	3	23	1	0	0	0	0	1	0	0	0	567	72	3	4	9	4	AMDHD1	12	96337183	Missense_Mutation	SNP	A	TCGA-OR-A5JW-01A-11D-A29I-10	3110682	96337183	37514712	55	3912										
AMDHD1	144193	hgsc.bcm.edu	37	chr12	96337225	96337225	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0277777777777778	3	1	0.679884453781513	1.65114795918367	0.312379343629344	1	1	0	agaacgcgcagcaagtggtgCtggtgtgcgcccgcggcgag	18	11	0	1	rs1436121	byfrequency	TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	AMDHD1-90	NM_152435	exon1	c.C49T	p.L17L	GTGGTGCTGGTGT	.	16	11	0	0	C|0.752;T|0.248	0	0	0	0	0	T	96337225	C	T	96337225	2	4	23	1	0	0	0	0	0	0	0	1	567	796	28	3		3	AMDHD1	12	96337225	Silent	SNP	C	TCGA-OR-A5JW-01A-11D-A29I-10	42	96337225	37514670	56	3913										
VSIG10	54621	bcgsc.ca	37	chr12	118506186	118506186	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0277777777777778	3	1	0.679884453781513	1.65114795918367	0.312379343629344	1	1	0	aggaaaaagagcttaccttgAagatcctggaatccatttcc	8	9	0	3	rs67405503	byfrequency	TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	.	NM_019086	exon8	c.T1563A	p.L521L	ACCTTGAAGATCC	.	263	10	168	0	A|0.602;T|0.398	0	0	0	0	0	T	118506186	A	T	118506186	2	4	23	1	0	0	0	0	0	0	0	1	17261	233	9	5		5	VSIG10	12	118506186	Silent	SNP	A	TCGA-OR-A5JW-01A-11D-A29I-10	22168961	118506186	15345709	57	3914										
TAOK3	51347	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	118619354	118619354	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0277777777777778	3	1	0.679884453781513	1.65114795918367	0.312379343629344	1	1	0	ggcgccgcatccgcttataaCctgacatctgttcccgcaac	8	16	1	1	novel		TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	TAOK3-933	NM_016281	exon15	c.G1388A	p.G463D	TTATAACCTGACA	.	237	42	106	1	.	49	42	7	0	0	T	118619354	C	T	118619354	3	4	23	1	0	0	0	0	1	0	0	0	15586	507	18	3	1336	3	TAOK3	12	118619354	Missense_Mutation	SNP	C	TCGA-OR-A5JW-01A-11D-A29I-10	113168	118619354	15232541	58	3915										
LRRC43	254050	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	122684857	122684857	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0277777777777778	3	1	0.679884453781513	1.65114795918367	0.312379343629344	1	1	0	tcctgctggcggggaccaccGtgaccatcgtggaggagaag	16	11	0	2	novel		TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	LRRC43-135	NM_001098519	exon8	c.G1471A	p.V491M	ACCACCGTGACCA	.	193	62	86	0	.	0	0	0	0	0	A	122684857	G	A	122684857	3	1	23	1	0	0	0	0	1	0	0	0	9028	1145	40	1	1501	1	LRRC43	12	122684857	Missense_Mutation	SNP	G	TCGA-OR-A5JW-01A-11D-A29I-10	4065503	122684857	11167038	59	3916										
SACS	26278	bcgsc.ca	37	chr13	23912220	23912220	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0277777777777778	3	1	0.679884453781513	1.65114795918367	0.312379343629344	1	1	0	ccattagctccccactagtgGccaggtcccgtaagacactc	8	16	0	1	novel		TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	SACS-298	NM_014363	exon10	c.C5795A	p.A1932D	CTAGTGGCCAGGT	.	60	4	87	0	.	0	0	0	0	0	T	23912220	G	T	23912220	3	4	23	1	0	0	0	0	1	0	0	0	13839	1203	42	3	7948	3	SACS	13	23912220	Missense_Mutation	SNP	G	TCGA-OR-A5JW-01A-11D-A29I-10		23912220	91257658	60	3917										
DGKH	160851	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr13	42761266	42761289	+	Frame_Shift_Del	DEL	TGATGCCGTGGCCAGTAAAGTAAG	TGATGCCGTGGCCAGTAAAGTAAG	-													0.0277777777777778	3	1	0.679884453781513	1.65114795918367	0.312379343629344	1	1	0	ttggaaaatgccgttgtagcTgatgccgtggccagtaaagt					novel		TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10	TGATGCCGTGGCCAGTAAAGTAAG	TGATGCCGTGGCCAGTAAAGTAAG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	DGKH-652	NM_001204504	exon15	c.1620_1638del	p.540_546del	TGTAGCTGATGCC	.	35	5	142	0	.	0	0	0	0	0	-	42761289	TGATGCCGTGGCCAGTAAAGTAAG	-	42761266	7	5	23	1	0	1	0	1	0	0	0	0	4481	1567	55	0	1674	0	DGKH	13	42761266	Frame_Shift_Del	DEL	TGATGCCGTGGCCAGTAAAGTAAG	TCGA-OR-A5JW-01A-11D-A29I-10	18849046	42761266	72408612	61	3918										
COG3	83548	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr13	46050394	46050394	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0277777777777778	3	1	0.679884453781513	1.65114795918367	0.312379343629344	1	1	0	actgcccattgaactgacttCagtagtgcctgaatctacag	8	11	2	3	novel		TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	COG3-154	NM_031431	exon2	c.C233T	p.S78L	TGACTTCAGTAGT	.	43	28	77	0	.	8	0	8	0	0	T	46050394	C	T	46050394	3	4	23	1	0	0	0	0	1	0	0	0	3665	838	29	3	239	3	COG3	13	46050394	Missense_Mutation	SNP	C	TCGA-OR-A5JW-01A-11D-A29I-10	3289128	46050394	69119484	62	3919										
FBXO33	254170	hgsc.bcm.edu	37	chr14	39901157	39901157	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0277777777777778	3	1	0.679884453781513	1.65114795918367	0.312379343629344	1	1	0	acgatcagctcgctgggcagCgacgcagcgcccgccgcctg	14	17	1	0	rs61999077	byfrequency	TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	FBXO33-658	NM_203301	exon1	c.G210T	p.S70S	GGGCAGCGACGCA	.	4	4	0	0	C|0.935;A|0.065	1	0	1	0	0	A	39901157	C	A	39901157	2	1	23	1	0	0	0	0	0	0	0	1	5762	755	27	2		2	FBXO33	14	39901157	Silent	SNP	C	TCGA-OR-A5JW-01A-11D-A29I-10		39901157	67448383	63	3920										
DDHD1	80821	hgsc.bcm.edu	37	chr14	53619681	53619681	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0277777777777778	3	1	0.679884453781513	1.65114795918367	0.312379343629344	1	1	0	gccgtcgtccgggtccccgcCgggcaggtgctcgaagcagc	16	16	0	0	rs61985140		TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	DDHD1-92	NM_001160147	exon1	c.G136A	p.G46S	CCCCGCCGGGCAG	.	23	22	0	0	C|0.993;T|0.007	1	0	1	0	0	T	53619681	C	T	53619681	3	4	23	1	0	0	0	0	1	0	0	0	4332	652	23	1	2643	1	DDHD1	14	53619681	Missense_Mutation	SNP	C	TCGA-OR-A5JW-01A-11D-A29I-10	13718524	53619681	53729859	64	3921										
CKB	1152	hgsc.bcm.edu	37	chr14	103988180	103988180	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0277777777777778	3	1	0.679884453781513	1.65114795918367	0.312379343629344	1	1	0	accgcgagcttctcgatggcGcggcgctccccgcggctgca	14	17	1	0	rs1136165	byfrequency	TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	CKB-115	NM_001823	exon4	c.C456A	p.R152R	GATGGCGCGGCGC	.	4	4	0	0	G|0.327;T|0.673	7	0	7	0	0	T	103988180	G	T	103988180	2	4	23	1	0	0	0	0	0	0	0	1	3452	1074	38	2		2	CKB	14	103988180	Silent	SNP	G	TCGA-OR-A5JW-01A-11D-A29I-10	50368499	103988180	3361360	65	3922										
C15orf55	256646	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr15	34648579	34648579	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0277777777777778	3	1	0.679884453781513	1.65114795918367	0.312379343629344	1	1	0	caggaaggctgccagggactGggctccaggggcaacatttc	15	11	0	0	novel		TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	C15orf55-206	NM_175741	exon7	c.G2286T	p.L762L	GGGACTGGGCTCC	.	151	65	104	0	.	0	0	0	0	0	T	34648579	G	T	34648579	2	4	23	1	0	0	0	0	0	0	0	1	1807	1335	47	3		3	C15orf55	15	34648579	Silent	SNP	G	TCGA-OR-A5JW-01A-11D-A29I-10		34648579	67882813	66	3923										
CASC5	57082	bcgsc.ca	37	chr15	40915045	40915045	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0277777777777778	3	1	0.679884453781513	1.65114795918367	0.312379343629344	1	1	0	ggaccaaaaattgataagacTattgtattttcagaagacga	8	5	1	4	rs8041534	byfrequency	TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	CASC5-660	NM_170589	exon11	c.T2661G	p.T887T	TAAGACTATTGTA	.	171	7	173	1	T|0.633;G|0.367	0	0	0	0	0	G	40915045	T	G	40915045	2	3	23	1	0	0	0	0	0	0	0	1	2669	1509	53	5		5	CASC5	15	40915045	Silent	SNP	T	TCGA-OR-A5JW-01A-11D-A29I-10	6266466	40915045	61616347	67	3924										
RAD51	5888	broad.mit.edu	37	chr15	41020953	41020953	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0277777777777778	3	1	0.679884453781513	1.65114795918367	0.312379343629344	1	1	0	cctggataatgtagcatatgCtcgagcgttcaacacagacc	9	11	1	1	novel		TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	RAD51-563	NM_133487	exon7	c.C578A	p.A193D	CATATGCTCGAGC	.	88	5	50	0	.	3	3	0	0	0	A	41020953	C	A	41020953	3	1	23	1	0	0	0	0	1	0	0	0	13020	797	28	3	722	3	RAD51	15	41020953	Missense_Mutation	SNP	C	TCGA-OR-A5JW-01A-11D-A29I-10	105908	41020953	61510439	68	3925										
LACTB	114294	hgsc.bcm.edu	37	chr15	63414083	63414083	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0277777777777778	3	1	0.679884453781513	1.65114795918367	0.312379343629344	1	1	0	gagacgccatgtaccggctcAtgtcagcagtgactgcccgg	13	13	2	2	rs34317102	byfrequency	TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	LACTB-90	NM_171846	exon1	c.A13C	p.M5L	CGGCTCATGTCAG	.	11	11	0	0	A|0.226;C|0.774	1	0	1	0	0	C	63414083	A	C	63414083	3	2	23	1	0	0	0	0	1	0	0	0	8619	217	8	5	15	5	LACTB	15	63414083	Missense_Mutation	SNP	A	TCGA-OR-A5JW-01A-11D-A29I-10	22393130	63414083	39117309	69	3926										
KBTBD13	390594	hgsc.bcm.edu	37	chr15	65369531	65369531	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0277777777777778	3	1	0.679884453781513	1.65114795918367	0.312379343629344	1	1	0	gacgtgttccacagtgccgcGctcttcatctgcgacggcga	12	14	3	0	rs2946642	byfrequency	TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	.	NM_001101362	exon1	c.G378T	p.A126A	TGCCGCGCTCTTC	.	8	7	0	0	G|0.479;T|0.521	0	0	0	0	0	T	65369531	G	T	65369531	2	4	23	1	0	0	0	0	0	0	0	1	8013	1074	38	2		2	KBTBD13	15	65369531	Silent	SNP	G	TCGA-OR-A5JW-01A-11D-A29I-10	1955448	65369531	37161861	70	3927										
CHRNA3	1136	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr15	78894294	78894294	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0277777777777778	3	1	0.679884453781513	1.65114795918367	0.312379343629344	1	1	0	atgtacagcgagtatgtgatGtcggggtagatctcctcgca	13	8	1	2	novel		TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	CHRNA3-515	NM_000743	exon5	c.C690A	p.D230E	TGTGATGTCGGGG	.	267	93	194	0	.	3	3	0	0	0	T	78894294	G	T	78894294	3	4	23	1	0	0	0	0	1	0	0	0	3390	1368	48	3	920	3	CHRNA3	15	78894294	Missense_Mutation	SNP	G	TCGA-OR-A5JW-01A-11D-A29I-10	13524763	78894294	23637098	71	3928										
NARFL	64428	hgsc.bcm.edu	37	chr16	790926	790926	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0277777777777778	3	1	0.679884453781513	1.65114795918367	0.312379343629344	1	1	0	ccaggccggcccacctgagaCggcccgatgaagtcatccag	12	16	1	2	novel		TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	NARFL-90	NM_022493	exon1	c.G60A	p.P20P	CTGAGACGGCCCG	.	38	23	0	0	.	0	0	0	0	0	T	790926	C	T	790926	2	4	23	1	0	0	0	0	0	0	0	1	10196	523	19	1		1	NARFL	16	790926	Silent	SNP	C	TCGA-OR-A5JW-01A-11D-A29I-10		790926	89563827	72	3929										
C16orf89	146556	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr16	5115841	5115841	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0277777777777778	3	1	0.679884453781513	1.65114795918367	0.312379343629344	1	1	0	tcagcagtgtccagcccaggCagtgaggaggaccacagcgg	15	12	1	1	novel		TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	C16orf89-92	NM_001098514	exon1	c.G69A	p.L23L	CCCAGGCAGTGAG	.	250	100	135	0	.	0	0	0	0	0	T	5115841	C	T	5115841	2	4	23	1	0	0	0	0	0	0	0	1	1846	697	25	3		3	C16orf89	16	5115841	Silent	SNP	C	TCGA-OR-A5JW-01A-11D-A29I-10	4324915	5115841	85238912	73	3930										
ABCC6	368	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr16	16256886	16256886	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0277777777777778	3	1	0.679884453781513	1.65114795918367	0.312379343629344	1	1	0	gcgggaaactgatcctctggCtttcatctacgcgagcattg	11	11	3	1	novel		TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	ABCC6-93	NM_001171	exon24	c.G3470T	p.S1157I	CTCTGGCTTTCAT	.	177	76	105	1	.	1	1	0	0	0	A	16256886	C	A	16256886	3	1	23	1	0	0	0	0	1	0	0	0	57	797	28	3	1073	3	ABCC6	16	16256886	Missense_Mutation	SNP	C	TCGA-OR-A5JW-01A-11D-A29I-10	11141045	16256886	74097867	74	3931										
DNAH3	55567	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	21061229	21061229	+	Splice_Site	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0277777777777778	3	1	0.679884453781513	1.65114795918367	0.312379343629344	1	1	0	gggatagatggcatttgcttAcctgcttagccaaggctttg	12	8	0	1	novel		TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	DNAH3-167	NM_017539	exon31	c.4347+2T>A	.	TTGCTTACCTGCT	.	95	39	36	0	.	0	0	0	0	0	T	21061229	A	T	21061229	5	4	23	1	0	0	0	0	0	0	1	0	4614	405	14	5	8132	5	DNAH3	16	21061229	Splice_Site	SNP	A	TCGA-OR-A5JW-01A-11D-A29I-10	4804343	21061229	69293524	75	3932										
FBRS	64319	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr16	30677859	30677859	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0277777777777778	3	1	0.679884453781513	1.65114795918367	0.312379343629344	1	1	0	gaccatttccggccacctttGagggtgagttgtgtgaggac	14	9	0	3	novel		TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	FBRS-23	NM_001105079	exon6	c.G240C	p.L80F	ACCTTTGAGGGTG	.	173	57	89	0	.	4	2	2	0	0	C	30677859	G	C	30677859	3	2	23	1	0	0	0	0	1	0	0	0	5726	1281	45	3	258	3	FBRS	16	30677859	Missense_Mutation	SNP	G	TCGA-OR-A5JW-01A-11D-A29I-10	9616630	30677859	59676894	76	3933										
CCDC102A	92922	hgsc.bcm.edu	37	chr16	57562804	57562804	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0277777777777778	3	1	0.679884453781513	1.65114795918367	0.312379343629344	1	1	0	ggcagtgcagtccgaccaccGgcgcatggtcttctccatct	11	15	3	0	rs12935069		TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	CCDC102A-91	NM_033212	exon2	c.C286T	p.R96W	ACCACCGGCGCAT	.	6	6	0	0	G|0.001;A|0.999	0	0	0	0	0	A	57562804	G	A	57562804	3	1	23	1	0	0	0	0	1	0	0	0	2742	1115	39	1	1398	1	CCDC102A	16	57562804	Missense_Mutation	SNP	G	TCGA-OR-A5JW-01A-11D-A29I-10	26884945	57562804	32791949	77	3934										
SLC38A8	146167	bcgsc.ca	37	chr16	84070500	84070500	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0277777777777778	3	1	0.679884453781513	1.65114795918367	0.312379343629344	1	1	0	ccgctgatcaggaagaccaaCgagacctgcggagaaggagc	14	11	1	4	rs1317524	byfrequency	TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	SLC38A8-68	NM_001080442	exon2	c.G195C	p.S65S	GACCAACGAGACC	.	165	7	68	0	C|0.617;G|0.383	0	0	0	0	0	G	84070500	C	G	84070500	2	3	23	1	0	0	0	0	0	0	0	1	14645	523	19	2		2	SLC38A8	16	84070500	Silent	SNP	C	TCGA-OR-A5JW-01A-11D-A29I-10	26507696	84070500	6284253	78	3935										
SGSM2	9905	bcgsc.ca	37	chr17	2275734	2275734	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0277777777777778	3	1	0.679884453781513	1.65114795918367	0.312379343629344	1	1	0	gaccggcccccgggggcctcCgcgggcctcaccaaggacgt	15	18	1	0	rs3213712	byfrequency	TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	SGSM2-68	NM_014853	exon15	c.C1740G	p.S580S	GGCCTCCGCGGGC	.	139	8	144	0	C|0.810;G|0.190	3	3	0	0	0	G	2275734	C	G	2275734	2	3	23	1	0	0	0	0	0	0	0	1	14258	639	23	2		2	SGSM2	17	2275734	Silent	SNP	C	TCGA-OR-A5JW-01A-11D-A29I-10		2275734	78919476	79	3936										
SARM1	23098	hgsc.bcm.edu	37	chr17	26699121	26699121	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0277777777777778	3	1	0.679884453781513	1.65114795918367	0.312379343629344	1	1	0	cgccatgtcgggcccacggcGgggcgccgagcggctggcgg	20	15	0	0	rs7212814		TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	.	NM_015077	exon1	c.G68C	p.R23P	CACGGCGGGGCGC	.	6	6	0	0	G|0.001;C|0.999	2	0	2	0	0	C	26699121	G	C	26699121	3	2	23	1	0	0	0	0	1	0	0	0	13877	1116	39	2	70	2	SARM1	17	26699121	Missense_Mutation	SNP	G	TCGA-OR-A5JW-01A-11D-A29I-10	24423387	26699121	54496089	80	3937										
NF1	4763	hgsc.bcm.edu;bcgsc.ca	37	chr17	29654828	29654829	+	Frame_Shift_Ins	INS	-	-	A													0.0277777777777778	3	1	0.679884453781513	1.65114795918367	0.312379343629344	1	1	0	tgctcaatatcgcattacttINSaatttaggcagttctgaccc					novel		TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	NF1-3353	NM_001042492	exon38	c.5580_5581insA	p.L1860fs	ATTACTTAATTTA	.	55	40	97	1	.	0	0	0	0	0	A	29654829	-	A	29654828	7	5	23	1	0	1	1	0	0	0	0	0	10385	1741	61	0	5791	0	NF1	17	29654828	Frame_Shift_Ins	INS	-	TCGA-OR-A5JW-01A-11D-A29I-10	2955707	29654828	51540382	81	3938										
PCGF2	7703	broad.mit.edu	37	chr17	36891628	36891628	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0277777777777778	3	1	0.679884453781513	1.65114795918367	0.312379343629344	1	1	0	agtgggggaggtagggtgggTggctggaggcccatgggaac	23	5	0	0	novel		TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	PCGF2-658	NM_007144	exon11	c.A883C	p.T295P	GGTGGGTGGCTGG	.	82	10	86	9	.	40	39	1	0	0	G	36891628	T	G	36891628	3	3	23	1	0	0	0	0	1	0	0	0	11604	1696	59	5	155	5	PCGF2	17	36891628	Missense_Mutation	SNP	T	TCGA-OR-A5JW-01A-11D-A29I-10	7236800	36891628	44303582	82	3939										
RNF157	114804	hgsc.bcm.edu	37	chr17	74154491	74154491	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0277777777777778	3	1	0.679884453781513	1.65114795918367	0.312379343629344	1	1	0	tacctctccgagatgctgaaCcgacggtctctgagagagct	11	12	2	4	novel		TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	RNF157-228	NM_052916	exon13	c.G1396A	p.V466I	GCTGAACCGACGG	.	62	5	65	0	.	11	11	0	0	0	T	74154491	C	T	74154491	3	4	23	1	0	0	0	0	1	0	0	0	13489	507	18	3	671	3	RNF157	17	74154491	Missense_Mutation	SNP	C	TCGA-OR-A5JW-01A-11D-A29I-10	37262863	74154491	7040719	83	3940										
LPPR3	0	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	814975	814975	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0277777777777778	3	1	0.679884453781513	1.65114795918367	0.312379343629344	1	1	0	caggacgtgcccaggagagtGtagttgggcttgcagacggt	17	8	0	2	novel		TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	.	NM_001270366	exon5	c.C510T	p.Y170Y	GAGAGTGTAGTTG	.	248	100	123	1	.	0	0	0	0	0	A	814975	G	A	814975	2	1	23	1	0	0	0	0	0	0	0	1	8953	1372	48	3		3	LPPR3	19	814975	Silent	SNP	G	TCGA-OR-A5JW-01A-11D-A29I-10		814975	58314008	84	3941										
PLIN5	440503	hgsc.bcm.edu	37	chr19	4524016	4524016	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0277777777777778	3	1	0.679884453781513	1.65114795918367	0.312379343629344	1	1	0	ggcgccggcgggcaggccccGcacgctggactccagagcct	16	17	0	1	rs1062223	byfrequency	TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	PLIN5-22	NM_001013706	exon8	c.C916T	p.R306W	GGCCCCGCACGCT	.	10	7	0	0	G|0.892;A|0.108	2	1	1	0	0	A	4524016	G	A	4524016	3	1	23	1	0	0	0	0	1	0	0	0	12122	1086	38	1	479	1	PLIN5	19	4524016	Missense_Mutation	SNP	G	TCGA-OR-A5JW-01A-11D-A29I-10	3709041	4524016	54604967	85	3942										
C19orf10	56005	hgsc.bcm.edu	37	chr19	4670313	4670313	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0277777777777778	3	1	0.679884453781513	1.65114795918367	0.312379343629344	1	1	0	cgcggcccacaagctcgcgcCgacgccgttccaccctccgc	10	22	0	0	rs2270090	byfrequency	TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	C19orf10-90	NM_019107	exon1	c.G34C	p.G12R	TCGCGCCGACGCC	.	9	8	0	0	C|0.752;G|0.248	9	0	9	0	0	G	4670313	C	G	4670313	3	3	23	1	0	0	0	0	1	0	0	0	1914	652	23	2	511	2	C19orf10	19	4670313	Missense_Mutation	SNP	C	TCGA-OR-A5JW-01A-11D-A29I-10	146297	4670313	54458670	86	3943										
OR7E24	26648	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	9362064	9362064	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0277777777777778	3	1	0.679884453781513	1.65114795918367	0.312379343629344	1	1	0	gtcatctcctatgaaggctgCctgactcagatgtctttttt	8	10	4	3	novel		TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	OR7E24-47	NM_001079935	exon1	c.C345A	p.C115X	AGGCTGCCTGACT	.	76	34	32	0	.	0	0	0	0	0	A	9362064	C	A	9362064	4	1	23	1	0	0	0	0	0	1	0	0	11250	747	26	3	347	3	OR7E24	19	9362064	Nonsense_Mutation	SNP	C	TCGA-OR-A5JW-01A-11D-A29I-10	4691751	9362064	49766919	87	3944										
DNM2	1785	broad.mit.edu	37	chr19	10939897	10939897	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0277777777777778	3	1	0.679884453781513	1.65114795918367	0.312379343629344	1	1	0	agcactgtgtccacgcctgtAcccccgcctgtcgatgacac	9	17	0	1	novel		TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	DNM2-471	NM_001005361	exon19	c.A2244C	p.V748V	GCCTGTACCCCCG	.	177	36	81	13	.	192	185	5	2	0	C	10939897	A	C	10939897	2	2	23	1	0	0	0	0	0	0	0	1	4683	378	14	5		5	DNM2	19	10939897	Silent	SNP	A	TCGA-OR-A5JW-01A-11D-A29I-10	1577833	10939897	48189086	88	3945										
SLC5A5	6528	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	chr19	17983255	17983255	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0277777777777778	3	1	0.679884453781513	1.65114795918367	0.312379343629344	1	1	0	tggctcggggcgggcagcgcAgcgctgaggacttcttcacc	16	13	2	1	novel		TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	SLC5A5-93	NM_000453	exon1	c.A127G	p.S43G	CAGCGCAGCGCTG	.	31	12	11	0	.	0	0	0	0	0	G	17983255	A	G	17983255	3	3	23	1	0	0	0	0	1	0	0	0	14703	188	7	4	129	4	SLC5A5	19	17983255	Missense_Mutation	SNP	A	TCGA-OR-A5JW-01A-11D-A29I-10	7043358	17983255	41145728	89	3946										
NUDT19	390916	hgsc.bcm.edu	37	chr19	33183282	33183282	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0277777777777778	3	1	0.679884453781513	1.65114795918367	0.312379343629344	1	1	0	ctttgaggaggcgggcgtgcTgctgctgcggcccaggactt	17	11	0	1	novel		TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	NUDT19-22	NM_001105570	exon1	c.T416G	p.L139R	GCGTGCTGCTGCT	.	16	5	1	0	.	2	2	0	0	0	G	33183282	T	G	33183282	3	3	23	1	0	0	0	0	1	0	0	0	10765	1580	55	5	418	5	NUDT19	19	33183282	Missense_Mutation	SNP	T	TCGA-OR-A5JW-01A-11D-A29I-10	15200027	33183282	25945701	90	3947										
KIAA0355	9710	ucsc.edu	37	chr19	34843761	34843761	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0277777777777778	3	1	0.679884453781513	1.65114795918367	0.312379343629344	1	1	0	tcctatgtgcagaccccaccCcagcccccacccccaccagc	5	24	0	1	rs397414	byfrequency	TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	KIAA0355-91	NM_014686	exon14	c.C3114A	p.P1038P	CCCACCCCAGCCC	.	37	5	12	0	C|0.379;A|0.621	0	0	0	0	0	A	34843761	C	A	34843761	2	1	23	1	0	0	0	0	0	0	0	1	8191	610	22	3		3	KIAA0355	19	34843761	Silent	SNP	C	TCGA-OR-A5JW-01A-11D-A29I-10	1660479	34843761	24285222	91	3948										
FAM98C	147965	hgsc.bcm.edu	37	chr19	38894294	38894294	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0277777777777778	3	1	0.679884453781513	1.65114795918367	0.312379343629344	1	1	0	ctctgcggcggggatggcgcGgctgcgcttcgggaacccgg	19	13	1	0	novel		TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	FAM98C-91	NM_174905	exon3	c.G309T	p.A103A	TGGCGCGGCTGCG	.	6	5	0	0	.	9	3	6	0	0	T	38894294	G	T	38894294	2	4	23	1	0	0	0	0	0	0	0	1	5677	1103	39	2		2	FAM98C	19	38894294	Silent	SNP	G	TCGA-OR-A5JW-01A-11D-A29I-10	4050533	38894294	20234689	92	3949										
RINL	126432	hgsc.bcm.edu	37	chr19	39360720	39360720	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0277777777777778	3	1	0.679884453781513	1.65114795918367	0.312379343629344	1	1	0	ggctccgcaaggcgggggcgGggctctgcccttccggtccc	17	16	1	0	rs8110393		TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	RINL-91	NM_001195833	exon9	c.C1205T	p.P402L	GGGGCGGGGCTCT	.	7	7	0	0	G|0.349;A|0.651	0	0	0	0	0	A	39360720	G	A	39360720	3	1	23	1	0	0	0	0	1	0	0	0	13410	1232	43	3	511	3	RINL	19	39360720	Missense_Mutation	SNP	G	TCGA-OR-A5JW-01A-11D-A29I-10	466426	39360720	19768263	93	3950										
CYP2B6	1555	bcgsc.ca	37	chr19	41512841	41512841	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0277777777777778	3	1	0.679884453781513	1.65114795918367	0.312379343629344	1	1	0	gaccccaccttcctcttccaGtccattaccgccaacatcat	3	19	2	0	rs56308434		TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	CYP2B6-92	NM_000767	exon4	c.G516T	p.Q172H	CTTCCAGTCCATT	.	174	7	89	0	.	0	0	0	0	0	T	41512841	G	T	41512841	3	4	23	1	0	0	0	0	1	0	0	0	4170	1020	36	3	530	3	CYP2B6	19	41512841	Missense_Mutation	SNP	G	TCGA-OR-A5JW-01A-11D-A29I-10	2152121	41512841	17616142	94	3951										
MEGF8	1954	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	42855429	42855429	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0277777777777778	3	1	0.679884453781513	1.65114795918367	0.312379343629344	1	1	0	ggacgcggcatgcagccggcGgggccggggtcggggtgccc	22	13	0	0	novel		TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	MEGF8-23	NM_001271938	exon16	c.G2798A	p.R933Q	GCCGGCGGGGCCG	.	112	52	30	0	.	6	3	3	0	0	A	42855429	G	A	42855429	3	1	23	1	0	0	0	0	1	0	0	0	9491	1116	39	1	2655	1	MEGF8	19	42855429	Missense_Mutation	SNP	G	TCGA-OR-A5JW-01A-11D-A29I-10	1342588	42855429	16273554	95	3952										
APOE	348	hgsc.bcm.edu	37	chr19	45411941	45411941	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0277777777777778	3	1	0.679884453781513	1.65114795918367	0.312379343629344	1	1	0	gcgcggacatggaggacgtgTgcggccgcctggtgcagtac	18	11	0	0	rs429358	byfrequency	TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	APOE-90	NM_000041	exon4	c.T388C	p.C130R	GACGTGTGCGGCC	.	29	13	0	0	T|0.861;C|0.139	1092	577	511	2	2	C	45411941	T	C	45411941	3	2	23	1	0	0	0	0	1	0	0	0	802	1696	59	4	398	4	APOE	19	45411941	Missense_Mutation	SNP	T	TCGA-OR-A5JW-01A-11D-A29I-10	2556512	45411941	13717042	96	3953										
ERCC2	2068	hgsc.bcm.edu	37	chr19	45867259	45867259	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0277777777777778	3	1	0.679884453781513	1.65114795918367	0.312379343629344	1	1	0	ctcaccctgcagcacttcgtCgggcagcacggggttggcca	13	15	1	0	rs1799793	byfrequency	TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	ERCC2-848	NM_000400	exon10	c.G934A	p.D312N	CTTCGTCGGGCAG	.	9	6	0	0	C|0.804;T|0.196	17	12	5	0	0	T	45867259	C	T	45867259	3	4	23	1	0	0	0	0	1	0	0	0	5226	884	31	1	1461	1	ERCC2	19	45867259	Missense_Mutation	SNP	C	TCGA-OR-A5JW-01A-11D-A29I-10	455318	45867259	13261724	97	3954										
GLTSCR2	29997	hgsc.bcm.edu	37	chr19	48258699	48258699	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0277777777777778	3	1	0.679884453781513	1.65114795918367	0.312379343629344	1	1	0	ccaggtggccctgaggctggCggagctggcgcggcggcaga	20	12	0	2	rs11538665		TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	GLTSCR2-514	NM_015710	exon9	c.C1148T	p.A383V	GGCTGGCGGAGCT	.	4	4	0	0	G|0.994;A|0.006	92	28	64	0	0	T	48258699	C	T	48258699	3	4	23	1	0	0	0	0	1	0	0	0	6495	768	27	1	1182	1	GLTSCR2	19	48258699	Missense_Mutation	SNP	C	TCGA-OR-A5JW-01A-11D-A29I-10	2391440	48258699	10870284	98	3955										
LILRB3	11025	ucsc.edu	37	chr19	54725992	54725992	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0277777777777778	3	1	0.679884453781513	1.65114795918367	0.312379343629344	1	1	0	agggctgagagggtgggtttGctgtaggctcctaggagaga	19	5	0	2	rs148339740	byfrequency	TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	LILRB3-93	NM_006864	exon4	c.C366T	p.S122S	GGGTTTGCTGTAG	.	121	19	100	9	G|0.881;A|0.119	0	0	0	0	0	A	54725992	G	A	54725992	2	1	23	1	0	0	0	0	0	0	0	1	8815	1310	46	3		3	LILRB3	19	54725992	Silent	SNP	G	TCGA-OR-A5JW-01A-11D-A29I-10	6467293	54725992	4402991	99	3956										
ZNF628	89887	hgsc.bcm.edu	37	chr19	55993260	55993260	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0277777777777778	3	1	0.679884453781513	1.65114795918367	0.312379343629344	1	1	0	gcgccgcccccgccccgggtAccgcctccgcggccccgccc	12	26	0	0	rs34864744		TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	ZNF628-22	NM_033113	exon3	c.A700G	p.T234A	CCGGGTACCGCCT	.	6	6	0	0	A|0.270;G|0.730	0	0	0	0	0	G	55993260	A	G	55993260	3	3	23	1	0	0	0	0	1	0	0	0	18089	391	14	4	690	4	ZNF628	19	55993260	Missense_Mutation	SNP	A	TCGA-OR-A5JW-01A-11D-A29I-10	1267268	55993260	3135723	100	3957										
TCF15	6939	hgsc.bcm.edu	37	chr20	590456	590456	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0277777777777778	3	1	0.679884453781513	1.65114795918367	0.312379343629344	1	1	0	cccttggcactgcccgcggcAcggaagcacggctgcccgtc	13	18	0	0	rs282164	byfrequency	TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	TCF15-90	NM_004609	exon1	c.T426C	p.R142R	CGCGGCACGGAAG	.	8	8	0	0	A|0.165;G|0.835	0	0	0	0	0	G	590456	A	G	590456	2	3	23	1	0	0	0	0	0	0	0	1	15725	146	6	4		4	TCF15	20	590456	Silent	SNP	A	TCGA-OR-A5JW-01A-11D-A29I-10		590456	62435064	101	3958										
CHGB	1114	bcgsc.ca	37	chr20	5903388	5903388	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0277777777777778	3	1	0.679884453781513	1.65114795918367	0.312379343629344	1	1	0	agacacaaaacgcttttctcAatgaaagaaagcaggcttca	7	9	2	3	rs881118	byfrequency	TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	CHGB-96	NM_001819	exon4	c.A598C	p.N200H	TTTCTCAATGAAA	.	140	6	122	0	A|0.887;C|0.113	102	102	0	0	0	C	5903388	A	C	5903388	3	2	23	1	0	0	0	0	1	0	0	0	3345	130	5	5	612	5	CHGB	20	5903388	Missense_Mutation	SNP	A	TCGA-OR-A5JW-01A-11D-A29I-10	5312932	5903388	57122132	102	3959										
SLC32A1	140679	bcgsc.ca	37	chr20	37356245	37356245	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0277777777777778	3	1	0.679884453781513	1.65114795918367	0.312379343629344	1	1	0	atgaagacggcgaggtggtgCgcgtgcgggactcgtacgtg	19	8	0	2	novel		TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	SLC32A1-90	NM_080552	exon2	c.C541T	p.R181C	GTGGTGCGCGTGC	.	138	65	37	1	.	0	0	0	0	0	T	37356245	C	T	37356245	3	4	23	1	0	0	0	0	1	0	0	0	14600	768	27	1	547	1	SLC32A1	20	37356245	Missense_Mutation	SNP	C	TCGA-OR-A5JW-01A-11D-A29I-10	31452857	37356245	25669275	103	3960										
COL9A3	1299	bcgsc.ca	37	chr20	61463522	61463522	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0277777777777778	3	1	0.679884453781513	1.65114795918367	0.312379343629344	1	1	0	ccagggtccgggaggtgccgCaggccctaagggagaccagg	18	12	0	1	rs751557	byfrequency	TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	COL9A3-514	NM_001853	exon25	c.C1304A	p.A435E	GTGCCGCAGGCCC	.	360	11	184	1	T|0.059;G|0.214	0	0	0	0	0	A	61463522	C	A	61463522	3	1	23	1	0	0	0	0	1	0	0	0	3715	710	25	3	1402	3	COL9A3	20	61463522	Missense_Mutation	SNP	C	TCGA-OR-A5JW-01A-11D-A29I-10	24107277	61463522	1561998	104	3961										
LIME1	54923	hgsc.bcm.edu	37	chr20	62369658	62369658	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0277777777777778	3	1	0.679884453781513	1.65114795918367	0.312379343629344	1	1	0	agctgccccgggctctgccgGcagctgcagccaccgcaggg	15	17	1	0	novel		TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	LIME1-44	NM_017806	exon5	c.G391T	p.A131S	CTGCCGGCAGCTG	.	43	23	3	0	.	11	8	3	0	0	T	62369658	G	T	62369658	3	4	23	1	0	0	0	0	1	0	0	0	8823	1203	42	3	405	3	LIME1	20	62369658	Missense_Mutation	SNP	G	TCGA-OR-A5JW-01A-11D-A29I-10	906136	62369658	655862	105	3962										
NEFH	4744	ucsc.edu	37	chr22	29885567	29885567	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0277777777777778	3	1	0.679884453781513	1.65114795918367	0.312379343629344	1	1	0	tctccaacgaaggaggaagcAaagtcccctgagaaggccaa	11	11	1	1	rs75808076		TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	NEFH-90	NM_021076	exon4	c.A1938C	p.A646A	GGAAGCAAAGTCC	.	150	32	127	0	.	0	0	0	0	0	C	29885567	A	C	29885567	2	2	23	1	0	0	0	0	0	0	0	1	10343	117	5	5		5	NEFH	22	29885567	Silent	SNP	A	TCGA-OR-A5JW-01A-11D-A29I-10		29885567	21418999	106	3963										
EP300	2033	bcgsc.ca	37	chr22	41551039	41551039	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0277777777777778	3	1	0.679884453781513	1.65114795918367	0.312379343629344	1	1	0	cgacaggcactgatgccaacTttggaggcactttaccgtca	10	12	1	1	rs20552	bycluster;byfrequency;bysubmitter;byhapmap;by1000genomes	TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	EP300-2011	NM_001429	exon17	c.T3183A	p.T1061T	GCCAACTTTGGAG	.	50	4	79	0	T|0.375;A|0.625	11	11	0	0	0	A	41551039	T	A	41551039	2	1	23	1	0	0	0	0	0	0	0	1	5161	1596	56	5		5	EP300	22	41551039	Silent	SNP	T	TCGA-OR-A5JW-01A-11D-A29I-10	11665472	41551039	9753527	107	3964										
PCDH11X	27328	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chrX	91132451	91132451	+	Silent	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0277777777777778	3	1	0.679884453781513	1.65114795918367	0.312379343629344	1	1	0	tgcttcacagatcatgaaatCcctttcagattaaggccagt	7	10	3	3	rs2563383	alternate_allele	TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	PCDH11X-193	NM_001168363	exon2	c.C1212A	p.I404I	TGAAATCCCTTTC	.	272	242	243	2	T|1.000;|0.000	0	0	0	0	0	A	91132451	C	A	91132451	2	1	23	1	0	0	0	0	0	0	0	1	11537	845	30	3		3	PCDH11X	23	91132451	Silent	SNP	C	TCGA-OR-A5JW-01A-11D-A29I-10		91132451	64138109	108	3965										
MTHFR	4524	bcgsc.ca	37	chr1	11863057	11863057	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0925925925925926	10	0.584916894053224	1.4920922997148	3.9336978810663	0.920652695568709	1	1	0	cggagtctctcatgccgctcGgggtccaggcccggggtgga	17	13	2	0	rs2066470	byfrequency	TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	.	MTHFR-90	NM_005957	exon2	c.C117T	p.P39P	CCGCTCGGGGTCC	.	55	4	81	0	G|0.910;A|0.090	0	0	0	0	0	A	11863057	G	A	11863057	2	1	24	1	0	0	0	0	0	0	0	1	9959	1103	39	1		1	MTHFR	1	11863057	Silent	SNP	G	TCGA-OR-A5JX-01A-11D-A29I-10		11863057	237387564	1	3966										
CELA2B	51032	bcgsc.ca	37	chr1	15808767	15808767	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0925925925925926	10	0.584916894053224	1.4920922997148	3.9336978810663	0.920652695568709	1	1	0	ccctttctcccagctcctccGggatctaccgcgtgatgctg	9	17	2	1	rs3820071	byfrequency	TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	.	CELA2B-91	NM_015849	exon4	c.G235A	p.G79R	TCCTCCGGGATCT	.	78	4	98	0	G|0.706;A|0.294	0	0	0	0	0	A	15808767	G	A	15808767	3	1	24	1	0	0	0	0	1	0	0	0	3218	1116	39	1	249	1	CELA2B	1	15808767	Missense_Mutation	SNP	G	TCGA-OR-A5JX-01A-11D-A29I-10	3945710	15808767	233441854	2	3967										
HSPG2	3339	bcgsc.ca	37	chr1	22165987	22165987	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0925925925925926	10	0.584916894053224	1.4920922997148	3.9336978810663	0.920652695568709	1	1	0	tgtgtcaccttccagccggtGctgccagggcagtggggaac	15	12	1	0	rs2291827	byfrequency	TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	.	HSPG2-141	NM_005529	exon73	c.C9766T	p.H3256Y	GCCGGTGCTGCCA	.	90	5	159	0	G|0.871;A|0.129	4	4	0	0	0	A	22165987	G	A	22165987	3	1	24	1	0	0	0	0	1	0	0	0	7451	1319	46	3	3509	3	HSPG2	1	22165987	Missense_Mutation	SNP	G	TCGA-OR-A5JX-01A-11D-A29I-10	6357220	22165987	227084634	3	3968										
AP4B1	10717	bcgsc.ca	37	chr1	114438951	114438951	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0925925925925926	10	0.584916894053224	1.4920922997148	3.9336978810663	0.920652695568709	1	1	0	gggagaggaaaaggcgcagcAaagcagtgagcagctccatc	15	9	0	2	rs1217401	byfrequency	TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	.	AP4B1-93	NM_006594	exon9	c.T1439C	p.L480S	CGCAGCAAAGCAG	.	148	7	215	3	A|0.589;G|0.411	4	4	0	0	0	G	114438951	A	G	114438951	3	3	24	1	0	0	0	0	1	0	0	0	751	131	5	4	792	4	AP4B1	1	114438951	Missense_Mutation	SNP	A	TCGA-OR-A5JX-01A-11D-A29I-10	92272964	114438951	134811670	4	3969										
ANKRD35	148741	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	145560086	145560086	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0925925925925926	10	0.584916894053224	1.4920922997148	3.9336978810663	0.920652695568709	1	1	0	aacccacagatcggctttgaTcctggcctgtgagaaaggca	11	11	0	3	novel		TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	.	ANKRD35-95	NM_144698	exon8	c.T572C	p.I191T	CTTTGATCCTGGC	.	182	81	273	0	.	0	0	0	0	0	C	145560086	T	C	145560086	3	2	24	1	0	0	0	0	1	0	0	0	664	1435	50	4	602	4	ANKRD35	1	145560086	Missense_Mutation	SNP	T	TCGA-OR-A5JX-01A-11D-A29I-10	31121135	145560086	103690535	5	3970										
ATP1A4	480	bcgsc.ca	37	chr1	160134056	160134056	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0925925925925926	10	0.584916894053224	1.4920922997148	3.9336978810663	0.920652695568709	1	1	0	cacctatcgctgctgagatcGaacacttcatccatctgatc	6	14	2	2	rs17368402	byfrequency	TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	.	ATP1A4-94	NM_144699	exon7	c.G889A	p.E297K	GAGATCGAACACT	.	236	11	299	0	G|0.934;A|0.066	0	0	0	0	0	A	160134056	G	A	160134056	3	1	24	1	0	0	0	0	1	0	0	0	1132	1059	37	1	915	1	ATP1A4	1	160134056	Missense_Mutation	SNP	G	TCGA-OR-A5JX-01A-11D-A29I-10	14573970	160134056	89116565	6	3971										
TOR1AIP1	26092	bcgsc.ca	37	chr1	179877780	179877780	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0925925925925926	10	0.584916894053224	1.4920922997148	3.9336978810663	0.920652695568709	1	1	0	ccccaggaatgggccccacaAactgcaagaataaggaccag	10	13	0	1	rs17279712	byfrequency	TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	.	TOR1AIP1-153	NM_001267578	exon8	c.A882C	p.Q294H	CCCACAAACTGCA	.	88	4	117	0	A|0.955;C|0.045	3	3	0	0	0	C	179877780	A	C	179877780	3	2	24	1	0	0	0	0	1	0	0	0	16410	11	1	5	909	5	TOR1AIP1	1	179877780	Missense_Mutation	SNP	A	TCGA-OR-A5JX-01A-11D-A29I-10	19743724	179877780	69372841	7	3972										
CDC73	79577	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	193119482	193119482	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0925925925925926	10	0.584916894053224	1.4920922997148	3.9336978810663	0.920652695568709	1	1	0	tcccagctgcctataacagaTacgatcaggaaagattcaaa	7	10	2	2	novel		TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	.	CDC73-1009	NM_024529	exon9	c.T877G	p.Y293D	AACAGATACGATC	.	55	25	89	0	.	2	0	2	0	0	G	193119482	T	G	193119482	3	3	24	1	0	0	0	0	1	0	0	0	3091	1406	49	5	911	5	CDC73	1	193119482	Missense_Mutation	SNP	T	TCGA-OR-A5JX-01A-11D-A29I-10	13241702	193119482	56131139	8	3973										
CFHR1	3078	bcgsc.ca	37	chr1	196801042	196801042	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0925925925925926	10	0.584916894053224	1.4920922997148	3.9336978810663	0.920652695568709	1	1	0	gctgaatttgtgtgtaaacgGggatatcgtctttcatcacg	11	7	3	1	rs4230	bycluster;byfrequency;by1000genomes	TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	.	CFHR1-90	NM_002113	exon6	c.G906T	p.R302R	TAAACGGGGATAT	.	64	8	427	4	G|0.520;T|0.480	6	6	0	0	0	T	196801042	G	T	196801042	2	4	24	1	0	0	0	0	0	0	0	1	3290	1219	43	3		3	CFHR1	1	196801042	Silent	SNP	G	TCGA-OR-A5JX-01A-11D-A29I-10	3681560	196801042	52449579	9	3974										
CFHR1	3078	bcgsc.ca	37	chr1	196801078	196801078	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0925925925925926	10	0.584916894053224	1.4920922997148	3.9336978810663	0.920652695568709	1	1	0	tcacgttctcacacattgcgAacaacatgttgggatgggaa	10	9	2	0	rs61743621	byfrequency	TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	.	CFHR1-90	NM_002113	exon6	c.A942T	p.R314R	ATTGCGAACAACA	.	68	5	386	3	A|0.604;T|0.396	26	26	0	0	0	T	196801078	A	T	196801078	2	4	24	1	0	0	0	0	0	0	0	1	3290	233	9	5		5	CFHR1	1	196801078	Silent	SNP	A	TCGA-OR-A5JX-01A-11D-A29I-10	36	196801078	52449543	10	3975										
AVPR1B	553	broad.mit.edu	37	chr1	206224853	206224853	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0925925925925926	10	0.584916894053224	1.4920922997148	3.9336978810663	0.920652695568709	1	1	0	ccgctacctggctgtctgtcAccccctgcgcagcctccagc	9	20	2	0	rs148831426	alternate_allele	TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	.	AVPR1B-569	NM_000707	exon1	c.A413C	p.H138P	TCTGTCACCCCCT	.	96	17	90	13	A|1.000;G|0.000	0	0	0	0	0	C	206224853	A	C	206224853	3	2	24	1	0	0	0	0	1	0	0	0	1233	159	6	5	415	5	AVPR1B	1	206224853	Missense_Mutation	SNP	A	TCGA-OR-A5JX-01A-11D-A29I-10	9423775	206224853	43025768	11	3976										
HLX	3142	hgsc.bcm.edu	37	chr1	221057963	221057963	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0925925925925926	10	0.584916894053224	1.4920922997148	3.9336978810663	0.920652695568709	1	1	0	ttggcggcggcggcgcctcgGagcttctccctgcaacacag	14	15	1	0	novel		TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	.	HLX-70	NM_021958	exon4	c.G1384A	p.E462K	GCCTCGGAGCTTC	.	24	22	4	0	.	15	11	4	0	0	A	221057963	G	A	221057963	3	1	24	1	0	0	0	0	1	0	0	0	7237	1175	41	3	1398	3	HLX	1	221057963	Missense_Mutation	SNP	G	TCGA-OR-A5JX-01A-11D-A29I-10	14833110	221057963	28192658	12	3977										
NRXN1	9378	hgsc.bcm.edu	37	chr2	51255090	51255090	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0925925925925926	10	0.584916894053224	1.4920922997148	3.9336978810663	0.920652695568709	1	1	0	ccaggcgccgtcgttaaccgGcgtgtcggccaggagcgtcg	16	14	0	0	rs199784029		TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	.	NRXN1-92	NM_004801	exon2	c.C322T	p.P108S	TAACCGGCGTGTC	.	9	8	0	0	G|0.999;A|0.001	0	0	0	0	0	A	51255090	G	A	51255090	3	1	24	1	0	0	0	0	1	0	0	0	10694	1203	42	3	4676	3	NRXN1	2	51255090	Missense_Mutation	SNP	G	TCGA-OR-A5JX-01A-11D-A29I-10		51255090	191944283	13	3978										
TEKT4	150483	broad.mit.edu	37	chr2	95539829	95539830	+	Frame_Shift_Ins	INS	-	-	G													0.0925925925925926	10	0.584916894053224	1.4920922997148	3.9336978810663	0.920652695568709	1	1	0	accgaggtgcaggctcatccINSgtactccaccaccttccaag					novel		TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	.	TEKT4-155	NM_144705	exon3	c.689_690insG	p.P230fs	CTCATCCGTACTC	.	126	10	183	0	.	0	0	0	0	0	G	95539830	-	G	95539829	7	5	24	1	0	1	1	0	0	0	0	0	15792	652	23	0	699	0	TEKT4	2	95539829	Frame_Shift_Ins	INS	-	TCGA-OR-A5JX-01A-11D-A29I-10	44284739	95539829	147659544	14	3979	32	2								
TEKT4	150483	hgsc.bcm.edu	37	chr2	95539831	95539831	+	Missense_Mutation	SNP	T	T	C													0.0925925925925926	10	0.584916894053224	1.4920922997148	3.9336978810663	0.920652695568709	1	1	0	ccgaggtgcaggctcatccgTactccaccaccttccaagag					rs199573327		TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	.	TEKT4-155	NM_144705	exon3	c.T691C	p.Y231H	CATCCGTACTCCA	.	120	12	169	0	T|0.998;C|0.002	0	0	0	0	0	C	95539831	T	C	95539831	3	2	24	1	0	0	0	0	1	0	0	0	15792	1638	57	4	701	4	TEKT4	2	95539831	Missense_Mutation	SNP	T	TCGA-OR-A5JX-01A-11D-A29I-10	2	95539831	147659542	15	3980	32	2								
IL1RL1	9173	bcgsc.ca	37	chr2	102968007	102968007	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0925925925925926	10	0.584916894053224	1.4920922997148	3.9336978810663	0.920652695568709	1	1	0	tatgactagatgtagtcactGcagtggaaaccaacatacga	9	8	1	2	rs4988956	byfrequency	TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	.	IL1RL1-517	NM_016232	exon11	c.G1297A	p.A433T	GTCACTGCAGTGG	.	149	8	217	2	G|0.541;A|0.459	0	0	0	0	0	A	102968007	G	A	102968007	3	1	24	1	0	0	0	0	1	0	0	0	7684	1319	46	3	1352	3	IL1RL1	2	102968007	Missense_Mutation	SNP	G	TCGA-OR-A5JX-01A-11D-A29I-10	7428176	102968007	140231366	16	3981										
TUBA3E	112714	broad.mit.edu	37	chr2	130951625	130951625	+	Frame_Shift_Del	DEL	G	G	-													0.0925925925925926	10	0.584916894053224	1.4920922997148	3.9336978810663	0.920652695568709	1	1	0	ggccagggggaagtggatgcGggggtacggcacgaggttgg					novel		TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	.	TUBA3E-69	NM_207312	exon4	c.790delC	p.R264fs	GGATGCGGGGGTA	.	383	8	492	0	.	0	0	0	0	0	-	130951625	G	-	130951625	7	5	24	1	0	1	0	1	0	0	0	0	16786	1116	39	0	570	0	TUBA3E	2	130951625	Frame_Shift_Del	DEL	G	TCGA-OR-A5JX-01A-11D-A29I-10	27983618	130951625	112247748	17	3982										
TTN	7273	bcgsc.ca	37	chr2	179558366	179558366	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0925925925925926	10	0.584916894053224	1.4920922997148	3.9336978810663	0.920652695568709	1	1	0	tggttcaacccttttggaaaTggcaacgtgaattttctctt	8	8	2	1	rs2042995	byfrequency	TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	.	TTN-636	NM_001267550	exon119	c.A31564G	p.I10522V	TGGAAATGGCAAC	.	86	5	118	1	T|0.582;C|0.418	0	0	0	0	0	C	179558366	T	C	179558366	3	2	24	1	0	0	0	0	1	0	0	0	16773	1464	51	4	72941	4	TTN	2	179558366	Missense_Mutation	SNP	T	TCGA-OR-A5JX-01A-11D-A29I-10	48606741	179558366	63641007	18	3983										
SH3BP4	23677	bcgsc.ca	37	chr2	235951819	235951819	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0925925925925926	10	0.584916894053224	1.4920922997148	3.9336978810663	0.920652695568709	1	1	0	gagcgggtggcgtccgtcctAgaaaagctgaaggaggactg	17	8	0	2	rs3795962	byfrequency	TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	.	SH3BP4-94	NM_014521	exon4	c.A2406G	p.L802L	CGTCCTAGAAAAG	.	217	7	379	4	G|0.647;N|0.001	2	2	0	0	0	G	235951819	A	G	235951819	2	3	24	1	0	0	0	0	0	0	0	1	14281	407	15	4		4	SH3BP4	2	235951819	Silent	SNP	A	TCGA-OR-A5JX-01A-11D-A29I-10	56393453	235951819	7247554	19	3984										
KIF1A	547	hgsc.bcm.edu	37	chr2	241696843	241696843	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0925925925925926	10	0.584916894053224	1.4920922997148	3.9336978810663	0.920652695568709	1	1	0	aggtcctcctcctcctcatcCtcctcctcctcctcctcctc	2	24	1	0	novel		TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	.	KIF1A-91	NM_001244008	exon27	c.G2751T	p.E917D	CTCATCCTCCTCC	.	251	15	167	0	.	0	0	0	0	0	A	241696843	C	A	241696843	3	1	24	1	0	0	0	0	1	0	0	0	8304	696	24	3		3	KIF1A	2	241696843	Missense_Mutation	SNP	C	TCGA-OR-A5JX-01A-11D-A29I-10	5745024	241696843	1502530	20	3985										
TGM4	7047	bcgsc.ca	37	chr3	44926931	44926931	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0925925925925926	10	0.584916894053224	1.4920922997148	3.9336978810663	0.920652695568709	1	1	0	aggacaggtgtttcacctgcGgctggtgctgaaccagcccc	13	13	1	1	rs115097986		TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	.	TGM4-91	NM_003241	exon2	c.G134A	p.R45Q	ACCTGCGGCTGGT	.	234	7	277	3	G|0.999;A|0.001	0	0	0	0	0	A	44926931	G	A	44926931	3	1	24	1	0	0	0	0	1	0	0	0	15869	1116	39	1	140	1	TGM4	3	44926931	Missense_Mutation	SNP	G	TCGA-OR-A5JX-01A-11D-A29I-10		44926931	153095499	21	3986										
FYCO1	79443	bcgsc.ca	37	chr3	46008087	46008087	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0925925925925926	10	0.584916894053224	1.4920922997148	3.9336978810663	0.920652695568709	1	1	0	tccttttccacggtcagtgcGcaaacctggatgcccagctc	9	15	1	0	rs13079869	byfrequency	TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	.	FYCO1-91	NM_024513	exon8	c.C2739T	p.C913C	CAGTGCGCAAACC	.	172	6	146	1	G|0.920;A|0.080	0	0	0	0	0	A	46008087	G	A	46008087	2	1	24	1	0	0	0	0	0	0	0	1	6144	1079	38	1		1	FYCO1	3	46008087	Silent	SNP	G	TCGA-OR-A5JX-01A-11D-A29I-10	1081156	46008087	152014343	22	3987										
BOC	91653	bcgsc.ca	37	chr3	112991312	112991312	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0925925925925926	10	0.584916894053224	1.4920922997148	3.9336978810663	0.920652695568709	1	1	0	ccagaggcccaaaccatcatCgtcaccaaaggccagagtct	8	15	3	2	rs3814398	byfrequency	TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	.	BOC-157	NM_033254	exon7	c.C723T	p.I241I	CATCATCGTCACC	.	232	8	235	2	C|0.788;T|0.212	0	0	0	0	0	T	112991312	C	T	112991312	2	4	24	1	0	0	0	0	0	0	0	1	1482	874	31	1		1	BOC	3	112991312	Silent	SNP	C	TCGA-OR-A5JX-01A-11D-A29I-10	66983225	112991312	85031118	23	3988										
SMC4	10051	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	160148837	160148837	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.0925925925925926	10	0.584916894053224	1.4920922997148	3.9336978810663	0.920652695568709	1	1	0	taggaatccttaccagagatCcagaaagaacatcgcaatct	7	10	1	3	novel		TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	.	SMC4-291	NM_005496	exon19	c.C2958G	p.I986M	AGAGATCCAGAAA	.	156	48	114	0	.	19	17	2	0	0	G	160148837	C	G	160148837	3	3	24	1	0	0	0	0	1	0	0	0	14820	845	30	3	3032	3	SMC4	3	160148837	Missense_Mutation	SNP	C	TCGA-OR-A5JX-01A-11D-A29I-10	47157525	160148837	37873593	24	3989										
ZFYVE28	57732	bcgsc.ca	37	chr4	2275835	2275835	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0925925925925926	10	0.584916894053224	1.4920922997148	3.9336978810663	0.920652695568709	1	1	0	atgaggtcgtggctgccgtgGaacctggaccggatcttctc	14	11	2	1	rs2051561	byfrequency	TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	.	ZFYVE28-93	NM_020972	exon9	c.C2160T	p.F720F	GCCGTGGAACCTG	.	210	9	274	2	G|0.576;A|0.424	14	14	0	0	0	A	2275835	G	A	2275835	2	1	24	1	0	0	0	0	0	0	0	1	17707	1165	41	3		3	ZFYVE28	4	2275835	Silent	SNP	G	TCGA-OR-A5JX-01A-11D-A29I-10		2275835	188878441	25	3990										
RGS12	6002	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	3388163	3388163	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0925925925925926	10	0.584916894053224	1.4920922997148	3.9336978810663	0.920652695568709	1	1	0	tctgcaactgtgtctgatggCggtaagtcacaatttctgat	10	8	4	2	rs147432997	byfrequency	TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	.	RGS12-226	NM_002926	exon4	c.C2019T	p.G673G	TGATGGCGGTAAG	.	54	14	36	0	C|0.999;T|0.001	0	0	0	0	0	T	3388163	C	T	3388163	2	4	24	1	0	0	0	0	0	0	0	1	13330	782	27	1		1	RGS12	4	3388163	Silent	SNP	C	TCGA-OR-A5JX-01A-11D-A29I-10	1112328	3388163	187766113	26	3991										
ATP8A1	10396	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	42466787	42466787	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0925925925925926	10	0.584916894053224	1.4920922997148	3.9336978810663	0.920652695568709	1	1	0	gttatagttccaggcaccatGaatcatcagtaaattcttca	6	9	4	1	novel		TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	.	ATP8A1-92	NM_006095	exon27	c.C2539T	p.H847Y	CACCATGAATCAT	.	152	37	127	0	.	1	1	0	0	0	A	42466787	G	A	42466787	3	1	24	1	0	0	0	0	1	0	0	0	1193	1290	45	3	999	3	ATP8A1	4	42466787	Missense_Mutation	SNP	G	TCGA-OR-A5JX-01A-11D-A29I-10	39078624	42466787	148687489	27	3992										
HERC3	8916	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr4	89589214	89589214	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0925925925925926	10	0.584916894053224	1.4920922997148	3.9336978810663	0.920652695568709	1	1	0	ccattcttcggctggatacaAaccccagcaaagtactaggt	8	12	1	0	novel		TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	.	HERC3-660	NM_014606	exon14	c.A1615T	p.N539Y	GATACAAACCCCA	.	51	7	52	0	.	2	2	0	0	0	T	89589214	A	T	89589214	3	4	24	1	0	0	0	0	1	0	0	0	7080	14	1	5	1661	5	HERC3	4	89589214	Missense_Mutation	SNP	A	TCGA-OR-A5JX-01A-11D-A29I-10	47122427	89589214	101565062	28	3993										
TLL1	7092	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr4	166981201	166981201	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0925925925925926	10	0.584916894053224	1.4920922997148	3.9336978810663	0.920652695568709	1	1	0	tgcttgtggtggacttcttaCcaaacttaacggcaccataa	8	10	1	0	novel		TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	.	TLL1-158	NM_012464	exon15	c.C1868A	p.T623N	TTCTTACCAAACT	.	32	6	36	0	.	0	0	0	0	0	A	166981201	C	A	166981201	3	1	24	1	0	0	0	0	1	0	0	0	15982	507	18	3	1926	3	TLL1	4	166981201	Missense_Mutation	SNP	C	TCGA-OR-A5JX-01A-11D-A29I-10	77391987	166981201	24173075	29	3994										
GALNTL6	442117	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	173961210	173961210	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0925925925925926	10	0.584916894053224	1.4920922997148	3.9336978810663	0.920652695568709	1	1	0	ggatttttgaacacattaatAtgactgttttagaaaaattt	6	3	0	3	novel		TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	.	GALNTL6-137	NM_001034845	exon13	c.A1765G	p.M589V	ATTAATATGACTG	.	55	14	50	0	.	0	0	0	0	0	G	173961210	A	G	173961210	3	3	24	1	0	0	0	0	1	0	0	0	6245	449	16	4	1811	4	GALNTL6	4	173961210	Missense_Mutation	SNP	A	TCGA-OR-A5JX-01A-11D-A29I-10	6980009	173961210	17193066	30	3995										
WWC2	80014	bcgsc.ca	37	chr4	184236868	184236868	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0925925925925926	10	0.584916894053224	1.4920922997148	3.9336978810663	0.920652695568709	1	1	0	taagcatcccatccctgccaGctgatgatgtgtgattacat	8	11	0	3	rs4862155	byfrequency	TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	.	WWC2-93	NM_024949	exon23	c.G3565A	p.A1189T	CTGCCAGCTGATG	.	114	5	84	0	G|0.953;A|0.047	1	1	0	0	0	A	184236868	G	A	184236868	3	1	24	1	0	0	0	0	1	0	0	0	17450	971	34	3	3655	3	WWC2	4	184236868	Missense_Mutation	SNP	G	TCGA-OR-A5JX-01A-11D-A29I-10	10275658	184236868	6917408	31	3996										
ANKH	56172	bcgsc.ca	37	chr5	14769103	14769103	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0925925925925926	10	0.584916894053224	1.4920922997148	3.9336978810663	0.920652695568709	1	1	0	cctatcagtgtgtgaaagacGgcagcgatggcccctgccac	12	13	1	2	rs17251667	byfrequency	TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	.	ANKH-91	NM_054027	exon2	c.C294T	p.A98A	AAAGACGGCAGCG	.	170	7	260	1	G|0.877;A|0.123	0	0	0	0	0	A	14769103	G	A	14769103	2	1	24	1	0	0	0	0	0	0	0	1	627	1103	39	1		1	ANKH	5	14769103	Silent	SNP	G	TCGA-OR-A5JX-01A-11D-A29I-10		14769103	166146157	32	3997										
SNX18	112574	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	53839018	53839018	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0925925925925926	10	0.584916894053224	1.4920922997148	3.9336978810663	0.920652695568709	1	1	0	tttaactacaggagctcttaCcaaagtcaaggagagtaggc	10	8	2	1	novel		TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	.	SNX18-226	NM_001102575	exon2	c.C1631A	p.T544N	CTCTTACCAAAGT	.	209	64	129	1	.	0	0	0	0	0	A	53839018	C	A	53839018	3	1	24	1	0	0	0	0	1	0	0	0	14924	507	18	3	1903	3	SNX18	5	53839018	Missense_Mutation	SNP	C	TCGA-OR-A5JX-01A-11D-A29I-10	39069915	53839018	127076242	33	3998										
FAM172A	83989	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	93111872	93111872	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0925925925925926	10	0.584916894053224	1.4920922997148	3.9336978810663	0.920652695568709	1	1	0	atcaaacacatacctgctgaGacccgggggcaatcaggtag	11	11	2	1	novel		TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	.	FAM172A-90	NM_032042	exon10	c.C1101T	p.V367V	TGCTGAGACCCGG	.	428	64	238	0	.	0	0	0	0	0	A	93111872	G	A	93111872	2	1	24	1	0	0	0	0	0	0	0	1	5508	929	33	3		3	FAM172A	5	93111872	Silent	SNP	G	TCGA-OR-A5JX-01A-11D-A29I-10	39272854	93111872	87803388	34	3999										
ANXA6	309	broad.mit.edu;bcgsc.ca	37	chr5	150503872	150503872	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0925925925925926	10	0.584916894053224	1.4920922997148	3.9336978810663	0.920652695568709	1	1	0	cccttcatggctttccgcagCgctttggcatctgcgtcagg	11	14	3	0	rs138779149	byfrequency	TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	.	ANXA6-22	NM_001155	exon15	c.G1113A	p.A371A	CCGCAGCGCTTTG	.	170	6	109	0	C|0.997;T|0.003	124	124	0	0	0	T	150503872	C	T	150503872	2	4	24	1	0	0	0	0	0	0	0	1	722	755	27	1		1	ANXA6	5	150503872	Silent	SNP	C	TCGA-OR-A5JX-01A-11D-A29I-10	57392000	150503872	30411388	35	4000										
FAT2	2196	bcgsc.ca	37	chr5	150908812	150908812	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0925925925925926	10	0.584916894053224	1.4920922997148	3.9336978810663	0.920652695568709	1	1	0	gatcttgggggaattggggcCggtgttcattgacatcagtg	16	6	3	1	rs7718054	byfrequency	TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	.	FAT2-96	NM_001447	exon14	c.G9953A	p.R3318Q	TGGGGCCGGTGTT	.	235	6	145	0	C|0.927;T|0.073	0	0	0	0	0	T	150908812	C	T	150908812	3	4	24	1	0	0	0	0	1	0	0	0	5709	652	23	1	3136	1	FAT2	5	150908812	Missense_Mutation	SNP	C	TCGA-OR-A5JX-01A-11D-A29I-10	404940	150908812	30006448	36	4001										
RREB1	6239	hgsc.bcm.edu	37	chr6	7230680	7230680	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0925925925925926	10	0.584916894053224	1.4920922997148	3.9336978810663	0.920652695568709	1	1	0	cggccgcggcctgggcggggGccacaagggccgcaagccct	18	16	0	0	rs9502564	byfrequency	TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	.	RREB1-144	NM_001003700	exon10	c.G2348T	p.G783V	GCGGGGGCCACAA	.	7	7	1	0	G|0.546;T|0.454	0	0	0	0	0	T	7230680	G	T	7230680	3	4	24	1	0	0	0	0	1	0	0	0	13714	1203	42	3	2374	3	RREB1	6	7230680	Missense_Mutation	SNP	G	TCGA-OR-A5JX-01A-11D-A29I-10		7230680	163884387	37	4002										
BTN3A1	11119	broad.mit.edu;bcgsc.ca	37	chr6	26408132	26408132	+	Nonsense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0925925925925926	10	0.584916894053224	1.4920922997148	3.9336978810663	0.920652695568709	1	1	0	agggtgtatcctgtaccatcAgaagttccctcctcggcctg	10	13	1	1	novel		TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	.	BTN3A1-92	NM_007048	exon4	c.A667T	p.R223X	ACCATCAGAAGTT	.	185	9	238	0	.	3	3	0	0	0	T	26408132	A	T	26408132	4	4	24	1	0	0	0	0	0	1	0	0	1565	180	7	5	677	5	BTN3A1	6	26408132	Nonsense_Mutation	SNP	A	TCGA-OR-A5JX-01A-11D-A29I-10	19177452	26408132	144706935	38	4003										
HLA-A	3105	bcgsc.ca	37	chr6	29910688	29910688	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0925925925925926	10	0.584916894053224	1.4920922997148	3.9336978810663	0.920652695568709	1	1	0	gagccgcgggcgccgtggatAgagcaggaggggccggagta	21	9	0	1	rs41544012	byfrequency	TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	.	HLA-A-92	NM_001242758	exon2	c.A228G	p.I76M	GTGGATAGAGCAG	.	211	25	176	2	A|0.885;G|0.115	350	349	1	0	0	G	29910688	A	G	29910688	3	3	24	1	0	0	0	0	1	0	0	0	7216	410	15	4	234	4	HLA-A	6	29910688	Missense_Mutation	SNP	A	TCGA-OR-A5JX-01A-11D-A29I-10	3502556	29910688	141204379	39	4004										
IP6K3	117283	bcgsc.ca	37	chr6	33703230	33703230	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0925925925925926	10	0.584916894053224	1.4920922997148	3.9336978810663	0.920652695568709	1	1	0	cctgccctcatgtccccggcGtctgcgctgttttgcacaac	9	17	2	0	rs545787	byfrequency	TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	.	IP6K3-240	NM_001142883	exon3	c.C24T	p.D8D	CCCGGCGTCTGCG	.	64	5	76	1	G|0.599;A|0.401	0	0	0	0	0	A	33703230	G	A	33703230	2	1	24	1	0	0	0	0	0	0	0	1	7811	1136	40	1		1	IP6K3	6	33703230	Silent	SNP	G	TCGA-OR-A5JX-01A-11D-A29I-10	3792542	33703230	137411837	40	4005										
TULP1	7287	bcgsc.ca	37	chr6	35477025	35477025	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0925925925925926	10	0.584916894053224	1.4920922997148	3.9336978810663	0.920652695568709	1	1	0	gctttgcccttttgattgctCttctttatcaccgtagctgc	7	12	3	1	rs2064318	byfrequency	TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	.	TULP1-92	NM_003322	exon8	c.G783C	p.K261N	ATTGCTCTTCTTT	.	107	8	114	1	C|0.349;G|0.651	2	2	0	0	0	G	35477025	C	G	35477025	3	3	24	1	0	0	0	0	1	0	0	0	16811	912	32	3	877	3	TULP1	6	35477025	Missense_Mutation	SNP	C	TCGA-OR-A5JX-01A-11D-A29I-10	1773795	35477025	135638042	41	4006										
TMEM30A	55754	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr6	75968594	75968594	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0925925925925926	10	0.584916894053224	1.4920922997148	3.9336978810663	0.920652695568709	1	1	0	acttgcgaaaagtaggtaatGctgcagtacgcatccaaaca	9	9	0	0	novel		TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	.	TMEM30A-90	NM_018247	exon6	c.C794T	p.A265V	GGTAATGCTGCAG	.	129	9	126	0	.	3	3	0	0	0	A	75968594	G	A	75968594	3	1	24	1	0	0	0	0	1	0	0	0	16190	1319	46	3	299	3	TMEM30A	6	75968594	Missense_Mutation	SNP	G	TCGA-OR-A5JX-01A-11D-A29I-10	40491569	75968594	95146473	42	4007										
LAMA2	3908	broad.mit.edu	37	chr6	129691085	129691085	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0925925925925926	10	0.584916894053224	1.4920922997148	3.9336978810663	0.920652695568709	1	1	0	agaggcttattcagctggcaGagggcaatctgaatacactc	11	9	2	3	rs138303386	byfrequency;alternate_allele	TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	.	LAMA2-162	NM_000426	exon34	c.G4909T	p.E1637X	CTGGCAGAGGGCA	.	69	4	50	0	G|1.000;A|0.000	0	0	0	0	0	T	129691085	G	T	129691085	4	4	24	1	0	0	0	0	0	1	0	0	8628	943	33	3	5043	3	LAMA2	6	129691085	Nonsense_Mutation	SNP	G	TCGA-OR-A5JX-01A-11D-A29I-10	53722491	129691085	41423982	43	4008										
IGF2R	3482	ucsc.edu	37	chr6	160454109	160454109	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0925925925925926	10	0.584916894053224	1.4920922997148	3.9336978810663	0.920652695568709	1	1	0	cgatacctctcaagtcaaagCagcaggaagataccacaatc	7	12	2	1	novel		TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	.	IGF2R-118	NM_000876	exon9	c.C1181A	p.A394E	TCAAAGCAGCAGG	.	45	4	48	0	.	0	0	0	0	0	A	160454109	C	A	160454109	3	1	24	1	0	0	0	0	1	0	0	0	7597	710	25	3	1215	3	IGF2R	6	160454109	Missense_Mutation	SNP	C	TCGA-OR-A5JX-01A-11D-A29I-10	30763024	160454109	10660958	44	4009										
PRR18	285800	hgsc.bcm.edu	37	chr6	166720806	166720806	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0925925925925926	10	0.584916894053224	1.4920922997148	3.9336978810663	0.920652695568709	1	1	0	cggccccgcgcggcagccgcGgactccacgccgcgcagcca	14	21	0	0	rs911203	byfrequency	TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	.	PRR18-514	NM_175922	exon1	c.C825G	p.S275S	AGCCGCGGACTCC	.	8	8	0	0	G|0.796;C|0.204	0	0	0	0	0	C	166720806	G	C	166720806	2	2	24	1	0	0	0	0	0	0	0	1	12622	1103	39	2		2	PRR18	6	166720806	Silent	SNP	G	TCGA-OR-A5JX-01A-11D-A29I-10	6266697	166720806	4394261	45	4010										
TCP10L2	401285	broad.mit.edu	37	chr6	167592576	167592576	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0925925925925926	10	0.584916894053224	1.4920922997148	3.9336978810663	0.920652695568709	1	1	0	caggcttcccaggccgccacGctgcaggagcagacggcagc	14	16	0	1	rs60976240	byfrequency	TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	.	.	NM_001145121	exon6	c.G735A	p.T245T	CGCCACGCTGCAG	.	90	4	72	0	G|0.425;A|0.575	0	0	0	0	0	A	167592576	G	A	167592576	2	1	24	1	0	0	0	0	0	0	0	1	15749	1074	38	1		1	TCP10L2	6	167592576	Silent	SNP	G	TCGA-OR-A5JX-01A-11D-A29I-10	871770	167592576	3522491	46	4011										
TBP	6908	mdanderson.org	37	chr6	170871043	170871043	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0925925925925926	10	0.584916894053224	1.4920922997148	3.9336978810663	0.920652695568709	1	1	0	cagcagcagcagcagcaacaGcaacagcagcagcagcagca	11	14	0	0	novel		TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	.	TBP-91	NM_003194	exon3	c.G219A	p.Q73Q	GCAACAGCAACAG	.	56	13	48	0	.	441	436	5	0	0	A	170871043	G	A	170871043	2	1	24	1	0	0	0	0	0	0	0	1	15681	962	34	3		3	TBP	6	170871043	Silent	SNP	G	TCGA-OR-A5JX-01A-11D-A29I-10	3278467	170871043	244024	47	4012										
MRPL32	64983	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr7	42971992	42971992	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0925925925925926	10	0.584916894053224	1.4920922997148	3.9336978810663	0.920652695568709	1	1	0	ttccagcagggaaaatggcgCtggccatgctggtcttggtg	15	9	1	0	novel		TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	.	MRPL32-90	NM_031903	exon1	c.C7T	p.L3L	ATGGCGCTGGCCA	.	110	24	86	0	.	23	17	6	0	0	T	42971992	C	T	42971992	2	4	24	1	0	0	0	0	0	0	0	1	9823	796	28	3		3	MRPL32	7	42971992	Silent	SNP	C	TCGA-OR-A5JX-01A-11D-A29I-10		42971992	116166671	48	4013										
AZGP1	563	broad.mit.edu;bcgsc.ca	37	chr7	99564732	99564732	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0925925925925926	10	0.584916894053224	1.4920922997148	3.9336978810663	0.920652695568709	1	1	0	gcactgccaccaccacccagGactggtaagtgccatttcca	8	16	0	0	novel		TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	.	AZGP1-515	NM_001185	exon4	c.C791T	p.S264F	ACCCAGGACTGGT	.	349	14	238	1	.	0	0	0	0	0	A	99564732	G	A	99564732	3	1	24	1	0	0	0	0	1	0	0	0	1240	1174	41	3	109	3	AZGP1	7	99564732	Missense_Mutation	SNP	G	TCGA-OR-A5JX-01A-11D-A29I-10	56592740	99564732	59573931	49	4014										
CADPS2	93664	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	122056123	122056123	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0925925925925926	10	0.584916894053224	1.4920922997148	3.9336978810663	0.920652695568709	1	1	0	acaggtcatcacctctgcatGatgctcttcattctgctgta	7	12	6	1	novel		TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	.	CADPS2-94	NM_001167940	exon19	c.C2593G	p.H865D	CTGCATGATGCTC	.	59	12	46	0	.	0	0	0	0	0	C	122056123	G	C	122056123	3	2	24	1	0	0	0	0	1	0	0	0	2577	1290	45	3	1389	3	CADPS2	7	122056123	Missense_Mutation	SNP	G	TCGA-OR-A5JX-01A-11D-A29I-10	22491391	122056123	37082540	50	4015										
IQUB	154865	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	123105042	123105042	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0925925925925926	10	0.584916894053224	1.4920922997148	3.9336978810663	0.920652695568709	1	1	0	aatcaattctagaatttcctGagttagtttacattcatgtt	5	6	3	2	novel		TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	.	IQUB-156	NM_178827	exon10	c.C1603T	p.Q535X	TTTCCTGAGTTAG	.	68	12	57	0	.	0	0	0	0	0	A	123105042	G	A	123105042	4	1	24	1	0	0	0	0	0	1	0	0	7841	1299	45	3	788	3	IQUB	7	123105042	Nonsense_Mutation	SNP	G	TCGA-OR-A5JX-01A-11D-A29I-10	1048919	123105042	36033621	51	4016										
OR6B1	135946	bcgsc.ca	37	chr7	143701516	143701516	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0925925925925926	10	0.584916894053224	1.4920922997148	3.9336978810663	0.920652695568709	1	1	0	tgagccatgggctctgcttcCgcctcgctcttggttcctgg	12	14	2	1	rs7787378	byfrequency	TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	.	OR6B1-91	NM_001005281	exon1	c.C427T	p.R143C	TGCTTCCGCCTCG	.	223	7	152	0	C|0.853;N|0.000	0	0	0	0	0	T	143701516	C	T	143701516	3	4	24	1	0	0	0	0	1	0	0	0	11216	652	23	1	429	1	OR6B1	7	143701516	Missense_Mutation	SNP	C	TCGA-OR-A5JX-01A-11D-A29I-10	20596474	143701516	15437147	52	4017										
CTAGE4	100128553	broad.mit.edu	37	chr7	143882673	143882673	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0925925925925926	10	0.584916894053224	1.4920922997148	3.9336978810663	0.920652695568709	1	1	0	atgaagcaactggccctggcCttattcctccacctcttgct	7	15	1	1	rs62484795		TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	.	.	NM_198495	exon1	c.C2077T	p.L693F	CCTGGCCTTATTC	.	95	4	57	1	.	1	0	1	0	0	T	143882673	C	T	143882673	3	4	24	1	0	0	0	0	1	0	0	0	3999	681	24	3	2079	3	CTAGE4	7	143882673	Missense_Mutation	SNP	C	TCGA-OR-A5JX-01A-11D-A29I-10	181157	143882673	15255990	53	4018										
PDIA4	9601	hgsc.bcm.edu	37	chr7	148725417	148725417	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0925925925925926	10	0.584916894053224	1.4920922997148	3.9336978810663	0.920652695568709	1	1	0	cgcgcttgccgctcaccctcGtccgggccctcggcacccgc	11	22	1	0	novel		TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	.	PDIA4-524	NM_004911	exon1	c.C84A	p.D28E	ACCCTCGTCCGGG	.	11	4	0	0	.	0	0	0	0	0	T	148725417	G	T	148725417	3	4	24	1	0	0	0	0	1	0	0	0	11699	1136	40	2	1893	2	PDIA4	7	148725417	Missense_Mutation	SNP	G	TCGA-OR-A5JX-01A-11D-A29I-10	4842744	148725417	10413246	54	4019										
COL14A1	7373	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr8	121290694	121290694	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0925925925925926	10	0.584916894053224	1.4920922997148	3.9336978810663	0.920652695568709	1	1	0	gaaaagcaattaagtatgttCgagataccttgttcactgca	8	7	1	1	novel		TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	.	COL14A1-543	NM_021110	exon28	c.C3358T	p.R1120X	TATGTTCGAGATA	.	241	44	163	2	.	0	0	0	0	0	T	121290694	C	T	121290694	4	4	24	1	0	0	0	0	0	1	0	0	3677	876	31	1	3464	1	COL14A1	8	121290694	Nonsense_Mutation	SNP	C	TCGA-OR-A5JX-01A-11D-A29I-10		121290694	25073328	55	4020										
PLEC	5339	hgsc.bcm.edu	37	chr8	144999417	144999417	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0925925925925926	10	0.584916894053224	1.4920922997148	3.9336978810663	0.920652695568709	1	1	0	agggccacctgtacctgccgCgctcgctccacctcggcctg	11	19	0	0	rs55836855	byfrequency	TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	.	PLEC-141	NM_201380	exon31	c.G5091A	p.A1697A	CTGCCGCGCTCGC	.	9	9	0	0	C|0.731;T|0.269	0	0	0	0	0	T	144999417	C	T	144999417	2	4	24	1	0	0	0	0	0	0	0	1	12081	755	27	1		1	PLEC	8	144999417	Silent	SNP	C	TCGA-OR-A5JX-01A-11D-A29I-10	23708723	144999417	1364605	56	4021										
ERMP1	79956	hgsc.bcm.edu	37	chr9	5832728	5832728	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0925925925925926	10	0.584916894053224	1.4920922997148	3.9336978810663	0.920652695568709	1	1	0	aactccccgcggtgtccagcGgccccgcgtagcacgagctg	13	17	0	0	rs1131727	byfrequency	TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	.	ERMP1-69	NM_024896	exon1	c.C300G	p.A100A	TCCAGCGGCCCCG	.	7	5	0	0	G|0.572;C|0.428	0	0	0	0	0	C	5832728	G	C	5832728	2	2	24	1	0	0	0	0	0	0	0	1	5249	1103	39	2		2	ERMP1	9	5832728	Silent	SNP	G	TCGA-OR-A5JX-01A-11D-A29I-10		5832728	135380703	57	4022										
NTRK2	4915	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr9	87570307	87570307	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0925925925925926	10	0.584916894053224	1.4920922997148	3.9336978810663	0.920652695568709	1	1	0	tcgccgcgggcatggtctacCtggcgtcccagcacttcgtg	13	15	1	0	novel		TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	.	NTRK2-1404	NM_006180	exon19	c.C2047G	p.L683V	GTCTACCTGGCGT	.	130	30	108	1	.	0	0	0	0	0	G	87570307	C	G	87570307	3	3	24	1	0	0	0	0	1	0	0	0	10736	680	24	3	2184	3	NTRK2	9	87570307	Missense_Mutation	SNP	C	TCGA-OR-A5JX-01A-11D-A29I-10	81737579	87570307	53643124	58	4023										
SVEP1	79987	bcgsc.ca	37	chr9	113261483	113261483	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0925925925925926	10	0.584916894053224	1.4920922997148	3.9336978810663	0.920652695568709	1	1	0	gttgtggggggatatgatgaCatctttgggcatctgaaagg	16	4	2	3	rs872665	byfrequency	TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	.	SVEP1-75	NM_153366	exon7	c.G1519A	p.V507I	TGATGACATCTTT	.	160	6	149	0	C|0.731;T|0.269	0	0	0	0	0	T	113261483	C	T	113261483	3	4	24	1	0	0	0	0	1	0	0	0	15457	478	17	3	9364	3	SVEP1	9	113261483	Missense_Mutation	SNP	C	TCGA-OR-A5JX-01A-11D-A29I-10	25691176	113261483	27951948	59	4024										
NFKB2	4791	broad.mit.edu	37	chr10	104160223	104160223	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0925925925925926	10	0.584916894053224	1.4920922997148	3.9336978810663	0.920652695568709	1	1	0	ggagctcctgctgtgccccaGctgttgcatatgcctgactt	11	13	0	1	novel		TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	.	NFKB2-522	NM_001077494	exon16	c.G1773T	p.Q591H	GCCCCAGCTGTTG	.	79	6	75	1	.	59	53	6	0	0	T	104160223	G	T	104160223	3	4	24	1	0	0	0	0	1	0	0	0	10405	962	34	3	1831	3	NFKB2	10	104160223	Missense_Mutation	SNP	G	TCGA-OR-A5JX-01A-11D-A29I-10		104160223	31374524	60	4025										
GPAM	57678	bcgsc.ca	37	chr10	113920465	113920465	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0925925925925926	10	0.584916894053224	1.4920922997148	3.9336978810663	0.920652695568709	1	1	0	ggggtgataaaaaactcatcGttcctgctagtgtgggtgat	13	6	1	2	rs2277207	byfrequency	TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	.	GPAM-92	NM_001244949	exon16	c.C1656T	p.N552N	CTCATCGTTCCTG	.	305	9	267	3	G|0.445;A|0.555	1	1	0	0	0	A	113920465	G	A	113920465	2	1	24	1	0	0	0	0	0	0	0	1	6608	1136	40	1		1	GPAM	10	113920465	Silent	SNP	G	TCGA-OR-A5JX-01A-11D-A29I-10	9760242	113920465	21614282	61	4026										
JAKMIP3	282973	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	133951636	133951636	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0925925925925926	10	0.584916894053224	1.4920922997148	3.9336978810663	0.920652695568709	1	1	0	tccgcaggagcgggacaagcTgttaagattccggaagcaaa	13	9	0	1	novel		TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	.	JAKMIP3-23	NM_001105521	exon8	c.T1298A	p.L433Q	ACAAGCTGTTAAG	.	95	18	103	0	.	0	0	0	0	0	A	133951636	T	A	133951636	3	1	24	1	0	0	0	0	1	0	0	0	7963	1580	55	5	1328	5	JAKMIP3	10	133951636	Missense_Mutation	SNP	T	TCGA-OR-A5JX-01A-11D-A29I-10	20031171	133951636	1583111	62	4027										
MUC6	4588	bcgsc.ca	37	chr11	1016871	1016871	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0925925925925926	10	0.584916894053224	1.4920922997148	3.9336978810663	0.920652695568709	1	1	0	taggacctgtggaagagaagGgactgctccctgtaggtggg	17	7	0	1	novel		TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	.	MUC6-23	NM_005961	exon31	c.C5930A	p.P1977H	GAGAAGGGACTGC	.	1100	38	1925	43	.	0	0	0	0	0	T	1016871	G	T	1016871	3	4	24	1	0	0	0	0	1	0	0	0	10008	1232	43	3	1401	3	MUC6	11	1016871	Missense_Mutation	SNP	G	TCGA-OR-A5JX-01A-11D-A29I-10		1016871	133989645	63	4028										
RAPSN	5913	ucsc.edu	37	chr11	47469439	47469439	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0925925925925926	10	0.584916894053224	1.4920922997148	3.9336978810663	0.920652695568709	1	1	0	gcgtcatcattgttgtgggcAtagcgcagggccttctcgaa	13	10	3	0	rs7111873	byfrequency	TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	.	RAPSN-91	NM_032645	exon2	c.T456C	p.Y152Y	GTGGGCATAGCGC	.	48	5	59	1	A|0.389;G|0.611	0	0	0	0	0	G	47469439	A	G	47469439	2	3	24	1	0	0	0	0	0	0	0	1	13086	224	8	4		4	RAPSN	11	47469439	Silent	SNP	A	TCGA-OR-A5JX-01A-11D-A29I-10	46452568	47469439	87537077	64	4029										
CCDC88B	283234	hgsc.bcm.edu	37	chr11	64112394	64112394	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0925925925925926	10	0.584916894053224	1.4920922997148	3.9336978810663	0.920652695568709	1	1	0	ctgggagcaagcccggctgcGggaggcagtggaggctgctg	20	10	0	0	rs143386417		TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	.	CCDC88B-94	NM_032251	exon14	c.G2381A	p.R794Q	GGCTGCGGGAGGC	.	14	9	0	0	G|0.991;A|0.009	0	0	0	0	0	A	64112394	G	A	64112394	3	1	24	1	0	0	0	0	1	0	0	0	2870	1116	39	1	2435	1	CCDC88B	11	64112394	Missense_Mutation	SNP	G	TCGA-OR-A5JX-01A-11D-A29I-10	16642955	64112394	70894122	65	4030										
C2CD3	26005	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	73829294	73829294	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0925925925925926	10	0.584916894053224	1.4920922997148	3.9336978810663	0.920652695568709	1	1	0	tatttctcttgcctgctgacCtcttcttcagcttatgatca	5	12	5	2	novel		TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	.	C2CD3-75	NM_015531	exon9	c.G1499C	p.R500T	GCTGACCTCTTCT	.	133	27	102	0	.	0	0	0	0	0	G	73829294	C	G	73829294	3	3	24	1	0	0	0	0	1	0	0	0	2160	681	24	3	4484	3	C2CD3	11	73829294	Missense_Mutation	SNP	C	TCGA-OR-A5JX-01A-11D-A29I-10	9716900	73829294	61177222	66	4031			1	17		2	2	20	C		6.62839e-05
C2CD3	26005	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	73829313	73829313	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0925925925925926	10	0.584916894053224	1.4920922997148	3.9336978810663	0.920652695568709	1	1	0	cctcttcttcagcttatgatCacttgactccagaaccttag	5	13	4	3	novel		TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	.	C2CD3-75	NM_015531	exon9	c.G1480A	p.D494N	TATGATCACTTGA	.	141	32	116	0	.	0	0	0	0	0	T	73829313	C	T	73829313	3	4	24	1	0	0	0	0	1	0	0	0	2160	826	29	3	4503	3	C2CD3	11	73829313	Missense_Mutation	SNP	C	TCGA-OR-A5JX-01A-11D-A29I-10	19	73829313	61177203	67	4032			1	17		2	2	20	C		6.62839e-05
PDZRN4	29951	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	41966628	41966628	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0925925925925926	10	0.584916894053224	1.4920922997148	3.9336978810663	0.920652695568709	1	1	0	ttgagcttgagtgtcagaatAtcatgcaggctcacaggctc	11	9	3	3	novel		TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	.	PDZRN4-296	NM_001164595	exon10	c.A2047G	p.I683V	CAGAATATCATGC	.	244	61	169	2	.	0	0	0	0	0	G	41966628	A	G	41966628	3	3	24	1	0	0	0	0	1	0	0	0	11739	449	16	4	2158	4	PDZRN4	12	41966628	Missense_Mutation	SNP	A	TCGA-OR-A5JX-01A-11D-A29I-10		41966628	91885267	68	4033										
RACGAP1	29127	broad.mit.edu	37	chr12	50400412	50400412	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0925925925925926	10	0.584916894053224	1.4920922997148	3.9336978810663	0.920652695568709	1	1	0	tcaaagtccttcgccaactgGataaattctgaggaaagggg	11	8	2	1	novel		TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	.	RACGAP1-227	NM_013277	exon5	c.C93T	p.I31I	CAACTGGATAAAT	.	61	6	36	0	.	0	0	0	0	0	A	50400412	G	A	50400412	2	1	24	1	0	0	0	0	0	0	0	1	13012	1164	41	3		3	RACGAP1	12	50400412	Silent	SNP	G	TCGA-OR-A5JX-01A-11D-A29I-10	8433784	50400412	83451483	69	4034										
SOAT2	8435	hgsc.bcm.edu	37	chr12	53509339	53509340	+	Silent	DNP	GC	GC	TT													0.0925925925925926	10	0.584916894053224	1.4920922997148	3.9336978810663	0.920652695568709	1	1	0	acgggcctgggctgtgcgctGctagccgcccacgccgtggt					rs34924760		TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	GC	GC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	.	SOAT2-91	NM_003578	exon6	c.C610T	p.A202A	GCGCTGCTAGCCG	.	17	7	0	0	C|0.787;T|0.213	0	0	0	0	0	TT	53509340	GC	TT	53509339	2	4	24	1	0	0	0	0	0	0	0	1	14946	1306	46	3		3	SOAT2	12	53509339	Silent	DNP	GC	TCGA-OR-A5JX-01A-11D-A29I-10	3108927	53509339	80342556	70	4035										
HOXC11	3227	hgsc.bcm.edu	37	chr12	54367597	54367597	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0925925925925926	10	0.584916894053224	1.4920922997148	3.9336978810663	0.920652695568709	1	1	0	cccggcctcgggactggcgtCccgggctgaggcgggtgccg	19	15	0	1	novel		TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	.	HOXC11-683	NM_014212	exon1	c.C572T	p.S191F	TGGCGTCCCGGGC	.	8	6	0	0	.	0	0	0	0	0	T	54367597	C	T	54367597	3	4	24	1	0	0	0	0	1	0	0	0	7331	855	30	3	574	3	HOXC11	12	54367597	Missense_Mutation	SNP	C	TCGA-OR-A5JX-01A-11D-A29I-10	858258	54367597	79484298	71	4036										
GLIPR1	11010	broad.mit.edu	37	chr12	75892747	75892747	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0925925925925926	10	0.584916894053224	1.4920922997148	3.9336978810663	0.920652695568709	1	1	0	acaagtaccctaatttagttCttttggactaatacaattca	4	8	2	0	rs200527675	alternate_allele	TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	.	GLIPR1-159	NM_006851	exon6	c.C790G	p.L264V	TTAGTTCTTTTGG	.	48	3	30	0	C|0.999;A|0.001	29	29	0	0	0	G	75892747	C	G	75892747	3	3	24	1	0	0	0	0	1	0	0	0	6461	913	32	3	812	3	GLIPR1	12	75892747	Missense_Mutation	SNP	C	TCGA-OR-A5JX-01A-11D-A29I-10	21525150	75892747	57959148	72	4037										
AKAP11	11215	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr13	42874405	42874405	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0925925925925926	10	0.584916894053224	1.4920922997148	3.9336978810663	0.920652695568709	1	1	0	ctcagttcttcgtacccaccAtactaataccctatcaaata	2	14	3	0	novel		TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	.	AKAP11-227	NM_016248	exon8	c.A1523G	p.H508R	CCCACCATACTAA	.	75	20	51	0	.	0	0	0	0	0	G	42874405	A	G	42874405	3	3	24	1	0	0	0	0	1	0	0	0	447	217	8	4	1545	4	AKAP11	13	42874405	Missense_Mutation	SNP	A	TCGA-OR-A5JX-01A-11D-A29I-10		42874405	72295473	73	4038										
CYSLTR2	57105	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr13	49281360	49281360	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0925925925925926	10	0.584916894053224	1.4920922997148	3.9336978810663	0.920652695568709	1	1	0	gaccgtgctgagtgttgtgcGtttcctggcaatggttcacc	13	10	1	1	rs201503697		TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	.	CYSLTR2-278	NM_020377	exon1	c.G407A	p.R136H	TTGTGCGTTTCCT	.	116	32	99	0	.	0	0	0	0	0	A	49281360	G	A	49281360	3	1	24	1	0	0	0	0	1	0	0	0	4208	1145	40	1	409	1	CYSLTR2	13	49281360	Missense_Mutation	SNP	G	TCGA-OR-A5JX-01A-11D-A29I-10	6406955	49281360	65888518	74	4039										
KLHL28	54813	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr14	45403706	45403706	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0925925925925926	10	0.584916894053224	1.4920922997148	3.9336978810663	0.920652695568709	1	1	0	tccaaattcatagcgaggaaTgtttaggggtgccaaaccaa	10	8	1	0	novel		TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	.	KLHL28-91	NM_017658	exon3	c.A955G	p.I319V	GAGGAATGTTTAG	.	132	47	100	0	.	1	1	0	0	0	C	45403706	T	C	45403706	3	2	24	1	0	0	0	0	1	0	0	0	8403	1464	51	4	772	4	KLHL28	14	45403706	Missense_Mutation	SNP	T	TCGA-OR-A5JX-01A-11D-A29I-10		45403706	61945834	75	4040										
FANCM	57697	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr14	45639809	45639809	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0925925925925926	10	0.584916894053224	1.4920922997148	3.9336978810663	0.920652695568709	1	1	0	taggaatgaggcaaagtagcCtaaagaaagattggttctta	11	4	1	3	novel		TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	.	FANCM-569	NM_020937	exon12	c.C2020A	p.L674I	AGTAGCCTAAAGA	.	106	34	98	0	.	0	0	0	0	0	A	45639809	C	A	45639809	3	1	24	1	0	0	0	0	1	0	0	0	5690	680	24	3	2066	3	FANCM	14	45639809	Missense_Mutation	SNP	C	TCGA-OR-A5JX-01A-11D-A29I-10	236103	45639809	61709731	76	4041										
FBXO34	55030	bcgsc.ca	37	chr14	55818706	55818706	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0925925925925926	10	0.584916894053224	1.4920922997148	3.9336978810663	0.920652695568709	1	1	0	gtctgctgagccatttgtacTgccagcctcttctgtggaaa	10	11	3	1	rs3742569	byfrequency	TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	.	FBXO34-228	NM_017943	exon2	c.T1598C	p.L533P	TTGTACTGCCAGC	.	149	8	202	2	T|0.582;C|0.418	1	1	0	0	0	C	55818706	T	C	55818706	3	2	24	1	0	0	0	0	1	0	0	0	5763	1580	55	4	1600	4	FBXO34	14	55818706	Missense_Mutation	SNP	T	TCGA-OR-A5JX-01A-11D-A29I-10	10178897	55818706	51530834	77	4042										
ATG2B	55102	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr14	96800204	96800204	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0925925925925926	10	0.584916894053224	1.4920922997148	3.9336978810663	0.920652695568709	1	1	0	tagctaaccctattttgctaGaattttctataagcatacaa	4	8	1	1	novel		TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	.	ATG2B-93	NM_018036	exon8	c.C1028G	p.S343C	TTGCTAGAATTTT	.	41	15	19	0	.	0	0	0	0	0	C	96800204	G	C	96800204	3	2	24	1	0	0	0	0	1	0	0	0	1095	942	33	3	5348	3	ATG2B	14	96800204	Missense_Mutation	SNP	G	TCGA-OR-A5JX-01A-11D-A29I-10	40981498	96800204	10549336	78	4043										
EIF2AK4	440275	bcgsc.ca	37	chr15	40259848	40259848	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0925925925925926	10	0.584916894053224	1.4920922997148	3.9336978810663	0.920652695568709	1	1	0	atgcagaaggcaccgtcaagAttacggactatagcatttct	9	9	2	2	rs2291627	byfrequency	TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	.	EIF2AK4-757	NM_001013703	exon9	c.A1321C	p.I441L	GTCAAGATTACGG	.	122	6	184	2	C|0.219;N|0.000	0	0	0	0	0	C	40259848	A	C	40259848	3	2	24	1	0	0	0	0	1	0	0	0	5010	333	12	5	1355	5	EIF2AK4	15	40259848	Missense_Mutation	SNP	A	TCGA-OR-A5JX-01A-11D-A29I-10		40259848	62271544	79	4044										
ZNF205	7755	hgsc.bcm.edu;broad.mit.edu	37	chr16	3169885	3169896	+	In_Frame_Del	DEL	CACCCACCAGGG	CACCCACCAGGG	-													0.0925925925925926	10	0.584916894053224	1.4920922997148	3.9336978810663	0.920652695568709	1	1	0	acccgccgctcggacttggtCacccaccagggcacccacac					novel		TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	CACCCACCAGGG	CACCCACCAGGG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	.	ZNF205-90	NM_003456	exon7	c.1224_1235del	p.408_412del	CTTGGTCACCCAC	.	117	52	8	0	.	0	0	0	0	0	-	3169896	CACCCACCAGGG	-	3169885	7	5	24	1	0	1	0	1	0	0	0	0	17801	813	29	0	1246	0	ZNF205	16	3169885	In_Frame_Del	DEL	CACCCACCAGGG	TCGA-OR-A5JX-01A-11D-A29I-10		3169885	87184868	80	4045										
TMC5	79838	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr16	19492710	19492710	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0925925925925926	10	0.584916894053224	1.4920922997148	3.9336978810663	0.920652695568709	1	1	0	agaatcattgggatgcaactGatcacaagtcttggccttca	9	9	4	2	novel		TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	.	TMC5-91	NM_001105249	exon15	c.G2286C	p.L762L	GCAACTGATCACA	.	248	50	210	0	.	0	0	0	0	0	C	19492710	G	C	19492710	2	2	24	1	0	0	0	0	0	0	0	1	16025	1277	45	3		3	TMC5	16	19492710	Silent	SNP	G	TCGA-OR-A5JX-01A-11D-A29I-10	16322825	19492710	70862043	81	4046										
CCDC102A	92922	hgsc.bcm.edu	37	chr16	57562804	57562804	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0925925925925926	10	0.584916894053224	1.4920922997148	3.9336978810663	0.920652695568709	1	1	0	ggcagtgcagtccgaccaccGgcgcatggtcttctccatct	11	15	3	0	rs12935069		TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	.	CCDC102A-91	NM_033212	exon2	c.C286T	p.R96W	ACCACCGGCGCAT	.	6	6	0	0	G|0.001;A|0.999	0	0	0	0	0	A	57562804	G	A	57562804	3	1	24	1	0	0	0	0	1	0	0	0	2742	1115	39	1	1398	1	CCDC102A	16	57562804	Missense_Mutation	SNP	G	TCGA-OR-A5JX-01A-11D-A29I-10	38070094	57562804	32791949	82	4047										
CDH5	1003	bcgsc.ca	37	chr16	66432424	66432424	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0925925925925926	10	0.584916894053224	1.4920922997148	3.9336978810663	0.920652695568709	1	1	0	aacgtgaagttcaaattcatCttgaatactgagaacaactt	6	7	3	3	rs3826229	byfrequency	TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	.	CDH5-525	NM_001795	exon10	c.C1551T	p.I517I	ATTCATCTTGAAT	.	289	9	240	3	A|0.000;C|0.632;G|0.000;T|0.368	0	0	0	0	0	T	66432424	C	T	66432424	2	4	24	1	0	0	0	0	0	0	0	1	3119	903	32	3		3	CDH5	16	66432424	Silent	SNP	C	TCGA-OR-A5JX-01A-11D-A29I-10	8869620	66432424	23922329	83	4048										
ALOX15	246	bcgsc.ca	37	chr17	4536241	4536241	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0925925925925926	10	0.584916894053224	1.4920922997148	3.9336978810663	0.920652695568709	1	1	0	tcgtctttcacagccacgtcTgtcttatagtggagactcac	8	12	5	1	rs743646	byfrequency	TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	.	ALOX15-229	NM_001140	exon11	c.A1455G	p.T485T	CACGTCTGTCTTA	.	127	6	126	0	T|0.920;C|0.080	0	0	0	0	0	C	4536241	T	C	4536241	2	2	24	1	0	0	0	0	0	0	0	1	538	1567	55	4		4	ALOX15	17	4536241	Silent	SNP	T	TCGA-OR-A5JX-01A-11D-A29I-10		4536241	76658969	84	4049										
KRTAP4-8	728224	ucsc.edu	37	chr17	39254133	39254133	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0925925925925926	10	0.584916894053224	1.4920922997148	3.9336978810663	0.920652695568709	1	1	0	cagcagctggacacacagcaGctggggcgacagcaggtggg	17	11	0	0	rs200462175		TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	.	.	NM_031960	exon1	c.C204A	p.S68R	ACAGCAGCTGGGG	.	87	16	22	1	.	0	0	0	0	0	T	39254133	G	T	39254133	3	4	24	1	0	0	0	0	1	0	0	0	8578	962	34	3	357	3	KRTAP4-8	17	39254133	Missense_Mutation	SNP	G	TCGA-OR-A5JX-01A-11D-A29I-10	34717892	39254133	41941077	85	4050										
ICT1	3396	hgsc.bcm.edu	37	chr17	73008804	73008804	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0925925925925926	10	0.584916894053224	1.4920922997148	3.9336978810663	0.920652695568709	1	1	0	ggcggccaccaggtgcctgcGctggggcctgagccgagccg	18	15	0	1	rs3744206	byfrequency	TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	.	ICT1-91	NM_001545	exon1	c.G23T	p.R8L	GCCTGCGCTGGGG	.	19	15	1	0	C|0.010;G|0.987;T|0.003	14	1	13	0	0	T	73008804	G	T	73008804	3	4	24	1	0	0	0	0	1	0	0	0	7509	1087	38	2	25	2	ICT1	17	73008804	Missense_Mutation	SNP	G	TCGA-OR-A5JX-01A-11D-A29I-10	33754671	73008804	8186406	86	4051										
AATK	9625	hgsc.bcm.edu	37	chr17	79096344	79096344	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0925925925925926	10	0.584916894053224	1.4920922997148	3.9336978810663	0.920652695568709	1	1	0	gtctcggtcaccgtcagcacGtcgtcgccgtccgcgtggaa	13	15	3	0	novel		TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	.	AATK-933	NM_001080395	exon11	c.C1392T	p.D464D	CAGCACGTCGTCG	.	15	9	4	0	.	0	0	0	0	0	A	79096344	G	A	79096344	2	1	24	1	0	0	0	0	0	0	0	1	26	1136	40	1		1	AATK	17	79096344	Silent	SNP	G	TCGA-OR-A5JX-01A-11D-A29I-10	6087540	79096344	2098866	87	4052										
TSHZ1	10194	bcgsc.ca	37	chr18	72998268	72998268	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0925925925925926	10	0.584916894053224	1.4920922997148	3.9336978810663	0.920652695568709	1	1	0	gagatggaggggaaggaggaTgcccagaaggtgctgaagtg	20	4	0	3	rs3744909	byfrequency	TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	.	TSHZ1-90	NM_005786	exon2	c.T771C	p.D257D	GGAGGATGCCCAG	.	117	5	280	3	T|0.676;C|0.324	0	0	0	0	0	C	72998268	T	C	72998268	2	2	24	1	0	0	0	0	0	0	0	1	16661	1461	51	4		4	TSHZ1	18	72998268	Silent	SNP	T	TCGA-OR-A5JX-01A-11D-A29I-10		72998268	5078980	88	4053										
MUC16	94025	bcgsc.ca	37	chr19	9003645	9003645	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0925925925925926	10	0.584916894053224	1.4920922997148	3.9336978810663	0.920652695568709	1	1	0	cctcctcatactgcaggttaGtgatggtaaaattgagggtg	12	7	1	2	rs11085777	byfrequency	TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	.	MUC16-566	NM_024690	exon49	c.C39995T	p.T13332I	AGGTTAGTGATGG	.	341	11	284	0	G|0.687;A|0.313	0	0	0	0	0	A	9003645	G	A	9003645	3	1	24	1	0	0	0	0	1	0	0	0	10001	1029	36	3	3672	3	MUC16	19	9003645	Missense_Mutation	SNP	G	TCGA-OR-A5JX-01A-11D-A29I-10		9003645	50125338	89	4054										
NDUFB7	4713	bcgsc.ca	37	chr19	14677691	14677691	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0925925925925926	10	0.584916894053224	1.4920922997148	3.9336978810663	0.920652695568709	1	1	0	ggtggtgggcgcagtagtccCgcagctggagcctcagctgc	17	12	1	0	novel		TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	.	NDUFB7-91	NM_004146	exon2	c.G167A	p.R56Q	TAGTCCCGCAGCT	.	67	4	47	0	.	775	775	0	0	0	T	14677691	C	T	14677691	3	4	24	1	0	0	0	0	1	0	0	0	10315	652	23	1	254	1	NDUFB7	19	14677691	Missense_Mutation	SNP	C	TCGA-OR-A5JX-01A-11D-A29I-10	5674046	14677691	44451292	90	4055										
OR10H3	26532	bcgsc.ca	37	chr19	15852363	15852363	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0925925925925926	10	0.584916894053224	1.4920922997148	3.9336978810663	0.920652695568709	1	1	0	ggccacagtttggattgaacGcagactccacacacccatgt	9	13	0	2	rs11670007	byfrequency	TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	.	OR10H3-68	NM_013938	exon1	c.G161A	p.R54H	TTGAACGCAGACT	.	340	10	295	1	G|0.700;A|0.300	0	0	0	0	0	A	15852363	G	A	15852363	3	1	24	1	0	0	0	0	1	0	0	0	10936	1087	38	1	163	1	OR10H3	19	15852363	Missense_Mutation	SNP	G	TCGA-OR-A5JX-01A-11D-A29I-10	1174672	15852363	43276620	91	4056										
RGS9BP	388531	hgsc.bcm.edu	37	chr19	33167455	33167455	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0925925925925926	10	0.584916894053224	1.4920922997148	3.9336978810663	0.920652695568709	1	1	0	tggaagcggacatgcgacgcGcgctggagctgggcgccgcg	19	12	0	0	rs259290	byfrequency	TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	.	RGS9BP-90	NM_207391	exon1	c.G286T	p.A96S	CGACGCGCGCTGG	.	6	6	0	0	G|0.540;T|0.460	0	0	0	0	0	T	33167455	G	T	33167455	3	4	24	1	0	0	0	0	1	0	0	0	13349	1087	38	2	288	2	RGS9BP	19	33167455	Missense_Mutation	SNP	G	TCGA-OR-A5JX-01A-11D-A29I-10	17315092	33167455	25961528	92	4057										
ACTN4	81	ucsc.edu;bcgsc.ca	37	chr19	39214253	39214253	+	Splice_Site	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0925925925925926	10	0.584916894053224	1.4920922997148	3.9336978810663	0.920652695568709	1	1	0	tgctctctgcccggcccgcaGcgagctggattactacgact	11	15	1	0	novel		TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	.	ACTN4-90	NM_004924	exon13	c.1443-1G>T	.	CCCGCAGCGAGCT	.	560	135	440	2	.	15	0	15	0	0	T	39214253	G	T	39214253	5	4	24	1	0	0	0	0	0	0	1	0	207	985	34	3	1492	3	ACTN4	19	39214253	Splice_Site	SNP	G	TCGA-OR-A5JX-01A-11D-A29I-10	6046798	39214253	19914730	93	4058										
FBXO17	115290	hgsc.bcm.edu	37	chr19	39440918	39440918	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0925925925925926	10	0.584916894053224	1.4920922997148	3.9336978810663	0.920652695568709	1	1	0	agcgcgtccagggccagggaTgggtccgccggcagccgtcg	18	14	0	0	rs2304117	byfrequency	TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	.	FBXO17-226	NM_148169	exon2	c.A69G	p.P23P	CAGGGATGGGTCC	.	7	5	0	0	T|0.545;C|0.455	0	0	0	0	0	C	39440918	T	C	39440918	2	2	24	1	0	0	0	0	0	0	0	1	5749	1451	51	4		4	FBXO17	19	39440918	Silent	SNP	T	TCGA-OR-A5JX-01A-11D-A29I-10	226665	39440918	19688065	94	4059										
POU2F2	5452	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	42603760	42603760	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0925925925925926	10	0.584916894053224	1.4920922997148	3.9336978810663	0.920652695568709	1	1	0	agctggaatagatttggtgtCggtagcaggcctggaaagac	15	6	0	2	novel		TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	.	POU2F2-227	NM_002698	exon7	c.G420A	p.P140P	TGGTGTCGGTAGC	.	166	33	127	0	.	0	0	0	0	0	T	42603760	C	T	42603760	2	4	24	1	0	0	0	0	0	0	0	1	12301	871	31	1		1	POU2F2	19	42603760	Silent	SNP	C	TCGA-OR-A5JX-01A-11D-A29I-10	3162842	42603760	16525223	95	4060										
IRGQ	126298	hgsc.bcm.edu	37	chr19	44098975	44098975	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0925925925925926	10	0.584916894053224	1.4920922997148	3.9336978810663	0.920652695568709	1	1	0	actcacctccgcagcgcttcTgcctggctctgcagcgccgc	10	19	3	0	novel		TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	.	IRGQ-92	NM_001007561	exon2	c.A516G	p.A172A	CGCTTCTGCCTGG	.	59	8	6	0	.	0	0	0	0	0	C	44098975	T	C	44098975	2	2	24	1	0	0	0	0	0	0	0	1	7860	1567	55	4		4	IRGQ	19	44098975	Silent	SNP	T	TCGA-OR-A5JX-01A-11D-A29I-10	1495215	44098975	15030008	96	4061										
ZNF226	7769	ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	44680489	44680489	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0925925925925926	10	0.584916894053224	1.4920922997148	3.9336978810663	0.920652695568709	1	1	0	gttcattgcaaggtccacacGgcagagaaaccttataattg	9	9	1	1	rs2178342	byfrequency;alternate_allele	TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	.	.	NM_001032372	exon6	c.G1074C	p.T358T	CCACACGGCAGAG	.	219	54	180	1	G|0.865;A|0.135	9	6	3	0	0	C	44680489	G	C	44680489	2	2	24	1	0	0	0	0	0	0	0	1	17817	1103	39	2		2	ZNF226	19	44680489	Silent	SNP	G	TCGA-OR-A5JX-01A-11D-A29I-10	581514	44680489	14448494	97	4062										
ZNF814	730051	ucsc.edu	37	chr19	58384418	58384418	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0925925925925926	10	0.584916894053224	1.4920922997148	3.9336978810663	0.920652695568709	1	1	0	aaactggagctttcagcgaaAgattttccacattcactgca	7	10	2	1	novel		TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	.	.	NM_001144989	exon3	c.T2340C	p.S780S	AGCGAAAGATTTT	.	77	1	50	0	.	26	21	5	0	0	G	58384418	A	G	58384418	2	3	24	1	0	0	0	0	0	0	0	1	18213	59	3	4		4	ZNF814	19	58384418	Silent	SNP	A	TCGA-OR-A5JX-01A-11D-A29I-10	13703929	58384418	744565	98	4063										
ZNF814	730051	ucsc.edu	37	chr19	58384712	58384712	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0925925925925926	10	0.584916894053224	1.4920922997148	3.9336978810663	0.920652695568709	1	1	0	acataaggtctttctccagtAtggccatgctggtgtagaat	10	8	2	1	novel		TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	.	.	NM_001144989	exon3	c.T2046C	p.H682H	TCCAGTATGGCCA	.	223	1	163	0	.	12	10	2	0	0	G	58384712	A	G	58384712	2	3	24	1	0	0	0	0	0	0	0	1	18213	446	16	4		4	ZNF814	19	58384712	Silent	SNP	A	TCGA-OR-A5JX-01A-11D-A29I-10	294	58384712	744271	99	4064										
KCNS1	3787	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr20	43727858	43727858	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0925925925925926	10	0.584916894053224	1.4920922997148	3.9336978810663	0.920652695568709	1	1	0	ggttctcatagtgtgttcccCggaccagcagcatcagcatc	10	13	2	0	novel		TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	.	KCNS1-90	NM_002251	exon3	c.G20A	p.R7Q	GTTCCCCGGACCA	.	110	19	102	0	.	0	0	0	0	0	T	43727858	C	T	43727858	3	4	24	1	0	0	0	0	1	0	0	0	8109	652	23	1	1572	1	KCNS1	20	43727858	Missense_Mutation	SNP	C	TCGA-OR-A5JX-01A-11D-A29I-10		43727858	19297662	100	4065										
SYCP2	10388	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr20	58441568	58441568	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0925925925925926	10	0.584916894053224	1.4920922997148	3.9336978810663	0.920652695568709	1	1	0	acctagagtcctgactttgaTgattcattgttctcagatgt	8	8	2	5	novel		TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	.	SYCP2-525	NM_014258	exon39	c.A4202C	p.H1401P	CTTTGATGATTCA	.	42	9	38	0	.	1	1	0	0	0	G	58441568	T	G	58441568	3	3	24	1	0	0	0	0	1	0	0	0	15469	1464	51	5	414	5	SYCP2	20	58441568	Missense_Mutation	SNP	T	TCGA-OR-A5JX-01A-11D-A29I-10	14713710	58441568	4583952	101	4066										
BAGE2	85319	bcgsc.ca	37	chr21	11058322	11058322	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0925925925925926	10	0.584916894053224	1.4920922997148	3.9336978810663	0.920652695568709	1	1	0	agtgcttacaaaatgcacatCgctgaaaggggtaaaggaga	12	6	0	2	rs2951027	byfrequency	TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	.	.	NM_182482	exon3	c.G118A	p.D40N	GCACATCGCTGAA	.	331	11	331	5	C|0.750;T|0.250	0	0	0	0	0	T	11058322	C	T	11058322	3	4	24	1	0	0	0	0	1	0	0	0	1293	898	31	1	219	1	BAGE2	21	11058322	Missense_Mutation	SNP	C	TCGA-OR-A5JX-01A-11D-A29I-10		11058322	37071573	102	4067										
COL6A1	1291	broad.mit.edu	37	chr21	47401845	47401850	+	In_Frame_Del	DEL	GGCCGT	GGCCGT	-													0.0925925925925926	10	0.584916894053224	1.4920922997148	3.9336978810663	0.920652695568709	1	1	0	gatgagccggagaccccgagGgccgtggccttccagggtga					novel		TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	.	COL6A1-91	NM_001848	exon1	c.81_86del	p.27_29del	CCCGAGGGCCGTG	.	120	8	9	0	.	0	0	0	0	0	-	47401850	GGCCGT	-	47401845	7	5	24	1	0	1	0	1	0	0	0	0	3705	1223	43	0	83	0	COL6A1	21	47401845	In_Frame_Del	DEL	GGCCGT	TCGA-OR-A5JX-01A-11D-A29I-10	36343523	47401845	728050	103	4068										
TFIP11	24144	bcgsc.ca	37	chr22	26888060	26888060	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0925925925925926	10	0.584916894053224	1.4920922997148	3.9336978810663	0.920652695568709	1	1	0	acaaagaccactccccggtcGatgtagatcacaatgcggcc	9	14	1	2	rs17850763	byfrequency	TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	.	TFIP11-90	NM_001008697	exon16	c.C2433T	p.I811I	CCGGTCGATGTAG	.	158	9	388	5	G|0.972;A|0.028	18	18	0	0	0	A	26888060	G	A	26888060	2	1	24	1	0	0	0	0	0	0	0	1	15844	1048	37	1		1	TFIP11	22	26888060	Silent	SNP	G	TCGA-OR-A5JX-01A-11D-A29I-10		26888060	24416506	104	4069										
TAB3	257397	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	30873289	30873289	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0925925925925926	10	0.584916894053224	1.4920922997148	3.9336978810663	0.920652695568709	1	1	0	agcagacggattcattcctgTttgcatggaagatggctgtt	12	7	1	2	novel		TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	.	TAB3-131	NM_152787	exon6	c.A493G	p.T165A	TTCCTGTTTGCAT	.	226	101	236	0	.	0	0	0	0	0	C	30873289	T	C	30873289	3	2	24	1	0	0	0	0	1	0	0	0	15534	1725	60	4	1669	4	TAB3	23	30873289	Missense_Mutation	SNP	T	TCGA-OR-A5JX-01A-11D-A29I-10		30873289	124397271	105	4070										
DMD	1756	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	31792220	31792220	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0925925925925926	10	0.584916894053224	1.4920922997148	3.9336978810663	0.920652695568709	1	1	0	tgccagagcaggtacctccaAcatcaaggaagatggcattt	10	10	1	2	novel		TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	.	DMD-265	NM_004006	exon51	c.T7399C	p.L2467L	CCTCCAACATCAA	.	135	13	96	0	.	0	0	0	0	0	G	31792220	A	G	31792220	2	3	24	1	0	0	0	0	0	0	0	1	4591	40	2	4		4	DMD	23	31792220	Silent	SNP	A	TCGA-OR-A5JX-01A-11D-A29I-10	918931	31792220	123478340	106	4071										
CCDC22	28952	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	49099775	49099775	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0925925925925926	10	0.584916894053224	1.4920922997148	3.9336978810663	0.920652695568709	1	1	0	cgggagttccaggcgagtccCctgctgcttccagtccctac	11	16	0	0	novel		TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	.	CCDC22-130	NM_014008	exon6	c.C561T	p.P187P	GAGTCCCCTGCTG	.	157	75	144	0	.	20	12	8	0	0	T	49099775	C	T	49099775	2	4	24	1	0	0	0	0	0	0	0	1	2803	610	22	3		3	CCDC22	23	49099775	Silent	SNP	C	TCGA-OR-A5JX-01A-11D-A29I-10	17307555	49099775	106170785	107	4072										
MTMR8	55613	bcgsc.ca	37	chrX	63488902	63488902	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0925925925925926	10	0.584916894053224	1.4920922997148	3.9336978810663	0.920652695568709	1	1	0	ggtacagatctcttctggtgGctcatcacggacttttagtt	10	9	4	1	novel		TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	.	MTMR8-195	NM_017677	exon14	c.C1630A	p.P544T	CTGGTGGCTCATC	.	116	5	62	1	.	0	0	0	0	0	T	63488902	G	T	63488902	3	4	24	1	0	0	0	0	1	0	0	0	9977	1203	42	3	488	3	MTMR8	23	63488902	Missense_Mutation	SNP	G	TCGA-OR-A5JX-01A-11D-A29I-10	14389127	63488902	91781658	108	4073										
TRMT2B	79979	broad.mit.edu	37	chrX	100297093	100297093	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0925925925925926	10	0.584916894053224	1.4920922997148	3.9336978810663	0.920652695568709	1	1	0	ttcttctgacttttttgtccTttctgacatttcgtggctat	6	9	3	2	novel		TCGA-OR-A5JX-01A-11D-A29I-10	TCGA-OR-A5JX-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e1df717d-71b3-48cf-bb10-d94f741cb2a1	6821dc2c-2d56-428f-9be5-397a135f4404	.	TRMT2B-131	NM_001167972	exon2	c.A186G	p.K62K	TTGTCCTTTCTGA	.	106	6	80	1	.	0	0	0	0	0	C	100297093	T	C	100297093	2	2	24	1	0	0	0	0	0	0	0	1	16604	1606	56	4		4	TRMT2B	23	100297093	Silent	SNP	T	TCGA-OR-A5JX-01A-11D-A29I-10	36808191	100297093	54973467	109	4074										
PRDM16	63976	hgsc.bcm.edu	37	chr1	3329263	3329263	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0902777777777778	13	0.264036200841392	1.75423623995053	3.61407867494824	0.962081128747795	0.472547597169157	1	0	tatggggaacgcaagctgggCgccggcgaggggctgcccca	18	12	0	0	rs115226069	byfrequency;by1000genomes	TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	PRDM16-660	NM_022114	exon9	c.C2502T	p.G834G	GCTGGGCGCCGGC	.	13	9	1	0	C|0.969;T|0.031	0	0	0	0	0	T	3329263	C	T	3329263	2	4	25	1	0	0	0	0	0	0	0	1	12489	755	27	1		1	PRDM16	1	3329263	Silent	SNP	C	TCGA-OR-A5JY-01A-31D-A29I-10		3329263	245921358	1	4075										
MAD2L2	10459	hgsc.bcm.edu;bcgsc.ca	37	chr1	11737631	11737631	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0902777777777778	13	0.264036200841392	1.75423623995053	3.61407867494824	0.962081128747795	0.472547597169157	1	0	gtggcttgacgcagtgcagcGtgtcctggatatactgattc	13	9	0	2	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	MAD2L2-659	NM_006341	exon4	c.C200A	p.T67K	TGCAGCGTGTCCT	.	60	4	52	0	.	78	78	0	0	0	T	11737631	G	T	11737631	3	4	25	1	0	0	0	0	1	0	0	0	9178	1145	40	2	459	2	MAD2L2	1	11737631	Missense_Mutation	SNP	G	TCGA-OR-A5JY-01A-31D-A29I-10	8408368	11737631	237512990	2	4076										
EPB41	2035	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	29424397	29424397	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0902777777777778	13	0.264036200841392	1.75423623995053	3.61407867494824	0.962081128747795	0.472547597169157	1	0	gtgaaatcccaaccaaagacGtccctattgtccacactgag	7	13	0	3	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	EPB41-91	NM_001166005	exon17	c.G2263A	p.V755I	AAAGACGTCCCTA	.	126	67	194	0	.	16	5	11	0	0	A	29424397	G	A	29424397	3	1	25	1	0	0	0	0	1	0	0	0	5164	1145	40	1	2346	1	EPB41	1	29424397	Missense_Mutation	SNP	G	TCGA-OR-A5JY-01A-31D-A29I-10	17686766	29424397	219826224	3	4077										
HOOK1	51361	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	60299091	60299091	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0902777777777778	13	0.264036200841392	1.75423623995053	3.61407867494824	0.962081128747795	0.472547597169157	1	0	ttgtagtttttggggcagcaGatttcagaagcacttatccc	10	8	1	2	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	HOOK1-154	NM_015888	exon5	c.G288C	p.Q96H	GCAGCAGATTTCA	.	81	6	93	0	.	3	3	0	0	0	C	60299091	G	C	60299091	3	2	25	1	0	0	0	0	1	0	0	0	7303	933	33	3	306	3	HOOK1	1	60299091	Missense_Mutation	SNP	G	TCGA-OR-A5JY-01A-31D-A29I-10	30874694	60299091	188951530	4	4078										
WLS	79971	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	68624824	68624824	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0902777777777778	13	0.264036200841392	1.75423623995053	3.61407867494824	0.962081128747795	0.472547597169157	1	0	accttgggagatgtgaaggtGcatttgagtttccgtggtac	14	6	0	3	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	WLS-90	NM_024911	exon3	c.C486T	p.C162C	GAAGGTGCATTTG	.	124	58	176	0	.	145	56	89	0	0	A	68624824	G	A	68624824	2	1	25	1	0	0	0	0	0	0	0	1	17414	1311	46	3		3	WLS	1	68624824	Silent	SNP	G	TCGA-OR-A5JY-01A-31D-A29I-10	8325733	68624824	180625797	5	4079										
FLG2	388698	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	152323852	152323852	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.0902777777777778	13	0.264036200841392	1.75423623995053	3.61407867494824	0.962081128747795	0.472547597169157	1	0	gtctcccgtgaatggcagatCctgactctccatgttgagat	10	11	2	4	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	FLG2-151	NM_001014342	exon3	c.G6410C	p.G2137A	GCAGATCCTGACT	.	405	101	478	0	.	0	0	0	0	0	G	152323852	C	G	152323852	3	3	25	1	0	0	0	0	1	0	0	0	5942	855	30	3	769	3	FLG2	1	152323852	Missense_Mutation	SNP	C	TCGA-OR-A5JY-01A-31D-A29I-10	83699028	152323852	96926769	6	4080										
IER5	51278	hgsc.bcm.edu	37	chr1	181058313	181058313	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0902777777777778	13	0.264036200841392	1.75423623995053	3.61407867494824	0.962081128747795	0.472547597169157	1	0	gccgcccccgcccgccgctcGtgcctcttggccggagaccg	13	21	1	1	rs3747955		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	IER5-227	NM_016545	exon1	c.G275A	p.R92H	CCGCTCGTGCCTC	.	10	8	0	0	G|0.568;A|0.432	8	3	5	0	0	A	181058313	G	A	181058313	3	1	25	1	0	0	0	0	1	0	0	0	7529	1145	40	1	277	1	IER5	1	181058313	Missense_Mutation	SNP	G	TCGA-OR-A5JY-01A-31D-A29I-10	28734461	181058313	68192308	7	4081										
HMCN1	83872	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	186147583	186147583	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0902777777777778	13	0.264036200841392	1.75423623995053	3.61407867494824	0.962081128747795	0.472547597169157	1	0	aacaagtgcctaaaccttgtGcacatcagtgctccaacacc	6	14	1	0	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	HMCN1-113	NM_031935	exon104	c.G15979C	p.A5327P	CCTTGTGCACATC	.	190	95	187	0	.	1	1	0	0	0	C	186147583	G	C	186147583	3	2	25	1	0	0	0	0	1	0	0	0	7241	1319	46	3	16393	3	HMCN1	1	186147583	Missense_Mutation	SNP	G	TCGA-OR-A5JY-01A-31D-A29I-10	5089270	186147583	63103038	8	4082										
C1orf106	55765	hgsc.bcm.edu	37	chr1	200880978	200880978	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0902777777777778	13	0.264036200841392	1.75423623995053	3.61407867494824	0.962081128747795	0.472547597169157	1	0	cgcctggcgagtgggagctgCgccgcgcagccccgggccct	17	17	0	0	rs296520	byfrequency	TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	C1orf106-93	NM_018265	exon9	c.C1654T	p.R552C	GAGCTGCGCCGCG	.	23	23	0	0	C|0.242;T|0.758	0	0	0	0	0	T	200880978	C	T	200880978	3	4	25	1	0	0	0	0	1	0	0	0	1986	768	27	1	1646	1	C1orf106	1	200880978	Missense_Mutation	SNP	C	TCGA-OR-A5JY-01A-31D-A29I-10	14733395	200880978	48369643	9	4083										
PRELP	5549	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	203452909	203452909	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0902777777777778	13	0.264036200841392	1.75423623995053	3.61407867494824	0.962081128747795	0.472547597169157	1	0	aagctggagaacctgctgctCctggatctccagcacaacag	10	13	1	1	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	PRELP-516	NM_201348	exon2	c.C597T	p.L199L	GCTGCTCCTGGAT	.	89	41	89	0	.	2	2	0	0	0	T	203452909	C	T	203452909	2	4	25	1	0	0	0	0	0	0	0	1	12505	842	30	3		3	PRELP	1	203452909	Silent	SNP	C	TCGA-OR-A5JY-01A-31D-A29I-10	2571931	203452909	45797712	10	4084										
OBSCN	84033	hgsc.bcm.edu	37	chr1	228504670	228504670	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0902777777777778	13	0.264036200841392	1.75423623995053	3.61407867494824	0.962081128747795	0.472547597169157	1	0	gcgacgccgtggcctctgcgCggctcaccgtgctgggtggg	18	14	2	0	rs11810627	byfrequency	TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	OBSCN-403	NM_001271223	exon62	c.C16417T	p.R5473W	TCTGCGCGGCTCA	.	14	9	0	0	C|0.643;T|0.357	0	0	0	0	0	T	228504670	C	T	228504670	3	4	25	1	0	0	0	0	1	0	0	0	10841	759	27	1	13744	1	OBSCN	1	228504670	Missense_Mutation	SNP	C	TCGA-OR-A5JY-01A-31D-A29I-10	25051761	228504670	20745951	11	4085										
APOB	338	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	21226106	21226106	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0902777777777778	13	0.264036200841392	1.75423623995053	3.61407867494824	0.962081128747795	0.472547597169157	1	0	gagaggttagcaagccagaaGctgcctcttcttcccaatta	9	11	2	2	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	APOB-175	NM_000384	exon29	c.C12188A	p.A4063D	CCAGAAGCTGCCT	.	91	16	79	0	.	0	0	0	0	0	T	21226106	G	T	21226106	3	4	25	1	0	0	0	0	1	0	0	0	785	971	34	3	1507	3	APOB	2	21226106	Missense_Mutation	SNP	G	TCGA-OR-A5JY-01A-31D-A29I-10		21226106	221973267	12	4086										
CRIM1	51232	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	36764534	36764534	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0902777777777778	13	0.264036200841392	1.75423623995053	3.61407867494824	0.962081128747795	0.472547597169157	1	0	ggtggtgtgccacttcagtgGgaaggcctatgccgacgagg	17	9	1	0	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	CRIM1-118	NM_016441	exon14	c.G2468C	p.G823A	TCAGTGGGAAGGC	.	95	50	147	0	.	13	11	2	0	0	C	36764534	G	C	36764534	3	2	25	1	0	0	0	0	1	0	0	0	3879	1232	43	3	2522	3	CRIM1	2	36764534	Missense_Mutation	SNP	G	TCGA-OR-A5JY-01A-31D-A29I-10	15538428	36764534	206434839	13	4087										
DNAH6	1768	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	84908502	84908502	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0902777777777778	13	0.264036200841392	1.75423623995053	3.61407867494824	0.962081128747795	0.472547597169157	1	0	ccatcttaaatggtttcctgAgtgactttccaccagctgta	7	11	1	2	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	DNAH6-69	NM_001370	exon42	c.A6766G	p.S2256G	TTCCTGAGTGACT	.	105	31	95	0	.	0	0	0	0	0	G	84908502	A	G	84908502	3	3	25	1	0	0	0	0	1	0	0	0	4616	304	11	4	6928	4	DNAH6	2	84908502	Missense_Mutation	SNP	A	TCGA-OR-A5JY-01A-31D-A29I-10	48143968	84908502	158290871	14	4088										
NCKAP5	344148	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	133540078	133540078	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0902777777777778	13	0.264036200841392	1.75423623995053	3.61407867494824	0.962081128747795	0.472547597169157	1	0	tgtactgcttgtttcaaaagTgcttggatgctgagtcctcc	10	9	1	1	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	.	NM_207363	exon14	c.A4306G	p.T1436A	CAAAAGTGCTTGG	.	94	10	92	0	.	0	0	0	0	0	C	133540078	T	C	133540078	3	2	25	1	0	0	0	0	1	0	0	0	10252	1696	59	4	1451	4	NCKAP5	2	133540078	Missense_Mutation	SNP	T	TCGA-OR-A5JY-01A-31D-A29I-10	48631576	133540078	109659295	15	4089										
GTDC1	79712	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	144764748	144764748	+	Splice_Site	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0902777777777778	13	0.264036200841392	1.75423623995053	3.61407867494824	0.962081128747795	0.472547597169157	1	0	aattggcatgccttgacttaCcacctgtgaggccagacaat	9	11	0	3	rs199607709	alternate_allele	TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	GTDC1-91	NM_001164629	exon8	c.875+1G>T	.	GACTTACCACCTG	.	130	61	122	1	.	0	0	0	0	0	A	144764748	C	A	144764748	5	1	25	1	0	0	0	0	0	0	1	0	6872	521	18	3	524	3	GTDC1	2	144764748	Splice_Site	SNP	C	TCGA-OR-A5JY-01A-31D-A29I-10	11224670	144764748	98434625	16	4090										
XIRP2	129446	broad.mit.edu	37	chr2	168098406	168098406	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0902777777777778	13	0.264036200841392	1.75423623995053	3.61407867494824	0.962081128747795	0.472547597169157	1	0	acaaagagatgacaaccccaGccaagcagattaaggtaaag	9	9	0	3	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	XIRP2-104	NM_001199143	exon9	c.G1261T	p.A421S	ACCCCAGCCAAGC	.	51	4	47	0	.	0	0	0	0	0	T	168098406	G	T	168098406	3	4	25	1	0	0	0	0	1	0	0	0	17468	971	34	3	1188	3	XIRP2	2	168098406	Missense_Mutation	SNP	G	TCGA-OR-A5JY-01A-31D-A29I-10	23333658	168098406	75100967	17	4091										
KIF1A	547	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	241728660	241728660	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0902777777777778	13	0.264036200841392	1.75423623995053	3.61407867494824	0.962081128747795	0.472547597169157	1	0	ggtcccggcttactgaggtgTgcgaccagtaggagtagtca	15	9	1	1	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	KIF1A-91	NM_001244008	exon3	c.A176T	p.H59L	GAGGTGTGCGACC	.	129	28	97	0	.	0	0	0	0	0	A	241728660	T	A	241728660	3	1	25	1	0	0	0	0	1	0	0	0	8304	1696	59	5	5076	5	KIF1A	2	241728660	Missense_Mutation	SNP	T	TCGA-OR-A5JY-01A-31D-A29I-10	73630254	241728660	1470713	18	4092										
SNED1	25992	hgsc.bcm.edu	37	chr2	242011084	242011084	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0902777777777778	13	0.264036200841392	1.75423623995053	3.61407867494824	0.962081128747795	0.472547597169157	1	0	cccggcgcgcctgccggagcTgcgcctgctcaatgaccaca	12	18	1	1	rs17440466	byfrequency	TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	SNED1-72	NM_001080437	exon25	c.T3683C	p.L1228P	CGGAGCTGCGCCT	.	17	6	4	0	T|0.877;C|0.123	6	6	0	0	0	C	242011084	T	C	242011084	3	2	25	1	0	0	0	0	1	0	0	0	14880	1580	55	4	3781	4	SNED1	2	242011084	Missense_Mutation	SNP	T	TCGA-OR-A5JY-01A-31D-A29I-10	282424	242011084	1188289	19	4093										
CTNNB1	1499	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	41266136	41266136	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0902777777777778	13	0.264036200841392	1.75423623995053	3.61407867494824	0.962081128747795	0.472547597169157	1	0	gtgccactaccacagctcctTctctgagtggtaaaggcaat	9	12	1	1	rs121913407	bycluster	TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	CTNNB1-24361	NM_001098209	exon3	c.T133C	p.S45P	GCTCCTTCTCTGA	.	155	81	246	0	.	362	127	235	0	0	C	41266136	T	C	41266136	3	2	25	1	0	0	0	0	1	0	0	0	4022	1783	62	4	139	4	CTNNB1	3	41266136	Missense_Mutation	SNP	T	TCGA-OR-A5JY-01A-31D-A29I-10		41266136	156756294	20	4094										
VIPR1	7433	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	42577654	42577654	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0902777777777778	13	0.264036200841392	1.75423623995053	3.61407867494824	0.962081128747795	0.472547597169157	1	0	tgggctggaaccccaaatacCggcacccgtcgggaggcagc	14	14	0	0	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	VIPR1-91	NM_004624	exon13	c.C1255T	p.R419W	AAATACCGGCACC	.	241	74	174	0	.	0	0	0	0	0	T	42577654	C	T	42577654	3	4	25	1	0	0	0	0	1	0	0	0	17207	643	23	1	1305	1	VIPR1	3	42577654	Missense_Mutation	SNP	C	TCGA-OR-A5JY-01A-31D-A29I-10	1311518	42577654	155444776	21	4095										
TKT	7086	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	53269001	53269001	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0902777777777778	13	0.264036200841392	1.75423623995053	3.61407867494824	0.962081128747795	0.472547597169157	1	0	ccacagcctcgtacatacccGaaggcctcgcaccgcttctg	8	18	1	0	rs140465934	byfrequency	TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	TKT-92	NM_001258028	exon6	c.C651T	p.F217F	ATACCCGAAGGCC	.	64	28	90	0	G|1.000;A|0.000	0	0	0	0	0	A	53269001	G	A	53269001	2	1	25	1	0	0	0	0	0	0	0	1	15971	1049	37	1		1	TKT	3	53269001	Silent	SNP	G	TCGA-OR-A5JY-01A-31D-A29I-10	10691347	53269001	144753429	22	4096										
RBP1	5947	bcgsc.ca	37	chr3	139258411	139258411	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0902777777777778	13	0.264036200841392	1.75423623995053	3.61407867494824	0.962081128747795	0.472547597169157	1	0	agccagttggccacaagcggGcgggacggctggagactgcc	17	12	0	1	rs11549984		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	RBP1-514	NM_002899	exon1	c.C150T	p.R50R	AAGCGGGCGGGAC	.	190	7	200	3	G|0.910;A|0.090	108	108	0	0	0	A	139258411	G	A	139258411	2	1	25	1	0	0	0	0	0	0	0	1	13190	1190	42	3		3	RBP1	3	139258411	Silent	SNP	G	TCGA-OR-A5JY-01A-31D-A29I-10	85989410	139258411	58764019	23	4097										
ATR	545	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	142286929	142286929	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0902777777777778	13	0.264036200841392	1.75423623995053	3.61407867494824	0.962081128747795	0.472547597169157	1	0	atttacatctgtaagtatccGgtcaatgaattgacacagaa	7	7	2	3	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	ATR-1139	NM_001184	exon2	c.C127T	p.R43W	GTATCCGGTCAAT	.	130	68	219	0	.	2	1	1	0	0	A	142286929	G	A	142286929	3	1	25	1	0	0	0	0	1	0	0	0	1205	1115	39	1	7991	1	ATR	3	142286929	Missense_Mutation	SNP	G	TCGA-OR-A5JY-01A-31D-A29I-10	3028518	142286929	55735501	24	4098										
TMEM41A	90407	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr3	185212464	185212464	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0902777777777778	13	0.264036200841392	1.75423623995053	3.61407867494824	0.962081128747795	0.472547597169157	1	0	gaatgttcagaattggggccGagaggttcaagaaccagttt	13	6	2	3	rs151156113		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	TMEM41A-90	NM_080652	exon4	c.C521T	p.S174L	GGGGCCGAGAGGT	.	90	6	136	0	G|0.999;A|0.000	85	77	8	0	0	A	185212464	G	A	185212464	3	1	25	1	0	0	0	0	1	0	0	0	16201	1059	37	1	281	1	TMEM41A	3	185212464	Missense_Mutation	SNP	G	TCGA-OR-A5JY-01A-31D-A29I-10	42925535	185212464	12809966	25	4099										
MUC4	4585	bcgsc.ca	37	chr3	195509641	195509641	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0902777777777778	13	0.264036200841392	1.75423623995053	3.61407867494824	0.962081128747795	0.472547597169157	1	0	gggtggtgtcacctgtggatActgaggaaaggctggtgaca	17	6	1	2	rs28414759		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	MUC4-90	NM_018406	exon2	c.T8810C	p.V2937A	GTGGATACTGAGG	.	171	40	266	28	.	0	0	0	0	0	G	195509641	A	G	195509641	3	3	25	1	0	0	0	0	1	0	0	0	10006	391	14	4		4	MUC4	3	195509641	Missense_Mutation	SNP	A	TCGA-OR-A5JY-01A-31D-A29I-10	10297177	195509641	2512789	26	4100										
MUC4	4585	bcgsc.ca	37	chr3	195513154	195513154	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0902777777777778	13	0.264036200841392	1.75423623995053	3.61407867494824	0.962081128747795	0.472547597169157	1	0	gagctgtggatactgaggaaGtgtcggtgacaggaagaggg	19	4	0	3	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	MUC4-90	NM_018406	exon2	c.C5297A	p.T1766N	GAGGAAGTGTCGG	.	699	65	824	27	.	0	0	0	0	0	T	195513154	G	T	195513154	3	4	25	1	0	0	0	0	1	0	0	0	10006	1029	36	3		3	MUC4	3	195513154	Missense_Mutation	SNP	G	TCGA-OR-A5JY-01A-31D-A29I-10	3513	195513154	2509276	27	4101										
PROM1	8842	hgsc.bcm.edu;broad.mit.edu	37	chr4	15982079	15982079	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0902777777777778	13	0.264036200841392	1.75423623995053	3.61407867494824	0.962081128747795	0.472547597169157	1	0	ctccgaatccattcgacgatAgtacttagccagttttaccg	7	12	0	0	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	PROM1-207	NM_006017	exon23	c.T2455G	p.Y819D	GACGATAGTACTT	.	74	4	78	0	.	0	0	0	0	0	C	15982079	A	C	15982079	3	2	25	1	0	0	0	0	1	0	0	0	12587	420	15	5	158	5	PROM1	4	15982079	Missense_Mutation	SNP	A	TCGA-OR-A5JY-01A-31D-A29I-10		15982079	175172197	28	4102										
ZAR1	326340	hgsc.bcm.edu	37	chr4	48492434	48492434	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0902777777777778	13	0.264036200841392	1.75423623995053	3.61407867494824	0.962081128747795	0.472547597169157	1	0	gcgggcggcagctggcagcaGcgcggcaggggctgccttcc	19	14	0	0	rs10008444		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	ZAR1-90	NM_175619	exon1	c.G126C	p.Q42H	GCAGCAGCGCGGC	.	6	6	0	0	G|0.025;C|0.975	0	0	0	0	0	C	48492434	G	C	48492434	3	2	25	1	0	0	0	0	1	0	0	0	17553	962	34	3	128	3	ZAR1	4	48492434	Missense_Mutation	SNP	G	TCGA-OR-A5JY-01A-31D-A29I-10	32510355	48492434	142661842	29	4103										
AMTN	401138	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	71394907	71394907	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0902777777777778	13	0.264036200841392	1.75423623995053	3.61407867494824	0.962081128747795	0.472547597169157	1	0	cattttgcttttagggcactAtcctaagctcagaggaattg	9	8	1	1	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	AMTN-153	NM_212557	exon7	c.A337G	p.I113V	GGCACTATCCTAA	.	581	363	318	2	.	0	0	0	0	0	G	71394907	A	G	71394907	3	3	25	1	0	0	0	0	1	0	0	0	590	449	16	4	359	4	AMTN	4	71394907	Missense_Mutation	SNP	A	TCGA-OR-A5JY-01A-31D-A29I-10	22902473	71394907	119759369	30	4104										
DSPP	1834	bcgsc.ca	37	chr4	88537270	88537270	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0902777777777778	13	0.264036200841392	1.75423623995053	3.61407867494824	0.962081128747795	0.472547597169157	1	0	gacagcagtgaaagcagcgaCagcagtgacagcagcgacag	14	10	0	2	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	DSPP-90	NM_014208	exon5	c.C3456T	p.D1152D	CAGCGACAGCAGT	.	839	109	472	5	.	0	0	0	0	0	T	88537270	C	T	88537270	2	4	25	1	0	0	0	0	0	0	0	1	4793	477	17	3		3	DSPP	4	88537270	Silent	SNP	C	TCGA-OR-A5JY-01A-31D-A29I-10	17142363	88537270	102617006	31	4105										
MEPE	56955	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	88767172	88767172	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0902777777777778	13	0.264036200841392	1.75423623995053	3.61407867494824	0.962081128747795	0.472547597169157	1	0	ccctcaaaagagaaaagaaaAgaaggcagtagtgatgcagc	11	7	1	4	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	MEPE-93	NM_020203	exon4	c.A1152T	p.K384N	AAGAAAAGAAGGC	.	614	80	290	1	.	0	0	0	0	0	T	88767172	A	T	88767172	3	4	25	1	0	0	0	0	1	0	0	0	9506	69	3	5	1162	5	MEPE	4	88767172	Missense_Mutation	SNP	A	TCGA-OR-A5JY-01A-31D-A29I-10	229902	88767172	102387104	32	4106										
CYP2U1	113612	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr4	108853207	108853216	+	Frame_Shift_Del	DEL	GCGCGAGGCG	GCGCGAGGCG	-													0.0902777777777778	13	0.264036200841392	1.75423623995053	3.61407867494824	0.962081128747795	0.472547597169157	1	0	ctcagcgacttccacagcgtGcgcgaggcgctggtgcagca					novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	GCGCGAGGCG	GCGCGAGGCG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	CYP2U1-90	NM_183075	exon1	c.408_417del	p.136_139del	CAGCGTGCGCGAG	.	161	29	202	0	.	0	0	0	0	0	-	108853216	GCGCGAGGCG	-	108853207	7	5	25	1	0	1	0	1	0	0	0	0	4181	1306	46	0	410	0	CYP2U1	4	108853207	Frame_Shift_Del	DEL	GCGCGAGGCG	TCGA-OR-A5JY-01A-31D-A29I-10	20086035	108853207	82301069	33	4107										
GUCY1A3	2982	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	156618116	156618116	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0902777777777778	13	0.264036200841392	1.75423623995053	3.61407867494824	0.962081128747795	0.472547597169157	1	0	ctaacgagtcttcagaggagGcagcaggaagctcagagagc	14	9	3	2	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	GUCY1A3-93	NM_001130687	exon3	c.G97A	p.A33T	GAGGAGGCAGCAG	.	129	33	210	0	.	3	3	0	0	0	A	156618116	G	A	156618116	3	1	25	1	0	0	0	0	1	0	0	0	6915	1203	42	3	99	3	GUCY1A3	4	156618116	Missense_Mutation	SNP	G	TCGA-OR-A5JY-01A-31D-A29I-10	47764909	156618116	34536160	34	4108										
STOX2	56977	bcgsc.ca	37	chr4	184931818	184931818	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0902777777777778	13	0.264036200841392	1.75423623995053	3.61407867494824	0.962081128747795	0.472547597169157	1	0	tgcaacacctctagtgagacGgtgctcacggcaccatcacc	9	15	3	1	rs4861597	byfrequency	TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	STOX2-22	NM_020225	exon3	c.G1827A	p.T609T	TGAGACGGTGCTC	.	209	8	433	4	G|0.583;A|0.417	0	0	0	0	0	A	184931818	G	A	184931818	2	1	25	1	0	0	0	0	0	0	0	1	15357	1103	39	1		1	STOX2	4	184931818	Silent	SNP	G	TCGA-OR-A5JY-01A-31D-A29I-10	28313702	184931818	6222458	35	4109										
NSUN2	54888	hgsc.bcm.edu	37	chr5	6633042	6633042	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0902777777777778	13	0.264036200841392	1.75423623995053	3.61407867494824	0.962081128747795	0.472547597169157	1	0	tcggcgccatcctccgcgtcCtccggccgctgctgttgctg	12	18	0	0	rs10062086	byfrequency	TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	NSUN2-91	NM_017755	exon1	c.G51A	p.E17E	CGCGTCCTCCGGC	.	8	8	0	0	C|0.687;T|0.313	18	0	18	0	0	T	6633042	C	T	6633042	2	4	25	1	0	0	0	0	0	0	0	1	10707	680	24	3		3	NSUN2	5	6633042	Silent	SNP	C	TCGA-OR-A5JY-01A-31D-A29I-10		6633042	174282218	36	4110										
DAB2	1601	bcgsc.ca	37	chr5	39376885	39376906	+	Frame_Shift_Del	DEL	CGCGGGCACAGCAGGTGGCTGC	CGCGGGCACAGCAGGTGGCTGC	-													0.0902777777777778	13	0.264036200841392	1.75423623995053	3.61407867494824	0.962081128747795	0.472547597169157	1	0	gaagtctgctctcccttccgCgcgggcacagcaggtggctg					novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	CGCGGGCACAGCAGGTGGCTGC	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	DAB2-227	NM_001343	exon12	c.1983_2004del	p.661_668del	CTTCCGCGCGGGC	.	127	6	97	0	.	0	0	0	0	0	-	39376906	CGCGGGCACAGCAGGTGGCTGC	-	39376885	7	5	25	1	0	1	0	1	0	0	0	0	4224	755	27	0	320	0	DAB2	5	39376885	Frame_Shift_Del	DEL	CGCGGGCACAGCAGGTGGCTGC	TCGA-OR-A5JY-01A-31D-A29I-10	32743843	39376885	141538375	37	4111										
C6	729	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	41143080	41143080	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0902777777777778	13	0.264036200841392	1.75423623995053	3.61407867494824	0.962081128747795	0.472547597169157	1	0	cccttgaagcactgtgggggCaataggcagacacatttgga	13	9	0	2	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	C6-95	NM_001115131	exon18	c.G2652T	p.L884F	TGGGGGCAATAGG	.	243	35	140	0	.	0	0	0	0	0	A	41143080	C	A	41143080	3	1	25	1	0	0	0	0	1	0	0	0	2321	709	25	3	156	3	C6	5	41143080	Missense_Mutation	SNP	C	TCGA-OR-A5JY-01A-31D-A29I-10	1766195	41143080	139772180	38	4112										
RGS7BP	401190	broad.mit.edu	37	chr5	63802481	63802482	+	Frame_Shift_Ins	INS	-	-	C													0.0902777777777778	13	0.264036200841392	1.75423623995053	3.61407867494824	0.962081128747795	0.472547597169157	1	0	caccgaatgggcgcaaaaagINScgccccagccggtccacccg					novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	RGS7BP-68	NM_001029875	exon1	c.30_31insC	p.K10fs	CAAAAAGCGCCCC	.	185	7	77	0	.	0	0	0	0	0	C	63802482	-	C	63802481	7	5	25	1	0	1	1	0	0	0	0	0	13346	962	34	0	32	0	RGS7BP	5	63802481	Frame_Shift_Ins	INS	-	TCGA-OR-A5JY-01A-31D-A29I-10	22659401	63802481	117112779	39	4113										
CMYA5	202333	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	79028141	79028141	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0902777777777778	13	0.264036200841392	1.75423623995053	3.61407867494824	0.962081128747795	0.472547597169157	1	0	ctgcaatcaagaaagaacagGaacccacagcagcactcact	7	13	2	2	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	CMYA5-77	NM_153610	exon2	c.G3553A	p.E1185K	GAACAGGAACCCA	.	351	43	182	0	.	0	0	0	0	0	A	79028141	G	A	79028141	3	1	25	1	0	0	0	0	1	0	0	0	3596	1175	41	3	3559	3	CMYA5	5	79028141	Missense_Mutation	SNP	G	TCGA-OR-A5JY-01A-31D-A29I-10	15225660	79028141	101887119	40	4114										
RREB1	6239	hgsc.bcm.edu	37	chr6	7230680	7230680	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0902777777777778	13	0.264036200841392	1.75423623995053	3.61407867494824	0.962081128747795	0.472547597169157	1	0	cggccgcggcctgggcggggGccacaagggccgcaagccct	18	16	0	0	rs9502564	byfrequency	TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	RREB1-144	NM_001003700	exon10	c.G2348T	p.G783V	GCGGGGGCCACAA	.	13	7	2	0	G|0.546;T|0.454	5	3	2	0	0	T	7230680	G	T	7230680	3	4	25	1	0	0	0	0	1	0	0	0	13714	1203	42	3	2374	3	RREB1	6	7230680	Missense_Mutation	SNP	G	TCGA-OR-A5JY-01A-31D-A29I-10		7230680	163884387	41	4115										
E2F3	1871	broad.mit.edu	37	chr6	20483017	20483017	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0902777777777778	13	0.264036200841392	1.75423623995053	3.61407867494824	0.962081128747795	0.472547597169157	1	0	tgcagtctgtctgaggatggGggcatgctggcccagtgtca	16	9	3	1	rs149378067	alternate_allele	TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	E2F3-414	NM_001949	exon4	c.G750T	p.G250G	GGATGGGGGCATG	.	105	5	77	0	G|1.000;C|0.000	7	7	0	0	0	T	20483017	G	T	20483017	2	4	25	1	0	0	0	0	0	0	0	1	4879	1219	43	3		3	E2F3	6	20483017	Silent	SNP	G	TCGA-OR-A5JY-01A-31D-A29I-10	13252337	20483017	150632050	42	4116										
HIST1H4B	8366	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	26027447	26027447	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0902777777777778	13	0.264036200841392	1.75423623995053	3.61407867494824	0.962081128747795	0.472547597169157	1	0	acgcttggcacctcccttacCcaaacctttaccgcctttgc	5	18	0	0	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	HIST1H4B-70	NM_003544	exon1	c.G34C	p.G12R	CCTTACCCAAACC	.	117	50	154	0	.	0	0	0	0	0	G	26027447	C	G	26027447	3	3	25	1	0	0	0	0	1	0	0	0	7187	623	22	3	281	3	HIST1H4B	6	26027447	Missense_Mutation	SNP	C	TCGA-OR-A5JY-01A-31D-A29I-10	5544430	26027447	145087620	43	4117										
HLA-B	3106	hgsc.bcm.edu	37	chr6	31324003	31324025	+	Frame_Shift_Del	DEL	TCGCCCTCCAGGTAGGCTCTCCG	TCGCCCTCCAGGTAGGCTCTCCG	-													0.0902777777777778	13	0.264036200841392	1.75423623995053	3.61407867494824	0.962081128747795	0.472547597169157	1	0	tgcggagccactccacgcacTcgccctccaggtaggctctc					novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	TCGCCCTCCAGGTAGGCTCTCCG	TCGCCCTCCAGGTAGGCTCTCCG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	HLA-B-90	NM_005514	exon3	c.538_560del	p.180_187del	ACGCACTCGCCCT	.	74	0	126	0	.	0	0	0	0	0	-	31324025	TCGCCCTCCAGGTAGGCTCTCCG	-	31324003	7	5	25	1	0	1	0	1	0	0	0	0	7217	1551	54	0	548	0	HLA-B	6	31324003	Frame_Shift_Del	DEL	TCGCCCTCCAGGTAGGCTCTCCG	TCGA-OR-A5JY-01A-31D-A29I-10	5296556	31324003	139791064	44	4118										
MICA	100507436	broad.mit.edu	37	chr6	31379115	31379115	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0902777777777778	13	0.264036200841392	1.75423623995053	3.61407867494824	0.962081128747795	0.472547597169157	1	0	tacggcgatatctagaatccGgcgtagtcctgaggagaaca	12	9	1	3	rs1131896	byfrequency	TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	.	NM_001177519	exon3	c.G592A	p.G198S	GAATCCGGCGTAG	.	90	3	177	0	G|0.689;A|0.311	100	98	1	0	1	A	31379115	G	A	31379115	3	1	25	1	0	0	0	0	1	0	0	0	9596	1116	39	1	602	1	MICA	6	31379115	Missense_Mutation	SNP	G	TCGA-OR-A5JY-01A-31D-A29I-10	55112	31379115	139735952	45	4119										
LHFPL5	222662	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	35773835	35773835	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0902777777777778	13	0.264036200841392	1.75423623995053	3.61407867494824	0.962081128747795	0.472547597169157	1	0	cggccacagtctataagatcTgtgcatggatgcagctggct	12	10	2	1	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	LHFPL5-91	NM_182548	exon1	c.T388G	p.C130G	AAGATCTGTGCAT	.	85	14	90	0	.	0	0	0	0	0	G	35773835	T	G	35773835	3	3	25	1	0	0	0	0	1	0	0	0	8791	1580	55	5	390	5	LHFPL5	6	35773835	Missense_Mutation	SNP	T	TCGA-OR-A5JY-01A-31D-A29I-10	4394720	35773835	135341232	46	4120										
PKHD1	5314	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	51920447	51920447	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0902777777777778	13	0.264036200841392	1.75423623995053	3.61407867494824	0.962081128747795	0.472547597169157	1	0	gggagtaaggacaaggtgtcGaggctgacggaggctgaacc	18	7	0	2	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	PKHD1-603	NM_170724	exon19	c.C1774T	p.R592X	GGTGTCGAGGCTG	.	227	73	150	0	.	0	0	0	0	0	A	51920447	G	A	51920447	4	1	25	1	0	0	0	0	0	1	0	0	12000	1066	37	1	10685	1	PKHD1	6	51920447	Nonsense_Mutation	SNP	G	TCGA-OR-A5JY-01A-31D-A29I-10	16146612	51920447	119194620	47	4121										
RIMS1	22999	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	73000415	73000415	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0902777777777778	13	0.264036200841392	1.75423623995053	3.61407867494824	0.962081128747795	0.472547597169157	1	0	tgtctttctagaaggggacaCgcagccccaagagcaactga	11	11	2	3	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	RIMS1-144	NM_014989	exon25	c.C3588T	p.H1196H	GGGACACGCAGCC	.	236	25	149	1	.	0	0	0	0	0	T	73000415	C	T	73000415	2	4	25	1	0	0	0	0	0	0	0	1	13402	535	19	1		1	RIMS1	6	73000415	Silent	SNP	C	TCGA-OR-A5JY-01A-31D-A29I-10	21079968	73000415	98114652	48	4122										
TSPYL4	23270	bcgsc.ca	37	chr6	116574989	116574989	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0902777777777778	13	0.264036200841392	1.75423623995053	3.61407867494824	0.962081128747795	0.472547597169157	1	0	tcgacaggatcctgggatgcAcccccctccgcaacggtctc	10	17	1	0	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	.	NM_021648	exon1	c.T183A	p.G61G	GGATGCACCCCCC	.	49	10	64	0	.	8	8	0	0	0	T	116574989	A	T	116574989	2	4	25	1	0	0	0	0	0	0	0	1	16699	146	6	5		5	TSPYL4	6	116574989	Silent	SNP	A	TCGA-OR-A5JY-01A-31D-A29I-10	43574574	116574989	54540078	49	4123										
DSE	29940	bcgsc.ca	37	chr6	116754523	116754523	+	Missense_Mutation	SNP	G	G	A													0.0902777777777778	13	0.264036200841392	1.75423623995053	3.61407867494824	0.962081128747795	0.472547597169157	1	0	tagggtttcaaaggactgtgGctattgcggactcaaattac					novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	DSE-91	NM_001080976	exon5	c.G928A	p.A310T	ACTGTGGCTATTG	.	87	14	116	0	.	0	0	0	0	0	A	116754523	G	A	116754523	3	1	25	1	0	0	0	0	1	0	0	0	4785	1203	42	3	942	3	DSE	6	116754523	Missense_Mutation	SNP	G	TCGA-OR-A5JY-01A-31D-A29I-10	179534	116754523	54360544	50	4124	33	2								
DSE	29940	bcgsc.ca	37	chr6	116754526	116754526	+	Missense_Mutation	SNP	A	A	T													0.0902777777777778	13	0.264036200841392	1.75423623995053	3.61407867494824	0.962081128747795	0.472547597169157	1	0	ggtttcaaaggactgtggctAttgcggactcaaattacaac					novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	DSE-91	NM_001080976	exon5	c.A931T	p.I311F	GTGGCTATTGCGG	.	90	14	119	0	.	0	0	0	0	0	T	116754526	A	T	116754526	3	4	25	1	0	0	0	0	1	0	0	0	4785	449	16	5	945	5	DSE	6	116754526	Missense_Mutation	SNP	A	TCGA-OR-A5JY-01A-31D-A29I-10	3	116754526	54360541	51	4125	33	2								
HECA	51696	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	139498189	139498189	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0902777777777778	13	0.264036200841392	1.75423623995053	3.61407867494824	0.962081128747795	0.472547597169157	1	0	gtccacactgtgggaacctgGactaccacttcgtgaagcca	10	13	0	1	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	HECA-90	NM_016217	exon4	c.G1579A	p.D527N	AACCTGGACTACC	.	105	32	79	0	.	12	7	5	0	0	A	139498189	G	A	139498189	3	1	25	1	0	0	0	0	1	0	0	0	7059	1174	41	3	1593	3	HECA	6	139498189	Missense_Mutation	SNP	G	TCGA-OR-A5JY-01A-31D-A29I-10	22743663	139498189	31616878	52	4126										
TULP4	56995	bcgsc.ca	37	chr6	158870081	158870081	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0902777777777778	13	0.264036200841392	1.75423623995053	3.61407867494824	0.962081128747795	0.472547597169157	1	0	gtcatggattgccacggcagAatgctggcccacgtcctctt	11	13	2	1	rs705956	byfrequency	TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	TULP4-91	NM_020245	exon4	c.A597G	p.R199R	CGGCAGAATGCTG	.	133	5	193	0	A|0.374;G|0.626	0	0	0	0	0	G	158870081	A	G	158870081	2	3	25	1	0	0	0	0	0	0	0	1	16814	243	9	4		4	TULP4	6	158870081	Silent	SNP	A	TCGA-OR-A5JY-01A-31D-A29I-10	19371892	158870081	12244986	53	4127										
SLC22A3	6581	hgsc.bcm.edu	37	chr6	160769828	160769828	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0902777777777778	13	0.264036200841392	1.75423623995053	3.61407867494824	0.962081128747795	0.472547597169157	1	0	ccgctcggctccccttgtgcCgtgccgcggcggctggcgct	15	18	0	0	rs113898574		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	SLC22A3-517	NM_021977	exon1	c.C377G	p.P126R	TTGTGCCGTGCCG	.	8	6	1	0	C|0.500;G|0.500	7	0	7	0	0	G	160769828	C	G	160769828	3	3	25	1	0	0	0	0	1	0	0	0	14490	652	23	2	379	2	SLC22A3	6	160769828	Missense_Mutation	SNP	C	TCGA-OR-A5JY-01A-31D-A29I-10	1899747	160769828	10345239	54	4128										
SDK1	221935	broad.mit.edu;bcgsc.ca	37	chr7	4153774	4153774	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0902777777777778	13	0.264036200841392	1.75423623995053	3.61407867494824	0.962081128747795	0.472547597169157	1	0	cagtggcccaagtcgtcagtGaccggctggagagagaattc	14	10	1	3	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	SDK1-138	NM_152744	exon25	c.G3691T	p.D1231Y	GTCAGTGACCGGC	.	255	10	170	0	.	0	0	0	0	0	T	4153774	G	T	4153774	3	4	25	1	0	0	0	0	1	0	0	0	14003	1290	45	3	3789	3	SDK1	7	4153774	Missense_Mutation	SNP	G	TCGA-OR-A5JY-01A-31D-A29I-10		4153774	154984889	55	4129										
TNRC18	84629	hgsc.bcm.edu	37	chr7	5353000	5353000	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0902777777777778	13	0.264036200841392	1.75423623995053	3.61407867494824	0.962081128747795	0.472547597169157	1	0	cttgggctcgctgctgccggCcgcggggggatagctgccca	17	14	0	0	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	TNRC18-46	NM_001080495	exon27	c.G7522T	p.A2508S	TGCCGGCCGCGGG	.	60	11	7	0	.	9	9	0	0	0	A	5353000	C	A	5353000	3	1	25	1	0	0	0	0	1	0	0	0	16376	739	26	3	1400	3	TNRC18	7	5353000	Missense_Mutation	SNP	C	TCGA-OR-A5JY-01A-31D-A29I-10	1199226	5353000	153785663	56	4130										
TNS3	64759	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	47408816	47408816	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0902777777777778	13	0.264036200841392	1.75423623995053	3.61407867494824	0.962081128747795	0.472547597169157	1	0	gcatctcgtcatccagaatgTctgtctcccgatccttcaga	7	14	5	2	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	TNS3-94	NM_022748	exon17	c.A1427T	p.D476V	AGAATGTCTGTCT	.	205	38	174	0	.	1	1	0	0	0	A	47408816	T	A	47408816	3	1	25	1	0	0	0	0	1	0	0	0	16381	1667	58	5	2970	5	TNS3	7	47408816	Missense_Mutation	SNP	T	TCGA-OR-A5JY-01A-31D-A29I-10	42055816	47408816	111729847	57	4131										
EPHB6	2051	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	142567581	142567581	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0902777777777778	13	0.264036200841392	1.75423623995053	3.61407867494824	0.962081128747795	0.472547597169157	1	0	acccctcagggcccaagttgTttgcttcgctgggcagcccc	11	16	1	0	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	EPHB6-1489	NM_004445	exon17	c.T2469C	p.C823C	AAGTTGTTTGCTT	.	120	12	132	0	.	0	0	0	0	0	C	142567581	T	C	142567581	2	2	25	1	0	0	0	0	0	0	0	1	5191	1731	60	4		4	EPHB6	7	142567581	Silent	SNP	T	TCGA-OR-A5JY-01A-31D-A29I-10	95158765	142567581	16571082	58	4132										
NOS3	4846	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	150704089	150704089	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0902777777777778	13	0.264036200841392	1.75423623995053	3.61407867494824	0.962081128747795	0.472547597169157	1	0	gtgcaggggccctgggcaccCtcaggtcagggcctcaccaa	14	15	3	0	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	NOS3-1011	NM_000603	exon16	c.C1933G	p.L645V	GGCACCCTCAGGT	.	176	20	133	0	.	0	0	0	0	0	G	150704089	C	G	150704089	3	3	25	1	0	0	0	0	1	0	0	0	10573	681	24	3	2273	3	NOS3	7	150704089	Missense_Mutation	SNP	C	TCGA-OR-A5JY-01A-31D-A29I-10	8136508	150704089	8434574	59	4133										
MYOM2	9172	ucsc.edu;bcgsc.ca	37	chr8	2037833	2037833	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0902777777777778	13	0.264036200841392	1.75423623995053	3.61407867494824	0.962081128747795	0.472547597169157	1	0	ttctgtttctctttgtagtcGgtggtggggagcggcagctg	16	7	2	0	rs2294061	byfrequency	TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	MYOM2-95	NM_003970	exon15	c.G1647C	p.S549S	GTAGTCGGTGGTG	.	18	4	133	0	G|0.783;C|0.217	0	0	0	0	0	C	2037833	G	C	2037833	2	2	25	1	0	0	0	0	0	0	0	1	10120	1103	39	2		2	MYOM2	8	2037833	Silent	SNP	G	TCGA-OR-A5JY-01A-31D-A29I-10		2037833	144326189	60	4134										
CLDN23	137075	hgsc.bcm.edu	37	chr8	8560536	8560536	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0902777777777778	13	0.264036200841392	1.75423623995053	3.61407867494824	0.962081128747795	0.472547597169157	1	0	gcagcgtcagcaccatccaaGtggagtggcccgagcccgac	13	15	1	0	rs12548737	byfrequency	TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	.	NM_194284	exon1	c.G628A	p.V210M	ATCCAAGTGGAGT	.	19	10	0	0	G|0.907;A|0.093	0	0	0	0	0	A	8560536	G	A	8560536	3	1	25	1	0	0	0	0	1	0	0	0	3490	1029	36	3	630	3	CLDN23	8	8560536	Missense_Mutation	SNP	G	TCGA-OR-A5JY-01A-31D-A29I-10	6522703	8560536	137803486	61	4135										
FDFT1	2222	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr8	11689040	11689040	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0902777777777778	13	0.264036200841392	1.75423623995053	3.61407867494824	0.962081128747795	0.472547597169157	1	0	tctctaggtgatggccattgCcactttggctgcctgttata	10	10	1	1	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	FDFT1-90	NM_004462	exon7	c.C893T	p.A298V	CCATTGCCACTTT	.	272	155	176	0	.	1112	337	773	0	2	T	11689040	C	T	11689040	3	4	25	1	0	0	0	0	1	0	0	0	5821	739	26	3	919	3	FDFT1	8	11689040	Missense_Mutation	SNP	C	TCGA-OR-A5JY-01A-31D-A29I-10	3128504	11689040	134674982	62	4136										
PAG1	55824	bcgsc.ca	37	chr8	81905397	81905397	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0902777777777778	13	0.264036200841392	1.75423623995053	3.61407867494824	0.962081128747795	0.472547597169157	1	0	acgaagaaaatggcgacagcAgccagacttccccacagggt	11	12	0	2	rs2016465	byfrequency	TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	.	NM_018440	exon4	c.T66C	p.A22A	GACAGCAGCCAGA	.	80	5	80	0	A|0.513;G|0.487	0	0	0	0	0	G	81905397	A	G	81905397	2	3	25	1	0	0	0	0	0	0	0	1	11417	175	7	4		4	PAG1	8	81905397	Silent	SNP	A	TCGA-OR-A5JY-01A-31D-A29I-10	70216357	81905397	64458625	63	4137										
SLC10A5	347051	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr8	82606283	82606283	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0902777777777778	13	0.264036200841392	1.75423623995053	3.61407867494824	0.962081128747795	0.472547597169157	1	0	gaacattaaaataaaactcaGaggtctaattattctctcta	4	7	4	1	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	SLC10A5-90	NM_001010893	exon1	c.C925G	p.L309V	AACTCAGAGGTCT	.	39	16	30	0	.	0	0	0	0	0	C	82606283	G	C	82606283	3	2	25	1	0	0	0	0	1	0	0	0	14412	933	33	3	393	3	SLC10A5	8	82606283	Missense_Mutation	SNP	G	TCGA-OR-A5JY-01A-31D-A29I-10	700886	82606283	63757739	64	4138										
ZFPM2	23414	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr8	106814462	106814462	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0902777777777778	13	0.264036200841392	1.75423623995053	3.61407867494824	0.962081128747795	0.472547597169157	1	0	ctacacgccacgaccctccaCtgaagaggtctgcttccaac	7	17	1	2	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	ZFPM2-139	NM_012082	exon8	c.C2152G	p.L718V	CCTCCACTGAAGA	.	137	67	131	0	.	1	1	0	0	0	G	106814462	C	G	106814462	3	3	25	1	0	0	0	0	1	0	0	0	17695	564	20	3	2182	3	ZFPM2	8	106814462	Missense_Mutation	SNP	C	TCGA-OR-A5JY-01A-31D-A29I-10	24208179	106814462	39549560	65	4139										
PKHD1L1	93035	bcgsc.ca	37	chr8	110448635	110448635	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0902777777777778	13	0.264036200841392	1.75423623995053	3.61407867494824	0.962081128747795	0.472547597169157	1	0	aggtattagttggaaatgaaAcctgcaatgtgattgaaggg	13	3	0	3	rs10093885	byfrequency	TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	PKHD1L1-145	NM_177531	exon30	c.A3574G	p.T1192A	AATGAAACCTGCA	.	87	4	75	0	A|0.801;G|0.199	0	0	0	0	0	G	110448635	A	G	110448635	3	3	25	1	0	0	0	0	1	0	0	0	12001	43	2	4	3692	4	PKHD1L1	8	110448635	Missense_Mutation	SNP	A	TCGA-OR-A5JY-01A-31D-A29I-10	3634173	110448635	35915387	66	4140										
PLEC	5339	hgsc.bcm.edu	37	chr8	144998169	144998169	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0902777777777778	13	0.264036200841392	1.75423623995053	3.61407867494824	0.962081128747795	0.472547597169157	1	0	cgccgccgctcctcctccgcCgccagctgccgctgcctcgc	10	24	0	0	rs1140522	byfrequency	TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	PLEC-141	NM_201380	exon31	c.G6339A	p.A2113A	CTCCGCCGCCAGC	.	4	4	0	0	C|0.740;T|0.260	4	0	4	0	0	T	144998169	C	T	144998169	2	4	25	1	0	0	0	0	0	0	0	1	12081	639	23	1		1	PLEC	8	144998169	Silent	SNP	C	TCGA-OR-A5JY-01A-31D-A29I-10	34549534	144998169	1365853	67	4141			1	18		2	2	22	N	C_A	9.768005e-05
PLEC	5339	hgsc.bcm.edu	37	chr8	144998190	144998190	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0902777777777778	13	0.264036200841392	1.75423623995053	3.61407867494824	0.962081128747795	0.472547597169157	1	0	gccagctgccgctgcctcgcAgcctccagctcggcctgctc	11	20	0	0	rs2857829	byfrequency	TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	PLEC-141	NM_201380	exon31	c.T6318C	p.A2106A	CCTCGCAGCCTCC	.	9	9	0	0	A|0.738;G|0.262	0	0	0	0	0	G	144998190	A	G	144998190	2	3	25	1	0	0	0	0	0	0	0	1	12081	175	7	4		4	PLEC	8	144998190	Silent	SNP	A	TCGA-OR-A5JY-01A-31D-A29I-10	21	144998190	1365832	68	4142			1	18		2	2	22	N	C_A	9.768005e-05
SCRT1	83482	hgsc.bcm.edu	37	chr8	145557497	145557497	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0902777777777778	13	0.264036200841392	1.75423623995053	3.61407867494824	0.962081128747795	0.472547597169157	1	0	tgtggagggagcggcggcagAgccggcattggaagccttac	18	9	0	1	rs7013127		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	.	NM_031309	exon2	c.T397G	p.S133A	CGGCAGAGCCGGC	.	4	4	0	0	A|0.096;C|0.904	0	0	0	0	0	C	145557497	A	C	145557497	3	2	25	1	0	0	0	0	1	0	0	0	13976	304	11	5	653	5	SCRT1	8	145557497	Missense_Mutation	SNP	A	TCGA-OR-A5JY-01A-31D-A29I-10	559307	145557497	806525	69	4143										
RGP1	9827	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr9	35752652	35752652	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0902777777777778	13	0.264036200841392	1.75423623995053	3.61407867494824	0.962081128747795	0.472547597169157	1	0	tctttttcttccatagtgtcCttgaagtggagattgcattt	8	7	2	2	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	RGP1-23	NM_001080496	exon9	c.C957A	p.S319S	AGTGTCCTTGAAG	.	144	41	150	0	.	0	0	0	0	0	A	35752652	C	A	35752652	2	1	25	1	0	0	0	0	0	0	0	1	13319	668	24	3		3	RGP1	9	35752652	Silent	SNP	C	TCGA-OR-A5JY-01A-31D-A29I-10		35752652	105460779	70	4144										
SLC28A3	64078	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr9	86920229	86920229	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0902777777777778	13	0.264036200841392	1.75423623995053	3.61407867494824	0.962081128747795	0.472547597169157	1	0	tttgtgtttcctacagaaacCacatactgtgtcatacctcc	5	12	1	1	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	SLC28A3-94	NM_001199633	exon4	c.G274A	p.G92S	AGAAACCACATAC	.	89	32	106	0	.	0	0	0	0	0	T	86920229	C	T	86920229	3	4	25	1	0	0	0	0	1	0	0	0	14568	594	21	3	1861	3	SLC28A3	9	86920229	Missense_Mutation	SNP	C	TCGA-OR-A5JY-01A-31D-A29I-10	51167577	86920229	54293202	71	4145										
ASPN	54829	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr9	95233050	95233050	+	Silent	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0902777777777778	13	0.264036200841392	1.75423623995053	3.61407867494824	0.962081128747795	0.472547597169157	1	0	tcaaatggaatgttggttggGactgaggtcaaaccttagaa	12	5	2	2	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	ASPN-514	NM_001193335	exon3	c.C288A	p.V96V	GGTTGGGACTGAG	.	98	36	85	0	.	8	8	0	0	0	T	95233050	G	T	95233050	2	4	25	1	0	0	0	0	0	0	0	1	1058	1161	41	3		3	ASPN	9	95233050	Silent	SNP	G	TCGA-OR-A5JY-01A-31D-A29I-10	8312821	95233050	45980381	72	4146										
KIAA0368	23392	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	114246951	114246951	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0902777777777778	13	0.264036200841392	1.75423623995053	3.61407867494824	0.962081128747795	0.472547597169157	1	0	tgttcagataccctatgttcTtttcggtaactagagtgatt	8	7	2	3	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	KIAA0368-68	NM_001080398	exon1	c.A75G	p.K25K	ATGTTCTTTTCGG	.	64	12	123	0	.	0	0	0	0	0	C	114246951	T	C	114246951	2	2	25	1	0	0	0	0	0	0	0	1	8192	1606	56	4		4	KIAA0368	9	114246951	Silent	SNP	T	TCGA-OR-A5JY-01A-31D-A29I-10	19013901	114246951	26966480	73	4147										
RNF183	138065	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	116060043	116060043	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0902777777777778	13	0.264036200841392	1.75423623995053	3.61407867494824	0.962081128747795	0.472547597169157	1	0	ggctggggatgaggatgggcGtagacacggtggcagaggcc	21	7	0	3	rs146147048		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	RNF183-90	NM_145051	exon2	c.C422T	p.T141M	ATGGGCGTAGACA	.	171	33	210	0	G|0.999;A|0.000	0	0	0	0	0	A	116060043	G	A	116060043	3	1	25	1	0	0	0	0	1	0	0	0	13502	1145	40	1	160	1	RNF183	9	116060043	Missense_Mutation	SNP	G	TCGA-OR-A5JY-01A-31D-A29I-10	1813092	116060043	25153388	74	4148										
CACNA1B	774	broad.mit.edu	37	chr9	140953592	140953592	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.0902777777777778	13	0.264036200841392	1.75423623995053	3.61407867494824	0.962081128747795	0.472547597169157	1	0	cctgaacatcgtgttcacatCcatgttctccatggaatgcg	8	12	2	1	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	CACNA1B-138	NM_001243812	exon30	c.C4535G	p.S1512C	TCACATCCATGTT	.	303	7	426	0	.	0	0	0	0	0	G	140953592	C	G	140953592	3	3	25	1	0	0	0	0	1	0	0	0	2545	855	30	3	4653	3	CACNA1B	9	140953592	Missense_Mutation	SNP	C	TCGA-OR-A5JY-01A-31D-A29I-10	24893549	140953592	259839	75	4149										
TAF5	6877	hgsc.bcm.edu	37	chr10	105128134	105128134	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0902777777777778	13	0.264036200841392	1.75423623995053	3.61407867494824	0.962081128747795	0.472547597169157	1	0	tggaggaggcagtggcgggcTccggagccccgggagaggtg	22	9	0	1	rs10883859	byfrequency	TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	TAF5-92	NM_006951	exon1	c.T388G	p.S130A	GCGGGCTCCGGAG	.	8	4	2	0	T|0.623;G|0.377	0	0	0	0	0	G	105128134	T	G	105128134	3	3	25	1	0	0	0	0	1	0	0	0	15565	1551	54	5	390	5	TAF5	10	105128134	Missense_Mutation	SNP	T	TCGA-OR-A5JY-01A-31D-A29I-10		105128134	30406613	76	4150										
OR51B2	79345	bcgsc.ca	37	chr11	5344681	5344681	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0902777777777778	13	0.264036200841392	1.75423623995053	3.61407867494824	0.962081128747795	0.472547597169157	1	0	gatgacagggttcattaaagGaggaaagaggaagtagatgt	15	2	1	3	rs11036815	byfrequency	TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	OR51B2-71	NM_033180	exon1	c.C847T	p.P283S	TTAAAGGAGGAAA	.	136	8	289	1	G|0.719;A|0.281	0	0	0	0	0	A	5344681	G	A	5344681	3	1	25	1	0	0	0	0	1	0	0	0	11118	1174	41	3	95	3	OR51B2	11	5344681	Missense_Mutation	SNP	G	TCGA-OR-A5JY-01A-31D-A29I-10		5344681	129661835	77	4151										
CCDC88B	283234	hgsc.bcm.edu	37	chr11	64116890	64116890	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0902777777777778	13	0.264036200841392	1.75423623995053	3.61407867494824	0.962081128747795	0.472547597169157	1	0	tggagcaggcggctctcgagCgccaggaatttctgcgagaa	15	10	2	1	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	CCDC88B-94	NM_032251	exon15	c.C2704A	p.R902S	CTCGAGCGCCAGG	.	72	4	60	0	.	4	4	0	0	0	A	64116890	C	A	64116890	3	1	25	1	0	0	0	0	1	0	0	0	2870	768	27	2	2762	2	CCDC88B	11	64116890	Missense_Mutation	SNP	C	TCGA-OR-A5JY-01A-31D-A29I-10	58772209	64116890	70889626	78	4152										
CST6	1474	hgsc.bcm.edu	37	chr11	65779590	65779590	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0902777777777778	13	0.264036200841392	1.75423623995053	3.61407867494824	0.962081128747795	0.472547597169157	1	0	ctcctggcgctgccacgcgaCgcccgggcccggccgcagga	15	19	0	0	rs1131544		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	CST6-523	NM_001323	exon1	c.C75T	p.D25D	ACGCGACGCCCGG	.	7	5	0	0	C|0.921;T|0.079	0	0	0	0	0	T	65779590	C	T	65779590	2	4	25	1	0	0	0	0	0	0	0	1	3982	535	19	1		1	CST6	11	65779590	Silent	SNP	C	TCGA-OR-A5JY-01A-31D-A29I-10	1662700	65779590	69226926	79	4153										
ADRBK1	156	broad.mit.edu;ucsc.edu	37	chr11	67046987	67046987	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0902777777777778	13	0.264036200841392	1.75423623995053	3.61407867494824	0.962081128747795	0.472547597169157	1	0	aaggagctgctggcctgctcGcatgtgagtgtcctcagctg	14	11	1	1	rs112675049	bycluster;byfrequency	TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	ADRBK1-521	NM_001619	exon4	c.G363A	p.S121S	CTGCTCGCATGTG	.	84	9	81	1	G|1.000;A|0.000	0	0	0	0	0	A	67046987	G	A	67046987	2	1	25	1	0	0	0	0	0	0	0	1	343	1074	38	1		1	ADRBK1	11	67046987	Silent	SNP	G	TCGA-OR-A5JY-01A-31D-A29I-10	1267397	67046987	67959529	80	4154										
FGF19	9965	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr11	69514323	69514323	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0902777777777778	13	0.264036200841392	1.75423623995053	3.61407867494824	0.962081128747795	0.472547597169157	1	0	gatctcctcctcgaaagcacAgtcttcctccgagtactgaa	7	14	2	1	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	FGF19-658	NM_005117	exon3	c.T358G	p.C120G	AAGCACAGTCTTC	.	114	11	103	0	.	0	0	0	0	0	C	69514323	A	C	69514323	3	2	25	1	0	0	0	0	1	0	0	0	5866	188	7	5	296	5	FGF19	11	69514323	Missense_Mutation	SNP	A	TCGA-OR-A5JY-01A-31D-A29I-10	2467336	69514323	65492193	81	4155										
ARHGEF17	9828	hgsc.bcm.edu	37	chr11	73020058	73020058	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0902777777777778	13	0.264036200841392	1.75423623995053	3.61407867494824	0.962081128747795	0.472547597169157	1	0	gcgcgaggagcctggcccagCgtcaccgagatgcgcaagct	15	14	1	1	rs12272360	byfrequency	TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	ARHGEF17-227	NM_014786	exon1	c.C375T	p.S125S	GCCCAGCGTCACC	.	5	5	2	0	C|0.906;T|0.094	1	0	1	0	0	T	73020058	C	T	73020058	2	4	25	1	0	0	0	0	0	0	0	1	900	767	27	1		1	ARHGEF17	11	73020058	Silent	SNP	C	TCGA-OR-A5JY-01A-31D-A29I-10	3505735	73020058	61986458	82	4156										
DLG2	1740	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	84245704	84245704	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0902777777777778	13	0.264036200841392	1.75423623995053	3.61407867494824	0.962081128747795	0.472547597169157	1	0	atacatgcacgagttctgggCctcttacttcgtgggttagt	11	9	2	0	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	DLG2-96	NM_001142699	exon7	c.G428T	p.G143V	TCTGGGCCTCTTA	.	210	38	192	0	.	0	0	0	0	0	A	84245704	C	A	84245704	3	1	25	1	0	0	0	0	1	0	0	0	4566	739	26	3	2746	3	DLG2	11	84245704	Missense_Mutation	SNP	C	TCGA-OR-A5JY-01A-31D-A29I-10	11225646	84245704	50760812	83	4157										
MLL	4297	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	118368752	118368752	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0902777777777778	13	0.264036200841392	1.75423623995053	3.61407867494824	0.962081128747795	0.472547597169157	1	0	gatgatgacggatcactaaaGaatgtgcatatggctgtgat	12	5	1	4	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	MLL-1255	NM_001197104	exon21	c.G5766C	p.K1922N	ACTAAAGAATGTG	.	162	33	153	0	.	1	1	0	0	0	C	118368752	G	C	118368752	3	2	25	1	0	0	0	0	1	0	0	0	9648	933	33	3	5839	3	MLL	11	118368752	Missense_Mutation	SNP	G	TCGA-OR-A5JY-01A-31D-A29I-10	34123048	118368752	16637764	84	4158										
PLEKHG6	55200	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	6426579	6426579	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0902777777777778	13	0.264036200841392	1.75423623995053	3.61407867494824	0.962081128747795	0.472547597169157	1	0	ctcttccatgccttcgtgcaGgtgggagaaggggtgctggg	17	9	1	1	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	PLEKHG6-295	NM_001144856	exon8	c.G867A	p.Q289Q	CGTGCAGGTGGGA	.	118	30	104	1	.	0	0	0	0	0	A	6426579	G	A	6426579	2	1	25	1	0	0	0	0	0	0	0	1	12103	1014	35	3		3	PLEKHG6	12	6426579	Silent	SNP	G	TCGA-OR-A5JY-01A-31D-A29I-10		6426579	127425316	85	4159			2	19		5	5	568	G		1.990825e-12
PLEKHG6	55200	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	6426809	6426809	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0902777777777778	13	0.264036200841392	1.75423623995053	3.61407867494824	0.962081128747795	0.472547597169157	1	0	agtacccactgctgctccatGctgtgctcaagaggagcccc	10	15	1	1	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	PLEKHG6-295	NM_001144856	exon9	c.G964A	p.A322T	CTCCATGCTGTGC	.	94	19	61	0	.	0	0	0	0	0	A	6426809	G	A	6426809	3	1	25	1	0	0	0	0	1	0	0	0	12103	1319	46	3	1040	3	PLEKHG6	12	6426809	Missense_Mutation	SNP	G	TCGA-OR-A5JY-01A-31D-A29I-10	230	6426809	127425086	86	4160			2	19		5	5	568	G		1.990825e-12
PLEKHG6	55200	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	6427086	6427086	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0902777777777778	13	0.264036200841392	1.75423623995053	3.61407867494824	0.962081128747795	0.472547597169157	1	0	tccgccagggcgaagagcaaGagagcttggcggctgcagca	16	11	0	2	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	PLEKHG6-295	NM_001144856	exon10	c.G1081A	p.E361K	GAGCAAGAGAGCT	.	358	85	269	2	.	0	0	0	0	0	A	6427086	G	A	6427086	3	1	25	1	0	0	0	0	1	0	0	0	12103	943	33	3	1161	3	PLEKHG6	12	6427086	Missense_Mutation	SNP	G	TCGA-OR-A5JY-01A-31D-A29I-10	277	6427086	127424809	87	4161			2	19		5	5	568	G		1.990825e-12
PLEKHG6	55200	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	6427101	6427101	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0902777777777778	13	0.264036200841392	1.75423623995053	3.61407867494824	0.962081128747795	0.472547597169157	1	0	agcaagagagcttggcggctGcagcacaacgcatcgggccc	14	13	0	1	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	PLEKHG6-295	NM_001144856	exon10	c.G1096A	p.A366T	GCGGCTGCAGCAC	.	343	84	279	2	.	0	0	0	0	0	A	6427101	G	A	6427101	3	1	25	1	0	0	0	0	1	0	0	0	12103	1319	46	3	1176	3	PLEKHG6	12	6427101	Missense_Mutation	SNP	G	TCGA-OR-A5JY-01A-31D-A29I-10	15	6427101	127424794	88	4162			2	19		5	5	568	G		1.990825e-12
PLEKHG6	55200	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	6427146	6427146	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0902777777777778	13	0.264036200841392	1.75423623995053	3.61407867494824	0.962081128747795	0.472547597169157	1	0	aggtgctggagccacccagtGatgaggtggagaaggtgaga	18	6	0	4	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	PLEKHG6-295	NM_001144856	exon10	c.G1141A	p.D381N	CCCAGTGATGAGG	.	283	68	266	1	.	0	0	0	0	0	A	6427146	G	A	6427146	3	1	25	1	0	0	0	0	1	0	0	0	12103	1290	45	3	1221	3	PLEKHG6	12	6427146	Missense_Mutation	SNP	G	TCGA-OR-A5JY-01A-31D-A29I-10	45	6427146	127424749	89	4163			2	19		5	5	568	G		1.990825e-12
SCNN1A	6337	ucsc.edu;bcgsc.ca	37	chr12	6464989	6464989	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0902777777777778	13	0.264036200841392	1.75423623995053	3.61407867494824	0.962081128747795	0.472547597169157	1	0	atccagaggttggagttgttCttgtcattgaaagtatagca	11	5	2	2	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	SCNN1A-90	NM_001159576	exon4	c.G1110C	p.K370N	GTTGTTCTTGTCA	.	417	125	308	2	.	10	9	1	0	0	G	6464989	C	G	6464989	3	3	25	1	0	0	0	0	1	0	0	0	13962	912	32	3	1112	3	SCNN1A	12	6464989	Missense_Mutation	SNP	C	TCGA-OR-A5JY-01A-31D-A29I-10	37843	6464989	127386906	90	4164										
SSPN	8082	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	26377283	26377283	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0902777777777778	13	0.264036200841392	1.75423623995053	3.61407867494824	0.962081128747795	0.472547597169157	1	0	gtgtctcatatcaggttgacGaacggacatgtattcaattt	9	7	3	1	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	SSPN-90	NM_005086	exon2	c.G337A	p.E113K	GTTGACGAACGGA	.	350	62	196	1	.	5	2	3	0	0	A	26377283	G	A	26377283	3	1	25	1	0	0	0	0	1	0	0	0	15225	1059	37	1	343	1	SSPN	12	26377283	Missense_Mutation	SNP	G	TCGA-OR-A5JY-01A-31D-A29I-10	19912294	26377283	107474612	91	4165										
APOF	319	broad.mit.edu	37	chr12	56755866	56755866	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0902777777777778	13	0.264036200841392	1.75423623995053	3.61407867494824	0.962081128747795	0.472547597169157	1	0	gtgcatcaagacatttgtctGctttccatatgaagtggcat	9	8	2	2	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	.	NM_001638	exon2	c.C124G	p.Q42E	TTGTCTGCTTTCC	.	553	13	220	0	.	0	0	0	0	0	C	56755866	G	C	56755866	3	2	25	1	0	0	0	0	1	0	0	0	803	1328	46	3	860	3	APOF	12	56755866	Missense_Mutation	SNP	G	TCGA-OR-A5JY-01A-31D-A29I-10	30378583	56755866	77096029	92	4166										
SLC5A8	160728	broad.mit.edu	37	chr12	101584302	101584302	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0902777777777778	13	0.264036200841392	1.75423623995053	3.61407867494824	0.962081128747795	0.472547597169157	1	0	ctctgcacctgggattggttGacaccgtagatgctggtcca	12	11	1	2	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	SLC5A8-90	NM_145913	exon6	c.C777T	p.V259V	TTGGTTGACACCG	.	209	6	184	0	.	0	0	0	0	0	A	101584302	G	A	101584302	2	1	25	1	0	0	0	0	0	0	0	1	14706	1277	45	3		3	SLC5A8	12	101584302	Silent	SNP	G	TCGA-OR-A5JY-01A-31D-A29I-10	44828436	101584302	32267593	93	4167										
CHPT1	56994	broad.mit.edu	37	chr12	102091784	102091784	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0902777777777778	13	0.264036200841392	1.75423623995053	3.61407867494824	0.962081128747795	0.472547597169157	1	0	tcgagccgccgctgcagctcTactggacctggctgctccag	12	16	1	0	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	CHPT1-90	NM_020244	exon1	c.T145G	p.Y49D	CAGCTCTACTGGA	.	17	4	24	0	.	34	23	11	0	0	G	102091784	T	G	102091784	3	3	25	1	0	0	0	0	1	0	0	0	3376	1522	53	5	147	5	CHPT1	12	102091784	Missense_Mutation	SNP	T	TCGA-OR-A5JY-01A-31D-A29I-10	507482	102091784	31760111	94	4168										
CORO1C	23603	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr12	109055859	109055862	+	Frame_Shift_Del	DEL	TCTT	TCTT	-													0.0902777777777778	13	0.264036200841392	1.75423623995053	3.61407867494824	0.962081128747795	0.472547597169157	1	0	ccaagccacgatgccgactcTctttgagtggccttccaaaa					novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	TCTT	TCTT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	CORO1C-228	NM_014325	exon4	c.391_394del	p.131_132del	CGACTCTCTTTGA	.	155	32	183	0	.	0	0	0	0	0	-	109055862	TCTT	-	109055859	7	5	25	1	0	1	0	1	0	0	0	0	3761	1559	54	0	1062	0	CORO1C	12	109055859	Frame_Shift_Del	DEL	TCTT	TCGA-OR-A5JY-01A-31D-A29I-10	6964075	109055859	24796036	95	4169										
C12orf65	91574	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	123741386	123741386	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0902777777777778	13	0.264036200841392	1.75423623995053	3.61407867494824	0.962081128747795	0.472547597169157	1	0	cagacaagatcagttgatcaGaacagaaagctagctcggaa	10	8	2	5	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	C12orf65-90	NM_001194995	exon3	c.G309T	p.Q103H	TGATCAGAACAGA	.	206	30	134	0	.	44	35	9	0	0	T	123741386	G	T	123741386	3	4	25	1	0	0	0	0	1	0	0	0	1712	933	33	3	315	3	C12orf65	12	123741386	Missense_Mutation	SNP	G	TCGA-OR-A5JY-01A-31D-A29I-10	14685527	123741386	10110509	96	4170										
EFHA1	221154	hgsc.bcm.edu	37	chr13	22178258	22178258	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0902777777777778	13	0.264036200841392	1.75423623995053	3.61407867494824	0.962081128747795	0.472547597169157	1	0	tttccgccccaggccgccacCcgcgcgcagctacccgcagc	10	22	0	0	rs9509812	byfrequency	TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	EFHA1-90	NM_152726	exon1	c.G30A	p.R10R	CGCCACCCGCGCG	.	12	6	0	0	C|0.873;T|0.127	21	2	19	0	0	T	22178258	C	T	22178258	2	4	25	1	0	0	0	0	0	0	0	1	4954	610	22	3		3	EFHA1	13	22178258	Silent	SNP	C	TCGA-OR-A5JY-01A-31D-A29I-10		22178258	92991620	97	4171										
ATP7B	540	bcgsc.ca	37	chr13	52544805	52544805	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0902777777777778	13	0.264036200841392	1.75423623995053	3.61407867494824	0.962081128747795	0.472547597169157	1	0	gtggggagccacttcctgcaCagatgtaggtgtaccatctg	13	10	1	1	rs1801244	byfrequency	TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	ATP7B-92	NM_000053	exon3	c.G1366C	p.V456L	CCTGCACAGATGT	.	102	7	117	0	C|0.518;G|0.482	0	0	0	0	0	G	52544805	C	G	52544805	3	3	25	1	0	0	0	0	1	0	0	0	1192	478	17	3	3107	3	ATP7B	13	52544805	Missense_Mutation	SNP	C	TCGA-OR-A5JY-01A-31D-A29I-10	30366547	52544805	62625073	98	4172										
DYNC1H1	1778	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	102463457	102463457	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0902777777777778	13	0.264036200841392	1.75423623995053	3.61407867494824	0.962081128747795	0.472547597169157	1	0	tattgacaacatcgagggagAgtggggagccttcaatgaca	13	7	1	3	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	DYNC1H1-98	NM_001376	exon16	c.A3650T	p.E1217V	AGGGAGAGTGGGG	.	214	55	280	2	.	10	10	0	0	0	T	102463457	A	T	102463457	3	4	25	1	0	0	0	0	1	0	0	0	4852	304	11	5	3712	5	DYNC1H1	14	102463457	Missense_Mutation	SNP	A	TCGA-OR-A5JY-01A-31D-A29I-10		102463457	4886083	99	4173										
KIF26A	26153	hgsc.bcm.edu	37	chr14	104644099	104644099	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0902777777777778	13	0.264036200841392	1.75423623995053	3.61407867494824	0.962081128747795	0.472547597169157	1	0	caccacagcggtggcagcagTggctatgagagcctgcggcg	16	12	0	1	rs2497297	byfrequency	TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	KIF26A-24	NM_015656	exon12	c.T4974C	p.S1658S	CAGCAGTGGCTAT	.	13	13	0	0	T|0.603;C|0.397	0	0	0	0	0	C	104644099	T	C	104644099	2	2	25	1	0	0	0	0	0	0	0	1	8315	1693	59	4		4	KIF26A	14	104644099	Silent	SNP	T	TCGA-OR-A5JY-01A-31D-A29I-10	2180642	104644099	2705441	100	4174										
AHNAK2	113146	hgsc.bcm.edu;broad.mit.edu	37	chr14	105416541	105416541	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0902777777777778	13	0.264036200841392	1.75423623995053	3.61407867494824	0.962081128747795	0.472547597169157	1	0	agggccactttgggcatcttCaaactgggcatctgcacctt	10	12	3	0	rs201377031	alternate_allele	TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	AHNAK2-47	NM_138420	exon7	c.G5247T	p.L1749F	CATCTTCAAACTG	.	113	6	82	0	.	0	0	0	0	0	A	105416541	C	A	105416541	3	1	25	1	0	0	0	0	1	0	0	0	415	825	29	3	12144	3	AHNAK2	14	105416541	Missense_Mutation	SNP	C	TCGA-OR-A5JY-01A-31D-A29I-10	772442	105416541	1932999	101	4175										
CHRFAM7A	89832	broad.mit.edu;bcgsc.ca	37	chr15	30659708	30659708	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0902777777777778	13	0.264036200841392	1.75423623995053	3.61407867494824	0.962081128747795	0.472547597169157	1	0	accgagaggcccacgatgatCatggtgctggcgaagtactg	14	10	1	2	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	CHRFAM7A-45	NM_139320	exon9	c.G633C	p.M211I	GATGATCATGGTG	.	2136	79	1656	0	.	4	4	0	0	0	G	30659708	C	G	30659708	3	3	25	1	0	0	0	0	1	0	0	0	3381	826	29	3	613	3	CHRFAM7A	15	30659708	Missense_Mutation	SNP	C	TCGA-OR-A5JY-01A-31D-A29I-10		30659708	71871684	102	4176										
KBTBD13	390594	hgsc.bcm.edu	37	chr15	65369947	65369947	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0902777777777778	13	0.264036200841392	1.75423623995053	3.61407867494824	0.962081128747795	0.472547597169157	1	0	ccgcctctacgccatcggcgGcgaattccagaggacgccca	11	17	1	1	rs146917406		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	.	NM_001101362	exon1	c.G794A	p.G265D	TCGGCGGCGAATT	.	27	11	2	0	G|0.992;A|0.008	0	0	0	0	0	A	65369947	G	A	65369947	3	1	25	1	0	0	0	0	1	0	0	0	8013	1203	42	3	796	3	KBTBD13	15	65369947	Missense_Mutation	SNP	G	TCGA-OR-A5JY-01A-31D-A29I-10	34710239	65369947	37161445	103	4177										
GOLGA6D	653643	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr15	75586797	75586797	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0902777777777778	13	0.264036200841392	1.75423623995053	3.61407867494824	0.962081128747795	0.472547597169157	1	0	gcagatcgtgcagctgtctcCtgtcatgcaggacacctagg	12	12	2	1	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	.	NM_001145224	exon18	c.C2063A	p.P688H	TGTCTCCTGTCAT	.	327	58	206	0	.	0	0	0	0	0	A	75586797	C	A	75586797	3	1	25	1	0	0	0	0	1	0	0	0	6580	681	24	3	2133	3	GOLGA6D	15	75586797	Missense_Mutation	SNP	C	TCGA-OR-A5JY-01A-31D-A29I-10	10216850	75586797	26944595	104	4178										
RHBDF1	64285	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr16	108431	108431	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0902777777777778	13	0.264036200841392	1.75423623995053	3.61407867494824	0.962081128747795	0.472547597169157	1	0	acaccactcacagcggacagGatagacgtagaagaggacca	11	11	1	3	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	RHBDF1-92	NM_022450	exon18	c.C2476T	p.P826S	GGACAGGATAGAC	.	154	36	289	1	.	36	22	14	0	0	A	108431	G	A	108431	3	1	25	1	0	0	0	0	1	0	0	0	13354	1174	41	3	95	3	RHBDF1	16	108431	Missense_Mutation	SNP	G	TCGA-OR-A5JY-01A-31D-A29I-10		108431	90246322	105	4179										
MEFV	4210	hgsc.bcm.edu	37	chr16	3304573	3304573	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0902777777777778	13	0.264036200841392	1.75423623995053	3.61407867494824	0.962081128747795	0.472547597169157	1	0	tgcgcgtccaggccctccgaGgccttctctctgcgtttgct	11	16	2	0	rs224223	byfrequency	TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	MEFV-228	NM_000243	exon2	c.C495A	p.A165A	CTCCGAGGCCTTC	.	7	7	0	0	G|0.570;T|0.430	0	0	0	0	0	T	3304573	G	T	3304573	2	4	25	1	0	0	0	0	0	0	0	1	9487	987	35	3		3	MEFV	16	3304573	Silent	SNP	G	TCGA-OR-A5JY-01A-31D-A29I-10	3196142	3304573	87050180	106	4180										
ERI2	112479	broad.mit.edu	37	chr16	20810067	20810067	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0902777777777778	13	0.264036200841392	1.75423623995053	3.61407867494824	0.962081128747795	0.472547597169157	1	0	tttttccttgcttttgcataTagataggtgaattcaaggta	8	5	1	2	rs3213646	byfrequency	TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	ERI2-153	NM_001142725	exon9	c.A1055G	p.Y352C	TGCATATAGATAG	.	76	3	77	0	T|0.674;C|0.326	4	4	0	0	0	C	20810067	T	C	20810067	3	2	25	1	0	0	0	0	1	0	0	0	5241	1406	49	4	1291	4	ERI2	16	20810067	Missense_Mutation	SNP	T	TCGA-OR-A5JY-01A-31D-A29I-10	17505494	20810067	69544686	107	4181										
ABCC11	85320	broad.mit.edu;bcgsc.ca	37	chr16	48209224	48209224	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0902777777777778	13	0.264036200841392	1.75423623995053	3.61407867494824	0.962081128747795	0.472547597169157	1	0	gatcactgagagcttggaccGcaagtcctccaggccgatgc	12	13	1	1	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	ABCC11-95	NM_033151	exon25	c.C3643T	p.R1215W	TGGACCGCAAGTC	.	169	7	250	0	.	0	0	0	0	0	A	48209224	G	A	48209224	3	1	25	1	0	0	0	0	1	0	0	0	51	1086	38	1	525	1	ABCC11	16	48209224	Missense_Mutation	SNP	G	TCGA-OR-A5JY-01A-31D-A29I-10	27399157	48209224	42145529	108	4182										
CNOT1	23019	bcgsc.ca	37	chr16	58575489	58575489	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0902777777777778	13	0.264036200841392	1.75423623995053	3.61407867494824	0.962081128747795	0.472547597169157	1	0	acattgcgtgcaaactcttcGtaaacagccaactgctttgg	8	11	1	0	rs11540994	byfrequency	TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	CNOT1-95	NM_016284	exon34	c.C4716T	p.Y1572Y	CTCTTCGTAAACA	.	135	6	196	0	G|0.583;A|0.417	43	43	0	0	0	A	58575489	G	A	58575489	2	1	25	1	0	0	0	0	0	0	0	1	3623	1140	40	1		1	CNOT1	16	58575489	Silent	SNP	G	TCGA-OR-A5JY-01A-31D-A29I-10	10366265	58575489	31779264	109	4183										
CALB2	794	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr16	71416647	71416647	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0902777777777778	13	0.264036200841392	1.75423623995053	3.61407867494824	0.962081128747795	0.472547597169157	1	0	gcggaagtacgacacagacaGgagtggctacatcgaagcca	13	10	0	1	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	CALB2-90	NM_007088	exon5	c.G368C	p.R123T	CAGACAGGAGTGG	.	216	81	318	0	.	0	0	0	0	0	C	71416647	G	C	71416647	3	2	25	1	0	0	0	0	1	0	0	0	2580	1000	35	3	386	3	CALB2	16	71416647	Missense_Mutation	SNP	G	TCGA-OR-A5JY-01A-31D-A29I-10	12841158	71416647	18938106	110	4184										
ZFPM1	161882	hgsc.bcm.edu	37	chr16	88599659	88599659	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0902777777777778	13	0.264036200841392	1.75423623995053	3.61407867494824	0.962081128747795	0.472547597169157	1	0	tcgccaggactggacagaaaGgccctggccgaggccaccaa	13	14	0	1	rs71395304	byfrequency	TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	ZFPM1-90	NM_153813	exon10	c.G1293T	p.K431N	CAGAAAGGCCCTG	.	19	4	2	0	G|0.858;T|0.142	3	3	0	0	0	T	88599659	G	T	88599659	3	4	25	1	0	0	0	0	1	0	0	0	17694	991	35	3	1331	3	ZFPM1	16	88599659	Missense_Mutation	SNP	G	TCGA-OR-A5JY-01A-31D-A29I-10	17183012	88599659	1755094	111	4185										
ABR	29	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	970425	970425	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0902777777777778	13	0.264036200841392	1.75423623995053	3.61407867494824	0.962081128747795	0.472547597169157	1	0	gcctcagactcctcgggggaTggaaacaccaggtcggccag	14	13	1	1	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	ABR-91	NM_021962	exon10	c.A1074G	p.P358P	GGGGGATGGAAAC	.	19	8	47	0	.	0	0	0	0	0	C	970425	T	C	970425	2	2	25	1	0	0	0	0	0	0	0	1	99	1451	51	4		4	ABR	17	970425	Silent	SNP	T	TCGA-OR-A5JY-01A-31D-A29I-10		970425	80224785	112	4186										
ARRB2	409	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	4619770	4619770	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0902777777777778	13	0.264036200841392	1.75423623995053	3.61407867494824	0.962081128747795	0.472547597169157	1	0	cctggatgtgctgggcttgtCcttccgcaaagacctgttca	11	12	1	1	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	ARRB2-522	NM_001257329	exon5	c.C224T	p.S75F	GCTTGTCCTTCCG	.	81	38	99	0	.	7	7	0	0	0	T	4619770	C	T	4619770	3	4	25	1	0	0	0	0	1	0	0	0	982	855	30	3	242	3	ARRB2	17	4619770	Missense_Mutation	SNP	C	TCGA-OR-A5JY-01A-31D-A29I-10	3649345	4619770	76575440	113	4187										
SLC13A5	284111	bcgsc.ca	37	chr17	6594223	6594223	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0902777777777778	13	0.264036200841392	1.75423623995053	3.61407867494824	0.962081128747795	0.472547597169157	1	0	gggcactgcgtgcaagggctCcatctgcttccccatccaca	10	16	1	0	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	SLC13A5-90	NM_001143838	exon10	c.G1312A	p.E438K	AGGGCTCCATCTG	.	100	29	139	0	.	0	0	0	0	0	T	6594223	C	T	6594223	3	4	25	1	0	0	0	0	1	0	0	0	14430	864	30	3	406	3	SLC13A5	17	6594223	Missense_Mutation	SNP	C	TCGA-OR-A5JY-01A-31D-A29I-10	1974453	6594223	74600987	114	4188										
UTP18	51096	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	49354664	49354664	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0902777777777778	13	0.264036200841392	1.75423623995053	3.61407867494824	0.962081128747795	0.472547597169157	1	0	attcctgtgcatcaagtgagAggtaagatttctgttgaatg	11	5	2	3	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	UTP18-90	NM_016001	exon7	c.A1011T	p.R337S	AGTGAGAGGTAAG	.	81	16	75	0	.	3	0	3	0	0	T	49354664	A	T	49354664	3	4	25	1	0	0	0	0	1	0	0	0	17136	318	11	5	1037	5	UTP18	17	49354664	Missense_Mutation	SNP	A	TCGA-OR-A5JY-01A-31D-A29I-10	42760441	49354664	31840546	115	4189										
TRIM37	4591	broad.mit.edu	37	chr17	57139965	57139965	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0902777777777778	13	0.264036200841392	1.75423623995053	3.61407867494824	0.962081128747795	0.472547597169157	1	0	tccagcaaagtcctgaaactTgaagaggtggactgtaaaca	10	8	0	3	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	TRIM37-660	NM_015294	exon11	c.A905G	p.Q302R	GAAACTTGAAGAG	.	121	3	114	0	.	14	14	0	0	0	C	57139965	T	C	57139965	3	2	25	1	0	0	0	0	1	0	0	0	16549	1812	63	4	2053	4	TRIM37	17	57139965	Missense_Mutation	SNP	T	TCGA-OR-A5JY-01A-31D-A29I-10	7785301	57139965	24055245	116	4190										
PRKAR1A	5573	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	66519041	66519041	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0902777777777778	13	0.264036200841392	1.75423623995053	3.61407867494824	0.962081128747795	0.472547597169157	1	0	gcgctgaggtctacacggagGaagatgcggcatcctatgtt	14	9	1	2	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	PRKAR1A-1141	NM_001276290	exon2	c.G322T	p.E108X	ACGGAGGAAGATG	.	58	36	72	0	.	62	59	3	0	0	T	66519041	G	T	66519041	4	4	25	1	0	0	0	0	0	1	0	0	12535	1175	41	3	328	3	PRKAR1A	17	66519041	Nonsense_Mutation	SNP	G	TCGA-OR-A5JY-01A-31D-A29I-10	9379076	66519041	14676169	117	4191										
DSC2	1824	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr18	28672247	28672247	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0902777777777778	13	0.264036200841392	1.75423623995053	3.61407867494824	0.962081128747795	0.472547597169157	1	0	attagatttgcagctgtaaaGcactctttcaggttaactgt	8	7	2	1	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	DSC2-517	NM_024422	exon3	c.C171A	p.C57X	TGTAAAGCACTCT	.	136	61	122	0	.	0	0	0	0	0	T	28672247	G	T	28672247	4	4	25	1	0	0	0	0	0	1	0	0	4777	963	34	3	2630	3	DSC2	18	28672247	Nonsense_Mutation	SNP	G	TCGA-OR-A5JY-01A-31D-A29I-10		28672247	49405001	118	4192										
DOHH	83475	hgsc.bcm.edu	37	chr19	3492318	3492318	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0902777777777778	13	0.264036200841392	1.75423623995053	3.61407867494824	0.962081128747795	0.472547597169157	1	0	ttgcgcagggcgaacatggcGcggtatcgctcgaagagcgg	17	10	0	1	rs78287632	byfrequency	TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	DOHH-90	NM_001145165	exon4	c.C531G	p.R177R	CATGGCGCGGTAT	.	11	5	0	0	G|0.979;C|0.021	17	7	10	0	0	C	3492318	G	C	3492318	2	2	25	1	0	0	0	0	0	0	0	1	4706	1074	38	2		2	DOHH	19	3492318	Silent	SNP	G	TCGA-OR-A5JY-01A-31D-A29I-10		3492318	55636665	119	4193										
CREB3L3	84699	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	4171861	4171861	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0902777777777778	13	0.264036200841392	1.75423623995053	3.61407867494824	0.962081128747795	0.472547597169157	1	0	gccaccctggtcctgaggaaTgcaacagaggggctgggcca	15	12	0	2	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	CREB3L3-92	NM_032607	exon10	c.T1281A	p.N427K	GAGGAATGCAACA	.	187	26	144	1	.	0	0	0	0	0	A	4171861	T	A	4171861	3	1	25	1	0	0	0	0	1	0	0	0	3864	1461	51	5	1319	5	CREB3L3	19	4171861	Missense_Mutation	SNP	T	TCGA-OR-A5JY-01A-31D-A29I-10	679543	4171861	54957122	120	4194										
PLIN5	440503	hgsc.bcm.edu	37	chr19	4524016	4524016	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0902777777777778	13	0.264036200841392	1.75423623995053	3.61407867494824	0.962081128747795	0.472547597169157	1	0	ggcgccggcgggcaggccccGcacgctggactccagagcct	16	17	0	1	rs1062223	byfrequency	TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	PLIN5-22	NM_001013706	exon8	c.C916T	p.R306W	GGCCCCGCACGCT	.	7	4	0	0	G|0.892;A|0.108	2	0	2	0	0	A	4524016	G	A	4524016	3	1	25	1	0	0	0	0	1	0	0	0	12122	1086	38	1	479	1	PLIN5	19	4524016	Missense_Mutation	SNP	G	TCGA-OR-A5JY-01A-31D-A29I-10	352155	4524016	54604967	121	4195										
PPAN-P2RY11	692312	broad.mit.edu	37	chr19	10224474	10224474	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0902777777777778	13	0.264036200841392	1.75423623995053	3.61407867494824	0.962081128747795	0.472547597169157	1	0	ccggaagcagcgcccatggcAccccgccgtggtcttctctg	12	17	2	0	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	PPAN-P2RY11-24	NM_001198690	exon13	c.A1507C	p.T503P	CATGGCACCCCGC	.	142	15	129	8	.	17	16	1	0	0	C	10224474	A	C	10224474	3	2	25	1	0	0	0	0	1	0	0	0	12318	159	6	5		5	PPAN-P2RY11	19	10224474	Missense_Mutation	SNP	A	TCGA-OR-A5JY-01A-31D-A29I-10	5700458	10224474	48904509	122	4196										
PGLS	25796	hgsc.bcm.edu	37	chr19	17622614	17622614	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0902777777777778	13	0.264036200841392	1.75423623995053	3.61407867494824	0.962081128747795	0.472547597169157	1	0	gcgcccgtttcgcgctcggcCtgtcgggcgggagcctcgtc	16	16	0	0	rs11086075	byfrequency	TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	PGLS-90	NM_012088	exon1	c.C133T	p.L45L	CTCGGCCTGTCGG	.	12	12	0	0	C|0.617;T|0.383	28	0	28	0	0	T	17622614	C	T	17622614	2	4	25	1	0	0	0	0	0	0	0	1	11821	680	24	3		3	PGLS	19	17622614	Silent	SNP	C	TCGA-OR-A5JY-01A-31D-A29I-10	7398140	17622614	41506369	123	4197										
PRX	57716	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr19	40909675	40909676	+	Frame_Shift_Del	DEL	CC	CC	-													0.0902777777777778	13	0.264036200841392	1.75423623995053	3.61407867494824	0.962081128747795	0.472547597169157	1	0	gcagctcccgaacgaagattCcctctttgccgccgcccgct					novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	CC	CC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	PRX-92	NM_181882	exon5	c.121_122del	p.41_41del	AAGATTCCCTCTT	.	114	42	140	0	.	0	0	0	0	0	-	40909676	CC	-	40909675	7	5	25	1	0	1	0	1	0	0	0	0	12674	855	30	0	4338	0	PRX	19	40909675	Frame_Shift_Del	DEL	CC	TCGA-OR-A5JY-01A-31D-A29I-10	23287061	40909675	18219308	124	4198										
PTGIR	5739	hgsc.bcm.edu	37	chr19	47127324	47127324	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0902777777777778	13	0.264036200841392	1.75423623995053	3.61407867494824	0.962081128747795	0.472547597169157	1	0	tcggtggccgccagtccggtCaccagcaccgcgaaggccga	14	16	1	0	rs2229128	byfrequency	TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	PTGIR-522	NM_000960	exon2	c.G159C	p.V53V	TCCGGTCACCAGC	.	9	4	0	0	C|0.254;G|0.746	0	0	0	0	0	G	47127324	C	G	47127324	2	3	25	1	0	0	0	0	0	0	0	1	12784	813	29	3		3	PTGIR	19	47127324	Silent	SNP	C	TCGA-OR-A5JY-01A-31D-A29I-10	6217649	47127324	12001659	125	4199										
PLA2G4C	8605	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	48601409	48601409	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0902777777777778	13	0.264036200841392	1.75423623995053	3.61407867494824	0.962081128747795	0.472547597169157	1	0	tgcttacctggtgctcttgcCtcctgccaggaaggttgcag	12	12	1	0	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	PLA2G4C-92	NM_001159322	exon6	c.G585A	p.E195E	TCTTGCCTCCTGC	.	155	43	155	0	.	0	0	0	0	0	T	48601409	C	T	48601409	2	4	25	1	0	0	0	0	0	0	0	1	12032	680	24	3		3	PLA2G4C	19	48601409	Silent	SNP	C	TCGA-OR-A5JY-01A-31D-A29I-10	1474085	48601409	10527574	126	4200										
PRR12	57479	hgsc.bcm.edu	37	chr19	50100554	50100554	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0902777777777778	13	0.264036200841392	1.75423623995053	3.61407867494824	0.962081128747795	0.472547597169157	1	0	cccccggcccccctgcttatGatccctatgggccctactgt	8	19	0	1	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	PRR12-70	NM_020719	exon4	c.G2962C	p.D988H	GCTTATGATCCCT	.	24	6	1	0	.	9	9	0	0	0	C	50100554	G	C	50100554	3	2	25	1	0	0	0	0	1	0	0	0	12616	1290	45	3	2976	3	PRR12	19	50100554	Missense_Mutation	SNP	G	TCGA-OR-A5JY-01A-31D-A29I-10	1499145	50100554	9028429	127	4201										
PNKP	11284	broad.mit.edu	37	chr19	50370408	50370408	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0902777777777778	13	0.264036200841392	1.75423623995053	3.61407867494824	0.962081128747795	0.472547597169157	1	0	ggcaggaagatggggggcgcTcccccaggggggctctcgag	20	11	1	1	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	PNKP-253	NM_007254	exon2	c.A54G	p.G18G	GGGCGCTCCCCCA	.	75	24	34	1	.	41	39	2	0	0	C	50370408	T	C	50370408	2	2	25	1	0	0	0	0	0	0	0	1	12176	1538	54	4		4	PNKP	19	50370408	Silent	SNP	T	TCGA-OR-A5JY-01A-31D-A29I-10	269854	50370408	8758575	128	4202										
RNF24	11237	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr20	3954983	3954983	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0902777777777778	13	0.264036200841392	1.75423623995053	3.61407867494824	0.962081128747795	0.472547597169157	1	0	aagactgaatacttacccccCtaagaccgggaacaaggcag	9	12	0	3	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	RNF24-226	NM_001134338	exon2	c.G52T	p.G18W	ACCCCCCTAAGAC	.	49	10	56	0	.	0	0	0	0	0	A	3954983	C	A	3954983	3	1	25	1	0	0	0	0	1	0	0	0	13519	681	24	3	481	3	RNF24	20	3954983	Missense_Mutation	SNP	C	TCGA-OR-A5JY-01A-31D-A29I-10		3954983	59070537	129	4203										
TPX2	22974	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr20	30388862	30388862	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0902777777777778	13	0.264036200841392	1.75423623995053	3.61407867494824	0.962081128747795	0.472547597169157	1	0	gtgcctgtatctcccaaattCtccactcgattccactgcta	5	15	2	0	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	TPX2-290	NM_012112	exon18	c.C2223T	p.F741F	CAAATTCTCCACT	.	186	45	225	0	.	43	32	11	0	0	T	30388862	C	T	30388862	2	4	25	1	0	0	0	0	0	0	0	1	16470	912	32	3		3	TPX2	20	30388862	Silent	SNP	C	TCGA-OR-A5JY-01A-31D-A29I-10	26433879	30388862	32636658	130	4204										
WISP2	8839	hgsc.bcm.edu	37	chr20	43348735	43348735	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0902777777777778	13	0.264036200841392	1.75423623995053	3.61407867494824	0.962081128747795	0.472547597169157	1	0	cccggggcaggacccggtggCcggggggccctgtgcctctg	19	15	1	0	rs2296530	byfrequency	TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	WISP2-130	NM_003881	exon2	c.C258A	p.G86G	CGGTGGCCGGGGG	.	6	4	2	0	C|0.615;A|0.385	19	7	12	0	0	A	43348735	C	A	43348735	2	1	25	1	0	0	0	0	0	0	0	1	17411	726	26	3		3	WISP2	20	43348735	Silent	SNP	C	TCGA-OR-A5JY-01A-31D-A29I-10	12959873	43348735	19676785	131	4205										
PABPC1L	80336	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr20	43550237	43550237	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0902777777777778	13	0.264036200841392	1.75423623995053	3.61407867494824	0.962081128747795	0.472547597169157	1	0	ccctcctcctttccccaggcCgtggtccatatgaacgggaa	9	16	0	1	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	PABPC1L-47	NM_001124756	exon6	c.C741T	p.A247A	CCAGGCCGTGGTC	.	143	55	157	0	.	0	0	0	0	0	T	43550237	C	T	43550237	2	4	25	1	0	0	0	0	0	0	0	1	11393	639	23	1		1	PABPC1L	20	43550237	Silent	SNP	C	TCGA-OR-A5JY-01A-31D-A29I-10	201502	43550237	19475283	132	4206										
MYT1	4661	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr20	62839773	62839773	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0902777777777778	13	0.264036200841392	1.75423623995053	3.61407867494824	0.962081128747795	0.472547597169157	1	0	cctgccgagcagagccagctGggcctgggagagccagggaa	17	12	0	2	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	MYT1-704	NM_004535	exon7	c.G1224T	p.L408L	CCAGCTGGGCCTG	.	165	39	204	0	.	0	0	0	0	0	T	62839773	G	T	62839773	2	4	25	1	0	0	0	0	0	0	0	1	10134	1335	47	3		3	MYT1	20	62839773	Silent	SNP	G	TCGA-OR-A5JY-01A-31D-A29I-10	19289536	62839773	185747	133	4207										
KRTAP13-1	140258	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr21	31768658	31768658	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0902777777777778	13	0.264036200841392	1.75423623995053	3.61407867494824	0.962081128747795	0.472547597169157	1	0	ctcctgctaccgtcccagaaCctccttgctctgcagtccct	6	19	1	1	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	KRTAP13-1-91	NM_181599	exon1	c.C254A	p.T85N	CCAGAACCTCCTT	.	129	32	192	0	.	0	0	0	0	0	A	31768658	C	A	31768658	3	1	25	1	0	0	0	0	1	0	0	0	8543	507	18	3	256	3	KRTAP13-1	21	31768658	Missense_Mutation	SNP	C	TCGA-OR-A5JY-01A-31D-A29I-10		31768658	16361237	134	4208										
SON	6651	ucsc.edu	37	chr21	34923319	34923319	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0902777777777778	13	0.264036200841392	1.75423623995053	3.61407867494824	0.962081128747795	0.472547597169157	1	0	cctgtggcaactggggcactAgagttgcctgggccgctcat	14	12	1	1	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	SON-97	NM_032195	exon3	c.A1782G	p.L594L	GGCACTAGAGTTG	.	83	1	88	0	.	12	12	0	0	0	G	34923319	A	G	34923319	2	3	25	1	0	0	0	0	0	0	0	1	14961	407	15	4		4	SON	21	34923319	Silent	SNP	A	TCGA-OR-A5JY-01A-31D-A29I-10	3154661	34923319	13206576	135	4209										
DNMT3L	29947	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr21	45666395	45666395	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0902777777777778	13	0.264036200841392	1.75423623995053	3.61407867494824	0.962081128747795	0.472547597169157	1	0	cgagcttcgagctctgcttgTtctgggccagcagggacaat	13	11	2	0	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	DNMT3L-228	NM_013369	exon12	c.A1049G	p.N350S	TGCTTGTTCTGGG	.	135	35	116	0	.	0	0	0	0	0	C	45666395	T	C	45666395	3	2	25	1	0	0	0	0	1	0	0	0	4689	1725	60	4	118	4	DNMT3L	21	45666395	Missense_Mutation	SNP	T	TCGA-OR-A5JY-01A-31D-A29I-10	10743076	45666395	2463500	136	4210										
PLA2G3	50487	bcgsc.ca	37	chr22	31532960	31532960	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0902777777777778	13	0.264036200841392	1.75423623995053	3.61407867494824	0.962081128747795	0.472547597169157	1	0	gcagctggaactcgatttccCggggcccaatctggtgctca	12	13	2	0	rs2232183	byfrequency	TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	PLA2G3-226	NM_015715	exon5	c.G1133A	p.R378Q	ATTTCCCGGGGCC	.	177	6	165	1	C|0.845;T|0.155	0	0	0	0	0	T	31532960	C	T	31532960	3	4	25	1	0	0	0	0	1	0	0	0	12029	652	23	1	408	1	PLA2G3	22	31532960	Missense_Mutation	SNP	C	TCGA-OR-A5JY-01A-31D-A29I-10		31532960	19771606	137	4211										
A4GALT	53947	ucsc.edu;bcgsc.ca	37	chr22	43089055	43089055	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0902777777777778	13	0.264036200841392	1.75423623995053	3.61407867494824	0.962081128747795	0.472547597169157	1	0	agcagccgcggcagctcctcGgggttgatgtcctcaaagta	13	12	1	1	rs6002904	byfrequency	TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	A4GALT-90	NM_017436	exon3	c.C903G	p.P301P	CTCCTCGGGGTTG	.	37	4	85	0	G|0.333;C|0.667	4	4	0	0	0	C	43089055	G	C	43089055	2	2	25	1	0	0	0	0	0	0	0	1	6	1103	39	2		2	A4GALT	22	43089055	Silent	SNP	G	TCGA-OR-A5JY-01A-31D-A29I-10	11556095	43089055	8215511	138	4212										
ARFGAP3	26286	ucsc.edu;bcgsc.ca	37	chr22	43203137	43203137	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0902777777777778	13	0.264036200841392	1.75423623995053	3.61407867494824	0.962081128747795	0.472547597169157	1	0	gagcttatggaggaacttgcCgacagcctctctaggcgggc	14	11	1	0	rs738535	byfrequency	TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	ARFGAP3-153	NM_014570	exon14	c.G1353A	p.S451S	ACTTGCCGACAGC	.	55	5	114	1	C|0.641;T|0.359	70	70	0	0	0	T	43203137	C	T	43203137	2	4	25	1	0	0	0	0	0	0	0	1	851	639	23	1		1	ARFGAP3	22	43203137	Silent	SNP	C	TCGA-OR-A5JY-01A-31D-A29I-10	114082	43203137	8101429	139	4213										
LDOC1L	84247	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr22	44893294	44893294	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0902777777777778	13	0.264036200841392	1.75423623995053	3.61407867494824	0.962081128747795	0.472547597169157	1	0	tggtgagattggccttctccGcccgcagggtggaagcctcc	14	13	1	1	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	LDOC1L-69	NM_032287	exon2	c.C143T	p.A48V	TTCTCCGCCCGCA	.	35	31	85	0	.	6	0	5	1	0	A	44893294	G	A	44893294	3	1	25	1	0	0	0	0	1	0	0	0	8732	1087	38	1	580	1	LDOC1L	22	44893294	Missense_Mutation	SNP	G	TCGA-OR-A5JY-01A-31D-A29I-10	1690157	44893294	6411272	140	4214										
CSF2RA	1438	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	1413336	1413336	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0902777777777778	13	0.264036200841392	1.75423623995053	3.61407867494824	0.962081128747795	0.472547597169157	1	0	tacctggactttcagtaccaGctggacgtccacagaaaggt	10	11	1	1	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	CSF2RA-42	NM_172247	exon6	c.G762T	p.Q254H	GTACCAGCTGGAC	.	693	303	702	2	.	2	2	0	0	0	T	1413336	G	T	1413336	3	4	25	1	0	0	0	0	1	0	0	0	3940	962	34	3	784	3	CSF2RA	23	1413336	Missense_Mutation	SNP	G	TCGA-OR-A5JY-01A-31D-A29I-10		1413336	153857224	141	4215										
DDX53	168400	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	23018850	23018850	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0902777777777778	13	0.264036200841392	1.75423623995053	3.61407867494824	0.962081128747795	0.472547597169157	1	0	caacttgcaggtttaaagacGcttttcagcaataccctgat	7	10	1	2	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	DDX53-228	NM_182699	exon1	c.G676A	p.A226T	AAAGACGCTTTTC	.	340	99	234	1	.	0	0	0	0	0	A	23018850	G	A	23018850	3	1	25	1	0	0	0	0	1	0	0	0	4377	1087	38	1	678	1	DDX53	23	23018850	Missense_Mutation	SNP	G	TCGA-OR-A5JY-01A-31D-A29I-10	21605514	23018850	132251710	142	4216										
GPR173	54328	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	53106284	53106284	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0902777777777778	13	0.264036200841392	1.75423623995053	3.61407867494824	0.962081128747795	0.472547597169157	1	0	tggccttcccacctgtctttGacgtgggcacctacaagttt	9	13	1	1	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	GPR173-130	NM_018969	exon2	c.G481C	p.D161H	GTCTTTGACGTGG	.	247	49	205	0	.	0	0	0	0	0	C	53106284	G	C	53106284	3	2	25	1	0	0	0	0	1	0	0	0	6691	1290	45	3	483	3	GPR173	23	53106284	Missense_Mutation	SNP	G	TCGA-OR-A5JY-01A-31D-A29I-10	30087434	53106284	102164276	143	4217										
AR	367	hgsc.bcm.edu	37	chrX	66765164	66765164	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0902777777777778	13	0.264036200841392	1.75423623995053	3.61407867494824	0.962081128747795	0.472547597169157	1	0	cagtttgctgctgctgcagcAgcagcagcagcagcagcagc	13	13	0	0	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	AR-661	NM_000044	exon1	c.A176T	p.Q59L	TGCAGCAGCAGCA	.	72	8	52	0	.	0	0	0	0	0	T	66765164	A	T	66765164	3	4	25	1	0	0	0	0	1	0	0	0	836	188	7	5	178	5	AR	23	66765164	Missense_Mutation	SNP	A	TCGA-OR-A5JY-01A-31D-A29I-10	13658880	66765164	88505396	144	4218										
YIPF6	286451	broad.mit.edu;bcgsc.ca	37	chrX	67718936	67718936	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0902777777777778	13	0.264036200841392	1.75423623995053	3.61407867494824	0.962081128747795	0.472547597169157	1	0	aagcggaggagtctccaggaGacccggggacagcatcgccc	15	13	1	1	novel		TCGA-OR-A5JY-01A-31D-A29I-10	TCGA-OR-A5JY-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b3a9b723-f07e-4ebb-a275-da480edcbdfc	99a787b5-1f42-4df3-9c85-2468c507cf7e	.	YIPF6-130	NM_001195214	exon1	c.G28A	p.D10N	CCAGGAGACCCGG	.	341	10	344	1	.	35	35	0	0	0	A	67718936	G	A	67718936	3	1	25	1	0	0	0	0	1	0	0	0	17520	942	33	3	30	3	YIPF6	23	67718936	Missense_Mutation	SNP	G	TCGA-OR-A5JY-01A-31D-A29I-10	953772	67718936	87551624	145	4219										
CCDC27	148870	hgsc.bcm.edu	37	chr1	3683112	3683112	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0537634408602151	10	0.929330005145667	1.17075910768737	1.92142230026339	0.73817353908424	0.680172297752053	1	0	cttccagttctccaacctccGagaagataagaaacaccaag	6	13	1	3	novel		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	CCDC27-91	NM_152492	exon9	c.G1466T	p.R489L	ACCTCCGAGAAGA	.	60	4	87	0	.	0	0	0	0	0	T	3683112	G	T	3683112	3	4	26	1	0	0	0	0	1	0	0	0	2807	1058	37	2	1500	2	CCDC27	1	3683112	Missense_Mutation	SNP	G	TCGA-OR-A5K2-01A-11D-A29I-10		3683112	245567509	1	4220										
HNRNPCL1	343069	hgsc.bcm.edu;bcgsc.ca	37	chr1	12907358	12907358	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0537634408602151	10	0.929330005145667	1.17075910768737	1.92142230026339	0.73817353908424	0.680172297752053	1	0	actccagctggtcatcccccTgatcttcattaacatcatca	4	15	5	1	rs74587302		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	HNRNPCL1-68	NM_001013631	exon2	c.A785G	p.Q262R	TCCCCCTGATCTT	.	119	9	77	1	.	0	0	0	0	0	C	12907358	T	C	12907358	3	2	26	1	0	0	0	0	1	0	0	0	7284	1580	55	4	98	4	HNRNPCL1	1	12907358	Missense_Mutation	SNP	T	TCGA-OR-A5K2-01A-11D-A29I-10	9224246	12907358	236343263	2	4221										
OPRD1	4985	hgsc.bcm.edu	37	chr1	29138975	29138975	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0537634408602151	10	0.929330005145667	1.17075910768737	1.92142230026339	0.73817353908424	0.680172297752053	1	0	ggacgcctaccctagcgcctGccccagcgctggcgccaatg	12	18	0	0	rs1042114	byfrequency	TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	OPRD1-69	NM_000911	exon1	c.G80T	p.C27F	GCGCCTGCCCCAG	.	5	4	0	0	G|0.061;T|0.939	0	0	0	0	0	T	29138975	G	T	29138975	3	4	26	1	0	0	0	0	1	0	0	0	10913	1319	46	3	82	3	OPRD1	1	29138975	Missense_Mutation	SNP	G	TCGA-OR-A5K2-01A-11D-A29I-10	16231617	29138975	220111646	3	4222										
DLGAP3	58512	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	35365799	35365799	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0537634408602151	10	0.929330005145667	1.17075910768737	1.92142230026339	0.73817353908424	0.680172297752053	1	0	catggctttgatgtagctgcCgctccgcatcctgcggcagg	13	13	0	1	rs140339373		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	DLGAP3-71	NM_001080418	exon2	c.G1183A	p.G395S	AGCTGCCGCTCCG	.	147	49	98	0	C|0.999;T|0.000	4	1	3	0	0	T	35365799	C	T	35365799	3	4	26	1	0	0	0	0	1	0	0	0	4572	652	23	1	1792	1	DLGAP3	1	35365799	Missense_Mutation	SNP	C	TCGA-OR-A5K2-01A-11D-A29I-10	6226824	35365799	213884822	4	4223										
THRAP3	9967	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	36767183	36767183	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0537634408602151	10	0.929330005145667	1.17075910768737	1.92142230026339	0.73817353908424	0.680172297752053	1	0	gccagaggaagaggctggggCagaggcaactactctgggaa	17	8	1	3	novel		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	THRAP3-663	NM_005119	exon11	c.C2532T	p.G844G	CTGGGGCAGAGGC	.	71	23	120	0	.	22	13	9	0	0	T	36767183	C	T	36767183	2	4	26	1	0	0	0	0	0	0	0	1	15911	697	25	3		3	THRAP3	1	36767183	Silent	SNP	C	TCGA-OR-A5K2-01A-11D-A29I-10	1401384	36767183	212483438	5	4224										
C1orf141	400757	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	67591497	67591497	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0537634408602151	10	0.929330005145667	1.17075910768737	1.92142230026339	0.73817353908424	0.680172297752053	1	0	tttgatattgccttagacgcGgatgtagcaagagcttcttc	10	8	1	3	novel		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	C1orf141-91	NM_001276352	exon4	c.C171G	p.S57S	AGACGCGGATGTA	.	83	19	74	0	.	0	0	0	0	0	C	67591497	G	C	67591497	2	2	26	1	0	0	0	0	0	0	0	1	2007	1103	39	2		2	C1orf141	1	67591497	Silent	SNP	G	TCGA-OR-A5K2-01A-11D-A29I-10	30824314	67591497	181659124	6	4225										
CDC7	8317	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	91979529	91979529	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0537634408602151	10	0.929330005145667	1.17075910768737	1.92142230026339	0.73817353908424	0.680172297752053	1	0	gatctgtaggcctttctgtcCagcgctctgtttttggagaa	11	9	3	1	novel		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	CDC7-1125	NM_003503	exon8	c.C847A	p.Q283K	TCTGTCCAGCGCT	.	67	30	56	0	.	1	1	0	0	0	A	91979529	C	A	91979529	3	1	26	1	0	0	0	0	1	0	0	0	3090	595	21	3	873	3	CDC7	1	91979529	Missense_Mutation	SNP	C	TCGA-OR-A5K2-01A-11D-A29I-10	24388032	91979529	157271092	7	4226										
NBPF9	400818	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	144821919	144821919	+	Splice_Site	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0537634408602151	10	0.929330005145667	1.17075910768737	1.92142230026339	0.73817353908424	0.680172297752053	1	0	cctgtcctgcctggctcatcAggaatctgcaggagtctgaa	11	12	4	1	novel		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	.	NM_001037675	exon13	c.1636-2A>G	.	CTCATCAGGAATC	.	135	42	158	0	.	0	0	0	0	0	G	144821919	A	G	144821919	5	3	26	1	0	0	0	0	0	0	1	0	10228	202	7	4	1680	4	NBPF9	1	144821919	Splice_Site	SNP	A	TCGA-OR-A5K2-01A-11D-A29I-10	52842390	144821919	104428702	8	4227										
NBPF10	100132406	hgsc.bcm.edu	37	chr1	145299738	145299738	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0537634408602151	10	0.929330005145667	1.17075910768737	1.92142230026339	0.73817353908424	0.680172297752053	1	0	tcttctccccagtccctggcCccacctcttctgccacaaac	4	21	4	0	novel		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	.	NM_001039703	exon6	c.C787T	p.P263S	CCTGGCCCCACCT	.	78	4	68	0	.	0	0	0	0	0	T	145299738	C	T	145299738	3	4	26	1	0	0	0	0	1	0	0	0	10221	623	22	3	809	3	NBPF10	1	145299738	Missense_Mutation	SNP	C	TCGA-OR-A5K2-01A-11D-A29I-10	477819	145299738	103950883	9	4228										
NBPF14	25832	bcgsc.ca	37	chr1	148010972	148010972	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0537634408602151	10	0.929330005145667	1.17075910768737	1.92142230026339	0.73817353908424	0.680172297752053	1	0	catgagtcagtcagttcaagAcaacctgaaggagttgaata	10	7	3	4	novel		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	NBPF14-91	NM_015383	exon14	c.T1650C	p.C550C	TTCAAGACAACCT	.	1538	97	1081	61	.	6	6	0	0	0	G	148010972	A	G	148010972	2	3	26	1	0	0	0	0	0	0	0	1	10223	273	10	4		4	NBPF14	1	148010972	Silent	SNP	A	TCGA-OR-A5K2-01A-11D-A29I-10	2711234	148010972	101239649	10	4229										
ARHGEF2	9181	broad.mit.edu	37	chr1	155920822	155920822	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0537634408602151	10	0.929330005145667	1.17075910768737	1.92142230026339	0.73817353908424	0.680172297752053	1	0	cccggagccgggcctccaggCtgccagcttcggttgcccgt	14	17	0	0	novel		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	ARHGEF2-228	NM_001162383	exon20	c.G2501T	p.S834I	TCCAGGCTGCCAG	.	88	9	19	0	.	1	1	0	0	0	A	155920822	C	A	155920822	3	1	26	1	0	0	0	0	1	0	0	0	903	797	28	3	471	3	ARHGEF2	1	155920822	Missense_Mutation	SNP	C	TCGA-OR-A5K2-01A-11D-A29I-10	7909850	155920822	93329799	11	4230										
APOA2	336	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	161192812	161192812	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0537634408602151	10	0.929330005145667	1.17075910768737	1.92142230026339	0.73817353908424	0.680172297752053	1	0	accaggctctccacacatggCtcctttgcctgtctccgaac	7	17	2	0	novel		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	APOA2-91	NM_001643	exon3	c.G81A	p.E27E	ACATGGCTCCTTT	.	145	48	100	0	.	0	0	0	0	0	T	161192812	C	T	161192812	2	4	26	1	0	0	0	0	0	0	0	1	782	796	28	3		3	APOA2	1	161192812	Silent	SNP	C	TCGA-OR-A5K2-01A-11D-A29I-10	5271990	161192812	88057809	12	4231										
IER5	51278	hgsc.bcm.edu	37	chr1	181058313	181058313	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0537634408602151	10	0.929330005145667	1.17075910768737	1.92142230026339	0.73817353908424	0.680172297752053	1	0	gccgcccccgcccgccgctcGtgcctcttggccggagaccg	13	21	1	1	rs3747955		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	IER5-227	NM_016545	exon1	c.G275A	p.R92H	CCGCTCGTGCCTC	.	8	6	1	0	G|0.568;A|0.432	1	0	1	0	0	A	181058313	G	A	181058313	3	1	26	1	0	0	0	0	1	0	0	0	7529	1145	40	1	277	1	IER5	1	181058313	Missense_Mutation	SNP	G	TCGA-OR-A5K2-01A-11D-A29I-10	19865501	181058313	68192308	13	4232										
HSD11B1	3290	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	209905838	209905838	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0537634408602151	10	0.929330005145667	1.17075910768737	1.92142230026339	0.73817353908424	0.680172297752053	1	0	aagcaagtttgctttggatgGgttcttctcctccatcagaa	9	9	3	1	novel		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	HSD11B1-153	NM_005525	exon5	c.G575T	p.G192V	TGGATGGGTTCTT	.	212	75	174	0	.	10	5	5	0	0	T	209905838	G	T	209905838	3	4	26	1	0	0	0	0	1	0	0	0	7396	1232	43	3	593	3	HSD11B1	1	209905838	Missense_Mutation	SNP	G	TCGA-OR-A5K2-01A-11D-A29I-10	28847525	209905838	39344783	14	4233										
PCNXL2	80003	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	233122169	233122169	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0537634408602151	10	0.929330005145667	1.17075910768737	1.92142230026339	0.73817353908424	0.680172297752053	1	0	ccagctcgtgcactgaggtgGacgtctggaggaatgtttgg	16	8	1	1	novel		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	PCNXL2-91	NM_014801	exon33	c.C5909T	p.S1970F	GAGGTGGACGTCT	.	128	8	68	0	.	0	0	0	0	0	A	233122169	G	A	233122169	3	1	26	1	0	0	0	0	1	0	0	0	11621	1174	41	3	512	3	PCNXL2	1	233122169	Missense_Mutation	SNP	G	TCGA-OR-A5K2-01A-11D-A29I-10	23216331	233122169	16128452	15	4234										
ARID4B	51742	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	235345012	235345012	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0537634408602151	10	0.929330005145667	1.17075910768737	1.92142230026339	0.73817353908424	0.680172297752053	1	0	aggtcttggagctccccagcAacactatccacctcaattgt	7	14	2	0	novel		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	ARID4B-228	NM_016374	exon20	c.T3222G	p.V1074V	CCCAGCAACACTA	.	88	24	104	0	.	1	1	0	0	0	C	235345012	A	C	235345012	2	2	26	1	0	0	0	0	0	0	0	1	920	117	5	5		5	ARID4B	1	235345012	Silent	SNP	A	TCGA-OR-A5K2-01A-11D-A29I-10	2222843	235345012	13905609	16	4235										
OR2M5	127059	bcgsc.ca	37	chr1	248309356	248309356	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0537634408602151	10	0.929330005145667	1.17075910768737	1.92142230026339	0.73817353908424	0.680172297752053	1	0	aggtgaccagagcactcaggAaagtgttaggaaagggcaag	15	6	1	2	rs73141283	byfrequency	TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	OR2M5-71	NM_001004690	exon1	c.A907G	p.K303E	CTCAGGAAAGTGT	.	195	7	151	0	A|0.942;G|0.058	0	0	0	0	0	G	248309356	A	G	248309356	3	3	26	1	0	0	0	0	1	0	0	0	11042	247	9	4	909	4	OR2M5	1	248309356	Missense_Mutation	SNP	A	TCGA-OR-A5K2-01A-11D-A29I-10	12964344	248309356	941265	17	4236										
ZFP36L2	678	hgsc.bcm.edu	37	chr2	43452793	43452793	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0537634408602151	10	0.929330005145667	1.17075910768737	1.92142230026339	0.73817353908424	0.680172297752053	1	0	gagtgccgtcggaggaatccCggcgcgaagcccgagctggg	18	12	0	0	rs77160973	byfrequency	TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	ZFP36L2-226	NM_006887	exon2	c.G150C	p.P50P	GAATCCCGGCGCG	.	8	6	0	0	C|0.971;G|0.029	2	0	2	0	0	G	43452793	C	G	43452793	2	3	26	1	0	0	0	0	0	0	0	1	17684	639	23	2		2	ZFP36L2	2	43452793	Silent	SNP	C	TCGA-OR-A5K2-01A-11D-A29I-10		43452793	199746580	18	4237										
NRXN1	9378	hgsc.bcm.edu	37	chr2	51255344	51255344	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0537634408602151	10	0.929330005145667	1.17075910768737	1.92142230026339	0.73817353908424	0.680172297752053	1	0	cgctgcccagctccgcccagCagcccaggagcagcagcgag	13	18	0	0	novel		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	NRXN1-92	NM_004801	exon2	c.G68T	p.C23F	GCCCAGCAGCCCA	.	33	16	3	0	.	0	0	0	0	0	A	51255344	C	A	51255344	3	1	26	1	0	0	0	0	1	0	0	0	10694	710	25	3	4930	3	NRXN1	2	51255344	Missense_Mutation	SNP	C	TCGA-OR-A5K2-01A-11D-A29I-10	7802551	51255344	191944029	19	4238										
CNTNAP5	129684	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	125660522	125660522	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0537634408602151	10	0.929330005145667	1.17075910768737	1.92142230026339	0.73817353908424	0.680172297752053	1	0	gggttttgctggatgcatgtCttccgtccagtacaaccaca	10	11	1	0	novel		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	CNTNAP5-524	NM_130773	exon22	c.C3497G	p.S1166C	GCATGTCTTCCGT	.	164	77	161	0	.	0	0	0	0	0	G	125660522	C	G	125660522	3	3	26	1	0	0	0	0	1	0	0	0	3656	913	32	3	3583	3	CNTNAP5	2	125660522	Missense_Mutation	SNP	C	TCGA-OR-A5K2-01A-11D-A29I-10	74405178	125660522	117538851	20	4239										
HS6ST1	9394	hgsc.bcm.edu	37	chr2	129076016	129076016	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0537634408602151	10	0.929330005145667	1.17075910768737	1.92142230026339	0.73817353908424	0.680172297752053	1	0	ggccgccgggcgcgcccaggCtcagtcctgggcccgcgtac	16	18	1	0	rs201154532		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	HS6ST1-91	NM_004807	exon1	c.G122C	p.S41T	CCCAGGCTCAGTC	.	5	4	1	1	.	0	0	0	0	0	G	129076016	C	G	129076016	3	3	26	1	0	0	0	0	1	0	0	0	7391	797	28	3	1121	3	HS6ST1	2	129076016	Missense_Mutation	SNP	C	TCGA-OR-A5K2-01A-11D-A29I-10	3415494	129076016	114123357	21	4240										
CTLA4	1493	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr2	204735648	204735648	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0537634408602151	10	0.929330005145667	1.17075910768737	1.92142230026339	0.73817353908424	0.680172297752053	1	0	aggcaacggaacccagatttAtgtaattggtgagcaaagcc	11	8	0	2	novel		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	CTLA4-90	NM_005214	exon2	c.A449G	p.Y150C	AGATTTATGTAAT	.	181	11	105	0	.	0	0	0	0	0	G	204735648	A	G	204735648	3	3	26	1	0	0	0	0	1	0	0	0	4017	449	16	4	455	4	CTLA4	2	204735648	Missense_Mutation	SNP	A	TCGA-OR-A5K2-01A-11D-A29I-10	75659632	204735648	38463725	22	4241										
ALPP	250	hgsc.bcm.edu	37	chr2	233246432	233246432	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0537634408602151	10	0.929330005145667	1.17075910768737	1.92142230026339	0.73817353908424	0.680172297752053	1	0	cgacgccgcgcacccggggcGgtccgtggtccccgcgttgc	16	18	0	0	novel		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	ALPP-91	NM_001632	exon11	c.G1535C	p.R512P	CGGGGCGGTCCGT	.	8	2	5	1	.	0	0	0	0	0	C	233246432	G	C	233246432	3	2	26	1	0	0	0	0	1	0	0	0	548	1116	39	2	1577	2	ALPP	2	233246432	Missense_Mutation	SNP	G	TCGA-OR-A5K2-01A-11D-A29I-10	28510784	233246432	9952941	23	4242										
ATP2B2	491	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	10491213	10491213	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0537634408602151	10	0.929330005145667	1.17075910768737	1.92142230026339	0.73817353908424	0.680172297752053	1	0	ttggagtaaaagtcgctgttGgtcatgtcacccatgtttgc	11	8	2	0	novel		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	ATP2B2-95	NM_001683	exon2	c.C15G	p.T5T	GCTGTTGGTCATG	.	146	45	129	0	.	0	0	0	0	0	C	10491213	G	C	10491213	2	2	26	1	0	0	0	0	0	0	0	1	1141	1335	47	3		3	ATP2B2	3	10491213	Silent	SNP	G	TCGA-OR-A5K2-01A-11D-A29I-10		10491213	187531217	24	4243										
GOLGA4	2803	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	37388682	37388682	+	Splice_Site	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0537634408602151	10	0.929330005145667	1.17075910768737	1.92142230026339	0.73817353908424	0.680172297752053	1	0	gatctatttttttatttggcAggtggcaatttgtaccatac	8	6	1	0	novel		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	GOLGA4-93	NM_001172713	exon21	c.6518-2A>T	.	TTTGGCAGGTGGC	.	65	13	61	0	.	0	0	0	0	0	T	37388682	A	T	37388682	5	4	26	1	0	0	0	0	0	0	1	0	6575	202	7	5	6623	5	GOLGA4	3	37388682	Splice_Site	SNP	A	TCGA-OR-A5K2-01A-11D-A29I-10	26897469	37388682	160633748	25	4244										
VILL	50853	broad.mit.edu	37	chr3	38040537	38040537	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0537634408602151	10	0.929330005145667	1.17075910768737	1.92142230026339	0.73817353908424	0.680172297752053	1	0	aggaaccagaagctcggcggGaggggtgagcgggcggggcg	23	8	0	2	rs199499422		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	VILL-90	NM_015873	exon9	c.G1077A	p.G359G	CGGCGGGAGGGGT	.	36	14	28	0	G|0.995;A|0.005	0	0	0	0	0	A	38040537	G	A	38040537	2	1	26	1	0	0	0	0	0	0	0	1	17203	1161	41	3		3	VILL	3	38040537	Silent	SNP	G	TCGA-OR-A5K2-01A-11D-A29I-10	651855	38040537	159981893	26	4245										
CCR3	1232	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	46307366	46307366	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0537634408602151	10	0.929330005145667	1.17075910768737	1.92142230026339	0.73817353908424	0.680172297752053	1	0	aaaaagtacaaggccatccgGctcatttttgtcatcatggc	8	10	3	0	novel		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	CCR3-660	NM_178328	exon3	c.G780C	p.R260R	CATCCGGCTCATT	.	64	14	63	0	.	0	0	0	0	0	C	46307366	G	C	46307366	2	2	26	1	0	0	0	0	0	0	0	1	2948	1190	42	3		3	CCR3	3	46307366	Silent	SNP	G	TCGA-OR-A5K2-01A-11D-A29I-10	8266829	46307366	151715064	27	4246										
FLNB	2317	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	58128391	58128391	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0537634408602151	10	0.929330005145667	1.17075910768737	1.92142230026339	0.73817353908424	0.680172297752053	1	0	ttttaggtgaccgaagaggcCtatgtcccagtgagtgacat	12	8	0	4	novel		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	FLNB-593	NM_001164317	exon32	c.C5289G	p.A1763A	AGAGGCCTATGTC	.	180	37	105	1	.	5	3	2	0	0	G	58128391	C	G	58128391	2	3	26	1	0	0	0	0	0	0	0	1	5953	668	24	3		3	FLNB	3	58128391	Silent	SNP	C	TCGA-OR-A5K2-01A-11D-A29I-10	11821025	58128391	139894039	28	4247										
PROK2	60675	hgsc.bcm.edu	37	chr3	71834120	71834120	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0537634408602151	10	0.929330005145667	1.17075910768737	1.92142230026339	0.73817353908424	0.680172297752053	1	0	ccgcttaccccggtgatcacGgcggcgtccccagcgcgggg	15	17	1	1	novel		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	PROK2-90	NM_001126128	exon1	c.C84G	p.A28A	GATCACGGCGGCG	.	9	4	2	1	.	0	0	0	0	0	C	71834120	G	C	71834120	2	2	26	1	0	0	0	0	0	0	0	1	12583	1103	39	2		2	PROK2	3	71834120	Silent	SNP	G	TCGA-OR-A5K2-01A-11D-A29I-10	13705729	71834120	126188310	29	4248										
CLSTN2	64084	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	140277631	140277631	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0537634408602151	10	0.929330005145667	1.17075910768737	1.92142230026339	0.73817353908424	0.680172297752053	1	0	aagtgccaggggagtgacccTcttccctgatatcaagattg	11	10	2	3	novel		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	CLSTN2-157	NM_022131	exon12	c.T1973C	p.L658P	TGACCCTCTTCCC	.	112	30	89	1	.	1	1	0	0	0	C	140277631	T	C	140277631	3	2	26	1	0	0	0	0	1	0	0	0	3568	1551	54	4	2019	4	CLSTN2	3	140277631	Missense_Mutation	SNP	T	TCGA-OR-A5K2-01A-11D-A29I-10	68443511	140277631	57744799	30	4249										
TSC22D2	9819	hgsc.bcm.edu	37	chr3	150128392	150128392	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0537634408602151	10	0.929330005145667	1.17075910768737	1.92142230026339	0.73817353908424	0.680172297752053	1	0	ccgtgggcaccggccagaatGcttcctcggtgggcgcgcag	16	14	0	1	rs879634	byfrequency	TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	TSC22D2-91	NM_014779	exon1	c.G1255A	p.A419T	CAGAATGCTTCCT	.	10	4	4	2	G|0.797;A|0.203	0	0	0	0	0	A	150128392	G	A	150128392	3	1	26	1	0	0	0	0	1	0	0	0	16646	1319	46	3	1257	3	TSC22D2	3	150128392	Missense_Mutation	SNP	G	TCGA-OR-A5K2-01A-11D-A29I-10	9850761	150128392	47894038	31	4250										
SEC62	7095	ucsc.edu	37	chr3	169700673	169700673	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0537634408602151	10	0.929330005145667	1.17075910768737	1.92142230026339	0.73817353908424	0.680172297752053	1	0	aagaaaaagagaaaaaaaaaGatggtgaaaaggaagaatcc	10	2	0	5	novel		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	SEC62-69	NM_003262	exon4	c.G430A	p.D144N	AAAAAAGATGGTG	.	20	2	31	0	.	36	27	9	0	0	A	169700673	G	A	169700673	3	1	26	1	0	0	0	0	1	0	0	0	14039	942	33	3	444	3	SEC62	3	169700673	Missense_Mutation	SNP	G	TCGA-OR-A5K2-01A-11D-A29I-10	19572281	169700673	28321757	32	4251										
CRIPAK	285464	hgsc.bcm.edu	37	chr4	1388755	1388755	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0537634408602151	10	0.929330005145667	1.17075910768737	1.92142230026339	0.73817353908424	0.680172297752053	1	0	cccgcctgctcacacgtgccCatgcggagtgcccgcctgct	11	19	1	0	rs141481663	byfrequency	TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	CRIPAK-90	NM_175918	exon1	c.C456G	p.P152P	CGTGCCCATGCGG	.	24	9	6	2	C|0.960;G|0.040	7	4	3	0	0	G	1388755	C	G	1388755	2	3	26	1	0	0	0	0	0	0	0	1	3883	581	21	3		3	CRIPAK	4	1388755	Silent	SNP	C	TCGA-OR-A5K2-01A-11D-A29I-10		1388755	189765521	33	4252										
FAM193A	8603	broad.mit.edu	37	chr4	2641522	2641522	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0537634408602151	10	0.929330005145667	1.17075910768737	1.92142230026339	0.73817353908424	0.680172297752053	1	0	tgcataataaacacctgtttGaaaatctggtcttttcggag	8	7	2	1	novel		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	FAM193A-93	NM_003704	exon4	c.G226T	p.E76X	CTGTTTGAAAATC	.	93	4	109	0	.	0	0	0	0	0	T	2641522	G	T	2641522	4	4	26	1	0	0	0	0	0	1	0	0	5540	1291	45	3	232	3	FAM193A	4	2641522	Nonsense_Mutation	SNP	G	TCGA-OR-A5K2-01A-11D-A29I-10	1252767	2641522	188512754	34	4253										
SLIT2	9353	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	20270474	20270474	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0537634408602151	10	0.929330005145667	1.17075910768737	1.92142230026339	0.73817353908424	0.680172297752053	1	0	tcagctgtttcctgagttgcTgtttcttgggactgcgaagc	12	9	2	1	novel		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	SLIT2-521	NM_004787	exon4	c.T365C	p.L122P	AGTTGCTGTTTCT	.	72	25	72	0	.	0	0	0	0	0	C	20270474	T	C	20270474	3	2	26	1	0	0	0	0	1	0	0	0	14775	1580	55	4	379	4	SLIT2	4	20270474	Missense_Mutation	SNP	T	TCGA-OR-A5K2-01A-11D-A29I-10	17628952	20270474	170883802	35	4254										
ZAR1	326340	hgsc.bcm.edu	37	chr4	48492434	48492434	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0537634408602151	10	0.929330005145667	1.17075910768737	1.92142230026339	0.73817353908424	0.680172297752053	1	0	gcgggcggcagctggcagcaGcgcggcaggggctgccttcc	19	14	0	0	rs10008444		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	ZAR1-90	NM_175619	exon1	c.G126C	p.Q42H	GCAGCAGCGCGGC	.	5	5	0	0	G|0.025;C|0.975	0	0	0	0	0	C	48492434	G	C	48492434	3	2	26	1	0	0	0	0	1	0	0	0	17553	962	34	3	128	3	ZAR1	4	48492434	Missense_Mutation	SNP	G	TCGA-OR-A5K2-01A-11D-A29I-10	28221960	48492434	142661842	36	4255										
CWH43	80157	broad.mit.edu	37	chr4	48993967	48993967	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0537634408602151	10	0.929330005145667	1.17075910768737	1.92142230026339	0.73817353908424	0.680172297752053	1	0	ttacaggtacctcagaatttGgggattcattttaggacaga	10	6	2	2	novel		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	CWH43-93	NM_025087	exon4	c.G371T	p.W124L	GAATTTGGGGATT	.	99	5	142	0	.	0	0	0	0	0	T	48993967	G	T	48993967	3	4	26	1	0	0	0	0	1	0	0	0	4079	1357	47	3	385	3	CWH43	4	48993967	Missense_Mutation	SNP	G	TCGA-OR-A5K2-01A-11D-A29I-10	501533	48993967	142160309	37	4256										
DSPP	1834	bcgsc.ca	37	chr4	88537126	88537126	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0537634408602151	10	0.929330005145667	1.17075910768737	1.92142230026339	0.73817353908424	0.680172297752053	1	0	gatagcagcgacagcagcgaCagcagcgatagcagtgacag	14	10	0	1	novel		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	DSPP-90	NM_014208	exon5	c.C3312T	p.D1104D	CAGCGACAGCAGC	.	806	35	683	9	.	0	0	0	0	0	T	88537126	C	T	88537126	2	4	26	1	0	0	0	0	0	0	0	1	4793	477	17	3		3	DSPP	4	88537126	Silent	SNP	C	TCGA-OR-A5K2-01A-11D-A29I-10	39543159	88537126	102617150	38	4257										
PIK3R1	5295	hgsc.bcm.edu	37	chr5	67522734	67522734	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0537634408602151	10	0.929330005145667	1.17075910768737	1.92142230026339	0.73817353908424	0.680172297752053	1	0	ggaacttacgtagaatatatTggaaggaaaaaaatctcgcc	9	6	1	1	novel		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	PIK3R1-4332	NM_181523	exon2	c.T231C	p.I77I	ATATATTGGAAGG	.	52	3	98	0	.	0	0	0	0	0	C	67522734	T	C	67522734	2	2	26	1	0	0	0	0	0	0	0	1	11947	1800	63	4		4	PIK3R1	5	67522734	Silent	SNP	T	TCGA-OR-A5K2-01A-11D-A29I-10		67522734	113392526	39	4258										
GFM2	84340	ucsc.edu;bcgsc.ca	37	chr5	74037386	74037386	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0537634408602151	10	0.929330005145667	1.17075910768737	1.92142230026339	0.73817353908424	0.680172297752053	1	0	taacaaatcaaaattctcacTaaattcttctaaaaccaagt	1	9	4	0	rs16872235	byfrequency	TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	GFM2-90	NM_032380	exon11	c.A898T	p.S300C	TCTCACTAAATTC	.	47	8	62	0	T|0.878;A|0.122	7	7	0	0	0	A	74037386	T	A	74037386	3	1	26	1	0	0	0	0	1	0	0	0	6362	1522	53	5	1517	5	GFM2	5	74037386	Missense_Mutation	SNP	T	TCGA-OR-A5K2-01A-11D-A29I-10	6514652	74037386	106877874	40	4259										
C5orf56	441108	bcgsc.ca	37	chr5	131805735	131805735	+	RNA	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0537634408602151	10	0.929330005145667	1.17075910768737	1.92142230026339	0.73817353908424	0.680172297752053	1	0	acatgaatcttctctagcccCgaacagcacagtgaatggat	8	11	2	2	rs2706379	byfrequency	TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	C5orf56-90	.	.	.	.	TAGCCCCGAACAG	.	276	11	283	4	C|0.735;T|0.265	1	1	0	0	0	T	131805735	C	T	131805735	1	4	26	0	1	0	0	0	0	0	0	0	2318	667	23	1		1	C5orf56	5	131805735	RNA	SNP	C	TCGA-OR-A5K2-01A-11D-A29I-10	57768349	131805735	49109525	41	4260										
PCDHB2	56133	broad.mit.edu	37	chr5	140476411	140476411	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0537634408602151	10	0.929330005145667	1.17075910768737	1.92142230026339	0.73817353908424	0.680172297752053	1	0	ctgctgctcccggaggcggcAccggcccaggcccaggccga	15	18	0	0	novel		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	PCDHB2-96	NM_018936	exon1	c.A2037C	p.A679A	GGCGGCACCGGCC	.	177	5	42	0	.	5	5	0	0	0	C	140476411	A	C	140476411	2	2	26	1	0	0	0	0	0	0	0	1	11571	146	6	5		5	PCDHB2	5	140476411	Silent	SNP	A	TCGA-OR-A5K2-01A-11D-A29I-10	8670676	140476411	40438849	42	4261										
PCDHB6	56130	hgsc.bcm.edu	37	chr5	140531592	140531592	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0537634408602151	10	0.929330005145667	1.17075910768737	1.92142230026339	0.73817353908424	0.680172297752053	1	0	cgagccgggctacctggtgaCcaaggtggtggcggtggacg	19	10	0	1	rs55834559	byfrequency	TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	PCDHB6-91	NM_018939	exon1	c.C1754T	p.T585I	TGGTGACCAAGGT	.	36	9	8	1	C|0.966;T|0.034	47	45	2	0	0	T	140531592	C	T	140531592	3	4	26	1	0	0	0	0	1	0	0	0	11575	507	18	3	1756	3	PCDHB6	5	140531592	Missense_Mutation	SNP	C	TCGA-OR-A5K2-01A-11D-A29I-10	55181	140531592	40383668	43	4262										
PCDHB16	57717	hgsc.bcm.edu	37	chr5	140564048	140564048	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0537634408602151	10	0.929330005145667	1.17075910768737	1.92142230026339	0.73817353908424	0.680172297752053	1	0	gagcgcgacgcagccaagcaGaggctggtggtgctggtcaa	17	10	1	1	rs76350555		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	PCDHB16-92	NM_020957	exon1	c.G1914C	p.Q638H	CAAGCAGAGGCTG	.	49	14	5	2	.	8	7	1	0	0	C	140564048	G	C	140564048	3	2	26	1	0	0	0	0	1	0	0	0	11570	933	33	3	1916	3	PCDHB16	5	140564048	Missense_Mutation	SNP	G	TCGA-OR-A5K2-01A-11D-A29I-10	32456	140564048	40351212	44	4263										
GLRA1	2741	broad.mit.edu	37	chr5	151202503	151202503	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0537634408602151	10	0.929330005145667	1.17075910768737	1.92142230026339	0.73817353908424	0.680172297752053	1	0	ataggcagagaagttaaagcGgccttctccagcttcatcct	9	11	2	1	novel		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	GLRA1-91	NM_001146040	exon9	c.C1105T	p.R369C	TAAAGCGGCCTTC	.	56	4	48	0	.	0	0	0	0	0	A	151202503	G	A	151202503	3	1	26	1	0	0	0	0	1	0	0	0	6474	1116	39	1	272	1	GLRA1	5	151202503	Missense_Mutation	SNP	G	TCGA-OR-A5K2-01A-11D-A29I-10	10638455	151202503	29712757	45	4264										
ZFP2	80108	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr5	178359644	178359644	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0537634408602151	10	0.929330005145667	1.17075910768737	1.92142230026339	0.73817353908424	0.680172297752053	1	0	cctatcagtgtaatgaatgcGgaaaagccttcagccggagt	11	9	2	1	rs189472573		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	ZFP2-93	NM_030613	exon5	c.G1330A	p.G444R	GAATGCGGAAAAG	.	64	6	63	0	G|0.999;A|0.001	2	2	0	0	0	A	178359644	G	A	178359644	3	1	26	1	0	0	0	0	1	0	0	0	17678	1117	39	1	1332	1	ZFP2	5	178359644	Missense_Mutation	SNP	G	TCGA-OR-A5K2-01A-11D-A29I-10	27157141	178359644	2555616	46	4265										
FOXC1	2296	hgsc.bcm.edu	37	chr6	1611345	1611345	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0537634408602151	10	0.929330005145667	1.17075910768737	1.92142230026339	0.73817353908424	0.680172297752053	1	0	tccgcagccgccgcccgtgcGcatccaggacatcaagaccg	11	18	1	1	novel		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	FOXC1-227	NM_001453	exon1	c.G665T	p.R222L	CCGTGCGCATCCA	.	3	3	0	0	.	0	0	0	0	0	T	1611345	G	T	1611345	3	4	26	1	0	0	0	0	1	0	0	0	6013	1087	38	2	667	2	FOXC1	6	1611345	Missense_Mutation	SNP	G	TCGA-OR-A5K2-01A-11D-A29I-10		1611345	169503722	47	4266										
TRIM38	10475	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	25967015	25967015	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0537634408602151	10	0.929330005145667	1.17075910768737	1.92142230026339	0.73817353908424	0.680172297752053	1	0	aagccctcaaagagacggatCaagaaatgtcatgtgaggaa	11	7	3	3	novel		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	TRIM38-226	NM_006355	exon3	c.C265G	p.Q89E	ACGGATCAAGAAA	.	290	56	172	0	.	1	0	1	0	0	G	25967015	C	G	25967015	3	3	26	1	0	0	0	0	1	0	0	0	16550	827	29	3	267	3	TRIM38	6	25967015	Missense_Mutation	SNP	C	TCGA-OR-A5K2-01A-11D-A29I-10	24355670	25967015	145148052	48	4267										
C6orf10	10665	bcgsc.ca	37	chr6	32307382	32307382	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0537634408602151	10	0.929330005145667	1.17075910768737	1.92142230026339	0.73817353908424	0.680172297752053	1	0	atatgggaaacttacaaggaGgttcttcagttgtttgtaaa	10	4	2	0	rs1033500	byfrequency	TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	C6orf10-91	.	.	.	.	CAAGGAGGTTCTT	.	121	5	165	2	G|0.526;T|0.075	0	0	0	0	0	A	32307382	G	A	32307382	3	1	26	1	0	0	0	0	1	0	0	0	2323	1000	35	3	1068	3	C6orf10	6	32307382	Missense_Mutation	SNP	G	TCGA-OR-A5K2-01A-11D-A29I-10	6340367	32307382	138807685	49	4268										
EEF1A1	1915	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr6	74228419	74228421	+	Frame_Shift_Del	DEL	ACC	ACC	-													0.0537634408602151	10	0.929330005145667	1.17075910768737	1.92142230026339	0.73817353908424	0.680172297752053	1	0	actttgtttacagccaacttAccaccaattttgtagacatc					novel		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	ACC	ACC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	EEF1A1-226	NM_001402	exon5	c.772_772del	p.258_258del	CAACTTACCACCA	.	186	48	173	0	.	0	0	0	0	0	-	74228421	ACC	-	74228419	7	5	26	1	0	1	0	1	0	0	0	0	4934	405	14	0	630	0	EEF1A1	6	74228419	Frame_Shift_Del	DEL	ACC	TCGA-OR-A5K2-01A-11D-A29I-10	41921037	74228419	96886648	50	4269										
POU3F2	5454	hgsc.bcm.edu	37	chr6	99283376	99283376	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0537634408602151	10	0.929330005145667	1.17075910768737	1.92142230026339	0.73817353908424	0.680172297752053	1	0	gccggcgggcagccggccggTctgcaccaccacggcctgcg	16	18	1	0	rs195860		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	POU3F2-90	NM_005604	exon1	c.T627G	p.G209G	GGCCGGTCTGCAC	.	4	3	0	0	T|0.089;G|0.911	0	0	0	0	0	G	99283376	T	G	99283376	2	3	26	1	0	0	0	0	0	0	0	1	12304	1654	58	5		5	POU3F2	6	99283376	Silent	SNP	T	TCGA-OR-A5K2-01A-11D-A29I-10	25054957	99283376	71831691	51	4270										
CTGF	1490	hgsc.bcm.edu	37	chr6	132271980	132271980	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0537634408602151	10	0.929330005145667	1.17075910768737	1.92142230026339	0.73817353908424	0.680172297752053	1	0	aggcccttgtgcgggtcgcaTgggtcgcgctcggtgcacag	17	12	0	0	rs6934749		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	CTGF-90	NM_001901	exon2	c.A219C	p.P73P	GTCGCATGGGTCG	.	3	3	0	0	T|0.000;G|1.000	0	0	0	0	0	G	132271980	T	G	132271980	2	3	26	1	0	0	0	0	0	0	0	1	4014	1451	51	5		5	CTGF	6	132271980	Silent	SNP	T	TCGA-OR-A5K2-01A-11D-A29I-10	32988604	132271980	38843087	52	4271										
MAP7	9053	hgsc.bcm.edu	37	chr6	136682172	136682172	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0537634408602151	10	0.929330005145667	1.17075910768737	1.92142230026339	0.73817353908424	0.680172297752053	1	0	ggcgcgctctgcctcctcccGctcgcgcagcgcccgctcct	11	22	1	0	rs2076190	byfrequency	TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	MAP7-90	NM_001198609	exon12	c.C1762T	p.R588W	CCTCCCGCTCGCG	.	13	10	1	0	G|0.243;A|0.757	2	0	2	0	0	A	136682172	G	A	136682172	3	1	26	1	0	0	0	0	1	0	0	0	9294	1086	38	1	605	1	MAP7	6	136682172	Missense_Mutation	SNP	G	TCGA-OR-A5K2-01A-11D-A29I-10	4410192	136682172	34432895	53	4272										
IPCEF1	26034	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr6	154533922	154533922	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0537634408602151	10	0.929330005145667	1.17075910768737	1.92142230026339	0.73817353908424	0.680172297752053	1	0	accaaagactgagtctgggaAgcgtgaggagggggtggtgt	19	5	1	3	novel		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	IPCEF1-90	NM_001130699	exon10	c.T519A	p.A173A	CTGGGAAGCGTGA	.	138	12	103	0	.	0	0	0	0	0	T	154533922	A	T	154533922	2	4	26	1	0	0	0	0	0	0	0	1	7812	59	3	5		5	IPCEF1	6	154533922	Silent	SNP	A	TCGA-OR-A5K2-01A-11D-A29I-10	17851750	154533922	16581145	54	4273										
ARID1B	57492	hgsc.bcm.edu	37	chr6	157099362	157099362	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0537634408602151	10	0.929330005145667	1.17075910768737	1.92142230026339	0.73817353908424	0.680172297752053	1	0	ccaccaccatgcccaccaccTccaccaccaccacgcactac	2	25	0	0	novel		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	ARID1B-154	NM_017519	exon1	c.T299A	p.L100H	ACCACCTCCACCA	.	49	4	15	0	.	0	0	0	0	0	A	157099362	T	A	157099362	3	1	26	1	0	0	0	0	1	0	0	0	914	1551	54	5	301	5	ARID1B	6	157099362	Missense_Mutation	SNP	T	TCGA-OR-A5K2-01A-11D-A29I-10	2565440	157099362	14015705	55	4274										
PRR18	285800	hgsc.bcm.edu	37	chr6	166720806	166720806	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0537634408602151	10	0.929330005145667	1.17075910768737	1.92142230026339	0.73817353908424	0.680172297752053	1	0	cggccccgcgcggcagccgcGgactccacgccgcgcagcca	14	21	0	0	rs911203	byfrequency	TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	PRR18-514	NM_175922	exon1	c.C825G	p.S275S	AGCCGCGGACTCC	.	2	2	1	1	G|0.796;C|0.204	0	0	0	0	0	C	166720806	G	C	166720806	2	2	26	1	0	0	0	0	0	0	0	1	12622	1103	39	2		2	PRR18	6	166720806	Silent	SNP	G	TCGA-OR-A5K2-01A-11D-A29I-10	9621444	166720806	4394261	56	4275										
TBP	6908	hgsc.bcm.edu	37	chr6	170871004	170871004	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0537634408602151	10	0.929330005145667	1.17075910768737	1.92142230026339	0.73817353908424	0.680172297752053	1	0	gagcaacaaaggcagcagcaGcaacaacaacagcagcagca	10	12	0	0	novel		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	TBP-91	NM_003194	exon3	c.G180A	p.Q60Q	GCAGCAGCAACAA	.	87	5	61	2	.	5	5	0	0	0	A	170871004	G	A	170871004	2	1	26	1	0	0	0	0	0	0	0	1	15681	962	34	3		3	TBP	6	170871004	Silent	SNP	G	TCGA-OR-A5K2-01A-11D-A29I-10	4150198	170871004	244063	57	4276			1	20		2	2	13	G		7.209815e-05
TBP	6908	hgsc.bcm.edu	37	chr6	170871016	170871016	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0537634408602151	10	0.929330005145667	1.17075910768737	1.92142230026339	0.73817353908424	0.680172297752053	1	0	cagcagcagcaacaacaacaGcagcagcagcagcagcagca	10	14	0	0	novel		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	TBP-91	NM_003194	exon3	c.G192A	p.Q64Q	ACAACAGCAGCAG	.	94	9	57	0	.	3	3	0	0	0	A	170871016	G	A	170871016	2	1	26	1	0	0	0	0	0	0	0	1	15681	962	34	3		3	TBP	6	170871016	Silent	SNP	G	TCGA-OR-A5K2-01A-11D-A29I-10	12	170871016	244051	58	4277			1	20		2	2	13	G		7.209815e-05
EIF3B	8662	hgsc.bcm.edu	37	chr7	2394991	2394991	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0537634408602151	10	0.929330005145667	1.17075910768737	1.92142230026339	0.73817353908424	0.680172297752053	1	0	gaaccccgggcgctggagaaCggcgacgcggacgagccctc	16	15	0	1	rs11551167	byfrequency	TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	EIF3B-68	NM_001037283	exon1	c.C435T	p.N145N	GGAGAACGGCGAC	.	6	4	0	0	C|0.787;T|0.213	7	4	3	0	0	T	2394991	C	T	2394991	2	4	26	1	0	0	0	0	0	0	0	1	5024	535	19	1		1	EIF3B	7	2394991	Silent	SNP	C	TCGA-OR-A5K2-01A-11D-A29I-10		2394991	156743672	59	4278										
TNRC18	84629	broad.mit.edu	37	chr7	5352548	5352548	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0537634408602151	10	0.929330005145667	1.17075910768737	1.92142230026339	0.73817353908424	0.680172297752053	1	0	gaggaggaggaggaggaggaTgaggacgaggaagaggagga	24	1	0	2	rs112615228	alternate_allele	TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	TNRC18-46	NM_001080495	exon27	c.A7974C	p.S2658S	GGAGGATGAGGAC	.	85	3	43	0	T|0.500;A|0.500	0	0	0	0	0	G	5352548	T	G	5352548	2	3	26	1	0	0	0	0	0	0	0	1	16376	1451	51	5		5	TNRC18	7	5352548	Silent	SNP	T	TCGA-OR-A5K2-01A-11D-A29I-10	2957557	5352548	153786115	60	4279										
SP8	221833	hgsc.bcm.edu	37	chr7	20824953	20824953	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0537634408602151	10	0.929330005145667	1.17075910768737	1.92142230026339	0.73817353908424	0.680172297752053	1	0	gcggaggagccgccgccgccGcccccgccgccgccgccgct	15	23	0	0	novel		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	SP8-91	NM_182700	exon2	c.C483G	p.G161G	GCCGCCGCCCCCG	.	12	3	5	0	.	0	0	0	0	0	C	20824953	G	C	20824953	2	2	26	1	0	0	0	0	0	0	0	1	15005	1074	38	2		2	SP8	7	20824953	Silent	SNP	G	TCGA-OR-A5K2-01A-11D-A29I-10	15472405	20824953	138313710	61	4280										
GLI3	2737	hgsc.bcm.edu	37	chr7	42005678	42005678	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0537634408602151	10	0.929330005145667	1.17075910768737	1.92142230026339	0.73817353908424	0.680172297752053	1	0	ccctcctcacgccgtggcccGgcgcatcgtgcggctgcagg	14	18	1	0	rs929387	byfrequency	TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	GLI3-1149	NM_000168	exon15	c.C2993T	p.P998L	TGGCCCGGCGCAT	.	3	2	0	0	G|0.565;A|0.435	0	0	0	0	0	A	42005678	G	A	42005678	3	1	26	1	0	0	0	0	1	0	0	0	6459	1116	39	1	1753	1	GLI3	7	42005678	Missense_Mutation	SNP	G	TCGA-OR-A5K2-01A-11D-A29I-10	21180725	42005678	117132985	62	4281										
RAMP3	10268	hgsc.bcm.edu	37	chr7	45197433	45197433	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0537634408602151	10	0.929330005145667	1.17075910768737	1.92142230026339	0.73817353908424	0.680172297752053	1	0	tgcggccggccagccatggaGactggagcgctgcggcgccc	17	15	0	1	rs67477213		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	RAMP3-90	NM_005856	exon1	c.G6A	p.E2E	CATGGAGACTGGA	.	11	3	0	0	G|0.760;A|0.240	7	4	3	0	0	A	45197433	G	A	45197433	2	1	26	1	0	0	0	0	0	0	0	1	13058	933	33	3		3	RAMP3	7	45197433	Silent	SNP	G	TCGA-OR-A5K2-01A-11D-A29I-10	3191755	45197433	113941230	63	4282										
CALD1	800	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	134644847	134644847	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0537634408602151	10	0.929330005145667	1.17075910768737	1.92142230026339	0.73817353908424	0.680172297752053	1	0	ttttcatcccccactgcagcAggcacaccaaataaggtgag	8	13	1	1	novel		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	CALD1-226	NM_033138	exon12	c.A2184G	p.A728A	TGCAGCAGGCACA	.	224	43	185	0	.	4	4	0	0	0	G	134644847	A	G	134644847	2	3	26	1	0	0	0	0	0	0	0	1	2587	175	7	4		4	CALD1	7	134644847	Silent	SNP	A	TCGA-OR-A5K2-01A-11D-A29I-10	89447414	134644847	24493816	64	4283										
KIAA1549	57670	bcgsc.ca	37	chr7	138602432	138602432	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0537634408602151	10	0.929330005145667	1.17075910768737	1.92142230026339	0.73817353908424	0.680172297752053	1	0	cactcggcatcagagacagaGacgcaggtgcttccgaaggc	13	12	1	2	rs61734132	byfrequency	TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	KIAA1549-369	NM_020910	exon2	c.C1940G	p.S647C	GACAGAGACGCAG	.	67	4	92	1	G|0.937;C|0.063	0	0	0	0	0	C	138602432	G	C	138602432	3	2	26	1	0	0	0	0	1	0	0	0	8265	942	33	3	3988	3	KIAA1549	7	138602432	Missense_Mutation	SNP	G	TCGA-OR-A5K2-01A-11D-A29I-10	3957585	138602432	20536231	65	4284										
GBX1	2636	hgsc.bcm.edu	37	chr7	150864240	150864240	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0537634408602151	10	0.929330005145667	1.17075910768737	1.92142230026339	0.73817353908424	0.680172297752053	1	0	ggctcggggttgtttcgggcGgcagtggcggcggcggcggc	23	10	0	0	rs13241978	byfrequency	TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	GBX1-68	NM_001098834	exon1	c.C396G	p.A132A	TCGGGCGGCAGTG	.	5	5	1	0	G|0.699;C|0.301	0	0	0	0	0	C	150864240	G	C	150864240	2	2	26	1	0	0	0	0	0	0	0	1	6300	1103	39	2		2	GBX1	7	150864240	Silent	SNP	G	TCGA-OR-A5K2-01A-11D-A29I-10	12261808	150864240	8274423	66	4285										
MSR1	4481	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr8	16032762	16032762	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0537634408602151	10	0.929330005145667	1.17075910768737	1.92142230026339	0.73817353908424	0.680172297752053	1	0	gtaaagggcaatcagtgcagCtttgaaggacttcagtttct	11	7	3	1	novel		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	MSR1-91	NM_138715	exon3	c.G151A	p.A51T	GTGCAGCTTTGAA	.	113	31	124	1	.	1	1	0	0	0	T	16032762	C	T	16032762	3	4	26	1	0	0	0	0	1	0	0	0	9914	797	28	3	1284	3	MSR1	8	16032762	Missense_Mutation	SNP	C	TCGA-OR-A5K2-01A-11D-A29I-10		16032762	130331260	67	4286										
PXDNL	137902	hgsc.bcm.edu	37	chr8	52321843	52321843	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0537634408602151	10	0.929330005145667	1.17075910768737	1.92142230026339	0.73817353908424	0.680172297752053	1	0	ccacactgtggcgaccagccGgggcggcgggaggggctggc	20	13	0	0	rs11992240	byfrequency	TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	PXDNL-70	NM_144651	exon17	c.C2341G	p.R781G	CCAGCCGGGGCGG	.	7	6	0	0	G|0.840;C|0.160	0	0	0	0	0	C	52321843	G	C	52321843	3	2	26	1	0	0	0	0	1	0	0	0	12883	1115	39	2	2078	2	PXDNL	8	52321843	Missense_Mutation	SNP	G	TCGA-OR-A5K2-01A-11D-A29I-10	36289081	52321843	94042179	68	4287										
FZD6	8323	bcgsc.ca	37	chr8	104343686	104343686	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0537634408602151	10	0.929330005145667	1.17075910768737	1.92142230026339	0.73817353908424	0.680172297752053	1	0	acatctctgcttgttcacccGgtttcaggagtgagaaaaga	10	9	3	2	rs1053917	byfrequency	TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	FZD6-658	NM_003506	exon7	c.G2070A	p.P690P	TCACCCGGTTTCA	.	113	6	116	0	G|0.585;A|0.415	2	2	0	0	0	A	104343686	G	A	104343686	2	1	26	1	0	0	0	0	0	0	0	1	6153	1103	39	1		1	FZD6	8	104343686	Silent	SNP	G	TCGA-OR-A5K2-01A-11D-A29I-10	52021843	104343686	42020336	69	4288										
ATAD2	29028	hgsc.bcm.edu	37	chr8	124382159	124382167	+	In_Frame_Del	DEL	TCATCATCA	TCATCATCA	-													0.0537634408602151	10	0.929330005145667	1.17075910768737	1.92142230026339	0.73817353908424	0.680172297752053	1	0	cttcttcatcttcatcatctTcatcatcatcatcatcatca					rs112640031	byfrequency	TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	TCATCATCA	TCATCATCA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	ATAD2-92	NM_014109	exon7	c.825_833del	p.275_278del	TCATCTTCATCAT	.	82	21	61	0	-|0.250;CAT|0.500;CATCAT|0.250	0	0	0	0	0	-	124382167	TCATCATCA	-	124382159	7	5	26	1	0	1	0	1	0	0	0	0	1072	1783	62	0	3427	0	ATAD2	8	124382159	In_Frame_Del	DEL	TCATCATCA	TCGA-OR-A5K2-01A-11D-A29I-10	20038473	124382159	21981863	70	4289										
ZFAT	57623	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr8	135622778	135622778	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0537634408602151	10	0.929330005145667	1.17075910768737	1.92142230026339	0.73817353908424	0.680172297752053	1	0	tcttcgccccagaaagctgtCtggcctcctttcctgagatc	8	15	2	2	novel		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	ZFAT-90	NM_020863	exon4	c.G569T	p.R190I	AGCTGTCTGGCCT	.	157	12	151	0	.	0	0	0	0	0	A	135622778	C	A	135622778	3	1	26	1	0	0	0	0	1	0	0	0	17669	913	32	3	3214	3	ZFAT	8	135622778	Missense_Mutation	SNP	C	TCGA-OR-A5K2-01A-11D-A29I-10	11240619	135622778	10741244	71	4290										
ZNF696	79943	hgsc.bcm.edu	37	chr8	144378868	144378868	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0537634408602151	10	0.929330005145667	1.17075910768737	1.92142230026339	0.73817353908424	0.680172297752053	1	0	ggcttcttccggcaccagcgActccacacgggcgagaagcc	12	16	1	1	rs7386259	byfrequency	TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	ZNF696-90	NM_030895	exon3	c.A1023G	p.R341R	CCAGCGACTCCAC	.	3	3	0	0	A|0.118;G|0.882	0	0	0	0	0	G	144378868	A	G	144378868	2	3	26	1	0	0	0	0	0	0	0	1	18136	262	10	4		4	ZNF696	8	144378868	Silent	SNP	A	TCGA-OR-A5K2-01A-11D-A29I-10	8756090	144378868	1985154	72	4291										
PLEC	5339	hgsc.bcm.edu	37	chr8	144990528	144990528	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0537634408602151	10	0.929330005145667	1.17075910768737	1.92142230026339	0.73817353908424	0.680172297752053	1	0	cgcgagccggtgcgggagccAgcggtagagccggagccgct	19	13	0	1	rs7014582	byfrequency	TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	PLEC-141	NM_201380	exon32	c.T13872C	p.A4624A	GGAGCCAGCGGTA	.	12	6	1	0	A|0.536;G|0.464	30	13	17	0	0	G	144990528	A	G	144990528	2	3	26	1	0	0	0	0	0	0	0	1	12081	175	7	4		4	PLEC	8	144990528	Silent	SNP	A	TCGA-OR-A5K2-01A-11D-A29I-10	611660	144990528	1373494	73	4292			2	21		4	4	11257	N	C_A	4.899723e-05
PLEC	5339	hgsc.bcm.edu	37	chr8	144998190	144998190	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0537634408602151	10	0.929330005145667	1.17075910768737	1.92142230026339	0.73817353908424	0.680172297752053	1	0	gccagctgccgctgcctcgcAgcctccagctcggcctgctc	11	20	0	0	rs2857829	byfrequency	TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	PLEC-141	NM_201380	exon31	c.T6318C	p.A2106A	CCTCGCAGCCTCC	.	11	6	1	0	A|0.738;G|0.262	1	1	0	0	0	G	144998190	A	G	144998190	2	3	26	1	0	0	0	0	0	0	0	1	12081	175	7	4		4	PLEC	8	144998190	Silent	SNP	A	TCGA-OR-A5K2-01A-11D-A29I-10	7662	144998190	1365832	74	4293			2	21		4	4	11257	N	C_A	4.899723e-05
PLEC	5339	hgsc.bcm.edu	37	chr8	144999417	144999417	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0537634408602151	10	0.929330005145667	1.17075910768737	1.92142230026339	0.73817353908424	0.680172297752053	1	0	agggccacctgtacctgccgCgctcgctccacctcggcctg	11	19	0	0	rs55836855	byfrequency	TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	PLEC-141	NM_201380	exon31	c.G5091A	p.A1697A	CTGCCGCGCTCGC	.	9	6	1	1	C|0.731;T|0.269	1	0	1	0	0	T	144999417	C	T	144999417	2	4	26	1	0	0	0	0	0	0	0	1	12081	755	27	1		1	PLEC	8	144999417	Silent	SNP	C	TCGA-OR-A5K2-01A-11D-A29I-10	1227	144999417	1364605	75	4294			2	21		4	4	11257	N	C_A	4.899723e-05
PLEC	5339	hgsc.bcm.edu	37	chr8	145001784	145001784	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0537634408602151	10	0.929330005145667	1.17075910768737	1.92142230026339	0.73817353908424	0.680172297752053	1	0	agcctgccagcgctcaagcaActgggcgacccgctcccgcc	11	19	1	0	rs3135109	byfrequency	TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	PLEC-141	NM_201380	exon27	c.T3961C	p.L1321L	CAAGCAACTGGGC	.	6	2	0	0	G|0.246;A|0.754	3	1	2	0	0	G	145001784	A	G	145001784	2	3	26	1	0	0	0	0	0	0	0	1	12081	40	2	4		4	PLEC	8	145001784	Silent	SNP	A	TCGA-OR-A5K2-01A-11D-A29I-10	2367	145001784	1362238	76	4295			2	21		4	4	11257	N	C_A	4.899723e-05
ERMP1	79956	hgsc.bcm.edu	37	chr9	5832728	5832728	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0537634408602151	10	0.929330005145667	1.17075910768737	1.92142230026339	0.73817353908424	0.680172297752053	1	0	aactccccgcggtgtccagcGgccccgcgtagcacgagctg	13	17	0	0	rs1131727	byfrequency	TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	ERMP1-69	NM_024896	exon1	c.C300G	p.A100A	TCCAGCGGCCCCG	.	13	7	0	0	G|0.572;C|0.428	0	0	0	0	0	C	5832728	G	C	5832728	2	2	26	1	0	0	0	0	0	0	0	1	5249	1103	39	2		2	ERMP1	9	5832728	Silent	SNP	G	TCGA-OR-A5K2-01A-11D-A29I-10		5832728	135380703	77	4296										
FBP2	8789	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr9	97355868	97355868	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0537634408602151	10	0.929330005145667	1.17075910768737	1.92142230026339	0.73817353908424	0.680172297752053	1	0	agaccggccttgcgcacagcCgaggagatggctttgatggc	15	11	0	3	novel		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	FBP2-226	NM_003837	exon1	c.G141A	p.S47S	CACAGCCGAGGAG	.	310	44	156	1	.	0	0	0	0	0	T	97355868	C	T	97355868	2	4	26	1	0	0	0	0	0	0	0	1	5725	639	23	1		1	FBP2	9	97355868	Silent	SNP	C	TCGA-OR-A5K2-01A-11D-A29I-10	91523140	97355868	43857563	78	4297										
PAEP	5047	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	138457640	138457640	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0537634408602151	10	0.929330005145667	1.17075910768737	1.92142230026339	0.73817353908424	0.680172297752053	1	0	tcctcccacagagccgtgccGtttctaggtgagctcctgcc	10	16	1	2	rs143616209	byfrequency	TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	PAEP-68	NM_002571	exon6	c.G536A	p.R179H	CGTGCCGTTTCTA	.	247	41	132	0	G|0.997;A|0.003	0	0	0	0	0	A	138457640	G	A	138457640	3	1	26	1	0	0	0	0	1	0	0	0	11411	1145	40	1	558	1	PAEP	9	138457640	Missense_Mutation	SNP	G	TCGA-OR-A5K2-01A-11D-A29I-10	41101772	138457640	2755791	79	4298										
INPP5E	56623	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	139324136	139324136	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0537634408602151	10	0.929330005145667	1.17075910768737	1.92142230026339	0.73817353908424	0.680172297752053	1	0	ttcagcaaacttcaagaaacGgagcagatggtgctggagtt	12	7	2	2	rs201735585		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	INPP5E-227	NM_019892	exon10	c.C1926T	p.S642S	AGAAACGGAGCAG	.	209	41	114	0	G|0.999;A|0.000	14	12	2	0	0	A	139324136	G	A	139324136	2	1	26	1	0	0	0	0	0	0	0	1	7778	1103	39	1		1	INPP5E	9	139324136	Silent	SNP	G	TCGA-OR-A5K2-01A-11D-A29I-10	866496	139324136	1889295	80	4299										
NOXA1	10811	hgsc.bcm.edu	37	chr9	140317999	140317999	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0537634408602151	10	0.929330005145667	1.17075910768737	1.92142230026339	0.73817353908424	0.680172297752053	1	0	gccatggcctctctgggggaCctggtgcgcgcctggcacct	15	15	1	0	rs112864733		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	NOXA1-90	NM_006647	exon1	c.C18G	p.D6E	GGGGGACCTGGTG	.	3	3	2	0	C|0.934;G|0.066	0	0	0	0	0	G	140317999	C	G	140317999	3	3	26	1	0	0	0	0	1	0	0	0	10589	506	18	3	20	3	NOXA1	9	140317999	Missense_Mutation	SNP	C	TCGA-OR-A5K2-01A-11D-A29I-10	993863	140317999	895432	81	4300										
GPRIN2	9721	hgsc.bcm.edu	37	chr10	47000217	47000217	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0537634408602151	10	0.929330005145667	1.17075910768737	1.92142230026339	0.73817353908424	0.680172297752053	1	0	tgtcatgcagtccctgcggcGccccagctgctgcggctgct	13	16	1	0	rs72780221	byfrequency	TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	GPRIN2-90	NM_014696	exon3	c.G1337A	p.R446H	TGCGGCGCCCCAG	.	13	4	2	0	G|0.901;A|0.099	0	0	0	0	0	A	47000217	G	A	47000217	3	1	26	1	0	0	0	0	1	0	0	0	6751	1087	38	1	1339	1	GPRIN2	10	47000217	Missense_Mutation	SNP	G	TCGA-OR-A5K2-01A-11D-A29I-10		47000217	88534530	82	4301										
CDH23	64072	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr10	73466729	73466729	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0537634408602151	10	0.929330005145667	1.17075910768737	1.92142230026339	0.73817353908424	0.680172297752053	1	0	tgtgtccgaggacgtgccacGcgagttccgggtggtctggc	17	11	1	0	novel		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	CDH23-563	NM_022124	exon25	c.G3029A	p.R1010H	TGCCACGCGAGTT	.	600	136	325	0	.	0	0	0	0	0	A	73466729	G	A	73466729	3	1	26	1	0	0	0	0	1	0	0	0	3114	1087	38	1	3354	1	CDH23	10	73466729	Missense_Mutation	SNP	G	TCGA-OR-A5K2-01A-11D-A29I-10	26466512	73466729	62068018	83	4302										
ZNF503	84858	hgsc.bcm.edu	37	chr10	77159791	77159791	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0537634408602151	10	0.929330005145667	1.17075910768737	1.92142230026339	0.73817353908424	0.680172297752053	1	0	gtcctgggcgtgaatggctgGcaggtggcgctcggtacccg	18	11	0	1	novel		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	ZNF503-91	NM_032772	exon2	c.C657A	p.C219X	TGGCTGGCAGGTG	.	61	4	7	0	.	3	3	0	0	0	T	77159791	G	T	77159791	4	4	26	1	0	0	0	0	0	1	0	0	17988	1195	42	3	1287	3	ZNF503	10	77159791	Nonsense_Mutation	SNP	G	TCGA-OR-A5K2-01A-11D-A29I-10	3693062	77159791	58374956	84	4303										
NEURL	9148	hgsc.bcm.edu	37	chr10	105344756	105344756	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0537634408602151	10	0.929330005145667	1.17075910768737	1.92142230026339	0.73817353908424	0.680172297752053	1	0	ctgcggccggccgacctgccTttcagccctgaggccctggt	13	17	1	1	rs2236209	byfrequency	TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	NEURL-226	NM_004210	exon4	c.T1113C	p.P371P	CCTGCCTTTCAGC	.	3	3	0	0	T|0.455;C|0.545	0	0	0	0	0	C	105344756	T	C	105344756	2	2	26	1	0	0	0	0	0	0	0	1	10374	1596	56	4		4	NEURL	10	105344756	Silent	SNP	T	TCGA-OR-A5K2-01A-11D-A29I-10	28184965	105344756	30189991	85	4304										
PTPRE	5791	broad.mit.edu;bcgsc.ca	37	chr10	129871714	129871714	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0537634408602151	10	0.929330005145667	1.17075910768737	1.92142230026339	0.73817353908424	0.680172297752053	1	0	cacactatcgtgatgctgacGgaggtgcaggagagagagca	15	8	0	4	novel		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	PTPRE-227	NM_006504	exon17	c.G1578A	p.T526T	GCTGACGGAGGTG	.	275	11	249	0	.	5	5	0	0	0	A	129871714	G	A	129871714	2	1	26	1	0	0	0	0	0	0	0	1	12835	1103	39	1		1	PTPRE	10	129871714	Silent	SNP	G	TCGA-OR-A5K2-01A-11D-A29I-10	24526958	129871714	5663033	86	4305										
PWWP2B	170394	hgsc.bcm.edu	37	chr10	134218296	134218296	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0537634408602151	10	0.929330005145667	1.17075910768737	1.92142230026339	0.73817353908424	0.680172297752053	1	0	ttcagccccccgagaccaccCgccccgagccacccccgccc	7	26	1	1	rs10747057	byfrequency	TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	PWWP2B-90	NM_001098637	exon2	c.C292G	p.R98G	ACCACCCGCCCCG	.	6	6	1	1	C|0.431;G|0.569	16	0	16	0	0	G	134218296	C	G	134218296	3	3	26	1	0	0	0	0	1	0	0	0	12881	652	23	2	298	2	PWWP2B	10	134218296	Missense_Mutation	SNP	C	TCGA-OR-A5K2-01A-11D-A29I-10	4346582	134218296	1316451	87	4306										
KNDC1	85442	hgsc.bcm.edu	37	chr10	135000148	135000148	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0537634408602151	10	0.929330005145667	1.17075910768737	1.92142230026339	0.73817353908424	0.680172297752053	1	0	gagagaattccagaaggagcTaggcagctggaaagtgcagc	15	7	0	2	rs3810965	byfrequency	TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	KNDC1-229	NM_152643	exon6	c.T1296C	p.A432A	AGGAGCTAGGCAG	.	9	5	6	1	T|0.607;C|0.393	6	6	0	0	0	C	135000148	T	C	135000148	2	2	26	1	0	0	0	0	0	0	0	1	8447	1509	53	4		4	KNDC1	10	135000148	Silent	SNP	T	TCGA-OR-A5K2-01A-11D-A29I-10	781852	135000148	534599	88	4307										
MUC2	4583	hgsc.bcm.edu	37	chr11	1093014	1093014	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0537634408602151	10	0.929330005145667	1.17075910768737	1.92142230026339	0.73817353908424	0.680172297752053	1	0	accacgacacccatcaccacCaccactacggtgaccccaac	4	21	1	1	novel		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	MUC2-90	NM_002457	exon30	c.C4833G	p.T1611T	CACCACCACCACT	.	148	11	106	2	.	0	0	0	0	0	G	1093014	C	G	1093014	2	3	26	1	0	0	0	0	0	0	0	1	10003	581	21	3		3	MUC2	11	1093014	Silent	SNP	C	TCGA-OR-A5K2-01A-11D-A29I-10		1093014	133913502	89	4308										
MUC5B	727897	hgsc.bcm.edu;bcgsc.ca	37	chr11	1253980	1253980	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0537634408602151	10	0.929330005145667	1.17075910768737	1.92142230026339	0.73817353908424	0.680172297752053	1	0	caagggcgtacagctcagcgActggagggacggcgtctgca	16	11	2	0	rs202127660		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	.	NM_002458	exon17	c.A2045G	p.D682G	TCAGCGACTGGAG	.	159	13	55	0	.	0	0	0	0	0	G	1253980	A	G	1253980	3	3	26	1	0	0	0	0	1	0	0	0	10007	275	10	4	2120	4	MUC5B	11	1253980	Missense_Mutation	SNP	A	TCGA-OR-A5K2-01A-11D-A29I-10	160966	1253980	133752536	90	4309										
CHRNA10	57053	hgsc.bcm.edu	37	chr11	3688801	3688801	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0537634408602151	10	0.929330005145667	1.17075910768737	1.92142230026339	0.73817353908424	0.680172297752053	1	0	gctggctgcagcgccgcgcgGccgcacatccagttggtgcc	15	16	0	0	novel		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	CHRNA10-91	NM_020402	exon4	c.C556T	p.P186S	CGCGCGGCCGCAC	.	11	5	0	0	.	0	0	0	0	0	A	3688801	G	A	3688801	3	1	26	1	0	0	0	0	1	0	0	0	3388	1203	42	3	804	3	CHRNA10	11	3688801	Missense_Mutation	SNP	G	TCGA-OR-A5K2-01A-11D-A29I-10	2434821	3688801	131317715	91	4310										
DGKZ	8525	hgsc.bcm.edu	37	chr11	46387868	46387868	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0537634408602151	10	0.929330005145667	1.17075910768737	1.92142230026339	0.73817353908424	0.680172297752053	1	0	aggccctggagaggggcagcAgcggcccagcagcgtggggc	20	12	0	1	rs1317826	byfrequency	TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	DGKZ-676	NM_001105540	exon2	c.A62G	p.Q21R	GGCAGCAGCGGCC	.	2	2	0	0	A|0.608;G|0.392	0	0	0	0	0	G	46387868	A	G	46387868	3	3	26	1	0	0	0	0	1	0	0	0	4485	188	7	4	508	4	DGKZ	11	46387868	Missense_Mutation	SNP	A	TCGA-OR-A5K2-01A-11D-A29I-10	42699067	46387868	88618648	92	4311										
FOLH1	2346	bcgsc.ca	37	chr11	49197416	49197416	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0537634408602151	10	0.929330005145667	1.17075910768737	1.92142230026339	0.73817353908424	0.680172297752053	1	0	aaatagtctcttaactgtgtAgaaaagtttccagtaaagcc	7	7	1	1	rs144950409	byfrequency	TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	FOLH1-579	NM_004476	exon8	c.T1014C	p.S338S	CTGTGTAGAAAAG	.	54	5	63	0	A|0.914;G|0.086	0	0	0	0	0	G	49197416	A	G	49197416	2	3	26	1	0	0	0	0	0	0	0	1	5998	407	15	4		4	FOLH1	11	49197416	Silent	SNP	A	TCGA-OR-A5K2-01A-11D-A29I-10	2809548	49197416	85809100	93	4312										
PATL1	219988	hgsc.bcm.edu;bcgsc.ca	37	chr11	59406653	59406653	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0537634408602151	10	0.929330005145667	1.17075910768737	1.92142230026339	0.73817353908424	0.680172297752053	1	0	gcagaagttctcgtgttgccAtgaacatcacctccgtcctg	9	13	2	2	novel		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	PATL1-1	NM_152716	exon18	c.T2159C	p.M720T	GTTGCCATGAACA	.	67	4	68	0	.	7	7	0	0	0	G	59406653	A	G	59406653	3	3	26	1	0	0	0	0	1	0	0	0	11504	217	8	4	161	4	PATL1	11	59406653	Missense_Mutation	SNP	A	TCGA-OR-A5K2-01A-11D-A29I-10	10209237	59406653	75599863	94	4313										
KAT5	10524	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr11	65479768	65479768	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0537634408602151	10	0.929330005145667	1.17075910768737	1.92142230026339	0.73817353908424	0.680172297752053	1	0	gtggtgagtccggtgcccggGgcggggcggagggagccagg	24	9	0	1	novel		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	KAT5-90	NM_182710	exon1	c.G30A	p.G10G	GCCCGGGGCGGGG	.	82	32	28	0	.	2	1	1	0	0	A	65479768	G	A	65479768	2	1	26	1	0	0	0	0	0	0	0	1	8004	1219	43	3		3	KAT5	11	65479768	Silent	SNP	G	TCGA-OR-A5K2-01A-11D-A29I-10	6073115	65479768	69526748	95	4314										
CHRDL2	25884	bcgsc.ca	37	chr11	74413872	74413872	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0537634408602151	10	0.929330005145667	1.17075910768737	1.92142230026339	0.73817353908424	0.680172297752053	1	0	ccagaggtagatctccaccaAgtccgaggcctcgtgttcca	10	14	1	2	rs34528207	byfrequency	TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	CHRDL2-90	NM_015424	exon9	c.T1087C	p.L363L	CCACCAAGTCCGA	.	123	6	83	0	A|0.791;G|0.209	0	0	0	0	0	G	74413872	A	G	74413872	2	3	26	1	0	0	0	0	0	0	0	1	3380	69	3	4		4	CHRDL2	11	74413872	Silent	SNP	A	TCGA-OR-A5K2-01A-11D-A29I-10	8934104	74413872	60592644	96	4315										
CNTN5	53942	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	99942557	99942557	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0537634408602151	10	0.929330005145667	1.17075910768737	1.92142230026339	0.73817353908424	0.680172297752053	1	0	tttacgctagtgctgagctgAagattctaggtatgcagttt	11	6	1	3	novel		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	CNTN5-366	NM_001243270	exon11	c.A1420C	p.K474Q	GAGCTGAAGATTC	.	74	20	75	0	.	0	0	0	0	0	C	99942557	A	C	99942557	3	2	26	1	0	0	0	0	1	0	0	0	3650	247	9	5	1458	5	CNTN5	11	99942557	Missense_Mutation	SNP	A	TCGA-OR-A5K2-01A-11D-A29I-10	25528685	99942557	35063959	97	4316										
TULP3	7289	bcgsc.ca	37	chr12	3046802	3046802	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0537634408602151	10	0.929330005145667	1.17075910768737	1.92142230026339	0.73817353908424	0.680172297752053	1	0	tttcctatcttccaggaaacAaacgtacttggatttaaagg	7	8	1	0	rs33973716	byfrequency	TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	TULP3-226	NM_003324	exon9	c.A930G	p.T310T	GGAAACAAACGTA	.	257	8	219	1	A|0.796;G|0.204	0	0	0	0	0	G	3046802	A	G	3046802	2	3	26	1	0	0	0	0	0	0	0	1	16813	117	5	4		4	TULP3	12	3046802	Silent	SNP	A	TCGA-OR-A5K2-01A-11D-A29I-10		3046802	130805093	98	4317										
IAPP	3375	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	21526316	21526316	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0537634408602151	10	0.929330005145667	1.17075910768737	1.92142230026339	0.73817353908424	0.680172297752053	1	0	tgaagctgcaagtatttctcAttgtgctctctgttgcattg	9	8	2	1	novel		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	IAPP-90	NM_000415	exon2	c.A31C	p.I11L	TTTCTCATTGTGC	.	77	10	56	0	.	0	0	0	0	0	C	21526316	A	C	21526316	3	2	26	1	0	0	0	0	1	0	0	0	7493	217	8	5	33	5	IAPP	12	21526316	Missense_Mutation	SNP	A	TCGA-OR-A5K2-01A-11D-A29I-10	18479514	21526316	112325579	99	4318										
SCN8A	6334	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	52159524	52159524	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0537634408602151	10	0.929330005145667	1.17075910768737	1.92142230026339	0.73817353908424	0.680172297752053	1	0	tcaagattattggaaattcaGtgggtgccctgggcaacctg	12	8	2	1	novel		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	SCN8A-29	NM_014191	exon16	c.G2614T	p.V872L	AATTCAGTGGGTG	.	91	18	60	0	.	0	0	0	0	0	T	52159524	G	T	52159524	3	4	26	1	0	0	0	0	1	0	0	0	13959	1029	36	3	2672	3	SCN8A	12	52159524	Missense_Mutation	SNP	G	TCGA-OR-A5K2-01A-11D-A29I-10	30633208	52159524	81692371	100	4319										
PDE1B	5153	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	54967209	54967209	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0537634408602151	10	0.929330005145667	1.17075910768737	1.92142230026339	0.73817353908424	0.680172297752053	1	0	acatcagctctgttttccgaTtgatgcaggatgatgagatg	11	7	2	3	novel		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	PDE1B-92	NM_000924	exon9	c.T907C	p.L303L	TTCCGATTGATGC	.	328	65	191	0	.	3	3	0	0	0	C	54967209	T	C	54967209	2	2	26	1	0	0	0	0	0	0	0	1	11663	1490	52	4		4	PDE1B	12	54967209	Silent	SNP	T	TCGA-OR-A5K2-01A-11D-A29I-10	2807685	54967209	78884686	101	4320										
METTL7B	196410	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	56075903	56075903	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0537634408602151	10	0.929330005145667	1.17075910768737	1.92142230026339	0.73817353908424	0.680172297752053	1	0	gcacctccaatatgagcggtTtgtggtggctcctggagagg	15	9	0	2	novel		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	METTL7B-514	NM_152637	exon1	c.T365A	p.F122Y	AGCGGTTTGTGGT	.	108	12	59	0	.	1	1	0	0	0	A	56075903	T	A	56075903	3	1	26	1	0	0	0	0	1	0	0	0	9534	1841	64	5	367	5	METTL7B	12	56075903	Missense_Mutation	SNP	T	TCGA-OR-A5K2-01A-11D-A29I-10	1108694	56075903	77775992	102	4321										
ATP2B1	490	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	90018032	90018032	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0537634408602151	10	0.929330005145667	1.17075910768737	1.92142230026339	0.73817353908424	0.680172297752053	1	0	actgcgaccactaaaactgtAactccaataatgaagaactt	5	10	0	2	novel		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	ATP2B1-516	NM_001001323	exon8	c.T1272A	p.V424V	AACTGTAACTCCA	.	286	68	183	1	.	0	0	0	0	0	T	90018032	A	T	90018032	2	4	26	1	0	0	0	0	0	0	0	1	1140	349	13	5		5	ATP2B1	12	90018032	Silent	SNP	A	TCGA-OR-A5K2-01A-11D-A29I-10	33942129	90018032	43833863	103	4322										
BTBD11	121551	hgsc.bcm.edu	37	chr12	107713511	107713511	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0537634408602151	10	0.929330005145667	1.17075910768737	1.92142230026339	0.73817353908424	0.680172297752053	1	0	ccggagctgcagtggccctgGgtcaggctcgggctccggcc	17	15	1	0	rs961498	byfrequency	TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	BTBD11-93	NM_001018072	exon1	c.G794C	p.G265A	GCCCTGGGTCAGG	.	4	3	0	0	G|0.588;C|0.412	0	0	0	0	0	C	107713511	G	C	107713511	3	2	26	1	0	0	0	0	1	0	0	0	1542	1232	43	3	796	3	BTBD11	12	107713511	Missense_Mutation	SNP	G	TCGA-OR-A5K2-01A-11D-A29I-10	17695479	107713511	26138384	104	4323										
PITPNM2	57605	hgsc.bcm.edu	37	chr12	123470761	123470761	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0537634408602151	10	0.929330005145667	1.17075910768737	1.92142230026339	0.73817353908424	0.680172297752053	1	0	gaagcaggtggttccgggagCgcagaaagtcgccctggccg	17	11	0	1	novel		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	PITPNM2-228	NM_020845	exon25	c.G3863A	p.R1288H	CGGGAGCGCAGAA	.	45	26	3	1	.	0	0	0	0	0	T	123470761	C	T	123470761	3	4	26	1	0	0	0	0	1	0	0	0	11980	768	27	1	190	1	PITPNM2	12	123470761	Missense_Mutation	SNP	C	TCGA-OR-A5K2-01A-11D-A29I-10	15757250	123470761	10381134	105	4324										
C12orf65	91574	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	123741386	123741386	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0537634408602151	10	0.929330005145667	1.17075910768737	1.92142230026339	0.73817353908424	0.680172297752053	1	0	cagacaagatcagttgatcaGaacagaaagctagctcggaa	10	8	2	5	novel		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	C12orf65-90	NM_001194995	exon3	c.G309C	p.Q103H	TGATCAGAACAGA	.	98	10	104	0	.	32	28	3	1	0	C	123741386	G	C	123741386	3	2	26	1	0	0	0	0	1	0	0	0	1712	933	33	3	315	3	C12orf65	12	123741386	Missense_Mutation	SNP	G	TCGA-OR-A5K2-01A-11D-A29I-10	270625	123741386	10110509	106	4325										
POLE	5426	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	133249853	133249853	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0537634408602151	10	0.929330005145667	1.17075910768737	1.92142230026339	0.73817353908424	0.680172297752053	1	0	cagcatctgacacagaatacGtggccagagtctgaggagag	13	9	2	5	novel		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	POLE-233	NM_006231	exon14	c.C1370G	p.T457R	GAATACGTGGCCA	.	299	56	176	1	.	0	0	0	0	0	C	133249853	G	C	133249853	3	2	26	1	0	0	0	0	1	0	0	0	12225	1145	40	2	5634	2	POLE	12	133249853	Missense_Mutation	SNP	G	TCGA-OR-A5K2-01A-11D-A29I-10	9508467	133249853	602042	107	4326										
ENOX1	55068	ucsc.edu	37	chr13	43935562	43935562	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0537634408602151	10	0.929330005145667	1.17075910768737	1.92142230026339	0.73817353908424	0.680172297752053	1	0	agtcatcatgttgaggcttgGatcaaagcctgggacacaga	12	8	3	2	novel		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	ENOX1-92	NM_017993	exon6	c.C235A	p.P79T	GGCTTGGATCAAA	.	45	4	25	0	.	0	0	0	0	0	T	43935562	G	T	43935562	3	4	26	1	0	0	0	0	1	0	0	0	5139	1174	41	3	1744	3	ENOX1	13	43935562	Missense_Mutation	SNP	G	TCGA-OR-A5K2-01A-11D-A29I-10		43935562	71234316	108	4327										
TMTC4	84899	broad.mit.edu	37	chr13	101316489	101316489	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0537634408602151	10	0.929330005145667	1.17075910768737	1.92142230026339	0.73817353908424	0.680172297752053	1	0	gcttacctgaaagtcaggacGgtgagaggccggtaggactt	15	8	1	2	novel		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	TMTC4-155	NM_032813	exon4	c.C321T	p.T107T	CAGGACGGTGAGA	.	72	3	74	0	.	1	1	0	0	0	A	101316489	G	A	101316489	2	1	26	1	0	0	0	0	0	0	0	1	16300	1103	39	1		1	TMTC4	13	101316489	Silent	SNP	G	TCGA-OR-A5K2-01A-11D-A29I-10	57380927	101316489	13853389	109	4328										
ING1	3621	hgsc.bcm.edu	37	chr13	111368316	111368316	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0537634408602151	10	0.929330005145667	1.17075910768737	1.92142230026339	0.73817353908424	0.680172297752053	1	0	gacagtttcaggccgcatctCtgctgacccgagggtggggc	15	12	2	1	rs9555726	byfrequency	TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	ING1-515	NM_005537	exon1	c.C526T	p.L176L	GCATCTCTGCTGA	.	4	4	0	0	C|0.372;T|0.628	2	0	2	0	0	T	111368316	C	T	111368316	2	4	26	1	0	0	0	0	0	0	0	1	7756	912	32	3		3	ING1	13	111368316	Silent	SNP	C	TCGA-OR-A5K2-01A-11D-A29I-10	10051827	111368316	3801562	110	4329										
PROZ	8858	broad.mit.edu	37	chr13	113814406	113814406	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0537634408602151	10	0.929330005145667	1.17075910768737	1.92142230026339	0.73817353908424	0.680172297752053	1	0	ctatcttctggaagaactctTcgagggaaacttggaaaaag	10	7	3	1	novel		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	PROZ-90	NM_001256134	exon3	c.T215G	p.F72C	AACTCTTCGAGGG	.	12	2	36	0	.	0	0	0	0	0	G	113814406	T	G	113814406	3	3	26	1	0	0	0	0	1	0	0	0	12594	1783	62	5	155	5	PROZ	13	113814406	Missense_Mutation	SNP	T	TCGA-OR-A5K2-01A-11D-A29I-10	2446090	113814406	1355472	111	4330										
OR4K5	79317	hgsc.bcm.edu	37	chr14	20389714	20389714	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0537634408602151	10	0.929330005145667	1.17075910768737	1.92142230026339	0.73817353908424	0.680172297752053	1	0	gaatttctgaaatgtcactaGtagtgagaacttcctttcat	7	7	3	2	novel		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	OR4K5-70	NM_001005483	exon1	c.G949T	p.V317L	TCACTAGTAGTGA	.	61	4	78	0	.	0	0	0	0	0	T	20389714	G	T	20389714	3	4	26	1	0	0	0	0	1	0	0	0	11102	1029	36	3	951	3	OR4K5	14	20389714	Missense_Mutation	SNP	G	TCGA-OR-A5K2-01A-11D-A29I-10		20389714	86959826	112	4331										
RDH12	145226	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	68191943	68191943	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0537634408602151	10	0.929330005145667	1.17075910768737	1.92142230026339	0.73817353908424	0.680172297752053	1	0	ctatccgacaccaaatctatCcgagcctttgctgagggctt	8	13	1	1	novel		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	RDH12-91	NM_152443	exon5	c.C315T	p.I105I	ATCTATCCGAGCC	.	166	41	144	2	.	0	0	0	0	0	T	68191943	C	T	68191943	2	4	26	1	0	0	0	0	0	0	0	1	13226	845	30	3		3	RDH12	14	68191943	Silent	SNP	C	TCGA-OR-A5K2-01A-11D-A29I-10	47802229	68191943	39157597	113	4332			3	22		2	2	16	N	G_C	9.012188e-05
RDH12	145226	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	68191958	68191958	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0537634408602151	10	0.929330005145667	1.17075910768737	1.92142230026339	0.73817353908424	0.680172297752053	1	0	tctatccgagcctttgctgaGggctttctggcaggtgaggt	14	9	2	2	novel		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	RDH12-91	NM_152443	exon5	c.G330A	p.E110E	TGCTGAGGGCTTT	.	170	40	145	1	.	0	0	0	0	0	A	68191958	G	A	68191958	2	1	26	1	0	0	0	0	0	0	0	1	13226	991	35	3		3	RDH12	14	68191958	Silent	SNP	G	TCGA-OR-A5K2-01A-11D-A29I-10	15	68191958	39157582	114	4333			3	22		2	2	16	N	G_C	9.012188e-05
C14orf159	80017	broad.mit.edu	37	chr14	91633636	91633636	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0537634408602151	10	0.929330005145667	1.17075910768737	1.92142230026339	0.73817353908424	0.680172297752053	1	0	gcttttgaaagattctgccaGgtcaacactggtcctctacc	8	12	3	2	novel		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	C14orf159-92	NM_001102366	exon6	c.G171T	p.Q57H	CTGCCAGGTCAAC	.	117	4	72	0	.	23	23	0	0	0	T	91633636	G	T	91633636	3	4	26	1	0	0	0	0	1	0	0	0	1759	991	35	3	177	3	C14orf159	14	91633636	Missense_Mutation	SNP	G	TCGA-OR-A5K2-01A-11D-A29I-10	23441678	91633636	15715904	115	4334										
TRMT61A	115708	broad.mit.edu	37	chr14	104001019	104001019	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0537634408602151	10	0.929330005145667	1.17075910768737	1.92142230026339	0.73817353908424	0.680172297752053	1	0	ctacaacgtgcgcactgtcaGcctgccaccgcccgacctgg	10	18	1	0	novel		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	TRMT61A-90	NM_152307	exon4	c.G731T	p.S244I	CTGTCAGCCTGCC	.	100	5	29	0	.	1	1	0	0	0	T	104001019	G	T	104001019	3	4	26	1	0	0	0	0	1	0	0	0	16607	971	34	3	741	3	TRMT61A	14	104001019	Missense_Mutation	SNP	G	TCGA-OR-A5K2-01A-11D-A29I-10	12367383	104001019	3348521	116	4335										
AHNAK2	113146	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr14	105413351	105413351	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0537634408602151	10	0.929330005145667	1.17075910768737	1.92142230026339	0.73817353908424	0.680172297752053	1	0	cttgaacttgggcattttgaActtgctgtctttggctgtca	10	8	2	2	novel		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	AHNAK2-47	NM_138420	exon7	c.T8437C	p.F2813L	TTTTGAACTTGCT	.	394	92	254	0	.	0	0	0	0	0	G	105413351	A	G	105413351	3	3	26	1	0	0	0	0	1	0	0	0	415	43	2	4	8954	4	AHNAK2	14	105413351	Missense_Mutation	SNP	A	TCGA-OR-A5K2-01A-11D-A29I-10	1412332	105413351	1936189	117	4336										
APBA2	321	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr15	29346191	29346191	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0537634408602151	10	0.929330005145667	1.17075910768737	1.92142230026339	0.73817353908424	0.680172297752053	1	0	gcccgagagcgaggacatggAgctgcccttggagggctatg	17	10	0	1	novel		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	APBA2-90	NM_005503	exon3	c.A104G	p.E35G	ACATGGAGCTGCC	.	299	61	251	0	.	0	0	0	0	0	G	29346191	A	G	29346191	3	3	26	1	0	0	0	0	1	0	0	0	757	304	11	4	106	4	APBA2	15	29346191	Missense_Mutation	SNP	A	TCGA-OR-A5K2-01A-11D-A29I-10		29346191	73185201	118	4337										
FMN1	342184	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr15	33358778	33358778	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0537634408602151	10	0.929330005145667	1.17075910768737	1.92142230026339	0.73817353908424	0.680172297752053	1	0	tcaaacacagctcttagcgaCtccttctcatgtctcatctt	4	14	5	0	novel		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	FMN1-23	NM_001103184	exon1	c.G1308C	p.E436D	TAGCGACTCCTTC	.	117	32	95	0	.	0	0	0	0	0	G	33358778	C	G	33358778	3	3	26	1	0	0	0	0	1	0	0	0	5968	564	20	3	2350	3	FMN1	15	33358778	Missense_Mutation	SNP	C	TCGA-OR-A5K2-01A-11D-A29I-10	4012587	33358778	69172614	119	4338										
KBTBD13	390594	hgsc.bcm.edu	37	chr15	65369531	65369531	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0537634408602151	10	0.929330005145667	1.17075910768737	1.92142230026339	0.73817353908424	0.680172297752053	1	0	gacgtgttccacagtgccgcGctcttcatctgcgacggcga	12	14	3	0	rs2946642	byfrequency	TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	.	NM_001101362	exon1	c.G378T	p.A126A	TGCCGCGCTCTTC	.	5	5	0	0	G|0.479;T|0.521	0	0	0	0	0	T	65369531	G	T	65369531	2	4	26	1	0	0	0	0	0	0	0	1	8013	1074	38	2		2	KBTBD13	15	65369531	Silent	SNP	G	TCGA-OR-A5K2-01A-11D-A29I-10	32010753	65369531	37161861	120	4339										
ACAN	176	hgsc.bcm.edu	37	chr15	89400097	89400097	+	Missense_Mutation	SNP	T	T	G													0.0537634408602151	10	0.929330005145667	1.17075910768737	1.92142230026339	0.73817353908424	0.680172297752053	1	0	actactgcccctggagtagaTgagatcagtgggcttccttc					novel		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	ACAN-25	NM_001135	exon12	c.T4281G	p.D1427E	AGTAGATGAGATC	.	38	3	41	0	.	0	0	0	0	0	G	89400097	T	G	89400097	3	3	26	1	0	0	0	0	1	0	0	0	117	1461	51	5	4323	5	ACAN	15	89400097	Missense_Mutation	SNP	T	TCGA-OR-A5K2-01A-11D-A29I-10	24030566	89400097	13131295	121	4340	34	2								
ACAN	176	hgsc.bcm.edu	37	chr15	89400100	89400100	+	Missense_Mutation	SNP	G	G	C													0.0537634408602151	10	0.929330005145667	1.17075910768737	1.92142230026339	0.73817353908424	0.680172297752053	1	0	actgcccctggagtagatgaGatcagtgggcttccttctgg					novel		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	ACAN-25	NM_001135	exon12	c.G4284C	p.E1428D	AGATGAGATCAGT	.	38	3	40	0	.	0	0	0	0	0	C	89400100	G	C	89400100	3	2	26	1	0	0	0	0	1	0	0	0	117	933	33	3	4326	3	ACAN	15	89400100	Missense_Mutation	SNP	G	TCGA-OR-A5K2-01A-11D-A29I-10	3	89400100	13131292	122	4341	34	2								
ARRDC4	91947	hgsc.bcm.edu	37	chr15	98504326	98504326	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0537634408602151	10	0.929330005145667	1.17075910768737	1.92142230026339	0.73817353908424	0.680172297752053	1	0	gcccccgcgcctcggccagcAccgcggccctggctgtcttc	12	21	1	0	rs12101554	byfrequency	TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	ARRDC4-90	NM_183376	exon1	c.A235G	p.T79A	GCCAGCACCGCGG	.	5	5	0	0	A|0.263;G|0.737	0	0	0	0	0	G	98504326	A	G	98504326	3	3	26	1	0	0	0	0	1	0	0	0	986	159	6	4	237	4	ARRDC4	15	98504326	Missense_Mutation	SNP	A	TCGA-OR-A5K2-01A-11D-A29I-10	9104226	98504326	4027066	123	4342										
TPSD1	23430	hgsc.bcm.edu	37	chr16	1306346	1306347	+	Missense_Mutation	DNP	CG	CG	GC													0.0537634408602151	10	0.929330005145667	1.17075910768737	1.92142230026339	0.73817353908424	0.680172297752053	1	0	gctgcccgtcctggcgagccCggcctacgtggcccctggtg					novel		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	CG	CG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	TPSD1-90	NM_012217	exon1	c.G66C	p.P22R	GAGCCCGGCCTAC	.	123	0	15	0	.	0	0	0	0	0	GC	1306347	CG	GC	1306346	3	3	26	1	0	0	0	0	1	0	0	0	16463	652	23	2	67	2	TPSD1	16	1306346	Missense_Mutation	DNP	CG	TCGA-OR-A5K2-01A-11D-A29I-10		1306346	89048407	124	4343										
PKD1	5310	broad.mit.edu	37	chr16	2140477	2140477	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0537634408602151	10	0.929330005145667	1.17075910768737	1.92142230026339	0.73817353908424	0.680172297752053	1	0	ccagagccccacacacagcaGgggtgacaggtgccaggact	13	14	0	2	rs199674888		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	PKD1-91	NM_001009944	exon45	c.C12253T	p.L4085L	ACAGCAGGGGTGA	.	109	4	95	0	G|0.999;A|0.000	18	18	0	0	0	A	2140477	G	A	2140477	2	1	26	1	0	0	0	0	0	0	0	1	11992	991	35	3		3	PKD1	16	2140477	Silent	SNP	G	TCGA-OR-A5K2-01A-11D-A29I-10	834131	2140477	88214276	125	4344										
PKD1	5310	hgsc.bcm.edu	37	chr16	2167874	2167874	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0537634408602151	10	0.929330005145667	1.17075910768737	1.92142230026339	0.73817353908424	0.680172297752053	1	0	cggttctggatgctgaggtcGaggctctcgtcactctgcac	13	12	4	1	rs35842		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	PKD1-91	NM_000296	exon5	c.C1119T	p.L373L	GAGGTCGAGGCTC	.	14	6	7	2	A|1.000;|0.000	4	4	0	0	0	A	2167874	G	A	2167874	2	1	26	1	0	0	0	0	0	0	0	1	11992	1045	37	1		1	PKD1	16	2167874	Silent	SNP	G	TCGA-OR-A5K2-01A-11D-A29I-10	27397	2167874	88186879	126	4345										
C16orf90	646174	broad.mit.edu	37	chr16	3544636	3544636	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0537634408602151	10	0.929330005145667	1.17075910768737	1.92142230026339	0.73817353908424	0.680172297752053	1	0	agggcccaggctgtgccctcAggctgtggcaggcagccccc	15	16	1	0	novel		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	.	NM_001080524	exon2	c.T288G	p.P96P	GCCCTCAGGCTGT	.	78	3	51	1	.	0	0	0	0	0	C	3544636	A	C	3544636	2	2	26	1	0	0	0	0	0	0	0	1	1847	175	7	5		5	C16orf90	16	3544636	Silent	SNP	A	TCGA-OR-A5K2-01A-11D-A29I-10	1376762	3544636	86810117	127	4346										
TRAP1	10131	broad.mit.edu	37	chr16	3722703	3722703	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0537634408602151	10	0.929330005145667	1.17075910768737	1.92142230026339	0.73817353908424	0.680172297752053	1	0	ggactctgagcagcgtacctCggatgaagcgcagccacttg	13	12	1	2	rs148180859	byfrequency	TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	TRAP1-226	NM_016292	exon10	c.G1163A	p.R388Q	GTACCTCGGATGA	.	142	5	82	1	C|1.000;T|0.000	0	0	0	0	0	T	3722703	C	T	3722703	3	4	26	1	0	0	0	0	1	0	0	0	16493	884	31	1	987	1	TRAP1	16	3722703	Missense_Mutation	SNP	C	TCGA-OR-A5K2-01A-11D-A29I-10	178067	3722703	86632050	128	4347										
DNAH3	55567	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr16	21060895	21060895	+	Frame_Shift_Del	DEL	T	T	-													0.0537634408602151	10	0.929330005145667	1.17075910768737	1.92142230026339	0.73817353908424	0.680172297752053	1	0	tagaggcagagttacctcgaTcctgttgaactcatcaaagc					novel		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	DNAH3-167	NM_017539	exon31	c.4456delA	p.I1486fs	CCTCGATCCTGTT	.	96	15	85	0	.	0	0	0	0	0	-	21060895	T	-	21060895	7	5	26	1	0	1	0	1	0	0	0	0	4614	1435	50	0	8021	0	DNAH3	16	21060895	Frame_Shift_Del	DEL	T	TCGA-OR-A5K2-01A-11D-A29I-10	17338192	21060895	69293858	129	4348										
SEZ6L2	26470	hgsc.bcm.edu	37	chr16	29908433	29908433	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0537634408602151	10	0.929330005145667	1.17075910768737	1.92142230026339	0.73817353908424	0.680172297752053	1	0	gggtggctagcgtggggtccCgatcagatcctgggacagtg	18	9	1	1	rs11649499	byfrequency	TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	SEZ6L2-92	NM_001243332	exon3	c.G221C	p.R74P	GGGTCCCGATCAG	.	8	8	0	0	C|0.218;G|0.782	0	0	0	0	0	G	29908433	C	G	29908433	3	3	26	1	0	0	0	0	1	0	0	0	14179	652	23	2	2614	2	SEZ6L2	16	29908433	Missense_Mutation	SNP	C	TCGA-OR-A5K2-01A-11D-A29I-10	8847538	29908433	60446320	130	4349										
PKD1L2	114780	bcgsc.ca	37	chr16	81199553	81199553	+	RNA	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0537634408602151	10	0.929330005145667	1.17075910768737	1.92142230026339	0.73817353908424	0.680172297752053	1	0	ctccatgactcgaagcagccGcagcactgtggcaatctgaa	10	13	1	2	novel		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	PKD1L2-92	.	.	.	.	GCAGCCGCAGCAC	.	50	4	49	0	.	0	0	0	0	0	T	81199553	G	T	81199553	1	4	26	0	1	0	0	0	0	0	0	0	11994	1086	38	2		2	PKD1L2	16	81199553	RNA	SNP	G	TCGA-OR-A5K2-01A-11D-A29I-10	51291120	81199553	9155200	131	4350										
MINK1	50488	hgsc.bcm.edu	37	chr17	4793052	4793052	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0537634408602151	10	0.929330005145667	1.17075910768737	1.92142230026339	0.73817353908424	0.680172297752053	1	0	gagcggcggcaggcggagcgCgagcaggtagagcgccgcac	20	12	0	1	rs2277681		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	MINK1-943	NM_170663	exon13	c.C1341T	p.R447R	GGAGCGCGAGCAG	.	34	31	1	1	C|0.925;T|0.075	1	0	1	0	0	T	4793052	C	T	4793052	2	4	26	1	0	0	0	0	0	0	0	1	9615	755	27	1		1	MINK1	17	4793052	Silent	SNP	C	TCGA-OR-A5K2-01A-11D-A29I-10		4793052	76402158	132	4351										
C17orf59	54785	ucsc.edu	37	chr17	8092694	8092694	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0537634408602151	10	0.929330005145667	1.17075910768737	1.92142230026339	0.73817353908424	0.680172297752053	1	0	cgcagcacctcggggtcgatTgggggaatggccggtgtggg	20	9	0	0	rs8531	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	C17orf59-90	NM_017622	exon1	c.A765C	p.P255P	GTCGATTGGGGGA	.	46	18	11	0	T|0.356;G|0.644	8	6	2	0	0	G	8092694	T	G	8092694	2	3	26	1	0	0	0	0	0	0	0	1	1872	1799	63	5		5	C17orf59	17	8092694	Silent	SNP	T	TCGA-OR-A5K2-01A-11D-A29I-10	3299642	8092694	73102516	133	4352										
SUPT6H	6830	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	27022538	27022538	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.0537634408602151	10	0.929330005145667	1.17075910768737	1.92142230026339	0.73817353908424	0.680172297752053	1	0	cagaccacaagcaggaggagGacatgaagcggaagcagcag	15	9	0	2	novel		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	SUPT6H-93	NM_003170	exon29	c.G3943C	p.D1315H	GAGGAGGACATGA	.	194	73	237	0	.	20	10	10	0	0	C	27022538	G	C	27022538	3	2	26	1	0	0	0	0	1	0	0	0	15437	1174	41	3	4053	3	SUPT6H	17	27022538	Missense_Mutation	SNP	G	TCGA-OR-A5K2-01A-11D-A29I-10	18929844	27022538	54172672	134	4353										
MYO19	80179	ucsc.edu;bcgsc.ca	37	chr17	34854393	34854393	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0537634408602151	10	0.929330005145667	1.17075910768737	1.92142230026339	0.73817353908424	0.680172297752053	1	0	gctctttagcagcaaggcagGccattctgatcttaaaaagc	9	10	3	1	novel		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	MYO19-23	NM_001163735	exon26	c.C2474A	p.A825D	AGGCAGGCCATTC	.	35	4	52	0	.	1	1	0	0	0	T	34854393	G	T	34854393	3	4	26	1	0	0	0	0	1	0	0	0	10095	1203	42	3	446	3	MYO19	17	34854393	Missense_Mutation	SNP	G	TCGA-OR-A5K2-01A-11D-A29I-10	7831855	34854393	46340817	135	4354										
KRT17	3872	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr17	39780504	39780504	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0537634408602151	10	0.929330005145667	1.17075910768737	1.92142230026339	0.73817353908424	0.680172297752053	1	0	tcattgaggttctgcatggtGgccttctcacctccagccag	10	13	3	1	novel		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	KRT17-92	NM_000422	exon1	c.C258A	p.A86A	CATGGTGGCCTTC	.	371	19	385	1	.	0	0	0	0	0	T	39780504	G	T	39780504	2	4	26	1	0	0	0	0	0	0	0	1	8475	1335	47	3		3	KRT17	17	39780504	Silent	SNP	G	TCGA-OR-A5K2-01A-11D-A29I-10	4926111	39780504	41414706	136	4355										
JUP	3728	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr17	39913762	39913762	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0537634408602151	10	0.929330005145667	1.17075910768737	1.92142230026339	0.73817353908424	0.680172297752053	1	0	gttcttgtcctcggagatgcGgaacaggacggcagcagcgt	15	10	1	1	novel		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	JUP-479	NM_021991	exon12	c.C1951T	p.R651C	AGATGCGGAACAG	.	346	30	281	0	.	8	8	0	0	0	A	39913762	G	A	39913762	3	1	26	1	0	0	0	0	1	0	0	0	7993	1116	39	1	298	1	JUP	17	39913762	Missense_Mutation	SNP	G	TCGA-OR-A5K2-01A-11D-A29I-10	133258	39913762	41281448	137	4356										
ASB16	92591	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr17	42255661	42255661	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0537634408602151	10	0.929330005145667	1.17075910768737	1.92142230026339	0.73817353908424	0.680172297752053	1	0	ccgactagctgtgcgcgctcGgttgggaagccgctgccggc	16	14	0	0	rs199556388	alternate_allele	TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	ASB16-227	NM_080863	exon5	c.G1265C	p.R422P	GCGCTCGGTTGGG	.	79	25	30	0	G|0.999;A|0.001	0	0	0	0	0	C	42255661	G	C	42255661	3	2	26	1	0	0	0	0	1	0	0	0	1021	1116	39	2	1283	2	ASB16	17	42255661	Missense_Mutation	SNP	G	TCGA-OR-A5K2-01A-11D-A29I-10	2341899	42255661	38939549	138	4357										
FOXJ1	2302	hgsc.bcm.edu	37	chr17	74133974	74133974	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0537634408602151	10	0.929330005145667	1.17075910768737	1.92142230026339	0.73817353908424	0.680172297752053	1	0	tgctgggcctcggtattcacCgtcagcggcccggcccgggg	16	15	2	0	rs894542	byfrequency	TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	FOXJ1-227	NM_001454	exon3	c.G726A	p.T242T	ATTCACCGTCAGC	.	5	4	1	0	C|0.925;T|0.075	0	0	0	0	0	T	74133974	C	T	74133974	2	4	26	1	0	0	0	0	0	0	0	1	6030	639	23	1		1	FOXJ1	17	74133974	Silent	SNP	C	TCGA-OR-A5K2-01A-11D-A29I-10	31878313	74133974	7061236	139	4358										
ACTG1	71	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	79478286	79478286	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.0537634408602151	10	0.929330005145667	1.17075910768737	1.92142230026339	0.73817353908424	0.680172297752053	1	0	aatggtgatgacctggccatCgggcagctcgtagctcttct	12	11	2	2	novel		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	ACTG1-91	NM_001614	exon4	c.G730C	p.D244H	GGCCATCGGGCAG	.	366	85	289	0	.	877	659	218	0	0	G	79478286	C	G	79478286	3	3	26	1	0	0	0	0	1	0	0	0	196	884	31	2	409	2	ACTG1	17	79478286	Missense_Mutation	SNP	C	TCGA-OR-A5K2-01A-11D-A29I-10	5344312	79478286	1716924	140	4359										
GRP	2922	hgsc.bcm.edu	37	chr18	56887537	56887537	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0537634408602151	10	0.929330005145667	1.17075910768737	1.92142230026339	0.73817353908424	0.680172297752053	1	0	cgctggtcctgctggcgctgGtcctctgcctggcgccccgg	15	17	1	0	novel		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	GRP-90	NM_001012512	exon1	c.G40T	p.V14F	GCGCTGGTCCTCT	.	8	6	2	1	.	0	0	0	0	0	T	56887537	G	T	56887537	3	4	26	1	0	0	0	0	1	0	0	0	6826	1261	44	3	42	3	GRP	18	56887537	Missense_Mutation	SNP	G	TCGA-OR-A5K2-01A-11D-A29I-10		56887537	21189711	141	4360										
RAX	30062	hgsc.bcm.edu	37	chr18	56936395	56936395	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0537634408602151	10	0.929330005145667	1.17075910768737	1.92142230026339	0.73817353908424	0.680172297752053	1	0	ggcggcggcggcgcgagaggTtgcaggccggggcccaacgg	22	12	0	1	rs7226481		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	RAX-90	NM_013435	exon3	c.A882G	p.Q294Q	GAGAGGTTGCAGG	.	3	3	1	1	T|0.767;C|0.233	0	0	0	0	0	C	56936395	T	C	56936395	2	2	26	1	0	0	0	0	0	0	0	1	13131	1722	60	4		4	RAX	18	56936395	Silent	SNP	T	TCGA-OR-A5K2-01A-11D-A29I-10	48858	56936395	21140853	142	4361										
CBLN2	147381	hgsc.bcm.edu	37	chr18	70209321	70209321	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0537634408602151	10	0.929330005145667	1.17075910768737	1.92142230026339	0.73817353908424	0.680172297752053	1	0	aggcaggatccgcagccgccCggctcgcgcagcgccccccg	14	20	0	0	rs7237888		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	CBLN2-90	NM_182511	exon3	c.G75T	p.P25P	GCCGCCCGGCTCG	.	4	4	0	0	C|0.390;A|0.610	0	0	0	0	0	A	70209321	C	A	70209321	2	1	26	1	0	0	0	0	0	0	0	1	2711	639	23	2		2	CBLN2	18	70209321	Silent	SNP	C	TCGA-OR-A5K2-01A-11D-A29I-10	13272926	70209321	7867927	143	4362										
ABCA7	10347	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr19	1049413	1049413	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0537634408602151	10	0.929330005145667	1.17075910768737	1.92142230026339	0.73817353908424	0.680172297752053	1	0	accgccttcctgggccacaaCggggccggcaagaccaccac	11	18	0	1	novel		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	ABCA7-98	NM_019112	exon18	c.C2529T	p.N843N	CCACAACGGGGCC	.	92	48	69	0	.	0	0	0	0	0	T	1049413	C	T	1049413	2	4	26	1	0	0	0	0	0	0	0	1	37	535	19	1		1	ABCA7	19	1049413	Silent	SNP	C	TCGA-OR-A5K2-01A-11D-A29I-10		1049413	58079570	144	4363										
TCF3	6929	hgsc.bcm.edu	37	chr19	1619333	1619333	+	Silent	SNP	G	G	A													0.0537634408602151	10	0.929330005145667	1.17075910768737	1.92142230026339	0.73817353908424	0.680172297752053	1	0	accaggcctgcgtgccgcccGcccagtgacatggggccggt					rs1140828	byfrequency	TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	TCF3-721	NM_003200	exon15	c.C1308T	p.G436G	CCGCCCGCCCAGT	.	7	7	0	0	G|0.749;A|0.251	1	1	0	0	0	A	1619333	G	A	1619333	2	1	26	1	0	0	0	0	0	0	0	1	15731	1074	38	1		1	TCF3	19	1619333	Silent	SNP	G	TCGA-OR-A5K2-01A-11D-A29I-10	569920	1619333	57509650	145	4364	35	2								
TCF3	6929	hgsc.bcm.edu	37	chr19	1619339	1619339	+	Silent	SNP	T	T	C													0.0537634408602151	10	0.929330005145667	1.17075910768737	1.92142230026339	0.73817353908424	0.680172297752053	1	0	cctgcgtgccgcccgcccagTgacatggggccggtgaaacc					rs8140	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	TCF3-721	NM_003200	exon15	c.A1302G	p.S434S	GCCCAGTGACATG	.	7	7	0	0	T|0.403;C|0.597	2	2	0	0	0	C	1619339	T	C	1619339	2	2	26	1	0	0	0	0	0	0	0	1	15731	1683	59	4		4	TCF3	19	1619339	Silent	SNP	T	TCGA-OR-A5K2-01A-11D-A29I-10	6	1619339	57509644	146	4365	35	2								
SEMA6B	10501	broad.mit.edu	37	chr19	4550277	4550277	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0537634408602151	10	0.929330005145667	1.17075910768737	1.92142230026339	0.73817353908424	0.680172297752053	1	0	catcccgggggctgcgcagcAcccgggcctgggggtgacaa	17	14	0	1	novel		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	SEMA6B-91	NM_032108	exon12	c.T1129G	p.C377G	CGCAGCACCCGGG	.	171	22	113	11	.	0	0	0	0	0	C	4550277	A	C	4550277	3	2	26	1	0	0	0	0	1	0	0	0	14075	159	6	5	1561	5	SEMA6B	19	4550277	Missense_Mutation	SNP	A	TCGA-OR-A5K2-01A-11D-A29I-10	2930938	4550277	54578706	147	4366										
FUT3	2525	bcgsc.ca	37	chr19	5843877	5843877	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0537634408602151	10	0.929330005145667	1.17075910768737	1.92142230026339	0.73817353908424	0.680172297752053	1	0	tgaaggagcgaggccgcagcGtctcccgccagcgaaagtag	15	12	1	1	rs28381969	byfrequency	TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	FUT3-90	NM_001097640	exon3	c.C974T	p.T325M	CGCAGCGTCTCCC	.	1455	392	862	218	G|0.992;A|0.008	0	0	0	0	0	A	5843877	G	A	5843877	3	1	26	1	0	0	0	0	1	0	0	0	6124	1145	40	1	115	1	FUT3	19	5843877	Missense_Mutation	SNP	G	TCGA-OR-A5K2-01A-11D-A29I-10	1293600	5843877	53285106	148	4367										
OR7A5	26659	hgsc.bcm.edu	37	chr19	14938159	14938159	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0537634408602151	10	0.929330005145667	1.17075910768737	1.92142230026339	0.73817353908424	0.680172297752053	1	0	caaatgtattcccagagcccTctttatgtctttattcctca	4	12	3	1	novel		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	OR7A5-90	NM_017506	exon1	c.A895G	p.R299G	GAGCCCTCTTTAT	.	61	5	56	1	.	0	0	0	0	0	C	14938159	T	C	14938159	3	2	26	1	0	0	0	0	1	0	0	0	11245	1550	54	4	68	4	OR7A5	19	14938159	Missense_Mutation	SNP	T	TCGA-OR-A5K2-01A-11D-A29I-10	9094282	14938159	44190824	149	4368										
OR7A5	26659	hgsc.bcm.edu	37	chr19	14938184	14938184	+	Silent	SNP	A	A	G													0.0537634408602151	10	0.929330005145667	1.17075910768737	1.92142230026339	0.73817353908424	0.680172297752053	1	0	atgtctttattcctcagactAtagataaaggggttcagcat					rs200531878		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	OR7A5-90	NM_017506	exon1	c.T870C	p.Y290Y	CAGACTATAGATA	.	87	6	62	1	A|0.999;G|0.001	0	0	0	0	0	G	14938184	A	G	14938184	2	3	26	1	0	0	0	0	0	0	0	1	11245	456	16	4		4	OR7A5	19	14938184	Silent	SNP	A	TCGA-OR-A5K2-01A-11D-A29I-10	25	14938184	44190799	150	4369	36	2								
OR7A5	26659	hgsc.bcm.edu	37	chr19	14938190	14938190	+	Silent	SNP	A	A	G													0.0537634408602151	10	0.929330005145667	1.17075910768737	1.92142230026339	0.73817353908424	0.680172297752053	1	0	ttattcctcagactatagatAaaggggttcagcatgggggt					rs2240561	byfrequency	TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	OR7A5-90	NM_017506	exon1	c.T864C	p.F288F	ATAGATAAAGGGG	.	97	6	70	1	A|0.999;G|0.001	0	0	0	0	0	G	14938190	A	G	14938190	2	3	26	1	0	0	0	0	0	0	0	1	11245	359	13	4		4	OR7A5	19	14938190	Silent	SNP	A	TCGA-OR-A5K2-01A-11D-A29I-10	6	14938190	44190793	151	4370	36	2								
NOTCH3	4854	bcgsc.ca	37	chr19	15303225	15303225	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0537634408602151	10	0.929330005145667	1.17075910768737	1.92142230026339	0.73817353908424	0.680172297752053	1	0	caccggcatgagaatcgggcGgtgccagccaccactgaact	12	14	0	2	rs3815188	byfrequency	TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	NOTCH3-855	NM_000435	exon3	c.C303T	p.T101T	TCGGGCGGTGCCA	.	283	8	170	0	G|0.773;A|0.227	1	1	0	0	0	A	15303225	G	A	15303225	2	1	26	1	0	0	0	0	0	0	0	1	10579	1103	39	1		1	NOTCH3	19	15303225	Silent	SNP	G	TCGA-OR-A5K2-01A-11D-A29I-10	365035	15303225	43825758	152	4371										
PGLS	25796	hgsc.bcm.edu	37	chr19	17622614	17622614	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0537634408602151	10	0.929330005145667	1.17075910768737	1.92142230026339	0.73817353908424	0.680172297752053	1	0	gcgcccgtttcgcgctcggcCtgtcgggcgggagcctcgtc	16	16	0	0	rs11086075	byfrequency	TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	PGLS-90	NM_012088	exon1	c.C133T	p.L45L	CTCGGCCTGTCGG	.	5	4	0	0	C|0.617;T|0.383	18	3	15	0	0	T	17622614	C	T	17622614	2	4	26	1	0	0	0	0	0	0	0	1	11821	680	24	3		3	PGLS	19	17622614	Silent	SNP	C	TCGA-OR-A5K2-01A-11D-A29I-10	2319389	17622614	41506369	153	4372										
ZNF676	163223	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr19	22362756	22362756	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0537634408602151	10	0.929330005145667	1.17075910768737	1.92142230026339	0.73817353908424	0.680172297752053	1	0	cacattcttcacatttttagGgattctctccagtatgaatt	5	9	3	1	novel		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	ZNF676-90	NM_001001411	exon3	c.C1763T	p.P588L	TTTTAGGGATTCT	.	75	7	51	0	.	0	0	0	0	0	A	22362756	G	A	22362756	3	1	26	1	0	0	0	0	1	0	0	0	18120	1232	43	3	7	3	ZNF676	19	22362756	Missense_Mutation	SNP	G	TCGA-OR-A5K2-01A-11D-A29I-10	4740142	22362756	36766227	154	4373										
NUDT19	390916	hgsc.bcm.edu	37	chr19	33183316	33183316	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0537634408602151	10	0.929330005145667	1.17075910768737	1.92142230026339	0.73817353908424	0.680172297752053	1	0	aggacttccccaccaggcccAgcacccgggcctggcctcgc	11	20	0	0	rs8109823		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	NUDT19-22	NM_001105570	exon1	c.A450G	p.P150P	AGGCCCAGCACCC	.	6	2	0	0	A|0.805;G|0.195	0	0	0	0	0	G	33183316	A	G	33183316	2	3	26	1	0	0	0	0	0	0	0	1	10765	175	7	4		4	NUDT19	19	33183316	Silent	SNP	A	TCGA-OR-A5K2-01A-11D-A29I-10	10820560	33183316	25945667	155	4374										
CATSPERG	57828	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	38851407	38851407	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0537634408602151	10	0.929330005145667	1.17075910768737	1.92142230026339	0.73817353908424	0.680172297752053	1	0	acaaccagaagggccagctgGtcaagaggctcgtgcccgtg	14	12	1	2	novel		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	CATSPERG-92	NM_021185	exon16	c.G1804A	p.V602I	CAGCTGGTCAAGA	.	430	42	195	0	.	0	0	0	0	0	A	38851407	G	A	38851407	3	1	26	1	0	0	0	0	1	0	0	0	2698	1261	44	3	1862	3	CATSPERG	19	38851407	Missense_Mutation	SNP	G	TCGA-OR-A5K2-01A-11D-A29I-10	5668091	38851407	20277576	156	4375										
RINL	126432	hgsc.bcm.edu	37	chr19	39360720	39360720	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0537634408602151	10	0.929330005145667	1.17075910768737	1.92142230026339	0.73817353908424	0.680172297752053	1	0	ggctccgcaaggcgggggcgGggctctgcccttccggtccc	17	16	1	0	rs8110393		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	RINL-91	NM_001195833	exon9	c.C1205T	p.P402L	GGGGCGGGGCTCT	.	2	2	1	1	G|0.349;A|0.651	0	0	0	0	0	A	39360720	G	A	39360720	3	1	26	1	0	0	0	0	1	0	0	0	13410	1232	43	3	511	3	RINL	19	39360720	Missense_Mutation	SNP	G	TCGA-OR-A5K2-01A-11D-A29I-10	509313	39360720	19768263	157	4376										
ATP1A3	478	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr19	42486218	42486218	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0537634408602151	10	0.929330005145667	1.17075910768737	1.92142230026339	0.73817353908424	0.680172297752053	1	0	ccaggttcttcaccaggcagTtcttccgggccatgcgcttg	11	14	3	0	novel		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	ATP1A3-92	NM_001256214	exon9	c.A1073C	p.N358T	AGGCAGTTCTTCC	.	546	29	305	0	.	6	5	1	0	0	G	42486218	T	G	42486218	3	3	26	1	0	0	0	0	1	0	0	0	1131	1725	60	5	2067	5	ATP1A3	19	42486218	Missense_Mutation	SNP	T	TCGA-OR-A5K2-01A-11D-A29I-10	3125498	42486218	16642765	158	4377										
ERCC2	2068	hgsc.bcm.edu	37	chr19	45867259	45867259	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0537634408602151	10	0.929330005145667	1.17075910768737	1.92142230026339	0.73817353908424	0.680172297752053	1	0	ctcaccctgcagcacttcgtCgggcagcacggggttggcca	13	15	1	0	rs1799793	byfrequency	TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	ERCC2-848	NM_000400	exon10	c.G934A	p.D312N	CTTCGTCGGGCAG	.	8	4	1	0	C|0.804;T|0.196	7	3	4	0	0	T	45867259	C	T	45867259	3	4	26	1	0	0	0	0	1	0	0	0	5226	884	31	1	1461	1	ERCC2	19	45867259	Missense_Mutation	SNP	C	TCGA-OR-A5K2-01A-11D-A29I-10	3381041	45867259	13261724	159	4378										
ZC3H4	23211	hgsc.bcm.edu;ucsc.edu	37	chr19	47575243	47575243	+	Silent	SNP	T	T	A													0.0537634408602151	10	0.929330005145667	1.17075910768737	1.92142230026339	0.73817353908424	0.680172297752053	1	0	ggcatgtctgcgtgcatgtcTgcgtgcatgtcagggtgcat					rs392366		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	ZC3H4-74	NM_015168	exon13	c.A1938T	p.A646A	CATGTCTGCGTGC	.	91	33	68	0	A|0.000;G|0.000;T|1.000	3	3	0	0	0	A	47575243	T	A	47575243	2	1	26	1	0	0	0	0	0	0	0	1	17607	1567	55	5		5	ZC3H4	19	47575243	Silent	SNP	T	TCGA-OR-A5K2-01A-11D-A29I-10	1707984	47575243	11553740	160	4379	37	2								
ZC3H4	23211	hgsc.bcm.edu;ucsc.edu	37	chr19	47575245	47575245	+	Missense_Mutation	SNP	C	C	G													0.0537634408602151	10	0.929330005145667	1.17075910768737	1.92142230026339	0.73817353908424	0.680172297752053	1	0	catgtctgcgtgcatgtctgCgtgcatgtcagggtgcatgt					rs381976		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	ZC3H4-74	NM_015168	exon13	c.G1936C	p.A646P	TGTCTGCGTGCAT	.	92	31	71	0	C|1.000;|0.000	2	2	0	0	0	G	47575245	C	G	47575245	3	3	26	1	0	0	0	0	1	0	0	0	17607	768	27	2	1987	2	ZC3H4	19	47575245	Missense_Mutation	SNP	C	TCGA-OR-A5K2-01A-11D-A29I-10	2	47575245	11553738	161	4380	37	2								
ZC3H4	23211	hgsc.bcm.edu	37	chr19	47575267	47575267	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0537634408602151	10	0.929330005145667	1.17075910768737	1.92142230026339	0.73817353908424	0.680172297752053	1	0	tgcatgtcagggtgcatgtcCgggtgcatgtcggggtgcat	17	8	1	0	rs200656728	alternate_allele	TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	ZC3H4-74	NM_015168	exon13	c.G1914C	p.P638P	CATGTCCGGGTGC	.	100	16	75	0	C|1.000;A|0.000	1	1	0	0	0	G	47575267	C	G	47575267	2	3	26	1	0	0	0	0	0	0	0	1	17607	639	23	2		2	ZC3H4	19	47575267	Silent	SNP	C	TCGA-OR-A5K2-01A-11D-A29I-10	22	47575267	11553716	162	4381										
GRIN2D	2906	hgsc.bcm.edu	37	chr19	48945880	48945880	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0537634408602151	10	0.929330005145667	1.17075910768737	1.92142230026339	0.73817353908424	0.680172297752053	1	0	atgtacagctgctgcagcgcTgaggccgccccaccgcccgc	12	18	0	1	rs62130268		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	GRIN2D-156	NM_000836	exon13	c.T2697C	p.A899A	CAGCGCTGAGGCC	.	7	7	0	0	T|0.245;C|0.755	0	0	0	0	0	C	48945880	T	C	48945880	2	2	26	1	0	0	0	0	0	0	0	1	6803	1567	55	4		4	GRIN2D	19	48945880	Silent	SNP	T	TCGA-OR-A5K2-01A-11D-A29I-10	1370613	48945880	10183103	163	4382										
RASIP1	54922	hgsc.bcm.edu	37	chr19	49232226	49232226	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0537634408602151	10	0.929330005145667	1.17075910768737	1.92142230026339	0.73817353908424	0.680172297752053	1	0	cttgatgagccgggccaggcGgcccagcagtcgtggcaggt	17	12	0	2	rs2287922		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	RASIP1-228	NM_017805	exon5	c.C1801T	p.R601C	CCAGGCGGCCCAG	.	5	5	1	1	G|0.738;A|0.262	1	0	1	0	0	A	49232226	G	A	49232226	3	1	26	1	0	0	0	0	1	0	0	0	13113	1116	39	1	1122	1	RASIP1	19	49232226	Missense_Mutation	SNP	G	TCGA-OR-A5K2-01A-11D-A29I-10	286346	49232226	9896757	164	4383										
ASPDH	554235	hgsc.bcm.edu	37	chr19	51015404	51015404	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0537634408602151	10	0.929330005145667	1.17075910768737	1.92142230026339	0.73817353908424	0.680172297752053	1	0	tggccgcacccaggaggctcTgccagaaggccgtgacggtg	16	13	1	2	rs12977172	byfrequency	TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	ASPDH-90	NM_001114598	exon6	c.A797G	p.Q266R	AGGCTCTGCCAGA	.	7	5	0	0	T|0.228;C|0.772	0	0	0	0	0	C	51015404	T	C	51015404	3	2	26	1	0	0	0	0	1	0	0	0	1052	1580	55	4	62	4	ASPDH	19	51015404	Missense_Mutation	SNP	T	TCGA-OR-A5K2-01A-11D-A29I-10	1783178	51015404	8113579	165	4384										
KLK10	5655	ucsc.edu	37	chr19	51520487	51520487	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0537634408602151	10	0.929330005145667	1.17075910768737	1.92142230026339	0.73817353908424	0.680172297752053	1	0	cgagccgcgcgcgcacggggAgccataggcttcggggtcca	17	14	0	0	rs3745535	byfrequency	TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	KLK10-650	NM_145888	exon3	c.T148G	p.S50A	ACGGGGAGCCATA	.	140	20	15	0	A|0.266;C|0.734	0	0	0	0	0	C	51520487	A	C	51520487	3	2	26	1	0	0	0	0	1	0	0	0	8419	304	11	5	698	5	KLK10	19	51520487	Missense_Mutation	SNP	A	TCGA-OR-A5K2-01A-11D-A29I-10	505083	51520487	7608496	166	4385										
KLK12	43849	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	51532678	51532678	+	Silent	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0537634408602151	10	0.929330005145667	1.17075910768737	1.92142230026339	0.73817353908424	0.680172297752053	1	0	caggacaccagaccttgaagGactcccccacacaccagggg	10	16	0	2	novel		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	KLK12-227	NM_019598	exon6	c.C627A	p.V209V	TTGAAGGACTCCC	.	83	39	71	0	.	0	0	0	0	0	T	51532678	G	T	51532678	2	4	26	1	0	0	0	0	0	0	0	1	8421	1161	41	3		3	KLK12	19	51532678	Silent	SNP	G	TCGA-OR-A5K2-01A-11D-A29I-10	12191	51532678	7596305	167	4386										
ZNF765	91661	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	53912284	53912284	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0537634408602151	10	0.929330005145667	1.17075910768737	1.92142230026339	0.73817353908424	0.680172297752053	1	0	agacttcatactggacagaaAccttacaaatgtgaagattg	8	7	1	4	novel		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	ZNF765-69	NM_001040185	exon4	c.A1476G	p.K492K	ACAGAAACCTTAC	.	166	33	126	0	.	0	0	0	0	0	G	53912284	A	G	53912284	2	3	26	1	0	0	0	0	0	0	0	1	18176	40	2	4		4	ZNF765	19	53912284	Silent	SNP	A	TCGA-OR-A5K2-01A-11D-A29I-10	2379606	53912284	5216699	168	4387										
SIRPB2	284759	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr20	1456854	1456854	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0537634408602151	10	0.929330005145667	1.17075910768737	1.92142230026339	0.73817353908424	0.680172297752053	1	0	gctaaggtgttcatggctccTgctgggcctgtggtcttgac	14	10	2	1	novel		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	SIRPB2-226	NM_001122962	exon5	c.A987T	p.A329A	GGCTCCTGCTGGG	.	215	61	154	0	.	0	0	0	0	0	A	1456854	T	A	1456854	2	1	26	1	0	0	0	0	0	0	0	1	14369	1567	55	5		5	SIRPB2	20	1456854	Silent	SNP	T	TCGA-OR-A5K2-01A-11D-A29I-10		1456854	61568666	169	4388										
SLC4A11	83959	bcgsc.ca	37	chr20	3211402	3211402	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0537634408602151	10	0.929330005145667	1.17075910768737	1.92142230026339	0.73817353908424	0.680172297752053	1	0	gatgtagagcgccaggggcgCggtggtcagcagaatcacca	16	10	2	2	novel		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	SLC4A11-91	NM_001174090	exon11	c.G1387A	p.A463T	GGGGCGCGGTGGT	.	155	30	102	2	.	0	0	0	0	0	T	3211402	C	T	3211402	3	4	26	1	0	0	0	0	1	0	0	0	14687	768	27	1	1409	1	SLC4A11	20	3211402	Missense_Mutation	SNP	C	TCGA-OR-A5K2-01A-11D-A29I-10	1754548	3211402	59814118	170	4389										
ACTR5	79913	hgsc.bcm.edu	37	chr20	37377139	37377139	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0537634408602151	10	0.929330005145667	1.17075910768737	1.92142230026339	0.73817353908424	0.680172297752053	1	0	aagatggcggcgaacgtgttCccgttccgcgacgcccgtgc	14	14	0	1	rs2254105	byfrequency	TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	ACTR5-90	NM_024855	exon1	c.C18T	p.F6F	CGTGTTCCCGTTC	.	6	4	2	1	C|0.769;T|0.231	0	0	0	0	0	T	37377139	C	T	37377139	2	4	26	1	0	0	0	0	0	0	0	1	215	854	30	3		3	ACTR5	20	37377139	Silent	SNP	C	TCGA-OR-A5K2-01A-11D-A29I-10	34165737	37377139	25648381	171	4390										
SLC9A8	23315	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr20	48494522	48494523	+	Frame_Shift_Del	DEL	AT	AT	-													0.0537634408602151	10	0.929330005145667	1.17075910768737	1.92142230026339	0.73817353908424	0.680172297752053	1	0	ctttggtttgtttcagaaacAtgtgtgtttgcatttcttgg					novel		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	AT	AT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	SLC9A8-91	NM_001260491	exon12	c.1128_1129del	p.376_377del	AGAAACATGTGTG	.	70	13	82	0	.	0	0	0	0	0	-	48494523	AT	-	48494522	7	5	26	1	0	1	0	1	0	0	0	0	14755	204	8	0	1126	0	SLC9A8	20	48494522	Frame_Shift_Del	DEL	AT	TCGA-OR-A5K2-01A-11D-A29I-10	11117383	48494522	14530998	172	4391										
POTEH	23784	hgsc.bcm.edu	37	chr22	16287622	16287622	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0537634408602151	10	0.929330005145667	1.17075910768737	1.92142230026339	0.73817353908424	0.680172297752053	1	0	ctgagtgtcttcatagcagaAtcgtcgtggtctccagaagt	11	9	3	3	rs200785274	byfrequency	TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	POTEH-1	NM_001136213	exon1	c.T264C	p.D88D	AGCAGAATCGTCG	.	42	14	24	2	A|0.957;G|0.044	0	0	0	0	0	G	16287622	A	G	16287622	2	3	26	1	0	0	0	0	0	0	0	1	12296	98	4	4		4	POTEH	22	16287622	Silent	SNP	A	TCGA-OR-A5K2-01A-11D-A29I-10		16287622	35016944	173	4392										
MICAL3	57553	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr22	18293575	18293575	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0537634408602151	10	0.929330005145667	1.17075910768737	1.92142230026339	0.73817353908424	0.680172297752053	1	0	gttcctcctccgtgtaggttCttggctggagagaacaagag	13	9	1	2	novel		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	MICAL3-68	NM_015241	exon28	c.G5450A	p.R1817K	TAGGTTCTTGGCT	.	264	76	164	0	.	0	0	0	0	0	T	18293575	C	T	18293575	3	4	26	1	0	0	0	0	1	0	0	0	9599	913	32	3	578	3	MICAL3	22	18293575	Missense_Mutation	SNP	C	TCGA-OR-A5K2-01A-11D-A29I-10	2005953	18293575	33010991	174	4393										
MICAL3	57553	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr22	18304242	18304242	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0537634408602151	10	0.929330005145667	1.17075910768737	1.92142230026339	0.73817353908424	0.680172297752053	1	0	acagaagagctgattcctggGgagaccggatggggctggtg	18	7	0	4	novel		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	MICAL3-68	NM_015241	exon25	c.C3482T	p.P1161L	TCCTGGGGAGACC	.	59	14	57	0	.	2	0	2	0	0	A	18304242	G	A	18304242	3	1	26	1	0	0	0	0	1	0	0	0	9599	1232	43	3	2558	3	MICAL3	22	18304242	Missense_Mutation	SNP	G	TCGA-OR-A5K2-01A-11D-A29I-10	10667	18304242	33000324	175	4394										
PI4KA	5297	hgsc.bcm.edu;bcgsc.ca	37	chr22	21150496	21150496	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0537634408602151	10	0.929330005145667	1.17075910768737	1.92142230026339	0.73817353908424	0.680172297752053	1	0	cttcccctccagccccagctGcacaaacaactccaacaggt	5	19	0	0	novel		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	PI4KA-454	NM_058004	exon18	c.C2215G	p.Q739E	CCAGCTGCACAAA	.	187	14	212	0	.	1	1	0	0	0	C	21150496	G	C	21150496	3	2	26	1	0	0	0	0	1	0	0	0	11902	1328	46	3	4245	3	PI4KA	22	21150496	Missense_Mutation	SNP	G	TCGA-OR-A5K2-01A-11D-A29I-10	2846254	21150496	30154070	176	4395										
PIWIL3	440822	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr22	25115501	25115501	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0537634408602151	10	0.929330005145667	1.17075910768737	1.92142230026339	0.73817353908424	0.680172297752053	1	0	ctggtgaatggactgccccaCgaggtaagccagcttgtggg	15	10	0	1	novel		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	PIWIL3-93	NM_001008496	exon21	c.G2587A	p.V863M	GCCCCACGAGGTA	.	272	90	223	0	.	0	0	0	0	0	T	25115501	C	T	25115501	3	4	26	1	0	0	0	0	1	0	0	0	11988	536	19	1	65	1	PIWIL3	22	25115501	Missense_Mutation	SNP	C	TCGA-OR-A5K2-01A-11D-A29I-10	3965005	25115501	26189065	177	4396										
NEFH	4744	ucsc.edu	37	chr22	29885564	29885564	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0537634408602151	10	0.929330005145667	1.17075910768737	1.92142230026339	0.73817353908424	0.680172297752053	1	0	aagtctccaacgaaggaggaAgcaaagtcccctgagaaggc	12	10	1	1	rs202065964		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	NEFH-90	NM_021076	exon4	c.A1935G	p.E645E	GGAGGAAGCAAAG	.	54	13	142	0	.	3	3	0	0	0	G	29885564	A	G	29885564	2	3	26	1	0	0	0	0	0	0	0	1	10343	69	3	4		4	NEFH	22	29885564	Silent	SNP	A	TCGA-OR-A5K2-01A-11D-A29I-10	4770063	29885564	21419002	178	4397			4	23		6	4	172	N	T_AAGTCCCCAGTGAAGGCAGAAGCA_A	1.774694e-10
NEFH	4744	hgsc.bcm.edu	37	chr22	29885594	29885594	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0537634408602151	10	0.929330005145667	1.17075910768737	1.92142230026339	0.73817353908424	0.680172297752053	1	0	cctgagaaggccaagtccccAgagaaggaagaggccaagtc	13	11	0	3	rs79235463	byfrequency	TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	NEFH-90	NM_021076	exon4	c.A1965T	p.P655P	GTCCCCAGAGAAG	.	96	13	247	0	A|0.500;T|0.500	5	5	0	0	0	T	29885594	A	T	29885594	2	4	26	1	0	0	0	0	0	0	0	1	10343	175	7	5		5	NEFH	22	29885594	Silent	SNP	A	TCGA-OR-A5K2-01A-11D-A29I-10	30	29885594	21418972	179	4398			4	23		6	4	172	N	T_AAGTCCCCAGTGAAGGCAGAAGCA_A	1.774694e-10
NEFH	4744	bcgsc.ca	37	chr22	29885670	29885693	+	In_Frame_Del	DEL	AAGTCCCCAGTGAAGGCAGAAGCA	AAGTCCCCAGTGAAGGCAGAAGCA	-													0.0537634408602151	10	0.929330005145667	1.17075910768737	1.92142230026339	0.73817353908424	0.680172297752053	1	0	caaagtcccctgagaaggccAagtccccagtgaaggcagaa					novel		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	AAGTCCCCAGTGAAGGCAGAAGCA	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	NEFH-90	NM_021076	exon4	c.2041_2064del	p.681_688del	AAGGCCAAGTCCC	.	252	21	463	0	.	0	0	0	0	0	-	29885693	AAGTCCCCAGTGAAGGCAGAAGCA	-	29885670	7	5	26	1	0	1	0	1	0	0	0	0	10343	131	5	0	2055	0	NEFH	22	29885670	In_Frame_Del	DEL	AAGTCCCCAGTGAAGGCAGAAGCA	TCGA-OR-A5K2-01A-11D-A29I-10	76	29885670	21418896	180	4399			4	23		6	4	172	N	T_AAGTCCCCAGTGAAGGCAGAAGCA_A	1.774694e-10
NEFH	4744	bcgsc.ca	37	chr22	29885722	29885722	+	Missense_Mutation	SNP	T	T	A													0.0537634408602151	10	0.929330005145667	1.17075910768737	1.92142230026339	0.73817353908424	0.680172297752053	1	0	tgagaaggccaagtccccagTgaaggaagaagcaaagtccc					novel		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	NEFH-90	NM_021076	exon4	c.T2093A	p.V698E	CCCCAGTGAAGGA	.	205	16	532	1	.	35	35	0	0	0	A	29885722	T	A	29885722	3	1	26	1	0	0	0	0	1	0	0	0	10343	1696	59	5	2107	5	NEFH	22	29885722	Missense_Mutation	SNP	T	TCGA-OR-A5K2-01A-11D-A29I-10	52	29885722	21418844	181	4400	38	3	4	23		6	4	172	N	T_AAGTCCCCAGTGAAGGCAGAAGCA_A	1.774694e-10
NEFH	4744	bcgsc.ca	37	chr22	29885732	29885732	+	Silent	SNP	A	A	G													0.0537634408602151	10	0.929330005145667	1.17075910768737	1.92142230026339	0.73817353908424	0.680172297752053	1	0	aagtccccagtgaaggaagaAgcaaagtcccctgagaaggc					novel		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	NEFH-90	NM_021076	exon4	c.A2103G	p.E701E	GGAAGAAGCAAAG	.	197	12	531	1	.	10	10	0	0	0	G	29885732	A	G	29885732	2	3	26	1	0	0	0	0	0	0	0	1	10343	69	3	4		4	NEFH	22	29885732	Silent	SNP	A	TCGA-OR-A5K2-01A-11D-A29I-10	10	29885732	21418834	182	4401	38	3	4	23		6	4	172	N	T_AAGTCCCCAGTGAAGGCAGAAGCA_A	1.774694e-10
NEFH	4744	bcgsc.ca	37	chr22	29885735	29885735	+	Silent	SNP	A	A	C													0.0537634408602151	10	0.929330005145667	1.17075910768737	1.92142230026339	0.73817353908424	0.680172297752053	1	0	tccccagtgaaggaagaagcAaagtcccctgagaaggccaa					novel		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	NEFH-90	NM_021076	exon4	c.A2106C	p.A702A	AGAAGCAAAGTCC	.	194	15	528	2	.	10	10	0	0	0	C	29885735	A	C	29885735	2	2	26	1	0	0	0	0	0	0	0	1	10343	117	5	5		5	NEFH	22	29885735	Silent	SNP	A	TCGA-OR-A5K2-01A-11D-A29I-10	3	29885735	21418831	183	4402	38	3	4	23		6	4	172	N	T_AAGTCCCCAGTGAAGGCAGAAGCA_A	1.774694e-10
TRIOBP	11078	hgsc.bcm.edu	37	chr22	38122462	38122462	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0537634408602151	10	0.929330005145667	1.17075910768737	1.92142230026339	0.73817353908424	0.680172297752053	1	0	cagcagcgggggccgcacccAcagccctggccgtgcagagg	16	16	0	1	rs739138	byfrequency	TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	TRIOBP-136	NM_001039141	exon7	c.A3899G	p.H1300R	GCACCCACAGCCC	.	7	7	0	0	A|0.354;G|0.646	0	0	0	0	0	G	38122462	A	G	38122462	3	3	26	1	0	0	0	0	1	0	0	0	16591	159	6	4	3917	4	TRIOBP	22	38122462	Missense_Mutation	SNP	A	TCGA-OR-A5K2-01A-11D-A29I-10	8236727	38122462	13182104	184	4403										
ODF3B	440836	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr22	50969456	50969456	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0537634408602151	10	0.929330005145667	1.17075910768737	1.92142230026339	0.73817353908424	0.680172297752053	1	0	ttgccgatgacgcgcggaccCaagagcgagggcaccgtata	14	12	0	2	novel		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	ODF3B-68	NM_001014440	exon5	c.G450C	p.L150F	CGGACCCAAGAGC	.	169	65	127	0	.	4	3	1	0	0	G	50969456	C	G	50969456	3	3	26	1	0	0	0	0	1	0	0	0	10859	593	21	3	323	3	ODF3B	22	50969456	Missense_Mutation	SNP	C	TCGA-OR-A5K2-01A-11D-A29I-10	12846994	50969456	335110	185	4404										
STS	412	broad.mit.edu;bcgsc.ca	37	chrX	7252144	7252144	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0537634408602151	10	0.929330005145667	1.17075910768737	1.92142230026339	0.73817353908424	0.680172297752053	1	0	gctgtgcgctggcaccctcaGaacagtgagtaaacagacct	11	12	1	3	novel		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	STS-130	NM_000351	exon9	c.G1374C	p.Q458H	CCCTCAGAACAGT	.	356	10	204	1	.	0	0	0	0	0	C	7252144	G	C	7252144	3	2	26	1	0	0	0	0	1	0	0	0	15369	933	33	3	1408	3	STS	23	7252144	Missense_Mutation	SNP	G	TCGA-OR-A5K2-01A-11D-A29I-10		7252144	148018416	186	4405										
DCAF8L2	347442	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chrX	27765556	27765556	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0537634408602151	10	0.929330005145667	1.17075910768737	1.92142230026339	0.73817353908424	0.680172297752053	1	0	tttcctcagagacatctgccCtgccccgacctcgctggcag	9	17	2	1	novel		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	DCAF8L2-42	NM_001136533	exon1	c.C544A	p.L182M	TCTGCCCTGCCCC	.	476	29	320	1	.	0	0	0	0	0	A	27765556	C	A	27765556	3	1	26	1	0	0	0	0	1	0	0	0	4284	680	24	3	546	3	DCAF8L2	23	27765556	Missense_Mutation	SNP	C	TCGA-OR-A5K2-01A-11D-A29I-10	20513412	27765556	127505004	187	4406										
GATA1	2623	broad.mit.edu;bcgsc.ca	37	chrX	48652250	48652250	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0537634408602151	10	0.929330005145667	1.17075910768737	1.92142230026339	0.73817353908424	0.680172297752053	1	0	ggtattcagactcgaaaccgCaaggcatctggaaaagggaa	12	8	2	1	novel		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	GATA1-1315	NM_002049	exon6	c.C921T	p.R307R	AAACCGCAAGGCA	.	224	7	173	1	.	0	0	0	0	0	T	48652250	C	T	48652250	2	4	26	1	0	0	0	0	0	0	0	1	6273	697	25	3		3	GATA1	23	48652250	Silent	SNP	C	TCGA-OR-A5K2-01A-11D-A29I-10	20886694	48652250	106618310	188	4407										
DGAT2L6	347516	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	69424885	69424885	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0537634408602151	10	0.929330005145667	1.17075910768737	1.92142230026339	0.73817353908424	0.680172297752053	1	0	acgcactctacatcagtgccCtgcgcaagctctttgaccaa	7	15	3	1	novel		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	DGAT2L6-131	NM_198512	exon7	c.C943A	p.L315M	AGTGCCCTGCGCA	.	264	38	179	1	.	0	0	0	0	0	A	69424885	C	A	69424885	3	1	26	1	0	0	0	0	1	0	0	0	4470	680	24	3	969	3	DGAT2L6	23	69424885	Missense_Mutation	SNP	C	TCGA-OR-A5K2-01A-11D-A29I-10	20772635	69424885	85845675	189	4408										
RPS6KA6	27330	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	83372103	83372103	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0537634408602151	10	0.929330005145667	1.17075910768737	1.92142230026339	0.73817353908424	0.680172297752053	1	0	gattccttttgaataacatcCttagaagactttgtgcttca	6	8	1	3	novel		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	RPS6KA6-615	NM_014496	exon11	c.G914T	p.R305M	AACATCCTTAGAA	.	163	52	179	0	.	0	0	0	0	0	A	83372103	C	A	83372103	3	1	26	1	0	0	0	0	1	0	0	0	13690	681	24	3	1371	3	RPS6KA6	23	83372103	Missense_Mutation	SNP	C	TCGA-OR-A5K2-01A-11D-A29I-10	13947218	83372103	71898457	190	4409										
PLXNB3	5365	hgsc.bcm.edu;mdanderson.org	37	chrX	153032899	153032899	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0537634408602151	10	0.929330005145667	1.17075910768737	1.92142230026339	0.73817353908424	0.680172297752053	1	0	ggtgccacccctggccatccGccagctggccgggtctcagc	13	18	1	0	novel		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	PLXNB3-130	NM_001163257	exon4	c.G686A	p.R229H	CCATCCGCCAGCT	.	45	17	9	0	.	0	0	0	0	0	A	153032899	G	A	153032899	3	1	26	1	0	0	0	0	1	0	0	0	12154	1087	38	1	741	1	PLXNB3	23	153032899	Missense_Mutation	SNP	G	TCGA-OR-A5K2-01A-11D-A29I-10	69660796	153032899	2237661	191	4410										
ARHGAP4	393	broad.mit.edu	37	chrX	153187251	153187251	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0537634408602151	10	0.929330005145667	1.17075910768737	1.92142230026339	0.73817353908424	0.680172297752053	1	0	gcgcagctgctcgctcagctGccagcgcatctctgtggggg	15	14	2	0	novel		TCGA-OR-A5K2-01A-11D-A29I-10	TCGA-OR-A5K2-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66aec7c2-3fce-47b6-939c-a8593e81b426	f1b3d772-79b9-406b-aa04-27a086489524	.	ARHGAP4-227	NM_001666	exon2	c.C79A	p.Q27K	TCAGCTGCCAGCG	.	37	4	12	0	.	0	0	0	0	0	T	153187251	G	T	153187251	3	4	26	1	0	0	0	0	1	0	0	0	885	1328	46	3	2969	3	ARHGAP4	23	153187251	Missense_Mutation	SNP	G	TCGA-OR-A5K2-01A-11D-A29I-10	154352	153187251	2083309	192	4411										
SKI	6497	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr1	2235335	2235335	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	gcccaacgtggccctcgcacCgccggcccagcagaaggttg	13	17	0	1	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	SKI-838	NM_003036	exon4	c.C1268T	p.P423L	TCGCACCGCCGGC	.	95	86	83	0	.	8	2	6	0	0	T	2235335	C	T	2235335	3	4	27	1	0	0	0	0	1	0	0	0	14392	652	23	1	1282	1	SKI	1	2235335	Missense_Mutation	SNP	C	TCGA-OR-A5K4-01A-11D-A29I-10		2235335	247015286	1	4412										
PRDM16	63976	hgsc.bcm.edu	37	chr1	3329263	3329263	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	tatggggaacgcaagctgggCgccggcgaggggctgcccca	18	12	0	0	rs115226069	byfrequency;by1000genomes	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	PRDM16-660	NM_022114	exon9	c.C2502T	p.G834G	GCTGGGCGCCGGC	.	31	28	0	0	C|0.969;T|0.031	0	0	0	0	0	T	3329263	C	T	3329263	2	4	27	1	0	0	0	0	0	0	0	1	12489	755	27	1		1	PRDM16	1	3329263	Silent	SNP	C	TCGA-OR-A5K4-01A-11D-A29I-10	1093928	3329263	245921358	2	4413										
PTCHD2	57540	broad.mit.edu;bcgsc.ca	37	chr1	11589895	11589895	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	cttcaacccctgcgtgaacaCgggctgcgggaagccggcgg	15	14	1	1	rs201439934		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	PTCHD2-209	NM_020780	exon15	c.C2981T	p.T994M	TGAACACGGGCTG	.	145	7	224	0	C|0.999;T|0.001	0	0	0	0	0	T	11589895	C	T	11589895	3	4	27	1	0	0	0	0	1	0	0	0	12765	536	19	1	3035	1	PTCHD2	1	11589895	Missense_Mutation	SNP	C	TCGA-OR-A5K4-01A-11D-A29I-10	8260632	11589895	237660726	3	4414										
FBXO6	26270	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	11728807	11728807	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	gttcacgcacgtgcccgcccGccagctgctgctgaactgcc	11	18	1	1	rs146139993	byfrequency	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	FBXO6-226	NM_018438	exon2	c.G92A	p.R31H	CCGCCCGCCAGCT	.	164	143	201	2	G|1.000;A|0.000	45	31	14	0	0	A	11728807	G	A	11728807	3	1	27	1	0	0	0	0	1	0	0	0	5778	1087	38	1	94	1	FBXO6	1	11728807	Missense_Mutation	SNP	G	TCGA-OR-A5K4-01A-11D-A29I-10	138912	11728807	237521814	4	4415										
MFN2	9927	broad.mit.edu	37	chr1	12069759	12069759	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	aattgaggttcttgactcacTtcagagcaaagcaaagctgc	9	9	3	3	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	MFN2-91	NM_014874	exon18	c.T2180C	p.L727P	ACTCACTTCAGAG	.	93	3	133	0	.	45	45	0	0	0	C	12069759	T	C	12069759	3	2	27	1	0	0	0	0	1	0	0	0	9552	1609	56	4	2242	4	MFN2	1	12069759	Missense_Mutation	SNP	T	TCGA-OR-A5K4-01A-11D-A29I-10	340952	12069759	237180862	5	4416										
CASP9	842	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	15820441	15820441	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	gcccactgctcaaagatgtcGtccagggtctcaacgtacca	9	14	2	1	rs149161953		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	CASP9-1083	NM_001229	exon8	c.C1104T	p.D368D	GATGTCGTCCAGG	.	47	42	49	0	G|0.999;A|0.000	10	1	9	0	0	A	15820441	G	A	15820441	2	1	27	1	0	0	0	0	0	0	0	1	2685	1136	40	1		1	CASP9	1	15820441	Silent	SNP	G	TCGA-OR-A5K4-01A-11D-A29I-10	3750682	15820441	233430180	6	4417										
UBR4	23352	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	19479813	19479813	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	actgattgtagctgttttgcGctttcgaacaggcttcatga	10	8	1	2	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	UBR4-612	NM_020765	exon46	c.C6814T	p.R2272C	TTTTGCGCTTTCG	.	106	99	179	0	.	2	0	2	0	0	A	19479813	G	A	19479813	3	1	27	1	0	0	0	0	1	0	0	0	16942	1087	38	1	8981	1	UBR4	1	19479813	Missense_Mutation	SNP	G	TCGA-OR-A5K4-01A-11D-A29I-10	3659372	19479813	229770808	7	4418										
WNT4	54361	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	22446583	22446583	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	ccacgagccgctggcactgcCggcacttgacgaagcagcac	12	16	0	1	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	WNT4-524	NM_030761	exon5	c.G1016A	p.R339Q	CACTGCCGGCACT	.	85	78	79	0	.	0	0	0	0	0	T	22446583	C	T	22446583	3	4	27	1	0	0	0	0	1	0	0	0	17428	652	23	1	43	1	WNT4	1	22446583	Missense_Mutation	SNP	C	TCGA-OR-A5K4-01A-11D-A29I-10	2966770	22446583	226804038	8	4419										
PIGV	55650	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	27121404	27121404	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	attgcagagggaaatgaaccGccttggtgcttctgggatgt	14	7	1	2	rs147229452		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	PIGV-91	NM_001202554	exon3	c.G879A	p.P293P	TGAACCGCCTTGG	.	181	167	213	0	G|1.000;A|0.000	10	0	9	0	1	A	27121404	G	A	27121404	2	1	27	1	0	0	0	0	0	0	0	1	11930	1074	38	1		1	PIGV	1	27121404	Silent	SNP	G	TCGA-OR-A5K4-01A-11D-A29I-10	4674821	27121404	222129217	9	4420										
WASF2	10163	broad.mit.edu;bcgsc.ca	37	chr1	27736229	27736229	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	tcgctacgggcatcgctcacGgcaggcaaggaggacttggg	16	11	1	0	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	WASF2-228	NM_006990	exon8	c.C1296T	p.A432A	GCTCACGGCAGGC	.	176	7	337	0	.	39	38	1	0	0	A	27736229	G	A	27736229	2	1	27	1	0	0	0	0	0	0	0	1	17291	1103	39	1		1	WASF2	1	27736229	Silent	SNP	G	TCGA-OR-A5K4-01A-11D-A29I-10	614825	27736229	221514392	10	4421										
EIF3I	8668	broad.mit.edu	37	chr1	32694136	32694136	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	tgaatgttaaggagcactccCggcagatcaacgacatccag	10	11	1	2	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	EIF3I-69	NM_003757	exon7	c.C565T	p.R189W	CACTCCCGGCAGA	.	137	4	217	0	.	219	219	0	0	0	T	32694136	C	T	32694136	3	4	27	1	0	0	0	0	1	0	0	0	5032	643	23	1	591	1	EIF3I	1	32694136	Missense_Mutation	SNP	C	TCGA-OR-A5K4-01A-11D-A29I-10	4957907	32694136	216556485	11	4422										
HDAC1	3065	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	32792571	32792571	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	aaacttaataagcagcagacGgacatcgctgtgaattgggc	11	8	0	2	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	HDAC1-659	NM_004964	exon5	c.G387A	p.T129T	GCAGACGGACATC	.	76	68	138	0	.	84	1	83	0	0	A	32792571	G	A	32792571	2	1	27	1	0	0	0	0	0	0	0	1	7025	1103	39	1		1	HDAC1	1	32792571	Silent	SNP	G	TCGA-OR-A5K4-01A-11D-A29I-10	98435	32792571	216458050	12	4423										
SMAP2	64744	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	40872411	40872411	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	gttcctgactttcacagggcCgcgatgggcctcttggaaca	12	12	2	1	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	SMAP2-68	NM_022733	exon2	c.C107T	p.P36L	CAGGGCCGCGATG	.	64	62	81	0	.	0	0	0	0	0	T	40872411	C	T	40872411	3	4	27	1	0	0	0	0	1	0	0	0	14802	652	23	1	113	1	SMAP2	1	40872411	Missense_Mutation	SNP	C	TCGA-OR-A5K4-01A-11D-A29I-10	8079840	40872411	208378210	13	4424										
CDC20	991	bcgsc.ca	37	chr1	43826794	43826794	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	acctttattccatctaggccGtagcatggtgtccctggcag	10	12	1	0	rs1801456	byfrequency	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	CDC20-227	NM_001255	exon9	c.G1081A	p.V361I	TAGGCCGTAGCAT	.	72	6	93	0	G|0.996;A|0.004	0	0	0	0	0	A	43826794	G	A	43826794	3	1	27	1	0	0	0	0	1	0	0	0	3065	1145	40	1	1111	1	CDC20	1	43826794	Missense_Mutation	SNP	G	TCGA-OR-A5K4-01A-11D-A29I-10	2954383	43826794	205423827	14	4425										
PTPRF	5792	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	44057523	44057523	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	ttccaggccgaggtggagtcGgacaccaggatccagctctc	13	13	1	0	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	PTPRF-232	NM_002840	exon10	c.G1572A	p.S524S	GGAGTCGGACACC	.	138	40	254	0	.	3	2	1	0	0	A	44057523	G	A	44057523	2	1	27	1	0	0	0	0	0	0	0	1	12836	1103	39	1		1	PTPRF	1	44057523	Silent	SNP	G	TCGA-OR-A5K4-01A-11D-A29I-10	230729	44057523	205193098	15	4426										
DNTTIP2	30836	broad.mit.edu;bcgsc.ca	37	chr1	94342201	94342201	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	ttaccctgagatgtgttgggCgcagacgtgtatagtttggt	14	6	0	2	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	.	NM_014597	exon2	c.G1290A	p.A430A	GTTGGGCGCAGAC	.	264	10	430	0	.	25	24	1	0	0	T	94342201	C	T	94342201	2	4	27	1	0	0	0	0	0	0	0	1	4693	755	27	1		1	DNTTIP2	1	94342201	Silent	SNP	C	TCGA-OR-A5K4-01A-11D-A29I-10	50284678	94342201	154908420	16	4427										
BCL9	607	bcgsc.ca	37	chr1	147092112	147092112	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	atggttcctagtgggatgaaGggagatgtcaatctaaatgt	13	4	2	2	rs61754125	byfrequency	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	BCL9-707	NM_004326	exon8	c.G2151A	p.K717K	GATGAAGGGAGAT	.	98	6	115	1	G|0.978;A|0.022	12	12	0	0	0	A	147092112	G	A	147092112	2	1	27	1	0	0	0	0	0	0	0	1	1382	991	35	3		3	BCL9	1	147092112	Silent	SNP	G	TCGA-OR-A5K4-01A-11D-A29I-10	52749911	147092112	102158509	17	4428										
OTUD7B	56957	broad.mit.edu	37	chr1	149939226	149939226	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	agcactcactgacctgcctgTtccaaggcaaccagcatgga	9	14	1	1	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	OTUD7B-502	NM_020205	exon4	c.A495G	p.E165E	TGCCTGTTCCAAG	.	114	3	188	0	.	0	0	0	0	0	C	149939226	T	C	149939226	2	2	27	1	0	0	0	0	0	0	0	1	11348	1722	60	4		4	OTUD7B	1	149939226	Silent	SNP	T	TCGA-OR-A5K4-01A-11D-A29I-10	2847114	149939226	99311395	18	4429										
RPTN	126638	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	152128689	152128689	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	gtcttgtctgtccgtctgacCgtagtgggaactctggcctt	12	11	4	1	rs201025925		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	RPTN-68	NM_001122965	exon3	c.G886A	p.G296S	TCTGACCGTAGTG	.	165	142	206	0	C|0.999;T|0.001	0	0	0	0	0	T	152128689	C	T	152128689	3	4	27	1	0	0	0	0	1	0	0	0	13699	652	23	1	1472	1	RPTN	1	152128689	Missense_Mutation	SNP	C	TCGA-OR-A5K4-01A-11D-A29I-10	2189463	152128689	97121932	19	4430										
FLG	2312	broad.mit.edu;bcgsc.ca	37	chr1	152286155	152286155	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	gactgcagatgaagcttgccCgcgcccagtggctgagtgtc	14	12	0	3	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	FLG-106	NM_002016	exon3	c.G1207A	p.G403R	CTTGCCCGCGCCC	.	148	6	186	0	.	0	0	0	0	0	T	152286155	C	T	152286155	3	4	27	1	0	0	0	0	1	0	0	0	5941	652	23	1	10982	1	FLG	1	152286155	Missense_Mutation	SNP	C	TCGA-OR-A5K4-01A-11D-A29I-10	157466	152286155	96964466	20	4431										
CLK2	1196	broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr1	155238573	155238573	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	cctctacactcttggctctcCggctgctgtgctgctgtcgg	11	15	3	0	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	CLK2-333	NM_003993	exon4	c.G410A	p.R137Q	GCTCTCCGGCTGC	.	51	42	68	1	.	4	0	4	0	0	T	155238573	C	T	155238573	3	4	27	1	0	0	0	0	1	0	0	0	3543	652	23	1	1126	1	CLK2	1	155238573	Missense_Mutation	SNP	C	TCGA-OR-A5K4-01A-11D-A29I-10	2952418	155238573	94012048	21	4432										
ASH1L	55870	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	155348172	155348172	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	agaaaggggtttgacatcaaCgtagacatcttgaaaagaaa	10	5	2	5	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	ASH1L-234	NM_018489	exon10	c.G6232A	p.V2078I	CATCAACGTAGAC	.	93	7	138	0	.	0	0	0	0	0	T	155348172	C	T	155348172	3	4	27	1	0	0	0	0	1	0	0	0	1042	536	19	1	2738	1	ASH1L	1	155348172	Missense_Mutation	SNP	C	TCGA-OR-A5K4-01A-11D-A29I-10	109599	155348172	93902449	22	4433										
PEAR1	375033	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	156882744	156882744	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	ctgtggcttacagcagcgggCgcctggacggctccgagtat	15	12	0	0	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	PEAR1-71	NM_001080471	exon18	c.C2392T	p.R798C	AGCGGGCGCCTGG	.	96	90	148	0	.	0	0	0	0	0	T	156882744	C	T	156882744	3	4	27	1	0	0	0	0	1	0	0	0	11741	768	27	1	2458	1	PEAR1	1	156882744	Missense_Mutation	SNP	C	TCGA-OR-A5K4-01A-11D-A29I-10	1534572	156882744	92367877	23	4434										
COPA	1314	broad.mit.edu	37	chr1	160265920	160265920	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	tctaagccatgggtagcagcTgtgagataggccagggactc	14	9	1	1	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	COPA-92	NM_001098398	exon22	c.A2310G	p.T770T	AGCAGCTGTGAGA	.	95	5	133	0	.	38	38	0	0	0	C	160265920	T	C	160265920	2	2	27	1	0	0	0	0	0	0	0	1	3733	1567	55	4		4	COPA	1	160265920	Silent	SNP	T	TCGA-OR-A5K4-01A-11D-A29I-10	3383176	160265920	88984701	24	4435										
POU2F1	5451	ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	167343435	167343435	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	ctgcagtgcagcagcactccGccagccagcagcacagtgct	11	16	0	0	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	POU2F1-579	NM_002697	exon6	c.G493A	p.A165T	CACTCCGCCAGCC	.	152	63	195	1	.	0	0	0	0	0	A	167343435	G	A	167343435	3	1	27	1	0	0	0	0	1	0	0	0	12300	1087	38	1	442	1	POU2F1	1	167343435	Missense_Mutation	SNP	G	TCGA-OR-A5K4-01A-11D-A29I-10	7077515	167343435	81907186	25	4436										
KIFAP3	22920	ucsc.edu;bcgsc.ca	37	chr1	169951997	169951997	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	gagatctgggctgcaaggtcCccaacataatcctgaataaa	9	10	1	2	rs33943686	byfrequency	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	KIFAP3-91	NM_014970	exon14	c.G1518A	p.G506G	AAGGTCCCCAACA	.	47	5	62	0	C|0.728;T|0.272	0	0	0	0	0	T	169951997	C	T	169951997	2	4	27	1	0	0	0	0	0	0	0	1	8332	610	22	3		3	KIFAP3	1	169951997	Silent	SNP	C	TCGA-OR-A5K4-01A-11D-A29I-10	2608562	169951997	79298624	26	4437										
RC3H1	149041	broad.mit.edu	37	chr1	173912683	173912683	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	caggccattttggaggtggcGgtggtgggggctgtgactgg	21	6	0	1	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	RC3H1-92	NM_172071	exon17	c.C3032T	p.P1011L	GGTGGCGGTGGTG	.	114	5	141	0	.	0	0	0	0	0	A	173912683	G	A	173912683	3	1	27	1	0	0	0	0	1	0	0	0	13201	1116	39	1	381	1	RC3H1	1	173912683	Missense_Mutation	SNP	G	TCGA-OR-A5K4-01A-11D-A29I-10	3960686	173912683	75337938	27	4438										
ASTN1	460	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	176833494	176833494	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	ctcacacgtcttcctgaggtCccggctgagctccgcccagt	10	17	2	2	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	ASTN1-319	NM_004319	exon23	c.G3811A	p.D1271N	TGAGGTCCCGGCT	.	74	71	124	1	.	1	0	1	0	0	T	176833494	C	T	176833494	3	4	27	1	0	0	0	0	1	0	0	0	1065	855	30	3	77	3	ASTN1	1	176833494	Missense_Mutation	SNP	C	TCGA-OR-A5K4-01A-11D-A29I-10	2920811	176833494	72417127	28	4439										
ZNF648	127665	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	182025773	182025773	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	gcacgaggcgcgagggctgcGcgaaggccacgccgcagtca	17	14	1	0	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	ZNF648-91	NM_001009992	exon2	c.C1373T	p.A458V	GGCTGCGCGAAGG	.	114	23	66	0	.	0	0	0	0	0	A	182025773	G	A	182025773	3	1	27	1	0	0	0	0	1	0	0	0	18100	1087	38	1	337	1	ZNF648	1	182025773	Missense_Mutation	SNP	G	TCGA-OR-A5K4-01A-11D-A29I-10	5192279	182025773	67224848	29	4440										
HMCN1	83872	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	185956660	185956660	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	aagtggaaatcccaaaccgtCtgtcatctggtccaaggtaa	9	10	3	0	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	HMCN1-113	NM_031935	exon20	c.C3032T	p.S1011F	AACCGTCTGTCAT	.	66	55	93	0	.	0	0	0	0	0	T	185956660	C	T	185956660	3	4	27	1	0	0	0	0	1	0	0	0	7241	913	32	3	3110	3	HMCN1	1	185956660	Missense_Mutation	SNP	C	TCGA-OR-A5K4-01A-11D-A29I-10	3930887	185956660	63293961	30	4441										
CFH	3075	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	chr1	196659281	196659281	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	aaatctatagacgttgcctgCcatcctggctacgctcttcc	7	14	2	1	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	CFH-566	NM_001014975	exon9	c.C1248T	p.C416C	TGCCTGCCATCCT	.	432	151	646	2	.	1	1	0	0	0	T	196659281	C	T	196659281	2	4	27	1	0	0	0	0	0	0	0	1	3289	747	26	3		3	CFH	1	196659281	Silent	SNP	C	TCGA-OR-A5K4-01A-11D-A29I-10	10702621	196659281	52591340	31	4442										
ASPM	259266	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	197060024	197060024	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	gaatttttcctgctttttacGgaggagaaaatggcgcactg	11	7	0	1	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	ASPM-615	NM_018136	exon23	c.C9592T	p.R3198C	TTTTACGGAGGAG	.	47	15	40	0	.	2	0	2	0	0	A	197060024	G	A	197060024	3	1	27	1	0	0	0	0	1	0	0	0	1057	1116	39	1	865	1	ASPM	1	197060024	Missense_Mutation	SNP	G	TCGA-OR-A5K4-01A-11D-A29I-10	400743	197060024	52190597	32	4443										
KCNH1	3756	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	210856743	210856743	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	atcctgagtatctcagagagCtgtttctcaatattggtcat	8	8	3	2	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	KCNH1-94	NM_172362	exon11	c.G2850A	p.Q950Q	AGAGAGCTGTTTC	.	87	33	161	0	.	0	0	0	0	0	T	210856743	C	T	210856743	2	4	27	1	0	0	0	0	0	0	0	1	8052	796	28	3		3	KCNH1	1	210856743	Silent	SNP	C	TCGA-OR-A5K4-01A-11D-A29I-10	13796719	210856743	38393878	33	4444										
USH2A	7399	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	216373375	216373375	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	ttgtaagtgacagctacactCcttgttgaaccatgcacatt	7	10	0	2	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	USH2A-115	NM_206933	exon17	c.G3405C	p.R1135S	TACACTCCTTGTT	.	110	104	154	0	.	0	0	0	0	0	G	216373375	C	G	216373375	3	3	27	1	0	0	0	0	1	0	0	0	17074	854	30	3	12441	3	USH2A	1	216373375	Missense_Mutation	SNP	C	TCGA-OR-A5K4-01A-11D-A29I-10	5516632	216373375	32877246	34	4445										
DISP1	84976	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	223116579	223116579	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	tcacctgtgtatcagactacGtgctgtcttcagccctctcc	7	15	5	1	rs143316612	byfrequency	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	DISP1-68	NM_032890	exon4	c.G414A	p.T138T	GACTACGTGCTGT	.	213	186	290	1	G|0.998;A|0.002	3	0	3	0	0	A	223116579	G	A	223116579	2	1	27	1	0	0	0	0	0	0	0	1	4550	1132	40	1		1	DISP1	1	223116579	Silent	SNP	G	TCGA-OR-A5K4-01A-11D-A29I-10	6743204	223116579	26134042	35	4446										
OBSCN	84033	bcgsc.ca;mdanderson.org	37	chr1	228503565	228503565	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	cagccaagaacacggtggtgCgggggctggagaatgtggag	19	7	0	2	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	OBSCN-403	NM_001271223	exon61	c.C15901T	p.R5301W	GTGGTGCGGGGGC	.	64	53	45	1	.	2	0	2	0	0	T	228503565	C	T	228503565	3	4	27	1	0	0	0	0	1	0	0	0	10841	759	27	1	13224	1	OBSCN	1	228503565	Missense_Mutation	SNP	C	TCGA-OR-A5K4-01A-11D-A29I-10	5386986	228503565	20747056	36	4447										
OBSCN	84033	hgsc.bcm.edu	37	chr1	228504669	228504669	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	cgcgacgccgtggcctctgcGcggctcaccgtgctgggtgg	17	15	2	0	rs61825302	bycluster;byfrequency;by1000genomes	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	OBSCN-403	NM_001271223	exon62	c.G16416A	p.A5472A	CTCTGCGCGGCTC	.	30	29	4	0	G|0.841;A|0.159	0	0	0	0	0	A	228504669	G	A	228504669	2	1	27	1	0	0	0	0	0	0	0	1	10841	1074	38	1		1	OBSCN	1	228504669	Silent	SNP	G	TCGA-OR-A5K4-01A-11D-A29I-10	1104	228504669	20745952	37	4448										
RNF144A	9781	broad.mit.edu	37	chr2	7164508	7164508	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	tttctcccacagtgctgcttTcaaaatggaagaagatgacg	9	9	2	3	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	RNF144A-227	NM_014746	exon7	c.T518C	p.F173S	CTGCTTTCAAAAT	.	68	3	113	0	.	1	1	0	0	0	C	7164508	T	C	7164508	3	2	27	1	0	0	0	0	1	0	0	0	13480	1783	62	4	536	4	RNF144A	2	7164508	Missense_Mutation	SNP	T	TCGA-OR-A5K4-01A-11D-A29I-10		7164508	236034865	38	4449										
MPV17	4358	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	27535925	27535925	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	tctggtgttcctgcagacccCgcctctccaccagctgctgt	9	17	2	1	rs140992482		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	MPV17-90	NM_002437	exon3	c.G122A	p.R41Q	AGACCCCGCCTCT	.	175	154	247	1	C|1.000;T|0.000	15	5	10	0	0	T	27535925	C	T	27535925	3	4	27	1	0	0	0	0	1	0	0	0	9773	652	23	1	432	1	MPV17	2	27535925	Missense_Mutation	SNP	C	TCGA-OR-A5K4-01A-11D-A29I-10	20371417	27535925	215663448	39	4450										
CLIP4	79745	bcgsc.ca	37	chr2	29366643	29366643	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	atgccgttagagatggctgaCgccgcagccactgctaagga	13	11	0	2	rs115153920	byfrequency	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	CLIP4-91	NM_024692	exon7	c.C717T	p.D239D	GGCTGACGCCGCA	.	175	67	271	4	C|0.995;T|0.005	7	4	3	0	0	T	29366643	C	T	29366643	2	4	27	1	0	0	0	0	0	0	0	1	3541	535	19	1		1	CLIP4	2	29366643	Silent	SNP	C	TCGA-OR-A5K4-01A-11D-A29I-10	1830718	29366643	213832730	40	4451										
MSH6	2956	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	48026605	48026605	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	ctccagaaatgatggaggcaCgatgtagaaagatggcacat	12	7	0	4	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	MSH6-3014	NM_000179	exon4	c.C1483T	p.R495X	GAGGCACGATGTA	.	165	151	258	0	.	2	0	2	0	0	T	48026605	C	T	48026605	4	4	27	1	0	0	0	0	0	1	0	0	9902	528	19	1	1497	1	MSH6	2	48026605	Nonsense_Mutation	SNP	C	TCGA-OR-A5K4-01A-11D-A29I-10	18659962	48026605	195172768	41	4452										
PSME4	23198	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr2	54159045	54159045	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	caaagcctgggctgcttctaGactaccggttttgctaaaca	9	11	1	1	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	PSME4-275	NM_014614	exon10	c.C1243A	p.L415I	CTTCTAGACTACC	.	164	147	261	2	.	1	0	1	0	0	T	54159045	G	T	54159045	3	4	27	1	0	0	0	0	1	0	0	0	12741	933	33	3	4436	3	PSME4	2	54159045	Missense_Mutation	SNP	G	TCGA-OR-A5K4-01A-11D-A29I-10	6132440	54159045	189040328	42	4453										
GMCL1	64395	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	70096886	70096886	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	acaggttttaacttcggcttCgacctacttgtaacttacac	6	11	0	0	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	GMCL1-93	NM_178439	exon12	c.C1254T	p.F418F	CGGCTTCGACCTA	.	70	66	84	1	.	12	0	12	0	0	T	70096886	C	T	70096886	2	4	27	1	0	0	0	0	0	0	0	1	6505	883	31	1		1	GMCL1	2	70096886	Silent	SNP	C	TCGA-OR-A5K4-01A-11D-A29I-10	15937841	70096886	173102487	43	4454										
PCBP1	5093	broad.mit.edu	37	chr2	70315210	70315210	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	ggccacccagtgcggctcccTgattgggaaaggcgggtgta	16	11	0	1	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	PCBP1-226	NM_006196	exon1	c.T335A	p.L112Q	GCTCCCTGATTGG	.	89	5	101	0	.	253	253	0	0	0	A	70315210	T	A	70315210	3	1	27	1	0	0	0	0	1	0	0	0	11529	1580	55	5	337	5	PCBP1	2	70315210	Missense_Mutation	SNP	T	TCGA-OR-A5K4-01A-11D-A29I-10	218324	70315210	172884163	44	4455										
DNAH6	1768	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	84899458	84899458	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	tttatttccctaggagcaccGggaaacaaacgaattgtgat	9	8	0	1	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	DNAH6-69	NM_001370	exon40	c.G6462A	p.P2154P	AGCACCGGGAAAC	.	45	37	51	0	.	0	0	0	0	0	A	84899458	G	A	84899458	2	1	27	1	0	0	0	0	0	0	0	1	4616	1103	39	1		1	DNAH6	2	84899458	Silent	SNP	G	TCGA-OR-A5K4-01A-11D-A29I-10	14584248	84899458	158299915	45	4456										
MRPS5	64969	ucsc.edu	37	chr2	95766639	95766639	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	gtgaactgctctgttctttgCctgaaaggaaaatgtttttc	9	7	2	2	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	MRPS5-92	NM_031902	exon9	c.G811A	p.A271T	TCTTTGCCTGAAA	.	43	4	61	0	.	0	0	0	0	0	T	95766639	C	T	95766639	3	4	27	1	0	0	0	0	1	0	0	0	9874	753	26	3	497	3	MRPS5	2	95766639	Missense_Mutation	SNP	C	TCGA-OR-A5K4-01A-11D-A29I-10	10867181	95766639	147432734	46	4457										
INPP4A	3631	broad.mit.edu	37	chr2	99155995	99155995	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	tgtcatcccacctcagtgttCggtggtgccatctgccgcat	10	14	3	0	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	INPP4A-227	NM_004027	exon10	c.C675T	p.F225F	AGTGTTCGGTGGT	.	119	5	189	0	.	0	0	0	0	0	T	99155995	C	T	99155995	2	4	27	1	0	0	0	0	0	0	0	1	7773	883	31	1		1	INPP4A	2	99155995	Silent	SNP	C	TCGA-OR-A5K4-01A-11D-A29I-10	3389356	99155995	144043378	47	4458										
BCL2L11	10018	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	111921764	111921764	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	acccacgaatggttatcttaCgactgttacgttacattgtc	7	10	1	0	rs138706378	byfrequency;alternate_allele	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	BCL2L11-1083	NM_138621	exon4	c.C553T	p.R185X	ATCTTACGACTGT	.	113	99	131	0	C|0.999;G|0.001	2	0	2	0	0	T	111921764	C	T	111921764	4	4	27	1	0	0	0	0	0	1	0	0	1370	528	19	1	692	1	BCL2L11	2	111921764	Nonsense_Mutation	SNP	C	TCGA-OR-A5K4-01A-11D-A29I-10	12765769	111921764	131277609	48	4459										
IL1RN	3557	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	113885278	113885278	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	ccattcagagacgatctgccGaccctctgggagaaaatcca	9	13	3	2	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	IL1RN-92	NM_173841	exon3	c.G86A	p.R29Q	TCTGCCGACCCTC	.	57	50	62	1	.	0	0	0	0	0	A	113885278	G	A	113885278	3	1	27	1	0	0	0	0	1	0	0	0	7686	1058	37	1	160	1	IL1RN	2	113885278	Missense_Mutation	SNP	G	TCGA-OR-A5K4-01A-11D-A29I-10	1963514	113885278	129314095	49	4460										
NCKAP5	344148	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	133541906	133541906	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	agagtcaccaggccagatgaAgggagtagtgtggtggcttc	16	7	1	3	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	.	NM_207363	exon14	c.T2478A	p.P826P	AGATGAAGGGAGT	.	116	111	157	1	.	1	0	1	0	0	T	133541906	A	T	133541906	2	4	27	1	0	0	0	0	0	0	0	1	10252	59	3	5		5	NCKAP5	2	133541906	Silent	SNP	A	TCGA-OR-A5K4-01A-11D-A29I-10	19656628	133541906	109657467	50	4461										
DLX1	1745	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	172951487	172951487	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	gatttattccagtttgcagtTgcaggctttgaaccggaggt	12	7	0	1	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	DLX1-90	NM_178120	exon2	c.T419C	p.L140S	TGCAGTTGCAGGC	.	107	97	149	0	.	0	0	0	0	0	C	172951487	T	C	172951487	3	2	27	1	0	0	0	0	1	0	0	0	4581	1821	63	4	425	4	DLX1	2	172951487	Missense_Mutation	SNP	T	TCGA-OR-A5K4-01A-11D-A29I-10	39409581	172951487	70247886	51	4462										
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	179592882	179592882	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	tgcatcatctcctgctacatTtgacactttgcatgtgtaat	6	10	2	1	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	TTN-636	NM_001267550	exon67	c.A19669G	p.N6557D	CTACATTTGACAC	.	98	92	119	0	.	0	0	0	0	0	C	179592882	T	C	179592882	3	2	27	1	0	0	0	0	1	0	0	0	16773	1841	64	4	85044	4	TTN	2	179592882	Missense_Mutation	SNP	T	TCGA-OR-A5K4-01A-11D-A29I-10	6641395	179592882	63606491	52	4463										
COL5A2	1290	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	189948711	189948711	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	atgttgagtataaacttaccGgagatcctgcaaatcccact	7	10	0	2	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	COL5A2-92	NM_000393	exon12	c.C851T	p.P284L	CTTACCGGAGATC	.	35	34	42	1	.	0	0	0	0	0	A	189948711	G	A	189948711	3	1	27	1	0	0	0	0	1	0	0	0	3703	1130	39	1	3820	1	COL5A2	2	189948711	Missense_Mutation	SNP	G	TCGA-OR-A5K4-01A-11D-A29I-10	10355829	189948711	53250662	53	4464										
MFSD6	54842	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	191301884	191301884	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	tcgtcttcatcgtcttcggcGttctcatgaccatggccttg	9	13	4	1	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	MFSD6-92	NM_017694	exon3	c.G1129A	p.V377I	TTCGGCGTTCTCA	.	159	131	221	0	.	28	2	26	0	0	A	191301884	G	A	191301884	3	1	27	1	0	0	0	0	1	0	0	0	9563	1145	40	1	1131	1	MFSD6	2	191301884	Missense_Mutation	SNP	G	TCGA-OR-A5K4-01A-11D-A29I-10	1353173	191301884	51897489	54	4465										
CNTN6	27255	broad.mit.edu	37	chr3	1415404	1415404	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	ttcaaatatttactattcagActcggacaccattttctgtg	5	9	3	1	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	CNTN6-345	NM_014461	exon15	c.A1903G	p.T635A	ATTCAGACTCGGA	.	201	5	244	0	.	0	0	0	0	0	G	1415404	A	G	1415404	3	3	27	1	0	0	0	0	1	0	0	0	3651	275	10	4	1957	4	CNTN6	3	1415404	Missense_Mutation	SNP	A	TCGA-OR-A5K4-01A-11D-A29I-10		1415404	196607026	55	4466										
NUP210	23225	bcgsc.ca	37	chr3	13368892	13368892	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	acgctgactgtgcggacaacGcaggtgttgttggtggggcc	17	9	0	1	rs2271509	byfrequency	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	NUP210-256	NM_024923	exon32	c.C4332T	p.C1444C	GACAACGCAGGTG	.	209	7	265	2	G|0.541;A|0.459	9	9	0	0	0	A	13368892	G	A	13368892	2	1	27	1	0	0	0	0	0	0	0	1	10789	1079	38	1		1	NUP210	3	13368892	Silent	SNP	G	TCGA-OR-A5K4-01A-11D-A29I-10	11953488	13368892	184653538	56	4467										
C3orf20	84077	ucsc.edu;bcgsc.ca	37	chr3	14724408	14724408	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	tgacccttcagtgcctacccCgtccgacatcttgggcctgg	10	16	2	1	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	C3orf20-94	NM_032137	exon3	c.C188T	p.P63L	CTACCCCGTCCGA	.	130	124	187	2	.	0	0	0	0	0	T	14724408	C	T	14724408	3	4	27	1	0	0	0	0	1	0	0	0	2219	652	23	1	190	1	C3orf20	3	14724408	Missense_Mutation	SNP	C	TCGA-OR-A5K4-01A-11D-A29I-10	1355516	14724408	183298022	57	4468										
SUSD5	26032	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	33216542	33216542	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	gcaggatggtgtgtgggaacGaaggcgggtctccacacggc	18	9	1	0	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	SUSD5-24	NM_015551	exon4	c.C434T	p.S145L	GGGAACGAAGGCG	.	119	103	168	0	.	1	0	1	0	0	A	33216542	G	A	33216542	3	1	27	1	0	0	0	0	1	0	0	0	15448	1059	37	1	1463	1	SUSD5	3	33216542	Missense_Mutation	SNP	G	TCGA-OR-A5K4-01A-11D-A29I-10	18492134	33216542	164805888	58	4469										
TRANK1	9881	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	36873092	36873092	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	cctcctcataatagaggccaCggactatggaccctttggtg	10	12	1	1	rs200132397		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	TRANK1-24	NM_014831	exon21	c.G7850A	p.R2617H	AGGCCACGGACTA	.	177	161	248	2	.	4	0	4	0	0	T	36873092	C	T	36873092	3	4	27	1	0	0	0	0	1	0	0	0	16492	536	19	1	939	1	TRANK1	3	36873092	Missense_Mutation	SNP	C	TCGA-OR-A5K4-01A-11D-A29I-10	3656550	36873092	161149338	59	4470										
DLEC1	9940	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	38080909	38080909	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	gcttcgcagcccggccccgcCgcctcacgcagcttgcgctg	12	20	1	0	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	DLEC1-161	NM_007337	exon1	c.C193T	p.R65C	CCCCGCCGCCTCA	.	168	156	118	0	.	0	0	0	0	0	T	38080909	C	T	38080909	3	4	27	1	0	0	0	0	1	0	0	0	4563	652	23	1	195	1	DLEC1	3	38080909	Missense_Mutation	SNP	C	TCGA-OR-A5K4-01A-11D-A29I-10	1207817	38080909	159941521	60	4471										
RPL14	9045	bcgsc.ca	37	chr3	40503520	40503520	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	aagcacctggtactaagggtActgctgctgctgctgctgct	12	11	0	0	rs61749576	byfrequency	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	RPL14-90	NM_003973	exon6	c.A445G	p.T149A	AAGGGTACTGCTG	.	58	7	64	0	A|0.962;G|0.038	389	388	0	0	1	G	40503520	A	G	40503520	3	3	27	1	0	0	0	0	1	0	0	0	13596	391	14	4	474	4	RPL14	3	40503520	Missense_Mutation	SNP	A	TCGA-OR-A5K4-01A-11D-A29I-10	2422611	40503520	157518910	61	4472										
PTPN23	25930	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	47453643	47453643	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	ccaggaggtgcacgcacattAcctgcatcagcggccgctgc	12	15	1	0	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	PTPN23-227	NM_015466	exon22	c.A4133G	p.Y1378C	CACATTACCTGCA	.	113	102	139	0	.	22	3	19	0	0	G	47453643	A	G	47453643	3	3	27	1	0	0	0	0	1	0	0	0	12823	391	14	4	4219	4	PTPN23	3	47453643	Missense_Mutation	SNP	A	TCGA-OR-A5K4-01A-11D-A29I-10	6950123	47453643	150568787	62	4473										
AMT	275	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	49459642	49459642	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	ggcagactccaacccgcaaaCgccaccattttcccgccgtg	8	18	0	1	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	AMT-91	NM_001164712	exon2	c.G153A	p.A51A	CGCAAACGCCACC	.	128	112	238	1	.	1	0	1	0	0	T	49459642	C	T	49459642	2	4	27	1	0	0	0	0	0	0	0	1	589	523	19	1		1	AMT	3	49459642	Silent	SNP	C	TCGA-OR-A5K4-01A-11D-A29I-10	2005999	49459642	148562788	63	4474										
SEMA3F	6405	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	50211681	50211681	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	cagggcgagtgtgggaacttCgtcaggctcatccagccctg	14	12	2	0	rs200273983		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	SEMA3F-279	NM_004186	exon5	c.C354T	p.F118F	GAACTTCGTCAGG	.	240	210	367	1	C|0.999;T|0.001	6	5	1	0	0	T	50211681	C	T	50211681	2	4	27	1	0	0	0	0	0	0	0	1	14064	883	31	1		1	SEMA3F	3	50211681	Silent	SNP	C	TCGA-OR-A5K4-01A-11D-A29I-10	752039	50211681	147810749	64	4475										
DNAH1	25981	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	52425313	52425313	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	gaacgtgggcgaggagctagAcccagccctggagccagtgc	16	12	0	1	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	DNAH1-67	NM_015512	exon62	c.A9860G	p.D3287G	AGCTAGACCCAGC	.	145	131	253	1	.	6	0	6	0	0	G	52425313	A	G	52425313	3	3	27	1	0	0	0	0	1	0	0	0	4608	275	10	4	10102	4	DNAH1	3	52425313	Missense_Mutation	SNP	A	TCGA-OR-A5K4-01A-11D-A29I-10	2213632	52425313	145597117	65	4476										
NISCH	11188	broad.mit.edu	37	chr3	52522397	52522397	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	cgcagctgtacccagcctcgGggcgcctttgctgatggcca	13	15	0	1	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	NISCH-93	NM_007184	exon16	c.G2889T	p.R963R	GCCTCGGGGCGCC	.	112	4	161	0	.	33	33	0	0	0	T	52522397	G	T	52522397	2	4	27	1	0	0	0	0	0	0	0	1	10461	1219	43	3		3	NISCH	3	52522397	Silent	SNP	G	TCGA-OR-A5K4-01A-11D-A29I-10	97084	52522397	145500033	66	4477										
STAB1	23166	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	52536666	52536666	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	agtgtgcagctgtgtgcacgGagtgtgcaaccatgggccac	15	10	0	0	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	STAB1-139	NM_015136	exon6	c.G506A	p.G169E	TGCACGGAGTGTG	.	115	99	145	0	.	0	0	0	0	0	A	52536666	G	A	52536666	3	1	27	1	0	0	0	0	1	0	0	0	15274	1174	41	3	528	3	STAB1	3	52536666	Missense_Mutation	SNP	G	TCGA-OR-A5K4-01A-11D-A29I-10	14269	52536666	145485764	67	4478										
STAB1	23166	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	52553340	52553340	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	gcgaccatgaggccgtgaacGgcatcctgcacttcattgac	11	13	1	3	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	STAB1-139	NM_015136	exon49	c.G5095A	p.G1699S	GTGAACGGCATCC	.	161	152	243	0	.	4	4	0	0	0	A	52553340	G	A	52553340	3	1	27	1	0	0	0	0	1	0	0	0	15274	1116	39	1	5289	1	STAB1	3	52553340	Missense_Mutation	SNP	G	TCGA-OR-A5K4-01A-11D-A29I-10	16674	52553340	145469090	68	4479										
ITIH1	3697	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	52820426	52820426	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	gcgcctctgggcctacctcaCcatccaggagctgctggcca	11	17	2	0	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	ITIH1-93	NM_002215	exon13	c.C1709T	p.T570I	ACCTCACCATCCA	.	184	177	300	0	.	0	0	0	0	0	T	52820426	C	T	52820426	3	4	27	1	0	0	0	0	1	0	0	0	7924	507	18	3	1759	3	ITIH1	3	52820426	Missense_Mutation	SNP	C	TCGA-OR-A5K4-01A-11D-A29I-10	267086	52820426	145202004	69	4480										
PRICKLE2	166336	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr3	64085464	64085464	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	gcgaactgactctgcgctccGgaactgcatggacgagttaa	12	11	1	1	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	PRICKLE2-95	NM_198859	exon8	c.C1798T	p.R600W	CGCTCCGGAACTG	.	138	123	228	0	.	1	0	1	0	0	A	64085464	G	A	64085464	3	1	27	1	0	0	0	0	1	0	0	0	12519	1115	39	1	740	1	PRICKLE2	3	64085464	Missense_Mutation	SNP	G	TCGA-OR-A5K4-01A-11D-A29I-10	11265038	64085464	133936966	70	4481										
FILIP1L	11259	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	99643213	99643213	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	taaaagctgtcccaggattcGtctgtaagattctttatgtt	8	7	2	1	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	FILIP1L-45	NM_182909	exon4	c.C466T	p.R156X	GGATTCGTCTGTA	.	95	81	124	0	.	0	0	0	0	0	A	99643213	G	A	99643213	4	1	27	1	0	0	0	0	0	1	0	0	5914	1153	40	1	2974	1	FILIP1L	3	99643213	Nonsense_Mutation	SNP	G	TCGA-OR-A5K4-01A-11D-A29I-10	35557749	99643213	98379217	71	4482										
MYH15	22989	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	108174589	108174589	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	agttttctggttaccttagtGattccaaatcggtactgggt	10	7	1	1	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	MYH15-73	NM_014981	exon21	c.C2316G	p.I772M	CTTAGTGATTCCA	.	90	84	122	0	.	0	0	0	0	0	C	108174589	G	C	108174589	3	2	27	1	0	0	0	0	1	0	0	0	10062	1280	45	3	3612	3	MYH15	3	108174589	Missense_Mutation	SNP	G	TCGA-OR-A5K4-01A-11D-A29I-10	8531376	108174589	89847841	72	4483										
ZBTB20	26137	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	114070578	114070578	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	ccagcacgcagcggtgtgcgCgcagcatgctcccgtggatg	15	14	0	0	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	ZBTB20-95	NM_001164342	exon4	c.G347A	p.R116H	TGTGCGCGCAGCA	.	166	149	236	0	.	0	0	0	0	0	T	114070578	C	T	114070578	3	4	27	1	0	0	0	0	1	0	0	0	17566	768	27	1	1886	1	ZBTB20	3	114070578	Missense_Mutation	SNP	C	TCGA-OR-A5K4-01A-11D-A29I-10	5895989	114070578	83951852	73	4484										
SLC12A8	84561	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	124854609	124854609	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	ctgtagcagttcgggtgaatAtccaatgaaaccatgttctg	10	8	1	2	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	SLC12A8-22	NM_024628	exon6	c.T640A	p.Y214N	GTGAATATCCAAT	.	87	79	140	0	.	1	0	1	0	0	T	124854609	A	T	124854609	3	4	27	1	0	0	0	0	1	0	0	0	14424	449	16	5	1540	5	SLC12A8	3	124854609	Missense_Mutation	SNP	A	TCGA-OR-A5K4-01A-11D-A29I-10	10784031	124854609	73167821	74	4485										
COL6A5	256076	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	130124438	130124438	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	gctccttttcttagggagtaCgaggagacacaggaccccaa	11	11	1	1	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	.	NM_153264	exon14	c.C4288T	p.R1430X	GGAGTACGAGGAG	.	159	138	309	1	.	0	0	0	0	0	T	130124438	C	T	130124438	4	4	27	1	0	0	0	0	0	1	0	0	3708	528	19	1	4338	1	COL6A5	3	130124438	Nonsense_Mutation	SNP	C	TCGA-OR-A5K4-01A-11D-A29I-10	5269829	130124438	67897992	75	4486										
ARMC8	25852	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	137942520	137942520	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	gtttattgaagcttgcctccGatgcctgcgtaccatcttca	8	12	2	1	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	ARMC8-90	NM_001267041	exon5	c.G380A	p.R127Q	GCCTCCGATGCCT	.	51	39	73	1	.	9	0	9	0	0	A	137942520	G	A	137942520	3	1	27	1	0	0	0	0	1	0	0	0	958	1058	37	1	356	1	ARMC8	3	137942520	Missense_Mutation	SNP	G	TCGA-OR-A5K4-01A-11D-A29I-10	7818082	137942520	60079910	76	4487										
PLS1	5357	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	142408558	142408558	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	gcagatgtggtttcaggcaaTcctaaacttaatttagcttt	8	7	1	1	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	PLS1-91	NM_001172312	exon10	c.T1080A	p.N360K	AGGCAATCCTAAA	.	61	57	90	0	.	0	0	0	0	0	A	142408558	T	A	142408558	3	1	27	1	0	0	0	0	1	0	0	0	12136	1432	50	5	1114	5	PLS1	3	142408558	Missense_Mutation	SNP	T	TCGA-OR-A5K4-01A-11D-A29I-10	4466038	142408558	55613872	77	4488										
TNIK	23043	ucsc.edu;bcgsc.ca	37	chr3	170789054	170789054	+	Nonsense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	tacggtttaggagcccaagcAtatatttccacagcattctt	7	10	1	0	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	TNIK-550	NM_015028	exon29	c.T3507A	p.Y1169X	CCAAGCATATATT	.	36	4	44	0	.	0	0	0	0	0	T	170789054	A	T	170789054	4	4	27	1	0	0	0	0	0	1	0	0	16350	224	8	5	595	5	TNIK	3	170789054	Nonsense_Mutation	SNP	A	TCGA-OR-A5K4-01A-11D-A29I-10	28380496	170789054	27233376	78	4489										
MAEA	10296	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	1305792	1305792	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	ctacgagacgctgaacaaacGctttcgcgccgctcagaaga	10	13	1	4	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	MAEA-91	NM_005882	exon2	c.G95A	p.R32H	ACAAACGCTTTCG	.	392	178	375	2	.	36	15	21	0	0	A	1305792	G	A	1305792	3	1	27	1	0	0	0	0	1	0	0	0	9181	1087	38	1	101	1	MAEA	4	1305792	Missense_Mutation	SNP	G	TCGA-OR-A5K4-01A-11D-A29I-10		1305792	189848484	79	4490										
LETM1	3954	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	1836604	1836604	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	cacagagaagtctttggtggCgctgcccttggctgccttgt	13	11	1	1	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	LETM1-90	NM_012318	exon5	c.G844A	p.A282T	TGGTGGCGCTGCC	.	163	71	163	0	.	26	17	9	0	0	T	1836604	C	T	1836604	3	4	27	1	0	0	0	0	1	0	0	0	8756	768	27	1	1415	1	LETM1	4	1836604	Missense_Mutation	SNP	C	TCGA-OR-A5K4-01A-11D-A29I-10	530812	1836604	189317672	80	4491										
DOK7	285489	broad.mit.edu	37	chr4	3494664	3494664	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	atggtgggtgcctcaaggccAccccccaagccgctgcgtcc	12	17	1	0	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	DOK7-91	NM_173660	exon7	c.A951C	p.P317P	AAGGCCACCCCCC	.	116	23	28	2	.	0	0	0	0	0	C	3494664	A	C	3494664	2	2	27	1	0	0	0	0	0	0	0	1	4713	146	6	5		5	DOK7	4	3494664	Silent	SNP	A	TCGA-OR-A5K4-01A-11D-A29I-10	1658060	3494664	187659612	81	4492										
STX18	53407	broad.mit.edu	37	chr4	4461210	4461210	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	cctcccatattcagacatggTatggctaaaaaaagacagca	7	10	1	2	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	STX18-90	NM_016930	exon3	c.A241G	p.T81A	ACATGGTATGGCT	.	216	5	144	0	.	0	0	0	0	0	C	4461210	T	C	4461210	3	2	27	1	0	0	0	0	1	0	0	0	15378	1638	57	4	802	4	STX18	4	4461210	Missense_Mutation	SNP	T	TCGA-OR-A5K4-01A-11D-A29I-10	966546	4461210	186693066	82	4493										
EVC	2121	bcgsc.ca	37	chr4	5800494	5800494	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	gaatgcagccaccaagagccGggccaaggacagggatgact	14	11	0	2	rs2279252	byfrequency	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	EVC-92	NM_153717	exon15	c.G2279A	p.R760Q	AGAGCCGGGCCAA	.	520	207	372	4	G|0.980;A|0.020	0	0	0	0	0	A	5800494	G	A	5800494	3	1	27	1	0	0	0	0	1	0	0	0	5298	1116	39	1	2337	1	EVC	4	5800494	Missense_Mutation	SNP	G	TCGA-OR-A5K4-01A-11D-A29I-10	1339284	5800494	185353782	83	4494										
SOD3	6649	hgsc.bcm.edu	37	chr4	24801354	24801354	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	aggtgcagccgtcggccacgCtggacgccgcgcagccccgg	16	17	0	0	rs8192291	byfrequency	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	SOD3-90	NM_003102	exon2	c.C211T	p.L71L	GCCACGCTGGACG	.	25	12	1	0	C|0.777;T|0.223	3	3	0	0	0	T	24801354	C	T	24801354	2	4	27	1	0	0	0	0	0	0	0	1	14957	796	28	3		3	SOD3	4	24801354	Silent	SNP	C	TCGA-OR-A5K4-01A-11D-A29I-10	19000860	24801354	166352922	84	4495										
ANAPC4	29945	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	25419944	25419944	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	aaccaacaagctggtgctgcCgctttagctccagagatagt	10	11	0	1	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	ANAPC4-293	NM_013367	exon29	c.C2367T	p.A789A	TGCTGCCGCTTTA	.	162	66	104	0	.	25	12	13	0	0	T	25419944	C	T	25419944	2	4	27	1	0	0	0	0	0	0	0	1	604	639	23	1		1	ANAPC4	4	25419944	Silent	SNP	C	TCGA-OR-A5K4-01A-11D-A29I-10	618590	25419944	165734332	85	4496										
SRP72	6731	bcgsc.ca;mdanderson.org	37	chr4	57350950	57350950	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	gtttacagtcccaaagtcccGagcatctcttacctgtgtta	7	12	1	0	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	SRP72-116	NM_006947	exon10	c.G1006A	p.E336K	AGTCCCGAGCATC	.	72	36	51	1	.	37	21	16	0	0	A	57350950	G	A	57350950	3	1	27	1	0	0	0	0	1	0	0	0	15194	1059	37	1	1044	1	SRP72	4	57350950	Missense_Mutation	SNP	G	TCGA-OR-A5K4-01A-11D-A29I-10	31931006	57350950	133803326	86	4497										
PF4	5196	broad.mit.edu;bcgsc.ca	37	chr4	74847662	74847662	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	gaggcgcagaacccggctgcGgagctcatgctgcggcagag	17	12	1	2	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	PF4-90	NM_002619	exon1	c.C9T	p.S3S	GGCTGCGGAGCTC	.	427	11	325	0	.	0	0	0	0	0	A	74847662	G	A	74847662	2	1	27	1	0	0	0	0	0	0	0	1	11781	1103	39	1		1	PF4	4	74847662	Silent	SNP	G	TCGA-OR-A5K4-01A-11D-A29I-10	17496712	74847662	116306614	87	4498										
FRAS1	80144	broad.mit.edu	37	chr4	79393383	79393383	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	gctgaccatggacccagacaCcgaggacgcgcagcttgtct	12	14	1	2	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	FRAS1-68	NM_025074	exon52	c.C7421A	p.T2474N	CAGACACCGAGGA	.	310	7	217	0	.	0	0	0	0	0	A	79393383	C	A	79393383	3	1	27	1	0	0	0	0	1	0	0	0	6061	507	18	3	7702	3	FRAS1	4	79393383	Missense_Mutation	SNP	C	TCGA-OR-A5K4-01A-11D-A29I-10	4545721	79393383	111760893	88	4499										
COL25A1	84570	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	109810390	109810390	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	atattaccttttgccctggaCgaccagattccccaggttct	7	13	1	1	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	COL25A1-92	NM_198721	exon17	c.G962A	p.R321H	CCTGGACGACCAG	.	100	42	67	0	.	0	0	0	0	0	T	109810390	C	T	109810390	3	4	27	1	0	0	0	0	1	0	0	0	3690	536	19	1	1170	1	COL25A1	4	109810390	Missense_Mutation	SNP	C	TCGA-OR-A5K4-01A-11D-A29I-10	30417007	109810390	81343886	89	4500										
LARP7	51574	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr4	113570694	113570694	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	catttctttccttgtaggagCgaatggatggatttgaaaaa	10	5	1	1	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	LARP7-93	NM_001267039	exon11	c.C1167T	p.S389S	TAGGAGCGAATGG	.	261	26	175	0	.	0	0	0	0	0	T	113570694	C	T	113570694	2	4	27	1	0	0	0	0	0	0	0	1	8655	767	27	1		1	LARP7	4	113570694	Silent	SNP	C	TCGA-OR-A5K4-01A-11D-A29I-10	3760304	113570694	77583582	90	4501										
FABP2	2169	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	120240719	120240719	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	gttcatcacctataatttctCggacagtattcagttcgttt	6	9	4	0	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	FABP2-91	NM_000134	exon3	c.G320A	p.R107Q	ATTTCTCGGACAG	.	76	29	63	0	.	35	7	28	0	0	T	120240719	C	T	120240719	3	4	27	1	0	0	0	0	1	0	0	0	5373	884	31	1	86	1	FABP2	4	120240719	Missense_Mutation	SNP	C	TCGA-OR-A5K4-01A-11D-A29I-10	6670025	120240719	70913557	91	4502										
IRF2	3660	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	185340688	185340688	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	catcccacccatgtctagccGcatgcatccaggggatctga	9	15	2	1	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	IRF2-91	NM_002199	exon3	c.C122T	p.A41V	CTAGCCGCATGCA	.	85	35	67	0	.	33	19	14	0	0	A	185340688	G	A	185340688	3	1	27	1	0	0	0	0	1	0	0	0	7849	1087	38	1	955	1	IRF2	4	185340688	Missense_Mutation	SNP	G	TCGA-OR-A5K4-01A-11D-A29I-10	65099969	185340688	5813588	92	4503										
FAT1	2195	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	187629666	187629666	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	acgcttttctgtcacttgttGttacttcaagttcaaaatgg	7	8	4	0	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	FAT1-34	NM_005245	exon2	c.C1316A	p.T439K	CTTGTTGTTACTT	.	186	95	114	0	.	0	0	0	0	0	T	187629666	G	T	187629666	3	4	27	1	0	0	0	0	1	0	0	0	5708	1377	48	3	12554	3	FAT1	4	187629666	Missense_Mutation	SNP	G	TCGA-OR-A5K4-01A-11D-A29I-10	2288978	187629666	3524610	93	4504										
LRRC14B	389257	hgsc.bcm.edu	37	chr5	191992	191992	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	ctgcgggtggctgacctcacGggcatccgagatgtgcaggt	16	11	1	2	rs34710524	byfrequency	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	LRRC14B-69	NM_001080478	exon1	c.G339A	p.T113T	CCTCACGGGCATC	.	8	7	0	0	G|0.975;A|0.025	0	0	0	0	0	A	191992	G	A	191992	2	1	27	1	0	0	0	0	0	0	0	1	8996	1103	39	1		1	LRRC14B	5	191992	Silent	SNP	G	TCGA-OR-A5K4-01A-11D-A29I-10		191992	180723268	94	4505										
EXOC3	11336	broad.mit.edu	37	chr5	466881	466881	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	ctgctggctgtgcgtggggaCgccagccgtgacatgaagca	16	11	0	2	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	EXOC3-90	NM_007277	exon13	c.C2106T	p.D702D	TGGGGACGCCAGC	.	447	8	409	0	.	63	60	3	0	0	T	466881	C	T	466881	2	4	27	1	0	0	0	0	0	0	0	1	5316	535	19	1		1	EXOC3	5	466881	Silent	SNP	C	TCGA-OR-A5K4-01A-11D-A29I-10	274889	466881	180448379	95	4506										
SLC12A7	10723	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	1089183	1089183	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	caggcgcaggaagaggatgaCgcccaggatgttctgcaggc	16	10	1	2	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	SLC12A7-138	NM_006598	exon4	c.G403A	p.V135I	GGATGACGCCCAG	.	267	131	206	1	.	1	0	1	0	0	T	1089183	C	T	1089183	3	4	27	1	0	0	0	0	1	0	0	0	14423	536	19	1	2932	1	SLC12A7	5	1089183	Missense_Mutation	SNP	C	TCGA-OR-A5K4-01A-11D-A29I-10	622302	1089183	179826077	96	4507										
PARP8	79668	ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	50090917	50090917	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	atcgcacaaacttttgaaccGtccttgccctgcagctgtta	7	13	0	1	rs201467874		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	PARP8-586	NM_001178056	exon12	c.G1094A	p.R365H	TGAACCGTCCTTG	.	302	143	227	2	G|0.999;A|0.000	38	20	17	1	0	A	50090917	G	A	50090917	3	1	27	1	0	0	0	0	1	0	0	0	11494	1145	40	1	1140	1	PARP8	5	50090917	Missense_Mutation	SNP	G	TCGA-OR-A5K4-01A-11D-A29I-10	49001734	50090917	130824343	97	4508										
SNX18	112574	hgsc.bcm.edu	37	chr5	53814052	53814052	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	gggggcttcgagcccctgccTgtcgcgccccccgcctcctt	12	20	0	0	rs2548615		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	SNX18-226	NM_052870	exon1	c.T270C	p.P90P	CCTGCCTGTCGCG	.	8	8	0	0	G|0.979;C|0.003	0	0	0	0	0	C	53814052	T	C	53814052	2	2	27	1	0	0	0	0	0	0	0	1	14924	1567	55	4		4	SNX18	5	53814052	Silent	SNP	T	TCGA-OR-A5K4-01A-11D-A29I-10	3723135	53814052	127101208	98	4509										
SGTB	54557	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	65000123	65000123	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	tacctgttgcaatagtaaacTgcattattgggatccaattc	7	8	0	0	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	SGTB-90	NM_019072	exon5	c.A357C	p.A119A	GTAAACTGCATTA	.	86	43	59	0	.	0	0	0	0	0	G	65000123	T	G	65000123	2	3	27	1	0	0	0	0	0	0	0	1	14261	1567	55	5		5	SGTB	5	65000123	Silent	SNP	T	TCGA-OR-A5K4-01A-11D-A29I-10	11186071	65000123	115915137	99	4510										
GCNT4	51301	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	74325230	74325230	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	attgaagacttcagaaggtcCgacaagcaatttaaatcagc	8	8	2	3	rs148761969	byfrequency	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	GCNT4-93	NM_016591	exon1	c.G633A	p.S211S	AAGGTCCGACAAG	.	137	74	82	0	C|0.999;T|0.001	3	2	1	0	0	T	74325230	C	T	74325230	2	4	27	1	0	0	0	0	0	0	0	1	6323	639	23	1		1	GCNT4	5	74325230	Silent	SNP	C	TCGA-OR-A5K4-01A-11D-A29I-10	9325107	74325230	106590030	100	4511										
ARSB	411	ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	78076460	78076460	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	tcagaaacattgtattgagaCggtggagggaaccagtaacc	12	7	1	2	rs35757003	byfrequency	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	ARSB-91	NM_000046	exon8	c.G1362A	p.P454P	TTGAGACGGTGGA	.	177	68	113	0	C|0.951;T|0.049	4	3	1	0	0	T	78076460	C	T	78076460	2	4	27	1	0	0	0	0	0	0	0	1	989	523	19	1		1	ARSB	5	78076460	Silent	SNP	C	TCGA-OR-A5K4-01A-11D-A29I-10	3751230	78076460	102838800	101	4512										
CKMT2	1160	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	80548557	80548557	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	agcacaacaactgcatggccGagtgcctcacccccgccatt	8	17	1	0	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	CKMT2-90	NM_001825	exon4	c.G196A	p.E66K	ATGGCCGAGTGCC	.	293	127	239	0	.	6	1	5	0	0	A	80548557	G	A	80548557	3	1	27	1	0	0	0	0	1	0	0	0	3457	1059	37	1	202	1	CKMT2	5	80548557	Missense_Mutation	SNP	G	TCGA-OR-A5K4-01A-11D-A29I-10	2472097	80548557	100366703	102	4513										
HAPLN1	1404	bcgsc.ca	37	chr5	82937410	82937410	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	agcctcagtaggactgcagcGccttcttggcctagagatgg	13	11	2	1	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	HAPLN1-580	NM_001884	exon5	c.C970T	p.R324C	TGCAGCGCCTTCT	.	373	169	242	3	.	0	0	0	0	0	A	82937410	G	A	82937410	3	1	27	1	0	0	0	0	1	0	0	0	6975	1087	38	1	98	1	HAPLN1	5	82937410	Missense_Mutation	SNP	G	TCGA-OR-A5K4-01A-11D-A29I-10	2388853	82937410	97977850	103	4514										
LMNB1	4001	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	126154661	126154661	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	gaattagaggacttgcttgcTaaagaaaaagacaactctcg	9	7	1	3	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	LMNB1-226	NM_005573	exon6	c.T987C	p.A329A	GCTTGCTAAAGAA	.	362	172	257	1	.	25	18	7	0	0	C	126154661	T	C	126154661	2	2	27	1	0	0	0	0	0	0	0	1	8873	1509	53	4		4	LMNB1	5	126154661	Silent	SNP	T	TCGA-OR-A5K4-01A-11D-A29I-10	43217251	126154661	54760599	104	4515										
PCDHB11	56125	ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	140581614	140581614	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	ccagtacgaggtgtgtctgaCgggaggttccgagacaaatg	15	8	1	2	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	PCDHB11-96	NM_018931	exon1	c.C2267T	p.T756M	GTCTGACGGGAGG	.	304	121	197	2	.	1	1	0	0	0	T	140581614	C	T	140581614	3	4	27	1	0	0	0	0	1	0	0	0	11565	536	19	1	2269	1	PCDHB11	5	140581614	Missense_Mutation	SNP	C	TCGA-OR-A5K4-01A-11D-A29I-10	14426953	140581614	40333646	105	4516										
TCOF1	6949	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	149755751	149755751	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	agtgggcacccaagccccccGgaaagcaggaactgcgactt	12	14	0	0	rs146735293	byfrequency	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	TCOF1-155	NM_001135243	exon13	c.G2000A	p.R667Q	CCCCCCGGAAAGC	.	213	112	115	1	G|0.998;A|0.002	26	13	13	0	0	A	149755751	G	A	149755751	3	1	27	1	0	0	0	0	1	0	0	0	15745	1116	39	1	2050	1	TCOF1	5	149755751	Missense_Mutation	SNP	G	TCGA-OR-A5K4-01A-11D-A29I-10	9174137	149755751	31159509	106	4517										
RNF145	153830	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	158595954	158595954	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	agactgtaggatagaagctaCgacaatgaaaaggataatac	10	5	0	3	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	RNF145-525	NM_001199380	exon8	c.G1138A	p.V380I	AAGCTACGACAAT	.	516	222	382	0	.	40	24	16	0	0	T	158595954	C	T	158595954	3	4	27	1	0	0	0	0	1	0	0	0	13482	536	19	1	959	1	RNF145	5	158595954	Missense_Mutation	SNP	C	TCGA-OR-A5K4-01A-11D-A29I-10	8840203	158595954	22319306	107	4518										
GABRB2	2561	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	160757958	160757958	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	ctcagctgctttcttttggcGttggggccccctcccaaaga	10	14	2	1	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	GABRB2-91	NM_021911	exon9	c.C1009T	p.R337C	TTTGGCGTTGGGG	.	209	89	107	0	.	3	2	1	0	0	A	160757958	G	A	160757958	3	1	27	1	0	0	0	0	1	0	0	0	6186	1145	40	1	541	1	GABRB2	5	160757958	Missense_Mutation	SNP	G	TCGA-OR-A5K4-01A-11D-A29I-10	2162004	160757958	20157302	108	4519										
UNC5A	90249	broad.mit.edu;bcgsc.ca	37	chr5	176305512	176305512	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	acatctggaatggcacgcagCggtacttgcactgcaccttc	10	13	1	0	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	UNC5A-91	NM_133369	exon13	c.C2056T	p.R686W	ACGCAGCGGTACT	.	464	35	364	1	.	0	0	0	0	0	T	176305512	C	T	176305512	3	4	27	1	0	0	0	0	1	0	0	0	17029	759	27	1	2106	1	UNC5A	5	176305512	Missense_Mutation	SNP	C	TCGA-OR-A5K4-01A-11D-A29I-10	15547554	176305512	4609748	109	4520										
PDLIM7	9260	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	176916510	176916510	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	cggctctgcagcggcgtgggCgtggccggctggctgtgccg	20	13	1	0	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	PDLIM7-153	NM_005451	exon9	c.G753A	p.T251T	CGTGGGCGTGGCC	.	231	118	97	0	.	0	0	0	0	0	T	176916510	C	T	176916510	2	4	27	1	0	0	0	0	0	0	0	1	11713	755	27	1		1	PDLIM7	5	176916510	Silent	SNP	C	TCGA-OR-A5K4-01A-11D-A29I-10	610998	176916510	3998750	110	4521										
FAM193B	54540	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	176951844	176951844	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	ggctcgcctggagcttgtaaCgtgtggttctgaggggagcc	17	9	1	1	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	.	NM_001190946	exon6	c.G1638A	p.T546T	TTGTAACGTGTGG	.	102	40	47	0	.	31	17	14	0	0	T	176951844	C	T	176951844	2	4	27	1	0	0	0	0	0	0	0	1	5541	523	19	1		1	FAM193B	5	176951844	Silent	SNP	C	TCGA-OR-A5K4-01A-11D-A29I-10	35334	176951844	3963416	111	4522										
B4GALT7	11285	broad.mit.edu	37	chr5	177034387	177034387	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	gccatgcacgacgttgacctGctccctctcaacgaggagct	10	15	1	1	rs140848441		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	B4GALT7-91	NM_007255	exon3	c.G498A	p.L166L	TGACCTGCTCCCT	.	241	5	183	0	G|0.999;A|0.001	41	41	0	0	0	A	177034387	G	A	177034387	2	1	27	1	0	0	0	0	0	0	0	1	1277	1306	46	3		3	B4GALT7	5	177034387	Silent	SNP	G	TCGA-OR-A5K4-01A-11D-A29I-10	82543	177034387	3880873	112	4523										
MAML1	9794	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	179193193	179193193	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	ggaggggcctcagagctgtcCtctgcccaccagctccagca	12	16	2	1	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	MAML1-848	NM_014757	exon2	c.C1182A	p.S394S	GCTGTCCTCTGCC	.	130	64	80	0	.	22	15	7	0	0	A	179193193	C	A	179193193	2	1	27	1	0	0	0	0	0	0	0	1	9233	668	24	3		3	MAML1	5	179193193	Silent	SNP	C	TCGA-OR-A5K4-01A-11D-A29I-10	2158806	179193193	1722067	113	4524										
FLT4	2324	broad.mit.edu	37	chr5	180051011	180051011	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	cggcatcctgcgtggtcaccGccctccagtcacggcactgt	11	17	2	0	rs146167161	byfrequency	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	FLT4-1490	NM_182925	exon11	c.C1472T	p.A491V	GTCACCGCCCTCC	.	236	8	172	0	G|0.999;A|0.001	1	1	0	0	0	A	180051011	G	A	180051011	3	1	27	1	0	0	0	0	1	0	0	0	5963	1087	38	1	2707	1	FLT4	5	180051011	Missense_Mutation	SNP	G	TCGA-OR-A5K4-01A-11D-A29I-10	857818	180051011	864249	114	4525										
JARID2	3720	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	15501341	15501341	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	ccctgtccccagaggagcacCggcggctggagaaggaggtg	17	12	0	2	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	JARID2-228	NM_004973	exon8	c.C2149T	p.R717W	GAGCACCGGCGGC	.	190	176	245	2	.	1	1	0	0	0	T	15501341	C	T	15501341	3	4	27	1	0	0	0	0	1	0	0	0	7966	643	23	1	2179	1	JARID2	6	15501341	Missense_Mutation	SNP	C	TCGA-OR-A5K4-01A-11D-A29I-10		15501341	155613726	115	4526										
ALDH5A1	7915	broad.mit.edu	37	chr6	24533862	24533862	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	tttggtggagtgaagcagtcCggccttgggcgagaggggtc	19	7	0	2	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	ALDH5A1-90	NM_170740	exon11	c.C1569T	p.S523S	GCAGTCCGGCCTT	.	155	6	177	0	.	11	11	0	0	0	T	24533862	C	T	24533862	2	4	27	1	0	0	0	0	0	0	0	1	502	639	23	1		1	ALDH5A1	6	24533862	Silent	SNP	C	TCGA-OR-A5K4-01A-11D-A29I-10	9032521	24533862	146581205	116	4527										
C2	717	broad.mit.edu	37	chr6	31895915	31895915	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	gcagaccccaggagccacccGgtctctgtctaaggcggtct	12	15	3	1	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	C2-92	NM_000063	exon2	c.G230A	p.R77Q	CCACCCGGTCTCT	.	28	3	33	0	.	0	0	0	0	0	A	31895915	G	A	31895915	3	1	27	1	0	0	0	0	1	0	0	0	2080	1116	39	1	313	1	C2	6	31895915	Missense_Mutation	SNP	G	TCGA-OR-A5K4-01A-11D-A29I-10	7362053	31895915	139219152	117	4528										
HLA-DQB1	3119	bcgsc.ca	37	chr6	32632770	32632770	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	ctcctctcggttatagatgtAtctggtcacaagacgcacgc	9	12	3	2	rs1049069	byfrequency	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	HLA-DQB1-22	NM_002123	exon2	c.T184C	p.Y62H	AGATGTATCTGGT	.	232	8	264	1	T|0.524;G|0.096;C|0.174;A|0.206	6	6	0	0	0	G	32632770	A	G	32632770	3	3	27	1	0	0	0	0	1	0	0	0	7227	449	16	4	617	4	HLA-DQB1	6	32632770	Missense_Mutation	SNP	A	TCGA-OR-A5K4-01A-11D-A29I-10	736855	32632770	138482297	118	4529										
TREML2	79865	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	41165918	41165918	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	tgttgcgcatgcaccagtatCggcctgagtcctggagcttg	13	11	0	1	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	TREML2-91	NM_024807	exon2	c.G305A	p.R102Q	CAGTATCGGCCTG	.	61	41	121	1	.	0	0	0	0	0	T	41165918	C	T	41165918	3	4	27	1	0	0	0	0	1	0	0	0	16511	884	31	1	676	1	TREML2	6	41165918	Missense_Mutation	SNP	C	TCGA-OR-A5K4-01A-11D-A29I-10	8533148	41165918	129949149	119	4530										
PEX6	5190	hgsc.bcm.edu	37	chr6	42946490	42946490	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	tccagcacccgcggtccgggCactgggagggtctctccgcg	15	16	1	0	rs9462858	byfrequency	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	PEX6-91	NM_000287	exon1	c.G399T	p.V133V	TCCGGGCACTGGG	.	10	10	0	0	C|0.673;A|0.327	11	0	11	0	0	A	42946490	C	A	42946490	2	1	27	1	0	0	0	0	0	0	0	1	11779	697	25	3		3	PEX6	6	42946490	Silent	SNP	C	TCGA-OR-A5K4-01A-11D-A29I-10	1780572	42946490	128168577	120	4531										
SLC35B2	347734	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	44222512	44222512	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	tgctttagacggccccgcgcGtagactctgagcaggagggc	15	12	1	3	rs146186426		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	SLC35B2-91	NM_178148	exon4	c.C1230T	p.Y410Y	CCGCGCGTAGACT	.	113	103	140	0	G|1.000;A|0.000	109	1	108	0	0	A	44222512	G	A	44222512	2	1	27	1	0	0	0	0	0	0	0	1	14611	1140	40	1		1	SLC35B2	6	44222512	Silent	SNP	G	TCGA-OR-A5K4-01A-11D-A29I-10	1276022	44222512	126892555	121	4532										
BEND3	57673	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	107390834	107390834	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	cttggagcggcgacccggccGctcgccctcgaagctgtcct	13	17	0	0	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	BEND3-71	NM_001080450	exon5	c.C1561T	p.R521W	CCGGCCGCTCGCC	.	28	25	64	0	.	2	0	2	0	0	A	107390834	G	A	107390834	3	1	27	1	0	0	0	0	1	0	0	0	1400	1086	38	1	929	1	BEND3	6	107390834	Missense_Mutation	SNP	G	TCGA-OR-A5K4-01A-11D-A29I-10	63168322	107390834	63724233	122	4533										
TULP4	56995	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	158900783	158900783	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	ttcccttcacttcctgccagCgccccatcatctccatctgc	4	20	4	0	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	TULP4-91	NM_020245	exon7	c.C1027T	p.R343C	TGCCAGCGCCCCA	.	56	52	106	0	.	0	0	0	0	0	T	158900783	C	T	158900783	3	4	27	1	0	0	0	0	1	0	0	0	16814	782	27	1	1053	1	TULP4	6	158900783	Missense_Mutation	SNP	C	TCGA-OR-A5K4-01A-11D-A29I-10	51509949	158900783	12214284	123	4534										
HEATR2	54919	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	780485	780485	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	gcggtggcctccgtggtgggCggctggctgctgtgtctgcg	20	11	1	0	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	HEATR2-69	NM_017802	exon3	c.C810T	p.G270G	GGTGGGCGGCTGG	.	105	80	147	0	.	7	1	6	0	0	T	780485	C	T	780485	2	4	27	1	0	0	0	0	0	0	0	1	7049	755	27	1		1	HEATR2	7	780485	Silent	SNP	C	TCGA-OR-A5K4-01A-11D-A29I-10		780485	158358178	124	4535										
SDK1	221935	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	4169611	4169611	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	cgagggaaccacacgcagtcGgccctgctggcaggcctgcg	15	15	0	0	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	SDK1-138	NM_152744	exon27	c.G4011A	p.S1337S	GCAGTCGGCCCTG	.	92	86	116	0	.	0	0	0	0	0	A	4169611	G	A	4169611	2	1	27	1	0	0	0	0	0	0	0	1	14003	1103	39	1		1	SDK1	7	4169611	Silent	SNP	G	TCGA-OR-A5K4-01A-11D-A29I-10	3389126	4169611	154969052	125	4536										
PMS2	5395	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	6042243	6042243	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	gttccaaccttcgccgatgcGtggcaggtagaaatggtgac	13	10	0	2	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	PMS2-1083	NM_000535	exon5	c.C378T	p.H126H	CGATGCGTGGCAG	.	72	8	107	1	.	13	13	0	0	0	A	6042243	G	A	6042243	2	1	27	1	0	0	0	0	0	0	0	1	12172	1136	40	1		1	PMS2	7	6042243	Silent	SNP	G	TCGA-OR-A5K4-01A-11D-A29I-10	1872632	6042243	153096420	126	4537										
C7orf26	79034	broad.mit.edu	37	chr7	6639759	6639759	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	actcaaaactccacctcagcGtcctgcaagtgctcatgacg	7	15	3	1	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	C7orf26-91	NM_024067	exon4	c.G880A	p.V294I	CTCAGCGTCCTGC	.	105	4	136	0	.	16	16	0	0	0	A	6639759	G	A	6639759	3	1	27	1	0	0	0	0	1	0	0	0	2387	1145	40	1	894	1	C7orf26	7	6639759	Missense_Mutation	SNP	G	TCGA-OR-A5K4-01A-11D-A29I-10	597516	6639759	152498904	127	4538										
HECW1	23072	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	43351432	43351432	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	tagaaactcccagagccgacGccggtgcaaggagccgctcc	12	15	0	2	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	HECW1-669	NM_015052	exon4	c.G98A	p.R33H	GCCGACGCCGGTG	.	84	8	97	0	.	0	0	0	0	0	A	43351432	G	A	43351432	3	1	27	1	0	0	0	0	1	0	0	0	7063	1087	38	1	104	1	HECW1	7	43351432	Missense_Mutation	SNP	G	TCGA-OR-A5K4-01A-11D-A29I-10	36711673	43351432	115787231	128	4539										
PHKG1	5260	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	56149873	56149873	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	cacatgtccacctctttcccGtagcccgggtggtcctcatt	8	16	2	0	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	PHKG1-424	NM_001258459	exon8	c.C717T	p.Y239Y	TTTCCCGTAGCCC	.	73	63	119	0	.	4	0	4	0	0	A	56149873	G	A	56149873	2	1	27	1	0	0	0	0	0	0	0	1	11875	1140	40	1		1	PHKG1	7	56149873	Silent	SNP	G	TCGA-OR-A5K4-01A-11D-A29I-10	12798441	56149873	102988790	129	4540										
GTPBP10	85865	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	89982177	89982177	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	ctcttcaccaggggaggatcCggtggaatgggttatcctcg	14	10	2	0	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	GTPBP10-68	NM_001042717	exon2	c.C81T	p.S27S	AGGATCCGGTGGA	.	102	94	165	2	.	1	0	1	0	0	T	89982177	C	T	89982177	2	4	27	1	0	0	0	0	0	0	0	1	6900	639	23	1		1	GTPBP10	7	89982177	Silent	SNP	C	TCGA-OR-A5K4-01A-11D-A29I-10	33832304	89982177	69156486	130	4541										
TSC22D4	81628	bcgsc.ca	37	chr7	100064719	100064719	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	cgcagcgttccgctccgccaAttcccggatctgctccttca	8	18	2	0	rs7806537	byfrequency	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	TSC22D4-220	NM_030935	exon5	c.T1051C	p.L351L	CCGCCAATTCCCG	.	93	5	119	0	A|0.644;G|0.356	425	425	0	0	0	G	100064719	A	G	100064719	2	3	27	1	0	0	0	0	0	0	0	1	16648	98	4	4		4	TSC22D4	7	100064719	Silent	SNP	A	TCGA-OR-A5K4-01A-11D-A29I-10	10082542	100064719	59073944	131	4542										
DOCK4	9732	broad.mit.edu	37	chr7	111629088	111629088	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	actcattgccccagtcaagcCgggcagtaatgtggcgcttc	11	13	2	0	rs200422451		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	DOCK4-26	NM_014705	exon6	c.G446A	p.R149Q	TCAAGCCGGGCAG	.	117	4	177	1	C|0.999;T|0.000	0	0	0	0	0	T	111629088	C	T	111629088	3	4	27	1	0	0	0	0	1	0	0	0	4700	652	23	1	5642	1	DOCK4	7	111629088	Missense_Mutation	SNP	C	TCGA-OR-A5K4-01A-11D-A29I-10	11564369	111629088	47509575	132	4543										
PLXNA4	91584	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	131913155	131913155	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	gttgggatggaccgtcagccGgacacactgcttcatctccg	12	13	3	0	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	PLXNA4-91	NM_020911	exon6	c.C1678T	p.R560W	TCAGCCGGACACA	.	129	115	219	1	.	1	0	1	0	0	A	131913155	G	A	131913155	3	1	27	1	0	0	0	0	1	0	0	0	12151	1115	39	1	4114	1	PLXNA4	7	131913155	Missense_Mutation	SNP	G	TCGA-OR-A5K4-01A-11D-A29I-10	20284067	131913155	27225508	133	4544										
MLL3	58508	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	151864452	151864452	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	ccactcttcatactgcttacGctgtgaatcatctgaggaaa	7	11	4	2	rs145072739		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	MLL3-1398	NM_170606	exon42	c.C9529T	p.R3177C	GCTTACGCTGTGA	.	31	30	35	0	G|1.000;A|0.000	0	0	0	0	0	A	151864452	G	A	151864452	3	1	27	1	0	0	0	0	1	0	0	0	9650	1087	38	1	5278	1	MLL3	7	151864452	Missense_Mutation	SNP	G	TCGA-OR-A5K4-01A-11D-A29I-10	19951297	151864452	7274211	134	4545										
SGK223	0	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr8	8185743	8185743	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	cgtcgtggacgttggtttccGagtggcttaggttcagcttg	15	8	1	0	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	.	NM_001080826	exon4	c.C2549T	p.S850L	GTTTCCGAGTGGC	.	142	58	133	0	.	2	2	0	0	0	A	8185743	G	A	8185743	3	1	27	1	0	0	0	0	1	0	0	0	14245	1059	37	1	1667	1	SGK223	8	8185743	Missense_Mutation	SNP	G	TCGA-OR-A5K4-01A-11D-A29I-10		8185743	138178279	135	4546										
SOX7	83595	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	chr8	10583913	10583913	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	gaggctgggcagggcagtgcCgggggagtactcacccctgt	18	11	1	0	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	SOX7-522	NM_031439	exon2	c.G502A	p.G168S	CAGTGCCGGGGGA	.	75	39	13	0	.	0	0	0	0	0	T	10583913	C	T	10583913	3	4	27	1	0	0	0	0	1	0	0	0	14991	652	23	1	668	1	SOX7	8	10583913	Missense_Mutation	SNP	C	TCGA-OR-A5K4-01A-11D-A29I-10	2398170	10583913	135780109	136	4547										
DLC1	10395	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr8	12950218	12950218	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	ggtcatctggttttcttttaCggctgctgtgacatcgctca	10	10	4	1	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	DLC1-657	NM_182643	exon13	c.G3643A	p.V1215I	CTTTTACGGCTGC	.	226	112	203	0	.	5	3	2	0	0	T	12950218	C	T	12950218	3	4	27	1	0	0	0	0	1	0	0	0	4561	536	19	1	967	1	DLC1	8	12950218	Missense_Mutation	SNP	C	TCGA-OR-A5K4-01A-11D-A29I-10	2366305	12950218	133413804	137	4548										
MTUS1	57509	broad.mit.edu;bcgsc.ca	37	chr8	17611345	17611345	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	agggctaatcctatcaatgtTgggaacataggtcatttcca	9	8	2	0	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	MTUS1-92	NM_001001924	exon2	c.A1972G	p.N658D	CAATGTTGGGAAC	.	212	8	176	0	.	16	16	0	0	0	C	17611345	T	C	17611345	3	2	27	1	0	0	0	0	1	0	0	0	9993	1812	63	4	2215	4	MTUS1	8	17611345	Missense_Mutation	SNP	T	TCGA-OR-A5K4-01A-11D-A29I-10	4661127	17611345	128752677	138	4549										
SH2D4A	63898	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr8	19221709	19221709	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	gaggctgcaaagccccttgcGtgttccgcagaaaccagaaa	11	12	0	2	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	SH2D4A-90	NM_022071	exon7	c.G833A	p.R278H	CCTTGCGTGTTCC	.	121	60	85	0	.	13	9	4	0	0	A	19221709	G	A	19221709	3	1	27	1	0	0	0	0	1	0	0	0	14270	1145	40	1	905	1	SH2D4A	8	19221709	Missense_Mutation	SNP	G	TCGA-OR-A5K4-01A-11D-A29I-10	1610364	19221709	127142313	139	4550										
ENTPD4	9583	broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr8	23302032	23302032	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	gaggtgtctctttgtgttttGcccgtggcacatgctctgca	12	10	2	0	rs200123530	alternate_allele	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	ENTPD4-92	NM_004901	exon5	c.C500T	p.A167V	TGTTTTGCCCGTG	.	134	70	101	1	G|0.999;T|0.000	13	10	3	0	0	A	23302032	G	A	23302032	3	1	27	1	0	0	0	0	1	0	0	0	5154	1319	46	3	1386	3	ENTPD4	8	23302032	Missense_Mutation	SNP	G	TCGA-OR-A5K4-01A-11D-A29I-10	4080323	23302032	123061990	140	4551										
UBE2V2	7336	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr8	48955657	48955657	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	gaaggacaaaaaggagtaggCgacggtacagttagctgggg	17	5	0	0	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	UBE2V2-659	NM_003350	exon2	c.C81T	p.G27G	AGTAGGCGACGGT	.	191	13	148	0	.	38	37	1	0	0	T	48955657	C	T	48955657	2	4	27	1	0	0	0	0	0	0	0	1	16914	755	27	1		1	UBE2V2	8	48955657	Silent	SNP	C	TCGA-OR-A5K4-01A-11D-A29I-10	25653625	48955657	97408365	141	4552										
YTHDF3	253943	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr8	64099263	64099263	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	tgcccccagttagcagtgcaGcacctaaaccaacctcctgg	8	16	0	0	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	.	.	.	.	.	AGTGCAGCACCTA	.	240	126	182	0	.	16	5	11	0	0	A	64099263	G	A	64099263	3	1	27	1	0	0	0	0	1	0	0	0	17538	962	34	3	707	3	YTHDF3	8	64099263	Missense_Mutation	SNP	G	TCGA-OR-A5K4-01A-11D-A29I-10	15143606	64099263	82264759	142	4553										
PREX2	80243	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr8	68939483	68939483	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	atgctgcttggaggacggaaGaacacagatgttcccttgga	13	8	0	2	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	PREX2-390	NM_025170	exon5	c.G468T	p.K156N	ACGGAAGAACACA	.	205	96	143	0	.	0	0	0	0	0	T	68939483	G	T	68939483	3	4	27	1	0	0	0	0	1	0	0	0	12509	933	33	3	486	3	PREX2	8	68939483	Missense_Mutation	SNP	G	TCGA-OR-A5K4-01A-11D-A29I-10	4840220	68939483	77424539	143	4554										
OSR2	116039	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr8	99961683	99961683	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	aggaaggttgccctccaaaaCgaaaaaagagtttatctgca	9	8	1	1	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	OSR2-1	NM_053001	exon2	c.C503T	p.T168M	CCAAAACGAAAAA	.	285	138	182	1	.	26	15	11	0	0	T	99961683	C	T	99961683	3	4	27	1	0	0	0	0	1	0	0	0	11323	536	19	1	505	1	OSR2	8	99961683	Missense_Mutation	SNP	C	TCGA-OR-A5K4-01A-11D-A29I-10	31022200	99961683	46402339	144	4555										
RIMS2	9699	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr8	105263855	105263855	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	cgtctggggagattatggccGcatggatcacaaatctttta	11	8	3	1	rs200286153	alternate_allele	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	RIMS2-279	NM_001100117	exon24	c.G3857A	p.R1286H	ATGGCCGCATGGA	.	150	60	98	1	G|1.000;T|0.000	9	5	3	1	0	A	105263855	G	A	105263855	3	1	27	1	0	0	0	0	1	0	0	0	13403	1087	38	1	4147	1	RIMS2	8	105263855	Missense_Mutation	SNP	G	TCGA-OR-A5K4-01A-11D-A29I-10	5302172	105263855	41100167	145	4556										
UTP23	84294	bcgsc.ca	37	chr8	117778849	117778849	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	ccggtaagccaggcatgaagAtcacaaggcagaaacatgcc	11	11	1	3	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	UTP23-226	NM_032334	exon1	c.A7T	p.I3F	ATGAAGATCACAA	.	376	173	296	5	.	10	5	5	0	0	T	117778849	A	T	117778849	3	4	27	1	0	0	0	0	1	0	0	0	17138	333	12	5	9	5	UTP23	8	117778849	Missense_Mutation	SNP	A	TCGA-OR-A5K4-01A-11D-A29I-10	12514994	117778849	28585173	146	4557										
C8orf31	286122	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr8	144126154	144126154	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	ccccatccaggaaggggcacGagaccacgctgcaggaggcc	14	15	0	1	rs74447754	byfrequency	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	C8orf31-91	NM_173687	exon4	c.G275A	p.R92Q	GGGCACGAGACCA	.	152	74	127	0	G|0.990;A|0.010	27	12	15	0	0	A	144126154	G	A	144126154	3	1	27	1	0	0	0	0	1	0	0	0	2426	1058	37	1	285	1	C8orf31	8	144126154	Missense_Mutation	SNP	G	TCGA-OR-A5K4-01A-11D-A29I-10	26347305	144126154	2237868	147	4558										
ZNF696	79943	hgsc.bcm.edu	37	chr8	144378868	144378868	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	ggcttcttccggcaccagcgActccacacgggcgagaagcc	12	16	1	1	rs7386259	byfrequency	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	ZNF696-90	NM_030895	exon3	c.A1023G	p.R341R	CCAGCGACTCCAC	.	8	8	1	0	A|0.118;G|0.882	9	0	9	0	0	G	144378868	A	G	144378868	2	3	27	1	0	0	0	0	0	0	0	1	18136	262	10	4		4	ZNF696	8	144378868	Silent	SNP	A	TCGA-OR-A5K4-01A-11D-A29I-10	252714	144378868	1985154	148	4559										
EPPK1	83481	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr8	144940488	144940488	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	ctgctgcccggtgtaggggtCggtgtagccggtgacggcgc	19	11	0	1	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	EPPK1-25	NM_031308	exon1	c.G6934A	p.D2312N	AGGGGTCGGTGTA	.	452	36	229	0	.	0	0	0	0	0	T	144940488	C	T	144940488	3	4	27	1	0	0	0	0	1	0	0	0	5203	884	31	1	332	1	EPPK1	8	144940488	Missense_Mutation	SNP	C	TCGA-OR-A5K4-01A-11D-A29I-10	561620	144940488	1423534	149	4560										
EPPK1	83481	hgsc.bcm.edu	37	chr8	144940621	144940621	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	tcgatgacgaagccggtggcCgcctgcgcctccagcagcac	13	16	0	1	rs201634698		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	EPPK1-25	NM_031308	exon1	c.G6801A	p.A2267A	GGTGGCCGCCTGC	.	40	12	3	0	C|0.998;T|0.002	0	0	0	0	0	T	144940621	C	T	144940621	2	4	27	1	0	0	0	0	0	0	0	1	5203	639	23	1		1	EPPK1	8	144940621	Silent	SNP	C	TCGA-OR-A5K4-01A-11D-A29I-10	133	144940621	1423401	150	4561										
EPPK1	83481	broad.mit.edu	37	chr8	144942188	144942188	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	tctcggggtcctccacacagCgctccagaagctgcaggtac	11	15	1	1	rs187594766	by1000genomes	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	EPPK1-25	NM_031308	exon1	c.G5234A	p.R1745H	ACACAGCGCTCCA	.	310	9	212	1	C|0.999;T|0.001	0	0	0	0	0	T	144942188	C	T	144942188	3	4	27	1	0	0	0	0	1	0	0	0	5203	768	27	1	2032	1	EPPK1	8	144942188	Missense_Mutation	SNP	C	TCGA-OR-A5K4-01A-11D-A29I-10	1567	144942188	1421834	151	4562										
PLEC	5339	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr8	144994967	144994967	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	gtccacctcggctacgtctcGcacagagcgctcacctcgct	9	18	2	1	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	PLEC-141	NM_201380	exon32	c.C9433T	p.R3145X	CGTCTCGCACAGA	.	164	82	83	0	.	41	20	21	0	0	A	144994967	G	A	144994967	4	1	27	1	0	0	0	0	0	1	0	0	12081	1095	38	1	4625	1	PLEC	8	144994967	Nonsense_Mutation	SNP	G	TCGA-OR-A5K4-01A-11D-A29I-10	52779	144994967	1369055	152	4563										
PLEC	5339	hgsc.bcm.edu	37	chr8	144998169	144998169	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	cgccgccgctcctcctccgcCgccagctgccgctgcctcgc	10	24	0	0	rs1140522	byfrequency	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	PLEC-141	NM_201380	exon31	c.G6339A	p.A2113A	CTCCGCCGCCAGC	.	14	14	0	0	C|0.740;T|0.260	7	0	7	0	0	T	144998169	C	T	144998169	2	4	27	1	0	0	0	0	0	0	0	1	12081	639	23	1		1	PLEC	8	144998169	Silent	SNP	C	TCGA-OR-A5K4-01A-11D-A29I-10	3202	144998169	1365853	153	4564										
PLEC	5339	hgsc.bcm.edu	37	chr8	145001784	145001784	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	agcctgccagcgctcaagcaActgggcgacccgctcccgcc	11	19	1	0	rs3135109	byfrequency	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	PLEC-141	NM_201380	exon27	c.T3961C	p.L1321L	CAAGCAACTGGGC	.	8	8	0	0	G|0.246;A|0.754	23	0	22	1	0	G	145001784	A	G	145001784	2	3	27	1	0	0	0	0	0	0	0	1	12081	40	2	4		4	PLEC	8	145001784	Silent	SNP	A	TCGA-OR-A5K4-01A-11D-A29I-10	3615	145001784	1362238	154	4565										
RECQL4	9401	bcgsc.ca	37	chr8	145738769	145738769	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	accgtggccaccaccacccgGcaactggccctgcatgaagg	11	17	0	1	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	RECQL4-1083	NM_004260	exon14	c.C2296T	p.R766W	CACCCGGCAACTG	.	218	101	104	0	.	0	0	0	0	0	A	145738769	G	A	145738769	3	1	27	1	0	0	0	0	1	0	0	0	13237	1203	42	3	1363	3	RECQL4	8	145738769	Missense_Mutation	SNP	G	TCGA-OR-A5K4-01A-11D-A29I-10	736985	145738769	625253	155	4566										
LRRC14	9684	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr8	145745151	145745151	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	agcacacggcaggtgctgcaGtgccagccagctgcctgcca	13	15	0	0	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	LRRC14-90	NM_001272036	exon3	c.G42A	p.Q14Q	GCTGCAGTGCCAG	.	198	105	183	0	.	14	7	7	0	0	A	145745151	G	A	145745151	2	1	27	1	0	0	0	0	0	0	0	1	8995	1020	36	3		3	LRRC14	8	145745151	Silent	SNP	G	TCGA-OR-A5K4-01A-11D-A29I-10	6382	145745151	618871	156	4567										
ZNF517	340385	hgsc.bcm.edu	37	chr8	146033347	146033347	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	gggtgcccaggacggcggcgTggggcagggcgccctgctcg	21	13	0	0	rs2976653		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	ZNF517-90	NM_213605	exon5	c.T1046C	p.V349A	GCGGCGTGGGGCA	.	15	15	0	0	G|0.992;C|0.006	6	0	6	0	0	C	146033347	T	C	146033347	3	2	27	1	0	0	0	0	1	0	0	0	17998	1696	59	4	1060	4	ZNF517	8	146033347	Missense_Mutation	SNP	T	TCGA-OR-A5K4-01A-11D-A29I-10	288196	146033347	330675	157	4568										
WASH1	100287171	hgsc.bcm.edu	37	chr9	14858	14858	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	gcctgtggctgctgcggtggCggcaaaggagggatggagtc	20	8	0	0	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	.	NM_182905	exon11	c.G1347C	p.P449P	CGGTGGCGGCAAA	.	366	63	250	0	.	15	15	0	0	0	G	14858	C	G	14858	2	3	27	1	0	0	0	0	0	0	0	1	17293	755	27	2		2	WASH1	9	14858	Silent	SNP	C	TCGA-OR-A5K4-01A-11D-A29I-10		14858	141198573	158	4569										
SMARCA2	6595	broad.mit.edu	37	chr9	2088608	2088608	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	aagttgaatcccagcttcccGaaaaagtatgttgcacaacc	7	11	0	1	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	SMARCA2-653	NM_139045	exon19	c.G2878A	p.E960K	CTTCCCGAAAAAG	.	104	5	116	0	.	0	0	0	0	0	A	2088608	G	A	2088608	3	1	27	1	0	0	0	0	1	0	0	0	14804	1059	37	1	2948	1	SMARCA2	9	2088608	Missense_Mutation	SNP	G	TCGA-OR-A5K4-01A-11D-A29I-10	2073750	2088608	139124823	159	4570										
TESK1	7016	bcgsc.ca	37	chr9	35609536	35609536	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	cgccacccccttcagctcccCgggagcccgatgaggggctg	13	18	1	1	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	TESK1-641	NM_006285	exon10	c.C1678T	p.R560W	GCTCCCCGGGAGC	.	44	40	28	1	.	22	1	21	0	0	T	35609536	C	T	35609536	3	4	27	1	0	0	0	0	1	0	0	0	15804	643	23	1	1716	1	TESK1	9	35609536	Missense_Mutation	SNP	C	TCGA-OR-A5K4-01A-11D-A29I-10	33520928	35609536	105603895	160	4571										
FBXO10	26267	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr9	37516027	37516027	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	cctgcaccagggccttggcaCggccccgcacggcgatgccg	14	18	0	0	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	FBXO10-637	NM_012166	exon10	c.G2570A	p.R857H	TTGGCACGGCCCC	.	122	109	161	0	.	5	1	4	0	0	T	37516027	C	T	37516027	3	4	27	1	0	0	0	0	1	0	0	0	5745	536	19	1	308	1	FBXO10	9	37516027	Missense_Mutation	SNP	C	TCGA-OR-A5K4-01A-11D-A29I-10	1906491	37516027	103697404	161	4572										
ANXA1	301	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	75774284	75774284	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	cattgacattctaactaagcGaaacaatgcacagcgtcaac	6	11	2	1	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	ANXA1-650	NM_000700	exon4	c.G215A	p.R72Q	CTAAGCGAAACAA	.	81	75	194	2	.	124	6	118	0	0	A	75774284	G	A	75774284	3	1	27	1	0	0	0	0	1	0	0	0	714	1058	37	1	225	1	ANXA1	9	75774284	Missense_Mutation	SNP	G	TCGA-OR-A5K4-01A-11D-A29I-10	38258257	75774284	65439147	162	4573										
GABBR2	9568	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr9	101258725	101258725	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	ttgacactggtacagggatcGttggagaagctctcggtgtc	14	8	1	2	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	GABBR2-518	NM_005458	exon4	c.C702T	p.N234N	GGGATCGTTGGAG	.	105	98	154	1	.	0	0	0	0	0	A	101258725	G	A	101258725	2	1	27	1	0	0	0	0	0	0	0	1	6175	1136	40	1		1	GABBR2	9	101258725	Silent	SNP	G	TCGA-OR-A5K4-01A-11D-A29I-10	25484441	101258725	39954706	163	4574										
SEC16A	9919	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	139354235	139354235	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	tgtcgcccatggtagccatcGtcctggactcgacgtccatg	11	14	0	0	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	.	NM_014866	exon15	c.C5165T	p.T1722M	GCCATCGTCCTGG	.	47	41	94	1	.	8	0	8	0	0	A	139354235	G	A	139354235	3	1	27	1	0	0	0	0	1	0	0	0	14021	1145	40	1	1980	1	SEC16A	9	139354235	Missense_Mutation	SNP	G	TCGA-OR-A5K4-01A-11D-A29I-10	38095510	139354235	1859196	164	4575										
C9orf172	389813	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr9	139739046	139739046	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	gacttcctggaggcgctggaCgggccggccatggagaccct	16	13	0	1	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	.	NM_001080482	exon1	c.C180T	p.D60D	GCTGGACGGGCCG	.	34	30	17	0	.	3	0	3	0	0	T	139739046	C	T	139739046	2	4	27	1	0	0	0	0	0	0	0	1	2477	535	19	1		1	C9orf172	9	139739046	Silent	SNP	C	TCGA-OR-A5K4-01A-11D-A29I-10	384811	139739046	1474385	165	4576										
ITIH5	80760	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr10	7608357	7608357	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	ggtgccccaattaactctccGttcactgtgacacctcaaag	7	14	3	1	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	ITIH5-92	NM_030569	exon13	c.C2163T	p.N721N	CTCTCCGTTCACT	.	82	71	98	0	.	0	0	0	0	0	A	7608357	G	A	7608357	2	1	27	1	0	0	0	0	0	0	0	1	7928	1136	40	1		1	ITIH5	10	7608357	Silent	SNP	G	TCGA-OR-A5K4-01A-11D-A29I-10		7608357	127926390	166	4577										
DHTKD1	55526	ucsc.edu;bcgsc.ca	37	chr10	12142210	12142210	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	agatgatggacggaatcaagCtagactgggccaccgcggaa	14	9	1	3	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	DHTKD1-515	NM_018706	exon9	c.C1705G	p.L569V	ATCAAGCTAGACT	.	38	4	36	0	.	17	17	0	0	0	G	12142210	C	G	12142210	3	3	27	1	0	0	0	0	1	0	0	0	4511	796	28	3	1739	3	DHTKD1	10	12142210	Missense_Mutation	SNP	C	TCGA-OR-A5K4-01A-11D-A29I-10	4533853	12142210	123392537	167	4578										
MLLT10	8028	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr10	21971185	21971185	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	ttgctgaatgcaatacacaaCggtaagttttattagaatct	7	6	1	2	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	MLLT10-658	NM_001195626	exon12	c.C1698T	p.N566N	ACACAACGGTAAG	.	38	33	39	0	.	0	0	0	0	0	T	21971185	C	T	21971185	2	4	27	1	0	0	0	0	0	0	0	1	9654	550	19	1		1	MLLT10	10	21971185	Silent	SNP	C	TCGA-OR-A5K4-01A-11D-A29I-10	9828975	21971185	113563562	168	4579										
KIAA1217	56243	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr10	24832505	24832505	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	ctgacaatgaggatccagtcGtgtgcctggacaagaaacca	11	10	0	3	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	KIAA1217-98	NM_019590	exon19	c.G4306A	p.V1436M	CCAGTCGTGTGCC	.	135	125	204	0	.	10	1	9	0	0	A	24832505	G	A	24832505	3	1	27	1	0	0	0	0	1	0	0	0	8237	1145	40	1	4380	1	KIAA1217	10	24832505	Missense_Mutation	SNP	G	TCGA-OR-A5K4-01A-11D-A29I-10	2861320	24832505	110702242	169	4580										
KIAA1462	57608	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr10	30315257	30315257	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	gtcggcattcctgaagctcaGgactctcatccgtgacactg	10	13	2	2	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	KIAA1462-72	NM_020848	exon3	c.C3820T	p.L1274L	AGCTCAGGACTCT	.	43	40	53	0	.	2	1	1	0	0	A	30315257	G	A	30315257	2	1	27	1	0	0	0	0	0	0	0	1	8255	991	35	3		3	KIAA1462	10	30315257	Silent	SNP	G	TCGA-OR-A5K4-01A-11D-A29I-10	5482752	30315257	105219490	170	4581										
PARD3	56288	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr10	34400183	34400183	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	ggaggggggcacatcttgccGgaagggccccttgggagggg	21	9	1	0	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	PARD3-92	NM_019619	exon25	c.C3985T	p.R1329W	CTTGCCGGAAGGG	.	64	58	66	0	.	8	0	8	0	0	A	34400183	G	A	34400183	3	1	27	1	0	0	0	0	1	0	0	0	11472	1115	39	1	89	1	PARD3	10	34400183	Missense_Mutation	SNP	G	TCGA-OR-A5K4-01A-11D-A29I-10	4084926	34400183	101134564	171	4582										
FZD8	8325	broad.mit.edu	37	chr10	35929442	35929442	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	gggccgctccgggtacttgaAgcgctccatgtcgataagga	14	11	0	1	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	FZD8-612	NM_031866	exon1	c.T916C	p.F306L	ACTTGAAGCGCTC	.	130	5	166	0	.	1	1	0	0	0	G	35929442	A	G	35929442	3	3	27	1	0	0	0	0	1	0	0	0	6155	72	3	4	1172	4	FZD8	10	35929442	Missense_Mutation	SNP	A	TCGA-OR-A5K4-01A-11D-A29I-10	1529259	35929442	99605305	172	4583										
BMS1	9790	broad.mit.edu	37	chr10	43291975	43291975	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	cttgaacactggtcgaatgcGtcggaaagccattttcggag	12	9	0	1	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	BMS1-93	NM_014753	exon10	c.G1283A	p.R428H	GAATGCGTCGGAA	.	430	11	600	2	.	8	8	0	0	0	A	43291975	G	A	43291975	3	1	27	1	0	0	0	0	1	0	0	0	1473	1145	40	1	1317	1	BMS1	10	43291975	Missense_Mutation	SNP	G	TCGA-OR-A5K4-01A-11D-A29I-10	7362533	43291975	92242772	173	4584										
GDF10	2662	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr10	48428896	48428896	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	cgccctggccggggtttcagCgcccggaaggggctgggcca	18	14	1	0	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	GDF10-650	NM_004962	exon2	c.G990A	p.A330A	TTTCAGCGCCCGG	.	67	64	60	0	.	1	0	1	0	0	T	48428896	C	T	48428896	2	4	27	1	0	0	0	0	0	0	0	1	6331	755	27	1		1	GDF10	10	48428896	Silent	SNP	C	TCGA-OR-A5K4-01A-11D-A29I-10	5136921	48428896	87105851	174	4585										
JMJD1C	221037	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr10	64975209	64975209	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	atttgcttgggcacgtgtatAatggctctaaaaataaccaa	8	7	1	0	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	JMJD1C-275	NM_032776	exon7	c.T829C	p.Y277H	GTGTATAATGGCT	.	59	53	76	0	.	0	0	0	0	0	G	64975209	A	G	64975209	3	3	27	1	0	0	0	0	1	0	0	0	7971	362	13	4	6873	4	JMJD1C	10	64975209	Missense_Mutation	SNP	A	TCGA-OR-A5K4-01A-11D-A29I-10	16546313	64975209	70559538	175	4586										
GRID1	2894	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr10	87379740	87379740	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	tcgtcatccgtcagggctgcGtattccaccacggccacatc	9	16	2	0	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	GRID1-142	NM_017551	exon14	c.C2244T	p.Y748Y	GGCTGCGTATTCC	.	194	166	298	2	.	8	0	8	0	0	A	87379740	G	A	87379740	2	1	27	1	0	0	0	0	0	0	0	1	6792	1140	40	1		1	GRID1	10	87379740	Silent	SNP	G	TCGA-OR-A5K4-01A-11D-A29I-10	22404531	87379740	48155007	176	4587										
MMRN2	79812	hgsc.bcm.edu	37	chr10	88702603	88702603	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	agcgcctgctcctgcagcccGctagcggcgtcctgcagggc	14	17	0	0	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	MMRN2-153	NM_024756	exon6	c.C1938T	p.S646S	CAGCCCGCTAGCG	.	8	7	2	0	.	55	3	52	0	0	A	88702603	G	A	88702603	2	1	27	1	0	0	0	0	0	0	0	1	9699	1078	38	1		1	MMRN2	10	88702603	Silent	SNP	G	TCGA-OR-A5K4-01A-11D-A29I-10	1322863	88702603	46832144	177	4588										
MYOF	26509	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	95103662	95103662	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	ccatttcgataacgatgtccCggcatggtggggcagacaga	13	10	0	2	rs201449564		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	MYOF-93	NM_013451	exon38	c.G4277A	p.R1426Q	ATGTCCCGGCATG	.	67	62	91	1	C|1.000;T|0.000	7	1	6	0	0	T	95103662	C	T	95103662	3	4	27	1	0	0	0	0	1	0	0	0	10117	652	23	1	1976	1	MYOF	10	95103662	Missense_Mutation	SNP	C	TCGA-OR-A5K4-01A-11D-A29I-10	6401059	95103662	40431085	178	4589										
XPNPEP1	7511	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	111633162	111633162	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	gggtcccaaaatgcattgtcCgcgtcacatctgtggtgcca	11	12	2	0	rs201456347		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	XPNPEP1-94	NM_020383	exon16	c.G1415A	p.R472Q	ATTGTCCGCGTCA	.	146	129	222	0	C|0.999;T|0.001	33	1	32	0	0	T	111633162	C	T	111633162	3	4	27	1	0	0	0	0	1	0	0	0	17480	652	23	1	609	1	XPNPEP1	10	111633162	Missense_Mutation	SNP	C	TCGA-OR-A5K4-01A-11D-A29I-10	16529500	111633162	23901585	179	4590										
DMBT1	1755	ucsc.edu	37	chr10	124339362	124339362	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	ctgtggagctgcccccacaaTggctggctcacccacaactg	10	16	1	0	rs202149132	byfrequency	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	DMBT1-494	NM_007329	exon10	c.T948A	p.N316K	CCACAATGGCTGG	.	148	37	225	7	T|0.994;A|0.006	0	0	0	0	0	A	124339362	T	A	124339362	3	1	27	1	0	0	0	0	1	0	0	0	4588	1461	51	5	986	5	DMBT1	10	124339362	Missense_Mutation	SNP	T	TCGA-OR-A5K4-01A-11D-A29I-10	12706200	124339362	11195385	180	4591										
C10orf120	399814	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr10	124458908	124458908	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	gggcaatccgtgggtctgatCtgtagaatttgctccatatc	11	9	2	2	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	C10orf120-91	NM_001010912	exon2	c.G197A	p.R66K	TCTGATCTGTAGA	.	65	18	79	0	.	0	0	0	0	0	T	124458908	C	T	124458908	3	4	27	1	0	0	0	0	1	0	0	0	1594	913	32	3	818	3	C10orf120	10	124458908	Missense_Mutation	SNP	C	TCGA-OR-A5K4-01A-11D-A29I-10	119546	124458908	11075839	181	4592										
TRIM5	85363	broad.mit.edu	37	chr11	5701024	5701024	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	gcaacctcctctgtgaggaaCgtgtggtgaccacggtgctc	13	12	1	2	rs148054117	byfrequency	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	TRIM5-227	NM_033093	exon2	c.G384A	p.T128T	GAGGAACGTGTGG	.	126	5	169	0	C|1.000;T|0.000	10	8	2	0	0	T	5701024	C	T	5701024	2	4	27	1	0	0	0	0	0	0	0	1	16563	523	19	1		1	TRIM5	11	5701024	Silent	SNP	C	TCGA-OR-A5K4-01A-11D-A29I-10		5701024	129305492	182	4593										
NRIP3	56675	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	9009807	9009807	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	ggttggtttccatgaggcgcCtctgcagaatattatgaggt	13	7	1	3	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	NRIP3-186	NM_020645	exon2	c.G197A	p.R66K	AGGCGCCTCTGCA	.	99	88	127	0	.	1	0	1	0	0	T	9009807	C	T	9009807	3	4	27	1	0	0	0	0	1	0	0	0	10683	681	24	3	552	3	NRIP3	11	9009807	Missense_Mutation	SNP	C	TCGA-OR-A5K4-01A-11D-A29I-10	3308783	9009807	125996709	183	4594										
MICAL2	9645	bcgsc.ca	37	chr11	12265542	12265542	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	tgttctgtgcagaataaactActctctaaaggcctgtctca	7	10	3	1	rs2270511	byfrequency	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	MICAL2-92	NM_014632	exon21	c.A2667G	p.L889L	TAAACTACTCTCT	.	114	5	136	0	A|0.826;G|0.174	0	0	0	0	0	G	12265542	A	G	12265542	2	3	27	1	0	0	0	0	0	0	0	1	9598	378	14	4		4	MICAL2	11	12265542	Silent	SNP	A	TCGA-OR-A5K4-01A-11D-A29I-10	3255735	12265542	122740974	184	4595										
PLEKHA7	144100	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	16838355	16838355	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	cccgagcctcaccttgacagCgtggccccgtgccctccttg	10	19	1	1	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	PLEKHA7-227	NM_175058	exon11	c.G1858A	p.A620T	TGACAGCGTGGCC	.	70	63	139	0	.	0	0	0	0	0	T	16838355	C	T	16838355	3	4	27	1	0	0	0	0	1	0	0	0	12090	768	27	1	1559	1	PLEKHA7	11	16838355	Missense_Mutation	SNP	C	TCGA-OR-A5K4-01A-11D-A29I-10	4572813	16838355	118168161	185	4596										
MRGPRX4	117196	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	18195449	18195449	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	tgccgctgaccaggctgtacGtgaccatcctgctcacagtg	11	14	1	2	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	MRGPRX4-91	NM_054032	exon1	c.G646A	p.V216M	CTGTACGTGACCA	.	68	63	89	1	.	0	0	0	0	0	A	18195449	G	A	18195449	3	1	27	1	0	0	0	0	1	0	0	0	9797	1145	40	1	648	1	MRGPRX4	11	18195449	Missense_Mutation	SNP	G	TCGA-OR-A5K4-01A-11D-A29I-10	1357094	18195449	116811067	186	4597										
FNBP4	23360	hgsc.bcm.edu	37	chr11	47788731	47788731	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	ccgcggttgagtccggctcaGtgtcgggttccggctccggg	17	13	1	1	rs112054219		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	FNBP4-91	NM_015308	exon1	c.C110G	p.T37S	GGCTCAGTGTCGG	.	9	7	4	0	.	1	0	1	0	0	C	47788731	G	C	47788731	3	2	27	1	0	0	0	0	1	0	0	0	5986	1029	36	3	3011	3	FNBP4	11	47788731	Missense_Mutation	SNP	G	TCGA-OR-A5K4-01A-11D-A29I-10	29593282	47788731	87217785	187	4598										
SMTNL1	219537	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	57313434	57313434	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	gaaggagaaggcaccagagcGcagggtatcagcccctgctc	14	12	1	2	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	SMTNL1-23	NM_001105565	exon4	c.G998A	p.R333H	CAGAGCGCAGGGT	.	128	58	173	1	.	0	0	0	0	0	A	57313434	G	A	57313434	3	1	27	1	0	0	0	0	1	0	0	0	14850	1087	38	1	1070	1	SMTNL1	11	57313434	Missense_Mutation	SNP	G	TCGA-OR-A5K4-01A-11D-A29I-10	9524703	57313434	77693082	188	4599										
RCOR2	283248	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr11	63679516	63679516	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	ctgcagtgggggtggctgtcGgagcagagtgggagccgtgg	22	7	0	1	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	RCOR2-92	NM_173587	exon12	c.C1393T	p.R465X	GCTGTCGGAGCAG	.	10	10	18	0	.	3	0	3	0	0	A	63679516	G	A	63679516	4	1	27	1	0	0	0	0	0	1	0	0	13218	1124	39	1	182	1	RCOR2	11	63679516	Nonsense_Mutation	SNP	G	TCGA-OR-A5K4-01A-11D-A29I-10	6366082	63679516	71327000	189	4600										
RPS6KA4	8986	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	64127716	64127716	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	catgaaggtgctgcgcaaggCggcgctggtgcagcgcgcca	17	12	0	1	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	RPS6KA4-1036	NM_001006944	exon3	c.C209T	p.A70V	GCAAGGCGGCGCT	.	48	40	32	0	.	8	0	8	0	0	T	64127716	C	T	64127716	3	4	27	1	0	0	0	0	1	0	0	0	13688	768	27	1	219	1	RPS6KA4	11	64127716	Missense_Mutation	SNP	C	TCGA-OR-A5K4-01A-11D-A29I-10	448200	64127716	70878800	190	4601										
GAL3ST3	89792	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	65810719	65810719	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	cggtagtatgcctcgggcgcGcgcaggaaggcctcgagcga	17	12	0	0	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	GAL3ST3-91	NM_033036	exon3	c.C555T	p.R185R	GGGCGCGCGCAGG	.	108	57	42	0	.	0	0	0	0	0	A	65810719	G	A	65810719	2	1	27	1	0	0	0	0	0	0	0	1	6219	1074	38	1		1	GAL3ST3	11	65810719	Silent	SNP	G	TCGA-OR-A5K4-01A-11D-A29I-10	1683003	65810719	69195797	191	4602										
SPTBN2	6712	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	66483354	66483354	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	cagcaggttgcgtccgtcccGgaggtcgctgtacaggtccc	14	14	0	0	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	SPTBN2-155	NM_006946	exon3	c.C256T	p.R86W	CGTCCCGGAGGTC	.	114	54	152	0	.	3	0	3	0	0	A	66483354	G	A	66483354	3	1	27	1	0	0	0	0	1	0	0	0	15157	1115	39	1	7056	1	SPTBN2	11	66483354	Missense_Mutation	SNP	G	TCGA-OR-A5K4-01A-11D-A29I-10	672635	66483354	68523162	192	4603										
PIWIL4	143689	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	94340769	94340769	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	atcgctatgcagatgacttgCaagctcggaggcgagctgtg	14	9	0	2	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	PIWIL4-91	NM_152431	exon14	c.C1803T	p.C601C	GACTTGCAAGCTC	.	46	41	60	1	.	0	0	0	0	0	T	94340769	C	T	94340769	2	4	27	1	0	0	0	0	0	0	0	1	11989	718	25	3		3	PIWIL4	11	94340769	Silent	SNP	C	TCGA-OR-A5K4-01A-11D-A29I-10	27857415	94340769	40665747	193	4604										
ATM	472	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	108098418	108098418	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	aacatgatagagctacagaaCgaaaggtagtaaattactta	8	5	0	3	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	ATM-3419	NM_000051	exon2	c.C67T	p.R23X	ACAGAACGAAAGG	.	119	110	212	0	.	0	0	0	0	0	T	108098418	C	T	108098418	4	4	27	1	0	0	0	0	0	1	0	0	1110	528	19	1	69	1	ATM	11	108098418	Nonsense_Mutation	SNP	C	TCGA-OR-A5K4-01A-11D-A29I-10	13757649	108098418	26908098	194	4605										
SORL1	6653	ucsc.edu;bcgsc.ca	37	chr11	121458770	121458770	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	tggactttgtgtgtaagaacCgccagcagtgcctgttccac	11	11	0	1	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	SORL1-228	NM_003105	exon28	c.C3856T	p.R1286C	AAGAACCGCCAGC	.	53	19	109	2	.	4	2	2	0	0	T	121458770	C	T	121458770	3	4	27	1	0	0	0	0	1	0	0	0	14969	652	23	1	3966	1	SORL1	11	121458770	Missense_Mutation	SNP	C	TCGA-OR-A5K4-01A-11D-A29I-10	13360352	121458770	13547746	195	4606										
CACNA2D4	93589	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr12	1906598	1906598	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	tcttacttctggcagggcccGcactccacgatcccgttggc	10	16	2	0	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	CACNA2D4-23	NM_172364	exon35	c.C3099T	p.C1033C	GGGCCCGCACTCC	.	30	21	25	0	.	0	0	0	0	0	A	1906598	G	A	1906598	2	1	27	1	0	0	0	0	0	0	0	1	2557	1079	38	1		1	CACNA2D4	12	1906598	Silent	SNP	G	TCGA-OR-A5K4-01A-11D-A29I-10		1906598	131945297	196	4607										
NRIP2	83714	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	2937196	2937196	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	ggtccccagctgaggcttttAggacccttttctctaacctg	9	13	1	1	rs200104814		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	NRIP2-187	NM_031474	exon4	c.T596C	p.L199P	GCTTTTAGGACCC	.	38	12	38	0	A|0.999;G|0.001	3	3	0	0	0	G	2937196	A	G	2937196	3	3	27	1	0	0	0	0	1	0	0	0	10682	420	15	4	261	4	NRIP2	12	2937196	Missense_Mutation	SNP	A	TCGA-OR-A5K4-01A-11D-A29I-10	1030598	2937196	130914699	197	4608										
CD9	928	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	6342621	6342621	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	attcgccattgaaatagctgCggccatctggggatattccc	10	11	1	1	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	CD9-91	NM_001769	exon4	c.C317T	p.A106V	TAGCTGCGGCCAT	.	193	98	144	0	.	265	136	129	0	0	T	6342621	C	T	6342621	3	4	27	1	0	0	0	0	1	0	0	0	3052	768	27	1	331	1	CD9	12	6342621	Missense_Mutation	SNP	C	TCGA-OR-A5K4-01A-11D-A29I-10	3405425	6342621	127509274	198	4609										
ABCC9	10060	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	21962829	21962829	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	accatattcttcagctgagcAatttctaaggcttcccagag	7	11	3	2	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	ABCC9-96	NM_005691	exon35	c.T4272C	p.I1424I	CTGAGCAATTTCT	.	35	14	18	0	.	1	1	0	0	0	G	21962829	A	G	21962829	2	3	27	1	0	0	0	0	0	0	0	1	59	126	5	4		4	ABCC9	12	21962829	Silent	SNP	A	TCGA-OR-A5K4-01A-11D-A29I-10	15620208	21962829	111889066	199	4610										
ITPR2	3709	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	26493203	26493203	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	tttcattttgctcactgtcgCcttcattgctaacgagggac	8	11	3	0	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	ITPR2-542	NM_002223	exon56	c.G7916A	p.G2639D	CTGTCGCCTTCAT	.	145	56	110	0	.	22	10	12	0	0	T	26493203	C	T	26493203	3	4	27	1	0	0	0	0	1	0	0	0	7942	739	26	3	197	3	ITPR2	12	26493203	Missense_Mutation	SNP	C	TCGA-OR-A5K4-01A-11D-A29I-10	4530374	26493203	107358692	200	4611										
ITPR2	3709	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	26784944	26784944	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	agcctctactgagtaccatcTgggtcatcatctctcccacc	6	16	5	1	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	ITPR2-542	NM_002223	exon22	c.A2789G	p.Q930R	ACCATCTGGGTCA	.	141	58	139	0	.	0	0	0	0	0	C	26784944	T	C	26784944	3	2	27	1	0	0	0	0	1	0	0	0	7942	1580	55	4	5460	4	ITPR2	12	26784944	Missense_Mutation	SNP	T	TCGA-OR-A5K4-01A-11D-A29I-10	291741	26784944	107066951	201	4612										
MLL2	8085	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	49420173	49420173	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	aagtcagccatctggtgaggCagcagctgtccgatggcgtg	15	10	2	1	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	MLL2-612	NM_003482	exon48	c.G15576A	p.L5192L	GTGAGGCAGCAGC	.	183	86	186	0	.	30	18	12	0	0	T	49420173	C	T	49420173	2	4	27	1	0	0	0	0	0	0	0	1	9649	697	25	3		3	MLL2	12	49420173	Silent	SNP	C	TCGA-OR-A5K4-01A-11D-A29I-10	22635229	49420173	84431722	202	4613										
DHH	50846	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	49483720	49483720	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	gtcggctggacggccccgccGgggagcagcgcccctagcgc	17	17	0	0	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	DHH-710	NM_021044	exon3	c.C1113T	p.P371P	CCCGCCGGGGAGC	.	140	65	102	0	.	16	9	7	0	0	A	49483720	G	A	49483720	2	1	27	1	0	0	0	0	0	0	0	1	4494	1103	39	1		1	DHH	12	49483720	Silent	SNP	G	TCGA-OR-A5K4-01A-11D-A29I-10	63547	49483720	84368175	203	4614										
DHH	50846	bcgsc.ca	37	chr12	49483989	49483989	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	cggtgcaaagtcgcctggcgCgggcgccggccctcgagcgg	18	15	0	0	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	DHH-710	NM_021044	exon3	c.G844A	p.A282T	CTGGCGCGGGCGC	.	121	67	49	2	.	3	3	0	0	0	T	49483989	C	T	49483989	3	4	27	1	0	0	0	0	1	0	0	0	4494	768	27	1	350	1	DHH	12	49483989	Missense_Mutation	SNP	C	TCGA-OR-A5K4-01A-11D-A29I-10	269	49483989	84367906	204	4615										
KRT7	3855	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr12	52627326	52627326	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	ctgcggctggacgccgacccCtccctccagcgggtgcgcca	13	19	0	0	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	KRT7-90	NM_005556	exon1	c.C246A	p.P82P	CGACCCCTCCCTC	.	142	60	90	0	.	0	0	0	0	0	A	52627326	C	A	52627326	2	1	27	1	0	0	0	0	0	0	0	1	8504	668	24	3		3	KRT7	12	52627326	Silent	SNP	C	TCGA-OR-A5K4-01A-11D-A29I-10	3143337	52627326	81224569	205	4616										
KRT77	374454	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	53088535	53088535	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	attgtccatggacaggatgaCgttggtgtcgctgatgtgag	15	6	0	3	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	KRT77-187	NM_175078	exon5	c.G955A	p.V319I	GGATGACGTTGGT	.	151	76	138	0	.	0	0	0	0	0	T	53088535	C	T	53088535	3	4	27	1	0	0	0	0	1	0	0	0	8511	536	19	1	801	1	KRT77	12	53088535	Missense_Mutation	SNP	C	TCGA-OR-A5K4-01A-11D-A29I-10	461209	53088535	80763360	206	4617										
ESYT1	23344	broad.mit.edu	37	chr12	56536719	56536719	+	Splice_Site	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	gcattgttcatggttgccggTgagaccccatccctcctgtc	10	14	1	1	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	ESYT1-95	NM_015292	exon27	c.2987+2T>C	.	TGCCGGTGAGACC	.	109	5	75	0	.	0	0	0	0	0	C	56536719	T	C	56536719	5	2	27	1	0	0	0	0	0	0	1	0	5277	1710	59	4	3125	4	ESYT1	12	56536719	Splice_Site	SNP	T	TCGA-OR-A5K4-01A-11D-A29I-10	3448184	56536719	77315176	207	4618										
GPR182	11318	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr12	57389484	57389484	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	cgcctccccctcctggcagcGttaccagcaccgagtgcggc	11	19	0	0	rs145408449	byfrequency	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	GPR182-500	NM_007264	exon2	c.G491A	p.R164H	GGCAGCGTTACCA	.	177	14	136	0	G|1.000;A|0.000	0	0	0	0	0	A	57389484	G	A	57389484	3	1	27	1	0	0	0	0	1	0	0	0	6697	1145	40	1	493	1	GPR182	12	57389484	Missense_Mutation	SNP	G	TCGA-OR-A5K4-01A-11D-A29I-10	852765	57389484	76462411	208	4619										
LRP1	4035	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	57581075	57581075	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	ggctccgtggaaggcctggcCtatcaccgtggctgggacac	15	13	1	0	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	LRP1-596	NM_002332	exon42	c.C6867A	p.A2289A	CCTGGCCTATCAC	.	269	118	209	1	.	0	0	0	0	0	A	57581075	C	A	57581075	2	1	27	1	0	0	0	0	0	0	0	1	8978	668	24	3		3	LRP1	12	57581075	Silent	SNP	C	TCGA-OR-A5K4-01A-11D-A29I-10	191591	57581075	76270820	209	4620										
LRP1	4035	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	57584685	57584685	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	cccttatcgagaaggacatcCgtacccccaatggcctggcc	9	16	0	1	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	LRP1-596	NM_002332	exon43	c.C7129T	p.R2377C	GACATCCGTACCC	.	178	28	150	0	.	1	1	0	0	0	T	57584685	C	T	57584685	3	4	27	1	0	0	0	0	1	0	0	0	8978	652	23	1	7299	1	LRP1	12	57584685	Missense_Mutation	SNP	C	TCGA-OR-A5K4-01A-11D-A29I-10	3610	57584685	76267210	210	4621										
KIF5A	3798	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	57965871	57965871	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	tgtccacccgaggagacaacGagaaggtccagcgggagctg	15	11	0	2	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	KIF5A-517	NM_004984	exon14	c.G1390A	p.E464K	GACAACGAGAAGG	.	229	109	172	1	.	0	0	0	0	0	A	57965871	G	A	57965871	3	1	27	1	0	0	0	0	1	0	0	0	8326	1059	37	1	1444	1	KIF5A	12	57965871	Missense_Mutation	SNP	G	TCGA-OR-A5K4-01A-11D-A29I-10	381186	57965871	75886024	211	4622										
MON2	23041	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	62940761	62940761	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	gactcaagcagttagaatgcGtgttgcagattctgcagagt	12	7	2	3	rs201327821		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	MON2-514	NM_015026	exon22	c.G2662A	p.V888M	GAATGCGTGTTGC	.	202	91	157	1	G|0.999;A|0.001	10	4	6	0	0	A	62940761	G	A	62940761	3	1	27	1	0	0	0	0	1	0	0	0	9728	1145	40	1	2748	1	MON2	12	62940761	Missense_Mutation	SNP	G	TCGA-OR-A5K4-01A-11D-A29I-10	4974890	62940761	70911134	212	4623										
MDM2	4193	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	69210628	69210628	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	gccagtatattatgactaaaCgattatatgatgagaagcaa	8	5	0	3	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	MDM2-1270	NM_002392	exon4	c.C211T	p.R71X	ACTAAACGATTAT	.	77	26	42	0	.	3	1	2	0	0	T	69210628	C	T	69210628	4	4	27	1	0	0	0	0	0	1	0	0	9441	528	19	1	225	1	MDM2	12	69210628	Nonsense_Mutation	SNP	C	TCGA-OR-A5K4-01A-11D-A29I-10	6269867	69210628	64641267	213	4624										
NAV3	89795	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	78515967	78515967	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	gtcactcgttggcctccagcCcagcatcggttcactctttc	8	16	3	0	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	NAV3-279	NM_014903	exon16	c.C3997T	p.P1333S	TCCAGCCCAGCAT	.	263	45	239	0	.	0	0	0	0	0	T	78515967	C	T	78515967	3	4	27	1	0	0	0	0	1	0	0	0	10213	623	22	3	4059	3	NAV3	12	78515967	Missense_Mutation	SNP	C	TCGA-OR-A5K4-01A-11D-A29I-10	9305339	78515967	55335928	214	4625										
MGAT4C	25834	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	86377312	86377312	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	gatacttacgctttctttgtAaaggtgtggcagctaggtag	12	6	1	0	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	MGAT4C-93	NM_013244	exon6	c.T284C	p.L95S	CTTTGTAAAGGTG	.	105	60	59	0	.	0	0	0	0	0	G	86377312	A	G	86377312	3	3	27	1	0	0	0	0	1	0	0	0	9575	372	13	4	1160	4	MGAT4C	12	86377312	Missense_Mutation	SNP	A	TCGA-OR-A5K4-01A-11D-A29I-10	7861345	86377312	47474583	215	4626										
CEP290	80184	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	88479859	88479859	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	cccgtgtttctagaattattCgaatgttctccttaattttc	5	9	2	1	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	CEP290-96	NM_025114	exon34	c.G4394A	p.R1465Q	ATTATTCGAATGT	.	107	47	82	0	.	2	1	1	0	0	T	88479859	C	T	88479859	3	4	27	1	0	0	0	0	1	0	0	0	3259	884	31	1	3129	1	CEP290	12	88479859	Missense_Mutation	SNP	C	TCGA-OR-A5K4-01A-11D-A29I-10	2102547	88479859	45372036	216	4627										
C12orf42	374470	broad.mit.edu	37	chr12	103699896	103699896	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	ttgttccaaaaatgaactgtTccaagcctgcttgggtgctc	9	10	0	1	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	C12orf42-91	NM_001099336	exon5	c.A487G	p.N163D	AACTGTTCCAAGC	.	103	4	61	0	.	0	0	0	0	0	C	103699896	T	C	103699896	3	2	27	1	0	0	0	0	1	0	0	0	1692	1783	62	4	603	4	C12orf42	12	103699896	Missense_Mutation	SNP	T	TCGA-OR-A5K4-01A-11D-A29I-10	15220037	103699896	30151999	217	4628										
ALDH1L2	160428	ucsc.edu;bcgsc.ca	37	chr12	105464485	105464485	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	acatttagctctgcacccacGgatctgtaggcttctgccac	8	14	3	0	rs74449999	byfrequency	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	ALDH1L2-91	NM_001034173	exon3	c.C291T	p.S97S	ACCCACGGATCTG	.	235	117	168	2	G|0.976;A|0.024	0	0	0	0	0	A	105464485	G	A	105464485	2	1	27	1	0	0	0	0	0	0	0	1	495	1103	39	1		1	ALDH1L2	12	105464485	Silent	SNP	G	TCGA-OR-A5K4-01A-11D-A29I-10	1764589	105464485	28387410	218	4629										
PRDM4	11108	ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	108145670	108145670	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	gaatgctcgcctgcaacaccGtccatcgtaagctcctctgc	8	16	1	0	rs146564582	byfrequency	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	PRDM4-154	NM_012406	exon5	c.C648T	p.D216D	AACACCGTCCATC	.	157	63	115	1	G|0.993;A|0.007	33	17	16	0	0	A	108145670	G	A	108145670	2	1	27	1	0	0	0	0	0	0	0	1	12491	1136	40	1		1	PRDM4	12	108145670	Silent	SNP	G	TCGA-OR-A5K4-01A-11D-A29I-10	2681185	108145670	25706225	219	4630										
RNFT2	84900	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	117273985	117273985	+	Splice_Site	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	tgcttctcccctccctcaaaGaactatggagtccgagccac	7	16	2	1	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	.	NM_001109903	exon10	c.1099-1G>C	.	CTCAAAGAACTAT	.	107	45	91	0	.	0	0	0	0	0	C	117273985	G	C	117273985	5	2	27	1	0	0	0	0	0	0	1	0	13537	956	33	3	1132	3	RNFT2	12	117273985	Splice_Site	SNP	G	TCGA-OR-A5K4-01A-11D-A29I-10	9128315	117273985	16577910	220	4631										
FBXW8	26259	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	117465865	117465865	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	gatccgcgcctatgagtttgCggtggaccagctggccttcc	13	13	0	1	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	FBXW8-229	NM_153348	exon11	c.C1685T	p.A562V	AGTTTGCGGTGGA	.	115	53	88	0	.	0	0	0	0	0	T	117465865	C	T	117465865	3	4	27	1	0	0	0	0	1	0	0	0	5789	768	27	1	1727	1	FBXW8	12	117465865	Missense_Mutation	SNP	C	TCGA-OR-A5K4-01A-11D-A29I-10	191880	117465865	16386030	221	4632										
GCN1L1	10985	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	120613993	120613993	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	catactggctgaggtcaagcGtcactgatgccagcagacta	11	11	2	3	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	GCN1L1-94	NM_006836	exon10	c.C866T	p.T289M	TCAAGCGTCACTG	.	154	23	121	0	.	8	7	1	0	0	A	120613993	G	A	120613993	3	1	27	1	0	0	0	0	1	0	0	0	6319	1145	40	1	7345	1	GCN1L1	12	120613993	Missense_Mutation	SNP	G	TCGA-OR-A5K4-01A-11D-A29I-10	3148128	120613993	13237902	222	4633										
RHOF	54509	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	122217484	122217484	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	agccaccttggcggcctcccGgaagacgtcctccacattct	9	17	1	1	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	RHOF-660	NM_019034	exon5	c.C556T	p.R186W	CCTCCCGGAAGAC	.	170	86	136	2	.	48	26	22	0	0	A	122217484	G	A	122217484	3	1	27	1	0	0	0	0	1	0	0	0	13373	1115	39	1	83	1	RHOF	12	122217484	Missense_Mutation	SNP	G	TCGA-OR-A5K4-01A-11D-A29I-10	1603491	122217484	11634411	223	4634										
VPS37B	79720	broad.mit.edu;bcgsc.ca	37	chr12	123351799	123351799	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	ccacgcgggggggcaggggcGggcactgtaatcctgggtac	19	11	0	0	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	VPS37B-90	NM_024667	exon4	c.C722T	p.P241L	AGGGGCGGGCACT	.	73	45	62	1	.	21	3	18	0	0	A	123351799	G	A	123351799	3	1	27	1	0	0	0	0	1	0	0	0	17244	1116	39	1	139	1	VPS37B	12	123351799	Missense_Mutation	SNP	G	TCGA-OR-A5K4-01A-11D-A29I-10	1134315	123351799	10500096	224	4635										
RNF17	56163	bcgsc.ca	37	chr13	25367282	25367282	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	tacccaccgctagaaaagaaAaaggttgacatgtctgtcct	8	10	1	3	rs1451568	byfrequency	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	RNF17-228	NM_001184993	exon10	c.A1038C	p.K346N	AAAGAAAAAGGTT	.	105	5	123	0	A|0.801;C|0.199	0	0	0	0	0	C	25367282	A	C	25367282	3	2	27	1	0	0	0	0	1	0	0	0	13496	11	1	5	1076	5	RNF17	13	25367282	Missense_Mutation	SNP	A	TCGA-OR-A5K4-01A-11D-A29I-10		25367282	89802596	225	4636										
SLC7A1	6541	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr13	30088674	30088674	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	gcttggtcggcatccagggaCgcctcctcgctgtgccacag	13	15	0	0	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	SLC7A1-90	NM_003045	exon13	c.G1833A	p.A611A	CAGGGACGCCTCC	.	44	43	75	0	.	8	0	8	0	0	T	30088674	C	T	30088674	2	4	27	1	0	0	0	0	0	0	0	1	14727	523	19	1		1	SLC7A1	13	30088674	Silent	SNP	C	TCGA-OR-A5K4-01A-11D-A29I-10	4721392	30088674	85081204	226	4637										
ARL11	115761	ucsc.edu;bcgsc.ca;mdanderson.org	37	chr13	50204724	50204724	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	ctgcccactgttggtttcaaCgtggagcctctgaaagctcc	10	13	2	1	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	ARL11-90	NM_138450	exon2	c.C141T	p.N47N	TTTCAACGTGGAG	.	163	139	201	2	.	4	0	4	0	0	T	50204724	C	T	50204724	2	4	27	1	0	0	0	0	0	0	0	1	927	535	19	1		1	ARL11	13	50204724	Silent	SNP	C	TCGA-OR-A5K4-01A-11D-A29I-10	20116050	50204724	64965154	227	4638										
SLC10A2	6555	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr13	103701788	103701788	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	tccccgtttcaaaagcaaccGttcggcacctaaagaagatg	8	12	1	2	rs145541774		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	SLC10A2-94	NM_000452	exon5	c.C770T	p.T257M	GCAACCGTTCGGC	.	97	8	137	0	G|1.000;A|0.000	0	0	0	0	0	A	103701788	G	A	103701788	3	1	27	1	0	0	0	0	1	0	0	0	14409	1145	40	1	284	1	SLC10A2	13	103701788	Missense_Mutation	SNP	G	TCGA-OR-A5K4-01A-11D-A29I-10	53497064	103701788	11468090	228	4639										
ATP11A	23250	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr13	113516786	113516786	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	gaatgccctgctgcgctggcGcgtgttcatctactggacgc	13	13	2	0	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	ATP11A-138	NM_032189	exon25	c.G2888A	p.R963H	GCTGGCGCGTGTT	.	106	100	161	1	.	3	0	3	0	0	A	113516786	G	A	113516786	3	1	27	1	0	0	0	0	1	0	0	0	1120	1087	38	1	2986	1	ATP11A	13	113516786	Missense_Mutation	SNP	G	TCGA-OR-A5K4-01A-11D-A29I-10	9814998	113516786	1653092	229	4640										
CHD8	57680	ucsc.edu	37	chr14	21859130	21859130	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	ttcccatttctagagttagcTgtctgtactggttccattcc	7	11	2	1	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	CHD8-277	NM_001170629	exon36	c.A7158G	p.T2386T	GTTAGCTGTCTGT	.	38	4	93	0	.	36	36	0	0	0	C	21859130	T	C	21859130	2	2	27	1	0	0	0	0	0	0	0	1	3337	1567	55	4		4	CHD8	14	21859130	Silent	SNP	T	TCGA-OR-A5K4-01A-11D-A29I-10		21859130	85490410	230	4641										
IRF9	10379	hgsc.bcm.edu;bcgsc.ca	37	chr14	24631381	24631381	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	caggcagggcacgctgcaccCgaaaactccggaactgggtg	14	13	0	0	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	IRF9-69	NM_006084	exon2	c.C28T	p.R10X	TGCACCCGAAAAC	.	167	151	267	2	.	24	0	24	0	0	T	24631381	C	T	24631381	4	4	27	1	0	0	0	0	0	1	0	0	7858	644	23	1	30	1	IRF9	14	24631381	Nonsense_Mutation	SNP	C	TCGA-OR-A5K4-01A-11D-A29I-10	2772251	24631381	82718159	231	4642										
RPL10L	140801	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr14	47120739	47120739	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	ttgttggcacaaatacgggcGgcctccagggcttcagaaga	13	10	1	2	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	RPL10L-91	NM_080746	exon1	c.C201T	p.A67A	ACGGGCGGCCTCC	.	93	78	126	1	.	0	0	0	0	0	A	47120739	G	A	47120739	2	1	27	1	0	0	0	0	0	0	0	1	13591	1103	39	1		1	RPL10L	14	47120739	Silent	SNP	G	TCGA-OR-A5K4-01A-11D-A29I-10	22489358	47120739	60228801	232	4643										
NID2	22795	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr14	52478319	52478319	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	ctcccagttccagaccagcaCggctgattgtccgtccagca	9	16	0	2	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	NID2-158	NM_007361	exon17	c.G3503A	p.R1168H	CCAGCACGGCTGA	.	89	70	110	0	.	2	2	0	0	0	T	52478319	C	T	52478319	3	4	27	1	0	0	0	0	1	0	0	0	10444	536	19	1	648	1	NID2	14	52478319	Missense_Mutation	SNP	C	TCGA-OR-A5K4-01A-11D-A29I-10	5357580	52478319	54871221	233	4644										
DACT1	51339	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr14	59113818	59113818	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	gaagaagatcctccgctttcGgtctggctctttgaaactga	10	10	2	4	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	DACT1-291	NM_016651	exon4	c.G2477A	p.R826Q	GCTTTCGGTCTGG	.	50	46	57	0	.	0	0	0	0	0	A	59113818	G	A	59113818	3	1	27	1	0	0	0	0	1	0	0	0	4228	1116	39	1	2491	1	DACT1	14	59113818	Missense_Mutation	SNP	G	TCGA-OR-A5K4-01A-11D-A29I-10	6635499	59113818	48235722	234	4645										
JKAMP	51528	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr14	59970693	59970693	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	acttgagcaagatttgccccTtttggctttggtacctacac	8	11	0	2	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	JKAMP-67	NM_016475	exon7	c.T839C	p.L280P	TGCCCCTTTTGGC	.	108	8	129	0	.	50	50	0	0	0	C	59970693	T	C	59970693	3	2	27	1	0	0	0	0	1	0	0	0	7970	1609	56	4	865	4	JKAMP	14	59970693	Missense_Mutation	SNP	T	TCGA-OR-A5K4-01A-11D-A29I-10	856875	59970693	47378847	235	4646										
NUMB	8650	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr14	73743997	73743997	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	ccagaagattgaccccactcGgtccctggaaccaacaagat	8	14	0	4	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	NUMB-1062	NM_001005743	exon13	c.C1245T	p.T415T	CCACTCGGTCCCT	.	48	34	82	0	.	0	0	0	0	0	A	73743997	G	A	73743997	2	1	27	1	0	0	0	0	0	0	0	1	10780	1103	39	1		1	NUMB	14	73743997	Silent	SNP	G	TCGA-OR-A5K4-01A-11D-A29I-10	13773304	73743997	33605543	236	4647										
CCDC88C	440193	broad.mit.edu	37	chr14	91883084	91883084	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	gagaagaaggtaacttacatTtgcagcataatttggttcaa	9	5	1	2	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	CCDC88C-25	NM_001080414	exon2	c.A159G	p.Q53Q	TTACATTTGCAGC	.	100	4	161	0	.	0	0	0	0	0	C	91883084	T	C	91883084	2	2	27	1	0	0	0	0	0	0	0	1	2871	1838	64	4		4	CCDC88C	14	91883084	Silent	SNP	T	TCGA-OR-A5K4-01A-11D-A29I-10	18139087	91883084	15466456	237	4648										
AHNAK2	113146	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr14	105416412	105416412	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	ttggctcctggagcctcgacGtccacctccacgctgggcag	12	16	0	0	rs187143773	by1000genomes	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	AHNAK2-47	NM_138420	exon7	c.C5376T	p.D1792D	CTCGACGTCCACC	.	186	161	240	3	G|0.999;A|0.001	1	0	1	0	0	A	105416412	G	A	105416412	2	1	27	1	0	0	0	0	0	0	0	1	415	1136	40	1		1	AHNAK2	14	105416412	Silent	SNP	G	TCGA-OR-A5K4-01A-11D-A29I-10	13533328	105416412	1933128	238	4649										
CYFIP1	23191	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	22940826	22940826	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	gcgcttcatttcggagctggCgcgctacagcaacagcgagg	14	12	1	0	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	CYFIP1-99	NM_014608	exon11	c.C1091T	p.A364V	AGCTGGCGCGCTA	.	150	133	249	1	.	11	1	10	0	0	T	22940826	C	T	22940826	3	4	27	1	0	0	0	0	1	0	0	0	4143	768	27	1	1129	1	CYFIP1	15	22940826	Missense_Mutation	SNP	C	TCGA-OR-A5K4-01A-11D-A29I-10		22940826	79590566	239	4650										
PGBD4	161779	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr15	34396376	34396376	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	aaaatttgctgctcccaataCgacaaggatggcaagaagat	9	8	0	2	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	PGBD4-90	NM_152595	exon1	c.C1644T	p.Y548Y	CCAATACGACAAG	.	51	46	94	0	.	2	0	2	0	0	T	34396376	C	T	34396376	2	4	27	1	0	0	0	0	0	0	0	1	11812	547	19	1		1	PGBD4	15	34396376	Silent	SNP	C	TCGA-OR-A5K4-01A-11D-A29I-10	11455550	34396376	68135016	240	4651										
DUOX2	50506	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr15	45394110	45394110	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	cctccttgtcctggaatcccGactcccggaacatagactcc	7	17	0	1	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	DUOX2-95	NM_014080	exon21	c.C2732T	p.S911L	AATCCCGACTCCC	.	192	168	305	0	.	0	0	0	0	0	A	45394110	G	A	45394110	3	1	27	1	0	0	0	0	1	0	0	0	4812	1059	37	1	1970	1	DUOX2	15	45394110	Missense_Mutation	SNP	G	TCGA-OR-A5K4-01A-11D-A29I-10	10997734	45394110	57137282	241	4652										
TLN2	83660	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr15	63063254	63063289	+	In_Frame_Del	DEL	TGCTGGACCAGACCAAGACTCTCGCAGAGTCTGCCT	TGCTGGACCAGACCAAGACTCTCGCAGAGTCTGCCT	-													0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	tcatcagcagcagatgacggTgctggaccagaccaagactc					novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	TGCTGGACCAGACCAAGACTCTCGCAGAGTCTGCCT	TGCTGGACCAGACCAAGACTCTCGCAGAGTCTGCCT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	TLN2-573	NM_015059	exon39	c.5288_5323del	p.1763_1775del	TGACGGTGCTGGA	.	69	27	143	0	.	0	0	0	0	0	-	63063289	TGCTGGACCAGACCAAGACTCTCGCAGAGTCTGCCT	-	63063254	7	5	27	1	0	1	0	1	0	0	0	0	15985	1696	59	0	5442	0	TLN2	15	63063254	In_Frame_Del	DEL	TGCTGGACCAGACCAAGACTCTCGCAGAGTCTGCCT	TCGA-OR-A5K4-01A-11D-A29I-10	17669144	63063254	39468138	242	4653										
IGDCC3	9543	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr15	65622120	65622120	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	aagatgatgcaagtgaccccGatgtggatgccgatgacgat	13	8	0	4	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	IGDCC3-93	NM_004884	exon12	c.C1941T	p.I647I	GACCCCGATGTGG	.	130	39	280	1	.	0	0	0	0	0	A	65622120	G	A	65622120	2	1	27	1	0	0	0	0	0	0	0	1	7589	1048	37	1		1	IGDCC3	15	65622120	Silent	SNP	G	TCGA-OR-A5K4-01A-11D-A29I-10	2558866	65622120	36909272	243	4654										
CYP11A1	1583	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr15	74632008	74632008	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	tctccctgggcctggtgccgCgcagccaagacctctgcccg	12	18	2	1	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	CYP11A1-92	NM_000781	exon6	c.G1077A	p.A359A	GTGCCGCGCAGCC	.	80	73	149	2	.	841	34	805	1	1	T	74632008	C	T	74632008	2	4	27	1	0	0	0	0	0	0	0	1	4150	755	27	1		1	CYP11A1	15	74632008	Silent	SNP	C	TCGA-OR-A5K4-01A-11D-A29I-10	9009888	74632008	27899384	244	4655										
CSPG4	1464	broad.mit.edu	37	chr15	75980201	75980201	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	cgtgggctcatctacggccaCgatactgccaaagaggaggt	13	11	2	1	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	CSPG4-229	NM_001897	exon3	c.G3205A	p.V1069M	CGGCCACGATACT	.	207	6	258	1	.	0	0	0	0	0	T	75980201	C	T	75980201	3	4	27	1	0	0	0	0	1	0	0	0	3966	536	19	1	3795	1	CSPG4	15	75980201	Missense_Mutation	SNP	C	TCGA-OR-A5K4-01A-11D-A29I-10	1348193	75980201	26551191	245	4656										
ADAMTS7	11173	bcgsc.ca	37	chr15	79068601	79068601	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	cgtgagcagatggaccaggcGctccagccagaccagccacc	12	16	0	3	rs189745536		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	ADAMTS7-226	NM_014272	exon11	c.C1635T	p.S545S	CCAGGCGCTCCAG	.	191	17	207	1	G|0.999;A|0.001	0	0	0	0	0	A	79068601	G	A	79068601	2	1	27	1	0	0	0	0	0	0	0	1	271	1078	38	1		1	ADAMTS7	15	79068601	Silent	SNP	G	TCGA-OR-A5K4-01A-11D-A29I-10	3088400	79068601	23462791	246	4657										
RASGRF1	5923	broad.mit.edu	37	chr15	79307707	79307707	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	gtgaccttggaattttcttcAaatgcgttcatcatgagccc	8	10	4	2	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	RASGRF1-662	NM_001145648	exon13	c.T1788C	p.F596F	TTCTTCAAATGCG	.	80	3	125	1	.	2	2	0	0	0	G	79307707	A	G	79307707	2	3	27	1	0	0	0	0	0	0	0	1	13107	127	5	4		4	RASGRF1	15	79307707	Silent	SNP	A	TCGA-OR-A5K4-01A-11D-A29I-10	239106	79307707	23223685	247	4658										
RASGRF1	5923	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr15	79323771	79323771	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	tcctccagtttggacttggcGtagtccaggctgttgcgctc	12	12	0	0	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	RASGRF1-662	NM_001145648	exon8	c.C1233T	p.Y411Y	CTTGGCGTAGTCC	.	86	80	164	1	.	6	0	6	0	0	A	79323771	G	A	79323771	2	1	27	1	0	0	0	0	0	0	0	1	13107	1140	40	1		1	RASGRF1	15	79323771	Silent	SNP	G	TCGA-OR-A5K4-01A-11D-A29I-10	16064	79323771	23207621	248	4659										
MESDC2	23184	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr15	81271798	81271798	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	cgcgaagcatgaagatagcaCggtctgatcccacaatgaac	10	11	1	4	rs185628590		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	MESDC2-90	NM_015154	exon3	c.G467A	p.R156H	ATAGCACGGTCTG	.	71	62	127	0	C|0.999;T|0.000	72	1	71	0	0	T	81271798	C	T	81271798	3	4	27	1	0	0	0	0	1	0	0	0	9509	536	19	1	241	1	MESDC2	15	81271798	Missense_Mutation	SNP	C	TCGA-OR-A5K4-01A-11D-A29I-10	1948027	81271798	21259594	249	4660										
IGF1R	3480	broad.mit.edu	37	chr15	99442820	99442820	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	gtccttcctaaaaaaccttcGcctcatcctaggagaggagc	8	13	1	1	rs148662051		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	IGF1R-1490	NM_000875	exon5	c.G1217A	p.R406H	ACCTTCGCCTCAT	.	102	4	154	1	G|1.000;A|0.000	6	6	0	0	0	A	99442820	G	A	99442820	3	1	27	1	0	0	0	0	1	0	0	0	7592	1087	38	1	1235	1	IGF1R	15	99442820	Missense_Mutation	SNP	G	TCGA-OR-A5K4-01A-11D-A29I-10	18171022	99442820	3088572	250	4661										
PRR25	388199	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	chr16	857545	857545	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	cgagccccgcgtgcaggcgcCgggcctgggcccctgtggcc	17	18	0	0	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	PRR25-135	NM_001013638	exon2	c.C542T	p.P181L	AGGCGCCGGGCCT	.	31	13	12	0	.	0	0	0	0	0	T	857545	C	T	857545	3	4	27	1	0	0	0	0	1	0	0	0	12629	652	23	1	548	1	PRR25	16	857545	Missense_Mutation	SNP	C	TCGA-OR-A5K4-01A-11D-A29I-10		857545	89497208	251	4662										
CASKIN1	57524	broad.mit.edu	37	chr16	2235145	2235145	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	gagcccgcgtgtagggcgtgAcccccgctgccccggccgcc	15	19	0	1	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	CASKIN1-92	NM_020764	exon12	c.T1206G	p.G402G	GGCGTGACCCCCG	.	107	18	48	8	.	10	10	0	0	0	C	2235145	A	C	2235145	2	2	27	1	0	0	0	0	0	0	0	1	2672	262	10	5		5	CASKIN1	16	2235145	Silent	SNP	A	TCGA-OR-A5K4-01A-11D-A29I-10	1377600	2235145	88119608	252	4663										
C16orf59	80178	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr16	2514193	2514193	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	cctggcggccctcaagctgcGagtggctgtgctggaccagc	15	14	1	0	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	C16orf59-90	NM_025108	exon9	c.G1118A	p.R373Q	AGCTGCGAGTGGC	.	155	32	118	0	.	1	0	1	0	0	A	2514193	G	A	2514193	3	1	27	1	0	0	0	0	1	0	0	0	1827	1058	37	1	1152	1	C16orf59	16	2514193	Missense_Mutation	SNP	G	TCGA-OR-A5K4-01A-11D-A29I-10	279048	2514193	87840560	253	4664										
PAQR4	124222	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	3021279	3021279	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	cttgcaccccctgcaggctcCgtgctctatcacctctttat	6	17	3	0	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	PAQR4-68	NM_152341	exon2	c.C288T	p.S96S	AGGCTCCGTGCTC	.	140	67	113	2	.	29	21	8	0	0	T	3021279	C	T	3021279	2	4	27	1	0	0	0	0	0	0	0	1	11466	639	23	1		1	PAQR4	16	3021279	Silent	SNP	C	TCGA-OR-A5K4-01A-11D-A29I-10	507086	3021279	87333474	254	4665										
ZSCAN10	84891	hgsc.bcm.edu;mdanderson.org	37	chr16	3139112	3139112	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	ctagtacagcgtctcgcgggCgtgggtgcgcaggtggcgca	18	11	1	0	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	ZSCAN10-227	NM_032805	exon5	c.G2158A	p.A720T	CGCGGGCGTGGGT	.	80	30	9	0	.	0	0	0	0	0	T	3139112	C	T	3139112	3	4	27	1	0	0	0	0	1	0	0	0	18264	768	27	1	23	1	ZSCAN10	16	3139112	Missense_Mutation	SNP	C	TCGA-OR-A5K4-01A-11D-A29I-10	117833	3139112	87215641	255	4666										
ZNF205	7755	broad.mit.edu	37	chr16	3169354	3169354	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	gcagggagagtccagtggggCgtcccgcagtgcgcgcagga	19	11	0	1	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	ZNF205-90	NM_003456	exon7	c.C693T	p.G231G	GTGGGGCGTCCCG	.	97	5	51	0	.	25	23	2	0	0	T	3169354	C	T	3169354	2	4	27	1	0	0	0	0	0	0	0	1	17801	755	27	1		1	ZNF205	16	3169354	Silent	SNP	C	TCGA-OR-A5K4-01A-11D-A29I-10	30242	3169354	87185399	256	4667										
ZNF205	7755	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr16	3170139	3170139	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	ccacagctcgcacctcaccgCgcaccagcgcacccaccgtg	8	22	1	0	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	ZNF205-90	NM_003456	exon7	c.C1478T	p.A493V	TCACCGCGCACCA	.	385	204	141	0	.	18	11	7	0	0	T	3170139	C	T	3170139	3	4	27	1	0	0	0	0	1	0	0	0	17801	768	27	1	1500	1	ZNF205	16	3170139	Missense_Mutation	SNP	C	TCGA-OR-A5K4-01A-11D-A29I-10	785	3170139	87184614	257	4668										
ZNF213	7760	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr16	3191159	3191159	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	caccagcgcatacacacgggCgagaagcctttcggctgcag	12	14	0	1	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	ZNF213-90	NM_004220	exon6	c.C1191T	p.G397G	CACGGGCGAGAAG	.	281	114	164	0	.	20	11	9	0	0	T	3191159	C	T	3191159	2	4	27	1	0	0	0	0	0	0	0	1	17806	755	27	1		1	ZNF213	16	3191159	Silent	SNP	C	TCGA-OR-A5K4-01A-11D-A29I-10	21020	3191159	87163594	258	4669										
ZNF500	26048	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr16	4802835	4802835	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	gctgaagcctttgccacattCggggcaggtgtacggcttgt	14	10	0	1	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	ZNF500-93	NM_021646	exon6	c.G985A	p.E329K	CACATTCGGGGCA	.	181	82	147	0	.	5	3	2	0	0	T	4802835	C	T	4802835	3	4	27	1	0	0	0	0	1	0	0	0	17985	893	31	1	461	1	ZNF500	16	4802835	Missense_Mutation	SNP	C	TCGA-OR-A5K4-01A-11D-A29I-10	1611676	4802835	85551918	259	4670										
EARS2	124454	broad.mit.edu	37	chr16	23546407	23546407	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	gaggagcaggtgcttggcagTggagacgagccactcagagc	17	9	1	2	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	EARS2-90	NM_001083614	exon4	c.A760C	p.T254P	TGGCAGTGGAGAC	.	256	26	210	18	.	18	17	1	0	0	G	23546407	T	G	23546407	3	3	27	1	0	0	0	0	1	0	0	0	4889	1696	59	5	835	5	EARS2	16	23546407	Missense_Mutation	SNP	T	TCGA-OR-A5K4-01A-11D-A29I-10	18743572	23546407	66808346	260	4671										
GTF3C1	2975	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	27483225	27483225	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	gaacgtggtccttgtactccCgatagaggcggaaagtctgc	13	10	1	1	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	GTF3C1-94	NM_001520	exon30	c.G4370A	p.R1457Q	TACTCCCGATAGA	.	136	61	128	2	.	40	26	14	0	0	T	27483225	C	T	27483225	3	4	27	1	0	0	0	0	1	0	0	0	6893	652	23	1	1991	1	GTF3C1	16	27483225	Missense_Mutation	SNP	C	TCGA-OR-A5K4-01A-11D-A29I-10	3936818	27483225	62871528	261	4672										
ZNF785	146540	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr16	30594258	30594258	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	ggggcagctgtagggcttctCgcccgtgtgcttgcgctggt	17	11	1	0	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	ZNF785-91	NM_152458	exon3	c.G841A	p.E281K	GCTTCTCGCCCGT	.	183	67	147	0	.	17	10	7	0	0	T	30594258	C	T	30594258	3	4	27	1	0	0	0	0	1	0	0	0	18194	893	31	1	380	1	ZNF785	16	30594258	Missense_Mutation	SNP	C	TCGA-OR-A5K4-01A-11D-A29I-10	3111033	30594258	59760495	262	4673										
STX1B	112755	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr16	31004545	31004545	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	gttccacgttgtactcgatgCggtcaatcatctctccctgc	8	14	3	0	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	STX1B-90	NM_052874	exon9	c.G692A	p.R231H	TCGATGCGGTCAA	.	247	108	262	0	.	0	0	0	0	0	T	31004545	C	T	31004545	3	4	27	1	0	0	0	0	1	0	0	0	15381	768	27	1	182	1	STX1B	16	31004545	Missense_Mutation	SNP	C	TCGA-OR-A5K4-01A-11D-A29I-10	410287	31004545	59350208	263	4674										
PRSS8	5652	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr16	31143831	31143831	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	tgcggctcctcaggcttggcGtcgatgttgtacaggcagtt	14	10	1	0	rs148214625		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	.	NM_002773	exon5	c.C624T	p.D208D	CTTGGCGTCGATG	.	281	128	282	2	G|0.999;A|0.001	114	112	2	0	0	A	31143831	G	A	31143831	2	1	27	1	0	0	0	0	0	0	0	1	12667	1136	40	1		1	PRSS8	16	31143831	Silent	SNP	G	TCGA-OR-A5K4-01A-11D-A29I-10	139286	31143831	59210922	264	4675										
VPS35	55737	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr16	46697064	46697064	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	tcttctggcatttcttttccCatttgtcatcctaaaacaag	4	11	4	0	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	VPS35-90	NM_018206	exon14	c.G1658A	p.W553X	TTTTCCCATTTGT	.	73	31	26	0	.	0	0	0	0	0	T	46697064	C	T	46697064	4	4	27	1	0	0	0	0	0	1	0	0	17241	595	21	3	748	3	VPS35	16	46697064	Nonsense_Mutation	SNP	C	TCGA-OR-A5K4-01A-11D-A29I-10	15553233	46697064	43657689	265	4676										
GPT2	84706	broad.mit.edu	37	chr16	46934689	46934690	+	Frame_Shift_Ins	INS	-	-	G													0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	ggatcctgcaggcttgtggcINSgggaacagcctgggtgaggc					novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	GPT2-92	NM_133443	exon4	c.429_430insG	p.G143fs	TTGTGGCGGGAAC	.	166	9	105	0	.	0	0	0	0	0	G	46934690	-	G	46934689	7	5	27	1	0	1	1	0	0	0	0	0	6759	755	27	0	439	0	GPT2	16	46934689	Frame_Shift_Ins	INS	-	TCGA-OR-A5K4-01A-11D-A29I-10	237625	46934689	43420064	266	4677										
PHKB	5257	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	47644802	47644802	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	atgtcccactaaaggatcaaCgtaacgtgagcatgaggttt	10	8	1	2	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	PHKB-154	NM_000293	exon14	c.C1429T	p.R477C	GATCAACGTAACG	.	167	70	185	2	.	75	38	37	0	0	T	47644802	C	T	47644802	3	4	27	1	0	0	0	0	1	0	0	0	11874	536	19	1	1542	1	PHKB	16	47644802	Missense_Mutation	SNP	C	TCGA-OR-A5K4-01A-11D-A29I-10	710113	47644802	42709951	267	4678										
CCDC102A	92922	hgsc.bcm.edu	37	chr16	57562804	57562804	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	ggcagtgcagtccgaccaccGgcgcatggtcttctccatct	11	15	3	0	rs12935069		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	CCDC102A-91	NM_033212	exon2	c.C286T	p.R96W	ACCACCGGCGCAT	.	8	8	0	0	G|0.001;A|0.999	0	0	0	0	0	A	57562804	G	A	57562804	3	1	27	1	0	0	0	0	1	0	0	0	2742	1115	39	1	1398	1	CCDC102A	16	57562804	Missense_Mutation	SNP	G	TCGA-OR-A5K4-01A-11D-A29I-10	9918002	57562804	32791949	268	4679										
KATNB1	10300	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	57775658	57775658	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	tgctgggcaaagcctccgggCggctgctggctacaggcggg	18	12	0	0	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	KATNB1-90	NM_005886	exon3	c.C100T	p.R34W	TCCGGGCGGCTGC	.	189	24	173	0	.	44	34	10	0	0	T	57775658	C	T	57775658	3	4	27	1	0	0	0	0	1	0	0	0	8008	759	27	1	106	1	KATNB1	16	57775658	Missense_Mutation	SNP	C	TCGA-OR-A5K4-01A-11D-A29I-10	212854	57775658	32579095	269	4680										
CDH16	1014	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	66944294	66944294	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	cgatcaagccatggtcttggCggggtgtgcagaggtattgg	17	7	2	1	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	CDH16-93	NM_004062	exon15	c.G2036A	p.R679H	TCTTGGCGGGGTG	.	177	93	130	2	.	0	0	0	0	0	T	66944294	C	T	66944294	3	4	27	1	0	0	0	0	1	0	0	0	3107	768	27	1	469	1	CDH16	16	66944294	Missense_Mutation	SNP	C	TCGA-OR-A5K4-01A-11D-A29I-10	9168636	66944294	23410459	270	4681										
CDH16	1014	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr16	66946627	66946627	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	caggatgttctggcctgctcGgagtgggagcacccccagcg	15	13	1	0	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	CDH16-93	NM_004062	exon10	c.C1222T	p.R408X	CTGCTCGGAGTGG	.	183	79	157	0	.	0	0	0	0	0	A	66946627	G	A	66946627	4	1	27	1	0	0	0	0	0	1	0	0	3107	1124	39	1	1303	1	CDH16	16	66946627	Nonsense_Mutation	SNP	G	TCGA-OR-A5K4-01A-11D-A29I-10	2333	66946627	23408126	271	4682										
CDH3	1001	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr16	68732181	68732181	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	agggcagcggctccgacgccGcgtccctgagctccctcacc	12	19	1	1	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	CDH3-950	NM_001793	exon16	c.G2368A	p.A790T	GACGCCGCGTCCC	.	221	13	143	0	.	2	2	0	0	0	A	68732181	G	A	68732181	3	1	27	1	0	0	0	0	1	0	0	0	3117	1087	38	1	2430	1	CDH3	16	68732181	Missense_Mutation	SNP	G	TCGA-OR-A5K4-01A-11D-A29I-10	1785554	68732181	21622572	272	4683										
COG8	84342	bcgsc.ca;mdanderson.org	37	chr16	69373210	69373210	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	gtcttgtagttagcgaaggcCaagtcgcgcgtctgctgcag	14	10	2	0	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	COG8-91	NM_032382	exon1	c.G246A	p.L82L	GAAGGCCAAGTCG	.	72	38	30	1	.	11	3	8	0	0	T	69373210	C	T	69373210	2	4	27	1	0	0	0	0	0	0	0	1	3670	593	21	3		3	COG8	16	69373210	Silent	SNP	C	TCGA-OR-A5K4-01A-11D-A29I-10	641029	69373210	20981543	273	4684										
HPR	3250	ucsc.edu;bcgsc.ca	37	chr16	72108240	72108240	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	ctatgtggagcacttgtttcGctaccagtgtaagaactact	9	9	0	1	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	HPR-515	NM_020995	exon3	c.G149A	p.R50H	TGTTTCGCTACCA	.	1231	546	932	3	.	1	0	1	0	0	A	72108240	G	A	72108240	3	1	27	1	0	0	0	0	1	0	0	0	7358	1087	38	1	159	1	HPR	16	72108240	Missense_Mutation	SNP	G	TCGA-OR-A5K4-01A-11D-A29I-10	2735030	72108240	18246513	274	4685										
GLG1	2734	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	74491779	74491779	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	cacagagacttacgacgcccGcggccaggggtgatggctgc	15	13	0	2	rs148460697	byfrequency	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	GLG1-136	NM_001145667	exon24	c.C3258T	p.R1086R	ACGCCCGCGGCCA	.	251	47	191	0	G|1.000;A|0.000	1	1	0	0	0	A	74491779	G	A	74491779	2	1	27	1	0	0	0	0	0	0	0	1	6456	1074	38	1		1	GLG1	16	74491779	Silent	SNP	G	TCGA-OR-A5K4-01A-11D-A29I-10	2383539	74491779	15862974	275	4686										
KARS	3735	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	75665701	75665701	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	tcaaatcaatcccctcattcCggaactggcgtccaatttca	5	14	4	0	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	KARS-92	NM_001130089	exon9	c.G1052A	p.R351Q	TCATTCCGGAACT	.	234	108	206	1	.	197	101	96	0	0	T	75665701	C	T	75665701	3	4	27	1	0	0	0	0	1	0	0	0	8001	652	23	1	853	1	KARS	16	75665701	Missense_Mutation	SNP	C	TCGA-OR-A5K4-01A-11D-A29I-10	1173922	75665701	14689052	276	4687										
FOXC2	2303	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	chr16	86602305	86602305	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	caacgtgcgggagatgttcaActcccaccggctggggattg	14	11	1	1	rs138612549		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	FOXC2-226	NM_005251	exon1	c.A1364G	p.N455S	TGTTCAACTCCCA	.	196	100	154	0	A|0.998;G|0.002	1	1	0	0	0	G	86602305	A	G	86602305	3	3	27	1	0	0	0	0	1	0	0	0	6014	43	2	4	1366	4	FOXC2	16	86602305	Missense_Mutation	SNP	A	TCGA-OR-A5K4-01A-11D-A29I-10	10936604	86602305	3752448	277	4688										
ANKRD11	29123	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr16	89346959	89346959	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	gcggcagagtggagggggtcCgcggggcagaaacgctttgg	21	8	0	2	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	ANKRD11-139	NM_001256183	exon9	c.G5991A	p.A1997A	GGGGTCCGCGGGG	.	70	34	29	0	.	15	7	8	0	0	T	89346959	C	T	89346959	2	4	27	1	0	0	0	0	0	0	0	1	639	639	23	1		1	ANKRD11	16	89346959	Silent	SNP	C	TCGA-OR-A5K4-01A-11D-A29I-10	2744654	89346959	1007794	278	4689										
SPG7	6687	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	89611117	89611117	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	aaccgagctgacattttggaCggtgctctgatgaggccagg	14	9	1	3	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	SPG7-226	NM_003119	exon10	c.C1386T	p.D462D	TTTGGACGGTGCT	.	283	127	200	1	.	100	52	48	0	0	T	89611117	C	T	89611117	2	4	27	1	0	0	0	0	0	0	0	1	15081	535	19	1		1	SPG7	16	89611117	Silent	SNP	C	TCGA-OR-A5K4-01A-11D-A29I-10	264158	89611117	743636	279	4690										
PRPF8	10594	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	1561614	1561614	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	tgaggaacagctgccctgtgCgtgggttgaagatgaagatg	16	6	0	5	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	PRPF8-525	NM_006445	exon34	c.G5438A	p.R1813H	CCTGTGCGTGGGT	.	172	161	324	0	.	118	1	117	0	0	T	1561614	C	T	1561614	3	4	27	1	0	0	0	0	1	0	0	0	12607	768	27	1	1609	1	PRPF8	17	1561614	Missense_Mutation	SNP	C	TCGA-OR-A5K4-01A-11D-A29I-10		1561614	79633596	280	4691										
SGSM2	9905	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	2265553	2265553	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	aaggtcgtgcaatacctggcGgaaaactgcaggtgaccgcc	13	11	0	1	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	SGSM2-68	NM_001098509	exon4	c.G447A	p.A149A	CCTGGCGGAAAAC	.	70	66	131	0	.	0	0	0	0	0	A	2265553	G	A	2265553	2	1	27	1	0	0	0	0	0	0	0	1	14258	1103	39	1		1	SGSM2	17	2265553	Silent	SNP	G	TCGA-OR-A5K4-01A-11D-A29I-10	703939	2265553	78929657	281	4692										
ATP2A3	489	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	3840801	3840801	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	gccctcctccaccgcagccaCgatggaggcaaagttgtcat	10	15	1	0	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	ATP2A3-156	NM_174956	exon15	c.G2230A	p.V744M	CAGCCACGATGGA	.	144	136	314	1	.	1	1	0	0	0	T	3840801	C	T	3840801	3	4	27	1	0	0	0	0	1	0	0	0	1139	536	19	1	1008	1	ATP2A3	17	3840801	Missense_Mutation	SNP	C	TCGA-OR-A5K4-01A-11D-A29I-10	1575248	3840801	77354409	282	4693										
AIPL1	23746	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	6329050	6329050	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	cgcaccgccttctgcatggaCggctccagctccagcacttt	9	17	1	0	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	AIPL1-90	NM_014336	exon6	c.G885A	p.P295P	CATGGACGGCTCC	.	60	56	76	1	.	0	0	0	0	0	T	6329050	C	T	6329050	2	4	27	1	0	0	0	0	0	0	0	1	436	523	19	1		1	AIPL1	17	6329050	Silent	SNP	C	TCGA-OR-A5K4-01A-11D-A29I-10	2488249	6329050	74866160	283	4694										
KIAA0753	9851	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	6528100	6528100	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	gctggaggacgtagagcattCgggcagagcgagcagcttgc	17	9	0	2	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	KIAA0753-90	NM_014804	exon4	c.G800A	p.R267Q	AGCATTCGGGCAG	.	62	58	87	1	.	0	0	0	0	0	T	6528100	C	T	6528100	3	4	27	1	0	0	0	0	1	0	0	0	8212	884	31	1	2167	1	KIAA0753	17	6528100	Missense_Mutation	SNP	C	TCGA-OR-A5K4-01A-11D-A29I-10	199050	6528100	74667110	284	4695										
TP53	7157	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	7574017	7574017	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	gctctcggaacatctcgaagCgctcacgcccacggatctgc	10	16	4	0	rs121912664		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	TP53-70225	NM_000546	exon10	c.G1010A	p.R337H	TCGAAGCGCTCAC	.	97	91	162	1	.	6	0	6	0	0	T	7574017	C	T	7574017	3	4	27	1	0	0	0	0	1	0	0	0	16419	768	27	1	179	1	TP53	17	7574017	Missense_Mutation	SNP	C	TCGA-OR-A5K4-01A-11D-A29I-10	1045917	7574017	73621193	285	4696										
KDM6B	23135	bcgsc.ca	37	chr17	7751926	7751926	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	aggagaagaagccaccaccaGccctaccaccaccaccgcct	7	19	0	2	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	KDM6B-205	NM_001080424	exon11	c.G2320T	p.A774S	CCACCAGCCCTAC	.	23	4	38	0	.	1	1	0	0	0	T	7751926	G	T	7751926	3	4	27	1	0	0	0	0	1	0	0	0	8159	971	34	3	2350	3	KDM6B	17	7751926	Missense_Mutation	SNP	G	TCGA-OR-A5K4-01A-11D-A29I-10	177909	7751926	73443284	286	4697										
LRRC48	83450	ucsc.edu;bcgsc.ca	37	chr17	17900841	17900841	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	gcctgaaacagcaggagaagCggaaaacagagcttgacacc	12	10	0	4	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	LRRC48-46	NM_031294	exon9	c.C892T	p.R298W	GAGAAGCGGAAAA	.	209	186	299	3	.	0	0	0	0	0	T	17900841	C	T	17900841	3	4	27	1	0	0	0	0	1	0	0	0	9032	759	27	1	918	1	LRRC48	17	17900841	Missense_Mutation	SNP	C	TCGA-OR-A5K4-01A-11D-A29I-10	10148915	17900841	63294369	287	4698										
EVPLL	645027	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr17	18286644	18286644	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	gtaaaccagctggaggaggaCggcaagcgcatggtggagct	17	8	0	0	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	.	NM_001145127	exon8	c.C732T	p.D244D	GGAGGACGGCAAG	.	45	44	60	0	.	0	0	0	0	0	T	18286644	C	T	18286644	2	4	27	1	0	0	0	0	0	0	0	1	5306	535	19	1		1	EVPLL	17	18286644	Silent	SNP	C	TCGA-OR-A5K4-01A-11D-A29I-10	385803	18286644	62908566	288	4699										
MYO18A	399687	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	27419408	27419408	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	aatctgcaggtgcaggtcttCgatctccacctccattgctt	8	13	3	0	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	MYO18A-22	NM_078471	exon34	c.G5140A	p.E1714K	GGTCTTCGATCTC	.	66	57	120	0	.	9	0	9	0	0	T	27419408	C	T	27419408	3	4	27	1	0	0	0	0	1	0	0	0	10093	893	31	1	1060	1	MYO18A	17	27419408	Missense_Mutation	SNP	C	TCGA-OR-A5K4-01A-11D-A29I-10	9132764	27419408	53775802	289	4700										
PIP4K2B	8396	ucsc.edu	37	chr17	36936800	36936800	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	gtcgtaggtggtgaggaaacGcgtgccacaccgaccctggc	15	12	0	1	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	PIP4K2B-266	NM_003559	exon4	c.C412T	p.R138C	GGAAACGCGTGCC	.	106	4	136	0	.	22	20	2	0	0	A	36936800	G	A	36936800	3	1	27	1	0	0	0	0	1	0	0	0	11966	1087	38	1	866	1	PIP4K2B	17	36936800	Missense_Mutation	SNP	G	TCGA-OR-A5K4-01A-11D-A29I-10	9517392	36936800	44258410	290	4701										
KRT12	3859	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	39018841	39018841	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	agaggaatcagttgactgtgCttgtgatttggagtctgtca	13	5	3	3	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	KRT12-91	NM_000223	exon7	c.G1363A	p.A455T	ACTGTGCTTGTGA	.	78	73	129	0	.	0	0	0	0	0	T	39018841	C	T	39018841	3	4	27	1	0	0	0	0	1	0	0	0	8470	797	28	3	129	3	KRT12	17	39018841	Missense_Mutation	SNP	C	TCGA-OR-A5K4-01A-11D-A29I-10	2082041	39018841	42176369	291	4702										
KRT32	3882	bcgsc.ca	37	chr17	39619193	39619193	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	tctgccgctccaggtcagccCggatctcagccagctgggcc	12	17	3	0	rs11078993	byfrequency	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	KRT32-90	NM_002278	exon6	c.G1106A	p.R369Q	TCAGCCCGGATCT	.	119	7	154	0	C|0.935;T|0.065	0	0	0	0	0	T	39619193	C	T	39619193	3	4	27	1	0	0	0	0	1	0	0	0	8489	652	23	1	248	1	KRT32	17	39619193	Missense_Mutation	SNP	C	TCGA-OR-A5K4-01A-11D-A29I-10	600352	39619193	41576017	292	4703										
PTRF	284119	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	40574938	40574938	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	gtctacggccccgatgatttTgtccaggaggctcagcacca	11	13	2	1	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	PTRF-153	NM_012232	exon1	c.A178G	p.K60E	TGATTTTGTCCAG	.	137	125	191	0	.	112	5	107	0	0	C	40574938	T	C	40574938	3	2	27	1	0	0	0	0	1	0	0	0	12850	1821	63	4	1002	4	PTRF	17	40574938	Missense_Mutation	SNP	T	TCGA-OR-A5K4-01A-11D-A29I-10	955745	40574938	40620272	293	4704										
HSD17B1	3292	hgsc.bcm.edu	37	chr17	40706906	40706906	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	cagaggacgaggccgggcgcGgtgcggtgggggaccctgag	22	10	0	2	rs605059	byfrequency	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	HSD17B1-90	NM_000413	exon6	c.G937A	p.G313S	GGGCGCGGTGCGG	.	7	7	4	0	G|0.505;A|0.495	0	0	0	0	0	A	40706906	G	A	40706906	3	1	27	1	0	0	0	0	1	0	0	0	7399	1116	39	1	959	1	HSD17B1	17	40706906	Missense_Mutation	SNP	G	TCGA-OR-A5K4-01A-11D-A29I-10	131968	40706906	40488304	294	4705										
ASB16	92591	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	42254580	42254580	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	gcactgctggactacggggcGcagccagtgcgccctgaggt	16	13	0	1	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	ASB16-227	NM_080863	exon3	c.G1044A	p.A348A	CGGGGCGCAGCCA	.	33	11	37	0	.	6	5	1	0	0	A	42254580	G	A	42254580	2	1	27	1	0	0	0	0	0	0	0	1	1021	1087	38	1		1	ASB16	17	42254580	Silent	SNP	G	TCGA-OR-A5K4-01A-11D-A29I-10	1547674	42254580	38940630	295	4706										
NGFR	4804	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	47590175	47590175	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	ggacacctggcggcacctggCgggcgagctgggctaccagc	17	14	0	0	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	NGFR-947	NM_002507	exon6	c.C1088T	p.A363V	ACCTGGCGGGCGA	.	204	95	258	0	.	0	0	0	0	0	T	47590175	C	T	47590175	3	4	27	1	0	0	0	0	1	0	0	0	10425	768	27	1	1110	1	NGFR	17	47590175	Missense_Mutation	SNP	C	TCGA-OR-A5K4-01A-11D-A29I-10	5335595	47590175	33605035	296	4707										
ABCC3	8714	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	48741343	48741343	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	accaactcagtcaaacgtgcGtccactgtgggggaaattgt	11	10	2	0	rs191057975		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	ABCC3-93	NM_003786	exon10	c.G1209A	p.A403A	ACGTGCGTCCACT	.	104	93	298	0	G|0.999;A|0.001	2	0	2	0	0	A	48741343	G	A	48741343	2	1	27	1	0	0	0	0	0	0	0	1	54	1132	40	1		1	ABCC3	17	48741343	Silent	SNP	G	TCGA-OR-A5K4-01A-11D-A29I-10	1151168	48741343	32453867	297	4708										
KIAA0195	9772	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	73484865	73484865	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	cgagcacatcgtcctggagcCgggagacctcttccccccct	10	18	1	1	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	KIAA0195-91	NM_014738	exon7	c.C638T	p.P213L	TGGAGCCGGGAGA	.	49	40	57	0	.	17	1	15	1	0	T	73484865	C	T	73484865	3	4	27	1	0	0	0	0	1	0	0	0	8181	652	23	1	660	1	KIAA0195	17	73484865	Missense_Mutation	SNP	C	TCGA-OR-A5K4-01A-11D-A29I-10	24743522	73484865	7710345	298	4709										
DNAH17	8632	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	76570839	76570839	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	gtccacgggtgtggggctgaTgtcgccgtaaaggagccggg	19	9	0	1	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	DNAH17-142	NM_173628	exon2	c.A301G	p.I101V	GGCTGATGTCGCC	.	140	130	220	0	.	0	0	0	0	0	C	76570839	T	C	76570839	3	2	27	1	0	0	0	0	1	0	0	0	4612	1464	51	4	13407	4	DNAH17	17	76570839	Missense_Mutation	SNP	T	TCGA-OR-A5K4-01A-11D-A29I-10	3085974	76570839	4624371	299	4710										
PCYT2	5833	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	79865456	79865456	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	aaaactgtctgcatactcccGgtactcagaggacatctcct	7	13	3	1	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	PCYT2-68	NM_002861	exon6	c.C511T	p.R171W	ACTCCCGGTACTC	.	128	112	193	1	.	50	0	50	0	0	A	79865456	G	A	79865456	3	1	27	1	0	0	0	0	1	0	0	0	11641	1115	39	1	748	1	PCYT2	17	79865456	Missense_Mutation	SNP	G	TCGA-OR-A5K4-01A-11D-A29I-10	3294617	79865456	1329754	300	4711										
FASN	2194	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	80039618	80039618	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	cagcacctccaggcaggacgCcatgcgctggggcagcgtgc	15	15	0	0	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	FASN-90	NM_004104	exon37	c.G6265A	p.A2089T	AGGACGCCATGCG	.	115	46	200	0	.	37	19	18	0	0	T	80039618	C	T	80039618	3	4	27	1	0	0	0	0	1	0	0	0	5702	739	26	3	1298	3	FASN	17	80039618	Missense_Mutation	SNP	C	TCGA-OR-A5K4-01A-11D-A29I-10	174162	80039618	1155592	301	4712										
LAMA3	3909	ucsc.edu;bcgsc.ca	37	chr18	21456302	21456302	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	gatcataaaggcttgtatacCggacggtgtgttccctgcaa	11	9	1	0	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	LAMA3-100	NM_001127717	exon39	c.C5043T	p.T1681T	GTATACCGGACGG	.	169	162	221	3	.	0	0	0	0	0	T	21456302	C	T	21456302	2	4	27	1	0	0	0	0	0	0	0	1	8629	639	23	1		1	LAMA3	18	21456302	Silent	SNP	C	TCGA-OR-A5K4-01A-11D-A29I-10		21456302	56620946	302	4713										
SETBP1	26040	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr18	42531274	42531274	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	agaaagttggaaagctcggcGtgttggataagaagaccatc	13	6	0	3	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	SETBP1-155	NM_015559	exon4	c.G1969A	p.V657M	CTCGGCGTGTTGG	.	101	43	134	2	.	0	0	0	0	0	A	42531274	G	A	42531274	3	1	27	1	0	0	0	0	1	0	0	0	14164	1145	40	1	2172	1	SETBP1	18	42531274	Missense_Mutation	SNP	G	TCGA-OR-A5K4-01A-11D-A29I-10	21074972	42531274	35545974	303	4714										
TXNL1	9352	broad.mit.edu	37	chr18	54305668	54305668	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	cccgacgggcttcacccccaCcatcctcacagagagcccgg	9	20	2	1	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	TXNL1-90	NM_004786	exon1	c.G4A	p.V2M	CCCCCACCATCCT	.	45	3	59	0	.	40	40	0	0	0	T	54305668	C	T	54305668	3	4	27	1	0	0	0	0	1	0	0	0	16842	507	18	3	897	3	TXNL1	18	54305668	Missense_Mutation	SNP	C	TCGA-OR-A5K4-01A-11D-A29I-10	11774394	54305668	23771580	304	4715										
SERPINB8	5271	broad.mit.edu;bcgsc.ca	37	chr18	61649031	61649031	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	tgctgaagacactgaagagtGcaggaagcatataaatgact	11	6	0	5	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	SERPINB8-226	NM_001031848	exon4	c.G383T	p.C128F	AAGAGTGCAGGAA	.	60	5	74	0	.	7	7	0	0	0	T	61649031	G	T	61649031	3	4	27	1	0	0	0	0	1	0	0	0	14142	1319	46	3	393	3	SERPINB8	18	61649031	Missense_Mutation	SNP	G	TCGA-OR-A5K4-01A-11D-A29I-10	7343363	61649031	16428217	305	4716										
MADCAM1	8174	bcgsc.ca	37	chr19	501714	501714	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	gcctcccgacaccacctcccCggagtctcccgacaccacct	6	23	1	0	rs78071082	bycluster;byfrequency	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	MADCAM1-90	NM_130760	exon4	c.C713A	p.P238Q	CCTCCCCGGAGTC	.	138	8	179	3	A|0.000;C|1.000;T|0.000	0	0	0	0	0	A	501714	C	A	501714	3	1	27	1	0	0	0	0	1	0	0	0	9179	652	23	2	727	2	MADCAM1	19	501714	Missense_Mutation	SNP	C	TCGA-OR-A5K4-01A-11D-A29I-10		501714	58627269	306	4717										
LPPR3	0	broad.mit.edu	37	chr19	814548	814548	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	cccgcggcgatggcaaaggcGaagaccaggatgggcttcag	16	11	1	1	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	.	NM_024888	exon6	c.C801T	p.F267F	AAAGGCGAAGACC	.	55	4	86	0	.	0	0	0	0	0	A	814548	G	A	814548	2	1	27	1	0	0	0	0	0	0	0	1	8953	1049	37	1		1	LPPR3	19	814548	Silent	SNP	G	TCGA-OR-A5K4-01A-11D-A29I-10	312834	814548	58314435	307	4718										
AP3D1	8943	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	2129403	2129403	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	ggccagggacaggtagttctTagggttgcgtctggccagct	16	9	2	0	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	AP3D1-90	NM_001261826	exon7	c.A646G	p.K216E	AGTTCTTAGGGTT	.	213	196	306	1	.	24	2	22	0	0	C	2129403	T	C	2129403	3	2	27	1	0	0	0	0	1	0	0	0	746	1763	61	4	3069	4	AP3D1	19	2129403	Missense_Mutation	SNP	T	TCGA-OR-A5K4-01A-11D-A29I-10	1314855	2129403	56999580	308	4719										
TJP3	27134	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	3734400	3734400	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	accaccccggcatgctcagcGgagccccgaggccagccaga	12	18	1	1	rs200603772	alternate_allele	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	TJP3-92	NM_001267561	exon8	c.G980A	p.R327Q	CTCAGCGGAGCCC	.	47	47	61	0	G|0.999;T|0.000	0	0	0	0	0	A	3734400	G	A	3734400	3	1	27	1	0	0	0	0	1	0	0	0	15968	1116	39	1	1078	1	TJP3	19	3734400	Missense_Mutation	SNP	G	TCGA-OR-A5K4-01A-11D-A29I-10	1604997	3734400	55394583	309	4720										
PLIN3	10226	ucsc.edu	37	chr19	4852250	4852250	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	ggccaccgtgtccttggcgcTagacaccatctcttgggccc	11	16	1	1	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	PLIN3-90	NM_001164189	exon5	c.A412G	p.S138G	TGGCGCTAGACAC	.	40	4	67	0	.	148	148	0	0	0	C	4852250	T	C	4852250	3	2	27	1	0	0	0	0	1	0	0	0	12120	1522	53	4	908	4	PLIN3	19	4852250	Missense_Mutation	SNP	T	TCGA-OR-A5K4-01A-11D-A29I-10	1117850	4852250	54276733	310	4721										
KDM4B	23030	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	5143983	5143983	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	tgtccccatccccagaaatgCgtgtactgccggaagcggat	11	13	0	1	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	KDM4B-226	NM_015015	exon19	c.C2556T	p.C852C	GAAATGCGTGTAC	.	43	39	107	0	.	0	0	0	0	0	T	5143983	C	T	5143983	2	4	27	1	0	0	0	0	0	0	0	1	8150	776	27	1		1	KDM4B	19	5143983	Silent	SNP	C	TCGA-OR-A5K4-01A-11D-A29I-10	291733	5143983	53985000	311	4722										
SLC25A23	79085	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	6452332	6452332	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	tgcccacagacctcgtagacGgccaggtcgatgcccgcata	11	15	0	2	rs148491192		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	SLC25A23-92	NM_024103	exon8	c.C1062T	p.A354A	GTAGACGGCCAGG	.	64	64	136	0	G|1.000;A|0.000	2	0	2	0	0	A	6452332	G	A	6452332	2	1	27	1	0	0	0	0	0	0	0	1	14521	1103	39	1		1	SLC25A23	19	6452332	Silent	SNP	G	TCGA-OR-A5K4-01A-11D-A29I-10	1308349	6452332	52676651	312	4723										
KANK3	256949	hgsc.bcm.edu	37	chr19	8399628	8399628	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	accccgcgctggtgctccagActggcgcgcagcagctctag	13	16	1	1	rs710949	byfrequency	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	KANK3-90	NM_198471	exon3	c.T1083C	p.S361S	CTCCAGACTGGCG	.	9	7	0	0	A|0.411;G|0.589	0	0	0	0	0	G	8399628	A	G	8399628	2	3	27	1	0	0	0	0	0	0	0	1	7999	272	10	4		4	KANK3	19	8399628	Silent	SNP	A	TCGA-OR-A5K4-01A-11D-A29I-10	1947296	8399628	50729355	313	4724										
MUC16	94025	broad.mit.edu	37	chr19	9076759	9076759	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	ggccggggtgctgtccatggTactcatacccacttctgggt	13	12	2	0	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	MUC16-566	NM_024690	exon3	c.A10687G	p.T3563A	CCATGGTACTCAT	.	346	8	502	1	.	0	0	0	0	0	C	9076759	T	C	9076759	3	2	27	1	0	0	0	0	1	0	0	0	10001	1638	57	4	33164	4	MUC16	19	9076759	Missense_Mutation	SNP	T	TCGA-OR-A5K4-01A-11D-A29I-10	677131	9076759	50052224	314	4725										
TNPO2	30000	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	12814290	12814290	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	ccaggtggcgttgttgcagaCggagatgaactctgggttca	15	8	2	3	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	TNPO2-227	NM_013433	exon19	c.G2161A	p.V721I	TGCAGACGGAGAT	.	135	125	245	0	.	74	0	74	0	0	T	12814290	C	T	12814290	3	4	27	1	0	0	0	0	1	0	0	0	16373	536	19	1	556	1	TNPO2	19	12814290	Missense_Mutation	SNP	C	TCGA-OR-A5K4-01A-11D-A29I-10	3737531	12814290	46314693	315	4726										
PRDX2	7001	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	12910730	12910730	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	cagccgcagagcctcatccaCggagcgtcccacaggcaaat	10	16	1	1	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	PRDX2-90	NM_005809	exon5	c.T454A	p.F152I	CATCCACGGAGCG	.	117	106	191	1	.	738	1	736	0	1	T	12910730	C	T	12910730	3	4	27	1	0	0	0	0	1	0	0	0	12497	536	19	1	150	1	PRDX2	19	12910730	Missense_Mutation	SNP	C	TCGA-OR-A5K4-01A-11D-A29I-10	96440	12910730	46218253	316	4727										
RLN3	117579	broad.mit.edu	37	chr19	14139168	14139168	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	cttcacctgcgggggctcccGgtggagacgatcagacatcc	13	14	2	2	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	RLN3-90	NM_080864	exon1	c.G152T	p.R51L	GCTCCCGGTGGAG	.	124	4	201	0	.	0	0	0	0	0	T	14139168	G	T	14139168	3	4	27	1	0	0	0	0	1	0	0	0	13428	1116	39	2	154	2	RLN3	19	14139168	Missense_Mutation	SNP	G	TCGA-OR-A5K4-01A-11D-A29I-10	1228438	14139168	44989815	317	4728										
CYP4F11	57834	broad.mit.edu;bcgsc.ca	37	chr19	16045121	16045121	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	tgtaggtccaggccaggacgCgggccaggagccaggagcct	17	12	0	0	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	CYP4F11-91	NM_001128932	exon2	c.G98A	p.R33H	AGGACGCGGGCCA	.	137	10	192	1	.	0	0	0	0	0	T	16045121	C	T	16045121	3	4	27	1	0	0	0	0	1	0	0	0	4192	768	27	1	1524	1	CYP4F11	19	16045121	Missense_Mutation	SNP	C	TCGA-OR-A5K4-01A-11D-A29I-10	1905953	16045121	43083862	318	4729										
NR2F6	2063	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	17343368	17343368	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	tactgcgcccgcacatactcGgtgagggccacctgcgcctt	11	16	0	1	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	NR2F6-186	NM_005234	exon4	c.C1008T	p.T336T	ATACTCGGTGAGG	.	31	29	26	0	.	46	0	46	0	0	A	17343368	G	A	17343368	2	1	27	1	0	0	0	0	0	0	0	1	10658	1103	39	1		1	NR2F6	19	17343368	Silent	SNP	G	TCGA-OR-A5K4-01A-11D-A29I-10	1298247	17343368	41785615	319	4730										
NR2C2AP	126382	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	19313147	19313147	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	aggggcaggatatctgaagcGagttgttgtcctcagggtag	16	6	2	1	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	NR2C2AP-23	NM_176880	exon4	c.C296T	p.S99L	TGAAGCGAGTTGT	.	80	69	150	0	.	1	0	1	0	0	A	19313147	G	A	19313147	3	1	27	1	0	0	0	0	1	0	0	0	10653	1059	37	1	131	1	NR2C2AP	19	19313147	Missense_Mutation	SNP	G	TCGA-OR-A5K4-01A-11D-A29I-10	1969779	19313147	39815836	320	4731										
CHST8	64377	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	34263477	34263477	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	tctttgtccgcgagcccttcGagaggctggtgtccgccttc	12	14	1	1	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	CHST8-156	NM_001127895	exon5	c.G784A	p.E262K	CCCTTCGAGAGGC	.	139	127	218	0	.	0	0	0	0	0	A	34263477	G	A	34263477	3	1	27	1	0	0	0	0	1	0	0	0	3416	1059	37	1	794	1	CHST8	19	34263477	Missense_Mutation	SNP	G	TCGA-OR-A5K4-01A-11D-A29I-10	14950330	34263477	24865506	321	4732										
RYR1	6261	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	38931501	38931501	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	ctggagcccactagcaacgcGcaggtctgtgcaggagggag	16	11	1	0	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	RYR1-100	NM_001042723	exon2	c.G162A	p.A54A	CAACGCGCAGGTC	.	121	103	191	2	.	0	0	0	0	0	A	38931501	G	A	38931501	2	1	27	1	0	0	0	0	0	0	0	1	13803	1074	38	1		1	RYR1	19	38931501	Silent	SNP	G	TCGA-OR-A5K4-01A-11D-A29I-10	4668024	38931501	20197482	322	4733										
FCGBP	8857	broad.mit.edu	37	chr19	40376473	40376473	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	agcccagggagcaggtgtccGcacagagctcgtagtgactg	15	11	0	2	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	FCGBP-98	NM_003890	exon25	c.C11831T	p.A3944V	GTGTCCGCACAGA	.	504	18	729	1	.	1	1	0	0	0	A	40376473	G	A	40376473	3	1	27	1	0	0	0	0	1	0	0	0	5797	1087	38	1	4434	1	FCGBP	19	40376473	Missense_Mutation	SNP	G	TCGA-OR-A5K4-01A-11D-A29I-10	1444972	40376473	18752510	323	4734										
AXL	558	ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	41726567	41726567	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	aggctgaagaaagtcccttcGtgggcaacccagggaatatc	12	10	0	2	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	AXL-1403	NM_021913	exon2	c.G112A	p.V38M	CCCTTCGTGGGCA	.	134	129	191	2	.	0	0	0	0	0	A	41726567	G	A	41726567	3	1	27	1	0	0	0	0	1	0	0	0	1239	1145	40	1	118	1	AXL	19	41726567	Missense_Mutation	SNP	G	TCGA-OR-A5K4-01A-11D-A29I-10	1350094	41726567	17402416	324	4735										
TMEM145	284339	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr19	42821906	42821906	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	acacgtatgagtcgccggccGgctacgggctcattggactg	14	12	1	1	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	TMEM145-90	NM_173633	exon12	c.G946A	p.G316S	CCGGCCGGCTACG	.	144	8	178	0	.	0	0	0	0	0	A	42821906	G	A	42821906	3	1	27	1	0	0	0	0	1	0	0	0	16096	1116	39	1	992	1	TMEM145	19	42821906	Missense_Mutation	SNP	G	TCGA-OR-A5K4-01A-11D-A29I-10	1095339	42821906	16307077	325	4736										
IRGQ	126298	bcgsc.ca	37	chr19	44096816	44096816	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	gtcctccgggcttaacgcagCggcccgctctgagtcgccac	12	17	1	1	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	IRGQ-92	NM_001007561	exon3	c.G1234A	p.A412T	ACGCAGCGGCCCG	.	51	44	95	3	.	1	0	1	0	0	T	44096816	C	T	44096816	3	4	27	1	0	0	0	0	1	0	0	0	7860	768	27	1	641	1	IRGQ	19	44096816	Missense_Mutation	SNP	C	TCGA-OR-A5K4-01A-11D-A29I-10	1274910	44096816	15032167	326	4737										
ZNF225	7768	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	44636010	44636010	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	gattttatacaaattcacaaCgttattctcaccagagagcg	6	9	2	1	rs200370101		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	.	NM_013362	exon5	c.C1243T	p.R415C	TCACAACGTTATT	.	74	65	128	0	.	1	0	1	0	0	T	44636010	C	T	44636010	3	4	27	1	0	0	0	0	1	0	0	0	17816	536	19	1	1257	1	ZNF225	19	44636010	Missense_Mutation	SNP	C	TCGA-OR-A5K4-01A-11D-A29I-10	539194	44636010	14492973	327	4738										
APOE	348	hgsc.bcm.edu	37	chr19	45411941	45411941	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	gcgcggacatggaggacgtgTgcggccgcctggtgcagtac	18	11	0	0	rs429358	byfrequency	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	APOE-90	NM_000041	exon4	c.T388C	p.C130R	GACGTGTGCGGCC	.	15	13	3	0	T|0.861;C|0.139	630	3	625	0	2	C	45411941	T	C	45411941	3	2	27	1	0	0	0	0	1	0	0	0	802	1696	59	4	398	4	APOE	19	45411941	Missense_Mutation	SNP	T	TCGA-OR-A5K4-01A-11D-A29I-10	775931	45411941	13717042	328	4739										
TULP2	7288	ucsc.edu	37	chr19	49399726	49399726	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	ctcctcccgcagacaagagcGccaaagccacggggaagcgt	12	15	0	2	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	TULP2-93	NM_003323	exon4	c.C172T	p.R58C	AAGAGCGCCAAAG	.	42	4	54	0	.	0	0	0	0	0	A	49399726	G	A	49399726	3	1	27	1	0	0	0	0	1	0	0	0	16812	1087	38	1	1430	1	TULP2	19	49399726	Missense_Mutation	SNP	G	TCGA-OR-A5K4-01A-11D-A29I-10	3987785	49399726	9729257	329	4740										
ZNF473	25888	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	50549939	50549939	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	gcctgagtgctgagcttgtcCgccaccagagaattcacact	10	13	1	3	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	ZNF473-91	NM_015428	exon5	c.C2239T	p.R747C	CTTGTCCGCCACC	.	76	71	88	0	.	10	0	10	0	0	T	50549939	C	T	50549939	3	4	27	1	0	0	0	0	1	0	0	0	17968	652	23	1	2253	1	ZNF473	19	50549939	Missense_Mutation	SNP	C	TCGA-OR-A5K4-01A-11D-A29I-10	1150213	50549939	8579044	330	4741										
ASPDH	554235	hgsc.bcm.edu	37	chr19	51015404	51015404	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	tggccgcacccaggaggctcTgccagaaggccgtgacggtg	16	13	1	2	rs12977172	byfrequency	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	ASPDH-90	NM_001114598	exon6	c.A797G	p.Q266R	AGGCTCTGCCAGA	.	8	8	7	0	T|0.228;C|0.772	0	0	0	0	0	C	51015404	T	C	51015404	3	2	27	1	0	0	0	0	1	0	0	0	1052	1580	55	4	62	4	ASPDH	19	51015404	Missense_Mutation	SNP	T	TCGA-OR-A5K4-01A-11D-A29I-10	465465	51015404	8113579	331	4742										
TMC4	147798	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	54669182	54669182	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	gtacaagatgatgcgctggcGcagccgcacgtggacgtccc	14	13	0	2	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	TMC4-91	NM_001145303	exon6	c.C934T	p.R312C	GCTGGCGCAGCCG	.	86	46	161	0	.	4	2	2	0	0	A	54669182	G	A	54669182	3	1	27	1	0	0	0	0	1	0	0	0	16024	1087	38	1	1244	1	TMC4	19	54669182	Missense_Mutation	SNP	G	TCGA-OR-A5K4-01A-11D-A29I-10	3653778	54669182	4459801	332	4743										
NLRP5	126206	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	56544918	56544918	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	cccattgcaggtttagaaatGcacagattacccctggtgtg	10	10	0	2	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	NLRP5-162	NM_153447	exon9	c.G2458A	p.A820T	AGAAATGCACAGA	.	137	126	192	0	.	0	0	0	0	0	A	56544918	G	A	56544918	3	1	27	1	0	0	0	0	1	0	0	0	10509	1319	46	3	2492	3	NLRP5	19	56544918	Missense_Mutation	SNP	G	TCGA-OR-A5K4-01A-11D-A29I-10	1875736	56544918	2584065	333	4744										
ZNF135	7694	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	58579725	58579725	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	gcacccacctcactcagcacCggaggatccacacaggagag	10	16	2	1	rs138910447		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	ZNF135-91	NM_007134	exon4	c.C1945T	p.R649W	CAGCACCGGAGGA	.	106	98	195	0	C|1.000;T|0.000	4	0	4	0	0	T	58579725	C	T	58579725	3	4	27	1	0	0	0	0	1	0	0	0	17762	643	23	1	2076	1	ZNF135	19	58579725	Missense_Mutation	SNP	C	TCGA-OR-A5K4-01A-11D-A29I-10	2034807	58579725	549258	334	4745										
ZNF324	25799	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr19	58982784	58982784	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	agcaccagcgcatccacagcGgcgagacgccctacgcgtgc	12	17	0	1	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	ZNF324-90	NM_014347	exon4	c.G925A	p.G309S	CACAGCGGCGAGA	.	304	252	158	1	.	4	2	2	0	0	A	58982784	G	A	58982784	3	1	27	1	0	0	0	0	1	0	0	0	17881	1116	39	1	935	1	ZNF324	19	58982784	Missense_Mutation	SNP	G	TCGA-OR-A5K4-01A-11D-A29I-10	403059	58982784	146199	335	4746										
MZF1	7593	broad.mit.edu	37	chr19	59082627	59082627	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	gaagcaccggaaacgcaggcGtgcagcttcagggcctgggt	16	11	1	0	rs199500324	alternate_allele	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	MZF1-91	NM_198055	exon2	c.C130T	p.R44C	GCAGGCGTGCAGC	.	94	4	115	0	G|0.999;C|0.000	12	12	0	0	0	A	59082627	G	A	59082627	3	1	27	1	0	0	0	0	1	0	0	0	10136	1145	40	1	2094	1	MZF1	19	59082627	Missense_Mutation	SNP	G	TCGA-OR-A5K4-01A-11D-A29I-10	99843	59082627	46356	336	4747										
SLC4A11	83959	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr20	3210042	3210042	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	tgagggagaaggcgagcaccGcgatgggcagggcgcagtcg	20	9	0	2	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	SLC4A11-91	NM_001174090	exon15	c.C1928T	p.A643V	AGCACCGCGATGG	.	127	27	135	0	.	1	1	0	0	0	A	3210042	G	A	3210042	3	1	27	1	0	0	0	0	1	0	0	0	14687	1087	38	1	852	1	SLC4A11	20	3210042	Missense_Mutation	SNP	G	TCGA-OR-A5K4-01A-11D-A29I-10		3210042	59815478	337	4748										
ADAM33	80332	hgsc.bcm.edu	37	chr20	3654433	3654433	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	tggggccgctgcgcccacagCccccggcgccactgcaggaa	14	18	0	0	rs2271511	byfrequency	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	ADAM33-291	NM_025220	exon9	c.G864A	p.G288G	CCACAGCCCCCGG	.	8	5	0	0	C|0.751;T|0.249	0	0	0	0	0	T	3654433	C	T	3654433	2	4	27	1	0	0	0	0	0	0	0	1	250	726	26	3		3	ADAM33	20	3654433	Silent	SNP	C	TCGA-OR-A5K4-01A-11D-A29I-10	444391	3654433	59371087	338	4749										
SIGLEC1	6614	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr20	3673211	3673211	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	cgggagctgcgggtgccctgGgcatcctgggcctggcaaga	18	12	0	1	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	SIGLEC1-167	NM_023068	exon15	c.C3987A	p.A1329A	GCCCTGGGCATCC	.	56	23	69	0	.	0	0	0	0	0	T	3673211	G	T	3673211	2	4	27	1	0	0	0	0	0	0	0	1	14340	1219	43	3		3	SIGLEC1	20	3673211	Silent	SNP	G	TCGA-OR-A5K4-01A-11D-A29I-10	18778	3673211	59352309	339	4750										
PLCB1	23236	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr20	8609053	8609053	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	catctcccatttgaatctcgTggctttccaagaagaagtgg	9	10	2	3	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	PLCB1-297	NM_015192	exon4	c.T359G	p.F120C	ATCTCGTGGCTTT	.	219	83	181	0	.	2	2	0	0	0	G	8609053	T	G	8609053	3	3	27	1	0	0	0	0	1	0	0	0	12056	1696	59	5	373	5	PLCB1	20	8609053	Missense_Mutation	SNP	T	TCGA-OR-A5K4-01A-11D-A29I-10	4935842	8609053	54416467	340	4751										
ISM1	140862	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr20	13269302	13269302	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	gcgtgcactgcaacagaatcGaggacctgtgaccgtccaaa	11	12	0	2	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	ISM1-68	NM_080826	exon4	c.G759A	p.S253S	AGAATCGAGGACC	.	233	104	153	0	.	9	6	3	0	0	A	13269302	G	A	13269302	2	1	27	1	0	0	0	0	0	0	0	1	7881	1045	37	1		1	ISM1	20	13269302	Silent	SNP	G	TCGA-OR-A5K4-01A-11D-A29I-10	4660249	13269302	49756218	341	4752										
RRBP1	6238	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr20	17622479	17622479	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	gtttgctcttggcgacagccGcatcttcctgttctgtggcc	11	13	3	0	rs146531264	byfrequency	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	RRBP1-92	NM_004587	exon5	c.C848T	p.A283V	ACAGCCGCATCTT	.	151	14	142	0	G|0.999;A|0.001	304	279	24	1	0	A	17622479	G	A	17622479	3	1	27	1	0	0	0	0	1	0	0	0	13713	1087	38	1	2169	1	RRBP1	20	17622479	Missense_Mutation	SNP	G	TCGA-OR-A5K4-01A-11D-A29I-10	4353177	17622479	45403041	342	4753										
RBBP9	10741	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr20	18471080	18471080	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	cccccaagtctgatgtgtacGcagacactaatacaatagca	7	12	1	2	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	RBBP9-227	NM_006606	exon4	c.C293T	p.A98V	GTGTACGCAGACA	.	248	116	223	0	.	16	7	9	0	0	A	18471080	G	A	18471080	3	1	27	1	0	0	0	0	1	0	0	0	13141	1087	38	1	275	1	RBBP9	20	18471080	Missense_Mutation	SNP	G	TCGA-OR-A5K4-01A-11D-A29I-10	848601	18471080	44554440	343	4754										
CST9	128822	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr20	23586287	23586287	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	ccctccatgaactcaggacgCgcaacagcctgtaggcatgc	10	15	1	1	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	CST9-91	NM_001008693	exon1	c.G215A	p.R72H	AGGACGCGCAACA	.	253	107	182	1	.	0	0	0	0	0	T	23586287	C	T	23586287	3	4	27	1	0	0	0	0	1	0	0	0	3985	768	27	1	272	1	CST9	20	23586287	Missense_Mutation	SNP	C	TCGA-OR-A5K4-01A-11D-A29I-10	5115207	23586287	39439233	344	4755										
NCOA6	23054	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr20	33329666	33329666	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	tgggaagtttgttaggatccGaaggctgcccatcctttttg	12	8	0	0	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	NCOA6-292	NM_014071	exon11	c.C4394T	p.S1465L	GGATCCGAAGGCT	.	212	113	175	1	.	49	24	25	0	0	A	33329666	G	A	33329666	3	1	27	1	0	0	0	0	1	0	0	0	10262	1059	37	1	1817	1	NCOA6	20	33329666	Missense_Mutation	SNP	G	TCGA-OR-A5K4-01A-11D-A29I-10	9743379	33329666	29695854	345	4756										
ACTR5	79913	hgsc.bcm.edu	37	chr20	37377139	37377139	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	aagatggcggcgaacgtgttCccgttccgcgacgcccgtgc	14	14	0	1	rs2254105	byfrequency	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	ACTR5-90	NM_024855	exon1	c.C18T	p.F6F	CGTGTTCCCGTTC	.	24	13	0	0	C|0.769;T|0.231	1	0	1	0	0	T	37377139	C	T	37377139	2	4	27	1	0	0	0	0	0	0	0	1	215	854	30	3		3	ACTR5	20	37377139	Silent	SNP	C	TCGA-OR-A5K4-01A-11D-A29I-10	4047473	37377139	25648381	346	4757										
ADA	100	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr20	43251246	43251246	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	caccgaatgactgcatgctcCgtgtccggcttccaggcacc	10	16	0	1	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	ADA-653	NM_000022	exon9	c.G828A	p.T276T	ATGCTCCGTGTCC	.	199	84	155	0	.	7	5	2	0	0	T	43251246	C	T	43251246	2	4	27	1	0	0	0	0	0	0	0	1	230	639	23	1		1	ADA	20	43251246	Silent	SNP	C	TCGA-OR-A5K4-01A-11D-A29I-10	5874107	43251246	19774274	347	4758										
ZBP1	81030	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr20	56186832	56186832	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	gggccctcggacgggacgccGtggagcctcatctcattgct	14	14	2	0	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	ZBP1-228	NM_030776	exon6	c.C825T	p.H275H	GACGCCGTGGAGC	.	136	26	86	0	.	0	0	0	0	0	A	56186832	G	A	56186832	2	1	27	1	0	0	0	0	0	0	0	1	17558	1136	40	1		1	ZBP1	20	56186832	Silent	SNP	G	TCGA-OR-A5K4-01A-11D-A29I-10	12935586	56186832	6838688	348	4759										
SLMO2	51012	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr20	57611597	57611597	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	gctgaggctaactcctttcaCggtaattatggcttcttgtg	10	9	2	1	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	SLMO2-45	NM_016045	exon5	c.G394A	p.V132M	CTTTCACGGTAAT	.	236	105	158	0	.	50	28	22	0	0	T	57611597	C	T	57611597	3	4	27	1	0	0	0	0	1	0	0	0	14786	536	19	1	198	1	SLMO2	20	57611597	Missense_Mutation	SNP	C	TCGA-OR-A5K4-01A-11D-A29I-10	1424765	57611597	5413923	349	4760										
SYCP2	10388	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr20	58452496	58452496	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	ttcttgttcacactctgattCtgaatttgagagatctttat	6	7	5	4	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	SYCP2-525	NM_014258	exon32	c.G3094A	p.E1032K	CTGATTCTGAATT	.	43	20	22	0	.	4	2	2	0	0	T	58452496	C	T	58452496	3	4	27	1	0	0	0	0	1	0	0	0	15469	922	32	3	1550	3	SYCP2	20	58452496	Missense_Mutation	SNP	C	TCGA-OR-A5K4-01A-11D-A29I-10	840899	58452496	4573024	350	4761										
CDH4	1002	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr20	60348149	60348149	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	cccagcaccagaacgccaacGggctgaggcggcgcaaacgg	14	15	0	2	rs143400273	byfrequency	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	CDH4-282	NM_001794	exon4	c.G487A	p.G163R	GCCAACGGGCTGA	.	298	145	124	0	G|0.999;A|0.001	9	5	4	0	0	A	60348149	G	A	60348149	3	1	27	1	0	0	0	0	1	0	0	0	3118	1116	39	1	501	1	CDH4	20	60348149	Missense_Mutation	SNP	G	TCGA-OR-A5K4-01A-11D-A29I-10	1895653	60348149	2677371	351	4762										
LAMA5	3911	broad.mit.edu;bcgsc.ca	37	chr20	60891828	60891828	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	ccaggccctgccgcaccaccGtctgtggatgccagggcaga	13	16	1	1	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	LAMA5-93	NM_005560	exon57	c.C7655T	p.T2552M	ACCACCGTCTGTG	.	155	8	113	1	.	1	1	0	0	0	A	60891828	G	A	60891828	3	1	27	1	0	0	0	0	1	0	0	0	8631	1159	40	1	3528	1	LAMA5	20	60891828	Missense_Mutation	SNP	G	TCGA-OR-A5K4-01A-11D-A29I-10	543679	60891828	2133692	352	4763										
RTEL1	51750	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr20	62297419	62297419	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	ttgaggacttggtcaagagcGgaagcaagcacaggtgagac	15	7	1	3	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	RTEL1-44	NM_032957	exon7	c.G673A	p.G225R	AAGAGCGGAAGCA	.	145	65	101	0	.	0	0	0	0	0	A	62297419	G	A	62297419	3	1	27	1	0	0	0	0	1	0	0	0	13755	1117	39	1	623	1	RTEL1	20	62297419	Missense_Mutation	SNP	G	TCGA-OR-A5K4-01A-11D-A29I-10	1405591	62297419	728101	353	4764										
RTEL1	51750	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr20	62309673	62309673	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	gctgttgagctgcctggagaCgacagcggtgtcaccaagcc	14	12	1	2	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	RTEL1-44	NM_032957	exon12	c.C1083T	p.D361D	TGGAGACGACAGC	.	113	37	80	0	.	19	9	10	0	0	T	62309673	C	T	62309673	2	4	27	1	0	0	0	0	0	0	0	1	13755	535	19	1		1	RTEL1	20	62309673	Silent	SNP	C	TCGA-OR-A5K4-01A-11D-A29I-10	12254	62309673	715847	354	4765										
GRIK1	2897	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr21	31062246	31062246	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	aatagactgcacagcactgaCggaggagctatgggaagggc	15	8	0	2	rs142436130		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	GRIK1-137	NM_175611	exon3	c.G346A	p.V116I	CACTGACGGAGGA	.	114	14	163	0	C|1.000;T|0.000	0	0	0	0	0	T	31062246	C	T	31062246	3	4	27	1	0	0	0	0	1	0	0	0	6794	536	19	1	2630	1	GRIK1	21	31062246	Missense_Mutation	SNP	C	TCGA-OR-A5K4-01A-11D-A29I-10		31062246	17067649	355	4766										
RRP1B	23076	ucsc.edu;bcgsc.ca	37	chr21	45107797	45107797	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	cagggacctagagggtccccGacaggtggagcccaactcct	13	14	0	1	rs143773984	byfrequency	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	RRP1B-91	NM_015056	exon13	c.G1542A	p.P514P	GTCCCCGACAGGT	.	105	94	175	2	G|1.000;A|0.000	7	0	7	0	0	A	45107797	G	A	45107797	2	1	27	1	0	0	0	0	0	0	0	1	13723	1045	37	1		1	RRP1B	21	45107797	Silent	SNP	G	TCGA-OR-A5K4-01A-11D-A29I-10	14045551	45107797	3022098	356	4767										
COL6A2	1292	broad.mit.edu;bcgsc.ca	37	chr21	47539706	47539706	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	cgcctgttctctgcaggggcGcaggggagaccccggcacca	15	15	1	1	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	COL6A2-515	NM_058175	exon15	c.G1274A	p.R425H	AGGGGCGCAGGGG	.	121	6	167	0	.	0	0	0	0	0	A	47539706	G	A	47539706	3	1	27	1	0	0	0	0	1	0	0	0	3706	1087	38	1	1328	1	COL6A2	21	47539706	Missense_Mutation	SNP	G	TCGA-OR-A5K4-01A-11D-A29I-10	2431909	47539706	590189	357	4768										
TUBA8	51807	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr22	18609364	18609364	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	gtgctttcatggtggacaacGaagccatctatgacatctgc	10	10	3	1	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	TUBA8-90	NM_018943	exon4	c.G619A	p.E207K	GACAACGAAGCCA	.	144	123	281	0	.	2	0	2	0	0	A	18609364	G	A	18609364	3	1	27	1	0	0	0	0	1	0	0	0	16788	1059	37	1	633	1	TUBA8	22	18609364	Missense_Mutation	SNP	G	TCGA-OR-A5K4-01A-11D-A29I-10		18609364	32695202	358	4769										
DGCR8	54487	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr22	20073745	20073745	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	tctctaagggccgcctcctcAtagacccgaactgtagtggc	10	14	2	1	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	DGCR8-90	NM_001190326	exon2	c.A259G	p.I87V	CTCCTCATAGACC	.	84	12	111	0	.	3	3	0	0	0	G	20073745	A	G	20073745	3	3	27	1	0	0	0	0	1	0	0	0	4475	217	8	4	261	4	DGCR8	22	20073745	Missense_Mutation	SNP	A	TCGA-OR-A5K4-01A-11D-A29I-10	1464381	20073745	31230821	359	4770										
PIWIL3	440822	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr22	25150089	25150089	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	aatcataagcagtttctattCggagcagtttgtggctcaca	9	8	3	0	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	PIWIL3-93	NM_001008496	exon8	c.G869A	p.R290Q	TCTATTCGGAGCA	.	104	96	114	1	.	0	0	0	0	0	T	25150089	C	T	25150089	3	4	27	1	0	0	0	0	1	0	0	0	11988	884	31	1	1835	1	PIWIL3	22	25150089	Missense_Mutation	SNP	C	TCGA-OR-A5K4-01A-11D-A29I-10	5076344	25150089	26154477	360	4771										
SFI1	9814	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr22	31971289	31971289	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	ctggcagcaggcctgggagcGgagggagagcttgtacgctc	18	10	0	1	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	SFI1-90	NM_001007467	exon10	c.G995A	p.R332Q	GGGAGCGGAGGGA	.	119	28	136	0	.	2	2	0	0	0	A	31971289	G	A	31971289	3	1	27	1	0	0	0	0	1	0	0	0	14191	1116	39	1	1029	1	SFI1	22	31971289	Missense_Mutation	SNP	G	TCGA-OR-A5K4-01A-11D-A29I-10	6821200	31971289	19333277	361	4772										
TRIOBP	11078	broad.mit.edu	37	chr22	38121765	38121765	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	ctgctgtgtgcattggacacCgagatgccccccgggcgtcc	13	15	0	1	rs118204030		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	TRIOBP-136	NM_001039141	exon7	c.C3202T	p.R1068X	GGACACCGAGATG	.	43	8	49	1	.	0	0	0	0	0	T	38121765	C	T	38121765	4	4	27	1	0	0	0	0	0	1	0	0	16591	644	23	1	3220	1	TRIOBP	22	38121765	Nonsense_Mutation	SNP	C	TCGA-OR-A5K4-01A-11D-A29I-10	6150476	38121765	13182801	362	4773										
MXRA5	25878	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chrX	3228791	3228791	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	atagtatggagctggcagaaCcacaccctcgggaaaagccc	11	12	0	1	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	MXRA5-136	NM_015419	exon7	c.G7453A	p.V2485I	GCAGAACCACACC	.	558	314	398	2	.	0	0	0	0	0	T	3228791	C	T	3228791	3	4	27	1	0	0	0	0	1	0	0	0	10031	507	18	3	1037	3	MXRA5	23	3228791	Missense_Mutation	SNP	C	TCGA-OR-A5K4-01A-11D-A29I-10		3228791	152041769	363	4774										
CDKL5	6792	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	18525233	18525233	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	cttcatgaagattcctaacaTtggtaatgtgatgaataaat	7	5	1	4	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	CDKL5-838	NM_003159	exon2	c.T17G	p.I6S	CTAACATTGGTAA	.	277	134	201	0	.	0	0	0	0	0	G	18525233	T	G	18525233	3	3	27	1	0	0	0	0	1	0	0	0	3163	1493	52	5	19	5	CDKL5	23	18525233	Missense_Mutation	SNP	T	TCGA-OR-A5K4-01A-11D-A29I-10	15296442	18525233	136745327	364	4775										
NYX	60506	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chrX	41333840	41333840	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	gacctcagccaggtgaccttCgggcgctcctccgatggcct	12	16	1	1	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	NYX-108	NM_022567	exon2	c.C1134T	p.F378F	GACCTTCGGGCGC	.	210	113	65	0	.	0	0	0	0	0	T	41333840	C	T	41333840	2	4	27	1	0	0	0	0	0	0	0	1	10826	883	31	1		1	NYX	23	41333840	Silent	SNP	C	TCGA-OR-A5K4-01A-11D-A29I-10	22808607	41333840	113936720	365	4776										
CXorf36	79742	broad.mit.edu	37	chrX	45017131	45017131	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	cgcaggagcgggctggccagGccctacgcgcaggtgggaga	19	12	0	1	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	CXorf36-130	NM_176819	exon3	c.C501A	p.G167G	GGCCAGGCCCTAC	.	120	9	43	2	.	0	0	0	0	0	T	45017131	G	T	45017131	2	4	27	1	0	0	0	0	0	0	0	1	4112	1190	42	3		3	CXorf36	23	45017131	Silent	SNP	G	TCGA-OR-A5K4-01A-11D-A29I-10	3683291	45017131	110253429	366	4777										
RBM10	8241	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	47039883	47039883	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	ggccagcactgccattgctgCggcccagtgggccatctcac	12	16	1	0	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	RBM10-626	NM_001204468	exon12	c.C1421T	p.A474V	TTGCTGCGGCCCA	.	368	74	323	1	.	27	15	12	0	0	T	47039883	C	T	47039883	3	4	27	1	0	0	0	0	1	0	0	0	13146	768	27	1	1268	1	RBM10	23	47039883	Missense_Mutation	SNP	C	TCGA-OR-A5K4-01A-11D-A29I-10	2022752	47039883	108230677	367	4778										
GATA1	2623	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	48649679	48649679	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	ctgccccgagcacagccaccGctgcagctgcggcactggcc	12	19	0	0	rs150572851	byfrequency	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	GATA1-1315	NM_002049	exon2	c.G163A	p.A55T	GCCACCGCTGCAG	.	160	82	134	1	G|0.999;A|0.001	5	5	0	0	0	A	48649679	G	A	48649679	3	1	27	1	0	0	0	0	1	0	0	0	6273	1087	38	1	165	1	GATA1	23	48649679	Missense_Mutation	SNP	G	TCGA-OR-A5K4-01A-11D-A29I-10	1609796	48649679	106620881	368	4779										
TSPYL2	64061	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	53112257	53112257	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	gcaggaggcggcggcggcggCggaggaggaagcagaggaag	24	7	0	1	rs192279149	by1000genomes;alternate_allele	TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	TSPYL2-130	NM_022117	exon1	c.C577T	p.R193W	CGGCGGCGGAGGA	.	481	230	385	1	C|0.999;A|0.001	32	32	0	0	0	T	53112257	C	T	53112257	3	4	27	1	0	0	0	0	1	0	0	0	16698	759	27	1	579	1	TSPYL2	23	53112257	Missense_Mutation	SNP	C	TCGA-OR-A5K4-01A-11D-A29I-10	4462578	53112257	102158303	369	4780										
TRO	7216	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	54951477	54951477	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	tatttcccagaaatcattgaAcgagcaagctacactctgga	7	10	2	2	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	TRO-131	NM_016157	exon6	c.A1461G	p.E487E	CATTGAACGAGCA	.	672	302	598	2	.	8	0	8	0	0	G	54951477	A	G	54951477	2	3	27	1	0	0	0	0	0	0	0	1	16612	40	2	4		4	TRO	23	54951477	Silent	SNP	A	TCGA-OR-A5K4-01A-11D-A29I-10	1839220	54951477	100319083	370	4781										
FAM155B	27112	broad.mit.edu;bcgsc.ca	37	chrX	68749609	68749609	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	ccatcatgatcccccaggccGtgtcagcaacaagcccgccc	8	19	2	1	rs201655694		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	FAM155B-131	NM_015686	exon3	c.G1229A	p.R410H	CAGGCCGTGTCAG	.	209	8	177	0	G|0.999;A|0.001	1	1	0	0	0	A	68749609	G	A	68749609	3	1	27	1	0	0	0	0	1	0	0	0	5482	1145	40	1	1239	1	FAM155B	23	68749609	Missense_Mutation	SNP	G	TCGA-OR-A5K4-01A-11D-A29I-10	13798132	68749609	86520951	371	4782										
PDZD11	51248	broad.mit.edu;bcgsc.ca	37	chrX	69508314	69508314	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	gcttcttcagtgtgatggttCggggcagaaactgggtcaac	14	8	3	2	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	PDZD11-130	NM_016484	exon3	c.G137A	p.R46Q	ATGGTTCGGGGCA	.	613	20	457	2	.	196	182	13	0	1	T	69508314	C	T	69508314	3	4	27	1	0	0	0	0	1	0	0	0	11729	884	31	1	305	1	PDZD11	23	69508314	Missense_Mutation	SNP	C	TCGA-OR-A5K4-01A-11D-A29I-10	758705	69508314	85762246	372	4783										
TCEAL2	140597	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	101382400	101382400	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	ggatgcaaagaaatttacagGaccccttctatcctaggggt	10	9	1	1	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	TCEAL2-130	NM_080390	exon3	c.G598T	p.D200Y	TTACAGGACCCCT	.	233	99	106	0	.	0	0	0	0	0	T	101382400	G	T	101382400	3	4	27	1	0	0	0	0	1	0	0	0	15708	1174	41	3	600	3	TCEAL2	23	101382400	Missense_Mutation	SNP	G	TCGA-OR-A5K4-01A-11D-A29I-10	31874086	101382400	53888160	373	4784										
COL4A5	1287	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	107812000	107812000	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	ttttcaaagggaatgccaggCcacgatggggccccaggacc	13	12	1	0	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	COL4A5-133	NM_000495	exon6	c.C333T	p.G111G	GCCAGGCCACGAT	.	387	194	212	0	.	0	0	0	0	0	T	107812000	C	T	107812000	2	4	27	1	0	0	0	0	0	0	0	1	3700	726	26	3		3	COL4A5	23	107812000	Silent	SNP	C	TCGA-OR-A5K4-01A-11D-A29I-10	6429600	107812000	47458560	374	4785										
SLC6A14	11254	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	115582608	115582608	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	aaattattttctcttataggTatggaaagatgctgccactc	7	7	1	1	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	SLC6A14-133	NM_007231	exon8	c.T932C	p.V311A	TATAGGTATGGAA	.	87	39	57	1	.	0	0	0	0	0	C	115582608	T	C	115582608	3	2	27	1	0	0	0	0	1	0	0	0	14712	1652	57	4	962	4	SLC6A14	23	115582608	Missense_Mutation	SNP	T	TCGA-OR-A5K4-01A-11D-A29I-10	7770608	115582608	39687952	375	4786										
RPL39	6170	broad.mit.edu	37	chrX	118923904	118923904	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	cagttttcatccgaatccacTggggaatgggacgattttgc	11	9	1	0	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	RPL39-130	NM_001000	exon2	c.A74T	p.K25I	ATCCACTGGGGAA	.	111	5	47	0	.	2280	2278	0	2	0	A	118923904	T	A	118923904	3	1	27	1	0	0	0	0	1	0	0	0	13627	1580	55	5	89	5	RPL39	23	118923904	Missense_Mutation	SNP	T	TCGA-OR-A5K4-01A-11D-A29I-10	3341296	118923904	36346656	376	4787										
BCORL1	63035	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	129190051	129190051	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	actgtggagctggtgcggtaCgagccagacctacttcggct	14	11	0	1	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	BCORL1-294	NM_021946	exon12	c.C5076T	p.Y1692Y	GCGGTACGAGCCA	.	199	82	121	0	.	3	1	2	0	0	T	129190051	C	T	129190051	2	4	27	1	0	0	0	0	0	0	0	1	1388	547	19	1		1	BCORL1	23	129190051	Silent	SNP	C	TCGA-OR-A5K4-01A-11D-A29I-10	10266147	129190051	26080509	377	4788										
MAMLD1	10046	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	149639048	149639048	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	agcaatgctgccctggggccCgccatgccctatgctcctga	11	16	0	1	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	MAMLD1-130	NM_005491	exon3	c.C1203T	p.P401P	GGGGCCCGCCATG	.	191	83	131	1	.	23	23	0	0	0	T	149639048	C	T	149639048	2	4	27	1	0	0	0	0	0	0	0	1	9236	639	23	1		1	MAMLD1	23	149639048	Silent	SNP	C	TCGA-OR-A5K4-01A-11D-A29I-10	20448997	149639048	5631512	378	4789										
HAUS7	55559	broad.mit.edu;bcgsc.ca;mdanderson.org	37	chrX	152735950	152735950	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	acagccgccctggacacgctGctgtcgccctcgtcctctga	10	18	1	1	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	HAUS7-90	NM_017518	exon1	c.C96T	p.S32S	CACGCTGCTGTCG	.	338	151	177	1	.	24	24	0	0	0	A	152735950	G	A	152735950	2	1	27	1	0	0	0	0	0	0	0	1	6992	1310	46	3		3	HAUS7	23	152735950	Silent	SNP	G	TCGA-OR-A5K4-01A-11D-A29I-10	3096902	152735950	2534610	379	4790										
FLNA	2316	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	153588004	153588004	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0131578947368421	5	1	0.182843101828431	3.69343065693431	0.111922141119221	1	1	0	ccgtcataggtcacgtccacGgagtgcagtcctggaggagt	14	11	2	0	novel		TCGA-OR-A5K4-01A-11D-A29I-10	TCGA-OR-A5K4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	451372e2-860f-4f7e-bf09-d42201a0717f	624bb1d5-633e-47a5-87f5-a3e4799fc621	.	FLNA-599	NM_001456	exon24	c.C3990T	p.S1330S	GTCCACGGAGTGC	.	133	71	85	0	.	0	0	0	0	0	A	153588004	G	A	153588004	2	1	27	1	0	0	0	0	0	0	0	1	5952	1103	39	1		1	FLNA	23	153588004	Silent	SNP	G	TCGA-OR-A5K4-01A-11D-A29I-10	852054	153588004	1682556	380	4791										
SLC2A5	6518	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	9118302	9118302	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0841121495327103	18	0.232475284102645	1.64647619047619	3.23414965986395	0.929462365591398	0.365117975786538	1	0	ttgccagggcaagcacaagcGtcagcctctgcagagatcac	11	13	3	1	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	SLC2A5-517	NM_003039	exon2	c.C41T	p.T14M	ACAAGCGTCAGCC	.	242	92	321	1	.	0	0	0	0	0	A	9118302	G	A	9118302	3	1	28	1	0	0	0	0	1	0	0	0	14583	1145	40	1	1672	1	SLC2A5	1	9118302	Missense_Mutation	SNP	G	TCGA-OR-A5K5-01A-11D-A29I-10		9118302	240132319	1	4792										
PTCHD2	57540	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	11574461	11574461	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0841121495327103	18	0.232475284102645	1.64647619047619	3.23414965986395	0.929462365591398	0.365117975786538	1	0	ccccagcaaagtccaggttcTctatggggggacagacctgt	12	12	1	1	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	PTCHD2-209	NM_020780	exon4	c.T1331C	p.L444P	AGGTTCTCTATGG	.	50	21	90	1	.	0	0	0	0	0	C	11574461	T	C	11574461	3	2	28	1	0	0	0	0	1	0	0	0	12765	1551	54	4	1341	4	PTCHD2	1	11574461	Missense_Mutation	SNP	T	TCGA-OR-A5K5-01A-11D-A29I-10	2456159	11574461	237676160	2	4793										
FAM131C	348487	ucsc.edu	37	chr1	16385007	16385007	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0841121495327103	18	0.232475284102645	1.64647619047619	3.23414965986395	0.929462365591398	0.365117975786538	1	0	agggagcccggggggtgggtCccaccctcgggtccttgggc	19	13	0	0	rs28667975		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	FAM131C-514	NM_182623	exon7	c.G768A	p.G256G	GTGGGTCCCACCC	.	31	9	11	0	C|1.000;|0.000	35	35	0	0	0	T	16385007	C	T	16385007	2	4	28	1	0	0	0	0	0	0	0	1	5457	842	30	3		3	FAM131C	1	16385007	Silent	SNP	C	TCGA-OR-A5K5-01A-11D-A29I-10	4810546	16385007	232865614	3	4794										
UBR4	23352	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	19455563	19455563	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0841121495327103	18	0.232475284102645	1.64647619047619	3.23414965986395	0.929462365591398	0.365117975786538	1	0	acagcattagacggaccatgTgcagcctaaaagggtgggga	14	8	0	1	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	UBR4-612	NM_020765	exon61	c.A8912T	p.H2971L	ACCATGTGCAGCC	.	88	30	131	0	.	0	0	0	0	0	A	19455563	T	A	19455563	3	1	28	1	0	0	0	0	1	0	0	0	16942	1696	59	5	6823	5	UBR4	1	19455563	Missense_Mutation	SNP	T	TCGA-OR-A5K5-01A-11D-A29I-10	3070556	19455563	229795058	4	4795										
RNF19B	127544	bcgsc.ca	37	chr1	33407925	33407925	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0841121495327103	18	0.232475284102645	1.64647619047619	3.23414965986395	0.929462365591398	0.365117975786538	1	0	ctgagagggctgcaaagctgGccgtttcgctgtaaggacct	14	10	0	1	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	RNF19B-68	NM_153341	exon7	c.C1541T	p.A514V	AAGCTGGCCGTTT	.	111	6	157	0	.	3	3	0	0	0	A	33407925	G	A	33407925	3	1	28	1	0	0	0	0	1	0	0	0	13506	1203	42	3	695	3	RNF19B	1	33407925	Missense_Mutation	SNP	G	TCGA-OR-A5K5-01A-11D-A29I-10	13952362	33407925	215842696	5	4796										
PRDX1	5052	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	45980288	45980290	+	In_Frame_Del	DEL	ATC	ATC	-													0.0841121495327103	18	0.232475284102645	1.64647619047619	3.23414965986395	0.929462365591398	0.365117975786538	1	0	atctgccgaagaatacccttAtcatcaatgataaaaaggcc					novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	ATC	ATC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	PRDX1-514	NM_181696	exon5	c.403_405del	p.135_135del	ACCCTTATCATCA	.	107	35	169	0	.	0	0	0	0	0	-	45980290	ATC	-	45980288	7	5	28	1	0	1	0	1	0	0	0	0	12496	446	16	0	202	0	PRDX1	1	45980288	In_Frame_Del	DEL	ATC	TCGA-OR-A5K5-01A-11D-A29I-10	12572363	45980288	203270333	6	4797										
PDE4B	5142	ucsc.edu;bcgsc.ca	37	chr1	66384376	66384376	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0841121495327103	18	0.232475284102645	1.64647619047619	3.23414965986395	0.929462365591398	0.365117975786538	1	0	ggagagggagaaggtgttgcTcaggaaacttacagttacca	14	6	1	2	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	PDE4B-92	NM_002600	exon3	c.T139A	p.S47T	TGTTGCTCAGGAA	.	225	99	269	3	.	0	0	0	0	0	A	66384376	T	A	66384376	3	1	28	1	0	0	0	0	1	0	0	0	11669	1551	54	5	145	5	PDE4B	1	66384376	Missense_Mutation	SNP	T	TCGA-OR-A5K5-01A-11D-A29I-10	20404088	66384376	182866245	7	4798										
IFI44L	10964	ucsc.edu	37	chr1	79095482	79095482	+	Nonsense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0841121495327103	18	0.232475284102645	1.64647619047619	3.23414965986395	0.929462365591398	0.365117975786538	1	0	ttcagaaattcgtattctttTggtgggtccagttgggtctg	12	6	3	1	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	IFI44L-90	NM_006820	exon4	c.T605A	p.L202X	TTCTTTTGGTGGG	.	42	4	65	0	.	0	0	0	0	0	A	79095482	T	A	79095482	4	1	28	1	0	0	0	0	0	1	0	0	7539	1821	63	5	615	5	IFI44L	1	79095482	Nonsense_Mutation	SNP	T	TCGA-OR-A5K5-01A-11D-A29I-10	12711106	79095482	170155139	8	4799										
GBP4	115361	ucsc.edu	37	chr1	89658754	89658754	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0841121495327103	18	0.232475284102645	1.64647619047619	3.23414965986395	0.929462365591398	0.365117975786538	1	0	gtctggggcaggattttgccCtgattagctctgctagctca	12	10	3	1	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	GBP4-90	NM_052941	exon5	c.G503T	p.R168M	TTTGCCCTGATTA	.	42	4	85	0	.	0	0	0	0	0	A	89658754	C	A	89658754	3	1	28	1	0	0	0	0	1	0	0	0	6296	681	24	3	1447	3	GBP4	1	89658754	Missense_Mutation	SNP	C	TCGA-OR-A5K5-01A-11D-A29I-10	10563272	89658754	159591867	9	4800										
NTNG1	22854	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	107691233	107691233	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0841121495327103	18	0.232475284102645	1.64647619047619	3.23414965986395	0.929462365591398	0.365117975786538	1	0	gagatgtatttgtcaagattCctgtcgattcatgccctttg	9	8	2	2	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	NTNG1-140	NM_001113228	exon2	c.C18A	p.F6L	AAGATTCCTGTCG	.	119	55	145	0	.	0	0	0	0	0	A	107691233	C	A	107691233	3	1	28	1	0	0	0	0	1	0	0	0	10733	854	30	3	20	3	NTNG1	1	107691233	Missense_Mutation	SNP	C	TCGA-OR-A5K5-01A-11D-A29I-10	18032479	107691233	141559388	10	4801										
ADAMTSL4	54507	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	150532560	150532560	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0841121495327103	18	0.232475284102645	1.64647619047619	3.23414965986395	0.929462365591398	0.365117975786538	1	0	tcaatgcaaggacagctctcCacattgccccctggtggtac	9	14	2	0	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	ADAMTSL4-92	NM_019032	exon19	c.C3113T	p.P1038L	GCTCTCCACATTG	.	262	47	137	0	.	2	2	0	0	0	T	150532560	C	T	150532560	3	4	28	1	0	0	0	0	1	0	0	0	277	594	21	3	3254	3	ADAMTSL4	1	150532560	Missense_Mutation	SNP	C	TCGA-OR-A5K5-01A-11D-A29I-10	42841327	150532560	98718061	11	4802										
SPTA1	6708	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	158632609	158632609	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0841121495327103	18	0.232475284102645	1.64647619047619	3.23414965986395	0.929462365591398	0.365117975786538	1	0	gagcttcttctttcgggtggCcagtggctctttcagagctt	12	10	4	1	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	SPTA1-142	NM_003126	exon17	c.G2347C	p.A783P	GGGTGGCCAGTGG	.	209	44	150	0	.	0	0	0	0	0	G	158632609	C	G	158632609	3	3	28	1	0	0	0	0	1	0	0	0	15153	739	26	3	5056	3	SPTA1	1	158632609	Missense_Mutation	SNP	C	TCGA-OR-A5K5-01A-11D-A29I-10	8100049	158632609	90618012	12	4803										
DUSP12	11266	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	161722196	161722196	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0841121495327103	18	0.232475284102645	1.64647619047619	3.23414965986395	0.929462365591398	0.365117975786538	1	0	aagaactctttgctgttgacCcaactaccgtttcacaagga	7	11	2	2	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	DUSP12-226	NM_007240	exon4	c.C616T	p.P206S	GTTGACCCAACTA	.	319	135	261	2	.	20	13	7	0	0	T	161722196	C	T	161722196	3	4	28	1	0	0	0	0	1	0	0	0	4823	623	22	3	630	3	DUSP12	1	161722196	Missense_Mutation	SNP	C	TCGA-OR-A5K5-01A-11D-A29I-10	3089587	161722196	87528425	13	4804										
PTPN7	5778	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	202122941	202122941	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0841121495327103	18	0.232475284102645	1.64647619047619	3.23414965986395	0.929462365591398	0.365117975786538	1	0	gtccataggtttcctcttctGtgggccagtagtggacacat	11	10	2	0	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	PTPN7-227	NM_002832	exon7	c.C944A	p.T315K	TCTTCTGTGGGCC	.	144	22	100	0	.	0	0	0	0	0	T	202122941	G	T	202122941	3	4	28	1	0	0	0	0	1	0	0	0	12828	1377	48	3	469	3	PTPN7	1	202122941	Missense_Mutation	SNP	G	TCGA-OR-A5K5-01A-11D-A29I-10	40400745	202122941	47127680	14	4805										
KCNH1	3756	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	210857405	210857405	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0841121495327103	18	0.232475284102645	1.64647619047619	3.23414965986395	0.929462365591398	0.365117975786538	1	0	agggtggtccgggggcaagaTcaggggggcctcattctttc	17	9	3	1	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	KCNH1-94	NM_172362	exon11	c.A2188C	p.I730L	GCAAGATCAGGGG	.	45	10	22	0	.	0	0	0	0	0	G	210857405	T	G	210857405	3	3	28	1	0	0	0	0	1	0	0	0	8052	1435	50	5	785	5	KCNH1	1	210857405	Missense_Mutation	SNP	T	TCGA-OR-A5K5-01A-11D-A29I-10	8734464	210857405	38393216	15	4806										
USH2A	7399	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	215821063	215821063	+	Silent	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0841121495327103	18	0.232475284102645	1.64647619047619	3.23414965986395	0.929462365591398	0.365117975786538	1	0	gggcaagccacgtggaattgGagttcatagctaaaatgaga	13	6	1	1	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	USH2A-115	NM_206933	exon67	c.C14592A	p.L4864L	GAATTGGAGTTCA	.	50	10	29	0	.	0	0	0	0	0	T	215821063	G	T	215821063	2	4	28	1	0	0	0	0	0	0	0	1	17074	1161	41	3		3	USH2A	1	215821063	Silent	SNP	G	TCGA-OR-A5K5-01A-11D-A29I-10	4963658	215821063	33429558	16	4807										
TRIM11	81559	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	228582932	228582932	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0841121495327103	18	0.232475284102645	1.64647619047619	3.23414965986395	0.929462365591398	0.365117975786538	1	0	tcagctcagggttggcggtgTccgggtccaaggtcacgtcc	15	12	3	0	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	TRIM11-658	NM_145214	exon6	c.A881G	p.D294G	GCGGTGTCCGGGT	.	43	9	25	0	.	30	20	10	0	0	C	228582932	T	C	228582932	3	2	28	1	0	0	0	0	1	0	0	0	16525	1667	58	4	529	4	TRIM11	1	228582932	Missense_Mutation	SNP	T	TCGA-OR-A5K5-01A-11D-A29I-10	12761869	228582932	20667689	17	4808										
CMPK2	129607	hgsc.bcm.edu	37	chr2	7005369	7005369	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0841121495327103	18	0.232475284102645	1.64647619047619	3.23414965986395	0.929462365591398	0.365117975786538	1	0	tgcgggcgtggtgcctcctgAcaggcgcccagcagctcgag	16	14	0	1	rs11678810		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	CMPK2-68	NM_001256478	exon1	c.T459C	p.C153C	CTCCTGACAGGCG	.	15	15	0	0	A|0.003;G|0.997	0	0	0	0	0	G	7005369	A	G	7005369	2	3	28	1	0	0	0	0	0	0	0	1	3587	273	10	4		4	CMPK2	2	7005369	Silent	SNP	A	TCGA-OR-A5K5-01A-11D-A29I-10		7005369	236194004	18	4809										
RAD51AP2	729475	broad.mit.edu;bcgsc.ca	37	chr2	17699028	17699028	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0841121495327103	18	0.232475284102645	1.64647619047619	3.23414965986395	0.929462365591398	0.365117975786538	1	0	attttctcttttatttgatgGcacaacactgttagctttac	5	8	1	1	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	RAD51AP2-23	NM_001099218	exon1	c.C655A	p.P219T	TTGATGGCACAAC	.	79	5	66	0	.	0	0	0	0	0	T	17699028	G	T	17699028	3	4	28	1	0	0	0	0	1	0	0	0	13022	1203	42	3	2836	3	RAD51AP2	2	17699028	Missense_Mutation	SNP	G	TCGA-OR-A5K5-01A-11D-A29I-10	10693659	17699028	225500345	19	4810										
ITSN2	50618	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	24522788	24522788	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0841121495327103	18	0.232475284102645	1.64647619047619	3.23414965986395	0.929462365591398	0.365117975786538	1	0	taaaaataacctctcgtcttTctatgtcttttctcctttct	2	11	6	0	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	ITSN2-539	NM_147152	exon12	c.A1334G	p.E445G	CGTCTTTCTATGT	.	75	19	55	0	.	0	0	0	0	0	C	24522788	T	C	24522788	3	2	28	1	0	0	0	0	1	0	0	0	7948	1783	62	4	3926	4	ITSN2	2	24522788	Missense_Mutation	SNP	T	TCGA-OR-A5K5-01A-11D-A29I-10	6823760	24522788	218676585	20	4811										
OTOF	9381	hgsc.bcm.edu;bcgsc.ca	37	chr2	26684681	26684683	+	In_Frame_Del	DEL	TCT	TCT	-													0.0841121495327103	18	0.232475284102645	1.64647619047619	3.23414965986395	0.929462365591398	0.365117975786538	1	0	ctccttcttggagatgacgaTcttctcctccgccgccaggt					novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	TCT	TCT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	OTOF-135	NM_194248	exon43	c.5414_5416del	p.1805_1806del	TGACGATCTTCTC	.	341	75	224	0	.	0	0	0	0	0	-	26684683	TCT	-	26684681	7	5	28	1	0	1	0	1	0	0	0	0	11332	1435	50	0	778	0	OTOF	2	26684681	In_Frame_Del	DEL	TCT	TCGA-OR-A5K5-01A-11D-A29I-10	2161893	26684681	216514692	21	4812										
OTOF	9381	broad.mit.edu	37	chr2	26696027	26696027	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0841121495327103	18	0.232475284102645	1.64647619047619	3.23414965986395	0.929462365591398	0.365117975786538	1	0	gttccagctgggggccgagcGgtctgggggccggtagatga	20	9	1	2	rs199904558		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	OTOF-135	NM_194248	exon29	c.C3706G	p.R1236G	CCGAGCGGTCTGG	.	137	5	92	1	G|0.999;C|0.001	0	0	0	0	0	C	26696027	G	C	26696027	3	2	28	1	0	0	0	0	1	0	0	0	11332	1116	39	2	2544	2	OTOF	2	26696027	Missense_Mutation	SNP	G	TCGA-OR-A5K5-01A-11D-A29I-10	11346	26696027	216503346	22	4813										
CRIM1	51232	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	36739479	36739479	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0841121495327103	18	0.232475284102645	1.64647619047619	3.23414965986395	0.929462365591398	0.365117975786538	1	0	ccagagctctcatgcagtaaGatctgccccttgggtttcca	9	13	2	2	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	CRIM1-118	NM_016441	exon10	c.G1722T	p.K574N	CAGTAAGATCTGC	.	290	82	205	0	.	0	0	0	0	0	T	36739479	G	T	36739479	3	4	28	1	0	0	0	0	1	0	0	0	3879	933	33	3	1760	3	CRIM1	2	36739479	Missense_Mutation	SNP	G	TCGA-OR-A5K5-01A-11D-A29I-10	10043452	36739479	206459894	23	4814										
CCDC142	84865	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	74701812	74701812	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0841121495327103	18	0.232475284102645	1.64647619047619	3.23414965986395	0.929462365591398	0.365117975786538	1	0	gtccccttcctcctagtgtgCtttgcagctgacctgtctgg	10	14	1	1	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	CCDC142-68	NM_032779	exon9	c.G2093C	p.S698T	AGTGTGCTTTGCA	.	117	19	89	0	.	8	7	1	0	0	G	74701812	C	G	74701812	3	3	28	1	0	0	0	0	1	0	0	0	2782	797	28	3	142	3	CCDC142	2	74701812	Missense_Mutation	SNP	C	TCGA-OR-A5K5-01A-11D-A29I-10	37962333	74701812	168497561	24	4815										
SLC35F5	80255	broad.mit.edu	37	chr2	114512866	114512869	+	Frame_Shift_Del	DEL	ACAC	ACAC	-													0.0841121495327103	18	0.232475284102645	1.64647619047619	3.23414965986395	0.929462365591398	0.365117975786538	1	0	tcattcggttcatgacaaatAcacacaccatttgcagtctg					novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	SLC35F5-90	NM_025181	exon3	c.146_149del	p.49_50del	ACAAATACACACA	.	78	7	65	0	.	0	0	0	0	0	-	114512869	ACAC	-	114512866	7	5	28	1	0	1	0	1	0	0	0	0	14627	391	14	0	1474	0	SLC35F5	2	114512866	Frame_Shift_Del	DEL	ACAC	TCGA-OR-A5K5-01A-11D-A29I-10	39811054	114512866	128686507	25	4816										
DDX18	8886	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	118575133	118575133	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0841121495327103	18	0.232475284102645	1.64647619047619	3.23414965986395	0.929462365591398	0.365117975786538	1	0	ccatgaatgtgggcttatcaGaaactcaaaatggaggcatg	11	7	2	2	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	DDX18-290	NM_006773	exon2	c.G199T	p.E67X	TTATCAGAAACTC	.	155	31	135	0	.	4	4	0	0	0	T	118575133	G	T	118575133	4	4	28	1	0	0	0	0	0	1	0	0	4351	943	33	3	205	3	DDX18	2	118575133	Nonsense_Mutation	SNP	G	TCGA-OR-A5K5-01A-11D-A29I-10	4062267	118575133	124624240	26	4817										
CNTNAP5	129684	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	125285031	125285031	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0841121495327103	18	0.232475284102645	1.64647619047619	3.23414965986395	0.929462365591398	0.365117975786538	1	0	gatctgtgtagcatcaaagaCaggtaattattgtctcttct	8	7	4	1	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	CNTNAP5-524	NM_130773	exon10	c.C1644A	p.D548E	CAAAGACAGGTAA	.	97	23	108	0	.	0	0	0	0	0	A	125285031	C	A	125285031	3	1	28	1	0	0	0	0	1	0	0	0	3656	477	17	3	1682	3	CNTNAP5	2	125285031	Missense_Mutation	SNP	C	TCGA-OR-A5K5-01A-11D-A29I-10	6709898	125285031	117914342	27	4818										
ARHGAP15	55843	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	144245049	144245049	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0841121495327103	18	0.232475284102645	1.64647619047619	3.23414965986395	0.929462365591398	0.365117975786538	1	0	ccctgaaaactctgcaagaaAaaggacttattaaaggtaca	7	8	1	2	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	ARHGAP15-653	NM_018460	exon9	c.A811C	p.K271Q	CAAGAAAAAGGAC	.	48	14	35	0	.	1	1	0	0	0	C	144245049	A	C	144245049	3	2	28	1	0	0	0	0	1	0	0	0	866	15	1	5	841	5	ARHGAP15	2	144245049	Missense_Mutation	SNP	A	TCGA-OR-A5K5-01A-11D-A29I-10	18960018	144245049	98954324	28	4819										
FMNL2	114793	hgsc.bcm.edu;bcgsc.ca	37	chr2	153476031	153476031	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0841121495327103	18	0.232475284102645	1.64647619047619	3.23414965986395	0.929462365591398	0.365117975786538	1	0	tttctttgctagtgcaaaatGgtccagtaacaccacctatg	7	10	1	0	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	FMNL2-516	NM_052905	exon15	c.G1636A	p.G546S	CAAAATGGTCCAG	.	52	10	59	0	.	0	0	0	0	0	A	153476031	G	A	153476031	3	1	28	1	0	0	0	0	1	0	0	0	5971	1348	47	3	1694	3	FMNL2	2	153476031	Missense_Mutation	SNP	G	TCGA-OR-A5K5-01A-11D-A29I-10	9230982	153476031	89723342	29	4820										
KCNH7	90134	broad.mit.edu;bcgsc.ca	37	chr2	163241222	163241222	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0841121495327103	18	0.232475284102645	1.64647619047619	3.23414965986395	0.929462365591398	0.365117975786538	1	0	gcaagagtgacttcttttatCtatgtgcattcttcctgagg	9	8	3	3	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	KCNH7-95	NM_033272	exon13	c.G2938C	p.D980H	TTTTATCTATGTG	.	201	8	132	0	.	0	0	0	0	0	G	163241222	C	G	163241222	3	3	28	1	0	0	0	0	1	0	0	0	8058	913	32	3	668	3	KCNH7	2	163241222	Missense_Mutation	SNP	C	TCGA-OR-A5K5-01A-11D-A29I-10	9765191	163241222	79958151	30	4821										
CCDC141	285025	broad.mit.edu	37	chr2	179721022	179721022	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0841121495327103	18	0.232475284102645	1.64647619047619	3.23414965986395	0.929462365591398	0.365117975786538	1	0	catatcaacttgctgaatttGatatttaagcgccttcagat	6	8	2	3	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	CCDC141-78	NM_173648	exon18	c.C2827T	p.Q943X	GAATTTGATATTT	.	101	6	77	0	.	0	0	0	0	0	A	179721022	G	A	179721022	4	1	28	1	0	0	0	0	0	1	0	0	2781	1299	45	3	1549	3	CCDC141	2	179721022	Nonsense_Mutation	SNP	G	TCGA-OR-A5K5-01A-11D-A29I-10	16479800	179721022	63478351	31	4822										
CASP8	841	broad.mit.edu	37	chr2	202137439	202137440	+	Frame_Shift_Del	DEL	TG	TG	-													0.0841121495327103	18	0.232475284102645	1.64647619047619	3.23414965986395	0.929462365591398	0.365117975786538	1	0	tggacatcctgaaaagagtcTgtgcccaaatcaacaagagc					novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	CASP8-660	NM_001080125	exon4	c.667_668del	p.223_223del	AGAGTCTGTGCCC	.	107	11	68	0	.	0	0	0	0	0	-	202137440	TG	-	202137439	7	5	28	1	0	1	0	1	0	0	0	0	2683	1580	55	0	781	0	CASP8	2	202137439	Frame_Shift_Del	DEL	TG	TCGA-OR-A5K5-01A-11D-A29I-10	22416417	202137439	41061934	32	4823										
CYP20A1	57404	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	204143326	204143326	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0841121495327103	18	0.232475284102645	1.64647619047619	3.23414965986395	0.929462365591398	0.365117975786538	1	0	actggagtctgttttaaggaAcatcataaaagaacgaaaag	9	5	2	1	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	CYP20A1-90	NM_177538	exon7	c.A710G	p.N237S	TAAGGAACATCAT	.	342	62	313	0	.	19	13	6	0	0	G	204143326	A	G	204143326	3	3	28	1	0	0	0	0	1	0	0	0	4158	43	2	4	736	4	CYP20A1	2	204143326	Missense_Mutation	SNP	A	TCGA-OR-A5K5-01A-11D-A29I-10	2005887	204143326	39056047	33	4824										
VWC2L	402117	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	215279234	215279234	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0841121495327103	18	0.232475284102645	1.64647619047619	3.23414965986395	0.929462365591398	0.365117975786538	1	0	agtggaacacaatggatgctGtcctgagtgcaaagaagtaa	12	6	0	2	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	.	NM_001080500	exon2	c.G317T	p.C106F	GATGCTGTCCTGA	.	112	33	80	0	.	0	0	0	0	0	T	215279234	G	T	215279234	3	4	28	1	0	0	0	0	1	0	0	0	17282	1377	48	3	319	3	VWC2L	2	215279234	Missense_Mutation	SNP	G	TCGA-OR-A5K5-01A-11D-A29I-10	11135908	215279234	27920139	34	4825										
ZNF142	7701	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	219508012	219508012	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0841121495327103	18	0.232475284102645	1.64647619047619	3.23414965986395	0.929462365591398	0.365117975786538	1	0	tcccattcttcgggggagcaGagtccccattgctcaacggg	12	13	2	1	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	ZNF142-137	NM_001105537	exon8	c.C3227T	p.S1076F	GGAGCAGAGTCCC	.	222	46	154	1	.	1	0	1	0	0	A	219508012	G	A	219508012	3	1	28	1	0	0	0	0	1	0	0	0	17768	942	33	3	1848	3	ZNF142	2	219508012	Missense_Mutation	SNP	G	TCGA-OR-A5K5-01A-11D-A29I-10	4228778	219508012	23691361	35	4826										
CCDC108	255101	broad.mit.edu	37	chr2	219896232	219896232	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0841121495327103	18	0.232475284102645	1.64647619047619	3.23414965986395	0.929462365591398	0.365117975786538	1	0	ccacattatccaggcagaaaAaggcctcagtcgtatctccc	7	14	2	1	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	CCDC108-94	NM_194302	exon7	c.T794C	p.F265S	CAGAAAAAGGCCT	.	588	12	403	1	.	0	0	0	0	0	G	219896232	A	G	219896232	3	3	28	1	0	0	0	0	1	0	0	0	2749	14	1	4	5099	4	CCDC108	2	219896232	Missense_Mutation	SNP	A	TCGA-OR-A5K5-01A-11D-A29I-10	388220	219896232	23303141	36	4827										
TRIP12	9320	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	230656613	230656613	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0841121495327103	18	0.232475284102645	1.64647619047619	3.23414965986395	0.929462365591398	0.365117975786538	1	0	agtctttgtccaaataccagCtctgcctagaggattgctct	8	11	3	1	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	TRIP12-572	NM_004238	exon28	c.G4159A	p.A1387T	TACCAGCTCTGCC	.	255	126	161	0	.	14	9	5	0	0	T	230656613	C	T	230656613	3	4	28	1	0	0	0	0	1	0	0	0	16594	797	28	3	1875	3	TRIP12	2	230656613	Missense_Mutation	SNP	C	TCGA-OR-A5K5-01A-11D-A29I-10	10760381	230656613	12542760	37	4828										
NMUR1	10316	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	232393591	232393591	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0841121495327103	18	0.232475284102645	1.64647619047619	3.23414965986395	0.929462365591398	0.365117975786538	1	0	ggccccaggtacttgagtctCagtgcctcgtcagtcaggtt	12	12	3	1	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	NMUR1-523	NM_006056	exon2	c.G141T	p.L47L	GAGTCTCAGTGCC	.	209	22	162	1	.	0	0	0	0	0	A	232393591	C	A	232393591	2	1	28	1	0	0	0	0	0	0	0	1	10535	813	29	3		3	NMUR1	2	232393591	Silent	SNP	C	TCGA-OR-A5K5-01A-11D-A29I-10	1736978	232393591	10805782	38	4829										
DIS3L2	129563	broad.mit.edu	37	chr2	233194545	233194545	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0841121495327103	18	0.232475284102645	1.64647619047619	3.23414965986395	0.929462365591398	0.365117975786538	1	0	tcgtggaggagttcatgctcTtggccaacatggcagtggcc	14	10	2	0	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	DIS3L2-136	NM_152383	exon15	c.T1762A	p.L588M	ATGCTCTTGGCCA	.	74	3	57	0	.	28	28	0	0	0	A	233194545	T	A	233194545	3	1	28	1	0	0	0	0	1	0	0	0	4548	1606	56	5	1816	5	DIS3L2	2	233194545	Missense_Mutation	SNP	T	TCGA-OR-A5K5-01A-11D-A29I-10	800954	233194545	10004828	39	4830										
KIF1A	547	hgsc.bcm.edu	37	chr2	241696843	241696843	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0841121495327103	18	0.232475284102645	1.64647619047619	3.23414965986395	0.929462365591398	0.365117975786538	1	0	aggtcctcctcctcctcatcCtcctcctcctcctcctcctc	2	24	1	0	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	KIF1A-91	NM_001244008	exon27	c.G2751T	p.E917D	CTCATCCTCCTCC	.	227	12	165	0	.	0	0	0	0	0	A	241696843	C	A	241696843	3	1	28	1	0	0	0	0	1	0	0	0	8304	696	24	3		3	KIF1A	2	241696843	Missense_Mutation	SNP	C	TCGA-OR-A5K5-01A-11D-A29I-10	8502298	241696843	1502530	40	4831										
KIF1A	547	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr2	241715297	241715298	+	Frame_Shift_Ins	INS	-	-	CGGAATCT													0.0841121495327103	18	0.232475284102645	1.64647619047619	3.23414965986395	0.929462365591398	0.365117975786538	1	0	ccggaggagccaggtcaacaINScggaatctcggtacggaatg					novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	KIF1A-91	NM_001244008	exon11	c.929_930insAGATTCCG	p.V310fs	GTCAACACGGAAT	.	105	8	90	0	.	0	0	0	0	0	CGGAATCT	241715298	-	CGGAATCT	241715297	7	5	28	1	0	1	1	0	0	0	0	0	8304	159	6	0	4291	0	KIF1A	2	241715297	Frame_Shift_Ins	INS	-	TCGA-OR-A5K5-01A-11D-A29I-10	18454	241715297	1484076	41	4832										
PRRT3	285368	bcgsc.ca	37	chr3	9990800	9990800	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.0841121495327103	18	0.232475284102645	1.64647619047619	3.23414965986395	0.929462365591398	0.365117975786538	1	0	cccacctggcttagacggccGatcaggagcctctgaggcgg	14	14	2	2	rs59465469	byfrequency	TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	PRRT3-90	NM_207351	exon2	c.C1000G	p.R334G	ACGGCCGATCAGG	.	7	6	13	0	G|0.674;C|0.326	4	1	3	0	0	C	9990800	G	C	9990800	3	2	28	1	0	0	0	0	1	0	0	0	12643	1057	37	2	1957	2	PRRT3	3	9990800	Missense_Mutation	SNP	G	TCGA-OR-A5K5-01A-11D-A29I-10		9990800	188031630	42	4833										
GOLGA4	2803	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	37396592	37396592	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0841121495327103	18	0.232475284102645	1.64647619047619	3.23414965986395	0.929462365591398	0.365117975786538	1	0	atctcttgtttttcttgtagAccatggcaaaagttataacc	6	8	2	1	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	GOLGA4-93	NM_001172713	exon22	c.A6622C	p.T2208P	TTGTAGACCATGG	.	75	13	58	0	.	0	0	0	0	0	C	37396592	A	C	37396592	3	2	28	1	0	0	0	0	1	0	0	0	6575	289	10	5	6733	5	GOLGA4	3	37396592	Missense_Mutation	SNP	A	TCGA-OR-A5K5-01A-11D-A29I-10	27405792	37396592	160625838	43	4834										
CTNNB1	1499	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	41266104	41266104	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0841121495327103	18	0.232475284102645	1.64647619047619	3.23414965986395	0.929462365591398	0.365117975786538	1	0	acagtcttacctggactctgGaatccattctggtgccacta	8	12	3	0	rs28931589	bycluster	TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	CTNNB1-24361	NM_001098209	exon3	c.G101T	p.G34V	ACTCTGGAATCCA	.	218	74	205	1	G|1.000;T|0.000	70	51	19	0	0	T	41266104	G	T	41266104	3	4	28	1	0	0	0	0	1	0	0	0	4022	1174	41	3	107	3	CTNNB1	3	41266104	Missense_Mutation	SNP	G	TCGA-OR-A5K5-01A-11D-A29I-10	3869512	41266104	156756326	44	4835										
COL7A1	1294	broad.mit.edu	37	chr3	48621170	48621170	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0841121495327103	18	0.232475284102645	1.64647619047619	3.23414965986395	0.929462365591398	0.365117975786538	1	0	ctttttctcctttctttccaGgggggccaacggggccttgg	12	12	2	0	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	COL7A1-160	NM_000094	exon39	c.C4322T	p.P1441L	TTTCCAGGGGGGC	.	64	4	55	0	.	0	0	0	0	0	A	48621170	G	A	48621170	3	1	28	1	0	0	0	0	1	0	0	0	3710	1000	35	3	4832	3	COL7A1	3	48621170	Missense_Mutation	SNP	G	TCGA-OR-A5K5-01A-11D-A29I-10	7355066	48621170	149401260	45	4836										
LRIG1	26018	hgsc.bcm.edu	37	chr3	66550762	66550762	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0841121495327103	18	0.232475284102645	1.64647619047619	3.23414965986395	0.929462365591398	0.365117975786538	1	0	cggctccagccgaagcaaaaGcagccagagaaggagaaggc	14	11	0	2	rs1403626	byfrequency	TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	LRIG1-230	NM_015541	exon1	c.C70G	p.L24V	GCAAAAGCAGCCA	.	7	7	0	0	G|0.252;C|0.748	0	0	0	0	0	C	66550762	G	C	66550762	3	2	28	1	0	0	0	0	1	0	0	0	8971	971	34	3	3287	3	LRIG1	3	66550762	Missense_Mutation	SNP	G	TCGA-OR-A5K5-01A-11D-A29I-10	17929592	66550762	131471668	46	4837										
KIAA1407	57577	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr3	113697118	113697120	+	In_Frame_Del	DEL	TCT	TCT	-													0.0841121495327103	18	0.232475284102645	1.64647619047619	3.23414965986395	0.929462365591398	0.365117975786538	1	0	gttaaaccaggccctgaaaaTcttcttttgaagaaaatgta					novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	TCT	TCT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	KIAA1407-92	NM_020817	exon16	c.2519_2521del	p.840_841del	TGAAAATCTTCTT	.	99	21	74	0	.	0	0	0	0	0	-	113697120	TCT	-	113697118	7	5	28	1	0	1	0	1	0	0	0	0	8250	1435	50	0	297	0	KIAA1407	3	113697118	In_Frame_Del	DEL	TCT	TCGA-OR-A5K5-01A-11D-A29I-10	47146356	113697118	84325312	47	4838										
OSBPL11	114885	broad.mit.edu;bcgsc.ca	37	chr3	125257453	125257453	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0841121495327103	18	0.232475284102645	1.64647619047619	3.23414965986395	0.929462365591398	0.365117975786538	1	0	cataccacagtgttggtgatGttgtgctttacttcagctgt	10	8	1	1	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	OSBPL11-135	NM_022776	exon11	c.C1866T	p.N622N	GGTGATGTTGTGC	.	140	9	131	0	.	4	3	1	0	0	A	125257453	G	A	125257453	2	1	28	1	0	0	0	0	0	0	0	1	11305	1368	48	3		3	OSBPL11	3	125257453	Silent	SNP	G	TCGA-OR-A5K5-01A-11D-A29I-10	11560335	125257453	72764977	48	4839										
PLXND1	23129	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	129290586	129290586	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0841121495327103	18	0.232475284102645	1.64647619047619	3.23414965986395	0.929462365591398	0.365117975786538	1	0	gcatgtaccagaaggtgaggTtgccgtgcacgcagccccga	14	12	0	2	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	PLXND1-90	NM_015103	exon16	c.A3179G	p.N1060S	GTGAGGTTGCCGT	.	422	84	279	2	.	24	21	3	0	0	C	129290586	T	C	129290586	3	2	28	1	0	0	0	0	1	0	0	0	12156	1725	60	4	2682	4	PLXND1	3	129290586	Missense_Mutation	SNP	T	TCGA-OR-A5K5-01A-11D-A29I-10	4033133	129290586	68731844	49	4840										
TMCC1	23023	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	129370603	129370603	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0841121495327103	18	0.232475284102645	1.64647619047619	3.23414965986395	0.929462365591398	0.365117975786538	1	0	tgctgctgctgcagctccatCttggagatgcgcgtctggca	13	12	2	1	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	TMCC1-91	NM_001017395	exon6	c.G1683C	p.K561N	CTCCATCTTGGAG	.	82	17	78	1	.	23	17	5	0	1	G	129370603	C	G	129370603	3	3	28	1	0	0	0	0	1	0	0	0	16029	912	32	3	282	3	TMCC1	3	129370603	Missense_Mutation	SNP	C	TCGA-OR-A5K5-01A-11D-A29I-10	80017	129370603	68651827	50	4841										
RYK	6259	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	133896850	133896850	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0841121495327103	18	0.232475284102645	1.64647619047619	3.23414965986395	0.929462365591398	0.365117975786538	1	0	tttaagattcccccaattcaTgtaaggcaatatcaccatgg	6	10	2	1	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	RYK-1379	.	.	.	.	AATTCATGTAAGG	.	167	86	142	0	.	23	17	6	0	0	C	133896850	T	C	133896850	3	2	28	1	0	0	0	0	1	0	0	0	13802	1464	51	4	603	4	RYK	3	133896850	Missense_Mutation	SNP	T	TCGA-OR-A5K5-01A-11D-A29I-10	4526247	133896850	64125580	51	4842										
COPB2	9276	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	139077931	139077931	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0841121495327103	18	0.232475284102645	1.64647619047619	3.23414965986395	0.929462365591398	0.365117975786538	1	0	aggcttcttttaatccagggAacaggttttcatactctgtt	8	8	3	0	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	COPB2-92	NM_004766	exon19	c.T2393A	p.F798Y	CCAGGGAACAGGT	.	105	21	85	0	.	230	177	52	0	1	T	139077931	A	T	139077931	3	4	28	1	0	0	0	0	1	0	0	0	3735	246	9	5	343	5	COPB2	3	139077931	Missense_Mutation	SNP	A	TCGA-OR-A5K5-01A-11D-A29I-10	5181081	139077931	58944499	52	4843										
ZBTB38	253461	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	141162487	141162487	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0841121495327103	18	0.232475284102645	1.64647619047619	3.23414965986395	0.929462365591398	0.365117975786538	1	0	cctaccattggacaaaatggAggttcattcacaggtccaga	9	10	2	1	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	ZBTB38-25	NM_001080412	exon8	c.A1257T	p.G419G	AAATGGAGGTTCA	.	171	48	138	0	.	0	0	0	0	0	T	141162487	A	T	141162487	2	4	28	1	0	0	0	0	0	0	0	1	17576	291	11	5		5	ZBTB38	3	141162487	Silent	SNP	A	TCGA-OR-A5K5-01A-11D-A29I-10	2084556	141162487	56859943	53	4844										
CCNL1	57018	hgsc.bcm.edu;bcgsc.ca	37	chr3	156868131	156868134	+	Frame_Shift_Del	DEL	AACA	AACA	-													0.0841121495327103	18	0.232475284102645	1.64647619047619	3.23414965986395	0.929462365591398	0.365117975786538	1	0	atagtctctggttgaaatcgAacaaacacattggttcgaag					novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	AACA	AACA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	CCNL1-659	NM_020307	exon6	c.711_714del	p.237_238del	AAATCGAACAAAC	.	204	39	174	1	.	0	0	0	0	0	-	156868134	AACA	-	156868131	7	5	28	1	0	1	0	1	0	0	0	0	2937	233	9	0	890	0	CCNL1	3	156868131	Frame_Shift_Del	DEL	AACA	TCGA-OR-A5K5-01A-11D-A29I-10	15705644	156868131	41154299	54	4845										
CCDC39	339829	ucsc.edu	37	chr3	180337128	180337128	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0841121495327103	18	0.232475284102645	1.64647619047619	3.23414965986395	0.929462365591398	0.365117975786538	1	0	gctcttttttgttcttctagTtgaatttttagctcatactc	5	8	4	1	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	CCDC39-72	NM_181426	exon16	c.A2184T	p.Q728H	TTCTAGTTGAATT	.	34	4	33	0	.	0	0	0	0	0	A	180337128	T	A	180337128	3	1	28	1	0	0	0	0	1	0	0	0	2817	1722	60	5	661	5	CCDC39	3	180337128	Missense_Mutation	SNP	T	TCGA-OR-A5K5-01A-11D-A29I-10	23468997	180337128	17685302	55	4846										
MCCC1	56922	mdanderson.org	37	chr3	182733294	182733294	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0841121495327103	18	0.232475284102645	1.64647619047619	3.23414965986395	0.929462365591398	0.365117975786538	1	0	aggagtgtgtctgttggcctGagcaccttctctgtagaaca	12	9	2	2	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	MCCC1-92	NM_020166	exon19	c.C2110T	p.Q704X	TGGCCTGAGCACC	.	258	45	150	4	.	32	29	3	0	0	A	182733294	G	A	182733294	4	1	28	1	0	0	0	0	0	1	0	0	9402	1299	45	3	71	3	MCCC1	3	182733294	Nonsense_Mutation	SNP	G	TCGA-OR-A5K5-01A-11D-A29I-10	2396166	182733294	15289136	56	4847										
MCF2L2	23101	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr3	183035998	183035999	+	Frame_Shift_Ins	INS	-	-	C													0.0841121495327103	18	0.232475284102645	1.64647619047619	3.23414965986395	0.929462365591398	0.365117975786538	1	0	caaggtcaaggcaaagttttINScgatggcctggaaggtcaga					novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	MCF2L2-293	NM_015078	exon7	c.611_612insG	p.E204fs	AAGTTTTCGATGG	.	199	36	142	0	.	0	0	0	0	0	C	183035999	-	C	183035998	7	5	28	1	0	1	1	0	0	0	0	0	9408	1783	62	0	2829	0	MCF2L2	3	183035998	Frame_Shift_Ins	INS	-	TCGA-OR-A5K5-01A-11D-A29I-10	302704	183035998	14986432	57	4848										
IGF2BP2	10644	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	185407396	185407396	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0841121495327103	18	0.232475284102645	1.64647619047619	3.23414965986395	0.929462365591398	0.365117975786538	1	0	gtagttctcaaactgatgccCgcttagcttctccatggctc	8	13	2	1	rs148304949	alternate_allele	TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	IGF2BP2-226	NM_001007225	exon6	c.G424C	p.G142R	GATGCCCGCTTAG	.	319	41	221	2	C|1.000;T|0.000	17	14	3	0	0	G	185407396	C	G	185407396	3	3	28	1	0	0	0	0	1	0	0	0	7595	652	23	2	1419	2	IGF2BP2	3	185407396	Missense_Mutation	SNP	C	TCGA-OR-A5K5-01A-11D-A29I-10	2371398	185407396	12615034	58	4849										
ARAP2	116984	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	36130245	36130245	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0841121495327103	18	0.232475284102645	1.64647619047619	3.23414965986395	0.929462365591398	0.365117975786538	1	0	tttcaacacagccgtcacatCttcaagctgatgttttccag	6	12	4	1	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	ARAP2-93	NM_015230	exon21	c.G3550C	p.D1184H	TCACATCTTCAAG	.	209	72	222	0	.	0	0	0	0	0	G	36130245	C	G	36130245	3	3	28	1	0	0	0	0	1	0	0	0	839	913	32	3	1616	3	ARAP2	4	36130245	Missense_Mutation	SNP	C	TCGA-OR-A5K5-01A-11D-A29I-10		36130245	155024031	59	4850										
KIAA1211	57482	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	57180955	57180955	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0841121495327103	18	0.232475284102645	1.64647619047619	3.23414965986395	0.929462365591398	0.365117975786538	1	0	ctgaacgactttgaggagagGctcgaagaccaggaacgcct	13	10	0	4	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	KIAA1211-70	NM_020722	exon8	c.G1287T	p.R429S	GGAGAGGCTCGAA	.	220	52	221	1	.	0	0	0	0	0	T	57180955	G	T	57180955	3	4	28	1	0	0	0	0	1	0	0	0	8236	1194	42	3	1305	3	KIAA1211	4	57180955	Missense_Mutation	SNP	G	TCGA-OR-A5K5-01A-11D-A29I-10	21050710	57180955	133973321	60	4851										
LPHN3	23284	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	62936396	62936396	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0841121495327103	18	0.232475284102645	1.64647619047619	3.23414965986395	0.929462365591398	0.365117975786538	1	0	gtgtggccgccacagagagtGttaccaccagcacccagacc	11	15	0	2	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	LPHN3-508	NM_015236	exon23	c.G4180A	p.V1394I	GAGAGTGTTACCA	.	72	31	114	0	.	8	6	2	0	0	A	62936396	G	A	62936396	3	1	28	1	0	0	0	0	1	0	0	0	8944	1377	48	3	4270	3	LPHN3	4	62936396	Missense_Mutation	SNP	G	TCGA-OR-A5K5-01A-11D-A29I-10	5755441	62936396	128217880	61	4852										
ENAM	10117	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	71510144	71510144	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0841121495327103	18	0.232475284102645	1.64647619047619	3.23414965986395	0.929462365591398	0.365117975786538	1	0	ggaacaacattctggaacaaGtttttgaagacaaccagctc	8	9	1	2	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	ENAM-93	NM_031889	exon9	c.G3001T	p.V1001F	GAACAAGTTTTTG	.	320	78	296	0	.	0	0	0	0	0	T	71510144	G	T	71510144	3	4	28	1	0	0	0	0	1	0	0	0	5125	1029	36	3	3031	3	ENAM	4	71510144	Missense_Mutation	SNP	G	TCGA-OR-A5K5-01A-11D-A29I-10	8573748	71510144	119644132	62	4853										
WDFY3	23001	broad.mit.edu	37	chr4	85623617	85623617	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0841121495327103	18	0.232475284102645	1.64647619047619	3.23414965986395	0.929462365591398	0.365117975786538	1	0	cgctgaataccaggcctcgcGcacactgtgaaacatccggt	10	14	0	2	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	WDFY3-93	NM_014991	exon56	c.C8485T	p.R2829C	CCTCGCGCACACT	.	135	5	126	1	.	3	3	0	0	0	A	85623617	G	A	85623617	3	1	28	1	0	0	0	0	1	0	0	0	17308	1087	38	1	2147	1	WDFY3	4	85623617	Missense_Mutation	SNP	G	TCGA-OR-A5K5-01A-11D-A29I-10	14113473	85623617	105530659	63	4854										
DSPP	1834	bcgsc.ca	37	chr4	88537270	88537270	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0841121495327103	18	0.232475284102645	1.64647619047619	3.23414965986395	0.929462365591398	0.365117975786538	1	0	gacagcagtgaaagcagcgaCagcagtgacagcagcgacag	14	10	0	2	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	DSPP-90	NM_014208	exon5	c.C3456T	p.D1152D	CAGCGACAGCAGT	.	591	40	610	3	.	0	0	0	0	0	T	88537270	C	T	88537270	2	4	28	1	0	0	0	0	0	0	0	1	4793	477	17	3		3	DSPP	4	88537270	Silent	SNP	C	TCGA-OR-A5K5-01A-11D-A29I-10	2913653	88537270	102617006	64	4855			1	24		4	3	187	N	C	8.214906e-07
DSPP	1834	ucsc.edu	37	chr4	88537435	88537435	+	Silent	SNP	C	C	T													0.0841121495327103	18	0.232475284102645	1.64647619047619	3.23414965986395	0.929462365591398	0.365117975786538	1	0	agcagcgatagtagtgatagCagtgacagcagtgacagcag					novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	DSPP-90	NM_014208	exon5	c.C3621T	p.S1207S	TGATAGCAGTGAC	.	621	86	643	4	.	0	0	0	0	0	T	88537435	C	T	88537435	2	4	28	1	0	0	0	0	0	0	0	1	4793	709	25	3		3	DSPP	4	88537435	Silent	SNP	C	TCGA-OR-A5K5-01A-11D-A29I-10	165	88537435	102616841	65	4856	39	2	1	24		4	3	187	N	C	8.214906e-07
DSPP	1834	ucsc.edu	37	chr4	88537441	88537441	+	Silent	SNP	C	C	T													0.0841121495327103	18	0.232475284102645	1.64647619047619	3.23414965986395	0.929462365591398	0.365117975786538	1	0	gatagtagtgatagcagtgaCagcagtgacagcagcgacag					novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	DSPP-90	NM_014208	exon5	c.C3627T	p.D1209D	CAGTGACAGCAGT	.	624	139	651	4	.	0	0	0	0	0	T	88537441	C	T	88537441	2	4	28	1	0	0	0	0	0	0	0	1	4793	477	17	3		3	DSPP	4	88537441	Silent	SNP	C	TCGA-OR-A5K5-01A-11D-A29I-10	6	88537441	102616835	66	4857	39	2	1	24		4	3	187	N	C	8.214906e-07
DSPP	1834	ucsc.edu	37	chr4	88537456	88537456	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0841121495327103	18	0.232475284102645	1.64647619047619	3.23414965986395	0.929462365591398	0.365117975786538	1	0	agtgacagcagtgacagcagCgacagcagtgacagcagcga	14	10	0	3	rs111240022	byfrequency	TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	DSPP-90	NM_014208	exon5	c.C3642T	p.S1214S	CAGCAGCGACAGC	.	655	311	639	4	.	0	0	0	0	0	T	88537456	C	T	88537456	2	4	28	1	0	0	0	0	0	0	0	1	4793	767	27	1		1	DSPP	4	88537456	Silent	SNP	C	TCGA-OR-A5K5-01A-11D-A29I-10	15	88537456	102616820	67	4858			1	24		4	3	187	N	C	8.214906e-07
NDST4	64579	ucsc.edu	37	chr4	115769495	115769495	+	Splice_Site	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0841121495327103	18	0.232475284102645	1.64647619047619	3.23414965986395	0.929462365591398	0.365117975786538	1	0	taaataaagtgcagttgttcCtgttacaaaaaaagaaagta	7	4	0	1	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	NDST4-94	NM_022569	exon10	c.1817-1G>T	.	TTGTTCCTGTTAC	.	30	4	24	0	.	0	0	0	0	0	A	115769495	C	A	115769495	5	1	28	1	0	0	0	0	0	0	1	0	10287	695	24	3	826	3	NDST4	4	115769495	Splice_Site	SNP	C	TCGA-OR-A5K5-01A-11D-A29I-10	27232039	115769495	75384781	68	4859										
ANKRD50	57182	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	125592202	125592202	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0841121495327103	18	0.232475284102645	1.64647619047619	3.23414965986395	0.929462365591398	0.365117975786538	1	0	agtcatgccatctttatcacAatgatctacttcagcacctc	4	13	5	1	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	ANKRD50-90	NM_020337	exon4	c.T2230C	p.C744R	TATCACAATGATC	.	98	21	95	0	.	0	0	0	0	0	G	125592202	A	G	125592202	3	3	28	1	0	0	0	0	1	0	0	0	677	130	5	4	2063	4	ANKRD50	4	125592202	Missense_Mutation	SNP	A	TCGA-OR-A5K5-01A-11D-A29I-10	9822707	125592202	65562074	69	4860										
CTNND2	1501	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	11082866	11082866	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0841121495327103	18	0.232475284102645	1.64647619047619	3.23414965986395	0.929462365591398	0.365117975786538	1	0	cgcagcgcagtggccaccgcGcacaccacacggtcattgtc	11	17	1	0	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	CTNND2-293	NM_001332	exon16	c.C2730G	p.C910W	CACCGCGCACACC	.	135	38	116	1	.	0	0	0	0	0	C	11082866	G	C	11082866	3	2	28	1	0	0	0	0	1	0	0	0	4026	1079	38	2	975	2	CTNND2	5	11082866	Missense_Mutation	SNP	G	TCGA-OR-A5K5-01A-11D-A29I-10		11082866	169832394	70	4861										
ZNF131	7690	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	43161463	43161463	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0841121495327103	18	0.232475284102645	1.64647619047619	3.23414965986395	0.929462365591398	0.365117975786538	1	0	ctgagtcattgccatctgcaGaatcagaacctgttgaaatt	8	9	3	4	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	ZNF131-90	NM_003432	exon5	c.G484C	p.E162Q	TCTGCAGAATCAG	.	243	67	214	0	.	3	3	0	0	0	C	43161463	G	C	43161463	3	2	28	1	0	0	0	0	1	0	0	0	17758	943	33	3	498	3	ZNF131	5	43161463	Missense_Mutation	SNP	G	TCGA-OR-A5K5-01A-11D-A29I-10	32078597	43161463	137753797	71	4862										
ISL1	3670	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	50680462	50680462	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0841121495327103	18	0.232475284102645	1.64647619047619	3.23414965986395	0.929462365591398	0.365117975786538	1	0	ttctccggatttggaatggcAtgcggcatgtttgaaatgtg	13	6	1	1	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	ISL1-515	NM_002202	exon2	c.A116C	p.H39P	AATGGCATGCGGC	.	259	43	233	0	.	43	27	16	0	0	C	50680462	A	C	50680462	3	2	28	1	0	0	0	0	1	0	0	0	7877	217	8	5	122	5	ISL1	5	50680462	Missense_Mutation	SNP	A	TCGA-OR-A5K5-01A-11D-A29I-10	7518999	50680462	130234798	72	4863										
ANKRD34B	340120	ucsc.edu	37	chr5	79854554	79854554	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0841121495327103	18	0.232475284102645	1.64647619047619	3.23414965986395	0.929462365591398	0.365117975786538	1	0	gaaagctcctgaacctcgccTttctaaaactgcatgatttc	6	12	1	2	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	ANKRD34B-69	NM_001004441	exon5	c.A1285T	p.R429W	CTCGCCTTTCTAA	.	29	4	25	0	.	0	0	0	0	0	A	79854554	T	A	79854554	3	1	28	1	0	0	0	0	1	0	0	0	663	1608	56	5	263	5	ANKRD34B	5	79854554	Missense_Mutation	SNP	T	TCGA-OR-A5K5-01A-11D-A29I-10	29174092	79854554	101060706	73	4864										
PCDHA7	56141	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	140215777	140215777	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0841121495327103	18	0.232475284102645	1.64647619047619	3.23414965986395	0.929462365591398	0.365117975786538	1	0	gttgacgctgactcaggctaCaacgcgtggctttcgtatga	12	10	1	3	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	PCDHA7-94	NM_031852	exon1	c.C1809T	p.Y603Y	AGGCTACAACGCG	.	561	140	294	0	.	0	0	0	0	0	T	140215777	C	T	140215777	2	4	28	1	0	0	0	0	0	0	0	1	11558	489	17	3		3	PCDHA7	5	140215777	Silent	SNP	C	TCGA-OR-A5K5-01A-11D-A29I-10	60361223	140215777	40699483	74	4865										
PCDHAC2	56134	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	140389355	140389355	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0841121495327103	18	0.232475284102645	1.64647619047619	3.23414965986395	0.929462365591398	0.365117975786538	1	0	ttatcccaggatctcctgcaAtcatctccatccggcaggag	8	14	3	0	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	PCDHAC2-26	NM_018899	exon4	c.A2857G	p.I953V	CCTGCAATCATCT	.	156	42	136	0	.	0	0	0	0	0	G	140389355	A	G	140389355	3	3	28	1	0	0	0	0	1	0	0	0	11562	101	4	4	2959	4	PCDHAC2	5	140389355	Missense_Mutation	SNP	A	TCGA-OR-A5K5-01A-11D-A29I-10	173578	140389355	40525905	75	4866										
ADRA1B	147	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	159344848	159344848	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0841121495327103	18	0.232475284102645	1.64647619047619	3.23414965986395	0.929462365591398	0.365117975786538	1	0	tgctggctacccttcttcatCgctctaccgcttggtaagtt	8	13	3	0	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	ADRA1B-522	NM_000679	exon1	c.C936T	p.I312I	CTTCATCGCTCTA	.	139	31	92	0	.	0	0	0	0	0	T	159344848	C	T	159344848	2	4	28	1	0	0	0	0	0	0	0	1	335	874	31	1		1	ADRA1B	5	159344848	Silent	SNP	C	TCGA-OR-A5K5-01A-11D-A29I-10	18955493	159344848	21570412	76	4867										
DOCK2	1794	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	169097591	169097591	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0841121495327103	18	0.232475284102645	1.64647619047619	3.23414965986395	0.929462365591398	0.365117975786538	1	0	acatcaaggaagtgacagttGagaaaagaaggtatttgcca	11	5	1	3	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	DOCK2-97	NM_004946	exon4	c.G214C	p.E72Q	ACAGTTGAGAAAA	.	97	19	68	0	.	0	0	0	0	0	C	169097591	G	C	169097591	3	2	28	1	0	0	0	0	1	0	0	0	4698	1291	45	3	228	3	DOCK2	5	169097591	Missense_Mutation	SNP	G	TCGA-OR-A5K5-01A-11D-A29I-10	9752743	169097591	11817669	77	4868										
FLT4	2324	broad.mit.edu	37	chr5	180048764	180048764	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0841121495327103	18	0.232475284102645	1.64647619047619	3.23414965986395	0.929462365591398	0.365117975786538	1	0	aagcgggttcccgtgcgcatCgtgcagcgtggacaggttga	16	10	0	1	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	FLT4-1490	NM_182925	exon13	c.G1798A	p.D600N	GCGCATCGTGCAG	.	425	8	242	0	.	0	0	0	0	0	T	180048764	C	T	180048764	3	4	28	1	0	0	0	0	1	0	0	0	5963	884	31	1	2373	1	FLT4	5	180048764	Missense_Mutation	SNP	C	TCGA-OR-A5K5-01A-11D-A29I-10	10951173	180048764	866496	78	4869										
PRPF4B	8899	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	4037635	4037635	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0841121495327103	18	0.232475284102645	1.64647619047619	3.23414965986395	0.929462365591398	0.365117975786538	1	0	atttgatccccttaagaacaCgacctcgagatgatatcctc	6	12	0	4	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	PRPF4B-1308	NM_003913	exon3	c.C1243T	p.R415X	AGAACACGACCTC	.	74	26	82	0	.	0	0	0	0	0	T	4037635	C	T	4037635	4	4	28	1	0	0	0	0	0	1	0	0	12605	528	19	1	1253	1	PRPF4B	6	4037635	Nonsense_Mutation	SNP	C	TCGA-OR-A5K5-01A-11D-A29I-10		4037635	167077432	79	4870										
HIST1H3E	8353	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	26225400	26225400	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0841121495327103	18	0.232475284102645	1.64647619047619	3.23414965986395	0.929462365591398	0.365117975786538	1	0	actatggcgcgtactaagcaGacggctcgtaaatccacagg	11	11	0	1	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	HIST1H3E-68	NM_003532	exon1	c.G18C	p.Q6H	TAAGCAGACGGCT	.	310	88	300	0	.	0	0	0	0	0	C	26225400	G	C	26225400	3	2	28	1	0	0	0	0	1	0	0	0	7180	933	33	3	20	3	HIST1H3E	6	26225400	Missense_Mutation	SNP	G	TCGA-OR-A5K5-01A-11D-A29I-10	22187765	26225400	144889667	80	4871										
EHMT2	10919	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	31854777	31854777	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0841121495327103	18	0.232475284102645	1.64647619047619	3.23414965986395	0.929462365591398	0.365117975786538	1	0	cgggcccgtgctgacctgcaGcagcacatggcagatctcca	12	15	1	2	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	EHMT2-91	NM_006709	exon16	c.C2113T	p.L705L	CCTGCAGCAGCAC	.	61	15	52	1	.	0	0	0	0	0	A	31854777	G	A	31854777	2	1	28	1	0	0	0	0	0	0	0	1	4995	962	34	3		3	EHMT2	6	31854777	Silent	SNP	G	TCGA-OR-A5K5-01A-11D-A29I-10	5629377	31854777	139260290	81	4872										
DAAM2	23500	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	39867948	39867948	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0841121495327103	18	0.232475284102645	1.64647619047619	3.23414965986395	0.929462365591398	0.365117975786538	1	0	gtgtccagcttcagcttctcCgagctggaggaccagctaaa	11	12	2	0	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	DAAM2-228	NM_001201427	exon23	c.C2775A	p.S925S	CTTCTCCGAGCTG	.	108	33	92	1	.	12	6	6	0	0	A	39867948	C	A	39867948	2	1	28	1	0	0	0	0	0	0	0	1	4222	639	23	2		2	DAAM2	6	39867948	Silent	SNP	C	TCGA-OR-A5K5-01A-11D-A29I-10	8013171	39867948	131247119	82	4873										
CUL7	9820	broad.mit.edu	37	chr6	43020160	43020160	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0841121495327103	18	0.232475284102645	1.64647619047619	3.23414965986395	0.929462365591398	0.365117975786538	1	0	cacacactcctccagctgccGaagggctctctgaatgaggg	11	14	1	2	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	CUL7-229	NM_001168370	exon2	c.C523T	p.R175W	GCTGCCGAAGGGC	.	110	4	107	1	.	5	5	0	0	0	A	43020160	G	A	43020160	3	1	28	1	0	0	0	0	1	0	0	0	4066	1057	37	1	4925	1	CUL7	6	43020160	Missense_Mutation	SNP	G	TCGA-OR-A5K5-01A-11D-A29I-10	3152212	43020160	128094907	83	4874										
PKHD1	5314	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	51774212	51774212	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0841121495327103	18	0.232475284102645	1.64647619047619	3.23414965986395	0.929462365591398	0.365117975786538	1	0	actgaacgatcactctggctCccatatccctggatcctagc	7	15	2	1	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	PKHD1-603	NM_170724	exon40	c.G6551T	p.G2184V	CTGGCTCCCATAT	.	177	52	165	0	.	0	0	0	0	0	A	51774212	C	A	51774212	3	1	28	1	0	0	0	0	1	0	0	0	12000	855	30	3	5824	3	PKHD1	6	51774212	Missense_Mutation	SNP	C	TCGA-OR-A5K5-01A-11D-A29I-10	8754052	51774212	119340855	84	4875										
DST	667	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	56336987	56336987	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0841121495327103	18	0.232475284102645	1.64647619047619	3.23414965986395	0.929462365591398	0.365117975786538	1	0	caatttgtgtctgtgacccaGagggatacaagcttgatgct	11	8	1	3	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	DST-523	NM_015548	exon75	c.C14159T	p.S4720F	GACCCAGAGGGAT	.	182	56	178	0	.	20	16	4	0	0	A	56336987	G	A	56336987	3	1	28	1	0	0	0	0	1	0	0	0	4794	942	33	3	1396	3	DST	6	56336987	Missense_Mutation	SNP	G	TCGA-OR-A5K5-01A-11D-A29I-10	4562775	56336987	114778080	85	4876										
SYNCRIP	10492	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	86324650	86324650	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0841121495327103	18	0.232475284102645	1.64647619047619	3.23414965986395	0.929462365591398	0.365117975786538	1	0	ctggttgtacccatcagcttTgcgctttcctcctacatttc	6	14	1	0	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	SYNCRIP-92	NM_006372	exon11	c.A1696G	p.K566E	CAGCTTTGCGCTT	.	80	22	122	1	.	53	30	23	0	0	C	86324650	T	C	86324650	3	2	28	1	0	0	0	0	1	0	0	0	15481	1821	63	4	225	4	SYNCRIP	6	86324650	Missense_Mutation	SNP	T	TCGA-OR-A5K5-01A-11D-A29I-10	29987663	86324650	84790417	86	4877										
GABRR2	2570	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	89978901	89978901	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0841121495327103	18	0.232475284102645	1.64647619047619	3.23414965986395	0.929462365591398	0.365117975786538	1	0	tgttgctggcgctggagaaaGctagcctctcatccttccag	11	12	1	1	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	GABRR2-68	NM_002043	exon4	c.C341G	p.A114G	GAGAAAGCTAGCC	.	154	41	161	0	.	1	1	0	0	0	C	89978901	G	C	89978901	3	2	28	1	0	0	0	0	1	0	0	0	6196	971	34	3	1080	3	GABRR2	6	89978901	Missense_Mutation	SNP	G	TCGA-OR-A5K5-01A-11D-A29I-10	3654251	89978901	81136166	87	4878										
RNF217	154214	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	125404012	125404012	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0841121495327103	18	0.232475284102645	1.64647619047619	3.23414965986395	0.929462365591398	0.365117975786538	1	0	attttttcttatccctaggtTtatttgtatttcctatctat	3	7	2	0	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	RNF217-68	NM_152553	exon9	c.T797G	p.F266C	CTAGGTTTATTTG	.	71	18	59	0	.	0	0	0	0	0	G	125404012	T	G	125404012	3	3	28	1	0	0	0	0	1	0	0	0	13516	1841	64	5	823	5	RNF217	6	125404012	Missense_Mutation	SNP	T	TCGA-OR-A5K5-01A-11D-A29I-10	35425111	125404012	45711055	88	4879										
BCLAF1	9774	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	136582461	136582461	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0841121495327103	18	0.232475284102645	1.64647619047619	3.23414965986395	0.929462365591398	0.365117975786538	1	0	tttccatggtctcttcttcaTcttcaacaatcccatcccct	2	16	5	0	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	BCLAF1-228	NM_014739	exon12	c.A2699T	p.D900V	TCTTCATCTTCAA	.	125	15	90	0	.	40	40	0	0	0	A	136582461	T	A	136582461	3	1	28	1	0	0	0	0	1	0	0	0	1384	1435	50	5	71	5	BCLAF1	6	136582461	Missense_Mutation	SNP	T	TCGA-OR-A5K5-01A-11D-A29I-10	11178449	136582461	34532606	89	4880										
MTHFD1L	25902	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	151281517	151281517	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0841121495327103	18	0.232475284102645	1.64647619047619	3.23414965986395	0.929462365591398	0.365117975786538	1	0	aaggatggtggtggccagtgAcaaaagcgggcagcctgtga	17	7	0	2	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	MTHFD1L-292	NM_001242767	exon18	c.A1913T	p.D638V	CCAGTGACAAAAG	.	226	66	194	0	.	4	3	1	0	0	T	151281517	A	T	151281517	3	4	28	1	0	0	0	0	1	0	0	0	9956	275	10	5	1980	5	MTHFD1L	6	151281517	Missense_Mutation	SNP	A	TCGA-OR-A5K5-01A-11D-A29I-10	14699056	151281517	19833550	90	4881										
TBP	6908	broad.mit.edu	37	chr6	170871004	170871004	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0841121495327103	18	0.232475284102645	1.64647619047619	3.23414965986395	0.929462365591398	0.365117975786538	1	0	gagcaacaaaggcagcagcaGcaacaacaacagcagcagca	10	12	0	0	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	TBP-91	NM_003194	exon3	c.G180A	p.Q60Q	GCAGCAGCAACAA	.	62	8	56	0	.	11	11	0	0	0	A	170871004	G	A	170871004	2	1	28	1	0	0	0	0	0	0	0	1	15681	962	34	3		3	TBP	6	170871004	Silent	SNP	G	TCGA-OR-A5K5-01A-11D-A29I-10	19589487	170871004	244063	91	4882										
TBP	6908	mdanderson.org	37	chr6	170871043	170871043	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0841121495327103	18	0.232475284102645	1.64647619047619	3.23414965986395	0.929462365591398	0.365117975786538	1	0	cagcagcagcagcagcaacaGcaacagcagcagcagcagca	11	14	0	0	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	TBP-91	NM_003194	exon3	c.G219A	p.Q73Q	GCAACAGCAACAG	.	64	15	47	1	.	73	61	12	0	0	A	170871043	G	A	170871043	2	1	28	1	0	0	0	0	0	0	0	1	15681	962	34	3		3	TBP	6	170871043	Silent	SNP	G	TCGA-OR-A5K5-01A-11D-A29I-10	39	170871043	244024	92	4883										
THSD7A	221981	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	11485690	11485690	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0841121495327103	18	0.232475284102645	1.64647619047619	3.23414965986395	0.929462365591398	0.365117975786538	1	0	caatgaagattgaattaccaTggctgttacatctagatgtt	8	6	1	4	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	THSD7A-71	NM_015204	exon13	c.A3062G	p.H1021R	TTACCATGGCTGT	.	213	42	159	0	.	0	0	0	0	0	C	11485690	T	C	11485690	3	2	28	1	0	0	0	0	1	0	0	0	15916	1464	51	4	1971	4	THSD7A	7	11485690	Missense_Mutation	SNP	T	TCGA-OR-A5K5-01A-11D-A29I-10		11485690	147652973	93	4884										
BZW2	28969	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	16734601	16734601	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0841121495327103	18	0.232475284102645	1.64647619047619	3.23414965986395	0.929462365591398	0.365117975786538	1	0	gcagaaggagctccaggagcGtctttctcaggaatgcccga	13	11	2	1	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	BZW2-92	NM_014038	exon8	c.G794A	p.R265H	AGGAGCGTCTTTC	.	63	15	51	0	.	99	75	24	0	0	A	16734601	G	A	16734601	3	1	28	1	0	0	0	0	1	0	0	0	1582	1145	40	1	820	1	BZW2	7	16734601	Missense_Mutation	SNP	G	TCGA-OR-A5K5-01A-11D-A29I-10	5248911	16734601	142404062	94	4885										
SP8	221833	hgsc.bcm.edu;mdanderson.org	37	chr7	20824953	20824953	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0841121495327103	18	0.232475284102645	1.64647619047619	3.23414965986395	0.929462365591398	0.365117975786538	1	0	gcggaggagccgccgccgccGcccccgccgccgccgccgct	15	23	0	0	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	SP8-91	NM_182700	exon2	c.C483G	p.G161G	GCCGCCGCCCCCG	.	29	16	11	0	.	0	0	0	0	0	C	20824953	G	C	20824953	2	2	28	1	0	0	0	0	0	0	0	1	15005	1074	38	2		2	SP8	7	20824953	Silent	SNP	G	TCGA-OR-A5K5-01A-11D-A29I-10	4090352	20824953	138313710	95	4886										
SP4	6671	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	21469550	21469550	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0841121495327103	18	0.232475284102645	1.64647619047619	3.23414965986395	0.929462365591398	0.365117975786538	1	0	tcaggctcaagttgtaacaaCcctaccaattaacattggag	7	10	2	0	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	SP4-95	NM_003112	exon3	c.C767T	p.T256I	TAACAACCCTACC	.	261	60	193	0	.	0	0	0	0	0	T	21469550	C	T	21469550	3	4	28	1	0	0	0	0	1	0	0	0	15001	507	18	3	777	3	SP4	7	21469550	Missense_Mutation	SNP	C	TCGA-OR-A5K5-01A-11D-A29I-10	644597	21469550	137669113	96	4887										
KLHL7	55975	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	23163401	23163401	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0841121495327103	18	0.232475284102645	1.64647619047619	3.23414965986395	0.929462365591398	0.365117975786538	1	0	ttttcctttgattagaaaacGttgtgtgacgtgatcctcat	8	7	1	4	rs150640353		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	KLHL7-90	NM_001172428	exon2	c.G126A	p.T42T	GAAAACGTTGTGT	.	98	18	103	0	G|1.000;A|0.000	1	0	1	0	0	A	23163401	G	A	23163401	2	1	28	1	0	0	0	0	0	0	0	1	8415	1132	40	1		1	KLHL7	7	23163401	Silent	SNP	G	TCGA-OR-A5K5-01A-11D-A29I-10	1693851	23163401	135975262	97	4888										
PKD1L1	168507	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	47897371	47897371	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0841121495327103	18	0.232475284102645	1.64647619047619	3.23414965986395	0.929462365591398	0.365117975786538	1	0	acagagctctgaaggttgtaAtgaagaagggtccggaactc	13	7	1	4	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	PKD1L1-145	NM_138295	exon28	c.T4422C	p.H1474H	GTTGTAATGAAGA	.	127	26	81	0	.	0	0	0	0	0	G	47897371	A	G	47897371	2	3	28	1	0	0	0	0	0	0	0	1	11993	98	4	4		4	PKD1L1	7	47897371	Silent	SNP	A	TCGA-OR-A5K5-01A-11D-A29I-10	24733970	47897371	111241292	98	4889										
ABCA13	154664	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	48327569	48327569	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0841121495327103	18	0.232475284102645	1.64647619047619	3.23414965986395	0.929462365591398	0.365117975786538	1	0	tctggcagaaaacccttcctGgaccaaggacattttgtgtg	10	10	1	1	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	ABCA13-521	NM_152701	exon20	c.G8849A	p.W2950X	CTTCCTGGACCAA	.	87	25	63	1	.	0	0	0	0	0	A	48327569	G	A	48327569	4	1	28	1	0	0	0	0	0	1	0	0	31	1357	47	3	8756	3	ABCA13	7	48327569	Nonsense_Mutation	SNP	G	TCGA-OR-A5K5-01A-11D-A29I-10	430198	48327569	110811094	99	4890										
GRB10	2887	bcgsc.ca	37	chr7	50682537	50682537	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0841121495327103	18	0.232475284102645	1.64647619047619	3.23414965986395	0.929462365591398	0.365117975786538	1	0	cgatcagggagaagatgttgCtgtcctccaggtcggccagc	14	11	1	2	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	GRB10-1272	NM_005311	exon9	c.G1025A	p.S342N	ATGTTGCTGTCCT	.	126	6	86	0	.	0	0	0	0	0	T	50682537	C	T	50682537	3	4	28	1	0	0	0	0	1	0	0	0	6777	797	28	3	791	3	GRB10	7	50682537	Missense_Mutation	SNP	C	TCGA-OR-A5K5-01A-11D-A29I-10	2354968	50682537	108456126	100	4891										
CROT	54677	ucsc.edu	37	chr7	86988623	86988623	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0841121495327103	18	0.232475284102645	1.64647619047619	3.23414965986395	0.929462365591398	0.365117975786538	1	0	tgcaccagaaattgcttgaaAgagcaaaaggaaaaagaaat	9	5	0	4	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	CROT-280	NM_001143935	exon5	c.A301G	p.R101G	CTTGAAAGAGCAA	.	40	4	63	0	.	8	8	0	0	0	G	86988623	A	G	86988623	3	3	28	1	0	0	0	0	1	0	0	0	3900	64	3	4	311	4	CROT	7	86988623	Missense_Mutation	SNP	A	TCGA-OR-A5K5-01A-11D-A29I-10	36306086	86988623	72150040	101	4892										
AKAP9	10142	broad.mit.edu	37	chr7	91667778	91667778	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0841121495327103	18	0.232475284102645	1.64647619047619	3.23414965986395	0.929462365591398	0.365117975786538	1	0	ttgctcaacaaactgaactgTctagaatatctgggggaaaa	9	7	3	2	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	AKAP9-755	NM_005751	exon17	c.T4384C	p.S1462P	GAACTGTCTAGAA	.	95	3	130	0	.	1	1	0	0	0	C	91667778	T	C	91667778	3	2	28	1	0	0	0	0	1	0	0	0	459	1667	58	4	4450	4	AKAP9	7	91667778	Missense_Mutation	SNP	T	TCGA-OR-A5K5-01A-11D-A29I-10	4679155	91667778	67470885	102	4893										
AASS	10157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	121769438	121769438	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0841121495327103	18	0.232475284102645	1.64647619047619	3.23414965986395	0.929462365591398	0.365117975786538	1	0	ttttagaatctcatccaacaAgcccatattggcctcctgag	6	12	1	2	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	AASS-92	NM_005763	exon3	c.T364C	p.L122L	CCAACAAGCCCAT	.	24	8	34	0	.	0	0	0	0	0	G	121769438	A	G	121769438	2	3	28	1	0	0	0	0	0	0	0	1	24	69	3	4		4	AASS	7	121769438	Silent	SNP	A	TCGA-OR-A5K5-01A-11D-A29I-10	30101660	121769438	37369225	103	4894										
ATP6V0E2	155066	hgsc.bcm.edu	37	chr7	149571095	149571095	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0841121495327103	18	0.232475284102645	1.64647619047619	3.23414965986395	0.929462365591398	0.365117975786538	1	0	cgctgcccggctggggacccGcgcacctgcagcgcccgctg	15	19	0	0	rs79377053		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	.	NM_001100592	exon1	c.G88A	p.A30T	GGACCCGCGCACC	.	23	10	2	0	G|0.870;A|0.130	6	3	3	0	0	A	149571095	G	A	149571095	3	1	28	1	0	0	0	0	1	0	0	0	1177	1087	38	1	90	1	ATP6V0E2	7	149571095	Missense_Mutation	SNP	G	TCGA-OR-A5K5-01A-11D-A29I-10	27801657	149571095	9567568	104	4895										
CSMD1	64478	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr8	2857496	2857496	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0841121495327103	18	0.232475284102645	1.64647619047619	3.23414965986395	0.929462365591398	0.365117975786538	1	0	ttacggacacagacaggcgtTtgtccagaccacttgtggtc	11	11	0	2	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	CSMD1-86	NM_033225	exon53	c.A8187G	p.Q2729Q	AGGCGTTTGTCCA	.	129	21	137	0	.	0	0	0	0	0	C	2857496	T	C	2857496	2	2	28	1	0	0	0	0	0	0	0	1	3950	1838	64	4		4	CSMD1	8	2857496	Silent	SNP	T	TCGA-OR-A5K5-01A-11D-A29I-10		2857496	143506526	105	4896										
ANGPT2	285	broad.mit.edu	37	chr8	6378801	6378801	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0841121495327103	18	0.232475284102645	1.64647619047619	3.23414965986395	0.929462365591398	0.365117975786538	1	0	caccgtggcagtcactatttTtttttctagttcttcaatga	6	9	4	1	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	ANGPT2-91	NM_001118887	exon4	c.A697G	p.K233E	CTATTTTTTTTTC	.	129	4	107	0	.	3	3	0	0	0	C	6378801	T	C	6378801	3	2	28	1	0	0	0	0	1	0	0	0	611	1850	64	4	817	4	ANGPT2	8	6378801	Missense_Mutation	SNP	T	TCGA-OR-A5K5-01A-11D-A29I-10	3521305	6378801	139985221	106	4897										
GOT1L1	137362	broad.mit.edu	37	chr8	37794838	37794838	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0841121495327103	18	0.232475284102645	1.64647619047619	3.23414965986395	0.929462365591398	0.365117975786538	1	0	cggggtccatgcatagcttcTtggggtcccagacagagtat	13	10	1	2	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	GOT1L1-23	NM_152413	exon4	c.A476G	p.K159R	AGCTTCTTGGGGT	.	123	4	73	0	.	0	0	0	0	0	C	37794838	T	C	37794838	3	2	28	1	0	0	0	0	1	0	0	0	6600	1609	56	4	658	4	GOT1L1	8	37794838	Missense_Mutation	SNP	T	TCGA-OR-A5K5-01A-11D-A29I-10	31416037	37794838	108569184	107	4898										
LSM1	27257	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr8	38021296	38021298	+	In_Frame_Del	DEL	TTC	TTC	-													0.0841121495327103	18	0.232475284102645	1.64647619047619	3.23414965986395	0.929462365591398	0.365117975786538	1	0	gtctgctgttccaccctttgTtcttctagaatttcttcaat					novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	TTC	TTC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	LSM1-90	NM_014462	exon4	c.292_294del	p.98_98del	CCTTTGTTCTTCT	.	112	26	74	0	.	0	0	0	0	0	-	38021298	TTC	-	38021296	7	5	28	1	0	1	0	1	0	0	0	0	9077	1722	60	0	111	0	LSM1	8	38021296	In_Frame_Del	DEL	TTC	TCGA-OR-A5K5-01A-11D-A29I-10	226458	38021296	108342726	108	4899										
SLCO5A1	81796	ucsc.edu	37	chr8	70617290	70617290	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0841121495327103	18	0.232475284102645	1.64647619047619	3.23414965986395	0.929462365591398	0.365117975786538	1	0	ttgtataagggatgtttatgCcccctagattaatgctttca	8	7	1	1	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	SLCO5A1-94	NM_001146008	exon5	c.G1598A	p.G533D	TTTATGCCCCCTA	.	24	4	20	0	.	0	0	0	0	0	T	70617290	C	T	70617290	3	4	28	1	0	0	0	0	1	0	0	0	14766	739	26	3	968	3	SLCO5A1	8	70617290	Missense_Mutation	SNP	C	TCGA-OR-A5K5-01A-11D-A29I-10	32595994	70617290	75746732	109	4900										
ANGPT1	284	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	108334173	108334173	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0841121495327103	18	0.232475284102645	1.64647619047619	3.23414965986395	0.929462365591398	0.365117975786538	1	0	ttgtggactgtgtccatcagCtccagttgctgcttctgaag	11	10	2	1	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	ANGPT1-521	NM_001199859	exon4	c.G759A	p.E253E	CATCAGCTCCAGT	.	209	39	182	2	.	1	1	0	0	0	T	108334173	C	T	108334173	2	4	28	1	0	0	0	0	0	0	0	1	610	796	28	3		3	ANGPT1	8	108334173	Silent	SNP	C	TCGA-OR-A5K5-01A-11D-A29I-10	37716883	108334173	38029849	110	4901										
CSMD3	114788	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr8	113323220	113323220	+	Silent	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0841121495327103	18	0.232475284102645	1.64647619047619	3.23414965986395	0.929462365591398	0.365117975786538	1	0	acttcaccttgacaggcaggGactggcgcatcccatgcatg	11	13	1	1	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	CSMD3-1132	NM_198123	exon50	c.C7872A	p.V2624V	GGCAGGGACTGGC	.	127	30	88	0	.	0	0	0	0	0	T	113323220	G	T	113323220	2	4	28	1	0	0	0	0	0	0	0	1	3952	1161	41	3		3	CSMD3	8	113323220	Silent	SNP	G	TCGA-OR-A5K5-01A-11D-A29I-10	4989047	113323220	33040802	111	4902										
MAL2	114569	hgsc.bcm.edu	37	chr8	120220776	120220776	+	Splice_Site	DEL	G	G	-													0.0841121495327103	18	0.232475284102645	1.64647619047619	3.23414965986395	0.929462365591398	0.365117975786538	1	0	cgtgtccttcccgccgccccGgggtcaccctgcccgccggc					novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	.	NM_052886	exon1	c.64+1G>-	.	CGCCCCGGGGTCA	.	18	18	2	2	.	0	0	0	0	0	-	120220776	G	-	120220776	8	5	28	1	0	1	0	1	0	0	1	0	9228	1116	39	0	67	0	MAL2	8	120220776	Splice_Site	DEL	G	TCGA-OR-A5K5-01A-11D-A29I-10	6897556	120220776	26143246	112	4903										
SQLE	6713	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr8	126019726	126019726	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0841121495327103	18	0.232475284102645	1.64647619047619	3.23414965986395	0.929462365591398	0.365117975786538	1	0	gataaagagactggagatatCaaggtgagaaataccaaatg	11	4	1	3	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	SQLE-523	NM_003129	exon4	c.C819G	p.I273M	AGATATCAAGGTG	.	120	28	87	0	.	0	0	0	0	0	G	126019726	C	G	126019726	3	3	28	1	0	0	0	0	1	0	0	0	15165	816	29	3		3	SQLE	8	126019726	Missense_Mutation	SNP	C	TCGA-OR-A5K5-01A-11D-A29I-10	5798950	126019726	20344296	113	4904										
ZNF696	79943	hgsc.bcm.edu	37	chr8	144378868	144378868	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0841121495327103	18	0.232475284102645	1.64647619047619	3.23414965986395	0.929462365591398	0.365117975786538	1	0	ggcttcttccggcaccagcgActccacacgggcgagaagcc	12	16	1	1	rs7386259	byfrequency	TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	ZNF696-90	NM_030895	exon3	c.A1023G	p.R341R	CCAGCGACTCCAC	.	10	10	0	0	A|0.118;G|0.882	3	0	3	0	0	G	144378868	A	G	144378868	2	3	28	1	0	0	0	0	0	0	0	1	18136	262	10	4		4	ZNF696	8	144378868	Silent	SNP	A	TCGA-OR-A5K5-01A-11D-A29I-10	18359142	144378868	1985154	114	4905										
PLEC	5339	hgsc.bcm.edu	37	chr8	144998169	144998169	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0841121495327103	18	0.232475284102645	1.64647619047619	3.23414965986395	0.929462365591398	0.365117975786538	1	0	cgccgccgctcctcctccgcCgccagctgccgctgcctcgc	10	24	0	0	rs1140522	byfrequency	TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	PLEC-141	NM_201380	exon31	c.G6339A	p.A2113A	CTCCGCCGCCAGC	.	8	8	0	0	C|0.740;T|0.260	0	0	0	0	0	T	144998169	C	T	144998169	2	4	28	1	0	0	0	0	0	0	0	1	12081	639	23	1		1	PLEC	8	144998169	Silent	SNP	C	TCGA-OR-A5K5-01A-11D-A29I-10	619301	144998169	1365853	115	4906			2	25		3	3	201	N	T_C_A	9.50108e-07
PLEC	5339	hgsc.bcm.edu	37	chr8	144998190	144998190	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0841121495327103	18	0.232475284102645	1.64647619047619	3.23414965986395	0.929462365591398	0.365117975786538	1	0	gccagctgccgctgcctcgcAgcctccagctcggcctgctc	11	20	0	0	rs2857829	byfrequency	TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	PLEC-141	NM_201380	exon31	c.T6318C	p.A2106A	CCTCGCAGCCTCC	.	19	18	0	0	A|0.738;G|0.262	4	0	4	0	0	G	144998190	A	G	144998190	2	3	28	1	0	0	0	0	0	0	0	1	12081	175	7	4		4	PLEC	8	144998190	Silent	SNP	A	TCGA-OR-A5K5-01A-11D-A29I-10	21	144998190	1365832	116	4907			2	25		3	3	201	N	T_C_A	9.50108e-07
PLEC	5339	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr8	144998369	144998369	+	Nonsense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0841121495327103	18	0.232475284102645	1.64647619047619	3.23414965986395	0.929462365591398	0.365117975786538	1	0	cgtgtcctccaccagcccctTctgccgctccagctcgctgt	8	20	1	0	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	PLEC-141	NM_201380	exon31	c.A6139T	p.K2047X	GCCCCTTCTGCCG	.	110	40	29	0	.	4	4	0	0	0	A	144998369	T	A	144998369	4	1	28	1	0	0	0	0	0	1	0	0	12081	1792	62	5	7923	5	PLEC	8	144998369	Nonsense_Mutation	SNP	T	TCGA-OR-A5K5-01A-11D-A29I-10	179	144998369	1365653	117	4908			2	25		3	3	201	N	T_C_A	9.50108e-07
ZNF517	340385	hgsc.bcm.edu	37	chr8	146033347	146033347	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0841121495327103	18	0.232475284102645	1.64647619047619	3.23414965986395	0.929462365591398	0.365117975786538	1	0	gggtgcccaggacggcggcgTggggcagggcgccctgctcg	21	13	0	0	rs2976653		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	ZNF517-90	NM_213605	exon5	c.T1046C	p.V349A	GCGGCGTGGGGCA	.	14	14	0	0	G|0.992;C|0.006	2	0	2	0	0	C	146033347	T	C	146033347	3	2	28	1	0	0	0	0	1	0	0	0	17998	1696	59	4	1060	4	ZNF517	8	146033347	Missense_Mutation	SNP	T	TCGA-OR-A5K5-01A-11D-A29I-10	1034978	146033347	330675	118	4909										
ARID3C	138715	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr9	34627865	34627865	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0841121495327103	18	0.232475284102645	1.64647619047619	3.23414965986395	0.929462365591398	0.365117975786538	1	0	gcatcttcctcttcctcagcCccaacattccccaaggcccc	4	21	3	0	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	ARID3C-91	NM_001017363	exon1	c.G147T	p.G49G	CTCAGCCCCAACA	.	92	51	71	0	.	0	0	0	0	0	A	34627865	C	A	34627865	2	1	28	1	0	0	0	0	0	0	0	1	918	610	22	3		3	ARID3C	9	34627865	Silent	SNP	C	TCGA-OR-A5K5-01A-11D-A29I-10		34627865	106585566	119	4910										
C9orf131	138724	broad.mit.edu	37	chr9	35045280	35045280	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0841121495327103	18	0.232475284102645	1.64647619047619	3.23414965986395	0.929462365591398	0.365117975786538	1	0	cagggcggaacaagggtctcAgagaggggagaaaatgaagg	18	5	1	3	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	C9orf131-90	NM_203299	exon2	c.A2654G	p.Q885R	GGTCTCAGAGAGG	.	103	4	88	0	.	0	0	0	0	0	G	35045280	A	G	35045280	3	3	28	1	0	0	0	0	1	0	0	0	2463	188	7	4	2676	4	C9orf131	9	35045280	Missense_Mutation	SNP	A	TCGA-OR-A5K5-01A-11D-A29I-10	417415	35045280	106168151	120	4911										
TMEM2	23670	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr9	74347358	74347358	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0841121495327103	18	0.232475284102645	1.64647619047619	3.23414965986395	0.929462365591398	0.365117975786538	1	0	cttctccttggatcacaataTtccgggtaagaattccaacc	6	12	2	1	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	TMEM2-92	NM_013390	exon7	c.A1472G	p.N491S	ACAATATTCCGGG	.	100	28	88	0	.	8	8	0	0	0	C	74347358	T	C	74347358	3	2	28	1	0	0	0	0	1	0	0	0	16158	1493	52	4	2751	4	TMEM2	9	74347358	Missense_Mutation	SNP	T	TCGA-OR-A5K5-01A-11D-A29I-10	39302078	74347358	66866073	121	4912										
KIF27	55582	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	86518378	86518378	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0841121495327103	18	0.232475284102645	1.64647619047619	3.23414965986395	0.929462365591398	0.365117975786538	1	0	tttcatctatacggtctgacTcggggctgaagtttacagtg	11	8	3	2	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	KIF27-523	NM_017576	exon4	c.A1055C	p.E352A	TCTGACTCGGGGC	.	32	6	35	0	.	0	0	0	0	0	G	86518378	T	G	86518378	3	3	28	1	0	0	0	0	1	0	0	0	8317	1551	54	5	3210	5	KIF27	9	86518378	Missense_Mutation	SNP	T	TCGA-OR-A5K5-01A-11D-A29I-10	12171020	86518378	54695053	122	4913										
PTPDC1	138639	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr9	96859984	96859984	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0841121495327103	18	0.232475284102645	1.64647619047619	3.23414965986395	0.929462365591398	0.365117975786538	1	0	tgaaatagaaaagacaatgtCtgagatggtcaccatgcagc	10	7	2	4	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	PTPDC1-227	NM_001253829	exon6	c.C1136T	p.S379F	CAATGTCTGAGAT	.	132	38	124	0	.	0	0	0	0	0	T	96859984	C	T	96859984	3	4	28	1	0	0	0	0	1	0	0	0	12806	913	32	3	1238	3	PTPDC1	9	96859984	Missense_Mutation	SNP	C	TCGA-OR-A5K5-01A-11D-A29I-10	10341606	96859984	44353447	123	4914										
DFNB31	25861	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr9	117169063	117169063	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0841121495327103	18	0.232475284102645	1.64647619047619	3.23414965986395	0.929462365591398	0.365117975786538	1	0	gtggctggaggtcctctctcCccagcttccttggctggcct	12	15	1	0	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	DFNB31-95	NM_001173425	exon9	c.G1808C	p.G603A	TCTCTCCCCAGCT	.	151	30	105	0	.	10	8	2	0	0	G	117169063	C	G	117169063	3	3	28	1	0	0	0	0	1	0	0	0	4466	623	22	3	931	3	DFNB31	9	117169063	Missense_Mutation	SNP	C	TCGA-OR-A5K5-01A-11D-A29I-10	20309079	117169063	24044368	124	4915										
TNC	3371	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr9	117792645	117792645	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0841121495327103	18	0.232475284102645	1.64647619047619	3.23414965986395	0.929462365591398	0.365117975786538	1	0	tcgtgtctccattcagcattGcttgggagcagtccttgggg	13	10	2	0	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	TNC-517	NM_002160	exon24	c.C5960T	p.A1987V	AGCATTGCTTGGG	.	169	46	113	0	.	1	1	0	0	0	A	117792645	G	A	117792645	3	1	28	1	0	0	0	0	1	0	0	0	16307	1319	46	3	665	3	TNC	9	117792645	Missense_Mutation	SNP	G	TCGA-OR-A5K5-01A-11D-A29I-10	623582	117792645	23420786	125	4916										
FPGS	2356	hgsc.bcm.edu	37	chr9	130565267	130565267	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0841121495327103	18	0.232475284102645	1.64647619047619	3.23414965986395	0.929462365591398	0.365117975786538	1	0	cagcggcgtctgcgcgcggcAtaacgacccaggtcgcggcg	16	15	1	0	rs10760502	byfrequency	TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	FPGS-90	NM_004957	exon1	c.A64G	p.I22V	CGCGGCATAACGA	.	8	8	0	0	A|0.235;G|0.765	2	0	2	0	0	G	130565267	A	G	130565267	3	3	28	1	0	0	0	0	1	0	0	0	6055	217	8	4	66	4	FPGS	9	130565267	Missense_Mutation	SNP	A	TCGA-OR-A5K5-01A-11D-A29I-10	12772622	130565267	10648164	126	4917										
GLE1	2733	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr9	131271255	131271255	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0841121495327103	18	0.232475284102645	1.64647619047619	3.23414965986395	0.929462365591398	0.365117975786538	1	0	gcaggagaaccaacctctgtCtgagacttcgccatcctcta	8	14	3	2	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	GLE1-22	NM_001499	exon2	c.C200G	p.S67C	CTCTGTCTGAGAC	.	331	58	215	1	.	9	8	0	1	0	G	131271255	C	G	131271255	3	3	28	1	0	0	0	0	1	0	0	0	6455	913	32	3	206	3	GLE1	9	131271255	Missense_Mutation	SNP	C	TCGA-OR-A5K5-01A-11D-A29I-10	705988	131271255	9942176	127	4918										
GLE1	2733	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr9	131271329	131271329	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0841121495327103	18	0.232475284102645	1.64647619047619	3.23414965986395	0.929462365591398	0.365117975786538	1	0	ttcccaaatctcctgacgcaAgctctgccttttccccagcc	5	18	2	1	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	GLE1-22	NM_001499	exon2	c.A274G	p.S92G	GACGCAAGCTCTG	.	335	53	202	0	.	7	7	0	0	0	G	131271329	A	G	131271329	3	3	28	1	0	0	0	0	1	0	0	0	6455	72	3	4	280	4	GLE1	9	131271329	Missense_Mutation	SNP	A	TCGA-OR-A5K5-01A-11D-A29I-10	74	131271329	9942102	128	4919										
CCDC3	83643	bcgsc.ca	37	chr10	12940564	12940564	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0841121495327103	18	0.232475284102645	1.64647619047619	3.23414965986395	0.929462365591398	0.365117975786538	1	0	gcaaggacctcttgaccttcTtcactcgctcccggagctgc	9	16	3	1	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	CCDC3-91	NM_031455	exon3	c.A665T	p.K222M	ACCTTCTTCACTC	.	137	6	133	0	.	0	0	0	0	0	A	12940564	T	A	12940564	3	1	28	1	0	0	0	0	1	0	0	0	2810	1609	56	5	151	5	CCDC3	10	12940564	Missense_Mutation	SNP	T	TCGA-OR-A5K5-01A-11D-A29I-10		12940564	122594183	129	4920										
HSPA14	51182	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr10	14909858	14909859	+	Frame_Shift_Del	DEL	TA	TA	-													0.0841121495327103	18	0.232475284102645	1.64647619047619	3.23414965986395	0.929462365591398	0.365117975786538	1	0	cttcagtgtgccttgaactcTatgagtctgatgggaagaac					novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	TA	TA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	HSPA14-291	NM_016299	exon12	c.1330_1331del	p.444_444del	GAACTCTATGAGT	.	158	60	120	0	.	0	0	0	0	0	-	14909859	TA	-	14909858	7	5	28	1	0	1	0	1	0	0	0	0	7428	1522	53	0	1376	0	HSPA14	10	14909858	Frame_Shift_Del	DEL	TA	TCGA-OR-A5K5-01A-11D-A29I-10	1969294	14909858	120624889	130	4921										
OLAH	55301	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr10	15103749	15103749	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0841121495327103	18	0.232475284102645	1.64647619047619	3.23414965986395	0.929462365591398	0.365117975786538	1	0	ccttaaggcttcctggaagaGaaagcagagttgaagaacct	11	8	0	4	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	OLAH-68	NM_018324	exon5	c.G349C	p.E117Q	GGAAGAGAAAGCA	.	150	35	144	0	.	0	0	0	0	0	C	15103749	G	C	15103749	3	2	28	1	0	0	0	0	1	0	0	0	10880	943	33	3	363	3	OLAH	10	15103749	Missense_Mutation	SNP	G	TCGA-OR-A5K5-01A-11D-A29I-10	193891	15103749	120430998	131	4922										
FRMPD2	143162	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr10	49440201	49440201	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0841121495327103	18	0.232475284102645	1.64647619047619	3.23414965986395	0.929462365591398	0.365117975786538	1	0	taggtgagttcctcgaggttGgcaaaggatgtcacggcatt	14	7	1	1	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	FRMPD2-153	NM_001018071	exon10	c.C1125T	p.A375A	GAGGTTGGCAAAG	.	138	47	124	0	.	0	0	0	0	0	A	49440201	G	A	49440201	2	1	28	1	0	0	0	0	0	0	0	1	6077	1335	47	3		3	FRMPD2	10	49440201	Silent	SNP	G	TCGA-OR-A5K5-01A-11D-A29I-10	34336452	49440201	86094546	132	4923										
ANK3	288	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr10	61835910	61835910	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0841121495327103	18	0.232475284102645	1.64647619047619	3.23414965986395	0.929462365591398	0.365117975786538	1	0	agtttttatcggcgaagacaTtgtccgaaaggatctaattg	10	6	1	1	rs201650334	alternate_allele	TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	ANK3-107	NM_020987	exon37	c.A4729T	p.M1577L	AAGACATTGTCCG	.	340	72	255	0	.	0	0	0	0	0	A	61835910	T	A	61835910	3	1	28	1	0	0	0	0	1	0	0	0	622	1493	52	5	8745	5	ANK3	10	61835910	Missense_Mutation	SNP	T	TCGA-OR-A5K5-01A-11D-A29I-10	12395709	61835910	73698837	133	4924										
CYP26C1	340665	broad.mit.edu	37	chr10	94828150	94828150	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0841121495327103	18	0.232475284102645	1.64647619047619	3.23414965986395	0.929462365591398	0.365117975786538	1	0	cgagacggctgcggtgtaccGcagccctcccgaaggcttcg	14	15	0	1	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	CYP26C1-90	NM_183374	exon6	c.G1265A	p.R422H	TGTACCGCAGCCC	.	85	4	73	0	.	0	0	0	0	0	A	94828150	G	A	94828150	3	1	28	1	0	0	0	0	1	0	0	0	4163	1087	38	1	1287	1	CYP26C1	10	94828150	Missense_Mutation	SNP	G	TCGA-OR-A5K5-01A-11D-A29I-10	32992240	94828150	40706597	134	4925										
C11orf35	256329	hgsc.bcm.edu	37	chr11	560710	560710	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0841121495327103	18	0.232475284102645	1.64647619047619	3.23414965986395	0.929462365591398	0.365117975786538	1	0	cctgcccgcgggccgcagccAccgcatttccgcgtttttcg	11	18	0	0	rs200922487		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	C11orf35-69	NM_173573	exon1	c.T7C	p.W3R	GCAGCCACCGCAT	.	12	8	3	0	.	0	0	0	0	0	G	560710	A	G	560710	3	3	28	1	0	0	0	0	1	0	0	0	1642	159	6	4	1953	4	C11orf35	11	560710	Missense_Mutation	SNP	A	TCGA-OR-A5K5-01A-11D-A29I-10		560710	134445806	135	4926										
DCDC1	341019	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	31349747	31349747	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0841121495327103	18	0.232475284102645	1.64647619047619	3.23414965986395	0.929462365591398	0.365117975786538	1	0	tcagggctactttgctgtaaTacttccattgcttcagtcaa	7	10	3	0	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	DCDC1-91	NM_181807	exon3	c.A81G	p.V27V	CTGTAATACTTCC	.	50	6	59	0	.	0	0	0	0	0	C	31349747	T	C	31349747	2	2	28	1	0	0	0	0	0	0	0	1	4290	1393	49	4		4	DCDC1	11	31349747	Silent	SNP	T	TCGA-OR-A5K5-01A-11D-A29I-10	30789037	31349747	103656769	136	4927										
OR4C11	219429	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	55371204	55371204	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0841121495327103	18	0.232475284102645	1.64647619047619	3.23414965986395	0.929462365591398	0.365117975786538	1	0	tgaatgcaagatgacaatatAtgaaattatcaaaatcatga	6	4	2	5	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	OR4C11-69	NM_001004700	exon1	c.T646C	p.Y216H	CAATATATGAAAT	.	95	35	96	0	.	0	0	0	0	0	G	55371204	A	G	55371204	3	3	28	1	0	0	0	0	1	0	0	0	11074	449	16	4	288	4	OR4C11	11	55371204	Missense_Mutation	SNP	A	TCGA-OR-A5K5-01A-11D-A29I-10	24021457	55371204	79635312	137	4928										
CD248	57124	broad.mit.edu;bcgsc.ca	37	chr11	66084195	66084195	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0841121495327103	18	0.232475284102645	1.64647619047619	3.23414965986395	0.929462365591398	0.365117975786538	1	0	ccctgtggtccacgtgaagcCgcgcagtgggcgctgcagct	15	14	0	1	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	CD248-154	NM_020404	exon1	c.G304A	p.G102S	TGAAGCCGCGCAG	.	49	8	21	0	.	1	1	0	0	0	T	66084195	C	T	66084195	3	4	28	1	0	0	0	0	1	0	0	0	2995	652	23	1	1973	1	CD248	11	66084195	Missense_Mutation	SNP	C	TCGA-OR-A5K5-01A-11D-A29I-10	10712991	66084195	68922321	138	4929										
RAB6A	5870	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	73441848	73441848	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0841121495327103	18	0.232475284102645	1.64647619047619	3.23414965986395	0.929462365591398	0.365117975786538	1	0	actgtcatacatgaatctggTgatcaaagatgtctttccaa	7	8	4	3	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	RAB6A-227	NM_002869	exon2	c.A91G	p.T31A	ATCTGGTGATCAA	.	227	60	226	0	.	9	4	5	0	0	C	73441848	T	C	73441848	3	2	28	1	0	0	0	0	1	0	0	0	12986	1696	59	4	673	4	RAB6A	11	73441848	Missense_Mutation	SNP	T	TCGA-OR-A5K5-01A-11D-A29I-10	7357653	73441848	61564668	139	4930										
TAF1D	79101	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	93471576	93471576	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0841121495327103	18	0.232475284102645	1.64647619047619	3.23414965986395	0.929462365591398	0.365117975786538	1	0	gaacactttcaggtgtacgaAcaaattttcgaatggggttt	10	6	1	0	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	TAF1D-90	NM_024116	exon3	c.T158G	p.V53G	GTACGAACAAATT	.	79	42	69	1	.	45	23	22	0	0	C	93471576	A	C	93471576	3	2	28	1	0	0	0	0	1	0	0	0	15559	43	2	5	694	5	TAF1D	11	93471576	Missense_Mutation	SNP	A	TCGA-OR-A5K5-01A-11D-A29I-10	20029728	93471576	41534940	140	4931										
MRE11A	4361	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	94201026	94201026	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0841121495327103	18	0.232475284102645	1.64647619047619	3.23414965986395	0.929462365591398	0.365117975786538	1	0	ctggtgagaattacccagacGttcccgttcagcattttcaa	8	11	2	2	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	MRE11A-722	NM_005591	exon10	c.C1051T	p.R351C	CCAGACGTTCCCG	.	139	28	169	1	.	11	10	1	0	0	A	94201026	G	A	94201026	3	1	28	1	0	0	0	0	1	0	0	0	9787	1145	40	1	1119	1	MRE11A	11	94201026	Missense_Mutation	SNP	G	TCGA-OR-A5K5-01A-11D-A29I-10	729450	94201026	40805490	141	4932										
VWF	7450	broad.mit.edu;bcgsc.ca	37	chr12	6128740	6128740	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0841121495327103	18	0.232475284102645	1.64647619047619	3.23414965986395	0.929462365591398	0.365117975786538	1	0	cagcctggaggagccatccaGcaggaagaccaggtccagta	13	12	0	1	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	VWF-163	NM_000552	exon28	c.C3844G	p.L1282V	CATCCAGCAGGAA	.	221	9	241	0	.	8	8	0	0	0	C	6128740	G	C	6128740	3	2	28	1	0	0	0	0	1	0	0	0	17284	962	34	3	4697	3	VWF	12	6128740	Missense_Mutation	SNP	G	TCGA-OR-A5K5-01A-11D-A29I-10		6128740	127723155	142	4933										
C12orf57	113246	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	7053766	7053766	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0841121495327103	18	0.232475284102645	1.64647619047619	3.23414965986395	0.929462365591398	0.365117975786538	1	0	gtgctgcccgtggccacgcaGatccagcaggaggttatcaa	13	12	1	1	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	C12orf57-90	NM_138425	exon2	c.G180T	p.Q60H	CACGCAGATCCAG	.	358	93	248	0	.	193	171	22	0	0	T	7053766	G	T	7053766	3	4	28	1	0	0	0	0	1	0	0	0	1705	933	33	3	186	3	C12orf57	12	7053766	Missense_Mutation	SNP	G	TCGA-OR-A5K5-01A-11D-A29I-10	925026	7053766	126798129	143	4934										
PIK3C2G	5288	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	18491453	18491453	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0841121495327103	18	0.232475284102645	1.64647619047619	3.23414965986395	0.929462365591398	0.365117975786538	1	0	ttacagatgcagtaaatgaaCtaagtctaattcttcagaga	7	6	3	3	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	PIK3C2G-1312	NM_004570	exon9	c.C1366T	p.L456L	AATGAACTAAGTC	.	139	29	192	0	.	0	0	0	0	0	T	18491453	C	T	18491453	2	4	28	1	0	0	0	0	0	0	0	1	11940	564	20	3		3	PIK3C2G	12	18491453	Silent	SNP	C	TCGA-OR-A5K5-01A-11D-A29I-10	11437687	18491453	115360442	144	4935										
SLCO1C1	53919	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	20864373	20864373	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0841121495327103	18	0.232475284102645	1.64647619047619	3.23414965986395	0.929462365591398	0.365117975786538	1	0	ttccactctcagcatctctcCgtgtctcctagagtcaagca	6	15	4	1	rs181627657		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	SLCO1C1-97	NM_017435	exon5	c.C458T	p.P153L	TCTCTCCGTGTCT	.	109	36	120	1	C|0.999;T|0.000	0	0	0	0	0	T	20864373	C	T	20864373	3	4	28	1	0	0	0	0	1	0	0	0	14760	652	23	1	472	1	SLCO1C1	12	20864373	Missense_Mutation	SNP	C	TCGA-OR-A5K5-01A-11D-A29I-10	2372920	20864373	112987522	145	4936										
ATF1	466	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	51207830	51207830	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0841121495327103	18	0.232475284102645	1.64647619047619	3.23414965986395	0.929462365591398	0.365117975786538	1	0	ggagccttacagttggcaagTccaggcacagatggagtaca	13	9	0	1	rs186674535	alternate_allele	TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	ATF1-685	NM_005171	exon5	c.T366C	p.S122S	GGCAAGTCCAGGC	.	302	75	189	0	T|0.999;G|0.000	32	25	7	0	0	C	51207830	T	C	51207830	2	2	28	1	0	0	0	0	0	0	0	1	1080	1664	58	4		4	ATF1	12	51207830	Silent	SNP	T	TCGA-OR-A5K5-01A-11D-A29I-10	30343457	51207830	82644065	146	4937										
OR6C2	341416	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	55846356	55846356	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0841121495327103	18	0.232475284102645	1.64647619047619	3.23414965986395	0.929462365591398	0.365117975786538	1	0	ggcagccatgtcctatgaccGctatgtggccatctgtaaac	10	12	1	1	rs187562104		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	OR6C2-70	NM_054105	exon1	c.G359A	p.R120H	ATGACCGCTATGT	.	103	19	85	0	G|0.999;A|0.001	0	0	0	0	0	A	55846356	G	A	55846356	3	1	28	1	0	0	0	0	1	0	0	0	11220	1087	38	1	361	1	OR6C2	12	55846356	Missense_Mutation	SNP	G	TCGA-OR-A5K5-01A-11D-A29I-10	4638526	55846356	78005539	147	4938										
AVPR1A	552	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	63544072	63544072	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0841121495327103	18	0.232475284102645	1.64647619047619	3.23414965986395	0.929462365591398	0.365117975786538	1	0	agacgaagtactgcggcgtgCtcagcacgaagctcagcacc	12	13	2	1	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	AVPR1A-946	NM_000706	exon1	c.G545T	p.S182I	GGCGTGCTCAGCA	.	282	59	161	0	.	0	0	0	0	0	A	63544072	C	A	63544072	3	1	28	1	0	0	0	0	1	0	0	0	1232	797	28	3	719	3	AVPR1A	12	63544072	Missense_Mutation	SNP	C	TCGA-OR-A5K5-01A-11D-A29I-10	7697716	63544072	70307823	148	4939										
LLPH	84298	broad.mit.edu	37	chr12	66517671	66517671	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0841121495327103	18	0.232475284102645	1.64647619047619	3.23414965986395	0.929462365591398	0.365117975786538	1	0	gcttttgctttgcttttcccCtttcttttctctcgctttgc	5	13	2	0	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	LLPH-514	NM_032338	exon3	c.G339A	p.K113K	TTTCCCCTTTCTT	.	135	5	69	0	.	273	258	15	0	0	T	66517671	C	T	66517671	2	4	28	1	0	0	0	0	0	0	0	1	8859	680	24	3		3	LLPH	12	66517671	Silent	SNP	C	TCGA-OR-A5K5-01A-11D-A29I-10	2973599	66517671	67334224	149	4940										
HCFC2	29915	hgsc.bcm.edu;bcgsc.ca	37	chr12	104459979	104459990	+	In_Frame_Del	DEL	AGATATCCCTCC	AGATATCCCTCC	-													0.0841121495327103	18	0.232475284102645	1.64647619047619	3.23414965986395	0.929462365591398	0.365117975786538	1	0	tttctgccagctgttagaggAgatatccctccaggctgtgc					novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	AGATATCCCTCC	AGATATCCCTCC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	HCFC2-92	NM_013320	exon2	c.198_209del	p.66_70del	TAGAGGAGATATC	.	134	5	98	0	.	0	0	0	0	0	-	104459990	AGATATCCCTCC	-	104459979	7	5	28	1	0	1	0	1	0	0	0	0	7014	291	11	0	204	0	HCFC2	12	104459979	In_Frame_Del	DEL	AGATATCCCTCC	TCGA-OR-A5K5-01A-11D-A29I-10	37942308	104459979	29391916	150	4941										
GAS6	2621	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr13	114529971	114529971	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0841121495327103	18	0.232475284102645	1.64647619047619	3.23414965986395	0.929462365591398	0.365117975786538	1	0	gtaagagccaagacttactgTagtccaggctgtagaaggcg	13	8	0	3	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	GAS6-650	NM_000820	exon12	c.A1475G	p.Y492C	TTACTGTAGTCCA	.	125	53	149	0	.	0	0	0	0	0	C	114529971	T	C	114529971	3	2	28	1	0	0	0	0	1	0	0	0	6269	1638	57	4	577	4	GAS6	13	114529971	Missense_Mutation	SNP	T	TCGA-OR-A5K5-01A-11D-A29I-10		114529971	639907	151	4942										
EFS	10278	bcgsc.ca	37	chr14	23834217	23834217	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0841121495327103	18	0.232475284102645	1.64647619047619	3.23414965986395	0.929462365591398	0.365117975786538	1	0	ccactccctggtggactcacCgacgtggcaatggccatggc	12	15	1	0	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	EFS-153	NM_032459	exon1	c.G18A	p.S6S	ACTCACCGACGTG	.	186	70	198	4	.	0	0	0	0	0	T	23834217	C	T	23834217	2	4	28	1	0	0	0	0	0	0	0	1	4970	666	23	1		1	EFS	14	23834217	Silent	SNP	C	TCGA-OR-A5K5-01A-11D-A29I-10		23834217	83515323	152	4943										
PCK2	5106	ucsc.edu	37	chr14	24568382	24568382	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0841121495327103	18	0.232475284102645	1.64647619047619	3.23414965986395	0.929462365591398	0.365117975786538	1	0	tccctgctgggcaagaagtgCtttgccctacgcatcgcctc	10	15	0	1	rs200826292		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	PCK2-227	NM_004563	exon5	c.C789T	p.C263C	GAAGTGCTTTGCC	.	45	4	48	0	C|0.999;T|0.001	24	24	0	0	0	T	24568382	C	T	24568382	2	4	28	1	0	0	0	0	0	0	0	1	11611	805	28	3		3	PCK2	14	24568382	Silent	SNP	C	TCGA-OR-A5K5-01A-11D-A29I-10	734165	24568382	82781158	153	4944										
NPAS3	64067	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	33684463	33684463	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0841121495327103	18	0.232475284102645	1.64647619047619	3.23414965986395	0.929462365591398	0.365117975786538	1	0	aaagaaaactttgagttctaTgaattggccaagttgttgcc	9	6	1	3	rs138614075		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	NPAS3-93	NM_001164749	exon3	c.T216C	p.Y72Y	GTTCTATGAATTG	.	97	30	141	1	T|1.000;C|0.000	0	0	0	0	0	C	33684463	T	C	33684463	2	2	28	1	0	0	0	0	0	0	0	1	10593	1471	51	4		4	NPAS3	14	33684463	Silent	SNP	T	TCGA-OR-A5K5-01A-11D-A29I-10	9116081	33684463	73665077	154	4945										
ARID4A	5926	broad.mit.edu	37	chr14	58831394	58831394	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0841121495327103	18	0.232475284102645	1.64647619047619	3.23414965986395	0.929462365591398	0.365117975786538	1	0	aacggaaaatactaggacaaTcatcgccagagaaaaaaata	7	7	1	1	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	ARID4A-231	NM_002892	exon20	c.T2587A	p.S863T	GGACAATCATCGC	.	104	3	109	0	.	3	3	0	0	0	A	58831394	T	A	58831394	3	1	28	1	0	0	0	0	1	0	0	0	919	1435	50	5	2661	5	ARID4A	14	58831394	Missense_Mutation	SNP	T	TCGA-OR-A5K5-01A-11D-A29I-10	25146931	58831394	48518146	155	4946										
PAPLN	89932	broad.mit.edu	37	chr14	73712814	73712814	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0841121495327103	18	0.232475284102645	1.64647619047619	3.23414965986395	0.929462365591398	0.365117975786538	1	0	gcgcccgggacttccgggccGagcagtgcgcggagttcgac	17	14	0	0	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	PAPLN-70	NM_173462	exon5	c.G265T	p.E89X	CGGGCCGAGCAGT	.	105	6	49	0	.	0	0	0	0	0	T	73712814	G	T	73712814	4	4	28	1	0	0	0	0	0	1	0	0	11457	1059	37	2	279	2	PAPLN	14	73712814	Nonsense_Mutation	SNP	G	TCGA-OR-A5K5-01A-11D-A29I-10	14881420	73712814	33636726	156	4947										
ABCD4	5826	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr14	74763089	74763089	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0841121495327103	18	0.232475284102645	1.64647619047619	3.23414965986395	0.929462365591398	0.365117975786538	1	0	gtgaacggggagatgatgagCttgctggccatgctgctgag	17	7	0	5	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	ABCD4-292	NM_005050	exon5	c.G489T	p.K163N	GATGAGCTTGCTG	.	78	23	77	0	.	4	3	1	0	0	A	74763089	C	A	74763089	3	1	28	1	0	0	0	0	1	0	0	0	63	796	28	3	1391	3	ABCD4	14	74763089	Missense_Mutation	SNP	C	TCGA-OR-A5K5-01A-11D-A29I-10	1050275	74763089	32586451	157	4948										
TMEM63C	57156	broad.mit.edu	37	chr14	77685876	77685876	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0841121495327103	18	0.232475284102645	1.64647619047619	3.23414965986395	0.929462365591398	0.365117975786538	1	0	tactccttcctccggaaagcTgcgtgggactatgggcgcct	12	13	0	0	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	.	NM_020431	exon4	c.T186A	p.A62A	GAAAGCTGCGTGG	.	115	4	138	0	.	1	1	0	0	0	A	77685876	T	A	77685876	2	1	28	1	0	0	0	0	0	0	0	1	16229	1567	55	5		5	TMEM63C	14	77685876	Silent	SNP	T	TCGA-OR-A5K5-01A-11D-A29I-10	2922787	77685876	29663664	158	4949										
UNC13C	440279	broad.mit.edu	37	chr15	54586242	54586242	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0841121495327103	18	0.232475284102645	1.64647619047619	3.23414965986395	0.929462365591398	0.365117975786538	1	0	gaggaccttgagtggagaaaTggatgtctggtacaacttag	14	5	1	2	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	UNC13C-51	NM_001080534	exon9	c.T3968A	p.M1323K	GAGAAATGGATGT	.	73	4	84	0	.	0	0	0	0	0	A	54586242	T	A	54586242	3	1	28	1	0	0	0	0	1	0	0	0	17024	1464	51	5	4002	5	UNC13C	15	54586242	Missense_Mutation	SNP	T	TCGA-OR-A5K5-01A-11D-A29I-10		54586242	47945150	159	4950										
RORA	6095	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	60797800	60797800	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0841121495327103	18	0.232475284102645	1.64647619047619	3.23414965986395	0.929462365591398	0.365117975786538	1	0	tattggcaggtttccagatgCgatttagatatattctgtgc	10	6	1	2	rs199818399		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	RORA-290	NM_134260	exon7	c.G948A	p.S316S	CAGATGCGATTTA	.	99	31	109	0	.	18	12	6	0	0	T	60797800	C	T	60797800	2	4	28	1	0	0	0	0	0	0	0	1	13563	755	27	1		1	RORA	15	60797800	Silent	SNP	C	TCGA-OR-A5K5-01A-11D-A29I-10	6211558	60797800	41733592	160	4951										
IGDCC4	57722	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr15	65703500	65703500	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0841121495327103	18	0.232475284102645	1.64647619047619	3.23414965986395	0.929462365591398	0.365117975786538	1	0	gctagtggctgggacagccaCagggaaccattgggcagcag	16	10	0	0	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	IGDCC4-93	NM_020962	exon2	c.G279T	p.L93L	CAGCCACAGGGAA	.	195	62	157	0	.	0	0	0	0	0	A	65703500	C	A	65703500	2	1	28	1	0	0	0	0	0	0	0	1	7590	465	17	3		3	IGDCC4	15	65703500	Silent	SNP	C	TCGA-OR-A5K5-01A-11D-A29I-10	4905700	65703500	36827892	161	4952										
SLC28A1	9154	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr15	85438269	85438269	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0841121495327103	18	0.232475284102645	1.64647619047619	3.23414965986395	0.929462365591398	0.365117975786538	1	0	tcctcaccttcctgggccacCgcctgctgaaacggcttctg	9	17	2	1	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	SLC28A1-93	NM_201651	exon6	c.C376T	p.R126C	GGCCACCGCCTGC	.	151	40	122	0	.	0	0	0	0	0	T	85438269	C	T	85438269	3	4	28	1	0	0	0	0	1	0	0	0	14566	652	23	1	390	1	SLC28A1	15	85438269	Missense_Mutation	SNP	C	TCGA-OR-A5K5-01A-11D-A29I-10	19734769	85438269	17093123	162	4953										
MSLN	10232	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	818658	818658	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0841121495327103	18	0.232475284102645	1.64647619047619	3.23414965986395	0.929462365591398	0.365117975786538	1	0	ctctctgtagaggccctctcGgggacgccctgcctcctagg	12	16	2	1	rs201197109		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	MSLN-91	NM_013404	exon17	c.G1818A	p.S606S	CCTCTCGGGGACG	.	63	19	43	0	G|0.999;A|0.001	0	0	0	0	0	A	818658	G	A	818658	2	1	28	1	0	0	0	0	0	0	0	1	9909	1103	39	1		1	MSLN	16	818658	Silent	SNP	G	TCGA-OR-A5K5-01A-11D-A29I-10		818658	89536095	163	4954										
PAQR4	124222	broad.mit.edu	37	chr16	3019781	3019782	+	Frame_Shift_Ins	INS	-	-	C													0.0841121495327103	18	0.232475284102645	1.64647619047619	3.23414965986395	0.929462365591398	0.365117975786538	1	0	ccggcccgccagcagcggctINScgggctgcctgcgcagcctc					novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	PAQR4-68	NM_152341	exon1	c.106_107insC	p.S36fs	AGCGGCTCGGGCT	.	204	7	65	0	.	0	0	0	0	0	C	3019782	-	C	3019781	7	5	28	1	0	1	1	0	0	0	0	0	11466	1551	54	0	108	0	PAQR4	16	3019781	Frame_Shift_Ins	INS	-	TCGA-OR-A5K5-01A-11D-A29I-10	2201123	3019781	87334972	164	4955										
SPNS1	83985	broad.mit.edu	37	chr16	28992830	28992830	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0841121495327103	18	0.232475284102645	1.64647619047619	3.23414965986395	0.929462365591398	0.365117975786538	1	0	tggtggccgttctgctgctgTtcctggtagtgcgggagccg	17	10	1	0	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	SPNS1-90	NM_001142451	exon6	c.T703C	p.F235L	CTGCTGTTCCTGG	.	128	3	99	0	.	86	85	1	0	0	C	28992830	T	C	28992830	3	2	28	1	0	0	0	0	1	0	0	0	15111	1725	60	4	725	4	SPNS1	16	28992830	Missense_Mutation	SNP	T	TCGA-OR-A5K5-01A-11D-A29I-10	25973049	28992830	61361923	165	4956										
LONP2	83752	ucsc.edu	37	chr16	48295433	48295433	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0841121495327103	18	0.232475284102645	1.64647619047619	3.23414965986395	0.929462365591398	0.365117975786538	1	0	gatgacattgtcatgctagaGaaaaaaatacgaacatctag	8	6	2	2	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	LONP2-90	NM_031490	exon5	c.G822A	p.E274E	GCTAGAGAAAAAA	.	260	2	223	0	.	20	14	6	0	0	A	48295433	G	A	48295433	2	1	28	1	0	0	0	0	0	0	0	1	8920	933	33	3		3	LONP2	16	48295433	Silent	SNP	G	TCGA-OR-A5K5-01A-11D-A29I-10	19302603	48295433	42059320	166	4957										
SALL1	6299	broad.mit.edu	37	chr16	51171231	51171231	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0841121495327103	18	0.232475284102645	1.64647619047619	3.23414965986395	0.929462365591398	0.365117975786538	1	0	ttggagggatgccaccgttcTgaatgacggagatctcgttg	14	8	2	3	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	SALL1-98	NM_002968	exon3	c.A3767C	p.Q1256P	CCGTTCTGAATGA	.	95	4	87	0	.	0	0	0	0	0	G	51171231	T	G	51171231	3	3	28	1	0	0	0	0	1	0	0	0	13845	1580	55	5	211	5	SALL1	16	51171231	Missense_Mutation	SNP	T	TCGA-OR-A5K5-01A-11D-A29I-10	2875798	51171231	39183522	167	4958										
NTN1	9423	broad.mit.edu;bcgsc.ca	37	chr17	9143050	9143050	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0841121495327103	18	0.232475284102645	1.64647619047619	3.23414965986395	0.929462365591398	0.365117975786538	1	0	gtataagcagggcacgagccGcatccgccgcggtgaccaga	14	13	0	2	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	NTN1-90	NM_004822	exon7	c.G1580C	p.R527P	CGAGCCGCATCCG	.	128	60	163	3	.	0	0	0	0	0	C	9143050	G	C	9143050	3	2	28	1	0	0	0	0	1	0	0	0	10729	1087	38	2	1602	2	NTN1	17	9143050	Missense_Mutation	SNP	G	TCGA-OR-A5K5-01A-11D-A29I-10		9143050	72052160	168	4959										
MYO15A	51168	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	18062646	18062646	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0841121495327103	18	0.232475284102645	1.64647619047619	3.23414965986395	0.929462365591398	0.365117975786538	1	0	gcagcctcagcaagatggccAccgacatgttcctaggtgtg	12	12	1	1	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	MYO15A-97	NM_016239	exon53	c.A9214G	p.T3072A	ATGGCCACCGACA	.	83	33	101	0	.	0	0	0	0	0	G	18062646	A	G	18062646	3	3	28	1	0	0	0	0	1	0	0	0	10091	159	6	4	9420	4	MYO15A	17	18062646	Missense_Mutation	SNP	A	TCGA-OR-A5K5-01A-11D-A29I-10	8919596	18062646	63132564	169	4960										
LRRC37B	114659	broad.mit.edu	37	chr17	30348897	30348897	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0841121495327103	18	0.232475284102645	1.64647619047619	3.23414965986395	0.929462365591398	0.365117975786538	1	0	cctccagaactccgggtgaaCgcagatgagcctccagggcc	12	15	0	4	rs200519924		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	LRRC37B-92	NM_052888	exon1	c.C732T	p.N244N	GGTGAACGCAGAT	.	105	4	118	0	C|0.999;T|0.000	1	1	0	0	0	T	30348897	C	T	30348897	2	4	28	1	0	0	0	0	0	0	0	1	9021	535	19	1		1	LRRC37B	17	30348897	Silent	SNP	C	TCGA-OR-A5K5-01A-11D-A29I-10	12286251	30348897	50846313	170	4961										
LASP1	3927	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	37070576	37070576	+	Splice_Site	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0841121495327103	18	0.232475284102645	1.64647619047619	3.23414965986395	0.929462365591398	0.365117975786538	1	0	ctagtgccttctgaccttgcAgataaaataccatgaggagt	9	9	1	3	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	LASP1-522	NM_006148	exon5	c.358-2A>C	.	CCTTGCAGATAAA	.	385	90	259	0	.	0	0	0	0	0	C	37070576	A	C	37070576	5	2	28	1	0	0	0	0	0	0	1	0	8659	202	7	5	374	5	LASP1	17	37070576	Splice_Site	SNP	A	TCGA-OR-A5K5-01A-11D-A29I-10	6721679	37070576	44124634	171	4962										
ARL4D	379	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	41477602	41477602	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0841121495327103	18	0.232475284102645	1.64647619047619	3.23414965986395	0.929462365591398	0.365117975786538	1	0	ctctcactcatgtgcaaggcTgcagcgctgtggacggtctg	13	12	3	0	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	ARL4D-228	NM_001661	exon2	c.T502C	p.C168R	CAAGGCTGCAGCG	.	68	24	60	0	.	3	2	1	0	0	C	41477602	T	C	41477602	3	2	28	1	0	0	0	0	1	0	0	0	939	1580	55	4	504	4	ARL4D	17	41477602	Missense_Mutation	SNP	T	TCGA-OR-A5K5-01A-11D-A29I-10	4407026	41477602	39717608	172	4963										
HEXIM2	124790	broad.mit.edu;bcgsc.ca	37	chr17	43247039	43247039	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0841121495327103	18	0.232475284102645	1.64647619047619	3.23414965986395	0.929462365591398	0.365117975786538	1	0	agcagctgcaggcgtgcaccGgccagcagtcctgccgccag	14	16	0	0	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	HEXIM2-90	NM_144608	exon4	c.G724A	p.G242S	TGCACCGGCCAGC	.	138	7	119	1	.	12	11	1	0	0	A	43247039	G	A	43247039	3	1	28	1	0	0	0	0	1	0	0	0	7098	1116	39	1	730	1	HEXIM2	17	43247039	Missense_Mutation	SNP	G	TCGA-OR-A5K5-01A-11D-A29I-10	1769437	43247039	37948171	173	4964										
EVPL	2125	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	74004100	74004100	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0841121495327103	18	0.232475284102645	1.64647619047619	3.23414965986395	0.929462365591398	0.365117975786538	1	0	actcctccccacagggccccGaggtggtgacctcctcccag	10	19	0	1	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	EVPL-93	NM_001988	exon22	c.C5186T	p.S1729L	GGCCCCGAGGTGG	.	119	33	81	0	.	0	0	0	0	0	A	74004100	G	A	74004100	3	1	28	1	0	0	0	0	1	0	0	0	5305	1059	37	1	919	1	EVPL	17	74004100	Missense_Mutation	SNP	G	TCGA-OR-A5K5-01A-11D-A29I-10	30757061	74004100	7191110	174	4965										
ST6GALNAC1	55808	ucsc.edu;bcgsc.ca	37	chr17	74625598	74625598	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0841121495327103	18	0.232475284102645	1.64647619047619	3.23414965986395	0.929462365591398	0.365117975786538	1	0	ggcaccttgtcctgctcctcCggcggtgcctggttggcctc	13	16	0	0	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	ST6GALNAC1-90	NM_018414	exon2	c.G327A	p.P109P	CTCCTCCGGCGGT	.	240	55	212	2	.	1	0	1	0	0	T	74625598	C	T	74625598	2	4	28	1	0	0	0	0	0	0	0	1	15260	639	23	1		1	ST6GALNAC1	17	74625598	Silent	SNP	C	TCGA-OR-A5K5-01A-11D-A29I-10	621498	74625598	6569612	175	4966										
ST6GALNAC1	55808	broad.mit.edu	37	chr17	74625786	74625786	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0841121495327103	18	0.232475284102645	1.64647619047619	3.23414965986395	0.929462365591398	0.365117975786538	1	0	ttctttaatgttctctgtgcGttgatgcctagggacagaga	11	7	2	2	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	ST6GALNAC1-90	NM_018414	exon2	c.C139A	p.R47S	CTGTGCGTTGATG	.	49	8	66	0	.	0	0	0	0	0	T	74625786	G	T	74625786	3	4	28	1	0	0	0	0	1	0	0	0	15260	1145	40	2	1695	2	ST6GALNAC1	17	74625786	Missense_Mutation	SNP	G	TCGA-OR-A5K5-01A-11D-A29I-10	188	74625786	6569424	176	4967										
B3GNTL1	146712	hgsc.bcm.edu	37	chr17	80915250	80915257	+	Frame_Shift_Del	DEL	GGCAGTCA	GGCAGTCA	-													0.0841121495327103	18	0.232475284102645	1.64647619047619	3.23414965986395	0.929462365591398	0.365117975786538	1	0	ctcaccttgcgctggctgccGgcagtcaagctgcggtacag					novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	GGCAGTCA	GGCAGTCA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	B3GNTL1-92	NM_001009905	exon9	c.839_846del	p.280_282del	GCTGCCGGCAGTC	.	202	0	71	2	.	0	0	0	0	0	-	80915257	GGCAGTCA	-	80915250	7	5	28	1	0	1	0	1	0	0	0	0	1266	1103	39	0	255	0	B3GNTL1	17	80915250	Frame_Shift_Del	DEL	GGCAGTCA	TCGA-OR-A5K5-01A-11D-A29I-10	6289464	80915250	279960	177	4968										
ME2	4200	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr18	48434497	48434498	+	Frame_Shift_Ins	INS	-	-	AGAG													0.0841121495327103	18	0.232475284102645	1.64647619047619	3.23414965986395	0.929462365591398	0.365117975786538	1	0	ggacttctacctcccaaaatINSagagacacaagatattcaag					novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	ME2-90	NM_001168335	exon3	c.173_174insAGAG	p.I58fs	CCAAAATAGAGAC	.	118	25	96	0	.	0	0	0	0	0	AGAG	48434498	-	AGAG	48434497	7	5	28	1	0	1	1	0	0	0	0	0	9446	1406	49	0	179	0	ME2	18	48434497	Frame_Shift_Ins	INS	-	TCGA-OR-A5K5-01A-11D-A29I-10		48434497	29642751	178	4969										
TCF3	6929	hgsc.bcm.edu	37	chr19	1619339	1619339	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0841121495327103	18	0.232475284102645	1.64647619047619	3.23414965986395	0.929462365591398	0.365117975786538	1	0	cctgcgtgccgcccgcccagTgacatggggccggtgaaacc	14	16	0	2	rs8140	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	TCF3-721	NM_003200	exon15	c.A1302G	p.S434S	GCCCAGTGACATG	.	17	5	0	0	T|0.403;C|0.597	18	18	0	0	0	C	1619339	T	C	1619339	2	2	28	1	0	0	0	0	0	0	0	1	15731	1683	59	4		4	TCF3	19	1619339	Silent	SNP	T	TCGA-OR-A5K5-01A-11D-A29I-10		1619339	57509644	179	4970										
C19orf10	56005	hgsc.bcm.edu	37	chr19	4670313	4670313	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0841121495327103	18	0.232475284102645	1.64647619047619	3.23414965986395	0.929462365591398	0.365117975786538	1	0	cgcggcccacaagctcgcgcCgacgccgttccaccctccgc	10	22	0	0	rs2270090	byfrequency	TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	C19orf10-90	NM_019107	exon1	c.G34C	p.G12R	TCGCGCCGACGCC	.	20	14	2	0	C|0.752;G|0.248	26	13	13	0	0	G	4670313	C	G	4670313	3	3	28	1	0	0	0	0	1	0	0	0	1914	652	23	2	511	2	C19orf10	19	4670313	Missense_Mutation	SNP	C	TCGA-OR-A5K5-01A-11D-A29I-10	3050974	4670313	54458670	180	4971										
EVI5L	115704	broad.mit.edu	37	chr19	7911501	7911501	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0841121495327103	18	0.232475284102645	1.64647619047619	3.23414965986395	0.929462365591398	0.365117975786538	1	0	cccccacctgctccccaaccTctgactccgagaacctcagc	5	22	2	2	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	EVI5L-91	NM_001159944	exon1	c.T73C	p.S25P	CCAACCTCTGACT	.	104	4	87	0	.	6	6	0	0	0	C	7911501	T	C	7911501	3	2	28	1	0	0	0	0	1	0	0	0	5303	1551	54	4	75	4	EVI5L	19	7911501	Missense_Mutation	SNP	T	TCGA-OR-A5K5-01A-11D-A29I-10	3241188	7911501	51217482	181	4972										
CD320	51293	hgsc.bcm.edu	37	chr19	8373152	8373152	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0841121495327103	18	0.232475284102645	1.64647619047619	3.23414965986395	0.929462365591398	0.365117975786538	1	0	ctgttcgccacgctccaaccTgcgccatccaaccgccgctc	7	21	0	0	rs2232775	byfrequency	TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	CD320-90	NM_001165895	exon1	c.A23G	p.Q8R	CCAACCTGCGCCA	.	59	23	1	0	T|0.852;C|0.148	44	29	15	0	0	C	8373152	T	C	8373152	3	2	28	1	0	0	0	0	1	0	0	0	3010	1580	55	4	845	4	CD320	19	8373152	Missense_Mutation	SNP	T	TCGA-OR-A5K5-01A-11D-A29I-10	461651	8373152	50755831	182	4973										
KANK3	256949	hgsc.bcm.edu	37	chr19	8399628	8399628	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0841121495327103	18	0.232475284102645	1.64647619047619	3.23414965986395	0.929462365591398	0.365117975786538	1	0	accccgcgctggtgctccagActggcgcgcagcagctctag	13	16	1	1	rs710949	byfrequency	TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	KANK3-90	NM_198471	exon3	c.T1083C	p.S361S	CTCCAGACTGGCG	.	6	6	0	0	A|0.411;G|0.589	0	0	0	0	0	G	8399628	A	G	8399628	2	3	28	1	0	0	0	0	0	0	0	1	7999	272	10	4		4	KANK3	19	8399628	Silent	SNP	A	TCGA-OR-A5K5-01A-11D-A29I-10	26476	8399628	50729355	183	4974										
PRAM1	84106	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr19	8555234	8555236	+	In_Frame_Del	DEL	CAT	CAT	-													0.0841121495327103	18	0.232475284102645	1.64647619047619	3.23414965986395	0.929462365591398	0.365117975786538	1	0	ccacgtaccgcagaagtcgaCatcatcgtacacctccgtct					novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	CAT	CAT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	.	NM_032152	exon9	c.1961_1963del	p.654_655del	AGTCGACATCATC	.	185	35	126	0	.	0	0	0	0	0	-	8555236	CAT	-	8555234	7	5	28	1	0	1	0	1	0	0	0	0	12455	478	17	0	57	0	PRAM1	19	8555234	In_Frame_Del	DEL	CAT	TCGA-OR-A5K5-01A-11D-A29I-10	155606	8555234	50573749	184	4975										
NACC1	112939	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	13246265	13246265	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0841121495327103	18	0.232475284102645	1.64647619047619	3.23414965986395	0.929462365591398	0.365117975786538	1	0	cccagtctttccagcagatcCtcagcttctgctacacgggc	8	16	3	1	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	NACC1-90	NM_052876	exon2	c.C244G	p.L82V	CAGATCCTCAGCT	.	344	51	202	0	.	14	9	5	0	0	G	13246265	C	G	13246265	3	3	28	1	0	0	0	0	1	0	0	0	10163	681	24	3	246	3	NACC1	19	13246265	Missense_Mutation	SNP	C	TCGA-OR-A5K5-01A-11D-A29I-10	4691031	13246265	45882718	185	4976										
DCAF15	90379	broad.mit.edu	37	chr19	14071333	14071334	+	Frame_Shift_Ins	INS	-	-	G													0.0841121495327103	18	0.232475284102645	1.64647619047619	3.23414965986395	0.929462365591398	0.365117975786538	1	0	gacatggtcatgaagtggctINSggtgccggagagcagcggcc					novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	DCAF15-90	NM_138353	exon12	c.1688_1689insG	p.L563fs	AGTGGCTGGTGCC	.	542	7	222	0	.	0	0	0	0	0	G	14071334	-	G	14071333	7	5	28	1	0	1	1	0	0	0	0	0	4273	1580	55	0	1734	0	DCAF15	19	14071333	Frame_Shift_Ins	INS	-	TCGA-OR-A5K5-01A-11D-A29I-10	825068	14071333	45057650	186	4977										
JAK3	3718	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	17954268	17954268	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0841121495327103	18	0.232475284102645	1.64647619047619	3.23414965986395	0.929462365591398	0.365117975786538	1	0	gtagcccgaagcggtggcacTtctccagcccaaaccaattg	10	14	1	0	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	JAK3-2418	NM_000215	exon4	c.A341G	p.K114R	TGGCACTTCTCCA	.	350	57	212	0	.	0	0	0	0	0	C	17954268	T	C	17954268	3	2	28	1	0	0	0	0	1	0	0	0	7960	1609	56	4	3117	4	JAK3	19	17954268	Missense_Mutation	SNP	T	TCGA-OR-A5K5-01A-11D-A29I-10	3882935	17954268	41174715	187	4978										
RGS9BP	388531	hgsc.bcm.edu	37	chr19	33167455	33167455	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0841121495327103	18	0.232475284102645	1.64647619047619	3.23414965986395	0.929462365591398	0.365117975786538	1	0	tggaagcggacatgcgacgcGcgctggagctgggcgccgcg	19	12	0	0	rs259290	byfrequency	TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	RGS9BP-90	NM_207391	exon1	c.G286T	p.A96S	CGACGCGCGCTGG	.	7	7	0	0	G|0.540;T|0.460	0	0	0	0	0	T	33167455	G	T	33167455	3	4	28	1	0	0	0	0	1	0	0	0	13349	1087	38	2	288	2	RGS9BP	19	33167455	Missense_Mutation	SNP	G	TCGA-OR-A5K5-01A-11D-A29I-10	15213187	33167455	25961528	188	4979										
NUMBL	9253	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	41175846	41175846	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0841121495327103	18	0.232475284102645	1.64647619047619	3.23414965986395	0.929462365591398	0.365117975786538	1	0	ggtgctggcgctccagcactGgcaaaagatgaactgatctg	13	10	1	3	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	NUMBL-637	NM_004756	exon9	c.C1116T	p.A372A	AGCACTGGCAAAA	.	175	34	104	0	.	6	6	0	0	0	A	41175846	G	A	41175846	2	1	28	1	0	0	0	0	0	0	0	1	10781	1335	47	3		3	NUMBL	19	41175846	Silent	SNP	G	TCGA-OR-A5K5-01A-11D-A29I-10	8008391	41175846	17953137	189	4980										
PSG9	5678	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	43772123	43772123	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0841121495327103	18	0.232475284102645	1.64647619047619	3.23414965986395	0.929462365591398	0.365117975786538	1	0	attttaccatcaactatataCgatataatgtaatggtagag	6	5	1	1	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	PSG9-92	NM_002784	exon2	c.G243A	p.S81S	TATATACGATATA	.	167	28	161	0	.	0	0	0	0	0	T	43772123	C	T	43772123	2	4	28	1	0	0	0	0	0	0	0	1	12694	523	19	1		1	PSG9	19	43772123	Silent	SNP	C	TCGA-OR-A5K5-01A-11D-A29I-10	2596277	43772123	15356860	190	4981										
ERCC2	2068	hgsc.bcm.edu	37	chr19	45867259	45867259	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0841121495327103	18	0.232475284102645	1.64647619047619	3.23414965986395	0.929462365591398	0.365117975786538	1	0	ctcaccctgcagcacttcgtCgggcagcacggggttggcca	13	15	1	0	rs1799793	byfrequency	TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	ERCC2-848	NM_000400	exon10	c.G934A	p.D312N	CTTCGTCGGGCAG	.	23	14	0	0	C|0.804;T|0.196	15	6	9	0	0	T	45867259	C	T	45867259	3	4	28	1	0	0	0	0	1	0	0	0	5226	884	31	1	1461	1	ERCC2	19	45867259	Missense_Mutation	SNP	C	TCGA-OR-A5K5-01A-11D-A29I-10	2095136	45867259	13261724	191	4982										
PNMAL2	57469	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr19	46997223	46997223	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0841121495327103	18	0.232475284102645	1.64647619047619	3.23414965986395	0.929462365591398	0.365117975786538	1	0	gaagcctcctccgacccctcGttggaccccatgttctcccg	8	19	1	0	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	PNMAL2-1	NM_020709	exon1	c.C1500T	p.N500N	CCCCTCGTTGGAC	.	83	11	76	0	.	7	5	2	0	0	A	46997223	G	A	46997223	2	1	28	1	0	0	0	0	0	0	0	1	12187	1136	40	1		1	PNMAL2	19	46997223	Silent	SNP	G	TCGA-OR-A5K5-01A-11D-A29I-10	1129964	46997223	12131760	192	4983										
TMEM143	55260	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	48866617	48866617	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0841121495327103	18	0.232475284102645	1.64647619047619	3.23414965986395	0.929462365591398	0.365117975786538	1	0	tcgcggtactgctgggcccaGtcgcggggctccctggggtt	17	13	0	0	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	TMEM143-90	NM_018273	exon2	c.C195G	p.D65E	GGCCCAGTCGCGG	.	90	19	66	0	.	7	4	3	0	0	C	48866617	G	C	48866617	3	2	28	1	0	0	0	0	1	0	0	0	16094	1020	36	3	1212	3	TMEM143	19	48866617	Missense_Mutation	SNP	G	TCGA-OR-A5K5-01A-11D-A29I-10	1869394	48866617	10262366	193	4984										
NAPSA	9476	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	50865552	50865552	+	Silent	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.0841121495327103	18	0.232475284102645	1.64647619047619	3.23414965986395	0.929462365591398	0.365117975786538	1	0	aggatcctgcgtccaggttgGactcgatgaagagggatgct	15	8	0	2	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	NAPSA-90	NM_004851	exon2	c.C102G	p.V34V	AGGTTGGACTCGA	.	82	17	67	0	.	0	0	0	0	0	C	50865552	G	C	50865552	2	2	28	1	0	0	0	0	0	0	0	1	10194	1161	41	3		3	NAPSA	19	50865552	Silent	SNP	G	TCGA-OR-A5K5-01A-11D-A29I-10	1998935	50865552	8263431	194	4985										
ASPDH	554235	hgsc.bcm.edu	37	chr19	51015404	51015404	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0841121495327103	18	0.232475284102645	1.64647619047619	3.23414965986395	0.929462365591398	0.365117975786538	1	0	tggccgcacccaggaggctcTgccagaaggccgtgacggtg	16	13	1	2	rs12977172	byfrequency	TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	ASPDH-90	NM_001114598	exon6	c.A797G	p.Q266R	AGGCTCTGCCAGA	.	14	14	0	0	T|0.228;C|0.772	0	0	0	0	0	C	51015404	T	C	51015404	3	2	28	1	0	0	0	0	1	0	0	0	1052	1580	55	4	62	4	ASPDH	19	51015404	Missense_Mutation	SNP	T	TCGA-OR-A5K5-01A-11D-A29I-10	149852	51015404	8113579	195	4986										
LRRC4B	94030	hgsc.bcm.edu	37	chr19	51021057	51021057	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0841121495327103	18	0.232475284102645	1.64647619047619	3.23414965986395	0.929462365591398	0.365117975786538	1	0	ccacaccacccccactggccAcggcggccgcggcggccacg	12	22	0	0	rs61751957		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	LRRC4B-205	NM_001080457	exon3	c.T1913C	p.V638A	CTGGCCACGGCGG	.	25	6	1	0	A|0.777;G|0.223	0	0	0	0	0	G	51021057	A	G	51021057	3	3	28	1	0	0	0	0	1	0	0	0	9034	159	6	4	232	4	LRRC4B	19	51021057	Missense_Mutation	SNP	A	TCGA-OR-A5K5-01A-11D-A29I-10	5653	51021057	8107926	196	4987										
ZNF616	90317	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr19	52620097	52620098	+	Frame_Shift_Del	DEL	TT	TT	-													0.0841121495327103	18	0.232475284102645	1.64647619047619	3.23414965986395	0.929462365591398	0.365117975786538	1	0	gcactggcacttctttatcaTttgtttcaccatctttccat					novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	TT	TT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	ZNF616-90	NM_178523	exon4	c.319_320del	p.107_107del	TTATCATTTGTTT	.	196	37	136	0	.	0	0	0	0	0	-	52620098	TT	-	52620097	7	5	28	1	0	1	0	1	0	0	0	0	18078	1493	52	0	2029	0	ZNF616	19	52620097	Frame_Shift_Del	DEL	TT	TCGA-OR-A5K5-01A-11D-A29I-10	1599040	52620097	6508886	197	4988										
ZNF628	89887	hgsc.bcm.edu	37	chr19	55993260	55993260	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0841121495327103	18	0.232475284102645	1.64647619047619	3.23414965986395	0.929462365591398	0.365117975786538	1	0	gcgccgcccccgccccgggtAccgcctccgcggccccgccc	12	26	0	0	rs34864744		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	ZNF628-22	NM_033113	exon3	c.A700G	p.T234A	CCGGGTACCGCCT	.	11	11	0	0	A|0.270;G|0.730	0	0	0	0	0	G	55993260	A	G	55993260	3	3	28	1	0	0	0	0	1	0	0	0	18089	391	14	4	690	4	ZNF628	19	55993260	Missense_Mutation	SNP	A	TCGA-OR-A5K5-01A-11D-A29I-10	3373163	55993260	3135723	198	4989										
SLC4A11	83959	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr20	3214626	3214626	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0841121495327103	18	0.232475284102645	1.64647619047619	3.23414965986395	0.929462365591398	0.365117975786538	1	0	actgtggcggtgaccccttgGatggtatctgacagcaggtg	15	9	1	2	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	SLC4A11-91	NM_001174090	exon6	c.C675T	p.I225I	CCCTTGGATGGTA	.	100	36	92	0	.	0	0	0	0	0	A	3214626	G	A	3214626	2	1	28	1	0	0	0	0	0	0	0	1	14687	1164	41	3		3	SLC4A11	20	3214626	Silent	SNP	G	TCGA-OR-A5K5-01A-11D-A29I-10		3214626	59810894	199	4990										
PCSK2	5126	broad.mit.edu	37	chr20	17341187	17341187	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0841121495327103	18	0.232475284102645	1.64647619047619	3.23414965986395	0.929462365591398	0.365117975786538	1	0	cctgtaccagatcaatactgGgcaagctgatggcactcctg	10	12	1	2	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	PCSK2-157	NM_002594	exon4	c.G407T	p.G136V	ATACTGGGCAAGC	.	201	7	176	0	.	0	0	0	0	0	T	17341187	G	T	17341187	3	4	28	1	0	0	0	0	1	0	0	0	11630	1232	43	3	421	3	PCSK2	20	17341187	Missense_Mutation	SNP	G	TCGA-OR-A5K5-01A-11D-A29I-10	14126561	17341187	45684333	200	4991										
HNF4A	3172	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr20	43057001	43057001	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0841121495327103	18	0.232475284102645	1.64647619047619	3.23414965986395	0.929462365591398	0.365117975786538	1	0	ccagcgatgcaccccatgccCaccaccccctgcaccctcac	5	24	1	0	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	HNF4A-227	NM_178849	exon9	c.C1156A	p.H386N	CATGCCCACCACC	.	119	48	89	0	.	1	1	0	0	0	A	43057001	C	A	43057001	3	1	28	1	0	0	0	0	1	0	0	0	7274	594	21	3	1368	3	HNF4A	20	43057001	Missense_Mutation	SNP	C	TCGA-OR-A5K5-01A-11D-A29I-10	25715814	43057001	19968519	201	4992										
KCNS1	3787	bcgsc.ca	37	chr20	43727108	43727108	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0841121495327103	18	0.232475284102645	1.64647619047619	3.23414965986395	0.929462365591398	0.365117975786538	1	0	ccgggtgccggtcgaagtagAattcgcgcgccgcctcgtcg	15	14	0	1	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	KCNS1-90	NM_002251	exon4	c.T305C	p.F102S	AAGTAGAATTCGC	.	146	6	91	0	.	0	0	0	0	0	G	43727108	A	G	43727108	3	3	28	1	0	0	0	0	1	0	0	0	8109	246	9	4	1283	4	KCNS1	20	43727108	Missense_Mutation	SNP	A	TCGA-OR-A5K5-01A-11D-A29I-10	670107	43727108	19298412	202	4993										
SLMO2	51012	broad.mit.edu	37	chr20	57613555	57613555	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0841121495327103	18	0.232475284102645	1.64647619047619	3.23414965986395	0.929462365591398	0.365117975786538	1	0	aaggcagtccccactctgtgCtgagaagtctgtggctgtgc	13	11	2	1	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	SLMO2-45	NM_001256403	exon2	c.G167A	p.S56N	TCTGTGCTGAGAA	.	74	3	76	0	.	23	23	0	0	0	T	57613555	C	T	57613555	3	4	28	1	0	0	0	0	1	0	0	0	14786	797	28	3	437	3	SLMO2	20	57613555	Missense_Mutation	SNP	C	TCGA-OR-A5K5-01A-11D-A29I-10	13886447	57613555	5411965	203	4994										
DSCAM	1826	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr21	41539177	41539177	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0841121495327103	18	0.232475284102645	1.64647619047619	3.23414965986395	0.929462365591398	0.365117975786538	1	0	cctgatgctctgagatgataTaggctccaggtgaacttcct	10	10	1	4	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	DSCAM-101	NM_001271534	exon16	c.A2986G	p.I996V	ATGATATAGGCTC	.	116	30	131	1	.	0	0	0	0	0	C	41539177	T	C	41539177	3	2	28	1	0	0	0	0	1	0	0	0	4779	1406	49	4	3124	4	DSCAM	21	41539177	Missense_Mutation	SNP	T	TCGA-OR-A5K5-01A-11D-A29I-10		41539177	6590718	204	4995										
SLC25A18	83733	broad.mit.edu	37	chr22	18070006	18070006	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.0841121495327103	18	0.232475284102645	1.64647619047619	3.23414965986395	0.929462365591398	0.365117975786538	1	0	ctgccaccctcattgcctggGagctgctccgcactcagggc	11	17	2	0	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	SLC25A18-90	NM_031481	exon8	c.G514C	p.E172Q	GCCTGGGAGCTGC	.	54	4	67	0	.	0	0	0	0	0	C	18070006	G	C	18070006	3	2	28	1	0	0	0	0	1	0	0	0	14515	1175	41	3	536	3	SLC25A18	22	18070006	Missense_Mutation	SNP	G	TCGA-OR-A5K5-01A-11D-A29I-10		18070006	33234560	205	4996										
SAT1	6303	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chrX	23803871	23803873	+	In_Frame_Del	DEL	CTT	CTT	-													0.0841121495327103	18	0.232475284102645	1.64647619047619	3.23414965986395	0.929462365591398	0.365117975786538	1	0	tggaatgaaccatccatcaaCttctataaaagaagaggtgc					novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	CTT	CTT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	SAT1-554	NM_002970	exon6	c.414_416del	p.138_139del	CATCAACTTCTAT	.	220	55	254	0	.	0	0	0	0	0	-	23803873	CTT	-	23803871	7	5	28	1	0	1	0	1	0	0	0	0	13886	564	20	0	436	0	SAT1	23	23803871	In_Frame_Del	DEL	CTT	TCGA-OR-A5K5-01A-11D-A29I-10		23803871	131466689	206	4997										
PCYT1B	9468	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	24593415	24593415	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0841121495327103	18	0.232475284102645	1.64647619047619	3.23414965986395	0.929462365591398	0.365117975786538	1	0	ttcattttgtccacttggttCtggaaacggtacctcttctc	7	11	4	0	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	PCYT1B-130	NM_004845	exon7	c.G729C	p.Q243H	TTGGTTCTGGAAA	.	97	22	103	0	.	0	0	0	0	0	G	24593415	C	G	24593415	3	3	28	1	0	0	0	0	1	0	0	0	11640	912	32	3	425	3	PCYT1B	23	24593415	Missense_Mutation	SNP	C	TCGA-OR-A5K5-01A-11D-A29I-10	789544	24593415	130677145	207	4998										
MAGEB6	158809	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	chrX	26212978	26212978	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0841121495327103	18	0.232475284102645	1.64647619047619	3.23414965986395	0.929462365591398	0.365117975786538	1	0	ttactgaagatttggtgcaaGataagtacgtggtttaccgg	12	5	0	3	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	MAGEB6-133	NM_173523	exon2	c.G1015C	p.D339H	GTGCAAGATAAGT	.	456	102	367	0	.	0	0	0	0	0	C	26212978	G	C	26212978	3	2	28	1	0	0	0	0	1	0	0	0	9207	942	33	3	1017	3	MAGEB6	23	26212978	Missense_Mutation	SNP	G	TCGA-OR-A5K5-01A-11D-A29I-10	1619563	26212978	129057582	208	4999										
GPR82	27197	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	41587121	41587121	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0841121495327103	18	0.232475284102645	1.64647619047619	3.23414965986395	0.929462365591398	0.365117975786538	1	0	tctacaccaaagagataactGtcagcaattgaattatttaa	5	7	2	2	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	GPR82-110	NM_080817	exon3	c.G842T	p.C281F	ATAACTGTCAGCA	.	164	31	164	0	.	0	0	0	0	0	T	41587121	G	T	41587121	3	4	28	1	0	0	0	0	1	0	0	0	6732	1377	48	3	844	3	GPR82	23	41587121	Missense_Mutation	SNP	G	TCGA-OR-A5K5-01A-11D-A29I-10	15374143	41587121	113683439	209	5000										
DGKK	139189	broad.mit.edu	37	chrX	50213274	50213274	+	RNA	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0841121495327103	18	0.232475284102645	1.64647619047619	3.23414965986395	0.929462365591398	0.365117975786538	1	0	tcagctctggggccggctctGggaccgactctagggcaggt	16	12	4	0	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	DGKK-227	.	.	.	.	GGCTCTGGGACCG	.	15	4	19	0	.	0	0	0	0	0	A	50213274	G	A	50213274	1	1	28	0	1	0	0	0	0	0	0	0	4483	1348	47	3		3	DGKK	23	50213274	RNA	SNP	G	TCGA-OR-A5K5-01A-11D-A29I-10	8626153	50213274	105057286	210	5001										
SMC1A	8243	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	53410124	53410124	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0841121495327103	18	0.232475284102645	1.64647619047619	3.23414965986395	0.929462365591398	0.365117975786538	1	0	ctctgctgctcattcagcttCtgctgcagtgtgttcatctc	8	13	6	0	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	SMC1A-232	NM_006306	exon20	c.G3024A	p.Q1008Q	CAGCTTCTGCTGC	.	113	33	95	0	.	7	6	1	0	0	T	53410124	C	T	53410124	2	4	28	1	0	0	0	0	0	0	0	1	14816	912	32	3		3	SMC1A	23	53410124	Silent	SNP	C	TCGA-OR-A5K5-01A-11D-A29I-10	3196850	53410124	101860436	211	5002										
HUWE1	10075	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	53591626	53591626	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0841121495327103	18	0.232475284102645	1.64647619047619	3.23414965986395	0.929462365591398	0.365117975786538	1	0	ccatgatatccccatctgccAcctctgtctgagtgacatca	6	15	4	3	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	HUWE1-280	NM_031407	exon51	c.T6938G	p.V2313G	TCTGCCACCTCTG	.	128	21	132	2	.	0	0	0	0	0	C	53591626	A	C	53591626	3	2	28	1	0	0	0	0	1	0	0	0	7482	159	6	5	6322	5	HUWE1	23	53591626	Missense_Mutation	SNP	A	TCGA-OR-A5K5-01A-11D-A29I-10	181502	53591626	101678934	212	5003										
SATL1	340562	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	84362926	84362926	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0841121495327103	18	0.232475284102645	1.64647619047619	3.23414965986395	0.929462365591398	0.365117975786538	1	0	ttggggctcgttgcggtggaCctggttggcttatgcttgct	16	8	0	0	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	SATL1-175	NM_001012980	exon1	c.G1049T	p.G350V	GGTGGACCTGGTT	.	363	84	312	1	.	0	0	0	0	0	A	84362926	C	A	84362926	3	1	28	1	0	0	0	0	1	0	0	0	13890	507	18	3	869	3	SATL1	23	84362926	Missense_Mutation	SNP	C	TCGA-OR-A5K5-01A-11D-A29I-10	30771300	84362926	70907634	213	5004										
DACH2	117154	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	85950071	85950071	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0841121495327103	18	0.232475284102645	1.64647619047619	3.23414965986395	0.929462365591398	0.365117975786538	1	0	ataagatgcagtctccatttGctgcacctggaccccaacat	7	13	1	1	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	DACH2-136	NM_053281	exon5	c.G820T	p.A274S	CCATTTGCTGCAC	.	328	79	341	0	.	0	0	0	0	0	T	85950071	G	T	85950071	3	4	28	1	0	0	0	0	1	0	0	0	4227	1319	46	3	838	3	DACH2	23	85950071	Missense_Mutation	SNP	G	TCGA-OR-A5K5-01A-11D-A29I-10	1587145	85950071	69320489	214	5005										
IRS4	8471	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chrX	107979446	107979446	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0841121495327103	18	0.232475284102645	1.64647619047619	3.23414965986395	0.929462365591398	0.365117975786538	1	0	caagacgacccggtcccaatGagtgcggtcggggttcccga	14	13	0	2	novel		TCGA-OR-A5K5-01A-11D-A29I-10	TCGA-OR-A5K5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a7ec1b86-9c36-455f-a4f9-f8e82a163b67	eca69aee-715b-48c7-be08-bc78e8190f99	.	IRS4-623	NM_003604	exon1	c.C129A	p.L43L	CCCAATGAGTGCG	.	111	23	115	0	.	0	0	0	0	0	T	107979446	G	T	107979446	2	4	28	1	0	0	0	0	0	0	0	1	7863	1277	45	3		3	IRS4	23	107979446	Silent	SNP	G	TCGA-OR-A5K5-01A-11D-A29I-10	22029375	107979446	47291114	215	5006										
OPRD1	4985	hgsc.bcm.edu	37	chr1	29138975	29138975	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.03125	3	1	1.04176829268293	4.63008130081301	0	0.142857142857143	0.738095238095239	0	ggacgcctaccctagcgcctGccccagcgctggcgccaatg	12	18	0	0	rs1042114	byfrequency	TCGA-OR-A5K8-01A-11D-A29I-10	TCGA-OR-A5K8-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	104c32cd-f89e-4198-9108-033ace38f66b	6def7b38-71db-4a33-a6ca-bd7dda66512e	.	OPRD1-69	NM_000911	exon1	c.G80T	p.C27F	GCGCCTGCCCCAG	.	11	10	0	0	G|0.061;T|0.939	0	0	0	0	0	T	29138975	G	T	29138975	3	4	29	1	0	0	0	0	1	0	0	0	10913	1319	46	3	82	3	OPRD1	1	29138975	Missense_Mutation	SNP	G	TCGA-OR-A5K8-01A-11D-A29I-10		29138975	220111646	1	5007										
CYP4A22	284541	bcgsc.ca	37	chr1	47609489	47609489	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.03125	3	1	1.04176829268293	4.63008130081301	0	0.142857142857143	0.738095238095239	0	tgaacagcctggttttttgcTgtatgaggaatgcctttcat	10	7	1	2	rs10789501	byfrequency	TCGA-OR-A5K8-01A-11D-A29I-10	TCGA-OR-A5K8-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	104c32cd-f89e-4198-9108-033ace38f66b	6def7b38-71db-4a33-a6ca-bd7dda66512e	.	CYP4A22-139	NM_001010969	exon6	c.T691C	p.C231R	TTTTGCTGTATGA	.	192	7	194	2	T|0.527;C|0.473	0	0	0	0	0	C	47609489	T	C	47609489	3	2	29	1	0	0	0	0	1	0	0	0	4190	1580	55	4	713	4	CYP4A22	1	47609489	Missense_Mutation	SNP	T	TCGA-OR-A5K8-01A-11D-A29I-10	18470514	47609489	201641132	2	5008										
IGSF3	3321	broad.mit.edu	37	chr1	117142736	117142736	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.03125	3	1	1.04176829268293	4.63008130081301	0	0.142857142857143	0.738095238095239	0	tgctggactcagccttctcgAtggcagttcgggttcggaag	14	10	2	0	rs75067537	byfrequency	TCGA-OR-A5K8-01A-11D-A29I-10	TCGA-OR-A5K8-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	104c32cd-f89e-4198-9108-033ace38f66b	6def7b38-71db-4a33-a6ca-bd7dda66512e	.	IGSF3-92	NM_001542	exon8	c.T1916C	p.I639T	TTCTCGATGGCAG	.	85	11	96	2	A|0.500;G|0.500	1	1	0	0	0	G	117142736	A	G	117142736	3	3	29	1	0	0	0	0	1	0	0	0	7622	333	12	4	1748	4	IGSF3	1	117142736	Missense_Mutation	SNP	A	TCGA-OR-A5K8-01A-11D-A29I-10	69533247	117142736	132107885	3	5009										
LCE1F	353137	hgsc.bcm.edu	37	chr1	152749003	152749008	+	In_Frame_Del	DEL	TGGCTC	TGGCTC	-													0.03125	3	1	1.04176829268293	4.63008130081301	0	0.142857142857143	0.738095238095239	0	gtcagctccggaggctgctgTggctccagctctgggggctg					novel		TCGA-OR-A5K8-01A-11D-A29I-10	TCGA-OR-A5K8-10A-01D-A29L-10	TGGCTC	TGGCTC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	104c32cd-f89e-4198-9108-033ace38f66b	6def7b38-71db-4a33-a6ca-bd7dda66512e	.	LCE1F-68	NM_178354	exon1	c.156_161del	p.52_54del	CTGCTGTGGCTCC	.	66	12	58	0	.	0	0	0	0	0	-	152749008	TGGCTC	-	152749003	7	5	29	1	0	1	0	1	0	0	0	0	8686	1702	59	0	158	0	LCE1F	1	152749003	In_Frame_Del	DEL	TGGCTC	TCGA-OR-A5K8-01A-11D-A29I-10	35606267	152749003	96501618	4	5010										
HHIPL2	79802	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	222721210	222721210	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.03125	3	1	1.04176829268293	4.63008130081301	0	0.142857142857143	0.738095238095239	0	gactcatagtcagagcaaaaCtcaaggtgcagagggggctg	14	8	3	2	novel		TCGA-OR-A5K8-01A-11D-A29I-10	TCGA-OR-A5K8-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	104c32cd-f89e-4198-9108-033ace38f66b	6def7b38-71db-4a33-a6ca-bd7dda66512e	.	HHIPL2-69	NM_024746	exon1	c.G177T	p.E59D	GCAAAACTCAAGG	.	53	43	72	0	.	0	0	0	0	0	A	222721210	C	A	222721210	3	1	29	1	0	0	0	0	1	0	0	0	7115	564	20	3	2033	3	HHIPL2	1	222721210	Missense_Mutation	SNP	C	TCGA-OR-A5K8-01A-11D-A29I-10	69972207	222721210	26529411	5	5011										
OR14I1	401994	bcgsc.ca	37	chr1	248845356	248845356	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.03125	3	1	1.04176829268293	4.63008130081301	0	0.142857142857143	0.738095238095239	0	gatggagcttctgcgagtcaGggagttacggatggatttag	16	5	2	0	rs41311583	byfrequency	TCGA-OR-A5K8-01A-11D-A29I-10	TCGA-OR-A5K8-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	104c32cd-f89e-4198-9108-033ace38f66b	6def7b38-71db-4a33-a6ca-bd7dda66512e	.	OR14I1-46	NM_001004734	exon1	c.C250A	p.L84M	GAGTCAGGGAGTT	.	349	12	382	3	G|0.876;T|0.124	0	0	0	0	0	T	248845356	G	T	248845356	3	4	29	1	0	0	0	0	1	0	0	0	10976	991	35	3	689	3	OR14I1	1	248845356	Missense_Mutation	SNP	G	TCGA-OR-A5K8-01A-11D-A29I-10	26124146	248845356	405265	6	5012										
CMPK2	129607	hgsc.bcm.edu	37	chr2	7005369	7005369	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.03125	3	1	1.04176829268293	4.63008130081301	0	0.142857142857143	0.738095238095239	0	tgcgggcgtggtgcctcctgAcaggcgcccagcagctcgag	16	14	0	1	rs11678810		TCGA-OR-A5K8-01A-11D-A29I-10	TCGA-OR-A5K8-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	104c32cd-f89e-4198-9108-033ace38f66b	6def7b38-71db-4a33-a6ca-bd7dda66512e	.	CMPK2-68	NM_001256478	exon1	c.T459C	p.C153C	CTCCTGACAGGCG	.	6	6	0	0	A|0.003;G|0.997	0	0	0	0	0	G	7005369	A	G	7005369	2	3	29	1	0	0	0	0	0	0	0	1	3587	273	10	4		4	CMPK2	2	7005369	Silent	SNP	A	TCGA-OR-A5K8-01A-11D-A29I-10		7005369	236194004	7	5013										
TTC7A	57217	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr2	47184029	47184029	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.03125	3	1	1.04176829268293	4.63008130081301	0	0.142857142857143	0.738095238095239	0	tgggcaaactgcattacgtgGagggctcataccgagatgcc	13	10	1	1	novel		TCGA-OR-A5K8-01A-11D-A29I-10	TCGA-OR-A5K8-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	104c32cd-f89e-4198-9108-033ace38f66b	6def7b38-71db-4a33-a6ca-bd7dda66512e	.	TTC7A-136	NM_020458	exon3	c.G400A	p.E134K	TACGTGGAGGGCT	.	144	8	219	0	.	3	2	1	0	0	A	47184029	G	A	47184029	3	1	29	1	0	0	0	0	1	0	0	0	16750	1175	41	3	410	3	TTC7A	2	47184029	Missense_Mutation	SNP	G	TCGA-OR-A5K8-01A-11D-A29I-10	40178660	47184029	196015344	8	5014										
RNF149	284996	hgsc.bcm.edu	37	chr2	101925026	101925026	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.03125	3	1	1.04176829268293	4.63008130081301	0	0.142857142857143	0.738095238095239	0	cacgccgcgagccccgacgcTggcttcgcgccgccgccacg	13	21	0	0	rs11123868	byfrequency	TCGA-OR-A5K8-01A-11D-A29I-10	TCGA-OR-A5K8-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	104c32cd-f89e-4198-9108-033ace38f66b	6def7b38-71db-4a33-a6ca-bd7dda66512e	.	RNF149-290	NM_173647	exon1	c.A25G	p.S9G	CGACGCTGGCTTC	.	8	8	0	0	T|0.543;C|0.457	0	0	0	0	0	C	101925026	T	C	101925026	3	2	29	1	0	0	0	0	1	0	0	0	13485	1580	55	4	1205	4	RNF149	2	101925026	Missense_Mutation	SNP	T	TCGA-OR-A5K8-01A-11D-A29I-10	54740997	101925026	141274347	9	5015										
SPAG16	79582	bcgsc.ca	37	chr2	214794743	214794743	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.03125	3	1	1.04176829268293	4.63008130081301	0	0.142857142857143	0.738095238095239	0	taaattatgggatctatgtaAaggcgattgcattttgacct	9	5	1	1	rs12623569	byfrequency	TCGA-OR-A5K8-01A-11D-A29I-10	TCGA-OR-A5K8-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	104c32cd-f89e-4198-9108-033ace38f66b	6def7b38-71db-4a33-a6ca-bd7dda66512e	.	SPAG16-188	NM_024532	exon12	c.A1274C	p.K425T	TATGTAAAGGCGA	.	133	6	148	1	A|0.722;C|0.278	0	0	0	0	0	C	214794743	A	C	214794743	3	2	29	1	0	0	0	0	1	0	0	0	15015	14	1	5	1336	5	SPAG16	2	214794743	Missense_Mutation	SNP	A	TCGA-OR-A5K8-01A-11D-A29I-10	112869717	214794743	28404630	10	5016										
LRRN1	57633	broad.mit.edu;bcgsc.ca	37	chr3	3887575	3887575	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.03125	3	1	1.04176829268293	4.63008130081301	0	0.142857142857143	0.738095238095239	0	gaaggaagttttaatccaggAttcgagtgaacagtgcctcc	11	8	0	1	novel		TCGA-OR-A5K8-01A-11D-A29I-10	TCGA-OR-A5K8-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	104c32cd-f89e-4198-9108-033ace38f66b	6def7b38-71db-4a33-a6ca-bd7dda66512e	.	LRRN1-90	NM_020873	exon2	c.A1250T	p.D417V	TCCAGGATTCGAG	.	104	86	125	2	.	0	0	0	0	0	T	3887575	A	T	3887575	3	4	29	1	0	0	0	0	1	0	0	0	9061	333	12	5	1252	5	LRRN1	3	3887575	Missense_Mutation	SNP	A	TCGA-OR-A5K8-01A-11D-A29I-10		3887575	194134855	11	5017										
UBP1	7342	bcgsc.ca	37	chr3	33458266	33458266	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.03125	3	1	1.04176829268293	4.63008130081301	0	0.142857142857143	0.738095238095239	0	ttacctttactaattttccaTtgatctcaggcatatcaccc	3	12	2	1	rs3736563	byfrequency	TCGA-OR-A5K8-01A-11D-A29I-10	TCGA-OR-A5K8-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	104c32cd-f89e-4198-9108-033ace38f66b	6def7b38-71db-4a33-a6ca-bd7dda66512e	.	UBP1-537	NM_001128160	exon3	c.A326G	p.N109S	TTTCCATTGATCT	.	232	7	337	5	T|0.585;C|0.415	1	1	0	0	0	C	33458266	T	C	33458266	3	2	29	1	0	0	0	0	1	0	0	0	16933	1493	52	4	1352	4	UBP1	3	33458266	Missense_Mutation	SNP	T	TCGA-OR-A5K8-01A-11D-A29I-10	29570691	33458266	164564164	12	5018										
CHDH	55349	hgsc.bcm.edu	37	chr3	53857917	53857917	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.03125	3	1	1.04176829268293	4.63008130081301	0	0.142857142857143	0.738095238095239	0	ccaccaccacatagctgtacTcgtcccggctctcagagcct	7	18	1	1	rs9001	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-OR-A5K8-01A-11D-A29I-10	TCGA-OR-A5K8-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	104c32cd-f89e-4198-9108-033ace38f66b	6def7b38-71db-4a33-a6ca-bd7dda66512e	.	CHDH-91	NM_018397	exon3	c.A119C	p.E40A	CTGTACTCGTCCC	.	8	7	1	0	T|0.749;G|0.251	0	0	0	0	0	G	53857917	T	G	53857917	3	3	29	1	0	0	0	0	1	0	0	0	3339	1551	54	5	1693	5	CHDH	3	53857917	Missense_Mutation	SNP	T	TCGA-OR-A5K8-01A-11D-A29I-10	20399651	53857917	144164513	13	5019										
CD200	4345	bcgsc.ca	37	chr3	112068596	112068596	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.03125	3	1	1.04176829268293	4.63008130081301	0	0.142857142857143	0.738095238095239	0	ccgctattgctaagcattgtTtccctggtaattcttctcgt	7	11	2	0	novel		TCGA-OR-A5K8-01A-11D-A29I-10	TCGA-OR-A5K8-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	104c32cd-f89e-4198-9108-033ace38f66b	6def7b38-71db-4a33-a6ca-bd7dda66512e	.	CD200-90	NM_001004196	exon6	c.T807C	p.V269V	CATTGTTTCCCTG	.	58	4	67	0	.	2	2	0	0	0	C	112068596	T	C	112068596	2	2	29	1	0	0	0	0	0	0	0	1	2986	1828	64	4		4	CD200	3	112068596	Silent	SNP	T	TCGA-OR-A5K8-01A-11D-A29I-10	58210679	112068596	85953834	14	5020										
GPR156	165829	hgsc.bcm.edu;bcgsc.ca	37	chr3	119962580	119962580	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.03125	3	1	1.04176829268293	4.63008130081301	0	0.142857142857143	0.738095238095239	0	aaacaatacccaagaggacaGgagataatgaagagatggtc	11	6	0	4	novel		TCGA-OR-A5K8-01A-11D-A29I-10	TCGA-OR-A5K8-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	104c32cd-f89e-4198-9108-033ace38f66b	6def7b38-71db-4a33-a6ca-bd7dda66512e	.	GPR156-92	NM_001168271	exon2	c.C140A	p.P47H	AGGACAGGAGATA	.	47	4	79	0	.	0	0	0	0	0	T	119962580	G	T	119962580	3	4	29	1	0	0	0	0	1	0	0	0	6681	1000	35	3	2336	3	GPR156	3	119962580	Missense_Mutation	SNP	G	TCGA-OR-A5K8-01A-11D-A29I-10	7893984	119962580	78059850	15	5021										
MUC4	4585	ucsc.edu;bcgsc.ca	37	chr3	195517745	195517745	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.03125	3	1	1.04176829268293	4.63008130081301	0	0.142857142857143	0.738095238095239	0	tgaaggagatgtcttctgagAaacagtccctgtcacattgt	10	8	3	3	novel		TCGA-OR-A5K8-01A-11D-A29I-10	TCGA-OR-A5K8-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	104c32cd-f89e-4198-9108-033ace38f66b	6def7b38-71db-4a33-a6ca-bd7dda66512e	.	MUC4-90	NM_018406	exon2	c.T706G	p.S236A	TCTGAGAAACAGT	.	286	246	307	4	.	0	0	0	0	0	C	195517745	A	C	195517745	3	2	29	1	0	0	0	0	1	0	0	0	10006	246	9	5		5	MUC4	3	195517745	Missense_Mutation	SNP	A	TCGA-OR-A5K8-01A-11D-A29I-10	75555165	195517745	2504685	16	5022										
MFSD7	84179	hgsc.bcm.edu	37	chr4	675949	675949	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.03125	3	1	1.04176829268293	4.63008130081301	0	0.142857142857143	0.738095238095239	0	cctctagcgaggcccccctcGccgtgcactccggagtcgcc	11	20	1	0	rs183765686		TCGA-OR-A5K8-01A-11D-A29I-10	TCGA-OR-A5K8-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	104c32cd-f89e-4198-9108-033ace38f66b	6def7b38-71db-4a33-a6ca-bd7dda66512e	.	MFSD7-90	NM_032219	exon10	c.C1478T	p.A493V	CCCCTCGCCGTGC	.	12	7	1	0	G|0.991;A|0.009	0	0	0	0	0	A	675949	G	A	675949	3	1	29	1	0	0	0	0	1	0	0	0	9565	1087	38	1	205	1	MFSD7	4	675949	Missense_Mutation	SNP	G	TCGA-OR-A5K8-01A-11D-A29I-10		675949	190478327	17	5023										
CRIPAK	285464	hgsc.bcm.edu	37	chr4	1388726	1388726	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.03125	3	1	1.04176829268293	4.63008130081301	0	0.142857142857143	0.738095238095239	0	cgcctgctcacacgtgcccaTgcggagtgcccgcctgctca	11	18	2	0	rs199689156	byfrequency	TCGA-OR-A5K8-01A-11D-A29I-10	TCGA-OR-A5K8-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	104c32cd-f89e-4198-9108-033ace38f66b	6def7b38-71db-4a33-a6ca-bd7dda66512e	.	CRIPAK-90	NM_175918	exon1	c.T427C	p.C143R	TGCCCATGCGGAG	.	163	10	5	0	T|0.980;C|0.020	5	5	0	0	0	C	1388726	T	C	1388726	3	2	29	1	0	0	0	0	1	0	0	0	3883	1464	51	4	429	4	CRIPAK	4	1388726	Missense_Mutation	SNP	T	TCGA-OR-A5K8-01A-11D-A29I-10	712777	1388726	189765550	18	5024										
FAM53A	152877	hgsc.bcm.edu	37	chr4	1656850	1656850	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.03125	3	1	1.04176829268293	4.63008130081301	0	0.142857142857143	0.738095238095239	0	ggcgcccgcccagcgcaggcGtggacgtggggctgctgctg	19	14	0	0	rs62287701	byfrequency	TCGA-OR-A5K8-01A-11D-A29I-10	TCGA-OR-A5K8-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	104c32cd-f89e-4198-9108-033ace38f66b	6def7b38-71db-4a33-a6ca-bd7dda66512e	.	FAM53A-90	NM_001013622	exon4	c.C737T	p.T246M	GCAGGCGTGGACG	.	47	18	1	0	G|0.991;A|0.009	1	0	1	0	0	A	1656850	G	A	1656850	3	1	29	1	0	0	0	0	1	0	0	0	5598	1145	40	1	467	1	FAM53A	4	1656850	Missense_Mutation	SNP	G	TCGA-OR-A5K8-01A-11D-A29I-10	268124	1656850	189497426	19	5025										
OTOP1	133060	hgsc.bcm.edu	37	chr4	4228456	4228456	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.03125	3	1	1.04176829268293	4.63008130081301	0	0.142857142857143	0.738095238095239	0	gctggcgcgcacaccgccccGccggggggccggggattccg	18	17	0	0	rs73191872	bycluster;by1000genomes	TCGA-OR-A5K8-01A-11D-A29I-10	TCGA-OR-A5K8-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	104c32cd-f89e-4198-9108-033ace38f66b	6def7b38-71db-4a33-a6ca-bd7dda66512e	.	OTOP1-92	NM_177998	exon1	c.C136A	p.R46R	CGCCCCGCCGGGG	.	80	15	7	0	.	0	0	0	0	0	T	4228456	G	T	4228456	2	4	29	1	0	0	0	0	0	0	0	1	11334	1086	38	2		2	OTOP1	4	4228456	Silent	SNP	G	TCGA-OR-A5K8-01A-11D-A29I-10	2571606	4228456	186925820	20	5026			1	26		2	2	17	N	T_G	4.961642e-05
OTOP1	133060	hgsc.bcm.edu	37	chr4	4228472	4228472	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.03125	3	1	1.04176829268293	4.63008130081301	0	0.142857142857143	0.738095238095239	0	ccccgccggggggccggggaTtccggggacctcggggccga	20	15	0	0	rs76810534		TCGA-OR-A5K8-01A-11D-A29I-10	TCGA-OR-A5K8-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	104c32cd-f89e-4198-9108-033ace38f66b	6def7b38-71db-4a33-a6ca-bd7dda66512e	.	OTOP1-92	NM_177998	exon1	c.A120G	p.E40E	CGGGGATTCCGGG	.	57	12	5	0	.	0	0	0	0	0	C	4228472	T	C	4228472	2	2	29	1	0	0	0	0	0	0	0	1	11334	1490	52	4		4	OTOP1	4	4228472	Silent	SNP	T	TCGA-OR-A5K8-01A-11D-A29I-10	16	4228472	186925804	21	5027			1	26		2	2	17	N	T_G	4.961642e-05
KIAA0922	23240	bcgsc.ca	37	chr4	154513627	154513627	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.03125	3	1	1.04176829268293	4.63008130081301	0	0.142857142857143	0.738095238095239	0	ttttctttcctcacacctagAtcaagtactttgtggtgcag	7	10	3	1	rs7669418	byfrequency	TCGA-OR-A5K8-01A-11D-A29I-10	TCGA-OR-A5K8-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	104c32cd-f89e-4198-9108-033ace38f66b	6def7b38-71db-4a33-a6ca-bd7dda66512e	.	KIAA0922-92	NM_001131007	exon18	c.A1813G	p.I605V	ACCTAGATCAAGT	.	75	7	62	0	A|0.743;G|0.257	0	0	0	0	0	G	154513627	A	G	154513627	3	3	29	1	0	0	0	0	1	0	0	0	8222	347	12	4	1883	4	KIAA0922	4	154513627	Missense_Mutation	SNP	A	TCGA-OR-A5K8-01A-11D-A29I-10	150285155	154513627	36640649	22	5028										
NAF1	92345	hgsc.bcm.edu	37	chr4	164050186	164050186	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.03125	3	1	1.04176829268293	4.63008130081301	0	0.142857142857143	0.738095238095239	0	catgtttggtgtagcccaacCcatgtttacaggtgggggtg	14	8	0	0	rs200516616		TCGA-OR-A5K8-01A-11D-A29I-10	TCGA-OR-A5K8-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	104c32cd-f89e-4198-9108-033ace38f66b	6def7b38-71db-4a33-a6ca-bd7dda66512e	.	NAF1-70	NM_138386	exon8	c.G1348A	p.G450S	CCCAACCCATGTT	.	6	4	7	0	.	0	0	0	0	0	T	164050186	C	T	164050186	3	4	29	1	0	0	0	0	1	0	0	0	10168	623	22	3	281	3	NAF1	4	164050186	Missense_Mutation	SNP	C	TCGA-OR-A5K8-01A-11D-A29I-10	9536559	164050186	27104090	23	5029										
IRX4	50805	hgsc.bcm.edu	37	chr5	1882129	1882129	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.03125	3	1	1.04176829268293	4.63008130081301	0	0.142857142857143	0.738095238095239	0	gagtccgccagcgtgcggccTccggactcgcagcacgtgct	14	16	0	0	rs2232374	byfrequency	TCGA-OR-A5K8-01A-11D-A29I-10	TCGA-OR-A5K8-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	104c32cd-f89e-4198-9108-033ace38f66b	6def7b38-71db-4a33-a6ca-bd7dda66512e	.	IRX4-226	NM_016358	exon2	c.A90C	p.G30G	GCGGCCTCCGGAC	.	13	8	4	0	T|0.735;G|0.265	0	0	0	0	0	G	1882129	T	G	1882129	2	3	29	1	0	0	0	0	0	0	0	1	7867	1538	54	5		5	IRX4	5	1882129	Silent	SNP	T	TCGA-OR-A5K8-01A-11D-A29I-10		1882129	179033131	24	5030										
SNX18	112574	hgsc.bcm.edu	37	chr5	53814052	53814052	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.03125	3	1	1.04176829268293	4.63008130081301	0	0.142857142857143	0.738095238095239	0	gggggcttcgagcccctgccTgtcgcgccccccgcctcctt	12	20	0	0	rs2548615		TCGA-OR-A5K8-01A-11D-A29I-10	TCGA-OR-A5K8-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	104c32cd-f89e-4198-9108-033ace38f66b	6def7b38-71db-4a33-a6ca-bd7dda66512e	.	SNX18-226	NM_052870	exon1	c.T270C	p.P90P	CCTGCCTGTCGCG	.	4	4	0	0	G|0.979;C|0.003	0	0	0	0	0	C	53814052	T	C	53814052	2	2	29	1	0	0	0	0	0	0	0	1	14924	1567	55	4		4	SNX18	5	53814052	Silent	SNP	T	TCGA-OR-A5K8-01A-11D-A29I-10	51931923	53814052	127101208	25	5031										
CMYA5	202333	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	79029401	79029401	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.03125	3	1	1.04176829268293	4.63008130081301	0	0.142857142857143	0.738095238095239	0	tatcttctacagctcagggaGacttcccatcagaaaaacaa	6	11	4	2	novel		TCGA-OR-A5K8-01A-11D-A29I-10	TCGA-OR-A5K8-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	104c32cd-f89e-4198-9108-033ace38f66b	6def7b38-71db-4a33-a6ca-bd7dda66512e	.	CMYA5-77	NM_153610	exon2	c.G4813C	p.D1605H	CAGGGAGACTTCC	.	135	42	51	0	.	0	0	0	0	0	C	79029401	G	C	79029401	3	2	29	1	0	0	0	0	1	0	0	0	3596	942	33	3	4819	3	CMYA5	5	79029401	Missense_Mutation	SNP	G	TCGA-OR-A5K8-01A-11D-A29I-10	25215349	79029401	101885859	26	5032										
RGMB	285704	hgsc.bcm.edu	37	chr5	98109838	98109838	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.03125	3	1	1.04176829268293	4.63008130081301	0	0.142857142857143	0.738095238095239	0	ccgaggttgagcagcgccgcAgccccgggctctgccccccg	14	19	1	1	rs2662263		TCGA-OR-A5K8-01A-11D-A29I-10	TCGA-OR-A5K8-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	104c32cd-f89e-4198-9108-033ace38f66b	6def7b38-71db-4a33-a6ca-bd7dda66512e	.	.	NM_001012761	exon3	c.A187C	p.S63R	CGCCGCAGCCCCG	.	6	6	0	0	T|0.046;G|0.950	0	0	0	0	0	C	98109838	A	C	98109838	3	2	29	1	0	0	0	0	1	0	0	0	13316	188	7	5	193	5	RGMB	5	98109838	Missense_Mutation	SNP	A	TCGA-OR-A5K8-01A-11D-A29I-10	19080437	98109838	82805422	27	5033										
ATP10B	23120	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	160049541	160049541	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.03125	3	1	1.04176829268293	4.63008130081301	0	0.142857142857143	0.738095238095239	0	caaggtctccaaccacagggCagcatctcgaaccttggtca	9	14	3	0	novel		TCGA-OR-A5K8-01A-11D-A29I-10	TCGA-OR-A5K8-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	104c32cd-f89e-4198-9108-033ace38f66b	6def7b38-71db-4a33-a6ca-bd7dda66512e	.	ATP10B-72	NM_025153	exon14	c.G1672T	p.A558S	ACAGGGCAGCATC	.	169	54	100	1	.	0	0	0	0	0	A	160049541	C	A	160049541	3	1	29	1	0	0	0	0	1	0	0	0	1118	710	25	3	2765	3	ATP10B	5	160049541	Missense_Mutation	SNP	C	TCGA-OR-A5K8-01A-11D-A29I-10	61939703	160049541	20865719	28	5034										
DAXX	1616	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	33288624	33288624	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.03125	3	1	1.04176829268293	4.63008130081301	0	0.142857142857143	0.738095238095239	0	ggcatcctgagccatgagctGgagctgctgtcgggggaggc	18	10	0	2	novel		TCGA-OR-A5K8-01A-11D-A29I-10	TCGA-OR-A5K8-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	104c32cd-f89e-4198-9108-033ace38f66b	6def7b38-71db-4a33-a6ca-bd7dda66512e	.	DAXX-731	NM_001141970	exon3	c.C964T	p.Q322X	TGAGCTGGAGCTG	.	78	63	121	0	.	0	0	0	0	0	A	33288624	G	A	33288624	4	1	29	1	0	0	0	0	0	1	0	0	4249	1357	47	3	1318	3	DAXX	6	33288624	Nonsense_Mutation	SNP	G	TCGA-OR-A5K8-01A-11D-A29I-10		33288624	137826443	29	5035										
SYNGAP1	8831	bcgsc.ca	37	chr6	33408542	33408542	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.03125	3	1	1.04176829268293	4.63008130081301	0	0.142857142857143	0.738095238095239	0	ctgaaggaggtgtttgcttcGtggcggctgcgctgcgcaga	17	9	0	2	rs411136	byfrequency	TCGA-OR-A5K8-01A-11D-A29I-10	TCGA-OR-A5K8-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	104c32cd-f89e-4198-9108-033ace38f66b	6def7b38-71db-4a33-a6ca-bd7dda66512e	.	SYNGAP1-48	NM_006772	exon11	c.G1713A	p.S571S	TGCTTCGTGGCGG	.	46	5	56	0	G|0.608;A|0.392	1	1	0	0	0	A	33408542	G	A	33408542	2	1	29	1	0	0	0	0	0	0	0	1	15484	1132	40	1		1	SYNGAP1	6	33408542	Silent	SNP	G	TCGA-OR-A5K8-01A-11D-A29I-10	119918	33408542	137706525	30	5036										
CDK19	23097	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	110953362	110953362	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.03125	3	1	1.04176829268293	4.63008130081301	0	0.142857142857143	0.738095238095239	0	taatctggcaaaacccatgtCagctaaaaaaataaaataaa	4	7	2	0	novel		TCGA-OR-A5K8-01A-11D-A29I-10	TCGA-OR-A5K8-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	104c32cd-f89e-4198-9108-033ace38f66b	6def7b38-71db-4a33-a6ca-bd7dda66512e	.	CDK19-548	NM_015076	exon6	c.G517C	p.D173H	CCATGTCAGCTAA	.	14	14	28	0	.	0	0	0	0	0	G	110953362	C	G	110953362	3	3	29	1	0	0	0	0	1	0	0	0	3141	826	29	3	1023	3	CDK19	6	110953362	Missense_Mutation	SNP	C	TCGA-OR-A5K8-01A-11D-A29I-10	77544820	110953362	60161705	31	5037										
LAMA4	3910	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	112455803	112455803	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.03125	3	1	1.04176829268293	4.63008130081301	0	0.142857142857143	0.738095238095239	0	ttcttatcattgtggtaaatGattgagatctgggagagata	11	3	3	3	novel		TCGA-OR-A5K8-01A-11D-A29I-10	TCGA-OR-A5K8-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	104c32cd-f89e-4198-9108-033ace38f66b	6def7b38-71db-4a33-a6ca-bd7dda66512e	.	LAMA4-140	NM_001105206	exon26	c.C3423A	p.I1141I	GTAAATGATTGAG	.	26	20	27	0	.	0	0	0	0	0	T	112455803	G	T	112455803	2	4	29	1	0	0	0	0	0	0	0	1	8630	1280	45	3		3	LAMA4	6	112455803	Silent	SNP	G	TCGA-OR-A5K8-01A-11D-A29I-10	1502441	112455803	58659264	32	5038										
FAM26D	221301	broad.mit.edu	37	chr6	116875427	116875427	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.03125	3	1	1.04176829268293	4.63008130081301	0	0.142857142857143	0.738095238095239	0	agcaaacgagaagagatcctGgctgggtttccatgttgcag	13	8	0	2	rs7762318	byfrequency	TCGA-OR-A5K8-01A-11D-A29I-10	TCGA-OR-A5K8-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	104c32cd-f89e-4198-9108-033ace38f66b	6def7b38-71db-4a33-a6ca-bd7dda66512e	.	FAM26D-90	NM_001256887	exon3	c.G42A	p.L14L	GATCCTGGCTGGG	.	63	4	72	2	G|0.360;A|0.640	0	0	0	0	0	A	116875427	G	A	116875427	2	1	29	1	0	0	0	0	0	0	0	1	5568	1363	47	3		3	FAM26D	6	116875427	Silent	SNP	G	TCGA-OR-A5K8-01A-11D-A29I-10	4419624	116875427	54239640	33	5039										
UTRN	7402	hgsc.bcm.edu;ucsc.edu	37	chr6	145093104	145093104	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.03125	3	1	1.04176829268293	4.63008130081301	0	0.142857142857143	0.738095238095239	0	ccgaactctttcaatcccttGgtaagtgttattaatagtaa	6	8	2	0	novel		TCGA-OR-A5K8-01A-11D-A29I-10	TCGA-OR-A5K8-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	104c32cd-f89e-4198-9108-033ace38f66b	6def7b38-71db-4a33-a6ca-bd7dda66512e	.	UTRN-95	NM_007124	exon58	c.G8557T	p.A2853S	TCCCTTGGTAAGT	.	37	4	13	0	.	0	0	0	0	0	T	145093104	G	T	145093104	3	4	29	1	0	0	0	0	1	0	0	0	17141	1362	47	3	8787	3	UTRN	6	145093104	Missense_Mutation	SNP	G	TCGA-OR-A5K8-01A-11D-A29I-10	28217677	145093104	26021963	34	5040										
LRP11	84918	hgsc.bcm.edu	37	chr6	150184882	150184882	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.03125	3	1	1.04176829268293	4.63008130081301	0	0.142857142857143	0.738095238095239	0	cgctgtagccgccgctgcccGggcccgggcagtcctcctgg	15	18	0	0	rs9322225		TCGA-OR-A5K8-01A-11D-A29I-10	TCGA-OR-A5K8-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	104c32cd-f89e-4198-9108-033ace38f66b	6def7b38-71db-4a33-a6ca-bd7dda66512e	.	LRP11-90	NM_032832	exon1	c.C275G	p.P92R	CTGCCCGGGCCCG	.	9	9	0	0	G|0.492;C|0.508	1	0	1	0	0	C	150184882	G	C	150184882	3	2	29	1	0	0	0	0	1	0	0	0	8980	1116	39	2	1255	2	LRP11	6	150184882	Missense_Mutation	SNP	G	TCGA-OR-A5K8-01A-11D-A29I-10	5091778	150184882	20930185	35	5041										
GARS	2617	hgsc.bcm.edu	37	chr7	30634661	30634661	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.03125	3	1	1.04176829268293	4.63008130081301	0	0.142857142857143	0.738095238095239	0	ccctcagcgcggcctcctgcCccccgatctccttgcccgcc	8	24	2	0	rs1049402	byfrequency	TCGA-OR-A5K8-01A-11D-A29I-10	TCGA-OR-A5K8-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	104c32cd-f89e-4198-9108-033ace38f66b	6def7b38-71db-4a33-a6ca-bd7dda66512e	.	GARS-91	NM_002047	exon1	c.C124G	p.P42A	TCCTGCCCCCCGA	.	21	8	0	0	C|0.329;G|0.671	2	0	2	0	0	G	30634661	C	G	30634661	3	3	29	1	0	0	0	0	1	0	0	0	6262	623	22	3	126	3	GARS	7	30634661	Missense_Mutation	SNP	C	TCGA-OR-A5K8-01A-11D-A29I-10		30634661	128504002	36	5042										
GTF2I	2969	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	74119504	74119504	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.03125	3	1	1.04176829268293	4.63008130081301	0	0.142857142857143	0.738095238095239	0	ttttgtatgtaggtggtcgtGtgatggtaacagatgctgac	14	4	0	3	novel		TCGA-OR-A5K8-01A-11D-A29I-10	TCGA-OR-A5K8-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	104c32cd-f89e-4198-9108-033ace38f66b	6def7b38-71db-4a33-a6ca-bd7dda66512e	.	GTF2I-90	NM_032999	exon7	c.G595C	p.V199L	GGTCGTGTGATGG	.	30	6	28	0	.	0	0	0	0	0	C	74119504	G	C	74119504	3	2	29	1	0	0	0	0	1	0	0	0	6888	1377	48	3	617	3	GTF2I	7	74119504	Missense_Mutation	SNP	G	TCGA-OR-A5K8-01A-11D-A29I-10	43484843	74119504	85019159	37	5043										
CUX1	1523	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	101821789	101821789	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.03125	3	1	1.04176829268293	4.63008130081301	0	0.142857142857143	0.738095238095239	0	gacccgctccagcctagaagTtgagttggccgccaaggagc	13	13	0	2	rs146654997		TCGA-OR-A5K8-01A-11D-A29I-10	TCGA-OR-A5K8-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	104c32cd-f89e-4198-9108-033ace38f66b	6def7b38-71db-4a33-a6ca-bd7dda66512e	.	CUX1-160	NM_001202543	exon11	c.T902C	p.V301A	TAGAAGTTGAGTT	.	297	42	238	1	T|1.000;C|0.000	5	5	0	0	0	C	101821789	T	C	101821789	3	2	29	1	0	0	0	0	1	0	0	0	4070	1725	60	4	978	4	CUX1	7	101821789	Missense_Mutation	SNP	T	TCGA-OR-A5K8-01A-11D-A29I-10	27702285	101821789	57316874	38	5044										
TMEM168	64418	broad.mit.edu	37	chr7	112424402	112424402	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.03125	3	1	1.04176829268293	4.63008130081301	0	0.142857142857143	0.738095238095239	0	tggcaaatccaacaagctccAgaaattcaactgtggttagt	8	9	1	1	novel		TCGA-OR-A5K8-01A-11D-A29I-10	TCGA-OR-A5K8-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	104c32cd-f89e-4198-9108-033ace38f66b	6def7b38-71db-4a33-a6ca-bd7dda66512e	.	TMEM168-91	NM_022484	exon2	c.T479C	p.L160P	AGCTCCAGAAATT	.	162	6	109	0	.	0	0	0	0	0	G	112424402	A	G	112424402	3	3	29	1	0	0	0	0	1	0	0	0	16120	188	7	4	1630	4	TMEM168	7	112424402	Missense_Mutation	SNP	A	TCGA-OR-A5K8-01A-11D-A29I-10	10602613	112424402	46714261	39	5045										
RP1	6101	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	55540356	55540356	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.03125	3	1	1.04176829268293	4.63008130081301	0	0.142857142857143	0.738095238095239	0	cctaggagaggtctgttcacTtactgatactgtgttttctg	10	8	3	2	novel		TCGA-OR-A5K8-01A-11D-A29I-10	TCGA-OR-A5K8-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	104c32cd-f89e-4198-9108-033ace38f66b	6def7b38-71db-4a33-a6ca-bd7dda66512e	.	RP1-102	NM_006269	exon4	c.T3914C	p.L1305P	GTTCACTTACTGA	.	116	17	118	0	.	0	0	0	0	0	C	55540356	T	C	55540356	3	2	29	1	0	0	0	0	1	0	0	0	13567	1609	56	4	3924	4	RP1	8	55540356	Missense_Mutation	SNP	T	TCGA-OR-A5K8-01A-11D-A29I-10		55540356	90823666	40	5046										
CYP11B2	1585	broad.mit.edu	37	chr8	143996654	143996654	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.03125	3	1	1.04176829268293	4.63008130081301	0	0.142857142857143	0.738095238095239	0	tcggttgaagcgccattcagGcccattcctacagaggccag	11	13	1	2	novel		TCGA-OR-A5K8-01A-11D-A29I-10	TCGA-OR-A5K8-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	104c32cd-f89e-4198-9108-033ace38f66b	6def7b38-71db-4a33-a6ca-bd7dda66512e	.	CYP11B2-90	NM_000498	exon3	c.C403A	p.P135T	ATTCAGGCCCATT	.	78	7	113	1	.	0	0	0	0	0	T	143996654	G	T	143996654	3	4	29	1	0	0	0	0	1	0	0	0	4152	1203	42	3	1136	3	CYP11B2	8	143996654	Missense_Mutation	SNP	G	TCGA-OR-A5K8-01A-11D-A29I-10	88456298	143996654	2367368	41	5047										
PLEC	5339	hgsc.bcm.edu	37	chr8	144998169	144998169	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.03125	3	1	1.04176829268293	4.63008130081301	0	0.142857142857143	0.738095238095239	0	cgccgccgctcctcctccgcCgccagctgccgctgcctcgc	10	24	0	0	rs1140522	byfrequency	TCGA-OR-A5K8-01A-11D-A29I-10	TCGA-OR-A5K8-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	104c32cd-f89e-4198-9108-033ace38f66b	6def7b38-71db-4a33-a6ca-bd7dda66512e	.	PLEC-141	NM_201380	exon31	c.G6339A	p.A2113A	CTCCGCCGCCAGC	.	13	13	0	0	C|0.740;T|0.260	0	0	0	0	0	T	144998169	C	T	144998169	2	4	29	1	0	0	0	0	0	0	0	1	12081	639	23	1		1	PLEC	8	144998169	Silent	SNP	C	TCGA-OR-A5K8-01A-11D-A29I-10	1001515	144998169	1365853	42	5048			2	27		4	4	3420	N	C_A	1.969073e-07
PLEC	5339	hgsc.bcm.edu	37	chr8	144998190	144998190	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.03125	3	1	1.04176829268293	4.63008130081301	0	0.142857142857143	0.738095238095239	0	gccagctgccgctgcctcgcAgcctccagctcggcctgctc	11	20	0	0	rs2857829	byfrequency	TCGA-OR-A5K8-01A-11D-A29I-10	TCGA-OR-A5K8-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	104c32cd-f89e-4198-9108-033ace38f66b	6def7b38-71db-4a33-a6ca-bd7dda66512e	.	PLEC-141	NM_201380	exon31	c.T6318C	p.A2106A	CCTCGCAGCCTCC	.	21	21	0	0	A|0.738;G|0.262	1	0	1	0	0	G	144998190	A	G	144998190	2	3	29	1	0	0	0	0	0	0	0	1	12081	175	7	4		4	PLEC	8	144998190	Silent	SNP	A	TCGA-OR-A5K8-01A-11D-A29I-10	21	144998190	1365832	43	5049			2	27		4	4	3420	N	C_A	1.969073e-07
PLEC	5339	hgsc.bcm.edu	37	chr8	144998868	144998868	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.03125	3	1	1.04176829268293	4.63008130081301	0	0.142857142857143	0.738095238095239	0	cgtttctgcgtggctgcagcCgcctcacgctgcagccgggc	14	16	2	0	rs140406501	by1000genomes	TCGA-OR-A5K8-01A-11D-A29I-10	TCGA-OR-A5K8-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	104c32cd-f89e-4198-9108-033ace38f66b	6def7b38-71db-4a33-a6ca-bd7dda66512e	.	PLEC-141	NM_201380	exon31	c.G5640A	p.A1880A	TGCAGCCGCCTCA	.	9	8	0	0	C|0.978;T|0.022	1	0	1	0	0	T	144998868	C	T	144998868	2	4	29	1	0	0	0	0	0	0	0	1	12081	639	23	1		1	PLEC	8	144998868	Silent	SNP	C	TCGA-OR-A5K8-01A-11D-A29I-10	678	144998868	1365154	44	5050			2	27		4	4	3420	N	C_A	1.969073e-07
PLEC	5339	hgsc.bcm.edu	37	chr8	145001588	145001588	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.03125	3	1	1.04176829268293	4.63008130081301	0	0.142857142857143	0.738095238095239	0	ccaagcccacctgctcctgcCgcagctgctcccgcacagcc	8	22	0	0	rs11136334	byfrequency	TCGA-OR-A5K8-01A-11D-A29I-10	TCGA-OR-A5K8-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	104c32cd-f89e-4198-9108-033ace38f66b	6def7b38-71db-4a33-a6ca-bd7dda66512e	.	PLEC-141	NM_201380	exon27	c.G4157A	p.R1386Q	TCCTGCCGCAGCT	.	13	12	0	0	C|0.707;T|0.293	0	0	0	0	0	T	145001588	C	T	145001588	3	4	29	1	0	0	0	0	1	0	0	0	12081	652	23	1	9921	1	PLEC	8	145001588	Missense_Mutation	SNP	C	TCGA-OR-A5K8-01A-11D-A29I-10	2720	145001588	1362434	45	5051			2	27		4	4	3420	N	C_A	1.969073e-07
SMARCA2	6595	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr9	2077741	2077741	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.03125	3	1	1.04176829268293	4.63008130081301	0	0.142857142857143	0.738095238095239	0	agagggtggagaaacagtctGccctcctaattaatgggacc	12	9	1	2	novel		TCGA-OR-A5K8-01A-11D-A29I-10	TCGA-OR-A5K8-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	104c32cd-f89e-4198-9108-033ace38f66b	6def7b38-71db-4a33-a6ca-bd7dda66512e	.	SMARCA2-653	NM_139045	exon14	c.G2149T	p.A717S	CAGTCTGCCCTCC	.	246	100	150	0	.	0	0	0	0	0	T	2077741	G	T	2077741	3	4	29	1	0	0	0	0	1	0	0	0	14804	1319	46	3	2199	3	SMARCA2	9	2077741	Missense_Mutation	SNP	G	TCGA-OR-A5K8-01A-11D-A29I-10		2077741	139135690	46	5052										
ERMP1	79956	hgsc.bcm.edu	37	chr9	5832728	5832728	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.03125	3	1	1.04176829268293	4.63008130081301	0	0.142857142857143	0.738095238095239	0	aactccccgcggtgtccagcGgccccgcgtagcacgagctg	13	17	0	0	rs1131727	byfrequency	TCGA-OR-A5K8-01A-11D-A29I-10	TCGA-OR-A5K8-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	104c32cd-f89e-4198-9108-033ace38f66b	6def7b38-71db-4a33-a6ca-bd7dda66512e	.	ERMP1-69	NM_024896	exon1	c.C300G	p.A100A	TCCAGCGGCCCCG	.	22	11	2	0	G|0.572;C|0.428	1	1	0	0	0	C	5832728	G	C	5832728	2	2	29	1	0	0	0	0	0	0	0	1	5249	1103	39	2		2	ERMP1	9	5832728	Silent	SNP	G	TCGA-OR-A5K8-01A-11D-A29I-10	3754987	5832728	135380703	47	5053										
MLLT3	4300	hgsc.bcm.edu	37	chr9	20414349	20414349	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.03125	3	1	1.04176829268293	4.63008130081301	0	0.142857142857143	0.738095238095239	0	ctgctgctgctgctactgctGctgctgctgctgctgctgct	12	14	0	0	novel		TCGA-OR-A5K8-01A-11D-A29I-10	TCGA-OR-A5K8-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	104c32cd-f89e-4198-9108-033ace38f66b	6def7b38-71db-4a33-a6ca-bd7dda66512e	.	MLLT3-660	NM_004529	exon5	c.C495T	p.S165S	ACTGCTGCTGCTG	.	42	9	30	0	.	2	2	0	0	0	A	20414349	G	A	20414349	2	1	29	1	0	0	0	0	0	0	0	1	9656	1310	46	3		3	MLLT3	9	20414349	Silent	SNP	G	TCGA-OR-A5K8-01A-11D-A29I-10	14581621	20414349	120799082	48	5054										
BAG1	573	hgsc.bcm.edu	37	chr9	33264540	33264540	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.03125	3	1	1.04176829268293	4.63008130081301	0	0.142857142857143	0.738095238095239	0	actccgggcaggtggacgccCagagggaggcggaccacgct	17	13	0	1	rs1071545		TCGA-OR-A5K8-01A-11D-A29I-10	TCGA-OR-A5K8-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	104c32cd-f89e-4198-9108-033ace38f66b	6def7b38-71db-4a33-a6ca-bd7dda66512e	.	BAG1-228	NM_004323	exon1	c.G133C	p.G45R	GACGCCCAGAGGG	.	19	19	0	0	C|0.976;G|0.024	3	0	3	0	0	G	33264540	C	G	33264540	3	3	29	1	0	0	0	0	1	0	0	0	1287	594	21	3	932	3	BAG1	9	33264540	Missense_Mutation	SNP	C	TCGA-OR-A5K8-01A-11D-A29I-10	12850191	33264540	107948891	49	5055										
NCBP1	4686	hgsc.bcm.edu	37	chr9	100396172	100396172	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.03125	3	1	1.04176829268293	4.63008130081301	0	0.142857142857143	0.738095238095239	0	ccggagggcagcatgtcgcgGcggcggcacagcgacgagaa	18	12	0	1	rs117645731	byfrequency	TCGA-OR-A5K8-01A-11D-A29I-10	TCGA-OR-A5K8-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	104c32cd-f89e-4198-9108-033ace38f66b	6def7b38-71db-4a33-a6ca-bd7dda66512e	.	NCBP1-90	NM_002486	exon1	c.G9A	p.R3R	GTCGCGGCGGCGG	.	116	66	5	0	G|0.991;A|0.009	0	0	0	0	0	A	100396172	G	A	100396172	2	1	29	1	0	0	0	0	0	0	0	1	10240	1190	42	3		3	NCBP1	9	100396172	Silent	SNP	G	TCGA-OR-A5K8-01A-11D-A29I-10	67131632	100396172	40817259	50	5056										
KIAA1984	84960	hgsc.bcm.edu	37	chr9	139694613	139694613	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.03125	3	1	1.04176829268293	4.63008130081301	0	0.142857142857143	0.738095238095239	0	ccagcaaggaggagctgcggCtgctgcaggtggagaggcgg	20	9	0	1	rs35342663	byfrequency	TCGA-OR-A5K8-01A-11D-A29I-10	TCGA-OR-A5K8-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	104c32cd-f89e-4198-9108-033ace38f66b	6def7b38-71db-4a33-a6ca-bd7dda66512e	.	KIAA1984-91	NM_001039374	exon4	c.C430A	p.L144M	CTGCGGCTGCTGC	.	25	9	2	0	C|0.928;A|0.072	0	0	0	0	0	A	139694613	C	A	139694613	3	1	29	1	0	0	0	0	1	0	0	0	8287	796	28	3	444	3	KIAA1984	9	139694613	Missense_Mutation	SNP	C	TCGA-OR-A5K8-01A-11D-A29I-10	39298441	139694613	1518818	51	5057										
ADARB2	105	hgsc.bcm.edu	37	chr10	1405402	1405402	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.03125	3	1	1.04176829268293	4.63008130081301	0	0.142857142857143	0.738095238095239	0	gaagctccgcgcgcgccgctCggccggttctgccagacaca	13	17	1	1	rs191180422		TCGA-OR-A5K8-01A-11D-A29I-10	TCGA-OR-A5K8-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	104c32cd-f89e-4198-9108-033ace38f66b	6def7b38-71db-4a33-a6ca-bd7dda66512e	.	ADARB2-153	NM_018702	exon3	c.G898A	p.E300K	GCCGCTCGGCCGG	.	17	10	0	0	.	0	0	0	0	0	T	1405402	C	T	1405402	3	4	29	1	0	0	0	0	1	0	0	0	283	893	31	1	1353	1	ADARB2	10	1405402	Missense_Mutation	SNP	C	TCGA-OR-A5K8-01A-11D-A29I-10		1405402	134129345	52	5058										
GPRIN2	9721	hgsc.bcm.edu	37	chr10	47000217	47000217	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.03125	3	1	1.04176829268293	4.63008130081301	0	0.142857142857143	0.738095238095239	0	tgtcatgcagtccctgcggcGccccagctgctgcggctgct	13	16	1	0	rs72780221	byfrequency	TCGA-OR-A5K8-01A-11D-A29I-10	TCGA-OR-A5K8-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	104c32cd-f89e-4198-9108-033ace38f66b	6def7b38-71db-4a33-a6ca-bd7dda66512e	.	GPRIN2-90	NM_014696	exon3	c.G1337A	p.R446H	TGCGGCGCCCCAG	.	16	7	1	0	G|0.901;A|0.099	0	0	0	0	0	A	47000217	G	A	47000217	3	1	29	1	0	0	0	0	1	0	0	0	6751	1087	38	1	1339	1	GPRIN2	10	47000217	Missense_Mutation	SNP	G	TCGA-OR-A5K8-01A-11D-A29I-10	45594815	47000217	88534530	53	5059										
TAF5	6877	hgsc.bcm.edu	37	chr10	105128134	105128134	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.03125	3	1	1.04176829268293	4.63008130081301	0	0.142857142857143	0.738095238095239	0	tggaggaggcagtggcgggcTccggagccccgggagaggtg	22	9	0	1	rs10883859	byfrequency	TCGA-OR-A5K8-01A-11D-A29I-10	TCGA-OR-A5K8-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	104c32cd-f89e-4198-9108-033ace38f66b	6def7b38-71db-4a33-a6ca-bd7dda66512e	.	TAF5-92	NM_006951	exon1	c.T388G	p.S130A	GCGGGCTCCGGAG	.	20	8	0	0	T|0.623;G|0.377	0	0	0	0	0	G	105128134	T	G	105128134	3	3	29	1	0	0	0	0	1	0	0	0	15565	1551	54	5	390	5	TAF5	10	105128134	Missense_Mutation	SNP	T	TCGA-OR-A5K8-01A-11D-A29I-10	58127917	105128134	30406613	54	5060										
CDHR5	53841	broad.mit.edu	37	chr11	617527	617527	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.03125	3	1	1.04176829268293	4.63008130081301	0	0.142857142857143	0.738095238095239	0	gccaaaccagacagccttgtAcccgccctccggccgccgct	9	20	0	1	novel		TCGA-OR-A5K8-01A-11D-A29I-10	TCGA-OR-A5K8-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	104c32cd-f89e-4198-9108-033ace38f66b	6def7b38-71db-4a33-a6ca-bd7dda66512e	.	CDHR5-90	NM_021924	exon15	c.T2362G	p.Y788D	CCTTGTACCCGCC	.	128	29	35	4	.	0	0	0	0	0	C	617527	A	C	617527	3	2	29	1	0	0	0	0	1	0	0	0	3128	391	14	5	179	5	CDHR5	11	617527	Missense_Mutation	SNP	A	TCGA-OR-A5K8-01A-11D-A29I-10		617527	134388989	55	5061										
MUC2	4583	broad.mit.edu	37	chr11	1092947	1092947	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.03125	3	1	1.04176829268293	4.63008130081301	0	0.142857142857143	0.738095238095239	0	atcgacacccatcaccaccaCcactacggtgaccccaaccc	4	21	1	1	novel		TCGA-OR-A5K8-01A-11D-A29I-10	TCGA-OR-A5K8-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	104c32cd-f89e-4198-9108-033ace38f66b	6def7b38-71db-4a33-a6ca-bd7dda66512e	.	MUC2-90	NM_002457	exon30	c.C4766T	p.T1589I	CCACCACCACTAC	.	100	4	86	1	.	0	0	0	0	0	T	1092947	C	T	1092947	3	4	29	1	0	0	0	0	1	0	0	0	10003	507	18	3	4884	3	MUC2	11	1092947	Missense_Mutation	SNP	C	TCGA-OR-A5K8-01A-11D-A29I-10	475420	1092947	133913569	56	5062										
TPCN2	219931	bcgsc.ca	37	chr11	68851466	68851466	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.03125	3	1	1.04176829268293	4.63008130081301	0	0.142857142857143	0.738095238095239	0	ctggtgcagaacatgcgtgcGtttggcgggatcctggtggt	17	8	0	1	rs896973	byfrequency	TCGA-OR-A5K8-01A-11D-A29I-10	TCGA-OR-A5K8-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	104c32cd-f89e-4198-9108-033ace38f66b	6def7b38-71db-4a33-a6ca-bd7dda66512e	.	TPCN2-90	NM_139075	exon19	c.G1743T	p.A581A	GCGTGCGTTTGGC	.	178	8	239	1	G|0.583;T|0.417	1	1	0	0	0	T	68851466	G	T	68851466	2	4	29	1	0	0	0	0	0	0	0	1	16434	1132	40	2		2	TPCN2	11	68851466	Silent	SNP	G	TCGA-OR-A5K8-01A-11D-A29I-10	67758519	68851466	66155050	57	5063										
ATF7IP	55729	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	14610191	14610191	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.03125	3	1	1.04176829268293	4.63008130081301	0	0.142857142857143	0.738095238095239	0	gtccaaaagaaatgtaagcgAgagtgcaccaccatcctttc	8	11	0	2	novel		TCGA-OR-A5K8-01A-11D-A29I-10	TCGA-OR-A5K8-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	104c32cd-f89e-4198-9108-033ace38f66b	6def7b38-71db-4a33-a6ca-bd7dda66512e	.	ATF7IP-252	NM_018179	exon8	c.A2120C	p.E707A	TAAGCGAGAGTGC	.	115	62	83	0	.	1	1	0	0	0	C	14610191	A	C	14610191	3	2	29	1	0	0	0	0	1	0	0	0	1088	304	11	5	2146	5	ATF7IP	12	14610191	Missense_Mutation	SNP	A	TCGA-OR-A5K8-01A-11D-A29I-10		14610191	119241704	58	5064										
ALDH1L2	160428	hgsc.bcm.edu	37	chr12	105478202	105478202	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.03125	3	1	1.04176829268293	4.63008130081301	0	0.142857142857143	0.738095238095239	0	gcgccggagcgcctggctgcCccgccgcagcatgctggaga	16	16	0	1	novel		TCGA-OR-A5K8-01A-11D-A29I-10	TCGA-OR-A5K8-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	104c32cd-f89e-4198-9108-033ace38f66b	6def7b38-71db-4a33-a6ca-bd7dda66512e	.	ALDH1L2-91	NM_001034173	exon1	c.G13A	p.G5S	GGCTGCCCCGCCG	.	14	9	0	0	.	0	0	0	0	0	T	105478202	C	T	105478202	3	4	29	1	0	0	0	0	1	0	0	0	495	623	22	3	2850	3	ALDH1L2	12	105478202	Missense_Mutation	SNP	C	TCGA-OR-A5K8-01A-11D-A29I-10	90868011	105478202	28373693	59	5065										
EFHA1	221154	hgsc.bcm.edu	37	chr13	22178258	22178258	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.03125	3	1	1.04176829268293	4.63008130081301	0	0.142857142857143	0.738095238095239	0	tttccgccccaggccgccacCcgcgcgcagctacccgcagc	10	22	0	0	rs9509812	byfrequency	TCGA-OR-A5K8-01A-11D-A29I-10	TCGA-OR-A5K8-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	104c32cd-f89e-4198-9108-033ace38f66b	6def7b38-71db-4a33-a6ca-bd7dda66512e	.	EFHA1-90	NM_152726	exon1	c.G30A	p.R10R	CGCCACCCGCGCG	.	28	27	0	0	C|0.873;T|0.127	2	0	2	0	0	T	22178258	C	T	22178258	2	4	29	1	0	0	0	0	0	0	0	1	4954	610	22	3		3	EFHA1	13	22178258	Silent	SNP	C	TCGA-OR-A5K8-01A-11D-A29I-10		22178258	92991620	60	5066										
DLEU7	220107	hgsc.bcm.edu	37	chr13	51417535	51417535	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.03125	3	1	1.04176829268293	4.63008130081301	0	0.142857142857143	0.738095238095239	0	cctcctcctctggggagttcGcccgcgccgcggtccgccga	13	19	1	0	rs898861		TCGA-OR-A5K8-01A-11D-A29I-10	TCGA-OR-A5K8-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	104c32cd-f89e-4198-9108-033ace38f66b	6def7b38-71db-4a33-a6ca-bd7dda66512e	.	.	NM_198989	exon1	c.C248T	p.A83V	GAGTTCGCCCGCG	.	10	9	0	0	G|0.789;A|0.211	0	0	0	0	0	A	51417535	G	A	51417535	3	1	29	1	0	0	0	0	1	0	0	0	4564	1087	38	1	242	1	DLEU7	13	51417535	Missense_Mutation	SNP	G	TCGA-OR-A5K8-01A-11D-A29I-10	29239277	51417535	63752343	61	5067										
GALC	2581	bcgsc.ca	37	chr14	88450770	88450770	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.03125	3	1	1.04176829268293	4.63008130081301	0	0.142857142857143	0.738095238095239	0	aatgtccaaatcatggtaacGcttggcgcccacaatccagg	9	12	1	0	rs1805078	byfrequency	TCGA-OR-A5K8-01A-11D-A29I-10	TCGA-OR-A5K8-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	104c32cd-f89e-4198-9108-033ace38f66b	6def7b38-71db-4a33-a6ca-bd7dda66512e	.	GALC-90	NM_000153	exon5	c.C550T	p.R184C	GGTAACGCTTGGC	.	183	10	205	2	G|0.966;A|0.034	0	0	0	0	0	A	88450770	G	A	88450770	3	1	29	1	0	0	0	0	1	0	0	0	6221	1087	38	1	1622	1	GALC	14	88450770	Missense_Mutation	SNP	G	TCGA-OR-A5K8-01A-11D-A29I-10		88450770	18898770	62	5068										
ITPK1	3705	hgsc.bcm.edu	37	chr14	93408017	93408017	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.03125	3	1	1.04176829268293	4.63008130081301	0	0.142857142857143	0.738095238095239	0	ggcagcttggcggtgccgccCgcgtcggcctcagccttcca	14	17	1	0	novel		TCGA-OR-A5K8-01A-11D-A29I-10	TCGA-OR-A5K8-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	104c32cd-f89e-4198-9108-033ace38f66b	6def7b38-71db-4a33-a6ca-bd7dda66512e	.	ITPK1-115	NM_001142593	exon11	c.G1134A	p.A378A	GCCGCCCGCGTCG	.	12	12	0	0	.	0	0	0	0	0	T	93408017	C	T	93408017	2	4	29	1	0	0	0	0	0	0	0	1	7937	639	23	1		1	ITPK1	14	93408017	Silent	SNP	C	TCGA-OR-A5K8-01A-11D-A29I-10	4957247	93408017	13941523	63	5069										
SNURF	8926	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr15	25207273	25207273	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.03125	3	1	1.04176829268293	4.63008130081301	0	0.142857142857143	0.738095238095239	0	tgtttcagggatcgcttacaCctgagacgaactacagaaca	9	10	1	2	rs426541	byfrequency;alternate_allele	TCGA-OR-A5K8-01A-11D-A29I-10	TCGA-OR-A5K8-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	104c32cd-f89e-4198-9108-033ace38f66b	6def7b38-71db-4a33-a6ca-bd7dda66512e	.	SNURF-90	NM_005678	exon2	c.C27A	p.H9Q	CTTACACCTGAGA	.	112	17	109	0	C|0.990;T|0.010	0	0	0	0	0	A	25207273	C	A	25207273	3	1	29	1	0	0	0	0	1	0	0	0	14913	506	18	3	33	3	SNURF	15	25207273	Missense_Mutation	SNP	C	TCGA-OR-A5K8-01A-11D-A29I-10		25207273	77324119	64	5070										
CDAN1	146059	bcgsc.ca	37	chr15	43017426	43017426	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.03125	3	1	1.04176829268293	4.63008130081301	0	0.142857142857143	0.738095238095239	0	cccttctccaccagctcccgTagcaagaatagcagcaagtc	7	16	1	1	rs16957091	byfrequency	TCGA-OR-A5K8-01A-11D-A29I-10	TCGA-OR-A5K8-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	104c32cd-f89e-4198-9108-033ace38f66b	6def7b38-71db-4a33-a6ca-bd7dda66512e	.	CDAN1-92	NM_138477	exon27	c.A3474C	p.L1158L	CTCCCGTAGCAAG	.	115	7	165	2	T|0.565;G|0.435	9	9	0	0	0	G	43017426	T	G	43017426	2	3	29	1	0	0	0	0	0	0	0	1	3060	1625	57	5		5	CDAN1	15	43017426	Silent	SNP	T	TCGA-OR-A5K8-01A-11D-A29I-10	17810153	43017426	59513966	65	5071										
UBR1	197131	bcgsc.ca	37	chr15	43256191	43256191	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.03125	3	1	1.04176829268293	4.63008130081301	0	0.142857142857143	0.738095238095239	0	gaagagcaggaacaaatttgTaggtaaagatagatagctac	11	4	0	3	rs3917223	byfrequency	TCGA-OR-A5K8-01A-11D-A29I-10	TCGA-OR-A5K8-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	104c32cd-f89e-4198-9108-033ace38f66b	6def7b38-71db-4a33-a6ca-bd7dda66512e	.	UBR1-91	NM_174916	exon42	c.A4642G	p.T1548A	AATTTGTAGGTAA	.	74	4	82	0	T|0.630;G|0.013;C|0.038;A|0.319	0	0	0	0	0	C	43256191	T	C	43256191	3	2	29	1	0	0	0	0	1	0	0	0	16939	1638	57	4	631	4	UBR1	15	43256191	Missense_Mutation	SNP	T	TCGA-OR-A5K8-01A-11D-A29I-10	238765	43256191	59275201	66	5072										
PKD1	5310	hgsc.bcm.edu	37	chr16	2156447	2156447	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.03125	3	1	1.04176829268293	4.63008130081301	0	0.142857142857143	0.738095238095239	0	gagggcgtgcacagcgcccaGtgggaagaggcggcaagagc	19	10	0	2	rs2003782	bycluster;byfrequency;by1000genomes	TCGA-OR-A5K8-01A-11D-A29I-10	TCGA-OR-A5K8-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	104c32cd-f89e-4198-9108-033ace38f66b	6def7b38-71db-4a33-a6ca-bd7dda66512e	.	PKD1-91	NM_000296	exon18	c.C7441T	p.L2481L	CGCCCAGTGGGAA	.	41	23	0	0	G|0.793;A|0.207	7	7	0	0	0	A	2156447	G	A	2156447	2	1	29	1	0	0	0	0	0	0	0	1	11992	1020	36	3		3	PKD1	16	2156447	Silent	SNP	G	TCGA-OR-A5K8-01A-11D-A29I-10		2156447	88198306	67	5073										
SETD1A	9739	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr16	30976945	30976945	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.03125	3	1	1.04176829268293	4.63008130081301	0	0.142857142857143	0.738095238095239	0	tctccatgctcttctggagaCgacatggagatctccgacga	10	12	4	2	rs146323096		TCGA-OR-A5K8-01A-11D-A29I-10	TCGA-OR-A5K8-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	104c32cd-f89e-4198-9108-033ace38f66b	6def7b38-71db-4a33-a6ca-bd7dda66512e	.	SETD1A-93	NM_014712	exon8	c.C1743T	p.D581D	TGGAGACGACATG	.	75	38	71	0	C|1.000;T|0.000	0	0	0	0	0	T	30976945	C	T	30976945	2	4	29	1	0	0	0	0	0	0	0	1	14165	535	19	1		1	SETD1A	16	30976945	Silent	SNP	C	TCGA-OR-A5K8-01A-11D-A29I-10	28820498	30976945	59377808	68	5074										
BCAR1	9564	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr16	75269596	75269596	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.03125	3	1	1.04176829268293	4.63008130081301	0	0.142857142857143	0.738095238095239	0	actgtcgaccacgccaccatCagccacctcaggaggaagca	9	16	2	0	novel		TCGA-OR-A5K8-01A-11D-A29I-10	TCGA-OR-A5K8-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	104c32cd-f89e-4198-9108-033ace38f66b	6def7b38-71db-4a33-a6ca-bd7dda66512e	.	BCAR1-1145	NM_001170714	exon6	c.G1339C	p.D447H	CACCATCAGCCAC	.	207	96	81	0	.	11	8	3	0	0	G	75269596	C	G	75269596	3	3	29	1	0	0	0	0	1	0	0	0	1349	826	29	3	1423	3	BCAR1	16	75269596	Missense_Mutation	SNP	C	TCGA-OR-A5K8-01A-11D-A29I-10	44292651	75269596	15085157	69	5075										
ADAD2	161931	hgsc.bcm.edu	37	chr16	84224967	84224967	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.03125	3	1	1.04176829268293	4.63008130081301	0	0.142857142857143	0.738095238095239	0	ccaggcccaaagtgcctgggGgcccgcgcccgcgcccgcga	15	19	0	0	rs8044695	byfrequency	TCGA-OR-A5K8-01A-11D-A29I-10	TCGA-OR-A5K8-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	104c32cd-f89e-4198-9108-033ace38f66b	6def7b38-71db-4a33-a6ca-bd7dda66512e	.	ADAD2-68	NM_001145400	exon1	c.G131A	p.G44E	CCTGGGGGCCCGC	.	12	10	0	0	G|0.292;A|0.708	0	0	0	0	0	A	84224967	G	A	84224967	3	1	29	1	0	0	0	0	1	0	0	0	232	1232	43	3	133	3	ADAD2	16	84224967	Missense_Mutation	SNP	G	TCGA-OR-A5K8-01A-11D-A29I-10	8955371	84224967	6129786	70	5076										
ZFPM1	161882	hgsc.bcm.edu	37	chr16	88599696	88599697	+	Frame_Shift_Del	DEL	GA	GA	-													0.03125	3	1	1.04176829268293	4.63008130081301	0	0.142857142857143	0.738095238095239	0	ccaacggagaggccagagcgGagcctctggcccagaatgga					rs67549438	alternate_allele	TCGA-OR-A5K8-01A-11D-A29I-10	TCGA-OR-A5K8-10A-01D-A29L-10	GA	GA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	104c32cd-f89e-4198-9108-033ace38f66b	6def7b38-71db-4a33-a6ca-bd7dda66512e	.	ZFPM1-90	NM_153813	exon10	c.1330_1331del	p.444_444del	AGAGCGGAGCCTC	.	14	12	0	0	.	0	0	0	0	0	-	88599697	GA	-	88599696	7	5	29	1	0	1	0	1	0	0	0	0	17694	1175	41	0	1368	0	ZFPM1	16	88599696	Frame_Shift_Del	DEL	GA	TCGA-OR-A5K8-01A-11D-A29I-10	4374729	88599696	1755057	71	5077	40	2								
ZFPM1	161882	hgsc.bcm.edu	37	chr16	88599697	88599705	+	In_Frame_Del	DEL	AGCCTCTGG	AGCCTCTGG	-													0.03125	3	1	1.04176829268293	4.63008130081301	0	0.142857142857143	0.738095238095239	0	caacggagaggccagagcggAgcctctggcccagaatggag					novel		TCGA-OR-A5K8-01A-11D-A29I-10	TCGA-OR-A5K8-10A-01D-A29L-10	AGCCTCTGG	AGCCTCTGG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	104c32cd-f89e-4198-9108-033ace38f66b	6def7b38-71db-4a33-a6ca-bd7dda66512e	.	ZFPM1-90	NM_153813	exon10	c.1331_1339del	p.444_447del	GAGCGGAGCCTCT	.	14	0	0	0	.	0	0	0	0	0	-	88599705	AGCCTCTGG	-	88599697	7	5	29	1	0	1	0	1	0	0	0	0	17694	304	11	0	1369	0	ZFPM1	16	88599697	In_Frame_Del	DEL	AGCCTCTGG	TCGA-OR-A5K8-01A-11D-A29I-10	1	88599697	1755056	72	5078	40	2								
MINK1	50488	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	4798460	4798460	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.03125	3	1	1.04176829268293	4.63008130081301	0	0.142857142857143	0.738095238095239	0	cgtgaatcccaccaacacccGggcccacagtgagacccctg	9	18	0	2	novel		TCGA-OR-A5K8-01A-11D-A29I-10	TCGA-OR-A5K8-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	104c32cd-f89e-4198-9108-033ace38f66b	6def7b38-71db-4a33-a6ca-bd7dda66512e	.	MINK1-943	NM_153827	exon25	c.G3008A	p.R1003Q	ACACCCGGGCCCA	.	98	83	121	0	.	2	0	2	0	0	A	4798460	G	A	4798460	3	1	29	1	0	0	0	0	1	0	0	0	9615	1116	39	1	2873	1	MINK1	17	4798460	Missense_Mutation	SNP	G	TCGA-OR-A5K8-01A-11D-A29I-10		4798460	76396750	73	5079										
CRHR1	1394	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	43907881	43907881	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.03125	3	1	1.04176829268293	4.63008130081301	0	0.142857142857143	0.738095238095239	0	tacctgcacacagccatcgtGctcacctactccactgaccg	6	18	1	1	novel		TCGA-OR-A5K8-01A-11D-A29I-10	TCGA-OR-A5K8-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	104c32cd-f89e-4198-9108-033ace38f66b	6def7b38-71db-4a33-a6ca-bd7dda66512e	.	CRHR1-522	NM_001145146	exon8	c.G741A	p.V247V	CATCGTGCTCACC	.	89	77	114	0	.	0	0	0	0	0	A	43907881	G	A	43907881	2	1	29	1	0	0	0	0	0	0	0	1	3877	1306	46	3		3	CRHR1	17	43907881	Silent	SNP	G	TCGA-OR-A5K8-01A-11D-A29I-10	39109421	43907881	37287329	74	5080										
PGS1	9489	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	76394346	76394346	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.03125	3	1	1.04176829268293	4.63008130081301	0	0.142857142857143	0.738095238095239	0	ttggtaggtggactgcctggAaagtactctagaaaagtcac	12	7	2	1	novel		TCGA-OR-A5K8-01A-11D-A29I-10	TCGA-OR-A5K8-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	104c32cd-f89e-4198-9108-033ace38f66b	6def7b38-71db-4a33-a6ca-bd7dda66512e	.	PGS1-90	NM_024419	exon4	c.A425G	p.E142G	GCCTGGAAAGTAC	.	31	25	54	0	.	0	0	0	0	0	G	76394346	A	G	76394346	3	3	29	1	0	0	0	0	1	0	0	0	11837	246	9	4	439	4	PGS1	17	76394346	Missense_Mutation	SNP	A	TCGA-OR-A5K8-01A-11D-A29I-10	32486465	76394346	4800864	75	5081										
OSBPL1A	114876	bcgsc.ca	37	chr18	21752366	21752366	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.03125	3	1	1.04176829268293	4.63008130081301	0	0.142857142857143	0.738095238095239	0	tttataatttccacattgccAtactgttcgatccacagttt	4	10	0	0	rs2077984	byfrequency	TCGA-OR-A5K8-01A-11D-A29I-10	TCGA-OR-A5K8-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	104c32cd-f89e-4198-9108-033ace38f66b	6def7b38-71db-4a33-a6ca-bd7dda66512e	.	OSBPL1A-94	NM_080597	exon22	c.T2175C	p.Y725Y	ATTGCCATACTGT	.	111	6	183	2	A|0.894;G|0.106	1	1	0	0	0	G	21752366	A	G	21752366	2	3	29	1	0	0	0	0	0	0	0	1	11306	224	8	4		4	OSBPL1A	18	21752366	Silent	SNP	A	TCGA-OR-A5K8-01A-11D-A29I-10		21752366	56324882	76	5082										
ARID3A	1820	hgsc.bcm.edu	37	chr19	929741	929741	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.03125	3	1	1.04176829268293	4.63008130081301	0	0.142857142857143	0.738095238095239	0	atgcgggctgcagctgcgggCctgggacacccagccagccc	15	16	0	0	rs34967265	byfrequency	TCGA-OR-A5K8-01A-11D-A29I-10	TCGA-OR-A5K8-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	104c32cd-f89e-4198-9108-033ace38f66b	6def7b38-71db-4a33-a6ca-bd7dda66512e	.	ARID3A-90	NM_005224	exon2	c.C213T	p.G71G	TGCGGGCCTGGGA	.	11	7	0	0	C|0.865;T|0.135	0	0	0	0	0	T	929741	C	T	929741	2	4	29	1	0	0	0	0	0	0	0	1	916	726	26	3		3	ARID3A	19	929741	Silent	SNP	C	TCGA-OR-A5K8-01A-11D-A29I-10		929741	58199242	77	5083			3	28		2	2	13	N	C_A	3.721255e-05
ARID3A	1820	hgsc.bcm.edu	37	chr19	929753	929753	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.03125	3	1	1.04176829268293	4.63008130081301	0	0.142857142857143	0.738095238095239	0	gctgcgggcctgggacacccAgccagccccggcggctctga	15	17	1	1	rs1799595		TCGA-OR-A5K8-01A-11D-A29I-10	TCGA-OR-A5K8-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	104c32cd-f89e-4198-9108-033ace38f66b	6def7b38-71db-4a33-a6ca-bd7dda66512e	.	ARID3A-90	NM_005224	exon2	c.A225G	p.P75P	ACACCCAGCCAGC	.	13	13	0	0	A|0.114;G|0.886	0	0	0	0	0	G	929753	A	G	929753	2	3	29	1	0	0	0	0	0	0	0	1	916	175	7	4		4	ARID3A	19	929753	Silent	SNP	A	TCGA-OR-A5K8-01A-11D-A29I-10	12	929753	58199230	78	5084			3	28		2	2	13	N	C_A	3.721255e-05
REXO1	57455	hgsc.bcm.edu	37	chr19	1827378	1827415	+	Frame_Shift_Del	DEL	GCCGGCCGCCGGTCGGGAGTCCCCGCTTGTGGGGCTCG	GCCGGCCGCCGGTCGGGAGTCCCCGCTTGTGGGGCTCG	-													0.03125	3	1	1.04176829268293	4.63008130081301	0	0.142857142857143	0.738095238095239	0	agggggcggggtgggcctctGccggccgccggtcgggagtc					novel		TCGA-OR-A5K8-01A-11D-A29I-10	TCGA-OR-A5K8-10A-01D-A29L-10	GCCGGCCGCCGGTCGGGAGTCCCCGCTTGTGGGGCTCG	GCCGGCCGCCGGTCGGGAGTCCCCGCTTGTGGGGCTCG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	104c32cd-f89e-4198-9108-033ace38f66b	6def7b38-71db-4a33-a6ca-bd7dda66512e	.	REXO1-90	NM_020695	exon2	c.1373_1410del	p.458_470del	GCCTCTGCCGGCC	.	20	11	1	0	.	0	0	0	0	0	-	1827415	GCCGGCCGCCGGTCGGGAGTCCCCGCTTGTGGGGCTCG	-	1827378	7	5	29	1	0	1	0	1	0	0	0	0	13276	1306	46	0	2315	0	REXO1	19	1827378	Frame_Shift_Del	DEL	GCCGGCCGCCGGTCGGGAGTCCCCGCTTGTGGGGCTCG	TCGA-OR-A5K8-01A-11D-A29I-10	897625	1827378	57301605	79	5085										
MUC16	94025	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	9060456	9060456	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.03125	3	1	1.04176829268293	4.63008130081301	0	0.142857142857143	0.738095238095239	0	gtgtgggggtcagggtggatGttgactccatctcaattctt	14	7	3	1	novel		TCGA-OR-A5K8-01A-11D-A29I-10	TCGA-OR-A5K8-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	104c32cd-f89e-4198-9108-033ace38f66b	6def7b38-71db-4a33-a6ca-bd7dda66512e	.	MUC16-566	NM_024690	exon3	c.C26990A	p.T8997K	GTGGATGTTGACT	.	213	80	135	1	.	0	0	0	0	0	T	9060456	G	T	9060456	3	4	29	1	0	0	0	0	1	0	0	0	10001	1377	48	3	16861	3	MUC16	19	9060456	Missense_Mutation	SNP	G	TCGA-OR-A5K8-01A-11D-A29I-10	7233078	9060456	50068527	80	5086										
SLC44A2	57153	hgsc.bcm.edu	37	chr19	10745635	10745674	+	Frame_Shift_Del	DEL	CTTTGCCCTTTGCAGTGATCATTCTGAGTATCCTTGAAGT	CTTTGCCCTTTGCAGTGATCATTCTGAGTATCCTTGAAGT	-													0.03125	3	1	1.04176829268293	4.63008130081301	0	0.142857142857143	0.738095238095239	0	gggagcccagccggctcagcCtttgccctttgcagtgatca					novel		TCGA-OR-A5K8-01A-11D-A29I-10	TCGA-OR-A5K8-10A-01D-A29L-10	CTTTGCCCTTTGCAGTGATCATTCTGAGTATCCTTGAAGT	CTTTGCCCTTTGCAGTGATCATTCTGAGTATCCTTGAAGT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	104c32cd-f89e-4198-9108-033ace38f66b	6def7b38-71db-4a33-a6ca-bd7dda66512e	.	SLC44A2-91	NM_020428	exon12	c.956_980del	p.319_327del	CTCAGCCTTTGCC	.	81	28	54	0	.	0	0	0	0	0	-	10745674	CTTTGCCCTTTGCAGTGATCATTCTGAGTATCCTTGAAGT	-	10745635	7	5	29	1	0	1	0	1	0	0	0	0	14671	696	24	0		0	SLC44A2	19	10745635	Frame_Shift_Del	DEL	CTTTGCCCTTTGCAGTGATCATTCTGAGTATCCTTGAAGT	TCGA-OR-A5K8-01A-11D-A29I-10	1685179	10745635	48383348	81	5087										
OR10H3	26532	bcgsc.ca	37	chr19	15852621	15852621	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.03125	3	1	1.04176829268293	4.63008130081301	0	0.142857142857143	0.738095238095239	0	caacatgctaatgagtccccGtggctgtgcccatcttgtgg	11	12	1	1	rs151318110	byfrequency;alternate_allele	TCGA-OR-A5K8-01A-11D-A29I-10	TCGA-OR-A5K8-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	104c32cd-f89e-4198-9108-033ace38f66b	6def7b38-71db-4a33-a6ca-bd7dda66512e	.	OR10H3-68	NM_013938	exon1	c.G419A	p.R140H	GTCCCCGTGGCTG	.	238	114	168	3	G|0.999;T|0.001	0	0	0	0	0	A	15852621	G	A	15852621	3	1	29	1	0	0	0	0	1	0	0	0	10936	1145	40	1	421	1	OR10H3	19	15852621	Missense_Mutation	SNP	G	TCGA-OR-A5K8-01A-11D-A29I-10	5106986	15852621	43276362	82	5088										
ANO8	57719	broad.mit.edu	37	chr19	17438052	17438052	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.03125	3	1	1.04176829268293	4.63008130081301	0	0.142857142857143	0.738095238095239	0	tggcccccctaccttaaaggCctcgcggcgctggtactcca	10	17	0	0	novel		TCGA-OR-A5K8-01A-11D-A29I-10	TCGA-OR-A5K8-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	104c32cd-f89e-4198-9108-033ace38f66b	6def7b38-71db-4a33-a6ca-bd7dda66512e	.	ANO8-93	NM_020959	exon16	c.G2653T	p.A885S	TAAAGGCCTCGCG	.	80	6	63	1	.	0	0	0	0	0	A	17438052	C	A	17438052	3	1	29	1	0	0	0	0	1	0	0	0	703	739	26	3	1057	3	ANO8	19	17438052	Missense_Mutation	SNP	C	TCGA-OR-A5K8-01A-11D-A29I-10	1585431	17438052	41690931	83	5089										
RGS9BP	388531	hgsc.bcm.edu	37	chr19	33167455	33167455	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.03125	3	1	1.04176829268293	4.63008130081301	0	0.142857142857143	0.738095238095239	0	tggaagcggacatgcgacgcGcgctggagctgggcgccgcg	19	12	0	0	rs259290	byfrequency	TCGA-OR-A5K8-01A-11D-A29I-10	TCGA-OR-A5K8-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	104c32cd-f89e-4198-9108-033ace38f66b	6def7b38-71db-4a33-a6ca-bd7dda66512e	.	RGS9BP-90	NM_207391	exon1	c.G286T	p.A96S	CGACGCGCGCTGG	.	12	7	0	0	G|0.540;T|0.460	0	0	0	0	0	T	33167455	G	T	33167455	3	4	29	1	0	0	0	0	1	0	0	0	13349	1087	38	2	288	2	RGS9BP	19	33167455	Missense_Mutation	SNP	G	TCGA-OR-A5K8-01A-11D-A29I-10	15729403	33167455	25961528	84	5090										
NUDT19	390916	hgsc.bcm.edu	37	chr19	33183352	33183352	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.03125	3	1	1.04176829268293	4.63008130081301	0	0.142857142857143	0.738095238095239	0	ctcgccctggagccaccgccGggcctggcctcctggcgcga	14	19	0	0	rs61732600	byfrequency	TCGA-OR-A5K8-01A-11D-A29I-10	TCGA-OR-A5K8-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	104c32cd-f89e-4198-9108-033ace38f66b	6def7b38-71db-4a33-a6ca-bd7dda66512e	.	NUDT19-22	NM_001105570	exon1	c.G486C	p.P162P	ACCGCCGGGCCTG	.	22	8	0	0	G|0.743;C|0.257	0	0	0	0	0	C	33183352	G	C	33183352	2	2	29	1	0	0	0	0	0	0	0	1	10765	1103	39	2		2	NUDT19	19	33183352	Silent	SNP	G	TCGA-OR-A5K8-01A-11D-A29I-10	15897	33183352	25945631	85	5091										
FBXO17	115290	hgsc.bcm.edu	37	chr19	39440918	39440918	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.03125	3	1	1.04176829268293	4.63008130081301	0	0.142857142857143	0.738095238095239	0	agcgcgtccagggccagggaTgggtccgccggcagccgtcg	18	14	0	0	rs2304117	byfrequency	TCGA-OR-A5K8-01A-11D-A29I-10	TCGA-OR-A5K8-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	104c32cd-f89e-4198-9108-033ace38f66b	6def7b38-71db-4a33-a6ca-bd7dda66512e	.	FBXO17-226	NM_148169	exon2	c.A69G	p.P23P	CAGGGATGGGTCC	.	28	10	0	0	T|0.545;C|0.455	0	0	0	0	0	C	39440918	T	C	39440918	2	2	29	1	0	0	0	0	0	0	0	1	5749	1451	51	4		4	FBXO17	19	39440918	Silent	SNP	T	TCGA-OR-A5K8-01A-11D-A29I-10	6257566	39440918	19688065	86	5092										
DLL3	10683	hgsc.bcm.edu	37	chr19	39989862	39989862	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.03125	3	1	1.04176829268293	4.63008130081301	0	0.142857142857143	0.738095238095239	0	ctggcgtcttcgagctgcagAtccactctttcgggccgggt	13	13	2	1	novel		TCGA-OR-A5K8-01A-11D-A29I-10	TCGA-OR-A5K8-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	104c32cd-f89e-4198-9108-033ace38f66b	6def7b38-71db-4a33-a6ca-bd7dda66512e	.	DLL3-1083	NM_016941	exon2	c.A100T	p.I34F	CTGCAGATCCACT	.	29	17	5	0	.	0	0	0	0	0	T	39989862	A	T	39989862	3	4	29	1	0	0	0	0	1	0	0	0	4578	333	12	5	106	5	DLL3	19	39989862	Missense_Mutation	SNP	A	TCGA-OR-A5K8-01A-11D-A29I-10	548944	39989862	19139121	87	5093										
ZNF233	353355	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	44777858	44777858	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.03125	3	1	1.04176829268293	4.63008130081301	0	0.142857142857143	0.738095238095239	0	acagatgtcaggtatatgccCggagctccaaccagaactcc	9	13	1	2	rs143381681		TCGA-OR-A5K8-01A-11D-A29I-10	TCGA-OR-A5K8-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	104c32cd-f89e-4198-9108-033ace38f66b	6def7b38-71db-4a33-a6ca-bd7dda66512e	.	ZNF233-92	NM_001207005	exon5	c.C1045T	p.R349W	TATGCCCGGAGCT	.	138	71	91	1	C|1.000;T|0.000	0	0	0	0	0	T	44777858	C	T	44777858	3	4	29	1	0	0	0	0	1	0	0	0	17823	643	23	1	1059	1	ZNF233	19	44777858	Missense_Mutation	SNP	C	TCGA-OR-A5K8-01A-11D-A29I-10	4787996	44777858	14351125	88	5094										
APOE	348	hgsc.bcm.edu	37	chr19	45411941	45411941	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.03125	3	1	1.04176829268293	4.63008130081301	0	0.142857142857143	0.738095238095239	0	gcgcggacatggaggacgtgTgcggccgcctggtgcagtac	18	11	0	0	rs429358	byfrequency	TCGA-OR-A5K8-01A-11D-A29I-10	TCGA-OR-A5K8-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	104c32cd-f89e-4198-9108-033ace38f66b	6def7b38-71db-4a33-a6ca-bd7dda66512e	.	APOE-90	NM_000041	exon4	c.T388C	p.C130R	GACGTGTGCGGCC	.	74	30	2	0	T|0.861;C|0.139	313	109	204	0	0	C	45411941	T	C	45411941	3	2	29	1	0	0	0	0	1	0	0	0	802	1696	59	4	398	4	APOE	19	45411941	Missense_Mutation	SNP	T	TCGA-OR-A5K8-01A-11D-A29I-10	634083	45411941	13717042	89	5095										
APOE	348	hgsc.bcm.edu	37	chr19	45412079	45412079	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.03125	3	1	1.04176829268293	4.63008130081301	0	0.142857142857143	0.738095238095239	0	atgccgatgacctgcagaagCgcctggcagtgtaccaggcc	13	13	0	2	rs7412	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-OR-A5K8-01A-11D-A29I-10	TCGA-OR-A5K8-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	104c32cd-f89e-4198-9108-033ace38f66b	6def7b38-71db-4a33-a6ca-bd7dda66512e	.	APOE-90	NM_000041	exon4	c.C526T	p.R176C	CAGAAGCGCCTGG	.	12	9	0	0	C|0.933;T|0.067	149	86	62	0	1	T	45412079	C	T	45412079	3	4	29	1	0	0	0	0	1	0	0	0	802	768	27	1	536	1	APOE	19	45412079	Missense_Mutation	SNP	C	TCGA-OR-A5K8-01A-11D-A29I-10	138	45412079	13716904	90	5096										
NR1H2	7376	hgsc.bcm.edu	37	chr19	50881832	50881866	+	Frame_Shift_Del	DEL	GAGTCACAGTCACAGTCGCAGTCACCTGTGGGGCC	GAGTCACAGTCACAGTCGCAGTCACCTGTGGGGCC	-													0.03125	3	1	1.04176829268293	4.63008130081301	0	0.142857142857143	0.738095238095239	0	agattcggaaacagcagcagGagtcacagtcacagtcgcag					novel		TCGA-OR-A5K8-01A-11D-A29I-10	TCGA-OR-A5K8-10A-01D-A29L-10	GAGTCACAGTCACAGTCGCAGTCACCTGTGGGGCC	GAGTCACAGTCACAGTCGCAGTCACCTGTGGGGCC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	104c32cd-f89e-4198-9108-033ace38f66b	6def7b38-71db-4a33-a6ca-bd7dda66512e	.	NR1H2-186	NM_007121	exon6	c.526_560del	p.176_187del	CAGCAGGAGTCAC	.	104	0	72	0	.	0	0	0	0	0	-	50881866	GAGTCACAGTCACAGTCGCAGTCACCTGTGGGGCC	-	50881832	7	5	29	1	0	1	0	1	0	0	0	0	10646	1175	41	0	540	0	NR1H2	19	50881832	Frame_Shift_Del	DEL	GAGTCACAGTCACAGTCGCAGTCACCTGTGGGGCC	TCGA-OR-A5K8-01A-11D-A29I-10	5469753	50881832	8247151	91	5097										
NR1H2	7376	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr19	50881858	50881864	+	Frame_Shift_Del	DEL	TGTGGGG	TGTGGGG	-													0.03125	3	1	1.04176829268293	4.63008130081301	0	0.142857142857143	0.738095238095239	0	cagtcacagtcgcagtcaccTgtggggccgcagggcagcag					novel		TCGA-OR-A5K8-01A-11D-A29I-10	TCGA-OR-A5K8-10A-01D-A29L-10	TGTGGGG	TGTGGGG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	104c32cd-f89e-4198-9108-033ace38f66b	6def7b38-71db-4a33-a6ca-bd7dda66512e	.	NR1H2-186	NM_007121	exon6	c.552_558del	p.184_186del	GTCACCTGTGGGG	.	80	0	59	0	.	0	0	0	0	0	-	50881864	TGTGGGG	-	50881858	7	5	29	1	0	1	0	1	0	0	0	0	10646	1567	55	0	566	0	NR1H2	19	50881858	Frame_Shift_Del	DEL	TGTGGGG	TCGA-OR-A5K8-01A-11D-A29I-10	26	50881858	8247125	92	5098	41	2								
NR1H2	7376	bcgsc.ca	37	chr19	50881865	50881866	+	Missense_Mutation	DNP	CC	CC	AA													0.03125	3	1	1.04176829268293	4.63008130081301	0	0.142857142857143	0.738095238095239	0	agtcgcagtcacctgtggggCcgcagggcagcagcagctca					novel		TCGA-OR-A5K8-01A-11D-A29I-10	TCGA-OR-A5K8-10A-01D-A29L-10	CC	CC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	104c32cd-f89e-4198-9108-033ace38f66b	6def7b38-71db-4a33-a6ca-bd7dda66512e	.	NR1H2-186	NM_007121	exon6	c.C560A	p.P187K	TGGGGCCGCAGGG	.	66	4	57	0	.	0	0	0	0	0	AA	50881866	CC	AA	50881865	3	1	29	1	0	0	0	0	1	0	0	0	10646	739	26	3	573	3	NR1H2	19	50881865	Missense_Mutation	DNP	CC	TCGA-OR-A5K8-01A-11D-A29I-10	7	50881865	8247118	93	5099	41	2								
ACTR5	79913	hgsc.bcm.edu	37	chr20	37377139	37377139	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.03125	3	1	1.04176829268293	4.63008130081301	0	0.142857142857143	0.738095238095239	0	aagatggcggcgaacgtgttCccgttccgcgacgcccgtgc	14	14	0	1	rs2254105	byfrequency	TCGA-OR-A5K8-01A-11D-A29I-10	TCGA-OR-A5K8-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	104c32cd-f89e-4198-9108-033ace38f66b	6def7b38-71db-4a33-a6ca-bd7dda66512e	.	ACTR5-90	NM_024855	exon1	c.C18T	p.F6F	CGTGTTCCCGTTC	.	19	7	0	0	C|0.769;T|0.231	0	0	0	0	0	T	37377139	C	T	37377139	2	4	29	1	0	0	0	0	0	0	0	1	215	854	30	3		3	ACTR5	20	37377139	Silent	SNP	C	TCGA-OR-A5K8-01A-11D-A29I-10		37377139	25648381	94	5100										
SULF2	55959	broad.mit.edu	37	chr20	46300955	46300955	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.03125	3	1	1.04176829268293	4.63008130081301	0	0.142857142857143	0.738095238095239	0	cacttactcttcttgaagagTtttttccggcgtccggccag	9	12	2	2	novel		TCGA-OR-A5K8-01A-11D-A29I-10	TCGA-OR-A5K8-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	104c32cd-f89e-4198-9108-033ace38f66b	6def7b38-71db-4a33-a6ca-bd7dda66512e	.	SULF2-293	NM_001161841	exon11	c.A1563C	p.K521N	GAAGAGTTTTTTC	.	103	6	66	1	.	0	0	0	0	0	G	46300955	T	G	46300955	3	3	29	1	0	0	0	0	1	0	0	0	15408	1722	60	5	1093	5	SULF2	20	46300955	Missense_Mutation	SNP	T	TCGA-OR-A5K8-01A-11D-A29I-10	8923816	46300955	16724565	95	5101										
KCNG1	3755	broad.mit.edu	37	chr20	49626376	49626376	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.03125	3	1	1.04176829268293	4.63008130081301	0	0.142857142857143	0.738095238095239	0	caatcttctgcaggtagcggCgcttgcagcagccgtccagg	13	13	2	0	novel		TCGA-OR-A5K8-01A-11D-A29I-10	TCGA-OR-A5K8-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	104c32cd-f89e-4198-9108-033ace38f66b	6def7b38-71db-4a33-a6ca-bd7dda66512e	.	KCNG1-515	NM_002237	exon2	c.G500T	p.R167L	TAGCGGCGCTTGC	.	106	12	43	1	.	0	0	0	0	0	A	49626376	C	A	49626376	3	1	29	1	0	0	0	0	1	0	0	0	8048	768	27	2	1049	2	KCNG1	20	49626376	Missense_Mutation	SNP	C	TCGA-OR-A5K8-01A-11D-A29I-10	3325421	49626376	13399144	96	5102										
SEPT5	5413	hgsc.bcm.edu	37	chr22	19702147	19702147	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.03125	3	1	1.04176829268293	4.63008130081301	0	0.142857142857143	0.738095238095239	0	cggtacaagagcaagctggcGaccccaggtgagcccagcgc	14	14	0	2	novel		TCGA-OR-A5K8-01A-11D-A29I-10	TCGA-OR-A5K8-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	104c32cd-f89e-4198-9108-033ace38f66b	6def7b38-71db-4a33-a6ca-bd7dda66512e	.	SEPT5-636	NM_002688	exon1	c.G36A	p.A12A	GCTGGCGACCCCA	.	14	14	0	0	.	0	0	0	0	0	A	19702147	G	A	19702147	2	1	29	1	0	0	0	0	0	0	0	1	14102	1045	37	1		1	SEPT5	22	19702147	Silent	SNP	G	TCGA-OR-A5K8-01A-11D-A29I-10		19702147	31602419	97	5103										
CDR1	1038	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	139865766	139865766	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.03125	3	1	1.04176829268293	4.63008130081301	0	0.142857142857143	0.738095238095239	0	gatcttccagtcaatcagtgTcttccagaaagaaatccagg	8	10	4	2	novel		TCGA-OR-A5K8-01A-11D-A29I-10	TCGA-OR-A5K8-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	104c32cd-f89e-4198-9108-033ace38f66b	6def7b38-71db-4a33-a6ca-bd7dda66512e	.	CDR1-130	NM_004065	exon1	c.A766G	p.T256A	TCAGTGTCTTCCA	.	158	147	115	0	.	0	0	0	0	0	C	139865766	T	C	139865766	3	2	29	1	0	0	0	0	1	0	0	0	3177	1667	58	4	26	4	CDR1	23	139865766	Missense_Mutation	SNP	T	TCGA-OR-A5K8-01A-11D-A29I-10		139865766	15404794	98	5104										
GNB1	2782	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	1720546	1720547	+	Missense_Mutation	DNP	CA	CA	AC													0.10188679245283	27	0.00131594018804135	2.23724461158509	2.50494909502262	2.12376118925831	0.0524259106482342	0.532036613272311	15	gcagttgaagtcgtcgtaccCagcaaggaggaggcgcccgc					novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	CA	CA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	GNB1-227	NM_002074	exon10	c.T861G	p.G288W	GTACCCAGCAAGG	.	196	0	197	0	A|0.999;G|0.001	0	0	0	0	0	AC	1720547	CA	AC	1720546	3	1	30	1	0	0	0	0	1	0	0	0	6535	594	21	3	168	3	GNB1	1	1720546	Missense_Mutation	DNP	CA	TCGA-OR-A5K9-01A-11D-A29I-10		1720546	247530075	1	5105										
NOL9	79707	hgsc.bcm.edu	37	chr1	6614391	6614391	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.10188679245283	27	0.00131594018804135	2.23724461158509	2.50494909502262	2.12376118925831	0.0524259106482342	0.532036613272311	15	ctccctccagtccacgccggAcgcctgggcttgcagtaacc	10	18	0	0	rs6693391	byfrequency	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	NOL9-515	NM_024654	exon1	c.T172G	p.S58A	CGCCGGACGCCTG	.	6	6	0	0	A|0.047;C|0.953	0	0	0	0	0	C	6614391	A	C	6614391	3	2	30	1	0	0	0	0	1	0	0	0	10557	275	10	5	1984	5	NOL9	1	6614391	Missense_Mutation	SNP	A	TCGA-OR-A5K9-01A-11D-A29I-10	4893845	6614391	242636230	2	5106										
PINK1	65018	hgsc.bcm.edu	37	chr1	20960230	20960230	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.10188679245283	27	0.00131594018804135	2.23724461158509	2.50494909502262	2.12376118925831	0.0524259106482342	0.532036613272311	15	cgcagggtcgggctcgggctCcctaaccgtctccgcttctt	12	16	2	0	rs45530340	byfrequency	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	PINK1-380	NM_032409	exon1	c.C189T	p.L63L	CGGGCTCCCTAAC	.	6	6	0	0	C|0.868;T|0.132	2	0	2	0	0	T	20960230	C	T	20960230	2	4	30	1	0	0	0	0	0	0	0	1	11961	842	30	3		3	PINK1	1	20960230	Silent	SNP	C	TCGA-OR-A5K9-01A-11D-A29I-10	14345839	20960230	228290391	3	5107										
C1QC	714	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	22973845	22973845	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.10188679245283	27	0.00131594018804135	2.23724461158509	2.50494909502262	2.12376118925831	0.0524259106482342	0.532036613272311	15	caggggtgcccggccccatgGgcatccctggagagccaggt	16	14	0	1	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	C1QC-90	NM_001114101	exon3	c.G307C	p.G103R	CCCATGGGCATCC	.	52	5	45	1	.	42	41	0	1	0	C	22973845	G	C	22973845	3	2	30	1	0	0	0	0	1	0	0	0	1963	1232	43	3	313	3	C1QC	1	22973845	Missense_Mutation	SNP	G	TCGA-OR-A5K9-01A-11D-A29I-10	2013615	22973845	226276776	4	5108										
CSMD2	114784	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	34099087	34099087	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.10188679245283	27	0.00131594018804135	2.23724461158509	2.50494909502262	2.12376118925831	0.0524259106482342	0.532036613272311	15	tgtggccgtcgtgaacctccAccacgtcgttgagggccgtg	14	13	0	2	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	CSMD2-103	NM_052896	exon32	c.T5015C	p.V1672A	ACCTCCACCACGT	.	180	76	153	0	.	0	0	0	0	0	G	34099087	A	G	34099087	3	3	30	1	0	0	0	0	1	0	0	0	3951	159	6	4	5600	4	CSMD2	1	34099087	Missense_Mutation	SNP	A	TCGA-OR-A5K9-01A-11D-A29I-10	11125242	34099087	215151534	5	5109										
KIF2C	11004	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	45227628	45227628	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.10188679245283	27	0.00131594018804135	2.23724461158509	2.50494909502262	2.12376118925831	0.0524259106482342	0.532036613272311	15	cataagctcctgtgaatataCtttaaacaccctgagatatg	6	9	0	2	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	KIF2C-228	NM_006845	exon17	c.C1724T	p.T575I	AATATACTTTAAA	.	153	61	170	0	.	8	2	6	0	0	T	45227628	C	T	45227628	3	4	30	1	0	0	0	0	1	0	0	0	8320	565	20	3	1790	3	KIF2C	1	45227628	Missense_Mutation	SNP	C	TCGA-OR-A5K9-01A-11D-A29I-10	11128541	45227628	204022993	6	5110										
TCTEX1D4	343521	hgsc.bcm.edu	37	chr1	45271828	45271828	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.10188679245283	27	0.00131594018804135	2.23724461158509	2.50494909502262	2.12376118925831	0.0524259106482342	0.532036613272311	15	ggccccagcaccacactgcaTaccagcttgtagcgtggcgg	12	15	0	0	rs17885815	byfrequency	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	TCTEX1D4-91	NM_001013632	exon2	c.A513G	p.V171V	ACTGCATACCAGC	.	10	10	0	0	T|0.859;C|0.141	0	0	0	0	0	C	45271828	T	C	45271828	2	2	30	1	0	0	0	0	0	0	0	1	15758	1393	49	4		4	TCTEX1D4	1	45271828	Silent	SNP	T	TCGA-OR-A5K9-01A-11D-A29I-10	44200	45271828	203978793	7	5111										
CYP4A22	284541	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	47611785	47611785	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.10188679245283	27	0.00131594018804135	2.23724461158509	2.50494909502262	2.12376118925831	0.0524259106482342	0.532036613272311	15	gttttgcaccgggttctgctCaacacagccacgctttcctg	9	14	2	0	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	CYP4A22-139	NM_001010969	exon11	c.C1324A	p.Q442K	TCTGCTCAACACA	.	286	36	270	0	.	0	0	0	0	0	A	47611785	C	A	47611785	3	1	30	1	0	0	0	0	1	0	0	0	4190	827	29	3	1366	3	CYP4A22	1	47611785	Missense_Mutation	SNP	C	TCGA-OR-A5K9-01A-11D-A29I-10	2339957	47611785	201638836	8	5112										
RSBN1	54665	hgsc.bcm.edu	37	chr1	114354654	114354654	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.10188679245283	27	0.00131594018804135	2.23724461158509	2.50494909502262	2.12376118925831	0.0524259106482342	0.532036613272311	15	acagttggggctgcattcgtTggcggcagcggcccaggatg	17	10	0	0	rs3195954	byfrequency	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	RSBN1-91	NM_018364	exon1	c.A381G	p.P127P	ATTCGTTGGCGGC	.	16	15	0	0	T|0.861;C|0.139	1	0	1	0	0	C	114354654	T	C	114354654	2	2	30	1	0	0	0	0	0	0	0	1	13731	1799	63	4		4	RSBN1	1	114354654	Silent	SNP	T	TCGA-OR-A5K9-01A-11D-A29I-10	66742869	114354654	134895967	9	5113										
HMGCS2	3158	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	120295286	120295286	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.10188679245283	27	0.00131594018804135	2.23724461158509	2.50494909502262	2.12376118925831	0.0524259106482342	0.532036613272311	15	tgtgctggacaccaacttgtCcaggggagagcctgggaagc	15	10	0	1	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	HMGCS2-92	NM_005518	exon8	c.G1306C	p.D436H	ACTTGTCCAGGGG	.	178	24	198	0	.	0	0	0	0	0	G	120295286	C	G	120295286	3	3	30	1	0	0	0	0	1	0	0	0	7254	855	30	3	228	3	HMGCS2	1	120295286	Missense_Mutation	SNP	C	TCGA-OR-A5K9-01A-11D-A29I-10	5940632	120295286	128955335	10	5114										
THEM4	117145	hgsc.bcm.edu	37	chr1	151881885	151881885	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.10188679245283	27	0.00131594018804135	2.23724461158509	2.50494909502262	2.12376118925831	0.0524259106482342	0.532036613272311	15	ggcgccggcctactggcggcAggcacagagcccccagcgtg	16	16	0	1	rs3748805		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	THEM4-522	NM_053055	exon1	c.T50G	p.L17R	GGCGGCAGGCACA	.	8	8	0	0	T|0.073;G|0.921	7	0	7	0	0	C	151881885	A	C	151881885	3	2	30	1	0	0	0	0	1	0	0	0	15895	188	7	5	696	5	THEM4	1	151881885	Missense_Mutation	SNP	A	TCGA-OR-A5K9-01A-11D-A29I-10	31586599	151881885	97368736	11	5115										
LOR	4014	hgsc.bcm.edu	37	chr1	153233578	153233578	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.10188679245283	27	0.00131594018804135	2.23724461158509	2.50494909502262	2.12376118925831	0.0524259106482342	0.532036613272311	15	ggtagcagcggttctggctgCggctactccggcggcggtgg	19	11	1	0	rs1143389	bycluster;byfrequency;by1000genomes	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	LOR-90	NM_000427	exon2	c.C153T	p.C51C	TGGCTGCGGCTAC	.	7	7	0	0	C|0.818;T|0.182	0	0	0	0	0	T	153233578	C	T	153233578	2	4	30	1	0	0	0	0	0	0	0	1	8924	776	27	1		1	LOR	1	153233578	Silent	SNP	C	TCGA-OR-A5K9-01A-11D-A29I-10	1351693	153233578	96017043	12	5116										
LOR	4014	hgsc.bcm.edu	37	chr1	153233701	153233701	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.10188679245283	27	0.00131594018804135	2.23724461158509	2.50494909502262	2.12376118925831	0.0524259106482342	0.532036613272311	15	gggagcgtcaagtactccggAggcggcggctcctccggcgg	18	13	1	0	rs1143390	bycluster;byfrequency;by1000genomes	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	LOR-90	NM_000427	exon2	c.A276C	p.G92G	CTCCGGAGGCGGC	.	4	4	0	0	A|0.594;C|0.406	0	0	0	0	0	C	153233701	A	C	153233701	2	2	30	1	0	0	0	0	0	0	0	1	8924	291	11	5		5	LOR	1	153233701	Silent	SNP	A	TCGA-OR-A5K9-01A-11D-A29I-10	123	153233701	96016920	13	5117										
KCNN3	3782	hgsc.bcm.edu	37	chr1	154842252	154842252	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.10188679245283	27	0.00131594018804135	2.23724461158509	2.50494909502262	2.12376118925831	0.0524259106482342	0.532036613272311	15	tgctgctgctgaagctgcggAggctgaggctgcagcgaggg	19	9	0	2	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	KCNN3-91	NM_001204087	exon1	c.T189G	p.P63P	CTGCGGAGGCTGA	.	64	7	3	0	.	0	0	0	0	0	C	154842252	A	C	154842252	2	2	30	1	0	0	0	0	0	0	0	1	8101	291	11	5		5	KCNN3	1	154842252	Silent	SNP	A	TCGA-OR-A5K9-01A-11D-A29I-10	1608551	154842252	94408369	14	5118										
HCN3	57657	broad.mit.edu	37	chr1	155257913	155257913	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.10188679245283	27	0.00131594018804135	2.23724461158509	2.50494909502262	2.12376118925831	0.0524259106482342	0.532036613272311	15	ccccgctggtgcccgtccgaGctggcccatgggcatccacc	12	19	0	0	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	HCN3-154	NM_020897	exon8	c.G1984T	p.A662S	GTCCGAGCTGGCC	.	114	8	23	1	.	4	4	0	0	0	T	155257913	G	T	155257913	3	4	30	1	0	0	0	0	1	0	0	0	7019	971	34	3	2014	3	HCN3	1	155257913	Missense_Mutation	SNP	G	TCGA-OR-A5K9-01A-11D-A29I-10	415661	155257913	93992708	15	5119										
CCT3	7203	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	156303393	156303393	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.10188679245283	27	0.00131594018804135	2.23724461158509	2.50494909502262	2.12376118925831	0.0524259106482342	0.532036613272311	15	tcttcatcctgggtccggctAatttcgatcatggacttggc	10	11	3	0	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	CCT3-92	NM_005998	exon5	c.T249A	p.I83I	CCGGCTAATTTCG	.	85	26	50	0	.	433	338	94	0	1	T	156303393	A	T	156303393	2	4	30	1	0	0	0	0	0	0	0	1	2960	358	13	5		5	CCT3	1	156303393	Silent	SNP	A	TCGA-OR-A5K9-01A-11D-A29I-10	1045480	156303393	92947228	16	5120										
OLFML2B	25903	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	161954657	161954657	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.10188679245283	27	0.00131594018804135	2.23724461158509	2.50494909502262	2.12376118925831	0.0524259106482342	0.532036613272311	15	gccgtagtaatagttggttaCgtaaatccgctcatccttgg	10	9	1	0	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	OLFML2B-69	NM_015441	exon7	c.G1588A	p.V530I	TGGTTACGTAAAT	.	394	88	298	0	.	3	3	0	0	0	T	161954657	C	T	161954657	3	4	30	1	0	0	0	0	1	0	0	0	10887	536	19	1	672	1	OLFML2B	1	161954657	Missense_Mutation	SNP	C	TCGA-OR-A5K9-01A-11D-A29I-10	5651264	161954657	87295964	17	5121										
SELL	6402	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	169672445	169672445	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.10188679245283	27	0.00131594018804135	2.23724461158509	2.50494909502262	2.12376118925831	0.0524259106482342	0.532036613272311	15	attccagatgattcacaaatGgttttcttcttcccaattaa	4	9	3	2	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	SELL-90	NM_000655	exon6	c.C942G	p.T314T	ACAAATGGTTTTC	.	269	61	144	0	.	0	0	0	0	0	C	169672445	G	C	169672445	2	2	30	1	0	0	0	0	0	0	0	1	14051	1335	47	3		3	SELL	1	169672445	Silent	SNP	G	TCGA-OR-A5K9-01A-11D-A29I-10	7717788	169672445	79578176	18	5122										
FAM163A	148753	broad.mit.edu	37	chr1	179783093	179783094	+	Frame_Shift_Ins	INS	-	-	G													0.10188679245283	27	0.00131594018804135	2.23724461158509	2.50494909502262	2.12376118925831	0.0524259106482342	0.532036613272311	15	gccagccctgtggggtggccINSgcgagccactgcactacctg					novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	FAM163A-91	NM_173509	exon5	c.273_274insG	p.A91fs	GGTGGCCGCGAGC	.	279	12	48	0	.	0	0	0	0	0	G	179783094	-	G	179783093	7	5	30	1	0	1	1	0	0	0	0	0	5492	639	23	0	279	0	FAM163A	1	179783093	Frame_Shift_Ins	INS	-	TCGA-OR-A5K9-01A-11D-A29I-10	10110648	179783093	69467528	19	5123										
CEP350	9857	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	179983496	179983496	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.10188679245283	27	0.00131594018804135	2.23724461158509	2.50494909502262	2.12376118925831	0.0524259106482342	0.532036613272311	15	caagagctctaccggaagcaGaaggaagcctttactaaagt	10	9	1	2	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	CEP350-26	NM_014810	exon10	c.G1908C	p.Q636H	GAAGCAGAAGGAA	.	228	49	139	0	.	4	3	1	0	0	C	179983496	G	C	179983496	3	2	30	1	0	0	0	0	1	0	0	0	3260	933	33	3	1942	3	CEP350	1	179983496	Missense_Mutation	SNP	G	TCGA-OR-A5K9-01A-11D-A29I-10	200403	179983496	69267125	20	5124										
PTGS2	5743	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	186646810	186646810	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.10188679245283	27	0.00131594018804135	2.23724461158509	2.50494909502262	2.12376118925831	0.0524259106482342	0.532036613272311	15	cagcccgttggtgaaagctgGccctcgcttatgatctgtct	11	12	2	2	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	PTGS2-227	NM_000963	exon5	c.C610T	p.P204S	AAGCTGGCCCTCG	.	189	59	82	0	.	0	0	0	0	0	A	186646810	G	A	186646810	3	1	30	1	0	0	0	0	1	0	0	0	12789	1203	42	3	1228	3	PTGS2	1	186646810	Missense_Mutation	SNP	G	TCGA-OR-A5K9-01A-11D-A29I-10	6663314	186646810	62603811	21	5125										
PTPRC	5788	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	198711467	198711467	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.10188679245283	27	0.00131594018804135	2.23724461158509	2.50494909502262	2.12376118925831	0.0524259106482342	0.532036613272311	15	gttatgttgtcaagctaaggCgacagagatgcctgatggtt	13	6	1	2	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	PTPRC-295	NM_002838	exon25	c.C2668A	p.R890R	CTAAGGCGACAGA	.	351	76	232	0	.	0	0	0	0	0	A	198711467	C	A	198711467	2	1	30	1	0	0	0	0	0	0	0	1	12832	760	27	2		2	PTPRC	1	198711467	Silent	SNP	C	TCGA-OR-A5K9-01A-11D-A29I-10	12064657	198711467	50539154	22	5126										
TRAF3IP3	80342	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	209948701	209948701	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.10188679245283	27	0.00131594018804135	2.23724461158509	2.50494909502262	2.12376118925831	0.0524259106482342	0.532036613272311	15	atcaaatttacagaaatactCcccttggggaatgaaaaaag	7	7	1	2	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	TRAF3IP3-291	NM_025228	exon10	c.C782A	p.S261Y	AATACTCCCCTTG	.	334	88	210	2	.	0	0	0	0	0	A	209948701	C	A	209948701	3	1	30	1	0	0	0	0	1	0	0	0	16480	855	30	3	812	3	TRAF3IP3	1	209948701	Missense_Mutation	SNP	C	TCGA-OR-A5K9-01A-11D-A29I-10	11237234	209948701	39301920	23	5127										
DTL	51514	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	212245552	212245552	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.10188679245283	27	0.00131594018804135	2.23724461158509	2.50494909502262	2.12376118925831	0.0524259106482342	0.532036613272311	15	gatgaagctgcctacatatgGaaggtaagttgctaaacttc	10	7	0	1	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	DTL-22	NM_016448	exon11	c.G1032A	p.W344X	CATATGGAAGGTA	.	173	46	122	0	.	0	0	0	0	0	A	212245552	G	A	212245552	4	1	30	1	0	0	0	0	0	1	0	0	4798	1183	41	3	1074	3	DTL	1	212245552	Nonsense_Mutation	SNP	G	TCGA-OR-A5K9-01A-11D-A29I-10	2296851	212245552	37005069	24	5128										
EPRS	2058	ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	220219731	220219731	+	RNA	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.10188679245283	27	0.00131594018804135	2.23724461158509	2.50494909502262	2.12376118925831	0.0524259106482342	0.532036613272311	15	gtcagagagagcgtcgccatCtccaccagtccgctggtcca	11	15	2	2	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	EPRS-92	.	.	.	.	CGCCATCTCCACC	.	300	74	125	0	.	14	9	5	0	0	A	220219731	C	A	220219731	1	1	30	0	1	0	0	0	0	0	0	0	5204	928	32	3		3	EPRS	1	220219731	RNA	SNP	C	TCGA-OR-A5K9-01A-11D-A29I-10	7974179	220219731	29030890	25	5129										
OBSCN	84033	hgsc.bcm.edu	37	chr1	228504670	228504670	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.10188679245283	27	0.00131594018804135	2.23724461158509	2.50494909502262	2.12376118925831	0.0524259106482342	0.532036613272311	15	gcgacgccgtggcctctgcgCggctcaccgtgctgggtggg	18	14	2	0	rs11810627	byfrequency	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	OBSCN-403	NM_001271223	exon62	c.C16417T	p.R5473W	TCTGCGCGGCTCA	.	37	20	0	0	C|0.643;T|0.357	0	0	0	0	0	T	228504670	C	T	228504670	3	4	30	1	0	0	0	0	1	0	0	0	10841	759	27	1	13744	1	OBSCN	1	228504670	Missense_Mutation	SNP	C	TCGA-OR-A5K9-01A-11D-A29I-10	8284939	228504670	20745951	26	5130										
OR2T33	391195	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr1	248437020	248437020	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.10188679245283	27	0.00131594018804135	2.23724461158509	2.50494909502262	2.12376118925831	0.0524259106482342	0.532036613272311	15	gccaaacagggaggtcaaaaCgatactcagaaccatcatga	9	10	3	2	rs138653777		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	OR2T33-114	NM_001004695	exon1	c.G97A	p.V33I	TCAAAACGATACT	.	1014	374	633	2	C|1.000;T|0.000	0	0	0	0	0	T	248437020	C	T	248437020	3	4	30	1	0	0	0	0	1	0	0	0	11053	536	19	1	868	1	OR2T33	1	248437020	Missense_Mutation	SNP	C	TCGA-OR-A5K9-01A-11D-A29I-10	19932350	248437020	813601	27	5131										
TPO	7173	hgsc.bcm.edu	37	chr2	1481231	1481231	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.10188679245283	27	0.00131594018804135	2.23724461158509	2.50494909502262	2.12376118925831	0.0524259106482342	0.532036613272311	15	ggccggagacggccgcgccaGcgaggtcccctccctgacgg	16	17	0	2	rs2175977	byfrequency	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	TPO-332	NM_175719	exon8	c.G1193C	p.S398T	GCGCCAGCGAGGT	.	9	9	0	0	G|0.301;C|0.699	0	0	0	0	0	C	1481231	G	C	1481231	3	2	30	1	0	0	0	0	1	0	0	0	16448	971	34	3	1219	3	TPO	2	1481231	Missense_Mutation	SNP	G	TCGA-OR-A5K9-01A-11D-A29I-10		1481231	241718142	28	5132										
MYT1L	23040	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	1946895	1946895	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.10188679245283	27	0.00131594018804135	2.23724461158509	2.50494909502262	2.12376118925831	0.0524259106482342	0.532036613272311	15	gtccccctcctcgtcctcctCgtcctcatcccctggctcat	5	22	2	0	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	MYT1L-95	NM_015025	exon9	c.G364A	p.E122K	CCTCCTCGTCCTC	.	270	168	135	2	.	0	0	0	0	0	T	1946895	C	T	1946895	3	4	30	1	0	0	0	0	1	0	0	0	10135	893	31	1	3258	1	MYT1L	2	1946895	Missense_Mutation	SNP	C	TCGA-OR-A5K9-01A-11D-A29I-10	465664	1946895	241252478	29	5133										
CMPK2	129607	hgsc.bcm.edu	37	chr2	7005369	7005369	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.10188679245283	27	0.00131594018804135	2.23724461158509	2.50494909502262	2.12376118925831	0.0524259106482342	0.532036613272311	15	tgcgggcgtggtgcctcctgAcaggcgcccagcagctcgag	16	14	0	1	rs11678810		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	CMPK2-68	NM_001256478	exon1	c.T459C	p.C153C	CTCCTGACAGGCG	.	6	6	0	0	A|0.003;G|0.997	1	0	1	0	0	G	7005369	A	G	7005369	2	3	30	1	0	0	0	0	0	0	0	1	3587	273	10	4		4	CMPK2	2	7005369	Silent	SNP	A	TCGA-OR-A5K9-01A-11D-A29I-10	5058474	7005369	236194004	30	5134										
RRM2	6241	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	10263878	10263878	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.10188679245283	27	0.00131594018804135	2.23724461158509	2.50494909502262	2.12376118925831	0.0524259106482342	0.532036613272311	15	ctcaggtggacctctccaagGacattcagcactgggaatcc	10	13	3	0	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	RRM2-227	NM_001165931	exon4	c.G514A	p.D172N	TCCAAGGACATTC	.	77	28	77	0	.	101	67	34	0	0	A	10263878	G	A	10263878	3	1	30	1	0	0	0	0	1	0	0	0	13717	1174	41	3	528	3	RRM2	2	10263878	Missense_Mutation	SNP	G	TCGA-OR-A5K9-01A-11D-A29I-10	3258509	10263878	232935495	31	5135										
ASXL2	55252	broad.mit.edu	37	chr2	25965360	25965360	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.10188679245283	27	0.00131594018804135	2.23724461158509	2.50494909502262	2.12376118925831	0.0524259106482342	0.532036613272311	15	aaaagctcggggctgctacgGattgccttacctctcactgc	10	13	1	0	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	ASXL2-23	NM_018263	exon12	c.C3846G	p.I1282M	GCTACGGATTGCC	.	35	3	47	0	.	1	1	0	0	0	C	25965360	G	C	25965360	3	2	30	1	0	0	0	0	1	0	0	0	1068	1164	41	3	465	3	ASXL2	2	25965360	Missense_Mutation	SNP	G	TCGA-OR-A5K9-01A-11D-A29I-10	15701482	25965360	217234013	32	5136										
USP39	10713	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	85872161	85872161	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.10188679245283	27	0.00131594018804135	2.23724461158509	2.50494909502262	2.12376118925831	0.0524259106482342	0.532036613272311	15	attgccaacatcgtgcatgaCggcaagccctccgagggctc	11	14	0	1	rs145807458		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	USP39-658	NM_001256725	exon11	c.C1518T	p.D506D	GCATGACGGCAAG	.	318	88	198	0	C|1.000;T|0.000	75	54	21	0	0	T	85872161	C	T	85872161	2	4	30	1	0	0	0	0	0	0	0	1	17108	535	19	1		1	USP39	2	85872161	Silent	SNP	C	TCGA-OR-A5K9-01A-11D-A29I-10	59906801	85872161	157327212	33	5137										
CD8B	926	hgsc.bcm.edu	37	chr2	87088964	87088964	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.10188679245283	27	0.00131594018804135	2.23724461158509	2.50494909502262	2.12376118925831	0.0524259106482342	0.532036613272311	15	acctgtcagctgcgcggccaAgaggagccacagccgcggcc	14	16	1	1	rs62146888	byfrequency;by1000genomes	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	CD8B-92	NM_004931	exon1	c.T25C	p.L9L	CGGCCAAGAGGAG	.	8	8	0	0	A|0.476;G|0.524	0	0	0	0	0	G	87088964	A	G	87088964	2	3	30	1	0	0	0	0	0	0	0	1	3051	69	3	4		4	CD8B	2	87088964	Silent	SNP	A	TCGA-OR-A5K9-01A-11D-A29I-10	1216803	87088964	156110409	34	5138										
RANBP2	5903	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	109380404	109380404	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.10188679245283	27	0.00131594018804135	2.23724461158509	2.50494909502262	2.12376118925831	0.0524259106482342	0.532036613272311	15	atatgtttactttccatggtCcagggaaatcagtatttgga	9	6	1	0	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	RANBP2-675	NM_006267	exon20	c.C3409T	p.P1137S	CATGGTCCAGGGA	.	219	64	195	1	.	5	3	2	0	0	T	109380404	C	T	109380404	3	4	30	1	0	0	0	0	1	0	0	0	13063	855	30	3	3487	3	RANBP2	2	109380404	Missense_Mutation	SNP	C	TCGA-OR-A5K9-01A-11D-A29I-10	22291440	109380404	133818969	35	5139										
SMPD4	55627	broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr2	130911319	130911319	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.10188679245283	27	0.00131594018804135	2.23724461158509	2.50494909502262	2.12376118925831	0.0524259106482342	0.532036613272311	15	cagggccttctccaggtattCatctgtcttccggacactgt	9	13	4	0	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	SMPD4-90	NM_017951	exon17	c.G1966A	p.E656K	GGTATTCATCTGT	.	478	104	424	1	.	57	42	15	0	0	T	130911319	C	T	130911319	3	4	30	1	0	0	0	0	1	0	0	0	14842	835	29	3	650	3	SMPD4	2	130911319	Missense_Mutation	SNP	C	TCGA-OR-A5K9-01A-11D-A29I-10	21530915	130911319	112288054	36	5140										
NR4A2	4929	ucsc.edu;bcgsc.ca	37	chr2	157182673	157182673	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.10188679245283	27	0.00131594018804135	2.23724461158509	2.50494909502262	2.12376118925831	0.0524259106482342	0.532036613272311	15	agtactgacctgtgaccataGccagggcagcaatgcaggag	13	10	0	2	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	NR4A2-189	NM_006186	exon7	c.C1529G	p.A510G	ACCATAGCCAGGG	.	205	121	135	2	.	0	0	0	0	0	C	157182673	G	C	157182673	3	2	30	1	0	0	0	0	1	0	0	0	10662	971	34	3	275	3	NR4A2	2	157182673	Missense_Mutation	SNP	G	TCGA-OR-A5K9-01A-11D-A29I-10	26271354	157182673	86016700	37	5141										
SPC25	57405	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	169745769	169745769	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.10188679245283	27	0.00131594018804135	2.23724461158509	2.50494909502262	2.12376118925831	0.0524259106482342	0.532036613272311	15	cagaaacatctcaaccattcGttcttcttcctttaatttca	2	12	4	1	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	SPC25-226	NM_020675	exon3	c.C166A	p.R56R	CCATTCGTTCTTC	.	44	14	49	0	.	18	13	5	0	0	T	169745769	G	T	169745769	2	4	30	1	0	0	0	0	0	0	0	1	15059	1153	40	2		2	SPC25	2	169745769	Silent	SNP	G	TCGA-OR-A5K9-01A-11D-A29I-10	12563096	169745769	73453604	38	5142										
DHRS9	10170	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	169939955	169939955	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.10188679245283	27	0.00131594018804135	2.23724461158509	2.50494909502262	2.12376118925831	0.0524259106482342	0.532036613272311	15	acctgtttggactcatcagtGtgacactaaatatgcttcct	7	10	2	1	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	DHRS9-90	NM_005771	exon6	c.G430A	p.V144M	ATCAGTGTGACAC	.	261	89	185	1	.	0	0	0	0	0	A	169939955	G	A	169939955	3	1	30	1	0	0	0	0	1	0	0	0	4509	1377	48	3	436	3	DHRS9	2	169939955	Missense_Mutation	SNP	G	TCGA-OR-A5K9-01A-11D-A29I-10	194186	169939955	73259418	39	5143										
DNAH7	56171	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	196740469	196740469	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.10188679245283	27	0.00131594018804135	2.23724461158509	2.50494909502262	2.12376118925831	0.0524259106482342	0.532036613272311	15	gaacaatcttttagatcataCcagttccagtggtctaacca	6	10	3	1	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	DNAH7-102	NM_018897	exon38	c.G6216C	p.W2072C	ATCATACCAGTTC	.	241	82	196	1	.	0	0	0	0	0	G	196740469	C	G	196740469	3	3	30	1	0	0	0	0	1	0	0	0	4617	508	18	3	5970	3	DNAH7	2	196740469	Missense_Mutation	SNP	C	TCGA-OR-A5K9-01A-11D-A29I-10	26800514	196740469	46458904	40	5144										
ERBB4	2066	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	212589871	212589871	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.10188679245283	27	0.00131594018804135	2.23724461158509	2.50494909502262	2.12376118925831	0.0524259106482342	0.532036613272311	15	ggcagcagtcactgacgtaaGgtccgtagcatctgccgtca	12	12	3	1	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	ERBB4-1461	NM_001042599	exon6	c.C671T	p.P224L	ACGTAAGGTCCGT	.	490	122	346	0	.	0	0	0	0	0	A	212589871	G	A	212589871	3	1	30	1	0	0	0	0	1	0	0	0	5222	1000	35	3	3347	3	ERBB4	2	212589871	Missense_Mutation	SNP	G	TCGA-OR-A5K9-01A-11D-A29I-10	15849402	212589871	30609502	41	5145										
FARSB	10056	hgsc.bcm.edu	37	chr2	223505606	223505607	+	Frame_Shift_Ins	INS	-	-	TT													0.10188679245283	27	0.00131594018804135	2.23724461158509	2.50494909502262	2.12376118925831	0.0524259106482342	0.532036613272311	15	tgtgataatcaatttctggaINStttttccatcaggcattacc					novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	FARSB-91	NM_005687	exon4	c.314_315insAA	p.I105fs	TTCTGGATTTTTC	.	26	14	48	2	.	0	0	0	0	0	TT	223505607	-	TT	223505606	7	5	30	1	0	1	1	0	0	0	0	0	5699	333	12	0	1511	0	FARSB	2	223505606	Frame_Shift_Ins	INS	-	TCGA-OR-A5K9-01A-11D-A29I-10	10915735	223505606	19693767	42	5146										
MRPL44	65080	bcgsc.ca	37	chr2	224831581	224831581	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.10188679245283	27	0.00131594018804135	2.23724461158509	2.50494909502262	2.12376118925831	0.0524259106482342	0.532036613272311	15	ctgtttgttctctttctagtGataaaaagttgattgcagaa	8	5	2	3	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	MRPL44-90	NM_022915	exon4	c.G829T	p.D277Y	TCTAGTGATAAAA	.	82	5	84	0	.	0	0	0	0	0	T	224831581	G	T	224831581	3	4	30	1	0	0	0	0	1	0	0	0	9836	1304	45	3	843	3	MRPL44	2	224831581	Missense_Mutation	SNP	G	TCGA-OR-A5K9-01A-11D-A29I-10	1325975	224831581	18367792	43	5147										
NGLY1	55768	bcgsc.ca	37	chr3	25777593	25777593	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.10188679245283	27	0.00131594018804135	2.23724461158509	2.50494909502262	2.12376118925831	0.0524259106482342	0.532036613272311	15	atcttcacatgcatcacagtGcagccaccgctgctgagaag	9	13	3	1	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	NGLY1-135	NM_018297	exon7	c.C1051A	p.H351N	CACAGTGCAGCCA	.	128	5	152	0	.	19	19	0	0	0	T	25777593	G	T	25777593	3	4	30	1	0	0	0	0	1	0	0	0	10427	1319	46	3	937	3	NGLY1	3	25777593	Missense_Mutation	SNP	G	TCGA-OR-A5K9-01A-11D-A29I-10		25777593	172244837	44	5148										
VILL	50853	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	38043315	38043315	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.10188679245283	27	0.00131594018804135	2.23724461158509	2.50494909502262	2.12376118925831	0.0524259106482342	0.532036613272311	15	ggcagcgagcccccccacttCctcgccatcttccagggcca	9	20	1	0	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	VILL-90	NM_015873	exon12	c.C1443A	p.F481L	CCACTTCCTCGCC	.	286	112	232	1	.	0	0	0	0	0	A	38043315	C	A	38043315	3	1	30	1	0	0	0	0	1	0	0	0	17203	854	30	3	1489	3	VILL	3	38043315	Missense_Mutation	SNP	C	TCGA-OR-A5K9-01A-11D-A29I-10	12265722	38043315	159979115	45	5149										
CTNNB1	1499	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr3	41266132	41266155	+	In_Frame_Del	DEL	TCCTTCTCTGAGTGGTAAAGGCAA	TCCTTCTCTGAGTGGTAAAGGCAA	-													0.10188679245283	27	0.00131594018804135	2.23724461158509	2.50494909502262	2.12376118925831	0.0524259106482342	0.532036613272311	15	tctggtgccactaccacagcTccttctctgagtggtaaagg					novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	TCCTTCTCTGAGTGGTAAAGGCAA	TCCTTCTCTGAGTGGTAAAGGCAA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	CTNNB1-24361	NM_001098209	exon3	c.129_152del	p.43_51del	CACAGCTCCTTCT	.	113	15	173	0	.	0	0	0	0	0	-	41266155	TCCTTCTCTGAGTGGTAAAGGCAA	-	41266132	7	5	30	1	0	1	0	1	0	0	0	0	4022	1538	54	0	135	0	CTNNB1	3	41266132	In_Frame_Del	DEL	TCCTTCTCTGAGTGGTAAAGGCAA	TCGA-OR-A5K9-01A-11D-A29I-10	3222817	41266132	156756298	46	5150										
FYCO1	79443	bcgsc.ca	37	chr3	46007825	46007825	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.10188679245283	27	0.00131594018804135	2.23724461158509	2.50494909502262	2.12376118925831	0.0524259106482342	0.532036613272311	15	cagctggaacttgagggtgtTgagctcctggtgtgcagcct	15	9	0	2	rs71622515	alternate_allele	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	FYCO1-91	NM_024513	exon8	c.A3001G	p.N1001D	GGGTGTTGAGCTC	.	149	7	91	1	GTT|0.500;TTC|0.500	0	0	0	0	0	C	46007825	T	C	46007825	3	2	30	1	0	0	0	0	1	0	0	0	6144	1812	63	4	1479	4	FYCO1	3	46007825	Missense_Mutation	SNP	T	TCGA-OR-A5K9-01A-11D-A29I-10	4741693	46007825	152014605	47	5151										
SETD2	29072	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr3	47139519	47139519	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.10188679245283	27	0.00131594018804135	2.23724461158509	2.50494909502262	2.12376118925831	0.0524259106482342	0.532036613272311	15	gctgactctgttttctcctcCcaggtaaccccggcaattgg	9	14	2	1	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	SETD2-1273	NM_014159	exon9	c.G5068C	p.G1690R	CTCCTCCCAGGTA	.	36	4	54	0	.	11	10	1	0	0	G	47139519	C	G	47139519	3	3	30	1	0	0	0	0	1	0	0	0	14166	632	22	3	2678	3	SETD2	3	47139519	Missense_Mutation	SNP	C	TCGA-OR-A5K9-01A-11D-A29I-10	1131694	47139519	150882911	48	5152										
PDZRN3	23024	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	73437153	73437153	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.10188679245283	27	0.00131594018804135	2.23724461158509	2.50494909502262	2.12376118925831	0.0524259106482342	0.532036613272311	15	ttgcaatcagcaatgaaaagTttttattttcttcactggtt	6	6	3	1	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	PDZRN3-232	NM_015009	exon8	c.A1484G	p.N495S	GAAAAGTTTTTAT	.	14	6	23	0	.	8	5	3	0	0	C	73437153	T	C	73437153	3	2	30	1	0	0	0	0	1	0	0	0	11738	1725	60	4	1728	4	PDZRN3	3	73437153	Missense_Mutation	SNP	T	TCGA-OR-A5K9-01A-11D-A29I-10	26297634	73437153	124585277	49	5153										
ZPLD1	131368	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	102171934	102171934	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.10188679245283	27	0.00131594018804135	2.23724461158509	2.50494909502262	2.12376118925831	0.0524259106482342	0.532036613272311	15	cacctttccagcagtggtcaTttttatcatcaatctcagca	5	12	4	0	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	ZPLD1-72	NM_175056	exon3	c.T326C	p.I109T	TGGTCATTTTTAT	.	109	54	110	0	.	0	0	0	0	0	C	102171934	T	C	102171934	3	2	30	1	0	0	0	0	1	0	0	0	18258	1493	52	4	336	4	ZPLD1	3	102171934	Missense_Mutation	SNP	T	TCGA-OR-A5K9-01A-11D-A29I-10	28734781	102171934	95850496	50	5154										
HEG1	57493	bcgsc.ca	37	chr3	124692689	124692689	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.10188679245283	27	0.00131594018804135	2.23724461158509	2.50494909502262	2.12376118925831	0.0524259106482342	0.532036613272311	15	tttttggggtattcagcataCggggacatttggaaatctcc	11	7	2	0	rs2270778	byfrequency	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	HEG1-70	NM_020733	exon16	c.G3882A	p.P1294P	AGCATACGGGGAC	.	60	6	60	0	C|0.292;T|0.708	6	6	0	0	0	T	124692689	C	T	124692689	2	4	30	1	0	0	0	0	0	0	0	1	7065	523	19	1		1	HEG1	3	124692689	Silent	SNP	C	TCGA-OR-A5K9-01A-11D-A29I-10	22520755	124692689	73329741	51	5155										
BCHE	590	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	165548281	165548281	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.10188679245283	27	0.00131594018804135	2.23724461158509	2.50494909502262	2.12376118925831	0.0524259106482342	0.532036613272311	15	atttcctggcaaagctaagaAtcctagggcacccaccctat	7	13	0	1	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	BCHE-94	NM_000055	exon2	c.T541C	p.F181L	CTAAGAATCCTAG	.	65	36	84	0	.	16	16	0	0	0	G	165548281	A	G	165548281	3	3	30	1	0	0	0	0	1	0	0	0	1359	101	4	4	1279	4	BCHE	3	165548281	Missense_Mutation	SNP	A	TCGA-OR-A5K9-01A-11D-A29I-10	40855592	165548281	32474149	52	5156										
ZNF639	51193	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	179051848	179051848	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.10188679245283	27	0.00131594018804135	2.23724461158509	2.50494909502262	2.12376118925831	0.0524259106482342	0.532036613272311	15	atagcctcttaagcaaaattAcctttgacaaatgtaaaaac	4	8	1	1	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	ZNF639-90	NM_016331	exon7	c.A1096G	p.T366A	AAAATTACCTTTG	.	139	62	231	0	.	15	13	2	0	0	G	179051848	A	G	179051848	3	3	30	1	0	0	0	0	1	0	0	0	18093	391	14	4	1110	4	ZNF639	3	179051848	Missense_Mutation	SNP	A	TCGA-OR-A5K9-01A-11D-A29I-10	13503567	179051848	18970582	53	5157										
MAP3K13	9175	broad.mit.edu	37	chr3	185190907	185190907	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.10188679245283	27	0.00131594018804135	2.23724461158509	2.50494909502262	2.12376118925831	0.0524259106482342	0.532036613272311	15	caccgccgagggaatagcagAggcagccatagtgactttgc	13	11	0	2	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	MAP3K13-548	NM_004721	exon11	c.A1788T	p.R596S	TAGCAGAGGCAGC	.	106	4	129	0	.	6	6	0	0	0	T	185190907	A	T	185190907	3	4	30	1	0	0	0	0	1	0	0	0	9275	301	11	5	1826	5	MAP3K13	3	185190907	Missense_Mutation	SNP	A	TCGA-OR-A5K9-01A-11D-A29I-10	6139059	185190907	12831523	54	5158										
ATP13A4	84239	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	193174877	193174877	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.10188679245283	27	0.00131594018804135	2.23724461158509	2.50494909502262	2.12376118925831	0.0524259106482342	0.532036613272311	15	cccatctcttggacaatgacTgtcattctttgcagtgccga	8	12	3	1	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	ATP13A4-92	NM_032279	exon16	c.A1827G	p.T609T	AATGACTGTCATT	.	161	76	161	0	.	0	0	0	0	0	C	193174877	T	C	193174877	2	2	30	1	0	0	0	0	0	0	0	1	1127	1567	55	4		4	ATP13A4	3	193174877	Silent	SNP	T	TCGA-OR-A5K9-01A-11D-A29I-10	7983970	193174877	4847553	55	5159										
MUC4	4585	bcgsc.ca	37	chr3	195511379	195511379	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.10188679245283	27	0.00131594018804135	2.23724461158509	2.50494909502262	2.12376118925831	0.0524259106482342	0.532036613272311	15	acctgtggatactgaggaagCgtcggtgacatgaagagggg	17	6	0	4	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	MUC4-90	NM_018406	exon2	c.G7072A	p.A2358T	AGGAAGCGTCGGT	.	420	140	357	4	.	0	0	0	0	0	T	195511379	C	T	195511379	3	4	30	1	0	0	0	0	1	0	0	0	10006	768	27	1		1	MUC4	3	195511379	Missense_Mutation	SNP	C	TCGA-OR-A5K9-01A-11D-A29I-10	2336502	195511379	2511051	56	5160										
IDUA	3425	broad.mit.edu	37	chr4	996204	996204	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.10188679245283	27	0.00131594018804135	2.23724461158509	2.50494909502262	2.12376118925831	0.0524259106482342	0.532036613272311	15	cgcgcttccaggtcaacaacAcccgcccgccgcacgtgcag	10	19	1	0	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	IDUA-91	NM_000203	exon8	c.A1120C	p.T374P	AACAACACCCGCC	.	386	114	75	5	.	9	8	1	0	0	C	996204	A	C	996204	3	2	30	1	0	0	0	0	1	0	0	0	7525	159	6	5	1150	5	IDUA	4	996204	Missense_Mutation	SNP	A	TCGA-OR-A5K9-01A-11D-A29I-10		996204	190158072	57	5161										
CRIPAK	285464	hgsc.bcm.edu	37	chr4	1388867	1388867	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.10188679245283	27	0.00131594018804135	2.23724461158509	2.50494909502262	2.12376118925831	0.0524259106482342	0.532036613272311	15	caacgtggagtgcccgcctgAtcacacgtgcccatgtggag	13	13	1	1	rs76058011	byfrequency	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	CRIPAK-90	NM_175918	exon1	c.A568C	p.I190L	CGCCTGATCACAC	.	383	28	44	0	A|0.994;C|0.006	76	6	70	0	0	C	1388867	A	C	1388867	3	2	30	1	0	0	0	0	1	0	0	0	3883	333	12	5	570	5	CRIPAK	4	1388867	Missense_Mutation	SNP	A	TCGA-OR-A5K9-01A-11D-A29I-10	392663	1388867	189765409	58	5162										
MSX1	4487	hgsc.bcm.edu	37	chr4	4861745	4861745	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.10188679245283	27	0.00131594018804135	2.23724461158509	2.50494909502262	2.12376118925831	0.0524259106482342	0.532036613272311	15	cagcgccgccgcggccacggCagccgccatgggcgcggacg	17	18	0	0	rs36059701		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	MSX1-90	NM_002448	exon1	c.C119G	p.A40G	CCACGGCAGCCGC	.	12	4	0	0	C|0.867;G|0.133	1	0	1	0	0	G	4861745	C	G	4861745	3	3	30	1	0	0	0	0	1	0	0	0	9923	710	25	3	121	3	MSX1	4	4861745	Missense_Mutation	SNP	C	TCGA-OR-A5K9-01A-11D-A29I-10	3472878	4861745	186292531	59	5163										
ZAR1	326340	hgsc.bcm.edu	37	chr4	48492769	48492769	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.10188679245283	27	0.00131594018804135	2.23724461158509	2.50494909502262	2.12376118925831	0.0524259106482342	0.532036613272311	15	tggcggctctttctcccagcAgccatcccgtcgaggcctgg	12	16	2	0	rs74929644		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	ZAR1-90	NM_175619	exon1	c.A461T	p.Q154L	CCCAGCAGCCATC	.	6	4	0	0	A|0.552;T|0.448	0	0	0	0	0	T	48492769	A	T	48492769	3	4	30	1	0	0	0	0	1	0	0	0	17553	188	7	5	463	5	ZAR1	4	48492769	Missense_Mutation	SNP	A	TCGA-OR-A5K9-01A-11D-A29I-10	43631024	48492769	142661507	60	5164										
UGT2A3	79799	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	69817434	69817435	+	Missense_Mutation	DNP	GA	GA	CT													0.10188679245283	27	0.00131594018804135	2.23724461158509	2.50494909502262	2.12376118925831	0.0524259106482342	0.532036613272311	15	aatccacagccaacacagaaGagctgcaggagcagaaatac					novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	GA	GA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	UGT2A3-92	NM_024743	exon1	c.T44A	p.L15Q	CAGAAGAGCTGCA	.	91	0	59	0	.	0	0	0	0	0	CT	69817435	GA	CT	69817434	3	2	30	1	0	0	0	0	1	0	0	0	16993	929	33	3	1562	3	UGT2A3	4	69817434	Missense_Mutation	DNP	GA	TCGA-OR-A5K9-01A-11D-A29I-10	21324665	69817434	121336842	61	5165										
UGT2B28	54490	broad.mit.edu	37	chr4	70156400	70156400	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.10188679245283	27	0.00131594018804135	2.23724461158509	2.50494909502262	2.12376118925831	0.0524259106482342	0.532036613272311	15	gatccctatggtaggcattcCattgttttgggatcaacctg	10	9	1	0	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	UGT2B28-91	NM_053039	exon5	c.C1181A	p.P394Q	GCATTCCATTGTT	.	816	18	625	1	.	0	0	0	0	0	A	70156400	C	A	70156400	3	1	30	1	0	0	0	0	1	0	0	0	16998	594	21	3	1199	3	UGT2B28	4	70156400	Missense_Mutation	SNP	C	TCGA-OR-A5K9-01A-11D-A29I-10	338966	70156400	120997876	62	5166										
DSPP	1834	bcgsc.ca	37	chr4	88537171	88537171	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.10188679245283	27	0.00131594018804135	2.23724461158509	2.50494909502262	2.12376118925831	0.0524259106482342	0.532036613272311	15	gatagcagtgacagcagtgaCagcagcaatagcagtgacag	13	8	0	3	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	DSPP-90	NM_014208	exon5	c.C3357T	p.D1119D	CAGTGACAGCAGC	.	1051	32	641	7	.	0	0	0	0	0	T	88537171	C	T	88537171	2	4	30	1	0	0	0	0	0	0	0	1	4793	477	17	3		3	DSPP	4	88537171	Silent	SNP	C	TCGA-OR-A5K9-01A-11D-A29I-10	18380771	88537171	102617105	63	5167			1	29		4	3	52	N	T_C	9.340478e-08
DSPP	1834	bcgsc.ca	37	chr4	88537186	88537186	+	Silent	SNP	T	T	C													0.10188679245283	27	0.00131594018804135	2.23724461158509	2.50494909502262	2.12376118925831	0.0524259106482342	0.532036613272311	15	agtgacagcagcaatagcagTgacagcagtgacagcagcga					novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	DSPP-90	NM_014208	exon5	c.T3372C	p.S1124S	TAGCAGTGACAGC	.	1046	78	647	16	.	0	0	0	0	0	C	88537186	T	C	88537186	2	2	30	1	0	0	0	0	0	0	0	1	4793	1693	59	4		4	DSPP	4	88537186	Silent	SNP	T	TCGA-OR-A5K9-01A-11D-A29I-10	15	88537186	102617090	64	5168	42	2	1	29		4	3	52	N	T_C	9.340478e-08
DSPP	1834	bcgsc.ca	37	chr4	88537195	88537195	+	Silent	SNP	T	T	C													0.10188679245283	27	0.00131594018804135	2.23724461158509	2.50494909502262	2.12376118925831	0.0524259106482342	0.532036613272311	15	agcaatagcagtgacagcagTgacagcagcgacagcagtga					novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	DSPP-90	NM_014208	exon5	c.T3381C	p.S1127S	CAGCAGTGACAGC	.	1014	68	636	18	.	0	0	0	0	0	C	88537195	T	C	88537195	2	2	30	1	0	0	0	0	0	0	0	1	4793	1693	59	4		4	DSPP	4	88537195	Silent	SNP	T	TCGA-OR-A5K9-01A-11D-A29I-10	9	88537195	102617081	65	5169	42	2	1	29		4	3	52	N	T_C	9.340478e-08
DSPP	1834	bcgsc.ca	37	chr4	88537222	88537222	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.10188679245283	27	0.00131594018804135	2.23724461158509	2.50494909502262	2.12376118925831	0.0524259106482342	0.532036613272311	15	agcgacagcagtgatagcagTgacagcagcaacagcagtga	13	9	0	3	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	DSPP-90	NM_014208	exon5	c.T3408C	p.S1136S	TAGCAGTGACAGC	.	1121	36	730	5	.	0	0	0	0	0	C	88537222	T	C	88537222	2	2	30	1	0	0	0	0	0	0	0	1	4793	1693	59	4		4	DSPP	4	88537222	Silent	SNP	T	TCGA-OR-A5K9-01A-11D-A29I-10	27	88537222	102617054	66	5170			1	29		4	3	52	N	T_C	9.340478e-08
C4orf32	132720	hgsc.bcm.edu	37	chr4	113066831	113066831	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.10188679245283	27	0.00131594018804135	2.23724461158509	2.50494909502262	2.12376118925831	0.0524259106482342	0.532036613272311	15	gcgggaggcggcagggaccgGgtgggatcccggggcgagcc	23	11	0	0	rs10002700		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	C4orf32-90	NM_152400	exon1	c.G95A	p.G32E	GGACCGGGTGGGA	.	4	4	0	0	G|0.022;A|0.978	6	0	6	0	0	A	113066831	G	A	113066831	3	1	30	1	0	0	0	0	1	0	0	0	2268	1232	43	3	97	3	C4orf32	4	113066831	Missense_Mutation	SNP	G	TCGA-OR-A5K9-01A-11D-A29I-10	24529609	113066831	78087445	67	5171										
FGF2	2247	hgsc.bcm.edu	37	chr4	123748086	123748086	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.10188679245283	27	0.00131594018804135	2.23724461158509	2.50494909502262	2.12376118925831	0.0524259106482342	0.532036613272311	15	cgtccgcggagacacccatcCgtgaaccccaggtcccgggc	12	18	0	2	rs1449683	byfrequency	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	FGF2-659	NM_002006	exon1	c.C156T	p.S52S	CCCATCCGTGAAC	.	19	16	0	0	C|0.833;T|0.167	0	0	0	0	0	T	123748086	C	T	123748086	2	4	30	1	0	0	0	0	0	0	0	1	5867	639	23	1		1	FGF2	4	123748086	Silent	SNP	C	TCGA-OR-A5K9-01A-11D-A29I-10	10681255	123748086	67406190	68	5172										
FAT4	79633	broad.mit.edu;bcgsc.ca	37	chr4	126240715	126240715	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.10188679245283	27	0.00131594018804135	2.23724461158509	2.50494909502262	2.12376118925831	0.0524259106482342	0.532036613272311	15	ttttggcatattcccagatgGtcaattgtatataaaaagtg	8	5	1	1	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	FAT4-108	NM_024582	exon1	c.G3149T	p.G1050V	CAGATGGTCAATT	.	206	8	236	0	.	0	0	0	0	0	T	126240715	G	T	126240715	3	4	30	1	0	0	0	0	1	0	0	0	5711	1261	44	3	3151	3	FAT4	4	126240715	Missense_Mutation	SNP	G	TCGA-OR-A5K9-01A-11D-A29I-10	2492629	126240715	64913561	69	5173										
FAT4	79633	broad.mit.edu	37	chr4	126241103	126241103	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.10188679245283	27	0.00131594018804135	2.23724461158509	2.50494909502262	2.12376118925831	0.0524259106482342	0.532036613272311	15	gctgtgtttagctttacagtCatagcaacagatcaggggat	11	7	2	1	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	FAT4-108	NM_024582	exon1	c.C3537T	p.V1179V	TACAGTCATAGCA	.	21	5	32	0	.	0	0	0	0	0	T	126241103	C	T	126241103	2	4	30	1	0	0	0	0	0	0	0	1	5711	813	29	3		3	FAT4	4	126241103	Silent	SNP	C	TCGA-OR-A5K9-01A-11D-A29I-10	388	126241103	64913173	70	5174										
LRBA	987	bcgsc.ca	37	chr4	151793903	151793903	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.10188679245283	27	0.00131594018804135	2.23724461158509	2.50494909502262	2.12376118925831	0.0524259106482342	0.532036613272311	15	cgatgccagaagtttgtagaTaacactgaatgaataaaaat	8	5	0	4	rs72719663	byfrequency	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	LRBA-157	NM_006726	exon18	c.A2170G	p.I724V	TGTAGATAACACT	.	94	5	88	0	T|0.983;C|0.017	0	0	0	0	0	C	151793903	T	C	151793903	3	2	30	1	0	0	0	0	1	0	0	0	8958	1406	49	4	6585	4	LRBA	4	151793903	Missense_Mutation	SNP	T	TCGA-OR-A5K9-01A-11D-A29I-10	25552800	151793903	39360373	71	5175										
LRRC14B	389257	hgsc.bcm.edu	37	chr5	191992	191992	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.10188679245283	27	0.00131594018804135	2.23724461158509	2.50494909502262	2.12376118925831	0.0524259106482342	0.532036613272311	15	ctgcgggtggctgacctcacGggcatccgagatgtgcaggt	16	11	1	2	rs34710524	byfrequency	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	LRRC14B-69	NM_001080478	exon1	c.G339A	p.T113T	CCTCACGGGCATC	.	21	20	0	0	G|0.975;A|0.025	0	0	0	0	0	A	191992	G	A	191992	2	1	30	1	0	0	0	0	0	0	0	1	8996	1103	39	1		1	LRRC14B	5	191992	Silent	SNP	G	TCGA-OR-A5K9-01A-11D-A29I-10		191992	180723268	72	5176										
ZDHHC11	79844	bcgsc.ca	37	chr5	801252	801252	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.10188679245283	27	0.00131594018804135	2.23724461158509	2.50494909502262	2.12376118925831	0.0524259106482342	0.532036613272311	15	ctttcagcactgtcagttttCatgggctctgttgtttcttg	9	9	5	0	rs142091140	byfrequency	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	ZDHHC11-92	NM_024786	exon12	c.G1209A	p.M403I	AGTTTTCATGGGC	.	237	18	83	1	C|0.999;T|0.001	3	3	0	0	0	T	801252	C	T	801252	3	4	30	1	0	0	0	0	1	0	0	0	17638	826	29	3	33	3	ZDHHC11	5	801252	Missense_Mutation	SNP	C	TCGA-OR-A5K9-01A-11D-A29I-10	609260	801252	180114008	73	5177										
ADAMTS16	170690	hgsc.bcm.edu	37	chr5	5140632	5140632	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.10188679245283	27	0.00131594018804135	2.23724461158509	2.50494909502262	2.12376118925831	0.0524259106482342	0.532036613272311	15	tggcggcgctgtggatgctgTtggcgcaggtggccgagcag	20	9	0	0	rs270208	byfrequency	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	ADAMTS16-275	NM_139056	exon1	c.T52C	p.L18L	ATGCTGTTGGCGC	.	5	5	1	0	T|0.352;C|0.648	0	0	0	0	0	C	5140632	T	C	5140632	2	2	30	1	0	0	0	0	0	0	0	1	261	1722	60	4		4	ADAMTS16	5	5140632	Silent	SNP	T	TCGA-OR-A5K9-01A-11D-A29I-10	4339380	5140632	175774628	74	5178										
TRIO	7204	bcgsc.ca	37	chr5	14420027	14420027	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.10188679245283	27	0.00131594018804135	2.23724461158509	2.50494909502262	2.12376118925831	0.0524259106482342	0.532036613272311	15	gactggtgtctggtgcggacAactgaccgctccccagcggc	14	14	1	1	rs30612	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	TRIO-562	NM_007118	exon34	c.A5100C	p.T1700T	GCGGACAACTGAC	.	326	8	303	2	A|0.129;C|0.871	3	3	0	0	0	C	14420027	A	C	14420027	2	2	30	1	0	0	0	0	0	0	0	1	16590	117	5	5		5	TRIO	5	14420027	Silent	SNP	A	TCGA-OR-A5K9-01A-11D-A29I-10	9279395	14420027	166495233	75	5179										
C7	730	broad.mit.edu;ucsc.edu	37	chr5	40959605	40959605	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.10188679245283	27	0.00131594018804135	2.23724461158509	2.50494909502262	2.12376118925831	0.0524259106482342	0.532036613272311	15	ttggagcccctgtgtccaagGgaagaaaacaagaagccgtg	13	9	0	2	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	C7-22	NM_000587	exon12	c.G1544A	p.G515E	TCCAAGGGAAGAA	.	190	32	111	2	.	238	160	78	0	0	A	40959605	G	A	40959605	3	1	30	1	0	0	0	0	1	0	0	0	2381	1232	43	3	1590	3	C7	5	40959605	Missense_Mutation	SNP	G	TCGA-OR-A5K9-01A-11D-A29I-10	26539578	40959605	139955655	76	5180										
GPR98	84059	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	89986640	89986640	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.10188679245283	27	0.00131594018804135	2.23724461158509	2.50494909502262	2.12376118925831	0.0524259106482342	0.532036613272311	15	agattactaaacttattgtaGaggaacctgagtttaactca	7	6	1	3	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	GPR98-103	NM_032119	exon31	c.G6733T	p.E2245X	ATTGTAGAGGAAC	.	126	41	98	0	.	0	0	0	0	0	T	89986640	G	T	89986640	4	4	30	1	0	0	0	0	0	1	0	0	6742	943	33	3	6855	3	GPR98	5	89986640	Nonsense_Mutation	SNP	G	TCGA-OR-A5K9-01A-11D-A29I-10	49027035	89986640	90928620	77	5181										
SLC23A1	9963	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	138714364	138714364	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.10188679245283	27	0.00131594018804135	2.23724461158509	2.50494909502262	2.12376118925831	0.0524259106482342	0.532036613272311	15	atgcagcaaatgccttcggtGaagatgcccctgtaaggaaa	11	9	0	2	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	SLC23A1-90	NM_152685	exon10	c.C1095T	p.F365F	TTCGGTGAAGATG	.	239	24	157	0	.	0	0	0	0	0	A	138714364	G	A	138714364	2	1	30	1	0	0	0	0	0	0	0	1	14497	1281	45	3		3	SLC23A1	5	138714364	Silent	SNP	G	TCGA-OR-A5K9-01A-11D-A29I-10	48727724	138714364	42200896	78	5182										
NRG2	9542	hgsc.bcm.edu	37	chr5	139422602	139422602	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.10188679245283	27	0.00131594018804135	2.23724461158509	2.50494909502262	2.12376118925831	0.0524259106482342	0.532036613272311	15	tgtcgctgtagctgctgcacCgacccttctccagtggcggc	12	15	1	0	rs188534354		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	NRG2-526	NM_013982	exon1	c.G53A	p.R18Q	CTGCACCGACCCT	.	22	14	1	0	C|0.993;T|0.007	8	2	6	0	0	T	139422602	C	T	139422602	3	4	30	1	0	0	0	0	1	0	0	0	10677	652	23	1	2630	1	NRG2	5	139422602	Missense_Mutation	SNP	C	TCGA-OR-A5K9-01A-11D-A29I-10	708238	139422602	41492658	79	5183										
PCDHGA4	56111	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr5	140737208	140737208	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.10188679245283	27	0.00131594018804135	2.23724461158509	2.50494909502262	2.12376118925831	0.0524259106482342	0.532036613272311	15	ggtgagtcaatcttataataGatcataccacactgaaatat	6	7	3	3	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	.	NM_032053	exon1	c.G2441A	p.R814K	ATAATAGATCATA	.	103	17	125	0	.	0	0	0	0	0	A	140737208	G	A	140737208	3	1	30	1	0	0	0	0	1	0	0	0	11585	942	33	3	2443	3	PCDHGA4	5	140737208	Missense_Mutation	SNP	G	TCGA-OR-A5K9-01A-11D-A29I-10	1314606	140737208	40178052	80	5184										
SLC26A2	1836	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	149360104	149360104	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.10188679245283	27	0.00131594018804135	2.23724461158509	2.50494909502262	2.12376118925831	0.0524259106482342	0.532036613272311	15	ttgtgccttttggttcttttGccaaccaaagaactcaatga	7	9	2	2	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	SLC26A2-90	NM_000112	exon3	c.G948C	p.L316F	TCTTTTGCCAACC	.	108	48	83	0	.	15	8	7	0	0	C	149360104	G	C	149360104	3	2	30	1	0	0	0	0	1	0	0	0	14552	1310	46	3	954	3	SLC26A2	5	149360104	Missense_Mutation	SNP	G	TCGA-OR-A5K9-01A-11D-A29I-10	8622896	149360104	31555156	81	5185										
HIST1H3H	8357	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	27777856	27777856	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.10188679245283	27	0.00131594018804135	2.23724461158509	2.50494909502262	2.12376118925831	0.0524259106482342	0.532036613272311	15	atctagctctgaaggcatggCgcgtacgaagcagactgctc	12	11	2	2	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	HIST1H3H-45	NM_003536	exon1	c.C5G	p.A2G	GCATGGCGCGTAC	.	240	52	80	0	.	3	3	0	0	0	G	27777856	C	G	27777856	3	3	30	1	0	0	0	0	1	0	0	0	7183	768	27	2	7	2	HIST1H3H	6	27777856	Missense_Mutation	SNP	C	TCGA-OR-A5K9-01A-11D-A29I-10		27777856	143337211	82	5186										
ABCF1	23	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	30557635	30557635	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.10188679245283	27	0.00131594018804135	2.23724461158509	2.50494909502262	2.12376118925831	0.0524259106482342	0.532036613272311	15	gcagctgcgcatggaggagaCgcccactgagtacctgcagc	14	13	0	2	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	ABCF1-92	NM_001025091	exon22	c.C2117T	p.T706M	AGGAGACGCCCAC	.	154	47	118	1	.	61	30	31	0	0	T	30557635	C	T	30557635	3	4	30	1	0	0	0	0	1	0	0	0	65	536	19	1	2203	1	ABCF1	6	30557635	Missense_Mutation	SNP	C	TCGA-OR-A5K9-01A-11D-A29I-10	2779779	30557635	140557432	83	5187										
TNXB	7148	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	32023746	32023746	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.10188679245283	27	0.00131594018804135	2.23724461158509	2.50494909502262	2.12376118925831	0.0524259106482342	0.532036613272311	15	gtgacctcgctctcctcgccCctgacacgcatcacctgggg	10	18	2	2	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	TNXB-90	NM_019105	exon24	c.G8349T	p.R2783S	CTCGCCCCTGACA	.	384	116	104	2	.	0	0	0	0	0	A	32023746	C	A	32023746	3	1	30	1	0	0	0	0	1	0	0	0	16383	622	22	3	6448	3	TNXB	6	32023746	Missense_Mutation	SNP	C	TCGA-OR-A5K9-01A-11D-A29I-10	1466111	32023746	139091321	84	5188										
NOTCH4	4855	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	32166298	32166298	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.10188679245283	27	0.00131594018804135	2.23724461158509	2.50494909502262	2.12376118925831	0.0524259106482342	0.532036613272311	15	ccacagccaccactcagagaCcagagctggcacgtggaggg	13	14	1	2	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	NOTCH4-1321	NM_004557	exon26	c.G4656T	p.W1552C	CAGAGACCAGAGC	.	132	31	93	2	.	5	5	0	0	0	A	32166298	C	A	32166298	3	1	30	1	0	0	0	0	1	0	0	0	10580	508	18	3	1375	3	NOTCH4	6	32166298	Missense_Mutation	SNP	C	TCGA-OR-A5K9-01A-11D-A29I-10	142552	32166298	138948769	85	5189										
CUTA	51596	broad.mit.edu;bcgsc.ca	37	chr6	33385930	33385930	+	Silent	SNP	G	G	A													0.10188679245283	27	0.00131594018804135	2.23724461158509	2.50494909502262	2.12376118925831	0.0524259106482342	0.532036613272311	15	gtagaagaaggaccacctgcGcctccagagccagccaatcc					novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	CUTA-90	NM_001014433	exon1	c.C33T	p.G11G	ACCTGCGCCTCCA	.	227	19	137	2	.	12	9	0	1	2	A	33385930	G	A	33385930	2	1	30	1	0	0	0	0	0	0	0	1	4068	1074	38	1		1	CUTA	6	33385930	Silent	SNP	G	TCGA-OR-A5K9-01A-11D-A29I-10	1219632	33385930	137729137	86	5190	43	2								
CUTA	51596	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr6	33385931	33385931	+	Missense_Mutation	SNP	C	C	G													0.10188679245283	27	0.00131594018804135	2.23724461158509	2.50494909502262	2.12376118925831	0.0524259106482342	0.532036613272311	15	tagaagaaggaccacctgcgCctccagagccagccaatccc					novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	CUTA-90	NM_001014433	exon1	c.G32C	p.G11A	CCTGCGCCTCCAG	.	225	18	138	0	.	7	7	0	0	0	G	33385931	C	G	33385931	3	3	30	1	0	0	0	0	1	0	0	0	4068	739	26	3	634	3	CUTA	6	33385931	Missense_Mutation	SNP	C	TCGA-OR-A5K9-01A-11D-A29I-10	1	33385931	137729136	87	5191	43	2								
PPARD	5467	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	35388052	35388052	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.10188679245283	27	0.00131594018804135	2.23724461158509	2.50494909502262	2.12376118925831	0.0524259106482342	0.532036613272311	15	ggtgttcatgcatgtgagggGtgcaaggtacggactggggg	20	5	1	1	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	PPARD-187	NM_001171818	exon5	c.G279T	p.G93G	TGAGGGGTGCAAG	.	91	42	54	0	.	0	0	0	0	0	T	35388052	G	T	35388052	2	4	30	1	0	0	0	0	0	0	0	1	12327	1248	44	3		3	PPARD	6	35388052	Silent	SNP	G	TCGA-OR-A5K9-01A-11D-A29I-10	2002121	35388052	135727015	88	5192										
KCNK16	83795	bcgsc.ca	37	chr6	39282806	39282806	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.10188679245283	27	0.00131594018804135	2.23724461158509	2.50494909502262	2.12376118925831	0.0524259106482342	0.532036613272311	15	ccagtcctttcttggatatgGggaagtcctggggtgtgact	14	8	1	1	rs11756091	byfrequency	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	KCNK16-229	NM_032115	exon6	c.C902A	p.P301H	GATATGGGGAAGT	.	170	7	146	0	G|0.400;T|0.600	0	0	0	0	0	T	39282806	G	T	39282806	3	4	30	1	0	0	0	0	1	0	0	0	8084	1232	43	3	31	3	KCNK16	6	39282806	Missense_Mutation	SNP	G	TCGA-OR-A5K9-01A-11D-A29I-10	3894754	39282806	131832261	89	5193										
UNC5CL	222643	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	41002645	41002645	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.10188679245283	27	0.00131594018804135	2.23724461158509	2.50494909502262	2.12376118925831	0.0524259106482342	0.532036613272311	15	ctcattttctagttggggggTaggctgggacactggttcct	14	8	2	0	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	UNC5CL-92	NM_173561	exon2	c.A169C	p.T57P	GGGGGGTAGGCTG	.	121	30	83	2	.	1	1	0	0	0	G	41002645	T	G	41002645	3	3	30	1	0	0	0	0	1	0	0	0	17032	1638	57	5	1419	5	UNC5CL	6	41002645	Missense_Mutation	SNP	T	TCGA-OR-A5K9-01A-11D-A29I-10	1719839	41002645	130112422	90	5194										
RCAN2	10231	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr6	46214635	46214635	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.10188679245283	27	0.00131594018804135	2.23724461158509	2.50494909502262	2.12376118925831	0.0524259106482342	0.532036613272311	15	agccaagtgcagtttgtctcCatctgtctctggagtctgaa	10	10	4	1	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	RCAN2-90	NM_001251973	exon4	c.G421T	p.G141X	TGTCTCCATCTGT	.	98	5	97	0	.	2	2	0	0	0	A	46214635	C	A	46214635	4	1	30	1	0	0	0	0	0	1	0	0	13204	603	21	3	318	3	RCAN2	6	46214635	Nonsense_Mutation	SNP	C	TCGA-OR-A5K9-01A-11D-A29I-10	5211990	46214635	124900432	91	5195										
PKHD1	5314	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	51524734	51524734	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.10188679245283	27	0.00131594018804135	2.23724461158509	2.50494909502262	2.12376118925831	0.0524259106482342	0.532036613272311	15	tgaatccttgcatcagaaatTggtatgtacatttctgttct	7	7	3	2	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	PKHD1-603	NM_138694	exon61	c.A10190T	p.Q3397L	AGAAATTGGTATG	.	79	30	93	0	.	0	0	0	0	0	A	51524734	T	A	51524734	3	1	30	1	0	0	0	0	1	0	0	0	12000	1812	63	5	2062	5	PKHD1	6	51524734	Missense_Mutation	SNP	T	TCGA-OR-A5K9-01A-11D-A29I-10	5310099	51524734	119590333	92	5196										
KHDC1L	100129128	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	73935131	73935131	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.10188679245283	27	0.00131594018804135	2.23724461158509	2.50494909502262	2.12376118925831	0.0524259106482342	0.532036613272311	15	agcactcgttcccacggccaTgctgtgctcccacctgattc	8	17	0	1	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	KHDC1L-1	NM_001126063	exon1	c.A1G	p.M1V	CGGCCATGCTGTG	.	103	27	89	1	.	0	0	0	0	0	C	73935131	T	C	73935131	3	2	30	1	0	0	0	0	1	0	0	0	8166	1464	51	4	397	4	KHDC1L	6	73935131	Missense_Mutation	SNP	T	TCGA-OR-A5K9-01A-11D-A29I-10	22410397	73935131	97179936	93	5197										
POU3F2	5454	hgsc.bcm.edu	37	chr6	99283376	99283376	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.10188679245283	27	0.00131594018804135	2.23724461158509	2.50494909502262	2.12376118925831	0.0524259106482342	0.532036613272311	15	gccggcgggcagccggccggTctgcaccaccacggcctgcg	16	18	1	0	rs195860		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	POU3F2-90	NM_005604	exon1	c.T627G	p.G209G	GGCCGGTCTGCAC	.	22	6	0	0	T|0.089;G|0.911	0	0	0	0	0	G	99283376	T	G	99283376	2	3	30	1	0	0	0	0	0	0	0	1	12304	1654	58	5		5	POU3F2	6	99283376	Silent	SNP	T	TCGA-OR-A5K9-01A-11D-A29I-10	25348245	99283376	71831691	94	5198										
REV3L	5980	hgsc.bcm.edu;bcgsc.ca	37	chr6	111693904	111693904	+	Frame_Shift_Del	DEL	G	G	-													0.10188679245283	27	0.00131594018804135	2.23724461158509	2.50494909502262	2.12376118925831	0.0524259106482342	0.532036613272311	15	ccataatttcttccctacttGggggggacataagtggtttc					novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	REV3L-294	NM_002912	exon13	c.5654delC	p.P1885fs	CTACTTGGGGGGG	.	127	56	110	0	.	0	0	0	0	0	-	111693904	G	-	111693904	7	5	30	1	0	1	0	1	0	0	0	0	13275	1348	47	0	3818	0	REV3L	6	111693904	Frame_Shift_Del	DEL	G	TCGA-OR-A5K9-01A-11D-A29I-10	12410528	111693904	59421163	95	5199										
MCM9	254394	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	119252669	119252669	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.10188679245283	27	0.00131594018804135	2.23724461158509	2.50494909502262	2.12376118925831	0.0524259106482342	0.532036613272311	15	aattgtcaaggctgaccttcGcagtgcactatcaaaaattg	8	9	2	1	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	MCM9-515	NM_017696	exon1	c.C220G	p.R74G	ACCTTCGCAGTGC	.	181	115	189	0	.	1	1	0	0	0	C	119252669	G	C	119252669	3	2	30	1	0	0	0	0	1	0	0	0	9422	1095	38	2	979	2	MCM9	6	119252669	Missense_Mutation	SNP	G	TCGA-OR-A5K9-01A-11D-A29I-10	7558765	119252669	51862398	96	5200										
KIAA1244	57221	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	138531144	138531144	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.10188679245283	27	0.00131594018804135	2.23724461158509	2.50494909502262	2.12376118925831	0.0524259106482342	0.532036613272311	15	tgccgtgaaagtgacgccttCgctcaacgaggacctgcagg	13	12	1	2	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	KIAA1244-228	NM_020340	exon4	c.C317T	p.S106L	CGCCTTCGCTCAA	.	681	223	362	0	.	0	0	0	0	0	T	138531144	C	T	138531144	3	4	30	1	0	0	0	0	1	0	0	0	8238	893	31	1	331	1	KIAA1244	6	138531144	Missense_Mutation	SNP	C	TCGA-OR-A5K9-01A-11D-A29I-10	19278475	138531144	32583923	97	5201										
LRP11	84918	hgsc.bcm.edu	37	chr6	150184882	150184882	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.10188679245283	27	0.00131594018804135	2.23724461158509	2.50494909502262	2.12376118925831	0.0524259106482342	0.532036613272311	15	cgctgtagccgccgctgcccGggcccgggcagtcctcctgg	15	18	0	0	rs9322225		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	LRP11-90	NM_032832	exon1	c.C275G	p.P92R	CTGCCCGGGCCCG	.	10	10	0	0	G|0.492;C|0.508	1	0	1	0	0	C	150184882	G	C	150184882	3	2	30	1	0	0	0	0	1	0	0	0	8980	1116	39	2	1255	2	LRP11	6	150184882	Missense_Mutation	SNP	G	TCGA-OR-A5K9-01A-11D-A29I-10	11653738	150184882	20930185	98	5202										
KIF25	3834	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	168442715	168442715	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.10188679245283	27	0.00131594018804135	2.23724461158509	2.50494909502262	2.12376118925831	0.0524259106482342	0.532036613272311	15	aggaagggcaggaaggagccGcagagcttctcaaggggcct	17	9	1	1	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	KIF25-92	NM_030615	exon7	c.G713A	p.R238H	GGAGCCGCAGAGC	.	399	128	215	0	.	0	0	0	0	0	A	168442715	G	A	168442715	3	1	30	1	0	0	0	0	1	0	0	0	8314	1087	38	1	735	1	KIF25	6	168442715	Missense_Mutation	SNP	G	TCGA-OR-A5K9-01A-11D-A29I-10	18257833	168442715	2672352	99	5203										
ABCB5	340273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	20782576	20782576	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.10188679245283	27	0.00131594018804135	2.23724461158509	2.50494909502262	2.12376118925831	0.0524259106482342	0.532036613272311	15	cccagatgttttcatcctccGtggcttatccctcagtattg	7	13	2	1	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	ABCB5-158	NM_001163941	exon25	c.G3101A	p.R1034H	TCCTCCGTGGCTT	.	252	98	172	0	.	0	0	0	0	0	A	20782576	G	A	20782576	3	1	30	1	0	0	0	0	1	0	0	0	44	1145	40	1	3236	1	ABCB5	7	20782576	Missense_Mutation	SNP	G	TCGA-OR-A5K9-01A-11D-A29I-10		20782576	138356087	100	5204										
NPVF	64111	ucsc.edu;bcgsc.ca	37	chr7	25267934	25267934	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.10188679245283	27	0.00131594018804135	2.23724461158509	2.50494909502262	2.12376118925831	0.0524259106482342	0.532036613272311	15	aacttacctcagaatatttgTcataattttctttgctgtga	5	7	3	2	rs877834	byfrequency	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	NPVF-91	NM_022150	exon1	c.A125G	p.D42G	TATTTGTCATAAT	.	65	7	83	0	C|0.206;N|0.000	0	0	0	0	0	C	25267934	T	C	25267934	3	2	30	1	0	0	0	0	1	0	0	0	10634	1667	58	4	477	4	NPVF	7	25267934	Missense_Mutation	SNP	T	TCGA-OR-A5K9-01A-11D-A29I-10	4485358	25267934	133870729	101	5205										
NPSR1	387129	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	34698162	34698162	+	Nonsense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.10188679245283	27	0.00131594018804135	2.23724461158509	2.50494909502262	2.12376118925831	0.0524259106482342	0.532036613272311	15	gaatggggttccttctactaCtcctttaaggtaagtttctt	8	8	2	0	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	NPSR1-94	NM_207172	exon1	c.C138G	p.Y46X	CTACTACTCCTTT	.	209	56	134	1	.	0	0	0	0	0	G	34698162	C	G	34698162	4	3	30	1	0	0	0	0	0	1	0	0	10629	576	20	3	140	3	NPSR1	7	34698162	Nonsense_Mutation	SNP	C	TCGA-OR-A5K9-01A-11D-A29I-10	9430228	34698162	124440501	102	5206										
AEBP1	165	broad.mit.edu;bcgsc.ca	37	chr7	44150789	44150789	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.10188679245283	27	0.00131594018804135	2.23724461158509	2.50494909502262	2.12376118925831	0.0524259106482342	0.532036613272311	15	cgcacagaatgaggtggtggCcaccgatgacctggatttcc	13	11	0	3	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	AEBP1-90	NM_001129	exon14	c.C1667A	p.A556D	TGGTGGCCACCGA	.	327	20	179	1	.	6	6	0	0	0	A	44150789	C	A	44150789	3	1	30	1	0	0	0	0	1	0	0	0	349	739	26	3	1721	3	AEBP1	7	44150789	Missense_Mutation	SNP	C	TCGA-OR-A5K9-01A-11D-A29I-10	9452627	44150789	114987874	103	5207										
RAMP3	10268	hgsc.bcm.edu	37	chr7	45197433	45197433	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.10188679245283	27	0.00131594018804135	2.23724461158509	2.50494909502262	2.12376118925831	0.0524259106482342	0.532036613272311	15	tgcggccggccagccatggaGactggagcgctgcggcgccc	17	15	0	1	rs67477213		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	RAMP3-90	NM_005856	exon1	c.G6A	p.E2E	CATGGAGACTGGA	.	26	18	0	0	G|0.760;A|0.240	1	1	0	0	0	A	45197433	G	A	45197433	2	1	30	1	0	0	0	0	0	0	0	1	13058	933	33	3		3	RAMP3	7	45197433	Silent	SNP	G	TCGA-OR-A5K9-01A-11D-A29I-10	1046644	45197433	113941230	104	5208										
MBLAC1	255374	hgsc.bcm.edu	37	chr7	99725210	99725210	+	Silent	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.10188679245283	27	0.00131594018804135	2.23724461158509	2.50494909502262	2.12376118925831	0.0524259106482342	0.532036613272311	15	caccgagagtccccgcgcggGagtggcggcgcagaggccgc	18	15	0	2	rs142426754		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	MBLAC1-135	NM_203397	exon2	c.G192T	p.G64G	GCGCGGGAGTGGC	.	13	12	0	0	G|0.976;T|0.024	0	0	0	0	0	T	99725210	G	T	99725210	2	4	30	1	0	0	0	0	0	0	0	1	9379	1161	41	3		3	MBLAC1	7	99725210	Silent	SNP	G	TCGA-OR-A5K9-01A-11D-A29I-10	54527777	99725210	59413453	105	5209										
RELN	5649	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	103243773	103243773	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.10188679245283	27	0.00131594018804135	2.23724461158509	2.50494909502262	2.12376118925831	0.0524259106482342	0.532036613272311	15	tgctgaagtacagagatgatCcagaagagatgacaccacac	10	9	0	6	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	RELN-574	NM_173054	exon24	c.G3311C	p.G1104A	GATGATCCAGAAG	.	164	44	156	0	.	5	4	1	0	0	G	103243773	C	G	103243773	3	3	30	1	0	0	0	0	1	0	0	0	13255	855	30	3	7239	3	RELN	7	103243773	Missense_Mutation	SNP	C	TCGA-OR-A5K9-01A-11D-A29I-10	3518563	103243773	55894890	106	5210										
KIAA1549	57670	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr7	138601908	138601908	+	Frame_Shift_Del	DEL	C	C	-													0.10188679245283	27	0.00131594018804135	2.23724461158509	2.50494909502262	2.12376118925831	0.0524259106482342	0.532036613272311	15	gaaagaggccaggacagacaCgtgaccgtctagagcactga					novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	KIAA1549-369	NM_020910	exon2	c.2464delG	p.V822fs	CAGACACGTGACC	.	142	29	96	0	.	0	0	0	0	0	-	138601908	C	-	138601908	7	5	30	1	0	1	0	1	0	0	0	0	8265	536	19	0	3464	0	KIAA1549	7	138601908	Frame_Shift_Del	DEL	C	TCGA-OR-A5K9-01A-11D-A29I-10	35358135	138601908	20536755	107	5211										
SSPO	23145	bcgsc.ca	37	chr7	149486382	149486382	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.10188679245283	27	0.00131594018804135	2.23724461158509	2.50494909502262	2.12376118925831	0.0524259106482342	0.532036613272311	15	tgagccgagctatccgtgccCccagggcttgctggcctgtg	14	14	0	1	rs2074704	byfrequency	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	.	NM_198455	exon30	c.C4358G	p.P1453R	CGTGCCCCCAGGG	.	291	112	23	1	C|0.891;G|0.109	0	0	0	0	0	G	149486382	C	G	149486382	3	3	30	1	0	0	0	0	1	0	0	0	15226	623	22	3	4472	3	SSPO	7	149486382	Missense_Mutation	SNP	C	TCGA-OR-A5K9-01A-11D-A29I-10	10884474	149486382	9652281	108	5212										
NOS3	4846	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	150698991	150698991	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.10188679245283	27	0.00131594018804135	2.23724461158509	2.50494909502262	2.12376118925831	0.0524259106482342	0.532036613272311	15	tcctgtatggctccgagaccGgccgggcccagagctacgca	13	15	0	2	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	NOS3-1011	NM_001160111	exon12	c.G1585T	p.G529C	GAGACCGGCCGGG	.	263	52	191	0	.	1	1	0	0	0	T	150698991	G	T	150698991	3	4	30	1	0	0	0	0	1	0	0	0	10573	1116	39	2	1631	2	NOS3	7	150698991	Missense_Mutation	SNP	G	TCGA-OR-A5K9-01A-11D-A29I-10	1212609	150698991	8439672	109	5213										
SLC4A2	6522	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	150771214	150771214	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.10188679245283	27	0.00131594018804135	2.23724461158509	2.50494909502262	2.12376118925831	0.0524259106482342	0.532036613272311	15	catgacatgggccggggcaaGacccacgctggggccgggca	17	13	0	2	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	SLC4A2-90	NM_003040	exon17	c.G2624C	p.R875T	GGGCAAGACCCAC	.	183	52	78	1	.	56	36	20	0	0	C	150771214	G	C	150771214	3	2	30	1	0	0	0	0	1	0	0	0	14689	942	33	3	2686	3	SLC4A2	7	150771214	Missense_Mutation	SNP	G	TCGA-OR-A5K9-01A-11D-A29I-10	72223	150771214	8367449	110	5214										
CSMD1	64478	bcgsc.ca	37	chr8	3072036	3072036	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.10188679245283	27	0.00131594018804135	2.23724461158509	2.50494909502262	2.12376118925831	0.0524259106482342	0.532036613272311	15	caccattgcaggagggcagcActtggtcccaggagggtttc	14	11	0	0	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	CSMD1-86	NM_033225	exon30	c.T4850G	p.V1617G	GGCAGCACTTGGT	.	317	14	151	0	.	0	0	0	0	0	C	3072036	A	C	3072036	3	2	30	1	0	0	0	0	1	0	0	0	3950	159	6	5	6008	5	CSMD1	8	3072036	Missense_Mutation	SNP	A	TCGA-OR-A5K9-01A-11D-A29I-10		3072036	143291986	111	5215										
RP1L1	94137	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	10465856	10465856	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.10188679245283	27	0.00131594018804135	2.23724461158509	2.50494909502262	2.12376118925831	0.0524259106482342	0.532036613272311	15	ggcctctacactttctgtctCtggctgggcctccttttctg	9	14	4	0	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	RP1L1-139	NM_178857	exon4	c.G5752A	p.E1918K	CTGTCTCTGGCTG	.	45	8	30	0	.	0	0	0	0	0	T	10465856	C	T	10465856	3	4	30	1	0	0	0	0	1	0	0	0	13568	922	32	3	1454	3	RP1L1	8	10465856	Missense_Mutation	SNP	C	TCGA-OR-A5K9-01A-11D-A29I-10	7393820	10465856	135898166	112	5216										
XPO7	23039	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr8	21845361	21845361	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.10188679245283	27	0.00131594018804135	2.23724461158509	2.50494909502262	2.12376118925831	0.0524259106482342	0.532036613272311	15	tggtcctaagcgtcttcataGgaaaaatgtaagtgtttcag	10	6	3	0	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	XPO7-273	NM_015024	exon15	c.G1780A	p.G594R	TTCATAGGAAAAA	.	257	54	173	0	.	0	0	0	0	0	A	21845361	G	A	21845361	3	1	30	1	0	0	0	0	1	0	0	0	17487	1001	35	3	1890	3	XPO7	8	21845361	Missense_Mutation	SNP	G	TCGA-OR-A5K9-01A-11D-A29I-10	11379505	21845361	124518661	113	5217										
ENTPD4	9583	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr8	23305367	23305367	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.10188679245283	27	0.00131594018804135	2.23724461158509	2.50494909502262	2.12376118925831	0.0524259106482342	0.532036613272311	15	attggggttattggtgtctgTagcttcaatgtcggtaactc	12	6	2	0	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	ENTPD4-92	NM_004901	exon4	c.A238G	p.T80A	TGTCTGTAGCTTC	.	503	106	227	1	.	8	5	3	0	0	C	23305367	T	C	23305367	3	2	30	1	0	0	0	0	1	0	0	0	5154	1638	57	4	1652	4	ENTPD4	8	23305367	Missense_Mutation	SNP	T	TCGA-OR-A5K9-01A-11D-A29I-10	1460006	23305367	123058655	114	5218										
KIF13B	23303	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr8	29035052	29035052	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.10188679245283	27	0.00131594018804135	2.23724461158509	2.50494909502262	2.12376118925831	0.0524259106482342	0.532036613272311	15	tcgttgctcgttcactgccaGctaaatccaccaggctgagt	9	13	1	1	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	KIF13B-22	NM_015254	exon9	c.C764T	p.A255V	CTGCCAGCTAAAT	.	124	26	93	0	.	11	7	4	0	0	A	29035052	G	A	29035052	3	1	30	1	0	0	0	0	1	0	0	0	8296	971	34	3	4844	3	KIF13B	8	29035052	Missense_Mutation	SNP	G	TCGA-OR-A5K9-01A-11D-A29I-10	5729685	29035052	117328970	115	5219										
WRN	7486	bcgsc.ca	37	chr8	31024654	31024654	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.10188679245283	27	0.00131594018804135	2.23724461158509	2.50494909502262	2.12376118925831	0.0524259106482342	0.532036613272311	15	acagcggacttcaaccttcaTgtgatgtcaacaaaaggaga	9	9	3	2	rs1346044	byfrequency	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	WRN-1036	NM_000553	exon34	c.T4099C	p.C1367R	CCTTCATGTGATG	.	553	12	322	2	T|0.798;C|0.202	29	29	0	0	0	C	31024654	T	C	31024654	3	2	30	1	0	0	0	0	1	0	0	0	17440	1464	51	4	4229	4	WRN	8	31024654	Missense_Mutation	SNP	T	TCGA-OR-A5K9-01A-11D-A29I-10	1989602	31024654	115339368	116	5220										
GPR124	25960	hgsc.bcm.edu	37	chr8	37699516	37699516	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.10188679245283	27	0.00131594018804135	2.23724461158509	2.50494909502262	2.12376118925831	0.0524259106482342	0.532036613272311	15	ctgctgtccagcgagagcggCagtctgcacaacagccccac	11	16	1	1	rs7010546	byfrequency	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	GPR124-157	NM_032777	exon19	c.C3660T	p.G1220G	GAGCGGCAGTCTG	.	15	13	0	0	C|0.479;G|0.000;T|0.520	0	0	0	0	0	T	37699516	C	T	37699516	2	4	30	1	0	0	0	0	0	0	0	1	6658	697	25	3		3	GPR124	8	37699516	Silent	SNP	C	TCGA-OR-A5K9-01A-11D-A29I-10	6674862	37699516	108664506	117	5221										
RB1CC1	9821	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	53569634	53569634	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.10188679245283	27	0.00131594018804135	2.23724461158509	2.50494909502262	2.12376118925831	0.0524259106482342	0.532036613272311	15	gcagattacagcttctttttCatgtttaaccaaagcaaatt	5	8	2	1	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	RB1CC1-170	NM_001083617	exon15	c.G2755T	p.E919X	CTTTTTCATGTTT	.	37	6	33	0	.	20	20	0	0	0	A	53569634	C	A	53569634	4	1	30	1	0	0	0	0	0	1	0	0	13134	835	29	3	2069	3	RB1CC1	8	53569634	Nonsense_Mutation	SNP	C	TCGA-OR-A5K9-01A-11D-A29I-10	15870118	53569634	92794388	118	5222										
C8orf46	254778	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	67428183	67428183	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.10188679245283	27	0.00131594018804135	2.23724461158509	2.50494909502262	2.12376118925831	0.0524259106482342	0.532036613272311	15	cagcccttccccaaggagcaGaagcctctctaccactgaca	7	17	1	2	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	C8orf46-92	NM_152765	exon6	c.G496A	p.E166K	GGAGCAGAAGCCT	.	47	7	45	0	.	0	0	0	0	0	A	67428183	G	A	67428183	3	1	30	1	0	0	0	0	1	0	0	0	2437	943	33	3	518	3	C8orf46	8	67428183	Missense_Mutation	SNP	G	TCGA-OR-A5K9-01A-11D-A29I-10	13858549	67428183	78935839	119	5223										
RSPO2	340419	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr8	108970363	108970363	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.10188679245283	27	0.00131594018804135	2.23724461158509	2.50494909502262	2.12376118925831	0.0524259106482342	0.532036613272311	15	ctggattcagcaatggttggAcacagtattgtgtctttcac	10	8	3	0	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	RSPO2-231	NM_178565	exon5	c.T561C	p.C187C	GGTTGGACACAGT	.	298	61	146	0	.	0	0	0	0	0	G	108970363	A	G	108970363	2	3	30	1	0	0	0	0	0	0	0	1	13745	273	10	4		4	RSPO2	8	108970363	Silent	SNP	A	TCGA-OR-A5K9-01A-11D-A29I-10	41542180	108970363	37393659	120	5224										
MAL2	114569	hgsc.bcm.edu	37	chr8	120220776	120220776	+	Splice_Site	DEL	G	G	-													0.10188679245283	27	0.00131594018804135	2.23724461158509	2.50494909502262	2.12376118925831	0.0524259106482342	0.532036613272311	15	cgtgtccttcccgccgccccGgggtcaccctgcccgccggc					novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	.	NM_052886	exon1	c.64+1G>-	.	CGCCCCGGGGTCA	.	20	19	0	0	.	0	0	0	0	0	-	120220776	G	-	120220776	8	5	30	1	0	1	0	1	0	0	1	0	9228	1116	39	0	67	0	MAL2	8	120220776	Splice_Site	DEL	G	TCGA-OR-A5K9-01A-11D-A29I-10	11250413	120220776	26143246	121	5225										
ZNF696	79943	hgsc.bcm.edu	37	chr8	144378868	144378868	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.10188679245283	27	0.00131594018804135	2.23724461158509	2.50494909502262	2.12376118925831	0.0524259106482342	0.532036613272311	15	ggcttcttccggcaccagcgActccacacgggcgagaagcc	12	16	1	1	rs7386259	byfrequency	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	ZNF696-90	NM_030895	exon3	c.A1023G	p.R341R	CCAGCGACTCCAC	.	14	14	0	0	A|0.118;G|0.882	6	0	6	0	0	G	144378868	A	G	144378868	2	3	30	1	0	0	0	0	0	0	0	1	18136	262	10	4		4	ZNF696	8	144378868	Silent	SNP	A	TCGA-OR-A5K9-01A-11D-A29I-10	24158092	144378868	1985154	122	5226										
PLEC	5339	hgsc.bcm.edu	37	chr8	144998190	144998190	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.10188679245283	27	0.00131594018804135	2.23724461158509	2.50494909502262	2.12376118925831	0.0524259106482342	0.532036613272311	15	gccagctgccgctgcctcgcAgcctccagctcggcctgctc	11	20	0	0	rs2857829	byfrequency	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	PLEC-141	NM_201380	exon31	c.T6318C	p.A2106A	CCTCGCAGCCTCC	.	33	21	0	0	A|0.738;G|0.262	11	5	6	0	0	G	144998190	A	G	144998190	2	3	30	1	0	0	0	0	0	0	0	1	12081	175	7	4		4	PLEC	8	144998190	Silent	SNP	A	TCGA-OR-A5K9-01A-11D-A29I-10	619322	144998190	1365832	123	5227										
PLEC	5339	hgsc.bcm.edu	37	chr8	145001784	145001784	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.10188679245283	27	0.00131594018804135	2.23724461158509	2.50494909502262	2.12376118925831	0.0524259106482342	0.532036613272311	15	agcctgccagcgctcaagcaActgggcgacccgctcccgcc	11	19	1	0	rs3135109	byfrequency	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	PLEC-141	NM_201380	exon27	c.T3961C	p.L1321L	CAAGCAACTGGGC	.	23	16	1	0	G|0.246;A|0.754	38	12	26	0	0	G	145001784	A	G	145001784	2	3	30	1	0	0	0	0	0	0	0	1	12081	40	2	4		4	PLEC	8	145001784	Silent	SNP	A	TCGA-OR-A5K9-01A-11D-A29I-10	3594	145001784	1362238	124	5228										
SCRT1	83482	hgsc.bcm.edu	37	chr8	145557497	145557497	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.10188679245283	27	0.00131594018804135	2.23724461158509	2.50494909502262	2.12376118925831	0.0524259106482342	0.532036613272311	15	tgtggagggagcggcggcagAgccggcattggaagccttac	18	9	0	1	rs7013127		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	.	NM_031309	exon2	c.T397G	p.S133A	CGGCAGAGCCGGC	.	7	6	0	0	A|0.096;C|0.904	0	0	0	0	0	C	145557497	A	C	145557497	3	2	30	1	0	0	0	0	1	0	0	0	13976	304	11	5	653	5	SCRT1	8	145557497	Missense_Mutation	SNP	A	TCGA-OR-A5K9-01A-11D-A29I-10	555713	145557497	806525	125	5229										
MFSD3	113655	broad.mit.edu;bcgsc.ca	37	chr8	145736053	145736053	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.10188679245283	27	0.00131594018804135	2.23724461158509	2.50494909502262	2.12376118925831	0.0524259106482342	0.532036613272311	15	gcctgtcagactgccttggtCttccacctggacaccctggg	11	15	2	1	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	MFSD3-69	NM_138431	exon3	c.C903A	p.V301V	CTTGGTCTTCCAC	.	74	5	44	0	.	33	30	3	0	0	A	145736053	C	A	145736053	2	1	30	1	0	0	0	0	0	0	0	1	9560	900	32	3		3	MFSD3	8	145736053	Silent	SNP	C	TCGA-OR-A5K9-01A-11D-A29I-10	178556	145736053	627969	126	5230										
ZNF517	340385	hgsc.bcm.edu	37	chr8	146033347	146033347	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.10188679245283	27	0.00131594018804135	2.23724461158509	2.50494909502262	2.12376118925831	0.0524259106482342	0.532036613272311	15	gggtgcccaggacggcggcgTggggcagggcgccctgctcg	21	13	0	0	rs2976653		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	ZNF517-90	NM_213605	exon5	c.T1046C	p.V349A	GCGGCGTGGGGCA	.	12	12	0	0	G|0.992;C|0.006	2	0	2	0	0	C	146033347	T	C	146033347	3	2	30	1	0	0	0	0	1	0	0	0	17998	1696	59	4	1060	4	ZNF517	8	146033347	Missense_Mutation	SNP	T	TCGA-OR-A5K9-01A-11D-A29I-10	297294	146033347	330675	127	5231										
C9orf66	157983	hgsc.bcm.edu	37	chr9	214706	214706	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.10188679245283	27	0.00131594018804135	2.23724461158509	2.50494909502262	2.12376118925831	0.0524259106482342	0.532036613272311	15	gcgccgtctgccccagtatcGggaggccagttccgcgctgg	15	15	1	0	rs540473	byfrequency	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	C9orf66-514	NM_152569	exon1	c.C691G	p.R231G	AGTATCGGGAGGC	.	7	7	0	0	G|0.516;C|0.484	0	0	0	0	0	C	214706	G	C	214706	3	2	30	1	0	0	0	0	1	0	0	0	2496	1124	39	2	200	2	C9orf66	9	214706	Missense_Mutation	SNP	G	TCGA-OR-A5K9-01A-11D-A29I-10		214706	140998725	128	5232										
C9orf41	138199	broad.mit.edu	37	chr9	77642981	77642983	+	In_Frame_Del	DEL	CTC	CTC	-													0.10188679245283	27	0.00131594018804135	2.23724461158509	2.50494909502262	2.12376118925831	0.0524259106482342	0.532036613272311	15	aagtgctcacgctcaagcctCtcctcctcctcctcggtgct					novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	C9orf41-92	NM_152420	exon1	c.175_177del	p.59_59del	AAGCCTCTCCTCC	.	316	8	67	0	.	0	0	0	0	0	-	77642983	CTC	-	77642981	7	5	30	1	0	1	0	1	0	0	0	0	2488	912	32	0	1084	0	C9orf41	9	77642981	In_Frame_Del	DEL	CTC	TCGA-OR-A5K9-01A-11D-A29I-10	77428275	77642981	63570450	129	5233										
TLE4	7091	broad.mit.edu	37	chr9	82267611	82267611	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.10188679245283	27	0.00131594018804135	2.23724461158509	2.50494909502262	2.12376118925831	0.0524259106482342	0.532036613272311	15	tgccattccacccatcggtaGcagtgccgggcttctggccc	11	16	1	0	rs41307447	byfrequency	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	TLE4-524	NM_007005	exon7	c.G494C	p.S165T	TCGGTAGCAGTGC	.	108	5	80	1	G|0.997;C|0.003	22	22	0	0	0	C	82267611	G	C	82267611	3	2	30	1	0	0	0	0	1	0	0	0	15978	971	34	3	520	3	TLE4	9	82267611	Missense_Mutation	SNP	G	TCGA-OR-A5K9-01A-11D-A29I-10	4624630	82267611	58945820	130	5234										
C9orf170	401535	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	89771511	89771511	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.10188679245283	27	0.00131594018804135	2.23724461158509	2.50494909502262	2.12376118925831	0.0524259106482342	0.532036613272311	15	ctgtttctccggaaaaccctGactaatacagtagaggatat	8	9	1	2	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	C9orf170-90	NM_001001709	exon2	c.G192T	p.L64L	AACCCTGACTAAT	.	78	15	85	0	.	0	0	0	0	0	T	89771511	G	T	89771511	2	4	30	1	0	0	0	0	0	0	0	1	2475	1277	45	3		3	C9orf170	9	89771511	Silent	SNP	G	TCGA-OR-A5K9-01A-11D-A29I-10	7503900	89771511	51441920	131	5235										
GALNT12	79695	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr9	101589096	101589096	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.10188679245283	27	0.00131594018804135	2.23724461158509	2.50494909502262	2.12376118925831	0.0524259106482342	0.532036613272311	15	ccaaggtgcgcctgatccgcGccaacaagagagagggcctg	14	13	0	3	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	GALNT12-92	NM_024642	exon3	c.G604A	p.A202T	ATCCGCGCCAACA	.	119	34	39	0	.	3	2	1	0	0	A	101589096	G	A	101589096	3	1	30	1	0	0	0	0	1	0	0	0	6230	1087	38	1	614	1	GALNT12	9	101589096	Missense_Mutation	SNP	G	TCGA-OR-A5K9-01A-11D-A29I-10	11817585	101589096	39624335	132	5236										
GRIN3A	116443	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	104449164	104449164	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.10188679245283	27	0.00131594018804135	2.23724461158509	2.50494909502262	2.12376118925831	0.0524259106482342	0.532036613272311	15	cccaaactgggttgtaatttCgaaaatccgccggatacttt	8	10	0	0	rs145326290		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	GRIN3A-96	NM_133445	exon2	c.G1018A	p.E340K	TAATTTCGAAAAT	.	67	16	82	0	C|0.999;T|0.000	0	0	0	0	0	T	104449164	C	T	104449164	3	4	30	1	0	0	0	0	1	0	0	0	6804	893	31	1	2361	1	GRIN3A	9	104449164	Missense_Mutation	SNP	C	TCGA-OR-A5K9-01A-11D-A29I-10	2860068	104449164	36764267	133	5237										
CRB2	286204	hgsc.bcm.edu	37	chr9	126135831	126135831	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.10188679245283	27	0.00131594018804135	2.23724461158509	2.50494909502262	2.12376118925831	0.0524259106482342	0.532036613272311	15	gctgtgcgcatcctgctggcTgagaacttcaccggctgctt	12	13	1	1	rs7848449	byfrequency	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	CRB2-91	NM_173689	exon10	c.T3021C	p.A1007A	GCTGGCTGAGAAC	.	16	6	0	0	T|0.886;C|0.114	0	0	0	0	0	C	126135831	T	C	126135831	2	2	30	1	0	0	0	0	0	0	0	1	3855	1567	55	4		4	CRB2	9	126135831	Silent	SNP	T	TCGA-OR-A5K9-01A-11D-A29I-10	21686667	126135831	15077600	134	5238										
TMEM8C	389827	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr9	136379902	136379902	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.10188679245283	27	0.00131594018804135	2.23724461158509	2.50494909502262	2.12376118925831	0.0524259106482342	0.532036613272311	15	ctgtggacataagtgtagtcCcagtcctgcggggggcaagc	15	10	0	0	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	TMEM8C-68	NM_001080483	exon5	c.G522A	p.W174X	GTAGTCCCAGTCC	.	103	32	68	0	.	0	0	0	0	0	T	136379902	C	T	136379902	4	4	30	1	0	0	0	0	0	1	0	0	16253	624	22	3	147	3	TMEM8C	9	136379902	Nonsense_Mutation	SNP	C	TCGA-OR-A5K9-01A-11D-A29I-10	10244071	136379902	4833529	135	5239										
PRKCQ	5588	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr10	6533734	6533734	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.10188679245283	27	0.00131594018804135	2.23724461158509	2.50494909502262	2.12376118925831	0.0524259106482342	0.532036613272311	15	tcttgtaattgtagactttaAatctgtgtggcatgtcaatt	8	5	3	1	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	PRKCQ-1380	NM_006257	exon8	c.T701A	p.F234Y	ACTTTAAATCTGT	.	164	32	110	0	.	0	0	0	0	0	T	6533734	A	T	6533734	3	4	30	1	0	0	0	0	1	0	0	0	12547	14	1	5	1463	5	PRKCQ	10	6533734	Missense_Mutation	SNP	A	TCGA-OR-A5K9-01A-11D-A29I-10		6533734	129001013	136	5240										
ECHDC3	79746	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr10	11805518	11805518	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.10188679245283	27	0.00131594018804135	2.23724461158509	2.50494909502262	2.12376118925831	0.0524259106482342	0.532036613272311	15	cttcctccagaagagaaaacCtgtctggtcacacgagccag	9	13	2	2	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	ECHDC3-90	NM_024693	exon5	c.C887G	p.P296R	GAAAACCTGTCTG	.	16	8	10	0	.	0	0	0	0	0	G	11805518	C	G	11805518	3	3	30	1	0	0	0	0	1	0	0	0	4906	681	24	3	905	3	ECHDC3	10	11805518	Missense_Mutation	SNP	C	TCGA-OR-A5K9-01A-11D-A29I-10	5271784	11805518	123729229	137	5241										
LYZL1	84569	ucsc.edu;bcgsc.ca	37	chr10	29581490	29581490	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.10188679245283	27	0.00131594018804135	2.23724461158509	2.50494909502262	2.12376118925831	0.0524259106482342	0.532036613272311	15	gagcggctacaacaccacagCccagacggtcctggatgacg	12	14	0	2	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	LYZL1-90	NM_032517	exon3	c.C320G	p.A107G	CCACAGCCCAGAC	.	376	360	260	3	.	0	0	0	0	0	G	29581490	C	G	29581490	3	3	30	1	0	0	0	0	1	0	0	0	9159	739	26	3	330	3	LYZL1	10	29581490	Missense_Mutation	SNP	C	TCGA-OR-A5K9-01A-11D-A29I-10	17775972	29581490	105953257	138	5242										
ERCC6	2074	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr10	50714007	50714007	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.10188679245283	27	0.00131594018804135	2.23724461158509	2.50494909502262	2.12376118925831	0.0524259106482342	0.532036613272311	15	tcactttcctcagaatcgtcCtccagcttcagacgtttctc	5	15	4	2	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	ERCC6-1153	NM_000124	exon6	c.G1449T	p.M483I	ATCGTCCTCCAGC	.	41	13	48	0	.	0	0	0	0	0	A	50714007	C	A	50714007	3	1	30	1	0	0	0	0	1	0	0	0	5230	680	24	3	3096	3	ERCC6	10	50714007	Missense_Mutation	SNP	C	TCGA-OR-A5K9-01A-11D-A29I-10	21132517	50714007	84820740	139	5243										
PGBD3	267004	broad.mit.edu;bcgsc.ca	37	chr10	50723715	50723715	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.10188679245283	27	0.00131594018804135	2.23724461158509	2.50494909502262	2.12376118925831	0.0524259106482342	0.532036613272311	15	aacaaaagagggcttgaataCcatttctttccacggattga	8	8	1	3	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	PGBD3-109	NM_170753	exon2	c.A1446T	p.I482I	TGAATACCATTTC	.	62	18	55	1	.	2	2	0	0	0	A	50723715	C	A	50723715	2	1	30	1	0	0	0	0	0	0	0	1	11811	508	18	3		3	PGBD3	10	50723715	Silent	SNP	C	TCGA-OR-A5K9-01A-11D-A29I-10	9708	50723715	84811032	140	5244										
HECTD2	143279	hgsc.bcm.edu	37	chr10	93170250	93170250	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.10188679245283	27	0.00131594018804135	2.23724461158509	2.50494909502262	2.12376118925831	0.0524259106482342	0.532036613272311	15	ctccgctggtggtggcggcgCccgcgcctgaggagaggaaa	18	12	0	2	rs7081569	byfrequency	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	HECTD2-658	NM_182765	exon1	c.C55G	p.P19A	GCGGCGCCCGCGC	.	7	7	0	0	C|0.154;G|0.846	1	0	1	0	0	G	93170250	C	G	93170250	3	3	30	1	0	0	0	0	1	0	0	0	7061	739	26	3	57	3	HECTD2	10	93170250	Missense_Mutation	SNP	C	TCGA-OR-A5K9-01A-11D-A29I-10	42446535	93170250	42364497	141	5245										
NDUFB8	4714	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr10	102289594	102289594	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.10188679245283	27	0.00131594018804135	2.23724461158509	2.50494909502262	2.12376118925831	0.0524259106482342	0.532036613272311	15	tggactcccaagaccccggcCctggccaccgccatcttcac	8	20	2	1	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	NDUFB8-90	NM_005004	exon1	c.G15T	p.R5S	CCCGGCCCTGGCC	.	188	118	90	0	.	271	109	161	1	0	A	102289594	C	A	102289594	3	1	30	1	0	0	0	0	1	0	0	0	10316	622	22	3	565	3	NDUFB8	10	102289594	Missense_Mutation	SNP	C	TCGA-OR-A5K9-01A-11D-A29I-10	9119344	102289594	33245153	142	5246										
C10orf95	79946	hgsc.bcm.edu	37	chr10	104210735	104210735	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.10188679245283	27	0.00131594018804135	2.23724461158509	2.50494909502262	2.12376118925831	0.0524259106482342	0.532036613272311	15	tcccgggccggctgcggaagCtgtgggcctggactgggggt	20	11	0	0	rs2281878	byfrequency	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	C10orf95-91	NM_024886	exon2	c.G253T	p.A85S	CGGAAGCTGTGGG	.	8	8	0	0	C|0.759;A|0.241	2	0	2	0	0	A	104210735	C	A	104210735	3	1	30	1	0	0	0	0	1	0	0	0	1630	797	28	3	524	3	C10orf95	10	104210735	Missense_Mutation	SNP	C	TCGA-OR-A5K9-01A-11D-A29I-10	1921141	104210735	31324012	143	5247										
C10orf90	118611	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr10	128193343	128193343	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.10188679245283	27	0.00131594018804135	2.23724461158509	2.50494909502262	2.12376118925831	0.0524259106482342	0.532036613272311	15	gggcccacgcgtctggccgtGatggtgatggatgcaaaccc	15	12	1	2	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	C10orf90-92	NM_001004298	exon3	c.C426T	p.I142I	GGCCGTGATGGTG	.	15	5	14	0	.	0	0	0	0	0	A	128193343	G	A	128193343	2	1	30	1	0	0	0	0	0	0	0	1	1627	1280	45	3		3	C10orf90	10	128193343	Silent	SNP	G	TCGA-OR-A5K9-01A-11D-A29I-10	23982608	128193343	7341404	144	5248										
C11orf35	256329	hgsc.bcm.edu	37	chr11	556063	556063	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.10188679245283	27	0.00131594018804135	2.23724461158509	2.50494909502262	2.12376118925831	0.0524259106482342	0.532036613272311	15	ggaggggaacgggctcccggCtcgaggacgcgcgcagcggc	20	13	0	0	rs144614541		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	C11orf35-69	NM_173573	exon11	c.G1310A	p.S437N	TCCCGGCTCGAGG	.	8	8	0	0	C|0.968;T|0.032	3	0	3	0	0	T	556063	C	T	556063	3	4	30	1	0	0	0	0	1	0	0	0	1642	797	28	3	610	3	C11orf35	11	556063	Missense_Mutation	SNP	C	TCGA-OR-A5K9-01A-11D-A29I-10		556063	134450453	145	5249										
IRF7	3665	hgsc.bcm.edu	37	chr11	615103	615103	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.10188679245283	27	0.00131594018804135	2.23724461158509	2.50494909502262	2.12376118925831	0.0524259106482342	0.532036613272311	15	gctggggtccccaccttgaaGatgcgcgcgtcggcctcgct	14	15	0	2	rs113083699		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	IRF7-90	NM_004031	exon1	c.C216T	p.I72I	CTTGAAGATGCGC	.	13	12	0	0	G|0.949;A|0.051	0	0	0	0	0	A	615103	G	A	615103	2	1	30	1	0	0	0	0	0	0	0	1	7856	932	33	3		3	IRF7	11	615103	Silent	SNP	G	TCGA-OR-A5K9-01A-11D-A29I-10	59040	615103	134391413	146	5250										
MUC5B	727897	hgsc.bcm.edu	37	chr11	1253980	1253980	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.10188679245283	27	0.00131594018804135	2.23724461158509	2.50494909502262	2.12376118925831	0.0524259106482342	0.532036613272311	15	caagggcgtacagctcagcgActggagggacggcgtctgca	16	11	2	0	rs202127660		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	.	NM_002458	exon17	c.A2045G	p.D682G	TCAGCGACTGGAG	.	143	15	32	0	.	0	0	0	0	0	G	1253980	A	G	1253980	3	3	30	1	0	0	0	0	1	0	0	0	10007	275	10	4	2120	4	MUC5B	11	1253980	Missense_Mutation	SNP	A	TCGA-OR-A5K9-01A-11D-A29I-10	638877	1253980	133752536	147	5251										
MUC5B	727897	bcgsc.ca	37	chr11	1272245	1272245	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.10188679245283	27	0.00131594018804135	2.23724461158509	2.50494909502262	2.12376118925831	0.0524259106482342	0.532036613272311	15	caccccagtgctgaccagcaCggccaccacacccgcagcca	8	21	0	1	rs2943511	byfrequency	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	.	NM_002458	exon31	c.C14135T	p.T4712M	CCAGCACGGCCAC	.	813	20	735	4	C|0.930;T|0.070	0	0	0	0	0	T	1272245	C	T	1272245	3	4	30	1	0	0	0	0	1	0	0	0	10007	536	19	1	14266	1	MUC5B	11	1272245	Missense_Mutation	SNP	C	TCGA-OR-A5K9-01A-11D-A29I-10	18265	1272245	133734271	148	5252										
KRTAP5-5	439915	broad.mit.edu	37	chr11	1651158	1651169	+	In_Frame_Del	DEL	GGCTGTGGCTCT	GGCTGTGGCTCT	-													0.10188679245283	27	0.00131594018804135	2.23724461158509	2.50494909502262	2.12376118925831	0.0524259106482342	0.532036613272311	15	gctgtggctccggctgtggaGgctgtggctctggctgtggg					novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	KRTAP5-5-23	NM_001001480	exon1	c.88_99del	p.30_33del	TGTGGAGGCTGTG	.	149	12	19	0	.	0	0	0	0	0	-	1651169	GGCTGTGGCTCT	-	1651158	7	5	30	1	0	1	0	1	0	0	0	0	8586	1000	35	0	90	0	KRTAP5-5	11	1651158	In_Frame_Del	DEL	GGCTGTGGCTCT	TCGA-OR-A5K9-01A-11D-A29I-10	378913	1651158	133355358	149	5253										
MRGPRE	116534	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	3250000	3250000	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.10188679245283	27	0.00131594018804135	2.23724461158509	2.50494909502262	2.12376118925831	0.0524259106482342	0.532036613272311	15	gcgccgttggcggcccccacGtgctgtccagcttctctggg	14	16	1	0	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	MRGPRE-136	NM_001039165	exon2	c.C30T	p.H10H	CCCCACGTGCTGT	.	60	55	41	0	.	0	0	0	0	0	A	3250000	G	A	3250000	2	1	30	1	0	0	0	0	0	0	0	1	9792	1136	40	1		1	MRGPRE	11	3250000	Silent	SNP	G	TCGA-OR-A5K9-01A-11D-A29I-10	1598842	3250000	131756516	150	5254										
OR51A4	401666	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	4967624	4967624	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.10188679245283	27	0.00131594018804135	2.23724461158509	2.50494909502262	2.12376118925831	0.0524259106482342	0.532036613272311	15	cacaagtattgagagccttaAgctgctcctttttggatgca	9	9	0	1	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	OR51A4-71	NM_001005329	exon1	c.T707G	p.L236R	GCCTTAAGCTGCT	.	718	333	872	0	.	0	0	0	0	0	C	4967624	A	C	4967624	3	2	30	1	0	0	0	0	1	0	0	0	11116	72	3	5	236	5	OR51A4	11	4967624	Missense_Mutation	SNP	A	TCGA-OR-A5K9-01A-11D-A29I-10	1717624	4967624	130038892	151	5255										
MICALCL	84953	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	12315183	12315183	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.10188679245283	27	0.00131594018804135	2.23724461158509	2.50494909502262	2.12376118925831	0.0524259106482342	0.532036613272311	15	ccccaaactttcggaggcgaGccgtagcccaaggagcaccc	11	16	0	0	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	MICALCL-91	NM_032867	exon3	c.G205C	p.A69P	AGGCGAGCCGTAG	.	109	55	119	0	.	0	0	0	0	0	C	12315183	G	C	12315183	3	2	30	1	0	0	0	0	1	0	0	0	9600	971	34	3	211	3	MICALCL	11	12315183	Missense_Mutation	SNP	G	TCGA-OR-A5K9-01A-11D-A29I-10	7347559	12315183	122691333	152	5256										
KCNK7	10089	broad.mit.edu;bcgsc.ca	37	chr11	65360508	65360508	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.10188679245283	27	0.00131594018804135	2.23724461158509	2.50494909502262	2.12376118925831	0.0524259106482342	0.532036613272311	15	ggcttgtcctgaagctggggCcgcgggcggcagggtgctca	19	11	1	1	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	KCNK7-90	NM_033347	exon3	c.G892A	p.A298T	CTGGGGCCGCGGG	.	98	6	103	0	.	0	0	0	0	0	T	65360508	C	T	65360508	3	4	30	1	0	0	0	0	1	0	0	0	8092	739	26	3	35	3	KCNK7	11	65360508	Missense_Mutation	SNP	C	TCGA-OR-A5K9-01A-11D-A29I-10	53045325	65360508	69646008	153	5257										
GAL3ST3	89792	hgsc.bcm.edu	37	chr11	65810209	65810209	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.10188679245283	27	0.00131594018804135	2.23724461158509	2.50494909502262	2.12376118925831	0.0524259106482342	0.532036613272311	15	accttgcggctgggctgccaCggctgcagctgcttggtgcg	16	13	0	0	rs61895584	byfrequency	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	GAL3ST3-91	NM_033036	exon3	c.G1065A	p.P355P	CTGCCACGGCTGC	.	8	8	0	0	C|0.233;T|0.767	0	0	0	0	0	T	65810209	C	T	65810209	2	4	30	1	0	0	0	0	0	0	0	1	6219	523	19	1		1	GAL3ST3	11	65810209	Silent	SNP	C	TCGA-OR-A5K9-01A-11D-A29I-10	449701	65810209	69196307	154	5258										
FAM181B	220382	hgsc.bcm.edu	37	chr11	82443696	82443696	+	Frame_Shift_Del	DEL	T	T	-													0.10188679245283	27	0.00131594018804135	2.23724461158509	2.50494909502262	2.12376118925831	0.0524259106482342	0.532036613272311	15	cgtcctccccgccgggagaaTccgcagcggcggggtacagg					novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	FAM181B-135	NM_175885	exon1	c.1076delA	p.D359fs	GGAGAATCCGCAG	.	13	11	0	0	.	0	0	0	0	0	-	82443696	T	-	82443696	7	5	30	1	0	1	0	1	0	0	0	0	5525	1435	50	0	208	0	FAM181B	11	82443696	Frame_Shift_Del	DEL	T	TCGA-OR-A5K9-01A-11D-A29I-10	16633487	82443696	52562820	155	5259										
SYTL2	54843	broad.mit.edu	37	chr11	85435193	85435193	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.10188679245283	27	0.00131594018804135	2.23724461158509	2.50494909502262	2.12376118925831	0.0524259106482342	0.532036613272311	15	atatatggcgatgctagagtCaattcaactttacttgtttt	7	6	2	1	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	SYTL2-137	NM_206927	exon1	c.G2307C	p.L769F	TAGAGTCAATTCA	.	41	3	75	0	.	7	7	0	0	0	G	85435193	C	G	85435193	3	3	30	1	0	0	0	0	1	0	0	0	15520	825	29	3	1563	3	SYTL2	11	85435193	Missense_Mutation	SNP	C	TCGA-OR-A5K9-01A-11D-A29I-10	2991497	85435193	49571323	156	5260										
NCAM1	4684	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	113103921	113103921	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.10188679245283	27	0.00131594018804135	2.23724461158509	2.50494909502262	2.12376118925831	0.0524259106482342	0.532036613272311	15	gagccatactccagcacagcCcaggtgcagtttgatgaacc	10	13	0	2	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	NCAM1-23	NM_001242607	exon15	c.C1653G	p.A551A	CACAGCCCAGGTG	.	285	123	222	0	.	27	9	18	0	0	G	113103921	C	G	113103921	2	3	30	1	0	0	0	0	0	0	0	1	10231	610	22	3		3	NCAM1	11	113103921	Silent	SNP	C	TCGA-OR-A5K9-01A-11D-A29I-10	27668728	113103921	21902595	157	5261										
BACE1	23621	hgsc.bcm.edu	37	chr11	117186506	117186506	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.10188679245283	27	0.00131594018804135	2.23724461158509	2.50494909502262	2.12376118925831	0.0524259106482342	0.532036613272311	15	aggagccagggcagggcttgGgccatggtgggccccggcct	19	12	0	0	rs28917234	byfrequency	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	BACE1-91	NM_138972	exon1	c.C6T	p.A2A	GGCTTGGGCCATG	.	25	24	2	0	G|0.979;A|0.021	8	0	8	0	0	A	117186506	G	A	117186506	2	1	30	1	0	0	0	0	0	0	0	1	1282	1219	43	3		3	BACE1	11	117186506	Silent	SNP	G	TCGA-OR-A5K9-01A-11D-A29I-10	4082585	117186506	17820010	158	5262										
BLID	414899	ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	121986666	121986666	+	RNA	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.10188679245283	27	0.00131594018804135	2.23724461158509	2.50494909502262	2.12376118925831	0.0524259106482342	0.532036613272311	15	tggaagaaagtccaaaatttAacttccattcgctttattca	5	8	1	1	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	.	.	.	.	.	AAATTTAACTTCC	.	77	34	134	1	.	0	0	0	0	0	T	121986666	A	T	121986666	1	4	30	0	1	0	0	0	0	0	0	0	1444	377	13	5		5	BLID	11	121986666	RNA	SNP	A	TCGA-OR-A5K9-01A-11D-A29I-10	4800160	121986666	13019850	159	5263										
FKBP4	2288	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	2910398	2910398	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.10188679245283	27	0.00131594018804135	2.23724461158509	2.50494909502262	2.12376118925831	0.0524259106482342	0.532036613272311	15	ccagaaggtcctgcagctctAccccaacaacaaagccgcca	7	17	1	1	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	FKBP4-226	NM_002014	exon9	c.A1148G	p.Y383C	AGCTCTACCCCAA	.	147	89	133	0	.	298	116	182	0	0	G	2910398	A	G	2910398	3	3	30	1	0	0	0	0	1	0	0	0	5929	391	14	4	1182	4	FKBP4	12	2910398	Missense_Mutation	SNP	A	TCGA-OR-A5K9-01A-11D-A29I-10		2910398	130941497	160	5264										
KRT7	3855	hgsc.bcm.edu	37	chr12	52627215	52627215	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.10188679245283	27	0.00131594018804135	2.23724461158509	2.50494909502262	2.12376118925831	0.0524259106482342	0.532036613272311	15	ctctacggcctcggcgcctcAcggccgcgcgtggccgtgcg	15	18	2	0	rs7308888	byfrequency	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	KRT7-90	NM_005556	exon1	c.A135G	p.S45S	CGCCTCACGGCCG	.	16	16	0	0	A|0.133;G|0.867	0	0	0	0	0	G	52627215	A	G	52627215	2	3	30	1	0	0	0	0	0	0	0	1	8504	146	6	4		4	KRT7	12	52627215	Silent	SNP	A	TCGA-OR-A5K9-01A-11D-A29I-10	49716817	52627215	81224680	161	5265										
SOAT2	8435	hgsc.bcm.edu	37	chr12	53509339	53509340	+	Silent	DNP	GC	GC	TT													0.10188679245283	27	0.00131594018804135	2.23724461158509	2.50494909502262	2.12376118925831	0.0524259106482342	0.532036613272311	15	acgggcctgggctgtgcgctGctagccgcccacgccgtggt					rs34924760		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	GC	GC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	SOAT2-91	NM_003578	exon6	c.C610T	p.A202A	GCGCTGCTAGCCG	.	14	7	0	0	C|0.787;T|0.213	0	0	0	0	0	TT	53509340	GC	TT	53509339	2	4	30	1	0	0	0	0	0	0	0	1	14946	1306	46	3		3	SOAT2	12	53509339	Silent	DNP	GC	TCGA-OR-A5K9-01A-11D-A29I-10	882124	53509339	80342556	162	5266										
CSAD	51380	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	53555170	53555170	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.10188679245283	27	0.00131594018804135	2.23724461158509	2.50494909502262	2.12376118925831	0.0524259106482342	0.532036613272311	15	actgaccaggaacggcacagCaccctgttgccaaaatgtag	10	12	0	1	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	CSAD-91	NM_015989	exon11	c.G787A	p.A263T	GCACAGCACCCTG	.	356	99	213	0	.	0	0	0	0	0	T	53555170	C	T	53555170	3	4	30	1	0	0	0	0	1	0	0	0	3931	710	25	3	803	3	CSAD	12	53555170	Missense_Mutation	SNP	C	TCGA-OR-A5K9-01A-11D-A29I-10	45831	53555170	80296725	163	5267										
NFE2	4778	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	54686192	54686192	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.10188679245283	27	0.00131594018804135	2.23724461158509	2.50494909502262	2.12376118925831	0.0524259106482342	0.532036613272311	15	ccatcttggtcccccggggcAcaaggaagatggtcccatcg	12	14	1	1	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	NFE2-226	NM_001261461	exon4	c.T1088C	p.V363A	CGGGGCACAAGGA	.	259	84	177	1	.	0	0	0	0	0	G	54686192	A	G	54686192	3	3	30	1	0	0	0	0	1	0	0	0	10395	159	6	4	37	4	NFE2	12	54686192	Missense_Mutation	SNP	A	TCGA-OR-A5K9-01A-11D-A29I-10	1131022	54686192	79165703	164	5268										
ESYT1	23344	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	56522161	56522161	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.10188679245283	27	0.00131594018804135	2.23724461158509	2.50494909502262	2.12376118925831	0.0524259106482342	0.532036613272311	15	ccatggaccagccctctgctCcctccgaccccactgaccag	7	21	1	1	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	ESYT1-95	NM_015292	exon1	c.C58G	p.P20A	TCTGCTCCCTCCG	.	76	17	13	0	.	51	43	8	0	0	G	56522161	C	G	56522161	3	3	30	1	0	0	0	0	1	0	0	0	5277	855	30	3	60	3	ESYT1	12	56522161	Missense_Mutation	SNP	C	TCGA-OR-A5K9-01A-11D-A29I-10	1835969	56522161	77329734	165	5269										
BAZ2A	11176	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	57005765	57005765	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.10188679245283	27	0.00131594018804135	2.23724461158509	2.50494909502262	2.12376118925831	0.0524259106482342	0.532036613272311	15	actgctgaggaagctggagaGaccactgagaagactgctgg	15	8	0	4	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	BAZ2A-22	NM_013449	exon6	c.C1407T	p.V469V	TGGAGAGACCACT	.	359	44	108	0	.	114	49	65	0	0	A	57005765	G	A	57005765	2	1	30	1	0	0	0	0	0	0	0	1	1332	929	33	3		3	BAZ2A	12	57005765	Silent	SNP	G	TCGA-OR-A5K9-01A-11D-A29I-10	483604	57005765	76846130	166	5270										
SLC16A7	9194	broad.mit.edu;bcgsc.ca	37	chr12	60165060	60165060	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.10188679245283	27	0.00131594018804135	2.23724461158509	2.50494909502262	2.12376118925831	0.0524259106482342	0.532036613272311	15	gccggtggtgatagcaggagGcttattatgctgtcttggaa	15	6	1	1	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	SLC16A7-91	NM_001270622	exon4	c.G278T	p.G93V	CAGGAGGCTTATT	.	720	47	261	1	.	2	2	0	0	0	T	60165060	G	T	60165060	3	4	30	1	0	0	0	0	1	0	0	0	14448	1203	42	3	284	3	SLC16A7	12	60165060	Missense_Mutation	SNP	G	TCGA-OR-A5K9-01A-11D-A29I-10	3159295	60165060	73686835	167	5271										
AMDHD1	144193	hgsc.bcm.edu	37	chr12	96337183	96337183	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.10188679245283	27	0.00131594018804135	2.23724461158509	2.50494909502262	2.12376118925831	0.0524259106482342	0.532036613272311	15	cggcgcgaggcgacatggcaAgcggccacagcctcctgctg	15	15	0	0	rs7955450	byfrequency	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	AMDHD1-90	NM_152435	exon1	c.A7G	p.S3G	ATGGCAAGCGGCC	.	19	19	0	0	A|0.273;G|0.727	1	0	1	0	0	G	96337183	A	G	96337183	3	3	30	1	0	0	0	0	1	0	0	0	567	72	3	4	9	4	AMDHD1	12	96337183	Missense_Mutation	SNP	A	TCGA-OR-A5K9-01A-11D-A29I-10	36172123	96337183	37514712	168	5272										
AMDHD1	144193	hgsc.bcm.edu	37	chr12	96337225	96337225	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.10188679245283	27	0.00131594018804135	2.23724461158509	2.50494909502262	2.12376118925831	0.0524259106482342	0.532036613272311	15	agaacgcgcagcaagtggtgCtggtgtgcgcccgcggcgag	18	11	0	1	rs1436121	byfrequency	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	AMDHD1-90	NM_152435	exon1	c.C49T	p.L17L	GTGGTGCTGGTGT	.	27	27	0	0	C|0.752;T|0.248	1	0	1	0	0	T	96337225	C	T	96337225	2	4	30	1	0	0	0	0	0	0	0	1	567	796	28	3		3	AMDHD1	12	96337225	Silent	SNP	C	TCGA-OR-A5K9-01A-11D-A29I-10	42	96337225	37514670	169	5273										
ATP8A2	51761	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr13	26138139	26138139	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.10188679245283	27	0.00131594018804135	2.23724461158509	2.50494909502262	2.12376118925831	0.0524259106482342	0.532036613272311	15	tcctgtgactttgatgacccCaggctgttgaagaacattga	10	9	0	6	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	ATP8A2-138	NM_016529	exon16	c.C1443A	p.P481P	TGACCCCAGGCTG	.	92	36	78	0	.	0	0	0	0	0	A	26138139	C	A	26138139	2	1	30	1	0	0	0	0	0	0	0	1	1194	581	21	3		3	ATP8A2	13	26138139	Silent	SNP	C	TCGA-OR-A5K9-01A-11D-A29I-10		26138139	89031739	170	5274										
DCLK1	9201	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr13	36410236	36410236	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.10188679245283	27	0.00131594018804135	2.23724461158509	2.50494909502262	2.12376118925831	0.0524259106482342	0.532036613272311	15	ttcttccgactttatatcgtTctgttattgtagctggaatc	7	8	2	0	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	DCLK1-826	NM_004734	exon8	c.A1163G	p.E388G	TATCGTTCTGTTA	.	128	47	158	0	.	0	0	0	0	0	C	36410236	T	C	36410236	3	2	30	1	0	0	0	0	1	0	0	0	4297	1783	62	4	1070	4	DCLK1	13	36410236	Missense_Mutation	SNP	T	TCGA-OR-A5K9-01A-11D-A29I-10	10272097	36410236	78759642	171	5275										
MYO16	23026	hgsc.bcm.edu	37	chr13	109792825	109792825	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.10188679245283	27	0.00131594018804135	2.23724461158509	2.50494909502262	2.12376118925831	0.0524259106482342	0.532036613272311	15	gtgcgcgctgcccccggcggCgcctccgggtgacgaggacg	18	16	0	1	rs199777754		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	MYO16-142	NM_001198950	exon32	c.C4265T	p.A1422V	CGGCGGCGCCTCC	.	4	4	0	0	.	0	0	0	0	0	T	109792825	C	T	109792825	3	4	30	1	0	0	0	0	1	0	0	0	10092	768	27	1	4321	1	MYO16	13	109792825	Missense_Mutation	SNP	C	TCGA-OR-A5K9-01A-11D-A29I-10	73382589	109792825	5377053	172	5276										
ING1	3621	hgsc.bcm.edu	37	chr13	111368316	111368316	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.10188679245283	27	0.00131594018804135	2.23724461158509	2.50494909502262	2.12376118925831	0.0524259106482342	0.532036613272311	15	gacagtttcaggccgcatctCtgctgacccgagggtggggc	15	12	2	1	rs9555726	byfrequency	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	ING1-515	NM_005537	exon1	c.C526T	p.L176L	GCATCTCTGCTGA	.	8	8	0	0	C|0.372;T|0.628	5	0	5	0	0	T	111368316	C	T	111368316	2	4	30	1	0	0	0	0	0	0	0	1	7756	912	32	3		3	ING1	13	111368316	Silent	SNP	C	TCGA-OR-A5K9-01A-11D-A29I-10	1575491	111368316	3801562	173	5277										
DDHD1	80821	hgsc.bcm.edu	37	chr14	53619681	53619681	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.10188679245283	27	0.00131594018804135	2.23724461158509	2.50494909502262	2.12376118925831	0.0524259106482342	0.532036613272311	15	gccgtcgtccgggtccccgcCgggcaggtgctcgaagcagc	16	16	0	0	rs61985140		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	DDHD1-92	NM_001160147	exon1	c.G136A	p.G46S	CCCCGCCGGGCAG	.	48	37	2	0	C|0.993;T|0.007	1	0	1	0	0	T	53619681	C	T	53619681	3	4	30	1	0	0	0	0	1	0	0	0	4332	652	23	1	2643	1	DDHD1	14	53619681	Missense_Mutation	SNP	C	TCGA-OR-A5K9-01A-11D-A29I-10		53619681	53729859	174	5278										
EXD2	55218	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr14	69704629	69704629	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.10188679245283	27	0.00131594018804135	2.23724461158509	2.50494909502262	2.12376118925831	0.0524259106482342	0.532036613272311	15	cagaggagatgcttcaagagGctgccagcctggagaccagg	15	10	1	4	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	.	NM_001193361	exon8	c.G1630C	p.A544P	CAAGAGGCTGCCA	.	255	68	182	0	.	6	2	4	0	0	C	69704629	G	C	69704629	3	2	30	1	0	0	0	0	1	0	0	0	5311	1203	42	3	1277	3	EXD2	14	69704629	Missense_Mutation	SNP	G	TCGA-OR-A5K9-01A-11D-A29I-10	16084948	69704629	37644911	175	5279										
ADAM21	8747	ucsc.edu;bcgsc.ca	37	chr14	70924643	70924643	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.10188679245283	27	0.00131594018804135	2.23724461158509	2.50494909502262	2.12376118925831	0.0524259106482342	0.532036613272311	15	taaaaataagtggcctcactTatgaaattgaacccatcagg	7	8	2	2	rs78114303	byfrequency	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	ADAM21-92	NM_003813	exon2	c.T427C	p.Y143H	CTCACTTATGAAA	.	45	11	53	1	T|0.987;C|0.013	0	0	0	0	0	C	70924643	T	C	70924643	3	2	30	1	0	0	0	0	1	0	0	0	243	1754	61	4	429	4	ADAM21	14	70924643	Missense_Mutation	SNP	T	TCGA-OR-A5K9-01A-11D-A29I-10	1220014	70924643	36424897	176	5280										
ISM2	145501	hgsc.bcm.edu	37	chr14	77965094	77965094	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.10188679245283	27	0.00131594018804135	2.23724461158509	2.50494909502262	2.12376118925831	0.0524259106482342	0.532036613272311	15	cagcagcgccgccagcagcaGcacgcagaggaggagcccgg	16	15	0	1	rs12431905	byfrequency	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	ISM2-91	NM_199296	exon1	c.C43T	p.L15L	GCAGCAGCACGCA	.	11	7	0	0	G|0.934;A|0.066	1	0	1	0	0	A	77965094	G	A	77965094	2	1	30	1	0	0	0	0	0	0	0	1	7882	962	34	3		3	ISM2	14	77965094	Silent	SNP	G	TCGA-OR-A5K9-01A-11D-A29I-10	7040451	77965094	29384446	177	5281										
BCL11B	64919	hgsc.bcm.edu	37	chr14	99641147	99641147	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.10188679245283	27	0.00131594018804135	2.23724461158509	2.50494909502262	2.12376118925831	0.0524259106482342	0.532036613272311	15	gttgagcccggggctgggcaGcggcgcgggcttgcgcggga	22	11	0	1	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	BCL11B-1147	NM_138576	exon4	c.C2026T	p.L676L	TGGGCAGCGGCGC	.	25	11	0	0	.	0	0	0	0	0	A	99641147	G	A	99641147	2	1	30	1	0	0	0	0	0	0	0	1	1365	962	34	3		3	BCL11B	14	99641147	Silent	SNP	G	TCGA-OR-A5K9-01A-11D-A29I-10	21676053	99641147	7708393	178	5282										
CYP46A1	10858	bcgsc.ca	37	chr14	100157470	100157470	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.10188679245283	27	0.00131594018804135	2.23724461158509	2.50494909502262	2.12376118925831	0.0524259106482342	0.532036613272311	15	aaaaggatgaggttggtggcCgtgtgctccaagatgtgttt	15	5	0	2	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	CYP46A1-90	NM_006668	exon2	c.C172T	p.R58C	GGTGGCCGTGTGC	.	325	12	225	2	.	0	0	0	0	0	T	100157470	C	T	100157470	3	4	30	1	0	0	0	0	1	0	0	0	4188	652	23	1	178	1	CYP46A1	14	100157470	Missense_Mutation	SNP	C	TCGA-OR-A5K9-01A-11D-A29I-10	516323	100157470	7192070	179	5283										
RTL1	388015	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr14	101348688	101348688	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.10188679245283	27	0.00131594018804135	2.23724461158509	2.50494909502262	2.12376118925831	0.0524259106482342	0.532036613272311	15	ggtaggggaagacgaattcgAtgaagtttcgcagagatagc	15	5	0	3	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	RTL1-46	NM_001134888	exon1	c.T2438A	p.I813N	AATTCGATGAAGT	.	138	34	116	0	.	0	0	0	0	0	T	101348688	A	T	101348688	3	4	30	1	0	0	0	0	1	0	0	0	13759	333	12	5	1642	5	RTL1	14	101348688	Missense_Mutation	SNP	A	TCGA-OR-A5K9-01A-11D-A29I-10	1191218	101348688	6000852	180	5284										
RTL1	388015	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr14	101349080	101349080	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.10188679245283	27	0.00131594018804135	2.23724461158509	2.50494909502262	2.12376118925831	0.0524259106482342	0.532036613272311	15	gctgctttccacacatcttcGgtgcggtgcccgttcacgct	10	15	2	0	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	RTL1-46	NM_001134888	exon1	c.C2046T	p.T682T	ATCTTCGGTGCGG	.	233	70	153	0	.	0	0	0	0	0	A	101349080	G	A	101349080	2	1	30	1	0	0	0	0	0	0	0	1	13759	1103	39	1		1	RTL1	14	101349080	Silent	SNP	G	TCGA-OR-A5K9-01A-11D-A29I-10	392	101349080	6000460	181	5285										
RYR3	6263	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	34064256	34064256	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.10188679245283	27	0.00131594018804135	2.23724461158509	2.50494909502262	2.12376118925831	0.0524259106482342	0.532036613272311	15	cattcccgaacgcagattaaAggcgtttctcagaatattaa	7	9	1	2	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	RYR3-520	NM_001243996	exon63	c.A8952T	p.K2984N	GATTAAAGGCGTT	.	74	68	169	1	.	0	0	0	0	0	T	34064256	A	T	34064256	3	4	30	1	0	0	0	0	1	0	0	0	13805	69	3	5	9202	5	RYR3	15	34064256	Missense_Mutation	SNP	A	TCGA-OR-A5K9-01A-11D-A29I-10		34064256	68467136	182	5286										
LACTB	114294	hgsc.bcm.edu	37	chr15	63414083	63414083	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.10188679245283	27	0.00131594018804135	2.23724461158509	2.50494909502262	2.12376118925831	0.0524259106482342	0.532036613272311	15	gagacgccatgtaccggctcAtgtcagcagtgactgcccgg	13	13	2	2	rs34317102	byfrequency	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	LACTB-90	NM_171846	exon1	c.A13C	p.M5L	CGGCTCATGTCAG	.	6	6	0	0	A|0.226;C|0.774	0	0	0	0	0	C	63414083	A	C	63414083	3	2	30	1	0	0	0	0	1	0	0	0	8619	217	8	5	15	5	LACTB	15	63414083	Missense_Mutation	SNP	A	TCGA-OR-A5K9-01A-11D-A29I-10	29349827	63414083	39117309	183	5287										
SCAPER	49855	broad.mit.edu	37	chr15	76998254	76998255	+	Frame_Shift_Ins	INS	-	-	T													0.10188679245283	27	0.00131594018804135	2.23724461158509	2.50494909502262	2.12376118925831	0.0524259106482342	0.532036613272311	15	tatccttaccttgagctgaaINStttttttctgtaactcttcc					novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	SCAPER-137	NM_020843	exon17	c.2237_2238insA	p.I746fs	AGCTGAATTTTTT	.	6	2	13	0	.	0	0	0	0	0	T	76998255	-	T	76998254	7	5	30	1	0	1	1	0	0	0	0	0	13913	101	4	0	2025	0	SCAPER	15	76998254	Frame_Shift_Ins	INS	-	TCGA-OR-A5K9-01A-11D-A29I-10	13584171	76998254	25533138	184	5288										
FANCI	55215	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr15	89790933	89790933	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.10188679245283	27	0.00131594018804135	2.23724461158509	2.50494909502262	2.12376118925831	0.0524259106482342	0.532036613272311	15	aaacagcagacaaactgcaaGaatttcttcaaaccctgaga	6	10	2	3	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	FANCI-92	NM_001113378	exon2	c.G55A	p.E19K	CTGCAAGAATTTC	.	65	25	88	0	.	1	0	1	0	0	A	89790933	G	A	89790933	3	1	30	1	0	0	0	0	1	0	0	0	5688	943	33	3	57	3	FANCI	15	89790933	Missense_Mutation	SNP	G	TCGA-OR-A5K9-01A-11D-A29I-10	12792679	89790933	12740459	185	5289										
KIF7	374654	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr15	90176983	90176983	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.10188679245283	27	0.00131594018804135	2.23724461158509	2.50494909502262	2.12376118925831	0.0524259106482342	0.532036613272311	15	ttctgctccgtctcctcgcgAagccgcctctgcagctgtcc	9	18	3	0	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	KIF7-523	NM_198525	exon12	c.T2526C	p.L842L	CTCGCGAAGCCGC	.	85	36	29	0	.	3	2	1	0	0	G	90176983	A	G	90176983	2	3	30	1	0	0	0	0	0	0	0	1	8330	233	9	4		4	KIF7	15	90176983	Silent	SNP	A	TCGA-OR-A5K9-01A-11D-A29I-10	386050	90176983	12354409	186	5290										
ZNF710	374655	hgsc.bcm.edu	37	chr15	90610914	90610914	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.10188679245283	27	0.00131594018804135	2.23724461158509	2.50494909502262	2.12376118925831	0.0524259106482342	0.532036613272311	15	ccgaaccccgaggccggagcTgaacgtggccccatatgacc	12	16	0	2	rs201968429	byfrequency	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	ZNF710-90	NM_198526	exon2	c.T545G	p.L182R	CGGAGCTGAACGT	.	23	14	2	0	T|0.998;G|0.002	6	5	1	0	0	G	90610914	T	G	90610914	3	3	30	1	0	0	0	0	1	0	0	0	18152	1580	55	5	547	5	ZNF710	15	90610914	Missense_Mutation	SNP	T	TCGA-OR-A5K9-01A-11D-A29I-10	433931	90610914	11920478	187	5291										
C16orf11	146325	hgsc.bcm.edu	37	chr16	614727	614727	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.10188679245283	27	0.00131594018804135	2.23724461158509	2.50494909502262	2.12376118925831	0.0524259106482342	0.532036613272311	15	tgaggacggggatccaggcgGccctgagacccccggccctg	16	15	0	2	rs200682205		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	C16orf11-23	NM_145270	exon3	c.G1136A	p.G379D	CAGGCGGCCCTGA	.	14	8	0	0	.	0	0	0	0	0	A	614727	G	A	614727	3	1	30	1	0	0	0	0	1	0	0	0	1814	1203	42	3	1142	3	C16orf11	16	614727	Missense_Mutation	SNP	G	TCGA-OR-A5K9-01A-11D-A29I-10		614727	89740026	188	5292										
EME2	197342	hgsc.bcm.edu	37	chr16	1823444	1823444	+	Silent	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.10188679245283	27	0.00131594018804135	2.23724461158509	2.50494909502262	2.12376118925831	0.0524259106482342	0.532036613272311	15	ctgctgcggccggagcaggtCctgaagcgcctcgcggtgtg	17	13	0	1	rs761065		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	EME2-229	NM_001257370	exon1	c.C216G	p.V72V	GCAGGTCCTGAAG	.	10	10	0	0	C|0.615;G|0.385	0	0	0	0	0	G	1823444	C	G	1823444	2	3	30	1	0	0	0	0	0	0	0	1	5102	842	30	3		3	EME2	16	1823444	Silent	SNP	C	TCGA-OR-A5K9-01A-11D-A29I-10	1208717	1823444	88531309	189	5293										
ZNF598	90850	hgsc.bcm.edu	37	chr16	2059674	2059674	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.10188679245283	27	0.00131594018804135	2.23724461158509	2.50494909502262	2.12376118925831	0.0524259106482342	0.532036613272311	15	acagcacgcagctcccgcctTcccgctcaggagctgccgcc	10	20	1	0	rs71384660		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	ZNF598-432	NM_178167	exon2	c.A74G	p.E25G	CCGCCTTCCCGCT	.	12	12	0	0	T|0.007;C|0.993	6	0	6	0	0	C	2059674	T	C	2059674	3	2	30	1	0	0	0	0	1	0	0	0	18065	1770	62	4	2689	4	ZNF598	16	2059674	Missense_Mutation	SNP	T	TCGA-OR-A5K9-01A-11D-A29I-10	236230	2059674	88295079	190	5294										
SLC9A3R2	9351	hgsc.bcm.edu	37	chr16	2086500	2086500	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.10188679245283	27	0.00131594018804135	2.23724461158509	2.50494909502262	2.12376118925831	0.0524259106482342	0.532036613272311	15	ccgcgcccaggaccggctcaTtgaggtaccggcccaccagg	13	17	1	1	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	SLC9A3R2-23	NM_004785	exon3	c.T590C	p.I197T	GGCTCATTGAGGT	.	96	27	4	0	.	0	0	0	0	0	C	2086500	T	C	2086500	3	2	30	1	0	0	0	0	1	0	0	0	14750	1493	52	4	600	4	SLC9A3R2	16	2086500	Missense_Mutation	SNP	T	TCGA-OR-A5K9-01A-11D-A29I-10	26826	2086500	88268253	191	5295										
MGRN1	23295	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr16	4731691	4731691	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.10188679245283	27	0.00131594018804135	2.23724461158509	2.50494909502262	2.12376118925831	0.0524259106482342	0.532036613272311	15	ggcatctcggacggcctgtcCcaggccagctgtcccctcgc	12	18	1	0	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	MGRN1-92	NM_015246	exon13	c.C1272T	p.S424S	CCTGTCCCAGGCC	.	121	73	58	0	.	45	17	28	0	0	T	4731691	C	T	4731691	2	4	30	1	0	0	0	0	0	0	0	1	9587	610	22	3		3	MGRN1	16	4731691	Silent	SNP	C	TCGA-OR-A5K9-01A-11D-A29I-10	2645191	4731691	85623062	192	5296										
PDILT	204474	broad.mit.edu	37	chr16	20410472	20410472	+	Frame_Shift_Del	DEL	C	C	-													0.10188679245283	27	0.00131594018804135	2.23724461158509	2.50494909502262	2.12376118925831	0.0524259106482342	0.532036613272311	15	cagcatctgggtcaggccagCgggcgttagcactaggagac					novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	PDILT-153	NM_174924	exon2	c.151delG	p.A51fs	GGCCAGCGGGCGT	.	287	21	174	0	.	0	0	0	0	0	-	20410472	C	-	20410472	7	5	30	1	0	1	0	1	0	0	0	0	11703	768	27	0	1647	0	PDILT	16	20410472	Frame_Shift_Del	DEL	C	TCGA-OR-A5K9-01A-11D-A29I-10	15678781	20410472	69944281	193	5297										
PRKCB	5579	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr16	23847557	23847557	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.10188679245283	27	0.00131594018804135	2.23724461158509	2.50494909502262	2.12376118925831	0.0524259106482342	0.532036613272311	15	aggagagcaccgtgcgcttcGcccgcaaaggcgccctccgg	14	16	0	1	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	PRKCB-1530	NM_212535	exon1	c.G61T	p.A21S	CGCTTCGCCCGCA	.	345	134	73	0	.	0	0	0	0	0	T	23847557	G	T	23847557	3	4	30	1	0	0	0	0	1	0	0	0	12540	1087	38	2	63	2	PRKCB	16	23847557	Missense_Mutation	SNP	G	TCGA-OR-A5K9-01A-11D-A29I-10	3437085	23847557	66507196	194	5298										
CACNG3	10368	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr16	24268165	24268165	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.10188679245283	27	0.00131594018804135	2.23724461158509	2.50494909502262	2.12376118925831	0.0524259106482342	0.532036613272311	15	atgaccattgcagtgggcacGgactactggttatattccag	11	9	0	1	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	CACNG3-90	NM_006539	exon1	c.G90A	p.T30T	GGGCACGGACTAC	.	244	62	200	0	.	0	0	0	0	0	A	24268165	G	A	24268165	2	1	30	1	0	0	0	0	0	0	0	1	2564	1103	39	1		1	CACNG3	16	24268165	Silent	SNP	G	TCGA-OR-A5K9-01A-11D-A29I-10	420608	24268165	66086588	195	5299										
ITGAM	3684	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr16	31288327	31288327	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.10188679245283	27	0.00131594018804135	2.23724461158509	2.50494909502262	2.12376118925831	0.0524259106482342	0.532036613272311	15	aaggagaaaagcaccttcatCaacatgaccagagtggattc	9	9	2	3	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	ITGAM-226	NM_000632	exon11	c.C1170T	p.I390I	CTTCATCAACATG	.	161	14	127	0	.	0	0	0	0	0	T	31288327	C	T	31288327	2	4	30	1	0	0	0	0	0	0	0	1	7908	816	29	3		3	ITGAM	16	31288327	Silent	SNP	C	TCGA-OR-A5K9-01A-11D-A29I-10	7020162	31288327	59066426	196	5300										
ABCC11	85320	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr16	48201459	48201459	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.10188679245283	27	0.00131594018804135	2.23724461158509	2.50494909502262	2.12376118925831	0.0524259106482342	0.532036613272311	15	agttcagcacagtggtgacaCggtgggcaatgacgagcacg	15	9	1	2	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	ABCC11-95	NM_033151	exon28	c.G4004C	p.R1335P	GTGACACGGTGGG	.	446	127	272	1	.	0	0	0	0	0	G	48201459	C	G	48201459	3	3	30	1	0	0	0	0	1	0	0	0	51	536	19	2	152	2	ABCC11	16	48201459	Missense_Mutation	SNP	C	TCGA-OR-A5K9-01A-11D-A29I-10	16913132	48201459	42153294	197	5301										
CCDC102A	92922	hgsc.bcm.edu	37	chr16	57562804	57562804	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.10188679245283	27	0.00131594018804135	2.23724461158509	2.50494909502262	2.12376118925831	0.0524259106482342	0.532036613272311	15	ggcagtgcagtccgaccaccGgcgcatggtcttctccatct	11	15	3	0	rs12935069		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	CCDC102A-91	NM_033212	exon2	c.C286T	p.R96W	ACCACCGGCGCAT	.	6	6	0	0	G|0.001;A|0.999	0	0	0	0	0	A	57562804	G	A	57562804	3	1	30	1	0	0	0	0	1	0	0	0	2742	1115	39	1	1398	1	CCDC102A	16	57562804	Missense_Mutation	SNP	G	TCGA-OR-A5K9-01A-11D-A29I-10	9361345	57562804	32791949	198	5302										
CNTNAP4	85445	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	76555137	76555137	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.10188679245283	27	0.00131594018804135	2.23724461158509	2.50494909502262	2.12376118925831	0.0524259106482342	0.532036613272311	15	gatgtatctttcttttttaaGacaacagcttcatctggggt	8	7	4	1	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	CNTNAP4-70	NM_138994	exon15	c.G2247C	p.K749N	TTTTAAGACAACA	.	35	7	32	0	.	0	0	0	0	0	C	76555137	G	C	76555137	3	2	30	1	0	0	0	0	1	0	0	0	3655	933	33	3	2541	3	CNTNAP4	16	76555137	Missense_Mutation	SNP	G	TCGA-OR-A5K9-01A-11D-A29I-10	18992333	76555137	13799616	199	5303										
ZFPM1	161882	hgsc.bcm.edu	37	chr16	88599697	88599705	+	In_Frame_Del	DEL	AGCCTCTGG	AGCCTCTGG	-													0.10188679245283	27	0.00131594018804135	2.23724461158509	2.50494909502262	2.12376118925831	0.0524259106482342	0.532036613272311	15	caacggagaggccagagcggAgcctctggcccagaatggag					novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	AGCCTCTGG	AGCCTCTGG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	ZFPM1-90	NM_153813	exon10	c.1331_1339del	p.444_447del	GAGCGGAGCCTCT	.	16	0	0	0	.	0	0	0	0	0	-	88599705	AGCCTCTGG	-	88599697	7	5	30	1	0	1	0	1	0	0	0	0	17694	304	11	0	1369	0	ZFPM1	16	88599697	In_Frame_Del	DEL	AGCCTCTGG	TCGA-OR-A5K9-01A-11D-A29I-10	12044560	88599697	1755056	200	5304										
RPL13	6137	hgsc.bcm.edu	37	chr16	89627671	89627671	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.10188679245283	27	0.00131594018804135	2.23724461158509	2.50494909502262	2.12376118925831	0.0524259106482342	0.532036613272311	15	gccaaggcgcgccgcatcgcCccgcgccccgcgtcgggtcc	14	21	0	0	rs174035	bycluster;byfrequency;by1000genomes	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	RPL13-90	NM_001243131	exon3	c.C141T	p.A47A	CATCGCCCCGCGC	.	8	7	0	0	C|0.846;T|0.154	2143	1256	882	2	3	T	89627671	C	T	89627671	2	4	30	1	0	0	0	0	0	0	0	1	13594	610	22	3		3	RPL13	16	89627671	Silent	SNP	C	TCGA-OR-A5K9-01A-11D-A29I-10	1027974	89627671	727082	201	5305										
ZZEF1	23140	hgsc.bcm.edu	37	chr17	4046101	4046101	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.10188679245283	27	0.00131594018804135	2.23724461158509	2.50494909502262	2.12376118925831	0.0524259106482342	0.532036613272311	15	ggccgggggtcgtgcccgagAccgcggcccagtcctggtgt	18	14	0	1	rs1454121		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	ZZEF1-93	NM_015113	exon1	c.T89C	p.V30A	CCCGAGACCGCGG	.	9	9	0	0	A|0.188;G|0.812	0	0	0	0	0	G	4046101	A	G	4046101	3	3	30	1	0	0	0	0	1	0	0	0	18292	275	10	4	9016	4	ZZEF1	17	4046101	Missense_Mutation	SNP	A	TCGA-OR-A5K9-01A-11D-A29I-10		4046101	77149109	202	5306										
GLTPD2	388323	hgsc.bcm.edu	37	chr17	4693342	4693342	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.10188679245283	27	0.00131594018804135	2.23724461158509	2.50494909502262	2.12376118925831	0.0524259106482342	0.532036613272311	15	ggcgcgctgggaggcccggaCgcgggcgtgcagtgcagcga	21	12	0	0	rs35910358		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	GLTPD2-68	NM_001014985	exon4	c.C627A	p.D209E	CCCGGACGCGGGC	.	6	6	0	0	C|0.015;A|0.985	0	0	0	0	0	A	4693342	C	A	4693342	3	1	30	1	0	0	0	0	1	0	0	0	6493	535	19	2	641	2	GLTPD2	17	4693342	Missense_Mutation	SNP	C	TCGA-OR-A5K9-01A-11D-A29I-10	647241	4693342	76501868	203	5307										
MYH8	4626	bcgsc.ca	37	chr17	10296486	10296486	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.10188679245283	27	0.00131594018804135	2.23724461158509	2.50494909502262	2.12376118925831	0.0524259106482342	0.532036613272311	15	tcactttggagttgggaaacGtcattttctaatttcttctt	7	7	5	0	rs33969260	byfrequency	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	MYH8-101	NM_002472	exon36	c.C5208T	p.D1736D	GGAAACGTCATTT	.	96	5	143	0	G|0.826;A|0.174	0	0	0	0	0	A	10296486	G	A	10296486	2	1	30	1	0	0	0	0	0	0	0	1	10069	1136	40	1		1	MYH8	17	10296486	Silent	SNP	G	TCGA-OR-A5K9-01A-11D-A29I-10	5603144	10296486	70898724	204	5308										
IGFBP4	3487	hgsc.bcm.edu	37	chr17	38600092	38600092	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.10188679245283	27	0.00131594018804135	2.23724461158509	2.50494909502262	2.12376118925831	0.0524259106482342	0.532036613272311	15	ccctgctccgaggagaagctGgcgcgctgccgcccccccgt	13	19	0	1	rs598892	byfrequency	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	IGFBP4-522	NM_001552	exon1	c.G105A	p.L35L	GAAGCTGGCGCGC	.	16	16	0	0	G|0.645;A|0.355	1	0	1	0	0	A	38600092	G	A	38600092	2	1	30	1	0	0	0	0	0	0	0	1	7602	1335	47	3		3	IGFBP4	17	38600092	Silent	SNP	G	TCGA-OR-A5K9-01A-11D-A29I-10	28303606	38600092	42595118	205	5309										
CNTD1	124817	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	40957779	40957779	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.10188679245283	27	0.00131594018804135	2.23724461158509	2.50494909502262	2.12376118925831	0.0524259106482342	0.532036613272311	15	tcttgaatttcctccaggctCtaggctatctacacactaaa	5	12	3	1	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	CNTD1-90	NM_173478	exon4	c.C457G	p.L153V	CAGGCTCTAGGCT	.	60	37	87	0	.	0	0	0	0	0	G	40957779	C	G	40957779	3	3	30	1	0	0	0	0	1	0	0	0	3641	912	32	3	471	3	CNTD1	17	40957779	Missense_Mutation	SNP	C	TCGA-OR-A5K9-01A-11D-A29I-10	2357687	40957779	40237431	206	5310										
EPN3	55040	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	48614027	48614027	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.10188679245283	27	0.00131594018804135	2.23724461158509	2.50494909502262	2.12376118925831	0.0524259106482342	0.532036613272311	15	tgacccctggggcccccctaGttcgctcatgtccgagatcg	11	16	1	2	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	EPN3-91	NM_017957	exon2	c.G110T	p.S37I	CCCCTAGTTCGCT	.	130	109	129	1	.	0	0	0	0	0	T	48614027	G	T	48614027	3	4	30	1	0	0	0	0	1	0	0	0	5200	1029	36	3	112	3	EPN3	17	48614027	Missense_Mutation	SNP	G	TCGA-OR-A5K9-01A-11D-A29I-10	7656248	48614027	32581183	207	5311										
EPN3	55040	bcgsc.ca	37	chr17	48619272	48619272	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.10188679245283	27	0.00131594018804135	2.23724461158509	2.50494909502262	2.12376118925831	0.0524259106482342	0.532036613272311	15	ggcaggccgacgctaaaccaGatgcgcaccggctcgccggc	14	16	0	1	rs111678638	byfrequency	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	EPN3-91	NM_017957	exon10	c.G1653A	p.Q551Q	AAACCAGATGCGC	.	22	22	9	0	G|0.933;A|0.067	0	0	0	0	0	A	48619272	G	A	48619272	2	1	30	1	0	0	0	0	0	0	0	1	5200	933	33	3		3	EPN3	17	48619272	Silent	SNP	G	TCGA-OR-A5K9-01A-11D-A29I-10	5245	48619272	32575938	208	5312										
EPN3	55040	hgsc.bcm.edu	37	chr17	48619290	48619290	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.10188679245283	27	0.00131594018804135	2.23724461158509	2.50494909502262	2.12376118925831	0.0524259106482342	0.532036613272311	15	cagatgcgcaccggctcgccGgcgctgggcctggcaggcgg	18	15	0	1	rs112657244	byfrequency	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	EPN3-91	NM_017957	exon10	c.G1671A	p.P557P	CTCGCCGGCGCTG	.	13	12	0	0	G|0.946;A|0.054	0	0	0	0	0	A	48619290	G	A	48619290	2	1	30	1	0	0	0	0	0	0	0	1	5200	1103	39	1		1	EPN3	17	48619290	Silent	SNP	G	TCGA-OR-A5K9-01A-11D-A29I-10	18	48619290	32575920	209	5313										
C17orf70	80233	broad.mit.edu;bcgsc.ca	37	chr17	79517591	79517591	+	Frame_Shift_Del	DEL	T	T	-													0.10188679245283	27	0.00131594018804135	2.23724461158509	2.50494909502262	2.12376118925831	0.0524259106482342	0.532036613272311	15	gaccaaaggccaccaggcagTcacagtgcacatcctcgtca					novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	C17orf70-92	NM_025161	exon3	c.929delA	p.D310fs	AGGCAGTCACAGT	.	74	9	75	0	.	0	0	0	0	0	-	79517591	T	-	79517591	7	5	30	1	0	1	0	1	0	0	0	0	1882	1667	58	0	1744	0	C17orf70	17	79517591	Frame_Shift_Del	DEL	T	TCGA-OR-A5K9-01A-11D-A29I-10	30898301	79517591	1677619	210	5314										
COLEC12	81035	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr18	346782	346782	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.10188679245283	27	0.00131594018804135	2.23724461158509	2.50494909502262	2.12376118925831	0.0524259106482342	0.532036613272311	15	ttcatatcctccagggtgtcGttgttggctttggccaacgc	11	11	1	0	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	COLEC12-92	NM_130386	exon5	c.C840T	p.N280N	GGTGTCGTTGTTG	.	65	20	67	0	.	0	0	0	0	0	A	346782	G	A	346782	2	1	30	1	0	0	0	0	0	0	0	1	3718	1136	40	1		1	COLEC12	18	346782	Silent	SNP	G	TCGA-OR-A5K9-01A-11D-A29I-10		346782	77730466	211	5315										
SMAD7	4092	hgsc.bcm.edu	37	chr18	46476680	46476680	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.10188679245283	27	0.00131594018804135	2.23724461158509	2.50494909502262	2.12376118925831	0.0524259106482342	0.532036613272311	15	gctgtccgtcgccccttctcCccgcagctcgcctcctcctc	7	23	1	0	rs144204026		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	SMAD7-414	NM_005904	exon1	c.G115A	p.G39R	CTTCTCCCCGCAG	.	75	50	3	0	C|0.996;T|0.004	5	2	3	0	0	T	46476680	C	T	46476680	3	4	30	1	0	0	0	0	1	0	0	0	14798	632	22	3	1181	3	SMAD7	18	46476680	Missense_Mutation	SNP	C	TCGA-OR-A5K9-01A-11D-A29I-10	46129898	46476680	31600568	212	5316										
ARID3A	1820	hgsc.bcm.edu	37	chr19	929678	929678	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.10188679245283	27	0.00131594018804135	2.23724461158509	2.50494909502262	2.12376118925831	0.0524259106482342	0.532036613272311	15	gacgaggacagagagcccgaGagtgcccggatgcagcgggc	18	11	0	2	rs3826948		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	ARID3A-90	NM_005224	exon2	c.G150A	p.E50E	GCCCGAGAGTGCC	.	4	4	0	0	T|0.495;C|0.504	2	0	2	0	0	A	929678	G	A	929678	2	1	30	1	0	0	0	0	0	0	0	1	916	933	33	3		3	ARID3A	19	929678	Silent	SNP	G	TCGA-OR-A5K9-01A-11D-A29I-10		929678	58199305	213	5317										
ABCA7	10347	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	chr19	1046951	1046951	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.10188679245283	27	0.00131594018804135	2.23724461158509	2.50494909502262	2.12376118925831	0.0524259106482342	0.532036613272311	15	gggctcagccgcgcggtgctCtggctaggctggttcctcag	16	13	3	0	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	ABCA7-98	NM_019112	exon14	c.C1773T	p.L591L	GGTGCTCTGGCTA	.	634	89	11	0	.	6	3	3	0	0	T	1046951	C	T	1046951	2	4	30	1	0	0	0	0	0	0	0	1	37	900	32	3		3	ABCA7	19	1046951	Silent	SNP	C	TCGA-OR-A5K9-01A-11D-A29I-10	117273	1046951	58082032	214	5318										
TCF3	6929	hgsc.bcm.edu	37	chr19	1619339	1619339	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.10188679245283	27	0.00131594018804135	2.23724461158509	2.50494909502262	2.12376118925831	0.0524259106482342	0.532036613272311	15	cctgcgtgccgcccgcccagTgacatggggccggtgaaacc	14	16	0	2	rs8140	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	TCF3-721	NM_003200	exon15	c.A1302G	p.S434S	GCCCAGTGACATG	.	16	6	0	0	T|0.403;C|0.597	77	38	39	0	0	C	1619339	T	C	1619339	2	2	30	1	0	0	0	0	0	0	0	1	15731	1683	59	4		4	TCF3	19	1619339	Silent	SNP	T	TCGA-OR-A5K9-01A-11D-A29I-10	572388	1619339	57509644	215	5319										
ANKRD24	170961	hgsc.bcm.edu	37	chr19	4217956	4217956	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.10188679245283	27	0.00131594018804135	2.23724461158509	2.50494909502262	2.12376118925831	0.0524259106482342	0.532036613272311	15	ctggagctgcggggccgggcAgccagtctggagcaggaggt	20	10	1	0	rs6510794	byfrequency	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	ANKRD24-68	NM_133475	exon18	c.A2799G	p.A933A	CCGGGCAGCCAGT	.	11	4	0	0	A|0.541;G|0.459	0	0	0	0	0	G	4217956	A	G	4217956	2	3	30	1	0	0	0	0	0	0	0	1	653	175	7	4		4	ANKRD24	19	4217956	Silent	SNP	A	TCGA-OR-A5K9-01A-11D-A29I-10	2598617	4217956	54911027	216	5320										
RFX2	5990	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	6047473	6047473	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.10188679245283	27	0.00131594018804135	2.23724461158509	2.50494909502262	2.12376118925831	0.0524259106482342	0.532036613272311	15	agggacgcagagccacggacGctggcgaatccgctccaccc	13	16	0	1	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	RFX2-156	NM_134433	exon2	c.C35T	p.A12V	ACGGACGCTGGCG	.	217	65	18	0	.	1	1	0	0	0	A	6047473	G	A	6047473	3	1	30	1	0	0	0	0	1	0	0	0	13298	1087	38	1	2204	1	RFX2	19	6047473	Missense_Mutation	SNP	G	TCGA-OR-A5K9-01A-11D-A29I-10	1829517	6047473	53081510	217	5321										
RPS28	6234	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	8386554	8386554	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.10188679245283	27	0.00131594018804135	2.23724461158509	2.50494909502262	2.12376118925831	0.0524259106482342	0.532036613272311	15	ctccaggtcaccaaggtcctGggcaggaccggttctcaggg	14	13	2	0	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	RPS28-46	NM_001031	exon2	c.G54C	p.L18L	GGTCCTGGGCAGG	.	80	33	59	0	.	2034	1388	645	1	0	C	8386554	G	C	8386554	2	2	30	1	0	0	0	0	0	0	0	1	13676	1335	47	3		3	RPS28	19	8386554	Silent	SNP	G	TCGA-OR-A5K9-01A-11D-A29I-10	2339081	8386554	50742429	218	5322										
KANK3	256949	hgsc.bcm.edu	37	chr19	8399628	8399628	+	Silent	SNP	A	A	G													0.10188679245283	27	0.00131594018804135	2.23724461158509	2.50494909502262	2.12376118925831	0.0524259106482342	0.532036613272311	15	accccgcgctggtgctccagActggcgcgcagcagctctag					rs710949	byfrequency	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	KANK3-90	NM_198471	exon3	c.T1083C	p.S361S	CTCCAGACTGGCG	.	4	4	0	0	A|0.411;G|0.589	0	0	0	0	0	G	8399628	A	G	8399628	2	3	30	1	0	0	0	0	0	0	0	1	7999	272	10	4		4	KANK3	19	8399628	Silent	SNP	A	TCGA-OR-A5K9-01A-11D-A29I-10	13074	8399628	50729355	219	5323	44	2								
KANK3	256949	hgsc.bcm.edu	37	chr19	8399635	8399635	+	Missense_Mutation	SNP	C	C	T													0.10188679245283	27	0.00131594018804135	2.23724461158509	2.50494909502262	2.12376118925831	0.0524259106482342	0.532036613272311	15	gctggtgctccagactggcgCgcagcagctctagctcgcgc					rs890853	byfrequency	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	KANK3-90	NM_198471	exon3	c.G1076A	p.R359H	CTGGCGCGCAGCA	.	4	4	0	0	C|0.769;T|0.231	0	0	0	0	0	T	8399635	C	T	8399635	3	4	30	1	0	0	0	0	1	0	0	0	7999	768	27	1	1425	1	KANK3	19	8399635	Missense_Mutation	SNP	C	TCGA-OR-A5K9-01A-11D-A29I-10	7	8399635	50729348	220	5324	44	2								
ZNF846	162993	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	9869036	9869036	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.10188679245283	27	0.00131594018804135	2.23724461158509	2.50494909502262	2.12376118925831	0.0524259106482342	0.532036613272311	15	cttccatgtcctataaggtgTgaggaattactgaaggcttt	10	7	0	2	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	ZNF846-23	NM_001077624	exon6	c.A717G	p.S239S	AAGGTGTGAGGAA	.	90	28	72	0	.	0	0	0	0	0	C	9869036	T	C	9869036	2	2	30	1	0	0	0	0	0	0	0	1	18229	1683	59	4		4	ZNF846	19	9869036	Silent	SNP	T	TCGA-OR-A5K9-01A-11D-A29I-10	1469401	9869036	49259947	221	5325										
ZNF653	115950	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr19	11594864	11594864	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.10188679245283	27	0.00131594018804135	2.23724461158509	2.50494909502262	2.12376118925831	0.0524259106482342	0.532036613272311	15	gcctgtcactcactgcagggGggtctcgccggtgtgggtgc	17	12	3	0	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	ZNF653-90	NM_138783	exon8	c.C1663T	p.P555S	GCAGGGGGGTCTC	.	269	115	45	0	.	0	0	0	0	0	A	11594864	G	A	11594864	3	1	30	1	0	0	0	0	1	0	0	0	18103	1232	43	3	192	3	ZNF653	19	11594864	Missense_Mutation	SNP	G	TCGA-OR-A5K9-01A-11D-A29I-10	1725828	11594864	47534119	222	5326										
CCDC105	126402	hgsc.bcm.edu	37	chr19	15133926	15133926	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.10188679245283	27	0.00131594018804135	2.23724461158509	2.50494909502262	2.12376118925831	0.0524259106482342	0.532036613272311	15	gcagcaagagcagcgcggacCcctagtgaccccagcgtccc	12	17	0	2	rs8112667	byfrequency	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	CCDC105-91	NM_173482	exon7	c.C1495A	p.P499T	GCGGACCCCTAGT	.	15	9	0	0	C|0.671;A|0.329	0	0	0	0	0	A	15133926	C	A	15133926	3	1	30	1	0	0	0	0	1	0	0	0	2746	623	22	3	1521	3	CCDC105	19	15133926	Missense_Mutation	SNP	C	TCGA-OR-A5K9-01A-11D-A29I-10	3539062	15133926	43995057	223	5327										
AKAP8L	26993	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr19	15508345	15508345	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.10188679245283	27	0.00131594018804135	2.23724461158509	2.50494909502262	2.12376118925831	0.0524259106482342	0.532036613272311	15	cctcaccctgggtcagatccTggtctctgtagatttggtgg	12	11	3	2	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	AKAP8L-1	NM_014371	exon11	c.A1391C	p.Q464P	AGATCCTGGTCTC	.	580	45	133	0	.	4	3	1	0	0	G	15508345	T	G	15508345	3	3	30	1	0	0	0	0	1	0	0	0	458	1580	55	5	565	5	AKAP8L	19	15508345	Missense_Mutation	SNP	T	TCGA-OR-A5K9-01A-11D-A29I-10	374419	15508345	43620638	224	5328										
OR10H5	284433	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	15905273	15905273	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.10188679245283	27	0.00131594018804135	2.23724461158509	2.50494909502262	2.12376118925831	0.0524259106482342	0.532036613272311	15	acaacgtgctcatgagcctgCggggctgcacctgccgggtg	15	13	1	1	rs145808850	byfrequency	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	OR10H5-69	NM_001004466	exon1	c.C415T	p.R139W	AGCCTGCGGGGCT	.	1865	215	342	0	A|0.001;C|0.999;T|0.000	0	0	0	0	0	T	15905273	C	T	15905273	3	4	30	1	0	0	0	0	1	0	0	0	10938	759	27	1	417	1	OR10H5	19	15905273	Missense_Mutation	SNP	C	TCGA-OR-A5K9-01A-11D-A29I-10	396928	15905273	43223710	225	5329										
UPF1	5976	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr19	18943028	18943028	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.10188679245283	27	0.00131594018804135	2.23724461158509	2.50494909502262	2.12376118925831	0.0524259106482342	0.532036613272311	15	ccggaggcaccatgagcgtgGaggcgtacgggcccagctcg	17	13	0	1	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	UPF1-91	NM_002911	exon1	c.G10C	p.E4Q	AGCGTGGAGGCGT	.	181	113	69	0	.	3	1	2	0	0	C	18943028	G	C	18943028	3	2	30	1	0	0	0	0	1	0	0	0	17041	1175	41	3	12	3	UPF1	19	18943028	Missense_Mutation	SNP	G	TCGA-OR-A5K9-01A-11D-A29I-10	3037755	18943028	40185955	226	5330										
YJEFN3	374887	broad.mit.edu	37	chr19	19648155	19648155	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.10188679245283	27	0.00131594018804135	2.23724461158509	2.50494909502262	2.12376118925831	0.0524259106482342	0.532036613272311	15	cgcagagaccggcagcgattCggaggacgggctgcggcctg	18	12	0	1	rs200289592		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	YJEFN3-90	NM_198537	exon7	c.C722T	p.S241L	GCGATTCGGAGGA	.	84	46	17	1	.	4	2	2	0	0	T	19648155	C	T	19648155	3	4	30	1	0	0	0	0	1	0	0	0	17522	893	31	1	748	1	YJEFN3	19	19648155	Missense_Mutation	SNP	C	TCGA-OR-A5K9-01A-11D-A29I-10	705127	19648155	39480828	227	5331										
RGS9BP	388531	hgsc.bcm.edu	37	chr19	33167455	33167455	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.10188679245283	27	0.00131594018804135	2.23724461158509	2.50494909502262	2.12376118925831	0.0524259106482342	0.532036613272311	15	tggaagcggacatgcgacgcGcgctggagctgggcgccgcg	19	12	0	0	rs259290	byfrequency	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	RGS9BP-90	NM_207391	exon1	c.G286T	p.A96S	CGACGCGCGCTGG	.	7	5	0	0	G|0.540;T|0.460	0	0	0	0	0	T	33167455	G	T	33167455	3	4	30	1	0	0	0	0	1	0	0	0	13349	1087	38	2	288	2	RGS9BP	19	33167455	Missense_Mutation	SNP	G	TCGA-OR-A5K9-01A-11D-A29I-10	13519300	33167455	25961528	228	5332										
ZNF607	84775	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	38189550	38189550	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.10188679245283	27	0.00131594018804135	2.23724461158509	2.50494909502262	2.12376118925831	0.0524259106482342	0.532036613272311	15	ccagtatgaactctgcgatgTatagtgagtttatggctata	10	6	1	2	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	ZNF607-90	NM_032689	exon5	c.A1482G	p.I494M	GCGATGTATAGTG	.	133	35	95	0	.	0	0	0	0	0	C	38189550	T	C	38189550	3	2	30	1	0	0	0	0	1	0	0	0	18070	1628	57	4	612	4	ZNF607	19	38189550	Missense_Mutation	SNP	T	TCGA-OR-A5K9-01A-11D-A29I-10	5022095	38189550	20939433	229	5333										
CAPN12	147968	hgsc.bcm.edu	37	chr19	39226927	39226927	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.10188679245283	27	0.00131594018804135	2.23724461158509	2.50494909502262	2.12376118925831	0.0524259106482342	0.532036613272311	15	gcagccggggcaggagcgcaTggctgcgcggggaatcccag	19	12	0	0	rs62120074		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	CAPN12-91	NM_144691	exon12	c.A1406G	p.H469R	AGCGCATGGCTGC	.	8	4	0	0	T|0.939;C|0.061	1	0	1	0	0	C	39226927	T	C	39226927	3	2	30	1	0	0	0	0	1	0	0	0	2631	1464	51	4	793	4	CAPN12	19	39226927	Missense_Mutation	SNP	T	TCGA-OR-A5K9-01A-11D-A29I-10	1037377	39226927	19902056	230	5334										
APOE	348	hgsc.bcm.edu	37	chr19	45412079	45412079	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.10188679245283	27	0.00131594018804135	2.23724461158509	2.50494909502262	2.12376118925831	0.0524259106482342	0.532036613272311	15	atgccgatgacctgcagaagCgcctggcagtgtaccaggcc	13	13	0	2	rs7412	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	APOE-90	NM_000041	exon4	c.C526T	p.R176C	CAGAAGCGCCTGG	.	12	8	2	0	C|0.933;T|0.067	3294	798	2494	1	1	T	45412079	C	T	45412079	3	4	30	1	0	0	0	0	1	0	0	0	802	768	27	1	536	1	APOE	19	45412079	Missense_Mutation	SNP	C	TCGA-OR-A5K9-01A-11D-A29I-10	6185152	45412079	13716904	231	5335										
ERCC2	2068	hgsc.bcm.edu	37	chr19	45867259	45867259	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.10188679245283	27	0.00131594018804135	2.23724461158509	2.50494909502262	2.12376118925831	0.0524259106482342	0.532036613272311	15	ctcaccctgcagcacttcgtCgggcagcacggggttggcca	13	15	1	0	rs1799793	byfrequency	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	ERCC2-848	NM_000400	exon10	c.G934A	p.D312N	CTTCGTCGGGCAG	.	18	18	0	0	C|0.804;T|0.196	24	0	24	0	0	T	45867259	C	T	45867259	3	4	30	1	0	0	0	0	1	0	0	0	5226	884	31	1	1461	1	ERCC2	19	45867259	Missense_Mutation	SNP	C	TCGA-OR-A5K9-01A-11D-A29I-10	455180	45867259	13261724	232	5336										
PTGIR	5739	hgsc.bcm.edu	37	chr19	47127324	47127324	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.10188679245283	27	0.00131594018804135	2.23724461158509	2.50494909502262	2.12376118925831	0.0524259106482342	0.532036613272311	15	tcggtggccgccagtccggtCaccagcaccgcgaaggccga	14	16	1	0	rs2229128	byfrequency	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	PTGIR-522	NM_000960	exon2	c.G159C	p.V53V	TCCGGTCACCAGC	.	17	6	1	0	C|0.254;G|0.746	0	0	0	0	0	G	47127324	C	G	47127324	2	3	30	1	0	0	0	0	0	0	0	1	12784	813	29	3		3	PTGIR	19	47127324	Silent	SNP	C	TCGA-OR-A5K9-01A-11D-A29I-10	1260065	47127324	12001659	233	5337										
SAE1	10055	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	47673134	47673134	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.10188679245283	27	0.00131594018804135	2.23724461158509	2.50494909502262	2.12376118925831	0.0524259106482342	0.532036613272311	15	gactggagcagtgagaaagcAaaggctgctctgaagcgcac	14	9	1	2	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	SAE1-227	NM_001145714	exon6	c.A687G	p.A229A	GAAAGCAAAGGCT	.	164	37	106	0	.	153	107	46	0	0	G	47673134	A	G	47673134	2	3	30	1	0	0	0	0	0	0	0	1	13840	117	5	4		4	SAE1	19	47673134	Silent	SNP	A	TCGA-OR-A5K9-01A-11D-A29I-10	545810	47673134	11455849	234	5338										
SLC8A2	6543	hgsc.bcm.edu	37	chr19	47951116	47951116	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.10188679245283	27	0.00131594018804135	2.23724461158509	2.50494909502262	2.12376118925831	0.0524259106482342	0.532036613272311	15	ccgcacgcgtcctcgtagtgCacgccgccgccgcgcgccgt	13	20	0	0	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	SLC8A2-94	NM_015063	exon4	c.G1713A	p.V571V	GTAGTGCACGCCG	.	44	18	2	0	.	0	0	0	0	0	T	47951116	C	T	47951116	2	4	30	1	0	0	0	0	0	0	0	1	14742	697	25	3		3	SLC8A2	19	47951116	Silent	SNP	C	TCGA-OR-A5K9-01A-11D-A29I-10	277982	47951116	11177867	235	5339										
LRRC4B	94030	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	51022585	51022585	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.10188679245283	27	0.00131594018804135	2.23724461158509	2.50494909502262	2.12376118925831	0.0524259106482342	0.532036613272311	15	gctgggcagcccgttgaaggCgcccacctcgatcttgcgca	13	15	1	1	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	LRRC4B-205	NM_001080457	exon3	c.G385A	p.A129T	TGAAGGCGCCCAC	.	224	58	84	0	.	0	0	0	0	0	T	51022585	C	T	51022585	3	4	30	1	0	0	0	0	1	0	0	0	9034	768	27	1	1760	1	LRRC4B	19	51022585	Missense_Mutation	SNP	C	TCGA-OR-A5K9-01A-11D-A29I-10	3071469	51022585	8106398	236	5340										
TMEM86B	255043	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	55739581	55739581	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.10188679245283	27	0.00131594018804135	2.23724461158509	2.50494909502262	2.12376118925831	0.0524259106482342	0.532036613272311	15	gggacgaaggctgccggccaGatgaggcaagcgtcccccac	15	14	0	2	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	TMEM86B-90	NM_173804	exon2	c.C276G	p.I92M	CGGCCAGATGAGG	.	196	49	101	0	.	16	13	3	0	0	C	55739581	G	C	55739581	3	2	30	1	0	0	0	0	1	0	0	0	16246	932	33	3	412	3	TMEM86B	19	55739581	Missense_Mutation	SNP	G	TCGA-OR-A5K9-01A-11D-A29I-10	4716996	55739581	3389402	237	5341										
ZNF628	89887	hgsc.bcm.edu	37	chr19	55993260	55993260	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.10188679245283	27	0.00131594018804135	2.23724461158509	2.50494909502262	2.12376118925831	0.0524259106482342	0.532036613272311	15	gcgccgcccccgccccgggtAccgcctccgcggccccgccc	12	26	0	0	rs34864744		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	ZNF628-22	NM_033113	exon3	c.A700G	p.T234A	CCGGGTACCGCCT	.	4	4	0	0	A|0.270;G|0.730	0	0	0	0	0	G	55993260	A	G	55993260	3	3	30	1	0	0	0	0	1	0	0	0	18089	391	14	4	690	4	ZNF628	19	55993260	Missense_Mutation	SNP	A	TCGA-OR-A5K9-01A-11D-A29I-10	253679	55993260	3135723	238	5342										
ZFP28	140612	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	57065768	57065768	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.10188679245283	27	0.00131594018804135	2.23724461158509	2.50494909502262	2.12376118925831	0.0524259106482342	0.532036613272311	15	ccttacaaatgtgatgtatgTcacaaatccttcaggtatgg	8	8	2	1	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	ZFP28-91	NM_020828	exon8	c.T1614C	p.C538C	TGTATGTCACAAA	.	56	8	61	0	.	8	8	0	0	0	C	57065768	T	C	57065768	2	2	30	1	0	0	0	0	0	0	0	1	17679	1673	58	4		4	ZFP28	19	57065768	Silent	SNP	T	TCGA-OR-A5K9-01A-11D-A29I-10	1072508	57065768	2063215	239	5343										
ITCH	83737	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr20	33080396	33080396	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.10188679245283	27	0.00131594018804135	2.23724461158509	2.50494909502262	2.12376118925831	0.0524259106482342	0.532036613272311	15	cagtaggaggatttgctgatCtcatgggtatgtatacagga	13	5	1	1	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	ITCH-659	NM_001257137	exon24	c.C2533G	p.L845V	GCTGATCTCATGG	.	100	34	82	0	.	0	0	0	0	0	G	33080396	C	G	33080396	3	3	30	1	0	0	0	0	1	0	0	0	7889	913	32	3	2492	3	ITCH	20	33080396	Missense_Mutation	SNP	C	TCGA-OR-A5K9-01A-11D-A29I-10		33080396	29945124	240	5344										
PTPRT	11122	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr20	40713387	40713387	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.10188679245283	27	0.00131594018804135	2.23724461158509	2.50494909502262	2.12376118925831	0.0524259106482342	0.532036613272311	15	tgccacttctccagtcgtcgGaccactttgagcagagagcg	11	13	1	2	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	PTPRT-664	NM_133170	exon30	c.C4128T	p.V1376V	TCGTCGGACCACT	.	348	95	219	0	.	0	0	0	0	0	A	40713387	G	A	40713387	2	1	30	1	0	0	0	0	0	0	0	1	12847	1161	41	3		3	PTPRT	20	40713387	Silent	SNP	G	TCGA-OR-A5K9-01A-11D-A29I-10	7632991	40713387	22312133	241	5345										
DNTTIP1	116092	hgsc.bcm.edu	37	chr20	44420682	44420682	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.10188679245283	27	0.00131594018804135	2.23724461158509	2.50494909502262	2.12376118925831	0.0524259106482342	0.532036613272311	15	gccgagcagccgcggggaccTagcggggccgagaggggcgg	22	12	0	1	rs2664591	byfrequency	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	DNTTIP1-91	NM_052951	exon1	c.T39C	p.P13P	GGGACCTAGCGGG	.	6	6	0	0	T|0.311;C|0.689	8	0	8	0	0	C	44420682	T	C	44420682	2	2	30	1	0	0	0	0	0	0	0	1	4692	1509	53	4		4	DNTTIP1	20	44420682	Silent	SNP	T	TCGA-OR-A5K9-01A-11D-A29I-10	3707295	44420682	18604838	242	5346										
KRTAP11-1	337880	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr21	32253737	32253737	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.10188679245283	27	0.00131594018804135	2.23724461158509	2.50494909502262	2.12376118925831	0.0524259106482342	0.532036613272311	15	gcaaacagatgccgcccaggCagtcagcatcagtggtggaa	13	11	2	1	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	KRTAP11-1-91	NM_175858	exon1	c.G107T	p.C36F	CCCAGGCAGTCAG	.	353	82	185	0	.	0	0	0	0	0	A	32253737	C	A	32253737	3	1	30	1	0	0	0	0	1	0	0	0	8538	710	25	3	388	3	KRTAP11-1	21	32253737	Missense_Mutation	SNP	C	TCGA-OR-A5K9-01A-11D-A29I-10		32253737	15876158	243	5347										
HUNK	30811	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr21	33371313	33371313	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.10188679245283	27	0.00131594018804135	2.23724461158509	2.50494909502262	2.12376118925831	0.0524259106482342	0.532036613272311	15	catgcagcctctggggagccCcaattgtgtgaaaagccgag	13	11	1	1	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	HUNK-334	NM_014586	exon11	c.C1961G	p.P654R	GGAGCCCCAATTG	.	39	11	43	0	.	0	0	0	0	0	G	33371313	C	G	33371313	3	3	30	1	0	0	0	0	1	0	0	0	7479	623	22	3	2003	3	HUNK	21	33371313	Missense_Mutation	SNP	C	TCGA-OR-A5K9-01A-11D-A29I-10	1117576	33371313	14758582	244	5348										
KCNJ6	3763	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr21	38997475	38997475	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.10188679245283	27	0.00131594018804135	2.23724461158509	2.50494909502262	2.12376118925831	0.0524259106482342	0.532036613272311	15	agggcactaaactttggattCattctccaggtttgccacat	8	10	2	0	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	KCNJ6-91	NM_002240	exon4	c.G1258T	p.E420X	TGGATTCATTCTC	.	70	5	58	0	.	0	0	0	0	0	A	38997475	C	A	38997475	4	1	30	1	0	0	0	0	0	1	0	0	8076	835	29	3	17	3	KCNJ6	21	38997475	Nonsense_Mutation	SNP	C	TCGA-OR-A5K9-01A-11D-A29I-10	5626162	38997475	9132420	245	5349										
KRTAP10-9	386676	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr21	46047395	46047395	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.10188679245283	27	0.00131594018804135	2.23724461158509	2.50494909502262	2.12376118925831	0.0524259106482342	0.532036613272311	15	agcaggcctgctgcgtgcccGtctgctgcaagcctgtgtgc	14	14	1	0	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	.	NM_198690	exon1	c.G307A	p.V103I	GTGCCCGTCTGCT	.	509	133	113	0	.	0	0	0	0	0	A	46047395	G	A	46047395	3	1	30	1	0	0	0	0	1	0	0	0	8537	1145	40	1	309	1	KRTAP10-9	21	46047395	Missense_Mutation	SNP	G	TCGA-OR-A5K9-01A-11D-A29I-10	7049920	46047395	2082500	246	5350										
KRTAP10-10	353333	ucsc.edu	37	chr21	46057634	46057634	+	Silent	SNP	T	T	C													0.10188679245283	27	0.00131594018804135	2.23724461158509	2.50494909502262	2.12376118925831	0.0524259106482342	0.532036613272311	15	tgctgtgtgcctgtctgctgTgtgcccgtctgctgcgtgcc					rs61029972	bycluster;byfrequency	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	KRTAP10-10-90	NM_181688	exon1	c.T300C	p.C100C	CTGCTGTGTGCCC	.	346	113	137	1	T|0.860;C|0.140	0	0	0	0	0	C	46057634	T	C	46057634	2	2	30	1	0	0	0	0	0	0	0	1	8527	1702	59	4		4	KRTAP10-10	21	46057634	Silent	SNP	T	TCGA-OR-A5K9-01A-11D-A29I-10	10239	46057634	2072261	247	5351	45	2								
KRTAP10-10	353333	ucsc.edu	37	chr21	46057640	46057640	+	Silent	SNP	C	C	T													0.10188679245283	27	0.00131594018804135	2.23724461158509	2.50494909502262	2.12376118925831	0.0524259106482342	0.532036613272311	15	gtgcctgtctgctgtgtgccCgtctgctgcgtgcccgtctg					rs78817801	byfrequency	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	KRTAP10-10-90	NM_181688	exon1	c.C306T	p.P102P	TGTGCCCGTCTGC	.	365	71	145	0	C|0.983;T|0.017	0	0	0	0	0	T	46057640	C	T	46057640	2	4	30	1	0	0	0	0	0	0	0	1	8527	639	23	1		1	KRTAP10-10	21	46057640	Silent	SNP	C	TCGA-OR-A5K9-01A-11D-A29I-10	6	46057640	2072255	248	5352	45	2								
SCARF2	91179	hgsc.bcm.edu	37	chr22	20780091	20780091	+	Silent	SNP	C	C	G													0.10188679245283	27	0.00131594018804135	2.23724461158509	2.50494909502262	2.12376118925831	0.0524259106482342	0.532036613272311	15	gtcgcctcctcgggcagcccCggggggcgcggcgttgggtc					rs77189880	bycluster;byfrequency;by1000genomes	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	SCARF2-341	NM_153334	exon11	c.G2187C	p.P729P	CAGCCCCGGGGGG	.	9	9	0	0	C|0.138;G|0.862	0	0	0	0	0	G	20780091	C	G	20780091	2	3	30	1	0	0	0	0	0	0	0	1	13919	639	23	2		2	SCARF2	22	20780091	Silent	SNP	C	TCGA-OR-A5K9-01A-11D-A29I-10		20780091	30524475	249	5353	46	2								
SCARF2	91179	hgsc.bcm.edu	37	chr22	20780097	20780097	+	Silent	SNP	G	G	C													0.10188679245283	27	0.00131594018804135	2.23724461158509	2.50494909502262	2.12376118925831	0.0524259106482342	0.532036613272311	15	tcctcgggcagccccgggggGcgcggcgttgggtcgcgggt					rs759609	bycluster;byfrequency;by1000genomes	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	SCARF2-341	NM_153334	exon11	c.C2181G	p.R727R	CGGGGGGCGCGGC	.	10	10	0	0	G|0.826;C|0.174	0	0	0	0	0	C	20780097	G	C	20780097	2	2	30	1	0	0	0	0	0	0	0	1	13919	1190	42	3		3	SCARF2	22	20780097	Silent	SNP	G	TCGA-OR-A5K9-01A-11D-A29I-10	6	20780097	30524469	250	5354	46	2								
LZTR1	8216	broad.mit.edu	37	chr22	21343966	21344002	+	In_Frame_Del	DEL	GAGGAGGTGAGGGGCGTGGGGAGCCAGGGCGCAGGTA	GAGGAGGTGAGGGGCGTGGGGAGCCAGGGCGCAGGTA	-													0.10188679245283	27	0.00131594018804135	2.23724461158509	2.50494909502262	2.12376118925831	0.0524259106482342	0.532036613272311	15	accgagagctcacctgctggGaggaggtgaggggcgtgggg					novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	LZTR1-280	NM_006767	exon7	c.646_651del	p.216_217del	TGCTGGGAGGAGG	.	55	7	41	0	.	0	0	0	0	0	-	21344002	GAGGAGGTGAGGGGCGTGGGGAGCCAGGGCGCAGGTA	-	21343966	7	5	30	1	0	1	0	1	0	0	0	0	9165	1175	41	0	672	0	LZTR1	22	21343966	In_Frame_Del	DEL	GAGGAGGTGAGGGGCGTGGGGAGCCAGGGCGCAGGTA	TCGA-OR-A5K9-01A-11D-A29I-10	563869	21343966	29960600	251	5355										
BCR	613	hgsc.bcm.edu	37	chr22	23655084	23655084	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.10188679245283	27	0.00131594018804135	2.23724461158509	2.50494909502262	2.12376118925831	0.0524259106482342	0.532036613272311	15	ctctttccagataacaaggaCgtgtcggtgatgatgagcga	12	8	1	4	rs75389254		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	BCR-1349	NM_004327	exon20	c.C3333T	p.D1111D	CAAGGACGTGTCG	.	6	6	2	0	.	0	0	0	0	0	T	23655084	C	T	23655084	2	4	30	1	0	0	0	0	0	0	0	1	1389	535	19	1		1	BCR	22	23655084	Silent	SNP	C	TCGA-OR-A5K9-01A-11D-A29I-10	2311118	23655084	27649482	252	5356										
MN1	4330	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr22	28192787	28192787	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.10188679245283	27	0.00131594018804135	2.23724461158509	2.50494909502262	2.12376118925831	0.0524259106482342	0.532036613272311	15	gttctggggtttggccttctCccagggcgccaacgtcttgt	13	12	3	0	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	MN1-993	NM_002430	exon1	c.G3745A	p.E1249K	CCTTCTCCCAGGG	.	176	71	85	0	.	2	2	0	0	0	T	28192787	C	T	28192787	3	4	30	1	0	0	0	0	1	0	0	0	9701	864	30	3	225	3	MN1	22	28192787	Missense_Mutation	SNP	C	TCGA-OR-A5K9-01A-11D-A29I-10	4537703	28192787	23111779	253	5357										
OSBP2	23762	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr22	31137254	31137254	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.10188679245283	27	0.00131594018804135	2.23724461158509	2.50494909502262	2.12376118925831	0.0524259106482342	0.532036613272311	15	tgctgaccagtggggccaggAgctaccacctcaaggccagc	13	14	1	1	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	OSBP2-114	NM_030758	exon2	c.A751T	p.S251C	GCCAGGAGCTACC	.	116	53	89	0	.	6	5	1	0	0	T	31137254	A	T	31137254	3	4	30	1	0	0	0	0	1	0	0	0	11303	304	11	5	757	5	OSBP2	22	31137254	Missense_Mutation	SNP	A	TCGA-OR-A5K9-01A-11D-A29I-10	2944467	31137254	20167312	254	5358										
UPK3A	7380	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr22	45681905	45681905	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.10188679245283	27	0.00131594018804135	2.23724461158509	2.50494909502262	2.12376118925831	0.0524259106482342	0.532036613272311	15	ctgtggccttggaaaagcctCtctgcatgtttgacagcaaa	10	10	1	1	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	UPK3A-90	NM_006953	exon2	c.C136A	p.L46I	AAGCCTCTCTGCA	.	208	103	188	0	.	0	0	0	0	0	A	45681905	C	A	45681905	3	1	30	1	0	0	0	0	1	0	0	0	17048	913	32	3	142	3	UPK3A	22	45681905	Missense_Mutation	SNP	C	TCGA-OR-A5K9-01A-11D-A29I-10	14544651	45681905	5622661	255	5359										
NLGN4X	57502	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chrX	5821337	5821337	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.10188679245283	27	0.00131594018804135	2.23724461158509	2.50494909502262	2.12376118925831	0.0524259106482342	0.532036613272311	15	aggtgggggagccgtactgcGcgtgcaggtcggcggtggcc	21	10	0	0	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	NLGN4X-195	NM_181332	exon5	c.C1382T	p.A461V	TACTGCGCGTGCA	.	197	99	170	0	.	0	0	0	0	0	A	5821337	G	A	5821337	3	1	30	1	0	0	0	0	1	0	0	0	10493	1087	38	1	1076	1	NLGN4X	23	5821337	Missense_Mutation	SNP	G	TCGA-OR-A5K9-01A-11D-A29I-10		5821337	149449223	256	5360										
FAM9A	171482	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	8763192	8763192	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.10188679245283	27	0.00131594018804135	2.23724461158509	2.50494909502262	2.12376118925831	0.0524259106482342	0.532036613272311	15	cttctccttctcctcctcctCctccttcttctccttcttct	0	21	6	0	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	FAM9A-130	NM_174951	exon7	c.G758T	p.G253V	CCTCCTCCTCCTT	.	58	35	57	0	.	0	0	0	0	0	A	8763192	C	A	8763192	3	1	30	1	0	0	0	0	1	0	0	0	5678	855	30	3	252	3	FAM9A	23	8763192	Missense_Mutation	SNP	C	TCGA-OR-A5K9-01A-11D-A29I-10	2941855	8763192	146507368	257	5361										
FRMPD4	9758	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	12734821	12734821	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.10188679245283	27	0.00131594018804135	2.23724461158509	2.50494909502262	2.12376118925831	0.0524259106482342	0.532036613272311	15	tgcagaaaacactgatgacgCggaggacgaggacgaggtga	16	7	0	4	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	FRMPD4-263	NM_014728	exon15	c.C2243T	p.A748V	ATGACGCGGAGGA	.	178	92	108	1	.	0	0	0	0	0	T	12734821	C	T	12734821	3	4	30	1	0	0	0	0	1	0	0	0	6078	768	27	1	2301	1	FRMPD4	23	12734821	Missense_Mutation	SNP	C	TCGA-OR-A5K9-01A-11D-A29I-10	3971629	12734821	142535739	258	5362										
DMD	1756	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	31196848	31196848	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.10188679245283	27	0.00131594018804135	2.23724461158509	2.50494909502262	2.12376118925831	0.0524259106482342	0.532036613272311	15	tagcccattcggggatgcttCgcaaaataccttttggttcg	10	10	0	0	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	DMD-265	NM_004006	exon70	c.G10161A	p.A3387A	ATGCTTCGCAAAA	.	139	62	260	2	.	10	0	10	0	0	T	31196848	C	T	31196848	2	4	30	1	0	0	0	0	0	0	0	1	4591	871	31	1		1	DMD	23	31196848	Silent	SNP	C	TCGA-OR-A5K9-01A-11D-A29I-10	18462027	31196848	124073712	259	5363										
WDR45	11152	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	48935337	48935337	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.10188679245283	27	0.00131594018804135	2.23724461158509	2.50494909502262	2.12376118925831	0.0524259106482342	0.532036613272311	15	acttgggactactaccaccgCccaccaaggccagaaggttg	10	14	0	1	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	WDR45-131	NM_007075	exon5	c.G200A	p.G67D	CCACCGCCCACCA	.	111	59	129	0	.	30	0	30	0	0	T	48935337	C	T	48935337	3	4	30	1	0	0	0	0	1	0	0	0	17335	739	26	3	917	3	WDR45	23	48935337	Missense_Mutation	SNP	C	TCGA-OR-A5K9-01A-11D-A29I-10	17738489	48935337	106335223	260	5364										
MAGIX	79917	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	49021301	49021301	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.10188679245283	27	0.00131594018804135	2.23724461158509	2.50494909502262	2.12376118925831	0.0524259106482342	0.532036613272311	15	ctctggtcatttctctgtggAgctggttcgcggttacgcag	13	10	3	0	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	MAGIX-108	NM_024859	exon4	c.A380T	p.E127V	CTGTGGAGCTGGT	.	95	39	101	0	.	0	0	0	0	0	T	49021301	A	T	49021301	3	4	30	1	0	0	0	0	1	0	0	0	9221	304	11	5	434	5	MAGIX	23	49021301	Missense_Mutation	SNP	A	TCGA-OR-A5K9-01A-11D-A29I-10	85964	49021301	106249259	261	5365										
KIAA2022	340533	broad.mit.edu	37	chrX	73961529	73961529	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.10188679245283	27	0.00131594018804135	2.23724461158509	2.50494909502262	2.12376118925831	0.0524259106482342	0.532036613272311	15	atcagatgggagttgggtatCttgcatggagtcatacagga	14	5	3	1	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	KIAA2022-183	NM_001008537	exon3	c.G2863C	p.D955H	GGGTATCTTGCAT	.	172	5	214	0	.	0	0	0	0	0	G	73961529	C	G	73961529	3	3	30	1	0	0	0	0	1	0	0	0	8290	913	32	3	1695	3	KIAA2022	23	73961529	Missense_Mutation	SNP	C	TCGA-OR-A5K9-01A-11D-A29I-10	24940228	73961529	81309031	262	5366										
ARL13A	392509	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chrX	100229150	100229150	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.10188679245283	27	0.00131594018804135	2.23724461158509	2.50494909502262	2.12376118925831	0.0524259106482342	0.532036613272311	15	ctatcattggcttgaacaacTctggcaaaactgttcttgtg	8	9	3	1	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	ARL13A-131	NM_001162490	exon3	c.T94C	p.S32P	AACAACTCTGGCA	.	83	7	112	0	.	0	0	0	0	0	C	100229150	T	C	100229150	3	2	30	1	0	0	0	0	1	0	0	0	928	1551	54	4	100	4	ARL13A	23	100229150	Missense_Mutation	SNP	T	TCGA-OR-A5K9-01A-11D-A29I-10	26267621	100229150	55041410	263	5367										
ZMAT1	84460	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	101139313	101139313	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.10188679245283	27	0.00131594018804135	2.23724461158509	2.50494909502262	2.12376118925831	0.0524259106482342	0.532036613272311	15	tggtatggtcgttggtaggtCtgggaagcctcatgtgaaaa	15	5	2	1	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	ZMAT1-131	NM_001011657	exon7	c.G1086A	p.Q362Q	GTAGGTCTGGGAA	.	133	19	149	0	.	1	1	0	0	0	T	101139313	C	T	101139313	2	4	30	1	0	0	0	0	0	0	0	1	17728	912	32	3		3	ZMAT1	23	101139313	Silent	SNP	C	TCGA-OR-A5K9-01A-11D-A29I-10	910163	101139313	54131247	264	5368										
MORF4L2	9643	ucsc.edu	37	chrX	102931750	102931750	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.10188679245283	27	0.00131594018804135	2.23724461158509	2.50494909502262	2.12376118925831	0.0524259106482342	0.532036613272311	15	tggtcttcctcacggatcctGaaggggggttctctgcagag	14	10	3	2	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	MORF4L2-130	NM_001142422	exon5	c.C206A	p.S69X	GATCCTGAAGGGG	.	37	4	24	0	.	278	278	0	0	0	T	102931750	G	T	102931750	4	4	30	1	0	0	0	0	0	1	0	0	9735	1294	45	3	664	3	MORF4L2	23	102931750	Nonsense_Mutation	SNP	G	TCGA-OR-A5K9-01A-11D-A29I-10	1792437	102931750	52338810	265	5369										
PAK3	5063	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	110439738	110439738	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.10188679245283	27	0.00131594018804135	2.23724461158509	2.50494909502262	2.12376118925831	0.0524259106482342	0.532036613272311	15	aagcactatggtgggaacccCatattggatggcacctgagg	13	9	0	1	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	PAK3-1043	NM_001128168	exon14	c.C1385T	p.P462L	GAACCCCATATTG	.	152	60	137	0	.	0	0	0	0	0	T	110439738	C	T	110439738	3	4	30	1	0	0	0	0	1	0	0	0	11431	594	21	3	1439	3	PAK3	23	110439738	Missense_Mutation	SNP	C	TCGA-OR-A5K9-01A-11D-A29I-10	7507988	110439738	44830822	266	5370										
WDR44	54521	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	117532433	117532433	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.10188679245283	27	0.00131594018804135	2.23724461158509	2.50494909502262	2.12376118925831	0.0524259106482342	0.532036613272311	15	tggaaggttaaaacagaaaaCgtgagttacagtacatccct	9	7	0	2	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	WDR44-133	NM_001184965	exon8	c.C1274A	p.T425K	AGAAAACGTGAGT	.	383	147	540	0	.	0	0	0	0	0	A	117532433	C	A	117532433	3	1	30	1	0	0	0	0	1	0	0	0	17334	550	19	2	1304	2	WDR44	23	117532433	Missense_Mutation	SNP	C	TCGA-OR-A5K9-01A-11D-A29I-10	7092695	117532433	37738127	267	5371										
F9	2158	bcgsc.ca	37	chrX	138633280	138633280	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.10188679245283	27	0.00131594018804135	2.23724461158509	2.50494909502262	2.12376118925831	0.0524259106482342	0.532036613272311	15	ctaagctcacccgtgctgagActgtttttcctgatgtggac	10	11	1	2	rs6048	bycluster;byfrequency;bysubmitter;by1000genomes	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	F9-227	NM_000133	exon6	c.A580G	p.T194A	GCTGAGACTGTTT	.	114	5	132	0	A|0.797;0|0.004	0	0	0	0	0	G	138633280	A	G	138633280	3	3	30	1	0	0	0	0	1	0	0	0	5367	275	10	4	602	4	F9	23	138633280	Missense_Mutation	SNP	A	TCGA-OR-A5K9-01A-11D-A29I-10	21100847	138633280	16637280	268	5372										
LDOC1	23641	broad.mit.edu	37	chrX	140271095	140271095	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.10188679245283	27	0.00131594018804135	2.23724461158509	2.50494909502262	2.12376118925831	0.0524259106482342	0.532036613272311	15	tacctggcgcagcaggctggCcctctcgcacaccagcagcc	11	18	1	0	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	LDOC1-130	NM_012317	exon1	c.G112T	p.A38S	GGCTGGCCCTCTC	.	187	17	41	1	.	0	0	0	0	0	A	140271095	C	A	140271095	3	1	30	1	0	0	0	0	1	0	0	0	8731	739	26	3	332	3	LDOC1	23	140271095	Missense_Mutation	SNP	C	TCGA-OR-A5K9-01A-11D-A29I-10	1637815	140271095	14999465	269	5373										
TAZ	6901	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	153647890	153647890	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.10188679245283	27	0.00131594018804135	2.23724461158509	2.50494909502262	2.12376118925831	0.0524259106482342	0.532036613272311	15	ttttccttgcaggagatggcGtctaccagaaggggatggac	14	8	1	2	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	TAZ-130	NM_181312	exon6	c.G469A	p.V157I	GATGGCGTCTACC	.	267	109	253	0	.	2	2	0	0	0	A	153647890	G	A	153647890	3	1	30	1	0	0	0	0	1	0	0	0	15633	1145	40	1	491	1	TAZ	23	153647890	Missense_Mutation	SNP	G	TCGA-OR-A5K9-01A-11D-A29I-10	13376795	153647890	1622670	270	5374										
TTLL10	254173	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	1117120	1117120	+	Splice_Site	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cctctgtcccctgggctgcaGgctggaaaaggacgcagcag	14	13	1	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TTLL10-153	NM_001130045	exon9	c.756-1G>A	.	GCTGCAGGCTGGA	.	392	94	298	0	.	0	0	0	0	0	A	1117120	G	A	1117120	5	1	31	1	0	0	0	0	0	0	1	0	16761	1014	35	3	777	3	TTLL10	1	1117120	Splice_Site	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10		1117120	248133501	1	5375										
MXRA8	54587	hgsc.bcm.edu	37	chr1	1290077	1290077	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ttcacctgggcctggggcgcCgctgtggctggagccgttgc	17	13	1	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MXRA8-90	NM_032348	exon5	c.G934A	p.G312S	GGGCGCCGCTGTG	.	36	14	2	0	.	0	0	0	0	0	T	1290077	C	T	1290077	3	4	31	1	0	0	0	0	1	0	0	0	10033	652	23	1	418	1	MXRA8	1	1290077	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	172957	1290077	247960544	2	5376										
CCNL2	81669	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	1334033	1334033	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gaaccgctggaacaacacctGcccggtagccatggccacct	10	16	0	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CCNL2-70	NM_030937	exon2	c.C307T	p.Q103X	ACACCTGCCCGGT	.	245	124	215	0	.	0	0	0	0	0	A	1334033	G	A	1334033	4	1	31	1	0	0	0	0	0	1	0	0	2938	1328	46	3	1321	3	CCNL2	1	1334033	Nonsense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	43956	1334033	247916588	3	5377										
GNB1	2782	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	1747196	1747196	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tgctcatgcccacgcctaccTggagtctgtgccccagtgca	10	16	2	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GNB1-227	NM_002074	exon5	c.A202C	p.R68R	CCTACCTGGAGTC	.	176	88	115	1	.	0	0	0	0	0	G	1747196	T	G	1747196	2	3	31	1	0	0	0	0	0	0	0	1	6535	1594	55	5		5	GNB1	1	1747196	Silent	SNP	T	TCGA-OR-A5KB-01A-11D-A30A-10	413163	1747196	247503425	4	5378										
PANK4	55229	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	2440355	2440355	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cccagccgctcggccagccaCgcgttcttgatgacggccag	12	17	1	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PANK4-158	NM_018216	exon19	c.G2253T	p.A751A	CAGCCACGCGTTC	.	220	104	77	0	.	0	0	0	0	0	A	2440355	C	A	2440355	2	1	31	1	0	0	0	0	0	0	0	1	11448	523	19	2		2	PANK4	1	2440355	Silent	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	693159	2440355	246810266	5	5379										
PANK4	55229	broad.mit.edu;bcgsc.ca	37	chr1	2445885	2445885	+	Silent	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tccacagagtctggctggctCgccactgcgcgcttcactac	10	16	2	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PANK4-158	NM_018216	exon11	c.G1395C	p.A465A	CTGGCTCGCCACT	.	90	29	87	2	.	0	0	0	0	0	G	2445885	C	G	2445885	2	3	31	1	0	0	0	0	0	0	0	1	11448	871	31	2		2	PANK4	1	2445885	Silent	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	5530	2445885	246804736	6	5380										
PRDM16	63976	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	3328612	3328612	+	Silent	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	acggggaccgacctggacacGaccacggggacgggctcgga	17	13	0	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PRDM16-660	NM_022114	exon9	c.G1851C	p.T617T	GGACACGACCACG	.	298	62	174	1	.	0	0	0	0	0	C	3328612	G	C	3328612	2	2	31	1	0	0	0	0	0	0	0	1	12489	1045	37	2		2	PRDM16	1	3328612	Silent	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	882727	3328612	245922009	7	5381										
TP73	7161	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	3639930	3639930	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cccggcaggacagtctgctcCagccagccacctcatccgcg	10	19	2	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TP73-415	NM_005427	exon6	c.C629T	p.P210L	CTGCTCCAGCCAG	.	731	161	597	2	.	0	0	0	0	0	T	3639930	C	T	3639930	3	4	31	1	0	0	0	0	1	0	0	0	16431	594	21	3	690	3	TP73	1	3639930	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	311318	3639930	245610691	8	5382										
CCDC27	148870	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	3669101	3669101	+	Frame_Shift_Del	DEL	G	G	-													0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	caggctgaagagagatccacGggaaaagccgggcctgtcct					novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CCDC27-91	NM_152492	exon1	c.56delG	p.R19fs	ATCCACGGGAAAA	.	176	88	101	0	.	0	0	0	0	0	-	3669101	G	-	3669101	7	5	31	1	0	1	0	1	0	0	0	0	2807	1116	39	0	58	0	CCDC27	1	3669101	Frame_Shift_Del	DEL	G	TCGA-OR-A5KB-01A-11D-A30A-10	29171	3669101	245581520	9	5383										
CHD5	26038	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	6196856	6196856	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ggcccactcgatggagcccaGgatggcctggtcaatggtga	15	11	1	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CHD5-719	NM_015557	exon16	c.C2506T	p.L836L	AGCCCAGGATGGC	.	158	37	104	0	.	0	0	0	0	0	A	6196856	G	A	6196856	2	1	31	1	0	0	0	0	0	0	0	1	3334	991	35	3		3	CHD5	1	6196856	Silent	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	2527755	6196856	243053765	10	5384										
CAMTA1	23261	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	7723792	7723792	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gtgatggggagcttgtcccaGagcgccacggtgttcatgtc	15	10	1	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CAMTA1-520	NM_015215	exon9	c.G1185T	p.Q395H	GTCCCAGAGCGCC	.	227	118	170	1	.	0	0	0	0	0	T	7723792	G	T	7723792	3	4	31	1	0	0	0	0	1	0	0	0	2619	933	33	3	1219	3	CAMTA1	1	7723792	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	1526936	7723792	241526829	11	5385										
PER3	8863	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	7869982	7869982	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gtgagcgtgtccagcggctaCgggagcctggggagcagcgg	20	10	0	1	rs140055805	byfrequency;alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PER3-93	NM_016831	exon11	c.C1269A	p.Y423X	CGGCTACGGGAGC	.	297	143	215	1	C|1.000;T|0.000	0	0	0	0	0	A	7869982	C	A	7869982	4	1	31	1	0	0	0	0	0	1	0	0	11760	547	19	2	1311	2	PER3	1	7869982	Nonsense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	146190	7869982	241380639	12	5386										
SRM	6723	hgsc.bcm.edu	37	chr1	11119899	11119899	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	agcagctgctccacctgcagTgacagggcctggccgggcca	14	15	0	1	rs7545802		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SRM-90	NM_003132	exon1	c.A102G	p.S34S	CTGCAGTGACAGG	.	7	7	0	0	T|0.001;C|0.999	0	0	0	0	0	C	11119899	T	C	11119899	2	2	31	1	0	0	0	0	0	0	0	1	15188	1683	59	4		4	SRM	1	11119899	Silent	SNP	T	TCGA-OR-A5KB-01A-11D-A30A-10	3249917	11119899	238130722	13	5387										
VPS13D	55187	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	12339596	12339596	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	accaccattcagtttaaactGgagaagatccctatagagag	8	9	1	3	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	VPS13D-95	NM_015378	exon20	c.G4491A	p.L1497L	TAAACTGGAGAAG	.	169	49	156	0	.	0	0	0	0	0	A	12339596	G	A	12339596	2	1	31	1	0	0	0	0	0	0	0	1	17230	1335	47	3		3	VPS13D	1	12339596	Silent	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	1219697	12339596	236911025	14	5388										
VPS13D	55187	broad.mit.edu	37	chr1	12476832	12476832	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ataaaatatggaaatgtcggGggcctcatcagaaatgttac	10	6	2	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	VPS13D-95	NM_015378	exon65	c.G12285T	p.G4095G	TGTCGGGGGCCTC	.	68	17	46	2	.	0	0	0	0	0	T	12476832	G	T	12476832	2	4	31	1	0	0	0	0	0	0	0	1	17230	1219	43	3		3	VPS13D	1	12476832	Silent	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	137236	12476832	236773789	15	5389										
PRAMEF1	65121	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	12854331	12854331	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cacctgtgctgtagtaagctGgtcaattatctaacgccgat	9	10	2	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PRAMEF1-22	NM_023013	exon3	c.G555C	p.L185L	TAAGCTGGTCAAT	.	289	134	261	0	.	0	0	0	0	0	C	12854331	G	C	12854331	2	2	31	1	0	0	0	0	0	0	0	1	12457	1335	47	3		3	PRAMEF1	1	12854331	Silent	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	377499	12854331	236396290	16	5390										
PRAMEF11	440560	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	12887562	12887562	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ctgccgttctctcatccttgGacagtcctgcactggtgttt	9	13	2	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_001146344	exon3	c.C295A	p.P99T	TCCTTGGACAGTC	.	72	21	43	0	.	0	0	0	0	0	T	12887562	G	T	12887562	3	4	31	1	0	0	0	0	1	0	0	0	12459	1174	41	3	1023	3	PRAMEF11	1	12887562	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	33231	12887562	236363059	17	5391										
PRAMEF2	65122	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	12918933	12918933	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ctgctgagagaccaggccttGtccatctctgccatggagga	12	12	1	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PRAMEF2-68	NM_023014	exon2	c.G69C	p.L23F	GGCCTTGTCCATC	.	152	90	165	1	.	0	0	0	0	0	C	12918933	G	C	12918933	3	2	31	1	0	0	0	0	1	0	0	0	12467	1368	48	3	71	3	PRAMEF2	1	12918933	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	31371	12918933	236331688	18	5392										
PRAMEF10	343071	broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr1	12954838	12954838	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	taggcagaggtctatgaacaCcttcaagggctggtgctctc	12	10	3	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PRAMEF10-90	NM_001039361	exon3	c.G445T	p.V149L	TGAACACCTTCAA	.	143	69	146	1	.	0	0	0	0	0	A	12954838	C	A	12954838	3	1	31	1	0	0	0	0	1	0	0	0	12458	507	18	3	987	3	PRAMEF10	1	12954838	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	35905	12954838	236295783	19	5393										
CROCC	9696	hgsc.bcm.edu	37	chr1	17265519	17265519	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gcggaccccgtccccaccgcGgcgctcctcgcccggccgag	13	22	0	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CROCC-137	NM_014675	exon12	c.G1490T	p.R497L	CACCGCGGCGCTC	.	20	12	1	0	.	0	0	0	0	0	T	17265519	G	T	17265519	3	4	31	1	0	0	0	0	1	0	0	0	3899	1116	39	2	1536	2	CROCC	1	17265519	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	4310681	17265519	231985102	20	5394										
ATP13A2	23400	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	17313430	17313430	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	aggttgtctggtgcggccacTgtcctgttcagaggcacgaa	14	10	2	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ATP13A2-93	NM_022089	exon27	c.A3105G	p.T1035T	GGCCACTGTCCTG	.	159	75	72	1	.	0	0	0	0	0	C	17313430	T	C	17313430	2	2	31	1	0	0	0	0	0	0	0	1	1125	1567	55	4		4	ATP13A2	1	17313430	Silent	SNP	T	TCGA-OR-A5KB-01A-11D-A30A-10	47911	17313430	231937191	21	5395										
PAX7	5081	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	19018406	19018406	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cagacatatacacccgcgagGagctggcgcagaggaccaag	13	12	0	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PAX7-1630	NM_002584	exon5	c.G745T	p.E249X	CGCGAGGAGCTGG	.	203	46	169	1	.	0	0	0	0	0	T	19018406	G	T	19018406	4	4	31	1	0	0	0	0	0	1	0	0	11513	1175	41	3	763	3	PAX7	1	19018406	Nonsense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	1704976	19018406	230232215	22	5396										
PLA2G5	5322	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	20416346	20416346	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	agggctgcaacattcgcacaCagtcctacaaatacagattc	7	12	0	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PLA2G5-515	NM_000929	exon4	c.C250T	p.Q84X	CGCACACAGTCCT	.	181	48	148	0	.	0	0	0	0	0	T	20416346	C	T	20416346	4	4	31	1	0	0	0	0	0	1	0	0	12036	479	17	3	260	3	PLA2G5	1	20416346	Nonsense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	1397940	20416346	228834275	23	5397										
HSPG2	3339	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	22179236	22179236	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gtgaccaggactgaggcctcTagggggccggaggtgcccac	17	12	1	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	HSPG2-141	NM_005529	exon52	c.A6681T	p.L2227L	GGCCTCTAGGGGG	.	171	43	110	0	.	0	0	0	0	0	A	22179236	T	A	22179236	2	1	31	1	0	0	0	0	0	0	0	1	7451	1509	53	5		5	HSPG2	1	22179236	Silent	SNP	T	TCGA-OR-A5KB-01A-11D-A30A-10	1762890	22179236	227071385	24	5398										
CNKSR1	10256	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	26509747	26509747	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gtgtcccaagtggacacccaGgtgagagccccacacccttc	10	16	0	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CNKSR1-846	NM_006314	exon7	c.G684T	p.Q228H	CACCCAGGTGAGA	.	317	80	277	0	.	0	0	0	0	0	T	26509747	G	T	26509747	3	4	31	1	0	0	0	0	1	0	0	0	3612	1014	35	3	710	3	CNKSR1	1	26509747	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	4330511	26509747	222740874	25	5399										
RPS6KA1	6195	hgsc.bcm.edu	37	chr1	26856462	26856462	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ccgctcatggagctagtgccTctggacccggaggtgagtga	15	11	2	2	rs11800553	byfrequency	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	RPS6KA1-510	NM_002953	exon1	c.T51G	p.P17P	AGTGCCTCTGGAC	.	8	8	0	0	T|0.065;G|0.935	0	0	0	0	0	G	26856462	T	G	26856462	2	3	31	1	0	0	0	0	0	0	0	1	13685	1538	54	5		5	RPS6KA1	1	26856462	Silent	SNP	T	TCGA-OR-A5KB-01A-11D-A30A-10	346715	26856462	222394159	26	5400										
WDTC1	23038	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	27627876	27627876	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gacttcaaagggaaatttccGgagcaggcccacagcagcgc	12	12	1	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	WDTC1-91	NM_001276252	exon13	c.G1392A	p.P464P	ATTTCCGGAGCAG	.	119	24	119	0	.	0	0	0	0	0	A	27627876	G	A	27627876	2	1	31	1	0	0	0	0	0	0	0	1	17380	1103	39	1		1	WDTC1	1	27627876	Silent	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	771414	27627876	221622745	27	5401										
OPRD1	4985	hgsc.bcm.edu	37	chr1	29189702	29189702	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ccctgcggccgcccagacccCagcagcttcagccgcgcccg	11	22	1	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OPRD1-69	NM_000911	exon3	c.C1026A	p.P342P	AGACCCCAGCAGC	.	33	10	3	0	.	0	0	0	0	0	A	29189702	C	A	29189702	2	1	31	1	0	0	0	0	0	0	0	1	10913	581	21	3		3	OPRD1	1	29189702	Silent	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	1561826	29189702	220060919	28	5402										
MECR	51102	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	29520573	29520573	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tttgaagatatgaagggcttCatggaggcttccaaggcaga	13	6	1	4	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MECR-91	NM_016011	exon10	c.G1083T	p.M361I	GGGCTTCATGGAG	.	102	29	76	0	.	0	0	0	0	0	A	29520573	C	A	29520573	3	1	31	1	0	0	0	0	1	0	0	0	9452	826	29	3	42	3	MECR	1	29520573	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	330871	29520573	219730048	29	5403										
PTPRU	10076	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	29644272	29644272	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ccctgtagacgctgaactcgGtcaccccgccgctggacgtg	12	16	1	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PTPRU-291	NM_005704	exon26	c.G3556T	p.V1186F	AACTCGGTCACCC	.	108	32	35	1	.	0	0	0	0	0	T	29644272	G	T	29644272	3	4	31	1	0	0	0	0	1	0	0	0	12848	1261	44	3	3680	3	PTPRU	1	29644272	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	123699	29644272	219606349	30	5404										
PUM1	9698	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	31447604	31447604	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	aaagactggcagggtagactCcccagggagtaactccataa	11	10	0	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PUM1-92	NM_014676	exon10	c.G1400T	p.G467V	TAGACTCCCCAGG	.	116	46	85	0	.	0	0	0	0	0	A	31447604	C	A	31447604	3	1	31	1	0	0	0	0	1	0	0	0	12860	855	30	3	2218	3	PUM1	1	31447604	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	1803332	31447604	217803017	31	5405										
BAI2	576	bcgsc.ca	37	chr1	32196920	32196920	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ctgaggctgccctcagggccCacgaggcaggacttgggctc	15	14	1	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	BAI2-526	NM_001703	exon29	c.G3861T	p.V1287V	AGGGCCCACGAGG	.	406	210	309	4	.	0	0	0	0	0	A	32196920	C	A	32196920	2	1	31	1	0	0	0	0	0	0	0	1	1300	581	21	3		3	BAI2	1	32196920	Silent	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	749316	32196920	217053701	32	5406										
PTP4A2	8073	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	32374453	32374453	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gccttcgtttacatttccttCtactgaacacagcaatgccc	5	14	1	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PTP4A2-650	NM_080391	exon6	c.G504A	p.X168X	TTCCTTCTACTGA	.	92	41	91	0	.	0	0	0	0	0	T	32374453	C	T	32374453	2	4	31	1	0	0	0	0	0	0	0	1	12804	924	32	3		3	PTP4A2	1	32374453	Silent	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	177533	32374453	216876168	33	5407										
LCK	3932	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	32741016	32741016	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	aagcgaacagcctggagcccGaaccgtaagtggggacccgt	14	12	0	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	LCK-1378	NM_005356	exon5	c.G373T	p.E125X	GAGCCCGAACCGT	.	398	198	292	0	.	0	0	0	0	0	T	32741016	G	T	32741016	4	4	31	1	0	0	0	0	0	1	0	0	8698	1059	37	2	387	2	LCK	1	32741016	Nonsense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	366563	32741016	216509605	34	5408										
CSMD2	114784	ucsc.edu;bcgsc.ca	37	chr1	34006180	34006180	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tttccctcacaggtgaacacCgcgggcagggagagctggta	14	11	1	2	rs1532308	byfrequency;alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CSMD2-103	NM_052896	exon59	c.G9144C	p.A3048A	GAACACCGCGGGC	.	390	201	280	3	C|0.991;T|0.009	0	0	0	0	0	G	34006180	C	G	34006180	2	3	31	1	0	0	0	0	0	0	0	1	3951	639	23	2		2	CSMD2	1	34006180	Silent	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	1265164	34006180	215244441	35	5409										
HMGB4	127540	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	34329806	34329806	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tacgaacatgggaaaagaaaTccagctaaagcctaaggcaa	9	8	0	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	HMGB4-90	NM_145205	exon2	c.T14A	p.I5N	AAGAAATCCAGCT	.	163	37	145	0	.	0	0	0	0	0	A	34329806	T	A	34329806	3	1	31	1	0	0	0	0	1	0	0	0	7249	1435	50	5	16	5	HMGB4	1	34329806	Missense_Mutation	SNP	T	TCGA-OR-A5KB-01A-11D-A30A-10	323626	34329806	214920815	36	5410										
C1orf94	84970	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	34662954	34662954	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gctggaggtacccggcagctCtcccgaggggaccagagagc	16	13	1	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	C1orf94-90	NM_001134734	exon2	c.C449A	p.S150Y	GCAGCTCTCCCGA	.	100	20	81	0	.	0	0	0	0	0	A	34662954	C	A	34662954	3	1	31	1	0	0	0	0	1	0	0	0	2077	913	32	3	455	3	C1orf94	1	34662954	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	333148	34662954	214587667	37	5411										
C1orf94	84970	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	34663403	34663403	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ctccccgacctcctcctgcaCgtcctgacaagctccctgag	7	20	0	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	C1orf94-90	NM_001134734	exon2	c.C898A	p.R300S	CCTGCACGTCCTG	.	107	53	101	0	.	0	0	0	0	0	A	34663403	C	A	34663403	3	1	31	1	0	0	0	0	1	0	0	0	2077	536	19	2	904	2	C1orf94	1	34663403	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	449	34663403	214587218	38	5412										
RSPO1	284654	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	38078537	38078537	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ctccttgctctccttcctggCcaggttcctgttggcattct	8	15	2	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	RSPO1-22	NM_001242908	exon7	c.G682A	p.A228T	TCCTGGCCAGGTT	.	95	27	94	0	.	0	0	0	0	0	T	38078537	C	T	38078537	3	4	31	1	0	0	0	0	1	0	0	0	13744	739	26	3	113	3	RSPO1	1	38078537	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	3415134	38078537	211172084	39	5413										
EPHA10	284656	hgsc.bcm.edu	37	chr1	38227086	38227086	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	caactggataccttcgcagaAgtcaccacgctcctggaatc	8	14	1	1	rs4653328	byfrequency	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	EPHA10-1246	NM_001099439	exon3	c.T841A	p.F281I	CGCAGAAGTCACC	.	16	10	2	0	A|0.665;T|0.335	0	0	0	0	0	T	38227086	A	T	38227086	3	4	31	1	0	0	0	0	1	0	0	0	5179	72	3	5	2283	5	EPHA10	1	38227086	Missense_Mutation	SNP	A	TCGA-OR-A5KB-01A-11D-A30A-10	148549	38227086	211023535	40	5414										
MACF1	23499	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	39549943	39549943	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gcggtcatgtcggagtgagcGgtcttgtcggagtgagcgat	18	7	2	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MACF1-165	NM_012090	exon3	c.G53T	p.R18L	GTGAGCGGTCTTG	.	138	33	101	0	.	0	0	0	0	0	T	39549943	G	T	39549943	3	4	31	1	0	0	0	0	1	0	0	0	9172	1116	39	2	55	2	MACF1	1	39549943	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	1322857	39549943	209700678	41	5415										
MACF1	23499	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	39818684	39818684	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ctcggtggctttcagagtaaAgcagcaaaggaactggcaga	13	8	1	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MACF1-165	NM_012090	exon40	c.A5019T	p.K1673N	GAGTAAAGCAGCA	.	64	29	66	0	.	0	0	0	0	0	T	39818684	A	T	39818684	3	4	31	1	0	0	0	0	1	0	0	0	9172	69	3	5	11324	5	MACF1	1	39818684	Missense_Mutation	SNP	A	TCGA-OR-A5KB-01A-11D-A30A-10	268741	39818684	209431937	42	5416										
HIVEP3	59269	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	42045967	42045967	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cagatggatctgaggacaggCtggacagcatttctagctcc	12	10	2	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	HIVEP3-157	NM_024503	exon4	c.G4502T	p.S1501I	GACAGGCTGGACA	.	133	35	103	0	.	0	0	0	0	0	A	42045967	C	A	42045967	3	1	31	1	0	0	0	0	1	0	0	0	7209	797	28	3	2742	3	HIVEP3	1	42045967	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	2227283	42045967	207204654	43	5417										
HIVEP3	59269	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	42047294	42047294	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tcccttgggggcaacctccaActcagattctggaggcctgc	11	14	2	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	HIVEP3-157	NM_024503	exon4	c.T3175C	p.L1059L	CCTCCAACTCAGA	.	114	21	94	0	.	0	0	0	0	0	G	42047294	A	G	42047294	2	3	31	1	0	0	0	0	0	0	0	1	7209	40	2	4		4	HIVEP3	1	42047294	Silent	SNP	A	TCGA-OR-A5KB-01A-11D-A30A-10	1327	42047294	207203327	44	5418										
MPL	4352	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	43818247	43818248	+	Frame_Shift_Ins	INS	-	-	C													0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cccagcctccttgaaatcctINSccccaagtcctcagagagga					novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MPL-9885	NM_005373	exon12	c.1712_1713insC	p.L571fs	AAATCCTCCCCAA	.	215	47	176	0	.	0	0	0	0	0	C	43818248	-	C	43818247	7	5	31	1	0	1	1	0	0	0	0	0	9758	1551	54	0	1758	0	MPL	1	43818247	Frame_Shift_Ins	INS	-	TCGA-OR-A5KB-01A-11D-A30A-10	1770953	43818247	205432374	45	5419										
PTPRF	5792	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	44063549	44063550	+	Missense_Mutation	DNP	GG	GG	AT													0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tactccgtggcctacgaggcGgtggacggcgaggaccgcgg					novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	GG	GG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PTPRF-232	NM_002840	exon12	c.G1945T	p.V649L	GAGGCGGTGGACG	.	280	0	49	0	.	0	0	0	0	0	AT	44063550	GG	AT	44063549	3	1	31	1	0	0	0	0	1	0	0	0	12836	1103	39	1	1982	1	PTPRF	1	44063549	Missense_Mutation	DNP	GG	TCGA-OR-A5KB-01A-11D-A30A-10	245302	44063549	205187072	46	5420										
TCTEX1D4	343521	broad.mit.edu	37	chr1	45271742	45271742	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tgttggtgtaggagaccgagGccagcccatcgcgcgccacg	15	13	0	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TCTEX1D4-91	NM_001013632	exon2	c.C599T	p.A200V	ACCGAGGCCAGCC	.	67	5	26	0	.	0	0	0	0	0	A	45271742	G	A	45271742	3	1	31	1	0	0	0	0	1	0	0	0	15758	1203	42	3	70	3	TCTEX1D4	1	45271742	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	1208193	45271742	203978879	47	5421										
ELAVL4	1996	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	50610817	50610817	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gaagaattcaggagtctcttCgggagcattggtgaaataga	13	5	2	3	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ELAVL4-516	NM_001144775	exon2	c.C249T	p.F83F	TCTCTTCGGGAGC	.	187	73	181	0	.	0	0	0	0	0	T	50610817	C	T	50610817	2	4	31	1	0	0	0	0	0	0	0	1	5065	883	31	1		1	ELAVL4	1	50610817	Silent	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	5339075	50610817	198639804	48	5422										
ELAVL4	1996	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	50659488	50659488	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tcagggatgctaacctctatGttagcggccttcccaaaacc	8	13	2	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ELAVL4-516	NM_001144775	exon4	c.G457T	p.V153F	CTCTATGTTAGCG	.	259	62	219	0	.	0	0	0	0	0	T	50659488	G	T	50659488	3	4	31	1	0	0	0	0	1	0	0	0	5065	1377	48	3	519	3	ELAVL4	1	50659488	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	48671	50659488	198591133	49	5423										
ZFYVE9	9372	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	52740214	52740214	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	caatgaatcttattcctgaaGatggccttcctcccattctc	5	13	2	3	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ZFYVE9-230	NM_004799	exon8	c.G2704C	p.D902H	CCTGAAGATGGCC	.	125	8	119	0	.	0	0	0	0	0	C	52740214	G	C	52740214	3	2	31	1	0	0	0	0	1	0	0	0	17708	942	33	3	2737	3	ZFYVE9	1	52740214	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	2080726	52740214	196510407	50	5424										
WDR78	79819	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	67306280	67306280	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	atgtatttcttcttcctcctCcttcttagattcttcctcta	2	13	5	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	WDR78-92	NM_207014	exon9	c.G1366A	p.E456K	CCTCCTCCTTCTT	.	143	38	98	0	.	0	0	0	0	0	T	67306280	C	T	67306280	3	4	31	1	0	0	0	0	1	0	0	0	17366	864	30	3	1273	3	WDR78	1	67306280	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	14566066	67306280	181944341	51	5425										
LRRC7	57554	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	70446116	70446116	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	agttatggatggataataatGcattacaagtgttacctggg	11	4	0	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	LRRC7-163	NM_020794	exon7	c.G652T	p.A218S	AATAATGCATTAC	.	72	25	74	0	.	0	0	0	0	0	T	70446116	G	T	70446116	3	4	31	1	0	0	0	0	1	0	0	0	9047	1319	46	3	678	3	LRRC7	1	70446116	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	3139836	70446116	178804505	52	5426										
LRRC7	57554	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	70504166	70504166	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ggcagaattggaccagaaccCctagtccgtttgaagacagg	12	10	0	4	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	LRRC7-163	NM_020794	exon19	c.C2545A	p.P849T	AGAACCCCTAGTC	.	269	59	228	0	.	0	0	0	0	0	A	70504166	C	A	70504166	3	1	31	1	0	0	0	0	1	0	0	0	9047	623	22	3	2619	3	LRRC7	1	70504166	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	58050	70504166	178746455	53	5427										
LRRC7	57554	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	70505345	70505345	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ataacttgggtaactatggtGacaagccatcagataacagt	9	7	1	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	LRRC7-163	NM_020794	exon19	c.G3724A	p.D1242N	TATGGTGACAAGC	.	139	31	126	1	.	0	0	0	0	0	A	70505345	G	A	70505345	3	1	31	1	0	0	0	0	1	0	0	0	9047	1290	45	3	3798	3	LRRC7	1	70505345	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	1179	70505345	178745276	54	5428										
LRRIQ3	127255	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	74507594	74507594	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ggtatccaatttttcatccaCaatttcatcttcagactcct	3	12	4	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	LRRIQ3-92	NM_001105659	exon7	c.G1021T	p.V341L	CATCCACAATTTC	.	31	9	19	0	.	0	0	0	0	0	A	74507594	C	A	74507594	3	1	31	1	0	0	0	0	1	0	0	0	9057	478	17	3	861	3	LRRIQ3	1	74507594	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	4002249	74507594	174743027	55	5429										
LHX8	431707	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	75622718	75622718	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gcttattctgcctacgtgccCcaagatggaacgatgttaac	9	11	1	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	LHX8-93	NM_001001933	exon9	c.C951A	p.P317P	CGTGCCCCAAGAT	.	237	58	205	0	.	0	0	0	0	0	A	75622718	C	A	75622718	2	1	31	1	0	0	0	0	0	0	0	1	8799	610	22	3		3	LHX8	1	75622718	Silent	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	1115124	75622718	173627903	56	5430										
ASB17	127247	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	76397853	76397853	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gtaaatccttggttcgtaacAgtgatatccccactgaccca	7	12	0	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ASB17-227	NM_080868	exon1	c.T124G	p.C42G	CGTAACAGTGATA	.	166	38	121	0	.	0	0	0	0	0	C	76397853	A	C	76397853	3	2	31	1	0	0	0	0	1	0	0	0	1022	188	7	5	775	5	ASB17	1	76397853	Missense_Mutation	SNP	A	TCGA-OR-A5KB-01A-11D-A30A-10	775135	76397853	172852768	57	5431										
ST6GALNAC3	256435	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	76877898	76877898	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tcctcttttgctaaaaaaccCtgattattttttcaaggaag	5	8	2	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ST6GALNAC3-95	NM_001160011	exon3	c.C419T	p.P140L	AAAACCCTGATTA	.	198	90	189	0	.	0	0	0	0	0	T	76877898	C	T	76877898	3	4	31	1	0	0	0	0	1	0	0	0	15262	681	24	3	429	3	ST6GALNAC3	1	76877898	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	480045	76877898	172372723	58	5432										
AK5	26289	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	77759610	77759610	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ggagtatgaggtttttgatcCtaccagacctcgaccaaaaa	9	9	0	3	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	AK5-227	NM_174858	exon3	c.C380A	p.P127H	TTGATCCTACCAG	.	161	21	157	0	.	0	0	0	0	0	A	77759610	C	A	77759610	3	1	31	1	0	0	0	0	1	0	0	0	443	681	24	3	390	3	AK5	1	77759610	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	881712	77759610	171491011	59	5433										
AK5	26289	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	77987587	77987587	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ggggcttcctgattgacggcTatcctcgggaggtgaagcaa	15	9	0	3	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	AK5-227	NM_174858	exon12	c.T1387A	p.Y463N	GACGGCTATCCTC	.	90	43	57	0	.	0	0	0	0	0	A	77987587	T	A	77987587	3	1	31	1	0	0	0	0	1	0	0	0	443	1522	53	5	1433	5	AK5	1	77987587	Missense_Mutation	SNP	T	TCGA-OR-A5KB-01A-11D-A30A-10	227977	77987587	171263034	60	5434										
ELTD1	64123	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	79403806	79403806	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gtaagagttgagttagaaagGgtgtccttggctgagatagt	15	3	0	4	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ELTD1-24	NM_022159	exon5	c.C555A	p.T185T	AGAAAGGGTGTCC	.	195	38	221	3	.	0	0	0	0	0	T	79403806	G	T	79403806	2	4	31	1	0	0	0	0	0	0	0	1	5097	1219	43	3		3	ELTD1	1	79403806	Silent	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	1416219	79403806	169846815	61	5435										
LPHN2	23266	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	82372734	82372734	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cagctttaccatttgggctgGtgaggcgagaattatcctgt	12	8	0	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	LPHN2-525	NM_012302	exon3	c.G106T	p.V36L	GGGCTGGTGAGGC	.	110	54	85	0	.	0	0	0	0	0	T	82372734	G	T	82372734	3	4	31	1	0	0	0	0	1	0	0	0	8943	1261	44	3	112	3	LPHN2	1	82372734	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	2968928	82372734	166877887	62	5436										
PRKACB	5567	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	84649726	84649726	+	Nonsense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tctctcaattacaggttgttAaactgaagcaaatagagcat	7	7	2	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PRKACB-1083	NM_182948	exon4	c.A385T	p.K129X	GTTGTTAAACTGA	.	125	57	115	1	.	0	0	0	0	0	T	84649726	A	T	84649726	4	4	31	1	0	0	0	0	0	1	0	0	12530	363	13	5	449	5	PRKACB	1	84649726	Nonsense_Mutation	SNP	A	TCGA-OR-A5KB-01A-11D-A30A-10	2276992	84649726	164600895	63	5437										
LPAR3	23566	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	85279733	85279733	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tagatgatggggttcacgacGgagttgagcagcgccagcag	16	8	1	3	rs141619600	byfrequency;alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	LPAR3-502	NM_012152	exon3	c.C858A	p.S286S	CACGACGGAGTTG	.	192	42	149	1	G|1.000;A|0.000	0	0	0	0	0	T	85279733	G	T	85279733	2	4	31	1	0	0	0	0	0	0	0	1	8933	1103	39	2		2	LPAR3	1	85279733	Silent	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	630007	85279733	163970888	64	5438										
ODF2L	57489	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	86841918	86841918	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	aagaatgcatttacatacctGatctctaatttgggaagtaa	7	6	1	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ODF2L-69	NM_001007022	exon8	c.C808G	p.Q270E	ATACCTGATCTCT	.	68	16	61	0	.	0	0	0	0	0	C	86841918	G	C	86841918	3	2	31	1	0	0	0	0	1	0	0	0	10857	1299	45	3	1322	3	ODF2L	1	86841918	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	1562185	86841918	162408703	65	5439										
GBP4	115361	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	89652054	89652054	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cagcctttcatgctctctgaGaaggttttccctttcctcct	6	14	2	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GBP4-90	NM_052941	exon10	c.C1669A	p.L557I	CTCTGAGAAGGTT	.	56	13	63	0	.	0	0	0	0	0	T	89652054	G	T	89652054	3	4	31	1	0	0	0	0	1	0	0	0	6296	942	33	3	261	3	GBP4	1	89652054	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	2810136	89652054	159598567	66	5440										
ZNF644	84146	ucsc.edu;bcgsc.ca	37	chr1	91406670	91406670	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	taaggcgttttcagatttgtCctttgacagttcttcaggca	9	8	3	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ZNF644-155	NM_201269	exon3	c.G241T	p.D81Y	ATTTGTCCTTTGA	.	170	71	182	3	.	0	0	0	0	0	A	91406670	C	A	91406670	3	1	31	1	0	0	0	0	1	0	0	0	18097	855	30	3	3758	3	ZNF644	1	91406670	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	1754616	91406670	157843951	67	5441										
HFM1	164045	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	91866610	91866610	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tcaaaaaacaaattttccaaAgaaaacaggcaatcatttga	4	7	2	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	HFM1-112	NM_001017975	exon2	c.T30A	p.S10S	TTCCAAAGAAAAC	.	132	70	146	0	.	0	0	0	0	0	T	91866610	A	T	91866610	2	4	31	1	0	0	0	0	0	0	0	1	7104	59	3	5		5	HFM1	1	91866610	Silent	SNP	A	TCGA-OR-A5KB-01A-11D-A30A-10	459940	91866610	157384011	68	5442										
TGFBR3	7049	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	92182149	92182149	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	acgatttcaggtcgggtgaaCagggaagcatctccttcatc	11	10	3	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TGFBR3-93	NM_003243	exon11	c.G1683T	p.L561L	GGTGAACAGGGAA	.	226	67	223	0	.	0	0	0	0	0	A	92182149	C	A	92182149	2	1	31	1	0	0	0	0	0	0	0	1	15860	465	17	3		3	TGFBR3	1	92182149	Silent	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	315539	92182149	157068472	69	5443										
TGFBR3	7049	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	92193214	92193214	+	Splice_Site	DEL	A	A	-													0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	aagacatgctccaccaacttAcaataattttcaggcttccc					novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TGFBR3-93	NM_001195684	exon9	c.885+2T>-	.	CAACTTACAATAA	.	92	20	98	0	.	0	0	0	0	0	-	92193214	A	-	92193214	8	5	31	1	0	1	0	1	0	0	1	0	15860	405	14	0	1712	0	TGFBR3	1	92193214	Splice_Site	DEL	A	TCGA-OR-A5KB-01A-11D-A30A-10	11065	92193214	157057407	70	5444										
BRDT	676	hgsc.bcm.edu;bcgsc.ca	37	chr1	92447227	92447228	+	In_Frame_Ins	INS	-	-	AGC													0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	atgtttcccgactgagtgagINSagcagcagcagcagcagcag					novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	BRDT-374	NM_001242806	exon12	c.1929_1930insAGC	p.E643delinsES	GAGTGAGAGCAGC	.	348	132	281	0	.	0	0	0	0	0	AGC	92447228	-	AGC	92447227	7	5	31	1	0	1	1	0	0	0	0	0	1511	933	33	0	1959	0	BRDT	1	92447227	In_Frame_Ins	INS	-	TCGA-OR-A5KB-01A-11D-A30A-10	254013	92447227	156803394	71	5445										
BTBD8	284697	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	92568096	92568096	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	attcttaggaaaaagataatGgagattgggatatcacaaaa	9	3	2	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	BTBD8-91	NM_183242	exon3	c.G414T	p.M138I	GATAATGGAGATT	.	121	57	125	0	.	0	0	0	0	0	T	92568096	G	T	92568096	3	4	31	1	0	0	0	0	1	0	0	0	1550	1348	47	3	424	3	BTBD8	1	92568096	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	120869	92568096	156682525	72	5446										
SNX7	51375	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	99164270	99164270	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ttttttttttagaatattttGatgaaatgaaagaatatggc	7	1	0	5	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SNX7-229	NM_015976	exon6	c.G847A	p.D283N	TATTTTGATGAAA	.	36	8	40	0	.	0	0	0	0	0	A	99164270	G	A	99164270	3	1	31	1	0	0	0	0	1	0	0	0	14942	1290	45	3	869	3	SNX7	1	99164270	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	6596174	99164270	150086351	73	5447										
LPPR4	0	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	99764707	99764707	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	aaccaaactatacctctctgAatgtatcttgcaaagaaaat	4	9	2	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	LPPR4-93	NM_001166252	exon4	c.A655T	p.N219Y	TCTCTGAATGTAT	.	153	30	146	0	.	0	0	0	0	0	T	99764707	A	T	99764707	3	4	31	1	0	0	0	0	1	0	0	0	8954	246	9	5	669	5	LPPR4	1	99764707	Missense_Mutation	SNP	A	TCGA-OR-A5KB-01A-11D-A30A-10	600437	99764707	149485914	74	5448										
LPPR4	0	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	99771539	99771539	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	taccttgccgcgagccaataCcccatctgtagaagaccctg	8	15	1	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	LPPR4-93	NM_014839	exon7	c.C1265T	p.T422I	CCAATACCCCATC	.	140	43	150	0	.	0	0	0	0	0	T	99771539	C	T	99771539	3	4	31	1	0	0	0	0	1	0	0	0	8954	507	18	3	1291	3	LPPR4	1	99771539	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	6832	99771539	149479082	75	5449										
LPPR4	0	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	99771739	99771739	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gctcagagccatcgagggtaGgggtgaatggagaccaccat	15	9	1	3	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	LPPR4-93	NM_014839	exon7	c.G1465T	p.G489W	AGGGTAGGGGTGA	.	318	78	344	1	.	0	0	0	0	0	T	99771739	G	T	99771739	3	4	31	1	0	0	0	0	1	0	0	0	8954	1000	35	3	1491	3	LPPR4	1	99771739	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	200	99771739	149478882	76	5450										
LPPR4	0	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	99772033	99772033	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tagccatgtccaagcagcagGgtgtcctccaaagcagcccc	10	15	0	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	LPPR4-93	NM_014839	exon7	c.G1759T	p.G587C	CAGCAGGGTGTCC	.	366	102	313	1	.	0	0	0	0	0	T	99772033	G	T	99772033	3	4	31	1	0	0	0	0	1	0	0	0	8954	1232	43	3	1785	3	LPPR4	1	99772033	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	294	99772033	149478588	77	5451										
LPPR4	0	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	99772258	99772258	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gcagccttcgccaaacttacGagctcaacgatctcaacagg	8	14	2	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	LPPR4-93	NM_014839	exon7	c.G1984T	p.E662X	ACTTACGAGCTCA	.	243	120	255	0	.	0	0	0	0	0	T	99772258	G	T	99772258	4	4	31	1	0	0	0	0	0	1	0	0	8954	1059	37	2	2010	2	LPPR4	1	99772258	Nonsense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	225	99772258	149478363	78	5452										
SASS6	163786	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	100588833	100588833	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	atccgtgtcatcagtcagacGaataactaagtcctaaaaga	7	9	3	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SASS6-70	NM_194292	exon3	c.C139T	p.R47C	TCAGACGAATAAC	.	83	38	91	0	.	0	0	0	0	0	A	100588833	G	A	100588833	3	1	31	1	0	0	0	0	1	0	0	0	13885	1058	37	1	1894	1	SASS6	1	100588833	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	816575	100588833	148661788	79	5453										
CDC14A	8556	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	100964629	100964629	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ctcttgaatggcagctcccaGccaactaccagaaattaccc	6	15	1	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CDC14A-290	NM_003672	exon15	c.G1566T	p.Q522H	CTCCCAGCCAACT	.	172	44	137	0	.	0	0	0	0	0	T	100964629	G	T	100964629	3	4	31	1	0	0	0	0	1	0	0	0	3062	962	34	3	1639	3	CDC14A	1	100964629	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	375796	100964629	148285992	80	5454										
COL11A1	1301	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	103345394	103345394	+	Silent	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gtggtaggtgaaattttgccGagcagaggcagtcagaagtt	15	5	1	3	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	COL11A1-586	NM_080629	exon66	c.C5155A	p.R1719R	TTTGCCGAGCAGA	.	137	76	142	1	.	0	0	0	0	0	T	103345394	G	T	103345394	2	4	31	1	0	0	0	0	0	0	0	1	3673	1057	37	2		2	COL11A1	1	103345394	Silent	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	2380765	103345394	145905227	81	5455										
COL11A1	1301	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	103363705	103363705	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ggaccaggtggtccatcttgGcctgcagctccagggagacc	14	13	1	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	COL11A1-586	NM_080629	exon57	c.C4314A	p.G1438G	ATCTTGGCCTGCA	.	156	75	126	1	.	0	0	0	0	0	T	103363705	G	T	103363705	2	4	31	1	0	0	0	0	0	0	0	1	3673	1190	42	3		3	COL11A1	1	103363705	Silent	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	18311	103363705	145886916	82	5456										
NTNG1	22854	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr1	108023431	108023431	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gctgctgctgctgaccacgcTgctgggaaccgccagccccc	12	18	0	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	NTNG1-140	NM_001113226	exon8	c.T1589A	p.L530Q	CCACGCTGCTGGG	.	89	34	38	0	.	0	0	0	0	0	A	108023431	T	A	108023431	3	1	31	1	0	0	0	0	1	0	0	0	10733	1580	55	5	1749	5	NTNG1	1	108023431	Missense_Mutation	SNP	T	TCGA-OR-A5KB-01A-11D-A30A-10	4659726	108023431	141227190	83	5457										
VAV3	10451	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	108138963	108138963	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cttgtagtactccacaagttCctttggaaaaaagaatccaa	6	9	0	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	VAV3-1339	NM_006113	exon25	c.G2221T	p.E741X	CAAGTTCCTTTGG	.	59	12	51	0	.	0	0	0	0	0	A	108138963	C	A	108138963	4	1	31	1	0	0	0	0	0	1	0	0	17171	869	30	3	334	3	VAV3	1	108138963	Nonsense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	115532	108138963	141111658	84	5458										
VAV3	10451	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	108417589	108417589	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tcacttttcctcattccaaaCgtctcacaacaggccgtgag	6	14	3	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	VAV3-1339	NM_006113	exon2	c.G255T	p.T85T	TCCAAACGTCTCA	.	172	31	192	0	.	0	0	0	0	0	A	108417589	C	A	108417589	2	1	31	1	0	0	0	0	0	0	0	1	17171	523	19	2		2	VAV3	1	108417589	Silent	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	278626	108417589	140833032	85	5459										
FAM102B	284611	bcgsc.ca	37	chr1	109170821	109170821	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	agagtgcctctgttccagacGaacttggtgcctgtggacat	12	10	1	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FAM102B-135	NM_001010883	exon7	c.G589T	p.E197X	CCAGACGAACTTG	.	531	210	557	4	.	0	0	0	0	0	T	109170821	G	T	109170821	4	4	31	1	0	0	0	0	0	1	0	0	5399	1059	37	2	615	2	FAM102B	1	109170821	Nonsense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	753232	109170821	140079800	86	5460										
PRPF38B	55119	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	109242505	109242505	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	aaaaatctagaaagcgtagtAgaagcaaagaacgttcccac	8	8	1	3	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PRPF38B-90	NM_018061	exon6	c.A1504G	p.R502G	CGTAGTAGAAGCA	.	156	43	188	1	.	0	0	0	0	0	G	109242505	A	G	109242505	3	3	31	1	0	0	0	0	1	0	0	0	12600	412	15	4	1526	4	PRPF38B	1	109242505	Missense_Mutation	SNP	A	TCGA-OR-A5KB-01A-11D-A30A-10	71684	109242505	140008116	87	5461										
AMIGO1	57463	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	110050171	110050171	+	Frame_Shift_Del	DEL	C	C	-													0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tgttgcctggcttgagcttgCcgttttgaccctgcccaggt					novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	AMIGO1-136	NM_020703	exon2	c.1364delG	p.G455fs	AGCTTGCCGTTTT	.	171	38	156	0	.	0	0	0	0	0	-	110050171	C	-	110050171	7	5	31	1	0	1	0	1	0	0	0	0	575	739	26	0	121	0	AMIGO1	1	110050171	Frame_Shift_Del	DEL	C	TCGA-OR-A5KB-01A-11D-A30A-10	807666	110050171	139200450	88	5462										
GPR61	83873	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	110085990	110085990	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tctttggggaggtggcctgcCgcctctacttgtttctgagc	13	11	3	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GPR61-91	NM_031936	exon2	c.C346T	p.R116C	GCCTGCCGCCTCT	.	97	49	99	0	.	0	0	0	0	0	T	110085990	C	T	110085990	3	4	31	1	0	0	0	0	1	0	0	0	6722	652	23	1	348	1	GPR61	1	110085990	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	35819	110085990	139164631	89	5463										
GNAT2	2780	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	110148630	110148630	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cagcaccatatcataggcacTgagggctgcacagaaaatga	10	10	1	3	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GNAT2-227	NM_005272	exon6	c.A682T	p.S228C	AGGCACTGAGGGC	.	269	57	264	1	.	0	0	0	0	0	A	110148630	T	A	110148630	3	1	31	1	0	0	0	0	1	0	0	0	6532	1580	55	5	394	5	GNAT2	1	110148630	Missense_Mutation	SNP	T	TCGA-OR-A5KB-01A-11D-A30A-10	62640	110148630	139101991	90	5464										
KCNC4	3749	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	110766353	110766353	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ggcatgtactactccctggcCatggccaagcagaagctgcc	11	14	0	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	KCNC4-154	NM_001039574	exon2	c.C1446A	p.A482A	CCTGGCCATGGCC	.	128	25	159	0	.	0	0	0	0	0	A	110766353	C	A	110766353	2	1	31	1	0	0	0	0	0	0	0	1	8038	581	21	3		3	KCNC4	1	110766353	Silent	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	617723	110766353	138484268	91	5465										
FAM19A3	284467	ucsc.edu;bcgsc.ca	37	chr1	113266683	113266683	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tcagatggagccctgcctgcCgggggaggagtgtaaggtgc	18	9	1	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FAM19A3-90	NM_182759	exon4	c.C314A	p.P105Q	GCCTGCCGGGGGA	.	235	112	238	3	.	0	0	0	0	0	A	113266683	C	A	113266683	3	1	31	1	0	0	0	0	1	0	0	0	5549	652	23	2	392	2	FAM19A3	1	113266683	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	2500330	113266683	135983938	92	5466										
VANGL1	81839	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	116206308	116206308	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	aactggggagagaccaccacGgccatcacaggcacctcgga	12	14	1	1	rs186509771	alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	VANGL1-226	NM_001172412	exon4	c.G231T	p.T77T	CACCACGGCCATC	.	124	33	133	0	G|0.999;A|0.000	0	0	0	0	0	T	116206308	G	T	116206308	2	4	31	1	0	0	0	0	0	0	0	1	17157	1103	39	2		2	VANGL1	1	116206308	Silent	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	2939625	116206308	133044313	93	5467										
ZNF697	90874	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	120165428	120165428	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gcttgttgcccgtgtggatgCggcggtggcggatcaggtgg	20	8	1	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ZNF697-23	NM_001080470	exon3	c.G1538T	p.R513L	TGGATGCGGCGGT	.	174	81	123	1	.	0	0	0	0	0	A	120165428	C	A	120165428	3	1	31	1	0	0	0	0	1	0	0	0	18137	768	27	2	103	2	ZNF697	1	120165428	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	3959120	120165428	129085193	94	5468										
NOTCH2	4853	hgsc.bcm.edu	37	chr1	120611964	120611964	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tcaccatgcgcgggggccgcGcagcacagccagagcgccag	15	16	1	1	rs11810554	byfrequency	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	NOTCH2-1441	NM_024408	exon1	c.C57G	p.C19W	GGCCGCGCAGCAC	.	11	7	0	0	G|0.680;C|0.320	0	0	0	0	0	C	120611964	G	C	120611964	3	2	31	1	0	0	0	0	1	0	0	0	10577	1079	38	2	7494	2	NOTCH2	1	120611964	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	446536	120611964	128638657	95	5469										
PDE4DIP	9659	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr1	144852481	144852481	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	caaggctggagtacatggcaGagcccttagggatttcacct	12	10	1	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PDE4DIP-663	NM_014644	exon44	c.C7018A	p.L2340M	ATGGCAGAGCCCT	.	102	38	44	0	.	0	0	0	0	0	T	144852481	G	T	144852481	3	4	31	1	0	0	0	0	1	0	0	0	11672	933	33	3	26	3	PDE4DIP	1	144852481	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	24240517	144852481	104398140	96	5470										
PDE4DIP	9659	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr1	144854656	144854656	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ttccctttctgttgattctcCctggataagaggaacagact	8	10	2	3	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PDE4DIP-663	NM_014644	exon42	c.G6814T	p.G2272X	ATTCTCCCTGGAT	.	225	29	155	0	.	0	0	0	0	0	A	144854656	C	A	144854656	4	1	31	1	0	0	0	0	0	1	0	0	11672	637	22	3	238	3	PDE4DIP	1	144854656	Nonsense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	2175	144854656	104395965	97	5471										
PDE4DIP	9659	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	144865885	144865885	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tctgttctcattgcagagctGaggtatggactccaggccct	11	11	2	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PDE4DIP-663	NM_014644	exon35	c.C5695G	p.Q1899E	AGAGCTGAGGTAT	.	221	15	196	0	.	0	0	0	0	0	C	144865885	G	C	144865885	3	2	31	1	0	0	0	0	1	0	0	0	11672	1299	45	3	1385	3	PDE4DIP	1	144865885	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	11229	144865885	104384736	98	5472										
ITGA10	8515	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	145533058	145533058	+	Missense_Mutation	SNP	G	G	A													0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ctgcttctgtcccacaggatGggattctttttgggatggtg					novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ITGA10-231	NM_003637	exon11	c.G1153A	p.G385R	CAGGATGGGATTC	.	74	25	44	0	.	0	0	0	0	0	A	145533058	G	A	145533058	3	1	31	1	0	0	0	0	1	0	0	0	7894	1348	47	3	1195	3	ITGA10	1	145533058	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	667173	145533058	103717563	99	5473	47	2								
ITGA10	8515	broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr1	145533059	145533059	+	Missense_Mutation	SNP	G	G	T													0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tgcttctgtcccacaggatgGgattctttttgggatggtgg					novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ITGA10-231	NM_003637	exon11	c.G1154T	p.G385V	AGGATGGGATTCT	.	76	25	46	1	.	0	0	0	0	0	T	145533059	G	T	145533059	3	4	31	1	0	0	0	0	1	0	0	0	7894	1232	43	3	1196	3	ITGA10	1	145533059	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	1	145533059	103717562	100	5474	47	2								
GJA8	2703	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	147380254	147380254	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	acttcgtgtgcaacacccagCagcctggctgcgagaacgtc	11	14	0	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GJA8-138	NM_005267	exon2	c.C172T	p.Q58X	ACCCAGCAGCCTG	.	270	75	118	0	.	0	0	0	0	0	T	147380254	C	T	147380254	4	4	31	1	0	0	0	0	0	1	0	0	6425	711	25	3	174	3	GJA8	1	147380254	Nonsense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	1847195	147380254	101870367	101	5475										
PSMD4	5710	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	151236481	151236481	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ccaagggcaagatcaccttcTgcacgggcatccgcgtggcc	12	15	2	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PSMD4-90	NM_002810	exon3	c.T259C	p.C87R	ACCTTCTGCACGG	.	339	93	201	1	.	0	0	0	0	0	C	151236481	T	C	151236481	3	2	31	1	0	0	0	0	1	0	0	0	12732	1580	55	4	269	4	PSMD4	1	151236481	Missense_Mutation	SNP	T	TCGA-OR-A5KB-01A-11D-A30A-10	3856227	151236481	98014140	102	5476										
POGZ	23126	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	151377850	151377850	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cacaagcatgcctttgctgcGctggcaagctgtgtgcttct	11	12	1	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	POGZ-93	NM_015100	exon19	c.C3661G	p.R1221G	TGCTGCGCTGGCA	.	176	29	178	1	.	0	0	0	0	0	C	151377850	G	C	151377850	3	2	31	1	0	0	0	0	1	0	0	0	12215	1087	38	2	575	2	POGZ	1	151377850	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	141369	151377850	97872771	103	5477										
POGZ	23126	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	151402135	151402135	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gctgtacgttcagcacaatcCcaacctgattcattgcattt	6	12	2	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	POGZ-93	NM_015100	exon5	c.G512C	p.G171A	ACAATCCCAACCT	.	152	31	71	0	.	0	0	0	0	0	G	151402135	C	G	151402135	3	3	31	1	0	0	0	0	1	0	0	0	12215	623	22	3	3794	3	POGZ	1	151402135	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	24285	151402135	97848486	104	5478										
THEM4	117145	hgsc.bcm.edu	37	chr1	151881885	151881885	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ggcgccggcctactggcggcAggcacagagcccccagcgtg	16	16	0	1	rs3748805		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	THEM4-522	NM_053055	exon1	c.T50G	p.L17R	GGCGGCAGGCACA	.	13	8	0	0	T|0.073;G|0.921	0	0	0	0	0	C	151881885	A	C	151881885	3	2	31	1	0	0	0	0	1	0	0	0	15895	188	7	5	696	5	THEM4	1	151881885	Missense_Mutation	SNP	A	TCGA-OR-A5KB-01A-11D-A30A-10	479750	151881885	97368736	105	5479										
TCHH	7062	hgsc.bcm.edu	37	chr1	152084432	152084432	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gcgcctcagctgctgctcgcGcctcagctgctgctcgcgcc	12	19	2	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TCHH-72	NM_007113	exon3	c.C1261G	p.R421G	GCTCGCGCCTCAG	.	56	7	2	0	.	0	0	0	0	0	C	152084432	G	C	152084432	3	2	31	1	0	0	0	0	1	0	0	0	15737	1087	38	2	4574	2	TCHH	1	152084432	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	202547	152084432	97166189	106	5480										
RPTN	126638	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	152129433	152129433	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cacagtctctgggtcatttgGtctctgttaggagataaaac	10	8	3	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	RPTN-68	NM_001122965	exon3	c.C142T	p.P48S	CATTTGGTCTCTG	.	107	27	67	0	.	0	0	0	0	0	A	152129433	G	A	152129433	3	1	31	1	0	0	0	0	1	0	0	0	13699	1261	44	3	2216	3	RPTN	1	152129433	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	45001	152129433	97121188	107	5481										
HRNR	388697	broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr1	152188311	152188311	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ttggccgtggcccaaagactGacgggagccagacccatgct	13	13	0	3	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	HRNR-93	NM_001009931	exon3	c.C5794T	p.Q1932X	AAGACTGACGGGA	.	1978	183	1106	2	.	0	0	0	0	0	A	152188311	G	A	152188311	4	1	31	1	0	0	0	0	0	1	0	0	7380	1299	45	3	2762	3	HRNR	1	152188311	Nonsense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	58878	152188311	97062310	108	5482										
FLG	2312	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	152276700	152276700	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ctggaagcagacccagaccaCctctcagagtcttctgagtg	10	13	3	4	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FLG-106	NM_002016	exon3	c.G10662T	p.R3554S	AGACCACCTCTCA	.	403	51	225	0	.	0	0	0	0	0	A	152276700	C	A	152276700	3	1	31	1	0	0	0	0	1	0	0	0	5941	506	18	3	1527	3	FLG	1	152276700	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	88389	152276700	96973921	109	5483										
FLG	2312	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	152280069	152280069	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cttcctccagtgctggtcccGgtccgtccatgggcggactc	12	16	0	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FLG-106	NM_002016	exon3	c.C7293A	p.T2431T	GGTCCCGGTCCGT	.	604	308	331	1	.	0	0	0	0	0	T	152280069	G	T	152280069	2	4	31	1	0	0	0	0	0	0	0	1	5941	1103	39	2		2	FLG	1	152280069	Silent	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	3369	152280069	96970552	110	5484										
FLG	2312	bcgsc.ca	37	chr1	152281563	152281563	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ctggaagcagacccagaccaCctctcagagtcttctgagtg	10	13	3	4	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FLG-106	NM_002016	exon3	c.G5799T	p.R1933S	AGACCACCTCTCA	.	525	64	335	2	.	0	0	0	0	0	A	152281563	C	A	152281563	3	1	31	1	0	0	0	0	1	0	0	0	5941	506	18	3	6390	3	FLG	1	152281563	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	1494	152281563	96969058	111	5485										
FLG	2312	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	152283067	152283067	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ttgaacgtccagagctttccCctgactggccacgtgcggac	11	14	0	3	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FLG-106	NM_002016	exon3	c.G4295T	p.G1432V	CTTTCCCCTGACT	.	442	116	236	1	.	0	0	0	0	0	A	152283067	C	A	152283067	3	1	31	1	0	0	0	0	1	0	0	0	5941	623	22	3	7894	3	FLG	1	152283067	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	1504	152283067	96967554	112	5486										
FLG2	388698	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	152323875	152323875	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gactctccatgttgagatctGgcttggccataagtgtgtcc	11	10	2	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FLG2-151	NM_001014342	exon3	c.C6387A	p.A2129A	AGATCTGGCTTGG	.	516	218	341	1	.	0	0	0	0	0	T	152323875	G	T	152323875	2	4	31	1	0	0	0	0	0	0	0	1	5942	1335	47	3		3	FLG2	1	152323875	Silent	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	40808	152323875	96926746	113	5487			1	30		8	7	5837	N	G_C_A	8.136916e-06
FLG2	388698	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	152326364	152326364	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tgtggatcctgactttgggtAgtgagatccagcttgtgtgt	14	6	0	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FLG2-151	NM_001014342	exon3	c.T3898A	p.Y1300N	TTGGGTAGTGAGA	.	715	182	401	1	.	0	0	0	0	0	T	152326364	A	T	152326364	3	4	31	1	0	0	0	0	1	0	0	0	5942	420	15	5	3281	5	FLG2	1	152326364	Missense_Mutation	SNP	A	TCGA-OR-A5KB-01A-11D-A30A-10	2489	152326364	96924257	114	5488			1	30		8	7	5837	N	G_C_A	8.136916e-06
FLG2	388698	ucsc.edu;bcgsc.ca	37	chr1	152326656	152326656	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ccatattggccaaatccagtGgactgacctgagtcagatat	9	10	1	3	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FLG2-151	NM_001014342	exon3	c.C3606A	p.S1202S	TCCAGTGGACTGA	.	275	125	194	2	.	0	0	0	0	0	T	152326656	G	T	152326656	2	4	31	1	0	0	0	0	0	0	0	1	5942	1335	47	3		3	FLG2	1	152326656	Silent	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	292	152326656	96923965	115	5489			1	30		8	7	5837	N	G_C_A	8.136916e-06
FLG2	388698	bcgsc.ca	37	chr1	152327047	152327047	+	Frame_Shift_Del	DEL	C	C	-													0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gttggccatagctagactgaCgtgatctagactcatattgt					novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FLG2-151	NM_001014342	exon3	c.3215delG	p.R1072fs	GACTGACGTGATC	.	533	197	322	1	.	0	0	0	0	0	-	152327047	C	-	152327047	7	5	31	1	0	1	0	1	0	0	0	0	5942	536	19	0	3964	0	FLG2	1	152327047	Frame_Shift_Del	DEL	C	TCGA-OR-A5KB-01A-11D-A30A-10	391	152327047	96923574	116	5490	48	2	1	30		8	7	5837	N	G_C_A	8.136916e-06
FLG2	388698	bcgsc.ca	37	chr1	152327048	152327048	+	Missense_Mutation	SNP	G	G	T													0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ttggccatagctagactgacGtgatctagactcatattgtc					novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FLG2-151	NM_001014342	exon3	c.C3214A	p.R1072S	ACTGACGTGATCT	.	529	210	318	2	.	0	0	0	0	0	T	152327048	G	T	152327048	3	4	31	1	0	0	0	0	1	0	0	0	5942	1145	40	2	3965	2	FLG2	1	152327048	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	1	152327048	96923573	117	5491	48	2	1	30		8	7	5837	N	G_C_A	8.136916e-06
FLG2	388698	broad.mit.edu;bcgsc.ca	37	chr1	152328724	152328724	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gtccaaaaccagaggattgtCctgagacagacccatgctgt	10	11	0	3	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FLG2-151	NM_001014342	exon3	c.G1538A	p.G513E	GATTGTCCTGAGA	.	423	41	273	1	.	0	0	0	0	0	T	152328724	C	T	152328724	3	4	31	1	0	0	0	0	1	0	0	0	5942	855	30	3	5641	3	FLG2	1	152328724	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	1676	152328724	96921897	118	5492			1	30		8	7	5837	N	G_C_A	8.136916e-06
FLG2	388698	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	152328752	152328752	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	agacccatgctgtccaaagcCagaggactgacctgagcctg	11	13	0	4	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FLG2-151	NM_001014342	exon3	c.G1510T	p.G504C	CAAAGCCAGAGGA	.	409	32	259	0	.	0	0	0	0	0	A	152328752	C	A	152328752	3	1	31	1	0	0	0	0	1	0	0	0	5942	594	21	3	5669	3	FLG2	1	152328752	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	28	152328752	96921869	119	5493			1	30		8	7	5837	N	G_C_A	8.136916e-06
FLG2	388698	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	152329711	152329711	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tccatgaatgaccacagctgGacctgtggtatcttttctga	9	10	2	3	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FLG2-151	NM_001014342	exon3	c.C551T	p.S184F	CAGCTGGACCTGT	.	190	43	146	0	.	0	0	0	0	0	A	152329711	G	A	152329711	3	1	31	1	0	0	0	0	1	0	0	0	5942	1174	41	3	6628	3	FLG2	1	152329711	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	959	152329711	96920910	120	5494			1	30		8	7	5837	N	G_C_A	8.136916e-06
SPRR2D	6703	broad.mit.edu;mdanderson.org	37	chr1	153012806	153012806	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ggcagggctgcttgcactgcTgctgttgataagacatcctg	13	10	0	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SPRR2D-68	NM_006945	exon2	c.A17T	p.Q6L	CACTGCTGCTGTT	.	73	33	34	1	.	0	0	0	0	0	A	153012806	T	A	153012806	3	1	31	1	0	0	0	0	1	0	0	0	15136	1580	55	5	205	5	SPRR2D	1	153012806	Missense_Mutation	SNP	T	TCGA-OR-A5KB-01A-11D-A30A-10	683095	153012806	96237815	121	5495										
LOR	4014	hgsc.bcm.edu	37	chr1	153233804	153233804	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gctcctccgggggcggctccGgctgcttctccagcggtggg	17	15	1	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	LOR-90	NM_000427	exon2	c.G379T	p.G127C	GGCTCCGGCTGCT	.	8	5	0	0	.	0	0	0	0	0	T	153233804	G	T	153233804	3	4	31	1	0	0	0	0	1	0	0	0	8924	1116	39	2	381	2	LOR	1	153233804	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	220998	153233804	96016817	122	5496										
PGLYRP4	57115	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	153303417	153303417	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	agtgctgcagcattgggtggTatacctgcaaaacacagcag	12	9	0	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PGLYRP4-94	NM_020393	exon9	c.A948G	p.I316M	GGGTGGTATACCT	.	193	20	120	0	.	0	0	0	0	0	C	153303417	T	C	153303417	3	2	31	1	0	0	0	0	1	0	0	0	11825	1628	57	4	177	4	PGLYRP4	1	153303417	Missense_Mutation	SNP	T	TCGA-OR-A5KB-01A-11D-A30A-10	69613	153303417	95947204	123	5497										
FAM189B	10712	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	155217919	155217919	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	aggaaacgagtgaccaggccCcgacctggccagctgccctt	12	15	0	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FAM189B-154	NM_006589	exon11	c.G1755T	p.R585R	CAGGCCCCGACCT	.	273	141	158	1	.	0	0	0	0	0	A	155217919	C	A	155217919	2	1	31	1	0	0	0	0	0	0	0	1	5533	610	22	3		3	FAM189B	1	155217919	Silent	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	1914502	155217919	94032702	124	5498										
MEX3A	92312	broad.mit.edu	37	chr1	156046986	156046986	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	caggcgtcggagtagcggctAtcgattgctgcgtcggggct	17	10	0	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MEX3A-158	NM_001093725	exon2	c.T942A	p.D314E	GCGGCTATCGATT	.	144	15	47	1	.	0	0	0	0	0	T	156046986	A	T	156046986	3	4	31	1	0	0	0	0	1	0	0	0	9537	446	16	5	624	5	MEX3A	1	156046986	Missense_Mutation	SNP	A	TCGA-OR-A5KB-01A-11D-A30A-10	829067	156046986	93203635	125	5499										
TMEM79	84283	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	156255405	156255405	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	agaaagcggcccgtgccttcGtgcctattgacctacagtgc	11	13	0	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TMEM79-90	NM_032323	exon2	c.G388T	p.V130L	GCCTTCGTGCCTA	.	299	35	163	0	.	0	0	0	0	0	T	156255405	G	T	156255405	3	4	31	1	0	0	0	0	1	0	0	0	16240	1145	40	2	390	2	TMEM79	1	156255405	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	208419	156255405	92995216	126	5500										
SH2D2A	9047	ucsc.edu;bcgsc.ca	37	chr1	156779504	156779504	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gggactggggcttgcccctgTttgatgattgggctgtactg	16	8	0	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SH2D2A-90	NM_001161441	exon6	c.A693G	p.K231K	CCCCTGTTTGATG	.	136	37	93	2	.	0	0	0	0	0	C	156779504	T	C	156779504	2	2	31	1	0	0	0	0	0	0	0	1	14267	1722	60	4		4	SH2D2A	1	156779504	Silent	SNP	T	TCGA-OR-A5KB-01A-11D-A30A-10	524099	156779504	92471117	127	5501										
FCRL4	83417	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	157559043	157559043	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cttcgtggggagccccgggcCtggcatctgtacagtccaga	14	13	1	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FCRL4-229	NM_031282	exon3	c.G258A	p.Q86Q	CCGGGCCTGGCAT	.	280	140	165	0	.	0	0	0	0	0	T	157559043	C	T	157559043	2	4	31	1	0	0	0	0	0	0	0	1	5816	680	24	3		3	FCRL4	1	157559043	Silent	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	779539	157559043	91691578	128	5502										
CD5L	922	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	157804410	157804410	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	caccacctttgcggcccggaGgctccagcctgtctggcaca	11	17	1	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CD5L-91	NM_005894	exon4	c.C505A	p.L169I	CCCGGAGGCTCCA	.	122	30	101	0	.	0	0	0	0	0	T	157804410	G	T	157804410	3	4	31	1	0	0	0	0	1	0	0	0	3033	1000	35	3	550	3	CD5L	1	157804410	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	245367	157804410	91446211	129	5503										
CD1E	913	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	158325660	158325660	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tgtggccccagtcctggcccTggccgtctgcagcttgtgtg	14	14	1	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CD1E-93	NM_001042585	exon4	c.T669A	p.P223P	TGGCCCTGGCCGT	.	216	55	104	1	.	0	0	0	0	0	A	158325660	T	A	158325660	2	1	31	1	0	0	0	0	0	0	0	1	2984	1567	55	5		5	CD1E	1	158325660	Silent	SNP	T	TCGA-OR-A5KB-01A-11D-A30A-10	521250	158325660	90924961	130	5504										
OR10T2	128360	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	158368349	158368349	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ccacaggcattccaagaactCttttcaatgcagtttttacc	5	12	2	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OR10T2-70	NM_001004475	exon1	c.G908T	p.R303I	AGAACTCTTTTCA	.	153	16	85	0	.	0	0	0	0	0	A	158368349	C	A	158368349	3	1	31	1	0	0	0	0	1	0	0	0	10948	913	32	3	38	3	OR10T2	1	158368349	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	42689	158368349	90882272	131	5505										
OR10T2	128360	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	158369178	158369178	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	aagaaagatgacaaaaagcaGcagctggagctcccccaggc	11	11	0	3	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OR10T2-70	NM_001004475	exon1	c.C79A	p.L27M	AAAGCAGCAGCTG	.	105	60	67	0	.	0	0	0	0	0	T	158369178	G	T	158369178	3	4	31	1	0	0	0	0	1	0	0	0	10948	962	34	3	867	3	OR10T2	1	158369178	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	829	158369178	90881443	132	5506										
OR10K2	391107	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	158390612	158390612	+	Silent	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ctggccagggatgagaagccGaggaagatgacctctctcac	13	11	2	3	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OR10K2-69	NM_001004476	exon1	c.C45G	p.L15L	GAAGCCGAGGAAG	.	184	53	114	0	.	0	0	0	0	0	C	158390612	G	C	158390612	2	2	31	1	0	0	0	0	0	0	0	1	10943	1045	37	2		2	OR10K2	1	158390612	Silent	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	21434	158390612	90860009	133	5507										
OR10K1	391109	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	158435408	158435408	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gtcgtcctcggcttctcatcCctggccaggctgcagcagct	11	16	1	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OR10K1-69	NM_001004473	exon1	c.C57G	p.S19S	CTCATCCCTGGCC	.	282	75	197	0	.	0	0	0	0	0	G	158435408	C	G	158435408	2	3	31	1	0	0	0	0	0	0	0	1	10942	610	22	3		3	OR10K1	1	158435408	Silent	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	44796	158435408	90815213	134	5508										
OR10X1	128367	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	158549327	158549327	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cagtttgtgccaccaagtccCaagaagaagcacatctgtaa	8	11	1	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OR10X1-69	NM_001004477	exon1	c.G363T	p.L121F	AAGTCCCAAGAAG	.	638	81	411	2	.	0	0	0	0	0	A	158549327	C	A	158549327	3	1	31	1	0	0	0	0	1	0	0	0	10951	593	21	3	612	3	OR10X1	1	158549327	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	113919	158549327	90701294	135	5509										
OR10X1	128367	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	158549352	158549353	+	Frame_Shift_Ins	INS	-	-	A													0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gaagcacatctgtaagctacINSaacctgtgactgaaatgctt					novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OR10X1-69	NM_001004477	exon1	c.338_339insT	p.C113fs	AAGCTACAACCTG	.	563	61	370	0	.	0	0	0	0	0	A	158549353	-	A	158549352	7	5	31	1	0	1	1	0	0	0	0	0	10951	478	17	0	637	0	OR10X1	1	158549352	Frame_Shift_Ins	INS	-	TCGA-OR-A5KB-01A-11D-A30A-10	25	158549352	90701269	136	5510										
SPTA1	6708	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	158589090	158589090	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tctcaaagttcttgacctgtCttgcctcttccttttgcagc	6	13	4	1	rs202169454	alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SPTA1-142	NM_003126	exon45	c.G6452T	p.R2151I	ACCTGTCTTGCCT	.	414	43	300	0	C|0.999;T|0.001	0	0	0	0	0	A	158589090	C	A	158589090	3	1	31	1	0	0	0	0	1	0	0	0	15153	913	32	3	839	3	SPTA1	1	158589090	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	39738	158589090	90661531	137	5511										
SPTA1	6708	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	158590083	158590083	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	agctccagcaaacatttaaaGtctgcttgagccctagccag	8	12	1	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SPTA1-142	NM_003126	exon44	c.C6294A	p.D2098E	TTTAAAGTCTGCT	.	255	35	170	0	.	0	0	0	0	0	T	158590083	G	T	158590083	3	4	31	1	0	0	0	0	1	0	0	0	15153	1020	36	3	1001	3	SPTA1	1	158590083	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	993	158590083	90660538	138	5512										
SPTA1	6708	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	158592778	158592778	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ataatttttttaaaccttctGtagaggcagctgtttctcca	6	8	2	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SPTA1-142	NM_003126	exon43	c.C6115G	p.Q2039E	CCTTCTGTAGAGG	.	121	27	88	0	.	0	0	0	0	0	C	158592778	G	C	158592778	3	2	31	1	0	0	0	0	1	0	0	0	15153	1386	48	3	1184	3	SPTA1	1	158592778	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	2695	158592778	90657843	139	5513										
SPTA1	6708	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	158606464	158606464	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tcatgggccaccagctccccCtctaggcgtttgtgcttctt	9	15	3	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SPTA1-142	NM_003126	exon37	c.G5277T	p.E1759D	CTCCCCCTCTAGG	.	112	29	87	0	.	0	0	0	0	0	A	158606464	C	A	158606464	3	1	31	1	0	0	0	0	1	0	0	0	15153	680	24	3	2046	3	SPTA1	1	158606464	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	13686	158606464	90644157	140	5514										
SPTA1	6708	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	158653268	158653268	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cacctctgcttcaagggattGatgcttctgatatttcccct	7	12	3	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SPTA1-142	NM_003126	exon3	c.C283A	p.Q95K	GGGATTGATGCTT	.	155	60	112	0	.	0	0	0	0	0	T	158653268	G	T	158653268	3	4	31	1	0	0	0	0	1	0	0	0	15153	1299	45	3	7176	3	SPTA1	1	158653268	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	46804	158653268	90597353	141	5515										
OR6K2	81448	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	158670301	158670301	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gtgagtattcaactggaccaCtgtgatgatgaccaggtttc	11	8	1	4	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OR6K2-69	NM_001005279	exon1	c.G142T	p.V48L	GGACCACTGTGAT	.	243	75	168	0	.	0	0	0	0	0	A	158670301	C	A	158670301	3	1	31	1	0	0	0	0	1	0	0	0	11231	565	20	3	836	3	OR6K2	1	158670301	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	17033	158670301	90580320	142	5516										
OR6N1	128372	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	158735697	158735697	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	agctcttcttcagctgcacaTacatggaaaggatgctccca	8	12	3	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OR6N1-69	NM_001005185	exon1	c.A776G	p.Y259C	TGCACATACATGG	.	368	178	213	1	.	0	0	0	0	0	C	158735697	T	C	158735697	3	2	31	1	0	0	0	0	1	0	0	0	11235	1406	49	4	165	4	OR6N1	1	158735697	Missense_Mutation	SNP	T	TCGA-OR-A5KB-01A-11D-A30A-10	65396	158735697	90514924	143	5517										
OR6N2	81442	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	158747067	158747067	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	aaatggccaggtatctatcaTaggccatggctgtaagaagg	12	7	2	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OR6N2-68	NM_001005278	exon1	c.A359T	p.Y120F	CTATCATAGGCCA	.	380	54	293	0	.	0	0	0	0	0	A	158747067	T	A	158747067	3	1	31	1	0	0	0	0	1	0	0	0	11236	1406	49	5	597	5	OR6N2	1	158747067	Missense_Mutation	SNP	T	TCGA-OR-A5KB-01A-11D-A30A-10	11370	158747067	90503554	144	5518										
CADM3	57863	hgsc.bcm.edu	37	chr1	159141616	159141616	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tgttcgcctgctgctgggcgCccggcggggccaacctctcc	14	17	1	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CADM3-92	NM_021189	exon1	c.C61A	p.P21T	TGGGCGCCCGGCG	.	72	11	12	0	.	0	0	0	0	0	A	159141616	C	A	159141616	3	1	31	1	0	0	0	0	1	0	0	0	2574	739	26	3	63	3	CADM3	1	159141616	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	394549	159141616	90109005	145	5519										
DARC	2532	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	159175764	159175764	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gaatttggggagtggctgccCtactgacactgcctgtcacc	12	12	1	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DARC-659	NM_001122951	exon1	c.C541T	p.L181L	GCTGCCCTACTGA	.	184	37	120	0	.	0	0	0	0	0	T	159175764	C	T	159175764	2	4	31	1	0	0	0	0	0	0	0	1	4246	680	24	3		3	DARC	1	159175764	Silent	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	34148	159175764	90074857	146	5520										
FCER1A	2205	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	159273889	159273889	+	Frame_Shift_Del	DEL	C	C	-													0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	aagtttgaatattgtgaatgCcaaatttgaagacagtggag					novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FCER1A-524	NM_002001	exon4	c.248delC	p.A83fs	TGAATGCCAAATT	.	207	102	175	0	.	0	0	0	0	0	-	159273889	C	-	159273889	7	5	31	1	0	1	0	1	0	0	0	0	5793	739	26	0	258	0	FCER1A	1	159273889	Frame_Shift_Del	DEL	C	TCGA-OR-A5KB-01A-11D-A30A-10	98125	159273889	89976732	147	5521										
APCS	325	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	159558001	159558001	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ttaccttgtgttttcgagccTatagtgatctctctcgtgcc	8	11	2	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	APCS-154	NM_001639	exon2	c.T175C	p.Y59H	CGAGCCTATAGTG	.	87	16	41	0	.	0	0	0	0	0	C	159558001	T	C	159558001	3	2	31	1	0	0	0	0	1	0	0	0	767	1522	53	4	181	4	APCS	1	159558001	Missense_Mutation	SNP	T	TCGA-OR-A5KB-01A-11D-A30A-10	284112	159558001	89692620	148	5522										
FCRL6	343413	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	159779392	159779392	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tcttcccagtgaagtcagaaCaggatgctgggaactactcc	10	11	2	2	rs146386650	byfrequency;alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FCRL6-93	NM_001004310	exon5	c.C805G	p.Q269E	TCAGAACAGGATG	.	220	58	140	0	C|1.000;T|0.000	0	0	0	0	0	G	159779392	C	G	159779392	3	3	31	1	0	0	0	0	1	0	0	0	5818	479	17	3	823	3	FCRL6	1	159779392	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	221391	159779392	89471229	149	5523										
SLAMF9	89886	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	159922196	159922196	+	Frame_Shift_Del	DEL	C	C	-													0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	atggaatgtataagtgctatCcccccgggagagccagctgt					novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SLAMF9-91	NM_033438	exon3	c.520delG	p.D174fs	TGCTATCCCCCCG	.	203	46	106	0	.	0	0	0	0	0	-	159922196	C	-	159922196	7	5	31	1	0	1	0	1	0	0	0	0	14406	855	30	0	357	0	SLAMF9	1	159922196	Frame_Shift_Del	DEL	C	TCGA-OR-A5KB-01A-11D-A30A-10	142804	159922196	89328425	150	5524										
IGSF8	93185	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	160063008	160063008	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ctcccaacctacagagtatgCagcatgacggcctgctgggg	12	13	0	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	IGSF8-90	NM_052868	exon4	c.G1018T	p.A340S	AGTATGCAGCATG	.	318	37	184	1	.	0	0	0	0	0	A	160063008	C	A	160063008	3	1	31	1	0	0	0	0	1	0	0	0	7625	710	25	3	835	3	IGSF8	1	160063008	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	140812	160063008	89187613	151	5525										
ATP1A4	480	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	160124894	160124894	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ggtggacccaatactgttacCccaccccccaccactccaga	6	19	0	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ATP1A4-94	NM_144699	exon3	c.C267T	p.T89T	TGTTACCCCACCC	.	175	23	88	1	.	0	0	0	0	0	T	160124894	C	T	160124894	2	4	31	1	0	0	0	0	0	0	0	1	1132	610	22	3		3	ATP1A4	1	160124894	Silent	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	61886	160124894	89125727	152	5526										
ITLN2	142683	bcgsc.ca	37	chr1	160920966	160920966	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cacccaccgtgcacttcccaCgcatgtcattctcgtgcacg	7	18	2	0	rs6680969	byfrequency	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ITLN2-91	NM_080878	exon4	c.G308A	p.R103H	TTCCCACGCATGT	.	498	13	280	0	C|0.495;T|0.505	0	0	0	0	0	T	160920966	C	T	160920966	3	4	31	1	0	0	0	0	1	0	0	0	7932	536	19	1	689	1	ITLN2	1	160920966	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	796072	160920966	88329655	153	5527										
F11R	50848	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	160970019	160970019	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	attcgtaggcatcactatccCatctttgaaccaggtgtatt	7	10	2	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	F11R-92	NM_016946	exon5	c.G508T	p.G170W	CTATCCCATCTTT	.	173	69	85	0	.	0	0	0	0	0	A	160970019	C	A	160970019	3	1	31	1	0	0	0	0	1	0	0	0	5351	594	21	3	415	3	F11R	1	160970019	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	49053	160970019	88280602	154	5528										
HSPA6	3310	ucsc.edu;bcgsc.ca	37	chr1	161496045	161496045	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	agtacaaggctgaggatgagGcccagagggacagagtggct	17	7	0	4	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	HSPA6-226	NM_002155	exon1	c.G1597T	p.A533S	GATGAGGCCCAGA	.	966	364	642	4	.	0	0	0	0	0	T	161496045	G	T	161496045	3	4	31	1	0	0	0	0	1	0	0	0	7436	1203	42	3	1599	3	HSPA6	1	161496045	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	526026	161496045	87754576	155	5529										
FCGR3A	2214	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	161519625	161519625	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	aaacagcctttccccagcccCtccacccatctctgtcaccc	3	22	2	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FCGR3A-91	NM_001127592	exon1	c.G10T	p.G4W	CAGCCCCTCCACC	.	302	171	192	0	.	0	0	0	0	0	A	161519625	C	A	161519625	3	1	31	1	0	0	0	0	1	0	0	0	5803	681	24	3	882	3	FCGR3A	1	161519625	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	23580	161519625	87730996	156	5530										
OLFML2B	25903	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	161967901	161967901	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tctggagacaccgaggttgtTtggagtgttggtcccactga	14	8	1	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OLFML2B-69	NM_015441	exon6	c.A1188T	p.Q396H	GGTTGTTTGGAGT	.	204	32	94	0	.	0	0	0	0	0	A	161967901	T	A	161967901	3	1	31	1	0	0	0	0	1	0	0	0	10887	1838	64	5	1076	5	OLFML2B	1	161967901	Missense_Mutation	SNP	T	TCGA-OR-A5KB-01A-11D-A30A-10	448276	161967901	87282720	157	5531										
OLFML2B	25903	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	161987209	161987209	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cctcctccagtttatccactCgccccaccagtttggtggtg	8	16	0	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OLFML2B-69	NM_015441	exon3	c.G527T	p.R176L	TCCACTCGCCCCA	.	124	36	92	0	.	0	0	0	0	0	A	161987209	C	A	161987209	3	1	31	1	0	0	0	0	1	0	0	0	10887	884	31	2	1749	2	OLFML2B	1	161987209	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	19308	161987209	87263412	158	5532										
OLFML2B	25903	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	161989832	161989832	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gagcctgaggtgatggtttcCacggtatagaagtcttcctt	12	8	1	3	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OLFML2B-69	NM_015441	exon2	c.G315T	p.V105V	GGTTTCCACGGTA	.	172	97	146	2	.	0	0	0	0	0	A	161989832	C	A	161989832	2	1	31	1	0	0	0	0	0	0	0	1	10887	581	21	3		3	OLFML2B	1	161989832	Silent	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	2623	161989832	87260789	159	5533										
NOS1AP	9722	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	162313643	162313643	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	agagccaagctatgagaatcGttcggacggtggggcaggcc	16	9	0	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	NOS1AP-228	NM_014697	exon6	c.G472T	p.V158F	AGAATCGTTCGGA	.	434	90	301	0	.	0	0	0	0	0	T	162313643	G	T	162313643	3	4	31	1	0	0	0	0	1	0	0	0	10571	1145	40	2	494	2	NOS1AP	1	162313643	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	323811	162313643	86936978	160	5534										
C1orf111	284680	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	162345173	162345173	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tgggctggatgcctcagtggGtactgctgtctttgcaatgt	14	8	2	0	rs139605225	alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	C1orf111-69	NM_182581	exon2	c.C124G	p.P42A	CAGTGGGTACTGC	.	374	28	204	0	G|0.999;T|0.000	0	0	0	0	0	C	162345173	G	C	162345173	3	2	31	1	0	0	0	0	1	0	0	0	1990	1261	44	3	669	3	C1orf111	1	162345173	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	31530	162345173	86905448	161	5535										
HSD17B7	51478	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	162762484	162762484	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cctctgcaagcggctgctggCggaagatgatgagcttcatc	13	11	2	3	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	HSD17B7-91	NM_016371	exon2	c.C71T	p.A24V	TGCTGGCGGAAGA	.	173	22	132	0	.	0	0	0	0	0	T	162762484	C	T	162762484	3	4	31	1	0	0	0	0	1	0	0	0	7409	768	27	1	77	1	HSD17B7	1	162762484	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	417311	162762484	86488137	162	5536										
HSD17B7	51478	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	162766425	162766425	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tgctgggatcatgcctaatcCacaactaaatatcaaagcac	6	11	2	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	HSD17B7-91	NM_016371	exon3	c.C290T	p.P97L	CTAATCCACAACT	.	145	19	121	0	.	0	0	0	0	0	T	162766425	C	T	162766425	3	4	31	1	0	0	0	0	1	0	0	0	7409	594	21	3	300	3	HSD17B7	1	162766425	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	3941	162766425	86484196	163	5537										
LMX1A	4009	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	165322434	165322434	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gaagctgtcgttgagccgcaGcagaaacctgtccaagatga	12	10	0	4	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	LMX1A-92	NM_001174069	exon3	c.C142T	p.L48L	GCCGCAGCAGAAA	.	169	68	87	0	.	0	0	0	0	0	A	165322434	G	A	165322434	2	1	31	1	0	0	0	0	0	0	0	1	8885	962	34	3		3	LMX1A	1	165322434	Silent	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	2556009	165322434	83928187	164	5538										
LRRC52	440699	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	165513609	165513609	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ggctggtatcagggtcaaagTgtccaaataattgtctgtgt	12	6	3	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	LRRC52-91	NM_001005214	exon1	c.T76G	p.C26G	TCAAAGTGTCCAA	.	299	91	191	3	.	0	0	0	0	0	G	165513609	T	G	165513609	3	3	31	1	0	0	0	0	1	0	0	0	9037	1696	59	5	78	5	LRRC52	1	165513609	Missense_Mutation	SNP	T	TCGA-OR-A5KB-01A-11D-A30A-10	191175	165513609	83737012	165	5539										
FAM78B	149297	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	166039894	166039894	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cttgttggtggggccaaccaGggtcacagtttctgtggtgt	15	8	2	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FAM78B-91	NM_001017961	exon2	c.C370A	p.L124M	CAACCAGGGTCAC	.	163	25	84	0	.	0	0	0	0	0	T	166039894	G	T	166039894	3	4	31	1	0	0	0	0	1	0	0	0	5646	991	35	3	419	3	FAM78B	1	166039894	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	526285	166039894	83210727	166	5540										
POGK	57645	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	166816741	166816741	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ctataaacagaattcccattCcctaagccagacatgatcac	4	13	1	3	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	POGK-91	NM_017542	exon4	c.C270A	p.F90L	CCCATTCCCTAAG	.	147	18	95	0	.	0	0	0	0	0	A	166816741	C	A	166816741	3	1	31	1	0	0	0	0	1	0	0	0	12214	854	30	3	280	3	POGK	1	166816741	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	776847	166816741	82433880	167	5541										
ILDR2	387597	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	166891891	166891891	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ggctgagggcccgcggcttgCcccactgctgcctcccatga	13	17	0	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ILDR2-91	NM_199351	exon8	c.G1150T	p.A384S	GGCTTGCCCCACT	.	123	58	99	1	.	0	0	0	0	0	A	166891891	C	A	166891891	3	1	31	1	0	0	0	0	1	0	0	0	7731	739	26	3	781	3	ILDR2	1	166891891	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	75150	166891891	82358730	168	5542										
MAEL	84944	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	166962004	166962004	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ttgtgaacagcgcttcctccCttgtgaaattggctgtgtta	10	9	0	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MAEL-91	NM_032858	exon4	c.C407A	p.P136H	TCCTCCCTTGTGA	.	41	5	25	0	.	0	0	0	0	0	A	166962004	C	A	166962004	3	1	31	1	0	0	0	0	1	0	0	0	9182	681	24	3	421	3	MAEL	1	166962004	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	70113	166962004	82288617	169	5543										
DUSP27	92235	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	167086597	167086597	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cgggggtcagagcagacgcaGagtgtccaggcatgctggag	18	9	1	3	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DUSP27-71	NM_001080426	exon3	c.G238T	p.E80X	GACGCAGAGTGTC	.	202	113	138	0	.	0	0	0	0	0	T	167086597	G	T	167086597	4	4	31	1	0	0	0	0	0	1	0	0	4835	943	33	3	248	3	DUSP27	1	167086597	Nonsense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	124593	167086597	82164024	170	5544										
DUSP27	92235	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	167096341	167096341	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cacggccagcgggagcattcCcctgtctgcgttctggtctg	13	14	3	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DUSP27-71	NM_001080426	exon5	c.C1973A	p.P658H	GCATTCCCCTGTC	.	416	64	255	0	.	0	0	0	0	0	A	167096341	C	A	167096341	3	1	31	1	0	0	0	0	1	0	0	0	4835	623	22	3	1991	3	DUSP27	1	167096341	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	9744	167096341	82154280	171	5545										
DUSP27	92235	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	167096491	167096491	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	caaccccaccacacccctgcCtaacctgccagtggggcctg	8	20	0	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DUSP27-71	NM_001080426	exon5	c.C2123A	p.P708H	CCCTGCCTAACCT	.	274	119	161	0	.	0	0	0	0	0	A	167096491	C	A	167096491	3	1	31	1	0	0	0	0	1	0	0	0	4835	681	24	3	2141	3	DUSP27	1	167096491	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	150	167096491	82154130	172	5546										
CD247	919	broad.mit.edu	37	chr1	167487681	167487681	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tgcctgcaggatggccgcggTgaaaagcgccttccacttca	12	13	1	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CD247-90	NM_198053	exon1	c.A22C	p.T8P	CCGCGGTGAAAAG	.	92	9	49	1	.	0	0	0	0	0	G	167487681	T	G	167487681	3	3	31	1	0	0	0	0	1	0	0	0	2994	1696	59	5	504	5	CD247	1	167487681	Missense_Mutation	SNP	T	TCGA-OR-A5KB-01A-11D-A30A-10	391190	167487681	81762940	173	5547										
RCSD1	92241	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	167659302	167659302	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	atagaaatcaccacccaatgCgagccaccctcctaaattca	4	15	2	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	RCSD1-517	NM_052862	exon4	c.C215A	p.A72E	CCAATGCGAGCCA	.	256	31	157	0	.	0	0	0	0	0	A	167659302	C	A	167659302	3	1	31	1	0	0	0	0	1	0	0	0	13220	768	27	2	229	2	RCSD1	1	167659302	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	171621	167659302	81591319	174	5548										
XCL1	6375	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	168550362	168550362	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gtgagagacgtggtcaggagCatggacaggaaatccaacac	14	8	1	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	XCL1-90	NM_002995	exon3	c.C249A	p.S83R	CAGGAGCATGGAC	.	477	173	326	0	.	0	0	0	0	0	A	168550362	C	A	168550362	3	1	31	1	0	0	0	0	1	0	0	0	17461	709	25	3	259	3	XCL1	1	168550362	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	891060	168550362	80700259	175	5549										
KIFAP3	22920	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	170015874	170015874	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ttttcctgacaatgaatcacGgcggttctgtagatagtaca	9	8	2	3	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	KIFAP3-91	NM_014970	exon3	c.C298T	p.R100C	AATCACGGCGGTT	.	278	58	161	0	.	0	0	0	0	0	A	170015874	G	A	170015874	3	1	31	1	0	0	0	0	1	0	0	0	8332	1116	39	1	2152	1	KIFAP3	1	170015874	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	1465512	170015874	79234747	176	5550										
PRRX1	5396	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr1	170633519	170633519	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	acatggtggcggcacaggcgGatgagaacgtgggcgaggct	19	8	0	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PRRX1-659	NM_006902	exon1	c.G160C	p.D54H	CAGGCGGATGAGA	.	616	72	177	0	.	0	0	0	0	0	C	170633519	G	C	170633519	3	2	31	1	0	0	0	0	1	0	0	0	12644	1174	41	3	162	3	PRRX1	1	170633519	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	617645	170633519	78617102	177	5551										
TNN	63923	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	175046899	175046899	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ctggcccgggtgaagaagctGgaggaagagatggtggagat	19	5	0	4	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TNN-138	NM_022093	exon2	c.G345T	p.L115L	GAAGCTGGAGGAA	.	459	126	311	0	.	0	0	0	0	0	T	175046899	G	T	175046899	2	4	31	1	0	0	0	0	0	0	0	1	16360	1335	47	3		3	TNN	1	175046899	Silent	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	4413380	175046899	74203722	178	5552										
TNN	63923	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	175086185	175086185	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ggtatgtggtgcgctacaccTctgccaaggacggagagacc	14	11	1	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TNN-138	NM_022093	exon10	c.T2230A	p.S744T	TACACCTCTGCCA	.	421	54	291	1	.	0	0	0	0	0	A	175086185	T	A	175086185	3	1	31	1	0	0	0	0	1	0	0	0	16360	1551	54	5	2264	5	TNN	1	175086185	Missense_Mutation	SNP	T	TCGA-OR-A5KB-01A-11D-A30A-10	39286	175086185	74164436	179	5553										
TNN	63923	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	175092664	175092664	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cctctgctgacggagagaccAgggaggttccggtggggaag	18	9	1	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TNN-138	NM_022093	exon12	c.A2779T	p.R927W	GAGACCAGGGAGG	.	444	100	309	0	.	0	0	0	0	0	T	175092664	A	T	175092664	3	4	31	1	0	0	0	0	1	0	0	0	16360	179	7	5	2821	5	TNN	1	175092664	Missense_Mutation	SNP	A	TCGA-OR-A5KB-01A-11D-A30A-10	6479	175092664	74157957	180	5554										
TNN	63923	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	175116153	175116153	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cctcatggctacagcagggaGcctgtcctgggcagaaagaa	13	11	1	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TNN-138	NM_022093	exon19	c.G3846T	p.E1282D	CAGGGAGCCTGTC	.	338	99	193	1	.	0	0	0	0	0	T	175116153	G	T	175116153	3	4	31	1	0	0	0	0	1	0	0	0	16360	962	34	3	3916	3	TNN	1	175116153	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	23489	175116153	74134468	181	5555										
TNR	7143	ucsc.edu;bcgsc.ca	37	chr1	175348815	175348815	+	Silent	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gcttcactgttatcccactcGaggtcaaggctggttgctgt	11	11	2	0	rs139768853	byfrequency;alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TNR-324	NM_003285	exon9	c.C1836A	p.L612L	CCACTCGAGGTCA	.	269	134	193	2	G|0.998;A|0.002	0	0	0	0	0	T	175348815	G	T	175348815	2	4	31	1	0	0	0	0	0	0	0	1	16375	1045	37	2		2	TNR	1	175348815	Silent	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	232662	175348815	73901806	182	5556										
TNR	7143	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	175362928	175362928	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	agtgttacctttggaatgaaGctgatttcccacccatcgaa	8	10	0	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TNR-324	NM_003285	exon6	c.C1344A	p.S448R	AATGAAGCTGATT	.	227	72	149	1	.	0	0	0	0	0	T	175362928	G	T	175362928	3	4	31	1	0	0	0	0	1	0	0	0	16375	962	34	3	2804	3	TNR	1	175362928	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	14113	175362928	73887693	183	5557										
TNR	7143	ucsc.edu;bcgsc.ca	37	chr1	175372387	175372387	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ccgctggccgcagtcctcacCaacgtagccctcctcgcata	8	19	1	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TNR-324	NM_003285	exon4	c.G865T	p.G289C	CCTCACCAACGTA	.	377	145	282	2	.	0	0	0	0	0	A	175372387	C	A	175372387	3	1	31	1	0	0	0	0	1	0	0	0	16375	594	21	3	3291	3	TNR	1	175372387	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	9459	175372387	73878234	184	5558										
PAPPA2	60676	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	176526124	176526124	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tcttcacatttccaaccttgGcccaagcattcccttaaaca	3	15	2	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PAPPA2-548	NM_020318	exon2	c.G666T	p.W222C	ACCTTGGCCCAAG	.	215	62	146	0	.	0	0	0	0	0	T	176526124	G	T	176526124	3	4	31	1	0	0	0	0	1	0	0	0	11462	1212	42	3	668	3	PAPPA2	1	176526124	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	1153737	176526124	72724497	185	5559										
PAPPA2	60676	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	176564188	176564188	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	acgacttgaggttctccaggGctttgagccagagcctgaga	13	10	1	4	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PAPPA2-548	NM_020318	exon3	c.G1448T	p.G483V	TCCAGGGCTTTGA	.	196	80	126	1	.	0	0	0	0	0	T	176564188	G	T	176564188	3	4	31	1	0	0	0	0	1	0	0	0	11462	1203	42	3	1454	3	PAPPA2	1	176564188	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	38064	176564188	72686433	186	5560										
PAPPA2	60676	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	176769205	176769205	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ctttccccttagagcattgtGtgcactggccggcgtcaatg	11	12	1	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PAPPA2-548	NM_020318	exon21	c.G5139T	p.V1713V	CATTGTGTGCACT	.	108	10	65	0	.	0	0	0	0	0	T	176769205	G	T	176769205	2	4	31	1	0	0	0	0	0	0	0	1	11462	1364	48	3		3	PAPPA2	1	176769205	Silent	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	205017	176769205	72481416	187	5561										
ASTN1	460	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	176845691	176845691	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	accttgagccttgacatcatCcaccacggggcatggggtct	11	13	2	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ASTN1-319	NM_207108	exon21	c.G3445T	p.D1149Y	CATCATCCACCAC	.	296	151	209	1	.	0	0	0	0	0	A	176845691	C	A	176845691	3	1	31	1	0	0	0	0	1	0	0	0	1065	855	30	3	455	3	ASTN1	1	176845691	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	76486	176845691	72404930	188	5562										
ASTN1	460	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	176863813	176863813	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tcacatgacacagggggcagGacgaggggcatcgtcccttg	15	11	1	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ASTN1-319	NM_207108	exon17	c.C2825A	p.S942Y	GGGCAGGACGAGG	.	137	40	92	0	.	0	0	0	0	0	T	176863813	G	T	176863813	3	4	31	1	0	0	0	0	1	0	0	0	1065	1174	41	3	1091	3	ASTN1	1	176863813	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	18122	176863813	72386808	189	5563										
TOR3A	64222	hgsc.bcm.edu	37	chr1	179051300	179051300	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ggcgccagctttggctctttTtcctgctgctgctcccgggc	12	15	1	0	rs2296377	byfrequency	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TOR3A-90	NM_022371	exon1	c.T37C	p.F13L	CTCTTTTTCCTGC	.	15	15	0	0	T|0.229;C|0.771	0	0	0	0	0	C	179051300	T	C	179051300	3	2	31	1	0	0	0	0	1	0	0	0	16414	1841	64	4	39	4	TOR3A	1	179051300	Missense_Mutation	SNP	T	TCGA-OR-A5KB-01A-11D-A30A-10	2187487	179051300	70199321	190	5564										
TDRD5	163589	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	179620086	179620086	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gggtagtggatgaatatgtaGatggaatccttaacattttt	11	3	0	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TDRD5-94	NM_001199091	exon12	c.G1885A	p.D629N	TATGTAGATGGAA	.	340	91	165	0	.	0	0	0	0	0	A	179620086	G	A	179620086	3	1	31	1	0	0	0	0	1	0	0	0	15770	942	33	3	1927	3	TDRD5	1	179620086	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	568786	179620086	69630535	191	5565										
LHX4	89884	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	180240552	180240552	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gctaagcggccccggaccacCatcacagccaagcagctgga	11	16	1	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	LHX4-91	NM_033343	exon4	c.C489A	p.T163T	GACCACCATCACA	.	554	134	345	2	.	0	0	0	0	0	A	180240552	C	A	180240552	2	1	31	1	0	0	0	0	0	0	0	1	8796	581	21	3		3	LHX4	1	180240552	Silent	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	620466	180240552	69010069	192	5566										
CACNA1E	777	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	181702776	181702776	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ggtcatcagccagagcgagcCtgacctctcctgcatcacgg	11	15	4	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CACNA1E-95	NM_000721	exon21	c.C3152A	p.P1051H	GCGAGCCTGACCT	.	973	256	531	1	.	0	0	0	0	0	A	181702776	C	A	181702776	3	1	31	1	0	0	0	0	1	0	0	0	2548	681	24	3	3234	3	CACNA1E	1	181702776	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	1462224	181702776	67547845	193	5567										
CACNA1E	777	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	181767816	181767816	+	Missense_Mutation	SNP	C	C	A													0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ggctactagcctgggccgttCcaacaccatcggctcagccc					novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CACNA1E-95	NM_001205293	exon48	c.C6788A	p.S2263Y	GCCGTTCCAACAC	.	217	21	117	0	.	0	0	0	0	0	A	181767816	C	A	181767816	3	1	31	1	0	0	0	0	1	0	0	0	2548	855	30	3	6845	3	CACNA1E	1	181767816	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	65040	181767816	67482805	194	5568	49	2								
CACNA1E	777	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	181767817	181767817	+	Silent	SNP	C	C	A													0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gctactagcctgggccgttcCaacaccatcggctcagcccc					novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CACNA1E-95	NM_001205293	exon48	c.C6789A	p.S2263S	CCGTTCCAACACC	.	217	21	114	0	.	0	0	0	0	0	A	181767817	C	A	181767817	2	1	31	1	0	0	0	0	0	0	0	1	2548	581	21	3		3	CACNA1E	1	181767817	Silent	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	1	181767817	67482804	195	5569	49	2								
ZNF648	127665	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	182027141	182027141	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tgtcctgggagtccacttgtGccatgatgttcaggcgcttc	12	11	1	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ZNF648-91	NM_001009992	exon2	c.C5A	p.A2E	ACTTGTGCCATGA	.	280	100	164	1	.	0	0	0	0	0	T	182027141	G	T	182027141	3	4	31	1	0	0	0	0	1	0	0	0	18100	1319	46	3	1705	3	ZNF648	1	182027141	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	259324	182027141	67223480	196	5570										
LAMC2	3918	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	183195953	183195953	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ggggcaattctgccaggattGtgcttctggctacaagagag	14	8	2	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	LAMC2-93	NM_005562	exon9	c.G1187T	p.C396F	AGGATTGTGCTTC	.	217	17	163	0	.	0	0	0	0	0	T	183195953	G	T	183195953	3	4	31	1	0	0	0	0	1	0	0	0	8637	1377	48	3	1221	3	LAMC2	1	183195953	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	1168812	183195953	66054668	197	5571										
PLA2G4A	5321	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	186880385	186880385	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tgtttggtattacagctcatGcccagacctacgatttagta	8	9	1	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PLA2G4A-721	NM_024420	exon7	c.G422T	p.C141F	GCTCATGCCCAGA	.	186	63	116	0	.	0	0	0	0	0	T	186880385	G	T	186880385	3	4	31	1	0	0	0	0	1	0	0	0	12030	1319	46	3	444	3	PLA2G4A	1	186880385	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	3684432	186880385	62370236	198	5572										
FAM5C	339479	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	190067548	190067548	+	Frame_Shift_Del	DEL	T	T	-													0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	taccattgggaccattggacTtgatgcgacttctcaggtag					novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FAM5C-228	NM_199051	exon8	c.1901delA	p.K634fs	TTGGACTTGATGC	.	161	87	134	0	.	0	0	0	0	0	-	190067548	T	-	190067548	7	5	31	1	0	1	0	1	0	0	0	0	5613	1609	56	0	403	0	FAM5C	1	190067548	Frame_Shift_Del	DEL	T	TCGA-OR-A5KB-01A-11D-A30A-10	3187163	190067548	59183073	199	5573	50	3								
FAM5C	339479	hgsc.bcm.edu	37	chr1	190067549	190067550	+	Frame_Shift_Del	DEL	TG	TG	-													0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	accattgggaccattggactTgatgcgacttctcaggtaga					novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	TG	TG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FAM5C-228	NM_199051	exon8	c.1899_1900del	p.633_634del	TGGACTTGATGCG	.	158	0	131	0	.	0	0	0	0	0	-	190067550	TG	-	190067549	7	5	31	1	0	1	0	1	0	0	0	0	5613	1821	63	0	404	0	FAM5C	1	190067549	Frame_Shift_Del	DEL	TG	TCGA-OR-A5KB-01A-11D-A30A-10	1	190067549	59183072	200	5574	50	3								
FAM5C	339479	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	chr1	190067550	190067550	+	Silent	SNP	G	G	A													0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ccattgggaccattggacttGatgcgacttctcaggtagat					novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FAM5C-228	NM_199051	exon8	c.C1899T	p.I633I	GGACTTGATGCGA	.	155	88	130	0	.	0	0	0	0	0	A	190067550	G	A	190067550	2	1	31	1	0	0	0	0	0	0	0	1	5613	1280	45	3		3	FAM5C	1	190067550	Silent	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	1	190067550	59183071	201	5575	50	3								
RGS18	64407	bcgsc.ca	37	chr1	192127869	192127869	+	Missense_Mutation	SNP	C	C	A													0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tcaggaaaagaagaaacaagCaaagaagccaaaatcaggta					novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	RGS18-229	NM_130782	exon1	c.C102A	p.S34R	AACAAGCAAAGAA	.	271	105	234	4	.	0	0	0	0	0	A	192127869	C	A	192127869	3	1	31	1	0	0	0	0	1	0	0	0	13335	709	25	3	104	3	RGS18	1	192127869	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	2060319	192127869	57122752	202	5576	51	2								
RGS18	64407	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	192127877	192127877	+	Missense_Mutation	SNP	C	C	A													0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	agaagaaacaagcaaagaagCcaaaatcaggtaaaattgta					novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	RGS18-229	NM_130782	exon1	c.C110A	p.A37D	AAGAAGCCAAAAT	.	259	60	230	0	.	0	0	0	0	0	A	192127877	C	A	192127877	3	1	31	1	0	0	0	0	1	0	0	0	13335	739	26	3	112	3	RGS18	1	192127877	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	8	192127877	57122744	203	5577	51	2								
RGS18	64407	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	192153625	192153625	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	caaatcttaggagacgatcaCgctcatttacctgcaatgaa	7	10	3	2	rs200020460	alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	RGS18-229	NM_130782	exon5	c.C649A	p.R217S	CGATCACGCTCAT	.	250	90	243	1	C|0.999;T|0.001	0	0	0	0	0	A	192153625	C	A	192153625	3	1	31	1	0	0	0	0	1	0	0	0	13335	536	19	2	667	2	RGS18	1	192153625	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	25748	192153625	57096996	204	5578										
RGS1	5996	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	192548286	192548286	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gatcaatattgacttccgcaCtcgagaatctacagccaaga	7	11	2	3	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	RGS1-226	NM_002922	exon5	c.C464A	p.T155N	TCCGCACTCGAGA	.	238	59	201	0	.	0	0	0	0	0	A	192548286	C	A	192548286	3	1	31	1	0	0	0	0	1	0	0	0	13327	565	20	3	482	3	RGS1	1	192548286	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	394661	192548286	56702335	205	5579										
CFHR3	10878	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	196749007	196749007	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tacagggtaactctacagaaGttgcctgccatcctggctac	9	12	1	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CFHR3-90	NM_021023	exon3	c.G334C	p.V112L	ACAGAAGTTGCCT	.	618	300	414	0	.	0	0	0	0	0	C	196749007	G	C	196749007	3	2	31	1	0	0	0	0	1	0	0	0	3292	1029	36	3	344	3	CFHR3	1	196749007	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	4200721	196749007	52501614	206	5580										
CFHR2	3080	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	196920020	196920020	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ttgtggaaaatggtcattctGaatcttcaggacaaacacat	8	7	4	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CFHR2-93	NM_005666	exon3	c.G292C	p.E98Q	CATTCTGAATCTT	.	204	17	155	0	.	0	0	0	0	0	C	196920020	G	C	196920020	3	2	31	1	0	0	0	0	1	0	0	0	3291	1291	45	3	302	3	CFHR2	1	196920020	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	171013	196920020	52330601	207	5581										
CFHR5	81494	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	196964954	196964954	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tagtggaatatgattgcaatCctaattttataataaacggg	8	4	0	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CFHR5-154	NM_030787	exon5	c.C715G	p.P239A	TGCAATCCTAATT	.	289	142	200	0	.	0	0	0	0	0	G	196964954	C	G	196964954	3	3	31	1	0	0	0	0	1	0	0	0	3294	855	30	3	733	3	CFHR5	1	196964954	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	44934	196964954	52285667	208	5582										
ASPM	259266	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	197059995	197059995	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	attacctgaattttaatgatTccactagtgaatttttcctg	5	7	0	3	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ASPM-615	NM_018136	exon23	c.A9621T	p.G3207G	AATGATTCCACTA	.	62	23	45	0	.	0	0	0	0	0	A	197059995	T	A	197059995	2	1	31	1	0	0	0	0	0	0	0	1	1057	1770	62	5		5	ASPM	1	197059995	Silent	SNP	T	TCGA-OR-A5KB-01A-11D-A30A-10	95041	197059995	52190626	209	5583										
ASPM	259266	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	197113117	197113117	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ttctgctcttctgcatttccTagtaatatagcttggtgttt	7	8	3	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ASPM-615	NM_001206846	exon2	c.A411T	p.L137L	ATTTCCTAGTAAT	.	127	44	114	0	.	0	0	0	0	0	A	197113117	T	A	197113117	2	1	31	1	0	0	0	0	0	0	0	1	1057	1509	53	5		5	ASPM	1	197113117	Silent	SNP	T	TCGA-OR-A5KB-01A-11D-A30A-10	53122	197113117	52137504	210	5584										
KIF21B	23046	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	200943940	200943940	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ggtgtgaagttgtccacgttCcagaccttgatgacacccgc	11	12	0	4	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	KIF21B-96	NM_001252102	exon34	c.G4716T	p.W1572C	CACGTTCCAGACC	.	379	94	186	0	.	0	0	0	0	0	A	200943940	C	A	200943940	3	1	31	1	0	0	0	0	1	0	0	0	8310	856	30	3	205	3	KIF21B	1	200943940	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	3830823	200943940	48306681	211	5585										
KIF21B	23046	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	200971454	200971454	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	atcactatagccctcagcgcCatcctctcctatcactcgct	4	18	4	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	KIF21B-96	NM_017596	exon9	c.G1237T	p.G413C	CAGCGCCATCCTC	.	193	53	132	0	.	0	0	0	0	0	A	200971454	C	A	200971454	3	1	31	1	0	0	0	0	1	0	0	0	8310	594	21	3	3741	3	KIF21B	1	200971454	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	27514	200971454	48279167	212	5586										
CACNA1S	779	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	201009798	201009799	+	Missense_Mutation	DNP	CA	CA	AG													0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ctgggcattgccctctgggtCagcagtcccttcagcatctc					novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	CA	CA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CACNA1S-94	NM_000069	exon42	c.T5177C	p.L1726P	TGGGTCAGCAGTC	.	140	0	74	0	.	0	0	0	0	0	AG	201009799	CA	AG	201009798	3	1	31	1	0	0	0	0	1	0	0	0	2553	813	29	3	455	3	CACNA1S	1	201009798	Missense_Mutation	DNP	CA	TCGA-OR-A5KB-01A-11D-A30A-10	38344	201009798	48240823	213	5587										
CACNA1S	779	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	201047167	201047167	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	catgaagtactggcgcaggcCcagcccgtacatcttcatca	9	14	3	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CACNA1S-94	NM_000069	exon11	c.G1459T	p.G487C	GCAGGCCCAGCCC	.	625	338	369	0	.	0	0	0	0	0	A	201047167	C	A	201047167	3	1	31	1	0	0	0	0	1	0	0	0	2553	623	22	3	4298	3	CACNA1S	1	201047167	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	37369	201047167	48203454	214	5588										
IGFN1	91156	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	201181975	201181975	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ccgcaggctccagagcttccGgttctctgcaggagaaagat	12	12	1	3	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	IGFN1-71	NM_001164586	exon12	c.G7954T	p.G2652C	GCTTCCGGTTCTC	.	242	137	148	1	.	0	0	0	0	0	T	201181975	G	T	201181975	3	4	31	1	0	0	0	0	1	0	0	0	7611	1116	39	2	7996	2	IGFN1	1	201181975	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	134808	201181975	48068646	215	5589										
KDM5B	10765	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	202715062	202715062	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ttgtaagattctgctcgaagCttcaatgcattcatcatagg	8	8	4	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	KDM5B-273	NM_006618	exon16	c.G2247T	p.K749N	TCGAAGCTTCAAT	.	120	33	84	1	.	0	0	0	0	0	A	202715062	C	A	202715062	3	1	31	1	0	0	0	0	1	0	0	0	8155	796	28	3	2435	3	KDM5B	1	202715062	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	1533087	202715062	46535559	216	5590										
ADIPOR1	51094	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	202915739	202915739	+	Splice_Site	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ctccaacgtccctcccagacCtagaacatatacactttctc	3	17	1	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ADIPOR1-90	NM_015999	exon5	c.259-1G>T	.	CCAGACCTAGAAC	.	367	68	217	1	.	0	0	0	0	0	A	202915739	C	A	202915739	5	1	31	1	0	0	0	0	0	0	1	0	318	695	24	3	889	3	ADIPOR1	1	202915739	Splice_Site	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	200677	202915739	46334882	217	5591										
PPFIA4	8497	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	203028334	203028334	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	acagactccgaattcagtatGcaggagcctatggtgcctgc	11	11	1	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PPFIA4-230	NM_015053	exon7	c.G918T	p.M306I	CAGTATGCAGGAG	.	811	294	468	0	.	0	0	0	0	0	T	203028334	G	T	203028334	3	4	31	1	0	0	0	0	1	0	0	0	12341	1319	46	3	944	3	PPFIA4	1	203028334	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	112595	203028334	46222287	218	5592										
BTG2	7832	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	203276418	203276418	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ggtggacccctatgaggtgtCctaccgcattggggaggacg	16	10	0	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	BTG2-651	NM_006763	exon2	c.C329T	p.S110F	AGGTGTCCTACCG	.	140	39	104	0	.	0	0	0	0	0	T	203276418	C	T	203276418	3	4	31	1	0	0	0	0	1	0	0	0	1557	855	30	3	335	3	BTG2	1	203276418	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	248084	203276418	45974203	219	5593										
PRELP	5549	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	203452438	203452438	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cccaggcccaggcccaggccCacacccagctttcctcagcc	8	22	1	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PRELP-516	NM_201348	exon2	c.C126A	p.P42P	CAGGCCCACACCC	.	245	107	140	1	.	0	0	0	0	0	A	203452438	C	A	203452438	2	1	31	1	0	0	0	0	0	0	0	1	12505	581	21	3		3	PRELP	1	203452438	Silent	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	176020	203452438	45798183	220	5594										
PRELP	5549	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	203452762	203452762	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	agggtgctggagaaactgccCggcctggtgttcctctacat	13	11	1	1	rs200569548		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PRELP-516	NM_201348	exon2	c.C450T	p.P150P	ACTGCCCGGCCTG	.	316	106	202	0	C|0.999;T|0.000	0	0	0	0	0	T	203452762	C	T	203452762	2	4	31	1	0	0	0	0	0	0	0	1	12505	639	23	1		1	PRELP	1	203452762	Silent	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	324	203452762	45797859	221	5595										
LAX1	54900	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	203743202	203743202	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gcatgattatgtcaatgtccCcacagcagaagagattgctg	10	9	1	3	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	LAX1-514	NM_017773	exon5	c.C590A	p.P197H	ATGTCCCCACAGC	.	196	66	99	0	.	0	0	0	0	0	A	203743202	C	A	203743202	3	1	31	1	0	0	0	0	1	0	0	0	8670	623	22	3	653	3	LAX1	1	203743202	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	290440	203743202	45507419	222	5596										
ZC3H11A	9877	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	203807096	203807096	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	agttctccctctttataggcGgtgacagtgatcctccatta	8	11	2	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ZC3H11A-515	NM_014827	exon13	c.G877T	p.G293C	ATAGGCGGTGACA	.	246	115	190	0	.	0	0	0	0	0	T	203807096	G	T	203807096	3	4	31	1	0	0	0	0	1	0	0	0	17597	1116	39	2	911	2	ZC3H11A	1	203807096	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	63894	203807096	45443525	223	5597										
NFASC	23114	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	204937426	204937426	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ttcatgtatccccagggcacCgcgagcagccagatggtgct	12	13	1	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	NFASC-139	NM_001160332	exon9	c.C789A	p.T263T	GGGCACCGCGAGC	.	226	98	136	0	.	0	0	0	0	0	A	204937426	C	A	204937426	2	1	31	1	0	0	0	0	0	0	0	1	10388	639	23	2		2	NFASC	1	204937426	Silent	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	1130330	204937426	44313195	224	5598										
NFASC	23114	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	204966446	204966446	+	Silent	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	atcgccaccaccaccaccgtCgccacaactactacaaccac	3	21	0	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	NFASC-139	NM_001005388	exon25	c.C2931A	p.V977V	CACCGTCGCCACA	.	477	166	338	1	.	0	0	0	0	0	A	204966446	C	A	204966446	2	1	31	1	0	0	0	0	0	0	0	1	10388	871	31	2		2	NFASC	1	204966446	Silent	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	29020	204966446	44284175	225	5599										
CNTN2	6900	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	205039030	205039030	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gcaggcagggcagcactcacTggcagaccgcccgggtgcct	15	15	1	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CNTN2-91	NM_005076	exon18	c.T2272A	p.W758R	ACTCACTGGCAGA	.	549	66	258	2	.	0	0	0	0	0	A	205039030	T	A	205039030	3	1	31	1	0	0	0	0	1	0	0	0	3647	1580	55	5	2338	5	CNTN2	1	205039030	Missense_Mutation	SNP	T	TCGA-OR-A5KB-01A-11D-A30A-10	72584	205039030	44211591	226	5600										
RASSF5	83593	hgsc.bcm.edu	37	chr1	206681002	206681002	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tattggaccccgagccgccgCgctatctacagagcctgagc	11	15	1	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	RASSF5-660	NM_182663	exon1	c.C67T	p.R23C	CCGCCGCGCTATC	.	88	15	2	0	.	0	0	0	0	0	T	206681002	C	T	206681002	3	4	31	1	0	0	0	0	1	0	0	0	13124	768	27	1	69	1	RASSF5	1	206681002	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	1641972	206681002	42569619	227	5601										
FAIM3	9214	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	207087142	207087142	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tgactttctgggtctttcccCggtctgtgttcatgcccgct	10	13	4	1	rs200225589	alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FAIM3-90	NM_001193338	exon2	c.G335T	p.R112L	TTTCCCCGGTCTG	.	212	80	116	1	C|0.999;T|0.000	0	0	0	0	0	A	207087142	C	A	207087142	3	1	31	1	0	0	0	0	1	0	0	0	5393	652	23	2	865	2	FAIM3	1	207087142	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	406140	207087142	42163479	228	5602										
FCAMR	83953	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	207139094	207139094	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tcctcccgccagcagaggggCgaggaaggcctgagtgttcc	15	13	0	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FCAMR-91	NM_032029	exon4	c.G279T	p.S93S	GAGGGGCGAGGAA	.	235	85	168	0	.	0	0	0	0	0	A	207139094	C	A	207139094	2	1	31	1	0	0	0	0	0	0	0	1	5791	755	27	2		2	FCAMR	1	207139094	Silent	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	51952	207139094	42111527	229	5603										
CR2	1380	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	207649601	207649601	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ttcatagggtgtccacctccGcctaagacccctaacgggaa	9	14	1	1	rs184057547		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CR2-232	NM_001006658	exon15	c.G2739A	p.P913P	ACCTCCGCCTAAG	.	274	43	177	1	G|0.999;A|0.000	0	0	0	0	0	A	207649601	G	A	207649601	2	1	31	1	0	0	0	0	0	0	0	1	3848	1074	38	1		1	CR2	1	207649601	Silent	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	510507	207649601	41601020	230	5604										
CR1	1378	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	207753724	207753724	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gcgtctctgcactgcacaccCcagggagactggagccctga	12	15	1	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CR1-93	NM_000651	exon30	c.C5076A	p.P1692P	CACACCCCAGGGA	.	285	72	160	1	.	0	0	0	0	0	A	207753724	C	A	207753724	2	1	31	1	0	0	0	0	0	0	0	1	3846	610	22	3		3	CR1	1	207753724	Silent	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	104123	207753724	41496897	231	5605										
PLXNA2	5362	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	208202235	208202235	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	agagcagcttgttggaggggGagtccttgcccagccggtgc	17	10	0	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PLXNA2-92	NM_025179	exon30	c.C5378G	p.S1793C	GAGGGGGAGTCCT	.	333	43	197	0	.	0	0	0	0	0	C	208202235	G	C	208202235	3	2	31	1	0	0	0	0	1	0	0	0	12149	1174	41	3	318	3	PLXNA2	1	208202235	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	448511	208202235	41048386	232	5606										
LAMB3	3914	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	209795997	209795997	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gctgggcactggattgaatcTgtgaggcagattcctcggct	14	9	1	3	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	LAMB3-156	NM_000228	exon18	c.A2585G	p.Q862R	TGAATCTGTGAGG	.	200	60	134	0	.	0	0	0	0	0	C	209795997	T	C	209795997	3	2	31	1	0	0	0	0	1	0	0	0	8634	1580	55	4	957	4	LAMB3	1	209795997	Missense_Mutation	SNP	T	TCGA-OR-A5KB-01A-11D-A30A-10	1593762	209795997	39454624	233	5607										
LAMB3	3914	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	209796407	209796407	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cgccatcaagaaggccccacCggccctgggaaggacacccc	11	18	1	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	LAMB3-156	NM_000228	exon17	c.G2476T	p.G826C	CCCCACCGGCCCT	.	425	208	280	1	.	0	0	0	0	0	A	209796407	C	A	209796407	3	1	31	1	0	0	0	0	1	0	0	0	8634	652	23	2	1070	2	LAMB3	1	209796407	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	410	209796407	39454214	234	5608										
TRAF3IP3	80342	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	209936416	209936416	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	atttcttctctttccagttaCggagttgcagttctggataa	8	8	3	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TRAF3IP3-291	NM_025228	exon6	c.C555A	p.Y185X	CAGTTACGGAGTT	.	141	54	101	0	.	0	0	0	0	0	A	209936416	C	A	209936416	4	1	31	1	0	0	0	0	0	1	0	0	16480	547	19	2	569	2	TRAF3IP3	1	209936416	Nonsense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	140009	209936416	39314205	235	5609										
TRAF3IP3	80342	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	209936707	209936707	+	Splice_Site	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	acccttgttctttctctccaGgaaatcatccagctttctga	5	13	4	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TRAF3IP3-291	NM_025228	exon7	c.577-1G>A	.	TCTCCAGGAAATC	.	226	67	147	1	.	0	0	0	0	0	A	209936707	G	A	209936707	5	1	31	1	0	0	0	0	0	0	1	0	16480	1014	35	3	594	3	TRAF3IP3	1	209936707	Splice_Site	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	291	209936707	39313914	236	5610										
IRF6	3664	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	209964145	209964145	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tgggacccaggtccccatagAagagtcggcagccctgaggg	15	12	0	3	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	IRF6-92	NM_006147	exon7	c.T755C	p.F252S	CCATAGAAGAGTC	.	161	46	88	0	.	0	0	0	0	0	G	209964145	A	G	209964145	3	3	31	1	0	0	0	0	1	0	0	0	7855	246	9	4	660	4	IRF6	1	209964145	Missense_Mutation	SNP	A	TCGA-OR-A5KB-01A-11D-A30A-10	27438	209964145	39286476	237	5611										
KCNH1	3756	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	210857441	210857441	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ctttcgtttcatgcgttcttCctcttcacgtttcacatcgc	5	14	5	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	KCNH1-94	NM_172362	exon11	c.G2152C	p.E718Q	GTTCTTCCTCTTC	.	55	9	31	0	.	0	0	0	0	0	G	210857441	C	G	210857441	3	3	31	1	0	0	0	0	1	0	0	0	8052	864	30	3	821	3	KCNH1	1	210857441	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	893296	210857441	38393180	238	5612										
KCNH1	3756	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	210971060	210971060	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	caccttgcggttcaggtgcaCgcagatgtcggctctcatgt	12	12	2	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	KCNH1-94	NM_172362	exon9	c.G1705T	p.V569L	GGTGCACGCAGAT	.	400	207	233	0	.	0	0	0	0	0	A	210971060	C	A	210971060	3	1	31	1	0	0	0	0	1	0	0	0	8052	536	19	2	1276	2	KCNH1	1	210971060	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	113619	210971060	38279561	239	5613										
KCNH1	3756	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	211264025	211264025	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	attttcacaaagaaccacacAggtgtccctgaaaggaatat	7	9	1	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	KCNH1-94	NM_002238	exon4	c.T318A	p.P106P	CCACACAGGTGTC	.	83	47	43	0	.	0	0	0	0	0	T	211264025	A	T	211264025	2	4	31	1	0	0	0	0	0	0	0	1	8052	175	7	5		5	KCNH1	1	211264025	Silent	SNP	A	TCGA-OR-A5KB-01A-11D-A30A-10	292965	211264025	37986596	240	5614										
INTS7	25896	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	212141280	212141280	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	atgcctggtaaagatctccaTatcgagaagcaaggcttcga	10	9	1	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	INTS7-90	NM_001199812	exon15	c.A2054G	p.Y685C	TCTCCATATCGAG	.	60	24	23	0	.	0	0	0	0	0	C	212141280	T	C	212141280	3	2	31	1	0	0	0	0	1	0	0	0	7804	1406	49	4	858	4	INTS7	1	212141280	Missense_Mutation	SNP	T	TCGA-OR-A5KB-01A-11D-A30A-10	877255	212141280	37109341	241	5615										
INTS7	25896	broad.mit.edu;bcgsc.ca	37	chr1	212190255	212190255	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gtgcagagaagtttgcagcaGcaaaaacagcagcttcaact	10	9	1	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	INTS7-90	NM_001199812	exon4	c.C482G	p.A161G	GCAGCAGCAAAAA	.	209	19	130	1	.	0	0	0	0	0	C	212190255	G	C	212190255	3	2	31	1	0	0	0	0	1	0	0	0	7804	971	34	3	2474	3	INTS7	1	212190255	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	48975	212190255	37060366	242	5616										
KCNK2	3776	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	215408289	215408289	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gttccagcgggccacctccaTcaagcggaagctctcggcag	12	15	2	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	KCNK2-90	NM_001017425	exon7	c.T1082A	p.I361N	CCTCCATCAAGCG	.	112	50	91	0	.	0	0	0	0	0	A	215408289	T	A	215408289	3	1	31	1	0	0	0	0	1	0	0	0	8087	1435	50	5	1151	5	KCNK2	1	215408289	Missense_Mutation	SNP	T	TCGA-OR-A5KB-01A-11D-A30A-10	3218034	215408289	33842332	243	5617										
USH2A	7399	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	215822060	215822060	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tccaatagagtagttagtgaAggcttgaaggccatggagag	14	5	0	4	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	USH2A-115	NM_206933	exon66	c.T14392C	p.F4798L	TAGTGAAGGCTTG	.	249	128	141	0	.	0	0	0	0	0	G	215822060	A	G	215822060	3	3	31	1	0	0	0	0	1	0	0	0	17074	72	3	4	1244	4	USH2A	1	215822060	Missense_Mutation	SNP	A	TCGA-OR-A5KB-01A-11D-A30A-10	413771	215822060	33428561	244	5618										
USH2A	7399	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	215953376	215953376	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gaactccttgggtagtagctGcaactacctgaagacgtagg	12	9	0	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	USH2A-115	NM_206933	exon55	c.C10748A	p.A3583E	GTAGCTGCAACTA	.	168	22	121	0	.	0	0	0	0	0	T	215953376	G	T	215953376	3	4	31	1	0	0	0	0	1	0	0	0	17074	1319	46	3	4932	3	USH2A	1	215953376	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	131316	215953376	33297245	245	5619										
USH2A	7399	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	215963428	215963428	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	atcattccagttgaaatcttGtcagagcaaacatatttcaa	5	8	4	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	USH2A-115	NM_206933	exon51	c.C10155A	p.D3385E	AATCTTGTCAGAG	.	85	20	60	0	.	0	0	0	0	0	T	215963428	G	T	215963428	3	4	31	1	0	0	0	0	1	0	0	0	17074	1368	48	3	5541	3	USH2A	1	215963428	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	10052	215963428	33287193	246	5620										
USH2A	7399	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	216052284	216052284	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	attaccccctgagcaagcaaCaatggtgacagaataattag	8	9	0	3	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	USH2A-115	NM_206933	exon42	c.G8380T	p.V2794F	AAGCAACAATGGT	.	329	166	209	0	.	0	0	0	0	0	A	216052284	C	A	216052284	3	1	31	1	0	0	0	0	1	0	0	0	17074	478	17	3	7352	3	USH2A	1	216052284	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	88856	216052284	33198337	247	5621										
USH2A	7399	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	216144042	216144042	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	aaactccaaggagcaaatccGtaagcacgatagctgagttc	9	10	0	1	rs147615382	alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	USH2A-115	NM_206933	exon36	c.C6882A	p.Y2294X	AAATCCGTAAGCA	.	225	32	138	1	G|1.000;A|0.000	0	0	0	0	0	T	216144042	G	T	216144042	4	4	31	1	0	0	0	0	0	1	0	0	17074	1140	40	2	8874	2	USH2A	1	216144042	Nonsense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	91758	216144042	33106579	248	5622										
USH2A	7399	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	216390770	216390770	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tgttgacatccaagtggcttGcactgggaacacaagcatca	10	10	1	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	USH2A-115	NM_206933	exon15	c.C3116A	p.A1039E	TGGCTTGCACTGG	.	268	82	220	1	.	0	0	0	0	0	T	216390770	G	T	216390770	3	4	31	1	0	0	0	0	1	0	0	0	17074	1319	46	3	12738	3	USH2A	1	216390770	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	246728	216390770	32859851	249	5623										
USH2A	7399	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	216498841	216498841	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	atcattaggaatgcagtaccGctgtgccaaagggtggaccc	12	10	1	0	rs111033272		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	USH2A-115	NM_206933	exon6	c.C949A	p.R317R	AGTACCGCTGTGC	.	175	76	113	0	.	0	0	0	0	0	T	216498841	G	T	216498841	2	4	31	1	0	0	0	0	0	0	0	1	17074	1086	38	2		2	USH2A	1	216498841	Silent	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	108071	216498841	32751780	250	5624										
TGFB2	7042	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	218607682	218607682	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tgacttaatgttttccagacAggaacctgggatttaaaata	8	6	0	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TGFB2-710	NM_001135599	exon5	c.A730C	p.R244R	CCAGACAGGAACC	.	161	22	98	0	.	0	0	0	0	0	C	218607682	A	C	218607682	2	2	31	1	0	0	0	0	0	0	0	1	15855	179	7	5		5	TGFB2	1	218607682	Silent	SNP	A	TCGA-OR-A5KB-01A-11D-A30A-10	2108841	218607682	30642939	251	5625										
EPRS	2058	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	220152840	220152840	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cataacaccaatagttcgagTtgtcaggccccaggagtttt	9	10	1	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	EPRS-92	NM_004446	exon27	c.A3829C	p.T1277P	TTCGAGTTGTCAG	.	192	108	105	0	.	0	0	0	0	0	G	220152840	T	G	220152840	3	3	31	1	0	0	0	0	1	0	0	0	5204	1725	60	5	733	5	EPRS	1	220152840	Missense_Mutation	SNP	T	TCGA-OR-A5KB-01A-11D-A30A-10	1545158	220152840	29097781	252	5626										
EPRS	2058	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	220178699	220178699	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	atcccctagcattagctcttCatgctgtaaagatgatataa	6	9	2	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	EPRS-92	NM_004446	exon16	c.G1954T	p.E652X	GCTCTTCATGCTG	.	49	20	21	0	.	0	0	0	0	0	A	220178699	C	A	220178699	4	1	31	1	0	0	0	0	0	1	0	0	5204	835	29	3	2652	3	EPRS	1	220178699	Nonsense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	25859	220178699	29071922	253	5627										
BPNT1	10380	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	220247364	220247364	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gggccaatgaagaacatatgCtcatctgtgccaatcggtca	10	10	3	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	BPNT1-91	NM_006085	exon3	c.G170A	p.S57N	CATATGCTCATCT	.	159	34	95	0	.	0	0	0	0	0	T	220247364	C	T	220247364	3	4	31	1	0	0	0	0	1	0	0	0	1497	797	28	3	784	3	BPNT1	1	220247364	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	68665	220247364	29003257	254	5628										
HHIPL2	79802	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	222705308	222705308	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	caactctgtacatttgttacCtgcttcatcttcagcaaagg	6	11	4	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	HHIPL2-69	NM_024746	exon6	c.G1723A	p.G575R	TGTTACCTGCTTC	.	145	49	77	0	.	0	0	0	0	0	T	222705308	C	T	222705308	3	4	31	1	0	0	0	0	1	0	0	0	7115	695	24	3	467	3	HHIPL2	1	222705308	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	2457944	222705308	26545313	255	5629										
CDC42BPA	8476	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	227261686	227261686	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	agctgacatatccagtttcgCaaaacgacgcattttccagg	8	11	0	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CDC42BPA-549	NM_003607	exon19	c.G2614C	p.A872P	GTTTCGCAAAACG	.	56	17	48	0	.	0	0	0	0	0	G	227261686	C	G	227261686	3	3	31	1	0	0	0	0	1	0	0	0	3078	710	25	3	2617	3	CDC42BPA	1	227261686	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	4556378	227261686	21988935	256	5630										
PRSS38	339501	bcgsc.ca	37	chr1	228004947	228004947	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tctatgacatgtacgtaggcCtcgtaaacctcagggtggcc	11	11	2	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PRSS38-92	NM_183062	exon3	c.C349A	p.L117I	GTAGGCCTCGTAA	.	173	101	78	2	.	0	0	0	0	0	A	228004947	C	A	228004947	3	1	31	1	0	0	0	0	1	0	0	0	12659	681	24	3	359	3	PRSS38	1	228004947	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	743261	228004947	21245674	257	5631										
PRSS38	339501	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	228005027	228005027	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ctgcaccccacatatgagatGtaccaccccatcggaggtga	9	14	0	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PRSS38-92	NM_183062	exon3	c.G429C	p.M143I	TGAGATGTACCAC	.	221	53	129	0	.	0	0	0	0	0	C	228005027	G	C	228005027	3	2	31	1	0	0	0	0	1	0	0	0	12659	1377	48	3	439	3	PRSS38	1	228005027	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	80	228005027	21245594	258	5632										
OBSCN	84033	broad.mit.edu;bcgsc.ca	37	chr1	228465520	228465520	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	caggagagatccaatttgtaGccgaaaatgcagaatcgcga	11	8	0	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OBSCN-403	NM_001271223	exon30	c.G8107A	p.A2703T	TTTGTAGCCGAAA	.	533	116	323	2	.	0	0	0	0	0	A	228465520	G	A	228465520	3	1	31	1	0	0	0	0	1	0	0	0	10841	971	34	3	6914	3	OBSCN	1	228465520	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	460493	228465520	20785101	259	5633										
OBSCN	84033	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr1	228469788	228469788	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ggcagctccagccgcttccaGgccacacgtcagggccgaaa	12	16	1	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OBSCN-403	NM_001271223	exon36	c.G9639T	p.Q3213H	CTTCCAGGCCACA	.	543	322	368	2	.	0	0	0	0	0	T	228469788	G	T	228469788	3	4	31	1	0	0	0	0	1	0	0	0	10841	991	35	3	8470	3	OBSCN	1	228469788	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	4268	228469788	20780833	260	5634										
OBSCN	84033	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	228496916	228496916	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	aggaggcccgctgggctttaGgaggggtgcccctgcaggcc	18	12	0	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OBSCN-403	NM_001271223	exon59	c.G15727T	p.G5243X	GCTTTAGGAGGGG	.	365	98	232	1	.	0	0	0	0	0	T	228496916	G	T	228496916	4	4	31	1	0	0	0	0	0	1	0	0	10841	1001	35	3	13042	3	OBSCN	1	228496916	Nonsense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	27128	228496916	20753705	261	5635										
OBSCN	84033	bcgsc.ca	37	chr1	228506745	228506745	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	attagcgagctgccagaggaGgacggccgctcgcagcgcct	15	13	0	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OBSCN-403	NM_001271223	exon65	c.G17163T	p.E5721D	AGAGGAGGACGGC	.	447	237	220	4	.	0	0	0	0	0	T	228506745	G	T	228506745	3	4	31	1	0	0	0	0	1	0	0	0	10841	991	35	3	14502	3	OBSCN	1	228506745	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	9829	228506745	20743876	262	5636										
PGBD5	79605	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	230468646	230468646	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ggaagtgtcctttgttgtacCagcagatcaaggacatgttc	11	8	1	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PGBD5-93	NM_001258311	exon5	c.G1217A	p.W406X	TTGTACCAGCAGA	.	358	177	180	0	.	0	0	0	0	0	T	230468646	C	T	230468646	4	4	31	1	0	0	0	0	0	1	0	0	11813	595	21	3	369	3	PGBD5	1	230468646	Nonsense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	1961901	230468646	18781975	263	5637										
TRIM67	440730	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	231349591	231349591	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ggcgtgtgcaagggggccacCgtgggcgtgctgctggacct	19	11	0	0	rs200465476	alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TRIM67-229	NM_001004342	exon9	c.C2154A	p.T718T	GGCCACCGTGGGC	.	666	345	383	0	C|0.998;T|0.002	0	0	0	0	0	A	231349591	C	A	231349591	2	1	31	1	0	0	0	0	0	0	0	1	16578	639	23	2		2	TRIM67	1	231349591	Silent	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	880945	231349591	17901030	264	5638										
DISC1	27185	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	231885794	231885794	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	acctggcagcacaagtccagGctgccttgcgccgtggggcc	14	15	0	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DISC1-91	NM_001164537	exon5	c.G1336C	p.A446P	GTCCAGGCTGCCT	.	276	74	158	0	.	0	0	0	0	0	C	231885794	G	C	231885794	3	2	31	1	0	0	0	0	1	0	0	0	4549	1203	42	3	1613	3	DISC1	1	231885794	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	536203	231885794	17364827	265	5639										
ARID4B	51742	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	235357437	235357437	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	accatttcaggagatggattTgtctgaaatggtggtttgga	13	4	2	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ARID4B-228	NM_016374	exon19	c.A2016C	p.T672T	TGGATTTGTCTGA	.	107	54	69	0	.	0	0	0	0	0	G	235357437	T	G	235357437	2	3	31	1	0	0	0	0	0	0	0	1	920	1799	63	5		5	ARID4B	1	235357437	Silent	SNP	T	TCGA-OR-A5KB-01A-11D-A30A-10	3471643	235357437	13893184	266	5640										
LYST	1130	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	235904873	235904873	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gcattcggaaggtctccttaCaagaccacagaattttagtc	8	10	1	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	LYST-143	NM_000081	exon31	c.G8207C	p.C2736S	TCCTTACAAGACC	.	189	42	128	0	.	0	0	0	0	0	G	235904873	C	G	235904873	3	3	31	1	0	0	0	0	1	0	0	0	9156	478	17	3	3290	3	LYST	1	235904873	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	547436	235904873	13345748	267	5641										
LYST	1130	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	235966313	235966313	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	acactgagaatcctcagcttCttctgaaaaatcaccaggct	6	12	4	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	LYST-143	NM_000081	exon8	c.G3607C	p.E1203Q	CAGCTTCTTCTGA	.	69	8	45	0	.	0	0	0	0	0	G	235966313	C	G	235966313	3	3	31	1	0	0	0	0	1	0	0	0	9156	922	32	3	7982	3	LYST	1	235966313	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	61440	235966313	13284308	268	5642										
LYST	1130	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	235972428	235972428	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	acaagtgctgctcaaggaagCctgctgtagtaagcgcaagc	12	10	1	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	LYST-143	NM_000081	exon5	c.G1690T	p.A564S	AGGAAGCCTGCTG	.	238	124	135	0	.	0	0	0	0	0	A	235972428	C	A	235972428	3	1	31	1	0	0	0	0	1	0	0	0	9156	739	26	3	9911	3	LYST	1	235972428	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	6115	235972428	13278193	269	5643										
LYST	1130	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	235973763	235973763	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ttctaaatgtaatttttcctGagtggatctttgtgaacttg	8	5	2	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	LYST-143	NM_000081	exon5	c.C355G	p.Q119E	TTTCCTGAGTGGA	.	50	15	32	0	.	0	0	0	0	0	C	235973763	G	C	235973763	3	2	31	1	0	0	0	0	1	0	0	0	9156	1299	45	3	11246	3	LYST	1	235973763	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	1335	235973763	13276858	270	5644										
NID1	4811	broad.mit.edu;bcgsc.ca	37	chr1	236157101	236157101	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cagccccggaggaatgggtcGctgtgggtctgtcgcccccg	16	14	1	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	NID1-154	NM_002508	exon13	c.C2599G	p.R867G	TGGGTCGCTGTGG	.	325	149	96	3	.	0	0	0	0	0	C	236157101	G	C	236157101	3	2	31	1	0	0	0	0	1	0	0	0	10443	1095	38	2	1176	2	NID1	1	236157101	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	183338	236157101	13093520	271	5645										
ACTN2	88	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	236902766	236902766	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ctggagatcaacttcaacacGctgcagaccaagctgcggat	10	12	2	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ACTN2-95	NM_001103	exon10	c.G1041C	p.T347T	CAACACGCTGCAG	.	274	139	170	1	.	0	0	0	0	0	C	236902766	G	C	236902766	2	2	31	1	0	0	0	0	0	0	0	1	205	1074	38	2		2	ACTN2	1	236902766	Silent	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	745665	236902766	12347855	272	5646										
ACTN2	88	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	236902815	236902815	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gtcctgccttcatgccctccGagggcaagatggtgtcggtg	14	12	1	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ACTN2-95	NM_001103	exon10	c.G1090C	p.E364Q	CCCTCCGAGGGCA	.	193	54	128	0	.	0	0	0	0	0	C	236902815	G	C	236902815	3	2	31	1	0	0	0	0	1	0	0	0	205	1059	37	2	1128	2	ACTN2	1	236902815	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	49	236902815	12347806	273	5647										
RYR2	6262	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	237664056	237664056	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	accaaaccaacatctgttaaGaactgatgatgtcatcagtt	6	9	3	3	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	RYR2-158	NM_001035	exon21	c.G2249T	p.R750I	TGTTAAGAACTGA	.	237	59	161	0	.	0	0	0	0	0	T	237664056	G	T	237664056	3	4	31	1	0	0	0	0	1	0	0	0	13804	942	33	3	2331	3	RYR2	1	237664056	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	761241	237664056	11586565	274	5648										
RYR2	6262	ucsc.edu;bcgsc.ca	37	chr1	237666655	237666655	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cctccacctgggtatgctccTtgttatgaagctgttctgcc	9	13	1	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	RYR2-158	NM_001035	exon22	c.T2463A	p.P821P	TGCTCCTTGTTAT	.	188	100	119	2	.	0	0	0	0	0	A	237666655	T	A	237666655	2	1	31	1	0	0	0	0	0	0	0	1	13804	1596	56	5		5	RYR2	1	237666655	Silent	SNP	T	TCGA-OR-A5KB-01A-11D-A30A-10	2599	237666655	11583966	275	5649										
RYR2	6262	ucsc.edu;bcgsc.ca	37	chr1	237801682	237801682	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tcgttatttggctggttgtgGactgcaaagttgccagatgc	13	7	0	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	RYR2-158	NM_001035	exon45	c.G6818T	p.G2273V	GTTGTGGACTGCA	.	270	81	166	3	.	0	0	0	0	0	T	237801682	G	T	237801682	3	4	31	1	0	0	0	0	1	0	0	0	13804	1174	41	3	6996	3	RYR2	1	237801682	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	135027	237801682	11448939	276	5650										
RYR2	6262	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	237811775	237811775	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gtggaacctgacatgtctgcGgggttttgcccagatcacaa	12	10	2	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	RYR2-158	NM_001035	exon49	c.G7374T	p.A2458A	GTCTGCGGGGTTT	.	269	33	179	0	.	0	0	0	0	0	T	237811775	G	T	237811775	2	4	31	1	0	0	0	0	0	0	0	1	13804	1103	39	2		2	RYR2	1	237811775	Silent	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	10093	237811775	11438846	277	5651										
RYR2	6262	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	237870480	237870480	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ctgcacagccctgaactcagAgcacatgaacacacttctag	7	14	2	3	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	RYR2-158	NM_001035	exon68	c.A9812T	p.E3271V	ACTCAGAGCACAT	.	271	72	173	0	.	0	0	0	0	0	T	237870480	A	T	237870480	3	4	31	1	0	0	0	0	1	0	0	0	13804	304	11	5	10082	5	RYR2	1	237870480	Missense_Mutation	SNP	A	TCGA-OR-A5KB-01A-11D-A30A-10	58705	237870480	11380141	278	5652										
RYR2	6262	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	237890397	237890397	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tctacctcaggtggaacatcCtcagagatctaaaaaggctg	9	10	4	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	RYR2-158	NM_001035	exon76	c.C10736G	p.P3579R	AACATCCTCAGAG	.	119	51	74	0	.	0	0	0	0	0	G	237890397	C	G	237890397	3	3	31	1	0	0	0	0	1	0	0	0	13804	681	24	3	11038	3	RYR2	1	237890397	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	19917	237890397	11360224	279	5653										
RYR2	6262	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	237947789	237947789	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ttgacccttatgcgaatgctCagtctgaagagcctgaagaa	10	9	2	5	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	RYR2-158	NM_001035	exon90	c.C12777T	p.L4259L	AATGCTCAGTCTG	.	157	42	128	1	.	0	0	0	0	0	T	237947789	C	T	237947789	2	4	31	1	0	0	0	0	0	0	0	1	13804	813	29	3		3	RYR2	1	237947789	Silent	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	57392	237947789	11302832	280	5654										
RYR2	6262	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	237947964	237947964	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gcctgctgcttgggggaagcCtcgtcgaaggtgctaaaaag	15	9	0	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	RYR2-158	NM_001035	exon90	c.C12952A	p.L4318I	GGAAGCCTCGTCG	.	182	93	104	0	.	0	0	0	0	0	A	237947964	C	A	237947964	3	1	31	1	0	0	0	0	1	0	0	0	13804	681	24	3	13310	3	RYR2	1	237947964	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	175	237947964	11302657	281	5655										
RYR2	6262	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	237954769	237954770	+	Missense_Mutation	DNP	CC	CC	AA													0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ttacaacatgagaatgttagCcttatttgtcgcatttgcta					novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	CC	CC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	RYR2-158	NM_001035	exon93	c.C13518A	p.A4512E	GTTAGCCTTATTT	.	139	8	99	0	.	0	0	0	0	0	AA	237954770	CC	AA	237954769	3	1	31	1	0	0	0	0	1	0	0	0	13804	739	26	3	13887	3	RYR2	1	237954769	Missense_Mutation	DNP	CC	TCGA-OR-A5KB-01A-11D-A30A-10	6805	237954769	11295852	282	5656										
ZP4	57829	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	238048794	238048794	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gtaggggtctgttctgtgaaGgatggagacctccacgtaaa	14	7	2	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ZP4-93	NM_021186	exon8	c.C1057G	p.L353V	TGTGAAGGATGGA	.	387	57	262	0	.	0	0	0	0	0	C	238048794	G	C	238048794	3	2	31	1	0	0	0	0	1	0	0	0	18255	1000	35	3	585	3	ZP4	1	238048794	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	94025	238048794	11201827	283	5657										
ZP4	57829	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	238049161	238049161	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tgggagagagttgctacttaCtgagtagctgcagctgacat	13	7	0	3	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ZP4-93	NM_021186	exon7	c.G865T	p.V289L	TACTTACTGAGTA	.	182	29	134	0	.	0	0	0	0	0	A	238049161	C	A	238049161	3	1	31	1	0	0	0	0	1	0	0	0	18255	565	20	3	781	3	ZP4	1	238049161	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	367	238049161	11201460	284	5658										
FMN2	56776	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr1	240371788	240371788	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ctgctccagctcccccactcCctccacctgggacaggaatc	7	20	0	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FMN2-145	NM_020066	exon5	c.C3676A	p.P1226T	CCACTCCCTCCAC	.	214	71	142	0	.	0	0	0	0	0	A	240371788	C	A	240371788	3	1	31	1	0	0	0	0	1	0	0	0	5969	623	22	3	3694	3	FMN2	1	240371788	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	2322627	240371788	8878833	285	5659										
KMO	8564	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	241725612	241725612	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	atgggtacatggagttgactAttccacctaagaacggagat	11	7	0	3	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	KMO-92	NM_003679	exon7	c.A595T	p.I199F	TTGACTATTCCAC	.	422	155	229	1	.	0	0	0	0	0	T	241725612	A	T	241725612	3	4	31	1	0	0	0	0	1	0	0	0	8445	449	16	5	621	5	KMO	1	241725612	Missense_Mutation	SNP	A	TCGA-OR-A5KB-01A-11D-A30A-10	1353824	241725612	7525009	286	5660										
WDR64	128025	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	241846794	241846794	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tttttctgtttctaggaaaaTtattttgtcataaaaccaat	4	5	3	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	WDR64-91	NM_144625	exon6	c.T600C	p.N200N	GGAAAATTATTTT	.	98	21	82	0	.	0	0	0	0	0	C	241846794	T	C	241846794	2	2	31	1	0	0	0	0	0	0	0	1	17353	1490	52	4		4	WDR64	1	241846794	Silent	SNP	T	TCGA-OR-A5KB-01A-11D-A30A-10	121182	241846794	7403827	287	5661										
CEP170	9859	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	243349332	243349332	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tttctgttttaacaatttccCatgtggaacaccatgccccc	5	13	1	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CEP170-93	NM_014812	exon10	c.G1315T	p.G439W	ATTTCCCATGTGG	.	305	116	218	0	.	0	0	0	0	0	A	243349332	C	A	243349332	3	1	31	1	0	0	0	0	1	0	0	0	3256	594	21	3	3513	3	CEP170	1	243349332	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	1502538	243349332	5901289	288	5662										
CEP170	9859	broad.mit.edu;bcgsc.ca	37	chr1	243354352	243354352	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tcaagtacactggaacatcaCttttaatgcttttagaatcc	5	9	2	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CEP170-93	NM_001042405	exon8	c.G1076T	p.S359I	ACATCACTTTTAA	.	228	53	202	1	.	0	0	0	0	0	A	243354352	C	A	243354352	3	1	31	1	0	0	0	0	1	0	0	0	3256	565	20	3	3760	3	CEP170	1	243354352	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	5020	243354352	5896269	289	5663										
KIF26B	55083	ucsc.edu;bcgsc.ca	37	chr1	245583020	245583020	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cagcgagacttccacaggcaCatcggtggccgcctccttct	10	16	1	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	KIF26B-25	NM_018012	exon4	c.C1139T	p.T380I	CAGGCACATCGGT	.	496	119	282	3	.	0	0	0	0	0	T	245583020	C	T	245583020	3	4	31	1	0	0	0	0	1	0	0	0	8316	478	17	3	1153	3	KIF26B	1	245583020	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	2228668	245583020	3667601	290	5664										
KIF26B	55083	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	245766029	245766029	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ccttccaaaagagaggcaacCaggttcctccaaagatgttt	8	11	0	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	KIF26B-25	NM_018012	exon6	c.C1501G	p.Q501E	GGCAACCAGGTTC	.	315	29	164	0	.	0	0	0	0	0	G	245766029	C	G	245766029	3	3	31	1	0	0	0	0	1	0	0	0	8316	595	21	3	1523	3	KIF26B	1	245766029	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	183009	245766029	3484592	291	5665										
KIF26B	55083	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	chr1	245849362	245849362	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ggcctcacccaggagcgtccCgggcagcagtagccagcaca	13	16	1	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	KIF26B-25	NM_018012	exon12	c.C3077A	p.P1026Q	GCGTCCCGGGCAG	.	181	77	12	0	.	0	0	0	0	0	A	245849362	C	A	245849362	3	1	31	1	0	0	0	0	1	0	0	0	8316	652	23	2	3123	2	KIF26B	1	245849362	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	83333	245849362	3401259	292	5666										
KIF26B	55083	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	245849536	245849536	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ggagtacaagccacccagctCtccttcccagagatgcaaag	9	14	1	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	KIF26B-25	NM_018012	exon12	c.C3251A	p.S1084Y	CCAGCTCTCCTTC	.	366	208	171	1	.	0	0	0	0	0	A	245849536	C	A	245849536	3	1	31	1	0	0	0	0	1	0	0	0	8316	913	32	3	3297	3	KIF26B	1	245849536	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	174	245849536	3401085	293	5667										
OR2C3	81472	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	247694914	247694914	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	aataccatgtgccggagggcGctcttcacctccgtgttcct	10	14	2	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OR2C3-70	NM_198074	exon2	c.C900G	p.S300R	GAGGGCGCTCTTC	.	274	83	121	0	.	0	0	0	0	0	C	247694914	G	C	247694914	3	2	31	1	0	0	0	0	1	0	0	0	11022	1078	38	2	66	2	OR2C3	1	247694914	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	1845378	247694914	1555707	294	5668										
OR2G3	81469	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	247769018	247769018	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gacccttgtgggaaacttcaCcataatcatcatctcatatc	5	12	4	0	rs200831993		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OR2G3-68	NM_001001914	exon1	c.C131A	p.T44N	ACTTCACCATAAT	.	208	54	123	2	C|0.999;A|0.001	0	0	0	0	0	A	247769018	C	A	247769018	3	1	31	1	0	0	0	0	1	0	0	0	11028	507	18	3	133	3	OR2G3	1	247769018	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	74104	247769018	1481603	295	5669										
OR2G3	81469	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	247769252	247769252	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ggctgacatggccttggatcGgtacattgctgtctgcaaac	12	10	1	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OR2G3-68	NM_001001914	exon1	c.G365A	p.R122Q	TGGATCGGTACAT	.	379	47	222	1	.	0	0	0	0	0	A	247769252	G	A	247769252	3	1	31	1	0	0	0	0	1	0	0	0	11028	1116	39	1	367	1	OR2G3	1	247769252	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	234	247769252	1481369	296	5670										
OR11L1	391189	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	248004443	248004443	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tacatggagatcatggtcccGtagtagagagtgacaacagc	12	8	1	3	rs201677584	alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OR11L1-71	NM_001001959	exon1	c.C756A	p.Y252X	GGTCCCGTAGTAG	.	332	132	188	0	G|0.999;A|0.000	0	0	0	0	0	T	248004443	G	T	248004443	4	4	31	1	0	0	0	0	0	1	0	0	10959	1140	40	2	216	2	OR11L1	1	248004443	Nonsense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	235191	248004443	1246178	297	5671										
TRIM58	25893	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	248039228	248039228	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	taaagctggatcccgccacgGcgcacccgagtctgctcttg	11	15	2	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TRIM58-96	NM_015431	exon6	c.G898T	p.A300S	GCCACGGCGCACC	.	127	12	59	0	.	0	0	0	0	0	T	248039228	G	T	248039228	3	4	31	1	0	0	0	0	1	0	0	0	16569	1203	42	3	920	3	TRIM58	1	248039228	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	34785	248039228	1211393	298	5672										
OR2L8	391190	broad.mit.edu;bcgsc.ca	37	chr1	248112694	248112694	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ccatcaatcatttcttctgtGatgtcccagcaatggtgact	7	11	4	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OR2L8-70	NM_001001963	exon1	c.G535T	p.D179Y	TTCTGTGATGTCC	.	209	48	112	2	.	0	0	0	0	0	T	248112694	G	T	248112694	3	4	31	1	0	0	0	0	1	0	0	0	11038	1290	45	3	537	3	OR2L8	1	248112694	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	73466	248112694	1137927	299	5673										
OR2L8	391190	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr1	248113085	248113085	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	agtgagtcagagaatctgctCtgtgaaaatgtagaaacact	10	6	3	4	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OR2L8-70	NM_001001963	exon1	c.C926A	p.S309Y	TCTGCTCTGTGAA	.	41	24	29	0	.	0	0	0	0	0	A	248113085	C	A	248113085	3	1	31	1	0	0	0	0	1	0	0	0	11038	913	32	3	928	3	OR2L8	1	248113085	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	391	248113085	1137536	300	5674										
OR2L2	26246	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	248201688	248201688	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tttcctaatggctctaattgGaaatctatccatgattcttc	5	9	3	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OR2L2-70	NM_001004686	exon1	c.G119T	p.G40V	TAATTGGAAATCT	.	259	34	187	0	.	0	0	0	0	0	T	248201688	G	T	248201688	3	4	31	1	0	0	0	0	1	0	0	0	11036	1174	41	3	121	3	OR2L2	1	248201688	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	88603	248201688	1048933	301	5675										
OR2L3	391192	broad.mit.edu	37	chr1	248224518	248224518	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ccatcaatcatttcttctgtGatgtcccagcaatggtgact	7	11	4	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OR2L3-68	NM_001004687	exon1	c.G535T	p.D179Y	TTCTGTGATGTCC	.	531	37	264	2	.	0	0	0	0	0	T	248224518	G	T	248224518	3	4	31	1	0	0	0	0	1	0	0	0	11037	1290	45	3	537	3	OR2L3	1	248224518	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	22830	248224518	1026103	302	5676										
OR2L13	284521	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	248263017	248263017	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cgtgttctgaaggcttactcCtgacctccatggcctacgac	9	14	1	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OR2L13-70	NM_175911	exon3	c.C340A	p.L114M	TTACTCCTGACCT	.	174	29	91	0	.	0	0	0	0	0	A	248263017	C	A	248263017	3	1	31	1	0	0	0	0	1	0	0	0	11035	680	24	3	342	3	OR2L13	1	248263017	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	38499	248263017	987604	303	5677										
OR2L13	284521	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	248263390	248263390	+	Frame_Shift_Del	DEL	C	C	-													0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ggggagaaaaaaggccttcaCcaccatttcaacacatttaa					novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OR2L13-70	NM_175911	exon3	c.713delC	p.T238fs	CCTTCACCACCAT	.	154	83	98	0	.	0	0	0	0	0	-	248263390	C	-	248263390	7	5	31	1	0	1	0	1	0	0	0	0	11035	507	18	0	715	0	OR2L13	1	248263390	Frame_Shift_Del	DEL	C	TCGA-OR-A5KB-01A-11D-A30A-10	373	248263390	987231	304	5678	52	2								
OR2L13	284521	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	248263394	248263394	+	Silent	SNP	C	C	G													0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	agaaaaaaggccttcaccacCatttcaacacatttaactgt					novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OR2L13-70	NM_175911	exon3	c.C717G	p.T239T	CACCACCATTTCA	.	157	38	95	0	.	0	0	0	0	0	G	248263394	C	G	248263394	2	3	31	1	0	0	0	0	0	0	0	1	11035	581	21	3		3	OR2L13	1	248263394	Silent	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	4	248263394	987227	305	5679	52	2								
OR2M5	127059	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	248308676	248308676	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ggacctcatgctcatctgctCtaccgtacccaagatggcct	8	15	4	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OR2M5-71	NM_001004690	exon1	c.C227A	p.S76Y	TCTGCTCTACCGT	.	463	57	285	0	.	0	0	0	0	0	A	248308676	C	A	248308676	3	1	31	1	0	0	0	0	1	0	0	0	11042	913	32	3	229	3	OR2M5	1	248308676	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	45282	248308676	941945	306	5680										
OR2M2	391194	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	248343672	248343672	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gctatattgctatttgccacCctctaagatataccaatctc	4	12	2	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OR2M2-72	NM_001004688	exon1	c.C385G	p.P129A	TGCCACCCTCTAA	.	233	46	174	1	.	0	0	0	0	0	G	248343672	C	G	248343672	3	3	31	1	0	0	0	0	1	0	0	0	11039	623	22	3	387	3	OR2M2	1	248343672	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	34996	248343672	906949	307	5681										
OR2M3	127062	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	248366445	248366445	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	atcacagccccacccacaccTtcctcttctttctggtcctg	4	19	4	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OR2M3-70	NM_001004689	exon1	c.T76A	p.F26I	CACACCTTCCTCT	.	615	160	362	1	.	0	0	0	0	0	A	248366445	T	A	248366445	3	1	31	1	0	0	0	0	1	0	0	0	11040	1609	56	5	78	5	OR2M3	1	248366445	Missense_Mutation	SNP	T	TCGA-OR-A5KB-01A-11D-A30A-10	22773	248366445	884176	308	5682										
OR2M3	127062	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	248366542	248366542	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ggacacccagctccacacccCcatgtacctcctcctcagcc	5	22	1	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OR2M3-70	NM_001004689	exon1	c.C173G	p.P58R	ACACCCCCATGTA	.	494	146	296	1	.	0	0	0	0	0	G	248366542	C	G	248366542	3	3	31	1	0	0	0	0	1	0	0	0	11040	623	22	3	175	3	OR2M3	1	248366542	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	97	248366542	884079	309	5683										
OR2M4	26245	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	248402254	248402254	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gtgtgggaaaaccagaccttCaactccatcttcatcctgct	7	13	3	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OR2M4-113	NM_017504	exon1	c.C24T	p.F8F	GACCTTCAACTCC	.	305	153	167	0	.	0	0	0	0	0	T	248402254	C	T	248402254	2	4	31	1	0	0	0	0	0	0	0	1	11041	825	29	3		3	OR2M4	1	248402254	Silent	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	35712	248402254	848367	310	5684										
OR2T12	127064	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr1	248458292	248458292	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	taacacacagcagatgtacaTggcgttttcgaagactgaag	10	8	0	3	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OR2T12-71	NM_001004692	exon1	c.A589T	p.M197L	TGTACATGGCGTT	.	1588	190	807	0	.	0	0	0	0	0	A	248458292	T	A	248458292	3	1	31	1	0	0	0	0	1	0	0	0	11048	1464	51	5	376	5	OR2T12	1	248458292	Missense_Mutation	SNP	T	TCGA-OR-A5KB-01A-11D-A30A-10	56038	248458292	792329	311	5685										
OR14C36	127066	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	248512583	248512583	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cagctgcccttctgtcggtcCaacgttattcatcaattctt	6	13	4	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OR14C36-48	NM_001001918	exon1	c.C507A	p.S169S	TCGGTCCAACGTT	.	119	57	85	0	.	0	0	0	0	0	A	248512583	C	A	248512583	2	1	31	1	0	0	0	0	0	0	0	1	10975	581	21	3		3	OR14C36	1	248512583	Silent	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	54291	248512583	738038	312	5686										
OR2T4	127074	ucsc.edu;bcgsc.ca	37	chr1	248525752	248525752	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tatggggctgccatctacacCtacatgctccccagctccta	7	16	1	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OR2T4-68	NM_001004696	exon1	c.C870A	p.T290T	CTACACCTACATG	.	1467	580	914	3	.	0	0	0	0	0	A	248525752	C	A	248525752	2	1	31	1	0	0	0	0	0	0	0	1	11056	668	24	3		3	OR2T4	1	248525752	Silent	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	13169	248525752	724869	313	5687										
OR2T6	254879	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	248551108	248551108	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	acttcctcctcagccacctcTccgtcattgacacattatac	3	17	3	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OR2T6-71	NM_001005471	exon1	c.T199A	p.S67T	CACCTCTCCGTCA	.	345	186	219	0	.	0	0	0	0	0	A	248551108	T	A	248551108	3	1	31	1	0	0	0	0	1	0	0	0	11058	1551	54	5	201	5	OR2T6	1	248551108	Missense_Mutation	SNP	T	TCGA-OR-A5KB-01A-11D-A30A-10	25356	248551108	699513	314	5688										
OR2T6	254879	ucsc.edu;bcgsc.ca	37	chr1	248551631	248551631	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gaagaaggcctttgccacctGctcttcacacatgatggtgg	11	11	2	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OR2T6-71	NM_001005471	exon1	c.G722T	p.C241F	CCACCTGCTCTTC	.	324	81	207	2	.	0	0	0	0	0	T	248551631	G	T	248551631	3	4	31	1	0	0	0	0	1	0	0	0	11058	1319	46	3	724	3	OR2T6	1	248551631	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	523	248551631	698990	315	5689										
OR2T1	26696	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	248569879	248569879	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ccgggtctgttggatgattaTagcaggttcctggtttgggg	16	6	1	1	rs138350213	byfrequency	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OR2T1-69	NM_030904	exon1	c.T584C	p.I195T	TGATTATAGCAGG	.	248	107	139	0	T|0.999;C|0.001	0	0	0	0	0	C	248569879	T	C	248569879	3	2	31	1	0	0	0	0	1	0	0	0	11045	1406	49	4	586	4	OR2T1	1	248569879	Missense_Mutation	SNP	T	TCGA-OR-A5KB-01A-11D-A30A-10	18248	248569879	680742	316	5690										
OR2T2	401992	broad.mit.edu;bcgsc.ca	37	chr1	248616364	248616364	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gctccaggacctcctgtccaAggacaagaccatttccttcc	7	16	0	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OR2T2-23	NM_001004136	exon1	c.A266T	p.K89M	TGTCCAAGGACAA	.	2474	164	1715	2	.	0	0	0	0	0	T	248616364	A	T	248616364	3	4	31	1	0	0	0	0	1	0	0	0	11049	72	3	5	268	5	OR2T2	1	248616364	Missense_Mutation	SNP	A	TCGA-OR-A5KB-01A-11D-A30A-10	46485	248616364	634257	317	5691										
OR2T10	127069	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	248756309	248756309	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gcatgtagttgtaaatagcaGctccatagaagaggctgacc	11	8	0	3	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OR2T10-69	NM_001004693	exon1	c.C761T	p.A254V	ATAGCAGCTCCAT	.	256	39	202	0	.	0	0	0	0	0	A	248756309	G	A	248756309	3	1	31	1	0	0	0	0	1	0	0	0	11046	971	34	3	180	3	OR2T10	1	248756309	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	139945	248756309	494312	318	5692			2	31	96426598	4	4	570	G		1.382265e-05
OR2T10	127069	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	248756494	248756494	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	atgaaaatcttgtaaagtgaGgtgtctgagcaagagagctt	12	4	2	4	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OR2T10-69	NM_001004693	exon1	c.C576A	p.T192T	AAGTGAGGTGTCT	.	392	246	343	1	.	0	0	0	0	0	T	248756494	G	T	248756494	2	4	31	1	0	0	0	0	0	0	0	1	11046	987	35	3		3	OR2T10	1	248756494	Silent	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	185	248756494	494127	319	5693			2	31	96426598	4	4	570	G		1.382265e-05
OR2T10	127069	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	248756527	248756527	+	Silent	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gagagcttcaaaacagcaggGacctcacagaagaagtgctg	12	9	2	3	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OR2T10-69	NM_001004693	exon1	c.C543A	p.V181V	AGCAGGGACCTCA	.	441	74	375	0	.	0	0	0	0	0	T	248756527	G	T	248756527	2	4	31	1	0	0	0	0	0	0	0	1	11046	1161	41	3		3	OR2T10	1	248756527	Silent	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	33	248756527	494094	320	5694			2	31	96426598	4	4	570	G		1.382265e-05
OR2T10	127069	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	248756878	248756878	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	aagtctatgagtgagagctgGtttataaagaagtacatggg	13	3	1	3	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OR2T10-69	NM_001004693	exon1	c.C192A	p.N64K	GAGCTGGTTTATA	.	281	153	266	1	.	0	0	0	0	0	T	248756878	G	T	248756878	3	4	31	1	0	0	0	0	1	0	0	0	11046	1252	44	3	749	3	OR2T10	1	248756878	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	351	248756878	493743	321	5695			2	31	96426598	4	4	570	G		1.382265e-05
OR2T11	127077	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	248790268	248790268	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ctgagcagaaagtacatgggGgtgtggaggcgagagtccac	17	7	0	3	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OR2T11-69	NM_001001964	exon1	c.C162A	p.T54T	CATGGGGGTGTGG	.	240	115	158	1	.	0	0	0	0	0	T	248790268	G	T	248790268	2	4	31	1	0	0	0	0	0	0	0	1	11047	1219	43	3		3	OR2T11	1	248790268	Silent	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	33390	248790268	460353	322	5696										
OR2T11	127077	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	248790331	248790331	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	aaatttgcagtcacggccccCaagaaaacagcaaggatcac	8	12	2	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OR2T11-69	NM_001001964	exon1	c.G99T	p.L33F	GGCCCCCAAGAAA	.	196	27	135	0	.	0	0	0	0	0	A	248790331	C	A	248790331	3	1	31	1	0	0	0	0	1	0	0	0	11047	593	21	3	855	3	OR2T11	1	248790331	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	63	248790331	460290	323	5697										
SNTG2	54221	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	1094065	1094065	+	Silent	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tctgagcacaacgtccctgtCgtcatatcaaaaatattcga	6	11	3	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SNTG2-136	NM_018968	exon4	c.C294G	p.V98V	CCCTGTCGTCATA	.	120	44	149	0	.	0	0	0	0	0	G	1094065	C	G	1094065	2	3	31	1	0	0	0	0	0	0	0	1	14910	871	31	2		2	SNTG2	2	1094065	Silent	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10		1094065	242105308	324	5698										
TPO	7173	hgsc.bcm.edu	37	chr2	1481231	1481231	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ggccggagacggccgcgccaGcgaggtcccctccctgacgg	16	17	0	2	rs2175977	byfrequency	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TPO-332	NM_175719	exon8	c.G1193C	p.S398T	GCGCCAGCGAGGT	.	11	9	0	0	G|0.301;C|0.699	0	0	0	0	0	C	1481231	G	C	1481231	3	2	31	1	0	0	0	0	1	0	0	0	16448	971	34	3	1219	3	TPO	2	1481231	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	387166	1481231	241718142	325	5699										
MYT1L	23040	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	1926733	1926733	+	Missense_Mutation	SNP	G	G	T													0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gagcacaacaccgtgtccttGggctaatagtttaagggagt					novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MYT1L-95	NM_015025	exon10	c.C808A	p.Q270K	GTCCTTGGGCTAA	.	237	92	280	1	.	0	0	0	0	0	T	1926733	G	T	1926733	3	4	31	1	0	0	0	0	1	0	0	0	10135	1357	47	3	2810	3	MYT1L	2	1926733	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	445502	1926733	241272640	326	5700	53	2								
MYT1L	23040	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	1926734	1926734	+	Silent	SNP	G	G	T													0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	agcacaacaccgtgtccttgGgctaatagtttaagggagtc					novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MYT1L-95	NM_015025	exon10	c.C807A	p.A269A	TCCTTGGGCTAAT	.	239	91	280	2	.	0	0	0	0	0	T	1926734	G	T	1926734	2	4	31	1	0	0	0	0	0	0	0	1	10135	1219	43	3		3	MYT1L	2	1926734	Silent	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	1	1926734	241272639	327	5701	53	2								
TSSC1	7260	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	3197900	3197900	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	attaaagtcaaggtcccgcaCcagctgtccgtgggcattct	10	12	2	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TSSC1-90	NM_003310	exon7	c.G691A	p.V231M	CCCGCACCAGCTG	.	82	27	77	0	.	0	0	0	0	0	T	3197900	C	T	3197900	3	4	31	1	0	0	0	0	1	0	0	0	16704	507	18	3	484	3	TSSC1	2	3197900	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	1271166	3197900	240001473	328	5702										
SOX11	6664	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	5834070	5834070	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ggattcgttcagcgagggcaGcctgggctcccacttcgagt	14	12	1	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SOX11-514	NM_003108	exon1	c.G1217T	p.S406I	AGGGCAGCCTGGG	.	200	45	156	0	.	0	0	0	0	0	T	5834070	G	T	5834070	3	4	31	1	0	0	0	0	1	0	0	0	14977	971	34	3	1219	3	SOX11	2	5834070	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	2636170	5834070	237365303	329	5703										
CMPK2	129607	hgsc.bcm.edu	37	chr2	7005369	7005369	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tgcgggcgtggtgcctcctgAcaggcgcccagcagctcgag	16	14	0	1	rs11678810		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CMPK2-68	NM_001256478	exon1	c.T459C	p.C153C	CTCCTGACAGGCG	.	5	5	0	0	A|0.003;G|0.997	0	0	0	0	0	G	7005369	A	G	7005369	2	3	31	1	0	0	0	0	0	0	0	1	3587	273	10	4		4	CMPK2	2	7005369	Silent	SNP	A	TCGA-OR-A5KB-01A-11D-A30A-10	1171299	7005369	236194004	330	5704										
FAM84A	151354	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr2	14774305	14774305	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gcaccccctgcccggagagcCccagccgccaccaccaccac	8	24	0	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FAM84A-91	NM_145175	exon2	c.C202A	p.P68T	GAGAGCCCCAGCC	.	73	29	86	0	.	0	0	0	0	0	A	14774305	C	A	14774305	3	1	31	1	0	0	0	0	1	0	0	0	5660	623	22	3	204	3	FAM84A	2	14774305	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	7768936	14774305	228425068	331	5705										
NBAS	51594	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	15372587	15372587	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	actgctgcaacaacaccttcCaggaccttcagtgggtccct	8	15	1	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	NBAS-94	NM_015909	exon47	c.G6195T	p.L2065L	ACCTTCCAGGACC	.	96	33	85	0	.	0	0	0	0	0	A	15372587	C	A	15372587	2	1	31	1	0	0	0	0	0	0	0	1	10214	581	21	3		3	NBAS	2	15372587	Silent	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	598282	15372587	227826786	332	5706										
FAM49A	81553	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr2	16743378	16743378	+	Frame_Shift_Del	DEL	C	C	-													0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ggtgtgtagggtggacaagtCagagattccaataaactctg					novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FAM49A-226	NM_030797	exon6	c.330delG	p.L110fs	ACAAGTCAGAGAT	.	122	41	113	0	.	0	0	0	0	0	-	16743378	C	-	16743378	7	5	31	1	0	1	0	1	0	0	0	0	5594	813	29	0	669	0	FAM49A	2	16743378	Frame_Shift_Del	DEL	C	TCGA-OR-A5KB-01A-11D-A30A-10	1370791	16743378	226455995	333	5707										
APOB	338	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	21228418	21228418	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	agggcaaatgatgaagttctCagcttcttatagatttgtat	9	5	2	3	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	APOB-175	NM_000384	exon26	c.G11322T	p.L3774L	AGTTCTCAGCTTC	.	80	19	81	0	.	0	0	0	0	0	A	21228418	C	A	21228418	2	1	31	1	0	0	0	0	0	0	0	1	785	813	29	3		3	APOB	2	21228418	Silent	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	4485040	21228418	221970955	334	5708										
ATAD2B	54454	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	24110821	24110821	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	caagaaaggtccccatctccCttcttttcccctcgaagggg	8	15	2	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ATAD2B-68	NM_001242338	exon4	c.G453C	p.K151N	ATCTCCCTTCTTT	.	130	24	152	0	.	0	0	0	0	0	G	24110821	C	G	24110821	3	3	31	1	0	0	0	0	1	0	0	0	1073	680	24	3	4023	3	ATAD2B	2	24110821	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	2882403	24110821	219088552	335	5709										
OTOF	9381	bcgsc.ca	37	chr2	26696889	26696889	+	Silent	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tacttgctgagcacgggccgGatgcccatgggcacgggcat	15	12	0	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OTOF-135	NM_194248	exon27	c.C3378A	p.I1126I	GGGCCGGATGCCC	.	366	162	329	4	.	0	0	0	0	0	T	26696889	G	T	26696889	2	4	31	1	0	0	0	0	0	0	0	1	11332	1164	41	3		3	OTOF	2	26696889	Silent	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	2586068	26696889	216502484	336	5710										
SLC30A3	7781	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	27479291	27479291	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gaggcaacatggtaagtgagCgtaagggcccacaggtgcag	16	8	0	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SLC30A3-90	NM_003459	exon7	c.G981A	p.T327T	AGTGAGCGTAAGG	.	358	68	308	0	.	0	0	0	0	0	T	27479291	C	T	27479291	2	4	31	1	0	0	0	0	0	0	0	1	14591	755	27	1		1	SLC30A3	2	27479291	Silent	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	782402	27479291	215720082	337	5711										
ALK	238	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	29497978	29497978	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cccttacctgtagggtcaaaGatgggggtctgtcttggtga	14	8	3	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ALK-3833	NM_004304	exon11	c.C2028A	p.I676I	GTCAAAGATGGGG	.	113	39	155	0	.	0	0	0	0	0	T	29497978	G	T	29497978	2	4	31	1	0	0	0	0	0	0	0	1	525	932	33	3		3	ALK	2	29497978	Silent	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	2018687	29497978	213701395	338	5712										
ALK	238	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr2	29754793	29754793	+	Frame_Shift_Del	DEL	G	G	-													0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gtacttacccatgcttccctGgagtgggcatcaggaggatc					novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ALK-3833	NM_004304	exon4	c.1142delC	p.P381fs	TTCCCTGGAGTGG	.	88	37	83	0	.	0	0	0	0	0	-	29754793	G	-	29754793	7	5	31	1	0	1	0	1	0	0	0	0	525	1348	47	0	3824	0	ALK	2	29754793	Frame_Shift_Del	DEL	G	TCGA-OR-A5KB-01A-11D-A30A-10	256815	29754793	213444580	339	5713										
ALK	238	hgsc.bcm.edu	37	chr2	30143451	30143451	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ggggagcccgcgcgctggccGgtccccatcccggagcccac	15	19	0	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ALK-3833	NM_004304	exon1	c.C75A	p.T25T	CTGGCCGGTCCCC	.	14	9	2	0	.	0	0	0	0	0	T	30143451	G	T	30143451	2	4	31	1	0	0	0	0	0	0	0	1	525	1103	39	2		2	ALK	2	30143451	Silent	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	388658	30143451	213055922	340	5714										
XDH	7498	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	31610680	31610680	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cctgaggcatcacctaccagCaactctgggggaaaaatggg	12	11	2	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	XDH-158	NM_000379	exon8	c.G648T	p.L216F	TACCAGCAACTCT	.	58	13	63	0	.	0	0	0	0	0	A	31610680	C	A	31610680	3	1	31	1	0	0	0	0	1	0	0	0	17464	709	25	3	3469	3	XDH	2	31610680	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	1467229	31610680	211588693	341	5715										
NLRC4	58484	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	32477523	32477523	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cctgaaatagaggatagttcCactccttaagggatttaaga	9	7	0	3	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	NLRC4-276	NM_001199138	exon3	c.G227A	p.W76X	TAGTTCCACTCCT	.	89	40	88	0	.	0	0	0	0	0	T	32477523	C	T	32477523	4	4	31	1	0	0	0	0	0	1	0	0	10498	595	21	3	2875	3	NLRC4	2	32477523	Nonsense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	866843	32477523	210721850	342	5716										
BIRC6	57448	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	32673862	32673862	+	Splice_Site	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gtgcattattttatttttcaGatatggattatatagctcac	6	5	2	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	BIRC6-233	NM_016252	exon22	c.4485-1G>T	.	TTTTCAGATATGG	.	34	13	51	0	.	0	0	0	0	0	T	32673862	G	T	32673862	5	4	31	1	0	0	0	0	0	0	1	0	1439	956	33	3	4570	3	BIRC6	2	32673862	Splice_Site	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	196339	32673862	210525511	343	5717										
TTC27	55622	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	32865410	32865410	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	aatctacagcctgacctcgaAgcctatactactgttattag	6	11	1	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TTC27-90	NM_017735	exon4	c.A470C	p.K157T	CCTCGAAGCCTAT	.	71	20	76	0	.	0	0	0	0	0	C	32865410	A	C	32865410	3	2	31	1	0	0	0	0	1	0	0	0	16733	72	3	5	484	5	TTC27	2	32865410	Missense_Mutation	SNP	A	TCGA-OR-A5KB-01A-11D-A30A-10	191548	32865410	210333963	344	5718										
RASGRP3	25780	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	33752422	33752422	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	accctgagtgaactagtctcCctgcagaatgcctctcacca	7	15	2	3	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	RASGRP3-661	NM_170672	exon11	c.C1026T	p.S342S	AGTCTCCCTGCAG	.	137	62	136	0	.	0	0	0	0	0	T	33752422	C	T	33752422	2	4	31	1	0	0	0	0	0	0	0	1	13111	610	22	3		3	RASGRP3	2	33752422	Silent	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	887012	33752422	209446951	345	5719										
FAM98A	25940	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	33810384	33810384	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	aatgttcatagccacctctcCctcctcctcggcctcctgtt	5	18	2	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FAM98A-91	NM_015475	exon8	c.G1016T	p.G339V	CCTCTCCCTCCTC	.	124	47	145	1	.	0	0	0	0	0	A	33810384	C	A	33810384	3	1	31	1	0	0	0	0	1	0	0	0	5675	623	22	3	544	3	FAM98A	2	33810384	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	57962	33810384	209388989	346	5720										
QPCT	25797	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	37599541	37599541	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tttgctcaaggatcactcttTggaggggcggtatttccaga	12	8	3	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	QPCT-90	NM_012413	exon6	c.T866C	p.L289S	ACTCTTTGGAGGG	.	189	76	198	0	.	0	0	0	0	0	C	37599541	T	C	37599541	3	2	31	1	0	0	0	0	1	0	0	0	12909	1821	63	4	888	4	QPCT	2	37599541	Missense_Mutation	SNP	T	TCGA-OR-A5KB-01A-11D-A30A-10	3789157	37599541	205599832	347	5721										
SLC8A1	6546	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	40656207	40656207	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	caaagaagatcttactaacaGggtcattttcagtcacttca	6	9	5	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SLC8A1-93	NM_001252624	exon1	c.C1214G	p.P405R	CTAACAGGGTCAT	.	175	41	189	0	.	0	0	0	0	0	C	40656207	G	C	40656207	3	2	31	1	0	0	0	0	1	0	0	0	14741	1000	35	3	1855	3	SLC8A1	2	40656207	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	3056666	40656207	202543166	348	5722										
COX7A2L	9167	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	42578413	42578413	+	Silent	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gcgatcaggcagtagatggtCcctcccacagtcagcgccat	11	14	2	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	COX7A2L-226	NM_004718	exon3	c.G291T	p.G97G	GATGGTCCCTCCC	.	309	62	299	0	.	0	0	0	0	0	A	42578413	C	A	42578413	2	1	31	1	0	0	0	0	0	0	0	1	3787	842	30	3		3	COX7A2L	2	42578413	Silent	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	1922206	42578413	200620960	349	5723										
STON1-GTF2A1L	286749	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	48872174	48872174	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	taaatttcttatatctagggCacttcaaactccagtgcaaa	5	9	3	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	STON1-GTF2A1L-27	NM_001198593	exon7	c.C2418A	p.G806G	CTAGGGCACTTCA	.	33	8	53	0	.	0	0	0	0	0	A	48872174	C	A	48872174	2	1	31	1	0	0	0	0	0	0	0	1	15354	697	25	3		3	STON1-GTF2A1L	2	48872174	Silent	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	6293761	48872174	194327199	350	5724										
NRXN1	9378	broad.mit.edu;mdanderson.org	37	chr2	50574004	50574004	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	caaagcagggccaggcgcccCcctgcgccgccgccgccgcc	13	22	0	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	NRXN1-92	NM_138735	exon1	c.G84A	p.G28G	GCGCCCCCCTGCG	.	34	10	31	0	.	0	0	0	0	0	T	50574004	C	T	50574004	2	4	31	1	0	0	0	0	0	0	0	1	10694	610	22	3		3	NRXN1	2	50574004	Silent	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	1701830	50574004	192625369	351	5725										
GPR75	10936	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	54080954	54080954	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cacggctttggaatccttggCagtggagaggttgatggctg	16	7	0	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GPR75-92	NM_006794	exon2	c.G940T	p.A314S	CCTTGGCAGTGGA	.	177	63	182	0	.	0	0	0	0	0	A	54080954	C	A	54080954	3	1	31	1	0	0	0	0	1	0	0	0	6728	710	25	3	686	3	GPR75	2	54080954	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	3506950	54080954	189118419	352	5726										
MEIS1	4211	broad.mit.edu	37	chr2	66667049	66667050	+	Missense_Mutation	DNP	GG	GG	TT													0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ttgtaccccccgcgagccggGggtggcgggcggggacgtct					novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	GG	GG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MEIS1-226	NM_002398	exon3	c.G315T	p.G105V	GCCGGGGGTGGCG	.	47	1	54	0	.	0	0	0	0	0	TT	66667050	GG	TT	66667049	3	4	31	1	0	0	0	0	1	0	0	0	9495	1232	43	3	324	3	MEIS1	2	66667049	Missense_Mutation	DNP	GG	TCGA-OR-A5KB-01A-11D-A30A-10	12586095	66667049	176532324	353	5727										
APLF	200558	broad.mit.edu;bcgsc.ca	37	chr2	68805010	68805010	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	caacccaatgagtatgacctGaacgacagctttctagatga	8	10	1	5	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	APLF-92	NM_173545	exon10	c.G1392T	p.L464L	TGACCTGAACGAC	.	117	48	114	1	.	0	0	0	0	0	T	68805010	G	T	68805010	2	4	31	1	0	0	0	0	0	0	0	1	776	1277	45	3		3	APLF	2	68805010	Silent	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	2137961	68805010	174394363	354	5728										
BMP10	27302	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	69092925	69092925	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	aggtggaccaaggcctggatAattgcatgctttgtgggtgt	15	6	0	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	BMP10-92	NM_014482	exon2	c.T1113C	p.I371I	CTGGATAATTGCA	.	172	84	206	2	.	0	0	0	0	0	G	69092925	A	G	69092925	2	3	31	1	0	0	0	0	0	0	0	1	1458	358	13	4		4	BMP10	2	69092925	Silent	SNP	A	TCGA-OR-A5KB-01A-11D-A30A-10	287915	69092925	174106448	355	5729										
ASPRV1	151516	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	70188807	70188807	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ttttgatgcctaggctggccCctgggctccccattctcctt	9	15	1	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ASPRV1-69	NM_152792	exon1	c.G14T	p.G5V	CTGGCCCCTGGGC	.	66	13	59	0	.	0	0	0	0	0	A	70188807	C	A	70188807	3	1	31	1	0	0	0	0	1	0	0	0	1059	623	22	3	1021	3	ASPRV1	2	70188807	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	1095882	70188807	173010566	356	5730										
ZNF638	27332	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	71629179	71629179	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	acttagcaaaaccatttggtGgtttaaaggatatcttgatt	8	5	1	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ZNF638-94	NM_014497	exon16	c.G2791T	p.G931C	TTTGGTGGTTTAA	.	112	20	117	0	.	0	0	0	0	0	T	71629179	G	T	71629179	3	4	31	1	0	0	0	0	1	0	0	0	18092	1348	47	3	2849	3	ZNF638	2	71629179	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	1440372	71629179	171570194	357	5731										
DYSF	8291	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	71709010	71709010	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ttttctctttttcttccaggGatttgaatgggacctcaagg	9	8	3	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DYSF-158	NM_001130984	exon3	c.G149C	p.G50A	TCCAGGGATTTGA	.	46	13	38	0	.	0	0	0	0	0	C	71709010	G	C	71709010	3	2	31	1	0	0	0	0	1	0	0	0	4870	1188	41	3	251	3	DYSF	2	71709010	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	79831	71709010	171490363	358	5732										
SPR	6697	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	73115545	73115545	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ctccatgctctgcctgacttCcagcgtcctgaaggccttcc	8	17	1	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SPR-92	NM_003124	exon2	c.C407T	p.S136F	TGACTTCCAGCGT	.	230	54	244	1	.	0	0	0	0	0	T	73115545	C	T	73115545	3	4	31	1	0	0	0	0	1	0	0	0	15128	855	30	3	413	3	SPR	2	73115545	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	1406535	73115545	170083828	359	5733										
EMX1	2016	broad.mit.edu	37	chr2	73151565	73151565	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gccttcgagaagaaccactaCgtggtgggcgccgagcggaa	15	11	0	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	EMX1-90	NM_004097	exon2	c.C648T	p.Y216Y	CCACTACGTGGTG	.	105	4	23	0	.	0	0	0	0	0	T	73151565	C	T	73151565	2	4	31	1	0	0	0	0	0	0	0	1	5120	547	19	1		1	EMX1	2	73151565	Silent	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	36020	73151565	170047808	360	5734										
EGR4	1961	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr2	73519448	73519448	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cgcgtagggacccttgaaggCagagacagcgtccagcgctg	15	12	0	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	EGR4-90	NM_001965	exon2	c.G907C	p.A303P	TGAAGGCAGAGAC	.	96	12	52	0	.	0	0	0	0	0	G	73519448	C	G	73519448	3	3	31	1	0	0	0	0	1	0	0	0	4985	710	25	3	866	3	EGR4	2	73519448	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	367883	73519448	169679925	361	5735										
ALMS1	7840	broad.mit.edu;bcgsc.ca	37	chr2	73679621	73679621	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ggactgtctagttcctactcAcattcacataaagagaaact	6	10	3	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ALMS1-142	NM_015120	exon8	c.A5964T	p.S1988S	CTACTCACATTCA	.	103	45	111	2	.	0	0	0	0	0	T	73679621	A	T	73679621	2	4	31	1	0	0	0	0	0	0	0	1	535	146	6	5		5	ALMS1	2	73679621	Silent	SNP	A	TCGA-OR-A5KB-01A-11D-A30A-10	160173	73679621	169519752	362	5736										
ALMS1	7840	hgsc.bcm.edu;broad.mit.edu	37	chr2	73717464	73717464	+	Frame_Shift_Del	DEL	G	G	-													0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tattttagcagaaggtagaaGgcaaagccaaaaattacctg					novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ALMS1-142	NM_015120	exon10	c.8375delG	p.R2792fs	GTAGAAGGCAAAG	.	29	10	21	0	.	0	0	0	0	0	-	73717464	G	-	73717464	7	5	31	1	0	1	0	1	0	0	0	0	535	1000	35	0	8413	0	ALMS1	2	73717464	Frame_Shift_Del	DEL	G	TCGA-OR-A5KB-01A-11D-A30A-10	37843	73717464	169481909	363	5737										
TLX2	3196	hgsc.bcm.edu;bcgsc.ca	37	chr2	74742065	74742065	+	Frame_Shift_Del	DEL	T	T	-													0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ggtcgcgggggccagggtcaTggggagaatggggcgttctc					novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TLX2-90	NM_016170	exon1	c.132delT	p.H44fs	GGGTCATGGGGAG	.	169	44	125	1	.	0	0	0	0	0	-	74742065	T	-	74742065	7	5	31	1	0	1	0	1	0	0	0	0	15998	1461	51	0	134	0	TLX2	2	74742065	Frame_Shift_Del	DEL	T	TCGA-OR-A5KB-01A-11D-A30A-10	1024601	74742065	168457308	364	5738										
DQX1	165545	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	74746335	74746335	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ttaggagaaggtaatttccaGtcccgtctgtgtctctggcc	11	10	2	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DQX1-92	NM_133637	exon11	c.C1829T	p.T610I	TTTCCAGTCCCGT	.	148	73	145	1	.	0	0	0	0	0	A	74746335	G	A	74746335	3	1	31	1	0	0	0	0	1	0	0	0	4762	1029	36	3	332	3	DQX1	2	74746335	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	4270	74746335	168453038	365	5739										
AUP1	550	bcgsc.ca	37	chr2	74756548	74756548	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	aagacgtggatcccgagaaaGaggcgcaggacgaggaggca	17	8	0	3	rs1183739	byfrequency	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	AUP1-90	NM_181575	exon2	c.C129G	p.L43L	GAGAAAGAGGCGC	.	370	9	316	2	G|0.284;C|0.716	0	0	0	0	0	C	74756548	G	C	74756548	2	2	31	1	0	0	0	0	0	0	0	1	1221	929	33	3		3	AUP1	2	74756548	Silent	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	10213	74756548	168442825	366	5740										
LOXL3	84695	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	74761338	74761339	+	Missense_Mutation	DNP	GG	GG	TT													0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	atgccttgctctccaaagttGgcacactcataccgcttgga					novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	GG	GG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	LOXL3-226	NM_032603	exon12	c.C1964A	p.A655E	AAGTTGGCACACT	.	190	2	204	0	.	0	0	0	0	0	TT	74761339	GG	TT	74761338	3	4	31	1	0	0	0	0	1	0	0	0	8928	1335	47	3	308	3	LOXL3	2	74761338	Missense_Mutation	DNP	GG	TCGA-OR-A5KB-01A-11D-A30A-10	4790	74761338	168438035	367	5741										
TACR1	6869	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	75425974	75425974	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gcccaaaggacaatttgccaGgctggttgcacgaactgatt	11	10	0	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TACR1-523	NM_001058	exon1	c.C87G	p.A29A	TTGCCAGGCTGGT	.	302	89	322	0	.	0	0	0	0	0	C	75425974	G	C	75425974	2	2	31	1	0	0	0	0	0	0	0	1	15542	987	35	3		3	TACR1	2	75425974	Silent	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	664636	75425974	167773399	368	5742										
LRRTM4	80059	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	77745615	77745615	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cgccgcctcttcataagagaGtgttgctggagttgtttcat	11	9	3	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	LRRTM4-94	NM_024993	exon3	c.C1380A	p.H460Q	AAGAGAGTGTTGC	.	111	29	111	2	.	0	0	0	0	0	T	77745615	G	T	77745615	3	4	31	1	0	0	0	0	1	0	0	0	9069	1020	36	3	406	3	LRRTM4	2	77745615	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	2319641	77745615	165453758	369	5743										
LRRTM4	80059	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr2	77746839	77746839	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	atgttctcagggatatctgcGaaagcatgagactcacagta	10	8	3	1	rs76327576	byfrequency	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	LRRTM4-94	NM_024993	exon3	c.C156G	p.F52L	ATCTGCGAAAGCA	.	137	24	191	0	G|0.996;C|0.004	0	0	0	0	0	C	77746839	G	C	77746839	3	2	31	1	0	0	0	0	1	0	0	0	9069	1049	37	2	1630	2	LRRTM4	2	77746839	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	1224	77746839	165452534	370	5744										
REG3A	5068	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	79385466	79385466	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tggcacctgtgtggggtcatGgagcccaatccagacgtatg	14	10	1	1	rs11554092	alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	REG3A-91	NM_138938	exon3	c.C319G	p.H107D	GGTCATGGAGCCC	.	131	28	163	0	.	0	0	0	0	0	C	79385466	G	C	79385466	3	2	31	1	0	0	0	0	1	0	0	0	13247	1348	47	3	220	3	REG3A	2	79385466	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	1638627	79385466	163813907	371	5745										
CTNNA2	1496	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	79878752	79878752	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tggaaatccggacgctaacaGtggaaaggctgttggagcca	14	8	0	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CTNNA2-368	NM_001164883	exon2	c.G70T	p.V24L	CTAACAGTGGAAA	.	91	34	111	0	.	0	0	0	0	0	T	79878752	G	T	79878752	3	4	31	1	0	0	0	0	1	0	0	0	4019	1029	36	3	72	3	CTNNA2	2	79878752	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	493286	79878752	163320621	372	5746										
LRRTM1	347730	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	80530470	80530470	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cgtggtgagcttccgcagccCgtggaagaggtcgggcgcga	18	11	0	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	LRRTM1-73	NM_178839	exon2	c.G475T	p.G159W	GCAGCCCGTGGAA	.	110	51	99	1	.	0	0	0	0	0	A	80530470	C	A	80530470	3	1	31	1	0	0	0	0	1	0	0	0	9066	652	23	2	1097	2	LRRTM1	2	80530470	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	651718	80530470	162668903	373	5747										
RETSAT	54884	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	85577993	85577993	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	taggctttctctccactgtaCatggggtactcctttcggcc	9	13	1	0	rs201722519		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	RETSAT-70	NM_017750	exon3	c.G507A	p.M169I	ACTGTACATGGGG	.	167	69	222	1	C|0.999;T|0.001	0	0	0	0	0	T	85577993	C	T	85577993	3	4	31	1	0	0	0	0	1	0	0	0	13273	478	17	3	1361	3	RETSAT	2	85577993	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	5047523	85577993	157621380	374	5748										
CAPG	822	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	85625897	85625897	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tccttcagagcaggcttgggGcccaggacctgcaggggcca	15	13	1	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CAPG-204	NM_001256139	exon7	c.C675A	p.G225G	CTTGGGGCCCAGG	.	162	30	125	2	.	0	0	0	0	0	T	85625897	G	T	85625897	2	4	31	1	0	0	0	0	0	0	0	1	2627	1190	42	3		3	CAPG	2	85625897	Silent	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	47904	85625897	157573476	375	5749										
CD8A	925	hgsc.bcm.edu	37	chr2	87016799	87016799	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tggccggcacgcctctgggcGcagggacaggggctgcgacg	19	13	1	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CD8A-91	NM_001145873	exon6	c.C478A	p.R160S	CTGGGCGCAGGGA	.	7	4	0	0	.	0	0	0	0	0	T	87016799	G	T	87016799	3	4	31	1	0	0	0	0	1	0	0	0	3050	1087	38	2	245	2	CD8A	2	87016799	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	1390902	87016799	156182574	376	5750										
ADRA2B	151	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	96780750	96780750	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tgaagaagaaggggaaccagCagagcacaaaaacgccaatg	12	8	0	4	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ADRA2B-229	NM_000682	exon1	c.G1139T	p.C380F	AACCAGCAGAGCA	.	180	78	168	1	.	0	0	0	0	0	A	96780750	C	A	96780750	3	1	31	1	0	0	0	0	1	0	0	0	338	710	25	3	208	3	ADRA2B	2	96780750	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	9763951	96780750	146418623	377	5751										
STARD7	56910	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	96858161	96858161	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tgggattcatatgatctgacCctgacgaattctggagactc	10	9	3	4	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	STARD7-68	NM_020151	exon6	c.G789T	p.R263S	TCTGACCCTGACG	.	111	48	96	0	.	0	0	0	0	0	A	96858161	C	A	96858161	3	1	31	1	0	0	0	0	1	0	0	0	15299	622	22	3	335	3	STARD7	2	96858161	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	77411	96858161	146341212	378	5752										
INPP4A	3631	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	99181141	99181141	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ggcttcatcattaagctgagGaactgcctgcatgacgacgg	12	10	2	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	INPP4A-227	NM_001134224	exon20	c.G2082T	p.R694S	GCTGAGGAACTGC	.	143	30	158	0	.	0	0	0	0	0	T	99181141	G	T	99181141	3	4	31	1	0	0	0	0	1	0	0	0	7773	1165	41	3	2152	3	INPP4A	2	99181141	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	2322980	99181141	144018232	379	5753										
TBC1D8	11138	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr2	101670676	101670676	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cagcagcaggagtagtaggtGaccagcttctccgcctcggg	14	12	1	1	rs78556703	byfrequency	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TBC1D8-25	NM_001102426	exon4	c.C480T	p.V160V	GTAGGTGACCAGC	.	123	20	166	0	G|0.993;A|0.007	0	0	0	0	0	A	101670676	G	A	101670676	2	1	31	1	0	0	0	0	0	0	0	1	15662	1277	45	3		3	TBC1D8	2	101670676	Silent	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	2489535	101670676	141528697	380	5754										
SLC9A4	389015	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	103090435	103090435	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	atgtgcaaattccttatgagGtcactctctggatacttcta	7	9	3	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SLC9A4-92	NM_001011552	exon1	c.G217T	p.V73F	TATGAGGTCACTC	.	95	37	102	0	.	0	0	0	0	0	T	103090435	G	T	103090435	3	4	31	1	0	0	0	0	1	0	0	0	14751	1261	44	3	219	3	SLC9A4	2	103090435	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	1419759	103090435	140108938	381	5755										
RGPD3	653489	bcgsc.ca	37	chr2	107029644	107029644	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cactacctggcttcaagaaaAtgaactgcagcaagacgttc	8	11	1	3	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	RGPD3-23	NM_001144013	exon22	c.T5162A	p.I1721N	AAGAAAATGAACT	.	1002	221	983	7	.	0	0	0	0	0	T	107029644	A	T	107029644	3	4	31	1	0	0	0	0	1	0	0	0	13322	101	4	5	122	5	RGPD3	2	107029644	Missense_Mutation	SNP	A	TCGA-OR-A5KB-01A-11D-A30A-10	3939209	107029644	136169729	382	5756										
RGPD3	653489	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr2	107041065	107041065	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tgatccagagaggggcttcaGgttcattgtagtcgttatcc	12	8	2	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	RGPD3-23	NM_001144013	exon20	c.C3358T	p.L1120L	GCTTCAGGTTCAT	.	27	12	40	0	.	0	0	0	0	0	A	107041065	G	A	107041065	2	1	31	1	0	0	0	0	0	0	0	1	13322	991	35	3		3	RGPD3	2	107041065	Silent	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	11421	107041065	136158308	383	5757										
ST6GAL2	84620	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	107423334	107423334	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ctcgtggtagtggcacagctCcgtctgccgcacggatggga	15	12	1	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ST6GAL2-191	NM_032528	exon6	c.G1390T	p.E464X	ACAGCTCCGTCTG	.	157	68	196	0	.	0	0	0	0	0	A	107423334	C	A	107423334	4	1	31	1	0	0	0	0	0	1	0	0	15259	864	30	3	203	3	ST6GAL2	2	107423334	Nonsense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	382269	107423334	135776039	384	5758										
ST6GAL2	84620	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	107459875	107459875	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gtcgccgtcgtcgccctcctCcaacacgtggctccttctct	8	19	1	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ST6GAL2-191	NM_032528	exon2	c.G559T	p.E187X	CCTCCTCCAACAC	.	119	31	124	2	.	0	0	0	0	0	A	107459875	C	A	107459875	4	1	31	1	0	0	0	0	0	1	0	0	15259	864	30	3	1137	3	ST6GAL2	2	107459875	Nonsense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	36541	107459875	135739498	385	5759										
RANBP2	5903	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr2	109384075	109384075	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	attggtgatataaagattttAcagaattatgataataagca	7	2	0	4	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	RANBP2-675	NM_006267	exon20	c.A7080C	p.L2360F	GATTTTACAGAAT	.	217	72	213	0	.	0	0	0	0	0	C	109384075	A	C	109384075	3	2	31	1	0	0	0	0	1	0	0	0	13063	388	14	5	7158	5	RANBP2	2	109384075	Missense_Mutation	SNP	A	TCGA-OR-A5KB-01A-11D-A30A-10	1924200	109384075	133815298	386	5760										
DPP10	57628	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr2	116535388	116535388	+	Frame_Shift_Del	DEL	C	C	-													0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ttctgagcactgaatcttctCccagaggaaggcagctgtac					novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DPP10-142	NM_001178034	exon15	c.1351delC	p.P451fs	TCTTCTCCCAGAG	.	106	44	116	0	.	0	0	0	0	0	-	116535388	C	-	116535388	7	5	31	1	0	1	0	1	0	0	0	0	4738	855	30	0	1568	0	DPP10	2	116535388	Frame_Shift_Del	DEL	C	TCGA-OR-A5KB-01A-11D-A30A-10	7151313	116535388	126663985	387	5761										
CNTNAP5	129684	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	125192069	125192069	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ctttgttcccagaatcagatGttgctgactttgatggccga	10	9	1	4	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CNTNAP5-524	NM_130773	exon5	c.G538A	p.V180I	TCAGATGTTGCTG	.	71	28	93	0	.	0	0	0	0	0	A	125192069	G	A	125192069	3	1	31	1	0	0	0	0	1	0	0	0	3656	1377	48	3	556	3	CNTNAP5	2	125192069	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	8656681	125192069	118007304	388	5762										
CNTNAP5	129684	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	125284869	125284869	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ctctgtcccacagggtgcccCgacaatctcaccgattccca	7	18	2	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CNTNAP5-524	NM_130773	exon10	c.C1482A	p.P494P	GTGCCCCGACAAT	.	151	68	160	0	.	0	0	0	0	0	A	125284869	C	A	125284869	2	1	31	1	0	0	0	0	0	0	0	1	3656	639	23	2		2	CNTNAP5	2	125284869	Silent	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	92800	125284869	117914504	389	5763										
CNTNAP5	129684	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	125405388	125405388	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	atacagagctgacccgagtgCggggcgctaaccctgagaag	14	11	0	3	rs200795882	alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CNTNAP5-524	NM_130773	exon13	c.C1927A	p.R643R	CGAGTGCGGGGCG	.	370	161	422	1	.	0	0	0	0	0	A	125405388	C	A	125405388	2	1	31	1	0	0	0	0	0	0	0	1	3656	759	27	2		2	CNTNAP5	2	125405388	Silent	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	120519	125405388	117793985	390	5764										
MYO7B	4648	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	128367426	128367426	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tctgtcttgtttccccaggcCgccctggtcatatggaacgt	10	13	3	0	rs202235279	alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MYO7B-47	NM_001080527	exon24	c.C3027A	p.A1009A	CCAGGCCGCCCTG	.	163	36	173	0	C|0.999;T|0.000	0	0	0	0	0	A	128367426	C	A	128367426	2	1	31	1	0	0	0	0	0	0	0	1	10111	639	23	2		2	MYO7B	2	128367426	Silent	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	2962038	128367426	114831947	391	5765										
UGGT1	56886	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	128890799	128890799	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ttcgacccacctttcctggtGttattcggcagatcaggaaa	9	11	1	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	UGGT1-91	NM_020120	exon14	c.G1462C	p.V488L	CCTGGTGTTATTC	.	117	34	120	0	.	0	0	0	0	0	C	128890799	G	C	128890799	3	2	31	1	0	0	0	0	1	0	0	0	16979	1377	48	3	1516	3	UGGT1	2	128890799	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	523373	128890799	114308574	392	5766										
POTEF	728378	bcgsc.ca	37	chr2	130832803	130832803	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cacataggactctttctgatGcatgccccccatcatgccct	6	16	3	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	POTEF-27	NM_001099771	exon17	c.C2242T	p.H748Y	TCTGATGCATGCC	.	489	68	443	3	.	0	0	0	0	0	A	130832803	G	A	130832803	3	1	31	1	0	0	0	0	1	0	0	0	12294	1319	46	3	989	3	POTEF	2	130832803	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	1942004	130832803	112366570	393	5767										
CCDC74B	91409	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	130898790	130898790	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ctgttgtgaagtaggggctcCtcttccaggtccgccttctg	12	12	2	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CCDC74B-90	NM_207310	exon4	c.G624T	p.E208D	GGGCTCCTCTTCC	.	353	111	349	0	.	0	0	0	0	0	A	130898790	C	A	130898790	3	1	31	1	0	0	0	0	1	0	0	0	2854	680	24	3	538	3	CCDC74B	2	130898790	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	65987	130898790	112300583	394	5768										
SMPD4	55627	broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr2	130911967	130911967	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	accgctggtggccagggtgaCaggaagctcccagtgaatgt	15	10	0	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SMPD4-90	NM_017951	exon16	c.G1659T	p.L553L	GGGTGACAGGAAG	.	583	82	607	1	.	0	0	0	0	0	A	130911967	C	A	130911967	2	1	31	1	0	0	0	0	0	0	0	1	14842	465	17	3		3	SMPD4	2	130911967	Silent	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	13177	130911967	112287406	395	5769										
ARHGEF4	50649	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	131803668	131803668	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cccagccctgcccagcaaccGgccccagcagcaggtcctgg	11	20	0	0	rs138286451	byfrequency	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ARHGEF4-292	NM_015320	exon14	c.G1979A	p.R660Q	GCAACCGGCCCCA	.	188	87	63	0	G|0.999;A|0.001	0	0	0	0	0	A	131803668	G	A	131803668	3	1	31	1	0	0	0	0	1	0	0	0	908	1116	39	1	2117	1	ARHGEF4	2	131803668	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	891701	131803668	111395705	396	5770										
POTEE	445582	bcgsc.ca	37	chr2	132021613	132021613	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tggtgacggggtcacccacaCtgtgcccatctatgagggga	14	11	2	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_001083538	exon15	c.C2585A	p.T862N	CCCACACTGTGCC	.	425	162	424	2	.	0	0	0	0	0	A	132021613	C	A	132021613	3	1	31	1	0	0	0	0	1	0	0	0	12293	565	20	3	2643	3	POTEE	2	132021613	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	217945	132021613	111177760	397	5771										
GPR39	2863	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	133174919	133174919	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tctggaatcccctgaccacgTccagctacaccctgtcctgc	7	18	1	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GPR39-226	NM_001508	exon1	c.T304A	p.S102T	ACCACGTCCAGCT	.	161	73	180	0	.	0	0	0	0	0	A	133174919	T	A	133174919	3	1	31	1	0	0	0	0	1	0	0	0	6713	1667	58	5	306	5	GPR39	2	133174919	Missense_Mutation	SNP	T	TCGA-OR-A5KB-01A-11D-A30A-10	1153306	133174919	110024454	398	5772										
NCKAP5	344148	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	134275043	134275043	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	acttaccacaagactgctgtCtagagacagcctttttccaa	6	12	1	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_207481	exon3	c.G55C	p.D19H	TGCTGTCTAGAGA	.	71	13	75	0	.	0	0	0	0	0	G	134275043	C	G	134275043	3	3	31	1	0	0	0	0	1	0	0	0	10252	913	32	3	5746	3	NCKAP5	2	134275043	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	1100124	134275043	108924330	399	5773										
THSD7B	80731	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	137814534	137814534	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gagtcaagagcctgtgatgcTcccatttcctgtcctcttgg	10	12	2	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	THSD7B-75	.	.	.	.	TGATGCTCCCATT	.	134	23	186	0	.	0	0	0	0	0	A	137814534	T	A	137814534	2	1	31	1	0	0	0	0	0	0	0	1	15917	1538	54	5		5	THSD7B	2	137814534	Silent	SNP	T	TCGA-OR-A5KB-01A-11D-A30A-10	3539491	137814534	105384839	400	5774										
THSD7B	80731	broad.mit.edu;bcgsc.ca	37	chr2	138400132	138400132	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	catgccccacagagcttaccCaggagaaaacctgcccagtg	9	15	0	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	THSD7B-75	.	.	.	.	CTTACCCAGGAGA	.	77	7	91	0	.	0	0	0	0	0	A	138400132	C	A	138400132	3	1	31	1	0	0	0	0	1	0	0	0	15917	595	21	3	3864	3	THSD7B	2	138400132	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	585598	138400132	104799241	401	5775										
LRP1B	53353	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	141055390	141055390	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tacttacagtactgacatctGtctccggtgtattccggctg	9	11	2	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	LRP1B-311	NM_018557	exon84	c.C12954A	p.D4318E	ACATCTGTCTCCG	.	102	55	204	0	.	0	0	0	0	0	T	141055390	G	T	141055390	3	4	31	1	0	0	0	0	1	0	0	0	8982	1368	48	3	877	3	LRP1B	2	141055390	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	2655258	141055390	102143983	402	5776										
LRP1B	53353	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	141116494	141116494	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ttctgcatctgtgaggtctcGtggatggacaaagaaatttg	12	6	3	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	LRP1B-311	NM_018557	exon73	c.C11153A	p.T3718K	GGTCTCGTGGATG	.	45	17	83	0	.	0	0	0	0	0	T	141116494	G	T	141116494	3	4	31	1	0	0	0	0	1	0	0	0	8982	1145	40	2	2722	2	LRP1B	2	141116494	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	61104	141116494	102082879	403	5777										
LRP1B	53353	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	141128388	141128388	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ttgcaccgaaactgatcttcCttacattcagtcacacagtc	5	13	3	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	LRP1B-311	NM_018557	exon71	c.G10899A	p.K3633K	ATCTTCCTTACAT	.	83	33	83	1	.	0	0	0	0	0	T	141128388	C	T	141128388	2	4	31	1	0	0	0	0	0	0	0	1	8982	680	24	3		3	LRP1B	2	141128388	Silent	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	11894	141128388	102070985	404	5778										
LRP1B	53353	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	141245192	141245192	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	taatatttagttaccttaatGtcacttccatttaaacacat	2	8	1	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	LRP1B-311	NM_018557	exon58	c.C9237T	p.D3079D	CTTAATGTCACTT	.	54	15	50	0	.	0	0	0	0	0	A	141245192	G	A	141245192	2	1	31	1	0	0	0	0	0	0	0	1	8982	1368	48	3		3	LRP1B	2	141245192	Silent	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	116804	141245192	101954181	405	5779										
KIF5C	3800	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	149837965	149837965	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ccaaggatgaggtgaaagaaGttctccaggccctggaggag	15	8	1	3	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	KIF5C-69	NM_004522	exon14	c.G1459C	p.V487L	AAAGAAGTTCTCC	.	140	51	117	0	.	0	0	0	0	0	C	149837965	G	C	149837965	3	2	31	1	0	0	0	0	1	0	0	0	8328	1029	36	3	1435	3	KIF5C	2	149837965	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	8592773	149837965	93361408	406	5780										
RIF1	55183	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	152320981	152320981	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cctgatgatttaccaaatgtGtgtgaggaaaaaaatgaaac	9	5	0	4	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	RIF1-300	NM_018151	exon30	c.G4947T	p.V1649V	AAATGTGTGTGAG	.	78	21	107	0	.	0	0	0	0	0	T	152320981	G	T	152320981	2	4	31	1	0	0	0	0	0	0	0	1	13394	1364	48	3		3	RIF1	2	152320981	Silent	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	2483016	152320981	90878392	407	5781										
RIF1	55183	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	152321633	152321633	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	aaactgttggcccgtgtttaGgagactcgaaaaatgtttca	10	7	1	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	RIF1-300	NM_018151	exon30	c.G5599A	p.G1867R	TGTTTAGGAGACT	.	47	15	48	0	.	0	0	0	0	0	A	152321633	G	A	152321633	3	1	31	1	0	0	0	0	1	0	0	0	13394	1001	35	3	5713	3	RIF1	2	152321633	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	652	152321633	90877740	408	5782										
NEB	4703	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	152521284	152521284	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cctacttacatcactcatggTgatttggtttactctggaga	8	9	3	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	NEB-145	NM_004543	exon43	c.A5332G	p.T1778A	TCATGGTGATTTG	.	163	76	189	0	.	0	0	0	0	0	C	152521284	T	C	152521284	3	2	31	1	0	0	0	0	1	0	0	0	10331	1696	59	4	20914	4	NEB	2	152521284	Missense_Mutation	SNP	T	TCGA-OR-A5KB-01A-11D-A30A-10	199651	152521284	90678089	409	5783										
NEB	4703	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	152537258	152537258	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	acttacatcactcctctgggCctggttaattttagactgta	7	10	2	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	NEB-145	NM_004543	exon30	c.G3028T	p.A1010S	TCTGGGCCTGGTT	.	151	54	121	0	.	0	0	0	0	0	A	152537258	C	A	152537258	3	1	31	1	0	0	0	0	1	0	0	0	10331	739	26	3	23270	3	NEB	2	152537258	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	15974	152537258	90662115	410	5784										
NEB	4703	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	152563490	152563490	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tgcttttcctttattcttttCatagtcttctttgtatttta	3	7	4	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	NEB-145	NM_004543	exon13	c.G1057T	p.E353X	TCTTTTCATAGTC	.	38	11	41	0	.	0	0	0	0	0	A	152563490	C	A	152563490	4	1	31	1	0	0	0	0	0	1	0	0	10331	835	29	3	25309	3	NEB	2	152563490	Nonsense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	26232	152563490	90635883	411	5785										
CACNB4	785	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	152727077	152727077	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cagtgacggccccactaacaCcaccggacgcattgacggta	10	15	0	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CACNB4-24	NM_001145798	exon8	c.G667T	p.V223L	CTAACACCACCGG	.	333	100	251	0	.	0	0	0	0	0	A	152727077	C	A	152727077	3	1	31	1	0	0	0	0	1	0	0	0	2561	507	18	3	923	3	CACNB4	2	152727077	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	163587	152727077	90472296	412	5786										
RPRM	56475	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	154334873	154334873	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	aggaagaagatgccgaagacCacggtgagtgagagcacgca	15	8	0	5	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	RPRM-204	NM_019845	exon1	c.G207T	p.V69V	GAAGACCACGGTG	.	447	163	268	0	.	0	0	0	0	0	A	154334873	C	A	154334873	2	1	31	1	0	0	0	0	0	0	0	1	13653	581	21	3		3	RPRM	2	154334873	Silent	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	1607796	154334873	88864500	413	5787										
GALNT13	114805	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	154996920	154996920	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ttgattcctaaagatgaccaGgagaaaatgaaagagctgtt	10	5	0	6	rs114793552	bycluster;by1000genomes	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GALNT13-95	NM_052917	exon4	c.G213A	p.Q71Q	TGACCAGGAGAAA	.	147	53	146	0	G|1.000;A|0.000	0	0	0	0	0	A	154996920	G	A	154996920	2	1	31	1	0	0	0	0	0	0	0	1	6231	991	35	3		3	GALNT13	2	154996920	Silent	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	662047	154996920	88202453	414	5788										
BAZ2B	29994	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	160205740	160205740	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	aatattagaagtaaccacacCagtgggccatccacaaaact	6	11	0	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	BAZ2B-94	NM_013450	exon29	c.G4915C	p.G1639R	CCACACCAGTGGG	.	50	21	41	0	.	0	0	0	0	0	G	160205740	C	G	160205740	3	3	31	1	0	0	0	0	1	0	0	0	1333	594	21	3	1627	3	BAZ2B	2	160205740	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	5208820	160205740	82993633	415	5789										
SLC4A10	57282	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	162820704	162820704	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	catcaaccagattttatataCctaaggcacgtaccgcttcg	6	12	1	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SLC4A10-229	NM_001178015	exon22	c.C2922A	p.Y974X	TATATACCTAAGG	.	76	24	72	0	.	0	0	0	0	0	A	162820704	C	A	162820704	4	1	31	1	0	0	0	0	0	1	0	0	14686	518	18	3	3093	3	SLC4A10	2	162820704	Nonsense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	2614964	162820704	80378669	416	5790										
FAP	2191	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	163059625	163059625	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tttgtagtacgaaatggcatCatagctgaaaactggtgttg	11	5	1	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FAP-93	NM_004460	exon13	c.G1078A	p.D360N	TGGCATCATAGCT	.	95	29	100	0	.	0	0	0	0	0	T	163059625	C	T	163059625	3	4	31	1	0	0	0	0	1	0	0	0	5692	826	29	3	1260	3	FAP	2	163059625	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	238921	163059625	80139748	417	5791										
GRB14	2888	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	165353720	165353720	+	Splice_Site	SNP	C	C	A													0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	aatgactatgaacagacataCccatgtttgtggcagagctc					novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GRB14-420	NM_004490	exon12	c.1294+1G>T	.	GACATACCCATGT	.	172	56	161	0	.	0	0	0	0	0	A	165353720	C	A	165353720	5	1	31	1	0	0	0	0	0	0	1	0	6778	521	18	3	343	3	GRB14	2	165353720	Splice_Site	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	2294095	165353720	77845653	418	5792	54	2								
GRB14	2888	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	165353721	165353721	+	Missense_Mutation	SNP	C	C	A													0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	atgactatgaacagacatacCcatgtttgtggcagagctct					novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GRB14-420	NM_004490	exon11	c.G1294T	p.A432S	ACATACCCATGTT	.	172	56	163	1	.	0	0	0	0	0	A	165353721	C	A	165353721	3	1	31	1	0	0	0	0	1	0	0	0	6778	637	22	3	344	3	GRB14	2	165353721	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	1	165353721	77845652	419	5793	54	2								
SCN3A	6328	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	165947786	165947786	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gtaggattcggccaatcctgGcaagacggatcactcggaac	12	11	1	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SCN3A-141	NM_006922	exon28	c.C4877A	p.A1626D	ATCCTGGCAAGAC	.	240	72	243	0	.	0	0	0	0	0	T	165947786	G	T	165947786	3	4	31	1	0	0	0	0	1	0	0	0	13953	1203	42	3	1129	3	SCN3A	2	165947786	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	594065	165947786	77251587	420	5794										
SCN3A	6328	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	166032795	166032795	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cattatcttgttcctttttgGgcttcttggctttctcttct	6	10	4	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SCN3A-141	NM_001081676	exon3	c.C110A	p.P37H	TTTTTGGGCTTCT	.	113	44	92	0	.	0	0	0	0	0	T	166032795	G	T	166032795	3	4	31	1	0	0	0	0	1	0	0	0	13953	1232	43	3	6092	3	SCN3A	2	166032795	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	85009	166032795	77166578	421	5795										
SCN2A	6326	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	166198817	166198817	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ctcatttaggtcttcacaggGatcttcacagcagaaatgtt	8	9	5	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SCN2A-142	NM_001040143	exon14	c.G2400A	p.G800G	CACAGGGATCTTC	.	82	14	73	0	.	0	0	0	0	0	A	166198817	G	A	166198817	2	1	31	1	0	0	0	0	0	0	0	1	13951	1161	41	3		3	SCN2A	2	166198817	Silent	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	166022	166198817	77000556	422	5796										
SCN2A	6326	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	166198894	166198894	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tcaagaaggctggaatatttTtgatggttttattgtgagcc	11	4	1	3	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SCN2A-142	NM_001040143	exon14	c.T2477C	p.F826S	ATATTTTTGATGG	.	136	44	108	1	.	0	0	0	0	0	C	166198894	T	C	166198894	3	2	31	1	0	0	0	0	1	0	0	0	13951	1841	64	4	2627	4	SCN2A	2	166198894	Missense_Mutation	SNP	T	TCGA-OR-A5KB-01A-11D-A30A-10	77	166198894	77000479	423	5797										
CSRNP3	80034	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	166535679	166535679	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	acgatgatgacaaaggagatGgcttcgtggaaggtttgggc	16	5	0	3	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CSRNP3-157	NM_001172173	exon7	c.G1174T	p.G392C	GGAGATGGCTTCG	.	73	28	75	0	.	0	0	0	0	0	T	166535679	G	T	166535679	3	4	31	1	0	0	0	0	1	0	0	0	3971	1348	47	3	1188	3	CSRNP3	2	166535679	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	336785	166535679	76663694	424	5798										
CSRNP3	80034	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	166535970	166535970	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gacaagcagaagaggcctatGgtgcctcccactacccagct	10	14	0	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CSRNP3-157	NM_001172173	exon7	c.G1465A	p.G489S	GCCTATGGTGCCT	.	255	81	224	0	.	0	0	0	0	0	A	166535970	G	A	166535970	3	1	31	1	0	0	0	0	1	0	0	0	3971	1348	47	3	1479	3	CSRNP3	2	166535970	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	291	166535970	76663403	425	5799										
TTC21B	79809	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	166781171	166781171	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ctgagaagtggacaaagaggTtgcccaggacttgcaggcta	14	8	0	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TTC21B-94	NM_024753	exon12	c.A1404T	p.Q468H	AAGAGGTTGCCCA	.	132	56	133	0	.	0	0	0	0	0	A	166781171	T	A	166781171	3	1	31	1	0	0	0	0	1	0	0	0	16726	1722	60	5	2618	5	TTC21B	2	166781171	Missense_Mutation	SNP	T	TCGA-OR-A5KB-01A-11D-A30A-10	245201	166781171	76418202	426	5800										
SCN9A	6335	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	167060640	167060640	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ctttgaccctccttttctacCatcatggttaccatgttgag	6	12	2	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SCN9A-181	NM_002977	exon26	c.G4566T	p.M1522I	TTCTACCATCATG	.	101	26	104	0	.	0	0	0	0	0	A	167060640	C	A	167060640	3	1	31	1	0	0	0	0	1	0	0	0	13960	594	21	3	1375	3	SCN9A	2	167060640	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	279469	167060640	76138733	427	5801										
XIRP2	129446	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	168100697	168100697	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	aaaagataaaaaggagtacaCacgaacagtgaaacttgaag	9	5	0	3	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	XIRP2-104	NM_152381	exon9	c.C2795T	p.T932I	AGTACACACGAAC	.	154	50	174	0	.	0	0	0	0	0	T	168100697	C	T	168100697	3	4	31	1	0	0	0	0	1	0	0	0	17468	478	17	3	2825	3	XIRP2	2	168100697	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	1040057	168100697	75098676	428	5802										
XIRP2	129446	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	168107417	168107417	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tcacagagcaaacacttcccCttctccacccaggagtcgct	6	17	2	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	XIRP2-104	NM_152381	exon9	c.C9515A	p.P3172H	CTTCCCCTTCTCC	.	127	40	111	0	.	0	0	0	0	0	A	168107417	C	A	168107417	3	1	31	1	0	0	0	0	1	0	0	0	17468	681	24	3	9545	3	XIRP2	2	168107417	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	6720	168107417	75091956	429	5803										
XIRP2	129446	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	168107715	168107715	+	Nonsense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gtggagaagagagctacttaTgttcataaagatggactaaa	11	4	1	3	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	XIRP2-104	NM_152381	exon9	c.T9813G	p.Y3271X	TACTTATGTTCAT	.	175	65	137	0	.	0	0	0	0	0	G	168107715	T	G	168107715	4	3	31	1	0	0	0	0	0	1	0	0	17468	1471	51	5	9843	5	XIRP2	2	168107715	Nonsense_Mutation	SNP	T	TCGA-OR-A5KB-01A-11D-A30A-10	298	168107715	75091658	430	5804										
G6PC2	57818	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	169759005	169759005	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ggtccaagaaactcagatttAcccaaatcactcaagtccat	5	12	3	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	G6PC2-91	NM_021176	exon2	c.A269T	p.Y90F	AGATTTACCCAAA	.	81	26	111	0	.	0	0	0	0	0	T	169759005	A	T	169759005	3	4	31	1	0	0	0	0	1	0	0	0	6163	391	14	5	275	5	G6PC2	2	169759005	Missense_Mutation	SNP	A	TCGA-OR-A5KB-01A-11D-A30A-10	1651290	169759005	73440368	431	5805										
LRP2	4036	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	170088312	170088312	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ggcccctgtgaggaaagcagGcagagatggctgcagcggga	18	9	0	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	LRP2-175	NM_004525	exon31	c.C5139A	p.C1713X	AAGCAGGCAGAGA	.	443	151	419	0	.	0	0	0	0	0	T	170088312	G	T	170088312	4	4	31	1	0	0	0	0	0	1	0	0	8983	1195	42	3	9024	3	LRP2	2	170088312	Nonsense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	329307	170088312	73111061	432	5806										
SP5	389058	hgsc.bcm.edu	37	chr2	171573185	171573185	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gcggcgcaggccgcgctgccGccaggctactccaacctgct	13	18	0	0	rs1134626	byfrequency	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SP5-90	NM_001003845	exon2	c.G468T	p.P156P	GCTGCCGCCAGGC	.	20	17	0	0	G|0.766;T|0.234	0	0	0	0	0	T	171573185	G	T	171573185	2	4	31	1	0	0	0	0	0	0	0	1	15002	1074	38	2		2	SP5	2	171573185	Silent	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	1484873	171573185	71626188	433	5807										
HOXD13	3239	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	chr2	176957863	176957863	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gtaccccgggacctctgagcGcacgggctcttcctcgtcgt	12	16	2	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	HOXD13-658	NM_000523	exon1	c.G245T	p.R82L	CTGAGCGCACGGG	.	47	14	14	0	.	0	0	0	0	0	T	176957863	G	T	176957863	3	4	31	1	0	0	0	0	1	0	0	0	7343	1087	38	2	247	2	HOXD13	2	176957863	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	5384678	176957863	66241510	434	5808										
HOXD8	3234	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	176996244	176996244	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	aaaaaggaaaacaacaaggaCaaatttcccgtttcccggca	7	10	0	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	HOXD8-90	NM_019558	exon2	c.C777A	p.D259E	CAAGGACAAATTT	.	133	47	120	0	.	0	0	0	0	0	A	176996244	C	A	176996244	3	1	31	1	0	0	0	0	1	0	0	0	7346	477	17	3	783	3	HOXD8	2	176996244	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	38381	176996244	66203129	435	5809										
OSBPL6	114880	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	179209068	179209068	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tcggcgccggcagaggctagCggcagcagtggctacaacag	16	12	0	1	rs137879178	byfrequency;alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OSBPL6-69	NM_001201480	exon12	c.C1043A	p.A348E	GGCTAGCGGCAGC	.	120	38	99	0	C|0.999;T|0.001	0	0	0	0	0	A	179209068	C	A	179209068	3	1	31	1	0	0	0	0	1	0	0	0	11310	768	27	2	1124	2	OSBPL6	2	179209068	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	2212824	179209068	63990305	436	5810										
FKBP7	51661	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	179341878	179341878	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ctgtcatagcaatgtctaggCcttttatgacttgcccaaca	7	11	2	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FKBP7-90	NM_001135212	exon2	c.G284T	p.G95V	TCTAGGCCTTTTA	.	110	33	119	1	.	0	0	0	0	0	A	179341878	C	A	179341878	3	1	31	1	0	0	0	0	1	0	0	0	5932	739	26	3	396	3	FKBP7	2	179341878	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	132810	179341878	63857495	437	5811										
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	179406032	179406032	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ttggatccatggcaacgatgGgtttggaaggacgacttggt	15	6	0	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TTN-636	NM_001267550	exon350	c.C97772A	p.P32591H	ACGATGGGTTTGG	.	184	68	188	0	.	0	0	0	0	0	T	179406032	G	T	179406032	3	4	31	1	0	0	0	0	1	0	0	0	16773	1232	43	3	10259	3	TTN	2	179406032	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	64154	179406032	63793341	438	5812										
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	179422421	179422421	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gctgaatctatatgatcactGatgccaaagcggttttctgc	9	9	3	3	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TTN-636	NM_001267550	exon328	c.C87660A	p.I29220I	ATCACTGATGCCA	.	287	92	220	0	.	0	0	0	0	0	T	179422421	G	T	179422421	2	4	31	1	0	0	0	0	0	0	0	1	16773	1280	45	3		3	TTN	2	179422421	Silent	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	16389	179422421	63776952	439	5813										
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	179426459	179426459	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gtaggagctctttccatagcGgttttctgcacaaacacgga	10	10	2	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TTN-636	NM_001267550	exon326	c.C84400A	p.R28134S	CATAGCGGTTTTC	.	160	52	192	0	.	0	0	0	0	0	T	179426459	G	T	179426459	3	4	31	1	0	0	0	0	1	0	0	0	16773	1116	39	2	23727	2	TTN	2	179426459	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	4038	179426459	63772914	440	5814										
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	179426490	179426490	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	caaacacggaactgatactcActtcctgttgtcaggcgaac	8	12	2	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TTN-636	NM_001267550	exon326	c.T84369A	p.S28123R	ATACTCACTTCCT	.	186	67	211	0	.	0	0	0	0	0	T	179426490	A	T	179426490	3	4	31	1	0	0	0	0	1	0	0	0	16773	156	6	5	23758	5	TTN	2	179426490	Missense_Mutation	SNP	A	TCGA-OR-A5KB-01A-11D-A30A-10	31	179426490	63772883	441	5815										
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	179429435	179429435	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	agaaactttgaactcatactCaaggccctcatcaagcccag	6	13	4	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TTN-636	NM_001267550	exon326	c.G81424T	p.E27142X	CATACTCAAGGCC	.	126	22	132	0	.	0	0	0	0	0	A	179429435	C	A	179429435	4	1	31	1	0	0	0	0	0	1	0	0	16773	835	29	3	26703	3	TTN	2	179429435	Nonsense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	2945	179429435	63769938	442	5816										
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	179430005	179430005	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tgcactatttgttgccgttaCggtgtattttccaaagtcat	8	8	1	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TTN-636	NM_001267550	exon326	c.G80854A	p.V26952I	CCGTTACGGTGTA	.	289	95	259	0	.	0	0	0	0	0	T	179430005	C	T	179430005	3	4	31	1	0	0	0	0	1	0	0	0	16773	536	19	1	27273	1	TTN	2	179430005	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	570	179430005	63769368	443	5817										
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	179437248	179437248	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	agaggtgggtcccatgtgagTgtgacagatgtcttagtgac	15	6	1	5	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TTN-636	NM_001267550	exon326	c.A73611G	p.T24537T	TGTGAGTGTGACA	.	121	44	92	0	.	0	0	0	0	0	C	179437248	T	C	179437248	2	2	31	1	0	0	0	0	0	0	0	1	16773	1683	59	4		4	TTN	2	179437248	Silent	SNP	T	TCGA-OR-A5KB-01A-11D-A30A-10	7243	179437248	63762125	444	5818										
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	179481738	179481739	+	Missense_Mutation	DNP	CA	CA	TT													0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	acttaaatccattgttggttCaactacaaagaagaaaagtt					novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	CA	CA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TTN-636	NM_001267550	exon256	c.T47877A	p.E13392K	TGGTTCAACTACA	.	31	2	46	0	.	0	0	0	0	0	TT	179481739	CA	TT	179481738	3	4	31	1	0	0	0	0	1	0	0	0	16773	835	29	3	60243	3	TTN	2	179481738	Missense_Mutation	DNP	CA	TCGA-OR-A5KB-01A-11D-A30A-10	44490	179481738	63717635	445	5819										
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	179482958	179482958	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	aggattgtcagtttctactgGctcaccagtgccaactctgt	9	11	4	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TTN-636	NM_001267550	exon252	c.C47227A	p.P15743T	CTACTGGCTCACC	.	99	33	109	0	.	0	0	0	0	0	T	179482958	G	T	179482958	3	4	31	1	0	0	0	0	1	0	0	0	16773	1203	42	3	60910	3	TTN	2	179482958	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	1220	179482958	63716415	446	5820										
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	179505334	179505334	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tacttcaacctcttcaacagGttttggaggtggtggttctg	11	8	4	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TTN-636	NM_001267550	exon221	c.C40657T	p.P13553S	CAACAGGTTTTGG	.	88	29	106	0	.	0	0	0	0	0	A	179505334	G	A	179505334	3	1	31	1	0	0	0	0	1	0	0	0	16773	1261	44	3	67604	3	TTN	2	179505334	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	22376	179505334	63694039	447	5821										
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	179517194	179517194	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gtgacaaatacctttaacagGtgtgacttcaggctttttag	9	7	1	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TTN-636	NM_001267550	exon202	c.C39118T	p.P13040S	TAACAGGTGTGAC	.	94	30	91	0	.	0	0	0	0	0	A	179517194	G	A	179517194	3	1	31	1	0	0	0	0	1	0	0	0	16773	1261	44	3	68797	3	TTN	2	179517194	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	11860	179517194	63682179	448	5822										
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	179560965	179560965	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gtcattatttttacttcttcAgctttagaggatacatcaat	5	7	4	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TTN-636	NM_001267550	exon114	c.T30834A	p.A10278A	TTCTTCAGCTTTA	.	19	7	22	0	.	0	0	0	0	0	T	179560965	A	T	179560965	2	4	31	1	0	0	0	0	0	0	0	1	16773	175	7	5		5	TTN	2	179560965	Silent	SNP	A	TCGA-OR-A5KB-01A-11D-A30A-10	43771	179560965	63638408	449	5823										
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	179598048	179598048	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tattggccactgtcgtgcagCtcagctgaataaaatttgag	10	8	1	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TTN-636	NM_001267550	exon54	c.G15972A	p.E5324E	GTGCAGCTCAGCT	.	99	31	96	0	.	0	0	0	0	0	T	179598048	C	T	179598048	2	4	31	1	0	0	0	0	0	0	0	1	16773	796	28	3		3	TTN	2	179598048	Silent	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	37083	179598048	63601325	450	5824										
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	179610937	179610937	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tgactgaacatttgaatacaGcatctgaattttctggaatt	7	6	2	4	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TTN-636	NM_133379	exon46	c.C16190A	p.A5397D	AATACAGCATCTG	.	62	23	69	0	.	0	0	0	0	0	T	179610937	G	T	179610937	3	4	31	1	0	0	0	0	1	0	0	0	16773	971	34	3	94107	3	TTN	2	179610937	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	12889	179610937	63588436	451	5825										
TTN	7273	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	179616717	179616717	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tcttcagaatctgaaaaggcGtcacgtgtatccctttctga	8	10	5	3	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TTN-636	NM_133379	exon46	c.C10410A	p.D3470E	AAAGGCGTCACGT	.	43	16	64	1	.	0	0	0	0	0	T	179616717	G	T	179616717	3	4	31	1	0	0	0	0	1	0	0	0	16773	1136	40	2	99887	2	TTN	2	179616717	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	5780	179616717	63582656	452	5826										
TTN	7273	bcgsc.ca;mdanderson.org	37	chr2	179634824	179634824	+	Silent	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gctttgcattccaattgcccGaccacagctgtgtattcccc	7	15	0	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TTN-636	NM_001267550	exon36	c.C8604A	p.V2868V	TTGCCCGACCACA	.	117	50	92	2	.	0	0	0	0	0	T	179634824	G	T	179634824	2	4	31	1	0	0	0	0	0	0	0	1	16773	1045	37	2		2	TTN	2	179634824	Silent	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	18107	179634824	63564549	453	5827										
NCKAP1	10787	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	183817593	183817593	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	taagttcacaaacgctttcaTtgcaggaaaatatgctatat	6	7	2	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	NCKAP1-92	NM_205842	exon23	c.A2449T	p.M817L	CTTTCATTGCAGG	.	152	46	122	0	.	0	0	0	0	0	A	183817593	T	A	183817593	3	1	31	1	0	0	0	0	1	0	0	0	10250	1493	52	5	995	5	NCKAP1	2	183817593	Missense_Mutation	SNP	T	TCGA-OR-A5KB-01A-11D-A30A-10	4182769	183817593	59381780	454	5828										
ZNF804A	91752	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	185800948	185800948	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ttgagttctgaggagaaaacTaactcttttcatccaccaga	7	9	3	4	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ZNF804A-163	NM_194250	exon4	c.T825C	p.T275T	GAAAACTAACTCT	.	60	19	63	0	.	0	0	0	0	0	C	185800948	T	C	185800948	2	2	31	1	0	0	0	0	0	0	0	1	18207	1509	53	4		4	ZNF804A	2	185800948	Silent	SNP	T	TCGA-OR-A5KB-01A-11D-A30A-10	1983355	185800948	57398425	455	5829										
FSIP2	401024	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	186670638	186670638	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	actcaaaaacatagtgagaaTgtatcaaaagttacttcaac	5	7	3	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FSIP2-90	NM_173651	exon17	c.T16872A	p.N5624K	TGAGAATGTATCA	.	139	56	131	0	.	0	0	0	0	0	A	186670638	T	A	186670638	3	1	31	1	0	0	0	0	1	0	0	0	6094	1461	51	5	16938	5	FSIP2	2	186670638	Missense_Mutation	SNP	T	TCGA-OR-A5KB-01A-11D-A30A-10	869690	186670638	56528735	456	5830										
FAM171B	165215	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	187625878	187625878	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	attccaaggacataactgccTaccacacagtgtttcttaca	5	12	1	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FAM171B-141	NM_177454	exon7	c.T1051C	p.Y351H	ACTGCCTACCACA	.	423	175	377	0	.	0	0	0	0	0	C	187625878	T	C	187625878	3	2	31	1	0	0	0	0	1	0	0	0	5507	1522	53	4	1077	4	FAM171B	2	187625878	Missense_Mutation	SNP	T	TCGA-OR-A5KB-01A-11D-A30A-10	955240	187625878	55573495	457	5831										
CALCRL	10203	broad.mit.edu	37	chr2	188245197	188245197	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tcagaattatgacataccttCactttctcgtgggtgttaac	7	9	3	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CALCRL-523	NM_001271751	exon6	c.G405A	p.V135V	TACCTTCACTTTC	.	59	4	60	0	.	0	0	0	0	0	T	188245197	C	T	188245197	2	4	31	1	0	0	0	0	0	0	0	1	2586	813	29	3		3	CALCRL	2	188245197	Silent	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	619319	188245197	54954176	458	5832										
PMS1	5378	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	190719368	190719368	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gacggaatatagtaaaacttGttttataagttccgttaagc	8	5	0	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PMS1-1396	NM_001128144	exon9	c.G1370C	p.C457S	AAACTTGTTTTAT	.	98	30	101	0	.	0	0	0	0	0	C	190719368	G	C	190719368	3	2	31	1	0	0	0	0	1	0	0	0	12171	1377	48	3	1400	3	PMS1	2	190719368	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	2474171	190719368	52480005	459	5833										
MSTN	2660	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	190927030	190927030	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	agccatcgctgctgtcatccCtctggacatcatactgatca	7	14	4	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MSTN-650	NM_005259	exon1	c.G293T	p.R98M	TCATCCCTCTGGA	.	208	87	176	1	.	0	0	0	0	0	A	190927030	C	A	190927030	3	1	31	1	0	0	0	0	1	0	0	0	9921	681	24	3	846	3	MSTN	2	190927030	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	207662	190927030	52272343	460	5834										
MSTN	2660	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	190927320	190927320	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	acacagagttgcagtttttgCatgattttaaaatcaatata	6	5	1	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MSTN-650	NM_005259	exon1	c.G3T	p.M1I	TTTTTGCATGATT	.	36	13	31	0	.	0	0	0	0	0	A	190927320	C	A	190927320	3	1	31	1	0	0	0	0	1	0	0	0	9921	710	25	3	1136	3	MSTN	2	190927320	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	290	190927320	52272053	461	5835										
TMEFF2	23671	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	192863915	192863915	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	attgaagttggtttgagaacAgtcaatattacacacacacc	7	8	1	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TMEFF2-524	NM_016192	exon6	c.T556A	p.C186S	GAGAACAGTCAAT	.	97	34	80	0	.	0	0	0	0	0	T	192863915	A	T	192863915	3	4	31	1	0	0	0	0	1	0	0	0	16051	188	7	5	588	5	TMEFF2	2	192863915	Missense_Mutation	SNP	A	TCGA-OR-A5KB-01A-11D-A30A-10	1936595	192863915	50335458	462	5836										
TMEFF2	23671	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	193044393	193044393	+	Splice_Site	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	atgtaaaaaggcaactcctaCctccatctccagatcctgat	5	13	1	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TMEFF2-524	NM_016192	exon5	c.439+1G>T	.	CTCCTACCTCCAT	.	151	60	207	0	.	0	0	0	0	0	A	193044393	C	A	193044393	5	1	31	1	0	0	0	0	0	0	1	0	16051	521	18	3	712	3	TMEFF2	2	193044393	Splice_Site	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	180478	193044393	50154980	463	5837										
DNAH7	56171	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	196737099	196737099	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gtagtgagatttagctggagTaggcaagagattcttcattg	13	4	2	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DNAH7-102	NM_018897	exon40	c.A6508T	p.T2170S	CTGGAGTAGGCAA	.	168	54	128	1	.	0	0	0	0	0	A	196737099	T	A	196737099	3	1	31	1	0	0	0	0	1	0	0	0	4617	1638	57	5	5670	5	DNAH7	2	196737099	Missense_Mutation	SNP	T	TCGA-OR-A5KB-01A-11D-A30A-10	3692706	196737099	46462274	464	5838										
CCDC150	284992	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	197511082	197511082	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	taggtacatatggaaactacAgtgtccagaccggtcctttc	9	10	0	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_001080539	exon2	c.A30G	p.T10T	AACTACAGTGTCC	.	256	89	214	1	.	0	0	0	0	0	G	197511082	A	G	197511082	2	3	31	1	0	0	0	0	0	0	0	1	2791	175	7	4		4	CCDC150	2	197511082	Silent	SNP	A	TCGA-OR-A5KB-01A-11D-A30A-10	773983	197511082	45688291	465	5839										
PLCL1	5334	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	198950268	198950268	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gaattttcagactccgggtcCaatgatggaccttcacacgg	10	11	2	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PLCL1-228	NM_006226	exon2	c.C2027A	p.P676Q	CGGGTCCAATGAT	.	78	20	93	0	.	0	0	0	0	0	A	198950268	C	A	198950268	3	1	31	1	0	0	0	0	1	0	0	0	12068	594	21	3	2033	3	PLCL1	2	198950268	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	1439186	198950268	44249105	466	5840										
NBEAL1	65065	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	204039945	204039945	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cactattcaaattctgcgggGgtcatgcactatctcattcg	8	11	4	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	NBEAL1-92	NM_001114132	exon41	c.G6312T	p.G2104G	TGCGGGGGTCATG	.	230	75	181	1	.	0	0	0	0	0	T	204039945	G	T	204039945	2	4	31	1	0	0	0	0	0	0	0	1	10216	1219	43	3		3	NBEAL1	2	204039945	Silent	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	5089677	204039945	39159428	467	5841										
ZDBF2	57683	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	207169902	207169902	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	agctcatttggattcagttaGcaaatgtgacccaaacaaag	8	8	2	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ZDBF2-3	NM_020923	exon5	c.G650T	p.S217I	CAGTTAGCAAATG	.	117	36	129	0	.	0	0	0	0	0	T	207169902	G	T	207169902	3	4	31	1	0	0	0	0	1	0	0	0	17636	971	34	3	660	3	ZDBF2	2	207169902	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	3129957	207169902	36029471	468	5842										
ZDBF2	57683	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	207170268	207170268	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	attcttttctaacatggattGtacccaagaagaaaagcatt	6	7	2	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ZDBF2-3	NM_020923	exon5	c.G1016A	p.C339Y	TGGATTGTACCCA	.	46	13	29	0	.	0	0	0	0	0	A	207170268	G	A	207170268	3	1	31	1	0	0	0	0	1	0	0	0	17636	1377	48	3	1026	3	ZDBF2	2	207170268	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	366	207170268	36029105	469	5843										
ZDBF2	57683	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	207174022	207174022	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tgtaattgtaaagcctctacTccctcaatgacaaaccaatg	5	11	2	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ZDBF2-3	NM_020923	exon5	c.T4770G	p.T1590T	CTCTACTCCCTCA	.	46	18	44	0	.	0	0	0	0	0	G	207174022	T	G	207174022	2	3	31	1	0	0	0	0	0	0	0	1	17636	1538	54	5		5	ZDBF2	2	207174022	Silent	SNP	T	TCGA-OR-A5KB-01A-11D-A30A-10	3754	207174022	36025351	470	5844										
ZDBF2	57683	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	207174333	207174333	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cagtcttcggaaggatccaaGaaatgctggcctaaaaggta	11	8	1	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ZDBF2-3	NM_020923	exon5	c.G5081T	p.R1694I	ATCCAAGAAATGC	.	69	28	50	0	.	0	0	0	0	0	T	207174333	G	T	207174333	3	4	31	1	0	0	0	0	1	0	0	0	17636	942	33	3	5091	3	ZDBF2	2	207174333	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	311	207174333	36025040	471	5845										
ADAM23	8745	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	207454220	207454220	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cgggaaggatggagaccggtGgattcagtgcagcaaacagt	16	7	1	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ADAM23-228	NM_003812	exon21	c.G1940T	p.W647L	ACCGGTGGATTCA	.	104	38	81	0	.	0	0	0	0	0	T	207454220	G	T	207454220	3	4	31	1	0	0	0	0	1	0	0	0	245	1357	47	3	2022	3	ADAM23	2	207454220	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	279887	207454220	35745153	472	5846										
DYTN	391475	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	207527859	207527859	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tgtggcatcttttgtgtttgGctttgtgccctggtgctgtg	14	7	1	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DYTN-23	NM_001093730	exon11	c.C1401A	p.S467R	TGTTTGGCTTTGT	.	307	100	264	0	.	0	0	0	0	0	T	207527859	G	T	207527859	3	4	31	1	0	0	0	0	1	0	0	0	4872	1194	42	3	343	3	DYTN	2	207527859	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	73639	207527859	35671514	473	5847										
FASTKD2	22868	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	207655353	207655353	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ttgggttcaagccaccccagAggattccttgctatgaaaat	9	10	1	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FASTKD2-118	NM_001136193	exon11	c.A1956G	p.R652R	CCCCAGAGGATTC	.	59	13	63	0	.	0	0	0	0	0	G	207655353	A	G	207655353	2	3	31	1	0	0	0	0	0	0	0	1	5705	301	11	4		4	FASTKD2	2	207655353	Silent	SNP	A	TCGA-OR-A5KB-01A-11D-A30A-10	127494	207655353	35544020	474	5848										
CRYGC	1420	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	208992943	208992943	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tattttaatacaaatccaccActctccgcaaagagcctgcc	4	14	1	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CRYGC-90	NM_020989	exon3	c.T509C	p.V170A	TCCACCACTCTCC	.	102	40	93	1	.	0	0	0	0	0	G	208992943	A	G	208992943	3	3	31	1	0	0	0	0	1	0	0	0	3922	159	6	4	19	4	CRYGC	2	208992943	Missense_Mutation	SNP	A	TCGA-OR-A5KB-01A-11D-A30A-10	1337590	208992943	34206430	475	5849										
CPS1	1373	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	211457659	211457659	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cagttccacccagaggtcacCccggggccaatagacactga	10	15	1	3	rs148322072	alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CPS1-162	NM_001122633	exon12	c.C1161G	p.T387T	GGTCACCCCGGGG	.	48	21	61	0	C|1.000;T|0.000	0	0	0	0	0	G	211457659	C	G	211457659	2	3	31	1	0	0	0	0	0	0	0	1	3829	610	22	3		3	CPS1	2	211457659	Silent	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	2464716	211457659	31741714	476	5850										
CPS1	1373	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	211512667	211512667	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ctatacaagaatggtgtcaaGatcatgggcacaagccccct	9	11	2	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CPS1-162	NM_001122633	exon27	c.G3240T	p.K1080N	TGTCAAGATCATG	.	475	148	459	2	.	0	0	0	0	0	T	211512667	G	T	211512667	3	4	31	1	0	0	0	0	1	0	0	0	3829	933	33	3	3346	3	CPS1	2	211512667	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	55008	211512667	31686706	477	5851										
CPS1	1373	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	211527846	211527846	+	Splice_Site	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tgttttttttttttccaacaGgctcccatgttttcctggcc	6	11	0	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CPS1-162	NM_001122633	exon34	c.3946-1G>T	.	CCAACAGGCTCCC	.	41	12	33	0	.	0	0	0	0	0	T	211527846	G	T	211527846	5	4	31	1	0	0	0	0	0	0	1	0	3829	1014	35	3	4079	3	CPS1	2	211527846	Splice_Site	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	15179	211527846	31671527	478	5852										
ERBB4	2066	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	212285242	212285242	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cctgagggaccaagtactccTcagcatccatcatatcttcc	6	15	3	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ERBB4-1461	NM_001042599	exon25	c.A3059T	p.E1020V	TACTCCTCAGCAT	.	76	38	95	0	.	0	0	0	0	0	A	212285242	T	A	212285242	3	1	31	1	0	0	0	0	1	0	0	0	5222	1551	54	5	883	5	ERBB4	2	212285242	Missense_Mutation	SNP	T	TCGA-OR-A5KB-01A-11D-A30A-10	757396	212285242	30914131	479	5853										
ERBB4	2066	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	212578300	212578300	+	Silent	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	caaggtttacacattttaatCccattttcttctacttccat	2	11	2	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ERBB4-1461	NM_001042599	exon8	c.G957T	p.G319G	TTTAATCCCATTT	.	99	38	63	0	.	0	0	0	0	0	A	212578300	C	A	212578300	2	1	31	1	0	0	0	0	0	0	0	1	5222	842	30	3		3	ERBB4	2	212578300	Silent	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	293058	212578300	30621073	480	5854										
ERBB4	2066	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	212589908	212589908	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gtcacattgttctgcacacaCcgtccttgtcactgcagaag	8	13	3	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ERBB4-1461	NM_001042599	exon6	c.G634T	p.V212L	CACACACCGTCCT	.	189	81	184	0	.	0	0	0	0	0	A	212589908	C	A	212589908	3	1	31	1	0	0	0	0	1	0	0	0	5222	507	18	3	3384	3	ERBB4	2	212589908	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	11608	212589908	30609465	481	5855										
ERBB4	2066	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	212812187	212812187	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ttaatccaagttcttgaagtCcaaagtttccatcttttctg	5	9	3	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ERBB4-1461	NM_001042599	exon3	c.G389T	p.G130V	TGAAGTCCAAAGT	.	116	44	90	1	.	0	0	0	0	0	A	212812187	C	A	212812187	3	1	31	1	0	0	0	0	1	0	0	0	5222	855	30	3	3641	3	ERBB4	2	212812187	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	222279	212812187	30387186	482	5856										
PRKAG3	53632	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	219695074	219695074	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ggaatgtggcctccagcccgGtggactcagcagctggcctg	15	13	1	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PRKAG3-659	NM_017431	exon4	c.C260T	p.T87I	AGCCCGGTGGACT	.	203	63	153	0	.	0	0	0	0	0	A	219695074	G	A	219695074	3	1	31	1	0	0	0	0	1	0	0	0	12534	1261	44	3	1249	3	PRKAG3	2	219695074	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	6882887	219695074	23504299	483	5857										
WNT10A	80326	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	219746981	219746981	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gccaggcctgagccggcggcAgatggaggtgtgtgtgcgtc	19	10	0	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	WNT10A-523	NM_025216	exon2	c.A212G	p.Q71R	GGCGGCAGATGGA	.	312	112	248	1	.	0	0	0	0	0	G	219746981	A	G	219746981	3	3	31	1	0	0	0	0	1	0	0	0	17420	188	7	4	218	4	WNT10A	2	219746981	Missense_Mutation	SNP	A	TCGA-OR-A5KB-01A-11D-A30A-10	51907	219746981	23452392	484	5858										
ANKZF1	55139	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	220098512	220098512	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gtacaatactgttgcgtgctCcccgctctggccggtctttg	11	13	2	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ANKZF1-92	NM_001042410	exon8	c.C895G	p.P299A	CGTGCTCCCCGCT	.	115	23	100	0	.	0	0	0	0	0	G	220098512	C	G	220098512	3	3	31	1	0	0	0	0	1	0	0	0	693	855	30	3	921	3	ANKZF1	2	220098512	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	351531	220098512	23100861	485	5859										
PTPRN	5798	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr2	220159708	220159708	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cgcgctcacctgcggaagtcCagcaggggccgcgtggaggc	17	14	1	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PTPRN-229	NM_002846	exon19	c.G2664A	p.L888L	GAAGTCCAGCAGG	.	109	40	28	0	.	0	0	0	0	0	T	220159708	C	T	220159708	2	4	31	1	0	0	0	0	0	0	0	1	12842	581	21	3		3	PTPRN	2	220159708	Silent	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	61196	220159708	23039665	486	5860										
PTPRN	5798	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	220172174	220172174	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cccagaccttaccttgggacAtgagttgtcggagcacacct	10	13	0	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PTPRN-229	NM_002846	exon3	c.T272G	p.M91R	TGGGACATGAGTT	.	57	22	55	1	.	0	0	0	0	0	C	220172174	A	C	220172174	3	2	31	1	0	0	0	0	1	0	0	0	12842	217	8	5	2751	5	PTPRN	2	220172174	Missense_Mutation	SNP	A	TCGA-OR-A5KB-01A-11D-A30A-10	12466	220172174	23027199	487	5861										
DNPEP	23549	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	220239604	220239605	+	Missense_Mutation	DNP	TC	TC	AT													0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	agggtgagggtctggaggacTcctgtggtgcaggccatctc					novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	TC	TC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DNPEP-90	NM_012100	exon14	c.G1379A	p.G468D	AGGACTCCTGTGG	.	121	0	72	0	.	0	0	0	0	0	AT	220239605	TC	AT	220239604	3	1	31	1	0	0	0	0	1	0	0	0	4690	1538	54	5	85	5	DNPEP	2	220239604	Missense_Mutation	DNP	TC	TCGA-OR-A5KB-01A-11D-A30A-10	67430	220239604	22959769	488	5862										
CHPF	79586	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	220405282	220405282	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cctcaaagcgggaggccgggCgggatggtgctggaataccc	17	11	1	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CHPF-90	NM_024536	exon4	c.G1151T	p.R384L	GCCGGGCGGGATG	.	191	61	109	0	.	0	0	0	0	0	A	220405282	C	A	220405282	3	1	31	1	0	0	0	0	1	0	0	0	3374	768	27	2	1180	2	CHPF	2	220405282	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	165678	220405282	22794091	489	5863										
OBSL1	23363	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	220419228	220419228	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gtctggctgcgcagcgcaggGaatccgctgtgaaggagaca	16	10	1	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OBSL1-71	NM_015311	exon15	c.C4844A	p.S1615Y	CGCAGGGAATCCG	.	384	130	318	1	.	0	0	0	0	0	T	220419228	G	T	220419228	3	4	31	1	0	0	0	0	1	0	0	0	10842	1174	41	3	874	3	OBSL1	2	220419228	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	13946	220419228	22780145	490	5864										
OBSL1	23363	hgsc.bcm.edu	37	chr2	220435375	220435375	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ccgagccgccaggatgcgcaGtgccaggctcgcgccggggc	17	16	0	0	rs1061399	byfrequency	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OBSL1-71	NM_001173431	exon1	c.C580T	p.L194L	TGCGCAGTGCCAG	.	7	7	0	0	G|0.621;A|0.379	0	0	0	0	0	A	220435375	G	A	220435375	2	1	31	1	0	0	0	0	0	0	0	1	10842	1020	36	3		3	OBSL1	2	220435375	Silent	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	16147	220435375	22763998	491	5865										
SLC4A3	6508	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	220493241	220493241	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	acctcatcagcaagcccccgGcctgggaccccgagaagccc	10	19	2	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SLC4A3-157	NM_005070	exon3	c.G166T	p.A56S	CCCCCGGCCTGGG	.	467	161	316	0	.	0	0	0	0	0	T	220493241	G	T	220493241	3	4	31	1	0	0	0	0	1	0	0	0	14690	1203	42	3	172	3	SLC4A3	2	220493241	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	57866	220493241	22706132	492	5866										
SCG2	7857	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	224463929	224463929	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tgaaatgaagctgcttcagcCccagagatgaggaaaattaa	10	7	1	4	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SCG2-69	NM_003469	exon2	c.G72A	p.G24G	TTCAGCCCCAGAG	.	177	63	154	0	.	0	0	0	0	0	T	224463929	C	T	224463929	2	4	31	1	0	0	0	0	0	0	0	1	13926	610	22	3		3	SCG2	2	224463929	Silent	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	3970688	224463929	18735444	493	5867										
SPHKAP	80309	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	228858308	228858308	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gtccagatccataatgccaaGactgctagtggcactactgt	9	11	0	2	rs192502309		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SPHKAP-167	NM_001142644	exon9	c.C4663A	p.L1555I	TGCCAAGACTGCT	.	200	69	163	0	G|0.999;T|0.001	0	0	0	0	0	T	228858308	G	T	228858308	3	4	31	1	0	0	0	0	1	0	0	0	15085	942	33	3	455	3	SPHKAP	2	228858308	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	4394379	228858308	14341065	494	5868										
SPHKAP	80309	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	228882596	228882596	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gggaggcttgtgtttcctcaCagcggtcccgctcccctggc	13	15	1	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SPHKAP-167	NM_030623	exon7	c.G2974T	p.V992L	TCCTCACAGCGGT	.	105	34	103	1	.	0	0	0	0	0	A	228882596	C	A	228882596	3	1	31	1	0	0	0	0	1	0	0	0	15085	478	17	3	2152	3	SPHKAP	2	228882596	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	24288	228882596	14316777	495	5869			3	32		6	6	2170	N	T_G_C	9.75956e-07
SPHKAP	80309	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	228883407	228883407	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	acaatatgactcatcttcttGaacgtgaagcatatcacatc	5	10	4	3	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SPHKAP-167	NM_030623	exon7	c.C2163G	p.F721L	CTTCTTGAACGTG	.	118	37	97	0	.	0	0	0	0	0	C	228883407	G	C	228883407	3	2	31	1	0	0	0	0	1	0	0	0	15085	1281	45	3	2963	3	SPHKAP	2	228883407	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	811	228883407	14315966	496	5870			3	32		6	6	2170	N	T_G_C	9.75956e-07
SPHKAP	80309	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	228883709	228883709	+	Nonsense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	taaaaccagagcagcctcctTgagcaatcccttggcaatgg	9	12	0	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SPHKAP-167	NM_030623	exon7	c.A1861T	p.K621X	CCTCCTTGAGCAA	.	157	57	140	0	.	0	0	0	0	0	A	228883709	T	A	228883709	4	1	31	1	0	0	0	0	0	1	0	0	15085	1821	63	5	3265	5	SPHKAP	2	228883709	Nonsense_Mutation	SNP	T	TCGA-OR-A5KB-01A-11D-A30A-10	302	228883709	14315664	497	5871			3	32		6	6	2170	N	T_G_C	9.75956e-07
SPHKAP	80309	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	228883760	228883760	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	aagctccatgcttgctaaacCacaaagtgggggcatggctt	11	10	0	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SPHKAP-167	NM_030623	exon7	c.G1810C	p.G604R	CTAAACCACAAAG	.	102	38	111	0	.	0	0	0	0	0	G	228883760	C	G	228883760	3	3	31	1	0	0	0	0	1	0	0	0	15085	594	21	3	3316	3	SPHKAP	2	228883760	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	51	228883760	14315613	498	5872			3	32		6	6	2170	N	T_G_C	9.75956e-07
SPHKAP	80309	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	228884194	228884194	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ctggctgtggggcagcatcaCtgccatctggactctgaaca	12	12	3	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SPHKAP-167	NM_030623	exon7	c.G1376A	p.S459N	GCATCACTGCCAT	.	89	35	69	0	.	0	0	0	0	0	T	228884194	C	T	228884194	3	4	31	1	0	0	0	0	1	0	0	0	15085	565	20	3	3750	3	SPHKAP	2	228884194	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	434	228884194	14315179	499	5873			3	32		6	6	2170	N	T_G_C	9.75956e-07
SPHKAP	80309	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	228884765	228884765	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tttgttgatgtatttgtcttCcaaagcataaagccactttt	6	7	1	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SPHKAP-167	NM_030623	exon7	c.G805T	p.E269X	TGTCTTCCAAAGC	.	109	34	95	0	.	0	0	0	0	0	A	228884765	C	A	228884765	4	1	31	1	0	0	0	0	0	1	0	0	15085	864	30	3	4321	3	SPHKAP	2	228884765	Nonsense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	571	228884765	14314608	500	5874			3	32		6	6	2170	N	T_G_C	9.75956e-07
PID1	55022	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	229890643	229890643	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tatccatgtgcactgtggccTcccctttgtggtcgagatga	11	11	0	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PID1-94	NM_017933	exon4	c.A452T	p.E151V	GTGGCCTCCCCTT	.	254	80	219	0	.	0	0	0	0	0	A	229890643	T	A	229890643	3	1	31	1	0	0	0	0	1	0	0	0	11911	1551	54	5	298	5	PID1	2	229890643	Missense_Mutation	SNP	T	TCGA-OR-A5KB-01A-11D-A30A-10	1005878	229890643	13308730	501	5875										
TRIP12	9320	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	230723756	230723756	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ggtggtacagtggaggaggcCgaggctacagcagaagacga	18	7	0	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TRIP12-572	NM_004238	exon3	c.G633C	p.S211S	GGAGGCCGAGGCT	.	88	27	72	0	.	0	0	0	0	0	G	230723756	C	G	230723756	2	3	31	1	0	0	0	0	0	0	0	1	16594	639	23	2		2	TRIP12	2	230723756	Silent	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	833113	230723756	12475617	502	5876										
ALPP	250	bcgsc.ca	37	chr2	233245385	233245385	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	atccaccgagactccacactGgacccctccctgatggagat	8	16	0	3	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ALPP-91	NM_001632	exon8	c.G918C	p.L306L	CACACTGGACCCC	.	528	185	405	4	.	0	0	0	0	0	C	233245385	G	C	233245385	2	2	31	1	0	0	0	0	0	0	0	1	548	1335	47	3		3	ALPP	2	233245385	Silent	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	2521629	233245385	9953988	503	5877										
ALPPL2	251	broad.mit.edu	37	chr2	233273466	233273466	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	atccaccgagactccacactGgacccctccctgatggagat	8	16	0	3	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ALPPL2-91	NM_031313	exon8	c.G909C	p.L303L	CACACTGGACCCC	.	125	74	82	1	.	0	0	0	0	0	C	233273466	G	C	233273466	2	2	31	1	0	0	0	0	0	0	0	1	549	1335	47	3		3	ALPPL2	2	233273466	Silent	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	28081	233273466	9925907	504	5878										
ALPI	248	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	233322794	233322794	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tggagatgacagaggctgccCtgcgcctgctgagcaggaac	15	11	0	4	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ALPI-90	NM_001631	exon8	c.C943A	p.L315M	GCTGCCCTGCGCC	.	505	180	339	1	.	0	0	0	0	0	A	233322794	C	A	233322794	3	1	31	1	0	0	0	0	1	0	0	0	543	680	24	3	973	3	ALPI	2	233322794	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	49328	233322794	9876579	505	5879										
SAG	6295	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	234229340	234229340	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	attgacgtgatcggcttgacCttccgcagggacctgtactt	11	11	0	3	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SAG-23	NM_000541	exon5	c.C246A	p.T82T	CTTGACCTTCCGC	.	149	55	118	0	.	0	0	0	0	0	A	234229340	C	A	234229340	2	1	31	1	0	0	0	0	0	0	0	1	13843	668	24	3		3	SAG	2	234229340	Silent	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	906546	234229340	8970033	506	5880										
UGT1A5	54579	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	234621950	234621950	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	aatcgttctttgaaacagaaCatcttctgatgaaattttct	5	7	4	4	rs200200998	alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	UGT1A5-3	NM_019078	exon1	c.C313A	p.H105N	ACAGAACATCTTC	.	116	36	128	0	C|1.000;T|0.000	0	0	0	0	0	A	234621950	C	A	234621950	3	1	31	1	0	0	0	0	1	0	0	0	16986	478	17	3	315	3	UGT1A5	2	234621950	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	392610	234621950	8577423	507	5881										
SH3BP4	23677	ucsc.edu;bcgsc.ca	37	chr2	235951205	235951205	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ttcaggtgaaggacgaccagGaggccatcctcacccagttt	11	12	2	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SH3BP4-94	NM_014521	exon4	c.G1792T	p.E598X	GACCAGGAGGCCA	.	159	57	147	2	.	0	0	0	0	0	T	235951205	G	T	235951205	4	4	31	1	0	0	0	0	0	1	0	0	14281	1175	41	3	1798	3	SH3BP4	2	235951205	Nonsense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	1329255	235951205	7248168	508	5882										
COL6A3	1293	ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	238280884	238280884	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	agcccacgtccaggtagtcaAccagcctctctatgagggtg	11	13	2	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	COL6A3-526	NM_004369	exon9	c.T3776A	p.V1259D	TAGTCAACCAGCC	.	110	55	120	1	.	0	0	0	0	0	T	238280884	A	T	238280884	3	4	31	1	0	0	0	0	1	0	0	0	3707	43	2	5	5948	5	COL6A3	2	238280884	Missense_Mutation	SNP	A	TCGA-OR-A5KB-01A-11D-A30A-10	2329679	238280884	4918489	509	5883										
TRAF3IP1	26146	broad.mit.edu	37	chr2	239237714	239237715	+	Frame_Shift_Del	DEL	GA	GA	-													0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gaaacagacacagagaagggGagagagagagagccaaagcc					novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TRAF3IP1-228	NM_015650	exon5	c.646_647del	p.216_216del	GAAGGGGAGAGAG	.	249	7	198	0	.	0	0	0	0	0	-	239237715	GA	-	239237714	7	5	31	1	0	1	0	1	0	0	0	0	16478	1175	41	0	664	0	TRAF3IP1	2	239237714	Frame_Shift_Del	DEL	GA	TCGA-OR-A5KB-01A-11D-A30A-10	956830	239237714	3961659	510	5884										
NDUFA10	4705	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	240951052	240951052	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	acctcatctcagggagaaagGttttcttataggcattctca	8	9	4	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	NDUFA10-514	NM_004544	exon6	c.C731G	p.T244S	AGAAAGGTTTTCT	.	92	31	125	1	.	0	0	0	0	0	C	240951052	G	C	240951052	3	2	31	1	0	0	0	0	1	0	0	0	10289	1261	44	3	356	3	NDUFA10	2	240951052	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	1713338	240951052	2248321	511	5885										
OTOS	150677	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	241078654	241078654	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ggaagtgggcaaagaaggttCgggccatgtcctcgatctgg	16	8	1	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OTOS-68	NM_148961	exon4	c.G203A	p.R68Q	AAGGTTCGGGCCA	.	229	31	227	0	.	0	0	0	0	0	T	241078654	C	T	241078654	3	4	31	1	0	0	0	0	1	0	0	0	11338	884	31	1	70	1	OTOS	2	241078654	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	127602	241078654	2120719	512	5886										
KIF1A	547	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	241658532	241658532	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tgtacatgtaggcataggggCgccgcaccaccacgaagcgc	13	13	0	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	KIF1A-91	NM_001244008	exon47	c.G5105T	p.R1702L	TAGGGGCGCCGCA	.	269	104	164	0	.	0	0	0	0	0	A	241658532	C	A	241658532	3	1	31	1	0	0	0	0	1	0	0	0	8304	768	27	2	282	2	KIF1A	2	241658532	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	579878	241658532	1540841	513	5887										
KIF1A	547	hgsc.bcm.edu	37	chr2	241696843	241696843	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	aggtcctcctcctcctcatcCtcctcctcctcctcctcctc	2	24	1	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	KIF1A-91	NM_001244008	exon27	c.G2751T	p.E917D	CTCATCCTCCTCC	.	291	13	225	0	.	0	0	0	0	0	A	241696843	C	A	241696843	3	1	31	1	0	0	0	0	1	0	0	0	8304	696	24	3		3	KIF1A	2	241696843	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	38311	241696843	1502530	514	5888										
AGXT	189	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	241812461	241812461	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gacccccctttacatggaccGgcaaggtaagggtgggctct	13	12	1	0	rs34664134	byfrequency;alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	AGXT-90	NM_000030	exon5	c.G590T	p.R197L	TGGACCGGCAAGG	.	141	46	107	0	G|0.993;A|0.007	0	0	0	0	0	T	241812461	G	T	241812461	3	4	31	1	0	0	0	0	1	0	0	0	404	1116	39	2	608	2	AGXT	2	241812461	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	115618	241812461	1386912	515	5889										
PASK	23178	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	242066763	242066763	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	aagatcctgtccggggctctCtattgccacaggttcctctc	9	14	2	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PASK-536	NM_015148	exon10	c.G1567T	p.E523X	GGCTCTCTATTGC	.	106	41	87	0	.	0	0	0	0	0	A	242066763	C	A	242066763	4	1	31	1	0	0	0	0	0	1	0	0	11501	922	32	3	2440	3	PASK	2	242066763	Nonsense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	254302	242066763	1132610	516	5890										
HDLBP	3069	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	242192402	242192402	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gctcttcccaatgaggtgccTgtggaacttgtggtcgatgt	13	9	1	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	HDLBP-290	NM_005336	exon11	c.A1342T	p.R448W	GGTGCCTGTGGAA	.	220	68	192	0	.	0	0	0	0	0	A	242192402	T	A	242192402	3	1	31	1	0	0	0	0	1	0	0	0	7046	1579	55	5	2536	5	HDLBP	2	242192402	Missense_Mutation	SNP	T	TCGA-OR-A5KB-01A-11D-A30A-10	125639	242192402	1006971	517	5891										
ATG4B	23192	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	242606247	242606247	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	aacgaggcctacgtggagacGctgaaggtgggtcctgccgt	16	10	0	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_178326	exon8	c.G726T	p.T242T	GGAGACGCTGAAG	.	63	22	48	0	.	0	0	0	0	0	T	242606247	G	T	242606247	2	4	31	1	0	0	0	0	0	0	0	1	1098	1074	38	2		2	ATG4B	2	242606247	Silent	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	413845	242606247	593126	518	5892										
CHL1	10752	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	361487	361487	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cgcttttacttggaagaggaCtaatcgtatatctaatgttc	8	7	1	1	rs139673243		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CHL1-583	NM_001253388	exon1	c.C28G	p.L10V	AGAGGACTAATCG	.	30	19	43	0	C|1.000;G|0.000	0	0	0	0	0	G	361487	C	G	361487	3	3	31	1	0	0	0	0	1	0	0	0	3355	564	20	3	30	3	CHL1	3	361487	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10		361487	197660943	519	5893										
ITPR1	3708	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	4693830	4693830	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gtccagcatgacccatgtcgGggcggagcagggtattggaa	16	9	0	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ITPR1-710	NM_001099952	exon11	c.G879T	p.R293R	ATGTCGGGGCGGA	.	163	110	138	0	.	0	0	0	0	0	T	4693830	G	T	4693830	2	4	31	1	0	0	0	0	0	0	0	1	7941	1219	43	3		3	ITPR1	3	4693830	Silent	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	4332343	4693830	193328600	520	5894										
GRM7	2917	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	6903300	6903300	+	Silent	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gacatcaagagggaaaacggGatccacaggctggaagcgat	14	8	1	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GRM7-526	NM_000844	exon1	c.G225T	p.G75G	AAACGGGATCCAC	.	246	165	173	1	.	0	0	0	0	0	T	6903300	G	T	6903300	2	4	31	1	0	0	0	0	0	0	0	1	6823	1161	41	3		3	GRM7	3	6903300	Silent	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	2209470	6903300	191119130	521	5895										
SETD5	55209	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	9483874	9483874	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	agagatgtgtgtggatgcccGtactttcggtaatgatgctc	13	7	0	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SETD5-70	NM_001080517	exon10	c.G1022T	p.R341L	ATGCCCGTACTTT	.	65	41	68	0	.	0	0	0	0	0	T	9483874	G	T	9483874	3	4	31	1	0	0	0	0	1	0	0	0	14169	1145	40	2	1052	2	SETD5	3	9483874	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	2580574	9483874	188538556	522	5896										
ARPC4	10093	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	9839433	9839433	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tctcctcccaggttgtggaaCgacacaacaagccggaagtg	11	12	1	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ARPC4-90	NM_001198780	exon2	c.C151A	p.R51R	GTGGAACGACACA	.	87	56	76	1	.	0	0	0	0	0	A	9839433	C	A	9839433	2	1	31	1	0	0	0	0	0	0	0	1	974	528	19	2		2	ARPC4	3	9839433	Silent	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	355559	9839433	188182997	523	5897										
WNT7A	7476	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	13896295	13896295	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gtaggtgaacgcagcctcccGgctccctgcgaggaggagag	16	12	0	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	WNT7A-948	NM_004625	exon3	c.C304A	p.R102R	CCTCCCGGCTCCC	.	62	45	52	0	.	0	0	0	0	0	T	13896295	G	T	13896295	2	4	31	1	0	0	0	0	0	0	0	1	17432	1115	39	2		2	WNT7A	3	13896295	Silent	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	4056862	13896295	184126135	524	5898										
ZNF385D	79750	broad.mit.edu;bcgsc.ca	37	chr3	21462870	21462870	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tgctgctgcggctgctgcagCtgctagaggatttggtagaa	15	8	0	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ZNF385D-156	NM_024697	exon8	c.G1024T	p.A342S	CTGCAGCTGCTAG	.	57	38	48	1	.	0	0	0	0	0	A	21462870	C	A	21462870	3	1	31	1	0	0	0	0	1	0	0	0	17915	797	28	3	167	3	ZNF385D	3	21462870	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	7566575	21462870	176559560	525	5899										
ZCWPW2	152098	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	28454817	28454817	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gaagagtctcagcttcatcaGtgtggatttaagattgtcta	10	6	4	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ZCWPW2-24	NM_001040432	exon2	c.G258T	p.Q86H	TCATCAGTGTGGA	.	130	98	124	2	.	0	0	0	0	0	T	28454817	G	T	28454817	3	4	31	1	0	0	0	0	1	0	0	0	17635	1020	36	3	260	3	ZCWPW2	3	28454817	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	6991947	28454817	169567613	526	5900										
TGFBR2	7048	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	30713626	30713626	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gaggagcggaagacggagttGgggaaacaatactggctgat	17	5	0	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TGFBR2-1698	NM_001024847	exon5	c.G1026T	p.L342F	GGAGTTGGGGAAA	.	113	74	160	1	.	0	0	0	0	0	T	30713626	G	T	30713626	3	4	31	1	0	0	0	0	1	0	0	0	15859	1339	47	3	1044	3	TGFBR2	3	30713626	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	2258809	30713626	167308804	527	5901										
SCN11A	11280	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	38936044	38936044	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ctgttgttcaggctcaggttGtgtgatgcgctgtgcattat	13	7	2	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SCN11A-99	NM_014139	exon15	c.C2815A	p.Q939K	CAGGTTGTGTGAT	.	100	55	119	1	.	0	0	0	0	0	T	38936044	G	T	38936044	3	4	31	1	0	0	0	0	1	0	0	0	13948	1386	48	3	2608	3	SCN11A	3	38936044	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	8222418	38936044	159086386	528	5902										
SCN11A	11280	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	38991675	38991675	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	catagagcttgggcaacttcCtggaggcctttaggtcaagc	12	10	1	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SCN11A-99	NM_014139	exon1	c.G179A	p.R60K	AACTTCCTGGAGG	.	111	70	129	2	.	0	0	0	0	0	T	38991675	C	T	38991675	3	4	31	1	0	0	0	0	1	0	0	0	13948	681	24	3	5300	3	SCN11A	3	38991675	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	55631	38991675	159030755	529	5903										
TTC21A	199223	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	39151570	39151570	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	aaagcatcaggcatcacccaGacgtgtccctgtgctccacc	8	16	2	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TTC21A-91	NM_001105513	exon3	c.G208T	p.D70Y	CACCCAGACGTGT	.	67	37	118	0	.	0	0	0	0	0	T	39151570	G	T	39151570	3	4	31	1	0	0	0	0	1	0	0	0	16725	942	33	3	218	3	TTC21A	3	39151570	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	159895	39151570	158870860	530	5904										
CX3CR1	1524	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	39307473	39307473	+	Silent	SNP	A	A	T													0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	aggacctcggggtagtcaccAaggcattcattttctttctg					novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CX3CR1-658	NM_001171174	exon2	c.T624A	p.L208L	GTCACCAAGGCAT	.	94	49	141	0	.	0	0	0	0	0	T	39307473	A	T	39307473	2	4	31	1	0	0	0	0	0	0	0	1	4081	117	5	5		5	CX3CR1	3	39307473	Silent	SNP	A	TCGA-OR-A5KB-01A-11D-A30A-10	155903	39307473	158714957	531	5905	55	2								
CX3CR1	1524	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	39307475	39307475	+	Missense_Mutation	SNP	G	G	T													0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gacctcggggtagtcaccaaGgcattcattttctttctgct					novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CX3CR1-658	NM_001171174	exon2	c.C622A	p.L208I	CACCAAGGCATTC	.	91	47	140	0	.	0	0	0	0	0	T	39307475	G	T	39307475	3	4	31	1	0	0	0	0	1	0	0	0	4081	1000	35	3	545	3	CX3CR1	3	39307475	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	2	39307475	158714955	532	5906	55	2								
CCDC13	152206	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	42787495	42787495	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gagctgctgaacgttgatgtCttccccaacctctctggcca	9	14	2	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CCDC13-91	NM_144719	exon7	c.G745A	p.D249N	TGATGTCTTCCCC	.	100	44	149	0	.	0	0	0	0	0	T	42787495	C	T	42787495	3	4	31	1	0	0	0	0	1	0	0	0	2771	913	32	3	1442	3	CCDC13	3	42787495	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	3480020	42787495	155234935	533	5907										
EXOSC7	23016	bcgsc.ca	37	chr3	45052775	45052775	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	atgcctccttgcagagtgttGtgcacaaggaagaaagcctg	12	9	0	2	rs6794	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	EXOSC7-90	NM_015004	exon8	c.G820C	p.V274L	AGTGTTGTGCACA	.	123	6	175	1	G|0.396;C|0.604	0	0	0	0	0	C	45052775	G	C	45052775	3	2	31	1	0	0	0	0	1	0	0	0	5332	1377	48	3	850	3	EXOSC7	3	45052775	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	2265280	45052775	152969655	534	5908										
CSPG5	10675	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	47618883	47618883	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ccatccagtccttcgaagtaGtcgatgtcaatgatatctga	8	10	2	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CSPG5-91	NM_006574	exon2	c.C633G	p.D211E	GAAGTAGTCGATG	.	55	29	78	1	.	0	0	0	0	0	C	47618883	G	C	47618883	3	2	31	1	0	0	0	0	1	0	0	0	3967	1020	36	3	1002	3	CSPG5	3	47618883	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	2566108	47618883	150403547	535	5909										
COL7A1	1294	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	48607044	48607044	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ccatgtcccccttggcacccCgtgggcctggaggccccagg	13	18	0	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	COL7A1-160	NM_000094	exon101	c.G7595C	p.R2532P	GCACCCCGTGGGC	.	75	44	86	0	.	0	0	0	0	0	G	48607044	C	G	48607044	3	3	31	1	0	0	0	0	1	0	0	0	3710	652	23	2	1311	2	COL7A1	3	48607044	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	988161	48607044	149415386	536	5910										
AMIGO3	386724	broad.mit.edu	37	chr3	49755684	49755684	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cggcggcagcagcggcagggTggggcgaacaggtagagcag	21	9	0	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	AMIGO3-91	NM_198722	exon1	c.A1215C	p.P405P	GCAGGGTGGGGCG	.	102	21	38	1	.	0	0	0	0	0	G	49755684	T	G	49755684	2	3	31	1	0	0	0	0	0	0	0	1	577	1683	59	5		5	AMIGO3	3	49755684	Silent	SNP	T	TCGA-OR-A5KB-01A-11D-A30A-10	1148640	49755684	148266746	537	5911										
DNAH1	25981	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	52402787	52402787	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	atattctcctcgttcatccgGgcgggggccatcacctccga	10	15	3	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DNAH1-67	NM_015512	exon37	c.G5796T	p.R1932R	CATCCGGGCGGGG	.	144	78	184	0	.	0	0	0	0	0	T	52402787	G	T	52402787	2	4	31	1	0	0	0	0	0	0	0	1	4608	1219	43	3		3	DNAH1	3	52402787	Silent	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	2647103	52402787	145619643	538	5912										
DNAH12	201625	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	57458294	57458294	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tcatcattttcatcaaagatGggattaattttcctaggcca	6	8	4	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DNAH12-47	NM_178504	exon14	c.C1755A	p.P585P	AAAGATGGGATTA	.	207	118	249	0	.	0	0	0	0	0	T	57458294	G	T	57458294	2	4	31	1	0	0	0	0	0	0	0	1	4611	1335	47	3		3	DNAH12	3	57458294	Silent	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	5055507	57458294	140564136	539	5913										
CADPS	8618	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	62535700	62535700	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cccgatacatggcctggaccCacaggatgcggtcttgttca	11	13	2	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CADPS-281	NM_003716	exon11	c.G1844T	p.W615L	TGGACCCACAGGA	.	166	90	175	0	.	0	0	0	0	0	A	62535700	C	A	62535700	3	1	31	1	0	0	0	0	1	0	0	0	2576	595	21	3	2370	3	CADPS	3	62535700	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	5077406	62535700	135486730	540	5914										
LRIG1	26018	hgsc.bcm.edu	37	chr3	66550756	66550756	+	Missense_Mutation	SNP	G	G	C													0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ggtcaccggctccagccgaaGcaaaagcagccagagaagga					rs1403625		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	LRIG1-230	NM_015541	exon1	c.C76G	p.L26V	GCCGAAGCAAAAG	.	5	5	0	0	G|0.237;C|0.763	0	0	0	0	0	C	66550756	G	C	66550756	3	2	31	1	0	0	0	0	1	0	0	0	8971	971	34	3	3281	3	LRIG1	3	66550756	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	4015056	66550756	131471674	541	5915	56	2								
LRIG1	26018	hgsc.bcm.edu	37	chr3	66550762	66550762	+	Missense_Mutation	SNP	G	G	C													0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cggctccagccgaagcaaaaGcagccagagaaggagaaggc					rs1403626	byfrequency	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	LRIG1-230	NM_015541	exon1	c.C70G	p.L24V	GCAAAAGCAGCCA	.	5	5	0	0	G|0.252;C|0.748	0	0	0	0	0	C	66550762	G	C	66550762	3	2	31	1	0	0	0	0	1	0	0	0	8971	971	34	3	3287	3	LRIG1	3	66550762	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	6	66550762	131471668	542	5916	56	2								
ROBO2	6092	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	77607213	77607213	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gatcctcttcctgtaattagCtggttaaaggagggatttac	10	7	1	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ROBO2-328	NM_002942	exon9	c.C1350A	p.S450R	AATTAGCTGGTTA	.	130	70	173	0	.	0	0	0	0	0	A	77607213	C	A	77607213	3	1	31	1	0	0	0	0	1	0	0	0	13549	796	28	3	1386	3	ROBO2	3	77607213	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	11056451	77607213	120415217	543	5917										
ROBO1	6091	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	78795964	78795964	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	aatggtgggctcaggatggcCtcgtggaggttggcattcca	16	8	1	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ROBO1-67	NM_002941	exon5	c.G586T	p.G196C	GATGGCCTCGTGG	.	79	44	97	0	.	0	0	0	0	0	A	78795964	C	A	78795964	3	1	31	1	0	0	0	0	1	0	0	0	13548	681	24	3	4490	3	ROBO1	3	78795964	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	1188751	78795964	119226466	544	5918										
POU1F1	5449	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	87322579	87322579	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	agtcctgttgctgtgtttccCaacgttgtcaccgagaaatg	10	10	1	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	POU1F1-226	NM_001122757	exon2	c.G210T	p.L70F	GTTTCCCAACGTT	.	79	46	156	0	.	0	0	0	0	0	A	87322579	C	A	87322579	3	1	31	1	0	0	0	0	1	0	0	0	12298	593	21	3	763	3	POU1F1	3	87322579	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	8526615	87322579	110699851	545	5919										
PROS1	5627	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	93617357	93617357	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	atcacaatagcaagtgtaacCtccagggtaattgacacaaa	7	9	1	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PROS1-153	NM_000313	exon8	c.G784T	p.G262C	TGTAACCTCCAGG	.	175	35	171	0	.	0	0	0	0	0	A	93617357	C	A	93617357	3	1	31	1	0	0	0	0	1	0	0	0	12590	681	24	3	1278	3	PROS1	3	93617357	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	6294778	93617357	104405073	546	5920										
EPHA6	285220	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	97466266	97466266	+	Splice_Site	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ttttgttttgttttcttacaGaatgccagagtcccctggtg	9	8	1	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	EPHA6-1561	NM_001080448	exon17	c.3129-1G>T	.	CTTACAGAATGCC	.	47	15	61	1	.	0	0	0	0	0	T	97466266	G	T	97466266	5	4	31	1	0	0	0	0	0	0	1	0	5184	956	33	3	3311	3	EPHA6	3	97466266	Splice_Site	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	3848909	97466266	100556164	547	5921										
OR5AC2	81050	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	97806110	97806110	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tgcacgtcctcttctttgttGtgtttttggtggtctatctc	9	9	4	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OR5AC2-69	NM_054106	exon1	c.G94T	p.V32L	TTTGTTGTGTTTT	.	169	38	160	2	.	0	0	0	0	0	T	97806110	G	T	97806110	3	4	31	1	0	0	0	0	1	0	0	0	11170	1377	48	3	96	3	OR5AC2	3	97806110	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	339844	97806110	100216320	548	5922										
OR5H2	79310	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	98002120	98002120	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ggcatatgatcgctatgtagCcatatgcaaacctttactat	7	9	0	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OR5H2-71	NM_001005482	exon1	c.C389A	p.A130D	ATGTAGCCATATG	.	147	54	122	1	.	0	0	0	0	0	A	98002120	C	A	98002120	3	1	31	1	0	0	0	0	1	0	0	0	11191	739	26	3	391	3	OR5H2	3	98002120	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	196010	98002120	100020310	549	5923										
IMPG2	50939	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	100948383	100948383	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ctttcatacacggggttgtaCttcacagcattctcaataga	7	10	3	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	IMPG2-93	NM_016247	exon17	c.G3474C	p.K1158N	GTTGTACTTCACA	.	93	54	74	0	.	0	0	0	0	0	G	100948383	C	G	100948383	3	3	31	1	0	0	0	0	1	0	0	0	7750	564	20	3	263	3	IMPG2	3	100948383	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	2946263	100948383	97074047	550	5924										
MORC1	27136	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	108812300	108812300	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tactcctccagagctccagcCatcagtatatcttctttgtc	5	14	3	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MORC1-98	NM_014429	exon8	c.G672T	p.M224I	TCCAGCCATCAGT	.	79	12	79	0	.	0	0	0	0	0	A	108812300	C	A	108812300	3	1	31	1	0	0	0	0	1	0	0	0	9729	594	21	3	2366	3	MORC1	3	108812300	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	7863917	108812300	89210130	551	5925										
BOC	91653	broad.mit.edu;bcgsc.ca	37	chr3	112992151	112992151	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gccgagaacgaggttgggagCgcccatgccgtagtccagct	15	12	0	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	BOC-157	NM_033254	exon8	c.C1197A	p.S399R	TGGGAGCGCCCAT	.	124	76	67	2	.	0	0	0	0	0	A	112992151	C	A	112992151	3	1	31	1	0	0	0	0	1	0	0	0	1482	767	27	2	1219	2	BOC	3	112992151	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	4179851	112992151	85030279	552	5926										
SIDT1	54847	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	113304098	113304098	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	acttgggatgccttcttgttGggtttgttcattatctgagg	12	6	3	1	rs199757460	alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SIDT1-95	NM_017699	exon9	c.G982T	p.G328W	CTTGTTGGGTTTG	.	101	54	107	0	G|1.000;A|0.000	0	0	0	0	0	T	113304098	G	T	113304098	3	4	31	1	0	0	0	0	1	0	0	0	14337	1348	47	3	1016	3	SIDT1	3	113304098	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	311947	113304098	84718332	553	5927										
IGSF11	152404	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	118621406	118621406	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cgactctgggctggtaccatGacaggtactgcaccaattcg	11	12	1	1	rs148424020	alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	IGSF11-90	NM_001015887	exon7	c.C1257A	p.V419V	TACCATGACAGGT	.	151	15	164	0	G|1.000;A|0.000	0	0	0	0	0	T	118621406	G	T	118621406	2	4	31	1	0	0	0	0	0	0	0	1	7619	1277	45	3		3	IGSF11	3	118621406	Silent	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	5317308	118621406	79401024	554	5928										
LRRC58	116064	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	120053716	120053716	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tgaattaacttacctccacaCtttgggtttgggcaattgct	8	9	0	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_001099678	exon3	c.G900T	p.K300N	TCCACACTTTGGG	.	93	12	92	0	.	0	0	0	0	0	A	120053716	C	A	120053716	3	1	31	1	0	0	0	0	1	0	0	0	9041	564	20	3	223	3	LRRC58	3	120053716	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	1432310	120053716	77968714	555	5929										
HGD	3081	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	120347254	120347254	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ggttctgctgggttcctggaGttgggagtgaagtggctctt	17	6	2	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	HGD-68	NM_000187	exon14	c.C1311A	p.N437K	CCTGGAGTTGGGA	.	120	20	118	0	.	0	0	0	0	0	T	120347254	G	T	120347254	3	4	31	1	0	0	0	0	1	0	0	0	7105	1020	36	3	30	3	HGD	3	120347254	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	293538	120347254	77675176	556	5930										
FBXO40	51725	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	121340603	121340603	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ccaaatgtggactctgaaacCacccttcatgaaaacatcat	5	12	3	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FBXO40-273	NM_016298	exon3	c.C327T	p.T109T	TGAAACCACCCTT	.	95	50	72	0	.	0	0	0	0	0	T	121340603	C	T	121340603	2	4	31	1	0	0	0	0	0	0	0	1	5768	581	21	3		3	FBXO40	3	121340603	Silent	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	993349	121340603	76681827	557	5931										
SEMA5B	54437	hgsc.bcm.edu	37	chr3	122631896	122631896	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tgctcccgctgcgcaggaggAcctccaccagggctgcggag	15	15	0	0	rs2276782	byfrequency	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SEMA5B-157	NM_001256347	exon18	c.T2681A	p.V894D	AGGAGGACCTCCA	.	25	18	1	0	T|0.412;A|0.588	0	0	0	0	0	T	122631896	A	T	122631896	3	4	31	1	0	0	0	0	1	0	0	0	14073	275	10	5	960	5	SEMA5B	3	122631896	Missense_Mutation	SNP	A	TCGA-OR-A5KB-01A-11D-A30A-10	1291293	122631896	75390534	558	5932										
SEMA5B	54437	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	122680055	122680055	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gctgttgggctggggtatcaGgcggcccagggacgaggtgg	21	8	1	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SEMA5B-157	NM_001256347	exon2	c.C218A	p.P73H	GTATCAGGCGGCC	.	297	159	248	1	.	0	0	0	0	0	T	122680055	G	T	122680055	3	4	31	1	0	0	0	0	1	0	0	0	14073	1000	35	3	3487	3	SEMA5B	3	122680055	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	48159	122680055	75342375	559	5933										
KALRN	8997	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	124017695	124017695	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tccagagccacacggagatcGgagtcagctaccagtacgcc	11	14	1	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	KALRN-738	NM_003947	exon6	c.G1021C	p.G341R	GAGATCGGAGTCA	.	214	107	178	0	.	0	0	0	0	0	C	124017695	G	C	124017695	3	2	31	1	0	0	0	0	1	0	0	0	7996	1117	39	2	1043	2	KALRN	3	124017695	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	1337640	124017695	74004735	560	5934										
ALDH1L1	10840	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	125869263	125869263	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tcttacccgcacagcctccgCagtaaccagctctgcctctg	7	18	3	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ALDH1L1-156	NM_001270364	exon8	c.G1000T	p.A334S	CCTCCGCAGTAAC	.	291	73	261	0	.	0	0	0	0	0	A	125869263	C	A	125869263	3	1	31	1	0	0	0	0	1	0	0	0	494	710	25	3	1802	3	ALDH1L1	3	125869263	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	1851568	125869263	72153167	561	5935										
UROC1	131669	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr3	126224620	126224620	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tcattccgccgagcccagagGtgacaaagaccttcccagcc	9	16	1	3	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	UROC1-91	NM_001165974	exon8	c.C737G	p.T246S	CCAGAGGTGACAA	.	226	50	159	0	.	0	0	0	0	0	C	126224620	G	C	126224620	3	2	31	1	0	0	0	0	1	0	0	0	17066	1261	44	3	1529	3	UROC1	3	126224620	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	355357	126224620	71797810	562	5936										
PODXL2	50512	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	127387303	127387303	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ggaggtgttccggcagcaccGggggccacagctcctggccc	16	15	0	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PODXL2-91	NM_015720	exon5	c.G1226T	p.R409L	AGCACCGGGGGCC	.	270	143	196	1	.	0	0	0	0	0	T	127387303	G	T	127387303	3	4	31	1	0	0	0	0	1	0	0	0	12210	1116	39	2	1244	2	PODXL2	3	127387303	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	1162683	127387303	70635127	563	5937										
IFT122	55764	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	129239080	129239080	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tggctgctgcccctactgccGcaggtgcaaggatgaccctg	13	14	0	1	rs201755623	alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	IFT122-92	NM_052985	exon31	c.G3851T	p.R1284L	ACTGCCGCAGGTG	.	106	64	65	1	G|0.999;A|0.001	0	0	0	0	0	T	129239080	G	T	129239080	3	4	31	1	0	0	0	0	1	0	0	0	7576	1087	38	2	3976	2	IFT122	3	129239080	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	1851777	129239080	68783350	564	5938										
TMCC1	23023	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	129373858	129373858	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ctgatacgcgattttttcttCcatgcttgccagttcctgct	7	12	1	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TMCC1-91	NM_001017395	exon5	c.G1600T	p.E534X	TTTCTTCCATGCT	.	105	21	82	0	.	0	0	0	0	0	A	129373858	C	A	129373858	4	1	31	1	0	0	0	0	0	1	0	0	16029	864	30	3	369	3	TMCC1	3	129373858	Nonsense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	134778	129373858	68648572	565	5939										
TRH	7200	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	129695711	129695712	+	Missense_Mutation	DNP	CG	CG	AA													0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gatgaggcttcatggtcagtCgatgtaacccagcacaagcg					novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	CG	CG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TRH-91	NM_007117	exon3	c.G382A	p.D128N	TCAGTCGATGTAA	.	188	5	189	0	.	0	0	0	0	0	AA	129695712	CG	AA	129695711	3	1	31	1	0	0	0	0	1	0	0	0	16516	871	31	2	387	2	TRH	3	129695711	Missense_Mutation	DNP	CG	TCGA-OR-A5KB-01A-11D-A30A-10	321853	129695711	68326719	566	5940										
COL6A5	256076	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	130159376	130159377	+	Missense_Mutation	DNP	CC	CC	AA													0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tggtcgtgccctactgtggaCcactgaaaatctttttccag					novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	CC	CC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_153264	exon35	c.C6195A	p.T2065K	GTGGACCACTGAA	.	146	30	126	0	.	0	0	0	0	0	AA	130159377	CC	AA	130159376	3	1	31	1	0	0	0	0	1	0	0	0	3708	507	18	3	6328	3	COL6A5	3	130159376	Missense_Mutation	DNP	CC	TCGA-OR-A5KB-01A-11D-A30A-10	463665	130159376	67863054	567	5941										
PRR23A	729627	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	138724701	138724701	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cgcagaagacttcctgctcaAcgacgacgtcctccctgaga	9	15	1	3	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_001134659	exon1	c.T410A	p.V137D	TGCTCAACGACGA	.	303	153	195	0	.	0	0	0	0	0	T	138724701	A	T	138724701	3	4	31	1	0	0	0	0	1	0	0	0	12626	43	2	5	394	5	PRR23A	3	138724701	Missense_Mutation	SNP	A	TCGA-OR-A5KB-01A-11D-A30A-10	8565325	138724701	59297729	568	5942										
PRR23C	389152	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	138762923	138762923	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ctgaacatacttctagcggaGgggtagagcccagcggctga	14	10	1	3	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PRR23C-23	NM_001134657	exon1	c.C540G	p.P180P	AGCGGAGGGGTAG	.	198	115	144	1	.	0	0	0	0	0	C	138762923	G	C	138762923	2	2	31	1	0	0	0	0	0	0	0	1	12628	987	35	3		3	PRR23C	3	138762923	Silent	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	38222	138762923	59259507	569	5943										
CLSTN2	64084	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	140167391	140167391	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gaggattgagtaccagcctgGctccgggagcatgcccctgt	14	12	0	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CLSTN2-157	NM_022131	exon6	c.G818T	p.G273V	AGCCTGGCTCCGG	.	196	37	221	0	.	0	0	0	0	0	T	140167391	G	T	140167391	3	4	31	1	0	0	0	0	1	0	0	0	3568	1203	42	3	840	3	CLSTN2	3	140167391	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	1404468	140167391	57855039	570	5944										
CLSTN2	64084	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	140265408	140265408	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gttctttcatggaagcctggCcagtctcaccatccgccctg	9	15	3	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CLSTN2-157	NM_022131	exon10	c.C1559A	p.A520D	GCCTGGCCAGTCT	.	300	172	240	1	.	0	0	0	0	0	A	140265408	C	A	140265408	3	1	31	1	0	0	0	0	1	0	0	0	3568	739	26	3	1597	3	CLSTN2	3	140265408	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	98017	140265408	57757022	571	5945										
SPSB4	92369	hgsc.bcm.edu	37	chr3	140785132	140785132	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tggaaccccgaggaccgctcGctcaacgtcttcgtcaagga	11	14	3	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SPSB4-226	NM_080862	exon2	c.G186T	p.S62S	CCGCTCGCTCAAC	.	129	26	4	0	.	0	0	0	0	0	T	140785132	G	T	140785132	2	4	31	1	0	0	0	0	0	0	0	1	15152	1074	38	2		2	SPSB4	3	140785132	Silent	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	519724	140785132	57237298	572	5946										
GK5	256356	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	141904794	141904794	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ggcaactattggtataggcaCaccaaatatctcttcatcca	6	11	2	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GK5-90	NM_001039547	exon9	c.G793T	p.V265L	TAGGCACACCAAA	.	127	12	102	0	.	0	0	0	0	0	A	141904794	C	A	141904794	3	1	31	1	0	0	0	0	1	0	0	0	6442	478	17	3	828	3	GK5	3	141904794	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	1119662	141904794	56117636	573	5947										
ATR	545	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	142232433	142232433	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	actttgaaatcatgcttcatCataatgctacagcaggtgaa	7	8	3	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ATR-1139	NM_001184	exon26	c.G4551C	p.M1517I	CTTCATCATAATG	.	469	88	395	0	.	0	0	0	0	0	G	142232433	C	G	142232433	3	3	31	1	0	0	0	0	1	0	0	0	1205	826	29	3	3471	3	ATR	3	142232433	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	327639	142232433	55789997	574	5948										
TRPC1	7220	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	142523389	142523389	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tcattccctcaccaaagactAtctgctatatgattagtagc	5	11	3	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TRPC1-92	NM_001251845	exon12	c.A2071G	p.I691V	AAGACTATCTGCT	.	263	44	247	0	.	0	0	0	0	0	G	142523389	A	G	142523389	3	3	31	1	0	0	0	0	1	0	0	0	16616	449	16	4	2011	4	TRPC1	3	142523389	Missense_Mutation	SNP	A	TCGA-OR-A5KB-01A-11D-A30A-10	290956	142523389	55499041	575	5949										
CPA3	1359	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	148586735	148586735	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	atccaggtgccacccaccacGtagctgctaatatgatggtg	10	12	0	1	rs138685459	alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CPA3-154	NM_001870	exon3	c.G178T	p.V60L	CACCACGTAGCTG	.	105	19	69	0	G|1.000;A|0.000	0	0	0	0	0	T	148586735	G	T	148586735	3	4	31	1	0	0	0	0	1	0	0	0	3797	1145	40	2	188	2	CPA3	3	148586735	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	6063346	148586735	49435695	576	5950										
CP	1356	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	148923984	148923984	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gctgttaagttttctttagtGaagatgtctataccagaggg	11	5	2	3	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CP-515	NM_000096	exon6	c.C1179T	p.F393F	TTTAGTGAAGATG	.	92	13	87	1	.	0	0	0	0	0	A	148923984	G	A	148923984	2	1	31	1	0	0	0	0	0	0	0	1	3793	1281	45	3		3	CP	3	148923984	Silent	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	337249	148923984	49098446	577	5951										
TM4SF1	4071	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	149095253	149095254	+	Missense_Mutation	DNP	GC	GC	TT													0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ttccccattgggaaagtaaaGcaaaatattagccgcgatgc					novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	GC	GC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TM4SF1-90	NM_014220	exon1	c.G81A	p.L28I	GTAAAGCAAAATA	.	241	30	276	0	.	0	0	0	0	0	TT	149095254	GC	TT	149095253	3	4	31	1	0	0	0	0	1	0	0	0	16003	971	34	3	546	3	TM4SF1	3	149095253	Missense_Mutation	DNP	GC	TCGA-OR-A5KB-01A-11D-A30A-10	171269	149095253	48927177	578	5952										
P2RY12	64805	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	151055969	151055969	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ctttacctacacccctcgttCttacgtatgaccggtacagt	6	14	1	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	P2RY12-501	NM_022788	exon3	c.G665C	p.R222T	CTCGTTCTTACGT	.	121	19	124	0	.	0	0	0	0	0	G	151055969	C	G	151055969	3	3	31	1	0	0	0	0	1	0	0	0	11378	913	32	3	367	3	P2RY12	3	151055969	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	1960716	151055969	46966461	579	5953										
IGSF10	285313	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	151166386	151166386	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	actggcctcatctctgctctTggtaaagtgatttgagcatc	9	10	3	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	IGSF10-102	NM_178822	exon4	c.A1383T	p.P461P	TGCTCTTGGTAAA	.	85	49	59	0	.	0	0	0	0	0	A	151166386	T	A	151166386	2	1	31	1	0	0	0	0	0	0	0	1	7618	1799	63	5		5	IGSF10	3	151166386	Silent	SNP	T	TCGA-OR-A5KB-01A-11D-A30A-10	110417	151166386	46856044	580	5954										
RAP2B	5912	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	152880651	152880651	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cgtcggtgctggagatcctgGatacggcgggcaccgagcag	17	11	0	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	RAP2B-847	NM_002886	exon1	c.G169T	p.D57Y	ATCCTGGATACGG	.	341	174	282	0	.	0	0	0	0	0	T	152880651	G	T	152880651	3	4	31	1	0	0	0	0	1	0	0	0	13076	1174	41	3	171	3	RAP2B	3	152880651	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	1714265	152880651	45141779	581	5955										
GPR149	344758	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	154146424	154146424	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gtgagcaactgcacttttacCatcatgggcagccaaaggac	10	11	1	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GPR149-96	NM_001038705	exon1	c.G981T	p.M327I	TTTTACCATCATG	.	341	191	221	1	.	0	0	0	0	0	A	154146424	C	A	154146424	3	1	31	1	0	0	0	0	1	0	0	0	6674	608	21	3	1230	3	GPR149	3	154146424	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	1265773	154146424	43876006	582	5956										
MME	4311	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	154884770	154884770	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	aactatgggggcatcggcatGgtcataggacacgaaatcac	12	9	2	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MME-516	NM_007287	exon18	c.G1740T	p.M580I	CGGCATGGTCATA	.	116	65	144	0	.	0	0	0	0	0	T	154884770	G	T	154884770	3	4	31	1	0	0	0	0	1	0	0	0	9673	1348	47	3	1806	3	MME	3	154884770	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	738346	154884770	43137660	583	5957										
TIPARP	25976	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	156413771	156413771	+	Nonsense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tcaggagagagataaaaaggAgacccctcttccgctcctgt	10	11	2	3	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TIPARP-523	NM_015508	exon4	c.A1204T	p.R402X	AAAAGGAGACCCC	.	79	22	78	0	.	0	0	0	0	0	T	156413771	A	T	156413771	4	4	31	1	0	0	0	0	0	1	0	0	15961	296	11	5	1214	5	TIPARP	3	156413771	Nonsense_Mutation	SNP	A	TCGA-OR-A5KB-01A-11D-A30A-10	1529001	156413771	41608659	584	5958										
SHOX2	6474	hgsc.bcm.edu	37	chr3	157823581	157823582	+	In_Frame_Ins	INS	-	-	CACCTCCTC													0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gcctgctcctcctcctcctaINScacctcctccgcctcctccg					novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SHOX2-90	NM_001163678	exon1	c.233_234insGAGGAGGTG	p.V78delinsGGGV	CCTCCTACACCTC	.	84	44	18	0	.	0	0	0	0	0	CACCTCCTC	157823582	-	CACCTCCTC	157823581	7	5	31	1	0	1	1	0	0	0	0	0	14324	391	14	0	858	0	SHOX2	3	157823581	In_Frame_Ins	INS	-	TCGA-OR-A5KB-01A-11D-A30A-10	1409810	157823581	40198849	585	5959										
RARRES1	5918	hgsc.bcm.edu	37	chr3	158449965	158449965	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tgcacctcggccagcactcgTagcgcgctgggcgagccgga	15	15	0	0	rs6441223	byfrequency	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	RARRES1-514	NM_206963	exon1	c.A240G	p.L80L	CACTCGTAGCGCG	.	4	4	0	0	T|0.584;C|0.416	0	0	0	0	0	C	158449965	T	C	158449965	2	2	31	1	0	0	0	0	0	0	0	1	13090	1625	57	4		4	RARRES1	3	158449965	Silent	SNP	T	TCGA-OR-A5KB-01A-11D-A30A-10	626384	158449965	39572465	586	5960										
OTOL1	131149	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr3	161214847	161214847	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gtctttggcactgccactctCtctccctttgaaaacttcac	5	15	4	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_001080440	exon1	c.C252T	p.L84L	CACTCTCTCTCCC	.	179	17	145	0	.	0	0	0	0	0	T	161214847	C	T	161214847	2	4	31	1	0	0	0	0	0	0	0	1	11333	900	32	3		3	OTOL1	3	161214847	Silent	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	2764882	161214847	36807583	587	5961										
SI	6476	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	164786984	164786984	+	Splice_Site	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cctctctgtgcacaaattccCtgataaaatatttttaaagg	5	9	1	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SI-104	NM_001041	exon5	c.256-1G>T	.	AATTCCCTGATAA	.	112	17	112	0	.	0	0	0	0	0	A	164786984	C	A	164786984	5	1	31	1	0	0	0	0	0	0	1	0	14332	695	24	3	5408	3	SI	3	164786984	Splice_Site	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	3572137	164786984	33235446	588	5962										
BCHE	590	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	165547305	165547305	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tgacaaaaatcagcacttacCcatattttgcaaaatttgcc	4	10	1	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	BCHE-94	NM_000055	exon2	c.G1517T	p.G506V	ACTTACCCATATT	.	82	13	93	0	.	0	0	0	0	0	A	165547305	C	A	165547305	3	1	31	1	0	0	0	0	1	0	0	0	1359	637	22	3	303	3	BCHE	3	165547305	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	760321	165547305	32475125	589	5963										
SERPINI2	5276	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	167184843	167184843	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	atgaaaatgggaaactttacCatctgtttttctttctaccc	5	9	3	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SERPINI2-228	NM_001012303	exon4	c.G508C	p.G170R	CTTTACCATCTGT	.	36	4	28	0	.	0	0	0	0	0	G	167184843	C	G	167184843	3	3	31	1	0	0	0	0	1	0	0	0	14154	608	21	3	767	3	SERPINI2	3	167184843	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	1637538	167184843	30837587	590	5964										
WDR49	151790	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	167218046	167218046	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	agcaggtttattcacttcagGcagctcttccagggctccaa	9	12	3	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	WDR49-155	NM_178824	exon14	c.C1870T	p.P624S	CTTCAGGCAGCTC	.	50	29	59	0	.	0	0	0	0	0	A	167218046	G	A	167218046	3	1	31	1	0	0	0	0	1	0	0	0	17340	1203	42	3	231	3	WDR49	3	167218046	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	33203	167218046	30804384	591	5965										
SAMD7	344658	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	169644583	169644583	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	acactttgaggagagctgggGgcagagatgtcgtcgactca	15	8	1	3	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SAMD7-91	NM_182610	exon6	c.G533T	p.G178V	GCTGGGGGCAGAG	.	215	40	143	0	.	0	0	0	0	0	T	169644583	G	T	169644583	3	4	31	1	0	0	0	0	1	0	0	0	13859	1232	43	3	547	3	SAMD7	3	169644583	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	2426537	169644583	28377847	592	5966										
TNIK	23043	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	170928929	170928929	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	agttggtcatccatgcctggTgggttctttttgataaaagc	11	7	2	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TNIK-550	NM_001161562	exon4	c.A282T	p.P94P	GCCTGGTGGGTTC	.	60	26	79	0	.	0	0	0	0	0	A	170928929	T	A	170928929	2	1	31	1	0	0	0	0	0	0	0	1	16350	1683	59	5		5	TNIK	3	170928929	Silent	SNP	T	TCGA-OR-A5KB-01A-11D-A30A-10	1284346	170928929	27093501	593	5967										
KCNMB2	10242	hgsc.bcm.edu;bcgsc.ca	37	chr3	178543454	178543454	+	Frame_Shift_Del	DEL	C	C	-													0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gcactgaaggcaggagaggaCcgagctattctcctgggact					novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	KCNMB2-91	NM_005832	exon4	c.135delC	p.D45fs	AGAGGACCGAGCT	.	196	93	193	1	.	0	0	0	0	0	-	178543454	C	-	178543454	7	5	31	1	0	1	0	1	0	0	0	0	8096	506	18	0	141	0	KCNMB2	3	178543454	Frame_Shift_Del	DEL	C	TCGA-OR-A5KB-01A-11D-A30A-10	7614525	178543454	19478976	594	5968										
MFN1	55669	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	179076752	179076752	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ctgatggagataaagcctatCttatgacagaaggatcagat	10	6	2	5	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MFN1-155	NM_033540	exon4	c.C373T	p.L125F	GCCTATCTTATGA	.	60	33	72	1	.	0	0	0	0	0	T	179076752	C	T	179076752	3	4	31	1	0	0	0	0	1	0	0	0	9551	913	32	3	383	3	MFN1	3	179076752	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	533298	179076752	18945678	595	5969										
NDUFB5	4711	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	179332777	179332777	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	agctcctgttcgacacagtgGagaccatgggaaaagactat	11	9	0	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	NDUFB5-91	NM_002492	exon2	c.G143T	p.G48V	ACAGTGGAGACCA	.	46	11	48	0	.	0	0	0	0	0	T	179332777	G	T	179332777	3	4	31	1	0	0	0	0	1	0	0	0	10313	1174	41	3	149	3	NDUFB5	3	179332777	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	256025	179332777	18689653	596	5970										
CCDC39	339829	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	180366051	180366051	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ggaacgagttccttcaatttCtgataaaacagctttttctt	6	8	3	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CCDC39-72	NM_181426	exon10	c.G1264A	p.E422K	CAATTTCTGATAA	.	68	13	79	0	.	0	0	0	0	0	T	180366051	C	T	180366051	3	4	31	1	0	0	0	0	1	0	0	0	2817	922	32	3	1605	3	CCDC39	3	180366051	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	1033274	180366051	17656379	597	5971										
CCDC39	339829	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	180369189	180369189	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	aaattaaaactaaactttacCttcacatctttttcctcctc	0	12	2	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CCDC39-72	NM_181426	exon9	c.G1167A	p.K389K	CTTTACCTTCACA	.	40	17	32	0	.	0	0	0	0	0	T	180369189	C	T	180369189	2	4	31	1	0	0	0	0	0	0	0	1	2817	695	24	3		3	CCDC39	3	180369189	Silent	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	3138	180369189	17653241	598	5972										
SOX2	6657	broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr3	181430384	181430384	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	caagcgcctgggcgccgagtGgaaacttttgtcggagacgg	16	10	0	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SOX2-650	NM_003106	exon1	c.G236T	p.W79L	CCGAGTGGAAACT	.	312	38	265	1	.	0	0	0	0	0	T	181430384	G	T	181430384	3	4	31	1	0	0	0	0	1	0	0	0	14984	1357	47	3	238	3	SOX2	3	181430384	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	1061195	181430384	16592046	599	5973										
MCF2L2	23101	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	183013226	183013226	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cctcttgtgaaatatttcctGgacatcatccagcctctgca	6	13	3	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MCF2L2-293	NM_015078	exon13	c.C1537A	p.Q513K	TTTCCTGGACATC	.	159	29	146	0	.	0	0	0	0	0	T	183013226	G	T	183013226	3	4	31	1	0	0	0	0	1	0	0	0	9408	1357	47	3	1879	3	MCF2L2	3	183013226	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	1582842	183013226	15009204	600	5974										
ABCC5	10057	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	183679297	183679297	+	Splice_Site	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cgcaaacaccatcagatcttAcctcaactggcggtgtctct	7	14	4	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ABCC5-137	NM_005688	exon17	c.2379+2T>A	.	GATCTTACCTCAA	.	107	53	110	0	.	0	0	0	0	0	T	183679297	A	T	183679297	5	4	31	1	0	0	0	0	0	0	1	0	56	405	14	5	1992	5	ABCC5	3	183679297	Splice_Site	SNP	A	TCGA-OR-A5KB-01A-11D-A30A-10	666071	183679297	14343133	601	5975										
CHRD	8646	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	184105719	184105719	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tgctcaatggatccctacagGggggcactggagaggtgcac	15	10	1	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CHRD-93	NM_003741	exon20	c.G2452T	p.G818W	CTACAGGGGGGCA	.	231	30	181	1	.	0	0	0	0	0	T	184105719	G	T	184105719	3	4	31	1	0	0	0	0	1	0	0	0	3378	1246	43	3	2530	3	CHRD	3	184105719	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	426422	184105719	13916711	602	5976										
SENP2	59343	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	185337191	185337191	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tatcctaaattaaagtctggGggttaccaagcagtgaaacg	10	7	1	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SENP2-658	NM_021627	exon13	c.G1347T	p.G449G	GTCTGGGGGTTAC	.	89	54	82	0	.	0	0	0	0	0	T	185337191	G	T	185337191	2	4	31	1	0	0	0	0	0	0	0	1	14082	1219	43	3		3	SENP2	3	185337191	Silent	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	1231472	185337191	12685239	603	5977										
FETUB	26998	hgsc.bcm.edu	37	chr3	186358823	186358823	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ctaccccttcccacagggtgGcctgggatctctgttctatc	9	15	2	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FETUB-92	NM_014375	exon2	c.G230T	p.G77V	AGGGTGGCCTGGG	.	68	4	57	0	.	0	0	0	0	0	T	186358823	G	T	186358823	3	4	31	1	0	0	0	0	1	0	0	0	5840	1203	42	3	236	3	FETUB	3	186358823	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	1021632	186358823	11663607	604	5978										
HRG	3273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	186389494	186389494	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gagcgctacagaaaacaagcCaacaaagcccttgagaagta	9	10	0	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	HRG-91	NM_000412	exon4	c.C474A	p.A158A	ACAAGCCAACAAA	.	263	130	219	1	.	0	0	0	0	0	A	186389494	C	A	186389494	2	1	31	1	0	0	0	0	0	0	0	1	7375	581	21	3		3	HRG	3	186389494	Silent	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	30671	186389494	11632936	605	5979										
CCDC50	152137	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	191107354	191107354	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tttacaaaccagcagagttcCacacggcatttctcaaaatc	5	12	1	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CCDC50-90	NM_178335	exon11	c.C1392T	p.S464S	GAGTTCCACACGG	.	138	52	127	0	.	0	0	0	0	0	T	191107354	C	T	191107354	2	4	31	1	0	0	0	0	0	0	0	1	2826	581	21	3		3	CCDC50	3	191107354	Silent	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	4717860	191107354	6915076	606	5980										
OPA1	4976	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	193376763	193376763	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tttattttatggaagaggctCtgcaggctcgtctcaaggat	11	7	2	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OPA1-68	NM_130837	exon24	c.C2419T	p.L807L	GAGGCTCTGCAGG	.	108	20	89	0	.	0	0	0	0	0	T	193376763	C	T	193376763	2	4	31	1	0	0	0	0	0	0	0	1	10900	912	32	3		3	OPA1	3	193376763	Silent	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	2269409	193376763	4645667	607	5981										
LRRC15	131578	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	194080771	194080771	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gttagcccgttgaaggcaccCggggagatgaagctgatctg	15	9	1	4	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	LRRC15-71	NM_001135057	exon3	c.G1020T	p.P340P	GGCACCCGGGGAG	.	183	28	158	0	.	0	0	0	0	0	A	194080771	C	A	194080771	2	1	31	1	0	0	0	0	0	0	0	1	8997	639	23	2		2	LRRC15	3	194080771	Silent	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	704008	194080771	3941659	608	5982										
ACAP2	23527	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	195022705	195022705	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gcctacccaccggtgaattcCggagcactcgatacacaagg	10	14	0	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ACAP2-136	NM_012287	exon14	c.G1315T	p.G439X	GAATTCCGGAGCA	.	213	39	180	1	.	0	0	0	0	0	A	195022705	C	A	195022705	4	1	31	1	0	0	0	0	0	1	0	0	119	661	23	2	1061	2	ACAP2	3	195022705	Nonsense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	941934	195022705	2999725	609	5983										
PIGZ	80235	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	196674222	196674222	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	taccacaaagaggcggcagaGccatggcccaccagccactt	10	15	0	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PIGZ-93	NM_025163	exon3	c.C1546G	p.L516V	GGCAGAGCCATGG	.	114	56	90	1	.	0	0	0	0	0	C	196674222	G	C	196674222	3	2	31	1	0	0	0	0	1	0	0	0	11934	971	34	3	197	3	PIGZ	3	196674222	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	1651517	196674222	1348208	610	5984										
KIAA0226	9711	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	197402298	197402298	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tgcacctgccctcaccttcaCaggtccggcacttatggagc	9	16	2	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	KIAA0226-22	NM_014687	exon19	c.G2735T	p.C912F	CCTTCACAGGTCC	.	65	31	61	0	.	0	0	0	0	0	A	197402298	C	A	197402298	3	1	31	1	0	0	0	0	1	0	0	0	8183	478	17	3	191	3	KIAA0226	3	197402298	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	728076	197402298	620132	611	5985										
KIAA0226	9711	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	197420601	197420601	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cttaccttggatttcaaattCatcaacctcatcagcagagc	5	12	5	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	KIAA0226-22	NM_014687	exon11	c.G1771A	p.E591K	CAAATTCATCAAC	.	86	20	85	0	.	0	0	0	0	0	T	197420601	C	T	197420601	3	4	31	1	0	0	0	0	1	0	0	0	8183	835	29	3	1187	3	KIAA0226	3	197420601	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	18303	197420601	601829	612	5986										
CRIPAK	285464	ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	1388416	1388416	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ccgcctgctcacacatgtcgAtgcggagtgcccgcctgctc	11	17	1	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CRIPAK-90	NM_175918	exon1	c.A117G	p.R39R	ATGTCGATGCGGA	.	131	38	117	1	.	0	0	0	0	0	G	1388416	A	G	1388416	2	3	31	1	0	0	0	0	0	0	0	1	3883	320	12	4		4	CRIPAK	4	1388416	Silent	SNP	A	TCGA-OR-A5KB-01A-11D-A30A-10		1388416	189765860	613	5987										
MSX1	4487	hgsc.bcm.edu;broad.mit.edu	37	chr4	4862086	4862086	+	Frame_Shift_Del	DEL	C	C	-													0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	agagcccccgcttctccccgCcgccggccagtgagtagcca					novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MSX1-90	NM_002448	exon1	c.460delC	p.P154fs	TCCCCGCCGCCGG	.	25	15	6	0	.	0	0	0	0	0	-	4862086	C	-	4862086	7	5	31	1	0	1	0	1	0	0	0	0	9923	739	26	0	462	0	MSX1	4	4862086	Frame_Shift_Del	DEL	C	TCGA-OR-A5KB-01A-11D-A30A-10	3473670	4862086	186292190	614	5988	57	3								
MSX1	4487	hgsc.bcm.edu	37	chr4	4862087	4862088	+	Frame_Shift_Del	DEL	CG	CG	-													0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gagcccccgcttctccccgcCgccggccagtgagtagccag					novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	CG	CG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MSX1-90	NM_002448	exon1	c.461_462del	p.154_154del	CCCCGCCGCCGGC	.	25	0	6	0	.	0	0	0	0	0	-	4862088	CG	-	4862087	7	5	31	1	0	1	0	1	0	0	0	0	9923	652	23	0	463	0	MSX1	4	4862087	Frame_Shift_Del	DEL	CG	TCGA-OR-A5KB-01A-11D-A30A-10	1	4862087	186292189	615	5989	57	3								
MSX1	4487	hgsc.bcm.edu	37	chr4	4862088	4862088	+	Silent	SNP	G	G	A													0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	agcccccgcttctccccgccGccggccagtgagtagccaga					novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MSX1-90	NM_002448	exon1	c.G462A	p.P154P	CCCGCCGCCGGCC	.	24	14	6	0	.	0	0	0	0	0	A	4862088	G	A	4862088	2	1	31	1	0	0	0	0	0	0	0	1	9923	1074	38	1		1	MSX1	4	4862088	Silent	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	1	4862088	186292188	616	5990	57	3								
EVC	2121	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	5749913	5749913	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cagatggcaaatatccagcaCtttcttgtggaccagtttaa	8	9	1	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	EVC-92	NM_153717	exon8	c.C978G	p.H326Q	CCAGCACTTTCTT	.	98	51	103	0	.	0	0	0	0	0	G	5749913	C	G	5749913	3	3	31	1	0	0	0	0	1	0	0	0	5298	564	20	3	1008	3	EVC	4	5749913	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	887825	5749913	185404363	617	5991										
ZNF518B	85460	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	10446969	10446969	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gctggtgcaacaactgtcaaTggcatacctggctgaacagg	12	10	1	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ZNF518B-72	NM_053042	exon3	c.A984T	p.P328P	TGTCAATGGCATA	.	211	44	244	1	.	0	0	0	0	0	A	10446969	T	A	10446969	2	1	31	1	0	0	0	0	0	0	0	1	18000	1451	51	5		5	ZNF518B	4	10446969	Silent	SNP	T	TCGA-OR-A5KB-01A-11D-A30A-10	4697056	10446969	180707307	618	5992										
CC2D2A	57545	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	15512967	15512967	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	agaggaaaaaccaaaagcaaGacatagagcgggaactaatc	10	7	0	3	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CC2D2A-25	NM_001080522	exon9	c.G638C	p.R213T	AAGCAAGACATAG	.	112	28	97	0	.	0	0	0	0	0	C	15512967	G	C	15512967	3	2	31	1	0	0	0	0	1	0	0	0	2734	942	33	3	867	3	CC2D2A	4	15512967	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	5065998	15512967	175641309	619	5993										
BST1	683	broad.mit.edu	37	chr4	15717413	15717413	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ggttatgcatgaaattggggGacccaatgtgtaagttatgg	14	4	0	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	BST1-90	NM_004334	exon6	c.G695T	p.G232V	TTGGGGGACCCAA	.	62	21	66	2	.	0	0	0	0	0	T	15717413	G	T	15717413	3	4	31	1	0	0	0	0	1	0	0	0	1536	1174	41	3	717	3	BST1	4	15717413	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	204446	15717413	175436863	620	5994										
CLRN2	645104	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	17524572	17524572	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ctggccttggccctggctctGgtcagcatgggctttgccat	13	13	2	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CLRN2-68	NM_001079827	exon2	c.G339T	p.L113L	GGCTCTGGTCAGC	.	99	26	103	1	.	0	0	0	0	0	T	17524572	G	T	17524572	2	4	31	1	0	0	0	0	0	0	0	1	3564	1335	47	3		3	CLRN2	4	17524572	Silent	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	1807159	17524572	173629704	621	5995										
DCAF16	54876	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	17805608	17805608	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	aaggcacttaacctgccaggCaagactctcaagaggcgata	10	11	1	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DCAF16-91	NM_017741	exon3	c.G157T	p.A53S	GCCAGGCAAGACT	.	77	8	101	0	.	0	0	0	0	0	A	17805608	C	A	17805608	3	1	31	1	0	0	0	0	1	0	0	0	4274	710	25	3	497	3	DCAF16	4	17805608	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	281036	17805608	173348668	622	5996										
SLIT2	9353	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	20530599	20530599	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	agattatcgatcaaaattaaGtggagactgctttgcggatc	10	6	1	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SLIT2-521	NM_004787	exon16	c.G1490T	p.S497I	AATTAAGTGGAGA	.	42	5	61	0	.	0	0	0	0	0	T	20530599	G	T	20530599	3	4	31	1	0	0	0	0	1	0	0	0	14775	1029	36	3	1552	3	SLIT2	4	20530599	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	2724991	20530599	170623677	623	5997										
SLIT2	9353	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	20543086	20543086	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tggctcttagaaacctcttgGccaatccttttaactgtaac	6	11	2	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SLIT2-521	NM_004787	exon20	c.G1987C	p.A663P	CTCTTGGCCAATC	.	128	58	142	0	.	0	0	0	0	0	C	20543086	G	C	20543086	3	2	31	1	0	0	0	0	1	0	0	0	14775	1203	42	3	2065	3	SLIT2	4	20543086	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	12487	20543086	170611190	624	5998										
SLIT2	9353	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	20550717	20550717	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gtctgagatgtattcctcctCgcacctttgatggattaaag	9	9	1	2	rs143383158	alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SLIT2-521	NM_004787	exon24	c.C2455G	p.R819G	CCTCCTCGCACCT	.	79	31	56	0	C|1.000;T|0.000	0	0	0	0	0	G	20550717	C	G	20550717	3	3	31	1	0	0	0	0	1	0	0	0	14775	884	31	2	2549	2	SLIT2	4	20550717	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	7631	20550717	170603559	625	5999										
PACRGL	133015	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	20711305	20711305	+	Splice_Site	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tcactaacttttatattttaGattggtacatggttcagtaa	6	5	2	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PACRGL-68	NM_001258345	exon5	c.276-1G>C	.	ATTTTAGATTGGT	.	28	15	46	0	.	0	0	0	0	0	C	20711305	G	C	20711305	5	2	31	1	0	0	0	0	0	0	1	0	11400	956	33	3	289	3	PACRGL	4	20711305	Splice_Site	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	160588	20711305	170442971	626	6000										
PPARGC1A	10891	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	23815899	23815899	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ttgtctagagtcttggagctCctgtgatatattaatgagta	10	5	2	3	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PPARGC1A-230	NM_013261	exon8	c.G1207C	p.E403Q	GGAGCTCCTGTGA	.	45	19	40	0	.	0	0	0	0	0	G	23815899	C	G	23815899	3	3	31	1	0	0	0	0	1	0	0	0	12329	864	30	3	1213	3	PPARGC1A	4	23815899	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	3104594	23815899	167338377	627	6001										
STIM2	57620	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	26997095	26997095	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tttagagacaacaatgtcaaAggaacgacacttcccaggtg	9	9	1	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	STIM2-91	NM_001169118	exon4	c.A492T	p.K164N	TGTCAAAGGAACG	.	57	20	71	0	.	0	0	0	0	0	T	26997095	A	T	26997095	3	4	31	1	0	0	0	0	1	0	0	0	15321	69	3	5	506	5	STIM2	4	26997095	Missense_Mutation	SNP	A	TCGA-OR-A5KB-01A-11D-A30A-10	3181196	26997095	164157181	628	6002										
PCDH7	5099	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	30724205	30724205	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ctgcgcttcacggtcatggcCcgcgaccgcgggcagccccc	13	19	2	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PCDH7-229	NM_032457	exon1	c.C1161A	p.A387A	CATGGCCCGCGAC	.	378	166	226	1	.	0	0	0	0	0	A	30724205	C	A	30724205	2	1	31	1	0	0	0	0	0	0	0	1	11545	610	22	3		3	PCDH7	4	30724205	Silent	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	3727110	30724205	160430071	629	6003										
PCDH7	5099	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	30725203	30725203	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ggctgtggatgggggagatcCtcccagatctgccacagcta	14	11	1	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PCDH7-229	NM_032457	exon1	c.C2159A	p.P720H	GAGATCCTCCCAG	.	167	42	200	0	.	0	0	0	0	0	A	30725203	C	A	30725203	3	1	31	1	0	0	0	0	1	0	0	0	11545	681	24	3	2161	3	PCDH7	4	30725203	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	998	30725203	160429073	630	6004										
PCDH7	5099	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	30726108	30726108	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gaaaaaaacaccaggccgtaCaagatctaccaccagccaac	6	14	1	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PCDH7-229	NM_032457	exon1	c.C3064A	p.Q1022K	GCCGTACAAGATC	.	122	41	145	0	.	0	0	0	0	0	A	30726108	C	A	30726108	3	1	31	1	0	0	0	0	1	0	0	0	11545	479	17	3	3066	3	PCDH7	4	30726108	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	905	30726108	160428168	631	6005										
ARAP2	116984	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	36214095	36214095	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ccctgggtcaaaaattcattCtttatagatcgcttctatta	5	9	4	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ARAP2-93	NM_015230	exon5	c.G1056T	p.K352N	TTCATTCTTTATA	.	28	9	51	0	.	0	0	0	0	0	A	36214095	C	A	36214095	3	1	31	1	0	0	0	0	1	0	0	0	839	912	32	3	4174	3	ARAP2	4	36214095	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	5487987	36214095	154940181	632	6006										
CHRNA9	55584	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	40337897	40337897	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	agttgtttaatgacctttttGaagattattctaatgctctt	6	5	2	3	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CHRNA9-96	NM_017581	exon2	c.G118C	p.E40Q	CTTTTTGAAGATT	.	162	41	167	0	.	0	0	0	0	0	C	40337897	G	C	40337897	3	2	31	1	0	0	0	0	1	0	0	0	3395	1291	45	3	124	3	CHRNA9	4	40337897	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	4123802	40337897	150816379	633	6007										
DCAF4L1	285429	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr4	41984385	41984385	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tggtcctgtgcgtggtccctCaacacccgggcatatcactg	11	14	2	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DCAF4L1-23	NM_001029955	exon1	c.C576G	p.L192L	GTCCCTCAACACC	.	209	19	270	0	.	0	0	0	0	0	G	41984385	C	G	41984385	2	3	31	1	0	0	0	0	0	0	0	1	4277	813	29	3		3	DCAF4L1	4	41984385	Silent	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	1646488	41984385	149169891	634	6008										
GRXCR1	389207	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	42895306	42895306	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gcttaaaagggagatgaagcCagaaagtgacaggccacgga	14	7	0	4	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GRXCR1-23	NM_001080476	exon1	c.C23A	p.P8Q	TGAAGCCAGAAAG	.	242	43	254	0	.	0	0	0	0	0	A	42895306	C	A	42895306	3	1	31	1	0	0	0	0	1	0	0	0	6833	594	21	3	25	3	GRXCR1	4	42895306	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	910921	42895306	148258970	635	6009										
KCTD8	386617	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	44177094	44177094	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gttaggttggtgagctgttgCctgctgggcactggatgggt	18	6	0	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	KCTD8-92	NM_198353	exon2	c.G1135T	p.A379S	CTGTTGCCTGCTG	.	108	32	121	0	.	0	0	0	0	0	A	44177094	C	A	44177094	3	1	31	1	0	0	0	0	1	0	0	0	8136	739	26	3	290	3	KCTD8	4	44177094	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	1281788	44177094	146977182	636	6010										
GABRG1	2565	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	46060307	46060307	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gaaagaacaactgtcagaatGcatggaatgtaggtctgaat	11	5	2	3	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GABRG1-92	NM_173536	exon7	c.C843A	p.C281X	CAGAATGCATGGA	.	177	60	189	0	.	0	0	0	0	0	T	46060307	G	T	46060307	4	4	31	1	0	0	0	0	0	1	0	0	6190	1311	46	3	566	3	GABRG1	4	46060307	Nonsense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	1883213	46060307	145093969	637	6011										
SGCB	6443	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	52895076	52895076	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ctgagctttgttgtcccttgCtgaaaaacaatcttcaaaaa	6	9	2	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SGCB-90	NM_000232	exon4	c.G441T	p.Q147H	CCCTTGCTGAAAA	.	45	15	42	0	.	0	0	0	0	0	A	52895076	C	A	52895076	3	1	31	1	0	0	0	0	1	0	0	0	14235	796	28	3	527	3	SGCB	4	52895076	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	6834769	52895076	138259200	638	6012										
SPATA18	132671	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	52944930	52944930	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	catgtagcaaaaatggcattCagacacttcaagatccatgt	7	9	2	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SPATA18-72	NM_145263	exon8	c.C1050A	p.F350L	GGCATTCAGACAC	.	105	27	101	0	.	0	0	0	0	0	A	52944930	C	A	52944930	3	1	31	1	0	0	0	0	1	0	0	0	15040	825	29	3	1080	3	SPATA18	4	52944930	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	49854	52944930	138209346	639	6013										
TMEM165	55858	hgsc.bcm.edu	37	chr4	56262374	56262374	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gggatggcggccgcggctccAgggaacggccgcgcatcggc	19	14	0	0	rs1128141		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TMEM165-514	NM_018475	exon1	c.A18G	p.P6P	GGCTCCAGGGAAC	.	6	6	0	0	T|0.293;G|0.003	0	0	0	0	0	G	56262374	A	G	56262374	2	3	31	1	0	0	0	0	0	0	0	1	16117	175	7	4		4	TMEM165	4	56262374	Silent	SNP	A	TCGA-OR-A5KB-01A-11D-A30A-10	3317444	56262374	134891902	640	6014										
NMU	10874	hgsc.bcm.edu	37	chr4	56502304	56502304	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gcagcagcaggagcggggacGccgcggccacctgtccggcg	18	15	0	0	rs35771241		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	NMU-650	NM_006681	exon1	c.C56A	p.A19E	GGGGACGCCGCGG	.	24	18	0	0	G|0.970;T|0.030	0	0	0	0	0	T	56502304	G	T	56502304	3	4	31	1	0	0	0	0	1	0	0	0	10534	1087	38	2	504	2	NMU	4	56502304	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	239930	56502304	134651972	641	6015										
EXOC1	55763	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	56763013	56763013	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cttcaaaaatgctgagcgtcGtggagacctggataaagcat	11	8	1	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	EXOC1-950	NM_018261	exon16	c.G2084T	p.R695L	AGCGTCGTGGAGA	.	79	29	101	0	.	0	0	0	0	0	T	56763013	G	T	56763013	3	4	31	1	0	0	0	0	1	0	0	0	5314	1145	40	2	2142	2	EXOC1	4	56763013	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	260709	56763013	134391263	642	6016										
POLR2B	5431	hgsc.bcm.edu;bcgsc.ca	37	chr4	57889607	57889609	+	In_Frame_Del	DEL	ATG	ATG	-													0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	aacagtcaccttgcctgaaaAtgaagatgaattggagagca					novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	ATG	ATG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	POLR2B-92	NM_000938	exon19	c.2627_2629del	p.876_877del	CTGAAAATGAAGA	.	146	63	155	0	.	0	0	0	0	0	-	57889609	ATG	-	57889607	7	5	31	1	0	1	0	1	0	0	0	0	12244	101	4	0	2701	0	POLR2B	4	57889607	In_Frame_Del	DEL	ATG	TCGA-OR-A5KB-01A-11D-A30A-10	1126594	57889607	133264669	643	6017										
LPHN3	23284	ucsc.edu;bcgsc.ca	37	chr4	62910175	62910175	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cttttcccccacccagagccGaatccgtagaatgtggaatg	9	13	0	2	rs143689172	by1000genomes;alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	LPHN3-508	NM_015236	exon22	c.G3518T	p.R1173L	AGAGCCGAATCCG	.	332	130	451	3	G|0.999;A|0.000	0	0	0	0	0	T	62910175	G	T	62910175	3	4	31	1	0	0	0	0	1	0	0	0	8944	1058	37	2	3604	2	LPHN3	4	62910175	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	5020568	62910175	128244101	644	6018										
TECRL	253017	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	65180421	65180421	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ttttccatcatatatacatgGgatcctcaaataaaagagga	6	7	2	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TECRL-90	NM_001010874	exon5	c.C496A	p.P166T	TACATGGGATCCT	.	302	124	365	1	.	0	0	0	0	0	T	65180421	G	T	65180421	3	4	31	1	0	0	0	0	1	0	0	0	15783	1232	43	3	627	3	TECRL	4	65180421	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	2270246	65180421	125973855	645	6019										
EPHA5	2044	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	66201818	66201818	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ccatggggcttggcagacgaTagccttcctctaccgcttta	10	13	1	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	EPHA5-1430	NM_004439	exon16	c.A2684G	p.Y895C	AGACGATAGCCTT	.	105	42	133	1	.	0	0	0	0	0	C	66201818	T	C	66201818	3	2	31	1	0	0	0	0	1	0	0	0	5183	1406	49	4	441	4	EPHA5	4	66201818	Missense_Mutation	SNP	T	TCGA-OR-A5KB-01A-11D-A30A-10	1021397	66201818	124952458	646	6020										
EPHA5	2044	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	66467370	66467370	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	aactcttaccttgacaggtgCcatttttctcttcatatcct	4	12	3	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	EPHA5-1430	NM_004439	exon3	c.G899T	p.G300V	CAGGTGCCATTTT	.	67	30	60	0	.	0	0	0	0	0	A	66467370	C	A	66467370	3	1	31	1	0	0	0	0	1	0	0	0	5183	739	26	3	2278	3	EPHA5	4	66467370	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	265552	66467370	124686906	647	6021										
UBA6	55236	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	68492095	68492095	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tacttttggtggcttcattaGataaaatagccttttctagt	7	6	2	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	UBA6-90	NM_018227	exon28	c.C2501T	p.S834F	TCATTAGATAAAA	.	29	6	32	0	.	0	0	0	0	0	A	68492095	G	A	68492095	3	1	31	1	0	0	0	0	1	0	0	0	16870	942	33	3	681	3	UBA6	4	68492095	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	2024725	68492095	122662181	648	6022										
TMPRSS11E	28983	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	69343119	69343119	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tgccagatggactgcttcctTtggagtaacaataaaacctt	8	9	0	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TMPRSS11E-70	NM_014058	exon8	c.T740A	p.F247Y	CTTCCTTTGGAGT	.	199	80	193	0	.	0	0	0	0	0	A	69343119	T	A	69343119	3	1	31	1	0	0	0	0	1	0	0	0	16279	1841	64	5	770	5	TMPRSS11E	4	69343119	Missense_Mutation	SNP	T	TCGA-OR-A5KB-01A-11D-A30A-10	851024	69343119	121811157	649	6023										
UGT2A3	79799	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	69795545	69795545	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	aaagatctattccctcttttCtatctttctagttttattaa	2	8	5	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	UGT2A3-92	NM_024743	exon6	c.G1570C	p.E524Q	TCTTTTCTATCTT	.	57	25	87	0	.	0	0	0	0	0	G	69795545	C	G	69795545	3	3	31	1	0	0	0	0	1	0	0	0	16993	922	32	3	17	3	UGT2A3	4	69795545	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	452426	69795545	121358731	650	6024										
HTN1	3346	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	70920167	70920167	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gggtatagaagaaaattccaTgtaagtgttcttctgataat	9	4	2	3	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	HTN1-91	NM_002159	exon4	c.T102C	p.H34H	ATTCCATGTAAGT	.	108	18	142	0	.	0	0	0	0	0	C	70920167	T	C	70920167	2	2	31	1	0	0	0	0	0	0	0	1	7455	1478	51	4		4	HTN1	4	70920167	Silent	SNP	T	TCGA-OR-A5KB-01A-11D-A30A-10	1124622	70920167	120234109	651	6025										
MUC7	4589	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	71346966	71346966	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cacaagacaccacagctgccCcacccacaccttctgcaact	4	20	1	1	rs41413151	byfrequency	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MUC7-93	NM_001145007	exon4	c.C505A	p.P169T	GCTGCCCCACCCA	.	254	126	276	1	C|0.987;A|0.013	0	0	0	0	0	A	71346966	C	A	71346966	3	1	31	1	0	0	0	0	1	0	0	0	10009	623	22	3	511	3	MUC7	4	71346966	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	426799	71346966	119807310	652	6026										
GC	2638	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	72622606	72622606	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tctttgtggataaattgtcaCagagttttactgtgtgttca	9	5	3	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GC-93	NM_001204307	exon9	c.G914A	p.C305Y	TTGTCACAGAGTT	.	34	16	40	0	.	0	0	0	0	0	T	72622606	C	T	72622606	3	4	31	1	0	0	0	0	1	0	0	0	6302	478	17	3	587	3	GC	4	72622606	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	1275640	72622606	118531670	653	6027										
CCDC158	339965	hgsc.bcm.edu;bcgsc.ca	37	chr4	77244563	77244563	+	Splice_Site	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tattggcggagactgtgaatCtattagaaaattgcttagat	10	4	1	4	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CCDC158-96	NM_001042784	exon24	c.3158-1G>T	.	GTGAATCTATTAG	.	40	9	47	0	.	0	0	0	0	0	A	77244563	C	A	77244563	5	1	31	1	0	0	0	0	0	0	1	0	2796	927	32	3	192	3	CCDC158	4	77244563	Splice_Site	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	4621957	77244563	113909713	654	6028										
CNOT6L	246175	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr4	78641630	78641630	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ccattgacaagaggcaggagTggagggtggagttcaagttg	17	5	1	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CNOT6L-67	NM_144571	exon12	c.A1623G	p.P541P	CAGGAGTGGAGGG	.	754	181	816	1	.	0	0	0	0	0	C	78641630	T	C	78641630	2	2	31	1	0	0	0	0	0	0	0	1	3629	1683	59	4		4	CNOT6L	4	78641630	Silent	SNP	T	TCGA-OR-A5KB-01A-11D-A30A-10	1397067	78641630	112512646	655	6029										
FGF5	2250	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	81207738	81207738	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tcctgaaaagaaaaagccacCtagccctatcaagccaaaga	6	12	1	3	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FGF5-1135	NM_004464	exon3	c.C719A	p.P240H	AGCCACCTAGCCC	.	102	20	106	0	.	0	0	0	0	0	A	81207738	C	A	81207738	3	1	31	1	0	0	0	0	1	0	0	0	5874	681	24	3	729	3	FGF5	4	81207738	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	2566108	81207738	109946538	656	6030										
PRKG2	5593	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	82090866	82090866	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tctagcttgggctgtcctccTcattatattctggaatacct	7	11	3	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PRKG2-524	NM_006259	exon4	c.A799T	p.R267W	TCCTCCTCATTAT	.	52	12	43	0	.	0	0	0	0	0	A	82090866	T	A	82090866	3	1	31	1	0	0	0	0	1	0	0	0	12555	1550	54	5	1549	5	PRKG2	4	82090866	Missense_Mutation	SNP	T	TCGA-OR-A5KB-01A-11D-A30A-10	883128	82090866	109063410	657	6031										
PRKG2	5593	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	82125944	82125944	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gggcttcctccctgcatatgCaccacatcctgcagcttgtt	8	15	0	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PRKG2-524	NM_006259	exon1	c.G258T	p.V86V	CATATGCACCACA	.	137	55	143	0	.	0	0	0	0	0	A	82125944	C	A	82125944	2	1	31	1	0	0	0	0	0	0	0	1	12555	697	25	3		3	PRKG2	4	82125944	Silent	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	35078	82125944	109028332	658	6032										
SEC31A	22872	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	83785613	83785613	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ttgtgactgcacagcctgctGaagttggtctgatcggctga	13	9	1	4	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SEC31A-268	NM_001077206	exon11	c.C1336T	p.Q446X	CCTGCTGAAGTTG	.	121	59	109	2	.	0	0	0	0	0	A	83785613	G	A	83785613	4	1	31	1	0	0	0	0	0	1	0	0	14033	1299	45	3	2394	3	SEC31A	4	83785613	Nonsense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	1659669	83785613	107368663	659	6033										
WDFY3	23001	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	85626662	85626662	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ttgggattagtaagatccacCtcctaaaatacaaaatgtaa	6	7	0	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	WDFY3-93	NM_014991	exon54	c.G8220T	p.E2740D	ATCCACCTCCTAA	.	103	40	108	0	.	0	0	0	0	0	A	85626662	C	A	85626662	3	1	31	1	0	0	0	0	1	0	0	0	17308	680	24	3	2420	3	WDFY3	4	85626662	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	1841049	85626662	105527614	660	6034										
WDFY3	23001	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr4	85722990	85722991	+	Frame_Shift_Ins	INS	-	-	A													0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	agggattgtaaaatatttgcINScacggcaagttgaagatcca					novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	WDFY3-93	NM_014991	exon17	c.2635_2636insT	p.A879fs	TATTTGCCACGGC	.	114	26	128	0	.	0	0	0	0	0	A	85722991	-	A	85722990	7	5	31	1	0	1	1	0	0	0	0	0	17308	739	26	0	8153	0	WDFY3	4	85722990	Frame_Shift_Ins	INS	-	TCGA-OR-A5KB-01A-11D-A30A-10	96328	85722990	105431286	661	6035										
SLC10A6	345274	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	87744863	87744863	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	attcacatgaagtgatgtggCcaactggctcgagagccctg	12	10	1	3	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SLC10A6-22	NM_197965	exon6	c.G1112T	p.G371V	ATGTGGCCAACTG	.	124	27	132	1	.	0	0	0	0	0	A	87744863	C	A	87744863	3	1	31	1	0	0	0	0	1	0	0	0	14413	739	26	3	25	3	SLC10A6	4	87744863	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	2021873	87744863	103409413	662	6036										
SLC10A6	345274	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	87769948	87769948	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	atgttagagatggtgcccccCgggcagcagcccatgatgag	14	11	0	3	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SLC10A6-22	NM_197965	exon1	c.G321T	p.P107P	GCCCCCCGGGCAG	.	176	82	145	0	.	0	0	0	0	0	A	87769948	C	A	87769948	2	1	31	1	0	0	0	0	0	0	0	1	14413	639	23	2		2	SLC10A6	4	87769948	Silent	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	25085	87769948	103384328	663	6037										
HERC3	8916	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	89607931	89607931	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ccccggggaggatgtggaggAgactttctgcctcaacttca	13	11	3	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	HERC3-660	NM_014606	exon22	c.A2552C	p.E851A	TGGAGGAGACTTT	.	112	34	115	0	.	0	0	0	0	0	C	89607931	A	C	89607931	3	2	31	1	0	0	0	0	1	0	0	0	7080	304	11	5	2630	5	HERC3	4	89607931	Missense_Mutation	SNP	A	TCGA-OR-A5KB-01A-11D-A30A-10	1837983	89607931	101546345	664	6038										
MMRN1	22915	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	90857026	90857026	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	agatggcctcaataagacaaTgactattataaataatgcta	6	6	1	3	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MMRN1-94	NM_007351	exon6	c.T2195G	p.M732R	AGACAATGACTAT	.	130	35	184	0	.	0	0	0	0	0	G	90857026	T	G	90857026	3	3	31	1	0	0	0	0	1	0	0	0	9698	1464	51	5	2217	5	MMRN1	4	90857026	Missense_Mutation	SNP	T	TCGA-OR-A5KB-01A-11D-A30A-10	1249095	90857026	100297250	665	6039										
MMRN1	22915	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	90857213	90857213	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	actttggtcaatgacaatcaGagatataactttgttttgca	7	6	2	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MMRN1-94	NM_007351	exon6	c.G2382T	p.Q794H	CAATCAGAGATAT	.	50	18	69	0	.	0	0	0	0	0	T	90857213	G	T	90857213	3	4	31	1	0	0	0	0	1	0	0	0	9698	933	33	3	2404	3	MMRN1	4	90857213	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	187	90857213	100297063	666	6040										
ATOH1	474	hgsc.bcm.edu;bcgsc.ca	37	chr4	94750174	94750174	+	Frame_Shift_Del	DEL	C	C	-													0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	atcatctcccgcaaccgccgCcgccgccgcagccacctgca					novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ATOH1-90	NM_005172	exon1	c.97delC	p.P33fs	CCGCCGCCGCCGC	.	427	110	300	1	.	0	0	0	0	0	-	94750174	C	-	94750174	7	5	31	1	0	1	0	1	0	0	0	0	1113	739	26	0	99	0	ATOH1	4	94750174	Frame_Shift_Del	DEL	C	TCGA-OR-A5KB-01A-11D-A30A-10	3892961	94750174	96404102	667	6041										
PDLIM5	10611	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	95497186	95497186	+	Splice_Site	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gacagtaaacagcaaaatggGtaggtggctaaggtgctttc	13	6	0	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PDLIM5-117	NM_006457	exon5	c.710+1G>T	.	AAATGGGTAGGTG	.	172	59	179	0	.	0	0	0	0	0	T	95497186	G	T	95497186	5	4	31	1	0	0	0	0	0	0	1	0	11712	1275	44	3	725	3	PDLIM5	4	95497186	Splice_Site	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	747012	95497186	95657090	668	6042										
BMPR1B	658	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	96075737	96075737	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	aaactcatgacagaatgctgGgctcacaatcctgcatcaag	8	11	3	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	BMPR1B-1378	NM_001256793	exon11	c.G1512T	p.W504C	ATGCTGGGCTCAC	.	168	44	140	0	.	0	0	0	0	0	T	96075737	G	T	96075737	3	4	31	1	0	0	0	0	1	0	0	0	1471	1241	43	3	1460	3	BMPR1B	4	96075737	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	578551	96075737	95078539	669	6043										
ADH1B	125	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	100235236	100235236	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gcacaggtagagcctggggtGacctgtgttttcagaaaatg	14	7	1	3	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ADH1B-136	NM_000668	exon6	c.C570T	p.V190V	TGGGGTGACCTGT	.	155	72	186	0	.	0	0	0	0	0	A	100235236	G	A	100235236	2	1	31	1	0	0	0	0	0	0	0	1	308	1277	45	3		3	ADH1B	4	100235236	Silent	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	4159499	100235236	90919040	670	6044										
ADH1B	125	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	100237112	100237112	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	aatccacagccaatgaggcaGactttctccaggggcgaggc	12	12	1	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ADH1B-136	NM_000668	exon5	c.C510A	p.V170V	GAGGCAGACTTTC	.	262	72	276	0	.	0	0	0	0	0	T	100237112	G	T	100237112	2	4	31	1	0	0	0	0	0	0	0	1	308	929	33	3		3	ADH1B	4	100237112	Silent	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	1876	100237112	90917164	671	6045										
NFKB1	4790	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	103537720	103537720	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	caaaatgccccatgattatgGgcaggaaggacctctagaag	11	9	1	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	NFKB1-912	NM_003998	exon24	c.G2879T	p.G960V	ATTATGGGCAGGA	.	86	52	97	0	.	0	0	0	0	0	T	103537720	G	T	103537720	3	4	31	1	0	0	0	0	1	0	0	0	10404	1232	43	3	2969	3	NFKB1	4	103537720	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	3300608	103537720	87616556	672	6046										
MANBA	4126	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	103557078	103557078	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cacaccatagatatagaacgTgttttcattctcaaagccta	5	10	2	2	rs113843904		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MANBA-91	NM_005908	exon15	c.A2101G	p.T701A	AGAACGTGTTTTC	.	135	28	159	0	T|0.500;C|0.500	0	0	0	0	0	C	103557078	T	C	103557078	3	2	31	1	0	0	0	0	1	0	0	0	9247	1696	59	4	550	4	MANBA	4	103557078	Missense_Mutation	SNP	T	TCGA-OR-A5KB-01A-11D-A30A-10	19358	103557078	87597198	673	6047										
CENPE	1062	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	104032111	104032111	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tgttttgtacaatgccgctgCcacctccacaagttaagggt	9	11	0	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CENPE-277	NM_001813	exon47	c.G7598T	p.G2533V	CCGCTGCCACCTC	.	49	24	69	0	.	0	0	0	0	0	A	104032111	C	A	104032111	3	1	31	1	0	0	0	0	1	0	0	0	3236	739	26	3	519	3	CENPE	4	104032111	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	475033	104032111	87122165	674	6048										
CENPE	1062	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	104066245	104066245	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	agtgttttctttcagttggtCtctctctatctgaagggcct	9	9	5	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CENPE-277	NM_001813	exon32	c.G4819T	p.D1607Y	GTTGGTCTCTCTC	.	33	13	37	0	.	0	0	0	0	0	A	104066245	C	A	104066245	3	1	31	1	0	0	0	0	1	0	0	0	3236	913	32	3	3358	3	CENPE	4	104066245	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	34134	104066245	87088031	675	6049										
CENPE	1062	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	104080288	104080288	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tatacttttgctcaaagtccAtatgaagggttttgaaattt	7	5	1	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CENPE-277	NM_001813	exon22	c.T2480A	p.M827K	AAGTCCATATGAA	.	61	30	95	0	.	0	0	0	0	0	T	104080288	A	T	104080288	3	4	31	1	0	0	0	0	1	0	0	0	3236	217	8	5	5737	5	CENPE	4	104080288	Missense_Mutation	SNP	A	TCGA-OR-A5KB-01A-11D-A30A-10	14043	104080288	87073988	676	6050										
CENPE	1062	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	104102532	104102532	+	Nonsense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	aagatccattatttcttttcTataccttttcaggagagctt	5	8	3	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CENPE-277	NM_001813	exon12	c.A1045T	p.R349X	CTTTTCTATACCT	.	193	58	214	0	.	0	0	0	0	0	A	104102532	T	A	104102532	4	1	31	1	0	0	0	0	0	1	0	0	3236	1530	53	5	7212	5	CENPE	4	104102532	Nonsense_Mutation	SNP	T	TCGA-OR-A5KB-01A-11D-A30A-10	22244	104102532	87051744	677	6051										
GSTCD	79807	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	106640417	106640417	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cagaaggctgatggagttggGcctccccttactaagggaaa	13	9	0	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GSTCD-92	NM_001031720	exon3	c.G627T	p.G209G	AGTTGGGCCTCCC	.	94	38	114	2	.	0	0	0	0	0	T	106640417	G	T	106640417	2	4	31	1	0	0	0	0	0	0	0	1	6856	1190	42	3		3	GSTCD	4	106640417	Silent	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	2537885	106640417	84513859	678	6052										
DKK2	27123	ucsc.edu;bcgsc.ca	37	chr4	107845222	107845222	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cgctggaaaatttccagcccAtgagaacccttcttgcgttg	9	12	1	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DKK2-661	NM_014421	exon4	c.T669A	p.H223Q	CAGCCCATGAGAA	.	250	54	323	2	.	0	0	0	0	0	T	107845222	A	T	107845222	3	4	31	1	0	0	0	0	1	0	0	0	4556	214	8	5	114	5	DKK2	4	107845222	Missense_Mutation	SNP	A	TCGA-OR-A5KB-01A-11D-A30A-10	1204805	107845222	83309054	679	6053										
DKK2	27123	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	107956686	107956686	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	atctgtgagctctccaccatCagcaccgcggccagtaggag	11	14	3	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DKK2-661	NM_014421	exon1	c.G63T	p.L21L	CACCATCAGCACC	.	121	47	140	0	.	0	0	0	0	0	A	107956686	C	A	107956686	2	1	31	1	0	0	0	0	0	0	0	1	4556	813	29	3		3	DKK2	4	107956686	Silent	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	111464	107956686	83197590	680	6054										
PITX2	5308	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	111539439	111539439	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	aacatacggaggagtcggcgGcgcgtaaggacaggcaggcg	18	9	0	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PITX2-650	NM_000325	exon3	c.C817G	p.P273A	TCGGCGGCGCGTA	.	257	151	217	0	.	0	0	0	0	0	C	111539439	G	C	111539439	3	2	31	1	0	0	0	0	1	0	0	0	11984	1203	42	3	161	3	PITX2	4	111539439	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	3582753	111539439	79614837	681	6055										
C4orf32	132720	hgsc.bcm.edu	37	chr4	113066831	113066831	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gcgggaggcggcagggaccgGgtgggatcccggggcgagcc	23	11	0	0	rs10002700		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	C4orf32-90	NM_152400	exon1	c.G95A	p.G32E	GGACCGGGTGGGA	.	5	5	0	0	G|0.022;A|0.978	0	0	0	0	0	A	113066831	G	A	113066831	3	1	31	1	0	0	0	0	1	0	0	0	2268	1232	43	3	97	3	C4orf32	4	113066831	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	1527392	113066831	78087445	682	6056										
ANK2	287	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	114199709	114199709	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gtgcttcccctcatgccactGccaaggtgaggaccacagaa	10	14	1	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ANK2-583	NM_001148	exon17	c.G1876T	p.A626S	GCCACTGCCAAGG	.	187	116	118	1	.	0	0	0	0	0	T	114199709	G	T	114199709	3	4	31	1	0	0	0	0	1	0	0	0	621	1319	46	3	1967	3	ANK2	4	114199709	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	1132878	114199709	76954567	683	6057										
ANK2	287	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	114279073	114279073	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cccaacaagtgagcaaaaccCatttctgtttcaggaaggaa	8	10	2	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ANK2-583	NM_001148	exon38	c.C9299G	p.P3100R	AAAACCCATTTCT	.	110	73	86	0	.	0	0	0	0	0	G	114279073	C	G	114279073	3	3	31	1	0	0	0	0	1	0	0	0	621	594	21	3	9514	3	ANK2	4	114279073	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	79364	114279073	76875203	684	6058										
ANK2	287	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	114294594	114294594	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ttgtattgaagagtgacaccGagcagtcagaggtgagacaa	13	6	1	5	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ANK2-583	NM_001148	exon45	c.G11848A	p.E3950K	GACACCGAGCAGT	.	427	250	308	0	.	0	0	0	0	0	A	114294594	G	A	114294594	3	1	31	1	0	0	0	0	1	0	0	0	621	1059	37	1	12091	1	ANK2	4	114294594	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	15521	114294594	76859682	685	6059										
UGT8	7368	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	115544819	115544819	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ctgcctaatgttgtttatgtAggaggaatcctaaccaaacc	8	9	0	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	UGT8-92	NM_003360	exon1	c.A783T	p.V261V	TTATGTAGGAGGA	.	163	91	126	0	.	0	0	0	0	0	T	115544819	A	T	115544819	2	4	31	1	0	0	0	0	0	0	0	1	17003	407	15	5		5	UGT8	4	115544819	Silent	SNP	A	TCGA-OR-A5KB-01A-11D-A30A-10	1250225	115544819	75609457	686	6060										
NDST4	64579	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	115773935	115773935	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	taagtggtcacaagttttctCtctggaccagatgtctttgt	9	8	4	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	NDST4-94	NM_022569	exon8	c.G1762T	p.E588X	TTTTCTCTCTGGA	.	112	69	108	0	.	0	0	0	0	0	A	115773935	C	A	115773935	4	1	31	1	0	0	0	0	0	1	0	0	10287	922	32	3	884	3	NDST4	4	115773935	Nonsense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	229116	115773935	75380341	687	6061										
SYNPO2	171024	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	119978893	119978893	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tatgggctcatgtggaaggcAagagtataatgtcacagcca	12	7	2	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SYNPO2-92	NM_133477	exon5	c.A3590T	p.Q1197L	GAAGGCAAGAGTA	.	490	66	328	0	.	0	0	0	0	0	T	119978893	A	T	119978893	3	4	31	1	0	0	0	0	1	0	0	0	15494	130	5	5	3720	5	SYNPO2	4	119978893	Missense_Mutation	SNP	A	TCGA-OR-A5KB-01A-11D-A30A-10	4204958	119978893	71175383	688	6062										
ANXA5	308	bcgsc.ca	37	chr4	122593694	122593694	+	Nonsense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tttttttcactcaccctttcTcaaatgagacacacttcgtg	4	12	3	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ANXA5-91	NM_001154	exon9	c.A619T	p.R207X	CCTTTCTCAAATG	.	59	37	34	1	.	0	0	0	0	0	A	122593694	T	A	122593694	4	1	31	1	0	0	0	0	0	1	0	0	721	1559	54	5	363	5	ANXA5	4	122593694	Nonsense_Mutation	SNP	T	TCGA-OR-A5KB-01A-11D-A30A-10	2614801	122593694	68560582	689	6063										
TRPC3	7222	ucsc.edu;bcgsc.ca	37	chr4	122853706	122853706	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	agtgcgccgccaggatgatgGgggtgatgtccggcgagaag	19	8	0	3	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TRPC3-92	NM_001130698	exon2	c.C707T	p.P236L	ATGATGGGGGTGA	.	350	225	222	3	.	0	0	0	0	0	A	122853706	G	A	122853706	3	1	31	1	0	0	0	0	1	0	0	0	16617	1232	43	3	2102	3	TRPC3	4	122853706	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	260012	122853706	68300570	690	6064										
TRPC3	7222	bcgsc.ca	37	chr4	122853981	122853981	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	agcgcgttctggcccatgtaGtccacgcagttgacgttcag	12	12	2	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TRPC3-92	NM_001130698	exon2	c.C432A	p.D144E	CATGTAGTCCACG	.	469	307	203	4	.	0	0	0	0	0	T	122853981	G	T	122853981	3	4	31	1	0	0	0	0	1	0	0	0	16617	1020	36	3	2377	3	TRPC3	4	122853981	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	275	122853981	68300295	691	6065										
KIAA1109	84162	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	123227129	123227129	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	agaagaaatcagtggttcttCagatagggaagctgtgctta	12	5	3	3	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	KIAA1109-80	NM_015312	exon55	c.C9770A	p.S3257X	GTTCTTCAGATAG	.	99	61	92	1	.	0	0	0	0	0	A	123227129	C	A	123227129	4	1	31	1	0	0	0	0	0	1	0	0	8229	838	29	3	9988	3	KIAA1109	4	123227129	Nonsense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	373148	123227129	67927147	692	6066										
ANKRD50	57182	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	125591276	125591276	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tcaatgtgcccttcctgggcTgcaatacagagtgcagttgc	11	11	1	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ANKRD50-90	NM_020337	exon4	c.A3156T	p.A1052A	CTGGGCTGCAATA	.	498	320	348	0	.	0	0	0	0	0	A	125591276	T	A	125591276	2	1	31	1	0	0	0	0	0	0	0	1	677	1567	55	5		5	ANKRD50	4	125591276	Silent	SNP	T	TCGA-OR-A5KB-01A-11D-A30A-10	2364147	125591276	65563000	693	6067										
ANKRD50	57182	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr4	125592669	125592669	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	taaccaccttggtatgtcccTgtctagccgctagagtgagt	10	11	1	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ANKRD50-90	NM_020337	exon4	c.A1763C	p.Q588P	TGTCCCTGTCTAG	.	152	13	105	0	.	0	0	0	0	0	G	125592669	T	G	125592669	3	3	31	1	0	0	0	0	1	0	0	0	677	1580	55	5	2530	5	ANKRD50	4	125592669	Missense_Mutation	SNP	T	TCGA-OR-A5KB-01A-11D-A30A-10	1393	125592669	65561607	694	6068										
FAT4	79633	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	126370695	126370695	+	Nonsense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gggaagatacagaccgttacAgaattcgagtttccgcacat	10	9	0	3	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FAT4-108	NM_024582	exon9	c.A8524T	p.R2842X	CGTTACAGAATTC	.	124	18	92	0	.	0	0	0	0	0	T	126370695	A	T	126370695	4	4	31	1	0	0	0	0	0	1	0	0	5711	180	7	5	8558	5	FAT4	4	126370695	Nonsense_Mutation	SNP	A	TCGA-OR-A5KB-01A-11D-A30A-10	778026	126370695	64783581	695	6069										
FAT4	79633	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	126372220	126372220	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gaagggtttccagatcaataAgaagactggacagatttatg	11	5	1	4	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FAT4-108	NM_024582	exon9	c.A10049T	p.K3350M	TCAATAAGAAGAC	.	141	84	107	0	.	0	0	0	0	0	T	126372220	A	T	126372220	3	4	31	1	0	0	0	0	1	0	0	0	5711	72	3	5	10083	5	FAT4	4	126372220	Missense_Mutation	SNP	A	TCGA-OR-A5KB-01A-11D-A30A-10	1525	126372220	64782056	696	6070										
SCLT1	132320	broad.mit.edu;ucsc.edu	37	chr4	129964623	129964623	+	Splice_Site	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	taacaagaggagctaaaaagCtaaaaaaagacaataaaaat	6	4	0	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SCLT1-525	NM_144643	exon5	c.162-1G>T	.	AAAAAGCTAAAAA	.	61	11	124	2	.	0	0	0	0	0	A	129964623	C	A	129964623	5	1	31	1	0	0	0	0	0	0	1	0	13941	811	28	3	1977	3	SCLT1	4	129964623	Splice_Site	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	3592403	129964623	61189653	697	6071										
PCDH10	57575	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	134071578	134071578	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gcccctcctgtgtcctgcacCtggaggtctttctggagaac	11	14	2	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PCDH10-92	NM_032961	exon1	c.C283A	p.L95M	CTGCACCTGGAGG	.	65	16	140	0	.	0	0	0	0	0	A	134071578	C	A	134071578	3	1	31	1	0	0	0	0	1	0	0	0	11536	680	24	3	285	3	PCDH10	4	134071578	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	4106955	134071578	57082698	698	6072										
PCDH10	57575	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	134071922	134071922	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gcggtggacggaggaggtggGggaggagtaggagaaggagg	26	2	0	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PCDH10-92	NM_032961	exon1	c.G627A	p.G209G	AGGTGGGGGAGGA	.	77	27	70	0	.	0	0	0	0	0	A	134071922	G	A	134071922	2	1	31	1	0	0	0	0	0	0	0	1	11536	1219	43	3		3	PCDH10	4	134071922	Silent	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	344	134071922	57082354	699	6073										
PCDH10	57575	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	134073851	134073851	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	acggacactgagcacaacccCtgcggggccatcgtcaccgg	12	16	1	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PCDH10-92	NM_032961	exon1	c.C2556A	p.P852P	CAACCCCTGCGGG	.	160	60	256	0	.	0	0	0	0	0	A	134073851	C	A	134073851	2	1	31	1	0	0	0	0	0	0	0	1	11536	668	24	3		3	PCDH10	4	134073851	Silent	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	1929	134073851	57080425	700	6074										
PCDH18	54510	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	138451929	138451929	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	agactgggtgtccccctgtcCtcagcgattacagtcaaact	9	13	2	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PCDH18-185	NM_019035	exon1	c.G1314T	p.E438D	CCTGTCCTCAGCG	.	29	5	65	0	.	0	0	0	0	0	A	138451929	C	A	138451929	3	1	31	1	0	0	0	0	1	0	0	0	11542	680	24	3	2109	3	PCDH18	4	138451929	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	4378078	138451929	52702347	701	6075										
ZNF330	27309	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	142155000	142155000	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	accacgatgaggaggaggatGagtatgaagcagaggatgat	16	4	0	5	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ZNF330-90	NM_014487	exon10	c.G820T	p.E274X	GAGGATGAGTATG	.	176	42	243	1	.	0	0	0	0	0	T	142155000	G	T	142155000	4	4	31	1	0	0	0	0	0	1	0	0	17885	1291	45	3	854	3	ZNF330	4	142155000	Nonsense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	3703071	142155000	48999276	702	6076										
GAB1	2549	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	144359748	144359748	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tgtggatttaaacaaattgcGaaaaggtcagctctagttga	10	5	2	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GAB1-1146	NM_207123	exon4	c.G1190C	p.R397P	AATTGCGAAAAGG	.	44	11	71	0	.	0	0	0	0	0	C	144359748	G	C	144359748	3	2	31	1	0	0	0	0	1	0	0	0	6167	1058	37	2	1204	2	GAB1	4	144359748	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	2204748	144359748	46794528	703	6077										
MMAA	166785	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr4	146563573	146563573	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	atagaatattttggaaaaatGcttactgagagagggcacaa	10	4	0	3	rs186933110	alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MMAA-91	NM_172250	exon3	c.G498T	p.M166I	AAAAATGCTTACT	.	71	13	102	0	G|0.999;A|0.000	0	0	0	0	0	T	146563573	G	T	146563573	3	4	31	1	0	0	0	0	1	0	0	0	9667	1319	46	3	504	3	MMAA	4	146563573	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	2203825	146563573	44590703	704	6078										
ARHGAP10	79658	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	148968042	148968042	+	Splice_Site	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	caatgctttttttcctcctaGgtgacaatccttacccttcc	4	14	0	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ARHGAP10-229	NM_024605	exon20	c.1868-1G>T	.	CTCCTAGGTGACA	.	25	9	40	0	.	0	0	0	0	0	T	148968042	G	T	148968042	5	4	31	1	0	0	0	0	0	0	1	0	862	1014	35	3	1945	3	ARHGAP10	4	148968042	Splice_Site	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	2404469	148968042	42186234	705	6079										
SFRP2	6423	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	154709637	154709637	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cggtccttcacctgcacgcaGagcgagtggcatggctggat	14	12	1	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SFRP2-659	NM_003013	exon1	c.C351A	p.L117L	CACGCAGAGCGAG	.	200	48	256	0	.	0	0	0	0	0	T	154709637	G	T	154709637	2	4	31	1	0	0	0	0	0	0	0	1	14197	929	33	3		3	SFRP2	4	154709637	Silent	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	5741595	154709637	36444639	706	6080										
DCHS2	54798	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	155156608	155156608	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	caaccattccggagtggcatCcacagggaccacctcgttac	9	15	0	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DCHS2-94	NM_017639	exon25	c.G7831A	p.D2611N	TGGCATCCACAGG	.	64	20	129	0	.	0	0	0	0	0	T	155156608	C	T	155156608	3	4	31	1	0	0	0	0	1	0	0	0	4294	855	30	3	923	3	DCHS2	4	155156608	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	446971	155156608	35997668	707	6081										
DCHS2	54798	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	155241704	155241704	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	aagaaataaaagtggggttgTggtcatttacatccaaaatc	9	5	1	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DCHS2-94	NM_017639	exon14	c.A3482T	p.H1161L	GGGTTGTGGTCAT	.	190	60	279	0	.	0	0	0	0	0	A	155241704	T	A	155241704	3	1	31	1	0	0	0	0	1	0	0	0	4294	1696	59	5	5316	5	DCHS2	4	155241704	Missense_Mutation	SNP	T	TCGA-OR-A5KB-01A-11D-A30A-10	85096	155241704	35912572	708	6082										
DCHS2	54798	ucsc.edu;bcgsc.ca	37	chr4	155411953	155411953	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tgggcaactggcaggcggaaGgcggtccctggcgggctgag	20	10	0	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DCHS2-94	NM_001142552	exon1	c.C555A	p.A185A	GCGGAAGGCGGTC	.	414	114	247	2	.	0	0	0	0	0	T	155411953	G	T	155411953	2	4	31	1	0	0	0	0	0	0	0	1	4294	987	35	3		3	DCHS2	4	155411953	Silent	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	170249	155411953	35742323	709	6083										
GRIA2	2891	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	158224710	158224710	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tcctattcttctagtctgctCccagttttcgagaggagtct	8	11	4	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GRIA2-515	NM_000826	exon3	c.C236A	p.S79Y	TCTGCTCCCAGTT	.	49	8	68	0	.	0	0	0	0	0	A	158224710	C	A	158224710	3	1	31	1	0	0	0	0	1	0	0	0	6789	855	30	3	246	3	GRIA2	4	158224710	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	2812757	158224710	32929566	710	6084										
GRIA2	2891	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	158281286	158281287	+	Nonsense_Mutation	DNP	CC	CC	AG													0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	catcgcaacacctaaaggatCctcattaaggtgggtggaat					novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	CC	CC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GRIA2-515	NM_000826	exon13	c.C2283G	p.S761*	AGGATCCTCATTA	.	151	0	231	0	.	0	0	0	0	0	AG	158281287	CC	AG	158281286	4	1	31	1	0	0	0	0	0	1	0	0	6789	855	30	3	2332	3	GRIA2	4	158281286	Nonsense_Mutation	DNP	CC	TCGA-OR-A5KB-01A-11D-A30A-10	56576	158281286	32872990	711	6085										
FAM198B	51313	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr4	159092012	159092012	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ggtcgctctccaatcttaacCaggtttgctccctgagcgta	9	13	2	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FAM198B-90	NM_016613	exon2	c.G516C	p.L172L	CTTAACCAGGTTT	.	91	24	134	0	.	0	0	0	0	0	G	159092012	C	G	159092012	2	3	31	1	0	0	0	0	0	0	0	1	5545	581	21	3		3	FAM198B	4	159092012	Silent	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	810726	159092012	32062264	712	6086										
TMEM144	55314	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	159162724	159162724	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gttcatagcaaatcactctcTgagtgctgtggtcagttttc	9	9	4	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TMEM144-90	NM_018342	exon11	c.T866A	p.L289Q	ACTCTCTGAGTGC	.	35	10	55	0	.	0	0	0	0	0	A	159162724	T	A	159162724	3	1	31	1	0	0	0	0	1	0	0	0	16095	1580	55	5	900	5	TMEM144	4	159162724	Missense_Mutation	SNP	T	TCGA-OR-A5KB-01A-11D-A30A-10	70712	159162724	31991552	713	6087										
RXFP1	59350	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	159573178	159573178	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gtgaaatgtcactgatttctCaatcaacgagactcaattcc	6	10	4	3	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	RXFP1-91	NM_001253727	exon18	c.C2326A	p.Q776K	ATTTCTCAATCAA	.	46	9	67	0	.	0	0	0	0	0	A	159573178	C	A	159573178	3	1	31	1	0	0	0	0	1	0	0	0	13794	827	29	3	2315	3	RXFP1	4	159573178	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	410454	159573178	31581098	714	6088										
NPY1R	4886	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	164247178	164247178	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cggctcatcagtcattacttGgtagatcaggaaaggcaaag	11	8	4	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	NPY1R-523	NM_000909	exon2	c.C529A	p.Q177K	TTACTTGGTAGAT	.	124	26	199	0	.	0	0	0	0	0	T	164247178	G	T	164247178	3	4	31	1	0	0	0	0	1	0	0	0	10637	1357	47	3	633	3	NPY1R	4	164247178	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	4674000	164247178	26907098	715	6089										
TKTL2	84076	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	164393463	164393463	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cagtttctggttggctggttCgaatgaagcacattcccttg	11	9	1	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TKTL2-95	NM_032136	exon1	c.G1424T	p.R475L	CTGGTTCGAATGA	.	86	25	130	0	.	0	0	0	0	0	A	164393463	C	A	164393463	3	1	31	1	0	0	0	0	1	0	0	0	15973	884	31	2	460	2	TKTL2	4	164393463	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	146285	164393463	26760813	716	6090										
TLL1	7092	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	166960572	166960572	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ttgaagtaagagacgggtacTggagaaaatcacctctcctt	10	8	2	3	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TLL1-158	NM_012464	exon10	c.T1240A	p.W414R	GGGTACTGGAGAA	.	63	13	100	0	.	0	0	0	0	0	A	166960572	T	A	166960572	3	1	31	1	0	0	0	0	1	0	0	0	15982	1580	55	5	1278	5	TLL1	4	166960572	Missense_Mutation	SNP	T	TCGA-OR-A5KB-01A-11D-A30A-10	2567109	166960572	24193704	717	6091										
TLL1	7092	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	167020586	167020586	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tccttccagacatttgaagtGgaggaagaagcagactgtgg	13	7	0	4	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TLL1-158	NM_012464	exon20	c.G2814T	p.V938V	TGAAGTGGAGGAA	.	172	55	290	0	.	0	0	0	0	0	T	167020586	G	T	167020586	2	4	31	1	0	0	0	0	0	0	0	1	15982	1335	47	3		3	TLL1	4	167020586	Silent	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	60014	167020586	24133690	718	6092										
DDX60L	91351	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	169383010	169383010	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	acgtttgtaaatcactcaggCcttcctctgaaactatcaga	6	11	4	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DDX60L-69	NM_001012967	exon5	c.G446T	p.G149V	CTCAGGCCTTCCT	.	87	23	86	0	.	0	0	0	0	0	A	169383010	C	A	169383010	3	1	31	1	0	0	0	0	1	0	0	0	4385	739	26	3	4810	3	DDX60L	4	169383010	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	2362424	169383010	21771266	719	6093										
NEK1	4750	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	170506532	170506532	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	aaacttttcaatgcgtttggCtataaaacctttctccaata	4	9	2	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	NEK1-361	NM_001199399	exon10	c.G775T	p.A259S	GTTTGGCTATAAA	.	90	17	126	0	.	0	0	0	0	0	A	170506532	C	A	170506532	3	1	31	1	0	0	0	0	1	0	0	0	10350	797	28	3	3105	3	NEK1	4	170506532	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	1123522	170506532	20647744	720	6094										
GALNTL6	442117	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	173734869	173734869	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	agggcagatcccagcgacccTtttgagtgagtagcagccaa	12	11	0	3	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GALNTL6-137	NM_001034845	exon7	c.T918C	p.P306P	CGACCCTTTTGAG	.	73	23	84	0	.	0	0	0	0	0	C	173734869	T	C	173734869	2	2	31	1	0	0	0	0	0	0	0	1	6245	1596	56	4		4	GALNTL6	4	173734869	Silent	SNP	T	TCGA-OR-A5KB-01A-11D-A30A-10	3228337	173734869	17419407	721	6095										
WDR17	116966	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	177098263	177098263	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ttaaaaattgaatatctttcTgaggaattggatgcatggag	10	3	2	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	WDR17-95	NM_170710	exon29	c.T3621A	p.S1207S	TCTTTCTGAGGAA	.	49	14	58	0	.	0	0	0	0	0	A	177098263	T	A	177098263	2	1	31	1	0	0	0	0	0	0	0	1	17315	1567	55	5		5	WDR17	4	177098263	Silent	SNP	T	TCGA-OR-A5KB-01A-11D-A30A-10	3363394	177098263	14056013	722	6096										
MTNR1A	4543	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	187455197	187455197	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	atggtgacaaaattcctgaaGtcctgtggtttcagtttggg	12	6	1	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MTNR1A-524	NM_005958	exon2	c.C699A	p.D233E	CCTGAAGTCCTGT	.	219	62	230	0	.	0	0	0	0	0	T	187455197	G	T	187455197	3	4	31	1	0	0	0	0	1	0	0	0	9979	1020	36	3	357	3	MTNR1A	4	187455197	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	10356934	187455197	3699079	723	6097										
MTNR1A	4543	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	187455239	187455239	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ttgcggtcaggtttcaccctCtgtctgacctggagaaccag	11	12	4	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MTNR1A-524	NM_005958	exon2	c.G657T	p.Q219H	CACCCTCTGTCTG	.	236	73	253	0	.	0	0	0	0	0	A	187455239	C	A	187455239	3	1	31	1	0	0	0	0	1	0	0	0	9979	912	32	3	399	3	MTNR1A	4	187455239	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	42	187455239	3699037	724	6098										
FAT1	2195	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	187539244	187539245	+	Missense_Mutation	DNP	CC	CC	AA													0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cctgagtcagcatcagatgcCctgatctgaattactctact					novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	CC	CC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FAT1-34	NM_005245	exon10	c.G8495T	p.R2834I	GATGCCCTGATCT	.	64	3	112	0	.	0	0	0	0	0	AA	187539245	CC	AA	187539244	3	1	31	1	0	0	0	0	1	0	0	0	5708	622	22	3	5342	3	FAT1	4	187539244	Missense_Mutation	DNP	CC	TCGA-OR-A5KB-01A-11D-A30A-10	84005	187539244	3615032	725	6099										
FAT1	2195	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	187541066	187541066	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tgaagttaatagtgaactggCtgaaagggtctccgtctgtg	13	6	2	3	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FAT1-34	NM_005245	exon10	c.G6674T	p.S2225I	AACTGGCTGAAAG	.	128	35	173	2	.	0	0	0	0	0	A	187541066	C	A	187541066	3	1	31	1	0	0	0	0	1	0	0	0	5708	797	28	3	7164	3	FAT1	4	187541066	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	1822	187541066	3613210	726	6100										
TRIML1	339976	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	189068073	189068073	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ggaagcagacagcagctaccCgacaacccggaaagatttga	11	11	0	3	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TRIML1-156	NM_178556	exon6	c.C954A	p.P318P	GCTACCCGACAAC	.	179	57	197	0	.	0	0	0	0	0	A	189068073	C	A	189068073	2	1	31	1	0	0	0	0	0	0	0	1	16588	639	23	2		2	TRIML1	4	189068073	Silent	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	1527007	189068073	2086203	727	6101										
IRX4	50805	ucsc.edu;bcgsc.ca	37	chr5	1879752	1879752	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	acgtcatcttgttctccttcTtgaggcgccggcgcgcgttg	12	13	4	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	IRX4-226	NM_016358	exon4	c.A602G	p.K201R	TCCTTCTTGAGGC	.	285	94	156	3	.	0	0	0	0	0	C	1879752	T	C	1879752	3	2	31	1	0	0	0	0	1	0	0	0	7867	1609	56	4	965	4	IRX4	5	1879752	Missense_Mutation	SNP	T	TCGA-OR-A5KB-01A-11D-A30A-10		1879752	179035508	728	6102										
KIAA0947	23379	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	5457693	5457693	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tagtacaaagtcatcgtgacGgtggtagtactgaatttgtt	11	5	1	2	rs76783275	alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	KIAA0947-48	NM_015325	exon12	c.G940T	p.G314C	CGTGACGGTGGTA	.	185	61	193	0	G|0.986;A|0.014	0	0	0	0	0	T	5457693	G	T	5457693	3	4	31	1	0	0	0	0	1	0	0	0	8223	1116	39	2	986	2	KIAA0947	5	5457693	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	3577941	5457693	175457567	729	6103										
KIAA0947	23379	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	5460966	5460966	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ccattcataaactcactcgaGgtctatgcattgagagattg	8	9	3	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	KIAA0947-48	NM_015325	exon13	c.G1519T	p.G507C	ACTCGAGGTCTAT	.	216	78	211	0	.	0	0	0	0	0	T	5460966	G	T	5460966	3	4	31	1	0	0	0	0	1	0	0	0	8223	1000	35	3	1569	3	KIAA0947	5	5460966	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	3273	5460966	175454294	730	6104										
KIAA0947	23379	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	5462358	5462358	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tcctcatccaaaaccaagacAttgtgagagaagctgcagtg	9	10	1	3	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	KIAA0947-48	NM_015325	exon13	c.A2911T	p.I971F	CAAGACATTGTGA	.	86	32	81	0	.	0	0	0	0	0	T	5462358	A	T	5462358	3	4	31	1	0	0	0	0	1	0	0	0	8223	217	8	5	2961	5	KIAA0947	5	5462358	Missense_Mutation	SNP	A	TCGA-OR-A5KB-01A-11D-A30A-10	1392	5462358	175452902	731	6105										
KIAA0947	23379	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	5466585	5466585	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tcggagacttggaaagagctCgtttgttttgctacagccta	11	8	0	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	KIAA0947-48	NM_015325	exon14	c.C6031G	p.R2011G	AGAGCTCGTTTGT	.	105	13	125	0	.	0	0	0	0	0	G	5466585	C	G	5466585	3	3	31	1	0	0	0	0	1	0	0	0	8223	884	31	2	6085	2	KIAA0947	5	5466585	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	4227	5466585	175448675	732	6106										
SEMA5A	9037	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	9154783	9154783	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	aggtctgattcaggggtaccCgcactttcttaatggttccg	11	10	3	1	rs138343991	alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SEMA5A-91	NM_003966	exon12	c.G1298T	p.R433L	GGTACCCGCACTT	.	377	106	272	0	C|0.999;T|0.000	0	0	0	0	0	A	9154783	C	A	9154783	3	1	31	1	0	0	0	0	1	0	0	0	14072	652	23	2	1974	2	SEMA5A	5	9154783	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	3688198	9154783	171760477	733	6107										
SEMA5A	9037	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	9202086	9202086	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cacattggtggtaaagatgcCatagatcaaatccagctcag	9	9	2	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SEMA5A-91	NM_003966	exon9	c.G913T	p.G305C	AGATGCCATAGAT	.	269	87	259	1	.	0	0	0	0	0	A	9202086	C	A	9202086	3	1	31	1	0	0	0	0	1	0	0	0	14072	594	21	3	2371	3	SEMA5A	5	9202086	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	47303	9202086	171713174	734	6108										
CTNND2	1501	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	11364815	11364815	+	Silent	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cctgattacacacctgtgctCgtgcggtaggtgccggtgtg	14	11	0	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CTNND2-293	NM_001332	exon8	c.G1365C	p.T455T	TGTGCTCGTGCGG	.	61	30	73	0	.	0	0	0	0	0	G	11364815	C	G	11364815	2	3	31	1	0	0	0	0	0	0	0	1	4026	871	31	2		2	CTNND2	5	11364815	Silent	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	2162729	11364815	169550445	735	6109										
CTNND2	1501	broad.mit.edu;bcgsc.ca	37	chr5	11397217	11397217	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tgaaggggtggtttcccccaGggccagggtctggttgctat	16	9	1	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CTNND2-293	NM_001332	exon6	c.C538T	p.L180L	CCCCCAGGGCCAG	.	106	35	91	2	.	0	0	0	0	0	A	11397217	G	A	11397217	2	1	31	1	0	0	0	0	0	0	0	1	4026	991	35	3		3	CTNND2	5	11397217	Silent	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	32402	11397217	169518043	736	6110										
DNAH5	1767	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	13753344	13753344	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tactaaaacacaaattacctGgagttcatttcggctttctt	5	9	2	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DNAH5-182	NM_001369	exon63	c.C10870T	p.Q3624X	TTACCTGGAGTTC	.	67	19	59	0	.	0	0	0	0	0	A	13753344	G	A	13753344	4	1	31	1	0	0	0	0	0	1	0	0	4615	1357	47	3	3072	3	DNAH5	5	13753344	Nonsense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	2356127	13753344	167161916	737	6111										
DNAH5	1767	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	13841987	13841987	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	atcgtctcaccctcttgagaGgaaattgacagaattcgatc	8	10	2	3	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DNAH5-182	NM_001369	exon33	c.C5298G	p.S1766S	TTGAGAGGAAATT	.	62	24	67	0	.	0	0	0	0	0	C	13841987	G	C	13841987	2	2	31	1	0	0	0	0	0	0	0	1	4615	987	35	3		3	DNAH5	5	13841987	Silent	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	88643	13841987	167073273	738	6112										
FBXL7	23194	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	15928111	15928111	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tccacctcctcgtcctccatCaccggggagacggtggccat	10	17	1	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FBXL7-228	NM_012304	exon3	c.C240A	p.I80I	CTCCATCACCGGG	.	115	40	87	0	.	0	0	0	0	0	A	15928111	C	A	15928111	2	1	31	1	0	0	0	0	0	0	0	1	5743	816	29	3		3	FBXL7	5	15928111	Silent	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	2086124	15928111	164987149	739	6113										
FBXL7	23194	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	15928344	15928344	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gcggctctggaggactatccGcctgacgggcgagaccatca	14	13	2	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FBXL7-228	NM_012304	exon3	c.G473T	p.R158L	CTATCCGCCTGAC	.	148	50	75	0	.	0	0	0	0	0	T	15928344	G	T	15928344	3	4	31	1	0	0	0	0	1	0	0	0	5743	1087	38	2	483	2	FBXL7	5	15928344	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	233	15928344	164986916	740	6114										
FBXL7	23194	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	15928373	15928373	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gcgagaccatcaacgtggacCgcgccctcaaggtgctgacc	12	15	2	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FBXL7-228	NM_012304	exon3	c.C502T	p.R168C	GTGGACCGCGCCC	.	195	70	120	1	.	0	0	0	0	0	T	15928373	C	T	15928373	3	4	31	1	0	0	0	0	1	0	0	0	5743	652	23	1	512	1	FBXL7	5	15928373	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	29	15928373	164986887	741	6115										
CDH18	1016	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	19473645	19473645	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cttcaggtctgatatccctcCggtacttgagctcctcagca	8	14	3	2	rs140353037	alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CDH18-159	NM_004934	exon13	c.G2063T	p.R688L	TCCCTCCGGTACT	.	157	59	176	0	C|1.000;T|0.000	0	0	0	0	0	A	19473645	C	A	19473645	3	1	31	1	0	0	0	0	1	0	0	0	3109	652	23	2	313	2	CDH18	5	19473645	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	3545272	19473645	161441615	742	6116										
CDH12	1010	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	21755941	21755941	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tttcttcgggtttcaatcccCgctgtgttgtctacaaaaca	7	11	3	0	rs201811162	alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CDH12-92	NM_004061	exon14	c.G1644C	p.A548A	AATCCCCGCTGTG	.	140	42	170	1	C|0.999;T|0.001	0	0	0	0	0	G	21755941	C	G	21755941	2	3	31	1	0	0	0	0	0	0	0	1	3104	639	23	2		2	CDH12	5	21755941	Silent	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	2282296	21755941	159159319	743	6117										
CDH12	1010	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	21783535	21783535	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tgtctagtaattcattagtgGcgatggttccttcatttcca	8	8	3	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CDH12-92	NM_004061	exon11	c.C1325A	p.A442D	TTAGTGGCGATGG	.	95	32	88	0	.	0	0	0	0	0	T	21783535	G	T	21783535	3	4	31	1	0	0	0	0	1	0	0	0	3104	1203	42	3	1079	3	CDH12	5	21783535	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	27594	21783535	159131725	744	6118										
CDH12	1010	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	21854885	21854885	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tgcatctgtggccttgacctGgagtacatatgcacctggaa	11	10	1	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CDH12-92	NM_004061	exon7	c.C541T	p.Q181X	TGACCTGGAGTAC	.	172	58	173	0	.	0	0	0	0	0	A	21854885	G	A	21854885	4	1	31	1	0	0	0	0	0	1	0	0	3104	1357	47	3	1879	3	CDH12	5	21854885	Nonsense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	71350	21854885	159060375	745	6119										
PRDM9	56979	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	23524575	23524575	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gtctggtatggggatgaataCggccaggaactgggcatcaa	15	7	2	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PRDM9-139	NM_020227	exon10	c.C1083A	p.Y361X	TGAATACGGCCAG	.	255	92	225	0	.	0	0	0	0	0	A	23524575	C	A	23524575	4	1	31	1	0	0	0	0	0	1	0	0	12495	547	19	2	1117	2	PRDM9	5	23524575	Nonsense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	1669690	23524575	157390685	746	6120										
PRDM9	56979	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	23526532	23526532	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cagcaatatccagatccacaCagccgtaatgacaaaaccaa	5	13	0	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PRDM9-139	NM_020227	exon11	c.C1335A	p.H445Q	TCCACACAGCCGT	.	113	35	101	0	.	0	0	0	0	0	A	23526532	C	A	23526532	3	1	31	1	0	0	0	0	1	0	0	0	12495	477	17	3	1373	3	PRDM9	5	23526532	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	1957	23526532	157388728	747	6121										
PRDM9	56979	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr5	23527437	23527437	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gacacacacaggggagaagcCctatgtctgcagggagtgtg	15	9	1	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PRDM9-139	NM_020227	exon11	c.C2240A	p.P747H	AGAAGCCCTATGT	.	402	128	396	0	.	0	0	0	0	0	A	23527437	C	A	23527437	3	1	31	1	0	0	0	0	1	0	0	0	12495	623	22	3	2278	3	PRDM9	5	23527437	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	905	23527437	157387823	748	6122										
ADAMTS12	81792	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	33576158	33576158	+	Splice_Site	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	caggggtaggaaatgtcttaCctcgctccagtttccgacga	11	11	1	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ADAMTS12-232	NM_030955	exon20	c.3972+1G>T	.	GTCTTACCTCGCT	.	95	36	88	0	.	0	0	0	0	0	A	33576158	C	A	33576158	5	1	31	1	0	0	0	0	0	0	1	0	257	521	18	3	835	3	ADAMTS12	5	33576158	Splice_Site	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	10048721	33576158	147339102	749	6123										
ADAMTS12	81792	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	33576501	33576501	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	attactgtgctgaagggtggCcaccaggactccctgctgag	13	11	0	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ADAMTS12-232	NM_030955	exon19	c.G3630A	p.W1210X	GGGTGGCCACCAG	.	210	81	164	0	.	0	0	0	0	0	T	33576501	C	T	33576501	4	4	31	1	0	0	0	0	0	1	0	0	257	740	26	3	1178	3	ADAMTS12	5	33576501	Nonsense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	343	33576501	147338759	750	6124										
ADAMTS12	81792	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	33658359	33658359	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ttcattgatgttacaactgcGgtgaggctgacacattcctg	10	9	1	3	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ADAMTS12-232	NM_030955	exon7	c.C1120A	p.R374S	AACTGCGGTGAGG	.	224	80	194	0	.	0	0	0	0	0	T	33658359	G	T	33658359	3	4	31	1	0	0	0	0	1	0	0	0	257	1116	39	2	3736	2	ADAMTS12	5	33658359	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	81858	33658359	147256901	751	6125										
ADAMTS12	81792	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	33751563	33751563	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	aactttctgcctcctgtaaaCgatgtgcgggtggtaccctc	10	12	1	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ADAMTS12-232	NM_030955	exon3	c.G580T	p.V194F	TGTAAACGATGTG	.	223	80	235	1	.	0	0	0	0	0	A	33751563	C	A	33751563	3	1	31	1	0	0	0	0	1	0	0	0	257	536	19	2	4292	2	ADAMTS12	5	33751563	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	93204	33751563	147163697	752	6126										
RXFP3	51289	hgsc.bcm.edu;mdanderson.org	37	chr5	33938186	33938186	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gcggagccggacctgctctaCtacccacctggcgtcgtggt	13	15	1	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	RXFP3-91	NM_016568	exon1	c.C1341T	p.Y447Y	GCTCTACTACCCA	.	78	28	8	0	.	0	0	0	0	0	T	33938186	C	T	33938186	2	4	31	1	0	0	0	0	0	0	0	1	13796	576	20	3		3	RXFP3	5	33938186	Silent	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	186623	33938186	146977074	753	6127										
UGT3A1	133688	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	35968210	35968210	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gaaaaccacctgataacttgGtatgatttttcctcctcttt	5	10	1	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	UGT3A1-92	NM_152404	exon3	c.C222G	p.Y74X	AACTTGGTATGAT	.	67	25	57	0	.	0	0	0	0	0	C	35968210	G	C	35968210	4	2	31	1	0	0	0	0	0	1	0	0	17001	1256	44	3	1451	3	UGT3A1	5	35968210	Nonsense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	2030024	35968210	144947050	754	6128										
NIPBL	25836	broad.mit.edu	37	chr5	37000491	37000491	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ctagcctctaggaaacgacaTaaaaaagatgatgataaagc	8	7	1	3	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	NIPBL-293	NM_015384	exon12	c.T3321C	p.H1107H	ACGACATAAAAAA	.	81	10	94	1	.	0	0	0	0	0	C	37000491	T	C	37000491	2	2	31	1	0	0	0	0	0	0	0	1	10457	1403	49	4		4	NIPBL	5	37000491	Silent	SNP	T	TCGA-OR-A5KB-01A-11D-A30A-10	1032281	37000491	143914769	755	6129										
C5orf42	65250	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	37107729	37107729	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ggtccagggcccagtggacaGacaggccctggtcctccacg	14	15	0	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	C5orf42-94	NM_023073	exon52	c.C9569G	p.S3190C	TGGACAGACAGGC	.	348	55	262	1	.	0	0	0	0	0	C	37107729	G	C	37107729	3	2	31	1	0	0	0	0	1	0	0	0	2307	942	33	3	28	3	C5orf42	5	37107729	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	107238	37107729	143807531	756	6130										
EGFLAM	133584	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	38418309	38418309	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ctgtgaatgggaggagaattGacatgaggccctggcccctg	15	9	0	4	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	EGFLAM-187	NM_001205301	exon12	c.G1636C	p.D546H	AGAATTGACATGA	.	227	32	173	1	.	0	0	0	0	0	C	38418309	G	C	38418309	3	2	31	1	0	0	0	0	1	0	0	0	4977	1290	45	3	1696	3	EGFLAM	5	38418309	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	1310580	38418309	142496951	757	6131										
OSMR	9180	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	38881777	38881777	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ccctttggaatgtgccacacActttgtaagaataaagagtt	8	8	0	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OSMR-496	NM_001168355	exon4	c.A329T	p.H110L	CCACACACTTTGT	.	111	46	113	0	.	0	0	0	0	0	T	38881777	A	T	38881777	3	4	31	1	0	0	0	0	1	0	0	0	11321	159	6	5	339	5	OSMR	5	38881777	Missense_Mutation	SNP	A	TCGA-OR-A5KB-01A-11D-A30A-10	463468	38881777	142033483	758	6132										
FYB	2533	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr5	39202214	39202215	+	Frame_Shift_Ins	INS	-	-	T													0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	catctatcttcctatcttccINStttttttcttcaccattttt					novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FYB-24	NM_001243093	exon2	c.879_880insA	p.K293fs	ATCTTCCTTTTTT	.	67	20	58	0	.	0	0	0	0	0	T	39202215	-	T	39202214	7	5	31	1	0	1	1	0	0	0	0	0	6143	680	24	0	1712	0	FYB	5	39202214	Frame_Shift_Ins	INS	-	TCGA-OR-A5KB-01A-11D-A30A-10	320437	39202214	141713046	759	6133										
C9	735	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	39308382	39308382	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	catctttattaaattcagctCcaacagagatttcagagaaa	5	8	3	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	C9-90	NM_001737	exon8	c.G1190T	p.G397V	TCAGCTCCAACAG	.	223	77	203	0	.	0	0	0	0	0	A	39308382	C	A	39308382	3	1	31	1	0	0	0	0	1	0	0	0	2449	855	30	3	505	3	C9	5	39308382	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	106168	39308382	141606878	760	6134										
PTGER4	5734	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	40692043	40692043	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tcagtaaagcaatagagaagAtcaaatgcctcttctgccgc	8	10	4	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PTGER4-658	NM_000958	exon3	c.A1030T	p.I344F	GAGAAGATCAAAT	.	167	61	151	0	.	0	0	0	0	0	T	40692043	A	T	40692043	3	4	31	1	0	0	0	0	1	0	0	0	12778	333	12	5	1036	5	PTGER4	5	40692043	Missense_Mutation	SNP	A	TCGA-OR-A5KB-01A-11D-A30A-10	1383661	40692043	140223217	761	6135										
CARD6	84674	broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr5	40841514	40841514	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gagagtactccctcagagatCatagaaagagaaagaaaaaa	9	6	2	5	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CARD6-230	NM_032587	exon1	c.C30G	p.I10M	AGAGATCATAGAA	.	53	21	56	1	.	0	0	0	0	0	G	40841514	C	G	40841514	3	3	31	1	0	0	0	0	1	0	0	0	2656	816	29	3	32	3	CARD6	5	40841514	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	149471	40841514	140073746	762	6136										
HCN1	348980	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	45262200	45262201	+	Missense_Mutation	DNP	CC	CC	AA													0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	acgcgctgcgggacagtgctCctgccccctgcctgaaggcc					novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	CC	CC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	HCN1-91	NM_021072	exon8	c.G2495T	p.R832I	GTGCTCCTGCCCC	.	70	7	44	0	C|0.999;G|0.000	0	0	0	0	0	AA	45262201	CC	AA	45262200	3	1	31	1	0	0	0	0	1	0	0	0	7017	854	30	3	180	3	HCN1	5	45262200	Missense_Mutation	DNP	CC	TCGA-OR-A5KB-01A-11D-A30A-10	4420686	45262200	135653060	763	6137										
HCN1	348980	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	45353216	45353216	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tcttacctctctcagaggatCattgagttcattgagaatat	7	8	5	3	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	HCN1-91	NM_021072	exon5	c.G1363T	p.D455Y	GAGGATCATTGAG	.	62	23	59	0	.	0	0	0	0	0	A	45353216	C	A	45353216	3	1	31	1	0	0	0	0	1	0	0	0	7017	826	29	3	1325	3	HCN1	5	45353216	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	91016	45353216	135562044	764	6138										
ITGA2	3673	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	52368469	52368469	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ttccacaaagactgtggtgaGgacggactttgcatttctga	11	8	1	3	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ITGA2-226	NM_002203	exon19	c.G2373T	p.E791D	TGGTGAGGACGGA	.	50	10	63	0	.	0	0	0	0	0	T	52368469	G	T	52368469	3	4	31	1	0	0	0	0	1	0	0	0	7896	991	35	3	2447	3	ITGA2	5	52368469	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	7015253	52368469	128546791	765	6139										
CDC20B	166979	bcgsc.ca	37	chr5	54410099	54410099	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	agctgcagcagaaaacacccGggtctggtctggactcaaag	12	11	3	1	rs444527	byfrequency	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CDC20B-90	NM_001170402	exon12	c.C1507T	p.R503W	ACACCCGGGTCTG	.	257	8	255	3	G|0.861;A|0.139	0	0	0	0	0	A	54410099	G	A	54410099	3	1	31	1	0	0	0	0	1	0	0	0	3066	1115	39	1	56	1	CDC20B	5	54410099	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	2041630	54410099	126505161	766	6140										
GPX8	493869	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	54457048	54457048	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ccacaagattaagattctagGatctgaaggagaacctgcat	9	8	2	4	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GPX8-68	NM_001008397	exon2	c.G431T	p.G144V	TTCTAGGATCTGA	.	36	9	44	0	.	0	0	0	0	0	T	54457048	G	T	54457048	3	4	31	1	0	0	0	0	1	0	0	0	6767	1174	41	3	437	3	GPX8	5	54457048	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	46949	54457048	126458212	767	6141										
ACTBL2	345651	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	56778494	56778494	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ctgccttgcacatccctgacCcattatccactaccaaggca	5	17	0	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ACTBL2-25	NM_001017992	exon1	c.G41A	p.G14E	CCTGACCCATTAT	.	160	72	179	0	.	0	0	0	0	0	T	56778494	C	T	56778494	3	4	31	1	0	0	0	0	1	0	0	0	194	623	22	3	1093	3	ACTBL2	5	56778494	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	2321446	56778494	124136766	768	6142										
PDE4D	5144	ucsc.edu;bcgsc.ca	37	chr5	58270494	58270494	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tgaaagtttttgcactgttaCgtgtcaggagaacgatcatc	10	7	2	2	rs7736186	byfrequency;alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PDE4D-226	NM_001104631	exon15	c.G2427T	p.T809T	CTGTTACGTGTCA	.	62	9	86	1	C|0.986;T|0.014	0	0	0	0	0	A	58270494	C	A	58270494	2	1	31	1	0	0	0	0	0	0	0	1	11671	523	19	2		2	PDE4D	5	58270494	Silent	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	1492000	58270494	122644766	769	6143										
ADAMTS6	11174	hgsc.bcm.edu;bcgsc.ca	37	chr5	64483914	64483914	+	Frame_Shift_Del	DEL	G	G	-													0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gggctctttttcgacaggccGgtgtgttaaacaaccactgt					novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ADAMTS6-226	NM_197941	exon22	c.2839delC	p.R947fs	CAGGCCGGTGTGT	.	98	23	137	0	.	0	0	0	0	0	-	64483914	G	-	64483914	7	5	31	1	0	1	0	1	0	0	0	0	270	1115	39	0	530	0	ADAMTS6	5	64483914	Frame_Shift_Del	DEL	G	TCGA-OR-A5KB-01A-11D-A30A-10	6213420	64483914	116431346	770	6144										
ADAMTS6	11174	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	64747376	64747376	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tttccatcactttggtgggaGagaatggatttctgccattt	10	7	2	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ADAMTS6-226	NM_197941	exon7	c.C999G	p.L333L	GTGGGAGAGAATG	.	248	26	196	0	.	0	0	0	0	0	C	64747376	G	C	64747376	2	2	31	1	0	0	0	0	0	0	0	1	270	929	33	3		3	ADAMTS6	5	64747376	Silent	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	263462	64747376	116167884	771	6145										
ADAMTS6	11174	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	64755998	64755998	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	aagctgcacactcactcaccCgaaaccccacaatgagagtg	7	15	2	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ADAMTS6-226	NM_197941	exon4	c.G630T	p.S210S	CTCACCCGAAACC	.	81	21	76	0	.	0	0	0	0	0	A	64755998	C	A	64755998	2	1	31	1	0	0	0	0	0	0	0	1	270	666	23	2		2	ADAMTS6	5	64755998	Silent	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	8622	64755998	116159262	772	6146										
TNPO1	3842	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr5	72199544	72199545	+	Frame_Shift_Ins	INS	-	-	T													0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gcttgttacaggattttataINStttttttgtgatgccgttgc					novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TNPO1-228	NM_002270	exon23	c.2523_2524insT	p.I841fs	TTTTATATTTTTT	.	46	24	79	0	.	0	0	0	0	0	T	72199545	-	T	72199544	7	5	31	1	0	1	1	0	0	0	0	0	16372	439	16	0	2613	0	TNPO1	5	72199544	Frame_Shift_Ins	INS	-	TCGA-OR-A5KB-01A-11D-A30A-10	7443546	72199544	108715716	773	6147										
F2RL1	2150	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	76129178	76129178	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cttcctctctctggccattgGggtctttctgttcccagcct	8	15	4	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	F2RL1-226	NM_005242	exon2	c.G746T	p.G249V	CCATTGGGGTCTT	.	159	37	166	0	.	0	0	0	0	0	T	76129178	G	T	76129178	3	4	31	1	0	0	0	0	1	0	0	0	5357	1232	43	3	752	3	F2RL1	5	76129178	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	3929634	76129178	104786082	774	6148										
S100Z	170591	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	76173537	76173537	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ttggttgataagatagtgcaGgacctggatgccaataagga	13	5	0	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	S100Z-91	NM_130772	exon4	c.G180T	p.Q60H	AGTGCAGGACCTG	.	153	28	179	0	.	0	0	0	0	0	T	76173537	G	T	76173537	3	4	31	1	0	0	0	0	1	0	0	0	13827	991	35	3	186	3	S100Z	5	76173537	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	44359	76173537	104741723	775	6149										
PAPD4	167153	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	78944447	78944447	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ttttcttaaatagttgtgtgGagtttgacttgaatgtaaac	9	3	1	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PAPD4-69	NM_173797	exon10	c.G829T	p.E277X	TGTGTGGAGTTTG	.	99	18	137	0	.	0	0	0	0	0	T	78944447	G	T	78944447	4	4	31	1	0	0	0	0	0	1	0	0	11453	1175	41	3	859	3	PAPD4	5	78944447	Nonsense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	2770910	78944447	101970813	776	6150										
CMYA5	202333	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	79025201	79025201	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cttcaaatacacctccgattActggggcaatatacaaagaa	6	10	1	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CMYA5-77	NM_153610	exon2	c.A613G	p.T205A	CCGATTACTGGGG	.	160	23	195	0	.	0	0	0	0	0	G	79025201	A	G	79025201	3	3	31	1	0	0	0	0	1	0	0	0	3596	391	14	4	619	4	CMYA5	5	79025201	Missense_Mutation	SNP	A	TCGA-OR-A5KB-01A-11D-A30A-10	80754	79025201	101890059	777	6151										
CMYA5	202333	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	79031613	79031613	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tgttcctcctcatgttactgAtagtaaaagagtccagaagc	8	9	1	3	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CMYA5-77	NM_153610	exon2	c.A7025T	p.D2342V	TTACTGATAGTAA	.	123	31	117	1	.	0	0	0	0	0	T	79031613	A	T	79031613	3	4	31	1	0	0	0	0	1	0	0	0	3596	333	12	5	7031	5	CMYA5	5	79031613	Missense_Mutation	SNP	A	TCGA-OR-A5KB-01A-11D-A30A-10	6412	79031613	101883647	778	6152										
THBS4	7060	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	79366521	79366521	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	agatgcagacagagatggcaTtggcgacgcttgtgacgagg	16	7	0	4	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	THBS4-90	NM_003248	exon12	c.T1508G	p.I503S	ATGGCATTGGCGA	.	213	45	199	1	.	0	0	0	0	0	G	79366521	T	G	79366521	3	3	31	1	0	0	0	0	1	0	0	0	15893	1493	52	5	1554	5	THBS4	5	79366521	Missense_Mutation	SNP	T	TCGA-OR-A5KB-01A-11D-A30A-10	334908	79366521	101548739	779	6153										
VCAN	1462	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	82785935	82785935	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	agtcaaagtgggaaaaagccCaccggtgaggggctccctct	13	11	2	1	rs202176395	alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	VCAN-238	NM_004385	exon3	c.C89A	p.P30Q	AAAGCCCACCGGT	.	45	12	47	0	C|0.999;T|0.001	0	0	0	0	0	A	82785935	C	A	82785935	3	1	31	1	0	0	0	0	1	0	0	0	17176	594	21	3	95	3	VCAN	5	82785935	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	3419414	82785935	98129325	780	6154										
VCAN	1462	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	82808022	82808022	+	Silent	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ctggcaacagtgggggaactCcaggcggcatggaggaacgg	18	9	0	0	rs142777690	byfrequency;alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	VCAN-238	NM_004385	exon6	c.C849A	p.L283L	GGAACTCCAGGCG	.	102	52	161	1	C|0.999;T|0.001	0	0	0	0	0	A	82808022	C	A	82808022	2	1	31	1	0	0	0	0	0	0	0	1	17176	842	30	3		3	VCAN	5	82808022	Silent	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	22087	82808022	98107238	781	6155										
EDIL3	10085	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	83356153	83356153	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	actggtcattgtggccagagGtccaggcattcactttgcct	11	11	2	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	EDIL3-131	NM_005711	exon9	c.C1103T	p.T368I	CCAGAGGTCCAGG	.	140	21	128	1	.	0	0	0	0	0	A	83356153	G	A	83356153	3	1	31	1	0	0	0	0	1	0	0	0	4926	1261	44	3	351	3	EDIL3	5	83356153	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	548131	83356153	97559107	782	6156										
MEF2C	4208	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	88047710	88047710	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tggaggtcgatgtgttacacCaggagacatactattcctct	10	9	1	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MEF2C-704	NM_001193347	exon7	c.G607C	p.G203R	TTACACCAGGAGA	.	192	44	211	0	.	0	0	0	0	0	G	88047710	C	G	88047710	3	3	31	1	0	0	0	0	1	0	0	0	9485	594	21	3	896	3	MEF2C	5	88047710	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	4691557	88047710	92867550	783	6157										
POU5F2	134187	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	93077152	93077152	+	Missense_Mutation	SNP	C	C	A													0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gaccatcaccctgccaggggCcgcctgggtgctcaaccagg					novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_153216	exon1	c.G118T	p.A40S	CAGGGGCCGCCTG	.	144	68	102	1	.	0	0	0	0	0	A	93077152	C	A	93077152	3	1	31	1	0	0	0	0	1	0	0	0	12312	739	26	3	872	3	POU5F2	5	93077152	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	5029442	93077152	87838108	784	6158	58	2								
POU5F2	134187	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	93077153	93077153	+	Silent	SNP	C	C	A													0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	accatcaccctgccaggggcCgcctgggtgctcaaccaggt					novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_153216	exon1	c.G117T	p.A39A	AGGGGCCGCCTGG	.	145	68	102	0	.	0	0	0	0	0	A	93077153	C	A	93077153	2	1	31	1	0	0	0	0	0	0	0	1	12312	639	23	2		2	POU5F2	5	93077153	Silent	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	1	93077153	87838107	785	6159	58	2								
ANKRD32	84250	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	94027837	94027837	+	Silent	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tatggcaacacagtgtgtgtCcaggaaattttgcaacgttg	11	7	0	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ANKRD32-92	NM_032290	exon20	c.C2571A	p.V857V	GTGTGTCCAGGAA	.	145	37	146	1	.	0	0	0	0	0	A	94027837	C	A	94027837	2	1	31	1	0	0	0	0	0	0	0	1	660	842	30	3		3	ANKRD32	5	94027837	Silent	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	950684	94027837	86887423	786	6160										
MCTP1	79772	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	94206155	94206155	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ctgttttcctcttcaatgtaCttctgttctttgggtattaa	6	8	4	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MCTP1-92	NM_024717	exon16	c.G2283T	p.K761N	AATGTACTTCTGT	.	80	37	120	2	.	0	0	0	0	0	A	94206155	C	A	94206155	3	1	31	1	0	0	0	0	1	0	0	0	9428	564	20	3	748	3	MCTP1	5	94206155	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	178318	94206155	86709105	787	6161										
FAM81B	153643	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	94727146	94727146	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ctcagaaaaaagaaaaaaatCacagagattgtttttcaaaa	5	5	3	3	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FAM81B-92	NM_152548	exon1	c.C53T	p.S18L	AAAAATCACAGAG	.	123	26	129	0	.	0	0	0	0	0	T	94727146	C	T	94727146	3	4	31	1	0	0	0	0	1	0	0	0	5648	838	29	3	55	3	FAM81B	5	94727146	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	520991	94727146	86188114	788	6162										
FAM81B	153643	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	94772570	94772570	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cctcgaatttaaagatggtcCagggggattatcgccacgaa	11	9	0	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FAM81B-92	NM_152548	exon7	c.C853T	p.Q285X	ATGGTCCAGGGGG	.	103	50	94	0	.	0	0	0	0	0	T	94772570	C	T	94772570	4	4	31	1	0	0	0	0	0	1	0	0	5648	595	21	3	879	3	FAM81B	5	94772570	Nonsense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	45424	94772570	86142690	789	6163										
TTC37	9652	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	94852291	94852291	+	Splice_Site	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	aagggcataatttccaatacCtgaaaaatacaaaacctgat	5	8	0	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TTC37-94	NM_014639	exon25	c.2516-1G>A	.	CAATACCTGAAAA	.	108	51	126	0	.	0	0	0	0	0	T	94852291	C	T	94852291	5	4	31	1	0	0	0	0	0	0	1	0	16743	695	24	3	2259	3	TTC37	5	94852291	Splice_Site	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	79721	94852291	86062969	790	6164										
ARSK	153642	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	94901701	94901701	+	Splice_Site	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	attaaatttctttatttccaGgatggaaggttaacatttca	6	5	2	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ARSK-91	NM_198150	exon2	c.127-1G>T	.	TTTCCAGGATGGA	.	38	8	53	0	.	0	0	0	0	0	T	94901701	G	T	94901701	5	4	31	1	0	0	0	0	0	0	1	0	997	1014	35	3	132	3	ARSK	5	94901701	Splice_Site	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	49410	94901701	86013559	791	6165										
SPATA9	83890	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	95018555	95018555	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ccacccaacaggtttgattgGcatggtgagttcttgcttgg	12	9	1	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SPATA9-90	NM_031952	exon1	c.C4G	p.P2A	TGATTGGCATGGT	.	138	55	151	1	.	0	0	0	0	0	C	95018555	G	C	95018555	3	2	31	1	0	0	0	0	1	0	0	0	15053	1203	42	3	780	3	SPATA9	5	95018555	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	116854	95018555	85896705	792	6166										
SLCO6A1	133482	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	101794169	101794169	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	aaaaaaatgaagctgtttacGtttcctagcttttatccgtg	7	7	0	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SLCO6A1-96	NM_173488	exon6	c.C1048G	p.R350G	GTTTACGTTTCCT	.	52	20	38	0	.	0	0	0	0	0	C	101794169	G	C	101794169	3	2	31	1	0	0	0	0	1	0	0	0	14767	1145	40	2	1143	2	SLCO6A1	5	101794169	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	6775614	101794169	79121091	793	6167										
PPIP5K2	23262	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	102508858	102508858	+	Splice_Site	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tgtcatgtattttttgctcaGgaatatggtataactaaagc	8	5	2	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PPIP5K2-92	NM_001276277	exon20	c.2287-1G>T	.	TGCTCAGGAATAT	.	55	26	80	0	.	0	0	0	0	0	T	102508858	G	T	102508858	5	4	31	1	0	0	0	0	0	0	1	0	12365	1014	35	3	2360	3	PPIP5K2	5	102508858	Splice_Site	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	714689	102508858	78406402	794	6168										
APC	324	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	112175595	112175595	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	acaaaccatgccaccaagcaGaagtaaaacacctccaccac	4	16	0	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	APC-12026	NM_001127510	exon17	c.G4304C	p.R1435T	CAAGCAGAAGTAA	.	114	29	134	0	.	0	0	0	0	0	C	112175595	G	C	112175595	3	2	31	1	0	0	0	0	1	0	0	0	763	942	33	3	4362	3	APC	5	112175595	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	9666737	112175595	68739665	795	6169										
YTHDC2	64848	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	112899724	112899724	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tagcttatcgagatccttttGtactacctactcaggcctct	6	12	2	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	YTHDC2-92	NM_022828	exon20	c.G2611T	p.V871L	CCTTTTGTACTAC	.	145	56	136	0	.	0	0	0	0	0	T	112899724	G	T	112899724	3	4	31	1	0	0	0	0	1	0	0	0	17535	1377	48	3	2689	3	YTHDC2	5	112899724	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	724129	112899724	68015536	796	6170										
AQPEP	0	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	115318994	115318994	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tgtatttcagggccctgttaGcgtcccagctggaaccaaca	10	12	1	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_173800	exon2	c.G706A	p.A236T	CTGTTAGCGTCCC	.	174	88	258	0	.	0	0	0	0	0	A	115318994	G	A	115318994	3	1	31	1	0	0	0	0	1	0	0	0	834	971	34	3	712	3	AQPEP	5	115318994	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	2419270	115318994	65596266	797	6171										
SEMA6A	57556	broad.mit.edu;bcgsc.ca	37	chr5	115813810	115813821	+	In_Frame_Del	DEL	TGCCCATGATCC	TGCCCATGATCC	-													0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gcttgctctgtccagctgcaTgcccatgatccttttgtctt					novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SEMA6A-92	NM_020796	exon14	c.1457_1468del	p.486_490del	GCTGCATGCCCAT	.	144	11	203	0	.	0	0	0	0	0	-	115813821	TGCCCATGATCC	-	115813810	7	5	31	1	0	1	0	1	0	0	0	0	14074	1464	51	0	1648	0	SEMA6A	5	115813810	In_Frame_Del	DEL	TGCCCATGATCC	TCGA-OR-A5KB-01A-11D-A30A-10	494816	115813810	65101450	798	6172										
HSD17B4	3295	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	118809620	118809620	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cagtgaatgatttgggagggGacttcaaaggagttggtaaa	15	3	1	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	HSD17B4-92	NM_001199291	exon4	c.G205T	p.D69Y	GGAGGGGACTTCA	.	128	20	165	0	.	0	0	0	0	0	T	118809620	G	T	118809620	3	4	31	1	0	0	0	0	1	0	0	0	7407	1174	41	3	140	3	HSD17B4	5	118809620	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	2995810	118809620	62105640	799	6173										
MEGF10	84466	broad.mit.edu;ucsc.edu	37	chr5	126755743	126755743	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tcttgtcgcacaggctggcaCggggtggactgctccatcag	14	12	2	0	rs200050342	alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MEGF10-94	NM_032446	exon13	c.C1434A	p.H478Q	CTGGCACGGGGTG	.	95	16	98	2	C|1.000;T|0.000	0	0	0	0	0	A	126755743	C	A	126755743	3	1	31	1	0	0	0	0	1	0	0	0	9488	535	19	2	1476	2	MEGF10	5	126755743	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	7946123	126755743	54159517	800	6174										
MEGF10	84466	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	126769171	126769171	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	atggcatctgcgagtgtgcaCcaggcttccgaggcaccact	12	13	1	0	rs202135671	alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MEGF10-94	NM_032446	exon15	c.C1810G	p.P604A	TGTGCACCAGGCT	.	166	40	164	0	C|0.999;A|0.000	0	0	0	0	0	G	126769171	C	G	126769171	3	3	31	1	0	0	0	0	1	0	0	0	9488	507	18	3	1860	3	MEGF10	5	126769171	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	13428	126769171	54146089	801	6175										
FBN2	2201	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	127595479	127595479	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gaggttgaacttcatgttgaCggggctgtccatgtcgacac	13	9	1	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FBN2-146	NM_001999	exon65	c.G8407T	p.V2803F	TGTTGACGGGGCT	.	127	22	145	0	.	0	0	0	0	0	A	127595479	C	A	127595479	3	1	31	1	0	0	0	0	1	0	0	0	5722	536	19	2	335	2	FBN2	5	127595479	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	826308	127595479	53319781	802	6176										
FBN2	2201	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	127640733	127640733	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ttgcagatcaacacacaagcCatgactgcaaacgttaggaa	8	10	1	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FBN2-146	NM_001999	exon45	c.G5716T	p.G1906C	ACAAGCCATGACT	.	199	38	209	0	.	0	0	0	0	0	A	127640733	C	A	127640733	3	1	31	1	0	0	0	0	1	0	0	0	5722	594	21	3	3106	3	FBN2	5	127640733	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	45254	127640733	53274527	803	6177										
FBN2	2201	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	127782257	127782257	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ccactgtattgatacagtttCctccttggcatatccctggg	8	12	0	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FBN2-146	NM_001999	exon7	c.G869T	p.G290V	CAGTTTCCTCCTT	.	77	11	83	0	.	0	0	0	0	0	A	127782257	C	A	127782257	3	1	31	1	0	0	0	0	1	0	0	0	5722	855	30	3	8105	3	FBN2	5	127782257	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	141524	127782257	53133003	804	6178										
FBN2	2201	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	127800433	127800433	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tcaccttggcaagctccagtGcggatgttggggatgaaacc	13	10	1	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FBN2-146	NM_001999	exon6	c.C810A	p.R270R	TCCAGTGCGGATG	.	45	16	61	0	.	0	0	0	0	0	T	127800433	G	T	127800433	2	4	31	1	0	0	0	0	0	0	0	1	5722	1306	46	3		3	FBN2	5	127800433	Silent	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	18176	127800433	53114827	805	6179										
SLC27A6	28965	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	128302151	128302151	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tctctgaaaaagggggacacGgtggctctgctgatgagcaa	14	8	2	3	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SLC27A6-90	NM_001017372	exon1	c.G321T	p.T107T	GGACACGGTGGCT	.	86	37	105	0	.	0	0	0	0	0	T	128302151	G	T	128302151	2	4	31	1	0	0	0	0	0	0	0	1	14565	1103	39	2		2	SLC27A6	5	128302151	Silent	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	501718	128302151	52613109	806	6180										
LYRM7	90624	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	130522733	130522733	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cttaacagctaatgaaaataGgttctgatgttgaattatta	7	4	1	3	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	LYRM7-68	NM_181705	exon4	c.G175T	p.G59C	AAAATAGGTTCTG	.	126	29	143	1	.	0	0	0	0	0	T	130522733	G	T	130522733	3	4	31	1	0	0	0	0	1	0	0	0	9151	1000	35	3	189	3	LYRM7	5	130522733	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	2220582	130522733	50392527	807	6181										
RAD50	10111	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	131940656	131940656	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	aggagcagactgtggaattaTccactgaagttcagtctttg	11	7	2	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	RAD50-229	NM_005732	exon16	c.T2683C	p.S895P	GAATTATCCACTG	.	170	33	196	0	.	0	0	0	0	0	C	131940656	T	C	131940656	3	2	31	1	0	0	0	0	1	0	0	0	13019	1435	50	4	2745	4	RAD50	5	131940656	Missense_Mutation	SNP	T	TCGA-OR-A5KB-01A-11D-A30A-10	1417923	131940656	48974604	808	6182										
SHROOM1	134549	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	132160321	132160321	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	aattacctggctgggggcccCtgggaggcatgggggtctgg	19	9	1	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SHROOM1-91	NM_133456	exon3	c.G1227T	p.Q409H	GGGCCCCTGGGAG	.	103	50	103	0	.	0	0	0	0	0	A	132160321	C	A	132160321	3	1	31	1	0	0	0	0	1	0	0	0	14328	680	24	3	1351	3	SHROOM1	5	132160321	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	219665	132160321	48754939	809	6183										
GDF9	2661	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	132199862	132199862	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tccaggagcctgcttgtgccGggtacagggggtgaagagcc	17	10	0	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GDF9-227	NM_005260	exon1	c.C364T	p.R122W	TGTGCCGGGTACA	.	135	23	156	1	.	0	0	0	0	0	A	132199862	G	A	132199862	3	1	31	1	0	0	0	0	1	0	0	0	6339	1115	39	1	1008	1	GDF9	5	132199862	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	39541	132199862	48715398	810	6184										
TXNDC15	79770	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	134235224	134235224	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ggtaactcaagccgaccaaaTaggccctcttcccagcactt	7	15	2	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TXNDC15-154	NM_024715	exon5	c.T932A	p.I311K	ACCAAATAGGCCC	.	89	18	63	0	.	0	0	0	0	0	A	134235224	T	A	134235224	3	1	31	1	0	0	0	0	1	0	0	0	16832	1406	49	5	950	5	TXNDC15	5	134235224	Missense_Mutation	SNP	T	TCGA-OR-A5KB-01A-11D-A30A-10	2035362	134235224	46680036	811	6185										
TRPC7	57113	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	135692848	135692848	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tgcagagcgttctgccccatGtagtccacacagttgaagtt	10	11	1	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_001167576	exon2	c.C228G	p.Y76X	CCCCATGTAGTCC	.	167	28	158	0	.	0	0	0	0	0	C	135692848	G	C	135692848	4	2	31	1	0	0	0	0	0	1	0	0	16622	1372	48	3	2404	3	TRPC7	5	135692848	Nonsense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	1457624	135692848	45222412	812	6186										
TRPC7	57113	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	135692905	135692905	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tccagcattttccggaccacCgggatgttgccatactcagc	9	14	1	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_001167576	exon2	c.G171T	p.P57P	GACCACCGGGATG	.	150	33	158	1	.	0	0	0	0	0	A	135692905	C	A	135692905	2	1	31	1	0	0	0	0	0	0	0	1	16622	639	23	2		2	TRPC7	5	135692905	Silent	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	57	135692905	45222355	813	6187										
EGR1	1958	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	137802588	137802588	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	aacagtggcaacaccttgtgGcccgagcccctcttcagctt	9	15	2	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	EGR1-227	NM_001964	exon2	c.G450T	p.W150C	CTTGTGGCCCGAG	.	109	17	106	0	.	0	0	0	0	0	T	137802588	G	T	137802588	3	4	31	1	0	0	0	0	1	0	0	0	4982	1212	42	3	456	3	EGR1	5	137802588	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	2109683	137802588	43112672	814	6188										
PCDHA1	56147	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	140167127	140167127	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gcgccctggatcgcgagagcCtgtcggtctatgagctggtg	16	11	1	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PCDHA1-23	NM_031411	exon1	c.C1252T	p.L418L	GAGAGCCTGTCGG	.	245	60	132	0	.	0	0	0	0	0	T	140167127	C	T	140167127	2	4	31	1	0	0	0	0	0	0	0	1	11548	680	24	3		3	PCDHA1	5	140167127	Silent	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	2364539	140167127	40748133	815	6189										
PCDHA2	56146	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	140176290	140176290	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ctggcgcagtgagtgagctgGtgccgtggtcggtgggtgca	20	8	0	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PCDHA2-94	NM_031495	exon1	c.G1741C	p.V581L	GAGCTGGTGCCGT	.	412	98	90	0	.	0	0	0	0	0	C	140176290	G	C	140176290	3	2	31	1	0	0	0	0	1	0	0	0	11553	1261	44	3	1743	3	PCDHA2	5	140176290	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	9163	140176290	40738970	816	6190										
PCDHA3	56145	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	140181421	140181421	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	aagcattatttactaataacAgcaattgatggtgggaaacc	8	6	0	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PCDHA3-98	NM_031497	exon1	c.A639T	p.T213T	AATAACAGCAATT	.	51	24	71	0	.	0	0	0	0	0	T	140181421	A	T	140181421	2	4	31	1	0	0	0	0	0	0	0	1	11554	175	7	5		5	PCDHA3	5	140181421	Silent	SNP	A	TCGA-OR-A5KB-01A-11D-A30A-10	5131	140181421	40733839	817	6191										
PCDHA4	56144	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	140187138	140187138	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gttttccatgtggacgtggaGgtgagggacattaacgataa	14	5	0	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PCDHA4-96	NM_031500	exon1	c.G366A	p.E122E	CGTGGAGGTGAGG	.	234	59	263	0	.	0	0	0	0	0	A	140187138	G	A	140187138	2	1	31	1	0	0	0	0	0	0	0	1	11555	991	35	3		3	PCDHA4	5	140187138	Silent	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	5717	140187138	40728122	818	6192										
PCDHA6	56142	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	140208235	140208235	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tagatgtgaaaataaacagtGatgacaataaacaaattggg	9	3	0	4	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PCDHA6-92	NM_031849	exon1	c.G559A	p.D187N	AACAGTGATGACA	.	118	27	111	1	.	0	0	0	0	0	A	140208235	G	A	140208235	3	1	31	1	0	0	0	0	1	0	0	0	11557	1290	45	3	561	3	PCDHA6	5	140208235	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	21097	140208235	40707025	819	6193										
PCDHA8	56140	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	140223235	140223235	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tggccttcagcccctgccttCctcctgatctgggatcagtt	9	15	3	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PCDHA8-92	NM_031856	exon1	c.C2329A	p.P777T	TGCCTTCCTCCTG	.	490	102	475	0	.	0	0	0	0	0	A	140223235	C	A	140223235	3	1	31	1	0	0	0	0	1	0	0	0	11559	855	30	3	2331	3	PCDHA8	5	140223235	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	15000	140223235	40692025	820	6194										
PCDHA10	56139	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	140237814	140237814	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tgctcggcggcgcccaccgaGggcgcatgtgggccggtgaa	18	13	0	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PCDHA10-99	NM_031859	exon1	c.G2181T	p.E727D	CACCGAGGGCGCA	.	309	164	73	1	.	0	0	0	0	0	T	140237814	G	T	140237814	3	4	31	1	0	0	0	0	1	0	0	0	11549	991	35	3	2183	3	PCDHA10	5	140237814	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	14579	140237814	40677446	821	6195										
PCDHA11	56138	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	140249406	140249406	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tggatgtcaacgacaatgatCcagagtttgataaatcagaa	9	6	2	4	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PCDHA11-67	NM_018902	exon1	c.C718A	p.P240T	AATGATCCAGAGT	.	153	66	156	0	.	0	0	0	0	0	A	140249406	C	A	140249406	3	1	31	1	0	0	0	0	1	0	0	0	11550	855	30	3	720	3	PCDHA11	5	140249406	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	11592	140249406	40665854	822	6196										
PCDHB1	29930	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	140433080	140433080	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gagccctacctgcagttccaGgatccaaccaagcattctag	8	14	1	0	rs36090285	byfrequency;alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PCDHB1-90	NM_013340	exon1	c.G2025C	p.Q675H	GTTCCAGGATCCA	.	150	73	191	0	G|0.995;A|0.005	0	0	0	0	0	C	140433080	G	C	140433080	3	2	31	1	0	0	0	0	1	0	0	0	11563	991	35	3	2027	3	PCDHB1	5	140433080	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	183674	140433080	40482180	823	6197										
PCDHB4	56131	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	140502574	140502574	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gcctttctggaaaaggcactGtagtcatagaggtggtggat	14	6	2	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PCDHB4-93	NM_018938	exon1	c.G994A	p.V332I	GGCACTGTAGTCA	.	157	63	175	0	.	0	0	0	0	0	A	140502574	G	A	140502574	3	1	31	1	0	0	0	0	1	0	0	0	11573	1377	48	3	996	3	PCDHB4	5	140502574	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	69494	140502574	40412686	824	6198										
PCDHB16	57717	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	140562215	140562215	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ctgagcttgtctggggcgggCgccgagttggggtcctattc	17	10	1	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PCDHB16-92	NM_020957	exon1	c.C81T	p.G27G	GGCGGGCGCCGAG	.	130	46	140	0	.	0	0	0	0	0	T	140562215	C	T	140562215	2	4	31	1	0	0	0	0	0	0	0	1	11570	755	27	1		1	PCDHB16	5	140562215	Silent	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	59641	140562215	40353045	825	6199										
PCDHB16	57717	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr5	140562775	140562775	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	actaagattaaccctgacagCgctggatggtggctctccac	10	12	1	2	rs139379718	byfrequency;alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PCDHB16-92	NM_020957	exon1	c.C641G	p.A214G	TGACAGCGCTGGA	.	65	13	88	0	C|0.997;T|0.003	0	0	0	0	0	G	140562775	C	G	140562775	3	3	31	1	0	0	0	0	1	0	0	0	11570	768	27	2	643	2	PCDHB16	5	140562775	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	560	140562775	40352485	826	6200										
PCDHB16	57717	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	140562794	140562794	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gcgctggatggtggctctccAccgcgatctggaactgctca	13	13	3	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PCDHB16-92	NM_020957	exon1	c.A660T	p.P220P	CTCTCCACCGCGA	.	73	12	94	0	.	0	0	0	0	0	T	140562794	A	T	140562794	2	4	31	1	0	0	0	0	0	0	0	1	11570	146	6	5		5	PCDHB16	5	140562794	Silent	SNP	A	TCGA-OR-A5KB-01A-11D-A30A-10	19	140562794	40352466	827	6201										
PCDHB16	57717	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	chr5	140563800	140563800	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tgctggtgctggacgccaacGacaactcgcccttcgtgctg	12	14	0	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PCDHB16-92	NM_020957	exon1	c.G1666T	p.D556Y	GCCAACGACAACT	.	222	90	22	0	.	0	0	0	0	0	T	140563800	G	T	140563800	3	4	31	1	0	0	0	0	1	0	0	0	11570	1058	37	2	1668	2	PCDHB16	5	140563800	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	1006	140563800	40351460	828	6202										
PCDHB10	56126	broad.mit.edu;mdanderson.org	37	chr5	140573502	140573502	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	caaacctcctacaccctgttCgtccgcgagaacaacagccc	6	18	0	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PCDHB10-92	NM_018930	exon1	c.C1377A	p.F459L	CCTGTTCGTCCGC	.	134	34	86	0	.	0	0	0	0	0	A	140573502	C	A	140573502	3	1	31	1	0	0	0	0	1	0	0	0	11564	883	31	2	1379	2	PCDHB10	5	140573502	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	9702	140573502	40341758	829	6203										
PCDHB10	56126	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	chr5	140573565	140573565	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	agcgccacagacagagactcGggcaccaacgcccaggtcac	11	16	1	2	rs61741789	byfrequency;alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PCDHB10-92	NM_018930	exon1	c.G1440T	p.S480S	AGACTCGGGCACC	.	241	63	141	0	G|0.680;A|0.320	0	0	0	0	0	T	140573565	G	T	140573565	2	4	31	1	0	0	0	0	0	0	0	1	11564	1103	39	2		2	PCDHB10	5	140573565	Silent	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	63	140573565	40341695	830	6204										
PCDHB10	56126	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	140574448	140574448	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tcttgaaaccagttatttcgGatattcaggcacagggccct	9	10	2	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PCDHB10-92	NM_018930	exon1	c.G2323T	p.D775Y	ATTTCGGATATTC	.	141	55	172	0	.	0	0	0	0	0	T	140574448	G	T	140574448	3	4	31	1	0	0	0	0	1	0	0	0	11564	1174	41	3	2325	3	PCDHB10	5	140574448	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	883	140574448	40340812	831	6205										
PCDHB13	56123	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	140595009	140595009	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ataacacagctcaatatgacCgtgctgatcgccgatgtcaa	8	11	2	2	rs201145725	alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PCDHB13-93	NM_018933	exon1	c.C1314G	p.T438T	TATGACCGTGCTG	.	227	46	235	0	C|0.999;T|0.000	0	0	0	0	0	G	140595009	C	G	140595009	2	3	31	1	0	0	0	0	0	0	0	1	11567	639	23	2		2	PCDHB13	5	140595009	Silent	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	20561	140595009	40320251	832	6206										
PCDHB13	56123	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	140595284	140595284	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cctgcaggggttccagttccGcgtgggcgcttcagaccacg	14	14	1	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PCDHB13-93	NM_018933	exon1	c.G1589T	p.R530L	AGTTCCGCGTGGG	.	443	198	184	1	.	0	0	0	0	0	T	140595284	G	T	140595284	3	4	31	1	0	0	0	0	1	0	0	0	11567	1087	38	2	1591	2	PCDHB13	5	140595284	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	275	140595284	40319976	833	6207										
PCDHB14	56122	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	140604121	140604121	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gacaacccaccagaagtgacCatatcgtcgattacaaagag	8	11	0	3	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PCDHB14-91	NM_018934	exon1	c.C1044A	p.T348T	AGTGACCATATCG	.	76	11	81	0	.	0	0	0	0	0	A	140604121	C	A	140604121	2	1	31	1	0	0	0	0	0	0	0	1	11568	581	21	3		3	PCDHB14	5	140604121	Silent	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	8837	140604121	40311139	834	6208										
PCDHB15	56121	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	140625197	140625197	+	Silent	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	caaaggcaagtcctgattctCcttcttttactggaagtgac	8	10	2	2	rs149965698	byfrequency;alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PCDHB15-156	NM_018935	exon1	c.C51A	p.L17L	GATTCTCCTTCTT	.	64	30	66	1	C|1.000;T|0.000	0	0	0	0	0	A	140625197	C	A	140625197	2	1	31	1	0	0	0	0	0	0	0	1	11569	842	30	3		3	PCDHB15	5	140625197	Silent	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	21076	140625197	40290063	835	6209										
PCDHGA1	56114	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	140710828	140710828	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ccgatgggcctcaacatccaGagatggtgctgcagagtccc	12	13	1	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PCDHGA1-137	NM_018912	exon1	c.G577C	p.E193Q	CATCCAGAGATGG	.	89	20	99	0	.	0	0	0	0	0	C	140710828	G	C	140710828	3	2	31	1	0	0	0	0	1	0	0	0	11579	943	33	3	579	3	PCDHGA1	5	140710828	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	85631	140710828	40204432	836	6210										
PCDHGA2	56113	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	140720729	140720729	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tgctgcaggcttcaggaggcAgcttgacaggcatgcagagc	15	10	1	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PCDHGA2-71	NM_018915	exon1	c.A2191T	p.S731C	GGAGGCAGCTTGA	.	209	93	191	1	.	0	0	0	0	0	T	140720729	A	T	140720729	3	4	31	1	0	0	0	0	1	0	0	0	11583	188	7	5	2193	5	PCDHGA2	5	140720729	Missense_Mutation	SNP	A	TCGA-OR-A5KB-01A-11D-A30A-10	9901	140720729	40194531	837	6211										
PCDHGA2	56113	broad.mit.edu;bcgsc.ca	37	chr5	140720802	140720802	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tttcctgcagacctattcccAcgaggtctccctcactgcgg	8	16	2	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PCDHGA2-71	NM_018915	exon1	c.A2264T	p.H755L	ATTCCCACGAGGT	.	199	81	186	2	.	0	0	0	0	0	T	140720802	A	T	140720802	3	4	31	1	0	0	0	0	1	0	0	0	11583	159	6	5	2266	5	PCDHGA2	5	140720802	Missense_Mutation	SNP	A	TCGA-OR-A5KB-01A-11D-A30A-10	73	140720802	40194458	838	6212										
PCDHGA3	56112	broad.mit.edu;mdanderson.org	37	chr5	140725478	140725478	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ggtctgcacacgggcgaggtGcgcacggcgcgagccctgct	17	14	1	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PCDHGA3-68	NM_032011	exon1	c.G1878T	p.V626V	CGAGGTGCGCACG	.	435	69	74	0	.	0	0	0	0	0	T	140725478	G	T	140725478	2	4	31	1	0	0	0	0	0	0	0	1	11584	1306	46	3		3	PCDHGA3	5	140725478	Silent	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	4676	140725478	40189782	839	6213										
PCDHGB1	56104	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	140730366	140730366	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	atacttctctctgtcaacgaAggaaagtcctgatggaagta	9	8	3	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PCDHGB1-33	NM_018922	exon1	c.A539T	p.K180M	CAACGAAGGAAAG	.	122	36	170	1	.	0	0	0	0	0	T	140730366	A	T	140730366	3	4	31	1	0	0	0	0	1	0	0	0	11591	72	3	5	541	5	PCDHGB1	5	140730366	Missense_Mutation	SNP	A	TCGA-OR-A5KB-01A-11D-A30A-10	4888	140730366	40184894	840	6214										
PCDHGB1	56104	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	140731133	140731133	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cctccaggacaagcatcaccCtgcacatctccgacatcaac	5	18	3	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PCDHGB1-33	NM_018922	exon1	c.C1306A	p.L436M	ATCACCCTGCACA	.	161	76	170	0	.	0	0	0	0	0	A	140731133	C	A	140731133	3	1	31	1	0	0	0	0	1	0	0	0	11591	680	24	3	1308	3	PCDHGB1	5	140731133	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	767	140731133	40184127	841	6215										
PCDHGB1	56104	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	140731260	140731260	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cgcctccgacccggatttggGacccaacggcagagtctcct	11	16	1	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PCDHGB1-33	NM_018922	exon1	c.G1433T	p.G478V	ATTTGGGACCCAA	.	120	71	127	0	.	0	0	0	0	0	T	140731260	G	T	140731260	3	4	31	1	0	0	0	0	1	0	0	0	11591	1174	41	3	1435	3	PCDHGB1	5	140731260	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	127	140731260	40184000	842	6216										
PCDHGA5	56110	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	140744142	140744142	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tgccctgaacccgcgaagcgGcagcttggtcaccgcgggca	14	15	1	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PCDHGA5-35	NM_032054	exon1	c.G245T	p.G82V	GAAGCGGCAGCTT	.	113	30	119	0	.	0	0	0	0	0	T	140744142	G	T	140744142	3	4	31	1	0	0	0	0	1	0	0	0	11586	1203	42	3	247	3	PCDHGA5	5	140744142	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	12882	140744142	40171118	843	6217										
PCDHGA5	56110	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	140745589	140745589	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	aatacgcctgagatcctgtaCcccgccctccccacagacgg	8	18	0	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PCDHGA5-35	NM_032054	exon1	c.C1692T	p.Y564Y	CCTGTACCCCGCC	.	235	96	247	0	.	0	0	0	0	0	T	140745589	C	T	140745589	2	4	31	1	0	0	0	0	0	0	0	1	11586	518	18	3		3	PCDHGA5	5	140745589	Silent	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	1447	140745589	40169671	844	6218										
PCDHGA6	56109	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	140753654	140753654	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ttcctaataagccagtaatgGcgcctccgcagaggcatccg	10	13	0	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PCDHGA6-67	NM_018919	exon1	c.G4T	p.A2S	GTAATGGCGCCTC	.	215	46	161	0	.	0	0	0	0	0	T	140753654	G	T	140753654	3	4	31	1	0	0	0	0	1	0	0	0	11587	1203	42	3	6	3	PCDHGA6	5	140753654	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	8065	140753654	40161606	845	6219										
PCDHGA7	56108	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	140762550	140762550	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	accccctgggaagcctgggcAggacgtattctctactccgt	11	14	1	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_032087	exon1	c.A84G	p.A28A	CTGGGCAGGACGT	.	119	26	97	0	.	0	0	0	0	0	G	140762550	A	G	140762550	2	3	31	1	0	0	0	0	0	0	0	1	11588	175	7	4		4	PCDHGA7	5	140762550	Silent	SNP	A	TCGA-OR-A5KB-01A-11D-A30A-10	8896	140762550	40152710	846	6220										
PCDHGA8	9708	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	140773971	140773971	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	agatccgagacctgcagctaCtggtaacagccagcgacagc	11	13	0	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_014004	exon1	c.C1591A	p.L531M	CAGCTACTGGTAA	.	216	86	220	1	.	0	0	0	0	0	A	140773971	C	A	140773971	3	1	31	1	0	0	0	0	1	0	0	0	11589	564	20	3	1593	3	PCDHGA8	5	140773971	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	11421	140773971	40141289	847	6221										
PCDHGA9	56107	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	140782720	140782720	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gagcgccgagtccgcatcgtCtctagaggtaggacgcagct	14	12	1	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_032089	exon1	c.C201T	p.V67V	CATCGTCTCTAGA	.	91	22	94	0	.	0	0	0	0	0	T	140782720	C	T	140782720	2	4	31	1	0	0	0	0	0	0	0	1	11590	900	32	3		3	PCDHGA9	5	140782720	Silent	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	8749	140782720	40132540	848	6222										
PCDHGA9	56107	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	140783342	140783342	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	acctggatgagggaatcaacGgaaaagtggcatacaaattc	11	7	1	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_032089	exon1	c.G823C	p.G275R	ATCAACGGAAAAG	.	92	19	112	0	.	0	0	0	0	0	C	140783342	G	C	140783342	3	2	31	1	0	0	0	0	1	0	0	0	11590	1117	39	2	825	2	PCDHGA9	5	140783342	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	622	140783342	40131918	849	6223										
PCDHGB7	56099	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	140798387	140798387	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gatatacgataaacatagaaGcaaaagaccgaggatctctc	8	8	1	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PCDHGB7-29	NM_018927	exon1	c.G961T	p.A321S	ATAGAAGCAAAAG	.	128	20	162	0	.	0	0	0	0	0	T	140798387	G	T	140798387	3	4	31	1	0	0	0	0	1	0	0	0	11597	971	34	3	963	3	PCDHGB7	5	140798387	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	15045	140798387	40116873	850	6224										
PCDHGA12	26025	bcgsc.ca	37	chr5	140812559	140812559	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cgcactttgtgggcgtggacGgggtgcaggctttcctgcag	17	10	0	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PCDHGA12-27	NM_032094	exon1	c.G2233T	p.G745W	GTGGACGGGGTGC	.	128	57	108	3	.	0	0	0	0	0	T	140812559	G	T	140812559	3	4	31	1	0	0	0	0	1	0	0	0	11582	1116	39	2	2235	2	PCDHGA12	5	140812559	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	14172	140812559	40102701	851	6225										
YIPF5	81555	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	143541849	143541849	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	aagacaatatccaaggacacTtgccacacaaccaaatgaaa	5	11	0	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	YIPF5-92	NM_001024947	exon5	c.A544T	p.S182C	GGACACTTGCCAC	.	410	107	414	0	.	0	0	0	0	0	A	143541849	T	A	143541849	3	1	31	1	0	0	0	0	1	0	0	0	17519	1609	56	5	237	5	YIPF5	5	143541849	Missense_Mutation	SNP	T	TCGA-OR-A5KB-01A-11D-A30A-10	2729290	143541849	37373411	852	6226										
KCTD16	57528	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	143853384	143853384	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	aggagacggtcatctgtggtCccgtgacacgccagaccaac	12	13	2	3	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	KCTD16-137	NM_020768	exon4	c.C994G	p.P332A	TGTGGTCCCGTGA	.	413	68	418	1	.	0	0	0	0	0	G	143853384	C	G	143853384	3	3	31	1	0	0	0	0	1	0	0	0	8124	855	30	3	1000	3	KCTD16	5	143853384	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	311535	143853384	37061876	853	6227										
LARS	51520	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	145509683	145509683	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	aacacaagttctctgtgcatCccttccacagccaattcacg	5	15	2	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	LARS-90	NM_020117	exon25	c.G2526A	p.G842G	GTGCATCCCTTCC	.	77	37	104	0	.	0	0	0	0	0	T	145509683	C	T	145509683	2	4	31	1	0	0	0	0	0	0	0	1	8656	842	30	3		3	LARS	5	145509683	Silent	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	1656299	145509683	35405577	854	6228										
SH3TC2	79628	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	148406710	148406710	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cctcctgggctctgttcaagGcccgaagatagctcttggct	11	13	3	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SH3TC2-92	NM_024577	exon11	c.C2585A	p.A862D	TTCAAGGCCCGAA	.	138	53	182	0	.	0	0	0	0	0	T	148406710	G	T	148406710	3	4	31	1	0	0	0	0	1	0	0	0	14297	1203	42	3	1309	3	SH3TC2	5	148406710	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	2897027	148406710	32508550	855	6229										
SH3TC2	79628	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	148407036	148407036	+	Silent	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cacagggccctctgggtgctCcggtctgctagttcctcaca	11	15	3	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SH3TC2-92	NM_024577	exon11	c.G2259T	p.R753R	GGTGCTCCGGTCT	.	217	43	237	0	.	0	0	0	0	0	A	148407036	C	A	148407036	2	1	31	1	0	0	0	0	0	0	0	1	14297	842	30	3		3	SH3TC2	5	148407036	Silent	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	326	148407036	32508224	856	6230										
PCYOX1L	78991	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	148745675	148745675	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tgtcgtttctgctgtcctgcGggccagctatggccagtcag	13	12	2	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PCYOX1L-91	NM_024028	exon4	c.G641T	p.R214L	TCCTGCGGGCCAG	.	71	34	72	0	.	0	0	0	0	0	T	148745675	G	T	148745675	3	4	31	1	0	0	0	0	1	0	0	0	11638	1116	39	2	655	2	PCYOX1L	5	148745675	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	338639	148745675	32169585	857	6231										
ARHGEF37	389337	bcgsc.ca	37	chr5	149011699	149011699	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gaggggttatgtgccttctgGcttcttggccagggctcgga	16	9	2	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ARHGEF37-90	NM_001001669	exon13	c.G1973T	p.G658V	CTTCTGGCTTCTT	.	267	77	217	4	.	0	0	0	0	0	T	149011699	G	T	149011699	3	4	31	1	0	0	0	0	1	0	0	0	906	1203	42	3	2019	3	ARHGEF37	5	149011699	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	266024	149011699	31903561	858	6232										
PDGFRB	5159	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	149505087	149505087	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tccacgtagatgtactcatgGccgtcagagctcacagactc	9	13	3	3	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PDGFRB-1499	NM_002609	exon12	c.C1728G	p.G576G	CTCATGGCCGTCA	.	339	92	245	0	.	0	0	0	0	0	C	149505087	G	C	149505087	2	2	31	1	0	0	0	0	0	0	0	1	11691	1190	42	3		3	PDGFRB	5	149505087	Silent	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	493388	149505087	31410173	859	6233										
CCDC69	26112	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	150565009	150565009	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ttccatgaggatcagccgccTgtccagctcatgaatacgct	9	13	2	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CCDC69-92	NM_015621	exon7	c.A589T	p.R197W	GCCGCCTGTCCAG	.	139	60	113	0	.	0	0	0	0	0	A	150565009	T	A	150565009	3	1	31	1	0	0	0	0	1	0	0	0	2847	1579	55	5	313	5	CCDC69	5	150565009	Missense_Mutation	SNP	T	TCGA-OR-A5KB-01A-11D-A30A-10	1059922	150565009	30350251	860	6234										
SLC36A2	153201	bcgsc.ca	37	chr5	150696572	150696572	+	Missense_Mutation	SNP	G	G	C													0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	caggagcggtgggatgatgaGggccagggcggtgccactca					novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SLC36A2-91	NM_181776	exon10	c.C1258G	p.L420V	TGATGAGGGCCAG	.	175	52	116	2	.	0	0	0	0	0	C	150696572	G	C	150696572	3	2	31	1	0	0	0	0	1	0	0	0	14629	1000	35	3	197	3	SLC36A2	5	150696572	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	131563	150696572	30218688	861	6235	59	2								
SLC36A2	153201	ucsc.edu;bcgsc.ca	37	chr5	150696573	150696573	+	Silent	SNP	G	G	T													0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	aggagcggtgggatgatgagGgccagggcggtgccactcac					novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SLC36A2-91	NM_181776	exon10	c.C1257A	p.A419A	GATGAGGGCCAGG	.	173	48	116	2	.	0	0	0	0	0	T	150696573	G	T	150696573	2	4	31	1	0	0	0	0	0	0	0	1	14629	1219	43	3		3	SLC36A2	5	150696573	Silent	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	1	150696573	30218687	862	6236	59	2								
FAT2	2196	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	150925322	150925322	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cttctttgtcactgtcagagGcatgaatcacaaaggggttg	11	8	4	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FAT2-96	NM_001447	exon9	c.C5366A	p.A1789D	TCAGAGGCATGAA	.	86	43	75	0	.	0	0	0	0	0	T	150925322	G	T	150925322	3	4	31	1	0	0	0	0	1	0	0	0	5709	1203	42	3	7743	3	FAT2	5	150925322	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	228749	150925322	29989938	863	6237										
KIF4B	285643	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	154396953	154396953	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	atgtgtgacatggagcaggtGctgtcaaagaagactgctcc	13	8	1	3	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	KIF4B-1	NM_001099293	exon1	c.G3534T	p.V1178V	GCAGGTGCTGTCA	.	224	61	162	0	.	0	0	0	0	0	T	154396953	G	T	154396953	2	4	31	1	0	0	0	0	0	0	0	1	8325	1306	46	3		3	KIF4B	5	154396953	Silent	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	3471631	154396953	26518307	864	6238										
TIMD4	91937	bcgsc.ca	37	chr5	156378664	156378664	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tgtcatctggagtggtgttcCggttgtgagatcgggtgtgg	18	5	2	1	rs145234048	byfrequency	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TIMD4-92	NM_138379	exon3	c.G538A	p.G180R	GTGTTCCGGTTGT	.	956	415	721	6	C|0.999;T|0.001	0	0	0	0	0	T	156378664	C	T	156378664	3	4	31	1	0	0	0	0	1	0	0	0	15940	661	23	1	626	1	TIMD4	5	156378664	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	1981711	156378664	24536596	865	6239										
ADAM19	8728	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	156997966	156997966	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ataagttcatgctgcagcttGgggctgccttcctcacttcc	9	13	2	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ADAM19-294	NM_033274	exon2	c.C117T	p.P39P	CAGCTTGGGGCTG	.	122	52	69	0	.	0	0	0	0	0	A	156997966	G	A	156997966	2	1	31	1	0	0	0	0	0	0	0	1	240	1335	47	3		3	ADAM19	5	156997966	Silent	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	619302	156997966	23917294	866	6240										
EBF1	1879	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	158139314	158139314	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tcggcacgtacccgtgtggtGatacgctgcttgagttgcgg	15	10	0	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	EBF1-92	NM_024007	exon14	c.C1397A	p.S466X	TGTGGTGATACGC	.	236	103	189	0	.	0	0	0	0	0	T	158139314	G	T	158139314	4	4	31	1	0	0	0	0	0	1	0	0	4891	1294	45	3	390	3	EBF1	5	158139314	Nonsense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	1141348	158139314	22775946	867	6241										
GABRA1	2554	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	161322775	161322775	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gattggtttattgccgtgtgCtatgcctttgtgttctcagc	11	8	1	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GABRA1-93	NM_001127644	exon9	c.C960G	p.C320W	CGTGTGCTATGCC	.	272	126	237	2	.	0	0	0	0	0	G	161322775	C	G	161322775	3	3	31	1	0	0	0	0	1	0	0	0	6179	805	28	3	990	3	GABRA1	5	161322775	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	3183461	161322775	19592485	868	6242										
GABRG2	2566	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	161576148	161576148	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ctgacaatgaccaccctcagCaccattgcccggaaatcgct	7	16	1	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GABRG2-95	NM_198903	exon9	c.C1077G	p.S359R	CCTCAGCACCATT	.	172	39	116	0	.	0	0	0	0	0	G	161576148	C	G	161576148	3	3	31	1	0	0	0	0	1	0	0	0	6191	709	25	3	1111	3	GABRG2	5	161576148	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	253373	161576148	19339112	869	6243										
CCNG1	900	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	162869514	162869514	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gggcgtactgcacggcaattGaagcatagctactacagaat	11	9	0	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CCNG1-725	NM_199246	exon7	c.G831A	p.L277L	GCAATTGAAGCAT	.	205	76	211	1	.	0	0	0	0	0	A	162869514	G	A	162869514	2	1	31	1	0	0	0	0	0	0	0	1	2929	1281	45	3		3	CCNG1	5	162869514	Silent	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	1293366	162869514	18045746	870	6244										
DOCK2	1794	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	169141144	169141144	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gagctccagcagtgttggggGgctttctgtcagctcccggg	16	11	2	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DOCK2-97	NM_004946	exon18	c.G1772T	p.G591V	TTGGGGGGCTTTC	.	187	102	111	1	.	0	0	0	0	0	T	169141144	G	T	169141144	3	4	31	1	0	0	0	0	1	0	0	0	4698	1232	43	3	1842	3	DOCK2	5	169141144	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	6271630	169141144	11774116	871	6245										
DOCK2	1794	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	169461501	169461501	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ggagaagctgctggattaccGgggtgtgatgacagatgaga	17	5	0	5	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DOCK2-97	NM_004946	exon35	c.G3566T	p.R1189L	ATTACCGGGGTGT	.	169	87	113	0	.	0	0	0	0	0	T	169461501	G	T	169461501	3	4	31	1	0	0	0	0	1	0	0	0	4698	1116	39	2	3704	2	DOCK2	5	169461501	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	320357	169461501	11453759	872	6246										
FOXI1	2299	broad.mit.edu;bcgsc.ca	37	chr5	169533089	169533089	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ccacccacagggcgtgcccaGccctcagcggccctccttcg	10	21	1	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FOXI1-229	NM_012188	exon1	c.G128T	p.S43I	TGCCCAGCCCTCA	.	345	102	166	1	.	0	0	0	0	0	T	169533089	G	T	169533089	3	4	31	1	0	0	0	0	1	0	0	0	6028	971	34	3	130	3	FOXI1	5	169533089	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	71588	169533089	11382171	873	6247										
KCNMB1	3779	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	169810783	169810783	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	atgggtactggggcaccttcTtgcccttcagctcctcctgg	11	14	2	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	KCNMB1-92	NM_004137	exon3	c.T206G	p.L69R	ACCTTCTTGCCCT	.	182	56	143	0	.	0	0	0	0	0	C	169810783	T	C	169810783	3	2	31	1	0	0	0	0	1	0	0	0	8095	1609	56	4	377	4	KCNMB1	5	169810783	Missense_Mutation	SNP	T	TCGA-OR-A5KB-01A-11D-A30A-10	277694	169810783	11104477	874	6248										
TLX3	30012	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr5	170736778	170736778	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gcagccgccgcttcgtgaaaGaccgcttcacaggtgagcag	13	13	1	3	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TLX3-658	NM_021025	exon1	c.G409A	p.D137N	GTGAAAGACCGCT	.	121	44	46	0	.	0	0	0	0	0	A	170736778	G	A	170736778	3	1	31	1	0	0	0	0	1	0	0	0	15999	942	33	3	411	3	TLX3	5	170736778	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	925995	170736778	10178482	875	6249										
ARL10	285598	hgsc.bcm.edu	37	chr5	175792605	175792605	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ggccccttggtgctggcgctGggcggcgccgcggcggtgct	20	14	0	0	rs2303667		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ARL10-91	NM_173664	exon1	c.G39C	p.L13L	GGCGCTGGGCGGC	.	17	7	2	0	G|0.585;C|0.415	0	0	0	0	0	C	175792605	G	C	175792605	2	2	31	1	0	0	0	0	0	0	0	1	926	1335	47	3		3	ARL10	5	175792605	Silent	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	5055827	175792605	5122655	876	6250										
EIF4E1B	253314	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	176070253	176070253	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gaagtcaagctggagctgcaCcccttgcagaacaggtaggc	13	11	1	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_001099408	exon4	c.C186A	p.H62Q	GCTGCACCCCTTG	.	210	92	166	1	.	0	0	0	0	0	A	176070253	C	A	176070253	3	1	31	1	0	0	0	0	1	0	0	0	5042	506	18	3	192	3	EIF4E1B	5	176070253	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	277648	176070253	4845007	877	6251										
ADAMTS2	9509	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	178770799	178770799	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	agttgctgagcgccacagagGaggcttcggctaggccggcc	16	12	0	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ADAMTS2-228	NM_021599	exon2	c.C503A	p.S168Y	ACAGAGGAGGCTT	.	138	51	47	0	.	0	0	0	0	0	T	178770799	G	T	178770799	3	4	31	1	0	0	0	0	1	0	0	0	265	1174	41	3	3291	3	ADAMTS2	5	178770799	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	2700546	178770799	2144461	878	6252										
MAML1	9794	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	179195985	179195985	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	caacaggccgctgtaatgaaGcagcatcagttgcttttgga	11	9	1	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MAML1-848	NM_014757	exon3	c.G1866T	p.K622N	AATGAAGCAGCAT	.	187	67	157	1	.	0	0	0	0	0	T	179195985	G	T	179195985	3	4	31	1	0	0	0	0	1	0	0	0	9233	962	34	3	1876	3	MAML1	5	179195985	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	425186	179195985	1719275	879	6253										
BTNL9	153579	hgsc.bcm.edu	37	chr5	180486429	180486429	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ctgggaggtgcacgtgggccGccgcagccgctggttcctgg	18	13	0	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	BTNL9-91	NM_152547	exon11	c.G1175T	p.R392L	TGGGCCGCCGCAG	.	20	13	0	0	.	0	0	0	0	0	T	180486429	G	T	180486429	3	4	31	1	0	0	0	0	1	0	0	0	1571	1087	38	2	1213	2	BTNL9	5	180486429	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	1290444	180486429	428831	880	6254										
IRF4	3662	ucsc.edu;bcgsc.ca	37	chr6	401669	401669	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tctatgcgaaaagactgtgcCagagcaggatctactgggac	12	9	2	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	IRF4-659	NM_002460	exon7	c.C991T	p.Q331X	CTGTGCCAGAGCA	.	247	92	219	3	.	0	0	0	0	0	T	401669	C	T	401669	4	4	31	1	0	0	0	0	0	1	0	0	7853	595	21	3	1013	3	IRF4	6	401669	Nonsense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10		401669	170713398	881	6255										
BPHL	670	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	3140673	3140673	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	agtgccccgccttgattgtgCacggtgagaaggatcctctg	13	11	1	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	BPHL-90	NM_004332	exon6	c.C718A	p.H240N	ATTGTGCACGGTG	.	226	102	217	1	.	0	0	0	0	0	A	3140673	C	A	3140673	3	1	31	1	0	0	0	0	1	0	0	0	1492	710	25	3	740	3	BPHL	6	3140673	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	2739004	3140673	167974394	882	6256										
CDYL	9425	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	4954182	4954182	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tgcaacatgaagatggagctGgagcaggccaacgagaggga	16	7	0	3	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CDYL-90	NM_004824	exon7	c.G1527T	p.L509L	GGAGCTGGAGCAG	.	150	45	146	0	.	0	0	0	0	0	T	4954182	G	T	4954182	2	4	31	1	0	0	0	0	0	0	0	1	3191	1335	47	3		3	CDYL	6	4954182	Silent	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	1813509	4954182	166160885	883	6257										
DSP	1832	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	7579564	7579564	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ctcagactggcccgagatgcCaactcggaaaactgtaataa	9	11	1	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DSP-518	NM_004415	exon23	c.C3141A	p.A1047A	AGATGCCAACTCG	.	104	34	112	1	.	0	0	0	0	0	A	7579564	C	A	7579564	2	1	31	1	0	0	0	0	0	0	0	1	4792	581	21	3		3	DSP	6	7579564	Silent	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	2625382	7579564	163535503	884	6258										
ATXN1	6310	hgsc.bcm.edu;broad.mit.edu	37	chr6	16328522	16328522	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gaggcaggcattcgttgctcCgctcttggttggatttcatt	12	9	2	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ATXN1-93	NM_001128164	exon7	c.G20T	p.R7L	TTGCTCCGCTCTT	.	24	5	11	0	.	0	0	0	0	0	A	16328522	C	A	16328522	3	1	31	1	0	0	0	0	1	0	0	0	1210	652	23	2	2435	2	ATXN1	6	16328522	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	8748958	16328522	154786545	885	6259										
NHLRC1	378884	hgsc.bcm.edu	37	chr6	18122526	18122526	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ggggcgctgggggcggcgcgAtgggcggccggggactggcg	26	10	0	0	rs115931931	byfrequency	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	NHLRC1-90	NM_198586	exon1	c.T312C	p.H104H	GGCGCGATGGGCG	.	10	6	0	0	A|0.885;G|0.115	0	0	0	0	0	G	18122526	A	G	18122526	2	3	31	1	0	0	0	0	0	0	0	1	10434	330	12	4		4	NHLRC1	6	18122526	Silent	SNP	A	TCGA-OR-A5KB-01A-11D-A30A-10	1794004	18122526	152992541	886	6260										
CDKAL1	54901	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	21000542	21000542	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cctccgacagcgtactcatgGaaatgaaaagagaatactgt	9	9	1	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CDKAL1-92	NM_017774	exon11	c.G994T	p.E332X	CTCATGGAAATGA	.	61	17	55	0	.	0	0	0	0	0	T	21000542	G	T	21000542	4	4	31	1	0	0	0	0	0	1	0	0	3158	1175	41	3	1028	3	CDKAL1	6	21000542	Nonsense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	2878016	21000542	150114525	887	6261										
GPLD1	2822	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	24473883	24473883	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	atgagcctctgaataggagcCgtgaaaatcaatctaagaaa	9	7	3	4	rs139020496	alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GPLD1-228	NM_001503	exon6	c.G454T	p.G152C	AGGAGCCGTGAAA	.	88	49	60	0	C|1.000;T|0.000	0	0	0	0	0	A	24473883	C	A	24473883	3	1	31	1	0	0	0	0	1	0	0	0	6634	652	23	2	2189	2	GPLD1	6	24473883	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	3473341	24473883	146641184	888	6262										
SLC17A2	10246	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	25918769	25918769	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ctgtgagattagtccccccaCacagaggatgatgaaggatc	11	10	0	4	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SLC17A2-91	NM_005835	exon6	c.G595C	p.V199L	CCCCCACACAGAG	.	173	60	130	1	.	0	0	0	0	0	G	25918769	C	G	25918769	3	3	31	1	0	0	0	0	1	0	0	0	14452	478	17	3	739	3	SLC17A2	6	25918769	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	1444886	25918769	145196298	889	6263										
HIST1H2AC	8334	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	26124666	26124666	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gatcctggagctggccggcaAcgcggctcgcgacaacaaga	14	13	0	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	HIST1H2AC-90	NM_003512	exon1	c.A206T	p.N69I	CCGGCAACGCGGC	.	410	123	324	3	.	0	0	0	0	0	T	26124666	A	T	26124666	3	4	31	1	0	0	0	0	1	0	0	0	7151	43	2	5	208	5	HIST1H2AC	6	26124666	Missense_Mutation	SNP	A	TCGA-OR-A5KB-01A-11D-A30A-10	205897	26124666	144990401	890	6264										
HIST1H2BH	8345	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	26252078	26252078	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ggggatcatgaattcctttgTcaacgatatcttcgagcgca	10	9	3	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	HIST1H2BH-93	NM_003524	exon1	c.T200A	p.V67D	CCTTTGTCAACGA	.	283	116	249	1	.	0	0	0	0	0	A	26252078	T	A	26252078	3	1	31	1	0	0	0	0	1	0	0	0	7168	1667	58	5	202	5	HIST1H2BH	6	26252078	Missense_Mutation	SNP	T	TCGA-OR-A5KB-01A-11D-A30A-10	127412	26252078	144862989	891	6265										
BTN3A3	10384	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	26451901	26451901	+	Splice_Site	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cacctcctcaaactctctgcAgcggatgtgattctggatcc	8	14	3	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	BTN3A3-90	NM_006994	exon11	c.1019-2A>T	.	CTCTGCAGCGGAT	.	133	40	145	0	.	0	0	0	0	0	T	26451901	A	T	26451901	5	4	31	1	0	0	0	0	0	0	1	0	1567	202	7	5	1051	5	BTN3A3	6	26451901	Splice_Site	SNP	A	TCGA-OR-A5KB-01A-11D-A30A-10	199823	26451901	144663166	892	6266										
HIST1H2BM	8342	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	27783029	27783029	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tgaactccttcgtcaacgacAtctttgagcgtatcgccgga	9	12	2	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	HIST1H2BM-131	NM_003521	exon1	c.A208T	p.I70F	AACGACATCTTTG	.	193	60	200	0	.	0	0	0	0	0	T	27783029	A	T	27783029	3	4	31	1	0	0	0	0	1	0	0	0	7173	217	8	5	210	5	HIST1H2BM	6	27783029	Missense_Mutation	SNP	A	TCGA-OR-A5KB-01A-11D-A30A-10	1331128	27783029	143332038	893	6267										
TRIM27	5987	hgsc.bcm.edu;broad.mit.edu	37	chr6	28872409	28872409	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tatcagagaggatcaggctgGggtaggccgtgtctgggtcc	17	8	3	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TRIM27-684	NM_006510	exon8	c.C980G	p.P327R	AGGCTGGGGTAGG	.	6	4	8	0	.	0	0	0	0	0	C	28872409	G	C	28872409	3	2	31	1	0	0	0	0	1	0	0	0	16539	1232	43	3	565	3	TRIM27	6	28872409	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	1089380	28872409	142242658	894	6268										
GABBR1	2550	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	29581230	29581230	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tcagggtgtcttttcagtcgCttggttagtttctccacaaa	9	9	4	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GABBR1-521	NM_001470	exon12	c.G1356T	p.K452N	CAGTCGCTTGGTT	.	149	52	125	0	.	0	0	0	0	0	A	29581230	C	A	29581230	3	1	31	1	0	0	0	0	1	0	0	0	6174	796	28	3	1577	3	GABBR1	6	29581230	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	708821	29581230	141533837	895	6269										
TRIM10	10107	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	30126189	30126189	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gcctcaccgtcaggagctccCttgctggcctctcattcttc	8	17	4	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TRIM10-226	NM_052828	exon3	c.G743T	p.R248M	AGCTCCCTTGCTG	.	114	31	110	0	.	0	0	0	0	0	A	30126189	C	A	30126189	3	1	31	1	0	0	0	0	1	0	0	0	16524	681	24	3	810	3	TRIM10	6	30126189	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	544959	30126189	140988878	896	6270										
C6orf136	221545	hgsc.bcm.edu	37	chr6	30615190	30615191	+	In_Frame_Ins	INS	-	-	GCG													0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gcgcaggcgcagagacacccINSgccgccccttcccacctgtg					novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	C6orf136-90	NM_001161376	exon1	c.182_183insGCG	p.P61delinsPR	GACACCCGCCGCC	.	41	16	4	0	.	0	0	0	0	0	GCG	30615191	-	GCG	30615190	7	5	31	1	0	1	1	0	0	0	0	0	2337	652	23	0	184	0	C6orf136	6	30615190	In_Frame_Ins	INS	-	TCGA-OR-A5KB-01A-11D-A30A-10	489001	30615190	140499877	897	6271										
MICB	4277	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	31474946	31474946	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ccacaacacccagcagtgggGggatgtcctgcctgatggga	14	12	0	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MICB-90	NM_005931	exon4	c.G761C	p.G254A	AGTGGGGGGATGT	.	315	54	278	0	.	0	0	0	0	0	C	31474946	G	C	31474946	3	2	31	1	0	0	0	0	1	0	0	0	9603	1232	43	3	775	3	MICB	6	31474946	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	859756	31474946	139640121	898	6272										
C6orf47	57827	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	31627653	31627653	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cgtctgggttctgggtaaggCgggtcaggcctcattggttt	16	8	4	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	C6orf47-91	NM_021184	exon1	c.G72T	p.P24P	GTAAGGCGGGTCA	.	154	49	136	0	.	0	0	0	0	0	A	31627653	C	A	31627653	2	1	31	1	0	0	0	0	0	0	0	1	2370	755	27	2		2	C6orf47	6	31627653	Silent	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	152707	31627653	139487414	899	6273										
VARS	7407	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	31759413	31759413	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gtcagggagtcctggatggcGttggtgagtgcatggcccag	18	8	1	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	VARS-93	NM_006295	exon8	c.C1074T	p.N358N	GATGGCGTTGGTG	.	251	43	231	0	.	0	0	0	0	0	A	31759413	G	A	31759413	2	1	31	1	0	0	0	0	0	0	0	1	17161	1136	40	1		1	VARS	6	31759413	Silent	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	131760	31759413	139355654	900	6274										
RXRB	6257	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	33164382	33164382	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cgctgacgctcctcctgtacCgctgcagggggaagggggag	17	12	0	1	rs148086899	alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	RXRB-189	NM_021976	exon5	c.G822T	p.A274A	CTGTACCGCTGCA	.	60	12	67	0	C|1.000;T|0.000	0	0	0	0	0	A	33164382	C	A	33164382	2	1	31	1	0	0	0	0	0	0	0	1	13799	666	23	2		2	RXRB	6	33164382	Silent	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	1404969	33164382	137950685	901	6275										
ZBTB22	9278	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	33283358	33283358	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cccgtgttctgcttggttccCtggtggttggccaggagcct	14	12	1	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ZBTB22-69	NM_001145338	exon2	c.G1336T	p.G446W	GGTTCCCTGGTGG	.	259	93	236	0	.	0	0	0	0	0	A	33283358	C	A	33283358	3	1	31	1	0	0	0	0	1	0	0	0	17567	681	24	3	572	3	ZBTB22	6	33283358	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	118976	33283358	137831709	902	6276										
PHF1	5252	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	33381015	33381015	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tcccagggctccagcccctgGagagggagagggcacatcct	14	14	0	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PHF1-226	NM_002636	exon5	c.G380C	p.G127A	CCCCTGGAGAGGG	.	122	57	142	0	.	0	0	0	0	0	C	33381015	G	C	33381015	3	2	31	1	0	0	0	0	1	0	0	0	11849	1174	41	3	394	3	PHF1	6	33381015	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	97657	33381015	137734052	903	6277										
GRM4	2914	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	34101175	34101175	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	atgtgagggtggcctttgggCtttcccagggaggaaggcat	17	7	0	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GRM4-525	NM_001256811	exon2	c.G99T	p.K33N	TTTGGGCTTTCCC	.	210	76	127	0	.	0	0	0	0	0	A	34101175	C	A	34101175	3	1	31	1	0	0	0	0	1	0	0	0	6820	796	28	3	2679	3	GRM4	6	34101175	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	720160	34101175	137013892	904	6278										
DNAH8	1769	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	38890846	38890846	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ggctgcaggatttgcttaatGacgctgatacgtgccggaaa	13	8	0	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DNAH8-615	NM_001206927	exon72	c.G10675T	p.D3559Y	CTTAATGACGCTG	.	37	9	45	0	.	0	0	0	0	0	T	38890846	G	T	38890846	3	4	31	1	0	0	0	0	1	0	0	0	4618	1290	45	3	10294	3	DNAH8	6	38890846	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	4789671	38890846	132224221	905	6279										
KCNK5	8645	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	39162077	39162077	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gtggactaggacgccccacaCgatgaagatgactgtgcacg	13	11	0	3	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	KCNK5-227	NM_003740	exon4	c.G502T	p.V168L	CCCACACGATGAA	.	401	134	358	1	.	0	0	0	0	0	A	39162077	C	A	39162077	3	1	31	1	0	0	0	0	1	0	0	0	8090	536	19	2	1005	2	KCNK5	6	39162077	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	271231	39162077	131952990	906	6280										
KCNK16	83795	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	39284652	39284652	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ccctccacatggctgaagacCatgggtgggaagatgagaat	13	9	0	4	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	KCNK16-229	NM_001135106	exon4	c.G567T	p.M189I	GAAGACCATGGGT	.	112	40	106	0	.	0	0	0	0	0	A	39284652	C	A	39284652	3	1	31	1	0	0	0	0	1	0	0	0	8084	594	21	3	759	3	KCNK16	6	39284652	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	122575	39284652	131830415	907	6281										
DAAM2	23500	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	39851832	39851832	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tgaaaagatgttttcagcctAccagaggcaccaggtaagac	10	9	1	4	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DAAM2-228	NM_015345	exon15	c.A1940T	p.Y647F	CAGCCTACCAGAG	.	96	45	91	0	.	0	0	0	0	0	T	39851832	A	T	39851832	3	4	31	1	0	0	0	0	1	0	0	0	4222	391	14	5	1994	5	DAAM2	6	39851832	Missense_Mutation	SNP	A	TCGA-OR-A5KB-01A-11D-A30A-10	567180	39851832	131263235	908	6282										
LRFN2	57497	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	40359771	40359771	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ctcaaagggcaagagcatgcCgttgacagagaggctgcgct	14	10	1	3	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	LRFN2-93	NM_020737	exon3	c.G2281A	p.G761S	GCATGCCGTTGAC	.	312	116	233	1	.	0	0	0	0	0	T	40359771	C	T	40359771	3	4	31	1	0	0	0	0	1	0	0	0	8965	652	23	1	92	1	LRFN2	6	40359771	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	507939	40359771	130755296	909	6283										
FOXP4	116113	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	41555166	41555166	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cgccaccgctacctcgtttgCcgctccccccaaggtctcac	7	21	1	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FOXP4-289	NM_001012426	exon7	c.C788G	p.A263G	CGTTTGCCGCTCC	.	333	42	192	0	.	0	0	0	0	0	G	41555166	C	G	41555166	3	3	31	1	0	0	0	0	1	0	0	0	6048	739	26	3	810	3	FOXP4	6	41555166	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	1195395	41555166	129559901	910	6284										
PTCRA	171558	hgsc.bcm.edu	37	chr6	42893152	42893152	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ccgcctgcgagccctcggctCccatcgactgcacccggcca	10	21	0	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PTCRA-92	NM_001243168	exon4	c.C623A	p.S208Y	TCGGCTCCCATCG	.	78	31	5	0	.	0	0	0	0	0	A	42893152	C	A	42893152	3	1	31	1	0	0	0	0	1	0	0	0	12767	855	30	3	592	3	PTCRA	6	42893152	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	1337986	42893152	128221915	911	6285										
PEX6	5190	hgsc.bcm.edu	37	chr6	42946490	42946490	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tccagcacccgcggtccgggCactgggagggtctctccgcg	15	16	1	0	rs9462858	byfrequency	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PEX6-91	NM_000287	exon1	c.G399T	p.V133V	TCCGGGCACTGGG	.	15	6	0	0	C|0.673;A|0.327	0	0	0	0	0	A	42946490	C	A	42946490	2	1	31	1	0	0	0	0	0	0	0	1	11779	697	25	3		3	PEX6	6	42946490	Silent	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	53338	42946490	128168577	912	6286										
KLC4	89953	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	43038449	43038449	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ggtcctgggcacgaatcatcCagatgtggcaaaacagctga	12	10	1	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	KLC4-94	NM_201523	exon8	c.C1055G	p.P352R	ATCATCCAGATGT	.	293	111	207	0	.	0	0	0	0	0	G	43038449	C	G	43038449	3	3	31	1	0	0	0	0	1	0	0	0	8357	594	21	3	1154	3	KLC4	6	43038449	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	91959	43038449	128076618	913	6287										
SLC22A7	10864	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	43266402	43266402	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gaagaaaggcagagccgtggGgagctggaggatgaacctgc	18	7	0	3	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SLC22A7-90	NM_006672	exon1	c.G306C	p.G102G	CCGTGGGGAGCTG	.	130	55	103	0	.	0	0	0	0	0	C	43266402	G	C	43266402	2	2	31	1	0	0	0	0	0	0	0	1	14494	1219	43	3		3	SLC22A7	6	43266402	Silent	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	227953	43266402	127848665	914	6288										
TJAP1	93643	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	43472938	43472938	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gttctctgaggataaggttcGgatcccccgcaacagccccc	10	15	1	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TJAP1-90	NM_001146016	exon11	c.G1019T	p.R340L	AGGTTCGGATCCC	.	107	35	122	0	.	0	0	0	0	0	T	43472938	G	T	43472938	3	4	31	1	0	0	0	0	1	0	0	0	15965	1116	39	2	1049	2	TJAP1	6	43472938	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	206536	43472938	127642129	915	6289										
POLR1C	9533	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	43488718	43488718	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ccggctggataccttcagcaGagaaatcttccggaatgaga	11	10	2	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	POLR1C-90	NM_203290	exon8	c.G854T	p.R285I	TCAGCAGAGAAAT	.	91	34	68	0	.	0	0	0	0	0	T	43488718	G	T	43488718	3	4	31	1	0	0	0	0	1	0	0	0	12240	942	33	3	884	3	POLR1C	6	43488718	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	15780	43488718	127626349	916	6290										
TDRD6	221400	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	46657182	46657182	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cgtgtgtttggagtacagtcGtgttgcttggctgaccgagt	15	7	0	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TDRD6-138	NM_001168359	exon1	c.G1317A	p.S439S	ACAGTCGTGTTGC	.	50	21	56	0	.	0	0	0	0	0	A	46657182	G	A	46657182	2	1	31	1	0	0	0	0	0	0	0	1	15771	1132	40	1		1	TDRD6	6	46657182	Silent	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	3168464	46657182	124457885	917	6291										
PLA2G7	7941	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	46677128	46677128	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	accaaaagaatgtccaattaCtgctattttttccctatcaa	3	10	1	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PLA2G7-90	NM_005084	exon9	c.G805T	p.V269L	CAATTACTGCTAT	.	80	16	53	0	.	0	0	0	0	0	A	46677128	C	A	46677128	3	1	31	1	0	0	0	0	1	0	0	0	12038	565	20	3	536	3	PLA2G7	6	46677128	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	19946	46677128	124437939	918	6292										
GPR111	222611	hgsc.bcm.edu	37	chr6	47649787	47649793	+	Frame_Shift_Del	DEL	GCAGATG	GCAGATG	-													0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ttgcagccactttgctgatgGcagatgtgtggttcattgtg					novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	GCAGATG	GCAGATG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GPR111-91	NM_153839	exon7	c.1288_1294del	p.430_432del	CTGATGGCAGATG	.	278	0	261	0	.	0	0	0	0	0	-	47649793	GCAGATG	-	47649787	7	5	31	1	0	1	0	1	0	0	0	0	6648	1203	42	0	1306	0	GPR111	6	47649787	Frame_Shift_Del	DEL	GCAGATG	TCGA-OR-A5KB-01A-11D-A30A-10	972659	47649787	123465280	919	6293	60	3								
GPR111	222611	hgsc.bcm.edu	37	chr6	47649791	47649791	+	Missense_Mutation	SNP	A	A	G													0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	agccactttgctgatggcagAtgtgtggttcattgtggctt					novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GPR111-91	NM_153839	exon7	c.A1292G	p.D431G	TGGCAGATGTGTG	.	278	34	269	0	.	0	0	0	0	0	G	47649791	A	G	47649791	3	3	31	1	0	0	0	0	1	0	0	0	6648	333	12	4	1310	4	GPR111	6	47649791	Missense_Mutation	SNP	A	TCGA-OR-A5KB-01A-11D-A30A-10	4	47649791	123465276	920	6294	60	3								
GPR111	222611	broad.mit.edu;bcgsc.ca	37	chr6	47649793	47649794	+	Frame_Shift_Ins	INS	-	-	A													0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cactttgctgatggcagatgINStgtggttcattgtggcttcc					novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GPR111-91	NM_153839	exon7	c.1294_1295insA	p.V432fs	GCAGATGTGTGGT	.	281	35	267	0	.	0	0	0	0	0	A	47649794	-	A	47649793	7	5	31	1	0	1	1	0	0	0	0	0	6648	1377	48	0	1312	0	GPR111	6	47649793	Frame_Shift_Ins	INS	-	TCGA-OR-A5KB-01A-11D-A30A-10	2	47649793	123465274	921	6295	60	3								
RHAG	6005	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	49574560	49574560	+	Splice_Site	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gtttagaatactgtacagtaCcttccaataaacagaatcat	5	8	1	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	RHAG-154	NM_000324	exon10	c.1212+1G>A	.	ACAGTACCTTCCA	.	82	33	76	0	.	0	0	0	0	0	T	49574560	C	T	49574560	5	4	31	1	0	0	0	0	0	0	1	0	13350	521	18	3	24	3	RHAG	6	49574560	Splice_Site	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	1924767	49574560	121540507	922	6296										
CRISP3	10321	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	49701562	49701562	+	Splice_Site	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	attctcaccacattttagacCtaagaaggaacagaccactc	5	12	1	3	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CRISP3-92	NM_001190986	exon6	c.347-1G>T	.	TTAGACCTAAGAA	.	151	63	124	0	.	0	0	0	0	0	A	49701562	C	A	49701562	5	1	31	1	0	0	0	0	0	0	1	0	3887	695	24	3	476	3	CRISP3	6	49701562	Splice_Site	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	127002	49701562	121413505	923	6297										
PGK2	5232	hgsc.bcm.edu;bcgsc.ca	37	chr6	49754216	49754216	+	Frame_Shift_Del	DEL	C	C	-													0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	aatcatctcattgactttgtCcagcatatttttgataagtt					novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PGK2-91	NM_138733	exon1	c.685delG	p.D229fs	CTTTGTCCAGCAT	.	289	86	322	2	.	0	0	0	0	0	-	49754216	C	-	49754216	7	5	31	1	0	1	0	1	0	0	0	0	11820	855	30	0	572	0	PGK2	6	49754216	Frame_Shift_Del	DEL	C	TCGA-OR-A5KB-01A-11D-A30A-10	52654	49754216	121360851	924	6298										
PGK2	5232	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	49754711	49754711	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	aacaccatcaggccgacctaGatgactcataagaactactg	7	12	2	3	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PGK2-91	NM_138733	exon1	c.C190G	p.L64V	GACCTAGATGACT	.	182	61	164	0	.	0	0	0	0	0	C	49754711	G	C	49754711	3	2	31	1	0	0	0	0	1	0	0	0	11820	933	33	3	1067	3	PGK2	6	49754711	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	495	49754711	121360356	925	6299										
DEFB113	245927	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	49936521	49936521	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gcattccggcttgcaagcacCacgaacaagctgacattctc	8	14	1	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DEFB113-90	NM_001037729	exon2	c.G118T	p.G40C	AAGCACCACGAAC	.	77	28	99	0	.	0	0	0	0	0	A	49936521	C	A	49936521	3	1	31	1	0	0	0	0	1	0	0	0	4412	594	21	3	126	3	DEFB113	6	49936521	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	181810	49936521	121178546	926	6300										
PKHD1	5314	ucsc.edu;bcgsc.ca	37	chr6	51774097	51774097	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ttacctctcatagctcccacCagagtgagtgagctcagatg	9	12	2	4	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PKHD1-603	NM_170724	exon40	c.G6666T	p.L2222L	TCCCACCAGAGTG	.	160	50	161	2	.	0	0	0	0	0	A	51774097	C	A	51774097	2	1	31	1	0	0	0	0	0	0	0	1	12000	581	21	3		3	PKHD1	6	51774097	Silent	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	1837576	51774097	119340970	927	6301										
PKHD1	5314	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	51907711	51907711	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cagtctaggtttcacatttaGgaagaggtcttctccagtgg	11	8	4	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PKHD1-603	NM_170724	exon27	c.C3043A	p.L1015I	CATTTAGGAAGAG	.	111	31	120	0	.	0	0	0	0	0	T	51907711	G	T	51907711	3	4	31	1	0	0	0	0	1	0	0	0	12000	991	35	3	9384	3	PKHD1	6	51907711	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	133614	51907711	119207356	928	6302										
PKHD1	5314	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	51907765	51907765	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	accagagggtctcaccaacaTcaagatccgatgcattccaa	7	13	2	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PKHD1-603	NM_170724	exon27	c.A2989T	p.M997L	CCAACATCAAGAT	.	155	63	161	0	.	0	0	0	0	0	A	51907765	T	A	51907765	3	1	31	1	0	0	0	0	1	0	0	0	12000	1435	50	5	9438	5	PKHD1	6	51907765	Missense_Mutation	SNP	T	TCGA-OR-A5KB-01A-11D-A30A-10	54	51907765	119207302	929	6303										
PKHD1	5314	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	51908447	51908447	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ggagtaccacacagaatggaCacagggagttgacccttgga	13	9	0	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PKHD1-603	NM_170724	exon26	c.G2797T	p.V933F	AATGGACACAGGG	.	110	41	106	0	.	0	0	0	0	0	A	51908447	C	A	51908447	3	1	31	1	0	0	0	0	1	0	0	0	12000	478	17	3	9634	3	PKHD1	6	51908447	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	682	51908447	119206620	930	6304										
MCM3	4172	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	52141266	52141266	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	catggcccctgcttccagacGgcgctctcctgggaagtgag	13	14	1	2	rs144158830	byfrequency	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MCM3-228	NM_002388	exon9	c.C1309T	p.R437C	CCAGACGGCGCTC	.	127	54	117	0	G|0.999;A|0.001	0	0	0	0	0	A	52141266	G	A	52141266	3	1	31	1	0	0	0	0	1	0	0	0	9415	1116	39	1	1288	1	MCM3	6	52141266	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	232819	52141266	118973801	931	6305										
GCLC	2729	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr6	53409375	53409375	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	aactggaggatcccgtgccgCcgcacgtggtcggcatggcg	16	13	0	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GCLC-515	NM_001197115	exon1	c.G69T	p.R23R	GTGCCGCCGCACG	.	114	41	47	0	.	0	0	0	0	0	A	53409375	C	A	53409375	2	1	31	1	0	0	0	0	0	0	0	1	6315	726	26	3		3	GCLC	6	53409375	Silent	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	1268109	53409375	117705692	932	6306										
FAM83B	222584	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	54791229	54791229	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ttttcaaagaaatcgttgagGcatcaactcgaggagtatct	9	7	3	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FAM83B-96	NM_001010872	exon3	c.G505T	p.A169S	GTTGAGGCATCAA	.	66	24	64	0	.	0	0	0	0	0	T	54791229	G	T	54791229	3	4	31	1	0	0	0	0	1	0	0	0	5653	1203	42	3	511	3	FAM83B	6	54791229	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	1381854	54791229	116323838	933	6307										
DST	667	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	56426291	56426291	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tttgtccttgagtaagaggcCaagatcttcataaccatgac	8	9	2	4	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DST-523	NM_015548	exon38	c.G6256T	p.G2086C	AGAGGCCAAGATC	.	121	48	95	1	.	0	0	0	0	0	A	56426291	C	A	56426291	3	1	31	1	0	0	0	0	1	0	0	0	4794	594	21	3	9447	3	DST	6	56426291	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	1635062	56426291	114688776	934	6308										
DST	667	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	56480710	56480710	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tgtgattactaattcacactGtcgcagctgctgggcaaacc	9	11	1	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DST-523	NM_001723	exon24	c.C7555T	p.Q2519X	CACACTGTCGCAG	.	153	51	138	1	.	0	0	0	0	0	A	56480710	G	A	56480710	4	1	31	1	0	0	0	0	0	1	0	0	4794	1386	48	3	12844	3	DST	6	56480710	Nonsense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	54419	56480710	114634357	935	6309										
DST	667	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	56495106	56495106	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ataactgcttcttcttcacaCagtttagtttcatagagttt	5	8	4	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DST-523	NM_001723	exon17	c.G2607T	p.L869L	TTCACACAGTTTA	.	59	10	85	0	.	0	0	0	0	0	A	56495106	C	A	56495106	2	1	31	1	0	0	0	0	0	0	0	1	4794	465	17	3		3	DST	6	56495106	Silent	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	14396	56495106	114619961	936	6310										
ZNF451	26036	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	56965611	56965611	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	attcagatactaagatctctGagacagagacccttaaatca	6	9	3	4	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ZNF451-93	NM_001257273	exon4	c.G397T	p.E133X	ATCTCTGAGACAG	.	61	18	61	0	.	0	0	0	0	0	T	56965611	G	T	56965611	4	4	31	1	0	0	0	0	0	1	0	0	17959	1305	45	3		3	ZNF451	6	56965611	Nonsense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	470505	56965611	114149456	937	6311										
KHDRBS2	202559	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	62407105	62407105	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	aagaaaaggtcttaccgtagCtgtcataggcatcctcactt	8	10	3	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	KHDRBS2-272	NM_152688	exon8	c.G947T	p.S316I	CCGTAGCTGTCAT	.	114	32	80	0	.	0	0	0	0	0	A	62407105	C	A	62407105	3	1	31	1	0	0	0	0	1	0	0	0	8168	797	28	3	110	3	KHDRBS2	6	62407105	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	5441494	62407105	108707962	938	6312										
EYS	346007	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	65300987	65300987	+	Silent	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gcataccagctggctaatatCgctgagttcatccagaatgt	9	10	1	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	EYS-660	NM_001142800	exon26	c.G4773T	p.A1591A	TAATATCGCTGAG	.	91	27	99	1	.	0	0	0	0	0	A	65300987	C	A	65300987	2	1	31	1	0	0	0	0	0	0	0	1	5345	871	31	2		2	EYS	6	65300987	Silent	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	2893882	65300987	105814080	939	6313										
EYS	346007	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	65655797	65655797	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cccaatcagataggcacacaCactggtagctctaagagaat	8	11	2	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	EYS-660	NM_001142800	exon15	c.G2270C	p.C757S	CACACACACTGGT	.	52	16	50	0	.	0	0	0	0	0	G	65655797	C	G	65655797	3	3	31	1	0	0	0	0	1	0	0	0	5345	478	17	3	7125	3	EYS	6	65655797	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	354810	65655797	105459270	940	6314										
EYS	346007	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	66053984	66053984	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	agaattattatcttcaggatCgttcacataggttgcatctt	7	7	4	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	EYS-660	NM_001142801	exon10	c.G1546C	p.D516H	CAGGATCGTTCAC	.	185	64	185	1	.	0	0	0	0	0	G	66053984	C	G	66053984	3	3	31	1	0	0	0	0	1	0	0	0	5345	884	31	2	7986	2	EYS	6	66053984	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	398187	66053984	105061083	941	6315										
BAI3	577	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	69943298	69943298	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cgccattttggctcagcaacCtagagaaatagtaagtaaca	8	9	1	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	BAI3-1148	NM_001704	exon18	c.C2597A	p.P866H	AGCAACCTAGAGA	.	158	49	199	0	.	0	0	0	0	0	A	69943298	C	A	69943298	3	1	31	1	0	0	0	0	1	0	0	0	1301	681	24	3	2659	3	BAI3	6	69943298	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	3889314	69943298	101171769	942	6316										
COL19A1	1310	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	70639346	70639346	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gtagttgatggtggaaagaaGgtggtggaatttatgtttca	15	1	1	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	COL19A1-156	NM_001858	exon6	c.G420T	p.K140N	AAAGAAGGTGGTG	.	116	45	119	1	.	0	0	0	0	0	T	70639346	G	T	70639346	3	4	31	1	0	0	0	0	1	0	0	0	3682	991	35	3	438	3	COL19A1	6	70639346	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	696048	70639346	100475721	943	6317										
COL9A1	1297	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	70981789	70981789	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gggggtccaggaataccacgGccctaaaagagtacaataaa	11	9	0	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	COL9A1-94	NM_001851	exon13	c.C1068A	p.G356G	ACCACGGCCCTAA	.	160	40	169	2	.	0	0	0	0	0	T	70981789	G	T	70981789	2	4	31	1	0	0	0	0	0	0	0	1	3713	1190	42	3		3	COL9A1	6	70981789	Silent	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	342443	70981789	100133278	944	6318										
B3GAT2	135152	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr6	71665781	71665781	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ctcgctgcgcgccgccgcgtCctccaccaggatccagtgca	11	19	0	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	B3GAT2-93	NM_080742	exon1	c.G352T	p.D118Y	CCGCGTCCTCCAC	.	99	34	16	0	.	0	0	0	0	0	A	71665781	C	A	71665781	3	1	31	1	0	0	0	0	1	0	0	0	1255	855	30	3	635	3	B3GAT2	6	71665781	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	683992	71665781	99449286	945	6319										
KCNQ5	56479	hgsc.bcm.edu	37	chr6	73332040	73332040	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ggcatgaaggatgtggagtcCggccggggcagggtgctgct	20	8	0	1	rs3734212	byfrequency	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	KCNQ5-158	NM_001160132	exon1	c.C123G	p.S41S	GGAGTCCGGCCGG	.	8	8	0	0	C|0.505;G|0.495	0	0	0	0	0	G	73332040	C	G	73332040	2	3	31	1	0	0	0	0	0	0	0	1	8107	639	23	2		2	KCNQ5	6	73332040	Silent	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	1666259	73332040	97783027	946	6320										
COL12A1	1303	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	75814965	75814965	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gtccaacgctgtcctgtgtaCatgtgcaagaatttggaaaa	10	8	0	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	COL12A1-142	NM_004370	exon54	c.G8222T	p.C2741F	TGTGTACATGTGC	.	176	60	211	0	.	0	0	0	0	0	A	75814965	C	A	75814965	3	1	31	1	0	0	0	0	1	0	0	0	3675	478	17	3	1021	3	COL12A1	6	75814965	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	2482925	75814965	95300102	947	6321										
TTK	7272	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	80744821	80744821	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	atagcttatttgaataaactAcaacaacacagtgataagat	5	6	0	3	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TTK-1299	NM_003318	exon15	c.A1734G	p.L578L	TAAACTACAACAA	.	172	73	207	1	.	0	0	0	0	0	G	80744821	A	G	80744821	2	3	31	1	0	0	0	0	0	0	0	1	16758	378	14	4		4	TTK	6	80744821	Silent	SNP	A	TCGA-OR-A5KB-01A-11D-A30A-10	4929856	80744821	90370246	948	6322										
SNAP91	9892	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	84290239	84290239	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ctggctgccattgcaggactGggtggtaccattgagacagg	15	9	0	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SNAP91-23	NM_001242792	exon23	c.C2229A	p.P743P	AGGACTGGGTGGT	.	240	97	262	0	.	0	0	0	0	0	T	84290239	G	T	84290239	2	4	31	1	0	0	0	0	0	0	0	1	14868	1335	47	3		3	SNAP91	6	84290239	Silent	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	3545418	84290239	86824828	949	6323										
TBX18	9096	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	85446831	85446831	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gccacccatggacatgttcaCggaggtgctgctgctcacgc	12	14	2	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TBX18-73	NM_001080508	exon8	c.G1396T	p.V466L	TGTTCACGGAGGT	.	161	58	158	1	.	0	0	0	0	0	A	85446831	C	A	85446831	3	1	31	1	0	0	0	0	1	0	0	0	15690	536	19	2	431	2	TBX18	6	85446831	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	1156592	85446831	85668236	950	6324										
HTR1E	3354	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	87725124	87725124	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	accatcactgagaagatgctCatttgcatgactctggtggt	10	9	3	3	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	HTR1E-93	NM_000865	exon2	c.C72G	p.L24L	GATGCTCATTTGC	.	339	132	300	0	.	0	0	0	0	0	G	87725124	C	G	87725124	2	3	31	1	0	0	0	0	0	0	0	1	7460	813	29	3		3	HTR1E	6	87725124	Silent	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	2278293	87725124	83389943	951	6325										
RARS2	57038	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	88279286	88279286	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	atgtgatcaagttttctggtGgaagattcaacactctggaa	10	6	4	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	RARS2-92	NM_020320	exon2	c.C59T	p.P20L	TCTGGTGGAAGAT	.	79	11	92	1	.	0	0	0	0	0	A	88279286	G	A	88279286	3	1	31	1	0	0	0	0	1	0	0	0	13094	1348	47	3	1753	3	RARS2	6	88279286	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	554162	88279286	82835781	952	6326										
BACH2	60468	ucsc.edu;bcgsc.ca	37	chr6	90660573	90660573	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tccctcctgtttacagagagCctccaacccaggccccctga	7	18	0	2	rs34335140	byfrequency;alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	BACH2-231	NM_021813	exon7	c.G1252C	p.A418P	AGAGAGCCTCCAA	.	94	28	112	2	C|0.993;T|0.007	0	0	0	0	0	G	90660573	C	G	90660573	3	3	31	1	0	0	0	0	1	0	0	0	1285	739	26	3	1285	3	BACH2	6	90660573	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	2381287	90660573	80454494	953	6327										
MAP3K7	6885	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	91233443	91233443	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tgacttcgagttggcttttcTgaggttggtcctgaggtagt	14	6	1	3	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MAP3K7-980	NM_145331	exon14	c.A1416T	p.S472S	CTTTTCTGAGGTT	.	150	69	151	0	.	0	0	0	0	0	A	91233443	T	A	91233443	2	1	31	1	0	0	0	0	0	0	0	1	9283	1567	55	5		5	MAP3K7	6	91233443	Silent	SNP	T	TCGA-OR-A5KB-01A-11D-A30A-10	572870	91233443	79881624	954	6328										
POU3F2	5454	hgsc.bcm.edu	37	chr6	99283376	99283376	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gccggcgggcagccggccggTctgcaccaccacggcctgcg	16	18	1	0	rs195860		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	POU3F2-90	NM_005604	exon1	c.T627G	p.G209G	GGCCGGTCTGCAC	.	7	7	0	0	T|0.089;G|0.911	0	0	0	0	0	G	99283376	T	G	99283376	2	3	31	1	0	0	0	0	0	0	0	1	12304	1654	58	5		5	POU3F2	6	99283376	Silent	SNP	T	TCGA-OR-A5KB-01A-11D-A30A-10	8049933	99283376	71831691	955	6329										
PRDM13	59336	broad.mit.edu;bcgsc.ca	37	chr6	100062487	100062487	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ccaccctggccagagtctgcTcgccaaagcgggcgacggcc	13	17	1	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PRDM13-135	NM_021620	exon4	c.T1976A	p.L659H	GTCTGCTCGCCAA	.	184	77	50	1	.	0	0	0	0	0	A	100062487	T	A	100062487	3	1	31	1	0	0	0	0	1	0	0	0	12486	1551	54	5	1990	5	PRDM13	6	100062487	Missense_Mutation	SNP	T	TCGA-OR-A5KB-01A-11D-A30A-10	779111	100062487	71052580	956	6330										
MCHR2	84539	bcgsc.ca;mdanderson.org	37	chr6	100382334	100382334	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	agcataaaattaaaatatagCacaccaaaatcaagggtaga	6	6	1	1	rs181709988	by1000genomes;alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MCHR2-525	NM_001040179	exon5	c.G647T	p.C216F	ATATAGCACACCA	.	31	13	40	1	C|1.000;G|0.000	0	0	0	0	0	A	100382334	C	A	100382334	3	1	31	1	0	0	0	0	1	0	0	0	9411	710	25	3	383	3	MCHR2	6	100382334	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	319847	100382334	70732733	957	6331										
GRIK2	2898	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	102124584	102124584	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	agttacctgctgatacaaagGatgcaaaacccttactaaaa	6	9	0	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GRIK2-157	NM_021956	exon4	c.G628C	p.D210H	ACAAAGGATGCAA	.	195	74	196	0	.	0	0	0	0	0	C	102124584	G	C	102124584	3	2	31	1	0	0	0	0	1	0	0	0	6795	1174	41	3	642	3	GRIK2	6	102124584	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	1742250	102124584	68990483	958	6332										
SCML4	256380	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	108041954	108041954	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tgtttctcttggggctggagGctggaggcctcagcccaggt	16	10	2	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SCML4-91	NM_198081	exon6	c.C926T	p.A309V	CTGGAGGCTGGAG	.	75	23	57	1	.	0	0	0	0	0	A	108041954	G	A	108041954	3	1	31	1	0	0	0	0	1	0	0	0	13946	1203	42	3	330	3	SCML4	6	108041954	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	5917370	108041954	63073113	959	6333										
SCML4	256380	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	108068044	108068044	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gggagctgctgcaccttcttCctctccagatagggccccgc	11	16	2	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SCML4-91	NM_198081	exon4	c.G336A	p.R112R	CTTCTTCCTCTCC	.	138	42	106	1	.	0	0	0	0	0	T	108068044	C	T	108068044	2	4	31	1	0	0	0	0	0	0	0	1	13946	854	30	3		3	SCML4	6	108068044	Silent	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	26090	108068044	63047023	960	6334										
LACE1	246269	broad.mit.edu	37	chr6	108677903	108677903	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	atgcatttaaggaatacatcGccttaaacagagtttgccaa	7	8	0	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	LACE1-90	NM_145315	exon5	c.G527C	p.R176P	TACATCGCCTTAA	.	53	6	42	0	.	0	0	0	0	0	C	108677903	G	C	108677903	3	2	31	1	0	0	0	0	1	0	0	0	8617	1087	38	2	545	2	LACE1	6	108677903	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	609859	108677903	62437164	961	6335										
RPF2	84154	broad.mit.edu	37	chr6	111329294	111329294	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ctgatatttgctggcgatgaTttcgatgtaacagaagatta	10	5	0	4	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	RPF2-92	NM_032194	exon7	c.T447C	p.D149D	CGATGATTTCGAT	.	151	4	110	0	.	0	0	0	0	0	C	111329294	T	C	111329294	2	2	31	1	0	0	0	0	0	0	0	1	13582	1490	52	4		4	RPF2	6	111329294	Silent	SNP	T	TCGA-OR-A5KB-01A-11D-A30A-10	2651391	111329294	59785773	962	6336										
WISP3	8838	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	112375568	112375568	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cggtcccagcgacatgcaggGgctcctcttctccactcttc	9	17	3	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	WISP3-90	NM_198239	exon1	c.G62T	p.G21V	TGCAGGGGCTCCT	.	121	42	107	0	.	0	0	0	0	0	T	112375568	G	T	112375568	3	4	31	1	0	0	0	0	1	0	0	0	17412	1232	43	3	64	3	WISP3	6	112375568	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	1046274	112375568	58739499	963	6337										
HS3ST5	222537	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	114378755	114378755	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tcaaccacctttccagatgtTtggtgtagatgctggttctt	9	9	2	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	HS3ST5-92	NM_153612	exon2	c.A707T	p.K236I	AGATGTTTGGTGT	.	139	55	113	0	.	0	0	0	0	0	A	114378755	T	A	114378755	3	1	31	1	0	0	0	0	1	0	0	0	7389	1841	64	5	337	5	HS3ST5	6	114378755	Missense_Mutation	SNP	T	TCGA-OR-A5KB-01A-11D-A30A-10	2003187	114378755	56736312	964	6338										
HS3ST5	222537	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr6	114379130	114379130	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tgactactgccggatgtaggTtcagcatttcaagcagggcc	12	10	2	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	HS3ST5-92	NM_153612	exon2	c.A332C	p.N111T	TGTAGGTTCAGCA	.	99	10	65	0	.	0	0	0	0	0	G	114379130	T	G	114379130	3	3	31	1	0	0	0	0	1	0	0	0	7389	1725	60	5	712	5	HS3ST5	6	114379130	Missense_Mutation	SNP	T	TCGA-OR-A5KB-01A-11D-A30A-10	375	114379130	56735937	965	6339										
GPRC6A	222545	hgsc.bcm.edu	37	chr6	117116960	117116960	+	Frame_Shift_Del	DEL	C	C	-													0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cttgtagttttcttcatttgCccaggactgcattccttgga					novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GPRC6A-96	NM_148963	exon5	c.1587delG	p.G529fs	CATTTGCCCAGGA	.	74	23	57	2	.	0	0	0	0	0	-	117116960	C	-	117116960	7	5	31	1	0	1	0	1	0	0	0	0	6749	726	26	0	1201	0	GPRC6A	6	117116960	Frame_Shift_Del	DEL	C	TCGA-OR-A5KB-01A-11D-A30A-10	2737830	117116960	53998107	966	6340										
GPRC6A	222545	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	117130541	117130541	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ttatttctgagtacccagaaCctatgacagccttaactctt	5	11	2	3	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GPRC6A-96	NM_148963	exon2	c.G434T	p.G145V	CCAGAACCTATGA	.	109	50	85	0	.	0	0	0	0	0	A	117130541	C	A	117130541	3	1	31	1	0	0	0	0	1	0	0	0	6749	507	18	3	2366	3	GPRC6A	6	117130541	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	13581	117130541	53984526	967	6341										
ROS1	6098	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	117709087	117709087	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	acttatgttcaagaaaatatGagtgacttcaggagggtctt	10	5	3	3	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ROS1-1353	NM_002944	exon13	c.C1870T	p.H624Y	AAATATGAGTGAC	.	178	57	132	2	.	0	0	0	0	0	A	117709087	G	A	117709087	3	1	31	1	0	0	0	0	1	0	0	0	13566	1290	45	3	5297	3	ROS1	6	117709087	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	578546	117709087	53405980	968	6342										
C6orf170	221322	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	121563361	121563361	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tcatacctgtaatttttttgCatatcgattgaatataaatg	5	5	1	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	C6orf170-92	NM_152730	exon18	c.G2143T	p.A715S	TTTTTGCATATCG	.	77	21	85	0	.	0	0	0	0	0	A	121563361	C	A	121563361	3	1	31	1	0	0	0	0	1	0	0	0	2350	710	25	3	1690	3	C6orf170	6	121563361	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	3854274	121563361	49551706	969	6343										
NKAIN2	154215	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	124979429	124979429	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gacgtcagtgacacctgcccCagactgggccccagaagacc	11	16	1	4	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	NKAIN2-23	NM_001040214	exon4	c.C371T	p.P124L	CTGCCCCAGACTG	.	184	75	183	1	.	0	0	0	0	0	T	124979429	C	T	124979429	3	4	31	1	0	0	0	0	1	0	0	0	10465	594	21	3	385	3	NKAIN2	6	124979429	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	3416068	124979429	46135638	970	6344										
LAMA2	3908	ucsc.edu;bcgsc.ca	37	chr6	129641765	129641765	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ctgacttgattgaaaaatgtGattgtcccctgggctattct	9	8	1	4	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	LAMA2-162	NM_000426	exon28	c.G4141T	p.D1381Y	AAATGTGATTGTC	.	144	45	140	3	.	0	0	0	0	0	T	129641765	G	T	129641765	3	4	31	1	0	0	0	0	1	0	0	0	8628	1290	45	3	4251	3	LAMA2	6	129641765	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	4662336	129641765	41473302	971	6345										
LAMA2	3908	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	129766860	129766860	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tttagaacaggaagctgaccGgctaatagataaactcaaac	8	8	1	3	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	LAMA2-162	NM_000426	exon45	c.G6323T	p.R2108L	CTGACCGGCTAAT	.	132	52	133	1	.	0	0	0	0	0	T	129766860	G	T	129766860	3	4	31	1	0	0	0	0	1	0	0	0	8628	1116	39	2	6501	2	LAMA2	6	129766860	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	125095	129766860	41348207	972	6346										
TMEM200A	114801	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	130761684	130761684	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gctacccaagagaagaagccCatcaggcgccggccccgggc	13	16	1	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TMEM200A-23	NM_001258277	exon3	c.C117G	p.P39P	GAAGCCCATCAGG	.	88	41	116	0	.	0	0	0	0	0	G	130761684	C	G	130761684	2	3	31	1	0	0	0	0	0	0	0	1	16160	581	21	3		3	TMEM200A	6	130761684	Silent	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	994824	130761684	40353383	973	6347										
TMEM200A	114801	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	130762826	130762826	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	acggaaacatccaagttggcCtaggttggatcggaacaaca	11	9	0	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TMEM200A-23	NM_001258277	exon3	c.C1259A	p.P420H	GTTGGCCTAGGTT	.	73	27	52	0	.	0	0	0	0	0	A	130762826	C	A	130762826	3	1	31	1	0	0	0	0	1	0	0	0	16160	681	24	3	1261	3	TMEM200A	6	130762826	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	1142	130762826	40352241	974	6348										
TMEM200A	114801	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	130762909	130762909	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ataggttgcttgtgccccaaGttgccatcaaaaaggacttt	9	9	1	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TMEM200A-23	NM_001258277	exon3	c.G1342T	p.V448F	CCCCAAGTTGCCA	.	55	22	62	0	.	0	0	0	0	0	T	130762909	G	T	130762909	3	4	31	1	0	0	0	0	1	0	0	0	16160	1029	36	3	1344	3	TMEM200A	6	130762909	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	83	130762909	40352158	975	6349										
TAAR5	9038	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	132910041	132910041	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tgaagggcagccagcacaagAggtatatgcccacagcaatg	12	10	0	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TAAR5-91	NM_003967	exon1	c.T785A	p.L262H	CACAAGAGGTATA	.	310	120	269	2	.	0	0	0	0	0	T	132910041	A	T	132910041	3	4	31	1	0	0	0	0	1	0	0	0	15528	304	11	5	232	5	TAAR5	6	132910041	Missense_Mutation	SNP	A	TCGA-OR-A5KB-01A-11D-A30A-10	2147132	132910041	38205026	976	6350										
TAAR5	9038	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	132910108	132910108	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	atgcttggcagccccagccaGgcttttgctcaatgtggtaa	11	11	1	0	rs188569215	alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TAAR5-91	NM_003967	exon1	c.C718A	p.L240M	CAGCCAGGCTTTT	.	140	55	125	0	G|0.999;A|0.001	0	0	0	0	0	T	132910108	G	T	132910108	3	4	31	1	0	0	0	0	1	0	0	0	15528	991	35	3	299	3	TAAR5	6	132910108	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	67	132910108	38204959	977	6351										
VNN1	8876	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	133032885	133032885	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ggggatccagtttacttcagGgtctgggatgtcctccaaat	12	9	2	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	VNN1-93	NM_004666	exon2	c.C304T	p.P102S	CTTCAGGGTCTGG	.	114	27	96	0	.	0	0	0	0	0	A	133032885	G	A	133032885	3	1	31	1	0	0	0	0	1	0	0	0	17220	1232	43	3	1261	3	VNN1	6	133032885	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	122777	133032885	38082182	978	6352										
EYA4	2070	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	133836501	133836501	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ggatgcctggctacagttaaGggcagagattgaaggtctga	15	6	1	3	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	EYA4-578	NM_172105	exon17	c.G1544T	p.R515M	AGTTAAGGGCAGA	.	111	25	114	1	.	0	0	0	0	0	T	133836501	G	T	133836501	3	4	31	1	0	0	0	0	1	0	0	0	5344	1000	35	3	1606	3	EYA4	6	133836501	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	803616	133836501	37278566	979	6353										
AHI1	54806	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	135754223	135754223	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tgaacatcaaactgtcggacCaatatggcagaatcttctct	7	10	3	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	AHI1-227	NM_001134832	exon15	c.G2208T	p.L736F	TCGGACCAATATG	.	189	62	166	0	.	0	0	0	0	0	A	135754223	C	A	135754223	3	1	31	1	0	0	0	0	1	0	0	0	413	593	21	3	1495	3	AHI1	6	135754223	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	1917722	135754223	35360844	980	6354										
AHI1	54806	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	135754324	135754324	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tacagctggatggaatttagCcgtgtaaacaaaagaaggat	11	5	0	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	AHI1-227	NM_001134832	exon15	c.G2107T	p.A703S	ATTTAGCCGTGTA	.	89	34	116	0	.	0	0	0	0	0	A	135754324	C	A	135754324	3	1	31	1	0	0	0	0	1	0	0	0	413	739	26	3	1596	3	AHI1	6	135754324	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	101	135754324	35360743	981	6355										
BCLAF1	9774	hgsc.bcm.edu	37	chr6	136582203	136582396	+	Frame_Shift_Del	DEL	TGGTGGGTGCAAGTTCTGCTCTGTTGTAATCTTACTTCATATTTATTATTCCTAAAAGAGAGAGAAAAAATTAAAGATTAACAAAAGATGCGGAGAGTGAAAAGGAACCATATTAATAATTGTTCCTAAAAATGAAATAATTCACCCACCAAACCTATATCAAAAAAAATCTGTCAGAATCACAAGTTGAAATT	TGGTGGGTGCAAGTTCTGCTCTGTTGTAATCTTACTTCATATTTATTATTCCTAAAAGAGAGAGAAAAAATTAAAGATTAACAAAAGATGCGGAGAGTGAAAAGGAACCATATTAATAATTGTTCCTAAAAATGAAATAATTCACCCACCAAACCTATATCAAAAAAAATCTGTCAGAATCACAAGTTGAAATT	-													0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	caaaaatcaggtaaaaaaaaTggtgggtgcaagttctgctc					novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	TGGTGGGTGCAAGTTCTGCTCTGTTGTAATCTTACTTCATATTTATTATTCCTAAAAGAGAGAGAAAAAATTAAAGATTAACAAAAGATGCGGAGAGTGAAAAGGAACCATATTAATAATTGTTCCTAAAAATGAAATAATTCACCCACCAAACCTATATCAAAAAAAATCTGTCAGAATCACAAGTTGAAATT	TGGTGGGTGCAAGTTCTGCTCTGTTGTAATCTTACTTCATATTTATTATTCCTAAAAGAGAGAGAAAAAATTAAAGATTAACAAAAGATGCGGAGAGTGAAAAGGAACCATATTAATAATTGTTCCTAAAAATGAAATAATTCACCCACCAAACCTATATCAAAAAAAATCTGTCAGAATCACAAGTTGAAATT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	BCLAF1-228	NM_014739	exon13	c.2758_3016del	p.920_921del	AAAAAATGGTGGG	.	143	0	145	0	.	0	0	0	0	0	-	136582396	TGGTGGGTGCAAGTTCTGCTCTGTTGTAATCTTACTTCATATTTATTATTCCTAAAAGAGAGAGAAAAAATTAAAGATTAACAAAAGATGCGGAGAGTGAAAAGGAACCATATTAATAATTGTTCCTAAAAATGAAATAATTCACCCACCAAACCTATATCAAAAAAAATCTGTCAGAATCACAAGTTGAAATT	-	136582203	7	5	31	1	0	1	0	1	0	0	0	0	1384	1479	51	0		0	BCLAF1	6	136582203	Frame_Shift_Del	DEL	TGGTGGGTGCAAGTTCTGCTCTGTTGTAATCTTACTTCATATTTATTATTCCTAAAAGAGAGAGAAAAAATTAAAGATTAACAAAAGATGCGGAGAGTGAAAAGGAACCATATTAATAATTGTTCCTAAAAATGAAATAATTCACCCACCAAACCTATATCAAAAAAAATCTGTCAGAATCACAAGTTGAAATT	TCGA-OR-A5KB-01A-11D-A30A-10	827879	136582203	34532864	982	6356										
BCLAF1	9774	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr6	136599766	136599766	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	acctcgatgatatctacctcCtcctccttgataataccctc	3	16	1	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	BCLAF1-228	NM_014739	exon4	c.G253T	p.G85X	TACCTCCTCCTCC	.	200	21	147	0	.	0	0	0	0	0	A	136599766	C	A	136599766	4	1	31	1	0	0	0	0	0	1	0	0	1384	690	24	3	2549	3	BCLAF1	6	136599766	Nonsense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	17563	136599766	34515301	983	6357										
TXLNB	167838	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	139563758	139563758	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ctctgctgctgctcgtggggGctgcctactgggctcgcatg	15	13	1	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TXLNB-91	NM_153235	exon10	c.C1960A	p.P654T	GTGGGGGCTGCCT	.	105	20	70	0	.	0	0	0	0	0	T	139563758	G	T	139563758	3	4	31	1	0	0	0	0	1	0	0	0	16826	1203	42	3	98	3	TXLNB	6	139563758	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	2963992	139563758	31551309	984	6358										
GPR126	57211	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	142691775	142691775	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tgaaattgtctctctaaaagGggacatttataactttcgac	7	7	2	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GPR126-91	NM_198569	exon4	c.G914T	p.G305V	TAAAAGGGGACAT	.	136	51	149	0	.	0	0	0	0	0	T	142691775	G	T	142691775	3	4	31	1	0	0	0	0	1	0	0	0	6660	1232	43	3	928	3	GPR126	6	142691775	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	3128017	142691775	28423292	985	6359										
ADAT2	134637	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	143749780	143749780	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tcttgtttgtagaaggtcttTaacatttccactgcttcctc	6	10	2	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ADAT2-90	NM_182503	exon5	c.A501G	p.L167L	GGTCTTTAACATT	.	89	36	88	0	.	0	0	0	0	0	C	143749780	T	C	143749780	2	2	31	1	0	0	0	0	0	0	0	1	285	1751	61	4		4	ADAT2	6	143749780	Silent	SNP	T	TCGA-OR-A5KB-01A-11D-A30A-10	1058005	143749780	27365287	986	6360										
AKAP12	9590	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	151672276	151672276	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tccttcttggatatctgcttCagtgacagaacctcttgaac	7	11	4	3	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	AKAP12-293	NM_005100	exon4	c.C2750T	p.S917L	CTGCTTCAGTGAC	.	135	27	132	0	.	0	0	0	0	0	T	151672276	C	T	151672276	3	4	31	1	0	0	0	0	1	0	0	0	448	838	29	3	2789	3	AKAP12	6	151672276	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	7922496	151672276	19442791	987	6361										
ESR1	2099	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	152201872	152201872	+	Silent	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	agctgccaggcctgccggctCcgtaaatgctacgaagtggg	14	12	0	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ESR1-1042	NM_000125	exon3	c.C726G	p.L242L	CCGGCTCCGTAAA	.	84	33	73	1	.	0	0	0	0	0	G	152201872	C	G	152201872	2	3	31	1	0	0	0	0	0	0	0	1	5269	842	30	3		3	ESR1	6	152201872	Silent	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	529596	152201872	18913195	988	6362										
SYNE1	23345	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr6	152647669	152647669	+	Frame_Shift_Del	DEL	C	C	-													0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cacgtctaggccattgcctgCcagctgtaacaattcttggg					novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SYNE1-607	NM_182961	exon79	c.15055delG	p.A5019fs	TGCCTGCCAGCTG	.	126	33	115	0	.	0	0	0	0	0	-	152647669	C	-	152647669	7	5	31	1	0	1	0	1	0	0	0	0	15482	739	26	0	11683	0	SYNE1	6	152647669	Frame_Shift_Del	DEL	C	TCGA-OR-A5KB-01A-11D-A30A-10	445797	152647669	18467398	989	6363										
SYNE1	23345	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	152737529	152737529	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gtttcctatttacctctgctGaagagcttggcgggtaggtt	12	8	1	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SYNE1-607	NM_033071	exon41	c.C6064T	p.Q2022X	TCTGCTGAAGAGC	.	34	11	40	0	.	0	0	0	0	0	A	152737529	G	A	152737529	4	1	31	1	0	0	0	0	0	1	0	0	15482	1299	45	3	20847	3	SYNE1	6	152737529	Nonsense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	89860	152737529	18377538	990	6364										
SYNE1	23345	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	152793441	152793441	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cagatattctcttacctctcGgccatgtcctctaattgatc	5	13	3	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SYNE1-607	NM_033071	exon15	c.C1479G	p.A493A	CCTCTCGGCCATG	.	112	35	92	0	.	0	0	0	0	0	C	152793441	G	C	152793441	2	2	31	1	0	0	0	0	0	0	0	1	15482	1103	39	2		2	SYNE1	6	152793441	Silent	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	55912	152793441	18321626	991	6365										
MYCT1	80177	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	153042879	153042879	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ttgttttctttgtttcagagGaccttatcatgtccttcact	6	9	4	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MYCT1-91	NM_025107	exon2	c.G199T	p.D67Y	TCAGAGGACCTTA	.	62	30	46	0	.	0	0	0	0	0	T	153042879	G	T	153042879	3	4	31	1	0	0	0	0	1	0	0	0	10050	1174	41	3	205	3	MYCT1	6	153042879	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	249438	153042879	18072188	992	6366										
IPCEF1	26034	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	154587053	154587053	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	aaaggatacttacaagagcaCtgccatcaatagccatgtat	7	9	1	1	rs139019503	alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	IPCEF1-90	NM_001130699	exon4	c.G29T	p.S10I	AGAGCACTGCCAT	.	119	44	120	0	C|1.000;T|0.000	0	0	0	0	0	A	154587053	C	A	154587053	3	1	31	1	0	0	0	0	1	0	0	0	7812	565	20	3	1327	3	IPCEF1	6	154587053	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	1544174	154587053	16528014	993	6367										
TIAM2	26230	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	155450837	155450837	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gaagaccgcaagagcccccgAgtgctcatcaaaacgctggg	12	13	2	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TIAM2-93	NM_012454	exon3	c.A480T	p.R160R	CCCCCGAGTGCTC	.	60	20	62	1	.	0	0	0	0	0	T	155450837	A	T	155450837	2	4	31	1	0	0	0	0	0	0	0	1	15928	291	11	5		5	TIAM2	6	155450837	Silent	SNP	A	TCGA-OR-A5KB-01A-11D-A30A-10	863784	155450837	15664230	994	6368										
TIAM2	26230	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	155458506	155458506	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	acatttatgagaatttcatgCgagagttggaaatgagcagg	12	4	1	3	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TIAM2-93	NM_012454	exon4	c.C1390G	p.R464G	TTCATGCGAGAGT	.	120	36	130	0	.	0	0	0	0	0	G	155458506	C	G	155458506	3	3	31	1	0	0	0	0	1	0	0	0	15928	760	27	2	1396	2	TIAM2	6	155458506	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	7669	155458506	15656561	995	6369										
NOX3	50508	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	155764494	155764494	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gccagaagtccctgggcctcCtcggactggctccagtggta	13	14	0	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	NOX3-91	NM_015718	exon5	c.G399T	p.E133D	GGCCTCCTCGGAC	.	218	85	189	0	.	0	0	0	0	0	A	155764494	C	A	155764494	3	1	31	1	0	0	0	0	1	0	0	0	10586	680	24	3	1343	3	NOX3	6	155764494	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	305988	155764494	15350573	996	6370										
ARID1B	57492	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	157505500	157505500	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gcaagatcgaacgtggggagGagcccccgccggaagtcttc	15	12	1	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ARID1B-154	NM_020732	exon13	c.G3481T	p.E1161X	GGGGAGGAGCCCC	.	187	75	141	0	.	0	0	0	0	0	T	157505500	G	T	157505500	4	4	31	1	0	0	0	0	0	1	0	0	914	1175	41	3	3531	3	ARID1B	6	157505500	Nonsense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	1741006	157505500	13609567	997	6371										
RSPH3	83861	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	159401950	159401950	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cttgtgcattatttcccactGctgtttcttacgccgttcct	6	13	1	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	RSPH3-92	NM_031924	exon6	c.C1141T	p.Q381X	CCCACTGCTGTTT	.	156	47	124	0	.	0	0	0	0	0	A	159401950	G	A	159401950	4	1	31	1	0	0	0	0	0	1	0	0	13740	1328	46	3	553	3	RSPH3	6	159401950	Nonsense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	1896450	159401950	11713117	998	6372										
FNDC1	84624	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	159646610	159646610	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	agaagggggaattggccaggTgggattataagcagatcgct	16	5	0	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FNDC1-138	NM_032532	exon8	c.T928A	p.W310R	GCCAGGTGGGATT	.	193	66	154	2	.	0	0	0	0	0	A	159646610	T	A	159646610	3	1	31	1	0	0	0	0	1	0	0	0	5987	1696	59	5	958	5	FNDC1	6	159646610	Missense_Mutation	SNP	T	TCGA-OR-A5KB-01A-11D-A30A-10	244660	159646610	11468457	999	6373										
IGF2R	3482	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr6	160468850	160468850	+	Frame_Shift_Del	DEL	C	C	-													0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gataactccacctacaacttCcggtggtacaccagctatgc					novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	IGF2R-118	NM_000876	exon17	c.2256delC	p.F752fs	CAACTTCCGGTGG	.	123	39	100	0	.	0	0	0	0	0	-	160468850	C	-	160468850	7	5	31	1	0	1	0	1	0	0	0	0	7597	854	30	0	2322	0	IGF2R	6	160468850	Frame_Shift_Del	DEL	C	TCGA-OR-A5KB-01A-11D-A30A-10	822240	160468850	10646217	1000	6374	61	3								
IGF2R	3482	hgsc.bcm.edu	37	chr6	160468851	160468852	+	Frame_Shift_Del	DEL	CG	CG	-													0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ataactccacctacaacttcCggtggtacaccagctatgcc					novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	CG	CG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	IGF2R-118	NM_000876	exon17	c.2257_2258del	p.753_753del	AACTTCCGGTGGT	.	120	0	100	0	.	0	0	0	0	0	-	160468852	CG	-	160468851	7	5	31	1	0	1	0	1	0	0	0	0	7597	643	23	0	2323	0	IGF2R	6	160468851	Frame_Shift_Del	DEL	CG	TCGA-OR-A5KB-01A-11D-A30A-10	1	160468851	10646216	1001	6375	61	3								
IGF2R	3482	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	chr6	160468852	160468852	+	Missense_Mutation	SNP	G	G	T													0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	taactccacctacaacttccGgtggtacaccagctatgcct					rs141234361	alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	IGF2R-118	NM_000876	exon17	c.G2258T	p.R753L	ACTTCCGGTGGTA	.	121	40	100	0	G|1.000;A|0.000	0	0	0	0	0	T	160468852	G	T	160468852	3	4	31	1	0	0	0	0	1	0	0	0	7597	1116	39	2	2324	2	IGF2R	6	160468852	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	1	160468852	10646215	1002	6376	61	3								
PLG	5340	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	161134147	161134147	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tatgactactgcgacattctTgagtgtgaaggtcaggagtg	13	6	2	3	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PLG-94	NM_000301	exon5	c.T537A	p.L179L	CATTCTTGAGTGT	.	137	46	100	0	.	0	0	0	0	0	A	161134147	T	A	161134147	2	1	31	1	0	0	0	0	0	0	0	1	12115	1799	63	5		5	PLG	6	161134147	Silent	SNP	T	TCGA-OR-A5KB-01A-11D-A30A-10	665295	161134147	9980920	1003	6377										
PDE10A	10846	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	165801852	165801852	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ggaagtggagtagagagcggCcagagggtggtcgaacttct	18	6	1	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PDE10A-519	NM_001130690	exon17	c.G1747T	p.A583S	GAGCGGCCAGAGG	.	177	55	130	0	.	0	0	0	0	0	A	165801852	C	A	165801852	3	1	31	1	0	0	0	0	1	0	0	0	11659	739	26	3	646	3	PDE10A	6	165801852	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	4667705	165801852	5313215	1004	6378										
T	6862	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	166580287	166580287	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	acgaagtccagcaggaaggaGtacatggcgttggggtccag	16	8	0	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	T-516	NM_003181	exon3	c.C264A	p.Y88X	GAAGGAGTACATG	.	225	81	135	0	.	0	0	0	0	0	T	166580287	G	T	166580287	4	4	31	1	0	0	0	0	0	1	0	0	15525	1024	36	3	1071	3	T	6	166580287	Nonsense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	778435	166580287	4534780	1005	6379										
UNC93A	54346	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	167721323	167721323	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tgctgtggagacctcgtgctGaccatctggcagtgttcttc	12	11	2	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	UNC93A-90	NM_018974	exon7	c.G1033T	p.D345Y	CGTGCTGACCATC	.	204	70	186	1	.	0	0	0	0	0	T	167721323	G	T	167721323	3	4	31	1	0	0	0	0	1	0	0	0	17034	1290	45	3	1059	3	UNC93A	6	167721323	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	1141036	167721323	3393744	1006	6380										
TTLL2	83887	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	167755029	167755029	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gtcctgtcagaccgtggcaaAgctccagatccccaagcagg	11	14	1	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TTLL2-92	NM_031949	exon3	c.A1641T	p.K547N	TGGCAAAGCTCCA	.	165	54	113	0	.	0	0	0	0	0	T	167755029	A	T	167755029	3	4	31	1	0	0	0	0	1	0	0	0	16765	69	3	5	1651	5	TTLL2	6	167755029	Missense_Mutation	SNP	A	TCGA-OR-A5KB-01A-11D-A30A-10	33706	167755029	3360038	1007	6381										
KIF25	3834	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	168442775	168442775	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tgggaaccccgcagggcatgCggagcaggtgcaggctcgac	17	12	0	0	rs138311357	byfrequency;alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	KIF25-92	NM_030615	exon7	c.C773T	p.A258V	GGCATGCGGAGCA	.	219	33	182	1	C|0.999;A|0.001	0	0	0	0	0	T	168442775	C	T	168442775	3	4	31	1	0	0	0	0	1	0	0	0	8314	768	27	1	795	1	KIF25	6	168442775	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	687746	168442775	2672292	1008	6382										
THBS2	7058	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	169629675	169629675	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	agctgctcctaccttctcatCggtcacaccgtcattgtcat	6	15	4	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	THBS2-95	NM_003247	exon15	c.G2251T	p.D751Y	TCTCATCGGTCAC	.	97	31	69	0	.	0	0	0	0	0	A	169629675	C	A	169629675	3	1	31	1	0	0	0	0	1	0	0	0	15891	884	31	2	1303	2	THBS2	6	169629675	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	1186900	169629675	1485392	1009	6383										
MAD1L1	8379	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	1976421	1976421	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cgcgcaggagcccgcgcagtCgctcgcactccgcctgcagc	13	19	0	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MAD1L1-1083	NM_003550	exon17	c.G1709T	p.R570L	CGCAGTCGCTCGC	.	117	40	18	0	.	0	0	0	0	0	A	1976421	C	A	1976421	3	1	31	1	0	0	0	0	1	0	0	0	9175	884	31	2	459	2	MAD1L1	7	1976421	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10		1976421	157162242	1010	6384										
CARD11	84433	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	2976779	2976779	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ctcatctcgtcgttcttctcCtccagctcgcggatctgctt	7	16	5	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CARD11-870	NM_032415	exon9	c.G1233T	p.E411D	CTTCTCCTCCAGC	.	145	40	157	0	.	0	0	0	0	0	A	2976779	C	A	2976779	3	1	31	1	0	0	0	0	1	0	0	0	2651	680	24	3	2299	3	CARD11	7	2976779	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	1000358	2976779	156161884	1011	6385										
CARD11	84433	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	2978414	2978414	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ggcctccttgcggtcgtgttCcaagatgtccaggatggcct	13	12	0	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CARD11-870	NM_032415	exon7	c.G916C	p.E306Q	CGTGTTCCAAGAT	.	75	13	61	0	.	0	0	0	0	0	G	2978414	C	G	2978414	3	3	31	1	0	0	0	0	1	0	0	0	2651	864	30	3	2624	3	CARD11	7	2978414	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	1635	2978414	156160249	1012	6386										
TNRC18	84629	hgsc.bcm.edu	37	chr7	5372406	5372406	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tgcaggaagatgcgctcgctGcggcgccgcgtccacaggtc	15	14	0	1	rs13238738	byfrequency	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TNRC18-46	NM_001080495	exon19	c.C5994A	p.R1998R	CTCGCTGCGGCGC	.	9	5	0	0	G|0.411;T|0.589	0	0	0	0	0	T	5372406	G	T	5372406	2	4	31	1	0	0	0	0	0	0	0	1	16376	1306	46	3		3	TNRC18	7	5372406	Silent	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	2393992	5372406	153766257	1013	6387										
TNRC18	84629	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr7	5401321	5401321	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gcctgccagggcctctgcgtGccaagcttctatggggttcc	13	14	2	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TNRC18-46	NM_001080495	exon14	c.C4565T	p.A1522V	CTGCGTGCCAAGC	.	73	18	12	0	.	0	0	0	0	0	A	5401321	G	A	5401321	3	1	31	1	0	0	0	0	1	0	0	0	16376	1319	46	3	4409	3	TNRC18	7	5401321	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	28915	5401321	153737342	1014	6388										
USP42	84132	hgsc.bcm.edu	37	chr7	6193521	6193521	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	caagaaggctccgccgccccGcgatcccggcacccccgcta	10	21	0	1	rs61729726	byfrequency	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	USP42-659	NM_032172	exon15	c.G2336C	p.R779P	CGCCCCGCGATCC	.	20	12	0	0	G|0.456;C|0.544	0	0	0	0	0	C	6193521	G	C	6193521	3	2	31	1	0	0	0	0	1	0	0	0	17111	1087	38	2		2	USP42	7	6193521	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	792200	6193521	152945142	1015	6389										
ICA1	3382	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	8258073	8258074	+	Missense_Mutation	DNP	CC	CC	AA													0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	agccaagtatctgagatggcCcgatgccgaaaagtctccac					novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	CC	CC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ICA1-515	NM_022307	exon6	c.G440T	p.R147L	ATGGCCCGATGCC	.	89	7	123	0	.	0	0	0	0	0	AA	8258074	CC	AA	8258073	3	1	31	1	0	0	0	0	1	0	0	0	7498	610	22	3	1046	3	ICA1	7	8258073	Missense_Mutation	DNP	CC	TCGA-OR-A5KB-01A-11D-A30A-10	2064552	8258073	150880590	1016	6390										
THSD7A	221981	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	11419313	11419313	+	Missense_Mutation	SNP	C	C	T													0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gttacaagacctgtcggcatCaggctggctcatcaccaagc					novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	THSD7A-71	NM_015204	exon24	c.G4534A	p.D1512N	CGGCATCAGGCTG	.	86	21	127	0	.	0	0	0	0	0	T	11419313	C	T	11419313	3	4	31	1	0	0	0	0	1	0	0	0	15916	826	29	3	455	3	THSD7A	7	11419313	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	3161240	11419313	147719350	1017	6391	62	2								
THSD7A	221981	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr7	11419314	11419315	+	Missense_Mutation	DNP	AG	AG	CA													0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ttacaagacctgtcggcatcAggctggctcatcaccaagca					novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	AG	AG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	THSD7A-71	NM_015204	exon24	c.C4532T	p.P1511L	GCATCAGGCTGGC	.	86	0	127	0	.	0	0	0	0	0	CA	11419315	AG	CA	11419314	3	2	31	1	0	0	0	0	1	0	0	0	15916	175	7	5	456	5	THSD7A	7	11419314	Missense_Mutation	DNP	AG	TCGA-OR-A5KB-01A-11D-A30A-10	1	11419314	147719349	1018	6392	62	2								
THSD7A	221981	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	11581087	11581087	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cctcttgaacttgcgtgcctGgaccacactcctttccgtta	7	15	1	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	THSD7A-71	NM_015204	exon6	c.C1781G	p.P594R	GTGCCTGGACCAC	.	216	51	264	1	.	0	0	0	0	0	C	11581087	G	C	11581087	3	2	31	1	0	0	0	0	1	0	0	0	15916	1348	47	3	3280	3	THSD7A	7	11581087	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	161773	11581087	147557576	1019	6393										
THSD7A	221981	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr7	11676331	11676331	+	Frame_Shift_Del	DEL	C	C	-													0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cctcacctgaataccttcttCccccttaatgcactcaagag					novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	THSD7A-71	NM_015204	exon2	c.448delG	p.E150fs	CTTCTTCCCCCTT	.	71	13	147	0	.	0	0	0	0	0	-	11676331	C	-	11676331	7	5	31	1	0	1	0	1	0	0	0	0	15916	864	30	0	4629	0	THSD7A	7	11676331	Frame_Shift_Del	DEL	C	TCGA-OR-A5KB-01A-11D-A30A-10	95244	11676331	147462332	1020	6394										
DGKB	1607	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	14661070	14661070	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tattcttgtcaatcactttgTttggctgctgggaaccactc	8	10	3	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DGKB-276	NM_145695	exon14	c.A1220T	p.N407I	ACTTTGTTTGGCT	.	34	9	61	0	.	0	0	0	0	0	A	14661070	T	A	14661070	3	1	31	1	0	0	0	0	1	0	0	0	4477	1725	60	5	1257	5	DGKB	7	14661070	Missense_Mutation	SNP	T	TCGA-OR-A5KB-01A-11D-A30A-10	2984739	14661070	144477593	1021	6395										
DGKB	1607	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	14775769	14775769	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gtgaaatcatcaggaagctcGgcttccaggaatgtcttcat	10	9	4	1	rs10238323	byfrequency;alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DGKB-276	NM_145695	exon4	c.C219A	p.A73A	AAGCTCGGCTTCC	.	104	22	146	0	G|0.984;A|0.016	0	0	0	0	0	T	14775769	G	T	14775769	2	4	31	1	0	0	0	0	0	0	0	1	4477	1103	39	2		2	DGKB	7	14775769	Silent	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	114699	14775769	144362894	1022	6396										
HDAC9	9734	hgsc.bcm.edu;bcgsc.ca	37	chr7	18869083	18869083	+	Splice_Site	DEL	G	G	-													0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ctgttcttctctattccgcaGggggttctgcttttttaatt					novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	HDAC9-227	NM_178423	exon19	c.2370-1G>-	.	TCCGCAGGGGGTT	.	33	14	54	1	.	0	0	0	0	0	-	18869083	G	-	18869083	8	5	31	1	0	1	0	1	0	0	1	0	7035	1014	35	0	2499	0	HDAC9	7	18869083	Splice_Site	DEL	G	TCGA-OR-A5KB-01A-11D-A30A-10	4093314	18869083	140269580	1023	6397										
TMEM196	256130	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	19765212	19765212	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ctcctctgttcataactggcTagtcgacaagtgagccagga	10	11	2	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TMEM196-22	NM_152774	exon3	c.A384T	p.L128L	ACTGGCTAGTCGA	.	153	49	220	1	.	0	0	0	0	0	A	19765212	T	A	19765212	2	1	31	1	0	0	0	0	0	0	0	1	16155	1509	53	5		5	TMEM196	7	19765212	Silent	SNP	T	TCGA-OR-A5KB-01A-11D-A30A-10	896129	19765212	139373451	1024	6398										
ITGB8	3696	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	20444293	20444293	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cagatgccaatgcttcagtgGctgggaaggtgatcgatgcc	14	9	1	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ITGB8-227	NM_002214	exon11	c.G1730C	p.G577A	TCAGTGGCTGGGA	.	152	36	223	0	.	0	0	0	0	0	C	20444293	G	C	20444293	3	2	31	1	0	0	0	0	1	0	0	0	7922	1203	42	3	1772	3	ITGB8	7	20444293	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	679081	20444293	138694370	1025	6399										
SP8	221833	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr7	20824578	20824578	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gcggggctgagcaggtgcgaGgaggcgccgctgctgaaggc	21	10	0	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SP8-91	NM_182700	exon2	c.C858T	p.S286S	GTGCGAGGAGGCG	.	30	6	32	0	.	0	0	0	0	0	A	20824578	G	A	20824578	2	1	31	1	0	0	0	0	0	0	0	1	15005	987	35	3		3	SP8	7	20824578	Silent	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	380285	20824578	138314085	1026	6400										
DNAH11	8701	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	21789958	21789958	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	aactgttggaaattctttatGgccagggtgcgactacagct	11	8	1	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DNAH11-146	.	.	.	.	CTTTATGGCCAGG	.	60	11	85	0	.	0	0	0	0	0	T	21789958	G	T	21789958	3	4	31	1	0	0	0	0	1	0	0	0	4610	1348	47	3	9152	3	DNAH11	7	21789958	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	965380	21789958	137348705	1027	6401										
IGF2BP3	10643	ucsc.edu;bcgsc.ca	37	chr7	23390952	23390952	+	Silent	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ggtctgtttggtgatgttccGaatggtggcaccttcttttc	12	8	2	1	rs41340451	bycluster	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	IGF2BP3-92	NM_006547	exon6	c.C655A	p.R219R	TGTTCCGAATGGT	.	105	25	140	0	G|1.000;|0.000	0	0	0	0	0	T	23390952	G	T	23390952	2	4	31	1	0	0	0	0	0	0	0	1	7596	1057	37	2		2	IGF2BP3	7	23390952	Silent	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	1600994	23390952	135747711	1028	6402										
MPP6	51678	bcgsc.ca	37	chr7	24663284	24663284	+	Splice_Site	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	atgttgcttttatctcagcaGcaatgcagcaagtcttggaa	9	8	2	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MPP6-90	.	.	.	.	TCAGCAGCAATGC	.	30	9	44	1	.	0	0	0	0	0	T	24663284	G	T	24663284	5	4	31	1	0	0	0	0	0	0	1	0	9766	985	34	3		3	MPP6	7	24663284	Splice_Site	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	1272332	24663284	134475379	1029	6403										
DFNA5	1687	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	24789190	24789190	+	Silent	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	caaggaaacatacctggactCggaaattggtcttctatgag	10	8	2	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DFNA5-91	NM_001127453	exon2	c.G204T	p.P68P	TGGACTCGGAAAT	.	32	7	42	0	.	0	0	0	0	0	A	24789190	C	A	24789190	2	1	31	1	0	0	0	0	0	0	0	1	4465	871	31	2		2	DFNA5	7	24789190	Silent	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	125906	24789190	134349473	1030	6404										
C7orf31	136895	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	25182373	25182373	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	atttaaagaagtgttaggagCgaaggttttaggaggttttg	14	1	0	1	rs17150982	byfrequency;alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	C7orf31-90	NM_138811	exon8	c.G745C	p.A249P	TAGGAGCGAAGGT	.	58	17	71	0	C|0.971;T|0.029	0	0	0	0	0	G	25182373	C	G	25182373	3	3	31	1	0	0	0	0	1	0	0	0	2393	768	27	2	1039	2	C7orf31	7	25182373	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	393183	25182373	133956290	1031	6405										
HOXA3	3200	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	27148164	27148164	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ttctggaaccagatcttgatCtggcgctcagtgaggttcag	12	9	5	3	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	HOXA3-153	NM_030661	exon3	c.G702T	p.Q234H	CTTGATCTGGCGC	.	93	17	134	1	.	0	0	0	0	0	A	27148164	C	A	27148164	3	1	31	1	0	0	0	0	1	0	0	0	7314	912	32	3	633	3	HOXA3	7	27148164	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	1965791	27148164	131990499	1032	6406										
EVX1	2128	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	27283071	27283071	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gaacgccgagtaccagcacaGcaaaggtagccaccgtgccc	11	15	0	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	EVX1-91	NM_001989	exon1	c.G422A	p.S141N	AGCACAGCAAAGG	.	72	15	78	0	.	0	0	0	0	0	A	27283071	G	A	27283071	3	1	31	1	0	0	0	0	1	0	0	0	5307	971	34	3	424	3	EVX1	7	27283071	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	134907	27283071	131855592	1033	6407										
CREB5	9586	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	28610012	28610012	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	atgcataatgcagttggtggGgccatgacggggcccggaac	16	9	0	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CREB5-92	NM_182898	exon5	c.G321T	p.G107G	TGGTGGGGCCATG	.	203	72	290	2	.	0	0	0	0	0	T	28610012	G	T	28610012	2	4	31	1	0	0	0	0	0	0	0	1	3866	1219	43	3		3	CREB5	7	28610012	Silent	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	1326941	28610012	130528651	1034	6408										
NEUROD6	63974	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr7	31377995	31377995	+	Frame_Shift_Del	DEL	G	G	-													0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ccctgcccaaggggacccctGggtggcactgcacagtaatg					novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	NEUROD6-92	NM_022728	exon2	c.888delC	p.P296fs	ACCCCTGGGTGGC	.	101	22	135	0	.	0	0	0	0	0	-	31377995	G	-	31377995	7	5	31	1	0	1	0	1	0	0	0	0	10380	1335	47	0	129	0	NEUROD6	7	31377995	Frame_Shift_Del	DEL	G	TCGA-OR-A5KB-01A-11D-A30A-10	2767983	31377995	127760668	1035	6409										
BMPER	168667	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	34006114	34006114	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gcacctatgaaggaaataccTataacagctccttcaaatgg	7	10	1	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	BMPER-92	NM_133468	exon5	c.T343C	p.Y115H	AATACCTATAACA	.	50	11	107	0	.	0	0	0	0	0	C	34006114	T	C	34006114	3	2	31	1	0	0	0	0	1	0	0	0	1469	1522	53	4	357	4	BMPER	7	34006114	Missense_Mutation	SNP	T	TCGA-OR-A5KB-01A-11D-A30A-10	2628119	34006114	125132549	1036	6410										
BMPER	168667	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	34125628	34125628	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tcaaggtaaagctccgggccCatcgagaatgccaaaagctc	10	12	1	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	BMPER-92	NM_133468	exon14	c.C1669A	p.H557N	CGGGCCCATCGAG	.	117	20	172	0	.	0	0	0	0	0	A	34125628	C	A	34125628	3	1	31	1	0	0	0	0	1	0	0	0	1469	594	21	3	1719	3	BMPER	7	34125628	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	119514	34125628	125013035	1037	6411										
AOAH	313	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	36726385	36726385	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	aagctgttctattacagacaCcaccagcacacaccctgcca	5	16	1	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	AOAH-91	NM_001637	exon2	c.G142T	p.V48L	CAGACACCACCAG	.	137	48	151	0	.	0	0	0	0	0	A	36726385	C	A	36726385	3	1	31	1	0	0	0	0	1	0	0	0	726	507	18	3	2006	3	AOAH	7	36726385	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	2600757	36726385	122412278	1038	6412										
ELMO1	9844	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	37298802	37298802	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ttactcagtgccgctctccaCcatctgcgtgaggagagaga	11	12	3	3	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ELMO1-96	NM_014800	exon6	c.G397T	p.V133L	TCTCCACCATCTG	.	84	29	115	0	.	0	0	0	0	0	A	37298802	C	A	37298802	3	1	31	1	0	0	0	0	1	0	0	0	5078	507	18	3	1854	3	ELMO1	7	37298802	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	572417	37298802	121839861	1039	6413										
POU6F2	11281	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr7	39379343	39379343	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cccgtcaaccaaccagcaccCgcaaccagccccacaggcgc	7	22	1	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	POU6F2-90	NM_007252	exon6	c.C614A	p.P205Q	AGCACCCGCAACC	.	23	6	12	0	.	0	0	0	0	0	A	39379343	C	A	39379343	3	1	31	1	0	0	0	0	1	0	0	0	12314	652	23	2	632	2	POU6F2	7	39379343	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	2080541	39379343	119759320	1040	6414										
INHBA	3624	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	41739811	41739811	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tgcttcttgacggcctccacCatctctggctgagagttggg	12	12	2	2	rs140132631		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	INHBA-703	NM_002192	exon2	c.G162T	p.M54I	CTCCACCATCTCT	.	42	15	87	0	C|1.000;A|0.000	0	0	0	0	0	A	41739811	C	A	41739811	3	1	31	1	0	0	0	0	1	0	0	0	7762	594	21	3	1126	3	INHBA	7	41739811	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	2360468	41739811	117398852	1041	6415										
NPC1L1	29881	bcgsc.ca	37	chr7	44579180	44579180	+	Silent	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cccaggtagaaggtggagtcGagggcctgggggcgggctat	20	8	0	1	rs2072183	byfrequency	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	NPC1L1-94	NM_001101648	exon2	c.C816G	p.L272L	GGAGTCGAGGGCC	.	128	5	159	0	G|0.644;C|0.356;A|0.000	0	0	0	0	0	C	44579180	G	C	44579180	2	2	31	1	0	0	0	0	0	0	0	1	10600	1045	37	2		2	NPC1L1	7	44579180	Silent	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	2839369	44579180	114559483	1042	6416										
RAMP3	10268	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	45222995	45222995	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ggtgtggcgcagcaaacgcaCcgacacgctgctgtgagggt	16	11	0	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	RAMP3-90	NM_005856	exon3	c.C431G	p.T144S	AACGCACCGACAC	.	100	29	109	0	.	0	0	0	0	0	G	45222995	C	G	45222995	3	3	31	1	0	0	0	0	1	0	0	0	13058	507	18	3	441	3	RAMP3	7	45222995	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	643815	45222995	113915668	1043	6417										
ADCY1	107	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	45697346	45697347	+	Missense_Mutation	DNP	AG	AG	GA													0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	atctgtggctgaagccaccgAggtggatctgaacatgcgtg					novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	AG	AG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ADCY1-95	NM_021116	exon6	c.G1170A	p.E390G	CACCGAGGTGGAT	.	136	0	200	0	.	0	0	0	0	0	GA	45697347	AG	GA	45697346	3	3	31	1	0	0	0	0	1	0	0	0	292	304	11	4	1191	4	ADCY1	7	45697346	Missense_Mutation	DNP	AG	TCGA-OR-A5KB-01A-11D-A30A-10	474351	45697346	113441317	1044	6418										
ADCY1	107	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	45753294	45753294	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	acttctctccatcaacaggtGactgaggaagtccaccggct	9	13	2	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ADCY1-95	NM_021116	exon20	c.G3060T	p.V1020V	ACAGGTGACTGAG	.	140	43	185	0	.	0	0	0	0	0	T	45753294	G	T	45753294	2	4	31	1	0	0	0	0	0	0	0	1	292	1277	45	3		3	ADCY1	7	45753294	Silent	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	55948	45753294	113385369	1045	6419										
IGFBP1	3484	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	45932578	45932578	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gtgtgagacatccatggatgGagaggcgggactctgctggt	17	7	1	2	rs201339143	alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	IGFBP1-946	NM_000596	exon4	c.G668T	p.G223V	TGGATGGAGAGGC	.	53	15	53	0	.	0	0	0	0	0	T	45932578	G	T	45932578	3	4	31	1	0	0	0	0	1	0	0	0	7599	1174	41	3	682	3	IGFBP1	7	45932578	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	179284	45932578	113206085	1046	6420										
ABCA13	154664	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	48314688	48314688	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ttgaattagtatcagataagCcagatattatttcagaggct	8	5	2	4	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ABCA13-521	NM_152701	exon17	c.C5425G	p.P1809A	GATAAGCCAGATA	.	34	14	74	0	.	0	0	0	0	0	G	48314688	C	G	48314688	3	3	31	1	0	0	0	0	1	0	0	0	31	739	26	3	5320	3	ABCA13	7	48314688	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	2382110	48314688	110823975	1047	6421										
IKZF1	10320	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	50468109	50468109	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tccgagaactcgcaggacgcGctccgcgtggtcagcaccag	13	15	1	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	IKZF1-1242	NM_006060	exon8	c.G1344C	p.A448A	GGACGCGCTCCGC	.	148	36	104	1	.	0	0	0	0	0	C	50468109	G	C	50468109	2	2	31	1	0	0	0	0	0	0	0	1	7635	1074	38	2		2	IKZF1	7	50468109	Silent	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	2153421	50468109	108670554	1048	6422										
COBL	23242	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr7	51092894	51092894	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tgttgctgagggtgcccgtgCtgaacctggaggccgtcctt	15	11	0	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	COBL-95	NM_015198	exon12	c.G3680T	p.S1227I	CCCGTGCTGAACC	.	84	24	90	0	.	0	0	0	0	0	A	51092894	C	A	51092894	3	1	31	1	0	0	0	0	1	0	0	0	3659	797	28	3	113	3	COBL	7	51092894	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	624785	51092894	108045769	1049	6423										
COBL	23242	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	51111286	51111286	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gagtcctcggtcgtgtcctcCgacgcaaaacagctgccaac	10	15	0	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	COBL-95	NM_015198	exon8	c.G1200T	p.S400S	GTCCTCCGACGCA	.	79	33	108	0	.	0	0	0	0	0	A	51111286	C	A	51111286	2	1	31	1	0	0	0	0	0	0	0	1	3659	639	23	2		2	COBL	7	51111286	Silent	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	18392	51111286	108027377	1050	6424										
POM121L12	285877	broad.mit.edu	37	chr7	53103415	53103415	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gacctcgggaacttctggaaGgcgggagaacccctgctgca	14	12	1	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_182595	exon1	c.G51A	p.K17K	CTGGAAGGCGGGA	.	113	22	67	3	.	0	0	0	0	0	A	53103415	G	A	53103415	2	1	31	1	0	0	0	0	0	0	0	1	12270	991	35	3		3	POM121L12	7	53103415	Silent	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	1992129	53103415	106035248	1051	6425										
POM121L12	285877	broad.mit.edu;bcgsc.ca	37	chr7	53103439	53103439	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ggagaacccctgctgcaaggCcccgacgccctggcggctcc	13	18	0	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_182595	exon1	c.C75A	p.G25G	GCAAGGCCCCGAC	.	132	30	82	2	.	0	0	0	0	0	A	53103439	C	A	53103439	2	1	31	1	0	0	0	0	0	0	0	1	12270	726	26	3		3	POM121L12	7	53103439	Silent	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	24	53103439	106035224	1052	6426										
VSTM2A	222008	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	54617625	54617625	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gagtgcagggtgactgatgcCaactacggggagcttcagga	16	8	1	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_182546	exon4	c.C396G	p.A132A	TGATGCCAACTAC	.	166	46	216	0	.	0	0	0	0	0	G	54617625	C	G	54617625	2	3	31	1	0	0	0	0	0	0	0	1	17267	581	21	3		3	VSTM2A	7	54617625	Silent	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	1514186	54617625	104521038	1053	6427										
LANCL2	55915	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	55479679	55479679	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tgtgcgccacaaaaaattccGatctgggaattacccatcat	7	11	2	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	LANCL2-516	NM_018697	exon6	c.G905T	p.R302L	AATTCCGATCTGG	.	157	53	130	0	.	0	0	0	0	0	T	55479679	G	T	55479679	3	4	31	1	0	0	0	0	1	0	0	0	8643	1058	37	2	927	2	LANCL2	7	55479679	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	862054	55479679	103658984	1054	6428										
CCT6A	908	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	56128072	56128072	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cagatcaaagatgcagtgagGgacggcttgagggctgtcaa	15	7	2	4	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CCT6A-91	NM_001762	exon10	c.G1176T	p.R392S	AGTGAGGGACGGC	.	120	31	168	0	.	0	0	0	0	0	T	56128072	G	T	56128072	3	4	31	1	0	0	0	0	1	0	0	0	2963	1223	43	3	1214	3	CCT6A	7	56128072	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	648393	56128072	103010591	1055	6429										
CALN1	83698	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	71571250	71571250	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gatgaagccgttcccatcccGgtccagaacccgaaaggcct	10	15	0	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CALN1-91	NM_031468	exon4	c.C274A	p.R92R	CATCCCGGTCCAG	.	96	43	94	0	.	0	0	0	0	0	T	71571250	G	T	71571250	2	4	31	1	0	0	0	0	0	0	0	1	2597	1115	39	2		2	CALN1	7	71571250	Silent	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	15443178	71571250	87567413	1056	6430										
MDH2	4191	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	75689773	75689773	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	caaaatcttcggcgtgacgaCcctggacatcgtcagagcca	10	13	2	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MDH2-228	NM_005918	exon5	c.C512T	p.T171I	TGACGACCCTGGA	.	202	69	168	0	.	0	0	0	0	0	T	75689773	C	T	75689773	3	4	31	1	0	0	0	0	1	0	0	0	9438	507	18	3	530	3	MDH2	7	75689773	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	4118523	75689773	83448890	1057	6431										
MAGI2	9863	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	78131056	78131056	+	Missense_Mutation	SNP	G	G	T													0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gtgcaggataaggctgggagGgcatctcccctgaggcacct					novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MAGI2-461	NM_012301	exon5	c.C803A	p.P268H	TGGGAGGGCATCT	.	107	33	85	1	.	0	0	0	0	0	T	78131056	G	T	78131056	3	4	31	1	0	0	0	0	1	0	0	0	9219	1232	43	3	3636	3	MAGI2	7	78131056	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	2441283	78131056	81007607	1058	6432	63	2								
MAGI2	9863	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	78131057	78131057	+	Missense_Mutation	SNP	G	G	T													0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tgcaggataaggctgggaggGcatctcccctgaggcacctg					novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MAGI2-461	NM_012301	exon5	c.C802A	p.P268T	GGGAGGGCATCTC	.	105	32	82	0	.	0	0	0	0	0	T	78131057	G	T	78131057	3	4	31	1	0	0	0	0	1	0	0	0	9219	1203	42	3	3637	3	MAGI2	7	78131057	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	1	78131057	81007606	1059	6433	63	2								
HGF	3082	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	81359060	81359061	+	Nonsense_Mutation	DNP	CC	CC	AA													0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ttggatgcattcagttgtttCcaaaggaacatcagtgtcat					novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	CC	CC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	HGF-516	NM_000601	exon8	c.G900T	p.LE300F*	TGTTTCCAAAGGA	.	59	4	94	0	.	0	0	0	0	0	AA	81359061	CC	AA	81359060	4	1	31	1	0	0	0	0	0	1	0	0	7106	864	30	3	1329	3	HGF	7	81359060	Nonsense_Mutation	DNP	CC	TCGA-OR-A5KB-01A-11D-A30A-10	3228003	81359060	77779603	1060	6434										
SEMA3D	223117	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	84628911	84628911	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ctgttcgcagtactggtcgaGgctgaagtttgggctgctaa	14	8	0	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SEMA3D-138	NM_152754	exon17	c.C2179A	p.L727I	GGTCGAGGCTGAA	.	221	76	216	0	.	0	0	0	0	0	T	84628911	G	T	84628911	3	4	31	1	0	0	0	0	1	0	0	0	14062	1000	35	3	158	3	SEMA3D	7	84628911	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	3269851	84628911	74509752	1061	6435										
SEMA3D	223117	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	84644451	84644451	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gtctctggcaagacaacagtCtgcgcaagctttcccataag	9	12	2	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SEMA3D-138	NM_152754	exon14	c.G1627T	p.D543Y	AACAGTCTGCGCA	.	205	81	213	0	.	0	0	0	0	0	A	84644451	C	A	84644451	3	1	31	1	0	0	0	0	1	0	0	0	14062	913	32	3	722	3	SEMA3D	7	84644451	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	15540	84644451	74494212	1062	6436										
SEMA3D	223117	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	84644491	84644491	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gtgtcgcatctgtgcaaggaGagctgaaccaatccatctcg	11	11	2	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SEMA3D-138	NM_152754	exon14	c.C1587A	p.L529L	CAAGGAGAGCTGA	.	197	72	206	0	.	0	0	0	0	0	T	84644491	G	T	84644491	2	4	31	1	0	0	0	0	0	0	0	1	14062	929	33	3		3	SEMA3D	7	84644491	Silent	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	40	84644491	74494172	1063	6437										
GRM3	2913	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	86394645	86394645	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	aagaatgtgggcgaatcaatGaagaccgagggattcaacgc	13	7	2	3	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GRM3-528	NM_000840	exon2	c.G184A	p.E62K	ATCAATGAAGACC	.	185	37	156	0	.	0	0	0	0	0	A	86394645	G	A	86394645	3	1	31	1	0	0	0	0	1	0	0	0	6819	1291	45	3	186	3	GRM3	7	86394645	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	1750154	86394645	72744018	1064	6438										
ABCB4	5244	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	87082308	87082308	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tgtcgttgatgtcaaaccatCctatttcctgtcgtagaata	7	9	1	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ABCB4-96	NM_018850	exon6	c.G488T	p.G163V	AACCATCCTATTT	.	97	29	116	0	.	0	0	0	0	0	A	87082308	C	A	87082308	3	1	31	1	0	0	0	0	1	0	0	0	43	855	30	3	3464	3	ABCB4	7	87082308	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	687663	87082308	72056355	1065	6439										
ABCB1	5243	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	87138732	87138732	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	aacaggatgggctcctgggaCacgatgcccaggtgtgctcg	15	11	0	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ABCB1-582	NM_000927	exon27	c.G3348T	p.V1116V	CTGGGACACGATG	.	157	24	149	0	.	0	0	0	0	0	A	87138732	C	A	87138732	2	1	31	1	0	0	0	0	0	0	0	1	40	465	17	3		3	ABCB1	7	87138732	Silent	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	56424	87138732	71999931	1066	6440										
DBF4	10926	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	87526653	87526653	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	taaaggtggaagatatgagcCagtaagtatttaagtccaat	10	4	0	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DBF4-253	NM_006716	exon8	c.C679A	p.Q227K	ATGAGCCAGTAAG	.	71	20	72	0	.	0	0	0	0	0	A	87526653	C	A	87526653	3	1	31	1	0	0	0	0	1	0	0	0	4254	608	21	3	709	3	DBF4	7	87526653	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	387921	87526653	71612010	1067	6441										
ZNF804B	219578	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	88963902	88963902	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	aagattatcaatatccgaaaCcaaagacgatgatagctaat	6	7	1	3	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ZNF804B-101	NM_181646	exon4	c.C1606T	p.P536S	CCGAAACCAAAGA	.	117	32	141	0	.	0	0	0	0	0	T	88963902	C	T	88963902	3	4	31	1	0	0	0	0	1	0	0	0	18208	507	18	3	1620	3	ZNF804B	7	88963902	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	1437249	88963902	70174761	1068	6442										
ZNF804B	219578	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	88966065	88966065	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ctctgactccaaccattatcCctgcacaccccactttctta	2	18	2	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ZNF804B-101	NM_181646	exon4	c.C3769A	p.P1257T	ATTATCCCTGCAC	.	129	50	119	0	.	0	0	0	0	0	A	88966065	C	A	88966065	3	1	31	1	0	0	0	0	1	0	0	0	18208	623	22	3	3783	3	ZNF804B	7	88966065	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	2163	88966065	70172598	1069	6443										
SAMD9	54809	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	92732074	92732074	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gatataagaattgtcaggttCtatgatttttgcttgttttg	9	3	2	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SAMD9-140	NM_001193307	exon2	c.G3337A	p.E1113K	CAGGTTCTATGAT	.	103	24	99	1	.	0	0	0	0	0	T	92732074	C	T	92732074	3	4	31	1	0	0	0	0	1	0	0	0	13861	922	32	3	1436	3	SAMD9	7	92732074	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	3766009	92732074	66406589	1070	6444										
SAMD9L	219285	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	92763958	92763958	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ttcaggatcaaactccaacaCagcaaaccatttaatttctt	3	11	3	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SAMD9L-94	NM_152703	exon5	c.G1327T	p.V443L	CCAACACAGCAAA	.	38	11	44	0	.	0	0	0	0	0	A	92763958	C	A	92763958	3	1	31	1	0	0	0	0	1	0	0	0	13862	478	17	3	3431	3	SAMD9L	7	92763958	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	31884	92763958	66374705	1071	6445										
CALCR	799	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	93073002	93073002	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tatgaagatagatcccttcaCagagcatccagaaatagttg	8	8	1	5	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CALCR-664	NM_001164737	exon11	c.G818T	p.C273F	CCTTCACAGAGCA	.	158	62	129	0	.	0	0	0	0	0	A	93073002	C	A	93073002	3	1	31	1	0	0	0	0	1	0	0	0	2585	478	17	3	732	3	CALCR	7	93073002	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	309044	93073002	66065661	1072	6446										
SHFM1	7979	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	96324204	96324204	+	Splice_Site	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ttcatctaagccagcccagtCtaaaaatagaaacagatgct	6	10	3	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SHFM1-227	NM_006304	exon3	c.77-1G>T	.	CCCAGTCTAAAAA	.	48	22	51	0	.	0	0	0	0	0	A	96324204	C	A	96324204	5	1	31	1	0	0	0	0	0	0	1	0	14313	927	32	3	144	3	SHFM1	7	96324204	Splice_Site	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	3251202	96324204	62814459	1073	6447										
BAIAP2L1	55971	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	97944819	97944819	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tgcaaagccacagtgcttatCaaccagaaagcagaagcgcc	9	12	1	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	BAIAP2L1-91	NM_018842	exon7	c.G592T	p.D198Y	GCTTATCAACCAG	.	116	34	99	0	.	0	0	0	0	0	A	97944819	C	A	97944819	3	1	31	1	0	0	0	0	1	0	0	0	1303	826	29	3	975	3	BAIAP2L1	7	97944819	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	1620615	97944819	61193844	1074	6448										
ZKSCAN5	23660	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr7	99129205	99129205	+	Frame_Shift_Del	DEL	C	C	-													0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gaaagccttcagagtgaggtCccaccttgttcagcatcaga					novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ZKSCAN5-91	NM_145102	exon7	c.1853delC	p.S618fs	TGAGGTCCCACCT	.	322	90	169	0	.	0	0	0	0	0	-	99129205	C	-	99129205	7	5	31	1	0	1	0	1	0	0	0	0	17727	855	30	0	1875	0	ZKSCAN5	7	99129205	Frame_Shift_Del	DEL	C	TCGA-OR-A5KB-01A-11D-A30A-10	1184386	99129205	60009458	1075	6449										
ZNF655	79027	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr7	99169990	99169990	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ttacccaagttcctgagactAgagaagtgtataagtctgag	10	7	1	3	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ZNF655-91	NM_001085368	exon4	c.A364G	p.R122G	GAGACTAGAGAAG	.	90	5	57	0	.	0	0	0	0	0	G	99169990	A	G	99169990	3	3	31	1	0	0	0	0	1	0	0	0	18105	412	15	4	796	4	ZNF655	7	99169990	Missense_Mutation	SNP	A	TCGA-OR-A5KB-01A-11D-A30A-10	40785	99169990	59968673	1076	6450										
EPO	2056	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	100320745	100320746	+	Missense_Mutation	DNP	GG	GG	AT													0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	caggggaggcctgcaggacaGgggacagatgaccaggtgtg					novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	GG	GG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	EPO-514	NM_000799	exon5	c.G572T	p.G191M	GGACAGGGGACAG	.	167	0	135	0	.	0	0	0	0	0	AT	100320746	GG	AT	100320745	3	1	31	1	0	0	0	0	1	0	0	0	5201	1000	35	3	589	3	EPO	7	100320745	Missense_Mutation	DNP	GG	TCGA-OR-A5KB-01A-11D-A30A-10	1150755	100320745	58817918	1077	6451										
PLOD3	8985	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	100855544	100855545	+	Missense_Mutation	DNP	CC	CC	AT													0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	acccgctcacatggccatgtCcctggcctcgcctgggctca					novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	CC	CC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PLOD3-92	NM_001084	exon10	c.G1116A	p.D373Y	CATGTCCCTGGCC	.	162	0	104	0	.	0	0	0	0	0	AT	100855545	CC	AT	100855544	3	1	31	1	0	0	0	0	1	0	0	0	12132	855	30	3	1139	3	PLOD3	7	100855544	Missense_Mutation	DNP	CC	TCGA-OR-A5KB-01A-11D-A30A-10	534799	100855544	58283119	1078	6452										
MYL10	93408	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	101259519	101259519	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cacatcggccttgacgaaacCtttcccttcagtgtcgaaca	7	14	1	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MYL10-136	NM_138403	exon6	c.G514T	p.G172C	CGAAACCTTTCCC	.	173	55	157	0	.	0	0	0	0	0	A	101259519	C	A	101259519	3	1	31	1	0	0	0	0	1	0	0	0	10072	681	24	3	178	3	MYL10	7	101259519	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	403975	101259519	57879144	1079	6453										
CUX1	1523	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	101844740	101844740	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cgggagatggaggcccagcaGgctgccctcgaccctgcctt	14	15	0	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CUX1-160	NM_001202543	exon18	c.G2196T	p.Q732H	CCAGCAGGCTGCC	.	260	95	167	1	.	0	0	0	0	0	T	101844740	G	T	101844740	3	4	31	1	0	0	0	0	1	0	0	0	4070	991	35	3	2300	3	CUX1	7	101844740	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	585221	101844740	57293923	1080	6454										
SPDYE6	729597	hgsc.bcm.edu;bcgsc.ca	37	chr7	101991206	101991206	+	Frame_Shift_Del	DEL	G	G	-													0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	atgcgttggtattgccaggaGgggaagccagcccggctgaa					novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SPDYE6-1	NM_001146210	exon5	c.717delC	p.P239fs	CCAGGAGGGGAAG	.	105	64	61	0	.	0	0	0	0	0	-	101991206	G	-	101991206	7	5	31	1	0	1	0	1	0	0	0	0	15070	987	35	0	503	0	SPDYE6	7	101991206	Frame_Shift_Del	DEL	G	TCGA-OR-A5KB-01A-11D-A30A-10	146466	101991206	57147457	1081	6455										
RELN	5649	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	103163855	103163855	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tacacgcagtttccctggatGcatctcccatggccactgca	8	15	1	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	RELN-574	NM_173054	exon47	c.C7473G	p.C2491W	CTGGATGCATCTC	.	139	42	144	0	.	0	0	0	0	0	C	103163855	G	C	103163855	3	2	31	1	0	0	0	0	1	0	0	0	13255	1311	46	3	2985	3	RELN	7	103163855	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	1172649	103163855	55974808	1082	6456										
RELN	5649	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	103193993	103193993	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cttcatttgaaacaaacaccAtagctgaatcttcttcactg	4	11	4	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	RELN-574	NM_173054	exon40	c.T5987C	p.M1996T	AACACCATAGCTG	.	123	36	105	1	.	0	0	0	0	0	G	103193993	A	G	103193993	3	3	31	1	0	0	0	0	1	0	0	0	13255	217	8	4	4499	4	RELN	7	103193993	Missense_Mutation	SNP	A	TCGA-OR-A5KB-01A-11D-A30A-10	30138	103193993	55944670	1083	6457										
PIK3CG	5294	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	106509035	106509035	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gagcagcttaccatccacggCaaggaccacgagagtgtgtt	12	11	0	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PIK3CG-1316	NM_002649	exon2	c.C1029A	p.G343G	CCACGGCAAGGAC	.	289	106	245	1	.	0	0	0	0	0	A	106509035	C	A	106509035	2	1	31	1	0	0	0	0	0	0	0	1	11945	697	25	3		3	PIK3CG	7	106509035	Silent	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	3315042	106509035	52629628	1084	6458										
SLC26A3	1811	broad.mit.edu	37	chr7	107408071	107408071	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	atttgtatttatggtaaaatCaatttttccatctttttcct	3	6	2	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SLC26A3-94	NM_000111	exon20	c.G2224C	p.D742H	TAAAATCAATTTT	.	45	4	56	0	.	0	0	0	0	0	G	107408071	C	G	107408071	3	3	31	1	0	0	0	0	1	0	0	0	14553	826	29	3	78	3	SLC26A3	7	107408071	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	899036	107408071	51730592	1085	6459										
SLC26A3	1811	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	107431510	107431510	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cacctggatgattccagaaaGcactgtgactgatgccgccg	11	12	0	4	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SLC26A3-94	NM_000111	exon5	c.C553G	p.L185V	CAGAAAGCACTGT	.	239	79	206	0	.	0	0	0	0	0	C	107431510	G	C	107431510	3	2	31	1	0	0	0	0	1	0	0	0	14553	971	34	3	1809	3	SLC26A3	7	107431510	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	23439	107431510	51707153	1086	6460										
LAMB4	22798	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	107684339	107684339	+	Silent	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gcctgttcacttatactttcGatctggaatgagaaaaacac	7	9	2	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	LAMB4-140	NM_007356	exon29	c.C4329A	p.I1443I	ACTTTCGATCTGG	.	36	11	28	0	.	0	0	0	0	0	T	107684339	G	T	107684339	2	4	31	1	0	0	0	0	0	0	0	1	8635	1048	37	2		2	LAMB4	7	107684339	Silent	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	252829	107684339	51454324	1087	6461										
NRCAM	4897	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	107816985	107816985	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tgaaatttaaattttttaaaGtccaccgtgtcttgttggca	7	6	1	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	NRCAM-156	NM_001037132	exon24	c.C3041A	p.T1014N	TTTAAAGTCCACC	.	62	21	51	0	.	0	0	0	0	0	T	107816985	G	T	107816985	3	4	31	1	0	0	0	0	1	0	0	0	10673	1029	36	3	931	3	NRCAM	7	107816985	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	132646	107816985	51321678	1088	6462										
NRCAM	4897	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	107880406	107880406	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	aaaacgttaatacttacgatCaagaggtacttccagtgcac	7	9	1	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	NRCAM-156	NM_001037132	exon1	c.G103T	p.D35Y	TACGATCAAGAGG	.	72	24	82	0	.	0	0	0	0	0	A	107880406	C	A	107880406	3	1	31	1	0	0	0	0	1	0	0	0	10673	826	29	3	3961	3	NRCAM	7	107880406	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	63421	107880406	51258257	1089	6463										
PNPLA8	50640	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	108119816	108119816	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	aagggttattcagaagcaaaCctccatcctgcaaaatacaa	6	10	1	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PNPLA8-135	NM_001256008	exon9	c.G1886T	p.G629V	AGCAAACCTCCAT	.	85	24	70	0	.	0	0	0	0	0	A	108119816	C	A	108119816	3	1	31	1	0	0	0	0	1	0	0	0	12200	507	18	3	470	3	PNPLA8	7	108119816	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	239410	108119816	51018847	1090	6464										
FOXP2	93986	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	114294061	114294061	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gagcccaaaccatctcccaaAcctgtaagtgcatattgctt	6	13	1	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FOXP2-295	NM_001172767	exon10	c.A1338T	p.K446N	TCCCAAACCTGTA	.	66	20	51	0	.	0	0	0	0	0	T	114294061	A	T	114294061	3	4	31	1	0	0	0	0	1	0	0	0	6046	40	2	5	1431	5	FOXP2	7	114294061	Missense_Mutation	SNP	A	TCGA-OR-A5KB-01A-11D-A30A-10	6174245	114294061	44844602	1091	6465										
ASZ1	136991	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	117062373	117062373	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	acactagcagcatacataagGggagtccatccatactgaaa	8	10	0	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ASZ1-515	NM_130768	exon3	c.C246T	p.P82P	CATAAGGGGAGTC	.	106	41	90	0	.	0	0	0	0	0	A	117062373	G	A	117062373	2	1	31	1	0	0	0	0	0	0	0	1	1070	1219	43	3		3	ASZ1	7	117062373	Silent	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	2768312	117062373	42076290	1092	6466										
ANKRD7	56311	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	117864956	117864956	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ggctacaaccttcgagaaaaGgatttaaagaaacttcacag	8	8	1	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ANKRD7-90	NM_019644	exon1	c.G72T	p.K24N	AGAAAAGGATTTA	.	302	101	243	0	.	0	0	0	0	0	T	117864956	G	T	117864956	3	4	31	1	0	0	0	0	1	0	0	0	686	991	35	3	74	3	ANKRD7	7	117864956	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	802583	117864956	41273707	1093	6467										
KCND2	3751	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	119914836	119914836	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gtgctgaatgtgagtggcacCcgcttccagacgtggcagga	15	10	0	3	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	KCND2-517	NM_012281	exon1	c.C150A	p.T50T	TGGCACCCGCTTC	.	177	62	169	0	.	0	0	0	0	0	A	119914836	C	A	119914836	2	1	31	1	0	0	0	0	0	0	0	1	8040	610	22	3		3	KCND2	7	119914836	Silent	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	2049880	119914836	39223827	1094	6468										
PTPRZ1	5803	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	121624143	121624143	+	Nonsense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	agacaggtgttttcctcataCactggaaaggaagagattca	10	7	2	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PTPRZ1-699	NM_001206838	exon8	c.C900G	p.Y300X	CTCATACACTGGA	.	65	21	47	0	.	0	0	0	0	0	G	121624143	C	G	121624143	4	3	31	1	0	0	0	0	0	1	0	0	12849	489	17	3	930	3	PTPRZ1	7	121624143	Nonsense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	1709307	121624143	37514520	1095	6469										
SLC13A1	6561	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	122757584	122757584	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	agcattgggtggatttgctaCtggtaggaggaatgcaaatg	15	4	0	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SLC13A1-92	NM_022444	exon14	c.G1591T	p.V531L	TTGCTACTGGTAG	.	261	109	235	1	.	0	0	0	0	0	A	122757584	C	A	122757584	3	1	31	1	0	0	0	0	1	0	0	0	14426	565	20	3	204	3	SLC13A1	7	122757584	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	1133441	122757584	36381079	1096	6470										
ASB15	142685	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	123270074	123270074	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	acttggtaggcagagttactCgtgtactaatagattacatg	10	6	0	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ASB15-228	NM_080928	exon9	c.C1495A	p.R499S	GTTACTCGTGTAC	.	102	30	89	0	.	0	0	0	0	0	A	123270074	C	A	123270074	3	1	31	1	0	0	0	0	1	0	0	0	1020	884	31	2	1525	2	ASB15	7	123270074	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	512490	123270074	35868589	1097	6471										
WASL	8976	broad.mit.edu;bcgsc.ca	37	chr7	123329097	123329097	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tctctctctctctctctaccTgaagaatgaatggctttgct	6	12	4	3	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	WASL-90	NM_003941	exon10	c.A1455G	p.S485S	TCTACCTGAAGAA	.	46	4	41	0	.	0	0	0	0	0	C	123329097	T	C	123329097	2	2	31	1	0	0	0	0	0	0	0	1	17294	1594	55	4		4	WASL	7	123329097	Silent	SNP	T	TCGA-OR-A5KB-01A-11D-A30A-10	59023	123329097	35809566	1098	6472										
GRM8	2918	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	126544129	126544129	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ccccaactatctgagccaatCcagagaaaatgcccactttg	6	14	1	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GRM8-581	NM_000845	exon4	c.G915T	p.W305C	GCCAATCCAGAGA	.	185	84	179	2	.	0	0	0	0	0	A	126544129	C	A	126544129	3	1	31	1	0	0	0	0	1	0	0	0	6824	856	30	3	1889	3	GRM8	7	126544129	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	3215032	126544129	32594534	1099	6473										
GRM8	2918	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	126882813	126882813	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ttgctgcagcacctatgacgCcagaaatcttgtcgggcttg	11	11	1	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GRM8-581	NM_000845	exon1	c.G446T	p.G149V	ATGACGCCAGAAA	.	259	109	194	1	.	0	0	0	0	0	A	126882813	C	A	126882813	3	1	31	1	0	0	0	0	1	0	0	0	6824	739	26	3	2370	3	GRM8	7	126882813	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	338684	126882813	32255850	1100	6474										
PAX4	5078	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	127253093	127253093	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cacctggcagctgcatttccCacttgagcttctcttgccga	8	15	1	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PAX4-227	NM_006193	exon6	c.G674T	p.W225L	ATTTCCCACTTGA	.	196	68	167	0	.	0	0	0	0	0	A	127253093	C	A	127253093	3	1	31	1	0	0	0	0	1	0	0	0	11510	595	21	3	373	3	PAX4	7	127253093	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	370280	127253093	31885570	1101	6475										
PAX4	5078	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	127253928	127253928	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ggagtgaggacagctggagcCaaaacagctgaaaaggaaga	15	6	0	3	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PAX4-227	NM_006193	exon4	c.G420T	p.L140F	TGGAGCCAAAACA	.	90	22	62	0	.	0	0	0	0	0	A	127253928	C	A	127253928	3	1	31	1	0	0	0	0	1	0	0	0	11510	593	21	3	635	3	PAX4	7	127253928	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	835	127253928	31884735	1102	6476										
LRRC4	64101	ucsc.edu;bcgsc.ca	37	chr7	127669562	127669562	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ccacttcacggaggacatagGgggagtccgacacttaagtt	12	10	1	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	LRRC4-154	NM_022143	exon2	c.C1132A	p.P378T	ACATAGGGGGAGT	.	225	90	195	3	.	0	0	0	0	0	T	127669562	G	T	127669562	3	4	31	1	0	0	0	0	1	0	0	0	9024	1232	43	3	833	3	LRRC4	7	127669562	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	415634	127669562	31469101	1103	6477										
FAM71F2	346653	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	128315858	128315858	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ccaatgttacctggccccagGgtccatttaccacctggagc	9	15	0	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_001012454	exon2	c.G310T	p.G104C	CCCCAGGGTCCAT	.	56	26	47	0	.	0	0	0	0	0	T	128315858	G	T	128315858	3	4	31	1	0	0	0	0	1	0	0	0	5632	1232	43	3	316	3	FAM71F2	7	128315858	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	646296	128315858	30822805	1104	6478										
SMO	6608	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	128845593	128845593	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ccgagagatcgtctgccgtgCagatggcaccatgaggcttg	14	11	1	3	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SMO-2451	NM_005631	exon4	c.C890T	p.A297V	GCCGTGCAGATGG	.	85	33	37	0	.	0	0	0	0	0	T	128845593	C	T	128845593	3	4	31	1	0	0	0	0	1	0	0	0	14835	710	25	3	904	3	SMO	7	128845593	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	529735	128845593	30293070	1105	6479										
SMO	6608	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	128846172	128846172	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	acctgctcacctggtcactcCcctttgtcctcactgtggca	7	17	3	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SMO-2451	NM_005631	exon5	c.C1102G	p.P368A	TCACTCCCCTTTG	.	202	79	166	0	.	0	0	0	0	0	G	128846172	C	G	128846172	3	3	31	1	0	0	0	0	1	0	0	0	14835	623	22	3	1120	3	SMO	7	128846172	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	579	128846172	30292491	1106	6480										
PLXNA4	91584	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	131865384	131865384	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	atgaggttgggggactcgcaGagcagctggacatctgacac	15	9	1	3	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PLXNA4-91	NM_020911	exon19	c.C3600A	p.L1200L	CTCGCAGAGCAGC	.	194	76	147	0	.	0	0	0	0	0	T	131865384	G	T	131865384	2	4	31	1	0	0	0	0	0	0	0	1	12151	929	33	3		3	PLXNA4	7	131865384	Silent	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	3019212	131865384	27273279	1107	6481										
PLXNA4	91584	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	131912280	131912280	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tggatctgattgcccacgacCagcccatccatctctgacag	8	15	2	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PLXNA4-91	NM_020911	exon7	c.G1812C	p.L604L	CACGACCAGCCCA	.	244	86	213	0	.	0	0	0	0	0	G	131912280	C	G	131912280	2	3	31	1	0	0	0	0	0	0	0	1	12151	581	21	3		3	PLXNA4	7	131912280	Silent	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	46896	131912280	27226383	1108	6482										
CNOT4	4850	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	135082955	135082955	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	caccgttccctatactgagaGaatctgaaggtttgtcaatg	9	9	2	3	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CNOT4-90	NM_001190850	exon8	c.C845G	p.S282C	CTGAGAGAATCTG	.	62	24	41	0	.	0	0	0	0	0	C	135082955	G	C	135082955	3	2	31	1	0	0	0	0	1	0	0	0	3627	942	33	3	1204	3	CNOT4	7	135082955	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	3170675	135082955	24055708	1109	6483										
PTN	5764	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr7	136912824	136912824	+	Splice_Site	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ttcttcttcttagattctgcTgtgattacaaaaaagagaga	7	6	4	4	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PTN-516	NM_002825	exon6	c.452-2A>T	.	TTCTGCTGTGATT	.	17	7	10	0	.	0	0	0	0	0	A	136912824	T	A	136912824	5	1	31	1	0	0	0	0	0	0	1	0	12801	1594	55	5	60	5	PTN	7	136912824	Splice_Site	SNP	T	TCGA-OR-A5KB-01A-11D-A30A-10	1829869	136912824	22225839	1110	6484										
SVOPL	136306	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	138363243	138363243	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cgaagccgatagtctccactGcatcttccacggtgaacgtc	9	14	2	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SVOPL-68	NM_001139456	exon2	c.C110T	p.A37V	TCCACTGCATCTT	.	99	36	81	0	.	0	0	0	0	0	A	138363243	G	A	138363243	3	1	31	1	0	0	0	0	1	0	0	0	15461	1319	46	3	1424	3	SVOPL	7	138363243	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	1450419	138363243	20775420	1111	6485										
JHDM1D	80853	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	139791751	139791751	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cgcccccgaagtcaggtttgAattctgcatatactttccat	7	12	2	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	JHDM1D-91	NM_030647	exon19	c.T2584G	p.S862A	GGTTTGAATTCTG	.	219	73	176	0	.	0	0	0	0	0	C	139791751	A	C	139791751	3	2	31	1	0	0	0	0	1	0	0	0	7969	246	9	5	249	5	JHDM1D	7	139791751	Missense_Mutation	SNP	A	TCGA-OR-A5KB-01A-11D-A30A-10	1428508	139791751	19346912	1112	6486										
JHDM1D	80853	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	139810956	139810956	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gtccaggtctaacattgtctGgaatttcaaaggcatgttca	9	8	4	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	JHDM1D-91	NM_030647	exon11	c.C1367T	p.P456L	TTGTCTGGAATTT	.	67	10	35	0	.	0	0	0	0	0	A	139810956	G	A	139810956	3	1	31	1	0	0	0	0	1	0	0	0	7969	1348	47	3	1498	3	JHDM1D	7	139810956	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	19205	139810956	19327707	1113	6487										
DENND2A	27147	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	140246647	140246647	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ttgacaaggatggttttgccCagggctgggaaaggggcttc	16	7	0	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DENND2A-138	NM_015689	exon11	c.G2130T	p.L710L	TTTGCCCAGGGCT	.	285	77	193	0	.	0	0	0	0	0	A	140246647	C	A	140246647	2	1	31	1	0	0	0	0	0	0	0	1	4440	581	21	3		3	DENND2A	7	140246647	Silent	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	435691	140246647	18892016	1114	6488										
DENND2A	27147	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	140269463	140269464	+	Nonsense_Mutation	DNP	CC	CC	AA													0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	accttttcctgagttgctctCcattgactgggacagcctct					novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	CC	CC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DENND2A-138	NM_015689	exon5	c.G1521T	p.ME507I*	GCTCTCCATTGAC	.	95	4	56	0	.	0	0	0	0	0	AA	140269464	CC	AA	140269463	4	1	31	1	0	0	0	0	0	1	0	0	4440	864	30	3	1563	3	DENND2A	7	140269463	Nonsense_Mutation	DNP	CC	TCGA-OR-A5KB-01A-11D-A30A-10	22816	140269463	18869200	1115	6489										
TAS2R3	50831	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	141464522	141464522	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	catgttcttgggactctgtgGtacctgcctcccttaattgt	9	11	2	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TAS2R3-90	NM_016943	exon1	c.G564T	p.W188C	TCTGTGGTACCTG	.	325	88	169	0	.	0	0	0	0	0	T	141464522	G	T	141464522	3	4	31	1	0	0	0	0	1	0	0	0	15609	1270	44	3	566	3	TAS2R3	7	141464522	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	1195059	141464522	17674141	1116	6490										
TAS2R38	5726	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	141672602	141672602	+	Silent	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ttggcattgcctgagatcagGatggctgcatgcccagaggg	15	9	1	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TAS2R38-92	NM_176817	exon1	c.C888A	p.I296I	GATCAGGATGGCT	.	234	56	143	2	.	0	0	0	0	0	T	141672602	G	T	141672602	2	4	31	1	0	0	0	0	0	0	0	1	15612	1164	41	3		3	TAS2R38	7	141672602	Silent	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	208080	141672602	17466061	1117	6491										
MGAM	8972	hgsc.bcm.edu;bcgsc.ca	37	chr7	141759759	141759759	+	Frame_Shift_Del	DEL	G	G	-													0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	aaatgatggagacattgtctGgggaaaggtataatcctaag					novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MGAM-70	NM_004668	exon33	c.4052delG	p.W1351fs	TTGTCTGGGGAAA	.	371	110	253	2	.	0	0	0	0	0	-	141759759	G	-	141759759	7	5	31	1	0	1	0	1	0	0	0	0	9569	1357	47	0	4178	0	MGAM	7	141759759	Frame_Shift_Del	DEL	G	TCGA-OR-A5KB-01A-11D-A30A-10	87157	141759759	17378904	1118	6492										
MGAM	8972	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	141805635	141805635	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tattaagcatcgatgtgactGacagaaacatcagcctacat	7	9	1	3	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MGAM-70	NM_004668	exon48	c.G5518A	p.D1840N	GTGACTGACAGAA	.	153	30	94	0	.	0	0	0	0	0	A	141805635	G	A	141805635	3	1	31	1	0	0	0	0	1	0	0	0	9569	1290	45	3	5704	3	MGAM	7	141805635	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	45876	141805635	17333028	1119	6493										
TRPV5	56302	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	142606676	142606676	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cgcaggaaccagcggtccccCagcccgaattcgcacccaca	9	19	0	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TRPV5-177	NM_019841	exon14	c.G1875T	p.L625L	GTCCCCCAGCCCG	.	126	38	104	0	.	0	0	0	0	0	A	142606676	C	A	142606676	2	1	31	1	0	0	0	0	0	0	0	1	16637	581	21	3		3	TRPV5	7	142606676	Silent	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	801041	142606676	16531987	1120	6494										
KEL	3792	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	142638380	142638380	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ggaggggttcaagagagcacCacgtgcacagcggaaatacc	14	10	1	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	KEL-93	NM_000420	exon19	c.G2158T	p.G720C	GAGCACCACGTGC	.	156	51	114	0	.	0	0	0	0	0	A	142638380	C	A	142638380	3	1	31	1	0	0	0	0	1	0	0	0	8163	594	21	3	44	3	KEL	7	142638380	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	31704	142638380	16500283	1121	6495										
KEL	3792	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	142640676	142640676	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	attgacgtcccaaggggacaCcttccacctgtgggaagagg	13	11	0	2	rs150678405	alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	KEL-93	NM_000420	exon15	c.G1600T	p.V534L	GGGACACCTTCCA	.	184	53	125	1	C|1.000;T|0.000	0	0	0	0	0	A	142640676	C	A	142640676	3	1	31	1	0	0	0	0	1	0	0	0	8163	507	18	3	618	3	KEL	7	142640676	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	2296	142640676	16497987	1122	6496										
OR9A2	135924	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	142723927	142723927	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tcccacaggaaaagttgagcGatacatgtagagaaagatac	10	7	0	3	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OR9A2-69	NM_001001658	exon1	c.C293A	p.S98X	TTGAGCGATACAT	.	392	95	250	0	.	0	0	0	0	0	T	142723927	G	T	142723927	4	4	31	1	0	0	0	0	0	1	0	0	11277	1059	37	2	643	2	OR9A2	7	142723927	Nonsense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	83251	142723927	16414736	1123	6497										
OR6V1	346517	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	142749491	142749491	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ctcttgggcttctcctccttTggtgagctgcaggcccttct	10	14	3	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OR6V1-23	NM_001001667	exon1	c.T54C	p.F18F	CTCCTTTGGTGAG	.	173	21	135	0	.	0	0	0	0	0	C	142749491	T	C	142749491	2	2	31	1	0	0	0	0	0	0	0	1	11240	1809	63	4		4	OR6V1	7	142749491	Silent	SNP	T	TCGA-OR-A5KB-01A-11D-A30A-10	25564	142749491	16389172	1124	6498										
OR6V1	346517	broad.mit.edu	37	chr7	142750347	142750347	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cagtgctacaggggcagatgCagaggctgaaaggcctttgc	15	9	0	3	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OR6V1-23	NM_001001667	exon1	c.C910A	p.Q304K	CAGATGCAGAGGC	.	48	9	15	0	.	0	0	0	0	0	A	142750347	C	A	142750347	3	1	31	1	0	0	0	0	1	0	0	0	11240	711	25	3	912	3	OR6V1	7	142750347	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	856	142750347	16388316	1125	6499										
PIP	5304	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	142836633	142836633	+	Silent	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	actgtgcaaattgcagccgtCgttgatgttattcgggaatt	11	7	0	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PIP-91	NM_002652	exon4	c.C339A	p.V113V	AGCCGTCGTTGAT	.	162	36	108	0	.	0	0	0	0	0	A	142836633	C	A	142836633	2	1	31	1	0	0	0	0	0	0	0	1	11964	871	31	2		2	PIP	7	142836633	Silent	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	86286	142836633	16302030	1126	6500										
FAM115C	285966	broad.mit.edu	37	chr7	143421822	143421822	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	aaattctgggagaaggggatGaccagacccctcagtcatgt	12	9	3	3	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FAM115C-68	NM_173678	exon7	c.G2537T	p.X846L	GGGGATGACCAGA	.	163	29	128	0	.	0	0	0	0	0	T	143421822	G	T	143421822	3	4	31	1	0	0	0	0	1	0	0	0	5422	1285	45	3	2878	3	FAM115C	7	143421822	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	585189	143421822	15716841	1127	6501										
FAM115A	9747	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	143573262	143573263	+	Missense_Mutation	DNP	CC	CC	AA													0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cttgtcctcctatgagcaagCcgccaccacatttcatgaac					novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	CC	CC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FAM115A-68	NM_001206938	exon2	c.G439T	p.G147F	GCAAGCCGCCACC	.	187	12	132	0	C|0.999;T|0.001	0	0	0	0	0	AA	143573263	CC	AA	143573262	3	1	31	1	0	0	0	0	1	0	0	0	5421	739	26	3	2357	3	FAM115A	7	143573262	Missense_Mutation	DNP	CC	TCGA-OR-A5KB-01A-11D-A30A-10	151440	143573262	15565401	1128	6502										
OR2F1	26211	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	143657461	143657461	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gtgtgatgccctgcgatactCggccatcatgcatggagggc	14	11	1	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OR2F1-71	NM_012369	exon1	c.C398A	p.S133X	GATACTCGGCCAT	.	429	226	273	0	.	0	0	0	0	0	A	143657461	C	A	143657461	4	1	31	1	0	0	0	0	0	1	0	0	11025	893	31	2	400	2	OR2F1	7	143657461	Nonsense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	84199	143657461	15481202	1129	6503										
OR2F1	26211	ucsc.edu;bcgsc.ca	37	chr7	143657503	143657503	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gtgtgctaggttggccatcaCatcctgggtcagtggcttca	13	10	3	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OR2F1-71	NM_012369	exon1	c.C440A	p.T147K	CCATCACATCCTG	.	508	131	335	2	.	0	0	0	0	0	A	143657503	C	A	143657503	3	1	31	1	0	0	0	0	1	0	0	0	11025	478	17	3	442	3	OR2F1	7	143657503	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	42	143657503	15481160	1130	6504										
OR2A14	135941	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	143826651	143826651	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cctggctgtggcttcctgggTgttcagcttcctcctggctc	12	14	1	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OR2A14-90	NM_001001659	exon1	c.T446A	p.V149E	CCTGGGTGTTCAG	.	232	64	150	0	.	0	0	0	0	0	A	143826651	T	A	143826651	3	1	31	1	0	0	0	0	1	0	0	0	11005	1696	59	5	448	5	OR2A14	7	143826651	Missense_Mutation	SNP	T	TCGA-OR-A5KB-01A-11D-A30A-10	169148	143826651	15312012	1131	6505										
NOBOX	135935	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	144098647	144098647	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gagccccggagcagttcctcCtccccgggtcctgcagccag	12	18	0	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	NOBOX-69	NM_001080413	exon4	c.G336A	p.E112E	TTCCTCCTCCCCG	.	32	8	20	0	.	0	0	0	0	0	T	144098647	C	T	144098647	2	4	31	1	0	0	0	0	0	0	0	1	10541	680	24	3		3	NOBOX	7	144098647	Silent	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	271996	144098647	15040016	1132	6506										
CNTNAP2	26047	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr7	145813997	145813997	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ggctccgcgcgccggctgcgGggcagcgctcctgctgtgga	18	15	0	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CNTNAP2-100	NM_014141	exon1	c.G29C	p.G10A	GCTGCGGGGCAGC	.	71	26	27	0	.	0	0	0	0	0	C	145813997	G	C	145813997	3	2	31	1	0	0	0	0	1	0	0	0	3653	1232	43	3	31	3	CNTNAP2	7	145813997	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	1715350	145813997	13324666	1133	6507										
CNTNAP2	26047	bcgsc.ca	37	chr7	147844680	147844680	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	aacgatgaccagtggcaccgGgtcactgcagagaggaatgt	14	9	1	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CNTNAP2-100	NM_014141	exon17	c.G2652T	p.R884R	GCACCGGGTCACT	.	196	66	136	3	.	0	0	0	0	0	T	147844680	G	T	147844680	2	4	31	1	0	0	0	0	0	0	0	1	3653	1219	43	3		3	CNTNAP2	7	147844680	Silent	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	2030683	147844680	11293983	1134	6508										
ZNF467	168544	hgsc.bcm.edu	37	chr7	149463036	149463036	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tccgggcaggcgcaggggccCtcgccccggtgcagccgctg	17	17	0	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ZNF467-90	NM_207336	exon5	c.G555A	p.E185E	GGGGCCCTCGCCC	.	20	10	2	0	.	0	0	0	0	0	T	149463036	C	T	149463036	2	4	31	1	0	0	0	0	0	0	0	1	17964	680	24	3		3	ZNF467	7	149463036	Silent	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	1618356	149463036	9675627	1135	6509										
ZNF467	168544	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	149466284	149466284	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ttcctccggtgtaggggcctCgtgccctggcagagaatagg	15	11	0	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ZNF467-90	NM_207336	exon4	c.G157T	p.E53X	GGGCCTCGTGCCC	.	101	36	71	0	.	0	0	0	0	0	A	149466284	C	A	149466284	4	1	31	1	0	0	0	0	0	1	0	0	17964	893	31	2	1638	2	ZNF467	7	149466284	Nonsense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	3248	149466284	9672379	1136	6510										
SSPO	23145	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	149486861	149486861	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	agcaccttgcctggcccctcCccaggctccctggacactgc	9	20	0	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_198455	exon31	c.C4635A	p.S1545S	CCCCTCCCCAGGC	.	148	47	116	1	.	0	0	0	0	0	A	149486861	C	A	149486861	2	1	31	1	0	0	0	0	0	0	0	1	15226	610	22	3		3	SSPO	7	149486861	Silent	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	20577	149486861	9651802	1137	6511										
SSPO	23145	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	149518741	149518741	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	accccggagggtgtgatctgCgaagatacggagtgtgcagg	17	8	1	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_198455	exon89	c.C12735A	p.C4245X	GATCTGCGAAGAT	.	155	49	133	3	.	0	0	0	0	0	A	149518741	C	A	149518741	4	1	31	1	0	0	0	0	0	1	0	0	15226	776	27	2	13083	2	SSPO	7	149518741	Nonsense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	31880	149518741	9619922	1138	6512										
SLC4A2	6522	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	150771826	150771826	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gaggggctgggtcatcaaccCcctgggagagaagagcccct	15	12	2	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SLC4A2-90	NM_003040	exon19	c.C2945T	p.P982L	TCAACCCCCTGGG	.	148	51	131	0	.	0	0	0	0	0	T	150771826	C	T	150771826	3	4	31	1	0	0	0	0	1	0	0	0	14689	623	22	3	3015	3	SLC4A2	7	150771826	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	1253085	150771826	8366837	1139	6513										
PRKAG2	51422	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	151478357	151478357	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	agctcatgcgtcgaggggagCgtggcggggactcctggtag	19	9	1	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PRKAG2-658	NM_016203	exon3	c.G347C	p.R116P	GGGGAGCGTGGCG	.	63	22	55	0	.	0	0	0	0	0	G	151478357	C	G	151478357	3	3	31	1	0	0	0	0	1	0	0	0	12533	768	27	2	1418	2	PRKAG2	7	151478357	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	706531	151478357	7660306	1140	6514										
MLL3	58508	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	151947965	151947965	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	aacaattccaggagtggactCctgaccgttgacatctttat	8	10	1	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MLL3-1398	NM_170606	exon12	c.G1708T	p.E570X	TGGACTCCTGACC	.	57	26	50	0	.	0	0	0	0	0	A	151947965	C	A	151947965	4	1	31	1	0	0	0	0	0	1	0	0	9650	864	30	3	13219	3	MLL3	7	151947965	Nonsense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	469608	151947965	7190698	1141	6515										
DPP6	1804	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	153584820	153584820	+	Splice_Site	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	agatgcaggggaacgtgatgGtgagtgccacggacagggcg	19	7	0	3	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DPP6-652	NM_001039350	exon1	c.51+1G>T	.	GTGATGGTGAGTG	.	144	19	111	0	.	0	0	0	0	0	T	153584820	G	T	153584820	5	4	31	1	0	0	0	0	0	0	1	0	4741	1275	44	3	54	3	DPP6	7	153584820	Splice_Site	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	1636855	153584820	5553843	1142	6516										
DPP6	1804	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	chr7	153749961	153749961	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	caacacctcgaggtccttccCcgcgcccccggaggcgagtc	11	19	0	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DPP6-652	NM_130797	exon1	c.C56A	p.P19H	CCTTCCCCGCGCC	.	23	11	16	0	.	0	0	0	0	0	A	153749961	C	A	153749961	3	1	31	1	0	0	0	0	1	0	0	0	4741	623	22	3	113	3	DPP6	7	153749961	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	165141	153749961	5388702	1143	6517										
DPP6	1804	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	154561206	154561206	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tacgccgccatcaatgattcCcgtgtccccatcatggagct	8	15	2	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DPP6-652	NM_130797	exon9	c.C963T	p.S321S	TGATTCCCGTGTC	.	170	66	91	0	.	0	0	0	0	0	T	154561206	C	T	154561206	2	4	31	1	0	0	0	0	0	0	0	1	4741	610	22	3		3	DPP6	7	154561206	Silent	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	811245	154561206	4577457	1144	6518										
DPP6	1804	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	154598776	154598776	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gagaactgcacctacttcagCgcttccttcagccatagcat	7	14	2	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DPP6-652	NM_130797	exon16	c.C1620A	p.S540R	CTTCAGCGCTTCC	.	95	29	76	1	.	0	0	0	0	0	A	154598776	C	A	154598776	3	1	31	1	0	0	0	0	1	0	0	0	4741	767	27	2	1798	2	DPP6	7	154598776	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	37570	154598776	4539887	1145	6519										
NOM1	64434	hgsc.bcm.edu	37	chr7	156742501	156742501	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gacgcgtggtccgcatgaagCgcagaggcgggcgcgggccg	20	12	0	2	rs6969990	byfrequency	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	NOM1-90	NM_138400	exon1	c.C70G	p.R24G	ATGAAGCGCAGAG	.	21	12	0	0	C|0.663;G|0.337	0	0	0	0	0	G	156742501	C	G	156742501	3	3	31	1	0	0	0	0	1	0	0	0	10559	768	27	2	72	2	NOM1	7	156742501	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	2143725	156742501	2396162	1146	6520										
NOM1	64434	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	156743069	156743069	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cgtgccgctgagctttgcacGcgacggtcttgactatattc	11	12	1	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	NOM1-90	NM_138400	exon1	c.G638T	p.R213L	TTGCACGCGACGG	.	157	66	141	1	.	0	0	0	0	0	T	156743069	G	T	156743069	3	4	31	1	0	0	0	0	1	0	0	0	10559	1087	38	2	640	2	NOM1	7	156743069	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	568	156743069	2395594	1147	6521										
DLGAP2	9228	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr8	1497807	1497807	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ctggacaagccgctgctgcaCcaggacgccaagcccgccct	11	18	0	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DLGAP2-22	NM_004745	exon2	c.C948A	p.H316Q	GCTGCACCAGGAC	.	154	90	89	2	.	0	0	0	0	0	A	1497807	C	A	1497807	3	1	31	1	0	0	0	0	1	0	0	0	4571	506	18	3	950	3	DLGAP2	8	1497807	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10		1497807	144866215	1148	6522										
DLGAP2	9228	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	1626470	1626470	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ccaggccacatcaccacggaGgacaaaggccttcagttcgg	11	14	2	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DLGAP2-22	NM_004745	exon9	c.G2139T	p.E713D	CACGGAGGACAAA	.	192	31	161	1	.	0	0	0	0	0	T	1626470	G	T	1626470	3	4	31	1	0	0	0	0	1	0	0	0	4571	991	35	3	2169	3	DLGAP2	8	1626470	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	128663	1626470	144737552	1149	6523										
MYOM2	9172	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr8	2054093	2054093	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	atctatctgggcttcgactgCcaggaaatgacagacgcgtc	11	11	2	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MYOM2-95	NM_003970	exon22	c.C2796A	p.C932X	CGACTGCCAGGAA	.	167	38	237	1	.	0	0	0	0	0	A	2054093	C	A	2054093	4	1	31	1	0	0	0	0	0	1	0	0	10120	747	26	3	2878	3	MYOM2	8	2054093	Nonsense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	427623	2054093	144309929	1150	6524										
MYOM2	9172	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr8	2090321	2090321	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gctgctgcttttgcagagaaGagtaagtacctgttggattg	13	6	0	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MYOM2-95	NM_003970	exon35	c.G4023T	p.K1341N	AGAGAAGAGTAAG	.	117	31	136	0	.	0	0	0	0	0	T	2090321	G	T	2090321	3	4	31	1	0	0	0	0	1	0	0	0	10120	956	33	3	4157	3	MYOM2	8	2090321	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	36228	2090321	144273701	1151	6525										
CSMD1	64478	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	2800005	2800005	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ctgcagtacctgtgtttgtaGaggtaaaatgcaaaccctga	10	8	0	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CSMD1-86	NM_033225	exon69	c.C10524A	p.L3508L	TTTGTAGAGGTAA	.	32	8	69	0	.	0	0	0	0	0	T	2800005	G	T	2800005	2	4	31	1	0	0	0	0	0	0	0	1	3950	929	33	3		3	CSMD1	8	2800005	Silent	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	709684	2800005	143564017	1152	6526										
CSMD1	64478	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr8	2855623	2855623	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	caaatagcccgtgttgcaggTgaaattcacgacatcattca	8	10	3	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CSMD1-86	NM_033225	exon54	c.A8287T	p.T2763S	TGCAGGTGAAATT	.	165	44	219	2	.	0	0	0	0	0	A	2855623	T	A	2855623	3	1	31	1	0	0	0	0	1	0	0	0	3950	1696	59	5	2475	5	CSMD1	8	2855623	Missense_Mutation	SNP	T	TCGA-OR-A5KB-01A-11D-A30A-10	55618	2855623	143508399	1153	6527										
CSMD1	64478	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr8	2910065	2910065	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tgcttgctggctggattcaaGcttgaagccctcatgacatt	10	10	2	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CSMD1-86	NM_033225	exon50	c.C7579A	p.L2527I	ATTCAAGCTTGAA	.	117	24	160	0	.	0	0	0	0	0	T	2910065	G	T	2910065	3	4	31	1	0	0	0	0	1	0	0	0	3950	971	34	3	3199	3	CSMD1	8	2910065	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	54442	2910065	143453957	1154	6528										
CSMD1	64478	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	3216806	3216806	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tcccacaccaaagtgaaaacCaattcttcggctgaaggcag	8	12	1	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CSMD1-86	NM_033225	exon21	c.G3172C	p.G1058R	GAAAACCAATTCT	.	85	11	129	1	.	0	0	0	0	0	G	3216806	C	G	3216806	3	3	31	1	0	0	0	0	1	0	0	0	3950	594	21	3	7722	3	CSMD1	8	3216806	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	306741	3216806	143147216	1155	6529										
AGPAT5	55326	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr8	6599206	6599206	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	atcttgtgatttttccagaaGgtacaaggtataatccagag	9	6	1	3	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	AGPAT5-90	NM_018361	exon5	c.G520A	p.G174S	CCAGAAGGTACAA	.	55	21	76	0	.	0	0	0	0	0	A	6599206	G	A	6599206	3	1	31	1	0	0	0	0	1	0	0	0	390	1000	35	3	538	3	AGPAT5	8	6599206	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	3382400	6599206	139764816	1156	6530										
TNKS	8658	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr8	9620743	9620743	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	aagataaagaatatcagtcaGtggaagaagaggtaatatac	10	3	2	4	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TNKS-660	NM_003747	exon22	c.G3361T	p.V1121L	CAGTCAGTGGAAG	.	47	24	25	0	.	0	0	0	0	0	T	9620743	G	T	9620743	3	4	31	1	0	0	0	0	1	0	0	0	16356	1029	36	3	3447	3	TNKS	8	9620743	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	3021537	9620743	136743279	1157	6531										
PRSS55	203074	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr8	10389053	10389053	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	aggttggggccagaccaatgCtggtatgtgactgctcagct	14	9	1	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PRSS55-91	NM_001197020	exon3	c.C596G	p.A199G	CCAATGCTGGTAT	.	62	30	62	0	.	0	0	0	0	0	G	10389053	C	G	10389053	3	3	31	1	0	0	0	0	1	0	0	0	12666	797	28	3	606	3	PRSS55	8	10389053	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	768310	10389053	135974969	1158	6532										
RP1L1	94137	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr8	10467199	10467199	+	Frame_Shift_Del	DEL	C	C	-													0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	aaccaggctcaagctgggagCcactctgcctctcgctggca					novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	RP1L1-139	NM_178857	exon4	c.4409delG	p.G1470fs	TGGGAGCCACTCT	.	60	19	30	0	.	0	0	0	0	0	-	10467199	C	-	10467199	7	5	31	1	0	1	0	1	0	0	0	0	13568	739	26	0	2797	0	RP1L1	8	10467199	Frame_Shift_Del	DEL	C	TCGA-OR-A5KB-01A-11D-A30A-10	78146	10467199	135896823	1159	6533										
GATA4	2626	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	11607705	11607705	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ccgcaatgcggagggcgagcCtgtgtgcaatgcctgcggcc	16	13	0	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GATA4-90	NM_002052	exon4	c.C869A	p.P290H	GCGAGCCTGTGTG	.	78	9	46	0	.	0	0	0	0	0	A	11607705	C	A	11607705	3	1	31	1	0	0	0	0	1	0	0	0	6276	681	24	3	879	3	GATA4	8	11607705	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	1140506	11607705	134756317	1160	6534										
USP17L2	377630	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	11996101	11996101	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	agcaagctgtcttgccacagGagccaaatcatcacagaggt	10	11	3	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	USP17L2-435	NM_201402	exon1	c.C169A	p.P57T	CCACAGGAGCCAA	.	66	12	65	2	.	0	0	0	0	0	T	11996101	G	T	11996101	3	4	31	1	0	0	0	0	1	0	0	0	17086	1174	41	3	1427	3	USP17L2	8	11996101	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	388396	11996101	134367921	1161	6535										
PCM1	5108	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr8	17796410	17796410	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	aacagagaaacgattggatcAgcacagtgtaaagagttgtt	11	5	1	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PCM1-742	NM_006197	exon5	c.A504T	p.S168S	TGGATCAGCACAG	.	115	33	160	0	.	0	0	0	0	0	T	17796410	A	T	17796410	2	4	31	1	0	0	0	0	0	0	0	1	11613	175	7	5		5	PCM1	8	17796410	Silent	SNP	A	TCGA-OR-A5KB-01A-11D-A30A-10	5800309	17796410	128567612	1162	6536										
NAT2	10	broad.mit.edu;bcgsc.ca	37	chr8	18257900	18257900	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gctgggtctggaagctcctcCcagatgtggcagcctctaga	13	12	2	2	rs144828000	alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	NAT2-516	NM_000015	exon2	c.C387A	p.S129S	CTCCTCCCAGATG	.	47	10	61	0	C|1.000;T|0.000	0	0	0	0	0	A	18257900	C	A	18257900	2	1	31	1	0	0	0	0	0	0	0	1	10205	610	22	3		3	NAT2	8	18257900	Silent	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	461490	18257900	128106122	1163	6537										
NAT2	10	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	18258377	18258377	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	aaacctggtgatggatccctTactatttagaataaggaaca	8	7	0	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	NAT2-516	NM_000015	exon2	c.T864A	p.L288L	ATCCCTTACTATT	.	30	8	33	0	.	0	0	0	0	0	A	18258377	T	A	18258377	2	1	31	1	0	0	0	0	0	0	0	1	10205	1741	61	5		5	NAT2	8	18258377	Silent	SNP	T	TCGA-OR-A5KB-01A-11D-A30A-10	477	18258377	128105645	1164	6538										
DOK2	9046	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	21769421	21769421	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cgccccctcacctgtgactgCgctgctgtacaattcatttt	7	15	2	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DOK2-226	NM_003974	exon3	c.G424A	p.A142T	TGACTGCGCTGCT	.	39	9	51	0	.	0	0	0	0	0	T	21769421	C	T	21769421	3	4	31	1	0	0	0	0	1	0	0	0	4708	768	27	1	826	1	DOK2	8	21769421	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	3511044	21769421	124594601	1165	6539										
XPO7	23039	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr8	21842176	21842176	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gagatggcctggaagatcccCtggaggatacggggctggtc	17	9	0	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	XPO7-273	NM_015024	exon12	c.C1297G	p.L433V	GATCCCCTGGAGG	.	41	14	47	0	.	0	0	0	0	0	G	21842176	C	G	21842176	3	3	31	1	0	0	0	0	1	0	0	0	17487	680	24	3	1395	3	XPO7	8	21842176	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	72755	21842176	124521846	1166	6540										
PIWIL2	55124	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr8	22147806	22147806	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	acagatggagggctcttcctGctagctgatgtctcccataa	10	11	2	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PIWIL2-91	NM_001135721	exon10	c.G1128T	p.L376L	CTTCCTGCTAGCT	.	121	40	117	0	.	0	0	0	0	0	T	22147806	G	T	22147806	2	4	31	1	0	0	0	0	0	0	0	1	11987	1306	46	3		3	PIWIL2	8	22147806	Silent	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	305630	22147806	124216216	1167	6541										
LOXL2	4017	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr8	23179795	23179795	+	Splice_Site	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gaggtggatgggtccgatccCtgcaaggggagaataaacat	15	7	0	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	LOXL2-272	NM_002318	exon8	c.1151-1G>A	.	CGATCCCTGCAAG	.	111	33	115	0	.	0	0	0	0	0	T	23179795	C	T	23179795	5	4	31	1	0	0	0	0	0	0	1	0	8927	695	24	3	1206	3	LOXL2	8	23179795	Splice_Site	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	1031989	23179795	123184227	1168	6542										
NKX3-1	4824	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr8	23538992	23538992	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tgggcccgttcaggggccgaCaggtacttctgatggctgaa	15	10	2	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	NKX3-1-90	NM_006167	exon2	c.G447T	p.L149L	GGCCGACAGGTAC	.	64	21	81	0	.	0	0	0	0	0	A	23538992	C	A	23538992	2	1	31	1	0	0	0	0	0	0	0	1	10484	465	17	3		3	NKX3-1	8	23538992	Silent	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	359197	23538992	122825030	1169	6543										
NEFL	4747	hgsc.bcm.edu	37	chr8	24813479	24813479	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ggccctcggcgtcctcgcggCtcagcacctcctcttcatag	10	18	3	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	NEFL-24	NM_006158	exon1	c.G551T	p.S184I	TCGCGGCTCAGCA	.	40	12	6	0	.	0	0	0	0	0	A	24813479	C	A	24813479	3	1	31	1	0	0	0	0	1	0	0	0	10344	797	28	3	1097	3	NEFL	8	24813479	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	1274487	24813479	121550543	1170	6544										
DOCK5	80005	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr8	25101270	25101270	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ttcacatcctggagatgtacGagggtaagtctggctggcct	13	9	2	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DOCK5-71	NM_024940	exon2	c.G124T	p.E42X	ATGTACGAGGGTA	.	55	18	41	0	.	0	0	0	0	0	T	25101270	G	T	25101270	4	4	31	1	0	0	0	0	0	1	0	0	4701	1059	37	2	130	2	DOCK5	8	25101270	Nonsense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	287791	25101270	121262752	1171	6545										
SCARA3	51435	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr8	27516983	27516983	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ctcaacgtccggaacctctcCatgatcgtggaggagatgaa	11	11	2	3	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SCARA3-228	NM_182826	exon5	c.C1296T	p.S432S	CCTCTCCATGATC	.	93	17	107	0	.	0	0	0	0	0	T	27516983	C	T	27516983	2	4	31	1	0	0	0	0	0	0	0	1	13914	581	21	3		3	SCARA3	8	27516983	Silent	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	2415713	27516983	118847039	1172	6546										
ESCO2	157570	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr8	27646479	27646479	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gcatcaccacaggtttctggAaggaatcaaatatgtggtga	11	7	3	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ESCO2-90	NM_001017420	exon7	c.A1247T	p.E416V	TTCTGGAAGGAAT	.	59	17	83	0	.	0	0	0	0	0	T	27646479	A	T	27646479	3	4	31	1	0	0	0	0	1	0	0	0	5262	246	9	5	1269	5	ESCO2	8	27646479	Missense_Mutation	SNP	A	TCGA-OR-A5KB-01A-11D-A30A-10	129496	27646479	118717543	1173	6547										
SCARA5	286133	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr8	27779158	27779158	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	aggcgcaggtcctcggtgacCgcgttgagcatggccagctc	15	13	0	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SCARA5-91	NM_173833	exon4	c.G846T	p.A282A	GGTGACCGCGTTG	.	213	61	127	1	.	0	0	0	0	0	A	27779158	C	A	27779158	2	1	31	1	0	0	0	0	0	0	0	1	13915	639	23	2		2	SCARA5	8	27779158	Silent	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	132679	27779158	118584864	1174	6548										
PURG	29942	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr8	30889911	30889911	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ttgccggtggcctttcaggcCcaggtgggcatagtgctcga	15	11	1	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PURG-131	NM_013357	exon1	c.G388T	p.G130C	TCAGGCCCAGGTG	.	39	16	101	0	.	0	0	0	0	0	A	30889911	C	A	30889911	3	1	31	1	0	0	0	0	1	0	0	0	12864	623	22	3	768	3	PURG	8	30889911	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	3110753	30889911	115474111	1175	6549										
PPAPDC1B	84513	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr8	38123741	38123741	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ggtgacagaaaggcacagaaCctccaagatttcccacggcc	10	13	0	4	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_032483	exon6	c.G552T	p.R184S	ACAGAACCTCCAA	.	333	58	403	0	.	0	0	0	0	0	A	38123741	C	A	38123741	3	1	31	1	0	0	0	0	1	0	0	0	12323	506	18	3	271	3	PPAPDC1B	8	38123741	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	7233830	38123741	108240281	1176	6550										
ADAM9	8754	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr8	38880770	38880770	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gttgggggtgctggtgatgtGctggggaacttcgtgcagtg	20	5	0	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ADAM9-227	NM_003816	exon9	c.G840T	p.V280V	TGATGTGCTGGGG	.	184	81	130	0	.	0	0	0	0	0	T	38880770	G	T	38880770	2	4	31	1	0	0	0	0	0	0	0	1	253	1306	46	3		3	ADAM9	8	38880770	Silent	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	757029	38880770	107483252	1177	6551										
PXDNL	137902	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr8	52233364	52233364	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ctcacaaatgcagtgagtgcAgtcttctttcatccagcgct	8	12	4	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PXDNL-70	NM_144651	exon22	c.T4240G	p.C1414G	GAGTGCAGTCTTC	.	104	52	69	0	.	0	0	0	0	0	C	52233364	A	C	52233364	3	2	31	1	0	0	0	0	1	0	0	0	12883	188	7	5	159	5	PXDNL	8	52233364	Missense_Mutation	SNP	A	TCGA-OR-A5KB-01A-11D-A30A-10	13352594	52233364	94130658	1178	6552										
PXDNL	137902	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	52284587	52284587	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	acccggctcagggacgcctgCttcagctgagtgagttgtgc	14	12	2	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PXDNL-70	NM_144651	exon19	c.G3747T	p.K1249N	CGCCTGCTTCAGC	.	124	63	98	1	.	0	0	0	0	0	A	52284587	C	A	52284587	3	1	31	1	0	0	0	0	1	0	0	0	12883	796	28	3	664	3	PXDNL	8	52284587	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	51223	52284587	94079435	1179	6553										
RP1	6101	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	55537620	55537620	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	attctctgcagatgtgtcacCtatggagcgaagcagtaatc	10	9	2	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	RP1-102	NM_006269	exon4	c.C1178A	p.P393H	TGTCACCTATGGA	.	216	62	198	2	.	0	0	0	0	0	A	55537620	C	A	55537620	3	1	31	1	0	0	0	0	1	0	0	0	13567	681	24	3	1188	3	RP1	8	55537620	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	3253033	55537620	90826402	1180	6554										
XKR4	114786	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr8	56435991	56435991	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ttcttcaccatcgccgccagGgtcatcacgtttgccctctt	7	16	5	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	XKR4-92	NM_052898	exon3	c.G1158T	p.R386S	CGCCAGGGTCATC	.	270	115	186	0	.	0	0	0	0	0	T	56435991	G	T	56435991	3	4	31	1	0	0	0	0	1	0	0	0	17471	1223	43	3	1168	3	XKR4	8	56435991	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	898371	56435991	89928031	1181	6555										
TOX	9760	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr8	59750748	59750748	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	atggcggcctgagtatcacgAaagaataacgcataggcaga	12	8	1	3	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TOX-227	NM_014729	exon5	c.T816A	p.F272L	ATCACGAAAGAAT	.	164	73	136	0	.	0	0	0	0	0	T	59750748	A	T	59750748	3	4	31	1	0	0	0	0	1	0	0	0	16415	243	9	5	784	5	TOX	8	59750748	Missense_Mutation	SNP	A	TCGA-OR-A5KB-01A-11D-A30A-10	3314757	59750748	86613274	1182	6556										
CHD7	55636	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr8	61654436	61654436	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gctccatgtggggccccaggGctgttcaggtaccagaccag	14	13	1	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CHD7-141	NM_017780	exon2	c.G445T	p.A149S	CCCAGGGCTGTTC	.	231	116	129	0	.	0	0	0	0	0	T	61654436	G	T	61654436	3	4	31	1	0	0	0	0	1	0	0	0	3336	1203	42	3	447	3	CHD7	8	61654436	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	1903688	61654436	84709586	1183	6557										
CHD7	55636	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr8	61765660	61765660	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	accctgagttatccttcttgGatgcacataaaaactttgct	6	10	1	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CHD7-141	NM_017780	exon31	c.G6376C	p.D2126H	TTCTTGGATGCAC	.	249	110	181	0	.	0	0	0	0	0	C	61765660	G	C	61765660	3	2	31	1	0	0	0	0	1	0	0	0	3336	1174	41	3	6494	3	CHD7	8	61765660	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	111224	61765660	84598362	1184	6558										
YTHDF3	253943	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr8	64099049	64099049	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	agttatggctatccacctagTtctcttgggagagctattac	9	9	1	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	.	.	.	.	ACCTAGTTCTCTT	.	262	84	185	0	.	0	0	0	0	0	G	64099049	T	G	64099049	3	3	31	1	0	0	0	0	1	0	0	0	17538	1725	60	5	493	5	YTHDF3	8	64099049	Missense_Mutation	SNP	T	TCGA-OR-A5KB-01A-11D-A30A-10	2333389	64099049	82264973	1185	6559										
VCPIP1	80124	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr8	67576973	67576973	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	agaaacagtcctgggttgccCtttttgttcttgttttaact	8	8	1	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	VCPIP1-662	NM_025054	exon1	c.G2221T	p.G741W	GTTGCCCTTTTTG	.	179	38	131	1	.	0	0	0	0	0	A	67576973	C	A	67576973	3	1	31	1	0	0	0	0	1	0	0	0	17179	681	24	3	1459	3	VCPIP1	8	67576973	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	3477924	67576973	78787049	1186	6560										
PREX2	80243	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr8	69069640	69069640	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	agataaatgcagcctcactgGaaaaggtcaaacagtacaac	8	9	2	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PREX2-390	NM_024870	exon35	c.G4315T	p.E1439X	TCACTGGAAAAGG	.	295	94	208	0	.	0	0	0	0	0	T	69069640	G	T	69069640	4	4	31	1	0	0	0	0	0	1	0	0	12509	1175	41	3	4682	3	PREX2	8	69069640	Nonsense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	1492667	69069640	77294382	1187	6561										
PRDM14	63978	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	70981760	70981760	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tggctgctgctcaggaagggCggcacttccctggggacgtg	17	11	1	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PRDM14-93	NM_024504	exon2	c.G336T	p.P112P	GAAGGGCGGCACT	.	98	27	70	1	.	0	0	0	0	0	A	70981760	C	A	70981760	2	1	31	1	0	0	0	0	0	0	0	1	12487	755	27	2		2	PRDM14	8	70981760	Silent	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	1912120	70981760	75382262	1188	6562										
NCOA2	10499	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	71036168	71036168	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	acgtaggcacggaggtcactGaggtcatgctgatctgtcct	13	10	3	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	NCOA2-639	NM_006540	exon21	c.C4244T	p.S1415L	GTCACTGAGGTCA	.	323	43	206	2	.	0	0	0	0	0	A	71036168	G	A	71036168	3	1	31	1	0	0	0	0	1	0	0	0	10258	1294	45	3	162	3	NCOA2	8	71036168	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	54408	71036168	75327854	1189	6563										
KCNB2	9312	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr8	73480116	73480116	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ggcctcaaccacgaagtcctGtggagaacgctggacaggct	13	12	1	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	KCNB2-158	NM_004770	exon2	c.G147T	p.L49L	AGTCCTGTGGAGA	.	199	59	168	0	.	0	0	0	0	0	T	73480116	G	T	73480116	2	4	31	1	0	0	0	0	0	0	0	1	8034	1364	48	3		3	KCNB2	8	73480116	Silent	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	2443948	73480116	72883906	1190	6564										
KCNB2	9312	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	73849028	73849028	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gagagtccgccaacacaaagGactccgccgacgataatcac	9	14	1	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	KCNB2-158	NM_004770	exon3	c.G1438T	p.D480Y	ACAAAGGACTCCG	.	115	32	86	2	.	0	0	0	0	0	T	73849028	G	T	73849028	3	4	31	1	0	0	0	0	1	0	0	0	8034	1174	41	3	1444	3	KCNB2	8	73849028	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	368912	73849028	72514994	1191	6565										
ZFHX4	79776	ucsc.edu;bcgsc.ca	37	chr8	77617610	77617610	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gtctccctcagccactcatcGtctgagtctagcaagatgtc	8	14	5	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ZFHX4-98	NM_024721	exon2	c.G1287T	p.S429S	CTCATCGTCTGAG	.	163	36	142	2	.	0	0	0	0	0	T	77617610	G	T	77617610	2	4	31	1	0	0	0	0	0	0	0	1	17672	1132	40	2		2	ZFHX4	8	77617610	Silent	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	3768582	77617610	68746412	1192	6566										
ZFHX4	79776	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr8	77618388	77618388	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ctcaccccaggcttgcccggGgtgagagttacacgtgtggc	14	13	1	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ZFHX4-98	NM_024721	exon2	c.G2065T	p.G689C	GCCCGGGGTGAGA	.	119	73	119	0	.	0	0	0	0	0	T	77618388	G	T	77618388	3	4	31	1	0	0	0	0	1	0	0	0	17672	1232	43	3	2067	3	ZFHX4	8	77618388	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	778	77618388	68745634	1193	6567										
ZFHX4	79776	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr8	77620165	77620165	+	Frame_Shift_Del	DEL	C	C	-													0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gtggaggttgaagtgtattgCcattggcaaccctgttcacc					novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ZFHX4-98	NM_024721	exon3	c.2975delC	p.A992fs	GTATTGCCATTGG	.	290	69	193	0	.	0	0	0	0	0	-	77620165	C	-	77620165	7	5	31	1	0	1	0	1	0	0	0	0	17672	739	26	0	2981	0	ZFHX4	8	77620165	Frame_Shift_Del	DEL	C	TCGA-OR-A5KB-01A-11D-A30A-10	1777	77620165	68743857	1194	6568										
ZFHX4	79776	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr8	77763363	77763363	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	aagtatcgctgtaaccattgTagcttggctttcaaaactat	7	8	1	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ZFHX4-98	NM_024721	exon10	c.T4206C	p.C1402C	CCATTGTAGCTTG	.	141	43	159	1	.	0	0	0	0	0	C	77763363	T	C	77763363	2	2	31	1	0	0	0	0	0	0	0	1	17672	1644	57	4		4	ZFHX4	8	77763363	Silent	SNP	T	TCGA-OR-A5KB-01A-11D-A30A-10	143198	77763363	68600659	1195	6569										
ZFHX4	79776	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr8	77763737	77763737	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cttaccttttagaaaagggcCcaattttacgatggaaaaat	7	7	0	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ZFHX4-98	NM_024721	exon10	c.C4580A	p.P1527H	AAGGGCCCAATTT	.	247	78	172	1	.	0	0	0	0	0	A	77763737	C	A	77763737	3	1	31	1	0	0	0	0	1	0	0	0	17672	623	22	3	4614	3	ZFHX4	8	77763737	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	374	77763737	68600285	1196	6570										
ZFHX4	79776	broad.mit.edu;bcgsc.ca	37	chr8	77764446	77764446	+	Silent	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ccaggctctgccacatttggGatgcctggcatgacaggaat	12	11	1	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ZFHX4-98	NM_024721	exon10	c.G5289T	p.G1763G	ATTTGGGATGCCT	.	65	33	62	1	.	0	0	0	0	0	T	77764446	G	T	77764446	2	4	31	1	0	0	0	0	0	0	0	1	17672	1161	41	3		3	ZFHX4	8	77764446	Silent	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	709	77764446	68599576	1197	6571										
ZFHX4	79776	ucsc.edu;bcgsc.ca	37	chr8	77766416	77766416	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	aaagcagagtgacccctctcCcccttctcaaggcaccaaac	6	17	2	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ZFHX4-98	NM_024721	exon10	c.C7259A	p.P2420H	CCTCTCCCCCTTC	.	227	104	172	2	.	0	0	0	0	0	A	77766416	C	A	77766416	3	1	31	1	0	0	0	0	1	0	0	0	17672	623	22	3	7293	3	ZFHX4	8	77766416	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	1970	77766416	68597606	1198	6572										
ZFHX4	79776	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr8	77776722	77776722	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gctagaagacttagataattCtttggaagtgaaggctaagc	11	5	1	4	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ZFHX4-98	NM_024721	exon11	c.C10772G	p.S3591C	ATAATTCTTTGGA	.	262	38	178	0	.	0	0	0	0	0	G	77776722	C	G	77776722	3	3	31	1	0	0	0	0	1	0	0	0	17672	913	32	3	10810	3	ZFHX4	8	77776722	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	10306	77776722	68587300	1199	6573										
ZBTB10	65986	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr8	81412557	81412557	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cgaatttagaagattgctcaGtaatgcagccacctgttgcc	9	10	1	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ZBTB10-522	NM_023929	exon2	c.G1801T	p.V601L	TGCTCAGTAATGC	.	143	72	131	0	.	0	0	0	0	0	T	81412557	G	T	81412557	3	4	31	1	0	0	0	0	1	0	0	0	17560	1029	36	3	1807	3	ZBTB10	8	81412557	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	3635835	81412557	64951465	1200	6574										
PMP2	5375	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr8	82359617	82359617	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	aggtgcccaggaatttgttgCtcatcgtgatgggtgagagc	15	7	1	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PMP2-90	NM_002677	exon1	c.G5A	p.S2N	TTGTTGCTCATCG	.	122	37	110	0	.	0	0	0	0	0	T	82359617	C	T	82359617	3	4	31	1	0	0	0	0	1	0	0	0	12167	797	28	3	409	3	PMP2	8	82359617	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	947060	82359617	64004405	1201	6575										
CA13	377677	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr8	86162997	86162997	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cactggaaggaatttttcccTattgctgatggtgatcagca	10	8	1	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CA13-90	NM_198584	exon2	c.T66A	p.P22P	TTTCCCTATTGCT	.	234	104	183	0	.	0	0	0	0	0	A	86162997	T	A	86162997	2	1	31	1	0	0	0	0	0	0	0	1	2520	1509	53	5		5	CA13	8	86162997	Silent	SNP	T	TCGA-OR-A5KB-01A-11D-A30A-10	3803380	86162997	60201025	1202	6576										
PSKH2	85481	bcgsc.ca	37	chr8	87076709	87076709	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gtaacgatggctaacccgccGcaggacgctcagctcagaca	11	14	2	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PSKH2-385	NM_033126	exon2	c.C337A	p.R113R	CCCGCCGCAGGAC	.	152	63	103	3	.	0	0	0	0	0	T	87076709	G	T	87076709	2	4	31	1	0	0	0	0	0	0	0	1	12697	1086	38	2		2	PSKH2	8	87076709	Silent	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	913712	87076709	59287313	1203	6577										
ATP6V0D2	245972	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	87162446	87162446	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	caaccttcggcaaactctatCctgaggggttgcggctgttg	12	11	1	1	rs187338795	alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ATP6V0D2-90	NM_152565	exon6	c.C745A	p.P249T	CTCTATCCTGAGG	.	202	69	106	1	C|0.999;T|0.001	0	0	0	0	0	A	87162446	C	A	87162446	3	1	31	1	0	0	0	0	1	0	0	0	1175	855	30	3	767	3	ATP6V0D2	8	87162446	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	85737	87162446	59201576	1204	6578										
DCAF4L2	138009	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr8	88885067	88885067	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cagccatgagcagccctggtGctcctcggaagcccccgagg	13	16	0	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DCAF4L2-91	NM_152418	exon1	c.C1133A	p.A378E	CCTGGTGCTCCTC	.	91	32	68	0	.	0	0	0	0	0	T	88885067	G	T	88885067	3	4	31	1	0	0	0	0	1	0	0	0	4278	1319	46	3	58	3	DCAF4L2	8	88885067	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	1722621	88885067	57478955	1205	6579										
TMEM55A	55529	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr8	92008967	92008967	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gtggaagtgcactacccactGaggagctgcaaattcatgaa	11	9	1	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TMEM55A-90	NM_018710	exon6	c.C545G	p.S182X	CCCACTGAGGAGC	.	216	97	161	0	.	0	0	0	0	0	C	92008967	G	C	92008967	4	2	31	1	0	0	0	0	0	1	0	0	16218	1294	45	3	236	3	TMEM55A	8	92008967	Nonsense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	3123900	92008967	54355055	1206	6580										
RUNX1T1	862	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr8	92972688	92972688	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gcaaaatgagccacagtatcGggctgtgttacagccactgc	11	11	0	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	RUNX1T1-1196	NM_001198679	exon12	c.C1774A	p.R592R	AGTATCGGGCTGT	.	86	26	72	0	.	0	0	0	0	0	T	92972688	G	T	92972688	2	4	31	1	0	0	0	0	0	0	0	1	13782	1124	39	2		2	RUNX1T1	8	92972688	Silent	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	963721	92972688	53391334	1207	6581										
RAD54B	25788	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr8	95403988	95403988	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gataaagctcaatctgtagtGctcctggtcggcaaaagaca	10	9	2	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	RAD54B-539	NM_012415	exon10	c.C1658A	p.A553E	TGTAGTGCTCCTG	.	137	31	106	1	.	0	0	0	0	0	T	95403988	G	T	95403988	3	4	31	1	0	0	0	0	1	0	0	0	13027	1319	46	3	1098	3	RAD54B	8	95403988	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	2431300	95403988	50960034	1208	6582										
FBXO43	286151	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr8	101154328	101154328	+	Frame_Shift_Del	DEL	C	C	-													0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gttgacaattggaggagagtCcgccccatttcctgcttcag					novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FBXO43-226	NM_001029860	exon2	c.154delG	p.D52fs	GAGAGTCCGCCCC	.	104	35	56	0	.	0	0	0	0	0	-	101154328	C	-	101154328	7	5	31	1	0	1	0	1	0	0	0	0	5771	855	30	0	1988	0	FBXO43	8	101154328	Frame_Shift_Del	DEL	C	TCGA-OR-A5KB-01A-11D-A30A-10	5750340	101154328	45209694	1209	6583										
PABPC1	26986	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	101725319	101725319	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	aatacagaccacttactttcTgtgcatcttcatgcctttca	4	12	4	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PABPC1-68	NM_002568	exon5	c.A734C	p.Q245P	ACTTTCTGTGCAT	.	107	50	120	2	.	0	0	0	0	0	G	101725319	T	G	101725319	3	3	31	1	0	0	0	0	1	0	0	0	11392	1580	55	5	1216	5	PABPC1	8	101725319	Missense_Mutation	SNP	T	TCGA-OR-A5KB-01A-11D-A30A-10	570991	101725319	44638703	1210	6584										
RIMS2	9699	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr8	104948841	104948841	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ggaacccaaatggaaccaaaCattcatttattctccagtcc	5	12	2	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	RIMS2-279	NM_001100117	exon13	c.C2438T	p.T813I	ACCAAACATTCAT	.	106	26	80	0	.	0	0	0	0	0	T	104948841	C	T	104948841	3	4	31	1	0	0	0	0	1	0	0	0	13403	478	17	3	2614	3	RIMS2	8	104948841	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	3223522	104948841	41415181	1211	6585										
RIMS2	9699	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr8	105263996	105263996	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ggcccctctgacaagaagagCttcccaatcatctctggaaa	8	13	3	3	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	RIMS2-279	NM_001100117	exon24	c.C3998A	p.A1333D	GAAGAGCTTCCCA	.	153	49	120	0	.	0	0	0	0	0	A	105263996	C	A	105263996	3	1	31	1	0	0	0	0	1	0	0	0	13403	797	28	3	4288	3	RIMS2	8	105263996	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	315155	105263996	41100026	1212	6586										
DPYS	1807	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr8	105405152	105405152	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	aatagtcacaaggggcacccCgtggcaaaccatgccctcga	10	14	1	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DPYS-229	NM_001385	exon8	c.G1303A	p.G435R	GCACCCCGTGGCA	.	107	11	98	0	.	0	0	0	0	0	T	105405152	C	T	105405152	3	4	31	1	0	0	0	0	1	0	0	0	4757	652	23	1	264	1	DPYS	8	105405152	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	141156	105405152	40958870	1213	6587										
LRP12	29967	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr8	105511738	105511738	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ctggatccttgaatatcaaaAtcctgaaaactgaaaaaaaa	5	7	1	3	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	LRP12-90	NM_013437	exon4	c.T282G	p.D94E	ATCAAAATCCTGA	.	26	10	19	0	.	0	0	0	0	0	C	105511738	A	C	105511738	3	2	31	1	0	0	0	0	1	0	0	0	8981	98	4	5	2313	5	LRP12	8	105511738	Missense_Mutation	SNP	A	TCGA-OR-A5KB-01A-11D-A30A-10	106586	105511738	40852284	1214	6588										
ZFPM2	23414	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr8	106814687	106814687	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	caagatgtgatatctttccaGgaattgtctctaaacacttg	7	8	2	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ZFPM2-139	NM_012082	exon8	c.G2377T	p.G793X	TTTCCAGGAATTG	.	276	76	231	0	.	0	0	0	0	0	T	106814687	G	T	106814687	4	4	31	1	0	0	0	0	0	1	0	0	17695	1001	35	3	2407	3	ZFPM2	8	106814687	Nonsense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	1302949	106814687	39549335	1215	6589										
PKHD1L1	93035	bcgsc.ca	37	chr8	110457146	110457146	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cgtgaccataaaaggctctgGatttgccgtttcttctgcag	10	10	3	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PKHD1L1-145	NM_177531	exon38	c.G5048C	p.G1683A	GCTCTGGATTTGC	.	342	147	315	4	.	0	0	0	0	0	C	110457146	G	C	110457146	3	2	31	1	0	0	0	0	1	0	0	0	12001	1174	41	3	5198	3	PKHD1L1	8	110457146	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	3642459	110457146	35906876	1216	6590										
PKHD1L1	93035	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	110464351	110464351	+	Splice_Site	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	atgttttccctcttttttacAgtgaaaatatggaggatgtt	8	5	1	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PKHD1L1-145	NM_177531	exon42	c.6351-2A>T	.	TTTTACAGTGAAA	.	126	64	121	0	.	0	0	0	0	0	T	110464351	A	T	110464351	5	4	31	1	0	0	0	0	0	0	1	0	12001	202	7	5	6515	5	PKHD1L1	8	110464351	Splice_Site	SNP	A	TCGA-OR-A5KB-01A-11D-A30A-10	7205	110464351	35899671	1217	6591										
PKHD1L1	93035	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr8	110502235	110502235	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cagtggtcaagaaggcttcaGggatagcacagatccaagat	12	8	2	3	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PKHD1L1-145	NM_177531	exon60	c.G9935T	p.R3312M	GCTTCAGGGATAG	.	260	71	181	0	.	0	0	0	0	0	T	110502235	G	T	110502235	3	4	31	1	0	0	0	0	1	0	0	0	12001	1000	35	3	10173	3	PKHD1L1	8	110502235	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	37884	110502235	35861787	1218	6592										
CSMD3	114788	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	113237100	113237100	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	acatgggattttcaaaagctGcttggccattgttattttca	8	7	2	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CSMD3-1132	NM_198123	exon71	c.C11024G	p.A3675G	AAAGCTGCTTGGC	.	264	82	258	1	.	0	0	0	0	0	C	113237100	G	C	113237100	3	2	31	1	0	0	0	0	1	0	0	0	3952	1319	46	3	103	3	CSMD3	8	113237100	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	2734865	113237100	33126922	1219	6593										
CSMD3	114788	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr8	113516042	113516042	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tgtattctagatgaaatccaGtgtaactaacagatccatca	6	8	2	3	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CSMD3-1132	NM_198123	exon30	c.C5060A	p.T1687N	AATCCAGTGTAAC	.	106	48	78	0	.	0	0	0	0	0	T	113516042	G	T	113516042	3	4	31	1	0	0	0	0	1	0	0	0	3952	1029	36	3	6231	3	CSMD3	8	113516042	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	278942	113516042	32847980	1220	6594										
CSMD3	114788	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	114111074	114111074	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	aatatgagtgaaattgtgtcCccaggctctgctacaatggt	10	8	1	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CSMD3-1132	NM_052900	exon5	c.G828T	p.G276G	TGTGTCCCCAGGC	.	188	59	139	1	.	0	0	0	0	0	A	114111074	C	A	114111074	2	1	31	1	0	0	0	0	0	0	0	1	3952	610	22	3		3	CSMD3	8	114111074	Silent	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	595032	114111074	32252948	1221	6595										
CSMD3	114788	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr8	114326847	114326847	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tgtccatcatataatgataaGtagtcgtattcttcttctag	6	7	4	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CSMD3-1132	NM_052900	exon2	c.C354A	p.Y118X	TGATAAGTAGTCG	.	151	61	110	0	.	0	0	0	0	0	T	114326847	G	T	114326847	4	4	31	1	0	0	0	0	0	1	0	0	3952	1024	36	3	11049	3	CSMD3	8	114326847	Nonsense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	215773	114326847	32037175	1222	6596										
CSMD3	114788	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr8	114449071	114449071	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tgctcggctttcccctttgcGgatccctttcatattattcg	7	13	1	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CSMD3-1132	NM_052900	exon1	c.C13A	p.R5S	CTTTGCGGATCCC	.	74	24	59	0	.	0	0	0	0	0	T	114449071	G	T	114449071	3	4	31	1	0	0	0	0	1	0	0	0	3952	1116	39	2	11456	2	CSMD3	8	114449071	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	122224	114449071	31914951	1223	6597										
SLC30A8	169026	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	118183272	118183272	+	Splice_Site	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ccatctcttcccttttgtcaGgtgtgccaaagagcctgaat	8	12	2	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SLC30A8-229	NM_001172811	exon9	c.683-1G>C	.	TTGTCAGGTGTGC	.	172	68	128	0	.	0	0	0	0	0	C	118183272	G	C	118183272	5	2	31	1	0	0	0	0	0	0	1	0	14596	1014	35	3	855	3	SLC30A8	8	118183272	Splice_Site	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	3734201	118183272	28180750	1224	6598										
MAL2	114569	hgsc.bcm.edu	37	chr8	120220776	120220776	+	Splice_Site	DEL	G	G	-													0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cgtgtccttcccgccgccccGgggtcaccctgcccgccggc					novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_052886	exon1	c.64+1G>-	.	CGCCCCGGGGTCA	.	25	22	0	0	.	0	0	0	0	0	-	120220776	G	-	120220776	8	5	31	1	0	1	0	1	0	0	1	0	9228	1116	39	0	67	0	MAL2	8	120220776	Splice_Site	DEL	G	TCGA-OR-A5KB-01A-11D-A30A-10	2037504	120220776	26143246	1225	6599										
MAL2	114569	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr8	120252405	120252405	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tcttttctctcctcttttagGattttgcctaccattttaca	3	11	3	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_052886	exon4	c.G304A	p.D102N	TTTTAGGATTTTG	.	24	8	18	0	.	0	0	0	0	0	A	120252405	G	A	120252405	3	1	31	1	0	0	0	0	1	0	0	0	9228	1188	41	3	315	3	MAL2	8	120252405	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	31629	120252405	26111617	1226	6600										
MAL2	114569	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr8	120252497	120252497	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ctgcatgatttgcattgcaaTacaaccataaccgggcagcc	8	12	0	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_052886	exon4	c.T396C	p.N132N	TTGCAATACAACC	.	57	13	38	0	.	0	0	0	0	0	C	120252497	T	C	120252497	2	2	31	1	0	0	0	0	0	0	0	1	9228	1403	49	4		4	MAL2	8	120252497	Silent	SNP	T	TCGA-OR-A5KB-01A-11D-A30A-10	92	120252497	26111525	1227	6601										
COL14A1	7373	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	121215990	121215990	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tgagctgcaggagatcgcctCtgaaccagacagcactcatg	11	12	2	4	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	COL14A1-543	NM_021110	exon9	c.C920A	p.S307Y	TCGCCTCTGAACC	.	179	62	123	2	.	0	0	0	0	0	A	121215990	C	A	121215990	3	1	31	1	0	0	0	0	1	0	0	0	3677	913	32	3	950	3	COL14A1	8	121215990	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	963493	121215990	25148032	1228	6602										
TMEM65	157378	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr8	125339634	125339634	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ttatccaaaaagccaaacccTatgaaaggtatcgcattgtg	7	9	0	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TMEM65-68	NM_194291	exon3	c.A378T	p.I126I	AAACCCTATGAAA	.	190	51	156	0	.	0	0	0	0	0	A	125339634	T	A	125339634	2	1	31	1	0	0	0	0	0	0	0	1	16231	1512	53	5		5	TMEM65	8	125339634	Silent	SNP	T	TCGA-OR-A5KB-01A-11D-A30A-10	4123644	125339634	21024388	1229	6603										
POU5F1B	5462	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr8	128428179	128428179	+	Frame_Shift_Del	DEL	G	G	-													0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cggtgggggtgatgggccatGgggggcggagccgggctggg					novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_001159542	exon1	c.68delG	p.W23fs	GGCCATGGGGGGC	.	61	19	46	0	.	0	0	0	0	0	-	128428179	G	-	128428179	7	5	31	1	0	1	0	1	0	0	0	0	12311	1357	47	0	70	0	POU5F1B	8	128428179	Frame_Shift_Del	DEL	G	TCGA-OR-A5KB-01A-11D-A30A-10	3088545	128428179	17935843	1230	6604	64	3								
POU5F1B	5462	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	chr8	128428183	128428183	+	Silent	SNP	G	G	T													0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gggggtgatgggccatggggGgcggagccgggctgggttga					novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_001159542	exon1	c.G72T	p.G24G	ATGGGGGGCGGAG	.	60	20	49	0	.	0	0	0	0	0	T	128428183	G	T	128428183	2	4	31	1	0	0	0	0	0	0	0	1	12311	1219	43	3		3	POU5F1B	8	128428183	Silent	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	4	128428183	17935839	1231	6605	64	3								
POU5F1B	5462	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr8	128428187	128428187	+	Missense_Mutation	SNP	G	G	C													0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gtgatgggccatggggggcgGagccgggctgggttgatcct					novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_001159542	exon1	c.G76C	p.E26Q	GGGGCGGAGCCGG	.	61	23	52	0	.	0	0	0	0	0	C	128428187	G	C	128428187	3	2	31	1	0	0	0	0	1	0	0	0	12311	1175	41	3	78	3	POU5F1B	8	128428187	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	4	128428187	17935835	1232	6606	64	3								
ADCY8	114	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr8	131964240	131964240	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ggagcacagaaagcacgagcCgctcctggaacaaatgaaga	12	10	0	3	rs138524416	alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ADCY8-157	NM_001115	exon3	c.G1115T	p.R372L	ACGAGCCGCTCCT	.	216	59	150	0	C|1.000;T|0.000	0	0	0	0	0	A	131964240	C	A	131964240	3	1	31	1	0	0	0	0	1	0	0	0	300	652	23	2	2704	2	ADCY8	8	131964240	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	3536053	131964240	14399782	1233	6607										
KCNQ3	3786	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr8	133187720	133187720	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	caggccccaccacagggcatCtgcataggtctcaaactcct	8	16	2	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	KCNQ3-138	NM_004519	exon5	c.G913T	p.D305Y	GGGCATCTGCATA	.	227	108	166	0	.	0	0	0	0	0	A	133187720	C	A	133187720	3	1	31	1	0	0	0	0	1	0	0	0	8105	913	32	3	1749	3	KCNQ3	8	133187720	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	1223480	133187720	13176302	1234	6608										
SLA	6503	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	134050829	134050829	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tttctcttgctgccaccataCatcagggagatgcttttctt	7	11	3	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SLA-279	NM_006748	exon7	c.G891T	p.M297I	ACCATACATCAGG	.	244	72	196	2	.	0	0	0	0	0	A	134050829	C	A	134050829	3	1	31	1	0	0	0	0	1	0	0	0	14398	478	17	3	63	3	SLA	8	134050829	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	863109	134050829	12313193	1235	6609										
SLA	6503	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr8	134072520	134072520	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ggagaatgacccagtttagaGagcatcgtgcatcatttttc	10	8	1	3	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SLA-279	NM_006748	exon1	c.C6G	p.L2L	TTTAGAGAGCATC	.	173	54	124	0	.	0	0	0	0	0	C	134072520	G	C	134072520	2	2	31	1	0	0	0	0	0	0	0	1	14398	929	33	3		3	SLA	8	134072520	Silent	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	21691	134072520	12291502	1236	6610										
TG	7038	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr8	134145773	134145773	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cacatttgcaaccccctggcCtgactttgtaccccgtgctg	8	16	0	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TG-145	NM_003235	exon47	c.C8057A	p.P2686H	CCTGGCCTGACTT	.	169	73	163	0	.	0	0	0	0	0	A	134145773	C	A	134145773	3	1	31	1	0	0	0	0	1	0	0	0	15850	681	24	3	8243	3	TG	8	134145773	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	73253	134145773	12218249	1237	6611										
FAM135B	51059	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr8	139158277	139158277	+	Silent	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	atgaaagtctttaccagccgGaggtctgcactgttccctaa	9	11	2	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FAM135B-31	NM_015912	exon15	c.C3465A	p.L1155L	CAGCCGGAGGTCT	.	67	25	39	0	.	0	0	0	0	0	T	139158277	G	T	139158277	2	4	31	1	0	0	0	0	0	0	0	1	5465	1161	41	3		3	FAM135B	8	139158277	Silent	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	5012504	139158277	7205745	1238	6612										
FAM135B	51059	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr8	139165292	139165292	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tggctctggacaccttataaCttcttcatcagaatccattt	5	11	4	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FAM135B-31	NM_015912	exon13	c.G1426T	p.V476F	TTATAACTTCTTC	.	163	33	138	0	.	0	0	0	0	0	A	139165292	C	A	139165292	3	1	31	1	0	0	0	0	1	0	0	0	5465	565	20	3	2826	3	FAM135B	8	139165292	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	7015	139165292	7198730	1239	6613										
FAM135B	51059	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr8	139190892	139190892	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gacgtgagccaggccagatcCttgcttatctgctcagcgat	11	12	2	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FAM135B-31	NM_015912	exon10	c.G915T	p.K305N	CAGATCCTTGCTT	.	235	58	204	0	.	0	0	0	0	0	A	139190892	C	A	139190892	3	1	31	1	0	0	0	0	1	0	0	0	5465	680	24	3	3349	3	FAM135B	8	139190892	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	25600	139190892	7173130	1240	6614										
COL22A1	169044	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr8	139712358	139712358	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gcaccgctactacttacgggCatccgtggatgtggtgtgaa	13	10	0	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	COL22A1-103	NM_152888	exon32	c.G2589T	p.M863I	TACGGGCATCCGT	.	136	47	103	0	.	0	0	0	0	0	A	139712358	C	A	139712358	3	1	31	1	0	0	0	0	1	0	0	0	3687	710	25	3	2427	3	COL22A1	8	139712358	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	521466	139712358	6651664	1241	6615										
COL22A1	169044	hgsc.bcm.edu	37	chr8	139890282	139890282	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gagaagctgcgggccgtgatGtagcggagcgcgtctcccgt	17	11	1	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	COL22A1-103	NM_152888	exon3	c.C369T	p.Y123Y	CGTGATGTAGCGG	.	130	15	5	0	.	0	0	0	0	0	A	139890282	G	A	139890282	2	1	31	1	0	0	0	0	0	0	0	1	3687	1372	48	3		3	COL22A1	8	139890282	Silent	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	177924	139890282	6473740	1242	6616										
ARC	23237	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr8	143694448	143694448	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ctccgggatgccctctactcGggctgggtccggtcactggc	14	15	2	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ARC-135	NM_015193	exon1	c.C1185A	p.P395P	CTACTCGGGCTGG	.	143	44	47	0	.	0	0	0	0	0	T	143694448	G	T	143694448	2	4	31	1	0	0	0	0	0	0	0	1	841	1103	39	2		2	ARC	8	143694448	Silent	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	3804166	143694448	2669574	1243	6617										
ARC	23237	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	143694832	143694832	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tactgcaggaactccttcttGaactccacccagttcttcac	5	15	3	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ARC-135	NM_015193	exon1	c.C801G	p.F267L	CTTCTTGAACTCC	.	169	87	126	1	.	0	0	0	0	0	C	143694832	G	C	143694832	3	2	31	1	0	0	0	0	1	0	0	0	841	1281	45	3	393	3	ARC	8	143694832	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	384	143694832	2669190	1244	6618										
ZNF696	79943	hgsc.bcm.edu	37	chr8	144378868	144378868	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ggcttcttccggcaccagcgActccacacgggcgagaagcc	12	16	1	1	rs7386259	byfrequency	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ZNF696-90	NM_030895	exon3	c.A1023G	p.R341R	CCAGCGACTCCAC	.	10	8	0	0	A|0.118;G|0.882	0	0	0	0	0	G	144378868	A	G	144378868	2	3	31	1	0	0	0	0	0	0	0	1	18136	262	10	4		4	ZNF696	8	144378868	Silent	SNP	A	TCGA-OR-A5KB-01A-11D-A30A-10	684036	144378868	1985154	1245	6619										
TIGD5	84948	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr8	144681841	144681841	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cctcagtgccgactgccgggGaggccgtgcgggggctagaa	18	12	1	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TIGD5-90	NM_032862	exon1	c.G1768T	p.E590X	GCCGGGGAGGCCG	.	166	66	70	0	.	0	0	0	0	0	T	144681841	G	T	144681841	4	4	31	1	0	0	0	0	0	1	0	0	15936	1175	41	3	1770	3	TIGD5	8	144681841	Nonsense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	302973	144681841	1682181	1246	6620										
FAM83H	286077	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	144811162	144811162	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gctcccactcatcaccacggCacagtccaccagcaggaact	7	18	2	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FAM83H-92	NM_198488	exon4	c.G712C	p.A238P	CCACGGCACAGTC	.	224	95	177	2	.	0	0	0	0	0	G	144811162	C	G	144811162	3	3	31	1	0	0	0	0	1	0	0	0	5659	710	25	3	2835	3	FAM83H	8	144811162	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	129321	144811162	1552860	1247	6621										
EPPK1	83481	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr8	144940543	144940543	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	agcttctcctggatctcgccGcccaccacgcccgcggccac	9	21	2	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	EPPK1-25	NM_031308	exon1	c.C6879T	p.G2293G	CTCGCCGCCCACC	.	256	25	27	0	.	0	0	0	0	0	A	144940543	G	A	144940543	2	1	31	1	0	0	0	0	0	0	0	1	5203	1074	38	1		1	EPPK1	8	144940543	Silent	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	129381	144940543	1423479	1248	6622										
EPPK1	83481	hgsc.bcm.edu	37	chr8	144940615	144940615	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	acggggtcgatgacgaagccGgtggccgcctgcgcctccag	16	14	0	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	EPPK1-25	NM_031308	exon1	c.C6807T	p.T2269T	GAAGCCGGTGGCC	.	94	12	1	0	.	0	0	0	0	0	A	144940615	G	A	144940615	2	1	31	1	0	0	0	0	0	0	0	1	5203	1103	39	1		1	EPPK1	8	144940615	Silent	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	72	144940615	1423407	1249	6623										
EPPK1	83481	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr8	144941957	144941957	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ccagcaatttctccaggcccCcactctgggctccatactcc	6	19	2	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	EPPK1-25	NM_031308	exon1	c.G5465T	p.G1822V	AGGCCCCCACTCT	.	160	57	110	0	.	0	0	0	0	0	A	144941957	C	A	144941957	3	1	31	1	0	0	0	0	1	0	0	0	5203	623	22	3	1801	3	EPPK1	8	144941957	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	1342	144941957	1422065	1250	6624										
PLEC	5339	broad.mit.edu;bcgsc.ca	37	chr8	144991067	144991067	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cgcctccagcagccgctgccCcgtgatgttatccaccaggt	10	17	0	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PLEC-141	NM_201380	exon32	c.G13333C	p.G4445R	GCTGCCCCGTGAT	.	208	101	51	1	.	0	0	0	0	0	G	144991067	C	G	144991067	3	3	31	1	0	0	0	0	1	0	0	0	12081	623	22	3	725	3	PLEC	8	144991067	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	49110	144991067	1372955	1251	6625										
PLEC	5339	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	144991254	144991254	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gatcccaccgaggaggaacgGgagcggaaaccaccggcgtt	15	12	0	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PLEC-141	NM_201380	exon32	c.C13146T	p.S4382S	GGAACGGGAGCGG	.	346	125	207	1	.	0	0	0	0	0	A	144991254	G	A	144991254	2	1	31	1	0	0	0	0	0	0	0	1	12081	1219	43	3		3	PLEC	8	144991254	Silent	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	187	144991254	1372768	1252	6626										
PLEC	5339	hgsc.bcm.edu	37	chr8	144998169	144998169	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cgccgccgctcctcctccgcCgccagctgccgctgcctcgc	10	24	0	0	rs1140522	byfrequency	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PLEC-141	NM_201380	exon31	c.G6339A	p.A2113A	CTCCGCCGCCAGC	.	14	14	0	0	C|0.740;T|0.260	0	0	0	0	0	T	144998169	C	T	144998169	2	4	31	1	0	0	0	0	0	0	0	1	12081	639	23	1		1	PLEC	8	144998169	Silent	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	6915	144998169	1365853	1253	6627										
PLEC	5339	hgsc.bcm.edu	37	chr8	144998190	144998190	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gccagctgccgctgcctcgcAgcctccagctcggcctgctc	11	20	0	0	rs2857829	byfrequency	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PLEC-141	NM_201380	exon31	c.T6318C	p.A2106A	CCTCGCAGCCTCC	.	36	36	0	0	A|0.738;G|0.262	0	0	0	0	0	G	144998190	A	G	144998190	2	3	31	1	0	0	0	0	0	0	0	1	12081	175	7	4		4	PLEC	8	144998190	Silent	SNP	A	TCGA-OR-A5KB-01A-11D-A30A-10	21	144998190	1365832	1254	6628										
PLEC	5339	hgsc.bcm.edu	37	chr8	144999417	144999417	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	agggccacctgtacctgccgCgctcgctccacctcggcctg	11	19	0	0	rs55836855	byfrequency	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PLEC-141	NM_201380	exon31	c.G5091A	p.A1697A	CTGCCGCGCTCGC	.	19	19	1	0	C|0.731;T|0.269	0	0	0	0	0	T	144999417	C	T	144999417	2	4	31	1	0	0	0	0	0	0	0	1	12081	755	27	1		1	PLEC	8	144999417	Silent	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	1227	144999417	1364605	1255	6629										
PLEC	5339	hgsc.bcm.edu	37	chr8	145001784	145001784	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	agcctgccagcgctcaagcaActgggcgacccgctcccgcc	11	19	1	0	rs3135109	byfrequency	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PLEC-141	NM_201380	exon27	c.T3961C	p.L1321L	CAAGCAACTGGGC	.	39	39	0	0	G|0.246;A|0.754	0	0	0	0	0	G	145001784	A	G	145001784	2	3	31	1	0	0	0	0	0	0	0	1	12081	40	2	4		4	PLEC	8	145001784	Silent	SNP	A	TCGA-OR-A5KB-01A-11D-A30A-10	2367	145001784	1362238	1256	6630										
GPAA1	8733	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	145140943	145140943	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gggtgtgctggagcaccacaCctacggcgccctgctcttcc	12	16	1	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GPAA1-90	NM_003801	exon12	c.C1781A	p.T594N	ACCACACCTACGG	.	98	12	66	0	.	0	0	0	0	0	A	145140943	C	A	145140943	3	1	31	1	0	0	0	0	1	0	0	0	6607	507	18	3	1827	3	GPAA1	8	145140943	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	139159	145140943	1223079	1257	6631										
CYHR1	50626	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	145678757	145678757	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ctgatctcacaacgacaattGgggcacgtggcctgctcctc	10	14	1	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CYHR1-90	NM_138496	exon3	c.C333T	p.P111P	ACAATTGGGGCAC	.	264	113	189	2	.	0	0	0	0	0	A	145678757	G	A	145678757	2	1	31	1	0	0	0	0	0	0	0	1	4146	1335	47	3		3	CYHR1	8	145678757	Silent	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	537814	145678757	685265	1258	6632										
ZNF517	340385	hgsc.bcm.edu	37	chr8	146033347	146033347	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gggtgcccaggacggcggcgTggggcagggcgccctgctcg	21	13	0	0	rs2976653		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ZNF517-90	NM_213605	exon5	c.T1046C	p.V349A	GCGGCGTGGGGCA	.	21	21	0	0	G|0.992;C|0.006	0	0	0	0	0	C	146033347	T	C	146033347	3	2	31	1	0	0	0	0	1	0	0	0	17998	1696	59	4	1060	4	ZNF517	8	146033347	Missense_Mutation	SNP	T	TCGA-OR-A5KB-01A-11D-A30A-10	354590	146033347	330675	1259	6633										
KANK1	23189	ucsc.edu;bcgsc.ca	37	chr9	712593	712593	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ggcagcaacacagaggagtcTgtgaacgacctcacactcct	10	13	2	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	KANK1-517	NM_001256876	exon7	c.T1827A	p.S609S	GGAGTCTGTGAAC	.	181	106	234	3	.	0	0	0	0	0	A	712593	T	A	712593	2	1	31	1	0	0	0	0	0	0	0	1	7997	1567	55	5		5	KANK1	9	712593	Silent	SNP	T	TCGA-OR-A5KB-01A-11D-A30A-10		712593	140500838	1260	6634										
DMRT3	58524	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr9	990798	990798	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cagcagcagtatcagctgagGtcccagtatgtcagtccttt	10	11	2	1	rs148970201	alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DMRT3-516	NM_021240	exon2	c.G1212T	p.R404S	GCTGAGGTCCCAG	.	98	55	130	0	G|0.999;A|0.000	0	0	0	0	0	T	990798	G	T	990798	3	4	31	1	0	0	0	0	1	0	0	0	4598	1252	44	3	1218	3	DMRT3	9	990798	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	278205	990798	140222633	1261	6635										
PTPRD	5789	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr9	8518129	8518129	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ttcgtgcctggacatccctcGgggcactggatggtgcttgc	14	12	0	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PTPRD-912	NM_130392	exon10	c.C1262A	p.P421Q	TCCCTCGGGGCAC	.	138	64	224	0	.	0	0	0	0	0	T	8518129	G	T	8518129	3	4	31	1	0	0	0	0	1	0	0	0	12834	1116	39	2	4648	2	PTPRD	9	8518129	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	7527331	8518129	132695302	1262	6636										
PTPRD	5789	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr9	8636699	8636699	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cagaacaatggacctaatacCtcaaatctctgattgctgac	6	11	2	3	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PTPRD-912	NM_001040712	exon2	c.G210T	p.E70D	TAATACCTCAAAT	.	138	88	213	0	.	0	0	0	0	0	A	8636699	C	A	8636699	3	1	31	1	0	0	0	0	1	0	0	0	12834	695	24	3	5732	3	PTPRD	9	8636699	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	118570	8636699	132576732	1263	6637										
FREM1	158326	bcgsc.ca	37	chr9	14842322	14842322	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cccagaacttacctatcagtCctggccctggcttcttcatg	7	15	3	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FREM1-138	NM_144966	exon10	c.G1730C	p.G577A	ATCAGTCCTGGCC	.	61	27	102	3	.	0	0	0	0	0	G	14842322	C	G	14842322	3	3	31	1	0	0	0	0	1	0	0	0	6063	855	30	3	4975	3	FREM1	9	14842322	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	6205623	14842322	126371109	1264	6638										
HAUS6	54801	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr9	19063554	19063554	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tttctatctgatgatgaaacTgactgcgacaagaaagaggc	10	7	2	6	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	HAUS6-92	NM_017645	exon13	c.A1401G	p.S467S	TGAAACTGACTGC	.	139	77	234	0	.	0	0	0	0	0	C	19063554	T	C	19063554	2	2	31	1	0	0	0	0	0	0	0	1	6991	1567	55	4		4	HAUS6	9	19063554	Silent	SNP	T	TCGA-OR-A5KB-01A-11D-A30A-10	4221232	19063554	122149877	1265	6639										
LINGO2	158038	ucsc.edu;bcgsc.ca	37	chr9	27949236	27949236	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gcgatgcaaacatacatcccGctgtcttgatcctgggcaaa	9	12	1	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	LINGO2-516	NM_001258282	exon7	c.C1434A	p.S478R	CATCCCGCTGTCT	.	62	34	108	2	.	0	0	0	0	0	T	27949236	G	T	27949236	3	4	31	1	0	0	0	0	1	0	0	0	8839	1078	38	2	390	2	LINGO2	9	27949236	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	8885682	27949236	113264195	1266	6640										
TMEM8B	51754	bcgsc.ca	37	chr9	35842566	35842566	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	agtgcgcccgactctgcgcaAcgagctggacaccttctctg	11	15	2	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TMEM8B-91	NM_001042590	exon6	c.A131T	p.N44I	TGCGCAACGAGCT	.	110	61	145	3	.	0	0	0	0	0	T	35842566	A	T	35842566	3	4	31	1	0	0	0	0	1	0	0	0	16252	43	2	5	133	5	TMEM8B	9	35842566	Missense_Mutation	SNP	A	TCGA-OR-A5KB-01A-11D-A30A-10	7893330	35842566	105370865	1267	6641										
CCIN	881	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr9	36170829	36170829	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gttatatctcccgggtcgggGtagtggactgctttgacacc	13	10	1	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CCIN-92	NM_005893	exon1	c.G1330T	p.V444L	GTCGGGGTAGTGG	.	156	86	198	0	.	0	0	0	0	0	T	36170829	G	T	36170829	3	4	31	1	0	0	0	0	1	0	0	0	2884	1261	44	3	1332	3	CCIN	9	36170829	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	328263	36170829	105042602	1268	6642										
KLF9	687	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr9	73027994	73027994	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ttcggtggtcacgtcgctgtCggatcccatatcctcatctg	10	13	3	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	KLF9-90	NM_001206	exon1	c.G286C	p.D96H	CGCTGTCGGATCC	.	230	39	205	0	.	0	0	0	0	0	G	73027994	C	G	73027994	3	3	31	1	0	0	0	0	1	0	0	0	8374	884	31	2	456	2	KLF9	9	73027994	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	36857165	73027994	68185437	1269	6643										
TMEM2	23670	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr9	74349872	74349872	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tagcaaatttagcttcactcCatctacaacctctacccgga	4	14	3	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TMEM2-92	NM_013390	exon6	c.G1243T	p.G415X	TCACTCCATCTAC	.	76	20	55	0	.	0	0	0	0	0	A	74349872	C	A	74349872	4	1	31	1	0	0	0	0	0	1	0	0	16158	603	21	3	2984	3	TMEM2	9	74349872	Nonsense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	1321878	74349872	66863559	1270	6644										
GDA	9615	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr9	74810477	74810477	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	caaagaatggtgcttcaagcCgtgtgaaataagagaactga	11	6	1	4	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GDA-230	NM_004293	exon2	c.C185A	p.P62Q	TCAAGCCGTGTGA	.	48	14	35	0	.	0	0	0	0	0	A	74810477	C	A	74810477	3	1	31	1	0	0	0	0	1	0	0	0	6326	652	23	2	191	2	GDA	9	74810477	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	460605	74810477	66402954	1271	6645										
RORB	6096	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr9	77249546	77249546	+	Splice_Site	DEL	G	G	-													0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cccttctctttttccctcaaGggattctttaggaggagcca					novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	RORB-229	NM_006914	exon3	c.94-1G>-	.	CCTCAAGGGATTC	.	45	15	45	0	.	0	0	0	0	0	-	77249546	G	-	77249546	8	5	31	1	0	1	0	1	0	0	1	0	13564	1014	35	0	103	0	RORB	9	77249546	Splice_Site	DEL	G	TCGA-OR-A5KB-01A-11D-A30A-10	2439069	77249546	63963885	1272	6646										
TRPM6	140803	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr9	77423024	77423024	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gttgctgcgatatgctctacCaatgaggtattctactacta	8	9	2	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TRPM6-335	NM_017662	exon14	c.G1564T	p.G522C	CTCTACCAATGAG	.	155	46	139	0	.	0	0	0	0	0	A	77423024	C	A	77423024	3	1	31	1	0	0	0	0	1	0	0	0	16628	594	21	3	4608	3	TRPM6	9	77423024	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	173478	77423024	63790407	1273	6647										
TRPM6	140803	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr9	77431651	77431651	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	accctgtcccaagccattgcCagatttaattgctctgacgc	7	14	1	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TRPM6-335	NM_017662	exon11	c.G1242T	p.L414L	CATTGCCAGATTT	.	50	14	45	0	.	0	0	0	0	0	A	77431651	C	A	77431651	2	1	31	1	0	0	0	0	0	0	0	1	16628	581	21	3		3	TRPM6	9	77431651	Silent	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	8627	77431651	63781780	1274	6648										
PRUNE2	158471	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr9	79320603	79320603	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	aacctgtactgttgtcaccgTttatttcagaaggttcaggt	9	8	3	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PRUNE2-157	NM_015225	exon8	c.A6587T	p.N2196I	TCACCGTTTATTT	.	155	56	141	0	.	0	0	0	0	0	A	79320603	T	A	79320603	3	1	31	1	0	0	0	0	1	0	0	0	12673	1725	60	5	2727	5	PRUNE2	9	79320603	Missense_Mutation	SNP	T	TCGA-OR-A5KB-01A-11D-A30A-10	1888952	79320603	61892828	1275	6649										
TLE4	7091	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr9	82321726	82321726	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gaatggcctagacaagacacGcctgctcaagaaagatgccc	10	12	1	4	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TLE4-524	NM_007005	exon11	c.G848T	p.R283L	AGACACGCCTGCT	.	90	30	108	0	.	0	0	0	0	0	T	82321726	G	T	82321726	3	4	31	1	0	0	0	0	1	0	0	0	15978	1087	38	2	890	2	TLE4	9	82321726	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	3001123	82321726	58891705	1276	6650										
AGTPBP1	23287	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr9	88162051	88162051	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	aggtatgttcttgataattcAgagtcagaaagtacttcttc	8	6	4	3	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	AGTPBP1-158	NM_015239	exon26	c.T3534A	p.S1178S	TAATTCAGAGTCA	.	130	45	141	0	.	0	0	0	0	0	T	88162051	A	T	88162051	2	4	31	1	0	0	0	0	0	0	0	1	400	175	7	5		5	AGTPBP1	9	88162051	Silent	SNP	A	TCGA-OR-A5KB-01A-11D-A30A-10	5840325	88162051	53051380	1277	6651										
DAPK1	1612	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr9	90318057	90318057	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cagcagtttgtgtacgacgtGcaggaccagctgaaccccct	11	13	0	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DAPK1-359	NM_004938	exon25	c.G2985T	p.V995V	CGACGTGCAGGAC	.	192	69	171	0	.	0	0	0	0	0	T	90318057	G	T	90318057	2	4	31	1	0	0	0	0	0	0	0	1	4241	1306	46	3		3	DAPK1	9	90318057	Silent	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	2156006	90318057	50895374	1278	6652										
SYK	6850	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr9	93637019	93637019	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gcccctacgcggaccccgagGagatcaggcccaaggaggtt	14	14	1	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SYK-1402	NM_003177	exon9	c.G1069C	p.E357Q	CCCGAGGAGATCA	.	108	52	128	0	.	0	0	0	0	0	C	93637019	G	C	93637019	3	2	31	1	0	0	0	0	1	0	0	0	15475	1175	41	3	1099	3	SYK	9	93637019	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	3318962	93637019	47576412	1279	6653										
NOL8	55035	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	95076909	95076909	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gaaataggattcttacttctCttttcagaactgctagggga	9	7	3	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	NOL8-23	NM_017948	exon7	c.G1998C	p.K666N	ACTTCTCTTTTCA	.	166	47	142	2	.	0	0	0	0	0	G	95076909	C	G	95076909	3	3	31	1	0	0	0	0	1	0	0	0	10556	912	32	3	1549	3	NOL8	9	95076909	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	1439890	95076909	46136522	1280	6654										
NOL8	55035	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr9	95077071	95077071	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tatggggacccatcttccatGgatatgatactgggatcctc	10	10	1	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	NOL8-23	NM_017948	exon7	c.C1836T	p.S612S	TTCCATGGATATG	.	52	25	59	0	.	0	0	0	0	0	A	95077071	G	A	95077071	2	1	31	1	0	0	0	0	0	0	0	1	10556	1335	47	3		3	NOL8	9	95077071	Silent	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	162	95077071	46136360	1281	6655										
ECM2	1842	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	95263198	95263198	+	Missense_Mutation	SNP	G	G	T													0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ggtacaagtattccaggcctGgttccatgtggccaaacaca					novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ECM2-131	NM_001393	exon9	c.C1742A	p.P581Q	AGGCCTGGTTCCA	.	215	58	231	0	.	0	0	0	0	0	T	95263198	G	T	95263198	3	4	31	1	0	0	0	0	1	0	0	0	4909	1348	47	3	365	3	ECM2	9	95263198	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	186127	95263198	45950233	1282	6656	65	2								
ECM2	1842	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	95263199	95263199	+	Missense_Mutation	SNP	G	G	T													0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gtacaagtattccaggcctgGttccatgtggccaaacacat					novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ECM2-131	NM_001393	exon9	c.C1741A	p.P581T	GGCCTGGTTCCAT	.	219	60	227	1	.	0	0	0	0	0	T	95263199	G	T	95263199	3	4	31	1	0	0	0	0	1	0	0	0	4909	1261	44	3	366	3	ECM2	9	95263199	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	1	95263199	45950232	1283	6657	65	2								
FAM22G	441457	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr9	99694487	99694487	+	Frame_Shift_Del	DEL	C	C	-													0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	accaccggctgcccaggtggCccccatcgtgtccccaggga					novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FAM22G-69	NM_001045477	exon2	c.500delC	p.A167fs	AGGTGGCCCCCAT	.	713	165	392	0	.	0	0	0	0	0	-	99694487	C	-	99694487	7	5	31	1	0	1	0	1	0	0	0	0	5562	739	26	0	506	0	FAM22G	9	99694487	Frame_Shift_Del	DEL	C	TCGA-OR-A5KB-01A-11D-A30A-10	4431288	99694487	41518944	1284	6658										
HEMGN	55363	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	100693484	100693484	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tccttttcctgttctctgctGcttgcgttttttctgttctc	6	12	3	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	HEMGN-91	NM_197978	exon3	c.C193A	p.Q65K	TCTGCTGCTTGCG	.	27	6	18	0	.	0	0	0	0	0	T	100693484	G	T	100693484	3	4	31	1	0	0	0	0	1	0	0	0	7071	1328	46	3	1269	3	HEMGN	9	100693484	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	998997	100693484	40519947	1285	6659										
COL15A1	1306	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr9	101749611	101749611	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ctcaccgtgcaccccgacccCaggactcccgaggagctgtg	11	18	1	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	COL15A1-96	NM_001855	exon4	c.C684A	p.P228P	CGACCCCAGGACT	.	80	30	62	0	.	0	0	0	0	0	A	101749611	C	A	101749611	2	1	31	1	0	0	0	0	0	0	0	1	3678	581	21	3		3	COL15A1	9	101749611	Silent	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	1056127	101749611	39463820	1286	6660										
COL15A1	1306	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	101765834	101765834	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ccgggggaccaaccctctctAtgtccacggagaacccagag	11	15	1	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	COL15A1-96	NM_001855	exon8	c.A1165G	p.M389V	CTCTCTATGTCCA	.	266	91	260	1	.	0	0	0	0	0	G	101765834	A	G	101765834	3	3	31	1	0	0	0	0	1	0	0	0	3678	449	16	4	1195	4	COL15A1	9	101765834	Missense_Mutation	SNP	A	TCGA-OR-A5KB-01A-11D-A30A-10	16223	101765834	39447597	1287	6661										
GRIN3A	116443	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	104390541	104390541	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	aagaggttgacactcacttcAgatactccactccatcaggg	8	12	3	3	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GRIN3A-96	NM_133445	exon4	c.T2495A	p.L832Q	CACTTCAGATACT	.	42	4	39	0	.	0	0	0	0	0	T	104390541	A	T	104390541	3	4	31	1	0	0	0	0	1	0	0	0	6804	188	7	5	876	5	GRIN3A	9	104390541	Missense_Mutation	SNP	A	TCGA-OR-A5KB-01A-11D-A30A-10	2624707	104390541	36822890	1288	6662										
GRIN3A	116443	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr9	104432880	104432880	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gcccatttttccatgctccaTactttccatcccctacaata	2	16	0	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GRIN3A-96	NM_133445	exon3	c.A1814T	p.Y605F	GCTCCATACTTTC	.	108	33	138	0	.	0	0	0	0	0	A	104432880	T	A	104432880	3	1	31	1	0	0	0	0	1	0	0	0	6804	1406	49	5	1561	5	GRIN3A	9	104432880	Missense_Mutation	SNP	T	TCGA-OR-A5KB-01A-11D-A30A-10	42339	104432880	36780551	1289	6663										
GRIN3A	116443	broad.mit.edu;mdanderson.org	37	chr9	104499917	104499917	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	agggcctccgccctggcgccCtccccgggcttacgggagcc	14	19	0	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GRIN3A-96	NM_133445	exon1	c.G345T	p.E115D	GGCGCCCTCCCCG	.	47	15	29	0	.	0	0	0	0	0	A	104499917	C	A	104499917	3	1	31	1	0	0	0	0	1	0	0	0	6804	680	24	3	3038	3	GRIN3A	9	104499917	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	67037	104499917	36713514	1290	6664										
OR13C8	138802	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr9	107331611	107331611	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ttatcatctttgattctcacCtgcacacccccatgtatttc	3	14	3	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OR13C8-70	NM_001004483	exon1	c.C163A	p.L55M	TCTCACCTGCACA	.	96	30	97	0	.	0	0	0	0	0	A	107331611	C	A	107331611	3	1	31	1	0	0	0	0	1	0	0	0	10967	680	24	3	165	3	OR13C8	9	107331611	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	2831694	107331611	33881820	1291	6665										
ZNF462	58499	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	109746465	109746465	+	Splice_Site	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tccattcaatttgtttccacAgaagagcgtgttgtccccat	7	11	1	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ZNF462-95	NM_021224	exon10	c.6833-2A>T	.	TTCCACAGAAGAG	.	99	33	71	1	.	0	0	0	0	0	T	109746465	A	T	109746465	5	4	31	1	0	0	0	0	0	0	1	0	17963	202	7	5	6865	5	ZNF462	9	109746465	Splice_Site	SNP	A	TCGA-OR-A5KB-01A-11D-A30A-10	2414854	109746465	31466966	1292	6666										
SVEP1	79987	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr9	113169869	113169869	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	atacagaaagtttgatgaatGtgtagcaggagactcctttg	11	5	0	4	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SVEP1-75	NM_153366	exon38	c.C8011A	p.H2671N	ATGAATGTGTAGC	.	116	35	96	0	.	0	0	0	0	0	T	113169869	G	T	113169869	3	4	31	1	0	0	0	0	1	0	0	0	15457	1377	48	3	2748	3	SVEP1	9	113169869	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	3423404	113169869	28043562	1293	6667										
SVEP1	79987	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr9	113265477	113265477	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gtggccatgtttcggctggcGgagatgaggacatgttctta	15	7	1	2	rs200840190	alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SVEP1-75	NM_153366	exon6	c.C1324A	p.R442S	GCTGGCGGAGATG	.	251	85	209	0	G|0.999;A|0.001	0	0	0	0	0	T	113265477	G	T	113265477	3	4	31	1	0	0	0	0	1	0	0	0	15457	1116	39	2	9563	2	SVEP1	9	113265477	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	95608	113265477	27947954	1294	6668										
MUSK	4593	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr9	113547978	113547978	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gacatcggagagggagcgttTggaagggtgtttcaagcaag	17	5	1	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MUSK-1379	NM_005592	exon12	c.T1758A	p.F586L	AGCGTTTGGAAGG	.	141	68	110	0	.	0	0	0	0	0	A	113547978	T	A	113547978	3	1	31	1	0	0	0	0	1	0	0	0	10017	1809	63	5	1840	5	MUSK	9	113547978	Missense_Mutation	SNP	T	TCGA-OR-A5KB-01A-11D-A30A-10	282501	113547978	27665453	1295	6669										
FKBP15	23307	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr9	115969505	115969505	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gacttactatcgatatgcatGgactgctgttgcgaccagta	10	9	0	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FKBP15-25	NM_015258	exon3	c.C241T	p.H81Y	ATGCATGGACTGC	.	191	83	136	0	.	0	0	0	0	0	A	115969505	G	A	115969505	3	1	31	1	0	0	0	0	1	0	0	0	5924	1348	47	3	3522	3	FKBP15	9	115969505	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	2421527	115969505	25243926	1296	6670										
ALAD	210	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	116151361	116151361	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	caaactctccagagacgtggTacacggcgagagggaggtca	14	10	2	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ALAD-90	NM_000031	exon11	c.A827T	p.Y276F	ACGTGGTACACGG	.	257	102	231	2	.	0	0	0	0	0	A	116151361	T	A	116151361	3	1	31	1	0	0	0	0	1	0	0	0	483	1638	57	5	173	5	ALAD	9	116151361	Missense_Mutation	SNP	T	TCGA-OR-A5KB-01A-11D-A30A-10	181856	116151361	25062070	1297	6671										
C9orf43	257169	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr9	116176080	116176080	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tggtagacatcttagattccGgctttgcagctcatcattta	8	9	3	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	C9orf43-90	NM_152786	exon3	c.G193A	p.G65S	GATTCCGGCTTTG	.	95	33	113	2	.	0	0	0	0	0	A	116176080	G	A	116176080	3	1	31	1	0	0	0	0	1	0	0	0	2489	1116	39	1	199	1	C9orf43	9	116176080	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	24719	116176080	25037351	1298	6672										
COL27A1	85301	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	117070019	117070019	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gtctcctgcaacttcactcaTggtggacagacgtgtctcaa	9	12	4	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	COL27A1-94	NM_032888	exon59	c.T5178C	p.H1726H	CACTCATGGTGGA	.	259	85	191	1	.	0	0	0	0	0	C	117070019	T	C	117070019	2	2	31	1	0	0	0	0	0	0	0	1	3691	1461	51	4		4	COL27A1	9	117070019	Silent	SNP	T	TCGA-OR-A5KB-01A-11D-A30A-10	893939	117070019	24143412	1299	6673										
AKNA	80709	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr9	117143414	117143414	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gtgggtcccactccaggggcGgcaggtgctgctgggccagg	19	12	0	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	AKNA-94	NM_030767	exon2	c.C200T	p.P67L	AGGGGCGGCAGGT	.	114	51	64	0	.	0	0	0	0	0	A	117143414	G	A	117143414	3	1	31	1	0	0	0	0	1	0	0	0	463	1116	39	1	4203	1	AKNA	9	117143414	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	73395	117143414	24070017	1300	6674										
PAPPA	5069	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	118949703	118949703	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	acaagtgggtggcatattcaGcccactgacccagaagtgca	11	11	1	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PAPPA-77	NM_002581	exon2	c.G686C	p.S229T	TATTCAGCCCACT	.	93	12	86	0	.	0	0	0	0	0	C	118949703	G	C	118949703	3	2	31	1	0	0	0	0	1	0	0	0	11461	971	34	3	692	3	PAPPA	9	118949703	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	1806289	118949703	22263728	1301	6675										
PAPPA	5069	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	118997834	118997834	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tctgtctacagtgtaagcccCtgaagtataaggtggtccgg	12	9	2	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PAPPA-77	NM_002581	exon7	c.C2650G	p.L884V	AAGCCCCTGAAGT	.	142	43	137	1	.	0	0	0	0	0	G	118997834	C	G	118997834	3	3	31	1	0	0	0	0	1	0	0	0	11461	680	24	3	2676	3	PAPPA	9	118997834	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	48131	118997834	22215597	1302	6676										
PAPPA	5069	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr9	119097159	119097159	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ggcctccatgtcctgagctgCaggaacaatcccctgattat	9	13	0	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PAPPA-77	NM_002581	exon13	c.C3417A	p.C1139X	GAGCTGCAGGAAC	.	129	27	106	0	.	0	0	0	0	0	A	119097159	C	A	119097159	4	1	31	1	0	0	0	0	0	1	0	0	11461	718	25	3	3467	3	PAPPA	9	119097159	Nonsense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	99325	119097159	22116272	1303	6677										
ASTN2	23245	ucsc.edu;bcgsc.ca	37	chr9	120053671	120053671	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gagggctcctggagagtgggGgcggtggcttgggccagctg	22	8	0	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ASTN2-161	NM_014010	exon2	c.C564G	p.A188A	AGTGGGGGCGGTG	.	259	94	224	3	.	0	0	0	0	0	C	120053671	G	C	120053671	2	2	31	1	0	0	0	0	0	0	0	1	1066	1219	43	3		3	ASTN2	9	120053671	Silent	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	956512	120053671	21159760	1304	6678										
TLR4	7099	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr9	120475502	120475502	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cttccaacaaaggtgggaatGctttttcagaagttgatcta	9	7	2	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TLR4-577	NM_138554	exon3	c.G1096C	p.A366P	GGGAATGCTTTTT	.	128	35	137	0	.	0	0	0	0	0	C	120475502	G	C	120475502	3	2	31	1	0	0	0	0	1	0	0	0	15990	1319	46	3	1106	3	TLR4	9	120475502	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	421831	120475502	20737929	1305	6679										
MORN5	254956	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr9	124936842	124936842	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ggctattacgattgtggagaCggcttctataacccagtcac	10	10	2	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MORN5-90	NM_198469	exon4	c.C375A	p.D125E	TGGAGACGGCTTC	.	106	46	124	0	.	0	0	0	0	0	A	124936842	C	A	124936842	3	1	31	1	0	0	0	0	1	0	0	0	9739	535	19	2	389	2	MORN5	9	124936842	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	4461340	124936842	16276589	1306	6680										
LHX6	26468	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr9	124971944	124971944	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	atatcggctttgaggtggacGgggggtgcggtgtaaggcag	20	5	0	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	LHX6-90	NM_014368	exon9	c.C1107A	p.P369P	GTGGACGGGGGGT	.	201	91	159	0	.	0	0	0	0	0	T	124971944	G	T	124971944	2	4	31	1	0	0	0	0	0	0	0	1	8798	1103	39	2		2	LHX6	9	124971944	Silent	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	35102	124971944	16241487	1307	6681										
PTGS1	5742	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr9	125154577	125154577	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	catccaaactctatctttggGgagagtatgatagagattgg	11	6	2	3	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PTGS1-228	NM_000962	exon11	c.G1554T	p.G518G	CTTTGGGGAGAGT	.	178	67	129	0	.	0	0	0	0	0	T	125154577	G	T	125154577	2	4	31	1	0	0	0	0	0	0	0	1	12788	1219	43	3		3	PTGS1	9	125154577	Silent	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	182633	125154577	16058854	1308	6682										
OR1K1	392392	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr9	125562551	125562551	+	Silent	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ggactcattgtggctgccatCcaggccagtccagcccttca	10	15	2	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OR1K1-69	NM_080859	exon1	c.C150A	p.I50I	TGCCATCCAGGCC	.	255	102	161	0	.	0	0	0	0	0	A	125562551	C	A	125562551	2	1	31	1	0	0	0	0	0	0	0	1	10991	845	30	3		3	OR1K1	9	125562551	Silent	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	407974	125562551	15650880	1309	6683										
ZBTB26	57684	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr9	125681181	125681181	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	atctccactgtgaaggttaaGatgatcctgtaaggaacact	9	8	1	3	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ZBTB26-90	NM_020924	exon2	c.C1033T	p.L345F	GGTTAAGATGATC	.	76	24	95	0	.	0	0	0	0	0	A	125681181	G	A	125681181	3	1	31	1	0	0	0	0	1	0	0	0	17570	942	33	3	296	3	ZBTB26	9	125681181	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	118630	125681181	15532250	1310	6684										
CRB2	286204	hgsc.bcm.edu	37	chr9	126136139	126136139	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cgcccgtggccgctgtcacaCgcaccccgacggccgcttcg	12	20	1	0	rs73571431		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CRB2-91	NM_173689	exon10	c.C3329T	p.T1110M	GTCACACGCACCC	.	8	7	0	0	C|0.875;T|0.125	0	0	0	0	0	T	126136139	C	T	126136139	3	4	31	1	0	0	0	0	1	0	0	0	3855	536	19	1	3367	1	CRB2	9	126136139	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	454958	126136139	15077292	1311	6685										
OLFML2A	169611	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr9	127549290	127549290	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	accaggtgaggatgacctcgGagggctccgactgccgttgc	15	12	0	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OLFML2A-68	NM_182487	exon2	c.G127T	p.E43X	ACCTCGGAGGGCT	.	48	18	28	0	.	0	0	0	0	0	T	127549290	G	T	127549290	4	4	31	1	0	0	0	0	0	1	0	0	10886	1175	41	3	133	3	OLFML2A	9	127549290	Nonsense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	1413151	127549290	13664141	1312	6686										
GOLGA1	2800	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr9	127670717	127670717	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tggctgccaagagctgttgtCtggtatcctccaaattctgc	10	11	2	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GOLGA1-91	NM_002077	exon12	c.G1004A	p.R335K	TGTTGTCTGGTAT	.	96	34	78	0	.	0	0	0	0	0	T	127670717	C	T	127670717	3	4	31	1	0	0	0	0	1	0	0	0	6571	913	32	3	1347	3	GOLGA1	9	127670717	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	121427	127670717	13542714	1313	6687										
SH2D3C	10044	broad.mit.edu;bcgsc.ca	37	chr9	130501188	130501188	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	acacctccaggagctccggcCgggcctggaaccctgcagtg	13	16	0	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SH2D3C-228	NM_170600	exon12	c.G2420T	p.R807L	TCCGGCCGGGCCT	.	122	49	100	2	.	0	0	0	0	0	A	130501188	C	A	130501188	3	1	31	1	0	0	0	0	1	0	0	0	14269	652	23	2	166	2	SH2D3C	9	130501188	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	2830471	130501188	10712243	1314	6688										
SPTAN1	6709	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	131395498	131395498	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	taccccacagaacctgacccGggaacaagccgactactgcg	9	16	0	2	rs141980692	byfrequency	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SPTAN1-158	NM_001130438	exon57	c.G7319A	p.R2440Q	TGACCCGGGAACA	.	97	21	77	0	G|0.999;A|0.001	0	0	0	0	0	A	131395498	G	A	131395498	3	1	31	1	0	0	0	0	1	0	0	0	15154	1116	39	1	7541	1	SPTAN1	9	131395498	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	894310	131395498	9817933	1315	6689										
ZER1	10444	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr9	131513410	131513410	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ttggagctgaccttcagggcCcgcagcagctggttgcaacg	14	12	1	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ZER1-91	NM_006336	exon7	c.G1176T	p.R392R	CAGGGCCCGCAGC	.	150	50	85	0	.	0	0	0	0	0	A	131513410	C	A	131513410	2	1	31	1	0	0	0	0	0	0	0	1	17662	610	22	3		3	ZER1	9	131513410	Silent	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	117912	131513410	9700021	1316	6690										
ASS1	445	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr9	133342123	133342123	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tatgtccaggtcattgctccCtggaggatgcctgaattcta	10	10	2	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ASS1-91	NM_054012	exon6	c.C432T	p.P144P	TGCTCCCTGGAGG	.	130	44	100	0	.	0	0	0	0	0	T	133342123	C	T	133342123	2	4	31	1	0	0	0	0	0	0	0	1	1062	668	24	3		3	ASS1	9	133342123	Silent	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	1828713	133342123	7871308	1317	6691										
SETX	23064	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr9	135140278	135140278	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	caggcttgagtttcagaatcTtcactgcatcatgtctatag	8	9	5	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SETX-93	NM_015046	exon26	c.A7382T	p.K2461M	AGAATCTTCACTG	.	124	57	103	0	.	0	0	0	0	0	A	135140278	T	A	135140278	3	1	31	1	0	0	0	0	1	0	0	0	14176	1609	56	5	655	5	SETX	9	135140278	Missense_Mutation	SNP	T	TCGA-OR-A5KB-01A-11D-A30A-10	1798155	135140278	6073153	1318	6692										
SETX	23064	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr9	135210060	135210060	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cattttgtttgtctgagcccAacaacagggaatccatggct	9	10	1	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SETX-93	NM_015046	exon7	c.T773G	p.L258W	GAGCCCAACAACA	.	154	25	129	0	.	0	0	0	0	0	C	135210060	A	C	135210060	3	2	31	1	0	0	0	0	1	0	0	0	14176	131	5	5	7340	5	SETX	9	135210060	Missense_Mutation	SNP	A	TCGA-OR-A5KB-01A-11D-A30A-10	69782	135210060	6003371	1319	6693										
DDX31	64794	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	135505693	135505693	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	agttgacatattctgcctccGaaggagccaaaatgagcagg	11	9	1	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DDX31-226	NM_022779	exon16	c.C1904T	p.S635L	GCCTCCGAAGGAG	.	84	14	74	0	.	0	0	0	0	0	A	135505693	G	A	135505693	3	1	31	1	0	0	0	0	1	0	0	0	4362	1059	37	1	671	1	DDX31	9	135505693	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	295633	135505693	5707738	1320	6694										
GTF3C4	9329	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr9	135554353	135554353	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	agtgacggaaaggtgaggcaGctgattcccattttcacaga	12	8	1	4	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GTF3C4-91	NM_012204	exon2	c.G1347T	p.Q449H	GAGGCAGCTGATT	.	216	77	165	1	.	0	0	0	0	0	T	135554353	G	T	135554353	3	4	31	1	0	0	0	0	1	0	0	0	6896	962	34	3	1353	3	GTF3C4	9	135554353	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	48660	135554353	5659078	1321	6695										
TSC1	7248	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	135781060	135781060	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gagggcacaccatcttcctcTgtgtttccttttgctttctt	7	12	3	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TSC1-1906	NM_000368	exon15	c.A1905T	p.T635T	TTCCTCTGTGTTT	.	209	69	170	1	.	0	0	0	0	0	A	135781060	T	A	135781060	2	1	31	1	0	0	0	0	0	0	0	1	16643	1567	55	5		5	TSC1	9	135781060	Silent	SNP	T	TCGA-OR-A5KB-01A-11D-A30A-10	226707	135781060	5432371	1322	6696										
GBGT1	26301	bcgsc.ca	37	chr9	136029495	136029495	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tcctcccagtgggagtgaccCtggatggggatggagctgag	17	9	0	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GBGT1-90	NM_021996	exon7	c.G513T	p.Q171H	GTGACCCTGGATG	.	124	41	95	2	.	0	0	0	0	0	A	136029495	C	A	136029495	3	1	31	1	0	0	0	0	1	0	0	0	6292	680	24	3	534	3	GBGT1	9	136029495	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	248435	136029495	5183936	1323	6697										
ADAMTS13	11093	hgsc.bcm.edu;bcgsc.ca	37	chr9	136324173	136324173	+	Frame_Shift_Del	DEL	G	G	-													0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tgggagtcagagagcagccaGgctgagatggagttcagcga					novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ADAMTS13-229	NM_139025	exon29	c.4155delG	p.Q1385fs	CAGCCAGGCTGAG	.	226	81	174	1	.	0	0	0	0	0	-	136324173	G	-	136324173	7	5	31	1	0	1	0	1	0	0	0	0	258	991	35	0	4269	0	ADAMTS13	9	136324173	Frame_Shift_Del	DEL	G	TCGA-OR-A5KB-01A-11D-A30A-10	294678	136324173	4889258	1324	6698										
COL5A1	1289	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	137658845	137658845	+	Splice_Site	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ctttgctcttgtctcctgtaGggtccccagggagagcctgg	13	12	2	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	COL5A1-524	NM_000093	exon23	c.2134-1G>T	.	CCTGTAGGGTCCC	.	161	54	130	0	.	0	0	0	0	0	T	137658845	G	T	137658845	5	4	31	1	0	0	0	0	0	0	1	0	3702	1014	35	3	2223	3	COL5A1	9	137658845	Splice_Site	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	1334672	137658845	3554586	1325	6699										
SOHLH1	402381	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr9	138585537	138585537	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ggccccacggctccagagggCtgtcctggagctcctgggag	16	14	0	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SOHLH1-135	NM_001101677	exon8	c.G1070A	p.S357N	AGAGGGCTGTCCT	.	250	83	195	0	.	0	0	0	0	0	T	138585537	C	T	138585537	3	4	31	1	0	0	0	0	1	0	0	0	14958	797	28	3	97	3	SOHLH1	9	138585537	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	926692	138585537	2627894	1326	6700										
KCNT1	57582	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr9	138660771	138660771	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	aacctgaaaacaagtttcacGtcaagtttgctggtgcgtct	9	9	3	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	KCNT1-137	NM_020822	exon15	c.G1498T	p.V500F	TTTCACGTCAAGT	.	65	15	43	0	.	0	0	0	0	0	T	138660771	G	T	138660771	3	4	31	1	0	0	0	0	1	0	0	0	8112	1145	40	2	1556	2	KCNT1	9	138660771	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	75234	138660771	2552660	1327	6701										
SEC16A	9919	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	139341310	139341310	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ccaccgtacccgctcaccttGggctctggggcaggctctgg	13	16	3	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_014866	exon28	c.C6789T	p.P2263P	CACCTTGGGCTCT	.	80	33	73	1	.	0	0	0	0	0	A	139341310	G	A	139341310	2	1	31	1	0	0	0	0	0	0	0	1	14021	1335	47	3		3	SEC16A	9	139341310	Silent	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	680539	139341310	1872121	1328	6702										
NOTCH1	4851	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr9	139391450	139391450	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tcgggcttggccgccacgttCaggtgcccgatgcccaggtg	15	14	1	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	NOTCH1-5459	NM_017617	exon34	c.G6741C	p.L2247L	CACGTTCAGGTGC	.	171	44	14	0	.	0	0	0	0	0	G	139391450	C	G	139391450	2	3	31	1	0	0	0	0	0	0	0	1	10576	813	29	3		3	NOTCH1	9	139391450	Silent	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	50140	139391450	1821981	1329	6703										
LCN6	158062	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr9	139639178	139639178	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gccccatggcctcctggctgGctgtctccgtcagacctggg	13	16	2	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	LCN6-90	NM_198946	exon5	c.C428G	p.A143G	TGGCTGGCTGTCT	.	134	53	120	0	.	0	0	0	0	0	C	139639178	G	C	139639178	3	2	31	1	0	0	0	0	1	0	0	0	8707	1203	42	3	67	3	LCN6	9	139639178	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	247728	139639178	1574253	1330	6704										
SLC34A3	142680	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr9	140126591	140126591	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tggaccctccctcagctgaaGgacacaagccagccctggaa	10	15	1	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SLC34A3-90	NM_001177317	exon3	c.G153T	p.K51N	GCTGAAGGACACA	.	165	64	143	0	.	0	0	0	0	0	T	140126591	G	T	140126591	3	4	31	1	0	0	0	0	1	0	0	0	14604	991	35	3	159	3	SLC34A3	9	140126591	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	487413	140126591	1086840	1331	6705										
NOXA1	10811	hgsc.bcm.edu	37	chr9	140317999	140317999	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gccatggcctctctgggggaCctggtgcgcgcctggcacct	15	15	1	0	rs112864733		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	NOXA1-90	NM_006647	exon1	c.C18G	p.D6E	GGGGGACCTGGTG	.	17	11	0	0	C|0.934;G|0.066	0	0	0	0	0	G	140317999	C	G	140317999	3	3	31	1	0	0	0	0	1	0	0	0	10589	506	18	3	20	3	NOXA1	9	140317999	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	191408	140317999	895432	1332	6706										
EHMT1	79813	broad.mit.edu;bcgsc.ca	37	chr9	140671292	140671292	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gcagggccgacaccacaacgGgcaggtacctggcacaggct	14	14	0	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	EHMT1-154	NM_001145527	exon12	c.G2014T	p.G672C	ACAACGGGCAGGT	.	98	34	79	2	.	0	0	0	0	0	T	140671292	G	T	140671292	3	4	31	1	0	0	0	0	1	0	0	0	4994	1232	43	3	2060	3	EHMT1	9	140671292	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	353293	140671292	542139	1333	6707										
AKR1C4	1109	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr10	5254964	5254964	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gctttccttccagggtggacCcaaactccccagttcttttg	8	14	1	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	AKR1C4-91	NM_001818	exon7	c.C688A	p.P230T	GTGGACCCAAACT	.	224	81	169	0	.	0	0	0	0	0	A	5254964	C	A	5254964	3	1	31	1	0	0	0	0	1	0	0	0	472	623	22	3	714	3	AKR1C4	10	5254964	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10		5254964	130279783	1334	6708										
PRKCQ	5588	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr10	6521128	6521128	+	Splice_Site	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ttgaattctgccaggaagacCtagaaggagagggaagaagt	14	5	1	5	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PRKCQ-1380	NM_006257	exon13	c.1180-1G>T	.	GAAGACCTAGAAG	.	138	45	114	0	.	0	0	0	0	0	A	6521128	C	A	6521128	5	1	31	1	0	0	0	0	0	0	1	0	12547	695	24	3	969	3	PRKCQ	10	6521128	Splice_Site	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	1266164	6521128	129013619	1335	6709										
ITIH5	80760	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	7621911	7621911	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gtgcgtctccccgaccgtggGcttcccatccgtcaggaaga	12	15	2	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ITIH5-92	NM_001001851	exon9	c.C1225G	p.P409A	CCGTGGGCTTCCC	.	139	50	83	1	.	0	0	0	0	0	C	7621911	G	C	7621911	3	2	31	1	0	0	0	0	1	0	0	0	7928	1203	42	3	1750	3	ITIH5	10	7621911	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	1100783	7621911	127912836	1336	6710										
ITIH5	80760	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr10	7659227	7659227	+	Frame_Shift_Del	DEL	G	G	-													0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tttggttaatgacagtagatGggggaggcccagaatcatct					novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ITIH5-92	NM_001001851	exon6	c.671delC	p.P224fs	GTAGATGGGGGAG	.	50	22	56	0	.	0	0	0	0	0	-	7659227	G	-	7659227	7	5	31	1	0	1	0	1	0	0	0	0	7928	1348	47	0	2316	0	ITIH5	10	7659227	Frame_Shift_Del	DEL	G	TCGA-OR-A5KB-01A-11D-A30A-10	37316	7659227	127875520	1337	6711										
ITIH2	3698	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr10	7763735	7763735	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gagaagagaaggctggtgaaCtggaggtgagtgcacaccgg	18	6	0	4	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ITIH2-93	NM_002216	exon8	c.C862A	p.L288M	GGTGAACTGGAGG	.	219	76	191	0	.	0	0	0	0	0	A	7763735	C	A	7763735	3	1	31	1	0	0	0	0	1	0	0	0	7925	564	20	3	892	3	ITIH2	10	7763735	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	104508	7763735	127771012	1338	6712										
ATP5C1	509	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr10	7841035	7841035	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gtgtcctcagatcgaggactGtgtggtgctattcattcctc	11	10	2	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ATP5C1-90	NM_005174	exon4	c.G306C	p.L102L	AGGACTGTGTGGT	.	306	85	306	0	.	0	0	0	0	0	C	7841035	G	C	7841035	2	2	31	1	0	0	0	0	0	0	0	1	1150	1364	48	3		3	ATP5C1	10	7841035	Silent	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	77300	7841035	127693712	1339	6713										
UPF2	26019	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	12046670	12046670	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	atcttcccatataccaccttCcaagtcatattctccaggtt	3	14	3	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	UPF2-515	NM_080599	exon5	c.G1363T	p.E455X	CACCTTCCAAGTC	.	75	35	68	1	.	0	0	0	0	0	A	12046670	C	A	12046670	4	1	31	1	0	0	0	0	0	1	0	0	17042	864	30	3	2527	3	UPF2	10	12046670	Nonsense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	4205635	12046670	123488077	1340	6714										
UCMA	221044	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	13275734	13275734	+	Splice_Site	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gtgggtggcccctgcactcaCcttcactcgcctcttctccc	8	19	4	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	UCMA-90	NM_145314	exon3	c.124+1G>T	.	CACTCACCTTCAC	.	84	30	67	0	.	0	0	0	0	0	A	13275734	C	A	13275734	5	1	31	1	0	0	0	0	0	0	1	0	16964	521	18	3	307	3	UCMA	10	13275734	Splice_Site	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	1229064	13275734	122259013	1341	6715										
CUBN	8029	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr10	16949626	16949626	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tctcattgcttacattcacaCtactacacagtttctctagc	3	13	3	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CUBN-166	NM_001081	exon49	c.G7586A	p.S2529N	TTCACACTACTAC	.	190	71	163	0	.	0	0	0	0	0	T	16949626	C	T	16949626	3	4	31	1	0	0	0	0	1	0	0	0	4057	565	20	3	3361	3	CUBN	10	16949626	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	3673892	16949626	118585121	1342	6716										
CUBN	8029	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr10	16970184	16970184	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	aaggatgcattgaagcctgcCctggttacactggagtccga	12	10	0	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CUBN-166	NM_001081	exon41	c.G6243C	p.R2081S	GCCTGCCCTGGTT	.	59	32	65	0	.	0	0	0	0	0	G	16970184	C	G	16970184	3	3	31	1	0	0	0	0	1	0	0	0	4057	622	22	3	4736	3	CUBN	10	16970184	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	20558	16970184	118564563	1343	6717										
VIM	7431	broad.mit.edu;bcgsc.ca	37	chr10	17275787	17275787	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	aggaaatccaggagctgcagGctcagattcaggaacagcat	12	9	2	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	VIM-291	NM_003380	exon5	c.G739C	p.A247P	CTGCAGGCTCAGA	.	223	82	201	3	.	0	0	0	0	0	C	17275787	G	C	17275787	3	2	31	1	0	0	0	0	1	0	0	0	17204	1203	42	3	753	3	VIM	10	17275787	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	305603	17275787	118258960	1344	6718										
PTPLA	9200	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr10	17636354	17636354	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	aagttcaccagcaactccaaCaggatataagatgataaaaa	6	8	1	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PTPLA-226	NM_014241	exon6	c.G634A	p.V212I	CTCCAACAGGATA	.	66	21	66	1	.	0	0	0	0	0	T	17636354	C	T	17636354	3	4	31	1	0	0	0	0	1	0	0	0	12807	478	17	3	240	3	PTPLA	10	17636354	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	360567	17636354	117898393	1345	6719										
MRC1	4360	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr10	18138668	18138668	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cacaccatcgaggaattggaCtttattatctcccagctagg	8	11	1	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MRC1-68	NM_002438	exon7	c.C1224G	p.D408E	ATTGGACTTTATT	.	311	235	306	1	.	0	0	0	0	0	G	18138668	C	G	18138668	3	3	31	1	0	0	0	0	1	0	0	0	9784	564	20	3	5741	3	MRC1	10	18138668	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	502314	18138668	117396079	1346	6720										
SLC39A12	221074	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr10	18254445	18254445	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	aaacgctgcagaaaaaatctGgaatagtgagcagtgaaggt	12	5	1	3	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SLC39A12-154	NM_152725	exon4	c.G577T	p.G193X	AAATCTGGAATAG	.	49	12	62	0	.	0	0	0	0	0	T	18254445	G	T	18254445	4	4	31	1	0	0	0	0	0	1	0	0	14650	1349	47	3	587	3	SLC39A12	10	18254445	Nonsense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	115777	18254445	117280302	1347	6721										
MSRB2	22921	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr10	23408289	23408289	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ttcgttttccgaggctcatgGtacgtctggctctgatgaaa	11	9	3	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MSRB2-90	NM_012228	exon4	c.G353A	p.G118D	CTCATGGTACGTC	.	153	54	116	0	.	0	0	0	0	0	A	23408289	G	A	23408289	3	1	31	1	0	0	0	0	1	0	0	0	9916	1261	44	3	367	3	MSRB2	10	23408289	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	5153844	23408289	112126458	1348	6722										
GPR158	57512	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr10	25701255	25701255	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tatgtctgcctaccttgcagGgagggctgccccttctgtgc	12	13	2	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GPR158-141	NM_020752	exon4	c.G1188T	p.R396S	TTGCAGGGAGGGC	.	242	86	206	0	.	0	0	0	0	0	T	25701255	G	T	25701255	3	4	31	1	0	0	0	0	1	0	0	0	6683	1223	43	3	1202	3	GPR158	10	25701255	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	2292966	25701255	109833492	1349	6723										
GPR158	57512	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	25839904	25839904	+	Splice_Site	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ctttctgttttcatcccacaGgttgttattttgtactttga	6	8	2	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GPR158-141	NM_020752	exon6	c.1405-1G>T	.	CCCACAGGTTGTT	.	160	52	118	0	.	0	0	0	0	0	T	25839904	G	T	25839904	5	4	31	1	0	0	0	0	0	0	1	0	6683	1014	35	3	1426	3	GPR158	10	25839904	Splice_Site	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	138649	25839904	109694843	1350	6724										
GPR158	57512	ucsc.edu;bcgsc.ca;mdanderson.org	37	chr10	25861668	25861668	+	Silent	SNP	G	G	A													0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	atgctggcagtaatactcttGgtagtgttttggtttctcat					novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GPR158-141	NM_020752	exon7	c.G1605A	p.L535L	ACTCTTGGTAGTG	.	233	71	203	2	.	0	0	0	0	0	A	25861668	G	A	25861668	2	1	31	1	0	0	0	0	0	0	0	1	6683	1339	47	3		3	GPR158	10	25861668	Silent	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	21764	25861668	109673079	1351	6725	66	2								
GPR158	57512	ucsc.edu;bcgsc.ca	37	chr10	25861669	25861669	+	Missense_Mutation	SNP	G	G	T													0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tgctggcagtaatactcttgGtagtgttttggtttctcatt					novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GPR158-141	NM_020752	exon7	c.G1606T	p.V536L	CTCTTGGTAGTGT	.	234	72	203	2	.	0	0	0	0	0	T	25861669	G	T	25861669	3	4	31	1	0	0	0	0	1	0	0	0	6683	1261	44	3	1632	3	GPR158	10	25861669	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	1	25861669	109673078	1352	6726	66	2								
GPR158	57512	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr10	25885596	25885596	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cacattcaagcaataacccaCgagatgatattgctacagaa	6	10	1	3	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GPR158-141	NM_020752	exon10	c.C2023G	p.R675G	AACCCACGAGATG	.	125	41	141	0	.	0	0	0	0	0	G	25885596	C	G	25885596	3	3	31	1	0	0	0	0	1	0	0	0	6683	528	19	2	2061	2	GPR158	10	25885596	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	23927	25885596	109649151	1353	6727										
GPR158	57512	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	25887095	25887095	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ggaggagacaacagaaaattCcacactggaatccctgtcgg	11	10	0	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GPR158-141	NM_020752	exon11	c.C2540A	p.S847Y	AAAATTCCACACT	.	152	47	169	1	.	0	0	0	0	0	A	25887095	C	A	25887095	3	1	31	1	0	0	0	0	1	0	0	0	6683	855	30	3	2582	3	GPR158	10	25887095	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	1499	25887095	109647652	1354	6728										
MYO3A	53904	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr10	26459432	26459432	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	aaccattcaaacttctgatcAggaattcgactacaagaaaa	5	9	3	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MYO3A-1007	NM_017433	exon29	c.A3362T	p.Q1121L	CTGATCAGGAATT	.	250	64	273	0	.	0	0	0	0	0	T	26459432	A	T	26459432	3	4	31	1	0	0	0	0	1	0	0	0	10104	188	7	5	3468	5	MYO3A	10	26459432	Missense_Mutation	SNP	A	TCGA-OR-A5KB-01A-11D-A30A-10	572337	26459432	109075315	1355	6729										
ZEB1	6935	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr10	31750115	31750115	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cagaccagacagtgttaccaGggaggagcagtgaaagagaa	14	7	0	4	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ZEB1-518	NM_001174093	exon2	c.G208T	p.G70W	TTACCAGGGAGGA	.	279	103	240	0	.	0	0	0	0	0	T	31750115	G	T	31750115	3	4	31	1	0	0	0	0	1	0	0	0	17660	1000	35	3	225	3	ZEB1	10	31750115	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	5290683	31750115	103784632	1356	6730										
ANKRD30A	91074	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr10	37422904	37422904	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	atagttggcatgcttcttcaGcaaaatgttgacgtctttgc	9	8	3	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ANKRD30A-161	NM_052997	exon5	c.G510T	p.Q170H	TCTTCAGCAAAAT	.	152	66	157	0	.	0	0	0	0	0	T	37422904	G	T	37422904	3	4	31	1	0	0	0	0	1	0	0	0	658	962	34	3	528	3	ANKRD30A	10	37422904	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	5672789	37422904	98111843	1357	6731										
ANKRD30A	91074	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr10	37508068	37508068	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	taagattttaaaagaaaagaAtgctgaacttcagatgaccc	7	6	1	6	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ANKRD30A-161	NM_052997	exon34	c.A3260G	p.N1087S	AAAAGAATGCTGA	.	252	49	240	0	.	0	0	0	0	0	G	37508068	A	G	37508068	3	3	31	1	0	0	0	0	1	0	0	0	658	101	4	4	3394	4	ANKRD30A	10	37508068	Missense_Mutation	SNP	A	TCGA-OR-A5KB-01A-11D-A30A-10	85164	37508068	98026679	1358	6732										
ZNF33A	7581	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr10	38305844	38305844	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tatcatttaaagatgtgactGtgggcttcacccaggaggag	12	7	2	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ZNF33A-93	NM_006954	exon3	c.G55T	p.V19L	GTGACTGTGGGCT	.	319	107	286	1	.	0	0	0	0	0	T	38305844	G	T	38305844	3	4	31	1	0	0	0	0	1	0	0	0	17891	1377	48	3	61	3	ZNF33A	10	38305844	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	797776	38305844	97228903	1359	6733										
RET	5979	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr10	43609034	43609034	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tgttgggggacacgagcctgGggagccccgggggattaaag	19	8	0	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	RET-4507	NM_020630	exon10	c.G1790T	p.G597V	AGCCTGGGGAGCC	.	33	14	21	0	.	0	0	0	0	0	T	43609034	G	T	43609034	3	4	31	1	0	0	0	0	1	0	0	0	13270	1232	43	3	1828	3	RET	10	43609034	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	5303190	43609034	91925713	1360	6734										
RASGEF1A	221002	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr10	43692433	43692433	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gcagccctcaccttcctcgcTgtagatgggcgccgtgagca	12	15	1	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	RASGEF1A-227	NM_145313	exon11	c.A1339T	p.S447C	CCTCGCTGTAGAT	.	150	62	154	0	.	0	0	0	0	0	A	43692433	T	A	43692433	3	1	31	1	0	0	0	0	1	0	0	0	13104	1580	55	5	118	5	RASGEF1A	10	43692433	Missense_Mutation	SNP	T	TCGA-OR-A5KB-01A-11D-A30A-10	83399	43692433	91842314	1361	6735										
PPYR1	5540	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr10	47087507	47087507	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cacgcatctaccggcgcctgCagaggcaggggcgcgtgttt	15	13	1	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PPYR1-524	NM_005972	exon3	c.C724A	p.Q242K	CGCCTGCAGAGGC	.	131	28	121	0	.	0	0	0	0	0	A	47087507	C	A	47087507	3	1	31	1	0	0	0	0	1	0	0	0	12448	711	25	3	726	3	PPYR1	10	47087507	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	3395074	47087507	88447240	1362	6736										
ARHGAP22	58504	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr10	49658873	49658873	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cccgatagggacctcggctgCcggaaggaggacttccaact	13	13	0	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ARHGAP22-228	NM_001256024	exon9	c.G1347C	p.R449R	CGGCTGCCGGAAG	.	186	68	106	0	.	0	0	0	0	0	G	49658873	C	G	49658873	2	3	31	1	0	0	0	0	0	0	0	1	872	726	26	3		3	ARHGAP22	10	49658873	Silent	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	2571366	49658873	85875874	1363	6737										
C10orf71	118461	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	50530784	50530784	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tatcacccgacaggtgtttgGgacttttcaccagagaacag	10	10	2	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	C10orf71-90	NM_001135196	exon3	c.G194T	p.G65V	TGTTTGGGACTTT	.	264	92	247	1	.	0	0	0	0	0	T	50530784	G	T	50530784	3	4	31	1	0	0	0	0	1	0	0	0	1618	1232	43	3	196	3	C10orf71	10	50530784	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	871911	50530784	85003963	1364	6738										
C10orf71	118461	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	chr10	50532949	50532949	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	agtactgtgccttaagcaatGggcacgcatgcctggaaaac	11	10	0	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	C10orf71-90	NM_001135196	exon3	c.G2359T	p.G787W	AGCAATGGGCACG	.	197	68	153	0	.	0	0	0	0	0	T	50532949	G	T	50532949	3	4	31	1	0	0	0	0	1	0	0	0	1618	1348	47	3	2361	3	C10orf71	10	50532949	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	2165	50532949	85001798	1365	6739										
C10orf71	118461	bcgsc.ca	37	chr10	50534259	50534259	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	acacagcaaaggccgctgtgCcccagagagaggccccgaca	12	15	0	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	C10orf71-90	NM_001135196	exon3	c.C3669A	p.C1223X	GCTGTGCCCCAGA	.	221	80	173	2	.	0	0	0	0	0	A	50534259	C	A	50534259	4	1	31	1	0	0	0	0	0	1	0	0	1618	747	26	3	3671	3	C10orf71	10	50534259	Nonsense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	1310	50534259	85000488	1366	6740										
SLC18A3	6572	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr10	50819769	50819769	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ggcttccgagtgggagatggGcatggcctggctgccggcct	18	11	0	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SLC18A3-92	NM_003055	exon1	c.G983T	p.G328V	AGATGGGCATGGC	.	59	17	39	0	.	0	0	0	0	0	T	50819769	G	T	50819769	3	4	31	1	0	0	0	0	1	0	0	0	14462	1203	42	3	985	3	SLC18A3	10	50819769	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	285510	50819769	84714978	1367	6741										
CHAT	1103	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr10	50854688	50854688	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gcggaggctacagcaagaacGgggccaatcgctggtacgac	15	11	0	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CHAT-514	NM_020549	exon8	c.G1249C	p.G417R	AAGAACGGGGCCA	.	273	86	235	0	.	0	0	0	0	0	C	50854688	G	C	50854688	3	2	31	1	0	0	0	0	1	0	0	0	3319	1116	39	2	1323	2	CHAT	10	50854688	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	34919	50854688	84680059	1368	6742										
PARG	8505	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr10	51040918	51040918	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ggccactgcagaaagattctCtgaagaaactccaggacgga	11	10	1	4	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PARG-948	NM_003631	exon16	c.G2578T	p.E860X	GATTCTCTGAAGA	.	163	52	145	0	.	0	0	0	0	0	A	51040918	C	A	51040918	4	1	31	1	0	0	0	0	0	1	0	0	11477	922	32	3	364	3	PARG	10	51040918	Nonsense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	186230	51040918	84493829	1369	6743										
SGMS1	259230	broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr10	52067049	52067049	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ctgtaccaccacaccctggcCaggaggttcatctgggaagc	11	14	2	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SGMS1-227	NM_147156	exon11	c.G1095C	p.L365L	CCTGGCCAGGAGG	.	112	54	80	2	.	0	0	0	0	0	G	52067049	C	G	52067049	2	3	31	1	0	0	0	0	0	0	0	1	14249	581	21	3		3	SGMS1	10	52067049	Silent	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	1026131	52067049	83467698	1370	6744										
A1CF	29974	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr10	52573773	52573773	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tatgccaaatagccacggccGcccagtcctctcactcccgc	7	19	1	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	A1CF-68	NM_001198819	exon12	c.C1215A	p.G405G	ACGGCCGCCCAGT	.	93	32	83	0	.	0	0	0	0	0	T	52573773	G	T	52573773	2	4	31	1	0	0	0	0	0	0	0	1	2	1074	38	2		2	A1CF	10	52573773	Silent	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	506724	52573773	82960974	1371	6745										
PCDH15	65217	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr10	56106181	56106181	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ctgtccatttggtccatcatCtatatctgtagctccattgt	6	11	3	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PCDH15-193	NM_001142763	exon7	c.G553C	p.D185H	CATCATCTATATC	.	75	15	56	0	.	0	0	0	0	0	G	56106181	C	G	56106181	3	3	31	1	0	0	0	0	1	0	0	0	11540	913	32	3	7085	3	PCDH15	10	56106181	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	3532408	56106181	79428566	1372	6746										
BICC1	80114	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr10	60562966	60562966	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cagcaaaactccgaaagggcCcaccttgctccacggtcatc	8	16	1	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	BICC1-72	NM_001080512	exon15	c.C2145T	p.A715A	AAGGGCCCACCTT	.	108	26	152	0	.	0	0	0	0	0	T	60562966	C	T	60562966	2	4	31	1	0	0	0	0	0	0	0	1	1428	610	22	3		3	BICC1	10	60562966	Silent	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	4456785	60562966	74971781	1373	6747										
FAM13C	220965	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr10	61029737	61029737	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tctggctttggctgaagatgGagcatcgtggcgacagcagt	15	8	1	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FAM13C-70	NM_198215	exon7	c.C725A	p.S242Y	AAGATGGAGCATC	.	130	53	216	0	.	0	0	0	0	0	T	61029737	G	T	61029737	3	4	31	1	0	0	0	0	1	0	0	0	5470	1174	41	3	1064	3	FAM13C	10	61029737	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	466771	61029737	74505010	1374	6748										
FAM13C	220965	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	61112192	61112192	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ggcggcgcgtgctcttctacCagagcccctgcgtcggggta	15	14	2	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FAM13C-70	NM_198215	exon3	c.G162T	p.L54L	TTCTACCAGAGCC	.	33	8	36	0	.	0	0	0	0	0	A	61112192	C	A	61112192	2	1	31	1	0	0	0	0	0	0	0	1	5470	581	21	3		3	FAM13C	10	61112192	Silent	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	82455	61112192	74422555	1375	6749										
ANK3	288	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr10	61815615	61815615	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gttcttcaacatgaccagatCcatgtatttttggtttcaga	7	8	3	3	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ANK3-107	NM_020987	exon42	c.G12866C	p.G4289A	CCAGATCCATGTA	.	111	47	123	0	.	0	0	0	0	0	G	61815615	C	G	61815615	3	3	31	1	0	0	0	0	1	0	0	0	622	855	30	3	275	3	ANK3	10	61815615	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	703423	61815615	73719132	1376	6750										
CTNNA3	29119	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	68139070	68139071	+	Missense_Mutation	DNP	GG	GG	TT													0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tcagcatcctggtctcttaaGgctatgatacacttgttgac					novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	GG	GG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CTNNA3-234	NM_013266	exon12	c.C1571A	p.A524E	CTTAAGGCTATGA	.	123	7	115	0	.	0	0	0	0	0	TT	68139071	GG	TT	68139070	3	4	31	1	0	0	0	0	1	0	0	0	4020	987	35	3	1143	3	CTNNA3	10	68139070	Missense_Mutation	DNP	GG	TCGA-OR-A5KB-01A-11D-A30A-10	6323455	68139070	67395677	1377	6751										
TET1	80312	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr10	70450767	70450767	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	aagaatgacgcaacagcctcAtgcgggttttcagaaagaag	11	8	2	4	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TET1-663	NM_030625	exon12	c.A5607T	p.S1869S	AGCCTCATGCGGG	.	96	26	74	0	.	0	0	0	0	0	T	70450767	A	T	70450767	2	4	31	1	0	0	0	0	0	0	0	1	15806	204	8	5		5	TET1	10	70450767	Silent	SNP	A	TCGA-OR-A5KB-01A-11D-A30A-10	2311697	70450767	65083980	1378	6752										
STOX1	219736	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr10	70644278	70644278	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gcccccatatcccactgtcaGtcttgccagtgtttccggga	9	15	2	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	STOX1-92	NM_152709	exon3	c.G726T	p.Q242H	CTGTCAGTCTTGC	.	109	46	126	0	.	0	0	0	0	0	T	70644278	G	T	70644278	3	4	31	1	0	0	0	0	1	0	0	0	15356	1020	36	3	736	3	STOX1	10	70644278	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	193511	70644278	64890469	1379	6753										
COL13A1	1305	broad.mit.edu;bcgsc.ca	37	chr10	71658494	71658494	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gtgcgactggctccacccccGgtcataaaaaggcggacgtt	12	13	1	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	COL13A1-91	NM_001130103	exon14	c.G756T	p.P252P	ACCCCCGGTCATA	.	79	12	79	0	.	0	0	0	0	0	T	71658494	G	T	71658494	2	4	31	1	0	0	0	0	0	0	0	1	3676	1103	39	2		2	COL13A1	10	71658494	Silent	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	1014216	71658494	63876253	1380	6754										
CDH23	64072	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr10	73326680	73326680	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cacacaggcctaccagctcaCggtcaacgccacagtgagtc	9	16	2	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CDH23-563	NM_052836	exon7	c.C611A	p.T204K	AGCTCACGGTCAA	.	29	22	50	0	.	0	0	0	0	0	A	73326680	C	A	73326680	3	1	31	1	0	0	0	0	1	0	0	0	3114	536	19	2	633	2	CDH23	10	73326680	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	1668186	73326680	62208067	1381	6755										
CDH23	64072	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr10	73405591	73405591	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ctgcactcttgacccagggcCtgaacagcatgtttgaggtg	12	11	1	3	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CDH23-563	NM_052836	exon12	c.C1144A	p.L382M	CAGGGCCTGAACA	.	237	96	218	0	.	0	0	0	0	0	A	73405591	C	A	73405591	3	1	31	1	0	0	0	0	1	0	0	0	3114	680	24	3	1273	3	CDH23	10	73405591	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	78911	73405591	62129156	1382	6756										
CDH23	64072	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	73447457	73447457	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cccgcctacttcgtctccgtGgtggagaacatcatggcagg	12	13	2	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CDH23-563	NM_022124	exon18	c.G2040T	p.V680V	CTCCGTGGTGGAG	.	129	29	103	1	.	0	0	0	0	0	T	73447457	G	T	73447457	2	4	31	1	0	0	0	0	0	0	0	1	3114	1335	47	3		3	CDH23	10	73447457	Silent	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	41866	73447457	62087290	1383	6757										
CHST3	9469	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr10	73766985	73766985	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tagcagatgccaacagcaccGacccagccctgatcttagct	8	15	1	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CHST3-90	NM_004273	exon3	c.G196T	p.D66Y	AGCACCGACCCAG	.	105	39	123	0	.	0	0	0	0	0	T	73766985	G	T	73766985	3	4	31	1	0	0	0	0	1	0	0	0	3411	1058	37	2	202	2	CHST3	10	73766985	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	319528	73766985	61767762	1384	6758										
PPP3CB	5532	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr10	75239173	75239173	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	caatttcttcatctactcgaCcttctttcaccaagtggttc	4	13	5	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PPP3CB-226	NM_001142354	exon2	c.G188T	p.G63V	ACTCGACCTTCTT	.	107	29	126	0	.	0	0	0	0	0	A	75239173	C	A	75239173	3	1	31	1	0	0	0	0	1	0	0	0	12430	507	18	3	1441	3	PPP3CB	10	75239173	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	1472188	75239173	60295574	1385	6759										
DUSP13	51207	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	76861715	76861715	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tgtctccgcacacttgatgcTgtttctattttttgatttga	7	8	2	3	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DUSP13-226	NM_001007273	exon3	c.A188T	p.Q63L	TGATGCTGTTTCT	.	56	10	62	0	.	0	0	0	0	0	A	76861715	T	A	76861715	3	1	31	1	0	0	0	0	1	0	0	0	4824	1580	55	5	703	5	DUSP13	10	76861715	Missense_Mutation	SNP	T	TCGA-OR-A5KB-01A-11D-A30A-10	1622542	76861715	58673032	1386	6760										
RPS24	6229	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr10	79814544	79814544	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gccttttggagagggcactgGtcagaaacggagccttcatg	14	9	2	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	RPS24-91	NM_001142285	exon5	c.G646T	p.V216F	GCACTGGTCAGAA	.	192	82	173	0	.	0	0	0	0	0	T	79814544	G	T	79814544	3	4	31	1	0	0	0	0	1	0	0	0	13670	1261	44	3	703	3	RPS24	10	79814544	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	2952829	79814544	55720203	1387	6761										
CDHR1	92211	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr10	85961590	85961590	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	actccccatttgccgtggacCgccacagcggtgtgctgcgc	12	16	0	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CDHR1-91	NM_001171971	exon7	c.C553A	p.R185S	GTGGACCGCCACA	.	33	16	30	0	.	0	0	0	0	0	A	85961590	C	A	85961590	3	1	31	1	0	0	0	0	1	0	0	0	3124	652	23	2	579	2	CDHR1	10	85961590	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	6147046	85961590	49573157	1388	6762										
BMPR1A	657	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr10	88649911	88649911	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gagtaaccttagcaccagagGataccttgccttttttaaag	8	9	0	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	BMPR1A-1619	NM_004329	exon4	c.G160C	p.D54H	CCAGAGGATACCT	.	234	47	254	0	.	0	0	0	0	0	C	88649911	G	C	88649911	3	2	31	1	0	0	0	0	1	0	0	0	1470	1174	41	3	166	3	BMPR1A	10	88649911	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	2688321	88649911	46884836	1389	6763										
IFIT5	24138	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr10	91177055	91177055	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gaagacattgatctgtttgaGgtagaagatacaattgggca	12	4	1	5	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	IFIT5-90	NM_012420	exon2	c.G99A	p.E33E	GTTTGAGGTAGAA	.	125	40	138	0	.	0	0	0	0	0	A	91177055	G	A	91177055	2	1	31	1	0	0	0	0	0	0	0	1	7546	991	35	3		3	IFIT5	10	91177055	Silent	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	2527144	91177055	44357692	1390	6764										
IDE	3416	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr10	94239048	94239048	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	acttacatacatcccatagaTggtattttggagatcatagc	7	8	1	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	IDE-92	NM_004969	exon15	c.A1870G	p.I624V	CATAGATGGTATT	.	77	26	88	1	.	0	0	0	0	0	C	94239048	T	C	94239048	3	2	31	1	0	0	0	0	1	0	0	0	7514	1464	51	4	1233	4	IDE	10	94239048	Missense_Mutation	SNP	T	TCGA-OR-A5KB-01A-11D-A30A-10	3061993	94239048	41295699	1391	6765										
ALDH18A1	5832	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr10	97386505	97386505	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	atccttcctccagatcgcgcCatttctccctgctgctcaac	5	18	2	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ALDH18A1-117	NM_002860	exon10	c.G1107T	p.M369I	TCGCGCCATTTCT	.	97	21	115	1	.	0	0	0	0	0	A	97386505	C	A	97386505	3	1	31	1	0	0	0	0	1	0	0	0	489	594	21	3	1316	3	ALDH18A1	10	97386505	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	3147457	97386505	38148242	1392	6766										
PIK3AP1	118788	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr10	98355338	98355338	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gttttaggaggtggaatcagCgtcctctgggtggaacaggt	16	6	2	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PIK3AP1-519	NM_152309	exon17	c.G2414C	p.R805P	AATCAGCGTCCTC	.	180	39	203	0	.	0	0	0	0	0	G	98355338	C	G	98355338	3	3	31	1	0	0	0	0	1	0	0	0	11937	768	27	2	7	2	PIK3AP1	10	98355338	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	968833	98355338	37179409	1393	6767										
SLIT1	6585	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	98766287	98766287	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gttttgcaggtcagtgaactGcaggtaagtgtcccgatcca	12	9	1	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SLIT1-94	NM_003061	exon32	c.C3532A	p.Q1178K	TGAACTGCAGGTA	.	229	91	212	1	.	0	0	0	0	0	T	98766287	G	T	98766287	3	4	31	1	0	0	0	0	1	0	0	0	14774	1328	46	3	1096	3	SLIT1	10	98766287	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	410949	98766287	36768460	1394	6768										
PYROXD2	84795	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr10	100143584	100143584	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cttgaggtccctaaaggccaCatgtgctgcatttcgcccag	10	13	0	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PYROXD2-90	NM_032709	exon16	c.G1717C	p.V573L	AGGCCACATGTGC	.	102	41	116	1	.	0	0	0	0	0	G	100143584	C	G	100143584	3	3	31	1	0	0	0	0	1	0	0	0	12902	478	17	3	32	3	PYROXD2	10	100143584	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	1377297	100143584	35391163	1395	6769										
PYROXD2	84795	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr10	100159880	100159880	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tgggcatccttctgggagaaCtgggcgatctgcttctggtt	14	9	3	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PYROXD2-90	NM_032709	exon5	c.G450T	p.Q150H	GGAGAACTGGGCG	.	79	32	109	0	.	0	0	0	0	0	A	100159880	C	A	100159880	3	1	31	1	0	0	0	0	1	0	0	0	12902	564	20	3	1343	3	PYROXD2	10	100159880	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	16296	100159880	35374867	1396	6770										
CWF19L1	55280	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr10	101995432	101995432	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	agaaaaacataccttccaaaCtgcaaaggaaaattcttttt	4	8	1	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CWF19L1-90	NM_018294	exon13	c.G1464A	p.Q488Q	TCCAAACTGCAAA	.	25	6	23	0	.	0	0	0	0	0	T	101995432	C	T	101995432	2	4	31	1	0	0	0	0	0	0	0	1	4077	564	20	3		3	CWF19L1	10	101995432	Silent	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	1835552	101995432	33539315	1397	6771										
PAX2	5076	hgsc.bcm.edu;bcgsc.ca	37	chr10	102509533	102509534	+	Frame_Shift_Ins	INS	-	-	A													0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ggtgtgaaccagctcgggggINSggtgtttgtgaacggccggc					novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PAX2-90	NM_003987	exon2	c.74_75insA	p.G25fs	TCGGGGGGGTGTT	.	114	30	59	0	.	0	0	0	0	0	A	102509534	-	A	102509533	7	5	31	1	0	1	1	0	0	0	0	0	11508	1232	43	0	80	0	PAX2	10	102509533	Frame_Shift_Ins	INS	-	TCGA-OR-A5KB-01A-11D-A30A-10	514101	102509533	33025214	1398	6772										
PAX2	5076	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr10	102568924	102568924	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ttgatgaagtcaagtcgagtCtatctgcatccaccaaccct	7	12	3	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PAX2-90	NM_003987	exon8	c.C919T	p.L307L	TCGAGTCTATCTG	.	100	43	100	0	.	0	0	0	0	0	T	102568924	C	T	102568924	2	4	31	1	0	0	0	0	0	0	0	1	11508	912	32	3		3	PAX2	10	102568924	Silent	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	59391	102568924	32965823	1399	6773										
NFKB2	4791	hgsc.bcm.edu	37	chr10	104159416	104159416	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tacggcgtcaccgcggacgcGcgcgcgctgctggcgggaca	17	15	1	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	NFKB2-522	NM_001077494	exon14	c.G1410T	p.A470A	GGACGCGCGCGCG	.	68	25	2	0	.	0	0	0	0	0	T	104159416	G	T	104159416	2	4	31	1	0	0	0	0	0	0	0	1	10405	1074	38	2		2	NFKB2	10	104159416	Silent	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	1590492	104159416	31375331	1400	6774										
C10orf95	79946	hgsc.bcm.edu	37	chr10	104210735	104210735	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tcccgggccggctgcggaagCtgtgggcctggactgggggt	20	11	0	0	rs2281878	byfrequency	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	C10orf95-91	NM_024886	exon2	c.G253T	p.A85S	CGGAAGCTGTGGG	.	24	20	0	0	C|0.759;A|0.241	0	0	0	0	0	A	104210735	C	A	104210735	3	1	31	1	0	0	0	0	1	0	0	0	1630	797	28	3	524	3	C10orf95	10	104210735	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	51319	104210735	31324012	1401	6775										
INA	9118	hgsc.bcm.edu	37	chr10	105037222	105037222	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ccaggcggcggcgcgcaccaAcgagtacaagatcatccgca	12	15	1	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	INA-154	NM_032727	exon1	c.A254G	p.N85S	GCACCAACGAGTA	.	50	13	10	0	.	0	0	0	0	0	G	105037222	A	G	105037222	3	3	31	1	0	0	0	0	1	0	0	0	7751	43	2	4	256	4	INA	10	105037222	Missense_Mutation	SNP	A	TCGA-OR-A5KB-01A-11D-A30A-10	826487	105037222	30497525	1402	6776										
PCGF6	84108	hgsc.bcm.edu	37	chr10	105110740	105110741	+	In_Frame_Ins	INS	-	-	GGAGGC													0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tgagggcgggcggggagacaINSggaggcggaggcggcaaggc					rs113359610		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PCGF6-226	NM_032154	exon1	c.84_85insGCCTCC	p.P28delinsPPP	GGAGACAGGAGGC	.	21	15	0	0	-|0.590;GGAGGC|0.410	0	0	0	0	0	GGAGGC	105110741	-	GGAGGC	105110740	7	5	31	1	0	1	1	0	0	0	0	0	11607	175	7	0	1008	0	PCGF6	10	105110740	In_Frame_Ins	INS	-	TCGA-OR-A5KB-01A-11D-A30A-10	73518	105110740	30424007	1403	6777										
SORCS3	22986	hgsc.bcm.edu;broad.mit.edu	37	chr10	106401534	106401534	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ggacgcctgggccactgctcCggccgatggttccagaggaa	15	13	0	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SORCS3-99	NM_014978	exon1	c.C449T	p.P150L	CTGCTCCGGCCGA	.	107	14	18	0	.	0	0	0	0	0	T	106401534	C	T	106401534	3	4	31	1	0	0	0	0	1	0	0	0	14967	652	23	1	451	1	SORCS3	10	106401534	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	1290794	106401534	29133213	1404	6778										
SORCS3	22986	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	106737189	106737189	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	atcggctcaccttctatatcCagagcctgctctttcatccc	5	16	4	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SORCS3-99	NM_014978	exon4	c.C892A	p.Q298K	TATATCCAGAGCC	.	58	9	31	0	.	0	0	0	0	0	A	106737189	C	A	106737189	3	1	31	1	0	0	0	0	1	0	0	0	14967	595	21	3	906	3	SORCS3	10	106737189	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	335655	106737189	28797558	1405	6779										
SORCS3	22986	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr10	106970974	106970974	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cagcatccccatcaaaggacTgcagccttggtcaaagctac	8	14	2	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SORCS3-99	NM_014978	exon17	c.T2341A	p.C781S	AAGGACTGCAGCC	.	216	59	186	0	.	0	0	0	0	0	A	106970974	T	A	106970974	3	1	31	1	0	0	0	0	1	0	0	0	14967	1580	55	5	2407	5	SORCS3	10	106970974	Missense_Mutation	SNP	T	TCGA-OR-A5KB-01A-11D-A30A-10	233785	106970974	28563773	1406	6780										
SORCS1	114815	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr10	108338952	108338952	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gagtgactgactggactgatCatctcttgttctttctcatt	8	9	4	3	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SORCS1-153	NM_001206572	exon26	c.G3429T	p.M1143I	ACTGATCATCTCT	.	115	26	76	0	.	0	0	0	0	0	A	108338952	C	A	108338952	3	1	31	1	0	0	0	0	1	0	0	0	14965	826	29	3	315	3	SORCS1	10	108338952	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	1367978	108338952	27195795	1407	6781										
SORCS1	114815	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr10	108448031	108448031	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tctctgcctttgttatatgtGatgaaagtcttcacttggtt	8	7	3	2	rs145364719	alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SORCS1-153	NM_001206572	exon10	c.C1479G	p.I493M	ATATGTGATGAAA	.	189	26	146	0	G|1.000;A|0.000	0	0	0	0	0	C	108448031	G	C	108448031	3	2	31	1	0	0	0	0	1	0	0	0	14965	1280	45	3	2329	3	SORCS1	10	108448031	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	109079	108448031	27086716	1408	6782										
SORCS1	114815	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	108589374	108589374	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	acatagagatagctcaaaatGgttttcaaaccaactttatc	5	8	2	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SORCS1-153	NM_001206572	exon3	c.C684A	p.T228T	CAAAATGGTTTTC	.	160	17	108	0	.	0	0	0	0	0	T	108589374	G	T	108589374	2	4	31	1	0	0	0	0	0	0	0	1	14965	1335	47	3		3	SORCS1	10	108589374	Silent	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	141343	108589374	26945373	1409	6783										
SORCS1	114815	broad.mit.edu;bcgsc.ca	37	chr10	108923768	108923768	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gtggaccatggcttggttgtGtgctgagtctcccgtcagcg	15	10	2	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SORCS1-153	NM_001206572	exon1	c.C517T	p.H173Y	GGTTGTGTGCTGA	.	127	8	85	0	.	0	0	0	0	0	A	108923768	G	A	108923768	3	1	31	1	0	0	0	0	1	0	0	0	14965	1377	48	3	3327	3	SORCS1	10	108923768	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	334394	108923768	26610979	1410	6784										
ADRA2A	150	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr10	112838012	112838012	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	aaggcgccccaaaacctcttCctggtgtctctggcctcggc	10	16	2	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ADRA2A-90	NM_000681	exon1	c.C258T	p.F86F	CCTCTTCCTGGTG	.	239	79	128	0	.	0	0	0	0	0	T	112838012	C	T	112838012	2	4	31	1	0	0	0	0	0	0	0	1	337	854	30	3		3	ADRA2A	10	112838012	Silent	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	3914244	112838012	22696735	1411	6785										
ADRA2A	150	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr10	112838129	112838129	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gcttggtgcgagatctacctGgcgctcgacgtgctcttctg	13	12	3	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ADRA2A-90	NM_000681	exon1	c.G375T	p.L125L	CTACCTGGCGCTC	.	311	83	161	0	.	0	0	0	0	0	T	112838129	G	T	112838129	2	4	31	1	0	0	0	0	0	0	0	1	337	1335	47	3		3	ADRA2A	10	112838129	Silent	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	117	112838129	22696618	1412	6786										
TDRD1	56165	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr10	115991245	115991245	+	Frame_Shift_Del	DEL	A	A	-													0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tgattttttttctttttcagAaacagcatctcttggaggta					novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TDRD1-90	NM_198795	exon26	c.3539delA	p.K1180fs	TTTCAGAAACAGC	.	59	18	52	0	.	0	0	0	0	0	-	115991245	A	-	115991245	7	5	31	1	0	1	0	1	0	0	0	0	15767	260	9	0	3637	0	TDRD1	10	115991245	Frame_Shift_Del	DEL	A	TCGA-OR-A5KB-01A-11D-A30A-10	3153116	115991245	19543502	1413	6787	67	3								
TDRD1	56165	hgsc.bcm.edu	37	chr10	115991246	115991247	+	Frame_Shift_Del	DEL	AA	AA	-													0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gattttttttctttttcagaAacagcatctcttggaggtaa					novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	AA	AA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TDRD1-90	NM_198795	exon26	c.3540_3541del	p.1180_1181del	TTCAGAAACAGCA	.	59	0	52	0	.	0	0	0	0	0	-	115991247	AA	-	115991246	7	5	31	1	0	1	0	1	0	0	0	0	15767	28	1	0	3638	0	TDRD1	10	115991246	Frame_Shift_Del	DEL	AA	TCGA-OR-A5KB-01A-11D-A30A-10	1	115991246	19543501	1414	6788	67	3								
TDRD1	56165	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	chr10	115991247	115991247	+	Missense_Mutation	SNP	A	A	G													0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	attttttttctttttcagaaAcagcatctcttggaggtaaa					novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TDRD1-90	NM_198795	exon26	c.A3541G	p.T1181A	TCAGAAACAGCAT	.	59	17	52	0	.	0	0	0	0	0	G	115991247	A	G	115991247	3	3	31	1	0	0	0	0	1	0	0	0	15767	43	2	4	3639	4	TDRD1	10	115991247	Missense_Mutation	SNP	A	TCGA-OR-A5KB-01A-11D-A30A-10	1	115991247	19543500	1415	6789	67	3								
ABLIM1	3983	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr10	116201527	116201527	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cagggagagatgcagttttaGatgatggaatatgtgaagct	14	3	0	4	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ABLIM1-153	NM_002313	exon18	c.C1952T	p.S651F	GTTTTAGATGATG	.	163	39	90	0	.	0	0	0	0	0	A	116201527	G	A	116201527	3	1	31	1	0	0	0	0	1	0	0	0	94	942	33	3	404	3	ABLIM1	10	116201527	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	210280	116201527	19333220	1416	6790										
ABLIM1	3983	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr10	116444073	116444073	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gtagtctcccatggtgtgatGagggtccgtgagctcagtca	14	9	3	3	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ABLIM1-153	NM_001003407	exon1	c.C40T	p.H14Y	TGTGATGAGGGTC	.	275	63	138	0	.	0	0	0	0	0	A	116444073	G	A	116444073	3	1	31	1	0	0	0	0	1	0	0	0	94	1290	45	3	2540	3	ABLIM1	10	116444073	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	242546	116444073	19090674	1417	6791										
GFRA1	2674	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr10	118030372	118030372	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tgctccagtaaatgcgcaggCagttcttctccttcttcata	7	12	4	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GFRA1-93	NM_005264	exon3	c.G296T	p.C99F	CGCAGGCAGTTCT	.	152	37	83	0	.	0	0	0	0	0	A	118030372	C	A	118030372	3	1	31	1	0	0	0	0	1	0	0	0	6367	710	25	3	1137	3	GFRA1	10	118030372	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	1586299	118030372	17504375	1418	6792										
PNLIP	5406	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	118306857	118306857	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cttcagtgatgactccccatGgtcaggaattacggaaagac	10	10	2	3	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PNLIP-92	NM_000936	exon3	c.G98T	p.W33L	CCCCATGGTCAGG	.	161	21	104	0	.	0	0	0	0	0	T	118306857	G	T	118306857	3	4	31	1	0	0	0	0	1	0	0	0	12178	1357	47	3	104	3	PNLIP	10	118306857	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	276485	118306857	17227890	1419	6793										
PNLIP	5406	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr10	118315585	118315585	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gatagcatcgtcaaccctgaTggctttgctggattcccctg	10	12	1	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PNLIP-92	NM_000936	exon9	c.T885G	p.D295E	CCCTGATGGCTTT	.	184	45	104	0	.	0	0	0	0	0	G	118315585	T	G	118315585	3	3	31	1	0	0	0	0	1	0	0	0	12178	1461	51	5	915	5	PNLIP	10	118315585	Missense_Mutation	SNP	T	TCGA-OR-A5KB-01A-11D-A30A-10	8728	118315585	17219162	1420	6794										
PNLIPRP1	5407	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr10	118350667	118350667	+	Frame_Shift_Del	DEL	T	T	-													0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gatcttctggacaatcacacTtttcctgctgggagcagcca					novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PNLIPRP1-154	NM_006229	exon2	c.26delT	p.L9fs	TCACACTTTTCCT	.	69	19	38	0	.	0	0	0	0	0	-	118350667	T	-	118350667	7	5	31	1	0	1	0	1	0	0	0	0	12179	1609	56	0	28	0	PNLIPRP1	10	118350667	Frame_Shift_Del	DEL	T	TCGA-OR-A5KB-01A-11D-A30A-10	35082	118350667	17184080	1421	6795										
PNLIPRP2	5408	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	118383552	118383552	+	RNA	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	aaaattacttccctggtcccCcgaggacattgacacccgct	7	15	0	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PNLIPRP2-67	.	.	.	.	GGTCCCCCGAGGA	.	209	51	111	1	.	0	0	0	0	0	A	118383552	C	A	118383552	1	1	31	0	1	0	0	0	0	0	0	0	12180	623	22	3		3	PNLIPRP2	10	118383552	RNA	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	32885	118383552	17151195	1422	6796										
C10orf82	143379	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	118424447	118424447	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ctcctggagaggtttctttaCatatttgcattctgtaaaaa	7	7	2	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	C10orf82-90	NM_144661	exon4	c.G286C	p.V96L	TCTTTACATATTT	.	46	7	32	0	.	0	0	0	0	0	G	118424447	C	G	118424447	3	3	31	1	0	0	0	0	1	0	0	0	1624	478	17	3	186	3	C10orf82	10	118424447	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	40895	118424447	17110300	1423	6797										
C10orf82	143379	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr10	118425218	118425218	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tttcggggcagtggccactgCgcagcacaattcccgcagct	12	14	0	0	rs144390968	alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	C10orf82-90	NM_144661	exon3	c.G175C	p.A59P	CCACTGCGCAGCA	.	260	35	149	0	C|1.000;T|0.000	0	0	0	0	0	G	118425218	C	G	118425218	3	3	31	1	0	0	0	0	1	0	0	0	1624	768	27	2	301	2	C10orf82	10	118425218	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	771	118425218	17109529	1424	6798										
VAX1	11023	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr10	118893665	118893665	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	taacggggcggaggacaggcGgctggcgacggagccgagca	20	10	0	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	VAX1-92	NM_001112704	exon3	c.C859A	p.R287S	ACAGGCGGCTGGC	.	62	16	18	0	.	0	0	0	0	0	T	118893665	G	T	118893665	3	4	31	1	0	0	0	0	1	0	0	0	17172	1116	39	2	289	2	VAX1	10	118893665	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	468447	118893665	16641082	1425	6799										
VAX1	11023	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	118896161	118896161	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ggatgatctctcggatggacCccttggcatctggggaaggg	16	9	2	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	VAX1-92	NM_001112704	exon2	c.G251T	p.G84V	ATGGACCCCTTGG	.	325	74	207	2	.	0	0	0	0	0	A	118896161	C	A	118896161	3	1	31	1	0	0	0	0	1	0	0	0	17172	623	22	3	901	3	VAX1	10	118896161	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	2496	118896161	16638586	1426	6800										
VAX1	11023	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr10	118897336	118897336	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cccatccctacctcggaccaGgatccggcggcagtaatccg	10	17	0	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	VAX1-92	NM_001112704	exon1	c.C232A	p.L78M	GGACCAGGATCCG	.	146	58	50	0	.	0	0	0	0	0	T	118897336	G	T	118897336	3	4	31	1	0	0	0	0	1	0	0	0	17172	991	35	3	924	3	VAX1	10	118897336	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	1175	118897336	16637411	1427	6801										
KCNK18	338567	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr10	118969655	118969655	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gggatactgttttagaacacCctaacttcttcctgttcttc	6	11	2	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	KCNK18-91	NM_181840	exon3	c.C1000A	p.P334T	GAACACCCTAACT	.	316	105	199	0	.	0	0	0	0	0	A	118969655	C	A	118969655	3	1	31	1	0	0	0	0	1	0	0	0	8086	623	22	3	1010	3	KCNK18	10	118969655	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	72319	118969655	16565092	1428	6802										
SLC18A2	6571	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr10	119003663	119003663	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gacctgacacttcatcagacCgccacacagcacatggtgac	8	15	2	3	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SLC18A2-90	NM_003054	exon3	c.C303A	p.T101T	TCAGACCGCCACA	.	231	41	135	0	.	0	0	0	0	0	A	119003663	C	A	119003663	2	1	31	1	0	0	0	0	0	0	0	1	14461	639	23	2		2	SLC18A2	10	119003663	Silent	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	34008	119003663	16531084	1429	6803										
EMX2	2018	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr10	119305183	119305183	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	agtttccttttgcacaacgcGctggcccgaaagcccaagcg	10	14	0	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	EMX2-90	NM_004098	exon2	c.G447T	p.A149A	CAACGCGCTGGCC	.	606	223	410	1	.	0	0	0	0	0	T	119305183	G	T	119305183	2	4	31	1	0	0	0	0	0	0	0	1	5121	1074	38	2		2	EMX2	10	119305183	Silent	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	301520	119305183	16229564	1430	6804										
PRLHR	2834	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr10	120353662	120353662	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	catcagatgaccacgctgacGgtcatattctggccatgggg	12	11	3	3	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PRLHR-90	NM_004248	exon2	c.C1095G	p.T365T	GCTGACGGTCATA	.	331	53	161	0	.	0	0	0	0	0	C	120353662	G	C	120353662	2	2	31	1	0	0	0	0	0	0	0	1	12562	1103	39	2		2	PRLHR	10	120353662	Silent	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	1048479	120353662	15181085	1431	6805										
PRLHR	2834	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr10	120354576	120354576	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gtagagcagcacgatcagccCcttcagctgatgcaccagct	10	14	2	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PRLHR-90	NM_004248	exon2	c.G181T	p.G61W	TCAGCCCCTTCAG	.	372	97	80	0	.	0	0	0	0	0	A	120354576	C	A	120354576	3	1	31	1	0	0	0	0	1	0	0	0	12562	623	22	3	935	3	PRLHR	10	120354576	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	914	120354576	15180171	1432	6806										
SFXN4	119559	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr10	120921874	120921874	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tttggtccgccgaggcagggCtggaaacatcttcatttgtg	13	9	2	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SFXN4-91	NM_213649	exon3	c.G230A	p.S77N	GCAGGGCTGGAAA	.	329	122	195	0	.	0	0	0	0	0	T	120921874	C	T	120921874	3	4	31	1	0	0	0	0	1	0	0	0	14232	797	28	3	831	3	SFXN4	10	120921874	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	567298	120921874	14612873	1433	6807										
SEC23IP	11196	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr10	121685604	121685604	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	acttctacaaaaggacaagaGcaaagtgcccagaagactaa	8	9	1	3	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SEC23IP-93	NM_007190	exon13	c.G2178T	p.E726D	ACAAGAGCAAAGT	.	168	68	134	0	.	0	0	0	0	0	T	121685604	G	T	121685604	3	4	31	1	0	0	0	0	1	0	0	0	14028	962	34	3	2228	3	SEC23IP	10	121685604	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	763730	121685604	13849143	1434	6808										
TACC2	10579	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr10	124008228	124008228	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gttctggagaaggagcaagcCctggccgacctgaactccgt	13	12	1	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TACC2-296	NM_206862	exon20	c.C8463T	p.A2821A	GCAAGCCCTGGCC	.	181	33	110	0	.	0	0	0	0	0	T	124008228	C	T	124008228	2	4	31	1	0	0	0	0	0	0	0	1	15539	610	22	3		3	TACC2	10	124008228	Silent	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	2322624	124008228	11526519	1435	6809										
DMBT1	1755	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr10	124402801	124402801	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cctcttcccgctgctaccgaGgctgtgtgttgaggtcgaag	13	12	1	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DMBT1-494	NM_007329	exon53	c.G7129C	p.G2377R	TACCGAGGCTGTG	.	570	143	304	2	.	0	0	0	0	0	C	124402801	G	C	124402801	3	2	31	1	0	0	0	0	1	0	0	0	4588	1000	35	3	7339	3	DMBT1	10	124402801	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	394573	124402801	11131946	1436	6810										
HMX2	3167	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr10	124907940	124907941	+	Missense_Mutation	DNP	GG	GG	TT													0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	aggggtgtccggcggccggtGgcgtctccagcttcaccatc					novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	GG	GG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	HMX2-90	NM_005519	exon1	c.G47T	p.G16F	CCGGTGGCGTCTC	.	226	13	102	0	.	0	0	0	0	0	TT	124907941	GG	TT	124907940	3	4	31	1	0	0	0	0	1	0	0	0	7268	1348	47	3	48	3	HMX2	10	124907940	Missense_Mutation	DNP	GG	TCGA-OR-A5KB-01A-11D-A30A-10	505139	124907940	10626807	1437	6811										
HMX2	3167	broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr10	124909282	124909282	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	aagaagaagacgcgcaccgtCttttcgcgcagccaggtgta	12	11	1	3	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	HMX2-90	NM_005519	exon2	c.C465A	p.V155V	CACCGTCTTTTCG	.	196	29	98	1	.	0	0	0	0	0	A	124909282	C	A	124909282	2	1	31	1	0	0	0	0	0	0	0	1	7268	900	32	3		3	HMX2	10	124909282	Silent	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	1342	124909282	10625465	1438	6812										
CPXM2	119587	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	125530486	125530486	+	Missense_Mutation	SNP	C	C	A													0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cacagcatacagcttcaggcCctggtggctttttccaatgt					novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CPXM2-92	NM_198148	exon8	c.G1048T	p.G350C	TCAGGCCCTGGTG	.	247	85	146	2	.	0	0	0	0	0	A	125530486	C	A	125530486	3	1	31	1	0	0	0	0	1	0	0	0	3844	623	22	3	1250	3	CPXM2	10	125530486	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	621204	125530486	10004261	1439	6813	68	2								
CPXM2	119587	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	125530489	125530489	+	Missense_Mutation	SNP	G	G	T													0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	agcatacagcttcaggccctGgtggctttttccaatgttgt					novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CPXM2-92	NM_198148	exon8	c.C1045A	p.Q349K	GGCCCTGGTGGCT	.	246	80	154	3	.	0	0	0	0	0	T	125530489	G	T	125530489	3	4	31	1	0	0	0	0	1	0	0	0	3844	1357	47	3	1253	3	CPXM2	10	125530489	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	3	125530489	10004258	1440	6814	68	2								
CPXM2	119587	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	125639753	125639754	+	Missense_Mutation	DNP	CG	CG	AC													0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tgacatcttcacgggccacaCggacactgtgatcatcgttg					novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	CG	CG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CPXM2-92	NM_198148	exon2	c.C376G	p.R126V	CCACACGGACACT	.	138	0	91	0	.	0	0	0	0	0	AC	125639754	CG	AC	125639753	3	1	31	1	0	0	0	0	1	0	0	0	3844	536	19	2	1945	2	CPXM2	10	125639753	Missense_Mutation	DNP	CG	TCGA-OR-A5KB-01A-11D-A30A-10	109264	125639753	9894994	1441	6815										
FANK1	92565	broad.mit.edu	37	chr10	127585214	127585214	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gccggggagcagccgaccatGgagccccagagtaagggagg	18	11	0	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FANK1-91	NM_145235	exon1	c.G3C	p.M1I	GACCATGGAGCCC	.	218	10	12	0	.	0	0	0	0	0	C	127585214	G	C	127585214	3	2	31	1	0	0	0	0	1	0	0	0	5691	1348	47	3	5	3	FANK1	10	127585214	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	1945461	127585214	7949533	1442	6816										
ADAM12	8038	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr10	127806696	127806696	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tgatccacatgatccccggaCgcttttcagcttcttcgctg	8	14	2	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ADAM12-716	NM_021641	exon6	c.G523T	p.V175F	CCCGGACGCTTTT	.	235	54	135	0	.	0	0	0	0	0	A	127806696	C	A	127806696	3	1	31	1	0	0	0	0	1	0	0	0	236	536	19	2	2386	2	ADAM12	10	127806696	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	221482	127806696	7728051	1443	6817										
C10orf90	118611	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	128147643	128147643	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ggaatcgtgaactgcttcttGctggtgcggatgggaaggag	17	6	1	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	C10orf90-92	NM_001004298	exon6	c.C1863A	p.S621R	CTTCTTGCTGGTG	.	200	64	100	1	.	0	0	0	0	0	T	128147643	G	T	128147643	3	4	31	1	0	0	0	0	1	0	0	0	1627	1310	46	3	252	3	C10orf90	10	128147643	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	340947	128147643	7387104	1444	6818										
C10orf90	118611	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr10	128153420	128153420	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cagaaaggtctctagacagaCagtcatcgcttggagagcta	11	9	2	4	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	C10orf90-92	NM_001004298	exon4	c.G1379C	p.C460S	GACAGACAGTCAT	.	279	25	164	0	.	0	0	0	0	0	G	128153420	C	G	128153420	3	3	31	1	0	0	0	0	1	0	0	0	1627	478	17	3	744	3	C10orf90	10	128153420	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	5777	128153420	7381327	1445	6819										
MGMT	4255	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr10	131565118	131565118	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ccgtgggcaactactccggaGgactggccgtgaaggaatgg	16	10	0	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MGMT-1108	NM_002412	exon5	c.G574C	p.G192R	TCCGGAGGACTGG	.	338	41	220	0	.	0	0	0	0	0	C	131565118	G	C	131565118	3	2	31	1	0	0	0	0	1	0	0	0	9585	1001	35	3	592	3	MGMT	10	131565118	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	3411698	131565118	3969629	1446	6820										
EBF3	253738	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr10	131638572	131638572	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	agaggcttggggccggaccaCgggcgcgaaggcgctcttct	17	12	2	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	EBF3-91	NM_001005463	exon15	c.G1561T	p.V521L	GGACCACGGGCGC	.	207	30	125	0	.	0	0	0	0	0	A	131638572	C	A	131638572	3	1	31	1	0	0	0	0	1	0	0	0	4893	536	19	2	102	2	EBF3	10	131638572	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	73454	131638572	3896175	1447	6821										
JAKMIP3	282973	ucsc.edu;bcgsc.ca	37	chr10	133931066	133931066	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	aagaaggagtgcgagcgggaGatccgcaggctggtacgtgg	19	7	0	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	JAKMIP3-23	NM_001105521	exon2	c.G621T	p.E207D	GCGGGAGATCCGC	.	233	86	114	2	.	0	0	0	0	0	T	133931066	G	T	133931066	3	4	31	1	0	0	0	0	1	0	0	0	7963	933	33	3	627	3	JAKMIP3	10	133931066	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	2292494	133931066	1603681	1448	6822										
PWWP2B	170394	hgsc.bcm.edu	37	chr10	134218296	134218296	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ttcagccccccgagaccaccCgccccgagccacccccgccc	7	26	1	1	rs10747057	byfrequency	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PWWP2B-90	NM_001098637	exon2	c.C292G	p.R98G	ACCACCCGCCCCG	.	21	14	0	0	C|0.431;G|0.569	0	0	0	0	0	G	134218296	C	G	134218296	3	3	31	1	0	0	0	0	1	0	0	0	12881	652	23	2	298	2	PWWP2B	10	134218296	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	287230	134218296	1316451	1449	6823										
PWWP2B	170394	hgsc.bcm.edu	37	chr10	134219066	134219066	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gtgtaccgggccgagctggtGggggagctgaacgggtacct	19	9	0	1	rs76595411	byfrequency	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PWWP2B-90	NM_001098637	exon2	c.G1062C	p.V354V	GCTGGTGGGGGAG	.	40	25	3	0	G|0.955;C|0.045	0	0	0	0	0	C	134219066	G	C	134219066	2	2	31	1	0	0	0	0	0	0	0	1	12881	1335	47	3		3	PWWP2B	10	134219066	Silent	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	770	134219066	1315681	1450	6824										
TUBGCP2	10844	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	135106162	135106162	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gcaggctcagcgtggaccccCcaagacattcgcctttgtcc	10	16	1	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TUBGCP2-90	NM_001256617	exon9	c.G1139T	p.G380V	GACCCCCCAAGAC	.	226	68	113	2	.	0	0	0	0	0	A	135106162	C	A	135106162	3	1	31	1	0	0	0	0	1	0	0	0	16804	623	22	3	1697	3	TUBGCP2	10	135106162	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	887096	135106162	428585	1451	6825										
ZNF511	118472	hgsc.bcm.edu	37	chr10	135122507	135122507	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gggcccggggcggcggagccGctgcctgtagagcgggatcc	20	13	0	1	rs3008357		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ZNF511-90	NM_145806	exon1	c.G60A	p.P20P	GGAGCCGCTGCCT	.	39	15	0	0	G|0.816;A|0.184	0	0	0	0	0	A	135122507	G	A	135122507	2	1	31	1	0	0	0	0	0	0	0	1	17992	1074	38	1		1	ZNF511	10	135122507	Silent	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	16345	135122507	412240	1452	6826										
ECHS1	1892	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr10	135179540	135179540	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	agaattgctggcaattttttCtgcacactggatggcttctt	9	8	2	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ECHS1-90	NM_004092	exon6	c.G679T	p.E227X	TTTTTTCTGCACA	.	127	28	78	0	.	0	0	0	0	0	A	135179540	C	A	135179540	4	1	31	1	0	0	0	0	0	1	0	0	4907	922	32	3	205	3	ECHS1	10	135179540	Nonsense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	57033	135179540	355207	1453	6827										
MTG1	92170	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr10	135209699	135209699	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ggccgcaaccctctgtttcaGgaaacccttgggcttaagcc	10	14	2	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MTG1-91	NM_138384	exon3	c.G210T	p.Q70H	GTTTCAGGAAACC	.	146	24	89	0	.	0	0	0	0	0	T	135209699	G	T	135209699	3	4	31	1	0	0	0	0	1	0	0	0	9954	991	35	3	220	3	MTG1	10	135209699	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	30159	135209699	325048	1454	6828										
ANO9	338440	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	418479	418479	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	agcctctgccttccatgccaCatcttctcacgcagcctctg	6	18	4	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ANO9-227	NM_001012302	exon23	c.G2241A	p.M747I	ATGCCACATCTTC	.	126	60	156	1	.	0	0	0	0	0	T	418479	C	T	418479	3	4	31	1	0	0	0	0	1	0	0	0	704	478	17	3	111	3	ANO9	11	418479	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10		418479	134588037	1455	6829										
PHRF1	57661	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	607214	607214	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	agcacagggctcagctgtcaAggcaggtcccgcacccccgc	12	17	2	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PHRF1-22	NM_020901	exon14	c.A1755T	p.Q585H	CTGTCAAGGCAGG	.	45	32	21	0	.	0	0	0	0	0	T	607214	A	T	607214	3	4	31	1	0	0	0	0	1	0	0	0	11890	69	3	5	1805	5	PHRF1	11	607214	Missense_Mutation	SNP	A	TCGA-OR-A5KB-01A-11D-A30A-10	188735	607214	134399302	1456	6830										
EPS8L2	64787	bcgsc.ca	37	chr11	721570	721570	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cccctctgaccccagcaaatCctcaactgcgccctggacga	7	19	2	1	rs7635	bycluster;byfrequency;by1000genomes	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	EPS8L2-91	NM_022772	exon10	c.C774T	p.I258I	GCAAATCCTCAAC	.	175	6	162	1	C|0.686;T|0.314	0	0	0	0	0	T	721570	C	T	721570	2	4	31	1	0	0	0	0	0	0	0	1	5209	845	30	3		3	EPS8L2	11	721570	Silent	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	114356	721570	134284946	1457	6831										
MUC5B	727897	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr11	1269567	1269567	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	accacacccacggccaccatGtccacagccacaccctcctc	4	23	0	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_002458	exon31	c.G11457T	p.M3819I	CACCATGTCCACA	.	599	261	740	1	.	0	0	0	0	0	T	1269567	G	T	1269567	3	4	31	1	0	0	0	0	1	0	0	0	10007	1377	48	3	11588	3	MUC5B	11	1269567	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	547997	1269567	133736949	1458	6832										
BRSK2	9024	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr11	1464775	1464775	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ctgctggagaaggtgaagcgGggcgtgttccacatgccgca	16	10	0	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	BRSK2-333	NM_001256630	exon8	c.G828T	p.R276R	GAAGCGGGGCGTG	.	62	34	51	0	.	0	0	0	0	0	T	1464775	G	T	1464775	2	4	31	1	0	0	0	0	0	0	0	1	1527	1219	43	3		3	BRSK2	11	1464775	Silent	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	195208	1464775	133541741	1459	6833										
KRTAP5-1	387264	broad.mit.edu	37	chr11	1606164	1606164	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	acaagagccacagcccccctTggagcccccacaggagccac	9	19	0	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	KRTAP5-1-44	NM_001005922	exon1	c.A316C	p.K106Q	CCCCCTTGGAGCC	.	86	7	104	2	.	0	0	0	0	0	G	1606164	T	G	1606164	3	3	31	1	0	0	0	0	1	0	0	0	8580	1821	63	5	524	5	KRTAP5-1	11	1606164	Missense_Mutation	SNP	T	TCGA-OR-A5KB-01A-11D-A30A-10	141389	1606164	133400352	1460	6834										
C11orf40	143501	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	4592668	4592668	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ctacatcagggcagggacttCaagtagttcacatccacatg	9	11	3	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	C11orf40-92	NM_144663	exon4	c.G639C	p.L213F	GGACTTCAAGTAG	.	37	22	70	0	.	0	0	0	0	0	G	4592668	C	G	4592668	3	3	31	1	0	0	0	0	1	0	0	0	1643	825	29	3	17	3	C11orf40	11	4592668	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	2986504	4592668	130413848	1461	6835										
OR51A4	401666	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	4968178	4968178	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tgcaaggagggctctgtcttGatgataaaaagaatggtgcc	13	6	2	3	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OR51A4-71	NM_001005329	exon1	c.C153A	p.I51I	TGTCTTGATGATA	.	510	300	794	1	.	0	0	0	0	0	T	4968178	G	T	4968178	2	4	31	1	0	0	0	0	0	0	0	1	11116	1280	45	3		3	OR51A4	11	4968178	Silent	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	375510	4968178	130038338	1462	6836										
OR52E8	390079	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	5878658	5878658	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	atatttctttggtattgaacCagaagatgcccaacattttg	7	7	1	3	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OR52E8-70	NM_001005168	exon1	c.G275C	p.W92S	TTGAACCAGAAGA	.	113	62	158	1	.	0	0	0	0	0	G	5878658	C	G	5878658	3	3	31	1	0	0	0	0	1	0	0	0	11147	595	21	3	680	3	OR52E8	11	5878658	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	910480	5878658	129127858	1463	6837										
FAM160A2	84067	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	6245247	6245247	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ttgctcagcccgccgttcctCgaccccatccccaagctcat	6	20	2	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FAM160A2-92	NM_032127	exon3	c.G370T	p.E124X	GTTCCTCGACCCC	.	73	36	101	0	.	0	0	0	0	0	A	6245247	C	A	6245247	4	1	31	1	0	0	0	0	0	1	0	0	5485	893	31	2	2630	2	FAM160A2	11	6245247	Nonsense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	366589	6245247	128761269	1464	6838										
DCHS1	8642	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	6661671	6661671	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	aaagtcaccatcatctgggtCtgacacagagatgcgagcaa	10	10	4	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DCHS1-73	NM_003737	exon2	c.G1174T	p.D392Y	CTGGGTCTGACAC	.	69	33	134	0	.	0	0	0	0	0	A	6661671	C	A	6661671	3	1	31	1	0	0	0	0	1	0	0	0	4293	913	32	3	8802	3	DCHS1	11	6661671	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	416424	6661671	128344845	1465	6839										
OR2D2	120776	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	6913108	6913108	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	agaatcagaaaaacaggtatGaggagaatcacaacccccat	8	9	2	4	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OR2D2-501	NM_003700	exon1	c.C624A	p.L208L	AGGTATGAGGAGA	.	68	37	92	0	.	0	0	0	0	0	T	6913108	G	T	6913108	2	4	31	1	0	0	0	0	0	0	0	1	11023	1277	45	3		3	OR2D2	11	6913108	Silent	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	251437	6913108	128093408	1466	6840										
OR2D3	120775	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	6942958	6942958	+	Silent	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	aatattatctccactgttatCcagatgcagtctggggaagg	10	8	2	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OR2D3-68	NM_001004684	exon1	c.C726A	p.I242I	TGTTATCCAGATG	.	146	75	213	0	.	0	0	0	0	0	A	6942958	C	A	6942958	2	1	31	1	0	0	0	0	0	0	0	1	11024	845	30	3		3	OR2D3	11	6942958	Silent	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	29850	6942958	128063558	1467	6841										
OR5P2	120065	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	7817640	7817640	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gttcctgaggctgtagatcaGggggttcaacatgggaatca	14	7	3	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OR5P2-496	NM_153444	exon1	c.C850A	p.L284M	AGATCAGGGGGTT	.	206	119	224	0	.	0	0	0	0	0	T	7817640	G	T	7817640	3	4	31	1	0	0	0	0	1	0	0	0	11207	991	35	3	122	3	OR5P2	11	7817640	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	874682	7817640	127188876	1468	6842										
NLRP10	338322	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr11	7981838	7981839	+	Frame_Shift_Ins	INS	-	-	T													0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	aggaaagcggcaagcctgggINSgccatctaaattatgtttcc					novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	NLRP10-209	NM_176821	exon2	c.1321_1322insA	p.P441fs	GCCTGGGGCCATC	.	54	30	66	0	.	0	0	0	0	0	T	7981839	-	T	7981838	7	5	31	1	0	1	1	0	0	0	0	0	10501	1232	43	0	650	0	NLRP10	11	7981838	Frame_Shift_Ins	INS	-	TCGA-OR-A5KB-01A-11D-A30A-10	164198	7981838	127024678	1469	6843										
SBF2	81846	bcgsc.ca	37	chr11	10019853	10019853	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tctgatgtagaagtggttctGggagggaagagaggtgaata	17	2	2	4	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SBF2-93	NM_030962	exon9	c.C935A	p.P312Q	GGTTCTGGGAGGG	.	53	4	72	0	.	0	0	0	0	0	T	10019853	G	T	10019853	3	4	31	1	0	0	0	0	1	0	0	0	13894	1348	47	3	4742	3	SBF2	11	10019853	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	2038015	10019853	124986663	1470	6844										
ADM	133	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	10328160	10328160	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	acacggggctccagccccccCgagtggaagtgctccccact	11	18	0	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ADM-514	NM_001124	exon4	c.C530A	p.P177Q	CCCCCCCGAGTGG	.	118	70	96	0	.	0	0	0	0	0	A	10328160	C	A	10328160	3	1	31	1	0	0	0	0	1	0	0	0	321	652	23	2	540	2	ADM	11	10328160	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	308307	10328160	124678356	1471	6845										
SPON1	10418	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	14063180	14063180	+	RNA	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ttggatagcaccaccagcggGaacaggctgcgtgattctga	13	10	1	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SPON1-1	.	.	.	.	CAGCGGGAACAGG	.	57	30	99	1	.	0	0	0	0	0	A	14063180	G	A	14063180	1	1	31	0	1	0	0	0	0	0	0	0	15119	1174	41	3		3	SPON1	11	14063180	RNA	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	3735020	14063180	120943336	1472	6846										
INSC	387755	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	15197588	15197588	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	atgcccgctccatggtcagcGagtacagtgctgtcagcagg	13	12	2	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	INSC-94	NM_001031853	exon3	c.G499T	p.E167X	GTCAGCGAGTACA	.	146	59	187	0	.	0	0	0	0	0	T	15197588	G	T	15197588	4	4	31	1	0	0	0	0	0	1	0	0	7785	1059	37	2	509	2	INSC	11	15197588	Nonsense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	1134408	15197588	119808928	1473	6847										
SOX6	55553	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	chr11	16256218	16256218	+	Splice_Site	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tttttccatgcaggaggaatCtattaaaatacaaaagtaag	7	5	1	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SOX6-93	NM_001145811	exon5	c.446-1G>T	.	AGGAATCTATTAA	.	11	6	12	0	.	0	0	0	0	0	A	16256218	C	A	16256218	5	1	31	1	0	0	0	0	0	0	1	0	14990	927	32	3	2135	3	SOX6	11	16256218	Splice_Site	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	1058630	16256218	118750298	1474	6848										
USH1C	10083	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	17552712	17552712	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tttgctcacctggagcccgaCgctgtctgcctgaccgcctt	10	16	2	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	USH1C-91	NM_005709	exon4	c.G376T	p.V126F	GCCCGACGCTGTC	.	128	73	199	0	.	0	0	0	0	0	A	17552712	C	A	17552712	3	1	31	1	0	0	0	0	1	0	0	0	17072	536	19	2	2497	2	USH1C	11	17552712	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	1296494	17552712	117453804	1475	6849										
NELL1	4745	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	21596527	21596527	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ttgatgtacagaatggaagaGtctgttgttctgtggatttt	12	3	2	3	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	NELL1-155	NM_006157	exon20	c.G2392T	p.V798F	GGAAGAGTCTGTT	.	58	26	105	0	.	0	0	0	0	0	T	21596527	G	T	21596527	3	4	31	1	0	0	0	0	1	0	0	0	10362	1029	36	3	2470	3	NELL1	11	21596527	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	4043815	21596527	113409989	1476	6850										
SLC17A6	57084	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	22363120	22363120	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gggagacaatcgagctgacgGaggatgggaagcccctagag	17	8	0	3	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SLC17A6-580	NM_020346	exon2	c.G133C	p.E45Q	CTGACGGAGGATG	.	57	33	102	0	.	0	0	0	0	0	C	22363120	G	C	22363120	3	2	31	1	0	0	0	0	1	0	0	0	14456	1175	41	3	139	3	SLC17A6	11	22363120	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	766593	22363120	112643396	1477	6851										
SLC17A6	57084	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	22399006	22399006	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tgccctagtccactatggtgGagttatattttatgcaatat	8	7	0	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SLC17A6-580	NM_020346	exon12	c.G1469T	p.G490V	ATGGTGGAGTTAT	.	88	51	149	0	.	0	0	0	0	0	T	22399006	G	T	22399006	3	4	31	1	0	0	0	0	1	0	0	0	14456	1174	41	3	1515	3	SLC17A6	11	22399006	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	35886	22399006	112607510	1478	6852										
KCNA4	3739	hgsc.bcm.edu	37	chr11	30034154	30034154	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tcccgctcccgggcccgggcCtgggcagcataaccataagg	13	16	0	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	KCNA4-517	NM_002233	exon2	c.G72T	p.Q24H	CCGGGCCTGGGCA	.	19	6	15	0	.	0	0	0	0	0	A	30034154	C	A	30034154	3	1	31	1	0	0	0	0	1	0	0	0	8026	680	24	3	1893	3	KCNA4	11	30034154	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	7635148	30034154	104972362	1479	6853										
WT1	7490	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	32414240	32414240	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ctcctttggtgtcttttgagCtggtctgaacgagaaaacct	10	9	2	3	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	WT1-6891	NM_024424	exon8	c.G1311T	p.Q437H	TTTGAGCTGGTCT	.	142	80	185	0	.	0	0	0	0	0	A	32414240	C	A	32414240	3	1	31	1	0	0	0	0	1	0	0	0	17446	796	28	3	254	3	WT1	11	32414240	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	2380086	32414240	102592276	1480	6854										
CCDC73	493860	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	32635948	32635948	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tatatttctgacatggaacaGgatttttttttatatctaga	6	4	2	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CCDC73-91	NM_001008391	exon16	c.T1916A	p.I639K	GGAACAGGATTTT	.	38	21	52	0	.	0	0	0	0	0	T	32635948	G	T	32635948	3	4	31	1	0	0	0	0	1	0	0	0	2852	1000	35	3	1335	3	CCDC73	11	32635948	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	221708	32635948	102370568	1481	6855										
QSER1	79832	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	32956724	32956724	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	aatgcctaacaggactagacGgccagggacccagatggttc	12	11	0	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	QSER1-95	NM_001076786	exon4	c.G3533T	p.R1178L	CTAGACGGCCAGG	.	68	35	131	0	.	0	0	0	0	0	T	32956724	G	T	32956724	3	4	31	1	0	0	0	0	1	0	0	0	12917	1116	39	2	3539	2	QSER1	11	32956724	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	320776	32956724	102049792	1482	6856										
PAMR1	25891	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	35453941	35453941	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	caatccagtctttaaaaggcAgcaccttggtgaaggcagtg	11	9	1	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PAMR1-70	NM_015430	exon12	c.T2177G	p.L726R	AAAGGCAGCACCT	.	45	21	63	1	.	0	0	0	0	0	C	35453941	A	C	35453941	3	2	31	1	0	0	0	0	1	0	0	0	11442	188	7	5	40	5	PAMR1	11	35453941	Missense_Mutation	SNP	A	TCGA-OR-A5KB-01A-11D-A30A-10	2497217	35453941	99552575	1483	6857										
PAMR1	25891	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	35457622	35457622	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	aagggctggcttcttggtagGggcactctgcagtttctgct	14	9	3	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PAMR1-70	NM_015430	exon10	c.C1213A	p.P405T	TGGTAGGGGCACT	.	255	142	308	0	.	0	0	0	0	0	T	35457622	G	T	35457622	3	4	31	1	0	0	0	0	1	0	0	0	11442	1232	43	3	1012	3	PAMR1	11	35457622	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	3681	35457622	99548894	1484	6858										
RAG1	5896	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	36596616	36596616	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tgagatcccaagaccttgatGattacctgaatggccccttc	8	12	0	5	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	RAG1-230	NM_000448	exon2	c.G1762T	p.D588Y	CTTGATGATTACC	.	136	75	198	1	.	0	0	0	0	0	T	36596616	G	T	36596616	3	4	31	1	0	0	0	0	1	0	0	0	13038	1290	45	3	1764	3	RAG1	11	36596616	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	1138994	36596616	98409900	1485	6859										
LRRC4C	57689	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	40137767	40137767	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	agccagcagcaccacaagcaGggggtcaaatagggccctgt	13	12	1	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	LRRC4C-521	NM_001258419	exon7	c.C76A	p.L26M	CAAGCAGGGGGTC	.	136	69	171	1	.	0	0	0	0	0	T	40137767	G	T	40137767	3	4	31	1	0	0	0	0	1	0	0	0	9035	991	35	3	1850	3	LRRC4C	11	40137767	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	3541151	40137767	94868749	1486	6860										
LRP4	4038	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	46880716	46880716	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ggcctggatggacaccgtgtCtgtcttcatgcatacatgat	11	10	3	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	LRP4-94	NM_002334	exon38	c.G5536T	p.D1846Y	CCGTGTCTGTCTT	.	87	27	107	0	.	0	0	0	0	0	A	46880716	C	A	46880716	3	1	31	1	0	0	0	0	1	0	0	0	8986	913	32	3	185	3	LRP4	11	46880716	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	6742949	46880716	88125800	1487	6861										
OR4S1	256148	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	48328090	48328090	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tcttttctgcccacttctttGgtggcactgagatcttcctc	7	13	4	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OR4S1-69	NM_001004725	exon1	c.G316C	p.G106R	TTCTTTGGTGGCA	.	84	52	116	0	.	0	0	0	0	0	C	48328090	G	C	48328090	3	2	31	1	0	0	0	0	1	0	0	0	11111	1348	47	3	318	3	OR4S1	11	48328090	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	1447374	48328090	86678426	1488	6862										
FOLH1	2346	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr11	49195014	49195014	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tgagtcccggtgacctcccaGaatgacatatctgtctagaa	9	11	2	5	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FOLH1-579	NM_004476	exon10	c.C1120T	p.L374L	CTCCCAGAATGAC	.	80	38	117	0	.	0	0	0	0	0	A	49195014	G	A	49195014	2	1	31	1	0	0	0	0	0	0	0	1	5998	933	33	3		3	FOLH1	11	49195014	Silent	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	866924	49195014	85811502	1489	6863										
OR4C46	119749	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	51515827	51515827	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	atgtgtgatctgaaccctttGctcaacctcgcctgcactga	8	13	2	3	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OR4C46-69	NM_001004703	exon1	c.G546T	p.L182F	CCCTTTGCTCAAC	.	103	54	124	0	.	0	0	0	0	0	T	51515827	G	T	51515827	3	4	31	1	0	0	0	0	1	0	0	0	11080	1310	46	3	548	3	OR4C46	11	51515827	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	2320813	51515827	83490689	1490	6864										
OR4C46	119749	ucsc.edu;bcgsc.ca	37	chr11	51515989	51515989	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gcaaggcacaaagccctctcCacctgtgtctcccacatcac	6	18	3	0	rs141793341	bycluster;byfrequency;by1000genomes	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OR4C46-69	NM_001004703	exon1	c.C708T	p.S236S	CCTCTCCACCTGT	.	114	33	143	0	C|0.991;T|0.009	0	0	0	0	0	T	51515989	C	T	51515989	2	4	31	1	0	0	0	0	0	0	0	1	11080	581	21	3		3	OR4C46	11	51515989	Silent	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	162	51515989	83490527	1491	6865										
OR4C15	81309	bcgsc.ca	37	chr11	55322211	55322211	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gactccctctatgtgacaaaAaccatctcttttgaaggctg	7	11	2	2	rs9804659	byfrequency	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OR4C15-70	NM_001001920	exon1	c.A429G	p.K143K	GACAAAAACCATC	.	44	4	60	0	A|0.760;G|0.240	0	0	0	0	0	G	55322211	A	G	55322211	2	3	31	1	0	0	0	0	0	0	0	1	11077	11	1	4		4	OR4C15	11	55322211	Silent	SNP	A	TCGA-OR-A5KB-01A-11D-A30A-10	3806222	55322211	79684305	1492	6866										
OR4C11	219429	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	55371701	55371701	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tggggcttcctagtgtccggCtggacttgatggtcacaata	13	9	1	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OR4C11-69	NM_001004700	exon1	c.G149A	p.S50N	GTCCGGCTGGACT	.	34	23	59	0	.	0	0	0	0	0	T	55371701	C	T	55371701	3	4	31	1	0	0	0	0	1	0	0	0	11074	797	28	3	785	3	OR4C11	11	55371701	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	49490	55371701	79634815	1493	6867										
OR4C6	219432	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	55432829	55432829	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ctatgtatttttttcttaccTtcttgtcccttttggatgtc	5	9	2	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OR4C6-70	NM_001004704	exon1	c.T187A	p.F63I	CTTACCTTCTTGT	.	113	70	141	0	.	0	0	0	0	0	A	55432829	T	A	55432829	3	1	31	1	0	0	0	0	1	0	0	0	11081	1609	56	5	189	5	OR4C6	11	55432829	Missense_Mutation	SNP	T	TCGA-OR-A5KB-01A-11D-A30A-10	61128	55432829	79573687	1494	6868										
OR4C6	219432	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	55433022	55433023	+	Missense_Mutation	DNP	CC	CC	AA													0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ctacgtggccatctgtaagcCcctgcactacacgatcatca					novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	CC	CC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OR4C6-70	NM_001004704	exon1	c.C381A	p.P127Q	TAAGCCCCTGCAC	.	98	13	115	0	.	0	0	0	0	0	AA	55433023	CC	AA	55433022	3	1	31	1	0	0	0	0	1	0	0	0	11081	623	22	3	382	3	OR4C6	11	55433022	Missense_Mutation	DNP	CC	TCGA-OR-A5KB-01A-11D-A30A-10	193	55433022	79573494	1495	6869										
OR5D16	390144	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	55606310	55606310	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ttacctggaactgcaaattcCcctcttctttgtatttctgg	6	11	3	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OR5D16-73	NM_001005496	exon1	c.C83T	p.P28L	AAATTCCCCTCTT	.	73	41	92	0	.	0	0	0	0	0	T	55606310	C	T	55606310	3	4	31	1	0	0	0	0	1	0	0	0	11185	623	22	3	85	3	OR5D16	11	55606310	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	173288	55606310	79400206	1496	6870										
OR5W2	390148	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	55681212	55681212	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	aatcagggggttcaacatggGaaccacaagggtgtaaaaca	12	7	2	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OR5W2-70	NM_001001960	exon1	c.C847G	p.P283A	ACATGGGAACCAC	.	53	16	93	0	.	0	0	0	0	0	C	55681212	G	C	55681212	3	2	31	1	0	0	0	0	1	0	0	0	11214	1174	41	3	87	3	OR5W2	11	55681212	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	74902	55681212	79325304	1497	6871										
OR8H1	219469	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	56058500	56058500	+	Silent	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gaatctgacagtcccgtaagGatgaagtcaggcacatttgt	11	8	2	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OR8H1-71	NM_001005199	exon1	c.C39A	p.I13I	CGTAAGGATGAAG	.	29	16	41	0	.	0	0	0	0	0	T	56058500	G	T	56058500	2	4	31	1	0	0	0	0	0	0	0	1	11266	1164	41	3		3	OR8H1	11	56058500	Silent	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	377288	56058500	78948016	1498	6872										
OR5R1	219479	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	56185247	56185247	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	acggtgtggaagagggcaacCaggaagctgtatatatatgg	15	5	0	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OR5R1-70	NM_001004744	exon1	c.G462T	p.L154L	GGCAACCAGGAAG	.	94	56	137	0	.	0	0	0	0	0	A	56185247	C	A	56185247	2	1	31	1	0	0	0	0	0	0	0	1	11209	581	21	3		3	OR5R1	11	56185247	Silent	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	126747	56185247	78821269	1499	6873										
OR1S2	219958	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	57970677	57970677	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	aatgtagatgtccagggcatCaaagggaagaaatttttcta	10	5	2	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OR1S2-69	NM_001004459	exon1	c.G977C	p.X326S	GGGCATCAAAGGG	.	104	66	170	0	.	0	0	0	0	0	G	57970677	C	G	57970677	3	3	31	1	0	0	0	0	1	0	0	0	11002	840	29	3	3	3	OR1S2	11	57970677	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	1785430	57970677	77035839	1500	6874										
OR5B3	441608	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	58170454	58170454	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ccacagaggtaggagcctatGgccagacgagcacacacagt	12	12	0	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OR5B3-68	NM_001005469	exon1	c.C429T	p.A143A	GCCTATGGCCAGA	.	97	57	152	0	.	0	0	0	0	0	A	58170454	G	A	58170454	2	1	31	1	0	0	0	0	0	0	0	1	11181	1335	47	3		3	OR5B3	11	58170454	Silent	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	199777	58170454	76836062	1501	6875										
OR5B2	390190	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	58190520	58190520	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ccttgggagtgacagctgagGagtatccaaagtccaccaga	12	10	0	3	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OR5B2-71	NM_001005566	exon1	c.C215A	p.S72Y	GCTGAGGAGTATC	.	129	80	189	0	.	0	0	0	0	0	T	58190520	G	T	58190520	3	4	31	1	0	0	0	0	1	0	0	0	11179	1174	41	3	718	3	OR5B2	11	58190520	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	20066	58190520	76815996	1502	6876										
OR5B12	390191	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	58207133	58207133	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	acattggatctacagaaggaGagcctgaaagtgttcccagt	11	8	1	3	rs146093633		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OR5B12-68	NM_001004733	exon1	c.C492T	p.L164L	GAAGGAGAGCCTG	.	139	83	161	0	G|1.000;A|0.000	0	0	0	0	0	A	58207133	G	A	58207133	2	1	31	1	0	0	0	0	0	0	0	1	11177	929	33	3		3	OR5B12	11	58207133	Silent	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	16613	58207133	76799383	1503	6877										
OR5AN1	390195	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	59132631	59132631	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tgaagatcacttcagctaaaGgcaggtccaaggcattcaac	9	10	3	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OR5AN1-69	NM_001004729	exon1	c.G700T	p.G234C	GCTAAAGGCAGGT	.	112	69	164	0	.	0	0	0	0	0	T	59132631	G	T	59132631	3	4	31	1	0	0	0	0	1	0	0	0	11172	1000	35	3	702	3	OR5AN1	11	59132631	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	925498	59132631	75873885	1504	6878										
CCDC86	79080	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	60617436	60617436	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	aagaaacagcgccgggctgaGaacctgaaacgccgcctgga	13	12	0	3	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CCDC86-90	NM_024098	exon3	c.G912T	p.E304D	GGCTGAGAACCTG	.	95	45	146	1	.	0	0	0	0	0	T	60617436	G	T	60617436	3	4	31	1	0	0	0	0	1	0	0	0	2867	933	33	3	922	3	CCDC86	11	60617436	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	1484805	60617436	74389080	1505	6879										
SLC22A24	283238	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	62886491	62886491	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	aggagcatctgcccaacactGtaggaacataatagcaccat	8	11	1	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_001136506	exon4	c.C723A	p.Y241X	AACACTGTAGGAA	.	147	95	181	2	.	0	0	0	0	0	T	62886491	G	T	62886491	4	4	31	1	0	0	0	0	0	1	0	0	14488	1372	48	3	958	3	SLC22A24	11	62886491	Nonsense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	2269055	62886491	72120025	1506	6880										
FLRT1	23769	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	63885551	63885551	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gatgactatatggagtcaggGaccaagaaggataactccat	11	7	1	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FLRT1-90	NM_013280	exon2	c.G1812A	p.G604G	GTCAGGGACCAAG	.	171	79	178	1	.	0	0	0	0	0	A	63885551	G	A	63885551	2	1	31	1	0	0	0	0	0	0	0	1	5957	1161	41	3		3	FLRT1	11	63885551	Silent	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	999060	63885551	71120965	1507	6881										
NRXN2	9379	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr11	64375221	64375221	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gccggggagcgggtttgcggGgtgacaggagggtggtgcgg	25	6	0	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	NRXN2-232	NM_015080	exon23	c.C4586T	p.P1529L	TTGCGGGGTGACA	.	124	58	59	0	.	0	0	0	0	0	A	64375221	G	A	64375221	3	1	31	1	0	0	0	0	1	0	0	0	10695	1232	43	3	556	3	NRXN2	11	64375221	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	489670	64375221	70631295	1508	6882										
NRXN2	9379	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	64402917	64402917	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cccttcccaaagatgtatgtGgtcccggctgcagagagaag	12	11	0	3	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	NRXN2-232	NM_015080	exon18	c.C3411A	p.T1137T	GTATGTGGTCCCG	.	98	33	62	1	.	0	0	0	0	0	T	64402917	G	T	64402917	2	4	31	1	0	0	0	0	0	0	0	1	10695	1335	47	3		3	NRXN2	11	64402917	Silent	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	27696	64402917	70603599	1509	6883										
ZFPL1	7542	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	64855517	64855517	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ctcatgtctcgcctaggccgGgccgcagctgacagcgatcc	12	16	2	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ZFPL1-91	NM_006782	exon8	c.G864T	p.R288R	AGGCCGGGCCGCA	.	100	41	58	0	.	0	0	0	0	0	T	64855517	G	T	64855517	2	4	31	1	0	0	0	0	0	0	0	1	17693	1219	43	3		3	ZFPL1	11	64855517	Silent	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	452600	64855517	70150999	1510	6884										
TM7SF2	7108	hgsc.bcm.edu	37	chr11	64880090	64880090	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ggtccacccgcgtccctgccGgggctggaggtgctgtggag	18	13	0	0	rs4930284		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TM7SF2-91	NM_003273	exon2	c.G156C	p.P52P	CCTGCCGGGGCTG	.	8	8	0	0	G|0.005;C|0.995	0	0	0	0	0	C	64880090	G	C	64880090	2	2	31	1	0	0	0	0	0	0	0	1	16011	1103	39	2		2	TM7SF2	11	64880090	Silent	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	24573	64880090	70126426	1511	6885										
FAM89B	23625	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	65340987	65340987	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gctcctacccaccggatgcgGgcctgtctgacgacgaggag	14	14	1	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FAM89B-90	NM_001098784	exon2	c.G455T	p.G152V	GATGCGGGCCTGT	.	225	25	159	1	.	0	0	0	0	0	T	65340987	G	T	65340987	3	4	31	1	0	0	0	0	1	0	0	0	5667	1232	43	3	461	3	FAM89B	11	65340987	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	460897	65340987	69665529	1512	6886										
GAL3ST3	89792	hgsc.bcm.edu	37	chr11	65810209	65810209	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	accttgcggctgggctgccaCggctgcagctgcttggtgcg	16	13	0	0	rs61895584	byfrequency	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GAL3ST3-91	NM_033036	exon3	c.G1065A	p.P355P	CTGCCACGGCTGC	.	8	8	0	0	C|0.233;T|0.767	0	0	0	0	0	T	65810209	C	T	65810209	2	4	31	1	0	0	0	0	0	0	0	1	6219	523	19	1		1	GAL3ST3	11	65810209	Silent	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	469222	65810209	69196307	1513	6887										
GAL3ST3	89792	hgsc.bcm.edu;broad.mit.edu	37	chr11	65810462	65810463	+	Frame_Shift_Del	DEL	GC	GC	-													0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cggccaggcgcgagctggcgGcgcgcgcgttgagcttggcg					novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	GC	GC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GAL3ST3-91	NM_033036	exon3	c.811_812del	p.271_271del	CTGGCGGCGCGCG	.	54	24	4	0	.	0	0	0	0	0	-	65810463	GC	-	65810462	7	5	31	1	0	1	0	1	0	0	0	0	6219	1203	42	0	487	0	GAL3ST3	11	65810462	Frame_Shift_Del	DEL	GC	TCGA-OR-A5KB-01A-11D-A30A-10	253	65810462	69196054	1514	6888										
TMEM151A	256472	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr11	66062127	66062127	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cgacgcccacacggtgctggCgctgatccgccggctgcagc	14	17	0	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TMEM151A-90	NM_153266	exon2	c.C410A	p.A137E	TGCTGGCGCTGAT	.	93	21	13	0	.	0	0	0	0	0	A	66062127	C	A	66062127	3	1	31	1	0	0	0	0	1	0	0	0	16107	768	27	2	416	2	TMEM151A	11	66062127	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	251665	66062127	68944389	1515	6889										
ACTN3	89	broad.mit.edu;bcgsc.ca	37	chr11	66326794	66326794	+	RNA	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gcggcgccacgaggcctttgAgagcgacctggcggcgcacc	16	15	0	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ACTN3-90	.	.	.	.	CCTTTGAGAGCGA	.	245	88	66	1	.	0	0	0	0	0	G	66326794	A	G	66326794	1	3	31	0	1	0	0	0	0	0	0	0	206	304	11	4		4	ACTN3	11	66326794	RNA	SNP	A	TCGA-OR-A5KB-01A-11D-A30A-10	264667	66326794	68679722	1516	6890										
CCS	9973	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr11	66366693	66366693	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gaaggcacggggcggcaggcGgtactcaagggcatgggcag	20	9	1	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CCS-90	NM_005125	exon3	c.G219T	p.A73A	GCAGGCGGTACTC	.	90	20	87	0	.	0	0	0	0	0	T	66366693	G	T	66366693	2	4	31	1	0	0	0	0	0	0	0	1	2958	1103	39	2		2	CCS	11	66366693	Silent	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	39899	66366693	68639823	1517	6891										
SPTBN2	6712	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	66466921	66466921	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tcccgaatcttgtcggcgtgGatgttgccttcagataccag	11	11	2	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SPTBN2-155	NM_006946	exon17	c.C3732G	p.I1244M	GGCGTGGATGTTG	.	197	79	147	2	.	0	0	0	0	0	C	66466921	G	C	66466921	3	2	31	1	0	0	0	0	1	0	0	0	15157	1164	41	3	3524	3	SPTBN2	11	66466921	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	100228	66466921	68539595	1518	6892										
RHOD	29984	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	66838961	66838961	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ctacctcgagtgctcggctcGgctccatgacaacgtccacg	10	16	0	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	RHOD-659	NM_014578	exon5	c.G521A	p.R174Q	CGGCTCGGCTCCA	.	192	41	38	0	.	0	0	0	0	0	A	66838961	G	A	66838961	3	1	31	1	0	0	0	0	1	0	0	0	13372	1116	39	1	539	1	RHOD	11	66838961	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	372040	66838961	68167555	1519	6893										
GPR152	390212	bcgsc.ca;mdanderson.org	37	chr11	67219676	67219676	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gaccaggtcgtaccaccagaCggcagcctcggggaagacca	13	14	0	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GPR152-90	NM_206997	exon1	c.G520A	p.V174I	ACCAGACGGCAGC	.	131	48	36	1	.	0	0	0	0	0	T	67219676	C	T	67219676	3	4	31	1	0	0	0	0	1	0	0	0	6678	536	19	1	896	1	GPR152	11	67219676	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	380715	67219676	67786840	1520	6894										
PITPNM1	9600	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	67264702	67264702	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ccgcagcccctaggactcacCctccagggcgggcatcacag	11	18	2	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PITPNM1-227	NM_001130848	exon14	c.G2146T	p.A716S	ACTCACCCTCCAG	.	240	100	210	0	.	0	0	0	0	0	A	67264702	C	A	67264702	3	1	31	1	0	0	0	0	1	0	0	0	11979	637	22	3	1632	3	PITPNM1	11	67264702	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	45026	67264702	67741814	1521	6895										
FGF3	2248	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	69625429	69625429	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cgtattatagcccagctcgtGgatccgctccacaaactcgc	8	15	0	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FGF3-847	NM_005247	exon3	c.C364A	p.H122N	GCTCGTGGATCCG	.	204	104	211	1	.	0	0	0	0	0	T	69625429	G	T	69625429	3	4	31	1	0	0	0	0	1	0	0	0	5872	1348	47	3	359	3	FGF3	11	69625429	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	2360727	69625429	65381087	1522	6896										
SHANK2	22941	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	70331792	70331792	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gtcaaccataaatgcttgccCatctgcatagactgtgcagg	9	11	2	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SHANK2-94	NM_133266	exon10	c.G2842T	p.G948W	CTTGCCCATCTGC	.	161	76	211	1	.	0	0	0	0	0	A	70331792	C	A	70331792	3	1	31	1	0	0	0	0	1	0	0	0	14300	594	21	3	951	3	SHANK2	11	70331792	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	706363	70331792	64674724	1523	6897										
KRTAP5-9	3846	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	71259735	71259735	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tggctgctccggaggctgtgGctccagctgtggaggctgtg	18	10	0	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_005553	exon1	c.G32T	p.G11V	GCTGTGGCTCCAG	.	331	189	405	1	.	0	0	0	0	0	T	71259735	G	T	71259735	3	4	31	1	0	0	0	0	1	0	0	0	8590	1203	42	3	34	3	KRTAP5-9	11	71259735	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	927943	71259735	63746781	1524	6898										
UCP2	7351	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	73687909	73687909	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cttcctctcgggcaatggtcTtgtaggcattgacggtgctt	12	10	2	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	UCP2-90	NM_003355	exon5	c.A491T	p.K164M	ATGGTCTTGTAGG	.	229	116	281	0	.	0	0	0	0	0	A	73687909	T	A	73687909	3	1	31	1	0	0	0	0	1	0	0	0	16969	1609	56	5	454	5	UCP2	11	73687909	Missense_Mutation	SNP	T	TCGA-OR-A5KB-01A-11D-A30A-10	2428174	73687909	61318607	1525	6899										
ARRB1	408	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	chr11	74978733	74978733	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gagattggtatctactggcgTctcgttctctggaactaaac	10	9	3	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ARRB1-567	NM_004041	exon15	c.A1108T	p.T370S	CTGGCGTCTCGTT	.	13	8	19	0	.	0	0	0	0	0	A	74978733	T	A	74978733	3	1	31	1	0	0	0	0	1	0	0	0	981	1667	58	5	156	5	ARRB1	11	74978733	Missense_Mutation	SNP	T	TCGA-OR-A5KB-01A-11D-A30A-10	1290824	74978733	60027783	1526	6900										
UVRAG	7405	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	75563004	75563004	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ccatcagctccttgatacctActttacacttcacttgtgta	4	13	2	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	UVRAG-229	NM_003369	exon2	c.A194T	p.Y65F	ATACCTACTTTAC	.	64	33	92	0	.	0	0	0	0	0	T	75563004	A	T	75563004	3	4	31	1	0	0	0	0	1	0	0	0	17146	391	14	5	200	5	UVRAG	11	75563004	Missense_Mutation	SNP	A	TCGA-OR-A5KB-01A-11D-A30A-10	584271	75563004	59443512	1527	6901										
TMEM135	65084	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	87013485	87013485	+	Splice_Site	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	aggaaatttgtggattcaatGtgagctctttatcttgatat	9	4	3	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TMEM135-514	NM_001168724	exon7	c.632+1G>T	.	TTCAATGTGAGCT	.	56	24	105	0	.	0	0	0	0	0	T	87013485	G	T	87013485	5	4	31	1	0	0	0	0	0	0	1	0	16088	1391	48	3	729	3	TMEM135	11	87013485	Splice_Site	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	11450481	87013485	47993031	1528	6902										
CTSC	1075	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	88045699	88045699	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gtctcgttgcagtaagtggtCaccttgctgccctcttcttt	9	12	4	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CTSC-90	NM_001814	exon3	c.G342C	p.V114V	AGTGGTCACCTTG	.	61	32	62	0	.	0	0	0	0	0	G	88045699	C	G	88045699	2	3	31	1	0	0	0	0	0	0	0	1	4037	813	29	3		3	CTSC	11	88045699	Silent	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	1032214	88045699	46960817	1529	6903										
GRM5	2915	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr11	88242036	88242036	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tgcgcgcctcccgtgacttcGatggccggcagaggctggat	15	13	0	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GRM5-949	NM_001143831	exon9	c.C3363T	p.I1121I	GACTTCGATGGCC	.	71	31	58	0	.	0	0	0	0	0	A	88242036	G	A	88242036	2	1	31	1	0	0	0	0	0	0	0	1	6821	1048	37	1		1	GRM5	11	88242036	Silent	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	196337	88242036	46764480	1530	6904										
NOX4	50507	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	89223635	89223635	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	accttacttacccccaacatCtggtggaggtagtgatactc	8	12	1	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	NOX4-515	NM_001143836	exon2	c.G144C	p.Q48H	CAACATCTGGTGG	.	27	17	31	0	.	0	0	0	0	0	G	89223635	C	G	89223635	3	3	31	1	0	0	0	0	1	0	0	0	10587	912	32	3	1660	3	NOX4	11	89223635	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	981599	89223635	45782881	1531	6905										
FAT3	120114	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	92534391	92534391	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ggattttgcccagtcagaatGtctggttcagcacagttaat	10	8	3	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FAT3-73	NM_001008781	exon9	c.G8212A	p.V2738I	CAGAATGTCTGGT	.	56	30	116	0	.	0	0	0	0	0	A	92534391	G	A	92534391	3	1	31	1	0	0	0	0	1	0	0	0	5710	1377	48	3	8246	3	FAT3	11	92534391	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	3310756	92534391	42472125	1532	6906										
FAT3	120114	hgsc.bcm.edu;bcgsc.ca	37	chr11	92616454	92616455	+	Frame_Shift_Ins	INS	-	-	G													0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ccgcatcctgacagcccggcINSggggcgtggtcgtgtgcagt					novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FAT3-73	NM_001008781	exon23	c.12832_12833insG	p.R4278fs	GCCCGGCGGGGCG	.	82	35	59	0	.	0	0	0	0	0	G	92616455	-	G	92616454	7	5	31	1	0	1	1	0	0	0	0	0	5710	759	27	0	12922	0	FAT3	11	92616454	Frame_Shift_Ins	INS	-	TCGA-OR-A5KB-01A-11D-A30A-10	82063	92616454	42390062	1533	6907										
FOLR4	390243	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	94039684	94039684	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ttcctctgccttcagtgcatCccctggaaggacaatgcctg	9	14	2	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FOLR4-23	NM_001199206	exon2	c.C144T	p.I48I	GTGCATCCCCTGG	.	79	39	87	0	.	0	0	0	0	0	T	94039684	C	T	94039684	2	4	31	1	0	0	0	0	0	0	0	1	6003	845	30	3		3	FOLR4	11	94039684	Silent	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	1423230	94039684	40966832	1534	6908										
CNTN5	53942	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	99942487	99942487	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	atgatccacaatgtgaatcaAtcagatgctggaatgtatca	8	7	3	3	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CNTN5-366	NM_001243270	exon11	c.A1350T	p.Q450H	GAATCAATCAGAT	.	81	50	127	0	.	0	0	0	0	0	T	99942487	A	T	99942487	3	4	31	1	0	0	0	0	1	0	0	0	3650	98	4	5	1388	5	CNTN5	11	99942487	Missense_Mutation	SNP	A	TCGA-OR-A5KB-01A-11D-A30A-10	5902803	99942487	35064029	1535	6909										
PDGFD	80310	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	103818443	103818444	+	Nonsense_Mutation	DNP	GG	GG	AT													0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ctctgaagctgctgcgggttGgaaatcttcctggaaggcaa					novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	GG	GG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PDGFD-723	NM_025208	exon4	c.C519A	p.FQ173L*	GGGTTGGAAATCT	.	43	0	88	0	.	0	0	0	0	0	AT	103818444	GG	AT	103818443	4	1	31	1	0	0	0	0	0	1	0	0	11689	1357	47	3	608	3	PDGFD	11	103818443	Nonsense_Mutation	DNP	GG	TCGA-OR-A5KB-01A-11D-A30A-10	3875956	103818443	31188073	1536	6910										
ATM	472	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	108236144	108236144	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ggaagaaggcactgtgctcaGtgttggtggacaagtgaatt	15	5	1	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ATM-3419	NM_000051	exon63	c.G9080T	p.S3027I	TGCTCAGTGTTGG	.	46	28	67	0	.	0	0	0	0	0	T	108236144	G	T	108236144	3	4	31	1	0	0	0	0	1	0	0	0	1110	1029	36	3	9326	3	ATM	11	108236144	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	4417701	108236144	26770372	1537	6911										
ARHGAP20	57569	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	110482045	110482045	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	taacttacagttatccctagCattggtaatgacatgttgat	7	7	0	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ARHGAP20-230	NM_020809	exon8	c.G696T	p.M232I	CCCTAGCATTGGT	.	48	23	99	0	.	0	0	0	0	0	A	110482045	C	A	110482045	3	1	31	1	0	0	0	0	1	0	0	0	870	710	25	3	2915	3	ARHGAP20	11	110482045	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	2245901	110482045	24524471	1538	6912										
TIMM8B	26521	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	111956172	111956172	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	catttatcccaacataactcCatgaagtgatgcacctaaaa	4	11	0	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TIMM8B-90	NM_012459	exon2	c.G144T	p.M48I	TAACTCCATGAAG	.	42	24	48	0	.	0	0	0	0	0	A	111956172	C	A	111956172	3	1	31	1	0	0	0	0	1	0	0	0	15952	594	21	3	156	3	TIMM8B	11	111956172	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	1474127	111956172	23050344	1539	6913										
BCO2	83875	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	112087010	112087010	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	agcaccaggaaccaatgaagAagatggtggggttattcttt	12	6	1	3	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	BCO2-68	NM_031938	exon11	c.A1583C	p.E528A	ATGAAGAAGATGG	.	95	57	128	0	.	0	0	0	0	0	C	112087010	A	C	112087010	3	2	31	1	0	0	0	0	1	0	0	0	1386	246	9	5	1625	5	BCO2	11	112087010	Missense_Mutation	SNP	A	TCGA-OR-A5KB-01A-11D-A30A-10	130838	112087010	22919506	1540	6914										
SCN2B	6327	bcgsc.ca	37	chr11	118038851	118038851	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	atggccacggtggcggtcagGggggttcatgatgtagcagt	18	7	2	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SCN2B-90	NM_004588	exon3	c.C397G	p.P133A	GGTCAGGGGGGTT	.	199	127	253	4	.	0	0	0	0	0	C	118038851	G	C	118038851	3	2	31	1	0	0	0	0	1	0	0	0	13952	1232	43	3	258	3	SCN2B	11	118038851	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	5951841	118038851	16967665	1541	6915										
NLRX1	79671	bcgsc.ca	37	chr11	119052826	119052826	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gtccaacaacccgctgacggCggcaggtgttgccgtgctaa	13	13	0	1	rs4245191	byfrequency	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	NLRX1-92	NM_024618	exon9	c.C2378A	p.A793E	TGACGGCGGCAGG	.	109	5	107	0	C|0.378;A|0.622	0	0	0	0	0	A	119052826	C	A	119052826	3	1	31	1	0	0	0	0	1	0	0	0	10514	768	27	2	2408	2	NLRX1	11	119052826	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	1013975	119052826	15953690	1542	6916										
TECTA	7007	bcgsc.ca	37	chr11	120998820	120998820	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gcttccccaagcgggagaccGtgtgcctgctcagccagaac	12	15	1	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TECTA-225	NM_005422	exon8	c.G2134C	p.V712L	GAGACCGTGTGCC	.	82	47	75	2	.	0	0	0	0	0	C	120998820	G	C	120998820	3	2	31	1	0	0	0	0	1	0	0	0	15784	1145	40	2	2164	2	TECTA	11	120998820	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	1945994	120998820	14007696	1543	6917										
HSPA8	3312	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	122929389	122929389	+	Silent	SNP	C	C	A													0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tcttttcccgtactcttgtcCacagcagagacattgagtat					novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	HSPA8-654	NM_006597	exon7	c.G1473T	p.V491V	CTTGTCCACAGCA	.	28	13	61	0	.	0	0	0	0	0	A	122929389	C	A	122929389	2	1	31	1	0	0	0	0	0	0	0	1	7437	581	21	3		3	HSPA8	11	122929389	Silent	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	1930569	122929389	12077127	1544	6918	69	2								
HSPA8	3312	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	122929391	122929391	+	Missense_Mutation	SNP	C	C	A													0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ttttcccgtactcttgtccaCagcagagacattgagtatac					novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	HSPA8-654	NM_006597	exon7	c.G1471T	p.V491L	TGTCCACAGCAGA	.	28	13	61	0	.	0	0	0	0	0	A	122929391	C	A	122929391	3	1	31	1	0	0	0	0	1	0	0	0	7437	478	17	3	481	3	HSPA8	11	122929391	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	2	122929391	12077125	1545	6919	69	2								
OR10S1	219873	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	123847992	123847992	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gttgacagatagccagatagCggtcataggccatgactgtg	13	8	1	4	rs199683540	alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OR10S1-70	NM_001004474	exon1	c.G407T	p.R136L	AGATAGCGGTCAT	.	101	57	119	0	.	0	0	0	0	0	A	123847992	C	A	123847992	3	1	31	1	0	0	0	0	1	0	0	0	10947	768	27	2	592	2	OR10S1	11	123847992	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	918601	123847992	11158524	1546	6920										
VWA5A	4013	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	124015980	124015980	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gctgggccaccatcctggccGtgatctggctgcacagcaat	12	14	1	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	VWA5A-92	NM_014622	exon17	c.G2191T	p.V731L	CTGGCCGTGATCT	.	65	44	125	0	.	0	0	0	0	0	T	124015980	G	T	124015980	3	4	31	1	0	0	0	0	1	0	0	0	17280	1145	40	2	2257	2	VWA5A	11	124015980	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	167988	124015980	10990536	1547	6921										
OR8A1	390275	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	124440239	124440239	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	catggatctctgctactcctCcgtcattacccctaagatgc	6	15	2	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OR8A1-69	NM_001005194	exon1	c.C275T	p.S92F	ACTCCTCCGTCAT	.	84	46	122	0	.	0	0	0	0	0	T	124440239	C	T	124440239	3	4	31	1	0	0	0	0	1	0	0	0	11254	855	30	3	277	3	OR8A1	11	124440239	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	424259	124440239	10566277	1548	6922										
NTM	50863	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	132204993	132204993	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cgtcgaggagggcaggctgcGtctggctgctgcctcttctg	16	12	3	0	rs145004908	alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	NTM-95	NM_001144058	exon8	c.G1021T	p.V341F	GGCTGCGTCTGGC	.	43	27	57	0	G|1.000;A|0.000	0	0	0	0	0	T	132204993	G	T	132204993	3	4	31	1	0	0	0	0	1	0	0	0	10728	1145	40	2	1154	2	NTM	11	132204993	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	7764754	132204993	2801523	1549	6923										
CACNA2D4	93589	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	1994182	1994182	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gatctggaaggcttctctcaGggcttggtccacgaccccca	11	14	3	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CACNA2D4-23	NM_172364	exon10	c.C1129A	p.L377M	CTCTCAGGGCTTG	.	113	73	132	0	.	0	0	0	0	0	T	1994182	G	T	1994182	3	4	31	1	0	0	0	0	1	0	0	0	2557	991	35	3	2400	3	CACNA2D4	12	1994182	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10		1994182	131857713	1550	6924										
FGF6	2251	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	4554551	4554551	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	atctctccagctagcccggcGcgagacctggacagcagggt	13	14	1	1	rs202212518	alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FGF6-659	NM_020996	exon1	c.C186G	p.R62R	CCCGGCGCGAGAC	.	86	52	69	0	G|0.999;A|0.000	0	0	0	0	0	C	4554551	G	C	4554551	2	2	31	1	0	0	0	0	0	0	0	1	5875	1074	38	2		2	FGF6	12	4554551	Silent	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	2560369	4554551	129297344	1551	6925										
GALNT8	26290	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	4829958	4829958	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ctttacaaaacctgtttacgGgtggtctccacagggagctt	10	10	1	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GALNT8-230	NM_017417	exon1	c.G115T	p.G39C	TTTACGGGTGGTC	.	144	91	124	1	.	0	0	0	0	0	T	4829958	G	T	4829958	3	4	31	1	0	0	0	0	1	0	0	0	6239	1232	43	3	117	3	GALNT8	12	4829958	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	275407	4829958	129021937	1552	6926										
KCNA6	3742	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr12	4920365	4920365	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	atcttcttcctcttcatcggGgtcatcctcttctccagtgc	6	15	7	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	KCNA6-93	NM_002235	exon1	c.G1158A	p.G386G	CATCGGGGTCATC	.	267	176	275	1	.	0	0	0	0	0	A	4920365	G	A	4920365	2	1	31	1	0	0	0	0	0	0	0	1	8028	1219	43	3		3	KCNA6	12	4920365	Silent	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	90407	4920365	128931530	1553	6927										
KCNA5	3741	bcgsc.ca	37	chr12	5153809	5153809	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tgaggaacgagtacttcttcGaccgcaaccggcccagcttc	10	14	1	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	KCNA5-715	NM_002234	exon1	c.G496T	p.D166Y	TTCTTCGACCGCA	.	105	75	103	2	.	0	0	0	0	0	T	5153809	G	T	5153809	3	4	31	1	0	0	0	0	1	0	0	0	8027	1058	37	2	498	2	KCNA5	12	5153809	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	233444	5153809	128698086	1554	6928										
ANO2	57101	broad.mit.edu;bcgsc.ca	37	chr12	6030236	6030236	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ttctcaagctccagtccagcCtccatcagattgtgctcaaa	6	14	3	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ANO2-139	NM_020373	exon3	c.G492T	p.E164D	TCCAGCCTCCATC	.	85	62	79	2	.	0	0	0	0	0	A	6030236	C	A	6030236	3	1	31	1	0	0	0	0	1	0	0	0	697	680	24	3	2600	3	ANO2	12	6030236	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	876427	6030236	127821659	1555	6929										
VWF	7450	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	6078387	6078387	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	catgccttaccacagcgacaGcttgggcagcacgctgaggt	12	13	0	1	rs192262780		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	VWF-163	NM_000552	exon45	c.C7719A	p.S2573R	GCGACAGCTTGGG	.	155	102	173	0	G|0.999;T|0.000	0	0	0	0	0	T	6078387	G	T	6078387	3	4	31	1	0	0	0	0	1	0	0	0	17284	962	34	3	754	3	VWF	12	6078387	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	48151	6078387	127773508	1556	6930										
VWF	7450	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	6125362	6125362	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gcctggcaccatgcatttctGaagtcaagtatcgcacagca	9	12	2	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	VWF-163	NM_000552	exon31	c.C5348G	p.S1783X	ATTTCTGAAGTCA	.	286	74	227	0	.	0	0	0	0	0	C	6125362	G	C	6125362	4	2	31	1	0	0	0	0	0	1	0	0	17284	1294	45	3	3181	3	VWF	12	6125362	Nonsense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	46975	6125362	127726533	1557	6931										
LAG3	3902	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	6883823	6883823	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tcattttgaactgctccttcAgccgccctgaccgcccagcc	7	18	2	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	LAG3-90	NM_002286	exon4	c.A574T	p.S192C	TCCTTCAGCCGCC	.	104	66	89	1	.	0	0	0	0	0	T	6883823	A	T	6883823	3	4	31	1	0	0	0	0	1	0	0	0	8622	188	7	5	588	5	LAG3	12	6883823	Missense_Mutation	SNP	A	TCGA-OR-A5KB-01A-11D-A30A-10	758461	6883823	126968072	1558	6932										
CD163L1	283316	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	7528358	7528358	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cttccggatgttgaacaatgGggcataatgcaaggtgagtt	13	6	0	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CD163L1-100	NM_174941	exon10	c.C2624T	p.P875L	ACAATGGGGCATA	.	135	95	126	0	.	0	0	0	0	0	A	7528358	G	A	7528358	3	1	31	1	0	0	0	0	1	0	0	0	2974	1232	43	3	1777	3	CD163L1	12	7528358	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	644535	7528358	126323537	1559	6933										
C3AR1	719	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	8212382	8212382	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gcaggccatccctacattgcGatgattctgacaccagattg	9	12	1	3	rs61736561	alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	C3AR1-227	NM_004054	exon2	c.C400G	p.R134G	CATTGCGATGATT	.	122	76	151	0	G|0.986;A|0.014	0	0	0	0	0	C	8212382	G	C	8212382	3	2	31	1	0	0	0	0	1	0	0	0	2211	1058	37	2	1052	2	C3AR1	12	8212382	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	684024	8212382	125639513	1560	6934										
MFAP5	8076	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	8813475	8813475	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ctacctcctcgttgactattGacccccaggggtatccagtc	8	15	0	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MFAP5-577	NM_003480	exon3	c.C78A	p.V26V	ACTATTGACCCCC	.	58	35	77	0	.	0	0	0	0	0	T	8813475	G	T	8813475	2	4	31	1	0	0	0	0	0	0	0	1	9546	1277	45	3		3	MFAP5	12	8813475	Silent	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	601093	8813475	125038420	1561	6935										
PZP	5858	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	9334698	9334698	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	actccacagggaaggataagGcaaaactgcctttcactgga	10	10	1	0	rs188078627	alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PZP-157	NM_002864	exon14	c.C1562A	p.A521D	GATAAGGCAAAAC	.	118	75	104	1	G|0.999;A|0.001	0	0	0	0	0	T	9334698	G	T	9334698	3	4	31	1	0	0	0	0	1	0	0	0	12904	1203	42	3	2978	3	PZP	12	9334698	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	521223	9334698	124517197	1562	6936										
PZP	5858	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	9353011	9353011	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ccatgatactgattatctttGgcacctgaactttgacctca	6	11	2	4	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PZP-157	NM_002864	exon7	c.C704A	p.P235Q	ATCTTTGGCACCT	.	60	36	69	1	.	0	0	0	0	0	T	9353011	G	T	9353011	3	4	31	1	0	0	0	0	1	0	0	0	12904	1348	47	3	3864	3	PZP	12	9353011	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	18313	9353011	124498884	1563	6937										
STYK1	55359	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	10782211	10782211	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	caccaggtttttgtgtttccCcaggtattgatggaattgga	11	7	0	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	STYK1-1379	NM_018423	exon6	c.G514T	p.G172W	GTTTCCCCAGGTA	.	64	33	91	0	.	0	0	0	0	0	A	10782211	C	A	10782211	3	1	31	1	0	0	0	0	1	0	0	0	15396	623	22	3	778	3	STYK1	12	10782211	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	1429200	10782211	123069684	1564	6938										
ATF7IP	55729	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	14578095	14578095	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cgattaatgaaaatgttattGaagataacaaaagtgagaat	8	2	0	4	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ATF7IP-252	NM_018179	exon2	c.G1246T	p.E416X	GTTATTGAAGATA	.	31	19	54	1	.	0	0	0	0	0	T	14578095	G	T	14578095	4	4	31	1	0	0	0	0	0	1	0	0	1088	1291	45	3	1248	3	ATF7IP	12	14578095	Nonsense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	3795884	14578095	119273800	1565	6939										
PDE3A	5139	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr12	20523173	20523173	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ccctgccctgtataccgaggGaacaggtaagcactggcaac	11	13	0	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PDE3A-94	NM_000921	exon1	c.G955T	p.E319X	CCGAGGGAACAGG	.	37	25	53	0	.	0	0	0	0	0	T	20523173	G	T	20523173	4	4	31	1	0	0	0	0	0	1	0	0	11666	1175	41	3	957	3	PDE3A	12	20523173	Nonsense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	5945078	20523173	113328722	1566	6940										
SLCO1C1	53919	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	20886031	20886031	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tggcaggactaactgtctccTaccaagggtatgttccctca	9	12	2	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SLCO1C1-97	NM_017435	exon10	c.T1375A	p.Y459N	GTCTCCTACCAAG	.	49	30	51	0	.	0	0	0	0	0	A	20886031	T	A	20886031	3	1	31	1	0	0	0	0	1	0	0	0	14760	1522	53	5	1409	5	SLCO1C1	12	20886031	Missense_Mutation	SNP	T	TCGA-OR-A5KB-01A-11D-A30A-10	362858	20886031	112965864	1567	6941										
SOX5	6660	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	23893815	23893815	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	actcacttgttcttgttgctGcttggccagctccatttgct	8	12	2	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SOX5-655	NM_006940	exon5	c.C727A	p.Q243K	GTTGCTGCTTGGC	.	50	33	74	0	.	0	0	0	0	0	T	23893815	G	T	23893815	3	4	31	1	0	0	0	0	1	0	0	0	14989	1328	46	3	1618	3	SOX5	12	23893815	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	3007784	23893815	109958080	1568	6942										
CCDC91	55297	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	28605587	28605587	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gaacaaagaaaaataagtcaGgttagtaatattaactgtta	7	3	1	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CCDC91-90	NM_018318	exon10	c.G1101C	p.Q367H	AAGTCAGGTTAGT	.	35	14	53	0	.	0	0	0	0	0	C	28605587	G	C	28605587	3	2	31	1	0	0	0	0	1	0	0	0	2876	1014	35	3	1139	3	CCDC91	12	28605587	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	4711772	28605587	105246308	1569	6943										
OVCH1	341350	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	29598275	29598275	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	acaagggcatggaatgtcacCctcaccagcggtccaggact	11	13	2	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OVCH1-210	NM_183378	exon23	c.G2817T	p.R939S	TGTCACCCTCACC	.	52	34	64	0	.	0	0	0	0	0	A	29598275	C	A	29598275	3	1	31	1	0	0	0	0	1	0	0	0	11352	622	22	3	611	3	OVCH1	12	29598275	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	992688	29598275	104253620	1570	6944										
OVCH1	341350	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	29607850	29607850	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gttttgcatttattatttgtCtgaagtgaagcaggacctgt	10	5	1	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OVCH1-210	NM_183378	exon21	c.G2454T	p.Q818H	ATTTGTCTGAAGT	.	60	36	83	0	.	0	0	0	0	0	A	29607850	C	A	29607850	3	1	31	1	0	0	0	0	1	0	0	0	11352	912	32	3	982	3	OVCH1	12	29607850	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	9575	29607850	104244045	1571	6945										
OVCH1	341350	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	29628092	29628092	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tgttactagaactgaatattGaagtgatggtcaacattcca	8	6	1	4	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OVCH1-210	NM_183378	exon14	c.C1502A	p.S501X	AATATTGAAGTGA	.	103	70	151	0	.	0	0	0	0	0	T	29628092	G	T	29628092	4	4	31	1	0	0	0	0	0	1	0	0	11352	1294	45	3	1962	3	OVCH1	12	29628092	Nonsense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	20242	29628092	104223803	1572	6946										
TMTC1	83857	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	29908758	29908758	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cccagaaacaaactgagcagCaagaagaagggagacaccgt	11	10	0	5	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TMTC1-90	NM_001193451	exon4	c.G615T	p.L205F	GAGCAGCAAGAAG	.	82	47	95	0	.	0	0	0	0	0	A	29908758	C	A	29908758	3	1	31	1	0	0	0	0	1	0	0	0	16297	709	25	3	2093	3	TMTC1	12	29908758	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	280666	29908758	103943137	1573	6947										
KIF21A	55605	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	39695356	39695356	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tcatgacccttcatctctccCactggcataaaagtatccat	4	14	3	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	KIF21A-97	NM_001173464	exon37	c.G4857T	p.V1619V	CTCTCCCACTGGC	.	171	126	179	0	.	0	0	0	0	0	A	39695356	C	A	39695356	2	1	31	1	0	0	0	0	0	0	0	1	8309	581	21	3		3	KIF21A	12	39695356	Silent	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	9786598	39695356	94156539	1574	6948										
CNTN1	1272	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	41463834	41463834	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	atccttgtctacttggaattCtgaatgtgttgtgacagctg	10	7	2	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CNTN1-1149	NM_001843	exon24	c.C3054A	p.F1018L	GGAATTCTGAATG	.	72	49	85	0	.	0	0	0	0	0	A	41463834	C	A	41463834	3	1	31	1	0	0	0	0	1	0	0	0	3646	912	32	3	3144	3	CNTN1	12	41463834	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	1768478	41463834	92388061	1575	6949										
ADAMTS20	80070	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	43821221	43821221	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	agcactttgtccattttcatCctggcagaccacagccctat	6	14	1	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ADAMTS20-795	NM_025003	exon27	c.G3997T	p.D1333Y	TTTCATCCTGGCA	.	94	56	102	0	.	0	0	0	0	0	A	43821221	C	A	43821221	3	1	31	1	0	0	0	0	1	0	0	0	266	855	30	3	1786	3	ADAMTS20	12	43821221	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	2357387	43821221	90030674	1576	6950										
PUS7L	83448	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	44142372	44142372	+	Silent	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ttgatagctaaaaaaccaatCgcttcaaacatttccaggtt	5	9	1	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PUS7L-91	NM_001098614	exon3	c.G951T	p.A317A	ACCAATCGCTTCA	.	38	26	40	0	.	0	0	0	0	0	A	44142372	C	A	44142372	2	1	31	1	0	0	0	0	0	0	0	1	12869	871	31	2		2	PUS7L	12	44142372	Silent	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	321151	44142372	89709523	1577	6951										
TWF1	5756	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	44190794	44190794	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gctacctttctaattacatcCatttgtagttgtctttctac	4	10	3	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TWF1-797	NM_001242397	exon9	c.G888T	p.M296I	TACATCCATTTGT	.	58	41	91	0	.	0	0	0	0	0	A	44190794	C	A	44190794	3	1	31	1	0	0	0	0	1	0	0	0	16819	594	21	3	193	3	TWF1	12	44190794	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	48422	44190794	89661101	1578	6952										
DBX2	440097	broad.mit.edu;bcgsc.ca	37	chr12	45444412	45444412	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cttgaaaagcccaccgcgttCcgtagggcgccccggcgggg	15	15	0	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DBX2-90	NM_001004329	exon1	c.G299C	p.G100A	CGCGTTCCGTAGG	.	158	70	103	1	.	0	0	0	0	0	G	45444412	C	G	45444412	3	3	31	1	0	0	0	0	1	0	0	0	4266	855	30	3	736	3	DBX2	12	45444412	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	1253618	45444412	88407483	1579	6953										
ANO6	196527	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	45742042	45742042	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ttgagaagaaccggatgaatGatttttacatagttgataga	10	3	0	6	rs145491348	alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ANO6-516	NM_001204803	exon6	c.G640C	p.D214H	ATGAATGATTTTT	.	119	29	137	0	G|1.000;T|0.000	0	0	0	0	0	C	45742042	G	C	45742042	3	2	31	1	0	0	0	0	1	0	0	0	701	1290	45	3	615	3	ANO6	12	45742042	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	297630	45742042	88109853	1580	6954										
DHH	50846	ucsc.edu;bcgsc.ca	37	chr12	49485010	49485010	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cagcaacccatacttgttgcGgtcgcggtcagacgtagtga	12	11	1	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DHH-710	NM_021044	exon2	c.C466A	p.R156S	TGTTGCGGTCGCG	.	256	184	268	3	.	0	0	0	0	0	T	49485010	G	T	49485010	3	4	31	1	0	0	0	0	1	0	0	0	4494	1116	39	2	732	2	DHH	12	49485010	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	3742968	49485010	84366885	1581	6955										
NCKAP5L	57701	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	50195681	50195681	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tttctgctgaaacagggcacTcagcatctggttctgccgtt	10	11	4	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	NCKAP5L-68	NM_001037806	exon6	c.A301T	p.S101C	GGGCACTCAGCAT	.	168	117	176	0	.	0	0	0	0	0	A	50195681	T	A	50195681	3	1	31	1	0	0	0	0	1	0	0	0	10253	1551	54	5	3735	5	NCKAP5L	12	50195681	Missense_Mutation	SNP	T	TCGA-OR-A5KB-01A-11D-A30A-10	710671	50195681	83656214	1582	6956										
KRT6C	286887	bcgsc.ca	37	chr12	52863507	52863507	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gtggcgatctccacatccagGgccagcttgacattcatcag	10	13	3	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	KRT6C-114	NM_173086	exon7	c.C1371A	p.A457A	ATCCAGGGCCAGC	.	171	127	142	3	.	0	0	0	0	0	T	52863507	G	T	52863507	2	4	31	1	0	0	0	0	0	0	0	1	8503	1219	43	3		3	KRT6C	12	52863507	Silent	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	2667826	52863507	80988388	1583	6957										
KRT74	121391	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	52967215	52967215	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ccaagaggctcttgttgacaGtgacctggtggatgccccca	12	12	1	3	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	KRT74-92	NM_175053	exon1	c.C347T	p.T116I	TTGACAGTGACCT	.	103	49	122	0	.	0	0	0	0	0	A	52967215	G	A	52967215	3	1	31	1	0	0	0	0	1	0	0	0	8508	1029	36	3	1278	3	KRT74	12	52967215	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	103708	52967215	80884680	1584	6958										
KRT73	319101	ucsc.edu;bcgsc.ca	37	chr12	53012266	53012266	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ggagcagccgctgaagccccCcttggcagcagctcccgact	12	17	0	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	KRT73-157	NM_175068	exon1	c.G43T	p.G15W	AGCCCCCCTTGGC	.	182	125	173	3	.	0	0	0	0	0	A	53012266	C	A	53012266	3	1	31	1	0	0	0	0	1	0	0	0	8507	623	22	3	1615	3	KRT73	12	53012266	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	45051	53012266	80839629	1585	6959										
IGFBP6	3489	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	53494882	53494882	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	aactccagactgaggtctacCgaggggctcaaacactctac	9	13	3	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	IGFBP6-523	NM_002178	exon3	c.C538T	p.R180X	GTCTACCGAGGGG	.	125	84	135	0	.	0	0	0	0	0	T	53494882	C	T	53494882	4	4	31	1	0	0	0	0	0	1	0	0	7604	644	23	1	548	1	IGFBP6	12	53494882	Nonsense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	482616	53494882	80357013	1586	6960										
ERBB3	2065	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	56487188	56487188	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cacatctctgggcttccgatCcctgaaggaaattagtgctg	10	11	1	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ERBB3-1403	NM_001982	exon12	c.C1334T	p.S445F	TCCGATCCCTGAA	.	115	27	94	0	.	0	0	0	0	0	T	56487188	C	T	56487188	3	4	31	1	0	0	0	0	1	0	0	0	5221	855	30	3	1511	3	ERBB3	12	56487188	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	2992306	56487188	77364707	1587	6961										
GNS	2799	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	65122777	65122777	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cccatccatctgtgtcttatTtaggtcgtagccagcaatgt	8	11	2	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GNS-514	NM_002076	exon10	c.A1159T	p.N387Y	TCTTATTTAGGTC	.	128	72	123	0	.	0	0	0	0	0	A	65122777	T	A	65122777	3	1	31	1	0	0	0	0	1	0	0	0	6570	1841	64	5	519	5	GNS	12	65122777	Missense_Mutation	SNP	T	TCGA-OR-A5KB-01A-11D-A30A-10	8635589	65122777	68729118	1588	6962										
GRIP1	23426	ucsc.edu;bcgsc.ca	37	chr12	66838367	66838367	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	agatgatatgattatacctgCaacatcaaactcgatttcca	5	9	1	3	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GRIP1-494	NM_001178074	exon12	c.G1528C	p.A510P	TACCTGCAACATC	.	142	78	156	4	.	0	0	0	0	0	G	66838367	C	G	66838367	3	3	31	1	0	0	0	0	1	0	0	0	6808	710	25	3	1754	3	GRIP1	12	66838367	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	1715590	66838367	67013528	1589	6963										
CAND1	55832	broad.mit.edu;mdanderson.org	37	chr12	67675711	67675711	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tttatggctacaaatgatttGatgacggaactgcagaaaga	10	5	0	5	rs79653663	alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CAND1-516	NM_018448	exon2	c.G90C	p.L30F	TGATTTGATGACG	.	20	8	29	0	.	0	0	0	0	0	C	67675711	G	C	67675711	3	2	31	1	0	0	0	0	1	0	0	0	2621	1281	45	3	96	3	CAND1	12	67675711	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	837344	67675711	66176184	1590	6964										
LGR5	8549	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	71972663	71972663	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	acttaaaattaacaggaaatCatgccttacagagcttgata	6	7	1	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	LGR5-527	NM_003667	exon15	c.C1360G	p.H454D	GGAAATCATGCCT	.	99	61	116	0	.	0	0	0	0	0	G	71972663	C	G	71972663	3	3	31	1	0	0	0	0	1	0	0	0	8780	826	29	3	1418	3	LGR5	12	71972663	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	4296952	71972663	61879232	1591	6965										
LGR5	8549	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	71978418	71978418	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	acctttaccagctccagcatCacttatgacctgcctcccag	5	17	1	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	LGR5-527	NM_003667	exon18	c.C2628G	p.I876M	CAGCATCACTTAT	.	82	46	78	0	.	0	0	0	0	0	G	71978418	C	G	71978418	3	3	31	1	0	0	0	0	1	0	0	0	8780	816	29	3	2698	3	LGR5	12	71978418	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	5755	71978418	61873477	1592	6966										
TRHDE	29953	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	72680494	72680494	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	actcagttttcgcctacacaTgccagaaaggcatttccttg	7	12	1	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TRHDE-93	NM_013381	exon2	c.T813G	p.H271Q	TACACATGCCAGA	.	107	67	128	0	.	0	0	0	0	0	G	72680494	T	G	72680494	3	3	31	1	0	0	0	0	1	0	0	0	16517	1461	51	5	819	5	TRHDE	12	72680494	Missense_Mutation	SNP	T	TCGA-OR-A5KB-01A-11D-A30A-10	702076	72680494	61171401	1593	6967										
SLC6A15	55117	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	85255765	85255765	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	accagtccccatgttggataGctcagaaattcttcagatgc	8	11	3	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SLC6A15-93	NM_182767	exon12	c.C1839G	p.S613R	TGGATAGCTCAGA	.	42	18	97	0	.	0	0	0	0	0	C	85255765	G	C	85255765	3	2	31	1	0	0	0	0	1	0	0	0	14713	962	34	3	357	3	SLC6A15	12	85255765	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	12575271	85255765	48596130	1594	6968										
TMPO	7112	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	98940166	98940166	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	aaaacagaggaaagaagagtAgaaagggatattcttaagga	12	2	1	4	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TMPO-93	NM_001032283	exon8	c.A1020G	p.V340V	AAGAGTAGAAAGG	.	105	61	118	0	.	0	0	0	0	0	G	98940166	A	G	98940166	2	3	31	1	0	0	0	0	0	0	0	1	16274	407	15	4		4	TMPO	12	98940166	Silent	SNP	A	TCGA-OR-A5KB-01A-11D-A30A-10	13684401	98940166	34911729	1595	6969										
SLC5A8	160728	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr12	101603553	101603553	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	agtagatgccgatggcggccGagatgaccagcatgcccgcg	15	12	0	3	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SLC5A8-90	NM_145913	exon1	c.C74A	p.S25X	GCGGCCGAGATGA	.	94	68	57	0	.	0	0	0	0	0	T	101603553	G	T	101603553	4	4	31	1	0	0	0	0	0	1	0	0	14706	1059	37	2	1818	2	SLC5A8	12	101603553	Nonsense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	2663387	101603553	32248342	1596	6970										
MYBPC1	4604	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	102055036	102055037	+	Missense_Mutation	DNP	CC	CC	AA													0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tacgacggaggctctccaatCctaggtaactgcatgttggt					novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	CC	CC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MYBPC1-94	NM_206819	exon20	c.C2029A	p.L652I	CCAATCCTAGGTA	.	54	10	87	0	.	0	0	0	0	0	AA	102055037	CC	AA	102055036	3	1	31	1	0	0	0	0	1	0	0	0	10039	845	30	3	2106	3	MYBPC1	12	102055036	Missense_Mutation	DNP	CC	TCGA-OR-A5KB-01A-11D-A30A-10	451483	102055036	31796859	1597	6971										
ALDH1L2	160428	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	105424132	105424132	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	atttagaaatgaccataataGgcccaaaggattcctctttg	7	8	1	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ALDH1L2-91	NM_001034173	exon21	c.C2486A	p.P829H	ATAATAGGCCCAA	.	84	54	82	0	.	0	0	0	0	0	T	105424132	G	T	105424132	3	4	31	1	0	0	0	0	1	0	0	0	495	1000	35	3	297	3	ALDH1L2	12	105424132	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	3369096	105424132	28427763	1598	6972										
BTBD11	121551	broad.mit.edu;bcgsc.ca	37	chr12	108003971	108003971	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ctcttcccttccttagggccGacgactgcttttgtgcatct	8	14	2	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	BTBD11-93	NM_001018072	exon5	c.G1648T	p.D550Y	AGGGCCGACGACT	.	120	92	120	2	.	0	0	0	0	0	T	108003971	G	T	108003971	3	4	31	1	0	0	0	0	1	0	0	0	1542	1058	37	2	1771	2	BTBD11	12	108003971	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	2579839	108003971	25847924	1599	6973										
TRPV4	59341	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	110231758	110231758	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ggtgaagaagaacaggacccCagtgaagagcgtaatgacct	13	8	0	6	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TRPV4-94	NM_021625	exon9	c.G1561T	p.G521W	GGACCCCAGTGAA	.	241	182	251	0	.	0	0	0	0	0	A	110231758	C	A	110231758	3	1	31	1	0	0	0	0	1	0	0	0	16636	594	21	3	1086	3	TRPV4	12	110231758	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	2227787	110231758	23620137	1600	6974										
PPP1CC	5501	bcgsc.ca	37	chr12	111160003	111160003	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cctgcattgtcaaactctccGcaataattgggcgcagaaaa	8	11	2	1	rs1973505	byfrequency	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PPP1CC-1082	NM_002710	exon6	c.C819T	p.C273C	CTCTCCGCAATAA	.	129	8	148	2	G|0.770;A|0.230	0	0	0	0	0	A	111160003	G	A	111160003	2	1	31	1	0	0	0	0	0	0	0	1	12383	1079	38	1		1	PPP1CC	12	111160003	Silent	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	928245	111160003	22691892	1601	6975										
ACAD10	80724	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	112130583	112130583	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gaacagccttcctgaaacacAcccagcgcaggcaccagggg	11	15	0	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ACAD10-92	NM_001136538	exon2	c.A70C	p.T24P	AAACACACCCAGC	.	124	77	96	2	.	0	0	0	0	0	C	112130583	A	C	112130583	3	2	31	1	0	0	0	0	1	0	0	0	108	159	6	5	72	5	ACAD10	12	112130583	Missense_Mutation	SNP	A	TCGA-OR-A5KB-01A-11D-A30A-10	970580	112130583	21721312	1602	6976										
RPH3A	22895	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	113304642	113304642	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	aaaatctgcattgagcagagGgaggtgagtgccctggtccc	14	9	1	3	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	RPH3A-519	NM_001143854	exon7	c.G441A	p.R147R	GCAGAGGGAGGTG	.	133	88	123	0	.	0	0	0	0	0	A	113304642	G	A	113304642	2	1	31	1	0	0	0	0	0	0	0	1	13586	1223	43	3		3	RPH3A	12	113304642	Silent	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	1174059	113304642	20547253	1603	6977										
TBX5	6910	ucsc.edu;bcgsc.ca	37	chr12	114793514	114793514	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	accacaggctggtgggccacGgaggtctggtgctggaacat	16	10	1	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TBX5-98	NM_000192	exon9	c.C1380A	p.S460S	GGCCACGGAGGTC	.	172	114	163	2	.	0	0	0	0	0	T	114793514	G	T	114793514	2	4	31	1	0	0	0	0	0	0	0	1	15698	1103	39	2		2	TBX5	12	114793514	Silent	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	1488872	114793514	19058381	1604	6978										
TBX3	6926	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr12	115112157	115112157	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ccatgctggagaaggcgcccCccatggcaaactggctgggg	15	13	0	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TBX3-93	NM_016569	exon7	c.G1583C	p.G528A	GCGCCCCCCATGG	.	103	49	57	0	.	0	0	0	0	0	G	115112157	C	G	115112157	3	3	31	1	0	0	0	0	1	0	0	0	15696	623	22	3	656	3	TBX3	12	115112157	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	318643	115112157	18739738	1605	6979										
MED13L	23389	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr12	116444164	116444165	+	Frame_Shift_Ins	INS	-	-	C													0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	atttttcccatcaggcaccgINSgcgtggaatgacctggtgta					novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MED13L-232	NM_015335	exon12	c.2291_2292insG	p.P764fs	GGCACCGGCGTGG	.	127	77	157	0	.	0	0	0	0	0	C	116444165	-	C	116444164	7	5	31	1	0	1	1	0	0	0	0	0	9459	1116	39	0	4421	0	MED13L	12	116444164	Frame_Shift_Ins	INS	-	TCGA-OR-A5KB-01A-11D-A30A-10	1332007	116444164	17407731	1606	6980										
RNFT2	84900	bcgsc.ca	37	chr12	117274029	117274029	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gcagcagtgcacagaagctgGtgacatctgcgccatctgtc	12	12	2	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_001109903	exon10	c.G1142T	p.G381V	AAGCTGGTGACAT	.	69	51	78	2	.	0	0	0	0	0	T	117274029	G	T	117274029	3	4	31	1	0	0	0	0	1	0	0	0	13537	1261	44	3	1176	3	RNFT2	12	117274029	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	829865	117274029	16577866	1607	6981										
NOS1	4842	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	117768276	117768276	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tgagcagttcattgttctccCctctgccttggaggctgact	10	12	3	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	NOS1-154	NM_000620	exon2	c.G599T	p.G200V	TTCTCCCCTCTGC	.	91	49	95	1	.	0	0	0	0	0	A	117768276	C	A	117768276	3	1	31	1	0	0	0	0	1	0	0	0	10570	623	22	3	3817	3	NOS1	12	117768276	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	494247	117768276	16083619	1608	6982										
SUDS3	64426	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	118841234	118841234	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cagcatctccatcctctcctGagcacttgcctgcaacaccc	5	19	2	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SUDS3-90	NM_022491	exon10	c.G715T	p.E239X	TCTCCTGAGCACT	.	50	34	41	0	.	0	0	0	0	0	T	118841234	G	T	118841234	4	4	31	1	0	0	0	0	0	1	0	0	15404	1291	45	3	753	3	SUDS3	12	118841234	Nonsense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	1072958	118841234	15010661	1609	6983										
SRRM4	84530	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr12	119594333	119594333	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cccatcccctactatcggccCagcccctcctcatccggcag	6	22	1	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SRRM4-2	NM_194286	exon13	c.C1566A	p.P522P	TCGGCCCAGCCCC	.	205	119	176	1	.	0	0	0	0	0	A	119594333	C	A	119594333	2	1	31	1	0	0	0	0	0	0	0	1	15208	581	21	3		3	SRRM4	12	119594333	Silent	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	753099	119594333	14257562	1610	6984										
CCDC60	160777	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	119926594	119926594	+	Silent	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ttccgccagctctgtgctctCcactggcttctggaggccct	10	16	3	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CCDC60-93	NM_178499	exon5	c.C480A	p.L160L	TGCTCTCCACTGG	.	300	218	236	0	.	0	0	0	0	0	A	119926594	C	A	119926594	2	1	31	1	0	0	0	0	0	0	0	1	2837	842	30	3		3	CCDC60	12	119926594	Silent	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	332261	119926594	13925301	1611	6985										
WDR66	144406	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	122413555	122413555	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ctgtcagagcttccttttgtCatgagagcaattggctttta	9	8	2	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	WDR66-92	NM_144668	exon19	c.C2970T	p.V990V	TTTTGTCATGAGA	.	160	32	112	0	.	0	0	0	0	0	T	122413555	C	T	122413555	2	4	31	1	0	0	0	0	0	0	0	1	17355	813	29	3		3	WDR66	12	122413555	Silent	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	2486961	122413555	11438340	1612	6986										
DNAH10	196385	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	124335466	124335466	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ggagatttccctggactcccGcatgggcatcttcatcacca	9	14	3	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DNAH10-95	NM_207437	exon34	c.G5780T	p.R1927L	ACTCCCGCATGGG	.	98	74	79	0	.	0	0	0	0	0	T	124335466	G	T	124335466	3	4	31	1	0	0	0	0	1	0	0	0	4609	1087	38	2	5914	2	DNAH10	12	124335466	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	1921911	124335466	9516429	1613	6987										
TMEM132B	114795	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	126135311	126135311	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	agtaccagcacgccacagtgCgtgtcctcacccagtttgtg	10	14	1	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TMEM132B-185	NM_052907	exon7	c.C1711A	p.R571S	ACAGTGCGTGTCC	.	257	182	241	2	.	0	0	0	0	0	A	126135311	C	A	126135311	3	1	31	1	0	0	0	0	1	0	0	0	16083	768	27	2	1737	2	TMEM132B	12	126135311	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	1799845	126135311	7716584	1614	6988										
POLE	5426	bcgsc.ca	37	chr12	133252041	133252041	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	actccccctggctgtccttcTggaagcctatctcctgctgc	8	17	2	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	POLE-233	NM_006231	exon12	c.A1169G	p.Q390R	TCCTTCTGGAAGC	.	89	56	79	3	.	0	0	0	0	0	C	133252041	T	C	133252041	3	2	31	1	0	0	0	0	1	0	0	0	12225	1580	55	4	5843	4	POLE	12	133252041	Missense_Mutation	SNP	T	TCGA-OR-A5KB-01A-11D-A30A-10	7116730	133252041	599854	1615	6989										
RNF17	56163	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr13	25363494	25363494	+	Silent	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tttaaattctagattatccgGactttgcagttaacttcaga	6	7	2	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	RNF17-228	NM_001184993	exon8	c.G792T	p.R264R	TATCCGGACTTTG	.	61	21	120	0	.	0	0	0	0	0	T	25363494	G	T	25363494	2	4	31	1	0	0	0	0	0	0	0	1	13496	1161	41	3		3	RNF17	13	25363494	Silent	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10		25363494	89806384	1616	6990										
CDK8	1024	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr13	26923272	26923272	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	aggtgtttctgtctcatgctGataggaaggtgtggcttctg	14	6	3	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CDK8-1023	NM_001260	exon3	c.G268T	p.D90Y	CATGCTGATAGGA	.	93	33	127	0	.	0	0	0	0	0	T	26923272	G	T	26923272	3	4	31	1	0	0	0	0	1	0	0	0	3156	1290	45	3	278	3	CDK8	13	26923272	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	1559778	26923272	88246606	1617	6991										
MTUS2	23281	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr13	29599201	29599201	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	agaggcacagatagcctgcaGaccacgcggagtattcaggg	14	10	1	3	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MTUS2-218	NM_001033602	exon1	c.G396T	p.Q132H	CCTGCAGACCACG	.	86	34	153	0	.	0	0	0	0	0	T	29599201	G	T	29599201	3	4	31	1	0	0	0	0	1	0	0	0	9994	933	33	3	398	3	MTUS2	13	29599201	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	2675929	29599201	85570677	1618	6992										
MTUS2	23281	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr13	29599429	29599429	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ccgcagcatccacagcctctAtccctcgactcccgggaagc	8	19	1	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MTUS2-218	NM_001033602	exon1	c.A624G	p.L208L	GCCTCTATCCCTC	.	59	26	96	1	.	0	0	0	0	0	G	29599429	A	G	29599429	2	3	31	1	0	0	0	0	0	0	0	1	9994	436	16	4		4	MTUS2	13	29599429	Silent	SNP	A	TCGA-OR-A5KB-01A-11D-A30A-10	228	29599429	85570449	1619	6993										
MTUS2	23281	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr13	29600623	29600623	+	Silent	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	aagaacacttgccccagtggGatccccaagcctgtcttcac	8	15	2	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MTUS2-218	NM_001033602	exon1	c.G1818T	p.G606G	CAGTGGGATCCCC	.	74	23	122	0	.	0	0	0	0	0	T	29600623	G	T	29600623	2	4	31	1	0	0	0	0	0	0	0	1	9994	1161	41	3		3	MTUS2	13	29600623	Silent	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	1194	29600623	85569255	1620	6994										
MTUS2	23281	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr13	30054476	30054476	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gcacggtgaccagctgctgaGcatccggtgtcaacaccagg	13	13	1	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MTUS2-218	NM_001033602	exon8	c.G3404C	p.S1135T	TGCTGAGCATCCG	.	112	40	180	0	.	0	0	0	0	0	C	30054476	G	C	30054476	3	2	31	1	0	0	0	0	1	0	0	0	9994	971	34	3	3492	3	MTUS2	13	30054476	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	453853	30054476	85115402	1621	6995										
DCLK1	9201	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr13	36699966	36699966	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gtgtagattgttctcactccCtggggcaaattcacgttatc	9	10	2	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DCLK1-826	NM_004734	exon2	c.G309T	p.Q103H	CACTCCCTGGGGC	.	111	31	155	0	.	0	0	0	0	0	A	36699966	C	A	36699966	3	1	31	1	0	0	0	0	1	0	0	0	4297	680	24	3	1948	3	DCLK1	13	36699966	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	6645490	36699966	78469912	1622	6996										
SMAD9	4093	broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr13	37427574	37427574	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	accttaacaaaactcatccgGatagtacacatcttggtcag	6	11	3	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SMAD9-414	NM_001127217	exon6	c.C1242T	p.I414I	CATCCGGATAGTA	.	45	12	69	0	.	0	0	0	0	0	A	37427574	G	A	37427574	2	1	31	1	0	0	0	0	0	0	0	1	14799	1164	41	3		3	SMAD9	13	37427574	Silent	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	727608	37427574	77742304	1623	6997										
EXOSC8	11340	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr13	37582275	37582275	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gaaaagttatttgaatattaGaactcatccagttgcaactt	6	6	1	2	rs200992929	alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	EXOSC8-91	NM_181503	exon9	c.G569T	p.R190I	ATATTAGAACTCA	.	45	6	107	0	G|1.000;A|0.000	0	0	0	0	0	T	37582275	G	T	37582275	3	4	31	1	0	0	0	0	1	0	0	0	5333	942	33	3	603	3	EXOSC8	13	37582275	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	154701	37582275	77587603	1624	6998										
FREM2	341640	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr13	39264618	39264618	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gtctcaagaatggagaattgGtggcaatactatccaaggag	12	6	1	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FREM2-100	NM_207361	exon1	c.G3137T	p.G1046V	GAATTGGTGGCAA	.	53	21	96	0	.	0	0	0	0	0	T	39264618	G	T	39264618	3	4	31	1	0	0	0	0	1	0	0	0	6064	1261	44	3	3139	3	FREM2	13	39264618	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	1682343	39264618	75905260	1625	6999										
NAA16	79612	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr13	41932560	41932560	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tattaatgctgcaattgctaGtactccaactctaatagaat	5	8	1	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	NAA16-90	NM_001110798	exon11	c.G1208T	p.S403I	TTGCTAGTACTCC	.	50	13	100	0	.	0	0	0	0	0	T	41932560	G	T	41932560	3	4	31	1	0	0	0	0	1	0	0	0	10147	1029	36	3	1250	3	NAA16	13	41932560	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	2667942	41932560	73237318	1626	7000										
ENOX1	55068	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr13	43896519	43896519	+	Splice_Site	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tgtggcagttatcggcattaCctgattcatcgactctcatt	8	10	2	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ENOX1-92	NM_001242863	exon12	c.1261+1G>T	.	GCATTACCTGATT	.	73	28	188	0	.	0	0	0	0	0	A	43896519	C	A	43896519	5	1	31	1	0	0	0	0	0	0	1	0	5139	521	18	3	697	3	ENOX1	13	43896519	Splice_Site	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	1963959	43896519	71273359	1627	7001										
TSC22D1	8848	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr13	45147767	45147767	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	taactgcaggcaactgctgtGaaacaattccttgagctact	8	10	0	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TSC22D1-90	NM_183422	exon1	c.C2444T	p.S815L	TGCTGTGAAACAA	.	86	28	171	0	.	0	0	0	0	0	A	45147767	G	A	45147767	3	1	31	1	0	0	0	0	1	0	0	0	16645	1294	45	3	918	3	TSC22D1	13	45147767	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	1251248	45147767	70022111	1628	7002										
LRCH1	23143	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr13	47297444	47297444	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cagatgagagaagagaaagaGctggtggaacaacttcgtga	14	5	0	6	rs188820612	alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	LRCH1-91	NM_001164211	exon17	c.G1848T	p.E616D	GAAAGAGCTGGTG	.	30	11	62	0	G|0.999;A|0.000	0	0	0	0	0	T	47297444	G	T	47297444	3	4	31	1	0	0	0	0	1	0	0	0	8959	962	34	3	1914	3	LRCH1	13	47297444	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	2149677	47297444	67872434	1629	7003										
HTR2A	3356	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr13	47469863	47469863	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	agagacacgacggtgagaggCacccttcacaggaaaggttg	14	9	1	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	HTR2A-519	NM_000621	exon2	c.G179T	p.C60F	GAGAGGCACCCTT	.	129	36	190	0	.	0	0	0	0	0	A	47469863	C	A	47469863	3	1	31	1	0	0	0	0	1	0	0	0	7462	710	25	3	1248	3	HTR2A	13	47469863	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	172419	47469863	67700015	1630	7004										
ITM2B	9445	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr13	48830474	48830474	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	atcagtgtgcctgtcccagaGtttgcagatagtgatcctgc	11	10	1	3	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ITM2B-90	NM_021999	exon3	c.G408T	p.E136D	CCCAGAGTTTGCA	.	53	12	82	0	.	0	0	0	0	0	T	48830474	G	T	48830474	3	4	31	1	0	0	0	0	1	0	0	0	7934	1020	36	3	418	3	ITM2B	13	48830474	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	1360611	48830474	66339404	1631	7005										
ARL11	115761	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr13	50205070	50205070	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ccctcactggggaggggctgCccgaggccctgcagagcctg	16	15	1	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ARL11-90	NM_138450	exon2	c.C487G	p.P163A	GGGCTGCCCGAGG	.	65	26	89	1	.	0	0	0	0	0	G	50205070	C	G	50205070	3	3	31	1	0	0	0	0	1	0	0	0	927	739	26	3	489	3	ARL11	13	50205070	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	1374596	50205070	64964808	1632	7006										
DLEU7	220107	hgsc.bcm.edu	37	chr13	51417472	51417472	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tgcagggcccgcggtcccggGggaagggcagcaactcggcg	19	13	0	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_198989	exon1	c.C311T	p.P104L	TCCCGGGGGAAGG	.	31	16	0	0	.	0	0	0	0	0	A	51417472	G	A	51417472	3	1	31	1	0	0	0	0	1	0	0	0	4564	1232	43	3	179	3	DLEU7	13	51417472	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	1212402	51417472	63752406	1633	7007										
DLEU7	220107	hgsc.bcm.edu	37	chr13	51417535	51417535	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cctcctcctctggggagttcGcccgcgccgcggtccgccga	13	19	1	0	rs898861		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_198989	exon1	c.C248T	p.A83V	GAGTTCGCCCGCG	.	9	7	0	0	G|0.789;A|0.211	0	0	0	0	0	A	51417535	G	A	51417535	3	1	31	1	0	0	0	0	1	0	0	0	4564	1087	38	1	242	1	DLEU7	13	51417535	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	63	51417535	63752343	1634	7008										
PCDH8	5100	broad.mit.edu;bcgsc.ca	37	chr13	53420741	53420741	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gccattggctggcgccgggtGcaccaggactggcgcatggt	17	12	0	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PCDH8-153	NM_002590	exon1	c.C1831A	p.H611N	CCGGGTGCACCAG	.	102	28	84	1	.	0	0	0	0	0	T	53420741	G	T	53420741	3	4	31	1	0	0	0	0	1	0	0	0	11546	1319	46	3	1393	3	PCDH8	13	53420741	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	2003206	53420741	61749137	1635	7009										
PCDH8	5100	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr13	53422274	53422274	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gaaggccagcacgcactgcgGggcctggccacacagccgct	14	16	0	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PCDH8-153	NM_002590	exon1	c.C298A	p.P100T	ACTGCGGGGCCTG	.	68	21	20	0	.	0	0	0	0	0	T	53422274	G	T	53422274	3	4	31	1	0	0	0	0	1	0	0	0	11546	1232	43	3	2926	3	PCDH8	13	53422274	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	1533	53422274	61747604	1636	7010										
OLFM4	10562	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr13	53624443	53624443	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	agttaacctgaccaccaacaCgattgctgtgactcaaactc	6	13	1	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OLFM4-69	NM_006418	exon5	c.C1070A	p.T357K	CCAACACGATTGC	.	203	54	291	1	.	0	0	0	0	0	A	53624443	C	A	53624443	3	1	31	1	0	0	0	0	1	0	0	0	10884	536	19	2	1088	2	OLFM4	13	53624443	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	202169	53624443	61545435	1637	7011										
PCDH17	27253	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr13	58208469	58208469	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	acgacaccgcggagctgcagGtgccgcgcaacgctggcctg	15	15	0	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PCDH17-97	NM_001040429	exon1	c.G1789T	p.V597L	CTGCAGGTGCCGC	.	107	32	122	1	.	0	0	0	0	0	T	58208469	G	T	58208469	3	4	31	1	0	0	0	0	1	0	0	0	11541	1261	44	3	1791	3	PCDH17	13	58208469	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	4584026	58208469	56961409	1638	7012										
PCDH17	27253	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr13	58208760	58208760	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cccttcccgagggggtaccaCgggtgaatggcgagcagcac	15	13	0	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PCDH17-97	NM_001040429	exon1	c.C2080G	p.R694G	GTACCACGGGTGA	.	164	41	254	0	.	0	0	0	0	0	G	58208760	C	G	58208760	3	3	31	1	0	0	0	0	1	0	0	0	11541	527	19	2	2082	2	PCDH17	13	58208760	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	291	58208760	56961118	1639	7013										
PCDH17	27253	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr13	58240856	58240856	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	acagtgggcacggggacagtGatcaggctgacagtgaccaa	15	9	1	3	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PCDH17-97	NM_001040429	exon3	c.G2686T	p.D896Y	GACAGTGATCAGG	.	119	42	174	0	.	0	0	0	0	0	T	58240856	G	T	58240856	3	4	31	1	0	0	0	0	1	0	0	0	11541	1290	45	3	2696	3	PCDH17	13	58240856	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	32096	58240856	56929022	1640	7014										
PCDH9	5101	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr13	67205483	67205483	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cggctcatggtctcctagacCactgtcactgcagctttcct	8	15	3	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PCDH9-96	NM_203487	exon4	c.G3199T	p.G1067C	CTAGACCACTGTC	.	64	17	129	0	.	0	0	0	0	0	A	67205483	C	A	67205483	3	1	31	1	0	0	0	0	1	0	0	0	11547	594	21	3	522	3	PCDH9	13	67205483	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	8964627	67205483	47964395	1641	7015										
KLHL1	57626	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr13	70281793	70281794	+	Missense_Mutation	DNP	CA	CA	AG													0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gtttgtgggtcataggattcCatagtgttgaggtatgtctg					novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	CA	CA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	KLHL1-90	NM_020866	exon10	c.T2150C	p.M717T	GATTCCATAGTGT	.	92	0	150	0	.	0	0	0	0	0	AG	70281794	CA	AG	70281793	3	1	31	1	0	0	0	0	1	0	0	0	8386	594	21	3	103	3	KLHL1	13	70281793	Missense_Mutation	DNP	CA	TCGA-OR-A5KB-01A-11D-A30A-10	3076310	70281793	44888085	1642	7016										
KLHL1	57626	bcgsc.ca	37	chr13	70681347	70681347	+	Frame_Shift_Del	DEL	C	C	-													0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tactgtacctgtgtccacatCcttcacctgttgcctggcta					novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	KLHL1-90	NM_020866	exon1	c.485delG	p.G162fs	CCACATCCTTCAC	.	147	43	175	1	.	0	0	0	0	0	-	70681347	C	-	70681347	7	5	31	1	0	1	0	1	0	0	0	0	8386	855	30	0	1805	0	KLHL1	13	70681347	Frame_Shift_Del	DEL	C	TCGA-OR-A5KB-01A-11D-A30A-10	399554	70681347	44488531	1643	7017	70	3								
KLHL1	57626	hgsc.bcm.edu	37	chr13	70681348	70681349	+	Frame_Shift_Del	DEL	CT	CT	-													0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	actgtacctgtgtccacatcCttcacctgttgcctggctag					novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	CT	CT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	KLHL1-90	NM_020866	exon1	c.483_484del	p.161_162del	CACATCCTTCACC	.	148	0	174	0	.	0	0	0	0	0	-	70681349	CT	-	70681348	7	5	31	1	0	1	0	1	0	0	0	0	8386	690	24	0	1806	0	KLHL1	13	70681348	Frame_Shift_Del	DEL	CT	TCGA-OR-A5KB-01A-11D-A30A-10	1	70681348	44488530	1644	7018	70	3								
KLHL1	57626	bcgsc.ca	37	chr13	70681349	70681349	+	Missense_Mutation	SNP	T	T	A													0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ctgtacctgtgtccacatccTtcacctgttgcctggctaga					novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	KLHL1-90	NM_020866	exon1	c.A483T	p.E161D	ACATCCTTCACCT	.	147	43	175	1	.	0	0	0	0	0	A	70681349	T	A	70681349	3	1	31	1	0	0	0	0	1	0	0	0	8386	1606	56	5	1807	5	KLHL1	13	70681349	Missense_Mutation	SNP	T	TCGA-OR-A5KB-01A-11D-A30A-10	1	70681349	44488529	1645	7019	70	3								
DACH1	1602	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr13	72063190	72063191	+	Missense_Mutation	DNP	GG	GG	AT													0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	caggaaacagaaaaggagatGgaaaacctggaggcagtggt					novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	GG	GG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DACH1-135	NM_080759	exon7	c.C1666A	p.P608I	GAGATGGAAAACC	.	56	0	110	0	.	0	0	0	0	0	AT	72063191	GG	AT	72063190	3	1	31	1	0	0	0	0	1	0	0	0	4226	1348	47	3	479	3	DACH1	13	72063190	Missense_Mutation	DNP	GG	TCGA-OR-A5KB-01A-11D-A30A-10	1381841	72063190	43106688	1646	7020										
TBC1D4	9882	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr13	75915278	75915278	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cacagaagggccttccccgaTgtgcacgtgtgtcttctgct	11	13	2	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TBC1D4-95	NM_014832	exon7	c.A1594G	p.I532V	CCCCGATGTGCAC	.	106	28	133	0	.	0	0	0	0	0	C	75915278	T	C	75915278	3	2	31	1	0	0	0	0	1	0	0	0	15659	1464	51	4	2362	4	TBC1D4	13	75915278	Missense_Mutation	SNP	T	TCGA-OR-A5KB-01A-11D-A30A-10	3852088	75915278	39254600	1647	7021										
MYCBP2	23077	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr13	77870754	77870754	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cttgcttcttgtcttcacttTtgatttgctcttctgttttc	5	10	5	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MYCBP2-236	NM_015057	exon2	c.A358G	p.K120E	TCACTTTTGATTT	.	13	4	22	0	.	0	0	0	0	0	C	77870754	T	C	77870754	3	2	31	1	0	0	0	0	1	0	0	0	10046	1850	64	4	14006	4	MYCBP2	13	77870754	Missense_Mutation	SNP	T	TCGA-OR-A5KB-01A-11D-A30A-10	1955476	77870754	37299124	1648	7022										
EDNRB	1910	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr13	78492683	78492683	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ccagcgcaaccagggcgcgtCcgcacagacttggaggcggc	15	15	0	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	EDNRB-522	NM_001201397	exon2	c.G296C	p.G99A	GCGCGTCCGCACA	.	79	24	93	0	.	0	0	0	0	0	G	78492683	C	G	78492683	3	3	31	1	0	0	0	0	1	0	0	0	4931	855	30	3	1451	3	EDNRB	13	78492683	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	621929	78492683	36677195	1649	7023										
POU4F1	5457	bcgsc.ca;mdanderson.org	37	chr13	79176516	79176516	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tggtggtggtggtggtgcgcCagaggcaccgtggaagtgga	21	6	0	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	POU4F1-515	NM_006237	exon2	c.G294T	p.L98L	GTGCGCCAGAGGC	.	54	21	39	1	.	0	0	0	0	0	A	79176516	C	A	79176516	2	1	31	1	0	0	0	0	0	0	0	1	12307	581	21	3		3	POU4F1	13	79176516	Silent	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	683833	79176516	35993362	1650	7024										
RNF219	79596	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr13	79191112	79191112	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	attcatagcttctttctcttCacttgaattttttagctgtg	5	8	4	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	RNF219-135	NM_024546	exon6	c.G784T	p.E262X	TCTCTTCACTTGA	.	73	18	107	0	.	0	0	0	0	0	A	79191112	C	A	79191112	4	1	31	1	0	0	0	0	0	1	0	0	13517	835	29	3	1400	3	RNF219	13	79191112	Nonsense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	14596	79191112	35978766	1651	7025										
SLITRK1	114798	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr13	84455469	84455469	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	agaaataaatggtaaaactgGgaagtcggggcagtgaaacg	14	4	0	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SLITRK1-94	NM_052910	exon1	c.C174A	p.S58S	AAACTGGGAAGTC	.	37	9	70	0	.	0	0	0	0	0	T	84455469	G	T	84455469	2	4	31	1	0	0	0	0	0	0	0	1	14777	1219	43	3		3	SLITRK1	13	84455469	Silent	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	5264357	84455469	30714409	1652	7026										
SLITRK6	84189	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr13	86368998	86368998	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cctttttgtcgagatgcccgGgggaagtgcagaggatgtca	15	8	1	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SLITRK6-137	NM_032229	exon2	c.C1646A	p.P549H	TGCCCGGGGGAAG	.	84	14	132	0	.	0	0	0	0	0	T	86368998	G	T	86368998	3	4	31	1	0	0	0	0	1	0	0	0	14782	1232	43	3	883	3	SLITRK6	13	86368998	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	1913529	86368998	28800880	1653	7027										
GPC5	2262	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr13	92051320	92051320	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gatggacgcacagacctggcCcgtgggctttcgctgcctcc	13	15	0	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GPC5-519	NM_004466	exon1	c.C20A	p.P7H	CCTGGCCCGTGGG	.	115	26	100	0	.	0	0	0	0	0	A	92051320	C	A	92051320	3	1	31	1	0	0	0	0	1	0	0	0	6621	623	22	3	22	3	GPC5	13	92051320	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	5682322	92051320	23118558	1654	7028										
GPC5	2262	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr13	92345810	92345810	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tctgcaggcactcaatctggGcattgaagtcatcaacacca	8	12	5	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GPC5-519	NM_004466	exon3	c.G695T	p.G232V	ATCTGGGCATTGA	.	70	21	125	0	.	0	0	0	0	0	T	92345810	G	T	92345810	3	4	31	1	0	0	0	0	1	0	0	0	6621	1203	42	3	705	3	GPC5	13	92345810	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	294490	92345810	22824068	1655	7029										
DCT	1638	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr13	95121092	95121092	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gcggctgggttccattgggcCcaagcaggcccagccagtgt	15	13	0	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DCT-94	NM_001129889	exon2	c.G503T	p.G168V	TTGGGCCCAAGCA	.	69	17	101	0	.	0	0	0	0	0	A	95121092	C	A	95121092	3	1	31	1	0	0	0	0	1	0	0	0	4310	623	22	3	1191	3	DCT	13	95121092	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	2775282	95121092	20048786	1656	7030										
HS6ST3	266722	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr13	96743551	96743551	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gatttcaacatcaaagggcgCgacgtgatcgtgttcctcca	10	11	2	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	HS6ST3-92	NM_153456	exon1	c.C435G	p.R145R	AGGGCGCGACGTG	.	122	38	183	0	.	0	0	0	0	0	G	96743551	C	G	96743551	2	3	31	1	0	0	0	0	0	0	0	1	7393	755	27	2		2	HS6ST3	13	96743551	Silent	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	1622459	96743551	18426327	1657	7031										
GPR183	1880	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr13	99948095	99948095	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gcgcagttatcctacacaagGcatctccgattctccagtca	7	14	3	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GPR183-522	NM_004951	exon2	c.C305G	p.A102G	CACAAGGCATCTC	.	129	37	218	2	.	0	0	0	0	0	C	99948095	G	C	99948095	3	2	31	1	0	0	0	0	1	0	0	0	6698	1203	42	3	784	3	GPR183	13	99948095	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	3204544	99948095	15221783	1658	7032										
NALCN	259232	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr13	101736110	101736110	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tgcgatcttcagtcggctctTcaggtcttcccatcttctct	7	14	7	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	NALCN-167	NM_052867	exon31	c.A3535C	p.K1179Q	GGCTCTTCAGGTC	.	30	7	73	0	.	0	0	0	0	0	G	101736110	T	G	101736110	3	3	31	1	0	0	0	0	1	0	0	0	10176	1792	62	5	1737	5	NALCN	13	101736110	Missense_Mutation	SNP	T	TCGA-OR-A5KB-01A-11D-A30A-10	1788015	101736110	13433768	1659	7033										
NALCN	259232	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr13	101755576	101755576	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tcgaacaactttcctcatctGgggcaccagtttgaatatgc	8	11	2	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	NALCN-167	NM_052867	exon26	c.C3004A	p.Q1002K	TCATCTGGGGCAC	.	51	16	65	0	.	0	0	0	0	0	T	101755576	G	T	101755576	3	4	31	1	0	0	0	0	1	0	0	0	10176	1357	47	3	2288	3	NALCN	13	101755576	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	19466	101755576	13414302	1660	7034										
NALCN	259232	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr13	101757250	101757250	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gttggtgatgcttactaaagTtgatggtactttgtattttt	10	3	0	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	NALCN-167	NM_052867	exon23	c.A2631T	p.Q877H	CTAAAGTTGATGG	.	87	31	95	1	.	0	0	0	0	0	A	101757250	T	A	101757250	3	1	31	1	0	0	0	0	1	0	0	0	10176	1722	60	5	2673	5	NALCN	13	101757250	Missense_Mutation	SNP	T	TCGA-OR-A5KB-01A-11D-A30A-10	1674	101757250	13412628	1661	7035										
NALCN	259232	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr13	102029346	102029346	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ctcggatcataatcagtggcCgtggaatccgcaacatgccc	10	13	2	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	NALCN-167	NM_052867	exon5	c.G437T	p.R146L	AGTGGCCGTGGAA	.	91	19	103	0	.	0	0	0	0	0	A	102029346	C	A	102029346	3	1	31	1	0	0	0	0	1	0	0	0	10176	652	23	2	4939	2	NALCN	13	102029346	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	272096	102029346	13140532	1662	7036										
TPP2	7174	bcgsc.ca	37	chr13	103268776	103268776	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	aggaaaaaatctgggaccctGttcacagagtggcccttgca	11	10	2	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TPP2-92	NM_003291	exon4	c.G421T	p.V141F	GACCCTGTTCACA	.	46	4	48	0	.	0	0	0	0	0	T	103268776	G	T	103268776	3	4	31	1	0	0	0	0	1	0	0	0	16450	1377	48	3	435	3	TPP2	13	103268776	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	1239430	103268776	11901102	1663	7037										
SLC10A2	6555	ucsc.edu;bcgsc.ca	37	chr13	103701772	103701772	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	agctgcgtgttctgcatcccCgtttcaaaagcaaccgttcg	9	13	2	0	rs201412654		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SLC10A2-94	NM_000452	exon5	c.G786A	p.T262T	CATCCCCGTTTCA	.	80	17	132	2	.	0	0	0	0	0	T	103701772	C	T	103701772	2	4	31	1	0	0	0	0	0	0	0	1	14409	639	23	1		1	SLC10A2	13	103701772	Silent	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	432996	103701772	11468106	1664	7038										
COL4A1	1282	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr13	110850953	110850953	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tcaccagggaagccaggggcAccagcctgcccaggtacagg	14	14	1	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	COL4A1-654	NM_001845	exon21	c.T1146C	p.G382G	AGGGGCACCAGCC	.	38	12	67	0	.	0	0	0	0	0	G	110850953	A	G	110850953	2	3	31	1	0	0	0	0	0	0	0	1	3695	146	6	4		4	COL4A1	13	110850953	Silent	SNP	A	TCGA-OR-A5KB-01A-11D-A30A-10	7149181	110850953	4318925	1665	7039										
ING1	3621	hgsc.bcm.edu	37	chr13	111368316	111368316	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gacagtttcaggccgcatctCtgctgacccgagggtggggc	15	12	2	1	rs9555726	byfrequency	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ING1-515	NM_005537	exon1	c.C526T	p.L176L	GCATCTCTGCTGA	.	7	7	0	0	C|0.372;T|0.628	0	0	0	0	0	T	111368316	C	T	111368316	2	4	31	1	0	0	0	0	0	0	0	1	7756	912	32	3		3	ING1	13	111368316	Silent	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	517363	111368316	3801562	1666	7040										
ATP11A	23250	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr13	113508734	113508734	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cgcaggaacacgcagctgctGgagctgaccaccaagaggat	13	12	0	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ATP11A-138	NM_032189	exon19	c.G2133C	p.L711L	GCTGCTGGAGCTG	.	100	23	115	0	.	0	0	0	0	0	C	113508734	G	C	113508734	2	2	31	1	0	0	0	0	0	0	0	1	1120	1335	47	3		3	ATP11A	13	113508734	Silent	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	2140418	113508734	1661144	1667	7041										
PCID2	55795	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr13	113839829	113839829	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	attttaaacagctggttcacCagaaacagcatgccccactt	6	12	1	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PCID2-90	NM_001258212	exon8	c.G675T	p.L225L	GTTCACCAGAAAC	.	42	9	55	0	.	0	0	0	0	0	A	113839829	C	A	113839829	2	1	31	1	0	0	0	0	0	0	0	1	11608	581	21	3		3	PCID2	13	113839829	Silent	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	331095	113839829	1330049	1668	7042										
GRK1	6011	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr13	114322346	114322346	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	atgaaggcgaccggcaagctGtatgcctgcaagaagctgaa	13	9	0	3	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GRK1-614	NM_002929	exon1	c.G645T	p.L215L	CAAGCTGTATGCC	.	130	36	164	1	.	0	0	0	0	0	T	114322346	G	T	114322346	2	4	31	1	0	0	0	0	0	0	0	1	6811	1364	48	3		3	GRK1	13	114322346	Silent	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	482517	114322346	847532	1669	7043										
OR11H12	440153	broad.mit.edu;bcgsc.ca	37	chr14	19378109	19378109	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tgtggatttctgtggttcctGatccccattgttctcatctc	8	11	3	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OR11H12-24	NM_001013354	exon1	c.G516C	p.L172L	GTTCCTGATCCCC	.	584	163	605	1	.	0	0	0	0	0	C	19378109	G	C	19378109	2	2	31	1	0	0	0	0	0	0	0	1	10956	1277	45	3		3	OR11H12	14	19378109	Silent	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10		19378109	87971431	1670	7044										
OR4N2	390429	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr14	20296018	20296018	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cactatcctactgtcatgaaCcctagaacctgctatgcaat	5	13	1	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OR4N2-71	NM_001004723	exon1	c.C411A	p.N137K	CATGAACCCTAGA	.	147	68	195	1	.	0	0	0	0	0	A	20296018	C	A	20296018	3	1	31	1	0	0	0	0	1	0	0	0	11106	506	18	3	413	3	OR4N2	14	20296018	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	917909	20296018	87053522	1671	7045										
OR11G2	390439	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr14	20665906	20665906	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cgttctctggctgcttcctcCagttctactttttcttctcc	5	15	4	0	rs77997988		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OR11G2-70	NM_001005503	exon1	c.C412A	p.Q138K	TTCCTCCAGTTCT	.	67	38	107	0	.	0	0	0	0	0	A	20665906	C	A	20665906	3	1	31	1	0	0	0	0	1	0	0	0	10954	595	21	3	414	3	OR11G2	14	20665906	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	369888	20665906	86683634	1672	7046										
TEP1	7011	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr14	20845643	20845643	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cagtgcctgaccctgagcccCctgggaacctagagaatgag	12	13	0	4	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TEP1-95	NM_007110	exon41	c.G5884T	p.G1962W	GAGCCCCCTGGGA	.	54	30	81	0	.	0	0	0	0	0	A	20845643	C	A	20845643	3	1	31	1	0	0	0	0	1	0	0	0	15796	623	22	3	2059	3	TEP1	14	20845643	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	179737	20845643	86503897	1673	7047										
MYH6	4624	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr14	23876252	23876252	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cttcccattctcggtttcagCaatgaccttgcctccctccc	5	18	2	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MYH6-94	NM_002471	exon3	c.G181C	p.A61P	TTTCAGCAATGAC	.	87	59	92	0	.	0	0	0	0	0	G	23876252	C	G	23876252	3	3	31	1	0	0	0	0	1	0	0	0	10066	710	25	3	5786	3	MYH6	14	23876252	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	3030609	23876252	83473288	1674	7048										
RNF31	55072	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr14	24617561	24617561	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ggaggagccagatgagcaccAggttgctacagtcacactgg	14	10	1	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	RNF31-90	NM_017999	exon3	c.A434C	p.Q145P	AGCACCAGGTTGC	.	115	57	195	0	.	0	0	0	0	0	C	24617561	A	C	24617561	3	2	31	1	0	0	0	0	1	0	0	0	13522	188	7	5	444	5	RNF31	14	24617561	Missense_Mutation	SNP	A	TCGA-OR-A5KB-01A-11D-A30A-10	741309	24617561	82731979	1675	7049										
EAPP	55837	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr14	35005309	35005309	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	caaaagtttaccagttcccaGagaggataacttgtcctcca	7	11	0	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	EAPP-91	NM_018453	exon2	c.C247T	p.L83L	TTCCCAGAGAGGA	.	25	17	36	0	.	0	0	0	0	0	A	35005309	G	A	35005309	2	1	31	1	0	0	0	0	0	0	0	1	4888	933	33	3		3	EAPP	14	35005309	Silent	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	10387748	35005309	72344231	1676	7050										
FAM177A1	283635	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr14	35548204	35548204	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	caaagtaccaatatgccattGatgaatattatcggatgaag	8	6	0	3	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FAM177A1-226	NM_173607	exon4	c.G478C	p.D160H	GCCATTGATGAAT	.	60	16	96	0	.	0	0	0	0	0	C	35548204	G	C	35548204	3	2	31	1	0	0	0	0	1	0	0	0	5517	1290	45	3	492	3	FAM177A1	14	35548204	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	542895	35548204	71801336	1677	7051										
LRFN5	145581	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr14	42356483	42356483	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ctgaccctctctttcagcgaGctcaggtactagcaacctca	7	15	4	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	LRFN5-97	NM_152447	exon3	c.G655C	p.A219P	CAGCGAGCTCAGG	.	102	57	121	0	.	0	0	0	0	0	C	42356483	G	C	42356483	3	2	31	1	0	0	0	0	1	0	0	0	8968	971	34	3	657	3	LRFN5	14	42356483	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	6808279	42356483	64993057	1678	7052										
LRFN5	145581	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr14	42356830	42356830	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	atttcaaatgcaacaagatcTctggtgtatgataacggaac	8	7	2	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	LRFN5-97	NM_152447	exon3	c.T1002A	p.S334S	AAGATCTCTGGTG	.	78	37	130	0	.	0	0	0	0	0	A	42356830	T	A	42356830	2	1	31	1	0	0	0	0	0	0	0	1	8968	1538	54	5		5	LRFN5	14	42356830	Silent	SNP	T	TCGA-OR-A5KB-01A-11D-A30A-10	347	42356830	64992710	1679	7053										
FSCB	84075	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr14	44974595	44974595	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ggagtttcatctgcaggagcCtctatagctgctagaagctg	12	9	3	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FSCB-587	NM_032135	exon1	c.G1596T	p.E532D	AGGAGCCTCTATA	.	35	22	31	0	.	0	0	0	0	0	A	44974595	C	A	44974595	3	1	31	1	0	0	0	0	1	0	0	0	6085	680	24	3	885	3	FSCB	14	44974595	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	2617765	44974595	62374945	1680	7054										
MDGA2	161357	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr14	47342647	47342647	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ctatctcacctatatgttgtCcatacatgtgataaaagaag	6	8	1	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MDGA2-95	NM_001113498	exon14	c.G2741C	p.G914A	TGTTGTCCATACA	.	33	16	71	0	.	0	0	0	0	0	G	47342647	C	G	47342647	3	3	31	1	0	0	0	0	1	0	0	0	9435	855	30	3	352	3	MDGA2	14	47342647	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	2368052	47342647	60006893	1681	7055										
ABHD12B	145447	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr14	51355545	51355545	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ctttctttcatttcaaggatGcccagttgatgctattgtct	7	9	4	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ABHD12B-153	NM_001206673	exon9	c.G704A	p.C235Y	AAGGATGCCCAGT	.	31	18	55	0	.	0	0	0	0	0	A	51355545	G	A	51355545	3	1	31	1	0	0	0	0	1	0	0	0	77	1319	46	3	517	3	ABHD12B	14	51355545	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	4012898	51355545	55993995	1682	7056										
NID2	22795	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr14	52485862	52485862	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gaccatcagggtccacgcacCagcagaaaccagtgctgcca	10	15	1	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	NID2-158	NM_007361	exon14	c.G2945T	p.W982L	ACGCACCAGCAGA	.	177	111	180	1	.	0	0	0	0	0	A	52485862	C	A	52485862	3	1	31	1	0	0	0	0	1	0	0	0	10444	595	21	3	1218	3	NID2	14	52485862	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	1130317	52485862	54863678	1683	7057										
NID2	22795	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr14	52486816	52486816	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	atccccataatatccgggttGacaacggcaggagaaggaac	11	10	0	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	NID2-158	NM_007361	exon13	c.C2755A	p.Q919K	CGGGTTGACAACG	.	124	68	173	0	.	0	0	0	0	0	T	52486816	G	T	52486816	3	4	31	1	0	0	0	0	1	0	0	0	10444	1299	45	3	1412	3	NID2	14	52486816	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	954	52486816	54862724	1684	7058										
ARID4A	5926	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr14	58831980	58831980	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	taatgttgcctctggtacctGtagtataattgtacaagaga	9	6	1	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ARID4A-231	NM_002892	exon20	c.G3173C	p.C1058S	GTACCTGTAGTAT	.	81	52	119	0	.	0	0	0	0	0	C	58831980	G	C	58831980	3	2	31	1	0	0	0	0	1	0	0	0	919	1377	48	3	3247	3	ARID4A	14	58831980	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	6345164	58831980	48517560	1685	7059										
C14orf39	317761	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	chr14	60933637	60933637	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	aacaaacagatattatacctGcaactcttggttctgaagaa	6	8	2	3	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	C14orf39-94	NM_174978	exon10	c.C893A	p.A298E	ATACCTGCAACTC	.	17	10	17	0	.	0	0	0	0	0	T	60933637	G	T	60933637	3	4	31	1	0	0	0	0	1	0	0	0	1776	1319	46	3	906	3	C14orf39	14	60933637	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	2101657	60933637	46415903	1686	7060										
SYNE2	23224	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr14	64691758	64691758	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gaaggcgaggaggagacagaGagcaggtaacggggctttac	18	6	0	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SYNE2-164	NM_182914	exon115	c.G20511T	p.E6837D	GACAGAGAGCAGG	.	463	138	162	2	.	0	0	0	0	0	T	64691758	G	T	64691758	3	4	31	1	0	0	0	0	1	0	0	0	15483	933	33	3	21010	3	SYNE2	14	64691758	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	3758121	64691758	42657782	1687	7061										
AKAP5	9495	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr14	64935226	64935226	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gcatccatgctttgcttcaaGagaagaaagaaagcagccaa	9	9	1	3	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	AKAP5-226	NM_004857	exon2	c.G114C	p.K38N	CTTCAAGAGAAGA	.	276	41	188	0	.	0	0	0	0	0	C	64935226	G	C	64935226	3	2	31	1	0	0	0	0	1	0	0	0	454	933	33	3	116	3	AKAP5	14	64935226	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	243468	64935226	42414314	1688	7062										
PLEKHG3	26030	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr14	65209938	65209938	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ctctgctccaagtatgcctcCcgcgatgaggcacgccgagc	11	16	1	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PLEKHG3-91	NM_015549	exon15	c.C3009G	p.S1003S	TGCCTCCCGCGAT	.	111	24	13	0	.	0	0	0	0	0	G	65209938	C	G	65209938	2	3	31	1	0	0	0	0	0	0	0	1	12099	610	22	3		3	PLEKHG3	14	65209938	Silent	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	274712	65209938	42139602	1689	7063										
VTI1B	10490	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	68120200	68120200	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ccgacttttgctcaagttttCacttgtgtttaccagctgag	8	10	2	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	VTI1B-90	NM_006370	exon5	c.G556T	p.E186X	AGTTTTCACTTGT	.	50	8	65	0	.	0	0	0	0	0	A	68120200	C	A	68120200	4	1	31	1	0	0	0	0	0	1	0	0	17274	835	29	3	150	3	VTI1B	14	68120200	Nonsense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	2910262	68120200	39229340	1690	7064										
SLC8A3	6547	ucsc.edu;bcgsc.ca	37	chr14	70515629	70515629	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gagacggcgaagcaggcccaGccgtggcagtactctgtggg	17	11	1	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SLC8A3-225	NM_183002	exon7	c.C2262G	p.G754G	GGCCCAGCCGTGG	.	131	85	128	2	.	0	0	0	0	0	C	70515629	G	C	70515629	2	2	31	1	0	0	0	0	0	0	0	1	14743	958	34	3		3	SLC8A3	14	70515629	Silent	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	2395429	70515629	36833911	1691	7065										
SLC8A3	6547	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr14	70634023	70634023	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cttcttggcttgttctgctgCatgtttcttcaggatattgc	9	9	4	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SLC8A3-225	NM_183002	exon2	c.G1117T	p.A373S	CTGCTGCATGTTT	.	131	87	169	0	.	0	0	0	0	0	A	70634023	C	A	70634023	3	1	31	1	0	0	0	0	1	0	0	0	14743	710	25	3	1805	3	SLC8A3	14	70634023	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	118394	70634023	36715517	1692	7066										
ADAM21	8747	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr14	70926120	70926120	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tgtcttgtcacatgtctgccTtcctgagacctgcaatatga	8	11	3	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ADAM21-92	NM_003813	exon2	c.T1904A	p.L635H	TCTGCCTTCCTGA	.	397	180	435	1	.	0	0	0	0	0	A	70926120	T	A	70926120	3	1	31	1	0	0	0	0	1	0	0	0	243	1609	56	5	1906	5	ADAM21	14	70926120	Missense_Mutation	SNP	T	TCGA-OR-A5KB-01A-11D-A30A-10	292097	70926120	36423420	1693	7067										
ADAM20	8748	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr14	70990144	70990144	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ttccaaaagcacaagcagccCcaggatgtagagtacagttt	9	10	0	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ADAM20-226	NM_003814	exon2	c.G1481T	p.G494V	GCAGCCCCAGGAT	.	120	43	97	0	.	0	0	0	0	0	A	70990144	C	A	70990144	3	1	31	1	0	0	0	0	1	0	0	0	242	623	22	3	853	3	ADAM20	14	70990144	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	64024	70990144	36359396	1694	7068										
SIPA1L1	26037	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr14	72128143	72128143	+	Silent	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ttccagcacgttttcgtcatCgtcagggtgcacaatccgtg	10	12	2	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SIPA1L1-156	NM_015556	exon7	c.C2214A	p.I738I	CGTCATCGTCAGG	.	52	35	76	1	.	0	0	0	0	0	A	72128143	C	A	72128143	2	1	31	1	0	0	0	0	0	0	0	1	14364	874	31	2		2	SIPA1L1	14	72128143	Silent	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	1137999	72128143	35221397	1695	7069										
PAPLN	89932	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr14	73711367	73711367	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tgcaggctcccaaggtgaggCggcagagtgacacctgggga	17	10	0	3	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PAPLN-70	NM_173462	exon3	c.C70A	p.R24R	GTGAGGCGGCAGA	.	140	85	122	0	.	0	0	0	0	0	A	73711367	C	A	73711367	2	1	31	1	0	0	0	0	0	0	0	1	11457	759	27	2		2	PAPLN	14	73711367	Silent	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	1583224	73711367	33638173	1696	7070										
NUMB	8650	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr14	73750814	73750814	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tttttaatggggaaatcagtCttcctctgcatagtggaagg	11	6	3	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	NUMB-1062	NM_001005744	exon10	c.G924A	p.K308K	ATCAGTCTTCCTC	.	187	41	195	0	.	0	0	0	0	0	T	73750814	C	T	73750814	2	4	31	1	0	0	0	0	0	0	0	1	10780	912	32	3		3	NUMB	14	73750814	Silent	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	39447	73750814	33598726	1697	7071										
LTBP2	4053	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	75018960	75018960	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tccagcaaggccctggggcgGgaccccctccctggaggctc	14	17	0	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	LTBP2-92	NM_000428	exon6	c.C1329T	p.S443S	GGGGCGGGACCCC	.	168	122	134	2	.	0	0	0	0	0	A	75018960	G	A	75018960	2	1	31	1	0	0	0	0	0	0	0	1	9101	1219	43	3		3	LTBP2	14	75018960	Silent	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	1268146	75018960	32330580	1698	7072										
TTLL5	23093	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr14	76149969	76149969	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cttcttactgcgcaccctctCtgaagcacaaaaagttaatc	5	13	2	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TTLL5-92	NM_015072	exon5	c.C341T	p.S114F	CCCTCTCTGAAGC	.	122	28	121	0	.	0	0	0	0	0	T	76149969	C	T	76149969	3	4	31	1	0	0	0	0	1	0	0	0	16768	913	32	3	355	3	TTLL5	14	76149969	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	1131009	76149969	31199571	1699	7073										
NRXN3	9369	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	79175583	79175583	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gtttataagaataatgacatCcgtctggagctgtctcgcct	9	9	2	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	NRXN3-587	NM_004796	exon4	c.C126T	p.I42I	TGACATCCGTCTG	.	62	36	89	1	.	0	0	0	0	0	T	79175583	C	T	79175583	2	4	31	1	0	0	0	0	0	0	0	1	10696	845	30	3		3	NRXN3	14	79175583	Silent	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	3025614	79175583	28173957	1700	7074										
PTPN21	11099	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr14	88971713	88971713	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ctgatcaaagtcaccaaaatCcgctatatagaatgacaaac	5	10	2	3	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PTPN21-230	NM_007039	exon5	c.G451T	p.D151Y	CAAAATCCGCTAT	.	123	8	153	0	.	0	0	0	0	0	A	88971713	C	A	88971713	3	1	31	1	0	0	0	0	1	0	0	0	12821	855	30	3	3133	3	PTPN21	14	88971713	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	9796130	88971713	18377827	1701	7075										
SERPINA4	5267	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr14	95030148	95030148	+	Missense_Mutation	SNP	C	C	A													0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gggcctgggcttcaacctcaCcgagctgtctgagtccgatg					novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SERPINA4-230	NM_006215	exon2	c.C329A	p.T110N	ACCTCACCGAGCT	.	77	35	72	1	.	0	0	0	0	0	A	95030148	C	A	95030148	3	1	31	1	0	0	0	0	1	0	0	0	14126	507	18	3	331	3	SERPINA4	14	95030148	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	6058435	95030148	12319392	1702	7076	71	2								
SERPINA4	5267	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr14	95030149	95030149	+	Silent	SNP	C	C	G													0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ggcctgggcttcaacctcacCgagctgtctgagtccgatgt					rs141308668	alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SERPINA4-230	NM_006215	exon2	c.C330G	p.T110T	CCTCACCGAGCTG	.	78	36	72	0	C|1.000;T|0.000	0	0	0	0	0	G	95030149	C	G	95030149	2	3	31	1	0	0	0	0	0	0	0	1	14126	639	23	2		2	SERPINA4	14	95030149	Silent	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	1	95030149	12319391	1703	7077	71	2								
SERPINA5	5104	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	95054239	95054239	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gattatgtggcaaagcaaacGaagggcaagattgtggactt	13	5	0	1	rs146244413	byfrequency	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SERPINA5-652	NM_000624	exon3	c.G540A	p.T180T	GCAAACGAAGGGC	.	353	233	403	1	G|0.999;A|0.001	0	0	0	0	0	A	95054239	G	A	95054239	2	1	31	1	0	0	0	0	0	0	0	1	14127	1045	37	1		1	SERPINA5	14	95054239	Silent	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	24090	95054239	12295301	1704	7078										
ATG2B	55102	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr14	96813577	96813577	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	acttccagtgcacaattatcCtgcagtaaagagccccatgg	8	12	0	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ATG2B-93	NM_018036	exon2	c.G264T	p.Q88H	ATTATCCTGCAGT	.	71	46	97	0	.	0	0	0	0	0	A	96813577	C	A	96813577	3	1	31	1	0	0	0	0	1	0	0	0	1095	680	24	3	6136	3	ATG2B	14	96813577	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	1759338	96813577	10535963	1705	7079										
PAPOLA	10914	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr14	97029218	97029218	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	attcagacagcggcttctctGttggcctctcaggtactaag	10	11	3	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PAPOLA-68	NM_032632	exon21	c.G2130C	p.L710L	TTCTCTGTTGGCC	.	25	13	38	0	.	0	0	0	0	0	C	97029218	G	C	97029218	2	2	31	1	0	0	0	0	0	0	0	1	11458	1364	48	3		3	PAPOLA	14	97029218	Silent	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	215641	97029218	10320322	1706	7080										
HHIPL1	84439	hgsc.bcm.edu	37	chr14	100141689	100141689	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cgggcgcgtggaggtgttcgTgggcggacgctggggcaccg	22	10	0	0	rs7158073	byfrequency	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	HHIPL1-70	NM_001127258	exon9	c.T2075C	p.V692A	TGTTCGTGGGCGG	.	29	4	1	0	T|0.478;C|0.522	0	0	0	0	0	C	100141689	T	C	100141689	3	2	31	1	0	0	0	0	1	0	0	0	7114	1696	59	4	2210	4	HHIPL1	14	100141689	Missense_Mutation	SNP	T	TCGA-OR-A5KB-01A-11D-A30A-10	3112471	100141689	7207851	1707	7081										
RTL1	388015	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr14	101351118	101351118	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	caaatgagtcttcagagggtTctatcatttcgtcggatgga	11	7	4	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	RTL1-46	NM_001134888	exon1	c.A8G	p.E3G	GAGGGTTCTATCA	.	100	66	99	0	.	0	0	0	0	0	C	101351118	T	C	101351118	3	2	31	1	0	0	0	0	1	0	0	0	13759	1783	62	4	4072	4	RTL1	14	101351118	Missense_Mutation	SNP	T	TCGA-OR-A5KB-01A-11D-A30A-10	1209429	101351118	5998422	1708	7082										
DIO3	1735	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr14	102028262	102028262	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	aactccgaggtggttctgccCgacggcttccagagccagca	12	14	1	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DIO3-494	.	.	.	.	TCTGCCCGACGGC	.	114	39	76	0	.	0	0	0	0	0	G	102028262	C	G	102028262	2	3	31	1	0	0	0	0	0	0	0	1	4537	639	23	2		2	DIO3	14	102028262	Silent	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	677144	102028262	5321278	1709	7083										
MARK3	4140	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	103931918	103931918	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	aaaatctattgttagatgccGatatgaacattaaaatagca	6	5	1	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MARK3-360	NM_001128919	exon8	c.G565A	p.D189N	GATGCCGATATGA	.	55	13	56	0	.	0	0	0	0	0	A	103931918	G	A	103931918	3	1	31	1	0	0	0	0	1	0	0	0	9342	1058	37	1	595	1	MARK3	14	103931918	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	1903656	103931918	3417622	1710	7084										
CKB	1152	hgsc.bcm.edu	37	chr14	103988180	103988180	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	accgcgagcttctcgatggcGcggcgctccccgcggctgca	14	17	1	0	rs1136165	byfrequency	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CKB-115	NM_001823	exon4	c.C456A	p.R152R	GATGGCGCGGCGC	.	6	6	0	0	G|0.327;T|0.673	0	0	0	0	0	T	103988180	G	T	103988180	2	4	31	1	0	0	0	0	0	0	0	1	3452	1074	38	2		2	CKB	14	103988180	Silent	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	56262	103988180	3361360	1711	7085										
TDRD9	122402	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	104470600	104470600	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gctggacgagtgtctagaggGtactgttaccggctggtaca	15	8	1	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TDRD9-70	NM_153046	exon14	c.G1509T	p.G503G	TAGAGGGTACTGT	.	135	107	111	2	.	0	0	0	0	0	T	104470600	G	T	104470600	2	4	31	1	0	0	0	0	0	0	0	1	15773	1248	44	3		3	TDRD9	14	104470600	Silent	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	482420	104470600	2878940	1712	7086										
ASPG	374569	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	104561948	104561948	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gctgcctcgatgctgtccttCatgctggagaacctgcagaa	11	12	1	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_001080464	exon4	c.C384T	p.F128F	GTCCTTCATGCTG	.	145	28	140	1	.	0	0	0	0	0	T	104561948	C	T	104561948	2	4	31	1	0	0	0	0	0	0	0	1	1053	825	29	3		3	ASPG	14	104561948	Silent	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	91348	104561948	2787592	1713	7087										
KIF26A	26153	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr14	104641745	104641745	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ctcaggccagccccgcccgaGggggccggaagccctcgcca	14	19	1	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	KIF26A-24	NM_015656	exon12	c.G2620A	p.G874R	GCCCGAGGGGGCC	.	120	26	22	0	.	0	0	0	0	0	A	104641745	G	A	104641745	3	1	31	1	0	0	0	0	1	0	0	0	8315	1000	35	3	2666	3	KIF26A	14	104641745	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	79797	104641745	2707795	1714	7088										
KIF26A	26153	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	104641876	104641876	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	acccctgagccctgcaaggcCattgtctggggtgaccagag	13	13	1	3	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	KIF26A-24	NM_015656	exon12	c.C2751T	p.A917A	CAAGGCCATTGTC	.	62	11	32	0	.	0	0	0	0	0	T	104641876	C	T	104641876	2	4	31	1	0	0	0	0	0	0	0	1	8315	581	21	3		3	KIF26A	14	104641876	Silent	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	131	104641876	2707664	1715	7089										
AHNAK2	113146	broad.mit.edu;bcgsc.ca	37	chr14	105418991	105418991	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cttaacatctatctgggggcCcttgaggtccactttgggca	11	11	2	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	AHNAK2-47	NM_138420	exon7	c.G2797T	p.G933C	GGGGGCCCTTGAG	.	226	146	204	2	.	0	0	0	0	0	A	105418991	C	A	105418991	3	1	31	1	0	0	0	0	1	0	0	0	415	623	22	3	14594	3	AHNAK2	14	105418991	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	777115	105418991	1930549	1716	7090										
OR4M2	390538	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr15	22368578	22368578	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	aaagagtaaattgaagaaatGgaaactgcaaattacaccaa	7	5	0	3	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OR4M2-69	NM_001004719	exon1	c.G3T	p.M1I	AGAAATGGAAACT	.	81	11	99	0	.	0	0	0	0	0	T	22368578	G	T	22368578	3	4	31	1	0	0	0	0	1	0	0	0	11105	1348	47	3	5	3	OR4M2	15	22368578	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10		22368578	80162814	1717	7091										
OR4M2	390538	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr15	22368613	22368613	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	caccaaggtgacagaatttgTtctcactggcctatcccaga	8	12	1	3	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OR4M2-69	NM_001004719	exon1	c.T38C	p.V13A	AATTTGTTCTCAC	.	133	34	176	0	.	0	0	0	0	0	C	22368613	T	C	22368613	3	2	31	1	0	0	0	0	1	0	0	0	11105	1725	60	4	40	4	OR4M2	15	22368613	Missense_Mutation	SNP	T	TCGA-OR-A5KB-01A-11D-A30A-10	35	22368613	80162779	1718	7092										
OR4M2	390538	ucsc.edu;bcgsc.ca	37	chr15	22369084	22369084	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tgttcgacttcctttctgtgGgcccaatgagttagacagtt	10	9	1	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OR4M2-69	NM_001004719	exon1	c.G509T	p.G170V	TCTGTGGGCCCAA	.	576	118	610	3	.	0	0	0	0	0	T	22369084	G	T	22369084	3	4	31	1	0	0	0	0	1	0	0	0	11105	1232	43	3	511	3	OR4M2	15	22369084	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	471	22369084	80162308	1719	7093										
OR4N4	283694	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr15	22382866	22382866	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ccatctgccggcctctgcacTgttcaactgtcatgaaccct	7	16	4	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OR4N4-73	NM_001005241	exon1	c.T394G	p.C132G	CTGCACTGTTCAA	.	271	78	290	0	.	0	0	0	0	0	G	22382866	T	G	22382866	3	3	31	1	0	0	0	0	1	0	0	0	11107	1580	55	5	396	5	OR4N4	15	22382866	Missense_Mutation	SNP	T	TCGA-OR-A5KB-01A-11D-A30A-10	13782	22382866	80148526	1720	7094										
TUBGCP5	114791	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr15	22855078	22855078	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ttctggtatgcaacttacacGttatatagcgtatcagaaaa	7	7	2	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TUBGCP5-91	NM_052903	exon13	c.G1539T	p.T513T	TTACACGTTATAT	.	273	32	177	0	.	0	0	0	0	0	T	22855078	G	T	22855078	2	4	31	1	0	0	0	0	0	0	0	1	16807	1132	40	2		2	TUBGCP5	15	22855078	Silent	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	472212	22855078	79676314	1721	7095										
MAGEL2	54551	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr15	23889842	23889842	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ctctcatccaagggagacaaGggctgtgcctccaccttgga	11	13	1	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_019066	exon1	c.C3048A	p.P1016P	AGACAAGGGCTGT	.	175	30	171	1	.	0	0	0	0	0	T	23889842	G	T	23889842	2	4	31	1	0	0	0	0	0	0	0	1	9217	987	35	3		3	MAGEL2	15	23889842	Silent	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	1034764	23889842	78641550	1722	7096										
GABRB3	2562	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	26866612	26866612	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	attgtcaagcgtgaggttgaGagggatcccagaataggcga	15	6	1	3	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GABRB3-518	NM_021912	exon4	c.C310G	p.L104V	GGTTGAGAGGGAT	.	74	10	85	0	.	0	0	0	0	0	C	26866612	G	C	26866612	3	2	31	1	0	0	0	0	1	0	0	0	6187	942	33	3	1135	3	GABRB3	15	26866612	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	2976770	26866612	75664780	1723	7097										
GABRA5	2558	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr15	27182468	27182468	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ggcactgagaacatcagcacCagcacaggtgagggctcggc	14	12	1	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GABRA5-91	NM_001165037	exon8	c.C717A	p.T239T	CAGCACCAGCACA	.	154	86	118	0	.	0	0	0	0	0	A	27182468	C	A	27182468	2	1	31	1	0	0	0	0	0	0	0	1	6183	581	21	3		3	GABRA5	15	27182468	Silent	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	315856	27182468	75348924	1724	7098										
GABRG3	2567	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr15	27572125	27572125	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ggctcactggatcaccacacCcaatcagctcctccggattt	7	16	3	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_001270873	exon4	c.C440A	p.P147H	CCACACCCAATCA	.	106	46	116	0	.	0	0	0	0	0	A	27572125	C	A	27572125	3	1	31	1	0	0	0	0	1	0	0	0	6192	623	22	3	454	3	GABRG3	15	27572125	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	389657	27572125	74959267	1725	7099										
APBA2	321	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr15	29346205	29346205	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	acatggagctgcccttggagGgctatgtgcccgagggcctg	16	11	0	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	APBA2-90	NM_005503	exon3	c.G118T	p.G40C	TTGGAGGGCTATG	.	289	74	234	0	.	0	0	0	0	0	T	29346205	G	T	29346205	3	4	31	1	0	0	0	0	1	0	0	0	757	1232	43	3	120	3	APBA2	15	29346205	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	1774080	29346205	73185187	1726	7100										
APBA2	321	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	29400511	29400511	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	caggtgaagctcaacattgtCagctgtcccccggtcaccac	9	15	3	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	APBA2-90	NM_005503	exon12	c.C1956T	p.V652V	CATTGTCAGCTGT	.	123	16	120	1	.	0	0	0	0	0	T	29400511	C	T	29400511	2	4	31	1	0	0	0	0	0	0	0	1	757	813	29	3		3	APBA2	15	29400511	Silent	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	54306	29400511	73130881	1727	7101										
TRPM1	4308	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr15	31295069	31295069	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ctgctttgccggagaagataCgttgcctcacattcagaaga	10	10	2	4	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TRPM1-94	NM_001252020	exon27	c.G3885T	p.T1295T	AAGATACGTTGCC	.	68	36	78	0	.	0	0	0	0	0	A	31295069	C	A	31295069	2	1	31	1	0	0	0	0	0	0	0	1	16623	523	19	2		2	TRPM1	15	31295069	Silent	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	1894558	31295069	71236323	1728	7102										
OTUD7A	161725	ucsc.edu;bcgsc.ca	37	chr15	31776739	31776739	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	aagctgcccagcttgttggcCacggagtcggcgcgcgtctt	14	13	1	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OTUD7A-502	NM_130901	exon11	c.G1539C	p.V513V	GTTGGCCACGGAG	.	66	24	62	2	.	0	0	0	0	0	G	31776739	C	G	31776739	2	3	31	1	0	0	0	0	0	0	0	1	11347	581	21	3		3	OTUD7A	15	31776739	Silent	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	481670	31776739	70754653	1729	7103										
FMN1	342184	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr15	33300216	33300216	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tagcatcaaagaggcataccTgcaggttttcaatttcttct	7	9	4	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FMN1-23	NM_001103184	exon3	c.A1553T	p.Q518L	CATACCTGCAGGT	.	65	26	43	0	.	0	0	0	0	0	A	33300216	T	A	33300216	3	1	31	1	0	0	0	0	1	0	0	0	5968	1594	55	5	2097	5	FMN1	15	33300216	Missense_Mutation	SNP	T	TCGA-OR-A5KB-01A-11D-A30A-10	1523477	33300216	69231176	1730	7104										
RYR3	6263	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	33944994	33944994	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cagagatcaaatcggagcaaCgtggacctggagatcggctg	14	9	1	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	RYR3-520	NM_001243996	exon32	c.C4218A	p.N1406K	GAGCAACGTGGAC	.	316	66	330	2	.	0	0	0	0	0	A	33944994	C	A	33944994	3	1	31	1	0	0	0	0	1	0	0	0	13805	535	19	2	4344	2	RYR3	15	33944994	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	644778	33944994	68586398	1731	7105										
RYR3	6263	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr15	34111987	34111987	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gacgaccctttgtacacctcCtattccagcatgatggccaa	7	14	0	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	RYR3-520	NM_001036	exon77	c.C10737A	p.S3579S	CACCTCCTATTCC	.	103	26	90	0	.	0	0	0	0	0	A	34111987	C	A	34111987	2	1	31	1	0	0	0	0	0	0	0	1	13805	668	24	3		3	RYR3	15	34111987	Silent	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	166993	34111987	68419405	1732	7106										
CHRM5	1133	ucsc.edu;bcgsc.ca	37	chr15	34355202	34355202	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cacctacatcctcatgggacGctgggctctcgggagtctgg	13	13	3	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CHRM5-91	NM_012125	exon3	c.G284T	p.R95L	TGGGACGCTGGGC	.	190	78	181	2	.	0	0	0	0	0	T	34355202	G	T	34355202	3	4	31	1	0	0	0	0	1	0	0	0	3386	1087	38	2	286	2	CHRM5	15	34355202	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	243215	34355202	68176190	1733	7107										
GPR176	11245	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr15	40094026	40094026	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	agcacagtctggtagacgacCagggtggcatagggcacgct	15	10	1	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GPR176-519	NM_007223	exon3	c.G855T	p.L285L	GACGACCAGGGTG	.	149	40	159	0	.	0	0	0	0	0	A	40094026	C	A	40094026	2	1	31	1	0	0	0	0	0	0	0	1	6693	581	21	3		3	GPR176	15	40094026	Silent	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	5738824	40094026	62437366	1734	7108										
DISP2	85455	hgsc.bcm.edu	37	chr15	40660192	40660192	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tcttcatgggcacggctgtgCtggtgcacctggcgctcacg	14	13	3	0	rs8040755	byfrequency	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DISP2-92	NM_033510	exon8	c.C1879T	p.L627L	GCTGTGCTGGTGC	.	19	16	1	0	C|0.941;T|0.059	0	0	0	0	0	T	40660192	C	T	40660192	2	4	31	1	0	0	0	0	0	0	0	1	4551	796	28	3		3	DISP2	15	40660192	Silent	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	566166	40660192	61871200	1735	7109										
INO80	54617	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr15	41272438	41272438	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tggttaccgtcctccagaggGgttggtgcctttgccctgtt	13	11	0	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	INO80-72	NM_017553	exon36	c.C4654T	p.P1552S	CAGAGGGGTTGGT	.	70	16	67	0	.	0	0	0	0	0	A	41272438	G	A	41272438	3	1	31	1	0	0	0	0	1	0	0	0	7767	1232	43	3	20	3	INO80	15	41272438	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	612246	41272438	61258954	1736	7110										
MAPKBP1	23005	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	42116197	42116197	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	aaacttgcagcccccaccccCtgagaagactcccaacccca	5	20	0	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MAPKBP1-589	NM_001128608	exon30	c.C4169T	p.P1390L	CACCCCCTGAGAA	.	41	8	41	0	.	0	0	0	0	0	T	42116197	C	T	42116197	3	4	31	1	0	0	0	0	1	0	0	0	9320	681	24	3	4283	3	MAPKBP1	15	42116197	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	843759	42116197	60415195	1737	7111										
SPTBN5	51332	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	42158294	42158294	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gcaggaactccaggaagttcCgcctgtcctccagctcctgg	11	15	0	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SPTBN5-91	NM_016642	exon38	c.G6659T	p.R2220L	AAGTTCCGCCTGT	.	68	11	56	0	.	0	0	0	0	0	A	42158294	C	A	42158294	3	1	31	1	0	0	0	0	1	0	0	0	15159	652	23	2	4384	2	SPTBN5	15	42158294	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	42097	42158294	60373098	1738	7112										
EHD4	30844	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	42246065	42246066	+	Missense_Mutation	DNP	TC	TC	AT													0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gccctcagtctctccatacaTcacggcgatgaaggagtctg					novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	TC	TC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	EHD4-92	NM_139265	exon2	c.G309A	p.M104L	ATACATCACGGCG	.	60	0	90	0	.	0	0	0	0	0	AT	42246066	TC	AT	42246065	3	1	31	1	0	0	0	0	1	0	0	0	4991	1435	50	5	1335	5	EHD4	15	42246065	Missense_Mutation	DNP	TC	TCGA-OR-A5KB-01A-11D-A30A-10	87771	42246065	60285327	1739	7113										
PLA2G4D	283748	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr15	42364533	42364533	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gaggctcaagtagaggggcaGagggttctgaccccgttcca	15	10	2	3	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PLA2G4D-136	NM_178034	exon14	c.C1375T	p.L459L	GGGGCAGAGGGTT	.	82	19	69	0	.	0	0	0	0	0	A	42364533	G	A	42364533	2	1	31	1	0	0	0	0	0	0	0	1	12033	933	33	3		3	PLA2G4D	15	42364533	Silent	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	118468	42364533	60166859	1740	7114										
TMEM87A	25963	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	42503948	42503948	+	Splice_Site	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	aagtgtgtgatcattcgttcCtagggaaaaaaaaaaaggtt	10	4	1	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TMEM87A-91	NM_015497	exon21	c.1627-1G>C	.	TCGTTCCTAGGGA	.	45	10	50	0	.	0	0	0	0	0	G	42503948	C	G	42503948	5	3	31	1	0	0	0	0	0	0	1	0	16247	695	24	3	45	3	TMEM87A	15	42503948	Splice_Site	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	139415	42503948	60027444	1741	7115										
TTBK2	146057	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr15	43120176	43120176	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ttgtcgagccaagccaaaatCaagcatgtaacatttcctac	6	11	1	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TTBK2-338	NM_173500	exon6	c.G487T	p.D163Y	CAAAATCAAGCAT	.	235	96	230	1	.	0	0	0	0	0	A	43120176	C	A	43120176	3	1	31	1	0	0	0	0	1	0	0	0	16715	826	29	3	3287	3	TTBK2	15	43120176	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	616228	43120176	59411216	1742	7116										
DUOX2	50506	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	45405235	45405235	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tgttaaaccagccgtcatagCgctgcacttcccagggcagt	10	13	1	0	rs200434528		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DUOX2-95	NM_014080	exon3	c.G110T	p.R37L	TCATAGCGCTGCA	.	168	62	138	2	C|0.999;A|0.001	0	0	0	0	0	A	45405235	C	A	45405235	3	1	31	1	0	0	0	0	1	0	0	0	4812	768	27	2	4664	2	DUOX2	15	45405235	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	2285059	45405235	57126157	1743	7117										
DUOXA1	90527	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr15	45409733	45409733	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tcagattagaggtgtgtggcGggaggtaacacaaggggtag	18	4	1	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DUOXA1-227	NM_144565	exon11	c.C1432T	p.R478C	TGTGGCGGGAGGT	.	110	52	140	0	.	0	0	0	0	0	A	45409733	G	A	45409733	3	1	31	1	0	0	0	0	1	0	0	0	4813	1116	39	1	23	1	DUOXA1	15	45409733	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	4498	45409733	57121659	1744	7118										
SLC24A5	283652	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr15	48431348	48431348	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tatccgcatttacatatatcCtggtttggatggtcacaata	7	8	1	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SLC24A5-90	NM_205850	exon7	c.C1054A	p.L352M	TATATCCTGGTTT	.	46	20	70	0	.	0	0	0	0	0	A	48431348	C	A	48431348	3	1	31	1	0	0	0	0	1	0	0	0	14504	680	24	3	1080	3	SLC24A5	15	48431348	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	3021615	48431348	54100044	1745	7119										
FBN1	2200	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	48802361	48802361	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gccattctgtaaacactcatCaatgtctaaaatcaaagttt	4	9	5	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FBN1-92	NM_000138	exon14	c.G1594T	p.D532Y	ACTCATCAATGTC	.	88	16	143	0	.	0	0	0	0	0	A	48802361	C	A	48802361	3	1	31	1	0	0	0	0	1	0	0	0	5721	826	29	3	7233	3	FBN1	15	48802361	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	371013	48802361	53729031	1746	7120										
SHC4	399694	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr15	49135625	49135625	+	Silent	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cttccgcagtgccatgggctCcccagtggttgggctgacct	13	14	0	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SHC4-95	NM_203349	exon10	c.G1464T	p.G488G	TGGGCTCCCCAGT	.	158	32	152	0	.	0	0	0	0	0	A	49135625	C	A	49135625	2	1	31	1	0	0	0	0	0	0	0	1	14308	842	30	3		3	SHC4	15	49135625	Silent	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	333264	49135625	53395767	1747	7121										
DTWD1	56986	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr15	49926822	49926822	+	Frame_Shift_Del	DEL	C	C	-													0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	attcaaaataatgttagaggCaaaaatgatgaccctgacaa					novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DTWD1-226	NM_001144955	exon4	c.498delC	p.G166fs	TAGAGGCAAAAAT	.	96	21	162	0	.	0	0	0	0	0	-	49926822	C	-	49926822	7	5	31	1	0	1	0	1	0	0	0	0	4802	697	25	0	508	0	DTWD1	15	49926822	Frame_Shift_Del	DEL	C	TCGA-OR-A5KB-01A-11D-A30A-10	791197	49926822	52604570	1748	7122										
ATP8B4	79895	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr15	50212566	50212566	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tacttgtcatccaggtctctGtatgcgatggccaaggtccg	11	11	2	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ATP8B4-140	NM_024837	exon18	c.C1800T	p.Y600Y	GTCTCTGTATGCG	.	116	32	101	0	.	0	0	0	0	0	A	50212566	G	A	50212566	2	1	31	1	0	0	0	0	0	0	0	1	1198	1372	48	3		3	ATP8B4	15	50212566	Silent	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	285744	50212566	52318826	1749	7123										
TRPM7	54822	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr15	50897135	50897135	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	aaatctagcaaacgcacataCcaaaatattatgttaagaca	4	8	1	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TRPM7-392	NM_017672	exon21	c.G2916T	p.W972C	CACATACCAAAAT	.	134	47	182	0	.	0	0	0	0	0	A	50897135	C	A	50897135	3	1	31	1	0	0	0	0	1	0	0	0	16629	508	18	3	2757	3	TRPM7	15	50897135	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	684569	50897135	51634257	1750	7124										
TRPM7	54822	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	50941083	50941083	+	Splice_Site	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ccaagcgaccacaaaaacacCtaaaagaaaaaggtgagatt	7	9	0	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TRPM7-392	NM_017672	exon5	c.123-1G>T	.	AAACACCTAAAAG	.	19	5	23	0	.	0	0	0	0	0	A	50941083	C	A	50941083	5	1	31	1	0	0	0	0	0	0	1	0	16629	695	24	3	5619	3	TRPM7	15	50941083	Splice_Site	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	43948	50941083	51590309	1751	7125										
UNC13C	440279	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr15	54305438	54305438	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	taaagtaaccaacagtgataAtgaggatctgcttcaagagc	9	7	2	3	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	UNC13C-51	NM_001080534	exon1	c.A338C	p.N113T	GTGATAATGAGGA	.	85	31	124	0	.	0	0	0	0	0	C	54305438	A	C	54305438	3	2	31	1	0	0	0	0	1	0	0	0	17024	101	4	5	340	5	UNC13C	15	54305438	Missense_Mutation	SNP	A	TCGA-OR-A5KB-01A-11D-A30A-10	3364355	54305438	48225954	1752	7126										
C2CD4A	145741	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr15	62359893	62359893	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cttctcccgggtcgggcccgCggagccaagtctcgcaccac	12	18	2	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	C2CD4A-68	NM_207322	exon2	c.C81A	p.R27R	GGCCCGCGGAGCC	.	77	38	34	0	.	0	0	0	0	0	A	62359893	C	A	62359893	2	1	31	1	0	0	0	0	0	0	0	1	2161	755	27	2		2	C2CD4A	15	62359893	Silent	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	8054455	62359893	40171499	1753	7127										
TLN2	83660	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr15	63031744	63031744	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gagatggctggccaagctcaGgtgggtgtggaggtggttgt	20	5	1	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TLN2-573	NM_015059	exon28	c.G3885T	p.Q1295H	AGCTCAGGTGGGT	.	155	74	128	0	.	0	0	0	0	0	T	63031744	G	T	63031744	3	4	31	1	0	0	0	0	1	0	0	0	15985	1014	35	3	3995	3	TLN2	15	63031744	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	671851	63031744	39499648	1754	7128										
LACTB	114294	hgsc.bcm.edu	37	chr15	63414083	63414083	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gagacgccatgtaccggctcAtgtcagcagtgactgcccgg	13	13	2	2	rs34317102	byfrequency	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	LACTB-90	NM_171846	exon1	c.A13C	p.M5L	CGGCTCATGTCAG	.	9	9	0	0	A|0.226;C|0.774	0	0	0	0	0	C	63414083	A	C	63414083	3	2	31	1	0	0	0	0	1	0	0	0	8619	217	8	5	15	5	LACTB	15	63414083	Missense_Mutation	SNP	A	TCGA-OR-A5KB-01A-11D-A30A-10	382339	63414083	39117309	1755	7129										
NOX5	79400	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr15	69347714	69347714	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	atgtacatgacatctgcactGggcaagaatgacatgaaggc	11	8	1	4	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	NOX5-136	NM_024505	exon15	c.G2040T	p.L680L	TGCACTGGGCAAG	.	161	32	199	0	.	0	0	0	0	0	T	69347714	G	T	69347714	2	4	31	1	0	0	0	0	0	0	0	1	10588	1335	47	3		3	NOX5	15	69347714	Silent	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	5933631	69347714	33183678	1756	7130										
ULK3	25989	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	75132951	75132952	+	Missense_Mutation	DNP	CC	CC	AA													0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cggagcacgtgcttctcatcCcacggggacatgtgttgtgc					novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	CC	CC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ULK3-290	NM_001099436	exon5	c.G500T	p.W178F	TCATCCCACGGGG	.	143	5	154	0	.	0	0	0	0	0	AA	75132952	CC	AA	75132951	3	1	31	1	0	0	0	0	1	0	0	0	17015	624	22	3	965	3	ULK3	15	75132951	Missense_Mutation	DNP	CC	TCGA-OR-A5KB-01A-11D-A30A-10	5785237	75132951	27398441	1757	7131										
TBC1D2B	23102	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr15	78290603	78290603	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ggcctccagctcggtcagctCcagccggactttctccaagt	10	16	2	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TBC1D2B-136	NM_015079	exon13	c.G2739A	p.W913X	TCAGCTCCAGCCG	.	210	41	233	0	.	0	0	0	0	0	T	78290603	C	T	78290603	4	4	31	1	0	0	0	0	0	1	0	0	15656	865	30	3	104	3	TBC1D2B	15	78290603	Nonsense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	3157652	78290603	24240789	1758	7132										
RASGRF1	5923	broad.mit.edu;bcgsc.ca	37	chr15	79290536	79290536	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	accttgcatttgagctcatcGttggtctcaaagtcctgccg	9	12	2	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	RASGRF1-662	NM_002891	exon20	c.C2916T	p.N972N	CTCATCGTTGGTC	.	244	8	238	0	.	0	0	0	0	0	A	79290536	G	A	79290536	2	1	31	1	0	0	0	0	0	0	0	1	13107	1136	40	1		1	RASGRF1	15	79290536	Silent	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	999933	79290536	23240856	1759	7133										
KIAA1024	23251	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr15	79749156	79749156	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tccccatgaacatcgaaaacGagtccatttcagaccaggac	7	13	1	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	KIAA1024-183	NM_015206	exon2	c.G667C	p.E223Q	GAAAACGAGTCCA	.	158	41	148	0	.	0	0	0	0	0	C	79749156	G	C	79749156	3	2	31	1	0	0	0	0	1	0	0	0	8226	1059	37	2	669	2	KIAA1024	15	79749156	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	458620	79749156	22782236	1760	7134										
ARNT2	9915	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr15	80767372	80767372	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	aactgaagcatctcatccttGaagcagctgatggatttctg	9	9	2	3	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ARNT2-175	NM_014862	exon5	c.G430C	p.E144Q	ATCCTTGAAGCAG	.	47	20	67	0	.	0	0	0	0	0	C	80767372	G	C	80767372	3	2	31	1	0	0	0	0	1	0	0	0	967	1291	45	3	448	3	ARNT2	15	80767372	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	1018216	80767372	21764020	1761	7135										
ARNT2	9915	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr15	80800576	80800576	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	aggatgtgcatgggctcgcgGcggtctttcatctgcaggat	15	9	3	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ARNT2-175	NM_014862	exon6	c.G702A	p.R234R	CTCGCGGCGGTCT	.	128	65	137	0	.	0	0	0	0	0	A	80800576	G	A	80800576	2	1	31	1	0	0	0	0	0	0	0	1	967	1190	42	3		3	ARNT2	15	80800576	Silent	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	33204	80800576	21730816	1762	7136										
ARNT2	9915	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	80869292	80869292	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ccatttccctctggacactcCgggaaggccttcaggtatgt	10	13	2	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ARNT2-175	NM_014862	exon15	c.C1599A	p.S533S	ACACTCCGGGAAG	.	128	22	121	0	.	0	0	0	0	0	A	80869292	C	A	80869292	2	1	31	1	0	0	0	0	0	0	0	1	967	639	23	2		2	ARNT2	15	80869292	Silent	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	68716	80869292	21662100	1763	7137										
KIAA1199	57214	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr15	81218065	81218065	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	aggaccacggggcctggctgCgcggcggggatgtgtggctg	21	10	0	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	KIAA1199-93	NM_018689	exon18	c.C2389A	p.R797S	TGGCTGCGCGGCG	.	131	61	100	0	.	0	0	0	0	0	A	81218065	C	A	81218065	3	1	31	1	0	0	0	0	1	0	0	0	8234	768	27	2	2455	2	KIAA1199	15	81218065	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	348773	81218065	21313327	1764	7138										
KIAA1199	57214	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr15	81224296	81224296	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gccctggagggccggcacacCagcgccctggccttccgcct	13	19	0	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	KIAA1199-93	NM_018689	exon21	c.C2709A	p.T903T	GCACACCAGCGCC	.	55	20	86	0	.	0	0	0	0	0	A	81224296	C	A	81224296	2	1	31	1	0	0	0	0	0	0	0	1	8234	581	21	3		3	KIAA1199	15	81224296	Silent	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	6231	81224296	21307096	1765	7139										
FAM154B	283726	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	82574573	82574573	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	catttcaggatgattttgttCctcaggagataaagcctagg	10	7	2	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FAM154B-70	NM_001008226	exon3	c.C367T	p.P123S	TTTGTTCCTCAGG	.	140	15	134	0	.	0	0	0	0	0	T	82574573	C	T	82574573	3	4	31	1	0	0	0	0	1	0	0	0	5480	855	30	3	377	3	FAM154B	15	82574573	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	1350277	82574573	19956819	1766	7140										
AKAP13	11214	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr15	86124843	86124843	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	aggaagcccaaatagacgatGaagcacatcctgtcctactg	9	11	0	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	AKAP13-258	NM_007200	exon7	c.G3544A	p.E1182K	GACGATGAAGCAC	.	139	22	152	0	.	0	0	0	0	0	A	86124843	G	A	86124843	3	1	31	1	0	0	0	0	1	0	0	0	449	1291	45	3	3566	3	AKAP13	15	86124843	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	3550270	86124843	16406549	1767	7141										
KLHL25	64410	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr15	86312878	86312878	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cacggtgacaggggaaggcaCggtcgcccgcccagagtgtg	17	12	0	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	KLHL25-92	NM_022480	exon2	c.G164T	p.R55L	AAGGCACGGTCGC	.	213	50	210	0	.	0	0	0	0	0	A	86312878	C	A	86312878	3	1	31	1	0	0	0	0	1	0	0	0	8401	536	19	2	1609	2	KLHL25	15	86312878	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	188035	86312878	16218514	1768	7142										
AGBL1	123624	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	86697774	86697774	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tccactgtctctgggctctgCgtgtgtttgcctccagtggt	12	12	2	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_152336	exon3	c.C238A	p.R80S	GCTCTGCGTGTGT	.	94	15	87	0	.	0	0	0	0	0	A	86697774	C	A	86697774	3	1	31	1	0	0	0	0	1	0	0	0	375	768	27	2	244	2	AGBL1	15	86697774	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	384896	86697774	15833618	1769	7143										
AGBL1	123624	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	86790916	86790916	+	Nonsense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tttcagagtcgaacggccgcAgagcagtgaaccgaggctac	13	11	1	3	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_152336	exon6	c.A403T	p.R135X	GGCCGCAGAGCAG	.	176	48	183	1	.	0	0	0	0	0	T	86790916	A	T	86790916	4	4	31	1	0	0	0	0	0	1	0	0	375	180	7	5	421	5	AGBL1	15	86790916	Nonsense_Mutation	SNP	A	TCGA-OR-A5KB-01A-11D-A30A-10	93142	86790916	15740476	1770	7144										
AGBL1	123624	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr15	86800211	86800211	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ctatgccttcccggtccccgGgtgcatcaccactgaacctc	8	18	1	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_152336	exon7	c.G725T	p.G242V	TCCCCGGGTGCAT	.	117	29	102	0	.	0	0	0	0	0	T	86800211	G	T	86800211	3	4	31	1	0	0	0	0	1	0	0	0	375	1232	43	3	747	3	AGBL1	15	86800211	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	9295	86800211	15731181	1771	7145										
NTRK3	4916	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr15	88423642	88423642	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ggcatccagcgaatggggagCatggtgtgtcctcccaccta	13	12	0	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	NTRK3-3538	NM_001012338	exon19	c.G2193T	p.M731I	GGGGAGCATGGTG	.	90	49	101	0	.	0	0	0	0	0	A	88423642	C	A	88423642	3	1	31	1	0	0	0	0	1	0	0	0	10737	710	25	3	334	3	NTRK3	15	88423642	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	1623431	88423642	14107750	1772	7146										
NTRK3	4916	broad.mit.edu	37	chr15	88678626	88678626	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	caggctcaccacacgtggggGatctgtcaagggagaagcct	14	11	3	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	NTRK3-3538	NM_001243101	exon10	c.C910A	p.P304T	GTGGGGGATCTGT	.	45	8	47	1	.	0	0	0	0	0	T	88678626	G	T	88678626	3	4	31	1	0	0	0	0	1	0	0	0	10737	1174	41	3	1915	3	NTRK3	15	88678626	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	254984	88678626	13852766	1773	7147										
ACAN	176	bcgsc.ca	37	chr15	89386842	89386842	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gccaaccagacgggctacccCgacccctcatcccgctacga	8	20	1	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ACAN-25	NM_001135	exon6	c.C1014A	p.P338P	CTACCCCGACCCC	.	133	57	102	3	.	0	0	0	0	0	A	89386842	C	A	89386842	2	1	31	1	0	0	0	0	0	0	0	1	117	639	23	2		2	ACAN	15	89386842	Silent	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	708216	89386842	13144550	1774	7148										
LRRK1	79705	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr15	101565124	101565124	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gtggtctggaacctggcgctGggggaggaggccgtggccaa	20	9	1	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	LRRK1-602	NM_024652	exon16	c.G2184A	p.L728L	GGCGCTGGGGGAG	.	101	46	107	0	.	0	0	0	0	0	A	101565124	G	A	101565124	2	1	31	1	0	0	0	0	0	0	0	1	9059	1335	47	3		3	LRRK1	15	101565124	Silent	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	12178282	101565124	966268	1775	7149										
PCSK6	5046	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr15	101922386	101922386	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	acaacgagagcttctgcgtcCaccaaaccaaatccatagaa	6	13	1	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PCSK6-46	.	.	.	.	TGCGTCCACCAAA	.	90	29	106	0	.	0	0	0	0	0	G	101922386	C	G	101922386	2	3	31	1	0	0	0	0	0	0	0	1	11633	581	21	3		3	PCSK6	15	101922386	Silent	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	357262	101922386	609006	1776	7150										
ARHGDIG	398	broad.mit.edu	37	chr16	332758	332758	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tcttcaccgacgatgacaggAcgcaccacctgtcctgggag	11	14	2	1	rs143125556	byfrequency	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ARHGDIG-90	NM_001176	exon6	c.A622G	p.T208A	GACAGGACGCACC	.	87	3	70	0	A|0.999;G|0.001	0	0	0	0	0	G	332758	A	G	332758	3	3	31	1	0	0	0	0	1	0	0	0	892	275	10	4	644	4	ARHGDIG	16	332758	Missense_Mutation	SNP	A	TCGA-OR-A5KB-01A-11D-A30A-10		332758	90021995	1777	7151										
PDIA2	64714	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr16	335179	335179	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gtcacacacagcatgcgcctGgtcacggagttcaacagcca	10	14	3	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PDIA2-91	NM_006849	exon5	c.G774C	p.L258L	GCGCCTGGTCACG	.	129	23	99	0	.	0	0	0	0	0	C	335179	G	C	335179	2	2	31	1	0	0	0	0	0	0	0	1	11697	1335	47	3		3	PDIA2	16	335179	Silent	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	2421	335179	90019574	1778	7152										
PDIA2	64714	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr16	335541	335541	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gtggacgtggcggccgacaaTgagcacgtgctgcagtactt	15	10	0	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PDIA2-91	NM_006849	exon7	c.T957A	p.N319K	CGACAATGAGCAC	.	172	33	164	0	.	0	0	0	0	0	A	335541	T	A	335541	3	1	31	1	0	0	0	0	1	0	0	0	11697	1461	51	5	983	5	PDIA2	16	335541	Missense_Mutation	SNP	T	TCGA-OR-A5KB-01A-11D-A30A-10	362	335541	90019212	1779	7153										
SOLH	6650	broad.mit.edu	37	chr16	602138	602138	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tttcccagctcggccagcgcGcccgtgggggtaacagcgct	14	15	0	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SOLH-523	NM_005632	exon10	c.G2433T	p.A811A	CAGCGCGCCCGTG	.	245	61	47	1	.	0	0	0	0	0	T	602138	G	T	602138	2	4	31	1	0	0	0	0	0	0	0	1	14960	1074	38	2		2	SOLH	16	602138	Silent	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	266597	602138	89752615	1780	7154										
C16orf13	84326	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr16	684529	684529	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cgtccacaaggtccggcctaGggaggcagggttcgtgcctc	15	13	0	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	C16orf13-22	NM_001040160	exon5	c.C615G	p.P205P	GGCCTAGGGAGGC	.	127	35	136	0	.	0	0	0	0	0	C	684529	G	C	684529	2	2	31	1	0	0	0	0	0	0	0	1	1815	987	35	3		3	C16orf13	16	684529	Silent	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	82391	684529	89670224	1781	7155										
TELO2	9894	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr16	1551665	1551665	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gttccttgtttccttaaagcAcgtccctcgttccagccacg	7	15	0	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TELO2-90	NM_016111	exon11	c.A1363G	p.T455A	TAAAGCACGTCCC	.	68	29	48	0	.	0	0	0	0	0	G	1551665	A	G	1551665	3	3	31	1	0	0	0	0	1	0	0	0	15794	173	6	4	1401	4	TELO2	16	1551665	Missense_Mutation	SNP	A	TCGA-OR-A5KB-01A-11D-A30A-10	867136	1551665	88803088	1782	7156										
CRAMP1L	57585	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr16	1706047	1706048	+	Frame_Shift_Ins	INS	-	-	C													0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gtgcactggcaggagggcggINSccggtgcaagcagagtgcca					novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_020825	exon9	c.1289_1290insC	p.G430fs	AGGGCGGCCGGTG	.	141	59	55	0	.	0	0	0	0	0	C	1706048	-	C	1706047	7	5	31	1	0	1	1	0	0	0	0	0	3852	1203	42	0	1323	0	CRAMP1L	16	1706047	Frame_Shift_Ins	INS	-	TCGA-OR-A5KB-01A-11D-A30A-10	154382	1706047	88648706	1783	7157	72	2								
CRAMP1L	57585	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	chr16	1706050	1706050	+	Missense_Mutation	SNP	G	G	T													0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gcactggcaggagggcggccGgtgcaagcagagtgccaagg					novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_020825	exon9	c.G1292T	p.R431L	GCGGCCGGTGCAA	.	146	66	54	0	.	0	0	0	0	0	T	1706050	G	T	1706050	3	4	31	1	0	0	0	0	1	0	0	0	3852	1116	39	2	1326	2	CRAMP1L	16	1706050	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	3	1706050	88648703	1784	7158	72	2								
ZNF598	90850	hgsc.bcm.edu	37	chr16	2049527	2049527	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cggcatccggggtgggcaggGgccgccgagcgctgggaagt	21	11	0	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ZNF598-432	NM_178167	exon11	c.C2023T	p.P675S	GGCAGGGGCCGCC	.	26	21	0	0	.	0	0	0	0	0	A	2049527	G	A	2049527	3	1	31	1	0	0	0	0	1	0	0	0	18065	1232	43	3	707	3	ZNF598	16	2049527	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	343477	2049527	88305226	1785	7159										
SLC9A3R2	9351	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr16	2079600	2079600	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	caggtggtgcaaaggatcaaGgctgtggaggggcagactcg	18	7	1	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SLC9A3R2-23	NM_004785	exon2	c.G231T	p.K77N	GATCAAGGCTGTG	.	151	25	124	0	.	0	0	0	0	0	T	2079600	G	T	2079600	3	4	31	1	0	0	0	0	1	0	0	0	14750	991	35	3	237	3	SLC9A3R2	16	2079600	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	30073	2079600	88275153	1786	7160										
E4F1	1877	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr16	2284352	2284352	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ccactcagacgagcggccctAcccttgtcccaagtgtggca	10	16	1	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	E4F1-187	NM_004424	exon10	c.A1556G	p.Y519C	GGCCCTACCCTTG	.	355	156	262	0	.	0	0	0	0	0	G	2284352	A	G	2284352	3	3	31	1	0	0	0	0	1	0	0	0	4885	391	14	4	1594	4	E4F1	16	2284352	Missense_Mutation	SNP	A	TCGA-OR-A5KB-01A-11D-A30A-10	204752	2284352	88070401	1787	7161										
SRRM2	23524	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr16	2816143	2816143	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gatctcgagcctctccagccActcaccggcgatccaggtcc	9	18	3	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SRRM2-93	NM_016333	exon11	c.A5614T	p.T1872S	CCAGCCACTCACC	.	161	73	155	0	.	0	0	0	0	0	T	2816143	A	T	2816143	3	4	31	1	0	0	0	0	1	0	0	0	15206	159	6	5	5652	5	SRRM2	16	2816143	Missense_Mutation	SNP	A	TCGA-OR-A5KB-01A-11D-A30A-10	531791	2816143	87538610	1788	7162										
SRRM2	23524	hgsc.bcm.edu	37	chr16	2817254	2817256	+	In_Frame_Del	DEL	TAG	TAG	-													0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ctctgcggcagccatgaaccTagccagcgccaggacacctg					novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	TAG	TAG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SRRM2-93	NM_016333	exon11	c.6725_6727del	p.2242_2243del	TGAACCTAGCCAG	.	106	0	115	0	.	0	0	0	0	0	-	2817256	TAG	-	2817254	7	5	31	1	0	1	0	1	0	0	0	0	15206	1522	53	0	6763	0	SRRM2	16	2817254	In_Frame_Del	DEL	TAG	TCGA-OR-A5KB-01A-11D-A30A-10	1111	2817254	87537499	1789	7163	73	2								
SRRM2	23524	bcgsc.ca	37	chr16	2817256	2817256	+	Missense_Mutation	SNP	G	G	A													0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ctgcggcagccatgaacctaGccagcgccaggacacctgcc					rs139489601	alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SRRM2-93	NM_016333	exon11	c.G6727A	p.A2243T	AACCTAGCCAGCG	.	108	21	116	2	G|1.000;C|0.000	0	0	0	0	0	A	2817256	G	A	2817256	3	1	31	1	0	0	0	0	1	0	0	0	15206	971	34	3	6765	3	SRRM2	16	2817256	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	2	2817256	87537497	1790	7164	73	2								
MEFV	4210	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr16	3296527	3296527	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cacaggacctcgctgtacctGtgcaagatgtctccaatgtc	9	13	1	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MEFV-228	NM_000243	exon6	c.C1608T	p.H536H	GTACCTGTGCAAG	.	70	21	61	1	.	0	0	0	0	0	A	3296527	G	A	3296527	2	1	31	1	0	0	0	0	0	0	0	1	9487	1368	48	3		3	MEFV	16	3296527	Silent	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	479271	3296527	87058226	1791	7165										
C16orf90	646174	hgsc.bcm.edu;mdanderson.org	37	chr16	3544850	3544850	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ggggtgcgtcagggtggccgGggcgtccttgggcctggctc	21	11	1	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_001080524	exon2	c.C74A	p.P25H	TGGCCGGGGCGTC	.	50	22	8	0	.	0	0	0	0	0	T	3544850	G	T	3544850	3	4	31	1	0	0	0	0	1	0	0	0	1847	1232	43	3	482	3	C16orf90	16	3544850	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	248323	3544850	86809903	1792	7166										
ADCY9	115	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr16	4164589	4164589	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tggatgcagccgtggagcagCcccctgctcagcagctccca	12	16	1	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ADCY9-139	NM_001116	exon2	c.G855T	p.G285G	GAGCAGCCCCCTG	.	87	36	78	0	.	0	0	0	0	0	A	4164589	C	A	4164589	2	1	31	1	0	0	0	0	0	0	0	1	301	726	26	3		3	ADCY9	16	4164589	Silent	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	619739	4164589	86190164	1793	7167										
TEKT5	146279	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	10769881	10769882	+	Missense_Mutation	DNP	CC	CC	AA													0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	agagatgcgggcgttgaaggCcaggttggtgtctgtgaact					novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	CC	CC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TEKT5-92	NM_144674	exon5	c.G1020T	p.A341S	GAAGGCCAGGTTG	.	134	4	111	0	.	0	0	0	0	0	AA	10769882	CC	AA	10769881	3	1	31	1	0	0	0	0	1	0	0	0	15793	739	26	3	448	3	TEKT5	16	10769881	Missense_Mutation	DNP	CC	TCGA-OR-A5KB-01A-11D-A30A-10	6605292	10769881	79584872	1794	7168										
CIITA	4261	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr16	11000690	11000690	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cggcttccccagtacgacttTgtcttctctgtcccctgcca	7	17	2	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CIITA-226	NM_000246	exon11	c.T1341G	p.F447L	CGACTTTGTCTTC	.	83	19	62	0	.	0	0	0	0	0	G	11000690	T	G	11000690	3	3	31	1	0	0	0	0	1	0	0	0	3434	1809	63	5	1383	5	CIITA	16	11000690	Missense_Mutation	SNP	T	TCGA-OR-A5KB-01A-11D-A30A-10	230809	11000690	79354063	1795	7169										
KIAA0430	9665	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr16	15732947	15732947	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ttagtcttgcatatagttacCgtttggggactatgtggcag	12	6	1	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	KIAA0430-90	NM_014647	exon2	c.G144C	p.T48T	AGTTACCGTTTGG	.	86	36	139	0	.	0	0	0	0	0	G	15732947	C	G	15732947	2	3	31	1	0	0	0	0	0	0	0	1	8198	666	23	2		2	KIAA0430	16	15732947	Silent	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	4732257	15732947	74621806	1796	7170										
XYLT1	64131	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr16	17228440	17228440	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tcgctcaggctgtggatgccGtcaggctcatcgtagacatt	12	11	3	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	XYLT1-94	NM_022166	exon9	c.C1917G	p.D639E	GATGCCGTCAGGC	.	96	18	78	1	.	0	0	0	0	0	C	17228440	G	C	17228440	3	2	31	1	0	0	0	0	1	0	0	0	17501	1136	40	2	978	2	XYLT1	16	17228440	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	1495493	17228440	73126313	1797	7171										
C16orf62	57020	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr16	19628040	19628040	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	acggtccagaaccagctggtGgtccaaggagtggagctccc	14	12	0	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	C16orf62-69	NM_020314	exon14	c.G1401T	p.V467V	GCTGGTGGTCCAA	.	162	45	140	0	.	0	0	0	0	0	T	19628040	G	T	19628040	2	4	31	1	0	0	0	0	0	0	0	1	1829	1335	47	3		3	C16orf62	16	19628040	Silent	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	2399600	19628040	70726713	1798	7172										
GP2	2813	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr16	20327304	20327304	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gagtgatgggccccaaatctAgaacccgggctaggtcgatg	14	10	1	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GP2-94	NM_001007240	exon10	c.T1484G	p.L495R	AAATCTAGAACCC	.	116	57	120	1	.	0	0	0	0	0	C	20327304	A	C	20327304	3	2	31	1	0	0	0	0	1	0	0	0	6602	420	15	5	141	5	GP2	16	20327304	Missense_Mutation	SNP	A	TCGA-OR-A5KB-01A-11D-A30A-10	699264	20327304	70027449	1799	7173										
GP2	2813	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr16	20331586	20331586	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ggtgtgaaagccacttacctCcagaatgttcctgcaggcac	10	12	0	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GP2-94	NM_001007240	exon6	c.G865T	p.E289X	TTACCTCCAGAAT	.	93	27	110	0	.	0	0	0	0	0	A	20331586	C	A	20331586	4	1	31	1	0	0	0	0	0	1	0	0	6602	864	30	3	776	3	GP2	16	20331586	Nonsense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	4282	20331586	70023167	1800	7174										
GP2	2813	bcgsc.ca	37	chr16	20335325	20335325	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ccattcagccacatgggagcGtctgtctggcatcggtgcac	12	13	3	0	rs12930599	byfrequency	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GP2-94	NM_001502	exon3	c.C348T	p.D116D	GGGAGCGTCTGTC	.	192	7	215	1	G|0.865;A|0.135	0	0	0	0	0	A	20335325	G	A	20335325	2	1	31	1	0	0	0	0	0	0	0	1	6602	1136	40	1		1	GP2	16	20335325	Silent	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	3739	20335325	70019428	1801	7175										
ACSM2A	123876	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr16	20476935	20476935	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	aactgagtgaaaacagccagCaggcagccaacgtcctctcg	10	13	1	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ACSM2A-91	NM_001010845	exon4	c.C274T	p.Q92X	AGCCAGCAGGCAG	.	443	57	400	0	.	0	0	0	0	0	T	20476935	C	T	20476935	4	4	31	1	0	0	0	0	0	1	0	0	183	711	25	3	280	3	ACSM2A	16	20476935	Nonsense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	141610	20476935	69877818	1802	7176										
HS3ST2	9956	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	chr16	22825984	22825984	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	acctcagccgcggagggcgcGcaggctgctcttcgccttca	13	16	3	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	HS3ST2-516	NM_006043	exon1	c.G53A	p.R18H	GGGCGCGCAGGCT	.	85	51	14	0	.	0	0	0	0	0	A	22825984	G	A	22825984	3	1	31	1	0	0	0	0	1	0	0	0	7385	1087	38	1	55	1	HS3ST2	16	22825984	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	2349049	22825984	67528769	1803	7177										
HS3ST2	9956	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr16	22926624	22926624	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gcgactcatcactgacccggCcggcgagatggggcgagtcc	15	14	2	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	HS3ST2-516	NM_006043	exon2	c.C845A	p.A282D	ACCCGGCCGGCGA	.	138	68	138	0	.	0	0	0	0	0	A	22926624	C	A	22926624	3	1	31	1	0	0	0	0	1	0	0	0	7385	739	26	3	851	3	HS3ST2	16	22926624	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	100640	22926624	67428129	1804	7178										
ERN2	10595	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr16	23716290	23716290	+	Silent	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	atgtggccccagcggagggcGaggaaatgcagagtgtctcg	17	9	1	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ERN2-322	NM_033266	exon8	c.C912G	p.L304L	GAGGGCGAGGAAA	.	212	91	73	0	.	0	0	0	0	0	C	23716290	G	C	23716290	2	2	31	1	0	0	0	0	0	0	0	1	5251	1045	37	2		2	ERN2	16	23716290	Silent	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	789666	23716290	66638463	1805	7179										
CACNG3	10368	broad.mit.edu;bcgsc.ca	37	chr16	24373179	24373179	+	Frame_Shift_Del	DEL	G	G	-													0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ccaacaggcgcaccacgcccGtctgaactgacctctgacct					novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CACNG3-90	NM_006539	exon4	c.943delG	p.V315fs	ACGCCCGTCTGAA	.	28	9	32	0	.	0	0	0	0	0	-	24373179	G	-	24373179	7	5	31	1	0	1	0	1	0	0	0	0	2564	1145	40	0	957	0	CACNG3	16	24373179	Frame_Shift_Del	DEL	G	TCGA-OR-A5KB-01A-11D-A30A-10	656889	24373179	65981574	1806	7180										
RBBP6	5930	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr16	24582830	24582830	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	actgactatgacaccagagaGtattcaagttccaaacgtag	8	9	1	3	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	RBBP6-230	NM_006910	exon18	c.G4443T	p.E1481D	CAGAGAGTATTCA	.	78	19	81	0	.	0	0	0	0	0	T	24582830	G	T	24582830	3	4	31	1	0	0	0	0	1	0	0	0	13138	1020	36	3	4567	3	RBBP6	16	24582830	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	209651	24582830	65771923	1807	7181										
SLC5A11	115584	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr16	24909414	24909414	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gtgttccctgggatggtcagCcgcatcctcttcccaggtga	12	13	2	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SLC5A11-92	NM_052944	exon10	c.C990G	p.S330R	GGTCAGCCGCATC	.	68	16	51	0	.	0	0	0	0	0	G	24909414	C	G	24909414	3	3	31	1	0	0	0	0	1	0	0	0	14698	738	26	3	1024	3	SLC5A11	16	24909414	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	326584	24909414	65445339	1808	7182										
C16orf82	162083	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr16	27078584	27078584	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gccatgccagcctgagcagcGggtacgcaggggacaaggag	17	11	0	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_001145545	exon1	c.G268T	p.G90W	AGCAGCGGGTACG	.	64	19	66	0	.	0	0	0	0	0	T	27078584	G	T	27078584	3	4	31	1	0	0	0	0	1	0	0	0	1842	1116	39	2	270	2	C16orf82	16	27078584	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	2169170	27078584	63276169	1809	7183										
KIAA0556	23247	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr16	27709688	27709688	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gagacccctgtctgcaacccGcaaaactctttgcgaggctg	10	14	2	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	KIAA0556-141	NM_015202	exon9	c.G980T	p.R327L	CAACCCGCAAAAC	.	79	16	59	0	.	0	0	0	0	0	T	27709688	G	T	27709688	3	4	31	1	0	0	0	0	1	0	0	0	8204	1087	38	2	1014	2	KIAA0556	16	27709688	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	631104	27709688	62645065	1810	7184										
SH2B1	25970	broad.mit.edu	37	chr16	28878275	28878275	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gggaggagggcagcctcagtGgcagaagtgtcgcctgctgc	18	10	1	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SH2B1-92	NM_001145796	exon2	c.G860T	p.W287L	CTCAGTGGCAGAA	.	16	3	23	0	.	0	0	0	0	0	T	28878275	G	T	28878275	3	4	31	1	0	0	0	0	1	0	0	0	14262	1357	47	3	862	3	SH2B1	16	28878275	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	1168587	28878275	61476478	1811	7185										
NFATC2IP	84901	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr16	28970367	28970367	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gagacgtcccaacagctccaGctccgggtgcagggaaagga	14	12	0	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	NFATC2IP-91	NM_032815	exon7	c.G1047T	p.Q349H	GCTCCAGCTCCGG	.	254	92	239	0	.	0	0	0	0	0	T	28970367	G	T	28970367	3	4	31	1	0	0	0	0	1	0	0	0	10392	962	34	3	1073	3	NFATC2IP	16	28970367	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	92092	28970367	61384386	1812	7186										
C16orf92	146378	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr16	30035165	30035165	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	agccaggctgctggctgtggCccagtttattggagagaaac	14	9	0	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	C16orf92-68	NM_001109660	exon2	c.C248A	p.A83D	CTGTGGCCCAGTT	.	137	72	119	0	.	0	0	0	0	0	A	30035165	C	A	30035165	3	1	31	1	0	0	0	0	1	0	0	0	1849	739	26	3	268	3	C16orf92	16	30035165	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	1064798	30035165	60319588	1813	7187										
FBXL19	54620	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	30958250	30958250	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tccccactccgcgagaccctGgtgcacctcaatcttgctgg	9	17	2	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FBXL19-661	NM_001099784	exon10	c.G1887T	p.L629L	GACCCTGGTGCAC	.	155	39	104	1	.	0	0	0	0	0	T	30958250	G	T	30958250	2	4	31	1	0	0	0	0	0	0	0	1	5734	1335	47	3		3	FBXL19	16	30958250	Silent	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	923085	30958250	59396503	1814	7188										
TRIM72	493829	hgsc.bcm.edu	37	chr16	31235631	31235631	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ggacccgcgccagttcgacaAggcggtggcggtggtggcgc	19	12	0	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TRIM72-44	NM_001008274	exon7	c.A989T	p.K330M	TCGACAAGGCGGT	.	60	12	0	0	.	0	0	0	0	0	T	31235631	A	T	31235631	3	4	31	1	0	0	0	0	1	0	0	0	16583	72	3	5	1011	5	TRIM72	16	31235631	Missense_Mutation	SNP	A	TCGA-OR-A5KB-01A-11D-A30A-10	277381	31235631	59119122	1815	7189										
ITGAX	3687	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	31374306	31374306	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tccgtggacgtagacagcgaCggcagcaccgacctggtcct	13	14	0	1	rs147598964	byfrequency	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ITGAX-229	NM_000887	exon13	c.C1410T	p.D470D	CAGCGACGGCAGC	.	201	37	170	0	C|0.998;T|0.002	0	0	0	0	0	T	31374306	C	T	31374306	2	4	31	1	0	0	0	0	0	0	0	1	7910	535	19	1		1	ITGAX	16	31374306	Silent	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	138675	31374306	58980447	1816	7190										
ARMC5	79798	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr16	31477303	31477303	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gaccctgcccttcatctgccGgtgagtgggaagtgggtgcc	15	12	2	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ARMC5-24	NM_001105247	exon5	c.G1997T	p.R666L	TCTGCCGGTGAGT	.	61	28	73	0	.	0	0	0	0	0	T	31477303	G	T	31477303	3	4	31	1	0	0	0	0	1	0	0	0	955	1130	39	2	2329	2	ARMC5	16	31477303	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	102997	31477303	58877450	1817	7191										
SHCBP1	79801	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr16	46637518	46637518	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	taatggccaggacaaacaatAacagtgtcaccttcgaagca	8	10	1	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SHCBP1-154	NM_024745	exon8	c.T1146G	p.V382V	AACAATAACAGTG	.	334	148	282	0	.	0	0	0	0	0	C	46637518	A	C	46637518	2	2	31	1	0	0	0	0	0	0	0	1	14309	349	13	5		5	SHCBP1	16	46637518	Silent	SNP	A	TCGA-OR-A5KB-01A-11D-A30A-10	15160215	46637518	43717235	1818	7192										
ABCC12	94160	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr16	48134826	48134826	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gccataggcgtgaatgatgcCcaggccctgcatggaggagg	16	10	0	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ABCC12-93	NM_033226	exon21	c.G2995T	p.G999C	TGATGCCCAGGCC	.	203	78	188	0	.	0	0	0	0	0	A	48134826	C	A	48134826	3	1	31	1	0	0	0	0	1	0	0	0	52	623	22	3	1120	3	ABCC12	16	48134826	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	1497308	48134826	42219927	1819	7193										
ABCC12	94160	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr16	48173122	48173122	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gatatcccgatgagagctgtGggccccagaatgaaaaaggc	13	9	0	3	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ABCC12-93	NM_033226	exon5	c.C783A	p.P261P	AGCTGTGGGCCCC	.	116	22	108	0	.	0	0	0	0	0	T	48173122	G	T	48173122	2	4	31	1	0	0	0	0	0	0	0	1	52	1335	47	3		3	ABCC12	16	48173122	Silent	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	38296	48173122	42181631	1820	7194										
ABCC11	85320	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	48234290	48234290	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gggcgtccacagcagacaggGggtcgtccagcaggtagatc	16	11	0	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ABCC11-95	NM_033151	exon14	c.C1979T	p.P660L	GACAGGGGGTCGT	.	150	78	135	1	.	0	0	0	0	0	A	48234290	G	A	48234290	3	1	31	1	0	0	0	0	1	0	0	0	51	1232	43	3	2233	3	ABCC11	16	48234290	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	61168	48234290	42120463	1821	7195										
NOD2	64127	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr16	50744557	50744557	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	acctatgatggagcagagacGctctgcctggaggacatata	12	9	1	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	NOD2-231	NM_022162	exon4	c.G735T	p.T245T	AGAGACGCTCTGC	.	129	28	140	0	.	0	0	0	0	0	T	50744557	G	T	50744557	2	4	31	1	0	0	0	0	0	0	0	1	10546	1074	38	2		2	NOD2	16	50744557	Silent	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	2510267	50744557	39610196	1822	7196										
SALL1	6299	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr16	51173113	51173113	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tctgacaagcaaatgttttgCcacaaatgtcacaagcagtg	8	9	2	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SALL1-98	NM_002968	exon2	c.G3020C	p.G1007A	GTTTTGCCACAAA	.	120	23	145	0	.	0	0	0	0	0	G	51173113	C	G	51173113	3	3	31	1	0	0	0	0	1	0	0	0	13845	739	26	3	962	3	SALL1	16	51173113	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	428556	51173113	39181640	1823	7197										
SALL1	6299	bcgsc.ca	37	chr16	51175720	51175720	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tgtggctgccgctggaagtgCcgctgccgcttttgttagca	14	11	0	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SALL1-98	NM_002968	exon2	c.G413C	p.G138A	GAAGTGCCGCTGC	.	110	47	70	3	.	0	0	0	0	0	G	51175720	C	G	51175720	3	3	31	1	0	0	0	0	1	0	0	0	13845	739	26	3	3569	3	SALL1	16	51175720	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	2607	51175720	39179033	1824	7198										
IRX6	79190	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr16	55360430	55360430	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	atctatggagcaccctatgcGgccgctgcagctgcccagag	12	14	1	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	IRX6-174	NM_024335	exon2	c.G228T	p.A76A	CTATGCGGCCGCT	.	126	56	86	0	.	0	0	0	0	0	T	55360430	G	T	55360430	2	4	31	1	0	0	0	0	0	0	0	1	7869	1103	39	2		2	IRX6	16	55360430	Silent	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	4184710	55360430	34994323	1825	7199										
IRX6	79190	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr16	55362936	55362936	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ctacccatgcttggagaaacCgcgcatctggtctctggcgc	11	14	2	1	rs200996745	alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	IRX6-174	NM_024335	exon5	c.C1046A	p.P349Q	AGAAACCGCGCAT	.	156	31	127	0	C|0.999;T|0.000	0	0	0	0	0	A	55362936	C	A	55362936	3	1	31	1	0	0	0	0	1	0	0	0	7869	652	23	2	1064	2	IRX6	16	55362936	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	2506	55362936	34991817	1826	7200										
NUP93	9688	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr16	56782300	56782300	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gagcgcctgcgttcccgtacCctaacacgcacgtcccagga	10	17	0	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	NUP93-205	NM_014669	exon2	c.C141G	p.T47T	CCGTACCCTAACA	.	77	32	93	0	.	0	0	0	0	0	G	56782300	C	G	56782300	2	3	31	1	0	0	0	0	0	0	0	1	10801	610	22	3		3	NUP93	16	56782300	Silent	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	1419364	56782300	33572453	1827	7201										
SLC12A3	6559	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr16	56936360	56936360	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gatgaggccactgtcaacgaGatgcggcgggactgcccctg	15	12	1	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SLC12A3-155	NM_000339	exon24	c.G2823A	p.E941E	CAACGAGATGCGG	.	157	28	146	0	.	0	0	0	0	0	A	56936360	G	A	56936360	2	1	31	1	0	0	0	0	0	0	0	1	14419	933	33	3		3	SLC12A3	16	56936360	Silent	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	154060	56936360	33418393	1828	7202										
CCDC135	84229	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	57732900	57732900	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ctgtgcccggaccgcgtgccCctcttcctgcaccccctgaa	9	20	1	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CCDC135-90	NM_032269	exon3	c.C342A	p.P114P	CGTGCCCCTCTTC	.	114	24	109	0	.	0	0	0	0	0	A	57732900	C	A	57732900	2	1	31	1	0	0	0	0	0	0	0	1	2775	610	22	3		3	CCDC135	16	57732900	Silent	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	796540	57732900	32621853	1829	7203										
CCDC135	84229	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	57735916	57735916	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	aactgctttgacttcagtacGctgctctgctccatgcttat	7	12	2	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CCDC135-90	NM_032269	exon5	c.G573C	p.T191T	CAGTACGCTGCTC	.	195	25	189	0	.	0	0	0	0	0	C	57735916	G	C	57735916	2	2	31	1	0	0	0	0	0	0	0	1	2775	1074	38	2		2	CCDC135	16	57735916	Silent	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	3016	57735916	32618837	1830	7204										
SLC38A7	55238	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr16	58713931	58713931	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ttcccactcactcttgggggCtgtgtccacacagggactct	10	14	3	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SLC38A7-69	NM_018231	exon3	c.G100T	p.A34S	TGGGGGCTGTGTC	.	80	32	85	0	.	0	0	0	0	0	A	58713931	C	A	58713931	3	1	31	1	0	0	0	0	1	0	0	0	14644	797	28	3	1328	3	SLC38A7	16	58713931	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	978015	58713931	31640822	1831	7205										
GOT2	2806	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr16	58768113	58768113	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cgatcccggggaggacgcggCcggagtgcagcagggccatg	19	12	0	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GOT2-91	NM_002080	exon1	c.G20T	p.G7V	ACGCGGCCGGAGT	.	127	44	15	0	.	0	0	0	0	0	A	58768113	C	A	58768113	3	1	31	1	0	0	0	0	1	0	0	0	6601	739	26	3	1312	3	GOT2	16	58768113	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	54182	58768113	31586640	1832	7206										
CDH8	1006	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr16	61851398	61851398	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	aataccttataggactggaaGtgatatcagggtcacgagca	11	7	2	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CDH8-161	NM_001796	exon7	c.C1262G	p.T421S	CTGGAAGTGATAT	.	134	53	146	0	.	0	0	0	0	0	C	61851398	G	C	61851398	3	2	31	1	0	0	0	0	1	0	0	0	3122	1029	36	3	1161	3	CDH8	16	61851398	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	3083285	61851398	28503355	1833	7207										
TRADD	8717	hgsc.bcm.edu	37	chr16	67189373	67189373	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cgcagctccagttgcagcggCaccgagtgctgggcgagcgc	16	14	0	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TRADD-659	NM_003789	exon3	c.G336T	p.V112V	CAGCGGCACCGAG	.	22	13	3	0	.	0	0	0	0	0	A	67189373	C	A	67189373	2	1	31	1	0	0	0	0	0	0	0	1	16474	697	25	3		3	TRADD	16	67189373	Silent	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	5337975	67189373	23165380	1834	7208										
FAM65A	79567	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	67579578	67579579	+	Missense_Mutation	DNP	CG	CG	TT													0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ttttttcagtgctactggtgCggaatctgaactcggatgat					novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	CG	CG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FAM65A-92	NM_001193523	exon19	c.G3263T	p.R1088L	TGGTGCGGAATCT	.	118	21	141	0	.	0	0	0	0	0	TT	67579579	CG	TT	67579578	3	4	31	1	0	0	0	0	1	0	0	0	5618	759	27	1	3272	1	FAM65A	16	67579578	Missense_Mutation	DNP	CG	TCGA-OR-A5KB-01A-11D-A30A-10	390205	67579578	22775175	1835	7209										
DPEP3	64180	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	68012505	68012505	+	Missense_Mutation	SNP	G	G	T													0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ggcagtctggtcctgggactGgcatgagacggaggctgacc					novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DPEP3-71	NM_001129758	exon3	c.C514A	p.Q172K	GGGACTGGCATGA	.	171	37	136	1	.	0	0	0	0	0	T	68012505	G	T	68012505	3	4	31	1	0	0	0	0	1	0	0	0	4726	1357	47	3	1059	3	DPEP3	16	68012505	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	432927	68012505	22342248	1836	7210	74	2								
DPEP3	64180	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	68012506	68012506	+	Nonsense_Mutation	SNP	G	G	T													0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gcagtctggtcctgggactgGcatgagacggaggctgacca					novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DPEP3-71	NM_001129758	exon3	c.C513A	p.C171X	GGACTGGCATGAG	.	170	37	136	0	.	0	0	0	0	0	T	68012506	G	T	68012506	4	4	31	1	0	0	0	0	0	1	0	0	4726	1195	42	3	1060	3	DPEP3	16	68012506	Nonsense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	1	68012506	22342247	1837	7211	74	2								
SMPD3	55512	bcgsc.ca	37	chr16	68398924	68398924	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tgggcggcaaccctaccttgCggggcatgcaggtgtgtgca	16	11	0	0	rs1868158	byfrequency	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SMPD3-91	NM_018667	exon4	c.G1395A	p.P465P	ACCTTGCGGGGCA	.	189	6	136	0	C|0.368;T|0.632	0	0	0	0	0	T	68398924	C	T	68398924	2	4	31	1	0	0	0	0	0	0	0	1	14841	755	27	1		1	SMPD3	16	68398924	Silent	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	386418	68398924	21955829	1838	7212										
PDPR	55066	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr16	70182454	70182454	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tcatgctctacatccccataGaggtgagagggcacccttcc	9	14	2	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PDPR-135	NM_017990	exon17	c.G2050A	p.E684K	CCCATAGAGGTGA	.	405	56	342	0	.	0	0	0	0	0	A	70182454	G	A	70182454	3	1	31	1	0	0	0	0	1	0	0	0	11718	943	33	3	2108	3	PDPR	16	70182454	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	1783530	70182454	20172299	1839	7213										
FUK	197258	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr16	70512517	70512517	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	agaatgcccacagcctggtaCggcaaactgaggagtgtgct	13	10	0	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FUK-91	NM_145059	exon22	c.C2893T	p.R965W	CTGGTACGGCAAA	.	65	29	49	0	.	0	0	0	0	0	T	70512517	C	T	70512517	3	4	31	1	0	0	0	0	1	0	0	0	6115	527	19	1	2975	1	FUK	16	70512517	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	330063	70512517	19842236	1840	7214										
DHX38	9785	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	72144969	72144969	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	agaagcgcagccccctgggcAgtgtcaggtgagctccggcc	15	14	1	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DHX38-227	NM_014003	exon26	c.A3592T	p.S1198C	CTGGGCAGTGTCA	.	104	17	36	0	.	0	0	0	0	0	T	72144969	A	T	72144969	3	4	31	1	0	0	0	0	1	0	0	0	4522	188	7	5	3690	5	DHX38	16	72144969	Missense_Mutation	SNP	A	TCGA-OR-A5KB-01A-11D-A30A-10	1632452	72144969	18209784	1841	7215										
ZFHX3	463	ucsc.edu;bcgsc.ca	37	chr16	72993272	72993272	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ccacattgttgggaacatctTtggatacgcaggagcttttg	11	8	1	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ZFHX3-72	NM_006885	exon2	c.A773T	p.K258I	ACATCTTTGGATA	.	116	60	135	2	.	0	0	0	0	0	A	72993272	T	A	72993272	3	1	31	1	0	0	0	0	1	0	0	0	17671	1841	64	5	10374	5	ZFHX3	16	72993272	Missense_Mutation	SNP	T	TCGA-OR-A5KB-01A-11D-A30A-10	848303	72993272	17361481	1842	7216										
ADAT1	23536	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr16	75637040	75637040	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ttagcagcttctggaatgatCtgaagagttccactttgctg	10	8	2	3	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ADAT1-92	NM_012091	exon10	c.G1319T	p.R440I	AATGATCTGAAGA	.	111	13	125	0	.	0	0	0	0	0	A	75637040	C	A	75637040	3	1	31	1	0	0	0	0	1	0	0	0	284	913	32	3	197	3	ADAT1	16	75637040	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	2643768	75637040	14717713	1843	7217										
CNTNAP4	85445	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr16	76486501	76486501	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tgccagacttctctggagagGaggaggtttctgccactttt	12	9	2	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CNTNAP4-70	NM_138994	exon7	c.G949T	p.E317X	GGAGAGGAGGAGG	.	64	21	92	0	.	0	0	0	0	0	T	76486501	G	T	76486501	4	4	31	1	0	0	0	0	0	1	0	0	3655	1175	41	3	1211	3	CNTNAP4	16	76486501	Nonsense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	849461	76486501	13868252	1844	7218										
CNTNAP4	85445	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr16	76555117	76555117	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tccacggagaacttagcgcgGatgtatctttcttttttaag	9	8	2	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CNTNAP4-70	NM_138994	exon15	c.G2227C	p.D743H	AGCGCGGATGTAT	.	34	15	60	0	.	0	0	0	0	0	C	76555117	G	C	76555117	3	2	31	1	0	0	0	0	1	0	0	0	3655	1174	41	3	2521	3	CNTNAP4	16	76555117	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	68616	76555117	13799636	1845	7219										
VAT1L	57687	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr16	77913114	77913114	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	caagagcttcttcagctttgCaaaatcagtaagtatccagg	8	9	3	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	VAT1L-90	NM_020927	exon6	c.C875A	p.A292E	GCTTTGCAAAATC	.	161	30	252	1	.	0	0	0	0	0	A	77913114	C	A	77913114	3	1	31	1	0	0	0	0	1	0	0	0	17168	710	25	3	897	3	VAT1L	16	77913114	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	1357997	77913114	12441639	1846	7220										
C16orf74	404550	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	85743810	85743810	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ggcagcatcatgcccgtgggGgtggggggcgtgatgatgat	20	7	1	3	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	C16orf74-22	NM_206967	exon3	c.C132A	p.T44T	CGTGGGGGTGGGG	.	79	29	58	1	.	0	0	0	0	0	T	85743810	G	T	85743810	2	4	31	1	0	0	0	0	0	0	0	1	1837	1219	43	3		3	C16orf74	16	85743810	Silent	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	7830696	85743810	4610943	1847	7221										
ZCCHC14	23174	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	87445728	87445728	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ggacagcgccgggctggagcTgggggctgggcagctgggca	22	10	0	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ZCCHC14-154	NM_015144	exon12	c.A2188T	p.S730C	TGGAGCTGGGGGC	.	59	11	58	0	.	0	0	0	0	0	A	87445728	T	A	87445728	3	1	31	1	0	0	0	0	1	0	0	0	17620	1580	55	5	669	5	ZCCHC14	16	87445728	Missense_Mutation	SNP	T	TCGA-OR-A5KB-01A-11D-A30A-10	1701918	87445728	2909025	1848	7222										
ZFPM1	161882	hgsc.bcm.edu	37	chr16	88599697	88599705	+	In_Frame_Del	DEL	AGCCTCTGG	AGCCTCTGG	-													0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	caacggagaggccagagcggAgcctctggcccagaatggag					novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	AGCCTCTGG	AGCCTCTGG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ZFPM1-90	NM_153813	exon10	c.1331_1339del	p.444_447del	GAGCGGAGCCTCT	.	26	0	1	0	.	0	0	0	0	0	-	88599705	AGCCTCTGG	-	88599697	7	5	31	1	0	1	0	1	0	0	0	0	17694	304	11	0	1369	0	ZFPM1	16	88599697	In_Frame_Del	DEL	AGCCTCTGG	TCGA-OR-A5KB-01A-11D-A30A-10	1153969	88599697	1755056	1849	7223										
VPS53	55275	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	505108	505108	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	catcttccaggaagggattgGtagatgggggtggagactca	16	6	2	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	VPS53-90	NM_001128159	exon12	c.C1145T	p.T382I	GGATTGGTAGATG	.	79	22	79	0	.	0	0	0	0	0	A	505108	G	A	505108	3	1	31	1	0	0	0	0	1	0	0	0	17253	1261	44	3	1412	3	VPS53	17	505108	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10		505108	80690102	1850	7224										
OR1A2	26189	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	3101229	3101229	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	acaacaattatgagtccacgGtcttgtatcctgcttattgc	7	10	1	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OR1A2-70	NM_012352	exon1	c.G417T	p.R139R	TCCACGGTCTTGT	.	214	46	232	0	.	0	0	0	0	0	T	3101229	G	T	3101229	2	4	31	1	0	0	0	0	0	0	0	1	10979	1248	44	3		3	OR1A2	17	3101229	Silent	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	2596121	3101229	78093981	1851	7225										
TRPV1	7442	broad.mit.edu;bcgsc.ca	37	chr17	3470249	3470249	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tgcctctcttaaaagggggaCcagggcaaagttcttccagt	11	10	2	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TRPV1-23	NM_018727	exon16	c.G2380T	p.V794F	GGGGGACCAGGGC	.	87	36	76	2	.	0	0	0	0	0	A	3470249	C	A	3470249	3	1	31	1	0	0	0	0	1	0	0	0	16633	507	18	3	143	3	TRPV1	17	3470249	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	369020	3470249	77724961	1852	7226										
GSG2	83903	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	3628702	3628702	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	caacgctgtgagaagattggGgaaggggtgtttggcgaagt	18	4	0	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GSG2-297	NM_031965	exon1	c.G1473T	p.G491G	GATTGGGGAAGGG	.	146	27	163	0	.	0	0	0	0	0	T	3628702	G	T	3628702	2	4	31	1	0	0	0	0	0	0	0	1	6843	1219	43	3		3	GSG2	17	3628702	Silent	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	158453	3628702	77566508	1853	7227										
ITGAE	3682	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	3655152	3655152	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gcccactcagtatgcgtgccAaggagaaagaaccatcctgt	10	12	1	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ITGAE-161	NM_002208	exon15	c.T1685C	p.L562S	CGTGCCAAGGAGA	.	204	54	221	0	.	0	0	0	0	0	G	3655152	A	G	3655152	3	3	31	1	0	0	0	0	1	0	0	0	7906	131	5	4	1922	4	ITGAE	17	3655152	Missense_Mutation	SNP	A	TCGA-OR-A5KB-01A-11D-A30A-10	26450	3655152	77540058	1854	7228										
ZZEF1	23140	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	3955316	3955316	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cgtagcaaagatcaaagtcaTcgcaaacattgcagttcatc	7	10	3	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ZZEF1-93	NM_015113	exon35	c.A5549T	p.D1850V	AAGTCATCGCAAA	.	110	23	128	0	.	0	0	0	0	0	A	3955316	T	A	3955316	3	1	31	1	0	0	0	0	1	0	0	0	18292	1435	50	5	3420	5	ZZEF1	17	3955316	Missense_Mutation	SNP	T	TCGA-OR-A5KB-01A-11D-A30A-10	300164	3955316	77239894	1855	7229										
ZZEF1	23140	hgsc.bcm.edu;bcgsc.ca	37	chr17	3959640	3959640	+	Splice_Site	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	catcttcttcactccattggCtgaaagaaggacataaagag	8	9	3	3	rs60052193	alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ZZEF1-93	NM_015113	exon34	c.5166-1G>T	.	CATTGGCTGAAAG	.	56	10	55	0	.	0	0	0	0	0	A	3959640	C	A	3959640	5	1	31	1	0	0	0	0	0	0	1	0	18292	811	28	3	3812	3	ZZEF1	17	3959640	Splice_Site	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	4324	3959640	77235570	1856	7230										
ZZEF1	23140	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	3973982	3973982	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cctgtaataaagttaccataTttttgcagcttctcatataa	4	8	1	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ZZEF1-93	NM_015113	exon26	c.A4071T	p.K1357N	ACCATATTTTTGC	.	56	26	56	0	.	0	0	0	0	0	A	3973982	T	A	3973982	3	1	31	1	0	0	0	0	1	0	0	0	18292	1490	52	5	4934	5	ZZEF1	17	3973982	Missense_Mutation	SNP	T	TCGA-OR-A5KB-01A-11D-A30A-10	14342	3973982	77221228	1857	7231										
SPNS3	201305	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	4351540	4351540	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ctgccgagacacagggggagGgggccgtgggaggcttcagg	21	9	1	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SPNS3-153	NM_182538	exon6	c.G712T	p.G238W	GGGGAGGGGGCCG	.	98	42	65	0	.	0	0	0	0	0	T	4351540	G	T	4351540	3	4	31	1	0	0	0	0	1	0	0	0	15113	1232	43	3	734	3	SPNS3	17	4351540	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	377558	4351540	76843670	1858	7232										
MYBBP1A	10514	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr17	4453405	4453405	+	Frame_Shift_Del	DEL	C	C	-													0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gttgttggtgctgaagtcaaCcaaggagtccaggtctggct					novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MYBBP1A-92	NM_014520	exon9	c.1267delG	p.V423fs	AGTCAACCAAGGA	.	163	41	215	0	.	0	0	0	0	0	-	4453405	C	-	4453405	7	5	31	1	0	1	0	1	0	0	0	0	10036	507	18	0	2831	0	MYBBP1A	17	4453405	Frame_Shift_Del	DEL	C	TCGA-OR-A5KB-01A-11D-A30A-10	101865	4453405	76741805	1859	7233	75	2								
MYBBP1A	10514	bcgsc.ca	37	chr17	4453406	4453406	+	Missense_Mutation	SNP	C	C	A													0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ttgttggtgctgaagtcaacCaaggagtccaggtctggctg					novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MYBBP1A-92	NM_014520	exon9	c.G1266T	p.L422F	GTCAACCAAGGAG	.	161	41	214	0	.	0	0	0	0	0	A	4453406	C	A	4453406	3	1	31	1	0	0	0	0	1	0	0	0	10036	593	21	3	2832	3	MYBBP1A	17	4453406	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	1	4453406	76741804	1860	7234	75	2								
KIF1C	10749	ucsc.edu;bcgsc.ca	37	chr17	4926821	4926821	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ctgggccccgcctgaaggatCagaggcagcagaggaggcag	17	11	1	3	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	KIF1C-92	NM_006612	exon23	c.C2687A	p.S896X	AAGGATCAGAGGC	.	230	51	123	2	.	0	0	0	0	0	A	4926821	C	A	4926821	4	1	31	1	0	0	0	0	0	1	0	0	8306	838	29	3	2769	3	KIF1C	17	4926821	Nonsense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	473415	4926821	76268389	1861	7235										
NLRP1	22861	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	5436275	5436275	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	agaaggcacgcacaagagttCcaccggtactacctctgggg	12	12	1	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	NLRP1-274	NM_001033053	exon11	c.G3175T	p.E1059X	AGAGTTCCACCGG	.	109	41	108	0	.	0	0	0	0	0	A	5436275	C	A	5436275	4	1	31	1	0	0	0	0	0	1	0	0	10500	864	30	3	1349	3	NLRP1	17	5436275	Nonsense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	509454	5436275	75758935	1862	7236										
TP53	7157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	7578413	7578413	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	atggtgggggcagcgcctcaCaacctccgtcatgtgctgtg	14	12	2	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TP53-70225	NM_000546	exon5	c.G517T	p.V173L	GCCTCACAACCTC	.	176	72	159	0	.	0	0	0	0	0	A	7578413	C	A	7578413	3	1	31	1	0	0	0	0	1	0	0	0	16419	478	17	3	781	3	TP53	17	7578413	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	2142138	7578413	73616797	1863	7237										
TP53	7157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	7578534	7578534	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ttggccagttggcaaaacatCttgttgagggcaggggagta	15	6	1	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TP53-70225	NM_000546	exon5	c.G396C	p.K132N	AAACATCTTGTTG	.	89	18	80	0	.	0	0	0	0	0	G	7578534	C	G	7578534	3	3	31	1	0	0	0	0	1	0	0	0	16419	912	32	3	902	3	TP53	17	7578534	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	121	7578534	73616676	1864	7238										
PER1	5187	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	8053364	8053364	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gcggcccttgccccggcgctCtggcggcagtcgaagcttga	15	15	1	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PER1-723	NM_002616	exon4	c.G454C	p.E152Q	GGCGCTCTGGCGG	.	99	28	138	0	.	0	0	0	0	0	G	8053364	C	G	8053364	3	3	31	1	0	0	0	0	1	0	0	0	11758	922	32	3	3498	3	PER1	17	8053364	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	474830	8053364	73141846	1865	7239										
AURKB	9212	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	8110524	8110524	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cctggatttcgatctctctgCgcagctgatgctccacgccc	9	16	2	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	AURKB-1508	NM_004217	exon5	c.G368A	p.R123H	TCTCTGCGCAGCT	.	93	24	75	0	.	0	0	0	0	0	T	8110524	C	T	8110524	3	4	31	1	0	0	0	0	1	0	0	0	1224	768	27	1	686	1	AURKB	17	8110524	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	57160	8110524	73084686	1866	7240										
PIK3R6	146850	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	8741937	8741937	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tgggctcttaccgggatctcGctcgaccttcttgtgcaggg	13	12	3	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	.	.	.	.	GATCTCGCTCGAC	.	75	29	76	0	.	0	0	0	0	0	T	8741937	G	T	8741937	2	4	31	1	0	0	0	0	0	0	0	1	11952	1095	38	2		2	PIK3R6	17	8741937	Silent	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	631413	8741937	72453273	1867	7241										
USP43	124739	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	9631601	9631601	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cattgaaagaggtccagccgGggtgccctgtccctcggctc	13	14	0	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	USP43-637	NM_153210	exon15	c.G2666T	p.G889V	CAGCCGGGGTGCC	.	266	112	252	0	.	0	0	0	0	0	T	9631601	G	T	9631601	3	4	31	1	0	0	0	0	1	0	0	0	17112	1232	43	3	2724	3	USP43	17	9631601	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	889664	9631601	71563609	1868	7242										
GLP2R	9340	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	9792935	9792935	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	caggaccatgcacgctggccCcggggcagcagcctgtccga	14	16	0	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GLP2R-524	NM_004246	exon13	c.C1575A	p.P525P	CTGGCCCCGGGGC	.	101	42	89	0	.	0	0	0	0	0	A	9792935	C	A	9792935	2	1	31	1	0	0	0	0	0	0	0	1	6473	610	22	3		3	GLP2R	17	9792935	Silent	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	161334	9792935	71402275	1869	7243										
MYH13	8735	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	10227550	10227550	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ttttgatgagtccttcacacCgttcctcagcgtccatcaga	7	13	3	3	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MYH13-6	NM_003802	exon23	c.G2723T	p.R908L	TCACACCGTTCCT	.	93	21	74	0	.	0	0	0	0	0	A	10227550	C	A	10227550	3	1	31	1	0	0	0	0	1	0	0	0	10060	652	23	2	3169	2	MYH13	17	10227550	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	434615	10227550	70967660	1870	7244										
MYH8	4626	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	10293878	10293878	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ggcctcctccagctcatgctGgagtttgcggaatttagata	11	10	1	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MYH8-101	NM_002472	exon40	c.C5707A	p.Q1903K	CATGCTGGAGTTT	.	66	13	81	0	.	0	0	0	0	0	T	10293878	G	T	10293878	3	4	31	1	0	0	0	0	1	0	0	0	10069	1357	47	3	110	3	MYH8	17	10293878	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	66328	10293878	70901332	1871	7245										
MYH8	4626	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr17	10303798	10303798	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tctccagcttctgtttgaccCgctgcaagttgtcaatctgc	8	13	4	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MYH8-101	NM_002472	exon27	c.G3644T	p.R1215L	TTGACCCGCTGCA	.	55	24	46	0	.	0	0	0	0	0	A	10303798	C	A	10303798	3	1	31	1	0	0	0	0	1	0	0	0	10069	652	23	2	2225	2	MYH8	17	10303798	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	9920	10303798	70891412	1872	7246										
MYH8	4626	bcgsc.ca	37	chr17	10304060	10304060	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tttggctcgggacgccctctCtgcctcgatttcttccccca	8	17	2	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MYH8-101	NM_002472	exon27	c.G3382T	p.E1128X	CCCTCTCTGCCTC	.	30	17	33	1	.	0	0	0	0	0	A	10304060	C	A	10304060	4	1	31	1	0	0	0	0	0	1	0	0	10069	922	32	3	2487	3	MYH8	17	10304060	Nonsense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	262	10304060	70891150	1873	7247										
MYH4	4622	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	10353829	10353829	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gtctcgtacttggtcctccaCtgggcaacctcactgttggc	10	14	2	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MYH4-102	NM_017533	exon30	c.G4122T	p.Q1374H	CCTCCACTGGGCA	.	131	20	115	0	.	0	0	0	0	0	A	10353829	C	A	10353829	3	1	31	1	0	0	0	0	1	0	0	0	10065	564	20	3	1741	3	MYH4	17	10353829	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	49769	10353829	70841381	1874	7248										
MYH4	4622	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	10356511	10356511	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ttggttttagctttggtcagGgtgttgactttgtcctcctc	11	8	1	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MYH4-102	NM_017533	exon24	c.C3069A	p.T1023T	GGTCAGGGTGTTG	.	162	75	224	0	.	0	0	0	0	0	T	10356511	G	T	10356511	2	4	31	1	0	0	0	0	0	0	0	1	10065	1219	43	3		3	MYH4	17	10356511	Silent	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	2682	10356511	70838699	1875	7249										
MYH4	4622	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	10357111	10357111	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cttcctcatcctcagctcttTcagttacctctttgattttg	4	13	5	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MYH4-102	NM_017533	exon23	c.A2783G	p.E928G	GCTCTTTCAGTTA	.	193	39	258	0	.	0	0	0	0	0	C	10357111	T	C	10357111	3	2	31	1	0	0	0	0	1	0	0	0	10065	1783	62	4	3108	4	MYH4	17	10357111	Missense_Mutation	SNP	T	TCGA-OR-A5KB-01A-11D-A30A-10	600	10357111	70838099	1876	7250										
MYH4	4622	ucsc.edu;bcgsc.ca	37	chr17	10363404	10363404	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	atggctttggccagagcaccCactgcattgtacaccttcaa	8	13	1	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MYH4-102	NM_017533	exon14	c.G1281C	p.V427V	AGCACCCACTGCA	.	178	79	217	3	.	0	0	0	0	0	G	10363404	C	G	10363404	2	3	31	1	0	0	0	0	0	0	0	1	10065	581	21	3		3	MYH4	17	10363404	Silent	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	6293	10363404	70831806	1877	7251										
MYH1	4619	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	10402002	10402002	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gtctcatatttggtcctccaCtgggcaacctcactgttggc	9	13	2	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MYH1-171	NM_005963	exon30	c.G4122A	p.Q1374Q	CCTCCACTGGGCA	.	102	37	88	0	.	0	0	0	0	0	T	10402002	C	T	10402002	2	4	31	1	0	0	0	0	0	0	0	1	10057	564	20	3		3	MYH1	17	10402002	Silent	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	38598	10402002	70793208	1878	7252										
MYH1	4619	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	10408289	10408289	+	Silent	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tctgtctctgcacttttgagGaggggtttgatcttgaaata	11	6	3	3	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MYH1-171	NM_005963	exon22	c.C2529A	p.L843L	TTTGAGGAGGGGT	.	83	28	63	0	.	0	0	0	0	0	T	10408289	G	T	10408289	2	4	31	1	0	0	0	0	0	0	0	1	10057	1161	41	3		3	MYH1	17	10408289	Silent	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	6287	10408289	70786921	1879	7253										
MYH2	4620	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	10428845	10428845	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	aggcattctttatcttgaacAgctcagtgccaagggaacgg	11	9	3	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MYH2-194	NM_017534	exon32	c.T4460A	p.L1487Q	TTGAACAGCTCAG	.	57	10	62	0	.	0	0	0	0	0	T	10428845	A	T	10428845	3	4	31	1	0	0	0	0	1	0	0	0	10063	188	7	5	1401	5	MYH2	17	10428845	Missense_Mutation	SNP	A	TCGA-OR-A5KB-01A-11D-A30A-10	20556	10428845	70766365	1880	7254										
MYH3	4621	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	10535908	10535908	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cctccatcttcttcttgagcCggatggcttcattcctgctc	7	15	4	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MYH3-95	NM_002470	exon34	c.G4841T	p.R1614L	TTGAGCCGGATGG	.	60	27	64	0	.	0	0	0	0	0	A	10535908	C	A	10535908	3	1	31	1	0	0	0	0	1	0	0	0	10064	652	23	2	1013	2	MYH3	17	10535908	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	107063	10535908	70659302	1881	7255										
DNAH9	1770	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	11592948	11592948	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cgagatccagcagatggaatCcactatggcctccatttctg	9	12	1	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DNAH9-168	NM_001372	exon20	c.C3809A	p.S1270Y	TGGAATCCACTAT	.	82	31	110	0	.	0	0	0	0	0	A	11592948	C	A	11592948	3	1	31	1	0	0	0	0	1	0	0	0	4619	855	30	3	3887	3	DNAH9	17	11592948	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	1057040	11592948	69602262	1882	7256										
DNAH9	1770	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	11725237	11725237	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tgtgctccattttttcccagGggagatcccagatctctact	8	12	1	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DNAH9-168	NM_001372	exon46	c.G8708C	p.G2903A	TCCCAGGGGAGAT	.	75	21	61	0	.	0	0	0	0	0	C	11725237	G	C	11725237	3	2	31	1	0	0	0	0	1	0	0	0	4619	1246	43	3	8890	3	DNAH9	17	11725237	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	132289	11725237	69469973	1883	7257										
DNAH9	1770	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	11738038	11738038	+	Silent	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gcagacaaactgattcaggtCgtgggtgtggagactgacaa	14	7	1	4	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DNAH9-168	NM_001372	exon49	c.C9330A	p.V3110V	TCAGGTCGTGGGT	.	267	46	233	0	.	0	0	0	0	0	A	11738038	C	A	11738038	2	1	31	1	0	0	0	0	0	0	0	1	4619	871	31	2		2	DNAH9	17	11738038	Silent	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	12801	11738038	69457172	1884	7258										
DNAH9	1770	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	11772530	11772530	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	actcaaatgtcagcaagaagCcgaagtgaccgcagtcacca	9	12	3	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DNAH9-168	NM_001372	exon51	c.C10013A	p.A3338D	AAGAAGCCGAAGT	.	36	4	50	0	.	0	0	0	0	0	A	11772530	C	A	11772530	3	1	31	1	0	0	0	0	1	0	0	0	4619	739	26	3	10215	3	DNAH9	17	11772530	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	34492	11772530	69422680	1885	7259										
MYOCD	93649	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	12656026	12656026	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cgctgggtccctgccggacaCcttcaatgatgcctccccct	9	18	1	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MYOCD-93	NM_001146312	exon10	c.C1421A	p.T474N	CGGACACCTTCAA	.	137	30	113	0	.	0	0	0	0	0	A	12656026	C	A	12656026	3	1	31	1	0	0	0	0	1	0	0	0	10115	507	18	3	1459	3	MYOCD	17	12656026	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	883496	12656026	68539184	1886	7260										
HS3ST3A1	9955	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr17	13504387	13504387	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	agcaagaacttccggaagatGctgcgggacagcggctcggc	15	11	0	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	HS3ST3A1-515	NM_006042	exon1	c.C60A	p.S20R	GAAGATGCTGCGG	.	166	42	94	0	.	0	0	0	0	0	T	13504387	G	T	13504387	3	4	31	1	0	0	0	0	1	0	0	0	7386	1310	46	3	1168	3	HS3ST3A1	17	13504387	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	848361	13504387	67690823	1887	7261										
TBC1D26	353149	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	15638662	15638662	+	Splice_Site	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gggatgactttgtcttgcagGatggagatggatggggaccc	17	6	1	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TBC1D26-90	.	.	.	.	TTGCAGGATGGAG	.	258	63	264	0	.	0	0	0	0	0	A	15638662	G	A	15638662	5	1	31	1	0	0	0	0	0	0	1	0	15653	1188	41	3	2	3	TBC1D26	17	15638662	Splice_Site	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	2134275	15638662	65556548	1888	7262										
PEMT	10400	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	17415964	17415964	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ctggctcagcatggcctgcgTgaagctgtgggcaggggatg	18	9	1	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PEMT-90	NM_001267552	exon4	c.A325G	p.T109A	CCTGCGTGAAGCT	.	179	73	113	0	.	0	0	0	0	0	C	17415964	T	C	17415964	3	2	31	1	0	0	0	0	1	0	0	0	11755	1696	59	4	401	4	PEMT	17	17415964	Missense_Mutation	SNP	T	TCGA-OR-A5KB-01A-11D-A30A-10	1777302	17415964	63779246	1889	7263										
RAI1	10743	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	17701546	17701546	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ccaggcctgacggcccagctGacccggccaagcagggccca	13	18	0	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	RAI1-91	NM_030665	exon3	c.G5284C	p.D1762H	CCAGCTGACCCGG	.	70	13	14	0	.	0	0	0	0	0	C	17701546	G	C	17701546	3	2	31	1	0	0	0	0	1	0	0	0	13042	1290	45	3	5286	3	RAI1	17	17701546	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	285582	17701546	63493664	1890	7264										
FLII	2314	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	18148680	18148680	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cagattacctggcaggccttCaggctcagcttgatctccac	9	14	3	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FLII-91	NM_002018	exon29	c.G3663C	p.L1221L	GGCCTTCAGGCTC	.	127	57	150	0	.	0	0	0	0	0	G	18148680	C	G	18148680	2	3	31	1	0	0	0	0	0	0	0	1	5944	813	29	3		3	FLII	17	18148680	Silent	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	447134	18148680	63046530	1891	7265										
MAP2K3	5606	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr17	21201734	21201734	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ctccattctaggaaaatccaAgaggaagaaggatctacgga	10	8	2	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MAP2K3-790	NM_145109	exon2	c.A59G	p.K20R	AATCCAAGAGGAA	.	190	28	225	0	.	0	0	0	0	0	G	21201734	A	G	21201734	3	3	31	1	0	0	0	0	1	0	0	0	9266	72	3	4	65	4	MAP2K3	17	21201734	Missense_Mutation	SNP	A	TCGA-OR-A5KB-01A-11D-A30A-10	3053054	21201734	59993476	1892	7266										
SARM1	23098	hgsc.bcm.edu	37	chr17	26699121	26699121	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cgccatgtcgggcccacggcGgggcgccgagcggctggcgg	20	15	0	0	rs7212814		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_015077	exon1	c.G68C	p.R23P	CACGGCGGGGCGC	.	8	8	0	0	G|0.001;C|0.999	0	0	0	0	0	C	26699121	G	C	26699121	3	2	31	1	0	0	0	0	1	0	0	0	13877	1116	39	2	70	2	SARM1	17	26699121	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	5497387	26699121	54496089	1893	7267										
PIPOX	51268	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	27383223	27383224	+	Missense_Mutation	DNP	GG	GG	AA													0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	caagctggcccctgtggtggGgaagatcctgtatgaattaa					novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	GG	GG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PIPOX-90	NM_016518	exon8	c.G1074A	p.G358E	GGTGGGGAAGATC	.	104	12	133	0	.	0	0	0	0	0	AA	27383224	GG	AA	27383223	3	1	31	1	0	0	0	0	1	0	0	0	11972	1232	43	3	1103	3	PIPOX	17	27383223	Missense_Mutation	DNP	GG	TCGA-OR-A5KB-01A-11D-A30A-10	684102	27383223	53811987	1894	7268										
ABHD15	116236	bcgsc.ca	37	chr17	27889986	27889986	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gtcgttgcggtcccagtaggTatcccagctgatggggaagc	15	10	0	1	rs542939	byfrequency	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ABHD15-90	NM_198147	exon2	c.A1000G	p.T334A	AGTAGGTATCCCA	.	81	5	114	2	T|0.268;C|0.732	0	0	0	0	0	C	27889986	T	C	27889986	3	2	31	1	0	0	0	0	1	0	0	0	81	1638	57	4	410	4	ABHD15	17	27889986	Missense_Mutation	SNP	T	TCGA-OR-A5KB-01A-11D-A30A-10	506763	27889986	53305224	1895	7269										
GIT1	28964	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr17	27901828	27901830	+	In_Frame_Del	DEL	GGC	GGC	-													0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	agcagctggaagtccactggGgcgccgggctctgggggcac					novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	GGC	GGC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GIT1-251	NM_001085454	exon21	c.2203_2205del	p.735_735del	CACTGGGGCGCCG	.	57	10	54	0	.	0	0	0	0	0	-	27901830	GGC	-	27901828	7	5	31	1	0	1	0	1	0	0	0	0	6416	1219	43	0	111	0	GIT1	17	27901828	In_Frame_Del	DEL	GGC	TCGA-OR-A5KB-01A-11D-A30A-10	11842	27901828	53293382	1896	7270										
EFCAB5	374786	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	28407846	28407846	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gggaacatcttcttctggaaCcagtcccgtaataagcatga	9	10	3	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	EFCAB5-70	NM_198529	exon17	c.C3273T	p.N1091N	CTGGAACCAGTCC	.	155	34	189	0	.	0	0	0	0	0	T	28407846	C	T	28407846	2	4	31	1	0	0	0	0	0	0	0	1	4949	506	18	3		3	EFCAB5	17	28407846	Silent	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	506018	28407846	52787364	1897	7271										
CPD	1362	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	28748840	28748840	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ggaacttacaaccttacagtAgttttaactgggtaagaatt	8	6	0	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CPD-92	NM_001304	exon4	c.A1296T	p.V432V	TACAGTAGTTTTA	.	68	18	77	0	.	0	0	0	0	0	T	28748840	A	T	28748840	2	4	31	1	0	0	0	0	0	0	0	1	3804	407	15	5		5	CPD	17	28748840	Silent	SNP	A	TCGA-OR-A5KB-01A-11D-A30A-10	340994	28748840	52446370	1898	7272										
CRLF3	51379	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	29120477	29120477	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tagcagcataccatgaggcaCcaatgtggaatgacctatct	9	10	1	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CRLF3-90	NM_015986	exon5	c.G817C	p.V273L	GAGGCACCAATGT	.	111	46	120	0	.	0	0	0	0	0	G	29120477	C	G	29120477	3	3	31	1	0	0	0	0	1	0	0	0	3894	507	18	3	527	3	CRLF3	17	29120477	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	371637	29120477	52074733	1899	7273										
SPACA3	124912	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	31322454	31322454	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ctcaagccctgtttcttctcCttctgtgagtggaccacgga	9	13	4	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SPACA3-92	NM_173847	exon2	c.C62A	p.P21H	CTTCTCCTTCTGT	.	130	20	131	0	.	0	0	0	0	0	A	31322454	C	A	31322454	3	1	31	1	0	0	0	0	1	0	0	0	15008	681	24	3	68	3	SPACA3	17	31322454	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	2201977	31322454	49872756	1900	7274										
UNC45B	146862	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	33498375	33498375	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	catcctgtactcggtggccaCcaccctggtgaactgcacca	9	16	0	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	UNC45B-157	NM_173167	exon13	c.C1730A	p.T577N	TGGCCACCACCCT	.	179	82	154	2	.	0	0	0	0	0	A	33498375	C	A	33498375	3	1	31	1	0	0	0	0	1	0	0	0	17027	507	18	3	1776	3	UNC45B	17	33498375	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	2175921	33498375	47696835	1901	7275										
UNC45B	146862	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	33504573	33504573	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	acacagagggatgggcttcaGaactatgaggctctcctagg	13	9	2	3	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	UNC45B-157	NM_173167	exon17	c.G2205T	p.Q735H	GCTTCAGAACTAT	.	79	45	63	0	.	0	0	0	0	0	T	33504573	G	T	33504573	3	4	31	1	0	0	0	0	1	0	0	0	17027	933	33	3	2267	3	UNC45B	17	33504573	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	6198	33504573	47690637	1902	7276										
SLFN5	162394	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	33592239	33592239	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ggaaagcaaagttcatcactCagacagcaagggatggccca	11	10	3	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SLFN5-92	NM_144975	exon5	c.C2008T	p.Q670X	ATCACTCAGACAG	.	184	26	221	0	.	0	0	0	0	0	T	33592239	C	T	33592239	4	4	31	1	0	0	0	0	0	1	0	0	14772	827	29	3	2022	3	SLFN5	17	33592239	Nonsense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	87666	33592239	47602971	1903	7277										
SLFN13	146857	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	33768243	33768243	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tggacaatccttttctctctGagtgatggtttttgccttcc	8	10	2	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SLFN13-91	NM_144682	exon6	c.C2065G	p.Q689E	CTCTCTGAGTGAT	.	118	23	120	0	.	0	0	0	0	0	C	33768243	G	C	33768243	3	2	31	1	0	0	0	0	1	0	0	0	14771	1299	45	3	632	3	SLFN13	17	33768243	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	176004	33768243	47426967	1904	7278										
STARD3	10948	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	37818535	37818535	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gccctgggggcttcatcgtgCtcaagtcggccagtaacccc	12	15	2	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	STARD3-90	NM_006804	exon14	c.C1171T	p.L391F	ATCGTGCTCAAGT	.	146	46	120	0	.	0	0	0	0	0	T	37818535	C	T	37818535	3	4	31	1	0	0	0	0	1	0	0	0	15294	797	28	3	1234	3	STARD3	17	37818535	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	4050292	37818535	43376675	1905	7279										
MED24	9862	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	38179422	38179422	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gaaccagtagacgccgcccaTgtgcagcagggtgtcaaaga	13	11	1	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MED24-187	NM_014815	exon20	c.A2212G	p.M738V	CGCCCATGTGCAG	.	238	114	221	2	.	0	0	0	0	0	C	38179422	T	C	38179422	3	2	31	1	0	0	0	0	1	0	0	0	9470	1464	51	4	785	4	MED24	17	38179422	Missense_Mutation	SNP	T	TCGA-OR-A5KB-01A-11D-A30A-10	360887	38179422	43015788	1906	7280										
WIPF2	147179	broad.mit.edu	37	chr17	38430251	38430251	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ccactgtccggtctttcttgGgtgagtagctagctatctgt	11	10	3	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	WIPF2-93	NM_133264	exon6	c.G1180T	p.D394Y	TTCTTGGGTGAGT	.	41	8	46	1	.	0	0	0	0	0	T	38430251	G	T	38430251	3	4	31	1	0	0	0	0	1	0	0	0	17406	1246	43	3	1198	3	WIPF2	17	38430251	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	250829	38430251	42764959	1907	7281										
KRT20	54474	ucsc.edu	37	chr17	39041305	39041305	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gtgtctggagttggagatgcGgatgccccggcctccagcac	15	12	1	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	KRT20-155	NM_019010	exon1	c.C133T	p.R45C	AGATGCGGATGCC	.	53	9	54	1	.	0	0	0	0	0	A	39041305	G	A	39041305	3	1	31	1	0	0	0	0	1	0	0	0	8479	1116	39	1	1173	1	KRT20	17	39041305	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	611054	39041305	42153905	1908	7282										
KRTAP9-8	83901	broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr17	39394402	39394402	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tgcagcagcacaccctgctgCcagccctcctgctgtgtgtc	10	17	0	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	KRTAP9-8-1	NM_031963	exon1	c.C99G	p.C33W	CTGCTGCCAGCCC	.	94	19	110	1	.	0	0	0	0	0	G	39394402	C	G	39394402	3	3	31	1	0	0	0	0	1	0	0	0	8598	747	26	3	101	3	KRTAP9-8	17	39394402	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	353097	39394402	41800808	1909	7283										
KRT36	8689	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	39645883	39645883	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cagaaccagcccccgctcccCacaaagccagaggtgtggca	10	17	0	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	KRT36-90	NM_003771	exon1	c.G234T	p.V78V	GCTCCCCACAAAG	.	118	36	105	0	.	0	0	0	0	0	A	39645883	C	A	39645883	2	1	31	1	0	0	0	0	0	0	0	1	8494	581	21	3		3	KRT36	17	39645883	Silent	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	251481	39645883	41549327	1910	7284										
KRT14	3861	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	39742633	39742633	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ctcagcaggccgctgcctctGgtaccagtcacggatcttca	10	15	5	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	KRT14-91	NM_000526	exon1	c.C454G	p.Q152E	GCCTCTGGTACCA	.	238	52	242	0	.	0	0	0	0	0	C	39742633	G	C	39742633	3	2	31	1	0	0	0	0	1	0	0	0	8472	1357	47	3	996	3	KRT14	17	39742633	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	96750	39742633	41452577	1911	7285										
KRT16	3868	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	39766464	39766464	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tcgcgggaagaataggattgGccagatgcttgctgggagga	17	6	0	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	KRT16-91	NM_005557	exon7	c.C1305T	p.G435G	GGATTGGCCAGAT	.	284	57	263	0	.	0	0	0	0	0	A	39766464	G	A	39766464	2	1	31	1	0	0	0	0	0	0	0	1	8474	1190	42	3		3	KRT16	17	39766464	Silent	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	23831	39766464	41428746	1912	7286										
ACLY	47	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	40054039	40054039	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ttggccttctttgcaggcgcCacctcatcggccctggactc	10	16	2	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ACLY-228	NM_001096	exon13	c.G1392T	p.V464V	AGGCGCCACCTCA	.	70	35	66	0	.	0	0	0	0	0	A	40054039	C	A	40054039	2	1	31	1	0	0	0	0	0	0	0	1	143	581	21	3		3	ACLY	17	40054039	Silent	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	287575	40054039	41141171	1913	7287										
GHDC	84514	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	40344460	40344460	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ccgttcacggagaggcgctcCagggttcccggcagctatcg	14	14	1	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GHDC-90	NM_001142623	exon5	c.G688A	p.G230R	GCGCTCCAGGGTT	.	82	39	62	0	.	0	0	0	0	0	T	40344460	C	T	40344460	3	4	31	1	0	0	0	0	1	0	0	0	6389	603	21	3	1017	3	GHDC	17	40344460	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	290421	40344460	40850750	1914	7288										
ITGA2B	3674	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	42452028	42452028	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tccatccccccacactcaccTgagcttcccctcggggcagg	8	20	1	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ITGA2B-228	NM_000419	exon28	c.A2942T	p.Q981L	CTCACCTGAGCTT	.	94	18	96	1	.	0	0	0	0	0	A	42452028	T	A	42452028	3	1	31	1	0	0	0	0	1	0	0	0	7897	1594	55	5	189	5	ITGA2B	17	42452028	Missense_Mutation	SNP	T	TCGA-OR-A5KB-01A-11D-A30A-10	2107568	42452028	38743182	1915	7289										
ADAM11	4185	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	42847371	42847371	+	Nonsense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cacctcctctcctcgcaataCgtggagcgccacttcagccg	8	18	2	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ADAM11-227	NM_002390	exon4	c.C336G	p.Y112X	GCAATACGTGGAG	.	144	24	103	0	.	0	0	0	0	0	G	42847371	C	G	42847371	4	3	31	1	0	0	0	0	0	1	0	0	235	547	19	2	350	2	ADAM11	17	42847371	Nonsense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	395343	42847371	38347839	1916	7290										
EFTUD2	9343	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr17	42930702	42930703	+	Frame_Shift_Ins	INS	-	-	TC													0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tataaactgcagagacgcaaINStctgcaggggcctggacctc					novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	EFTUD2-91	NM_004247	exon25	c.2523_2524insGA	p.D841fs	GACGCAATCTGCA	.	109	43	117	0	.	0	0	0	0	0	TC	42930703	-	TC	42930702	7	5	31	1	0	1	1	0	0	0	0	0	4972	98	4	0	411	0	EFTUD2	17	42930702	Frame_Shift_Ins	INS	-	TCGA-OR-A5KB-01A-11D-A30A-10	83331	42930702	38264508	1917	7291										
WNT3	7473	broad.mit.edu;ucsc.edu	37	chr17	44846126	44846126	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ctcacagctgcccgacagccCgtggcacttgcatttgaggt	11	14	1	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	WNT3-522	NM_030753	exon4	c.G628T	p.A210S	ACAGCCCGTGGCA	.	125	22	120	2	.	0	0	0	0	0	A	44846126	C	A	44846126	3	1	31	1	0	0	0	0	1	0	0	0	17426	652	23	2	443	2	WNT3	17	44846126	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	1915424	44846126	36349084	1918	7292										
OSBPL7	114881	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	45894628	45894628	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cccctggatcttacctggtgTgtggggataacaggggctga	15	9	1	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OSBPL7-68	NM_145798	exon8	c.A696T	p.T232T	CTGGTGTGTGGGG	.	33	18	63	0	.	0	0	0	0	0	A	45894628	T	A	45894628	2	1	31	1	0	0	0	0	0	0	0	1	11311	1683	59	5		5	OSBPL7	17	45894628	Silent	SNP	T	TCGA-OR-A5KB-01A-11D-A30A-10	1048502	45894628	35300582	1919	7293										
IGF2BP1	10642	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	47121377	47121377	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tgtttatccccgcccaggcaGtgggcgccatcatcggcaag	12	14	1	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	IGF2BP1-226	NM_006546	exon11	c.G1249T	p.V417L	CAGGCAGTGGGCG	.	115	56	116	1	.	0	0	0	0	0	T	47121377	G	T	47121377	3	4	31	1	0	0	0	0	1	0	0	0	7594	1029	36	3	1291	3	IGF2BP1	17	47121377	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	1226749	47121377	34073833	1920	7294										
NGFR	4804	hgsc.bcm.edu	37	chr17	47584004	47584004	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cgcgagtgcacacgctgggcCgacgccgagtgcgagggtga	18	12	0	1	rs116077510		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	NGFR-947	NM_002507	exon3	c.C552T	p.A184A	CTGGGCCGACGCC	.	63	44	3	0	C|0.969;T|0.031	0	0	0	0	0	T	47584004	C	T	47584004	2	4	31	1	0	0	0	0	0	0	0	1	10425	639	23	1		1	NGFR	17	47584004	Silent	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	462627	47584004	33611206	1921	7295										
DLX3	1747	broad.mit.edu;bcgsc.ca	37	chr17	48068892	48068892	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gatgggtgctcagtacacagCcccagggttgggcgggggcc	18	11	1	0	rs148713638	alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DLX3-90	NM_005220	exon3	c.G853T	p.A285S	ACACAGCCCCAGG	.	21	8	27	0	C|1.000;T|0.000	0	0	0	0	0	A	48068892	C	A	48068892	3	1	31	1	0	0	0	0	1	0	0	0	4583	739	26	3	14	3	DLX3	17	48068892	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	484888	48068892	33126318	1922	7296										
ITGA3	3675	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	48154781	48154781	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	aatgagaccatcttttgcgaGctggggaaccccttcaaacg	10	11	2	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ITGA3-229	NM_005501	exon16	c.G2109T	p.E703D	TTGCGAGCTGGGG	.	135	25	136	0	.	0	0	0	0	0	T	48154781	G	T	48154781	3	4	31	1	0	0	0	0	1	0	0	0	7898	962	34	3	2171	3	ITGA3	17	48154781	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	85889	48154781	33040429	1923	7297										
SGCA	6442	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	48246526	48246526	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tggcatcccccgatagccacGcccgctgtgcccagggccag	12	18	0	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SGCA-92	NM_000023	exon6	c.G658T	p.A220S	AGCCACGCCCGCT	.	59	28	72	0	.	0	0	0	0	0	T	48246526	G	T	48246526	3	4	31	1	0	0	0	0	1	0	0	0	14234	1087	38	2	680	2	SGCA	17	48246526	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	91745	48246526	32948684	1924	7298										
CACNA1G	8913	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	48677192	48677192	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tgatgaccccccactggatgGggatgacgccgatgacgagg	15	11	0	4	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CACNA1G-67	NM_001256360	exon17	c.G3662A	p.G1221E	TGGATGGGGATGA	.	91	38	61	0	.	0	0	0	0	0	A	48677192	G	A	48677192	3	1	31	1	0	0	0	0	1	0	0	0	2550	1232	43	3	3728	3	CACNA1G	17	48677192	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	430666	48677192	32518018	1925	7299										
CACNA1G	8913	bcgsc.ca	37	chr17	48703752	48703752	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cagagctgccagcgccggccTacgtcctggctggatgagca	14	14	0	2	rs739925	byfrequency	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CACNA1G-67	NM_018896	exon38	c.T6774C	p.P2258P	CCGGCCTACGTCC	.	119	6	147	1	T|0.144;G|0.286	0	0	0	0	0	C	48703752	T	C	48703752	2	2	31	1	0	0	0	0	0	0	0	1	2550	1509	53	4		4	CACNA1G	17	48703752	Silent	SNP	T	TCGA-OR-A5KB-01A-11D-A30A-10	26560	48703752	32491458	1926	7300										
KIF2B	84643	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	51900753	51900753	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gaaatgggttgcgatgatccCccagaaaaaccaaacagcct	9	11	0	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	KIF2B-98	NM_032559	exon1	c.C359G	p.P120R	TGATCCCCCAGAA	.	64	36	75	0	.	0	0	0	0	0	G	51900753	C	G	51900753	3	3	31	1	0	0	0	0	1	0	0	0	8319	623	22	3	361	3	KIF2B	17	51900753	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	3197001	51900753	29294457	1927	7301										
KIF2B	84643	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr17	51900846	51900846	+	Frame_Shift_Del	DEL	G	G	-													0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gaaaaagtctccctgcctctGggaaatccagaaactgcagg					novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	KIF2B-98	NM_032559	exon1	c.452delG	p.W151fs	GCCTCTGGGAAAT	.	75	29	71	0	.	0	0	0	0	0	-	51900846	G	-	51900846	7	5	31	1	0	1	0	1	0	0	0	0	8319	1357	47	0	454	0	KIF2B	17	51900846	Frame_Shift_Del	DEL	G	TCGA-OR-A5KB-01A-11D-A30A-10	93	51900846	29294364	1928	7302										
TOM1L1	10040	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	53014522	53014522	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tctcctcgacctaagtcccaGtccccggatgcctagggcca	9	17	1	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TOM1L1-91	NM_005486	exon10	c.G968T	p.S323I	GTCCCAGTCCCCG	.	32	14	39	0	.	0	0	0	0	0	T	53014522	G	T	53014522	3	4	31	1	0	0	0	0	1	0	0	0	16389	1029	36	3	1006	3	TOM1L1	17	53014522	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	1113676	53014522	28180688	1929	7303										
NOG	9241	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr17	54671840	54671840	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tggccacctcgccccccgagGaccggcccggcgggggcggg	18	18	0	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	NOG-90	NM_005450	exon1	c.G256T	p.D86Y	CCCGAGGACCGGC	.	68	17	17	0	.	0	0	0	0	0	T	54671840	G	T	54671840	3	4	31	1	0	0	0	0	1	0	0	0	10548	1174	41	3	258	3	NOG	17	54671840	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	1657318	54671840	26523370	1930	7304										
LPO	4025	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	56326518	56326518	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tgcagcccttaccgcaccatTacgggagactgcaataacag	9	13	0	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	LPO-91	NM_006151	exon5	c.T423C	p.I141I	CACCATTACGGGA	.	69	18	68	0	.	0	0	0	0	0	C	56326518	T	C	56326518	2	2	31	1	0	0	0	0	0	0	0	1	8949	1742	61	4		4	LPO	17	56326518	Silent	SNP	T	TCGA-OR-A5KB-01A-11D-A30A-10	1654678	56326518	24868692	1931	7305										
MTMR4	9110	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	56570286	56570286	+	Missense_Mutation	SNP	C	C	A													0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	agagccaaaatcctcagtatCactgccatctgactccttca					novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MTMR4-91	NM_004687	exon17	c.G3238T	p.D1080Y	CAGTATCACTGCC	.	213	33	262	0	.	0	0	0	0	0	A	56570286	C	A	56570286	3	1	31	1	0	0	0	0	1	0	0	0	9974	826	29	3	361	3	MTMR4	17	56570286	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	243768	56570286	24624924	1932	7306	76	2								
MTMR4	9110	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	56570288	56570288	+	Missense_Mutation	SNP	C	C	A													0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	agccaaaatcctcagtatcaCtgccatctgactccttcaaa					novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MTMR4-91	NM_004687	exon17	c.G3236T	p.S1079I	GTATCACTGCCAT	.	209	33	263	0	.	0	0	0	0	0	A	56570288	C	A	56570288	3	1	31	1	0	0	0	0	1	0	0	0	9974	565	20	3	363	3	MTMR4	17	56570288	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	2	56570288	24624922	1933	7307	76	2								
SEPT4	5414	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	56598641	56598641	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cgatgccccaggggtagagtCgaccccgaactcgccgccct	12	17	0	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SEPT4-68	NM_001256782	exon10	c.G1133C	p.R378P	TAGAGTCGACCCC	.	138	33	160	0	.	0	0	0	0	0	G	56598641	C	G	56598641	3	3	31	1	0	0	0	0	1	0	0	0	14101	884	31	2	364	2	SEPT4	17	56598641	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	28353	56598641	24596569	1934	7308										
TEX14	56155	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	56676889	56676889	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ctgtgctggggctgctggccTcttctgccataaatggagca	13	11	2	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TEX14-810	NM_001201457	exon14	c.A1835T	p.E612V	CTGGCCTCTTCTG	.	105	51	69	0	.	0	0	0	0	0	A	56676889	T	A	56676889	3	1	31	1	0	0	0	0	1	0	0	0	15815	1551	54	5	2738	5	TEX14	17	56676889	Missense_Mutation	SNP	T	TCGA-OR-A5KB-01A-11D-A30A-10	78248	56676889	24518321	1935	7309										
HEATR6	63897	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	58137396	58137396	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cactggtatcttcagcaacaGaaagaaactgctttgagcct	8	10	2	3	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	HEATR6-227	NM_022070	exon10	c.C1478G	p.S493C	GCAACAGAAAGAA	.	95	15	99	0	.	0	0	0	0	0	C	58137396	G	C	58137396	3	2	31	1	0	0	0	0	1	0	0	0	7054	942	33	3	2111	3	HEATR6	17	58137396	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	1460507	58137396	23057814	1936	7310										
NACA2	342538	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	59668146	59668146	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gctgctagttgtgcttgctgAgataaatcttggatcttggc	12	7	2	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	NACA2-91	NM_199290	exon1	c.T396A	p.S132S	TTGCTGAGATAAA	.	120	75	116	0	.	0	0	0	0	0	T	59668146	A	T	59668146	2	4	31	1	0	0	0	0	0	0	0	1	10162	291	11	5		5	NACA2	17	59668146	Silent	SNP	A	TCGA-OR-A5KB-01A-11D-A30A-10	1530750	59668146	21527064	1937	7311										
EFCAB3	146779	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	60484029	60484029	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	atttaaatttcttgaagagcTcaagagtaagagccatttgt	8	5	2	4	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	EFCAB3-227	NM_001144933	exon9	c.T833A	p.L278H	AAGAGCTCAAGAG	.	64	24	69	0	.	0	0	0	0	0	A	60484029	T	A	60484029	3	1	31	1	0	0	0	0	1	0	0	0	4946	1551	54	5	867	5	EFCAB3	17	60484029	Missense_Mutation	SNP	T	TCGA-OR-A5KB-01A-11D-A30A-10	815883	60484029	20711181	1938	7312										
FTSJ3	117246	bcgsc.ca	37	chr17	61903965	61903965	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cacaggtccagcaaggctcgGgctttctgcaggaactgaaa	12	11	1	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FTSJ3-91	NM_017647	exon3	c.C135A	p.A45A	GGCTCGGGCTTTC	.	55	4	58	1	.	0	0	0	0	0	T	61903965	G	T	61903965	2	4	31	1	0	0	0	0	0	0	0	1	6108	1219	43	3		3	FTSJ3	17	61903965	Silent	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	1419936	61903965	19291245	1939	7313										
GH2	2689	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	61958131	61958131	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gatccctggtgccaccctcaCccacatcagcgtttggatgc	9	16	2	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GH2-93	NM_022557	exon4	c.G457T	p.V153L	CCCTCACCCACAT	.	163	32	180	0	.	0	0	0	0	0	A	61958131	C	A	61958131	3	1	31	1	0	0	0	0	1	0	0	0	6388	521	18	3	541	3	GH2	17	61958131	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	54166	61958131	19237079	1940	7314										
ABCA6	23460	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	67094069	67094069	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gctttttcttaccttgtaatCactgatgctgcccatggtga	8	10	2	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ABCA6-159	NM_080284	exon23	c.G3112T	p.D1038Y	TGTAATCACTGAT	.	17	7	26	0	.	0	0	0	0	0	A	67094069	C	A	67094069	3	1	31	1	0	0	0	0	1	0	0	0	36	826	29	3	1809	3	ABCA6	17	67094069	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	5135938	67094069	14101141	1941	7315										
ABCA5	23461	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	67285343	67285344	+	Missense_Mutation	DNP	CC	CC	AG													0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ggttcccaagaacagcaattCctaatgacagctttcttttt					novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	CC	CC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ABCA5-93	NM_018672	exon13	c.G1876C	p.G626L	CAATTCCTAATGA	.	33	0	29	0	.	0	0	0	0	0	AG	67285344	CC	AG	67285343	3	1	31	1	0	0	0	0	1	0	0	0	35	855	30	3	3155	3	ABCA5	17	67285343	Missense_Mutation	DNP	CC	TCGA-OR-A5KB-01A-11D-A30A-10	191274	67285343	13909867	1942	7316										
KCNJ2	3759	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	68171793	68171793	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	atgccgtgattgccatgagaGacggcaagctgtgtttgatg	14	7	0	4	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	KCNJ2-90	NM_000891	exon2	c.G613T	p.D205Y	ATGAGAGACGGCA	.	189	95	176	1	.	0	0	0	0	0	T	68171793	G	T	68171793	3	4	31	1	0	0	0	0	1	0	0	0	8072	942	33	3	615	3	KCNJ2	17	68171793	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	886450	68171793	13023417	1943	7317										
SDK2	54549	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	71334923	71334923	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ggtggtgtggtctggctcacCcgagtcgctctccgtgtagc	15	12	3	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SDK2-24	NM_001144952	exon45	c.G6322T	p.G2108C	GCTCACCCGAGTC	.	174	41	187	0	.	0	0	0	0	0	A	71334923	C	A	71334923	3	1	31	1	0	0	0	0	1	0	0	0	14004	623	22	3	200	3	SDK2	17	71334923	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	3163130	71334923	9860287	1944	7318										
GPR142	350383	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	72368353	72368353	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tgttcctggtcaccaactcgGccatcatccaccggctacgg	9	16	2	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GPR142-93	NM_181790	exon4	c.G1003T	p.A335S	AACTCGGCCATCA	.	205	82	170	2	.	0	0	0	0	0	T	72368353	G	T	72368353	3	4	31	1	0	0	0	0	1	0	0	0	6670	1203	42	3	1017	3	GPR142	17	72368353	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	1033430	72368353	8826857	1945	7319										
CD300LB	124599	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	72522169	72522169	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gcattgaaccgtcagggaccCctgctctggggctctcacag	12	14	3	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CD300LB-91	NM_174892	exon2	c.G199T	p.G67W	GGGACCCCTGCTC	.	81	43	55	0	.	0	0	0	0	0	A	72522169	C	A	72522169	3	1	31	1	0	0	0	0	1	0	0	0	3005	623	22	3	529	3	CD300LB	17	72522169	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	153816	72522169	8673041	1946	7320										
CD300E	342510	ucsc.edu;bcgsc.ca	37	chr17	72613500	72613500	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gtcgtactgtcctcggcaccAgtacttgttatatcccttgt	8	12	0	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CD300E-156	NM_181449	exon2	c.T145C	p.W49R	GGCACCAGTACTT	.	123	56	143	2	.	0	0	0	0	0	G	72613500	A	G	72613500	3	3	31	1	0	0	0	0	1	0	0	0	3004	188	7	4	484	4	CD300E	17	72613500	Missense_Mutation	SNP	A	TCGA-OR-A5KB-01A-11D-A30A-10	91331	72613500	8581710	1947	7321										
RAB37	326624	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	72725483	72725483	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	catccccggctccttctcggCcactgtgggcatcggattca	10	16	2	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	RAB37-230	NM_175738	exon2	c.C161T	p.A54V	TCTCGGCCACTGT	.	183	35	175	0	.	0	0	0	0	0	T	72725483	C	T	72725483	3	4	31	1	0	0	0	0	1	0	0	0	12962	739	26	3	167	3	RAB37	17	72725483	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	111983	72725483	8469727	1948	7322										
FADS6	283985	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	72875688	72875688	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tccgacggggcttgttgtccCgggagaacatgggcagtccg	16	11	0	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FADS6-22	NM_178128	exon5	c.G752T	p.R251L	TTGTCCCGGGAGA	.	178	46	183	1	.	0	0	0	0	0	A	72875688	C	A	72875688	3	1	31	1	0	0	0	0	1	0	0	0	5384	652	23	2	308	2	FADS6	17	72875688	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	150205	72875688	8319522	1949	7323										
OTOP2	92736	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	72926856	72926856	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tggccctgctgatgggtgccGccctgggtcagtacgccatc	14	14	1	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OTOP2-134	NM_178160	exon6	c.G1126C	p.A376P	GGTGCCGCCCTGG	.	179	42	186	0	.	0	0	0	0	0	C	72926856	G	C	72926856	3	2	31	1	0	0	0	0	1	0	0	0	11335	1087	38	2	1144	2	OTOP2	17	72926856	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	51168	72926856	8268354	1950	7324										
SLC16A5	9121	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	73096274	73096274	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ctgggctggaggggtaccttCcttgtcttcggcgggatctt	15	10	2	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SLC16A5-90	NM_001271765	exon5	c.C516T	p.F172F	TACCTTCCTTGTC	.	139	61	129	0	.	0	0	0	0	0	T	73096274	C	T	73096274	2	4	31	1	0	0	0	0	0	0	0	1	14446	854	30	3		3	SLC16A5	17	73096274	Silent	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	169418	73096274	8098936	1951	7325										
TRIM47	91107	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	73871533	73871533	+	Silent	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tccaagaggttcgtactctcGaggtcttggggctcagcatc	12	11	3	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TRIM47-659	NM_033452	exon5	c.C1224G	p.L408L	ACTCTCGAGGTCT	.	95	34	114	0	.	0	0	0	0	0	C	73871533	G	C	73871533	2	2	31	1	0	0	0	0	0	0	0	1	16560	1045	37	2		2	TRIM47	17	73871533	Silent	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	775259	73871533	7323677	1952	7326										
UBE2O	63893	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	74392628	74392628	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tgccagccttctccatcagcCcggccatgggggcagccatg	12	16	2	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	UBE2O-272	NM_022066	exon14	c.G2390T	p.G797V	ATCAGCCCGGCCA	.	46	15	48	0	.	0	0	0	0	0	A	74392628	C	A	74392628	3	1	31	1	0	0	0	0	1	0	0	0	16906	623	22	3	1508	3	UBE2O	17	74392628	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	521095	74392628	6802582	1953	7327										
CBX4	8535	broad.mit.edu	37	chr17	77807925	77807925	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ggtgggtgccgctgccgccgCcaccgccaccgccgccgacg	15	20	0	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CBX4-228	NM_003655	exon5	c.G1516T	p.A506S	CCGCCGCCACCGC	.	86	51	20	1	.	0	0	0	0	0	A	77807925	C	A	77807925	3	1	31	1	0	0	0	0	1	0	0	0	2726	739	26	3	170	3	CBX4	17	77807925	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	3415297	77807925	3387285	1954	7328										
GAA	2548	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	78091491	78091491	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gggcagtgggtgacgctgccGgcccccctggacaccatcaa	14	15	1	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GAA-91	NM_001079803	exon18	c.G2424T	p.P808P	GCTGCCGGCCCCC	.	172	40	125	1	.	0	0	0	0	0	T	78091491	G	T	78091491	2	4	31	1	0	0	0	0	0	0	0	1	6166	1103	39	2		2	GAA	17	78091491	Silent	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	283566	78091491	3103719	1955	7329										
BAHCC1	57597	broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr17	79428055	79428055	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ccgggggtgctgcagaacctCttccagctcaacggcagcag	13	14	2	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	BAHCC1-23	.	.	.	.	GAACCTCTTCCAG	.	130	34	28	0	.	0	0	0	0	0	T	79428055	C	T	79428055	2	4	31	1	0	0	0	0	0	0	0	1	1297	900	32	3		3	BAHCC1	17	79428055	Silent	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	1336564	79428055	1767155	1956	7330										
HEXDC	284004	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	80393626	80393626	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	acagcaagagcagaacagcaCggggaagttgtgcctgtcac	13	10	1	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	HEXDC-92	NM_173620	exon6	c.C509T	p.T170M	ACAGCACGGGGAA	.	172	68	69	1	.	0	0	0	0	0	T	80393626	C	T	80393626	3	4	31	1	0	0	0	0	1	0	0	0	7096	536	19	1	527	1	HEXDC	17	80393626	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	965571	80393626	801584	1957	7331										
COLEC12	81035	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr18	321761	321761	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cccagcacagtcttctcctgGcccatggccatgaccccagt	8	18	2	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	COLEC12-92	NM_130386	exon9	c.C2110A	p.P704T	CTCCTGGCCCATG	.	57	30	60	0	.	0	0	0	0	0	T	321761	G	T	321761	3	4	31	1	0	0	0	0	1	0	0	0	3718	1203	42	3	126	3	COLEC12	18	321761	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10		321761	77755487	1958	7332										
CLUL1	27098	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr18	627305	627305	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gatgcagcaagagtttgaccAgacttttcaatcacatttca	7	9	3	3	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CLUL1-92	NM_199167	exon5	c.A632G	p.Q211R	TTGACCAGACTTT	.	128	57	147	1	.	0	0	0	0	0	G	627305	A	G	627305	3	3	31	1	0	0	0	0	1	0	0	0	3576	188	7	4	646	4	CLUL1	18	627305	Missense_Mutation	SNP	A	TCGA-OR-A5KB-01A-11D-A30A-10	305544	627305	77449943	1959	7333										
MYOM1	8736	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr18	3067394	3067394	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cacaaccagcccgtatttgcCcgagtcagcggtgctcacgc	10	16	2	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MYOM1-94	NM_003803	exon38	c.G4924T	p.G1642C	ATTTGCCCGAGTC	.	166	39	126	0	.	0	0	0	0	0	A	3067394	C	A	3067394	3	1	31	1	0	0	0	0	1	0	0	0	10119	623	22	3	137	3	MYOM1	18	3067394	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	2440089	3067394	75009854	1960	7334										
LAMA1	284217	broad.mit.edu;bcgsc.ca	37	chr18	6986199	6986199	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ttgctttcctgcatctttgcCtcagcttccctcacgagcgc	7	16	3	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	LAMA1-149	NM_005559	exon37	c.G5316C	p.E1772D	CTTTGCCTCAGCT	.	90	31	87	2	.	0	0	0	0	0	G	6986199	C	G	6986199	3	3	31	1	0	0	0	0	1	0	0	0	8627	680	24	3	4019	3	LAMA1	18	6986199	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	3918805	6986199	71091049	1961	7335										
ANKRD12	23253	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr18	9258888	9258888	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	taacatttaacggatcatatCtcctggatggaaacccctta	6	10	2	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ANKRD12-92	NM_015208	exon9	c.C5623G	p.L1875V	TCATATCTCCTGG	.	164	45	177	0	.	0	0	0	0	0	G	9258888	C	G	9258888	3	3	31	1	0	0	0	0	1	0	0	0	640	913	32	3	5653	3	ANKRD12	18	9258888	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	2272689	9258888	68818360	1962	7336										
TXNDC2	84203	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr18	9886692	9886692	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ctccccatggtcagccacacGttccacatgcgcacagagga	9	16	1	1	rs114777727	byfrequency;alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TXNDC2-92	NM_001098529	exon2	c.G216T	p.T72T	CCACACGTTCCAC	.	98	46	109	0	G|0.996;A|0.004	0	0	0	0	0	T	9886692	G	T	9886692	2	4	31	1	0	0	0	0	0	0	0	1	16835	1132	40	2		2	TXNDC2	18	9886692	Silent	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	627804	9886692	68190556	1963	7337										
CIDEA	1149	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr18	12277152	12277152	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cggttcctgtcctactccgcCcaggtgacgggacagtttct	11	14	1	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CIDEA-91	NM_001279	exon5	c.C543A	p.A181A	CTCCGCCCAGGTG	.	132	63	140	0	.	0	0	0	0	0	A	12277152	C	A	12277152	2	1	31	1	0	0	0	0	0	0	0	1	3431	610	22	3		3	CIDEA	18	12277152	Silent	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	2390460	12277152	65800096	1964	7338										
PTPN2	5771	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr18	12817252	12817252	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	catggtcagggttcaaggagCcagattctctcactttaaac	9	10	4	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PTPN2-652	NM_001207013	exon7	c.G677T	p.G226V	AAGGAGCCAGATT	.	203	93	204	0	.	0	0	0	0	0	A	12817252	C	A	12817252	3	1	31	1	0	0	0	0	1	0	0	0	12818	739	26	3	681	3	PTPN2	18	12817252	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	540100	12817252	65259996	1965	7339										
POTEC	388468	broad.mit.edu;bcgsc.ca	37	chr18	14533178	14533178	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	acttgctgatccacaacataCagcaagtatgagggcagttc	9	10	0	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	POTEC-3	NM_001137671	exon5	c.G937A	p.V313I	AACATACAGCAAG	.	530	194	649	2	.	0	0	0	0	0	T	14533178	C	T	14533178	3	4	31	1	0	0	0	0	1	0	0	0	12291	478	17	3	719	3	POTEC	18	14533178	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	1715926	14533178	63544070	1966	7340										
ANKRD30B	374860	broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr18	14748439	14748439	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	atgaagaggctcttagctgcCgctggcaagggcgtgcgggg	18	9	1	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ANKRD30B-24	NM_001145029	exon1	c.C21A	p.A7A	AGCTGCCGCTGGC	.	94	27	59	1	.	0	0	0	0	0	A	14748439	C	A	14748439	2	1	31	1	0	0	0	0	0	0	0	1	659	639	23	2		2	ANKRD30B	18	14748439	Silent	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	215261	14748439	63328809	1967	7341										
ANKRD30B	374860	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr18	14787090	14787090	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gacgatgaagaaaattcttgGgattctgaggtactatgtgt	12	4	2	3	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ANKRD30B-24	NM_001145029	exon15	c.G1725T	p.W575C	TTCTTGGGATTCT	.	132	52	154	0	.	0	0	0	0	0	T	14787090	G	T	14787090	3	4	31	1	0	0	0	0	1	0	0	0	659	1241	43	3	1783	3	ANKRD30B	18	14787090	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	38651	14787090	63290158	1968	7342										
ANKRD30B	374860	broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr18	14851981	14851981	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	aatacaatatataacaatgaGgtgctccatcaaccacttta	4	9	1	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ANKRD30B-24	NM_001145029	exon36	c.G3681A	p.E1227E	CAATGAGGTGCTC	.	173	40	234	0	.	0	0	0	0	0	A	14851981	G	A	14851981	2	1	31	1	0	0	0	0	0	0	0	1	659	991	35	3		3	ANKRD30B	18	14851981	Silent	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	64891	14851981	63225267	1969	7343										
TTC39C	125488	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr18	21646036	21646036	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	catgtgatgacttaaaaaccAcagaaaaactgtgtgaaagt	8	6	0	4	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TTC39C-91	NM_001135993	exon3	c.A277G	p.T93A	AAAACCACAGAAA	.	151	73	183	0	.	0	0	0	0	0	G	21646036	A	G	21646036	3	3	31	1	0	0	0	0	1	0	0	0	16747	159	6	4	287	4	TTC39C	18	21646036	Missense_Mutation	SNP	A	TCGA-OR-A5KB-01A-11D-A30A-10	6794055	21646036	56431212	1970	7344										
SS18	6760	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr18	23615884	23615884	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gctgataaccgtaatcattaTgacctacatcaattcgacaa	5	10	2	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SS18-1968	NM_001007559	exon8	c.A884G	p.H295R	TCATTATGACCTA	.	51	20	69	0	.	0	0	0	0	0	C	23615884	T	C	23615884	3	2	31	1	0	0	0	0	1	0	0	0	15212	1464	51	4	388	4	SS18	18	23615884	Missense_Mutation	SNP	T	TCGA-OR-A5KB-01A-11D-A30A-10	1969848	23615884	54461364	1971	7345										
CDH2	1000	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr18	25565561	25565561	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	aggaagatcaaaagcaaatgGtccagcatttggatcaatgt	10	6	2	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CDH2-525	NM_001792	exon12	c.C1906A	p.P636T	CAAATGGTCCAGC	.	87	17	96	0	.	0	0	0	0	0	T	25565561	G	T	25565561	3	4	31	1	0	0	0	0	1	0	0	0	3111	1261	44	3	834	3	CDH2	18	25565561	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	1949677	25565561	52511687	1972	7346										
CDH2	1000	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr18	25593747	25593747	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gggcatatatcaggaacttgGcatgctcagaagagagtgga	14	6	2	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CDH2-525	NM_001792	exon3	c.C299A	p.A100D	AACTTGGCATGCT	.	75	19	77	0	.	0	0	0	0	0	T	25593747	G	T	25593747	3	4	31	1	0	0	0	0	1	0	0	0	3111	1203	42	3	2477	3	CDH2	18	25593747	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	28186	25593747	52483501	1973	7347										
DSG1	1828	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr18	28906904	28906904	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ccgaaggcagaaacgtgaatGgatcaagttcgcagcagcct	12	10	1	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DSG1-519	NM_001942	exon3	c.G152T	p.W51L	GTGAATGGATCAA	.	355	155	461	1	.	0	0	0	0	0	T	28906904	G	T	28906904	3	4	31	1	0	0	0	0	1	0	0	0	4787	1357	47	3	162	3	DSG1	18	28906904	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	3313157	28906904	49170344	1974	7348										
DSG3	1830	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr18	29049291	29049291	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ccgccatcggcctgctgctcCttggtctcctgctgctgctg	11	17	1	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DSG3-98	NM_001944	exon12	c.C1876T	p.L626F	CTGCTCCTTGGTC	.	88	35	70	0	.	0	0	0	0	0	T	29049291	C	T	29049291	3	4	31	1	0	0	0	0	1	0	0	0	4789	681	24	3	1922	3	DSG3	18	29049291	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	142387	29049291	49027957	1975	7349										
KLHL14	57565	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr18	30350407	30350407	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ctgcgagcaggaggccagcaCggccttgtggcaatggaact	15	11	0	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	KLHL14-91	NM_020805	exon2	c.G148A	p.V50M	CCAGCACGGCCTT	.	100	31	78	1	.	0	0	0	0	0	T	30350407	C	T	30350407	3	4	31	1	0	0	0	0	1	0	0	0	8391	536	19	1	1770	1	KLHL14	18	30350407	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	1301116	30350407	47726841	1976	7350										
ASXL3	80816	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr18	31323338	31323338	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gcaacaagtctgcccacctcCgggagaccaccactgtacta	8	16	1	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ASXL3-49	NM_030632	exon12	c.C3526A	p.R1176R	CACCTCCGGGAGA	.	42	24	58	0	.	0	0	0	0	0	A	31323338	C	A	31323338	2	1	31	1	0	0	0	0	0	0	0	1	1069	643	23	2		2	ASXL3	18	31323338	Silent	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	972931	31323338	46753910	1977	7351										
ASXL3	80816	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr18	31325189	31325189	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cagtgggtaaaacagcaccaGagagaaacgttgaaattccg	11	8	0	3	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ASXL3-49	NM_030632	exon12	c.G5377C	p.E1793Q	GCACCAGAGAGAA	.	65	11	93	0	.	0	0	0	0	0	C	31325189	G	C	31325189	3	2	31	1	0	0	0	0	1	0	0	0	1069	943	33	3	5423	3	ASXL3	18	31325189	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	1851	31325189	46752059	1978	7352										
DTNA	1837	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr18	32431876	32431876	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	aaaggcagctgattgctgagCtagaaaacaagaacaggtga	12	6	0	5	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DTNA-153	NM_001390	exon14	c.C1435A	p.L479I	GCTGAGCTAGAAA	.	204	93	195	0	.	0	0	0	0	0	A	32431876	C	A	32431876	3	1	31	1	0	0	0	0	1	0	0	0	4799	796	28	3	1524	3	DTNA	18	32431876	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	1106687	32431876	45645372	1979	7353										
FHOD3	80206	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr18	34297943	34297943	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ggggatggggaggctgggagGacccagcaggaggcagaggc	23	7	0	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FHOD3-139	NM_025135	exon16	c.G2157T	p.R719S	TGGGAGGACCCAG	.	161	28	160	1	.	0	0	0	0	0	T	34297943	G	T	34297943	3	4	31	1	0	0	0	0	1	0	0	0	5902	1165	41	3	2219	3	FHOD3	18	34297943	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	1866067	34297943	43779305	1980	7354										
KIAA1328	57536	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr18	34646889	34646889	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gcactctccagtgttcatctGtggaactggatggttcctac	10	11	3	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	KIAA1328-90	NM_020776	exon7	c.G613C	p.V205L	TCATCTGTGGAAC	.	202	43	181	0	.	0	0	0	0	0	C	34646889	G	C	34646889	3	2	31	1	0	0	0	0	1	0	0	0	8246	1377	48	3	639	3	KIAA1328	18	34646889	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	348946	34646889	43430359	1981	7355										
CELF4	56853	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr18	34853088	34853088	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gggttcaggtagccgccctgCgcgactgatgccatcagggc	15	13	2	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CELF4-92	NM_020180	exon7	c.G840C	p.A280A	GCCCTGCGCGACT	.	314	147	249	0	.	0	0	0	0	0	G	34853088	C	G	34853088	2	3	31	1	0	0	0	0	0	0	0	1	3224	755	27	2		2	CELF4	18	34853088	Silent	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	206199	34853088	43224160	1982	7356										
PIK3C3	5289	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr18	39567811	39567811	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cgacaaggacacatggtgaaAgtagattggctggatagatt	13	5	0	3	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PIK3C3-1312	NM_002647	exon5	c.A567G	p.K189K	GGTGAAAGTAGAT	.	133	73	162	0	.	0	0	0	0	0	G	39567811	A	G	39567811	2	3	31	1	0	0	0	0	0	0	0	1	11941	69	3	4		4	PIK3C3	18	39567811	Silent	SNP	A	TCGA-OR-A5KB-01A-11D-A30A-10	4714723	39567811	38509437	1983	7357										
SLC14A2	8170	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr18	43207111	43207111	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ctctcgccttgggccaagacAggtgggtccctctctatagg	12	13	2	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SLC14A2-93	NM_001242692	exon5	c.A520T	p.R174W	CAAGACAGGTGGG	.	120	22	86	0	.	0	0	0	0	0	T	43207111	A	T	43207111	3	4	31	1	0	0	0	0	1	0	0	0	14432	202	7	5	530	5	SLC14A2	18	43207111	Missense_Mutation	SNP	A	TCGA-OR-A5KB-01A-11D-A30A-10	3639300	43207111	34870137	1984	7358										
SLC14A2	8170	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr18	43219733	43219733	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gttacaagccatccctgttgGggtcggccaggtgtatggct	14	10	0	0	rs137884313	alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SLC14A2-93	NM_001242692	exon8	c.G866T	p.G289V	CTGTTGGGGTCGG	.	95	21	94	0	G|1.000;A|0.000	0	0	0	0	0	T	43219733	G	T	43219733	3	4	31	1	0	0	0	0	1	0	0	0	14432	1232	43	3	888	3	SLC14A2	18	43219733	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	12622	43219733	34857515	1985	7359										
SIGLEC15	284266	hgsc.bcm.edu	37	chr18	43417752	43417752	+	Silent	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	aacgacctctcgctgcgcgtCgagcgcctcgccctggctga	12	17	1	1	rs78530686	byfrequency	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SIGLEC15-90	NM_213602	exon3	c.C387G	p.V129V	GCGCGTCGAGCGC	.	5	5	0	0	C|0.786;G|0.214	0	0	0	0	0	G	43417752	C	G	43417752	2	3	31	1	0	0	0	0	0	0	0	1	14345	871	31	2		2	SIGLEC15	18	43417752	Silent	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	198019	43417752	34659496	1986	7360										
TCEB3B	51224	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr18	44561326	44561326	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ccaggccttttcctggtcctGaagagcctccccgaagcgct	10	16	0	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TCEB3B-156	NM_016427	exon1	c.C310T	p.Q104X	GGTCCTGAAGAGC	.	66	36	52	0	.	0	0	0	0	0	A	44561326	G	A	44561326	4	1	31	1	0	0	0	0	0	1	0	0	15719	1299	45	3	1955	3	TCEB3B	18	44561326	Nonsense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	1143574	44561326	33515922	1987	7361										
ME2	4200	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr18	48458690	48458690	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	aaacttacagatgggcgagtCtttacaccaggtcaaggaaa	10	8	2	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ME2-90	NM_001168335	exon13	c.C1377G	p.V459V	GCGAGTCTTTACA	.	151	23	185	0	.	0	0	0	0	0	G	48458690	C	G	48458690	2	3	31	1	0	0	0	0	0	0	0	1	9446	900	32	3		3	ME2	18	48458690	Silent	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	3897364	48458690	29618558	1988	7362										
DCC	1630	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr18	50278479	50278479	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ctctcagaaccttctgatgcCgtcacaatgcggggaggaaa	11	11	3	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DCC-225	NM_005215	exon2	c.C147G	p.A49A	TGATGCCGTCACA	.	57	8	66	0	.	0	0	0	0	0	G	50278479	C	G	50278479	2	3	31	1	0	0	0	0	0	0	0	1	4288	639	23	2		2	DCC	18	50278479	Silent	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	1819789	50278479	27798769	1989	7363										
DCC	1630	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr18	50985607	50985607	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	aactttgttccataggaaacGggccacccacagtgctggca	10	12	0	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DCC-225	NM_005215	exon24	c.G3398C	p.R1133P	GGAAACGGGCCAC	.	62	22	80	0	.	0	0	0	0	0	C	50985607	G	C	50985607	3	2	31	1	0	0	0	0	1	0	0	0	4288	1116	39	2	3492	2	DCC	18	50985607	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	707128	50985607	27091641	1990	7364										
RAX	30062	hgsc.bcm.edu	37	chr18	56936395	56936395	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ggcggcggcggcgcgagaggTtgcaggccggggcccaacgg	22	12	0	1	rs7226481		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	RAX-90	NM_013435	exon3	c.A882G	p.Q294Q	GAGAGGTTGCAGG	.	24	12	0	0	T|0.767;C|0.233	0	0	0	0	0	C	56936395	T	C	56936395	2	2	31	1	0	0	0	0	0	0	0	1	13131	1722	60	4		4	RAX	18	56936395	Silent	SNP	T	TCGA-OR-A5KB-01A-11D-A30A-10	5950788	56936395	21140853	1991	7365										
CDH20	28316	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr18	59221763	59221763	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cccttcgactccctccagacGtatatgttcgagggggacgg	12	13	0	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CDH20-155	NM_031891	exon11	c.G2241T	p.T747T	CCAGACGTATATG	.	115	54	83	0	.	0	0	0	0	0	T	59221763	G	T	59221763	2	4	31	1	0	0	0	0	0	0	0	1	3112	1132	40	2		2	CDH20	18	59221763	Silent	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	2285368	59221763	18855485	1992	7366										
TNFRSF11A	8792	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr18	60036089	60036089	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gtctgtcagggcacatgtgtAggaggtggtccctacgcaca	14	10	2	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TNFRSF11A-659	NM_003839	exon9	c.A939G	p.V313V	ATGTGTAGGAGGT	.	237	63	224	1	.	0	0	0	0	0	G	60036089	A	G	60036089	2	3	31	1	0	0	0	0	0	0	0	1	16321	407	15	4		4	TNFRSF11A	18	60036089	Silent	SNP	A	TCGA-OR-A5KB-01A-11D-A30A-10	814326	60036089	18041159	1993	7367										
SERPINB7	8710	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr18	61460444	61460444	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tttttctgatataaatgcatCccacaaggattatgatctca	5	8	2	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SERPINB7-226	NM_001261830	exon4	c.C269A	p.S90Y	ATGCATCCCACAA	.	89	21	105	0	.	0	0	0	0	0	A	61460444	C	A	61460444	3	1	31	1	0	0	0	0	1	0	0	0	14141	855	30	3	279	3	SERPINB7	18	61460444	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	1424355	61460444	16616804	1994	7368										
SERPINB8	5271	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr18	61654266	61654266	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ggaatgatcgatgcttttgaCgaagccaaggcagacttttc	11	8	0	3	rs146637081	alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SERPINB8-226	NM_198833	exon7	c.C879A	p.D293E	TTTTGACGAAGCC	.	153	66	140	0	C|1.000;G|0.000	0	0	0	0	0	A	61654266	C	A	61654266	3	1	31	1	0	0	0	0	1	0	0	0	14142	535	19	2	914	2	SERPINB8	18	61654266	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	193822	61654266	16422982	1995	7369										
CDH7	1005	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr18	63476945	63476945	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tgaatttttcaccagcttcaCtctgatgttgataaaggaga	8	7	3	4	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CDH7-94	NM_004361	exon3	c.C216G	p.H72Q	GCTTCACTCTGAT	.	94	40	108	0	.	0	0	0	0	0	G	63476945	C	G	63476945	3	3	31	1	0	0	0	0	1	0	0	0	3121	564	20	3	222	3	CDH7	18	63476945	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	1822679	63476945	14600303	1996	7370										
CDH7	1005	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr18	63511216	63511216	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tctcttcacccttgtaccctAtggaggtgtcggaagctacc	9	13	2	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CDH7-94	NM_004361	exon7	c.A1150T	p.M384L	TACCCTATGGAGG	.	119	32	124	0	.	0	0	0	0	0	T	63511216	A	T	63511216	3	4	31	1	0	0	0	0	1	0	0	0	3121	449	16	5	1172	5	CDH7	18	63511216	Missense_Mutation	SNP	A	TCGA-OR-A5KB-01A-11D-A30A-10	34271	63511216	14566032	1997	7371										
CDH19	28513	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr18	64239377	64239377	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ttgtttgagagttttctgttGctccaagacaaggccatagg	11	7	1	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CDH19-516	NM_021153	exon2	c.C65A	p.A22E	TCTGTTGCTCCAA	.	107	16	114	0	.	0	0	0	0	0	T	64239377	G	T	64239377	3	4	31	1	0	0	0	0	1	0	0	0	3110	1319	46	3	2297	3	CDH19	18	64239377	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	728161	64239377	13837871	1998	7372										
DSEL	92126	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr18	65179129	65179129	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tgcggatatctgacaccttcCattcacaagcatctacaaat	5	12	3	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DSEL-157	NM_032160	exon2	c.G2747T	p.W916L	ACCTTCCATTCAC	.	70	30	81	1	.	0	0	0	0	0	A	65179129	C	A	65179129	3	1	31	1	0	0	0	0	1	0	0	0	4786	595	21	3	925	3	DSEL	18	65179129	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	939752	65179129	12898119	1999	7373										
CCDC102B	79839	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr18	66564598	66564598	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gcttttggataagaaaaataGattaagtgcaaactctcaaa	7	5	1	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CCDC102B-93	NM_001093729	exon8	c.G1196T	p.R399I	AAAATAGATTAAG	.	49	8	56	0	.	0	0	0	0	0	T	66564598	G	T	66564598	3	4	31	1	0	0	0	0	1	0	0	0	2743	942	33	3	1214	3	CCDC102B	18	66564598	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	1385469	66564598	11512650	2000	7374										
CCDC102B	79839	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr18	66721282	66721282	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ttcagcttgatgattccctgAatcagatccgtaagctccag	8	11	2	4	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CCDC102B-93	NM_001093729	exon10	c.A1450T	p.N484Y	TCCCTGAATCAGA	.	22	5	16	0	.	0	0	0	0	0	T	66721282	A	T	66721282	3	4	31	1	0	0	0	0	1	0	0	0	2743	246	9	5	1476	5	CCDC102B	18	66721282	Missense_Mutation	SNP	A	TCGA-OR-A5KB-01A-11D-A30A-10	156684	66721282	11355966	2001	7375										
CBLN2	147381	hgsc.bcm.edu	37	chr18	70209321	70209321	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	aggcaggatccgcagccgccCggctcgcgcagcgccccccg	14	20	0	0	rs7237888		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CBLN2-90	NM_182511	exon3	c.G75T	p.P25P	GCCGCCCGGCTCG	.	9	9	0	0	C|0.390;A|0.610	0	0	0	0	0	A	70209321	C	A	70209321	2	1	31	1	0	0	0	0	0	0	0	1	2711	639	23	2		2	CBLN2	18	70209321	Silent	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	3488039	70209321	7867927	2002	7376										
NETO1	81832	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr18	70526196	70526196	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	acagaaacgtccaattattgGagaaaagccaaaaggtccat	8	8	0	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	NETO1-94	NM_001201465	exon4	c.C334A	p.P112T	TTATTGGAGAAAA	.	124	49	143	0	.	0	0	0	0	0	T	70526196	G	T	70526196	3	4	31	1	0	0	0	0	1	0	0	0	10368	1174	41	3	1304	3	NETO1	18	70526196	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	316875	70526196	7551052	2003	7377										
ZNF407	55628	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr18	72775251	72775251	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	agcagcaggaggccagcgccGccccctgagcaggtgcagca	15	15	0	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ZNF407-92	NM_017757	exon8	c.G5574T	p.P1858P	AGCGCCGCCCCCT	.	253	62	203	0	.	0	0	0	0	0	T	72775251	G	T	72775251	2	4	31	1	0	0	0	0	0	0	0	1	17924	1074	38	2		2	ZNF407	18	72775251	Silent	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	2249055	72775251	5301997	2004	7378										
CTDP1	9150	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr18	77475469	77475469	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gggagcgaagatcctcactcGgctggtgctgagccccgacg	15	13	1	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CTDP1-90	NM_004715	exon8	c.G2009T	p.R670L	TCACTCGGCTGGT	.	112	46	70	0	.	0	0	0	0	0	T	77475469	G	T	77475469	3	4	31	1	0	0	0	0	1	0	0	0	4008	1116	39	2	2039	2	CTDP1	18	77475469	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	4700218	77475469	601779	2005	7379										
STK11	6794	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	1220443	1220443	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tgtgcacaaggacatcaagcCggggaacctgctgctcacca	11	13	2	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	STK11-5227	NM_000455	exon4	c.C536G	p.P179R	TCAAGCCGGGGAA	.	183	107	169	1	.	0	0	0	0	0	G	1220443	C	G	1220443	3	3	31	1	0	0	0	0	1	0	0	0	15324	652	23	2	550	2	STK11	19	1220443	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10		1220443	57908540	2006	7380										
OAZ1	4946	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	2271846	2271846	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	acgaggattctcaacgtccaGtccaggctcacagacgccaa	9	14	2	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OAZ1-68	.	.	.	.	CGTCCAGTCCAGG	.	206	132	216	2	.	0	0	0	0	0	T	2271846	G	T	2271846	3	4	31	1	0	0	0	0	1	0	0	0	10833	1020	36	3	368	3	OAZ1	19	2271846	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	1051403	2271846	56857137	2007	7381										
SGTA	6449	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	2757762	2757762	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cccaaggggttgttgccaccCgaaatcatgccggacatgct	11	13	1	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SGTA-91	NM_003021	exon10	c.G756T	p.S252S	GCCACCCGAAATC	.	91	58	62	1	.	0	0	0	0	0	A	2757762	C	A	2757762	2	1	31	1	0	0	0	0	0	0	0	1	14260	639	23	2		2	SGTA	19	2757762	Silent	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	485916	2757762	56371221	2008	7382										
NFIC	4782	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	3449047	3449047	+	Nonsense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tgaagaagacagagatggacAagtcaccattcaacagcccg	10	10	2	4	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	NFIC-226	NM_001245004	exon7	c.A994T	p.K332X	ATGGACAAGTCAC	.	145	88	116	0	.	0	0	0	0	0	T	3449047	A	T	3449047	4	4	31	1	0	0	0	0	0	1	0	0	10401	131	5	5	1027	5	NFIC	19	3449047	Nonsense_Mutation	SNP	A	TCGA-OR-A5KB-01A-11D-A30A-10	691285	3449047	55679936	2009	7383										
PTPRS	5802	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	5239001	5239001	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gcggcgagcgggccgccaggCggaaggcgtactccgtgttg	19	12	0	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PTPRS-357	NM_002850	exon13	c.G1778T	p.R593L	GCCAGGCGGAAGG	.	118	66	43	0	.	0	0	0	0	0	A	5239001	C	A	5239001	3	1	31	1	0	0	0	0	1	0	0	0	12846	768	27	2	4172	2	PTPRS	19	5239001	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	1789954	5239001	53889982	2010	7384										
MLLT1	4298	hgsc.bcm.edu	37	chr19	6214015	6214015	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gctgggcagggaggagtcggCgctgttgtcactctcgctgt	17	10	2	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MLLT1-658	NM_005934	exon9	c.G1342T	p.A448S	AGTCGGCGCTGTT	.	9	7	10	0	.	0	0	0	0	0	A	6214015	C	A	6214015	3	1	31	1	0	0	0	0	1	0	0	0	9653	768	27	2	353	2	MLLT1	19	6214015	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	975014	6214015	52914968	2011	7385										
KHSRP	8570	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	6416662	6416662	+	Splice_Site	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ggctttcacattctcgccacCtgcagaaacgcagaaggtga	10	12	2	3	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	KHSRP-226	NM_003685	exon15	c.1328-1G>T	.	CGCCACCTGCAGA	.	78	43	87	0	.	0	0	0	0	0	A	6416662	C	A	6416662	5	1	31	1	0	0	0	0	0	0	1	0	8172	695	24	3	836	3	KHSRP	19	6416662	Splice_Site	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	202647	6416662	52712321	2012	7386										
VAV1	7409	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr19	6853959	6853959	+	Frame_Shift_Del	DEL	G	G	-													0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ttctgttctctctccacagtGggaagcacaaagtattttgg					novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	VAV1-1276	NM_005428	exon26	c.2334delG	p.V778fs	CACAGTGGGAAGC	.	23	17	26	0	.	0	0	0	0	0	-	6853959	G	-	6853959	7	5	31	1	0	1	0	1	0	0	0	0	17169	1362	47	0	2436	0	VAV1	19	6853959	Frame_Shift_Del	DEL	G	TCGA-OR-A5KB-01A-11D-A30A-10	437297	6853959	52275024	2013	7387										
ZNF358	140467	hgsc.bcm.edu	37	chr19	7585011	7585011	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	agcggccctacccgtgtccgCagtgcggcaaggccttcggg	15	15	0	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ZNF358-90	NM_018083	exon2	c.C883T	p.Q295X	TGTCCGCAGTGCG	.	23	17	0	0	.	0	0	0	0	0	T	7585011	C	T	7585011	4	4	31	1	0	0	0	0	0	1	0	0	17904	711	25	3	885	3	ZNF358	19	7585011	Nonsense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	731052	7585011	51543972	2014	7388										
MUC16	94025	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	9060203	9060203	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gccccaggagaacctgtttgGgtggtaatggtcatttctgt	13	8	2	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MUC16-566	NM_024690	exon3	c.C27243A	p.T9081T	TGTTTGGGTGGTA	.	115	71	196	0	.	0	0	0	0	0	T	9060203	G	T	9060203	2	4	31	1	0	0	0	0	0	0	0	1	10001	1219	43	3		3	MUC16	19	9060203	Silent	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	1475192	9060203	50068780	2015	7389										
MUC16	94025	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	9062539	9062539	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gtctgtggttatcaccaggcCagggttgagaagagaagtca	14	7	3	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MUC16-566	NM_024690	exon3	c.G24907T	p.G8303C	CCAGGCCAGGGTT	.	94	54	145	0	.	0	0	0	0	0	A	9062539	C	A	9062539	3	1	31	1	0	0	0	0	1	0	0	0	10001	594	21	3	18944	3	MUC16	19	9062539	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	2336	9062539	50066444	2016	7390										
MUC16	94025	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	9070334	9070334	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tgcatggcttctgtgtgcgcAgtgtctttgtaagtggtcag	14	7	3	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MUC16-566	NM_024690	exon3	c.T17112A	p.T5704T	GTGCGCAGTGTCT	.	188	104	271	0	.	0	0	0	0	0	T	9070334	A	T	9070334	2	4	31	1	0	0	0	0	0	0	0	1	10001	175	7	5		5	MUC16	19	9070334	Silent	SNP	A	TCGA-OR-A5KB-01A-11D-A30A-10	7795	9070334	50058649	2017	7391										
MUC16	94025	bcgsc.ca	37	chr19	9090531	9090531	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gtattcaaagttccttctgtTtcctttccactcgtggagtg	8	10	2	0	rs12976721	byfrequency	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MUC16-566	NM_024690	exon1	c.A1284G	p.E428E	TTCTGTTTCCTTT	.	103	5	148	1	T|0.772;C|0.228	0	0	0	0	0	C	9090531	T	C	9090531	2	2	31	1	0	0	0	0	0	0	0	1	10001	1838	64	4		4	MUC16	19	9090531	Silent	SNP	T	TCGA-OR-A5KB-01A-11D-A30A-10	20197	9090531	50038452	2018	7392										
COL5A3	50509	broad.mit.edu;mdanderson.org	37	chr19	10097029	10097029	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tgggggcccctcctcgccagCctgccccgcctgccccttcg	11	22	0	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	COL5A3-99	NM_015719	exon30	c.G2314T	p.A772S	CGCCAGCCTGCCC	.	29	20	19	0	.	0	0	0	0	0	A	10097029	C	A	10097029	3	1	31	1	0	0	0	0	1	0	0	0	3704	739	26	3	3075	3	COL5A3	19	10097029	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	1006498	10097029	49031954	2019	7393										
COL5A3	50509	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	10106750	10106750	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cacaagtctcacctgtggccCttctgctccctcctctcctt	5	19	3	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	COL5A3-99	NM_015719	exon15	c.G1525T	p.G509W	GTGGCCCTTCTGC	.	149	85	161	0	.	0	0	0	0	0	A	10106750	C	A	10106750	3	1	31	1	0	0	0	0	1	0	0	0	3704	681	24	3	3924	3	COL5A3	19	10106750	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	9721	10106750	49022233	2020	7394										
TYK2	7297	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	10476223	10476223	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ttcacctcctcctctactggCcaccactggatgccaccagt	6	18	2	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TYK2-1009	NM_003331	exon7	c.G981A	p.W327X	TACTGGCCACCAC	.	78	32	62	1	.	0	0	0	0	0	T	10476223	C	T	10476223	4	4	31	1	0	0	0	0	0	1	0	0	16848	740	26	3	2658	3	TYK2	19	10476223	Nonsense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	369473	10476223	48652760	2021	7395										
SMARCA4	6597	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	11150201	11150201	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tgggctacaattccagcgtgGccttcagttctgcacacgtg	11	12	2	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SMARCA4-1523	NM_001128849	exon30	c.G4238A	p.G1413D	AGCGTGGCCTTCA	.	65	39	74	0	.	0	0	0	0	0	A	11150201	G	A	11150201	3	1	31	1	0	0	0	0	1	0	0	0	14805	1203	42	3	4352	3	SMARCA4	19	11150201	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	673978	11150201	47978782	2022	7396										
CACNA1A	773	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	13565966	13565966	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tcatcatcaggcagatgctgCtccagtgcgaggacgatgca	12	11	3	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CACNA1A-67	NM_001127222	exon2	c.G354T	p.E118D	ATGCTGCTCCAGT	.	96	55	127	0	.	0	0	0	0	0	A	13565966	C	A	13565966	3	1	31	1	0	0	0	0	1	0	0	0	2544	796	28	3	7464	3	CACNA1A	19	13565966	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	2415765	13565966	45563017	2023	7397										
SLC1A6	6511	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	15083539	15083539	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	aatgaccacggcgctgaccgTcagcagaatgaaggcgtttc	12	11	1	4	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SLC1A6-186	NM_001272087	exon4	c.A184T	p.T62S	TGACCGTCAGCAG	.	321	145	227	1	.	0	0	0	0	0	A	15083539	T	A	15083539	3	1	31	1	0	0	0	0	1	0	0	0	14471	1667	58	5	1546	5	SLC1A6	19	15083539	Missense_Mutation	SNP	T	TCGA-OR-A5KB-01A-11D-A30A-10	1517573	15083539	44045444	2024	7398										
PGLYRP2	114770	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	15586650	15586650	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tctccaaggatgaccccatcCagggcgccattgaggaaggc	12	13	1	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PGLYRP2-93	NM_052890	exon2	c.G831C	p.L277L	CCCATCCAGGGCG	.	55	12	59	0	.	0	0	0	0	0	G	15586650	C	G	15586650	2	3	31	1	0	0	0	0	0	0	0	1	11823	581	21	3		3	PGLYRP2	19	15586650	Silent	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	503111	15586650	43542333	2025	7399										
CYP4F3	4051	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	15752302	15752302	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gctgctcctgctgctggttgGggcctcctggctcctggccc	14	16	0	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CYP4F3-93	NM_001199209	exon2	c.G77A	p.G26E	TGGTTGGGGCCTC	.	121	69	133	0	.	0	0	0	0	0	A	15752302	G	A	15752302	3	1	31	1	0	0	0	0	1	0	0	0	4196	1232	43	3	79	3	CYP4F3	19	15752302	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	165652	15752302	43376681	2026	7400										
SIN3B	23309	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	16973222	16973222	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gggggtaaaagagctgtcctTcgcgccacccatgagcgaca	13	12	0	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SIN3B-228	NM_015260	exon9	c.T1118A	p.F373Y	TGTCCTTCGCGCC	.	58	29	84	0	.	0	0	0	0	0	A	16973222	T	A	16973222	3	1	31	1	0	0	0	0	1	0	0	0	14361	1783	62	5	1152	5	SIN3B	19	16973222	Missense_Mutation	SNP	T	TCGA-OR-A5KB-01A-11D-A30A-10	1220920	16973222	42155761	2027	7401										
MYO9B	4650	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	17303667	17303667	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gatggtgctggagcgtcggcActtcctgcagatgaagcggg	17	9	0	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MYO9B-67	NM_001130065	exon21	c.A2924T	p.H975L	GTCGGCACTTCCT	.	154	93	107	0	.	0	0	0	0	0	T	17303667	A	T	17303667	3	4	31	1	0	0	0	0	1	0	0	0	10113	159	6	5	3002	5	MYO9B	19	17303667	Missense_Mutation	SNP	A	TCGA-OR-A5KB-01A-11D-A30A-10	330445	17303667	41825316	2028	7402										
FAM129C	199786	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	17643172	17643172	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tgttctgcgtggggacggccGcctagagtggttcagccaca	15	11	2	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FAM129C-90	NM_001098524	exon4	c.G380T	p.R127L	ACGGCCGCCTAGA	.	172	105	199	0	.	0	0	0	0	0	T	17643172	G	T	17643172	3	4	31	1	0	0	0	0	1	0	0	0	5454	1087	38	2	394	2	FAM129C	19	17643172	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	339505	17643172	41485811	2029	7403										
ZNF90	7643	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	20228898	20228898	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ctttcaaatgtatagaatgtGgcaaagctttcaaccagtcc	7	9	2	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ZNF90-48	NM_007138	exon4	c.G535T	p.G179C	GAATGTGGCAAAG	.	54	21	62	0	.	0	0	0	0	0	T	20228898	G	T	20228898	3	4	31	1	0	0	0	0	1	0	0	0	18236	1348	47	3	549	3	ZNF90	19	20228898	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	2585726	20228898	38900085	2030	7404										
ZNF675	171392	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	23844980	23844980	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tctttttcttgctccagacaGgtgatcaggtcttgcttaga	9	9	4	3	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ZNF675-228	NM_138330	exon3	c.C162T	p.T54T	CAGACAGGTGATC	.	36	17	45	0	.	0	0	0	0	0	A	23844980	G	A	23844980	2	1	31	1	0	0	0	0	0	0	0	1	18119	987	35	3		3	ZNF675	19	23844980	Silent	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	3616082	23844980	35284003	2031	7405										
TSHZ3	57616	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	31767667	31767667	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tctgactgttaatctgttcgGtggacagtttggataagtcc	11	7	2	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TSHZ3-232	NM_020856	exon2	c.C3032G	p.T1011S	TGTTCGGTGGACA	.	198	112	316	0	.	0	0	0	0	0	C	31767667	G	C	31767667	3	2	31	1	0	0	0	0	1	0	0	0	16663	1261	44	3	217	3	TSHZ3	19	31767667	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	7922687	31767667	27361316	2032	7406										
TSHZ3	57616	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	31768123	31768123	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	aaggagtggaggattttgacGtgtggctctctgtcaagttc	14	6	2	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TSHZ3-232	NM_020856	exon2	c.C2576A	p.T859K	TTTGACGTGTGGC	.	106	61	157	0	.	0	0	0	0	0	T	31768123	G	T	31768123	3	4	31	1	0	0	0	0	1	0	0	0	16663	1145	40	2	673	2	TSHZ3	19	31768123	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	456	31768123	27360860	2033	7407										
TSHZ3	57616	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	31769009	31769010	+	Missense_Mutation	DNP	GG	GG	CT													0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gctcttccccgacgagcccaGggacaacttcatcatgttgg					novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	GG	GG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TSHZ3-232	NM_020856	exon2	c.C1689A	p.L564V	GCCCAGGGACAAC	.	156	0	211	0	.	0	0	0	0	0	CT	31769010	GG	CT	31769009	3	2	31	1	0	0	0	0	1	0	0	0	16663	991	35	3	1559	3	TSHZ3	19	31769009	Missense_Mutation	DNP	GG	TCGA-OR-A5KB-01A-11D-A30A-10	886	31769009	27359974	2034	7408										
ZNF599	148103	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	35260460	35260460	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gtcttcaaatgatactaatgCctgggaagtcaaacagaggt	10	7	3	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ZNF599-92	NM_001007248	exon2	c.G19T	p.A7S	CTAATGCCTGGGA	.	58	36	92	0	.	0	0	0	0	0	A	35260460	C	A	35260460	3	1	31	1	0	0	0	0	1	0	0	0	18066	753	26	3	1759	3	ZNF599	19	35260460	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	3491451	35260460	23868523	2035	7409										
MAG	4099	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	35786525	35786525	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cttgcccgcagcctcccgagGgggtcactggggtgcctgga	16	14	1	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MAG-947	NM_080600	exon4	c.G56T	p.G19V	CCCGAGGGGGTCA	.	57	30	69	0	.	0	0	0	0	0	T	35786525	G	T	35786525	3	4	31	1	0	0	0	0	1	0	0	0	9190	1232	43	3	62	3	MAG	19	35786525	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	526065	35786525	23342458	2036	7410										
ZFP82	284406	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	36884174	36884174	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tcaccagtatgaattctctgAtggagtgttagttgttgtcg	11	6	2	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ZFP82-91	NM_133466	exon5	c.T1068C	p.H356H	TCTCTGATGGAGT	.	48	30	77	0	.	0	0	0	0	0	G	36884174	A	G	36884174	2	3	31	1	0	0	0	0	0	0	0	1	17690	330	12	4		4	ZFP82	19	36884174	Silent	SNP	A	TCGA-OR-A5KB-01A-11D-A30A-10	1097649	36884174	22244809	2037	7411										
ZNF382	84911	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	37100830	37100830	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ctagagtatgcccttacaggGatcagtgtcattcaaggatg	11	8	3	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ZNF382-90	NM_032825	exon3	c.G14T	p.G5V	TACAGGGATCAGT	.	157	85	172	0	.	0	0	0	0	0	T	37100830	G	T	37100830	3	4	31	1	0	0	0	0	1	0	0	0	17910	1174	41	3	16	3	ZNF382	19	37100830	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	216656	37100830	22028153	2038	7412										
SIPA1L3	23094	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr19	38572624	38572624	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	agggtccaaagccttccaccGactctccaggagaaggtcca	10	14	1	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SIPA1L3-91	NM_015073	exon3	c.G419A	p.R140Q	TCCACCGACTCTC	.	84	23	120	0	.	0	0	0	0	0	A	38572624	G	A	38572624	3	1	31	1	0	0	0	0	1	0	0	0	14366	1058	37	1	421	1	SIPA1L3	19	38572624	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	1471794	38572624	20556359	2039	7413										
SIPA1L3	23094	hgsc.bcm.edu	37	chr19	38572784	38572784	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ccgcggggggcccggcacacGggggcgctgcccctcttccg	17	18	1	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SIPA1L3-91	NM_015073	exon3	c.G579T	p.T193T	GCACACGGGGGCG	.	37	24	3	0	.	0	0	0	0	0	T	38572784	G	T	38572784	2	4	31	1	0	0	0	0	0	0	0	1	14366	1103	39	2		2	SIPA1L3	19	38572784	Silent	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	160	38572784	20556199	2040	7414										
RYR1	6261	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	38954426	38954426	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ggctgcacccgtgtcttgtgGacttccacagccttccagag	11	14	1	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	RYR1-100	NM_001042723	exon22	c.G2722T	p.D908Y	CTTGTGGACTTCC	.	88	52	107	0	.	0	0	0	0	0	T	38954426	G	T	38954426	3	4	31	1	0	0	0	0	1	0	0	0	13803	1174	41	3	2808	3	RYR1	19	38954426	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	381642	38954426	20174557	2041	7415										
MAP4K1	11184	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	39103252	39103252	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ggaccccacgcctgcctaccTgagagggtgcacatcaaaga	11	14	1	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MAP4K1-980	NM_007181	exon9	c.A664C	p.R222R	CCTACCTGAGAGG	.	38	24	52	0	.	0	0	0	0	0	G	39103252	T	G	39103252	2	3	31	1	0	0	0	0	0	0	0	1	9287	1594	55	5		5	MAP4K1	19	39103252	Silent	SNP	T	TCGA-OR-A5KB-01A-11D-A30A-10	148826	39103252	20025731	2042	7416										
RINL	126432	hgsc.bcm.edu	37	chr19	39360720	39360720	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ggctccgcaaggcgggggcgGggctctgcccttccggtccc	17	16	1	0	rs8110393		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	RINL-91	NM_001195833	exon9	c.C1205T	p.P402L	GGGGCGGGGCTCT	.	15	14	0	0	G|0.349;A|0.651	0	0	0	0	0	A	39360720	G	A	39360720	3	1	31	1	0	0	0	0	1	0	0	0	13410	1232	43	3	511	3	RINL	19	39360720	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	257468	39360720	19768263	2043	7417										
PAPL	0	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr19	39589631	39589631	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ggcagtgcgcagggctggagCcgtcggttccgcttcagggc	18	12	1	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_001004318	exon4	c.C354A	p.S118R	CTGGAGCCGTCGG	.	28	16	50	0	.	0	0	0	0	0	A	39589631	C	A	39589631	3	1	31	1	0	0	0	0	1	0	0	0	11456	738	26	3	364	3	PAPL	19	39589631	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	228911	39589631	19539352	2044	7418										
SUPT5H	6829	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	39959793	39959793	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ccagagggcattgacctggaGgtggtgactgagagcacagg	17	8	0	4	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SUPT5H-94	NM_003169	exon14	c.G1218T	p.E406D	CCTGGAGGTGGTG	.	146	89	223	1	.	0	0	0	0	0	T	39959793	G	T	39959793	3	4	31	1	0	0	0	0	1	0	0	0	15436	991	35	3	1272	3	SUPT5H	19	39959793	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	370162	39959793	19169190	2045	7419										
SERTAD1	29950	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	40929113	40929113	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cctccaggaggctggccatgGaggctgaaagggcagcgtcc	16	12	0	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SERTAD1-226	NM_013376	exon2	c.C341T	p.S114F	GCCATGGAGGCTG	.	138	16	95	0	.	0	0	0	0	0	A	40929113	G	A	40929113	3	1	31	1	0	0	0	0	1	0	0	0	14155	1174	41	3	373	3	SERTAD1	19	40929113	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	969320	40929113	18199870	2046	7420										
NUMBL	9253	ucsc.edu	37	chr19	41173871	41173871	+	Silent	SNP	C	C	T													0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gccactgaggctgcttgctgCtgttgctgctgctgctgctg					rs62637692		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	NUMBL-637	NM_004756	exon10	c.G1332A	p.Q444Q	TTGCTGCTGTTGC	.	57	20	47	7	C|0.982;T|0.018	0	0	0	0	0	T	41173871	C	T	41173871	2	4	31	1	0	0	0	0	0	0	0	1	10781	796	28	3		3	NUMBL	19	41173871	Silent	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	244758	41173871	17955112	2047	7421	77	3								
NUMBL	9253	ucsc.edu	37	chr19	41173874	41173874	+	Silent	SNP	T	T	C													0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	actgaggctgcttgctgctgTtgctgctgctgctgctgctg					rs62637691		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	NUMBL-637	NM_004756	exon10	c.A1329G	p.Q443Q	CTGCTGTTGCTGC	.	56	22	48	7	T|0.981;C|0.019	0	0	0	0	0	C	41173874	T	C	41173874	2	2	31	1	0	0	0	0	0	0	0	1	10781	1722	60	4		4	NUMBL	19	41173874	Silent	SNP	T	TCGA-OR-A5KB-01A-11D-A30A-10	3	41173874	17955109	2048	7422	77	3								
NUMBL	9253	hgsc.bcm.edu	37	chr19	41173883	41173883	+	Silent	SNP	C	C	T													0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gcttgctgctgttgctgctgCtgctgctgctgctgttgctg					novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	NUMBL-637	NM_004756	exon10	c.G1320A	p.Q440Q	CTGCTGCTGCTGC	.	58	4	51	0	.	0	0	0	0	0	T	41173883	C	T	41173883	2	4	31	1	0	0	0	0	0	0	0	1	10781	796	28	3		3	NUMBL	19	41173883	Silent	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	9	41173883	17955100	2049	7423	77	3								
PSG9	5678	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	43766262	43766262	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tccctggggtttaagttgctGctggagatgtagggcttggg	17	6	0	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PSG9-92	NM_002784	exon3	c.C459A	p.S153R	GTTGCTGCTGGAG	.	73	30	118	0	.	0	0	0	0	0	T	43766262	G	T	43766262	3	4	31	1	0	0	0	0	1	0	0	0	12694	1310	46	3	837	3	PSG9	19	43766262	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	2592379	43766262	15362721	2050	7424										
PHLDB3	653583	hgsc.bcm.edu	37	chr19	44005886	44005886	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	acccggtgagccaaacagacCtgttcccgctgctggcggcc	12	16	0	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PHLDB3-68	NM_198850	exon4	c.G534A	p.Q178Q	ACAGACCTGTTCC	.	9	7	0	0	.	0	0	0	0	0	T	44005886	C	T	44005886	2	4	31	1	0	0	0	0	0	0	0	1	11882	695	24	3		3	PHLDB3	19	44005886	Silent	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	239624	44005886	15123097	2051	7425										
MARK4	57787	broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr19	45801154	45801154	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	aggctgcacccctgcccgccGggcggccccgccccaccacc	11	24	0	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MARK4-782	NM_001199867	exon15	c.G1819T	p.G607W	CCCGCCGGGCGGC	.	76	49	27	2	.	0	0	0	0	0	T	45801154	G	T	45801154	3	4	31	1	0	0	0	0	1	0	0	0	9343	1116	39	2	1877	2	MARK4	19	45801154	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	1795268	45801154	13327829	2052	7426										
GPR4	2828	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	46094390	46094390	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	aggtagatggcgctgcgggaCagcaagagcacgtgataggg	18	7	0	3	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GPR4-92	NM_005282	exon2	c.G735A	p.L245L	GCGGGACAGCAAG	.	74	41	65	1	.	0	0	0	0	0	T	46094390	C	T	46094390	2	4	31	1	0	0	0	0	0	0	0	1	6714	465	17	3		3	GPR4	19	46094390	Silent	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	293236	46094390	13034593	2053	7427										
DACT3	147906	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	47156013	47156013	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	agagaagccactgtccccacAgaaggttgagggtggtgaat	14	8	0	4	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_145056	exon3	c.T403A	p.C135S	CCCCACAGAAGGT	.	39	23	69	0	.	0	0	0	0	0	T	47156013	A	T	47156013	3	4	31	1	0	0	0	0	1	0	0	0	4229	188	7	5	1494	5	DACT3	19	47156013	Missense_Mutation	SNP	A	TCGA-OR-A5KB-01A-11D-A30A-10	1061623	47156013	11972970	2054	7428										
MEIS3	56917	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	47920493	47920493	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gtccaagcctgggggcagggGctggggaggccggtgcgggc	23	10	0	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MEIS3-90	NM_001009813	exon2	c.C127G	p.P43A	GCAGGGGCTGGGG	.	112	64	87	0	.	0	0	0	0	0	C	47920493	G	C	47920493	3	2	31	1	0	0	0	0	1	0	0	0	9497	1203	42	3	1182	3	MEIS3	19	47920493	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	764480	47920493	11208490	2055	7429										
SLC8A2	6543	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	chr19	47951225	47951225	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ccacggtgcccatgcactcgCtcacgtgcagcaggcggtcc	12	17	1	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SLC8A2-94	NM_015063	exon4	c.G1604A	p.S535N	CACTCGCTCACGT	.	63	35	18	0	.	0	0	0	0	0	T	47951225	C	T	47951225	3	4	31	1	0	0	0	0	1	0	0	0	14742	797	28	3	1189	3	SLC8A2	19	47951225	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	30732	47951225	11177758	2056	7430										
GLTSCR1	29998	hgsc.bcm.edu	37	chr19	48183685	48183685	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gcttccccgcgcctgcgctgCaagcgaacgtcttcaagcag	11	16	2	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GLTSCR1-48	NM_015711	exon6	c.C1258T	p.Q420X	GCGCTGCAAGCGA	.	20	8	1	0	.	0	0	0	0	0	T	48183685	C	T	48183685	4	4	31	1	0	0	0	0	0	1	0	0	6494	711	25	3	1272	3	GLTSCR1	19	48183685	Nonsense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	232460	48183685	10945298	2057	7431										
GLTSCR2	29997	hgsc.bcm.edu	37	chr19	48258717	48258717	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ggcggagctggcgcggcggcAgaggcggcggcaggcgcggc	24	12	0	1	rs1804994	byfrequency	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GLTSCR2-514	NM_015710	exon9	c.A1166G	p.Q389R	GGCGGCAGAGGCG	.	7	7	0	0	A|0.308;G|0.692	0	0	0	0	0	G	48258717	A	G	48258717	3	3	31	1	0	0	0	0	1	0	0	0	6495	188	7	4	1200	4	GLTSCR2	19	48258717	Missense_Mutation	SNP	A	TCGA-OR-A5KB-01A-11D-A30A-10	75032	48258717	10870266	2058	7432										
RPL13A	23521	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr19	49994074	49994074	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ccaagcgaggccaggccgctCtggaccgtctcaaggtgttt	13	13	2	0	rs1061320	alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	RPL13A-90	NM_012423	exon5	c.C295G	p.L99V	GCCGCTCTGGACC	.	201	125	238	0	C|1.000;|0.000	0	0	0	0	0	G	49994074	C	G	49994074	3	3	31	1	0	0	0	0	1	0	0	0	13595	912	32	3	313	3	RPL13A	19	49994074	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	1735357	49994074	9134909	2059	7433										
SCAF1	58506	hgsc.bcm.edu	37	chr19	50155523	50155523	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ttcctcatcgtcgtcctcgaGgcgcgagcggcaccgcggga	14	15	1	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SCAF1-68	NM_021228	exon7	c.G1877T	p.R626M	CCTCGAGGCGCGA	.	20	13	2	0	.	0	0	0	0	0	T	50155523	G	T	50155523	3	4	31	1	0	0	0	0	1	0	0	0	13903	1000	35	3	1899	3	SCAF1	19	50155523	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	161449	50155523	8973460	2060	7434										
CPT1C	126129	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	50209636	50209636	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cagcgtcgttggatgcctacGcccatgctctgctggccggc	13	15	1	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CPT1C-92	NM_001199752	exon12	c.G1309A	p.A437T	GCCTACGCCCATG	.	83	45	54	1	.	0	0	0	0	0	A	50209636	G	A	50209636	3	1	31	1	0	0	0	0	1	0	0	0	3839	1087	38	1	1347	1	CPT1C	19	50209636	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	54113	50209636	8919347	2061	7435										
IL4I1	259307	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	50404912	50404912	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tcactgcatggctgcctctgGggggctctctcagcacccat	11	15	4	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	IL4I1-523	NM_172374	exon4	c.C63A	p.P21P	CCTCTGGGGGGCT	.	81	54	60	0	.	0	0	0	0	0	T	50404912	G	T	50404912	2	4	31	1	0	0	0	0	0	0	0	1	7718	1219	43	3		3	IL4I1	19	50404912	Silent	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	195276	50404912	8724071	2062	7436										
MYBPC2	4606	hgsc.bcm.edu	37	chr19	50962397	50962397	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cggccccaggtggtgtggacCaagggcggggccccgctgga	19	13	0	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MYBPC2-67	NM_004533	exon23	c.C2625A	p.T875T	GTGGACCAAGGGC	.	41	22	3	0	.	0	0	0	0	0	A	50962397	C	A	50962397	2	1	31	1	0	0	0	0	0	0	0	1	10040	581	21	3		3	MYBPC2	19	50962397	Silent	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	557485	50962397	8166586	2063	7437										
KLK7	5650	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	51480918	51480918	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	accagaccttgcagggtaccTctgcacaccaacggtccccc	8	18	1	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	KLK7-650	NM_139277	exon6	c.A636T	p.R212S	GGTACCTCTGCAC	.	99	57	113	0	.	0	0	0	0	0	A	51480918	T	A	51480918	3	1	31	1	0	0	0	0	1	0	0	0	8430	1548	54	5	129	5	KLK7	19	51480918	Missense_Mutation	SNP	T	TCGA-OR-A5KB-01A-11D-A30A-10	518521	51480918	7648065	2064	7438										
SIGLEC8	27181	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	51958781	51958781	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ctcacgtgcactcgaggcagCtccagcagcccagggtttga	12	14	1	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SIGLEC8-94	NM_014442	exon4	c.G942T	p.E314D	AGGCAGCTCCAGC	.	152	93	175	1	.	0	0	0	0	0	A	51958781	C	A	51958781	3	1	31	1	0	0	0	0	1	0	0	0	14349	796	28	3	573	3	SIGLEC8	19	51958781	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	477863	51958781	7170202	2065	7439										
SIGLEC8	27181	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	51961365	51961365	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	aaggagttggaatcggccctGggtctctgcctgcacttctc	12	12	2	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SIGLEC8-94	NM_014442	exon1	c.C277G	p.Q93E	GGCCCTGGGTCTC	.	177	108	280	1	.	0	0	0	0	0	C	51961365	G	C	51961365	3	2	31	1	0	0	0	0	1	0	0	0	14349	1357	47	3	1250	3	SIGLEC8	19	51961365	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	2584	51961365	7167618	2066	7440										
FPR2	2358	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	52272299	52272299	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gctgcatttgtgtcctgcatCcagtctgggcccagaaccac	10	14	1	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FPR2-501	NM_001005738	exon2	c.C388G	p.P130A	CTGCATCCAGTCT	.	106	66	132	0	.	0	0	0	0	0	G	52272299	C	G	52272299	3	3	31	1	0	0	0	0	1	0	0	0	6058	855	30	3	390	3	FPR2	19	52272299	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	310934	52272299	6856684	2067	7441										
LILRB3	11025	bcgsc.ca	37	chr19	54722275	54722275	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tcagactgtgtgtccttcacGgcagcatctgctggggcaga	13	11	3	2	rs56528424		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	LILRB3-93	NM_006864	exon11	c.C1548T	p.A516A	CTTCACGGCAGCA	.	261	7	318	2	.	0	0	0	0	0	A	54722275	G	A	54722275	2	1	31	1	0	0	0	0	0	0	0	1	8815	1103	39	1		1	LILRB3	19	54722275	Silent	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	2449976	54722275	4406708	2068	7442										
LILRA6	79168	bcgsc.ca	37	chr19	54744361	54744361	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	agaaggaaagtgtcaaaataAccccgtgactgacacagcag	10	9	1	3	rs2361801	byfrequency	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	LILRA6-24	NM_024318	exon6	c.T1047G	p.G349G	AAAATAACCCCGT	.	396	31	513	28	C|0.414;A|0.586	0	0	0	0	0	C	54744361	A	C	54744361	2	2	31	1	0	0	0	0	0	0	0	1	8812	30	2	5		5	LILRA6	19	54744361	Silent	SNP	A	TCGA-OR-A5KB-01A-11D-A30A-10	22086	54744361	4384622	2069	7443			4	33		3	3	81	N	C_A	1.896403e-05
LILRA6	79168	bcgsc.ca	37	chr19	54744387	54744387	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tgactgacacagcagggtcaCgttctctcctgaggccactg	11	13	2	3	rs71263238	byfrequency	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	LILRA6-24	NM_024318	exon6	c.G1021A	p.V341M	GGGTCACGTTCTC	.	351	9	436	4	C|0.659;T|0.341	0	0	0	0	0	T	54744387	C	T	54744387	3	4	31	1	0	0	0	0	1	0	0	0	8812	536	19	1	436	1	LILRA6	19	54744387	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	26	54744387	4384596	2070	7444			4	33		3	3	81	N	C_A	1.896403e-05
LILRA6	79168	broad.mit.edu	37	chr19	54744441	54744441	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tgctgacagggagacggtgtCatagatctgtcctggagaga	15	7	2	4	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	LILRA6-24	NM_024318	exon6	c.G967C	p.D323H	CGGTGTCATAGAT	.	232	5	274	0	.	0	0	0	0	0	G	54744441	C	G	54744441	3	3	31	1	0	0	0	0	1	0	0	0	8812	826	29	3	490	3	LILRA6	19	54744441	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	54	54744441	4384542	2071	7445			4	33		3	3	81	N	C_A	1.896403e-05
TTYH1	57348	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr19	54930366	54930366	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gagcctcattttcatcgctgTctacctcatccgcttctgct	6	15	5	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TTYH1-90	NM_020659	exon2	c.T191C	p.V64A	TCGCTGTCTACCT	.	57	39	59	0	.	0	0	0	0	0	C	54930366	T	C	54930366	3	2	31	1	0	0	0	0	1	0	0	0	16777	1667	58	4	197	4	TTYH1	19	54930366	Missense_Mutation	SNP	T	TCGA-OR-A5KB-01A-11D-A30A-10	185925	54930366	4198617	2072	7446										
NLRP7	199713	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	55451819	55451819	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gtttctccattgaatttctcCatccttccttttcacctgca	3	14	3	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	NLRP7-291	NM_001127255	exon4	c.G368T	p.W123L	TTTCTCCATCCTT	.	40	26	41	0	.	0	0	0	0	0	A	55451819	C	A	55451819	3	1	31	1	0	0	0	0	1	0	0	0	10511	595	21	3	2777	3	NLRP7	19	55451819	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	521453	55451819	3677164	2073	7447										
NLRP2	55655	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	55481494	55481494	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	acgaccttctccctggcacaCgagctccagaagatccccca	7	18	1	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	NLRP2-120	NM_001174082	exon2	c.C111A	p.H37Q	GGCACACGAGCTC	.	160	90	179	2	.	0	0	0	0	0	A	55481494	C	A	55481494	3	1	31	1	0	0	0	0	1	0	0	0	10506	535	19	2	113	2	NLRP2	19	55481494	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	29675	55481494	3647489	2074	7448										
NLRP4	147945	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	56369475	56369475	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cttcgaagagctgcagggcgGcttgaacgaacccgattcgg	14	11	0	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	NLRP4-216	NM_134444	exon3	c.G716C	p.G239A	AGGGCGGCTTGAA	.	109	64	146	0	.	0	0	0	0	0	C	56369475	G	C	56369475	3	2	31	1	0	0	0	0	1	0	0	0	10508	1203	42	3	722	3	NLRP4	19	56369475	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	887981	56369475	2759508	2075	7449										
NLRP8	126205	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	56466259	56466259	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	caaagattatgtccaaacccGaccaacttctgctgctcttg	6	13	2	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	NLRP8-361	NM_176811	exon3	c.G835T	p.D279Y	AAACCCGACCAAC	.	96	58	139	1	.	0	0	0	0	0	T	56466259	G	T	56466259	3	4	31	1	0	0	0	0	1	0	0	0	10512	1058	37	2	845	2	NLRP8	19	56466259	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	96784	56466259	2662724	2076	7450										
NLRP8	126205	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	56466706	56466706	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	caaatgccacctctgtgttcGtccggtatatttctagcttg	8	11	2	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	NLRP8-361	NM_176811	exon3	c.G1282T	p.V428F	GTGTTCGTCCGGT	.	88	47	126	0	.	0	0	0	0	0	T	56466706	G	T	56466706	3	4	31	1	0	0	0	0	1	0	0	0	10512	1145	40	2	1292	2	NLRP8	19	56466706	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	447	56466706	2662277	2077	7451										
NLRP5	126206	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	56539330	56539330	+	Missense_Mutation	SNP	G	G	C													0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ctcccagacagccactgtgaGgagtactacaccttcttcca					novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	NLRP5-162	NM_153447	exon7	c.G1731C	p.E577D	CTGTGAGGAGTAC	.	143	81	157	1	.	0	0	0	0	0	C	56539330	G	C	56539330	3	2	31	1	0	0	0	0	1	0	0	0	10509	991	35	3	1757	3	NLRP5	19	56539330	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	72624	56539330	2589653	2078	7452	78	2								
NLRP5	126206	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	56539331	56539331	+	Nonsense_Mutation	SNP	G	G	T													0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tcccagacagccactgtgagGagtactacaccttcttccac					novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	NLRP5-162	NM_153447	exon7	c.G1732T	p.E578X	TGTGAGGAGTACT	.	141	79	160	1	.	0	0	0	0	0	T	56539331	G	T	56539331	4	4	31	1	0	0	0	0	0	1	0	0	10509	1175	41	3	1758	3	NLRP5	19	56539331	Nonsense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	1	56539331	2589652	2079	7453	78	2								
NLRP5	126206	broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr19	56569695	56569695	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tctgaccagtctaaacctggTgcagaataacttcagtccca	7	12	3	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	NLRP5-162	NM_153447	exon14	c.T3389A	p.V1130E	ACCTGGTGCAGAA	.	94	54	94	1	.	0	0	0	0	0	A	56569695	T	A	56569695	3	1	31	1	0	0	0	0	1	0	0	0	10509	1696	59	5	3443	5	NLRP5	19	56569695	Missense_Mutation	SNP	T	TCGA-OR-A5KB-01A-11D-A30A-10	30364	56569695	2559288	2080	7454										
PEG3	5178	ucsc.edu;bcgsc.ca	37	chr19	57325099	57325099	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	caggcggtcattgaagagctGcccacagacgtcacatttga	11	11	2	4	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PEG3-164	NM_001146184	exon9	c.C4711G	p.Q1571E	AGAGCTGCCCACA	.	165	90	249	2	.	0	0	0	0	0	C	57325099	G	C	57325099	3	2	31	1	0	0	0	0	1	0	0	0	11749	1328	46	3	59	3	PEG3	19	57325099	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	755404	57325099	1803884	2081	7455										
PEG3	5178	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	57334984	57334984	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	aagaatggactgagtgaggtGgtgaggactctcttctgttc	14	6	2	4	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PEG3-164	NM_001146184	exon4	c.C458A	p.P153Q	TGAGGTGGTGAGG	.	166	92	217	0	.	0	0	0	0	0	T	57334984	G	T	57334984	3	4	31	1	0	0	0	0	1	0	0	0	11749	1348	47	3	4338	3	PEG3	19	57334984	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	9885	57334984	1793999	2082	7456										
DUXA	503835	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	57672059	57672059	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tctaaagcaagtttttgtttGgtagcataacctgggtaagg	11	5	1	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DUXA-91	NM_001012729	exon2	c.C132A	p.T44T	TTGTTTGGTAGCA	.	54	29	45	1	.	0	0	0	0	0	T	57672059	G	T	57672059	2	4	31	1	0	0	0	0	0	0	0	1	4845	1335	47	3		3	DUXA	19	57672059	Silent	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	337075	57672059	1456924	2083	7457										
AURKC	6795	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr19	57746327	57746327	+	Frame_Shift_Del	DEL	G	G	-													0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	agaacatatgatgaaaaggtGgatttgtggtgcattggagt					novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	AURKC-1560	NM_001015878	exon6	c.660delG	p.V220fs	AAAGGTGGATTTG	.	137	61	188	0	.	0	0	0	0	0	-	57746327	G	-	57746327	7	5	31	1	0	1	0	1	0	0	0	0	1225	1335	47	0	687	0	AURKC	19	57746327	Frame_Shift_Del	DEL	G	TCGA-OR-A5KB-01A-11D-A30A-10	74268	57746327	1382656	2084	7458										
ZNF17	7565	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	57932542	57932542	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tgagtgcactgagtgtgggaGagtttttagccaaaattccc	12	7	0	3	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ZNF17-90	NM_006959	exon3	c.G1682T	p.R561I	GTGGGAGAGTTTT	.	68	44	91	1	.	0	0	0	0	0	T	57932542	G	T	57932542	3	4	31	1	0	0	0	0	1	0	0	0	17780	942	33	3	1692	3	ZNF17	19	57932542	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	186215	57932542	1196441	2085	7459										
ZNF530	348327	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	58117486	58117486	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cattgagagaccacacagcaGgattagacacttgagagttc	10	9	0	4	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ZNF530-90	NM_020880	exon3	c.G593C	p.R198T	ACAGCAGGATTAG	.	95	63	119	1	.	0	0	0	0	0	C	58117486	G	C	58117486	3	2	31	1	0	0	0	0	1	0	0	0	18008	1000	35	3	603	3	ZNF530	19	58117486	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	184944	58117486	1011497	2086	7460										
ZNF211	10520	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	58152335	58152335	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	agaggcagcacattacagagGcacctttcagaagttatgtg	11	8	1	3	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ZNF211-92	NM_001265597	exon5	c.G676A	p.A226T	ACAGAGGCACCTT	.	119	71	167	1	.	0	0	0	0	0	A	58152335	G	A	58152335	3	1	31	1	0	0	0	0	1	0	0	0	17804	1203	42	3	534	3	ZNF211	19	58152335	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	34849	58152335	976648	2087	7461										
ZNF551	90233	broad.mit.edu;bcgsc.ca	37	chr19	58199642	58199642	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gacatcggagagttcacactGaagaaaggccttaaatgtga	11	7	1	4	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ZNF551-91	NM_138347	exon3	c.G1999A	p.E667K	CACACTGAAGAAA	.	46	21	79	2	.	0	0	0	0	0	A	58199642	G	A	58199642	3	1	31	1	0	0	0	0	1	0	0	0	18020	1291	45	3	1961	3	ZNF551	19	58199642	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	47307	58199642	929341	2088	7462										
A1BG	1	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	58864353	58864353	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	atcctgtggacaagcccgagCggcagcggtagcggccctgg	16	13	0	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	A1BG-90	NM_130786	exon3	c.G281A	p.R94H	CCCGAGCGGCAGC	.	90	25	121	0	.	0	0	0	0	0	T	58864353	C	T	58864353	3	4	31	1	0	0	0	0	1	0	0	0	1	768	27	1	1230	1	A1BG	19	58864353	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	664711	58864353	264630	2089	7463										
SIRPG	55423	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr20	1610940	1610940	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tgaggagcagcgcagtaaggGatgatgccgggcctggaaat	17	7	0	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SIRPG-23	NM_018556	exon5	c.C1094G	p.S365C	GTAAGGGATGATG	.	40	12	78	0	.	0	0	0	0	0	C	1610940	G	C	1610940	3	2	31	1	0	0	0	0	1	0	0	0	14371	1174	41	3	73	3	SIRPG	20	1610940	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10		1610940	61414580	2090	7464										
TGM6	343641	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr20	2398147	2398147	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tcaacctgagcggtgccaccAtcctctatacccgcaagcca	7	17	2	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TGM6-94	NM_198994	exon10	c.A1606G	p.I536V	GCCACCATCCTCT	.	40	11	26	0	.	0	0	0	0	0	G	2398147	A	G	2398147	3	3	31	1	0	0	0	0	1	0	0	0	15871	217	8	4	1644	4	TGM6	20	2398147	Missense_Mutation	SNP	A	TCGA-OR-A5KB-01A-11D-A30A-10	787207	2398147	60627373	2091	7465										
TMC2	117532	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr20	2542507	2542507	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cctggctctgcctccaggtcAtcctccttggcctccagtgc	9	18	2	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TMC2-93	NM_080751	exon4	c.A405T	p.S135S	CAGGTCATCCTCC	.	120	26	166	0	.	0	0	0	0	0	T	2542507	A	T	2542507	2	4	31	1	0	0	0	0	0	0	0	1	16022	204	8	5		5	TMC2	20	2542507	Silent	SNP	A	TCGA-OR-A5KB-01A-11D-A30A-10	144360	2542507	60483013	2092	7466										
PTPRA	5786	broad.mit.edu	37	chr20	3008372	3008372	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gggctaccggcagaaggactCctatatcgccagccagggcc	13	14	0	1	rs138028158	byfrequency	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PTPRA-227	NM_002836	exon24	c.C1805G	p.S602C	AGGACTCCTATAT	.	98	4	88	0	C|0.999;G|0.001	0	0	0	0	0	G	3008372	C	G	3008372	3	3	31	1	0	0	0	0	1	0	0	0	12830	855	30	3	1871	3	PTPRA	20	3008372	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	465865	3008372	60017148	2093	7467										
SLC4A11	83959	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr20	3218585	3218585	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	agaaaaccctgccccgctgcAgcgagaggaagggaccgggc	15	13	0	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SLC4A11-91	NM_001174090	exon1	c.T126A	p.A42A	CGCTGCAGCGAGA	.	54	17	88	0	.	0	0	0	0	0	T	3218585	A	T	3218585	2	4	31	1	0	0	0	0	0	0	0	1	14687	175	7	5		5	SLC4A11	20	3218585	Silent	SNP	A	TCGA-OR-A5KB-01A-11D-A30A-10	210213	3218585	59806935	2094	7468										
ATRN	8455	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr20	3624815	3624815	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tgccagactgttcccaaaccCattgcactggagccgtgttt	9	13	0	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ATRN-154	NM_139321	exon28	c.C4065T	p.P1355P	CAAACCCATTGCA	.	78	25	127	0	.	0	0	0	0	0	T	3624815	C	T	3624815	2	4	31	1	0	0	0	0	0	0	0	1	1207	581	21	3		3	ATRN	20	3624815	Silent	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	406230	3624815	59400705	2095	7469										
PROKR2	128674	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr20	5283022	5283022	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	atgcacatgagcaccaggacCgtcttcctgcggcagcgcag	12	14	1	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PROKR2-94	NM_144773	exon2	c.G819T	p.T273T	CAGGACCGTCTTC	.	132	42	167	0	.	0	0	0	0	0	A	5283022	C	A	5283022	2	1	31	1	0	0	0	0	0	0	0	1	12585	639	23	2		2	PROKR2	20	5283022	Silent	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	1658207	5283022	57742498	2096	7470										
CHGB	1114	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr20	5903995	5903995	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	taagatggcacatggatatgGtgaagaaagtgaggaagaga	15	2	0	5	rs200027232	alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CHGB-96	NM_001819	exon4	c.G1205T	p.G402V	GATATGGTGAAGA	.	21	5	51	0	G|0.999;A|0.001	0	0	0	0	0	T	5903995	G	T	5903995	3	4	31	1	0	0	0	0	1	0	0	0	3345	1261	44	3	1219	3	CHGB	20	5903995	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	620973	5903995	57121525	2097	7471										
CHGB	1114	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr20	5904314	5904315	+	Missense_Mutation	DNP	CC	CC	AA													0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	caagataaacaatatagctcCcatcacacagctgaaaagag					novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	CC	CC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CHGB-96	NM_001819	exon4	c.C1525A	p.H509N	AGCTCCCATCACA	.	90	3	124	0	.	0	0	0	0	0	AA	5904315	CC	AA	5904314	3	1	31	1	0	0	0	0	1	0	0	0	3345	610	22	3	1538	3	CHGB	20	5904314	Missense_Mutation	DNP	CC	TCGA-OR-A5KB-01A-11D-A30A-10	319	5904314	57121206	2098	7472										
HAO1	54363	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr20	7875859	7875859	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	agccatgtttaacagcctccCtggcatcatcacctggagag	9	13	2	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	HAO1-93	NM_017545	exon5	c.G734T	p.R245M	GCCTCCCTGGCAT	.	68	17	88	0	.	0	0	0	0	0	A	7875859	C	A	7875859	3	1	31	1	0	0	0	0	1	0	0	0	6972	681	24	3	394	3	HAO1	20	7875859	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	1971545	7875859	55149661	2099	7473										
PLCB1	23236	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr20	8770166	8770166	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	attcatcatttgcttttaggGagaagacagagatgatccgg	11	6	2	4	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PLCB1-297	NM_015192	exon30	c.G3280T	p.G1094C	TTTAGGGAGAAGA	.	91	35	155	0	.	0	0	0	0	0	T	8770166	G	T	8770166	3	4	31	1	0	0	0	0	1	0	0	0	12056	1188	41	3	3398	3	PLCB1	20	8770166	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	894307	8770166	54255354	2100	7474										
PLCB4	5332	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr20	9417684	9417684	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gtgcccagtgacacttccaaAaatgacaagaaaggaaaggc	10	9	0	3	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PLCB4-274	NM_001172646	exon29	c.A2649G	p.K883K	TTCCAAAAATGAC	.	85	24	133	0	.	0	0	0	0	0	G	9417684	A	G	9417684	2	3	31	1	0	0	0	0	0	0	0	1	12059	11	1	4		4	PLCB4	20	9417684	Silent	SNP	A	TCGA-OR-A5KB-01A-11D-A30A-10	647518	9417684	53607836	2101	7475										
PAK7	57144	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr20	9543657	9543657	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	acattgtcatggtggtaatcCcgcatgatcacgacctgggg	12	10	2	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PAK7-1434	NM_177990	exon6	c.G1497T	p.R499R	GTAATCCCGCATG	.	107	32	124	1	.	0	0	0	0	0	A	9543657	C	A	9543657	2	1	31	1	0	0	0	0	0	0	0	1	11434	610	22	3		3	PAK7	20	9543657	Silent	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	125973	9543657	53481863	2102	7476										
ESF1	51575	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr20	13752040	13752040	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cacaatcctcataaattttaCtagctgtttccggagaatca	5	10	2	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ESF1-91	NM_001276380	exon6	c.G1340A	p.S447N	ATTTTACTAGCTG	.	71	14	90	0	.	0	0	0	0	0	T	13752040	C	T	13752040	3	4	31	1	0	0	0	0	1	0	0	0	5264	565	20	3	1251	3	ESF1	20	13752040	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	4208383	13752040	49273480	2103	7477										
RRBP1	6238	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr20	17617312	17617312	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gtgatctcctgctcccgggcCaccagctgctttttcacttt	8	15	2	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	RRBP1-92	NM_004587	exon6	c.G948T	p.V316V	CCGGGCCACCAGC	.	81	20	89	0	.	0	0	0	0	0	A	17617312	C	A	17617312	2	1	31	1	0	0	0	0	0	0	0	1	13713	581	21	3		3	RRBP1	20	17617312	Silent	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	3865272	17617312	45408208	2104	7478										
RALGAPA2	57186	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr20	20501596	20501596	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gcaggttacccaattctgctGatgaatgatactggactggc	11	9	1	3	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	RALGAPA2-24	NM_020343	exon31	c.C4049T	p.S1350L	TCTGCTGATGAAT	.	95	24	130	0	.	0	0	0	0	0	A	20501596	G	A	20501596	3	1	31	1	0	0	0	0	1	0	0	0	13049	1294	45	3	1608	3	RALGAPA2	20	20501596	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	2884284	20501596	42523924	2105	7479										
FOXA2	3170	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr20	22563160	22563160	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ttgcccgagtcagggtgcagGgtccagaaggagcccttgcc	15	12	1	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FOXA2-228	NM_021784	exon2	c.C720T	p.T240T	GTGCAGGGTCCAG	.	88	48	101	0	.	0	0	0	0	0	A	22563160	G	A	22563160	2	1	31	1	0	0	0	0	0	0	0	1	6009	1219	43	3		3	FOXA2	20	22563160	Silent	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	2061564	22563160	40462360	2106	7480										
CD93	22918	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr20	23065618	23065618	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	caggagcagtgaaatgagccAtctgtgttggtgcagccctg	14	9	1	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CD93-153	NM_012072	exon1	c.T1212C	p.D404D	TGAGCCATCTGTG	.	224	101	237	0	.	0	0	0	0	0	G	23065618	A	G	23065618	2	3	31	1	0	0	0	0	0	0	0	1	3053	214	8	4		4	CD93	20	23065618	Silent	SNP	A	TCGA-OR-A5KB-01A-11D-A30A-10	502458	23065618	39959902	2107	7481										
CST8	10047	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr20	23472348	23472348	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cctgatcctcctcaccattcCcctggccctggtggccagga	9	18	1	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CST8-90	NM_005492	exon2	c.C44T	p.P15L	CCATTCCCCTGGC	.	147	73	121	1	.	0	0	0	0	0	T	23472348	C	T	23472348	3	4	31	1	0	0	0	0	1	0	0	0	3984	623	22	3	46	3	CST8	20	23472348	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	406730	23472348	39553172	2108	7482										
CST8	10047	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr20	23472361	23472361	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	accattcccctggccctggtGgccaggaaagacccaaaaaa	9	14	0	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CST8-90	NM_005492	exon2	c.G57T	p.V19V	CCTGGTGGCCAGG	.	164	43	129	0	.	0	0	0	0	0	T	23472361	G	T	23472361	2	4	31	1	0	0	0	0	0	0	0	1	3984	1335	47	3		3	CST8	20	23472361	Silent	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	13	23472361	39553159	2109	7483										
CST9	128822	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr20	23584212	23584212	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gcccacaccacaccccatgcAgcatccacagctgtggacct	7	19	0	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CST9-91	NM_001008693	exon2	c.T415C	p.C139R	CCATGCAGCATCC	.	216	45	231	0	.	0	0	0	0	0	G	23584212	A	G	23584212	3	3	31	1	0	0	0	0	1	0	0	0	3985	188	7	4	68	4	CST9	20	23584212	Missense_Mutation	SNP	A	TCGA-OR-A5KB-01A-11D-A30A-10	111851	23584212	39441308	2110	7484										
BCL2L1	598	broad.mit.edu;bcgsc.ca	37	chr20	30309465	30309465	+	Frame_Shift_Del	DEL	C	C	-													0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gcttggttcttacccagccgCcgttctcctggatccaaggc					novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	BCL2L1-1084	NM_138578	exon2	c.557delG	p.G186fs	CAGCCGCCGTTCT	.	77	11	82	0	.	0	0	0	0	0	-	30309465	C	-	30309465	7	5	31	1	0	1	0	1	0	0	0	0	1368	739	26	0	152	0	BCL2L1	20	30309465	Frame_Shift_Del	DEL	C	TCGA-OR-A5KB-01A-11D-A30A-10	6725253	30309465	32716055	2111	7485										
CDK5RAP1	51654	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr20	31967333	31967333	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	atttcaggatctactctggaGacctgatccagaagatgagc	10	9	3	5	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CDK5RAP1-230	NM_016408	exon8	c.C1041G	p.V347V	TCTGGAGACCTGA	.	131	17	143	0	.	0	0	0	0	0	C	31967333	G	C	31967333	2	2	31	1	0	0	0	0	0	0	0	1	3151	929	33	3		3	CDK5RAP1	20	31967333	Silent	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	1657868	31967333	31058187	2112	7486										
PIGU	128869	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr20	33169461	33169461	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gcgatctggataaacatgaaGaagatggggtgctccctggg	15	7	1	3	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PIGU-226	NM_080476	exon10	c.C942A	p.F314L	CATGAAGAAGATG	.	134	9	133	0	.	0	0	0	0	0	T	33169461	G	T	33169461	3	4	31	1	0	0	0	0	1	0	0	0	11929	933	33	3	377	3	PIGU	20	33169461	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	1202128	33169461	29856059	2113	7487										
ACSS2	55902	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr20	33508448	33508448	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ctggtgcacggcagacattgGttggatcactggtcattcct	12	10	2	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ACSS2-226	NM_001076552	exon10	c.G1118T	p.G373V	ACATTGGTTGGAT	.	105	42	124	0	.	0	0	0	0	0	T	33508448	G	T	33508448	3	4	31	1	0	0	0	0	1	0	0	0	189	1261	44	3	1156	3	ACSS2	20	33508448	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	338987	33508448	29517072	2114	7488										
CEP250	11190	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr20	34090551	34090551	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	aggaactggagaagcaacggGaaatgcagaaggctgctttg	15	6	0	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CEP250-27	NM_007186	exon30	c.G4354T	p.E1452X	CAACGGGAAATGC	.	149	77	194	0	.	0	0	0	0	0	T	34090551	G	T	34090551	4	4	31	1	0	0	0	0	0	1	0	0	3258	1175	41	3	4460	3	CEP250	20	34090551	Nonsense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	582103	34090551	28934969	2115	7489										
RBM12	10137	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr20	34242103	34242103	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ggcctccagcagctacccacTgtctttctgtggcagggcta	11	14	2	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	RBM12-93	NM_001198840	exon2	c.A1142T	p.Q381L	ACCCACTGTCTTT	.	90	17	101	0	.	0	0	0	0	0	A	34242103	T	A	34242103	3	1	31	1	0	0	0	0	1	0	0	0	13148	1580	55	5	1660	5	RBM12	20	34242103	Missense_Mutation	SNP	T	TCGA-OR-A5KB-01A-11D-A30A-10	151552	34242103	28783417	2116	7490										
PHF20	51230	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr20	34535448	34535448	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	acactggggaactggagcccCctgagccgctggccaggctt	14	14	0	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PHF20-515	NM_016436	exon18	c.C2938T	p.P980S	GAGCCCCCTGAGC	.	112	50	90	0	.	0	0	0	0	0	T	34535448	C	T	34535448	3	4	31	1	0	0	0	0	1	0	0	0	11860	623	22	3	3004	3	PHF20	20	34535448	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	293345	34535448	28490072	2117	7491										
PPP1R16B	26051	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr20	37531363	37531363	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gtggctcctgagcagcagatGattgcggacatccactgcat	12	11	0	3	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PPP1R16B-228	NM_001172735	exon6	c.G624A	p.M208I	GCAGATGATTGCG	.	217	91	173	1	.	0	0	0	0	0	A	37531363	G	A	37531363	3	1	31	1	0	0	0	0	1	0	0	0	12398	1290	45	3	642	3	PPP1R16B	20	37531363	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	2995915	37531363	25494157	2118	7492										
MAFB	9935	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr20	39316536	39316536	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gactcacagaaagaactcggGagaggaggggctgtcgctgg	17	8	1	3	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MAFB-846	NM_005461	exon1	c.C955G	p.P319A	ACTCGGGAGAGGA	.	59	21	59	0	.	0	0	0	0	0	C	39316536	G	C	39316536	3	2	31	1	0	0	0	0	1	0	0	0	9186	1174	41	3	20	3	MAFB	20	39316536	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	1785173	39316536	23708984	2119	7493										
PTPRT	11122	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr20	40980823	40980823	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ggtggtccctgggtacagacCcacaaagaggtggtgggttt	16	8	0	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PTPRT-664	NM_007050	exon10	c.G1663T	p.G555C	ACAGACCCACAAA	.	154	66	145	2	.	0	0	0	0	0	A	40980823	C	A	40980823	3	1	31	1	0	0	0	0	1	0	0	0	12847	623	22	3	2811	3	PTPRT	20	40980823	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	1664287	40980823	22044697	2120	7494										
MYBL2	4605	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr20	42315672	42315672	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gcgaggcccacaaggtgctgGgcaaccgctgggccgagatc	16	13	0	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MYBL2-415	NM_002466	exon5	c.G460C	p.G154R	GTGCTGGGCAACC	.	118	57	87	0	.	0	0	0	0	0	C	42315672	G	C	42315672	3	2	31	1	0	0	0	0	1	0	0	0	10038	1232	43	3	478	3	MYBL2	20	42315672	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	1334849	42315672	20709848	2121	7495										
TOX2	84969	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr20	42683068	42683068	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cactcttcttcagagacactCaggccgccatcaagggtcag	9	14	6	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TOX2-91	NM_001098798	exon5	c.C808T	p.Q270X	GACACTCAGGCCG	.	174	75	170	0	.	0	0	0	0	0	T	42683068	C	T	42683068	4	4	31	1	0	0	0	0	0	1	0	0	16416	827	29	3	929	3	TOX2	20	42683068	Nonsense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	367396	42683068	20342452	2122	7496										
WISP2	8839	hgsc.bcm.edu	37	chr20	43348703	43348703	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tctgcgacgccagccagggcCtggtctgccagcccggggca	15	16	2	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	WISP2-130	NM_003881	exon2	c.C226A	p.L76M	CAGGGCCTGGTCT	.	24	14	3	0	.	0	0	0	0	0	A	43348703	C	A	43348703	3	1	31	1	0	0	0	0	1	0	0	0	17411	680	24	3	232	3	WISP2	20	43348703	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	665635	43348703	19676817	2123	7497										
RIMS4	140730	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr20	43384921	43384921	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cagggtggtcaagtccagctCctccagcagcacgcgagcca	12	15	1	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	RIMS4-94	NM_001205317	exon6	c.G667C	p.E223Q	CCAGCTCCTCCAG	.	139	63	147	0	.	0	0	0	0	0	G	43384921	C	G	43384921	3	3	31	1	0	0	0	0	1	0	0	0	13405	864	30	3	149	3	RIMS4	20	43384921	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	36218	43384921	19640599	2124	7498										
DNTTIP1	116092	hgsc.bcm.edu	37	chr20	44420682	44420682	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gccgagcagccgcggggaccTagcggggccgagaggggcgg	22	12	0	1	rs2664591	byfrequency	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DNTTIP1-91	NM_052951	exon1	c.T39C	p.P13P	GGGACCTAGCGGG	.	10	10	0	0	T|0.311;C|0.689	0	0	0	0	0	C	44420682	T	C	44420682	2	2	31	1	0	0	0	0	0	0	0	1	4692	1509	53	4		4	DNTTIP1	20	44420682	Silent	SNP	T	TCGA-OR-A5KB-01A-11D-A30A-10	1035761	44420682	18604838	2125	7499										
ZNF334	55713	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr20	45130422	45130422	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cggcatgcccatgttcactaCactcataaagattctccttt	5	13	3	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ZNF334-92	NM_018102	exon5	c.G1556T	p.C519F	TCACTACACTCAT	.	127	27	134	1	.	0	0	0	0	0	A	45130422	C	A	45130422	3	1	31	1	0	0	0	0	1	0	0	0	17888	478	17	3	490	3	ZNF334	20	45130422	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	709740	45130422	17895098	2126	7500										
SLC2A10	81031	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr20	45354555	45354555	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ccatggggctggtggaccgtGcaggccgcagggctctgttg	18	11	1	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SLC2A10-91	NM_030777	exon2	c.G880T	p.A294S	GACCGTGCAGGCC	.	167	39	149	0	.	0	0	0	0	0	T	45354555	G	T	45354555	3	4	31	1	0	0	0	0	1	0	0	0	14574	1319	46	3	886	3	SLC2A10	20	45354555	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	224133	45354555	17670965	2127	7501										
EYA2	2139	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr20	45700881	45700881	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	caacgcagccggtttcgggaGtgtgcaccaggtagacatgg	15	10	0	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	EYA2-523	NM_172110	exon6	c.G473T	p.S158I	TCGGGAGTGTGCA	.	163	29	137	1	.	0	0	0	0	0	T	45700881	G	T	45700881	3	4	31	1	0	0	0	0	1	0	0	0	5342	1029	36	3	491	3	EYA2	20	45700881	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	346326	45700881	17324639	2128	7502										
EYA2	2139	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr20	45771748	45771748	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	atgatggaagagatgatcttCaaccttgcagatacacatct	8	8	3	4	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	EYA2-523	NM_172110	exon10	c.C939A	p.F313L	GATCTTCAACCTT	.	137	65	151	0	.	0	0	0	0	0	A	45771748	C	A	45771748	3	1	31	1	0	0	0	0	1	0	0	0	5342	825	29	3	973	3	EYA2	20	45771748	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	70867	45771748	17253772	2129	7503										
ZMYND8	23613	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr20	45976616	45976616	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tcacctttggagcgagtagaGatatccatgccctctaccac	8	13	2	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ZMYND8-252	NM_183048	exon2	c.C69G	p.I23M	AGTAGAGATATCC	.	54	15	53	0	.	0	0	0	0	0	C	45976616	G	C	45976616	3	2	31	1	0	0	0	0	1	0	0	0	17748	932	33	3	3585	3	ZMYND8	20	45976616	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	204868	45976616	17048904	2130	7504										
SULF2	55959	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr20	46311853	46311853	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gccgatgtggtaaccgtggtCggcggtgtatacgatgtacg	16	8	0	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SULF2-293	NM_001161841	exon7	c.G949T	p.D317Y	CGTGGTCGGCGGT	.	279	55	212	0	.	0	0	0	0	0	A	46311853	C	A	46311853	3	1	31	1	0	0	0	0	1	0	0	0	15408	884	31	2	1723	2	SULF2	20	46311853	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	335237	46311853	16713667	2131	7505										
SULF2	55959	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr20	46385940	46385940	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ccccgaggcttacccagctcCacatcctggtcgtccgtcag	9	18	1	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SULF2-293	NM_001161841	exon2	c.G168T	p.V56V	CAGCTCCACATCC	.	73	31	62	0	.	0	0	0	0	0	A	46385940	C	A	46385940	2	1	31	1	0	0	0	0	0	0	0	1	15408	581	21	3		3	SULF2	20	46385940	Silent	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	74087	46385940	16639580	2132	7506										
PREX1	57580	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr20	47262418	47262418	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tcgcgataactcatggtgtcGtggcctgagtcctcctggtc	12	12	1	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PREX1-231	NM_020820	exon26	c.C3483G	p.H1161Q	GGTGTCGTGGCCT	.	154	65	188	1	.	0	0	0	0	0	C	47262418	G	C	47262418	3	2	31	1	0	0	0	0	1	0	0	0	12508	1136	40	2	1556	2	PREX1	20	47262418	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	876478	47262418	15763102	2133	7507										
PREX1	57580	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr20	47317415	47317415	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ctgagtgcagatgtctgtgaGgttggaaccctggaagcgca	15	8	1	3	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PREX1-231	NM_020820	exon7	c.C793A	p.L265I	CTGTGAGGTTGGA	.	127	63	102	0	.	0	0	0	0	0	T	47317415	G	T	47317415	3	4	31	1	0	0	0	0	1	0	0	0	12508	1000	35	3	4322	3	PREX1	20	47317415	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	54997	47317415	15708105	2134	7508										
B4GALT5	9334	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr20	48257052	48257052	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	caatttggttgcaaaatgccTcggcatctgtccacatccat	7	12	1	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	B4GALT5-91	NM_004776	exon6	c.A757T	p.R253W	AATGCCTCGGCAT	.	55	27	50	0	.	0	0	0	0	0	A	48257052	T	A	48257052	3	1	31	1	0	0	0	0	1	0	0	0	1275	1550	54	5	425	5	B4GALT5	20	48257052	Missense_Mutation	SNP	T	TCGA-OR-A5KB-01A-11D-A30A-10	939637	48257052	14768468	2135	7509										
SALL4	57167	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr20	50408431	50408431	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ggggcagggagtgcatccgcGctccgctgattcaccgccac	14	15	1	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SALL4-92	NM_020436	exon2	c.C591A	p.S197R	ATCCGCGCTCCGC	.	88	15	88	0	.	0	0	0	0	0	T	50408431	G	T	50408431	3	4	31	1	0	0	0	0	1	0	0	0	13848	1078	38	2	2582	2	SALL4	20	50408431	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	2151379	50408431	12617089	2136	7510										
PCK1	5105	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr20	56139391	56139391	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tgggaaggcattgatgagccGctagcttcaggtgtcaccat	13	9	2	2	rs200264001	alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PCK1-227	NM_002591	exon7	c.G1128T	p.P376P	TGAGCCGCTAGCT	.	268	54	277	0	G|0.999;A|0.000	0	0	0	0	0	T	56139391	G	T	56139391	2	4	31	1	0	0	0	0	0	0	0	1	11610	1074	38	2		2	PCK1	20	56139391	Silent	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	5730960	56139391	6886129	2137	7511										
GNAS	2778	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr20	57428374	57428374	+	Frame_Shift_Del	DEL	C	C	-													0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	atgtcaggacaacgcgatatCccccctgaaatcggggaaca					novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GNAS-4767	NM_080425	exon1	c.54delC	p.I18fs	CGATATCCCCCCT	.	111	51	147	0	.	0	0	0	0	0	-	57428374	C	-	57428374	7	5	31	1	0	1	0	1	0	0	0	0	6530	845	30	0	798	0	GNAS	20	57428374	Frame_Shift_Del	DEL	C	TCGA-OR-A5KB-01A-11D-A30A-10	1288983	57428374	5597146	2138	7512										
ZNF831	128611	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr20	57768917	57768917	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cctcctcaggttacctcaggCagagacccccttaccactgc	7	18	2	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ZNF831-126	NM_178457	exon1	c.C2843A	p.A948E	CTCAGGCAGAGAC	.	68	34	74	0	.	0	0	0	0	0	A	57768917	C	A	57768917	3	1	31	1	0	0	0	0	1	0	0	0	18222	710	25	3	2845	3	ZNF831	20	57768917	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	340543	57768917	5256603	2139	7513										
ZNF831	128611	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr20	57769069	57769069	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cagcctcaggcccctccccaGgtgaggcggacagcatcctg	12	17	1	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ZNF831-126	NM_178457	exon1	c.G2995T	p.G999C	TCCCCAGGTGAGG	.	34	13	32	0	.	0	0	0	0	0	T	57769069	G	T	57769069	3	4	31	1	0	0	0	0	1	0	0	0	18222	1000	35	3	2997	3	ZNF831	20	57769069	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	152	57769069	5256451	2140	7514										
ZNF831	128611	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr20	57769218	57769218	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	atctcagcaccaggggctccCagggaggctacctcctcccc	10	18	1	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ZNF831-126	NM_178457	exon1	c.C3144A	p.P1048P	GGCTCCCAGGGAG	.	93	20	66	0	.	0	0	0	0	0	A	57769218	C	A	57769218	2	1	31	1	0	0	0	0	0	0	0	1	18222	581	21	3		3	ZNF831	20	57769218	Silent	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	149	57769218	5256302	2141	7515										
ZNF831	128611	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr20	57828115	57828115	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gaagagaagaaggaaggtgaCtgcagacaaaccttaggaac	13	6	0	4	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ZNF831-126	NM_178457	exon4	c.C4110A	p.D1370E	AGGTGACTGCAGA	.	187	89	146	1	.	0	0	0	0	0	A	57828115	C	A	57828115	3	1	31	1	0	0	0	0	1	0	0	0	18222	564	20	3	4124	3	ZNF831	20	57828115	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	58897	57828115	5197405	2142	7516										
ZNF831	128611	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr20	57829495	57829495	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gcttcaggaccaagttcagcTagttcacaccacaaggaagg	10	11	3	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ZNF831-126	NM_178457	exon5	c.T4731A	p.A1577A	TTCAGCTAGTTCA	.	211	86	229	0	.	0	0	0	0	0	A	57829495	T	A	57829495	2	1	31	1	0	0	0	0	0	0	0	1	18222	1509	53	5		5	ZNF831	20	57829495	Silent	SNP	T	TCGA-OR-A5KB-01A-11D-A30A-10	1380	57829495	5196025	2143	7517										
PHACTR3	116154	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr20	58349336	58349336	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	taaagggtctccaaagaagcGgctggatgtccgtctgtcga	13	9	2	1	rs143127476	alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PHACTR3-93	NM_080672	exon7	c.G965T	p.R322L	AGAAGCGGCTGGA	.	117	27	124	0	G|0.999;A|0.000	0	0	0	0	0	T	58349336	G	T	58349336	3	4	31	1	0	0	0	0	1	0	0	0	11840	1116	39	2	991	2	PHACTR3	20	58349336	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	519841	58349336	4676184	2144	7518										
CDH4	1002	broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr20	60448951	60448951	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cagtggcggctggcctggacCgagaggtgaggcggggtggg	23	8	0	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CDH4-282	NM_001794	exon7	c.C1045A	p.R349R	CTGGACCGAGAGG	.	150	40	102	1	.	0	0	0	0	0	A	60448951	C	A	60448951	2	1	31	1	0	0	0	0	0	0	0	1	3118	644	23	2		2	CDH4	20	60448951	Silent	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	2099615	60448951	2576569	2145	7519										
TAF4	6874	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr20	60581714	60581714	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tcagcaccacggccgtgagcGcagtggtggcctgcgaggtg	17	12	1	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TAF4-93	NM_003185	exon7	c.C2075T	p.A692V	GTGAGCGCAGTGG	.	175	42	19	0	.	0	0	0	0	0	A	60581714	G	A	60581714	3	1	31	1	0	0	0	0	1	0	0	0	15563	1087	38	1	1218	1	TAF4	20	60581714	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	132763	60581714	2443806	2146	7520										
LAMA5	3911	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr20	60913072	60913072	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tgccctgaccctctgctcacCttggcagttggggaaaccat	10	14	2	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	LAMA5-93	NM_005560	exon14	c.G1891T	p.A631S	GCTCACCTTGGCA	.	236	119	116	0	.	0	0	0	0	0	A	60913072	C	A	60913072	3	1	31	1	0	0	0	0	1	0	0	0	8631	695	24	3	9464	3	LAMA5	20	60913072	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	331358	60913072	2112448	2147	7521										
OGFR	11054	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr20	61444261	61444261	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ggacggggacccaggaagtgGgcggtcaggaccctggggag	21	9	1	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OGFR-68	NM_007346	exon7	c.G1294T	p.G432C	GAAGTGGGCGGTC	.	123	32	56	0	.	0	0	0	0	0	T	61444261	G	T	61444261	3	4	31	1	0	0	0	0	1	0	0	0	10872	1232	43	3	1320	3	OGFR	20	61444261	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	531189	61444261	1581259	2148	7522										
DIDO1	11083	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr20	61512594	61512594	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gagaggctccccctccccctCaccggtctcagtggccaggc	11	19	2	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DIDO1-96	NM_001193369	exon16	c.G4714T	p.E1572X	CCCCCTCACCGGT	.	42	9	18	0	.	0	0	0	0	0	A	61512594	C	A	61512594	4	1	31	1	0	0	0	0	0	1	0	0	4533	835	29	3	2012	3	DIDO1	20	61512594	Nonsense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	68333	61512594	1512926	2149	7523										
YTHDF1	54915	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr20	61834292	61834292	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ctgcccaaacgccgcgtttcTgttgcgtggggcaacccagc	12	15	1	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	YTHDF1-92	NM_017798	exon4	c.A1000G	p.R334G	CGTTTCTGTTGCG	.	72	21	62	0	.	0	0	0	0	0	C	61834292	T	C	61834292	3	2	31	1	0	0	0	0	1	0	0	0	17536	1588	55	4	687	4	YTHDF1	20	61834292	Missense_Mutation	SNP	T	TCGA-OR-A5KB-01A-11D-A30A-10	321698	61834292	1191228	2150	7524										
BIRC7	79444	broad.mit.edu	37	chr20	61869765	61869765	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cagctgtcagttcctgctccGgtcaaaaggaagagactttg	11	10	2	1	rs199795769	alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	BIRC7-659	NM_139317	exon3	c.G467T	p.R156L	TGCTCCGGTCAAA	.	46	10	38	1	.	0	0	0	0	0	T	61869765	G	T	61869765	3	4	31	1	0	0	0	0	1	0	0	0	1440	1116	39	2	477	2	BIRC7	20	61869765	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	35473	61869765	1155755	2151	7525										
BIRC7	79444	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr20	61869820	61869820	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gagactcactcccagctgctGggctcctgggtgagcgccac	13	15	1	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	BIRC7-659	NM_139317	exon3	c.G522T	p.L174L	GCTGCTGGGCTCC	.	88	42	72	0	.	0	0	0	0	0	T	61869820	G	T	61869820	2	4	31	1	0	0	0	0	0	0	0	1	1440	1335	47	3		3	BIRC7	20	61869820	Silent	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	55	61869820	1155700	2152	7526										
ARFGAP1	55738	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr20	61919061	61919061	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gcgacagctggacgtgcgcgGacacctccaccgagaggagg	16	13	0	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ARFGAP1-91	NM_175609	exon14	c.G1081A	p.D361N	TGCGCGGACACCT	.	167	39	125	0	.	0	0	0	0	0	A	61919061	G	A	61919061	3	1	31	1	0	0	0	0	1	0	0	0	849	1174	41	3	1137	3	ARFGAP1	20	61919061	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	49241	61919061	1106459	2153	7527										
TPTE	7179	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr21	10920084	10920084	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tttttaaaaagaaaacttacCtgagaaggagtttttactcc	6	6	0	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TPTE-344	NM_199261	exon19	c.G1170T	p.Q390H	ACTTACCTGAGAA	.	19	7	36	0	.	0	0	0	0	0	A	10920084	C	A	10920084	3	1	31	1	0	0	0	0	1	0	0	0	16468	695	24	3	509	3	TPTE	21	10920084	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10		10920084	37209811	2154	7528										
TPTE	7179	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr21	10944670	10944670	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	aagtcttatgtttcatacctGggaatattcctaagcaactt	6	8	2	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TPTE-344	NM_199261	exon11	c.C564A	p.P188P	ATACCTGGGAATA	.	304	29	359	0	.	0	0	0	0	0	T	10944670	G	T	10944670	2	4	31	1	0	0	0	0	0	0	0	1	16468	1335	47	3		3	TPTE	21	10944670	Silent	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	24586	10944670	37185225	2155	7529										
BAGE2	85319	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr21	11058188	11058188	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	aggagcttggtcaatgtgttCtggacaaagcaggaagatgt	14	5	2	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_182482	exon3	c.G252T	p.Q84H	TGTGTTCTGGACA	.	220	22	249	0	.	0	0	0	0	0	A	11058188	C	A	11058188	3	1	31	1	0	0	0	0	1	0	0	0	1293	912	32	3	85	3	BAGE2	21	11058188	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	113518	11058188	37071707	2156	7530										
TMPRSS15	5651	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr21	19666953	19666954	+	Missense_Mutation	DNP	CC	CC	AT													0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ctgtaaccgaatcaaggaatCctgtaaacactgttgactgt					novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	CC	CC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TMPRSS15-160	NM_002772	exon20	c.G2277A	p.D760Y	GGAATCCTGTAAA	.	227	0	277	0	.	0	0	0	0	0	AT	19666954	CC	AT	19666953	3	1	31	1	0	0	0	0	1	0	0	0	16283	855	30	3	805	3	TMPRSS15	21	19666953	Missense_Mutation	DNP	CC	TCGA-OR-A5KB-01A-11D-A30A-10	8608765	19666953	28462942	2157	7531										
GRIK1	2897	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr21	31311813	31311813	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tgggcgaggagtgtgccgtgCtccatcttcctagcttctta	12	11	2	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GRIK1-137	NM_175611	exon1	c.G6C	p.E2D	GCCGTGCTCCATC	.	99	69	79	0	.	0	0	0	0	0	G	31311813	C	G	31311813	3	3	31	1	0	0	0	0	1	0	0	0	6794	796	28	3	2978	3	GRIK1	21	31311813	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	11644860	31311813	16818082	2158	7532										
KRTAP24-1	643803	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr21	31655215	31655215	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gatgtggtactgcagacaccAggatagcctgtagtagacat	12	8	0	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	KRTAP24-1-68	NM_001085455	exon1	c.T36A	p.P12P	GACACCAGGATAG	.	276	181	219	2	.	0	0	0	0	0	T	31655215	A	T	31655215	2	4	31	1	0	0	0	0	0	0	0	1	8564	175	7	5		5	KRTAP24-1	21	31655215	Silent	SNP	A	TCGA-OR-A5KB-01A-11D-A30A-10	343402	31655215	16474680	2159	7533										
KRTAP13-3	337960	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr21	31797786	31797786	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tctaggtggaaaatagattgGatggcagaatctggatctat	12	4	3	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	KRTAP13-3-92	NM_181622	exon1	c.C445G	p.P149A	AGATTGGATGGCA	.	111	83	116	0	.	0	0	0	0	0	C	31797786	G	C	31797786	3	2	31	1	0	0	0	0	1	0	0	0	8545	1174	41	3	77	3	KRTAP13-3	21	31797786	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	142571	31797786	16332109	2160	7534										
KRTAP15-1	254950	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr21	31812927	31812928	+	Missense_Mutation	DNP	CC	CC	AA													0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cagactaactacataagatcCcttggatgtggaaacactgg					novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	CC	CC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	KRTAP15-1-90	NM_181623	exon1	c.C283A	p.L95I	AGATCCCTTGGAT	.	119	35	107	0	.	0	0	0	0	0	AA	31812928	CC	AA	31812927	3	1	31	1	0	0	0	0	1	0	0	0	8547	610	22	3	284	3	KRTAP15-1	21	31812927	Missense_Mutation	DNP	CC	TCGA-OR-A5KB-01A-11D-A30A-10	15141	31812927	16316968	2161	7535										
KRTAP11-1	337880	ucsc.edu;bcgsc.ca	37	chr21	32253540	32253540	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	agagacaaaggtgagcggccGgctgtaggtagttgagcagg	18	6	0	3	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	KRTAP11-1-91	NM_175858	exon1	c.C304A	p.R102R	GCGGCCGGCTGTA	.	363	261	289	3	.	0	0	0	0	0	T	32253540	G	T	32253540	2	4	31	1	0	0	0	0	0	0	0	1	8538	1115	39	2		2	KRTAP11-1	21	32253540	Silent	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	440613	32253540	15876355	2162	7536										
DSCR6	53820	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr21	38385914	38385914	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cctttgggtttcagcatcctGtaaggtaatatacgacttca	8	9	2	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DSCR6-153	NM_018962	exon3	c.G235T	p.V79L	CATCCTGTAAGGT	.	109	81	85	0	.	0	0	0	0	0	T	38385914	G	T	38385914	3	4	31	1	0	0	0	0	1	0	0	0	4784	1377	48	3	245	3	DSCR6	21	38385914	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	6132374	38385914	9743981	2163	7537										
DSCAM	1826	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr21	41719682	41719682	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gcgcccccgtcacttttgacCatgtgatccattataaggtt	8	12	1	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DSCAM-101	NM_001271534	exon6	c.G1125T	p.M375I	TTTGACCATGTGA	.	152	115	158	0	.	0	0	0	0	0	A	41719682	C	A	41719682	3	1	31	1	0	0	0	0	1	0	0	0	4779	594	21	3	5025	3	DSCAM	21	41719682	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	3333768	41719682	6410213	2164	7538										
WDR4	10785	bcgsc.ca	37	chr21	44296862	44296862	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gcactgcagtcatagatgaaGaggctgtcatcatcactaaa	9	9	4	3	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	WDR4-91	NM_018669	exon2	c.C105G	p.L35L	GATGAAGAGGCTG	.	28	19	35	1	.	0	0	0	0	0	C	44296862	G	C	44296862	2	2	31	1	0	0	0	0	0	0	0	1	17331	929	33	3		3	WDR4	21	44296862	Silent	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	2577180	44296862	3833033	2165	7539										
TRPM2	7226	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr21	45795727	45795727	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ccatcccagggcagcttcccCgccgagtacatactggatga	10	15	0	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TRPM2-92	NM_003307	exon6	c.C783T	p.P261P	CTTCCCCGCCGAG	.	161	120	133	0	.	0	0	0	0	0	T	45795727	C	T	45795727	2	4	31	1	0	0	0	0	0	0	0	1	16624	639	23	1		1	TRPM2	21	45795727	Silent	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	1498865	45795727	2334168	2166	7540										
TRPM2	7226	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr21	45845667	45845667	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cctcctctaccccaactgccCtgtcacgcgcttccccgtgc	6	22	2	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TRPM2-92	NM_003307	exon25	c.C3752A	p.P1251H	ACTGCCCTGTCAC	.	259	171	108	0	.	0	0	0	0	0	A	45845667	C	A	45845667	3	1	31	1	0	0	0	0	1	0	0	0	16624	681	24	3	3850	3	TRPM2	21	45845667	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	49940	45845667	2284228	2167	7541										
KRTAP10-9	386676	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr21	46047799	46047799	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gtgtccctcctctgccgcccTgtgtgcaggcccgcctgctg	12	18	1	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_198690	exon1	c.T711G	p.P237P	CCGCCCTGTGTGC	.	189	144	97	0	.	0	0	0	0	0	G	46047799	T	G	46047799	2	3	31	1	0	0	0	0	0	0	0	1	8537	1567	55	5		5	KRTAP10-9	21	46047799	Silent	SNP	T	TCGA-OR-A5KB-01A-11D-A30A-10	202132	46047799	2082096	2168	7542										
COL6A1	1291	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr21	47423043	47423043	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ctcttttacagacaagaagtGtccagattacacctgcccca	6	13	1	3	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	COL6A1-91	NM_001848	exon34	c.G2444T	p.C815F	AGAAGTGTCCAGA	.	184	125	121	0	.	0	0	0	0	0	T	47423043	G	T	47423043	3	4	31	1	0	0	0	0	1	0	0	0	3705	1377	48	3	2578	3	COL6A1	21	47423043	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	1375244	47423043	706852	2169	7543										
CLTCL1	8218	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr22	19220842	19220842	+	Splice_Site	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	agctcctctgagcactccagCtgtggtatgccaagggacaa	11	12	1	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CLTCL1-230	NM_001835	exon10	c.1369-1G>T	.	CTCCAGCTGTGGT	.	89	68	81	1	.	0	0	0	0	0	A	19220842	C	A	19220842	5	1	31	1	0	0	0	0	0	0	1	0	3573	811	28	3	3650	3	CLTCL1	22	19220842	Splice_Site	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10		19220842	32083724	2170	7544										
LZTR1	8216	broad.mit.edu	37	chr22	21343966	21344002	+	In_Frame_Del	DEL	GAGGAGGTGAGGGGCGTGGGGAGCCAGGGCGCAGGTA	GAGGAGGTGAGGGGCGTGGGGAGCCAGGGCGCAGGTA	-													0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	accgagagctcacctgctggGaggaggtgaggggcgtgggg					novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	LZTR1-280	NM_006767	exon7	c.646_651del	p.216_217del	TGCTGGGAGGAGG	.	43	9	41	0	.	0	0	0	0	0	-	21344002	GAGGAGGTGAGGGGCGTGGGGAGCCAGGGCGCAGGTA	-	21343966	7	5	31	1	0	1	0	1	0	0	0	0	9165	1175	41	0	672	0	LZTR1	22	21343966	In_Frame_Del	DEL	GAGGAGGTGAGGGGCGTGGGGAGCCAGGGCGCAGGTA	TCGA-OR-A5KB-01A-11D-A30A-10	2123124	21343966	29960600	2171	7545										
PRAME	23532	ucsc.edu;bcgsc.ca	37	chr22	22890510	22890510	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tagttaggcatgaaacagggGcacaggatgggctccgggtc	16	8	0	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PRAME-515	NM_206954	exon6	c.C1509A	p.C503X	ACAGGGGCACAGG	.	122	79	126	2	.	0	0	0	0	0	T	22890510	G	T	22890510	4	4	31	1	0	0	0	0	0	1	0	0	12456	1195	42	3	24	3	PRAME	22	22890510	Nonsense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	1546544	22890510	28414056	2172	7546										
PRAME	23532	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr22	22890729	22890729	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gtcagattgctcagcccgatGaggtgctgcaggagactctg	14	10	3	3	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PRAME-515	NM_206954	exon6	c.C1290A	p.L430L	CCCGATGAGGTGC	.	70	40	50	0	.	0	0	0	0	0	T	22890729	G	T	22890729	2	4	31	1	0	0	0	0	0	0	0	1	12456	1277	45	3		3	PRAME	22	22890729	Silent	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	219	22890729	28413837	2173	7547										
MYO18B	84700	ucsc.edu;bcgsc.ca	37	chr22	26164759	26164759	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ggagcagagcccacaaacacGgtggaaaaggggaatgtctc	14	9	1	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MYO18B-142	NM_032608	exon4	c.G876T	p.T292T	AAACACGGTGGAA	.	146	92	161	3	.	0	0	0	0	0	T	26164759	G	T	26164759	2	4	31	1	0	0	0	0	0	0	0	1	10094	1103	39	2		2	MYO18B	22	26164759	Silent	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	3274030	26164759	25139807	2174	7548										
MYO18B	84700	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr22	26422797	26422797	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	catttaccagacgactggggCctccacactaaggaggggca	12	12	0	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MYO18B-142	NM_032608	exon43	c.C6857A	p.A2286D	CTGGGGCCTCCAC	.	101	68	130	1	.	0	0	0	0	0	A	26422797	C	A	26422797	3	1	31	1	0	0	0	0	1	0	0	0	10094	739	26	3	7023	3	MYO18B	22	26422797	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	258038	26422797	24881769	2175	7549										
SEZ6L	23544	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr22	26761520	26761520	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cccactggaacgggcccctgCccgtgtgtaaaggtaaagaa	12	12	0	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SEZ6L-95	NM_021115	exon13	c.C2782G	p.P928A	CCCCTGCCCGTGT	.	117	81	93	1	.	0	0	0	0	0	G	26761520	C	G	26761520	3	3	31	1	0	0	0	0	1	0	0	0	14178	739	26	3	2832	3	SEZ6L	22	26761520	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	338723	26761520	24543046	2176	7550										
MN1	4330	hgsc.bcm.edu	37	chr22	28196123	28196123	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	caggcctccggctgcgccgcCgtagccgagcaggcgacccc	14	19	0	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MN1-993	NM_002430	exon1	c.G409T	p.G137C	CGCCGCCGTAGCC	.	13	11	1	0	.	0	0	0	0	0	A	28196123	C	A	28196123	3	1	31	1	0	0	0	0	1	0	0	0	9701	652	23	2	3561	2	MN1	22	28196123	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	1434603	28196123	23108443	2177	7551										
AP1B1	162	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr22	29745300	29745300	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tactcgcccacaatccagatCatggcagcccgggcctcagg	10	16	2	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	AP1B1-92	NM_001127	exon11	c.G1344T	p.M448I	CCAGATCATGGCA	.	73	47	103	0	.	0	0	0	0	0	A	29745300	C	A	29745300	3	1	31	1	0	0	0	0	1	0	0	0	731	826	29	3	1557	3	AP1B1	22	29745300	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	1549177	29745300	21559266	2178	7552										
NEFH	4744	broad.mit.edu	37	chr22	29885622	29885623	+	In_Frame_Ins	INS	-	-	AGGAAG													0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	agaggccaagtcccctgagaINSaggccaagtccccagtgaag					novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	NEFH-90	NM_021076	exon4	c.1993_1994insAGGAAG	p.K665delinsKEE	CCTGAGAAGGCCA	.	391	10	367	0	.	0	0	0	0	0	AGGAAG	29885623	-	AGGAAG	29885622	7	5	31	1	0	1	1	0	0	0	0	0	10343	247	9	0	2007	0	NEFH	22	29885622	In_Frame_Ins	INS	-	TCGA-OR-A5KB-01A-11D-A30A-10	140322	29885622	21418944	2179	7553										
C22orf42	150297	ucsc.edu;bcgsc.ca	37	chr22	32547007	32547007	+	Splice_Site	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tgcttggcctcagatatttcCtgcagtaagagaaaagaaaa	9	7	1	3	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	C22orf42-92	NM_001010859	exon7	c.466-1G>C	.	TATTTCCTGCAGT	.	270	185	317	2	.	0	0	0	0	0	G	32547007	C	G	32547007	5	3	31	1	0	0	0	0	0	0	1	0	2155	695	24	3	306	3	C22orf42	22	32547007	Splice_Site	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	2661385	32547007	18757559	2180	7554										
LARGE	9215	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr22	33712075	33712075	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	aggccgtctgccatacctgtCcatggacagctgagcgacca	11	14	1	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	LARGE-92	NM_004737	exon12	c.G1447T	p.D483Y	ACCTGTCCATGGA	.	187	127	186	1	.	0	0	0	0	0	A	33712075	C	A	33712075	3	1	31	1	0	0	0	0	1	0	0	0	8649	855	30	3	843	3	LARGE	22	33712075	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	1165068	33712075	17592491	2181	7555										
TMPRSS6	164656	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr22	37465237	37465237	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	accaccgggtggtcgagctgCagcagcgccacgtcgtagtc	14	14	0	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TMPRSS6-292	NM_153609	exon16	c.G2016A	p.L672L	GAGCTGCAGCAGC	.	139	78	57	0	.	0	0	0	0	0	T	37465237	C	T	37465237	2	4	31	1	0	0	0	0	0	0	0	1	16288	697	25	3		3	TMPRSS6	22	37465237	Silent	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	3753162	37465237	13839329	2182	7556										
SSTR3	6753	hgsc.bcm.edu	37	chr22	37603296	37603296	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gctcatgccgcggggcactcCcgagaagaccaccacgggca	13	16	1	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SSTR3-522	NM_001051	exon2	c.G547A	p.G183R	GCACTCCCGAGAA	.	53	16	0	0	.	0	0	0	0	0	T	37603296	C	T	37603296	3	4	31	1	0	0	0	0	1	0	0	0	15236	632	22	3	713	3	SSTR3	22	37603296	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	138059	37603296	13701270	2183	7557										
SH3BP1	23616	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr22	38043305	38043305	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tcctatctgcgggagctgccAgagcctctgatgaccttcga	11	13	2	3	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SH3BP1-90	NM_018957	exon12	c.A1068G	p.P356P	GCTGCCAGAGCCT	.	98	41	100	0	.	0	0	0	0	0	G	38043305	A	G	38043305	2	3	31	1	0	0	0	0	0	0	0	1	14279	175	7	4		4	SH3BP1	22	38043305	Silent	SNP	A	TCGA-OR-A5KB-01A-11D-A30A-10	440009	38043305	13261261	2184	7558										
APOBEC3F	200316	bcgsc.ca	37	chr22	39440149	39440149	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tagcccctttggccagtgcgCcccaccacatgggacagcgc	11	17	0	0	rs5750728	byfrequency	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	APOBEC3F-226	NM_001006666	exon3	c.C233T	p.A78V	AGTGCGCCCCACC	.	182	7	174	0	C|0.534;T|0.466	0	0	0	0	0	T	39440149	C	T	39440149	3	4	31	1	0	0	0	0	1	0	0	0	793	739	26	3	243	3	APOBEC3F	22	39440149	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	1396844	39440149	11864417	2185	7559										
FAM83F	113828	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr22	40417793	40417793	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gccgaaacggcatgggagaaGcggcccggggggaggccgcc	20	12	0	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FAM83F-153	NM_138435	exon4	c.G1279A	p.A427T	GGAGAAGCGGCCC	.	154	37	88	0	.	0	0	0	0	0	A	40417793	G	A	40417793	3	1	31	1	0	0	0	0	1	0	0	0	5657	971	34	3	1293	3	FAM83F	22	40417793	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	977644	40417793	10886773	2186	7560										
XPNPEP3	63929	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr22	41278040	41278040	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	aattaccatcacacaaagccAtactttttgtgcctcggcga	6	12	1	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	XPNPEP3-68	NM_022098	exon3	c.A448T	p.I150L	AAAGCCATACTTT	.	108	49	127	1	.	0	0	0	0	0	T	41278040	A	T	41278040	3	4	31	1	0	0	0	0	1	0	0	0	17482	217	8	5	458	5	XPNPEP3	22	41278040	Missense_Mutation	SNP	A	TCGA-OR-A5KB-01A-11D-A30A-10	860247	41278040	10026526	2187	7561										
ZC3H7B	23264	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr22	41723297	41723297	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cgttgttccgcaaggcacgcGctctcaatgaactgggacgc	12	13	1	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ZC3H7B-90	NM_017590	exon5	c.G373C	p.A125P	GCACGCGCTCTCA	.	135	34	96	1	.	0	0	0	0	0	C	41723297	G	C	41723297	3	2	31	1	0	0	0	0	1	0	0	0	17610	1087	38	2	387	2	ZC3H7B	22	41723297	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	445257	41723297	9581269	2188	7562										
MEI1	150365	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr22	42114182	42114182	+	Nonsense_Mutation	SNP	G	G	T													0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	actcctcaccagtggcagctGagatgctttcaggacacttc					novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MEI1-70	NM_152513	exon6	c.G637T	p.E213X	GCAGCTGAGATGC	.	94	16	86	0	.	0	0	0	0	0	T	42114182	G	T	42114182	4	4	31	1	0	0	0	0	0	1	0	0	9493	1291	45	3	659	3	MEI1	22	42114182	Nonsense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	390885	42114182	9190384	2189	7563	79	2								
MEI1	150365	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr22	42114184	42114184	+	Silent	SNP	G	G	A													0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tcctcaccagtggcagctgaGatgctttcaggacacttccg					novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MEI1-70	NM_152513	exon6	c.G639A	p.E213E	AGCTGAGATGCTT	.	96	17	86	0	.	0	0	0	0	0	A	42114184	G	A	42114184	2	1	31	1	0	0	0	0	0	0	0	1	9493	933	33	3		3	MEI1	22	42114184	Silent	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	2	42114184	9190382	2190	7564	79	2								
NFAM1	150372	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr22	42781209	42781209	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ttaagttcgccatcatcttcGaatctatgcggtctctcctg	7	12	4	0	rs200124807	alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	NFAM1-90	NM_145912	exon6	c.C771A	p.F257L	ATCTTCGAATCTA	.	63	32	76	0	G|1.000;A|0.000	0	0	0	0	0	T	42781209	G	T	42781209	3	4	31	1	0	0	0	0	1	0	0	0	10387	1049	37	2	45	2	NFAM1	22	42781209	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	667025	42781209	8523357	2191	7565										
SCUBE1	80274	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr22	43610215	43610215	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ctggcatacatgacacacacTggccgagctcaccaccgaag	9	15	1	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SCUBE1-93	NM_173050	exon16	c.A1934T	p.Q645L	ACACACTGGCCGA	.	211	94	194	0	.	0	0	0	0	0	A	43610215	T	A	43610215	3	1	31	1	0	0	0	0	1	0	0	0	13979	1580	55	5	1060	5	SCUBE1	22	43610215	Missense_Mutation	SNP	T	TCGA-OR-A5KB-01A-11D-A30A-10	829006	43610215	7694351	2192	7566										
EFCAB6	64800	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr22	44151684	44151684	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ttcaagttctcttaatgtgcGgcagcaattcatttcattcc	6	10	4	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	EFCAB6-97	NM_022785	exon6	c.C469T	p.R157C	ATGTGCGGCAGCA	.	33	17	48	0	.	0	0	0	0	0	A	44151684	G	A	44151684	3	1	31	1	0	0	0	0	1	0	0	0	4950	1116	39	1	4144	1	EFCAB6	22	44151684	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	541469	44151684	7152882	2193	7567										
EFCAB6	64800	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr22	44161245	44161245	+	Missense_Mutation	SNP	G	G	A													0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tggacagaaaggcaaggtacGgtacagtaccagaggtgcta					rs139001785		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	EFCAB6-97	NM_022785	exon5	c.C380T	p.P127L	AGGTACGGTACAG	.	189	73	203	0	G|0.999;A|0.000	0	0	0	0	0	A	44161245	G	A	44161245	3	1	31	1	0	0	0	0	1	0	0	0	4950	1116	39	1	4237	1	EFCAB6	22	44161245	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	9561	44161245	7143321	2194	7568	80	2								
EFCAB6	64800	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr22	44161247	44161247	+	Silent	SNP	T	T	A													0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gacagaaaggcaaggtacggTacagtaccagaggtgctaag					novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	EFCAB6-97	NM_022785	exon5	c.A378T	p.V126V	GTACGGTACAGTA	.	189	74	201	1	.	0	0	0	0	0	A	44161247	T	A	44161247	2	1	31	1	0	0	0	0	0	0	0	1	4950	1625	57	5		5	EFCAB6	22	44161247	Silent	SNP	T	TCGA-OR-A5KB-01A-11D-A30A-10	2	44161247	7143319	2195	7569	80	2								
PARVG	64098	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr22	44602230	44602230	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ggatgccaagagcacactgaGggtgctctatggtctgttct	13	9	3	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PARVG-90	NM_001137606	exon14	c.G920T	p.R307M	CACTGAGGGTGCT	.	278	117	182	0	.	0	0	0	0	0	T	44602230	G	T	44602230	3	4	31	1	0	0	0	0	1	0	0	0	11499	1000	35	3	966	3	PARVG	22	44602230	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	440983	44602230	6702336	2196	7570										
UPK3A	7380	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr22	45691536	45691536	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ggcctcggagtcttcctacaCgtccgtgaaccgggggccgc	14	15	1	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	UPK3A-90	NM_006953	exon6	c.C800A	p.T267K	CCTACACGTCCGT	.	72	25	55	0	.	0	0	0	0	0	A	45691536	C	A	45691536	3	1	31	1	0	0	0	0	1	0	0	0	17048	536	19	2	822	2	UPK3A	22	45691536	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	1089306	45691536	5613030	2197	7571										
RIBC2	26150	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr22	45822021	45822021	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ggagcagctggagcagatccGcctagtccagaagcagcaaa	13	11	0	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	RIBC2-90	.	.	.	.	AGATCCGCCTAGT	.	66	31	77	0	.	0	0	0	0	0	T	45822021	G	T	45822021	3	4	31	1	0	0	0	0	1	0	0	0	13388	1087	38	2	871	2	RIBC2	22	45822021	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	130485	45822021	5482545	2198	7572										
GTSE1	51512	broad.mit.edu	37	chr22	46712004	46712004	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	catcagcaagtcaggcagaaTgggacccgccatgctgcggc	13	13	2	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GTSE1-187	NM_016426	exon7	c.T1127G	p.M376R	GCAGAATGGGACC	.	108	9	114	11	.	0	0	0	0	0	G	46712004	T	G	46712004	3	3	31	1	0	0	0	0	1	0	0	0	6906	1464	51	5	1149	5	GTSE1	22	46712004	Missense_Mutation	SNP	T	TCGA-OR-A5KB-01A-11D-A30A-10	889983	46712004	4592562	2199	7573										
CELSR1	9620	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr22	46835306	46835306	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ggcatccacctcacagtgctCtcctggggggcgagaggaag	15	12	2	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CELSR1-525	NM_014246	exon3	c.G4186A	p.E1396K	AGTGCTCTCCTGG	.	84	18	54	0	.	0	0	0	0	0	T	46835306	C	T	46835306	3	4	31	1	0	0	0	0	1	0	0	0	3227	922	32	3	4990	3	CELSR1	22	46835306	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	123302	46835306	4469260	2200	7574										
PLXNB2	23654	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr22	50714236	50714236	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cctcctccaaggcattgatgAtctgagggagggtcgcatca	12	11	2	3	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PLXNB2-211	NM_012401	exon37	c.T5414A	p.I1805N	TTGATGATCTGAG	.	119	51	87	1	.	0	0	0	0	0	T	50714236	A	T	50714236	3	4	31	1	0	0	0	0	1	0	0	0	12153	347	12	5	106	5	PLXNB2	22	50714236	Missense_Mutation	SNP	A	TCGA-OR-A5KB-01A-11D-A30A-10	3878930	50714236	590330	2201	7575										
ARSA	410	broad.mit.edu;bcgsc.ca	37	chr22	51065667	51065667	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gcaggaaggccccctcaggcCccaccccaaggtgccacttg	11	18	1	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ARSA-92	NM_001085426	exon3	c.G392T	p.G131V	TCAGGCCCCACCC	.	87	43	46	1	.	0	0	0	0	0	A	51065667	C	A	51065667	3	1	31	1	0	0	0	0	1	0	0	0	988	623	22	3	1165	3	ARSA	22	51065667	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	351431	51065667	238899	2202	7576										
ACR	49	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr22	51183082	51183082	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tctgtgtccttctggacaggGagacagcggcgggcctctca	14	12	3	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ACR-90	NM_001097	exon5	c.G713A	p.G238E	GACAGGGAGACAG	.	232	55	186	0	.	0	0	0	0	0	A	51183082	G	A	51183082	3	1	31	1	0	0	0	0	1	0	0	0	169	1188	41	3	731	3	ACR	22	51183082	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	117415	51183082	121484	2203	7577										
PPP2R3B	28227	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	322316	322316	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gggcagaggctcttctttccGtgtctgaacctgaagagtcg	13	10	3	4	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PPP2R3B-136	NM_013239	exon2	c.C334T	p.R112W	CTTTCCGTGTCTG	.	278	154	312	1	.	0	0	0	0	0	A	322316	G	A	322316	3	1	31	1	0	0	0	0	1	0	0	0	12421	1144	40	1	1441	1	PPP2R3B	23	322316	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10		322316	154948244	2204	7578										
ASMTL	8623	hgsc.bcm.edu	37	chrX	1571720	1571720	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gcagcagcttcccaatcaccGggcacagcaccatggcgtcc	10	17	1	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ASMTL-62	NM_001173474	exon1	c.C14T	p.P5L	ATCACCGGGCACA	.	48	28	6	0	.	0	0	0	0	0	A	1571720	G	A	1571720	3	1	31	1	0	0	0	0	1	0	0	0	1047	1116	39	1	1903	1	ASMTL	23	1571720	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	1249404	1571720	153698840	2205	7579										
CD99	4267	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	2637737	2637737	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	taggagatgctgttgttgatGgagaaaatggtgagtatttt	14	1	0	4	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CD99-40	NM_002414	exon4	c.G184T	p.G62X	GTTGATGGAGAAA	.	413	222	537	2	.	0	0	0	0	0	T	2637737	G	T	2637737	4	4	31	1	0	0	0	0	0	1	0	0	3056	1349	47	3	198	3	CD99	23	2637737	Nonsense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	1066017	2637737	152632823	2206	7580										
MXRA5	25878	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	3229122	3229122	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	aaccaagtcaccttgggcatGggttctcctttggcctcaca	9	13	3	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MXRA5-136	NM_015419	exon7	c.C7122T	p.P2374P	GGGCATGGGTTCT	.	157	74	192	1	.	0	0	0	0	0	A	3229122	G	A	3229122	2	1	31	1	0	0	0	0	0	0	0	1	10031	1335	47	3		3	MXRA5	23	3229122	Silent	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	591385	3229122	152041438	2207	7581										
MXRA5	25878	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	3241638	3241638	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cccgagcccccttcatcctcCacgatgtcttctctgactct	5	19	4	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MXRA5-136	NM_015419	exon5	c.G2088C	p.V696V	ATCCTCCACGATG	.	73	45	91	0	.	0	0	0	0	0	G	3241638	C	G	3241638	2	3	31	1	0	0	0	0	0	0	0	1	10031	581	21	3		3	MXRA5	23	3241638	Silent	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	12516	3241638	152028922	2208	7582										
MXRA5	25878	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	3248114	3248114	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	atctcacaatcgcaggtccaCggatttccctgcaagtaaag	8	12	1	0	rs200950732	alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MXRA5-136	NM_015419	exon4	c.G654T	p.P218P	GGTCCACGGATTT	.	76	38	132	0	.	0	0	0	0	0	A	3248114	C	A	3248114	2	1	31	1	0	0	0	0	0	0	0	1	10031	523	19	2		2	MXRA5	23	3248114	Silent	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	6476	3248114	152022446	2209	7583										
FAM9A	171482	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	8763196	8763196	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tccttctcctcctcctcctcCttcttctccttcttctcctc	0	22	5	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FAM9A-130	NM_174951	exon7	c.G754T	p.G252X	CTCCTCCTTCTTC	.	48	32	59	0	.	0	0	0	0	0	A	8763196	C	A	8763196	4	1	31	1	0	0	0	0	0	1	0	0	5678	690	24	3	256	3	FAM9A	23	8763196	Nonsense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	5515082	8763196	146507364	2210	7584										
AMELX	265	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	11316882	11316882	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	acaccaccagccaaacctccCtccgcccgcccagcagccct	5	24	0	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	AMELX-130	NM_182680	exon6	c.C401T	p.P134L	ACCTCCCTCCGCC	.	162	77	153	0	.	0	0	0	0	0	T	11316882	C	T	11316882	3	4	31	1	0	0	0	0	1	0	0	0	569	681	24	3	419	3	AMELX	23	11316882	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	2553686	11316882	143953678	2211	7585										
ARHGAP6	395	hgsc.bcm.edu	37	chrX	11682852	11682852	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gtccaggctgcgggtctggcGcagcttcctcttggagaagc	15	12	2	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ARHGAP6-227	NM_006125	exon1	c.C97A	p.R33S	TCTGGCGCAGCTT	.	44	13	32	0	.	0	0	0	0	0	T	11682852	G	T	11682852	3	4	31	1	0	0	0	0	1	0	0	0	887	1087	38	2	3001	2	ARHGAP6	23	11682852	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	365970	11682852	143587708	2212	7586										
FAM9C	171484	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	13056583	13056583	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	atctctttcagttcctttccCatcttgttgccacctctttt	3	14	4	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FAM9C-130	NM_174901	exon7	c.G478A	p.G160R	CTTTCCCATCTTG	.	17	8	35	0	.	0	0	0	0	0	T	13056583	C	T	13056583	3	4	31	1	0	0	0	0	1	0	0	0	5680	594	21	3	26	3	FAM9C	23	13056583	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	1373731	13056583	142213977	2213	7587										
ZRSR2	8233	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	15841143	15841143	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	agggggaagaaatctcacaaAcgcacatcaaagagtcggga	12	8	2	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ZRSR2-133	NM_005089	exon11	c.A1227G	p.K409K	TCACAAACGCACA	.	214	125	210	1	.	0	0	0	0	0	G	15841143	A	G	15841143	2	3	31	1	0	0	0	0	0	0	0	1	18262	40	2	4		4	ZRSR2	23	15841143	Silent	SNP	A	TCGA-OR-A5KB-01A-11D-A30A-10	2784560	15841143	139429417	2214	7588										
GRPR	2925	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	16168476	16168476	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	atccaggcctctcatgccctGatgaagatctgcctcaaagc	8	14	3	3	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GRPR-565	NM_005314	exon2	c.G462A	p.L154L	TGCCCTGATGAAG	.	107	60	164	0	.	0	0	0	0	0	A	16168476	G	A	16168476	2	1	31	1	0	0	0	0	0	0	0	1	6829	1277	45	3		3	GRPR	23	16168476	Silent	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	327333	16168476	139102084	2215	7589										
PHKA2	5256	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	18911675	18911675	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	actgctcttgttaggtaggtCatcgtcccataagccccact	8	13	2	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PHKA2-131	NM_000292	exon33	c.G3636T	p.M1212I	GTAGGTCATCGTC	.	231	103	155	0	.	0	0	0	0	0	A	18911675	C	A	18911675	3	1	31	1	0	0	0	0	1	0	0	0	11873	826	29	3	75	3	PHKA2	23	18911675	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	2743199	18911675	136358885	2216	7590										
PHKA2	5256	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	18942242	18942242	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	acagcagaatgaatgtctgaGccatcatttgctaaggaaaa	9	7	2	3	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PHKA2-131	NM_000292	exon17	c.C1725T	p.G575G	GTCTGAGCCATCA	.	352	133	286	1	.	0	0	0	0	0	A	18942242	G	A	18942242	2	1	31	1	0	0	0	0	0	0	0	1	11873	958	34	3		3	PHKA2	23	18942242	Silent	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	30567	18942242	136328318	2217	7591										
GPR64	10149	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	19046318	19046318	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tacctggggaacagtgctttCtttatcatattgaaacatga	8	7	2	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GPR64-130	NM_001184834	exon10	c.G397T	p.E133X	TGCTTTCTTTATC	.	147	46	153	0	.	0	0	0	0	0	A	19046318	C	A	19046318	4	1	31	1	0	0	0	0	0	1	0	0	6725	922	32	3	2736	3	GPR64	23	19046318	Nonsense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	104076	19046318	136224242	2218	7592										
MAGEB6	158809	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	26212653	26212653	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tgtgtccgcagagagtacaaGccctacttccctcagatcct	8	14	1	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MAGEB6-133	NM_173523	exon2	c.G690T	p.K230N	GTACAAGCCCTAC	.	126	66	208	0	.	0	0	0	0	0	T	26212653	G	T	26212653	3	4	31	1	0	0	0	0	1	0	0	0	9207	962	34	3	692	3	MAGEB6	23	26212653	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	7166335	26212653	129057907	2219	7593										
MAGEB6	158809	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	26212780	26212780	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gcaagctaggcctccccagtGaaggaattctgagtggtgat	13	9	1	3	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MAGEB6-133	NM_173523	exon2	c.G817T	p.E273X	CCCAGTGAAGGAA	.	123	64	167	0	.	0	0	0	0	0	T	26212780	G	T	26212780	4	4	31	1	0	0	0	0	0	1	0	0	9207	1291	45	3	819	3	MAGEB6	23	26212780	Nonsense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	127	26212780	129057780	2220	7594										
DCAF8L1	139425	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	27998833	27998833	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	actggccagtcgggtgccacGctggttaaagtgtatggtac	14	9	0	0	rs148833488	alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DCAF8L1-112	NM_001017930	exon1	c.C619A	p.R207S	TGCCACGCTGGTT	.	184	93	238	0	G|1.000;A|0.000	0	0	0	0	0	T	27998833	G	T	27998833	3	4	31	1	0	0	0	0	1	0	0	0	4283	1087	38	2	1187	2	DCAF8L1	23	27998833	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	1786053	27998833	127271727	2221	7595										
MAGEB1	4112	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	30268640	30268640	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ggtcagaagagtaagctccgTgctcgtgagaaacgccgcaa	13	10	1	3	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MAGEB1-130	NM_177415	exon3	c.T30A	p.R10R	GCTCCGTGCTCGT	.	271	143	377	0	.	0	0	0	0	0	A	30268640	T	A	30268640	2	1	31	1	0	0	0	0	0	0	0	1	9200	1683	59	5		5	MAGEB1	23	30268640	Silent	SNP	T	TCGA-OR-A5KB-01A-11D-A30A-10	2269807	30268640	125001920	2222	7596										
TAB3	257397	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	30849617	30849617	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	taagaaaggtgcagctatcaCaattccatggagccccttcg	9	11	1	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TAB3-131	NM_152787	exon11	c.G2066T	p.C689F	CTATCACAATTCC	.	164	32	164	0	.	0	0	0	0	0	A	30849617	C	A	30849617	3	1	31	1	0	0	0	0	1	0	0	0	15534	478	17	3	76	3	TAB3	23	30849617	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	580977	30849617	124420943	2223	7597										
FTHL17	53940	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	31090008	31090008	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tccagcgtgatgtggctgttGatggcggcgtcgcagttggt	17	8	0	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FTHL17-130	NM_031894	exon1	c.C63G	p.I21M	GCTGTTGATGGCG	.	566	131	305	0	.	0	0	0	0	0	C	31090008	G	C	31090008	3	2	31	1	0	0	0	0	1	0	0	0	6102	1280	45	3	492	3	FTHL17	23	31090008	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	240391	31090008	124180552	2224	7598										
DMD	1756	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	31222119	31222119	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	acttggctcaatgttactgcCcccaaaggatgcaacttcac	7	13	2	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DMD-265	NM_004006	exon67	c.G9766A	p.G3256S	TACTGCCCCCAAA	.	220	50	234	0	.	0	0	0	0	0	T	31222119	C	T	31222119	3	4	31	1	0	0	0	0	1	0	0	0	4591	623	22	3	1433	3	DMD	23	31222119	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	132111	31222119	124048441	2225	7599										
DMD	1756	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chrX	31514988	31514988	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	taattcatcatctttcagctGtagccacaccagaagttcct	5	12	4	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DMD-265	NM_004006	exon57	c.C8464A	p.Q2822K	TCAGCTGTAGCCA	.	199	93	219	1	.	0	0	0	0	0	T	31514988	G	T	31514988	3	4	31	1	0	0	0	0	1	0	0	0	4591	1386	48	3	2799	3	DMD	23	31514988	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	292869	31514988	123755572	2226	7600										
DMD	1756	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	32360319	32360320	+	Missense_Mutation	DNP	CC	CC	AA													0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ggctccactgccattgcggcCccatcctcagacaagccctc					novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	CC	CC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DMD-265	NM_004006	exon41	c.G5819T	p.G1940V	GCGGCCCCATCCT	.	179	9	195	0	.	0	0	0	0	0	AA	32360320	CC	AA	32360319	3	1	31	1	0	0	0	0	1	0	0	0	4591	610	22	3	5541	3	DMD	23	32360319	Missense_Mutation	DNP	CC	TCGA-OR-A5KB-01A-11D-A30A-10	845331	32360319	122910241	2227	7601										
FAM47B	170062	ucsc.edu;bcgsc.ca	37	chrX	34960969	34960969	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	atgggggaccggaggccacaGgaccggccaaggtcccaagg	17	12	0	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FAM47B-196	NM_152631	exon1	c.G21T	p.Q7H	GCCACAGGACCGG	.	271	162	368	4	.	0	0	0	0	0	T	34960969	G	T	34960969	3	4	31	1	0	0	0	0	1	0	0	0	5589	991	35	3	23	3	FAM47B	23	34960969	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	2600650	34960969	120309591	2228	7602										
FAM47B	170062	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	34961915	34961915	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tgtccagtctctgcccggagCctcccgaggctggagtgtcc	13	15	1	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FAM47B-196	NM_152631	exon1	c.C967A	p.P323T	CCGGAGCCTCCCG	.	80	43	120	1	.	0	0	0	0	0	A	34961915	C	A	34961915	3	1	31	1	0	0	0	0	1	0	0	0	5589	739	26	3	969	3	FAM47B	23	34961915	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	946	34961915	120308645	2229	7603										
CXorf22	170063	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	35971805	35971805	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gtaggaagtaaagatggattTttgagagatgatgactataa	12	1	0	5	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CXorf22-131	NM_152632	exon7	c.T1143G	p.F381L	TGGATTTTTGAGA	.	163	36	247	0	.	0	0	0	0	0	G	35971805	T	G	35971805	3	3	31	1	0	0	0	0	1	0	0	0	4108	1838	64	5	1169	5	CXorf22	23	35971805	Missense_Mutation	SNP	T	TCGA-OR-A5KB-01A-11D-A30A-10	1009890	35971805	119298755	2230	7604										
FAM47C	442444	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	37027035	37027035	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cctggtaaatacccctgtggGgaattctcccctcggcctcc	9	16	1	0	rs61730915	byfrequency;alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FAM47C-111	NM_001013736	exon1	c.G552T	p.G184G	CTGTGGGGAATTC	.	71	49	93	0	G|0.992;A|0.008	0	0	0	0	0	T	37027035	G	T	37027035	2	4	31	1	0	0	0	0	0	0	0	1	5590	1219	43	3		3	FAM47C	23	37027035	Silent	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	1055230	37027035	118243525	2231	7605										
FAM47C	442444	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	37028109	37028109	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	caggcacctcctgagagtagCgtatctcatctccgcccaga	9	15	2	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FAM47C-111	NM_001013736	exon1	c.C1626A	p.S542R	GAGTAGCGTATCT	.	92	41	117	1	.	0	0	0	0	0	A	37028109	C	A	37028109	3	1	31	1	0	0	0	0	1	0	0	0	5590	767	27	2	1628	2	FAM47C	23	37028109	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	1074	37028109	118242451	2232	7606										
USP9X	8239	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	41025466	41025466	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	aggattagattacctttggaGggtaagtcaaaagtaggaac	12	4	1	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	USP9X-563	NM_001039591	exon16	c.G2327C	p.R776T	TTTGGAGGGTAAG	.	48	30	48	0	.	0	0	0	0	0	C	41025466	G	C	41025466	3	2	31	1	0	0	0	0	1	0	0	0	17128	1014	35	3	2385	3	USP9X	23	41025466	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	3997357	41025466	114245094	2233	7607										
CHST7	56548	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	46433693	46433693	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cacatctacgtgcatgccacCtggcgcaccggctcgtcctt	9	17	1	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CHST7-133	NM_019886	exon1	c.C327A	p.T109T	TGCCACCTGGCGC	.	185	39	138	2	.	0	0	0	0	0	A	46433693	C	A	46433693	2	1	31	1	0	0	0	0	0	0	0	1	3415	668	24	3		3	CHST7	23	46433693	Silent	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	5408227	46433693	108836867	2234	7608										
SLC9A7	84679	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	46541866	46541866	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gaactttccgctgacattcaCtaataaggtactgaaggccc	8	11	1	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SLC9A7-132	NM_001257291	exon2	c.G430T	p.V144L	CATTCACTAATAA	.	133	22	152	0	.	0	0	0	0	0	A	46541866	C	A	46541866	3	1	31	1	0	0	0	0	1	0	0	0	14754	565	20	3	1811	3	SLC9A7	23	46541866	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	108173	46541866	108728694	2235	7609										
NDUFB11	54539	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	47002022	47002022	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	accctgtgcacctgtagtcaGgcagataggccacaaaggtg	12	11	1	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	NDUFB11-130	NM_019056	exon2	c.C329A	p.P110H	TAGTCAGGCAGAT	.	202	48	221	0	.	0	0	0	0	0	T	47002022	G	T	47002022	3	4	31	1	0	0	0	0	1	0	0	0	10309	1000	35	3	170	3	NDUFB11	23	47002022	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	460156	47002022	108268538	2236	7610										
NDUFB11	54539	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	47002127	47002127	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	aaacggggtccttgtcataaCcatgggagtctgggttctgt	13	8	3	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	NDUFB11-130	NM_019056	exon2	c.G224T	p.G75V	TCATAACCATGGG	.	253	48	322	0	.	0	0	0	0	0	A	47002127	C	A	47002127	3	1	31	1	0	0	0	0	1	0	0	0	10309	507	18	3	275	3	NDUFB11	23	47002127	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	105	47002127	108268433	2237	7611										
RBM10	8241	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	47032530	47032530	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tgtatctccccgtatagatcCgtggccagctgcagtcgcac	10	14	1	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	RBM10-626	NM_001204468	exon5	c.C631A	p.R211S	TAGATCCGTGGCC	.	137	25	121	1	.	0	0	0	0	0	A	47032530	C	A	47032530	3	1	31	1	0	0	0	0	1	0	0	0	13146	652	23	2	450	2	RBM10	23	47032530	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	30403	47032530	108238030	2238	7612										
ZNF81	347344	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	47705685	47705685	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	acatgccagctaacgaggacGctccccagccaggggaacat	11	14	0	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ZNF81-130	NM_007137	exon2	c.G19T	p.A7S	GAGGACGCTCCCC	.	89	24	82	0	.	0	0	0	0	0	T	47705685	G	T	47705685	3	4	31	1	0	0	0	0	1	0	0	0	18211	1087	38	2	21	2	ZNF81	23	47705685	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	673155	47705685	107564875	2239	7613										
ZNF630	57232	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	47919260	47919260	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gctcctgttataatttagtaAgtctgaattagacttcaagc	7	7	2	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ZNF630-131	NM_001037735	exon5	c.T571A	p.L191I	TTAGTAAGTCTGA	.	34	10	43	0	.	0	0	0	0	0	T	47919260	A	T	47919260	3	4	31	1	0	0	0	0	1	0	0	0	18091	69	3	5	1406	5	ZNF630	23	47919260	Missense_Mutation	SNP	A	TCGA-OR-A5KB-01A-11D-A30A-10	213575	47919260	107351300	2240	7614										
SLC38A5	92745	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	48319044	48319044	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gccccacgcacagggaacagCacgactggcacagtgagggt	14	13	0	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SLC38A5-133	NM_033518	exon14	c.G1059T	p.V353V	GAACAGCACGACT	.	172	37	152	1	.	0	0	0	0	0	A	48319044	C	A	48319044	2	1	31	1	0	0	0	0	0	0	0	1	14642	697	25	3		3	SLC38A5	23	48319044	Silent	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	399784	48319044	106951516	2241	7615										
WAS	7454	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	48547809	48547809	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gatgcagaagagaagcagagCcatccactcctccggtgagc	12	12	0	4	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	WAS-563	NM_000377	exon11	c.C1439T	p.A480V	GCAGAGCCATCCA	.	342	75	360	0	.	0	0	0	0	0	T	48547809	C	T	48547809	3	4	31	1	0	0	0	0	1	0	0	0	17289	739	26	3	1481	3	WAS	23	48547809	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	228765	48547809	106722751	2242	7616										
HDAC6	10013	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	48676461	48676461	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tccccaggatcctgattgtgGattgggatgtccaccacggt	12	11	0	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	HDAC6-230	NM_006044	exon21	c.G1939T	p.D647Y	ATTGTGGATTGGG	.	286	51	271	1	.	0	0	0	0	0	T	48676461	G	T	48676461	3	4	31	1	0	0	0	0	1	0	0	0	7032	1174	41	3	2017	3	HDAC6	23	48676461	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	128652	48676461	106594099	2243	7617										
HDAC6	10013	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	48678641	48678641	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ctgatgggccttgccagtggCcgcattatccttatcctaga	10	12	0	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	HDAC6-230	NM_006044	exon23	c.C2316A	p.G772G	CAGTGGCCGCATT	.	80	15	77	0	.	0	0	0	0	0	A	48678641	C	A	48678641	2	1	31	1	0	0	0	0	0	0	0	1	7032	726	26	3		3	HDAC6	23	48678641	Silent	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	2180	48678641	106591919	2244	7618										
OTUD5	55593	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	48814313	48814313	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ctcgtcctcactgttgtagcCtgcgccgacctcctcacgct	8	18	2	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OTUD5-541	NM_001136157	exon1	c.G520T	p.G174C	TGTAGCCTGCGCC	.	148	31	86	1	.	0	0	0	0	0	A	48814313	C	A	48814313	3	1	31	1	0	0	0	0	1	0	0	0	11344	681	24	3	1231	3	OTUD5	23	48814313	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	135672	48814313	106456247	2245	7619										
KCND1	3750	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	48822694	48822694	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ggcttcactgaaggtgagctCatctgtgaactcatggcact	11	10	4	3	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	KCND1-133	NM_004979	exon5	c.G1486C	p.E496Q	TGAGCTCATCTGT	.	418	76	385	1	.	0	0	0	0	0	G	48822694	C	G	48822694	3	3	31	1	0	0	0	0	1	0	0	0	8039	835	29	3	465	3	KCND1	23	48822694	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	8381	48822694	106447866	2246	7620										
GRIPAP1	56850	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	48832699	48832699	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gctgtgtctctgccagccgcTgaaagagctcagccacttcc	10	15	2	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GRIPAP1-227	NM_020137	exon23	c.A2138T	p.Q713L	AGCCGCTGAAAGA	.	228	46	222	1	.	0	0	0	0	0	A	48832699	T	A	48832699	3	1	31	1	0	0	0	0	1	0	0	0	6810	1580	55	5	403	5	GRIPAP1	23	48832699	Missense_Mutation	SNP	T	TCGA-OR-A5KB-01A-11D-A30A-10	10005	48832699	106437861	2247	7621										
GRIPAP1	56850	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	48853737	48853737	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ctgtgcagctttgcctgcagCatctcattttcactcagcaa	7	13	3	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GRIPAP1-227	NM_020137	exon5	c.G231C	p.M77I	CTGCAGCATCTCA	.	51	13	36	0	.	0	0	0	0	0	G	48853737	C	G	48853737	3	3	31	1	0	0	0	0	1	0	0	0	6810	710	25	3	2436	3	GRIPAP1	23	48853737	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	21038	48853737	106416823	2248	7622										
PRAF2	11230	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	48929617	48929617	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	aatgctctcgatcttgttctCaatcttgttcttaaggttgc	7	9	5	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PRAF2-130	NM_007213	exon3	c.G448C	p.E150Q	TGTTCTCAATCTT	.	73	19	66	0	.	0	0	0	0	0	G	48929617	C	G	48929617	3	3	31	1	0	0	0	0	1	0	0	0	12454	835	29	3	92	3	PRAF2	23	48929617	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	75880	48929617	106340943	2249	7623										
WDR45	11152	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	48935536	48935536	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	aagggctccacgttgtagatGcgcacacctgtctccatggc	11	13	1	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	WDR45-131	NM_007075	exon4	c.C90T	p.R30R	GTAGATGCGCACA	.	91	19	93	0	.	0	0	0	0	0	A	48935536	G	A	48935536	2	1	31	1	0	0	0	0	0	0	0	1	17335	1306	46	3		3	WDR45	23	48935536	Silent	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	5919	48935536	106335024	2250	7624										
CACNA1F	778	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	49074374	49074374	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	caccttgaagagctgcacccCgatgcaggcgaacataaatt	9	12	0	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CACNA1F-176	NM_005183	exon25	c.G3052A	p.G1018R	GCACCCCGATGCA	.	152	46	155	0	.	0	0	0	0	0	T	49074374	C	T	49074374	3	4	31	1	0	0	0	0	1	0	0	0	2549	652	23	1	2977	1	CACNA1F	23	49074374	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	138838	49074374	106196186	2251	7625										
PPP1R3F	89801	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	49142338	49142338	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gcaaccccgcagaagaaggtGatgtccccagaagcagtcca	11	13	0	4	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PPP1R3F-229	NM_033215	exon4	c.G1186T	p.D396Y	GAAGGTGATGTCC	.	329	49	260	0	.	0	0	0	0	0	T	49142338	G	T	49142338	3	4	31	1	0	0	0	0	1	0	0	0	12407	1290	45	3	1200	3	PPP1R3F	23	49142338	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	67964	49142338	106128222	2252	7626										
CLCN5	1184	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	49851057	49851057	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tggtggcagcattcactctaCgctccatcaatccatttggg	9	12	3	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CLCN5-132	NM_001127898	exon11	c.C1087T	p.R363C	ACTCTACGCTCCA	.	117	30	100	0	.	0	0	0	0	0	T	49851057	C	T	49851057	3	4	31	1	0	0	0	0	1	0	0	0	3472	536	19	1	1121	1	CLCN5	23	49851057	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	708719	49851057	105419503	2253	7627										
AKAP4	8852	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	49957836	49957836	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gcatgagtttccttgcttttGgttccagatggttaggccct	11	9	0	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	AKAP4-540	NM_003886	exon5	c.C1528A	p.Q510K	GCTTTTGGTTCCA	.	111	23	96	1	.	0	0	0	0	0	T	49957836	G	T	49957836	3	4	31	1	0	0	0	0	1	0	0	0	453	1357	47	3	1044	3	AKAP4	23	49957836	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	106779	49957836	105312724	2254	7628										
CCNB3	85417	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chrX	50054083	50054083	+	Frame_Shift_Del	DEL	G	G	-													0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cattgttggtcccccaagttGgaaccagcccaaatgtgtct					novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CCNB3-482	NM_033031	exon5	c.2914delG	p.G972fs	CAAGTTGGAACCA	.	186	50	204	0	.	0	0	0	0	0	-	50054083	G	-	50054083	7	5	31	1	0	1	0	1	0	0	0	0	2920	1349	47	0	2928	0	CCNB3	23	50054083	Frame_Shift_Del	DEL	G	TCGA-OR-A5KB-01A-11D-A30A-10	96247	50054083	105216477	2255	7629										
DGKK	139189	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	50121627	50121627	+	RNA	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	atacgggacattgccatctgCacagaaccaaagattgccac	8	12	1	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DGKK-227	.	.	.	.	CATCTGCACAGAA	.	166	71	161	1	.	0	0	0	0	0	A	50121627	C	A	50121627	1	1	31	0	1	0	0	0	0	0	0	0	4483	697	25	3		3	DGKK	23	50121627	RNA	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	67544	50121627	105148933	2256	7630										
SHROOM4	57477	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chrX	50377365	50377365	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gccccgggtccctccacttcGcctaccacccatccggctgc	8	22	0	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SHROOM4-131	NM_020717	exon4	c.C1708A	p.R570R	CACTTCGCCTACC	.	65	16	87	0	.	0	0	0	0	0	T	50377365	G	T	50377365	2	4	31	1	0	0	0	0	0	0	0	1	14331	1095	38	2		2	SHROOM4	23	50377365	Silent	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	255738	50377365	104893195	2257	7631										
SHROOM4	57477	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	50377405	50377405	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cactccttgggctcgctgtcCccttcttcacctgcctctgt	7	18	3	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SHROOM4-131	NM_020717	exon4	c.G1668C	p.G556G	GCTGTCCCCTTCT	.	97	21	138	0	.	0	0	0	0	0	G	50377405	C	G	50377405	2	3	31	1	0	0	0	0	0	0	0	1	14331	610	22	3		3	SHROOM4	23	50377405	Silent	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	40	50377405	104893155	2258	7632										
NUDT10	170685	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	51075872	51075872	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	accccgaggggttcaagaagCgggcggcgtgcctgtgcttc	16	12	1	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	NUDT10-90	NM_153183	exon2	c.C55A	p.R19R	AAGAAGCGGGCGG	.	759	121	541	1	.	0	0	0	0	0	A	51075872	C	A	51075872	2	1	31	1	0	0	0	0	0	0	0	1	10755	759	27	2		2	NUDT10	23	51075872	Silent	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	698467	51075872	104194688	2259	7633										
GSPT2	23708	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	51487049	51487049	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	aggatgggacggggggcaccTgtggaaccttcccgagagga	18	9	0	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GSPT2-228	NM_018094	exon1	c.T327A	p.P109P	GGCACCTGTGGAA	.	67	12	28	0	.	0	0	0	0	0	A	51487049	T	A	51487049	2	1	31	1	0	0	0	0	0	0	0	1	6848	1567	55	5		5	GSPT2	23	51487049	Silent	SNP	T	TCGA-OR-A5KB-01A-11D-A30A-10	411177	51487049	103783511	2260	7634										
MAGED1	9500	hgsc.bcm.edu;bcgsc.ca	37	chrX	51639728	51639728	+	Frame_Shift_Del	DEL	G	G	-													0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	acgtcagagccctccagctaGgcagaccccaccagcctggc					novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MAGED1-133	NM_001005333	exon5	c.1145delG	p.R382fs	CAGCTAGGCAGAC	.	283	106	349	2	.	0	0	0	0	0	-	51639728	G	-	51639728	7	5	31	1	0	1	0	1	0	0	0	0	9211	1000	35	0	1159	0	MAGED1	23	51639728	Frame_Shift_Del	DEL	G	TCGA-OR-A5KB-01A-11D-A30A-10	152679	51639728	103630832	2261	7635										
GPR173	54328	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	53105990	53105990	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ctccttactacttcctgctgGacctgtgcctggccgatggc	10	15	0	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GPR173-130	NM_018969	exon2	c.G187T	p.D63Y	CTGCTGGACCTGT	.	121	26	145	0	.	0	0	0	0	0	T	53105990	G	T	53105990	3	4	31	1	0	0	0	0	1	0	0	0	6691	1174	41	3	189	3	GPR173	23	53105990	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	1466262	53105990	102164570	2262	7636										
IQSEC2	23096	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	53278002	53278002	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ccaggatgaagtgagccactCccaccggtgtgtctgacagg	13	12	1	3	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	IQSEC2-178	NM_001111125	exon6	c.G2360T	p.G787V	GCCACTCCCACCG	.	94	42	76	0	.	0	0	0	0	0	A	53278002	C	A	53278002	3	1	31	1	0	0	0	0	1	0	0	0	7839	855	30	3	2146	3	IQSEC2	23	53278002	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	172012	53278002	101992558	2263	7637										
IQSEC2	23096	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	53279726	53279726	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gcacttccccaacctccgacCcccagccacaccactgggcc	6	23	0	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	IQSEC2-178	NM_001111125	exon5	c.G2032T	p.G678C	TCCGACCCCCAGC	.	68	18	57	0	.	0	0	0	0	0	A	53279726	C	A	53279726	3	1	31	1	0	0	0	0	1	0	0	0	7839	623	22	3	2478	3	IQSEC2	23	53279726	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	1724	53279726	101990834	2264	7638										
IQSEC2	23096	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	53279966	53279966	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cacggagctgtcactaggagGctcaatggtaagcaggggaa	15	8	2	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	IQSEC2-178	NM_001111125	exon5	c.C1792G	p.P598A	TAGGAGGCTCAAT	.	115	27	106	0	.	0	0	0	0	0	C	53279966	G	C	53279966	3	2	31	1	0	0	0	0	1	0	0	0	7839	1203	42	3	2718	3	IQSEC2	23	53279966	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	240	53279966	101990594	2265	7639										
HUWE1	10075	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	53561133	53561133	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ggtcagcttgatcgaaagaaCgcaatgctctccagaaccac	9	12	2	3	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	HUWE1-280	NM_031407	exon83	c.G12857A	p.R4286H	AAAGAACGCAATG	.	414	97	434	0	.	0	0	0	0	0	T	53561133	C	T	53561133	3	4	31	1	0	0	0	0	1	0	0	0	7482	536	19	1	275	1	HUWE1	23	53561133	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	281167	53561133	101709427	2266	7640										
HUWE1	10075	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	53602737	53602737	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cataaccccaggtttaggatCagatttatctgctaggaaaa	8	8	2	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	HUWE1-280	NM_031407	exon45	c.G5896T	p.D1966Y	TAGGATCAGATTT	.	146	26	178	0	.	0	0	0	0	0	A	53602737	C	A	53602737	3	1	31	1	0	0	0	0	1	0	0	0	7482	826	29	3	7388	3	HUWE1	23	53602737	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	41604	53602737	101667823	2267	7641										
HUWE1	10075	broad.mit.edu	37	chrX	53634661	53634661	+	Splice_Site	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	atagattccacaaatttcatCtaggtaataaaaatttttta	3	5	2	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	HUWE1-280	NM_031407	exon26	c.2320-1G>T	.	TTTCATCTAGGTA	.	45	4	56	0	.	0	0	0	0	0	A	53634661	C	A	53634661	5	1	31	1	0	0	0	0	0	0	1	0	7482	927	32	3	11045	3	HUWE1	23	53634661	Splice_Site	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	31924	53634661	101635899	2268	7642										
WNK3	65267	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	54228531	54228531	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tactgcttcctttgtccagtCatccaccagcttgtgtaagt	7	12	1	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	WNK3-441	NM_020922	exon23	c.G4966T	p.D1656Y	TCCAGTCATCCAC	.	105	26	127	0	.	0	0	0	0	0	A	54228531	C	A	54228531	3	1	31	1	0	0	0	0	1	0	0	0	17417	826	29	3	444	3	WNK3	23	54228531	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	593870	54228531	101042029	2269	7643										
WNK3	65267	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	54263789	54263789	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tttattttctttacaggtttCctgaagagcttgtaacttct	6	7	2	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	WNK3-441	NM_020922	exon20	c.G4210C	p.E1404Q	AGGTTTCCTGAAG	.	63	6	81	0	.	0	0	0	0	0	G	54263789	C	G	54263789	3	3	31	1	0	0	0	0	1	0	0	0	17417	864	30	3	1212	3	WNK3	23	54263789	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	35258	54263789	101006771	2270	7644										
WNK3	65267	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	54263899	54263899	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	taataaaggcttcttcactaGaatggtttgtctcactgaac	7	8	3	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	WNK3-441	NM_020922	exon20	c.C4100A	p.S1367Y	TCACTAGAATGGT	.	15	5	21	0	.	0	0	0	0	0	T	54263899	G	T	54263899	3	4	31	1	0	0	0	0	1	0	0	0	17417	942	33	3	1322	3	WNK3	23	54263899	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	110	54263899	101006661	2271	7645										
GNL3L	54552	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	54586952	54586952	+	Splice_Site	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cctgtatttctccatttgcaGataaaatcgccagcaagctg	7	11	1	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GNL3L-131	NM_019067	exon16	c.1667-1G>C	.	TTTGCAGATAAAA	.	106	20	79	0	.	0	0	0	0	0	C	54586952	G	C	54586952	5	2	31	1	0	0	0	0	0	0	1	0	6558	956	33	3	1724	3	GNL3L	23	54586952	Splice_Site	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	323053	54586952	100683608	2272	7646										
KLF8	11279	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	56259773	56259773	+	Silent	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tcctcagctagtgacatggtCggtaagtgactctgggacta	12	9	2	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	KLF8-131	NM_001159296	exon2	c.C6A	p.V2V	CATGGTCGGTAAG	.	104	21	140	1	.	0	0	0	0	0	A	56259773	C	A	56259773	2	1	31	1	0	0	0	0	0	0	0	1	8373	898	31	2		2	KLF8	23	56259773	Silent	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	1672821	56259773	99010787	2273	7647										
SPIN3	169981	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	57020873	57020873	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ctggtacatatataatacagGatctttctcataggtaatgt	7	6	2	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SPIN3-131	NM_001010862	exon2	c.C508A	p.P170T	ATACAGGATCTTT	.	173	31	190	1	.	0	0	0	0	0	T	57020873	G	T	57020873	3	4	31	1	0	0	0	0	1	0	0	0	15092	1174	41	3	272	3	SPIN3	23	57020873	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	761100	57020873	98249687	2274	7648										
SPIN2B	474343	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	57146348	57146348	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	atcatcaaacttgatgaaatAcacagagggtttggcttcca	8	8	2	3	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SPIN2B-90	NM_001006683	exon2	c.T715A	p.Y239N	TGAAATACACAGA	.	824	160	973	0	.	0	0	0	0	0	T	57146348	A	T	57146348	3	4	31	1	0	0	0	0	1	0	0	0	15091	391	14	5	65	5	SPIN2B	23	57146348	Missense_Mutation	SNP	A	TCGA-OR-A5KB-01A-11D-A30A-10	125475	57146348	98124212	2275	7649										
SPIN2B	474343	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	57146372	57146372	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	agagggtttggcttccacttGgtgaatgaccatgccgatcc	12	10	0	3	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SPIN2B-90	NM_001006683	exon2	c.C691A	p.Q231K	CCACTTGGTGAAT	.	771	141	956	0	.	0	0	0	0	0	T	57146372	G	T	57146372	3	4	31	1	0	0	0	0	1	0	0	0	15091	1357	47	3	89	3	SPIN2B	23	57146372	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	24	57146372	98124188	2276	7650										
SPIN2A	54466	broad.mit.edu;bcgsc.ca;mdanderson.org	37	chrX	57162366	57162366	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tgaccatgccgatccttttgGagccatcttctttggtatat	8	10	2	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SPIN2A-130	NM_019003	exon2	c.C665G	p.S222C	CTTTTGGAGCCAT	.	734	148	824	1	.	0	0	0	0	0	C	57162366	G	C	57162366	3	2	31	1	0	0	0	0	1	0	0	0	15090	1174	41	3	115	3	SPIN2A	23	57162366	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	15994	57162366	98108194	2277	7651										
HEPH	9843	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	65412128	65412128	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gagtactgggaagaatttgaGagagccaggcaggtaagagg	17	4	0	4	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	HEPH-135	NM_138737	exon7	c.G1382T	p.R461I	ATTTGAGAGAGCC	.	209	110	345	1	.	0	0	0	0	0	T	65412128	G	T	65412128	3	4	31	1	0	0	0	0	1	0	0	0	7075	942	33	3	1408	3	HEPH	23	65412128	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	8249762	65412128	89858432	2278	7652										
FAM155B	27112	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	68748874	68748874	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ctgtgctcagaatacttcagCgtgacccagcaggaatgcca	10	12	2	2	rs200565192	alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FAM155B-131	NM_015686	exon2	c.C900G	p.S300R	CTTCAGCGTGACC	.	135	80	204	0	C|0.999;T|0.001	0	0	0	0	0	G	68748874	C	G	68748874	3	3	31	1	0	0	0	0	1	0	0	0	5482	767	27	2	906	2	FAM155B	23	68748874	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	3336746	68748874	86521686	2279	7653										
OTUD6A	139562	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	69282886	69282886	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cgtgtctgtggagatgctgcGctgccgcaccgccagctaca	13	14	1	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OTUD6A-541	NM_207320	exon1	c.G512T	p.R171L	TGCTGCGCTGCCG	.	269	154	318	0	.	0	0	0	0	0	T	69282886	G	T	69282886	3	4	31	1	0	0	0	0	1	0	0	0	11345	1087	38	2	514	2	OTUD6A	23	69282886	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	534012	69282886	85987674	2280	7654										
GDPD2	54857	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	69646560	69646560	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gccctcctggcctggcctgtGgctgataccttctaccgtat	10	15	1	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GDPD2-132	NM_017711	exon7	c.G525A	p.V175V	GCCTGTGGCTGAT	.	217	137	268	0	.	0	0	0	0	0	A	69646560	G	A	69646560	2	1	31	1	0	0	0	0	0	0	0	1	6344	1335	47	3		3	GDPD2	23	69646560	Silent	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	363674	69646560	85624000	2281	7655										
TAF1	6872	hgsc.bcm.edu;bcgsc.ca	37	chrX	70683717	70683717	+	Frame_Shift_Del	DEL	G	G	-													0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	atcccaagtcgaacacccaaGacacaagcttcagcagcatc					novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TAF1-900	NM_004606	exon38	c.5503delG	p.D1835fs	ACCCAAGACACAA	.	337	188	480	2	.	0	0	0	0	0	-	70683717	G	-	70683717	7	5	31	1	0	1	0	1	0	0	0	0	15550	942	33	0	5653	0	TAF1	23	70683717	Frame_Shift_Del	DEL	G	TCGA-OR-A5KB-01A-11D-A30A-10	1037157	70683717	84586843	2282	7656										
OGT	8473	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	70776864	70776864	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cactctaaaggagatgcaggAtgttcagggagccttgcagt	13	8	2	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OGT-113	NM_181672	exon10	c.A1229T	p.D410V	TGCAGGATGTTCA	.	207	91	320	0	.	0	0	0	0	0	T	70776864	A	T	70776864	3	4	31	1	0	0	0	0	1	0	0	0	10876	333	12	5	1267	5	OGT	23	70776864	Missense_Mutation	SNP	A	TCGA-OR-A5KB-01A-11D-A30A-10	93147	70776864	84493696	2283	7657										
CXCR3	2833	broad.mit.edu	37	chrX	70837423	70837423	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	agcagctcctcctataactgTccccgccagtcttccagggc	8	17	1	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CXCR3-660	NM_001142797	exon2	c.A40G	p.T14A	TAACTGTCCCCGC	.	139	37	183	43	.	0	0	0	0	0	C	70837423	T	C	70837423	3	2	31	1	0	0	0	0	1	0	0	0	4098	1667	58	4	1211	4	CXCR3	23	70837423	Missense_Mutation	SNP	T	TCGA-OR-A5KB-01A-11D-A30A-10	60559	70837423	84433137	2284	7658										
NHSL2	340527	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	71354404	71354404	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	atgagactaccacccagggtGtgagggcccccgaggcctcc	13	15	0	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	NHSL2-108	NM_001013627	exon4	c.G610A	p.V204M	CAGGGTGTGAGGG	.	250	140	343	0	.	0	0	0	0	0	A	71354404	G	A	71354404	3	1	31	1	0	0	0	0	1	0	0	0	10441	1377	48	3	624	3	NHSL2	23	71354404	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	516981	71354404	83916156	2285	7659										
ZCCHC5	203430	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	77912640	77912640	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tcactgatgtgtgggcagttGattgcagcctgcataggttg	14	7	1	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ZCCHC5-131	NM_152694	exon2	c.C1278A	p.I426I	GCAGTTGATTGCA	.	157	96	200	0	.	0	0	0	0	0	T	77912640	G	T	77912640	2	4	31	1	0	0	0	0	0	0	0	1	17628	1280	45	3		3	ZCCHC5	23	77912640	Silent	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	6558236	77912640	77357920	2286	7660										
TBX22	50945	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	79278676	79278676	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tattcaaatggagcttcaagGatctgaactgtggaaaagat	10	5	3	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TBX22-628	NM_016954	exon2	c.G293T	p.G98V	TTCAAGGATCTGA	.	190	102	286	2	.	0	0	0	0	0	T	79278676	G	T	79278676	3	4	31	1	0	0	0	0	1	0	0	0	15695	1174	41	3	299	3	TBX22	23	79278676	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	1366036	79278676	75991884	2287	7661										
BRWD3	254065	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	79971694	79971694	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tggctttttcttcttttcaaCtgtataaagactgatttcta	5	7	4	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	BRWD3-134	NM_153252	exon20	c.G2287T	p.V763F	TTTCAACTGTATA	.	59	20	79	0	.	0	0	0	0	0	A	79971694	C	A	79971694	3	1	31	1	0	0	0	0	1	0	0	0	1529	565	20	3	3209	3	BRWD3	23	79971694	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	693018	79971694	75298866	2288	7662										
SATL1	340562	ucsc.edu;bcgsc.ca	37	chrX	84362970	84362970	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ctcaggactagttcgctcagGctttgtggccacatgcctgg	12	12	2	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SATL1-175	NM_001012980	exon1	c.C1005A	p.S335R	GCTCAGGCTTTGT	.	227	124	350	3	.	0	0	0	0	0	T	84362970	G	T	84362970	3	4	31	1	0	0	0	0	1	0	0	0	13890	1194	42	3	913	3	SATL1	23	84362970	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	4391276	84362970	70907590	2289	7663										
DACH2	117154	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	85404068	85404068	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	aaccgctgcaaactcatcacCaggaaagacttcgaaacttt	6	12	2	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DACH2-136	NM_001139514	exon1	c.C444T	p.T148T	CATCACCAGGAAA	.	81	40	116	1	.	0	0	0	0	0	T	85404068	C	T	85404068	2	4	31	1	0	0	0	0	0	0	0	1	4227	581	21	3		3	DACH2	23	85404068	Silent	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	1041098	85404068	69866492	2290	7664										
KLHL4	56062	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	86890618	86890618	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gcctcaaatcaatggaatacTttgacccacacactaacaag	5	12	2	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	KLHL4-133	NM_019117	exon9	c.T1768A	p.F590I	GAATACTTTGACC	.	99	26	174	0	.	0	0	0	0	0	A	86890618	T	A	86890618	3	1	31	1	0	0	0	0	1	0	0	0	8412	1609	56	5	1802	5	KLHL4	23	86890618	Missense_Mutation	SNP	T	TCGA-OR-A5KB-01A-11D-A30A-10	1486550	86890618	68379942	2291	7665										
PCDH11X	27328	hgsc.bcm.edu;bcgsc.ca	37	chrX	91132646	91132646	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gctccagttttcacccagtcTttcgtaactgtttctattcc	5	13	3	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PCDH11X-193	NM_001168363	exon2	c.T1407A	p.S469S	CCAGTCTTTCGTA	.	283	165	448	2	.	0	0	0	0	0	A	91132646	T	A	91132646	2	1	31	1	0	0	0	0	0	0	0	1	11537	1596	56	5		5	PCDH11X	23	91132646	Silent	SNP	T	TCGA-OR-A5KB-01A-11D-A30A-10	4242028	91132646	64137914	2292	7666										
PCDH11X	27328	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chrX	91133492	91133492	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ggtttacacagagtgttggtCaaagctaatgacttaggaca	11	6	1	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PCDH11X-193	NM_001168363	exon2	c.C2253G	p.V751V	GTTGGTCAAAGCT	.	519	292	782	0	.	0	0	0	0	0	G	91133492	C	G	91133492	2	3	31	1	0	0	0	0	0	0	0	1	11537	813	29	3		3	PCDH11X	23	91133492	Silent	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	846	91133492	64137068	2293	7667										
PCDH11X	27328	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	91133563	91133563	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	caatctgttcgtgaatgagtCggtgaccaatgctacactga	10	9	1	4	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PCDH11X-193	NM_001168363	exon2	c.C2324A	p.S775X	ATGAGTCGGTGAC	.	526	312	785	2	.	0	0	0	0	0	A	91133563	C	A	91133563	4	1	31	1	0	0	0	0	0	1	0	0	11537	893	31	2	2330	2	PCDH11X	23	91133563	Nonsense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	71	91133563	64136997	2294	7668										
PCDH11X	27328	ucsc.edu	37	chrX	91873458	91873458	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tactcagcaccacagcccacGagtgacacagaccattgctc	7	16	1	2	rs2556894	bycluster	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PCDH11X-193	NM_032968	exon7	c.G3563C	p.R1188P	GCCCACGAGTGAC	.	751	121	795	2	.	0	0	0	0	0	C	91873458	G	C	91873458	3	2	31	1	0	0	0	0	1	0	0	0	11537	1058	37	2	3711	2	PCDH11X	23	91873458	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	739895	91873458	63397102	2295	7669										
PCDH11X	27328	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	91873488	91873488	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gaccattgctctctgccacaGccctccagtgacacagacca	7	17	1	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PCDH11X-193	NM_032968	exon7	c.G3593T	p.S1198I	GCCACAGCCCTCC	.	812	136	855	1	.	0	0	0	0	0	T	91873488	G	T	91873488	3	4	31	1	0	0	0	0	1	0	0	0	11537	971	34	3	3741	3	PCDH11X	23	91873488	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	30	91873488	63397072	2296	7670										
DIAPH2	1730	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	96724708	96724708	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tgcagtggtaaatcatccctGtgcaacaagggctaatccaa	9	10	1	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DIAPH2-133	NM_007309	exon27	c.G3257T	p.C1086F	ATCCCTGTGCAAC	.	286	44	371	0	.	0	0	0	0	0	T	96724708	G	T	96724708	3	4	31	1	0	0	0	0	1	0	0	0	4530	1377	48	3	3363	3	DIAPH2	23	96724708	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	4851220	96724708	58545852	2297	7671										
PCDH19	57526	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	99661493	99661493	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ttgttgtctcgcttgcacttGattgccacgaagatcatagt	9	9	2	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PCDH19-110	NM_001184880	exon1	c.C2103G	p.I701M	GCACTTGATTGCC	.	142	54	156	0	.	0	0	0	0	0	C	99661493	G	C	99661493	3	2	31	1	0	0	0	0	1	0	0	0	11543	1280	45	3	1367	3	PCDH19	23	99661493	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	2936785	99661493	55609067	2298	7672										
TNMD	64102	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	99854700	99854700	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	actggtgggtggcccgcatgCtggggagggtctaataggag	19	7	1	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TNMD-130	NM_022144	exon7	c.C940A	p.L314M	CGCATGCTGGGGA	.	84	15	80	0	.	0	0	0	0	0	A	99854700	C	A	99854700	3	1	31	1	0	0	0	0	1	0	0	0	16359	796	28	3	966	3	TNMD	23	99854700	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	193207	99854700	55415860	2299	7673										
TSPAN6	7105	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	99890216	99890216	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tacgatggcagcgaccagttCgaccaaaaaaacgagagtca	10	10	1	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TSPAN6-131	NM_003270	exon3	c.G310T	p.E104X	CCAGTTCGACCAA	.	175	37	187	0	.	0	0	0	0	0	A	99890216	C	A	99890216	4	1	31	1	0	0	0	0	0	1	0	0	16689	893	31	2	447	2	TSPAN6	23	99890216	Nonsense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	35516	99890216	55380344	2300	7674										
CSTF2	1478	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	100093269	100093269	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ctacaactgactgcagaccaGattgccatgttgcctcctga	8	13	0	4	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CSTF2-131	NM_001325	exon13	c.G1653T	p.Q551H	AGACCAGATTGCC	.	195	33	218	0	.	0	0	0	0	0	T	100093269	G	T	100093269	3	4	31	1	0	0	0	0	1	0	0	0	3990	933	33	3	1703	3	CSTF2	23	100093269	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	203053	100093269	55177291	2301	7675										
ARL13A	392509	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	100243238	100243238	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	acagcatctagaacaatgctCaatcgaagctaagcctctaa	6	11	3	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ARL13A-131	NM_001162490	exon7	c.C710A	p.S237X	AATGCTCAATCGA	.	490	132	454	3	.	0	0	0	0	0	A	100243238	C	A	100243238	4	1	31	1	0	0	0	0	0	1	0	0	928	838	29	3	732	3	ARL13A	23	100243238	Nonsense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	149969	100243238	55027322	2302	7676										
DRP2	1821	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	100509496	100509496	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gcattatttcagcaaacaccCtcagcgaggttatctgcctg	8	12	3	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DRP2-132	NM_001939	exon18	c.C2060A	p.P687H	AACACCCTCAGCG	.	491	109	568	2	.	0	0	0	0	0	A	100509496	C	A	100509496	3	1	31	1	0	0	0	0	1	0	0	0	4775	681	24	3	2122	3	DRP2	23	100509496	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	266258	100509496	54761064	2303	7677										
BTK	695	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	100615077	100615077	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ctgacataaacatacttactCatacatttctatggagtctt	4	9	3	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	BTK-1395	NM_000061	exon9	c.G838T	p.E280X	CTTACTCATACAT	.	69	11	69	0	.	0	0	0	0	0	A	100615077	C	A	100615077	4	1	31	1	0	0	0	0	0	1	0	0	1560	840	29	3	1185	3	BTK	23	100615077	Nonsense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	105581	100615077	54655483	2304	7678										
ARMCX3	51566	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	100880257	100880257	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gctagggccagggcaagggcCagggctacccgggcacgtcg	18	13	0	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ARMCX3-131	NM_016607	exon5	c.C288A	p.A96A	AAGGGCCAGGGCT	.	93	23	127	0	.	0	0	0	0	0	A	100880257	C	A	100880257	2	1	31	1	0	0	0	0	0	0	0	1	962	581	21	3		3	ARMCX3	23	100880257	Silent	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	265180	100880257	54390303	2305	7679										
ARMCX2	9823	broad.mit.edu	37	chrX	100911671	100911671	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ccccagttcgtctacttcaaCtttgcttttcttgcccttgc	5	15	3	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ARMCX2-136	NM_014782	exon5	c.G904T	p.V302F	CTTCAACTTTGCT	.	92	14	87	2	.	0	0	0	0	0	A	100911671	C	A	100911671	3	1	31	1	0	0	0	0	1	0	0	0	961	565	20	3	998	3	ARMCX2	23	100911671	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	31414	100911671	54358889	2306	7680										
NXF5	55998	broad.mit.edu;bcgsc.ca;mdanderson.org	37	chrX	101096062	101096062	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	attcaggattatatcaatgtCacggcccatcaagtcttgaa	7	9	5	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	NXF5-204	NM_032946	exon8	c.G406T	p.D136Y	CAATGTCACGGCC	.	433	147	502	1	.	0	0	0	0	0	A	101096062	C	A	101096062	3	1	31	1	0	0	0	0	1	0	0	0	10815	826	29	3	727	3	NXF5	23	101096062	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	184391	101096062	54174498	2307	7681										
BEX5	340542	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	101409039	101409039	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ctccatgaaccgttccatatCatctccatctccatctatca	2	16	5	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	BEX5-86	NM_001012978	exon3	c.G199A	p.D67N	CCATATCATCTCC	.	167	34	201	0	.	0	0	0	0	0	T	101409039	C	T	101409039	3	4	31	1	0	0	0	0	1	0	0	0	1414	826	29	3	140	3	BEX5	23	101409039	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	312977	101409039	53861521	2308	7682										
GPRASP1	9737	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	101909810	101909810	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ttcaggtccaaaatgagagcTgggaaggaggccaataacag	13	7	1	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GPRASP1-131	NM_001099411	exon3	c.T969A	p.A323A	GAGAGCTGGGAAG	.	46	25	70	0	.	0	0	0	0	0	A	101909810	T	A	101909810	2	1	31	1	0	0	0	0	0	0	0	1	6743	1567	55	5		5	GPRASP1	23	101909810	Silent	SNP	T	TCGA-OR-A5KB-01A-11D-A30A-10	500771	101909810	53360750	2309	7683										
GPRASP2	114928	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	101970728	101970728	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tcaggcccagagtcagggagGaggcaaatatcaggtccaag	14	9	3	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GPRASP2-131	NM_138437	exon4	c.G931T	p.E311X	AGGGAGGAGGCAA	.	153	41	139	0	.	0	0	0	0	0	T	101970728	G	T	101970728	4	4	31	1	0	0	0	0	0	1	0	0	6744	1175	41	3	933	3	GPRASP2	23	101970728	Nonsense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	60918	101970728	53299832	2310	7684										
BEX1	55859	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	102317893	102317893	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	agtgctgactgcccgcagacTatgactcaactgcttttccc	8	14	1	3	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	BEX1-109	NM_018476	exon3	c.A310G	p.S104G	GCAGACTATGACT	.	290	62	252	1	.	0	0	0	0	0	C	102317893	T	C	102317893	3	2	31	1	0	0	0	0	1	0	0	0	1411	1522	53	4	71	4	BEX1	23	102317893	Missense_Mutation	SNP	T	TCGA-OR-A5KB-01A-11D-A30A-10	347165	102317893	52952667	2311	7685										
NXF3	56000	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	102334159	102334159	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	agacactcaccttccttgaaCaccccgttgacagaaaagca	6	14	1	4	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	NXF3-205	NM_022052	exon16	c.G1368T	p.V456V	CTTGAACACCCCG	.	432	194	481	2	.	0	0	0	0	0	A	102334159	C	A	102334159	2	1	31	1	0	0	0	0	0	0	0	1	10814	465	17	3		3	NXF3	23	102334159	Silent	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	16266	102334159	52936401	2312	7686										
BEX4	56271	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	102471392	102471392	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gcagatgaggcactatatgcGcttccaaactcctgaacctg	9	12	0	3	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	BEX4-62	NM_001080425	exon3	c.G311T	p.R104L	ATATGCGCTTCCA	.	323	118	309	2	.	0	0	0	0	0	T	102471392	G	T	102471392	3	4	31	1	0	0	0	0	1	0	0	0	1413	1087	38	2	313	2	BEX4	23	102471392	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	137233	102471392	52799168	2313	7687										
RAB40A	142684	bcgsc.ca	37	chrX	102755188	102755188	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tcctggccagctccgtgaaaGactctatgatgttgaaattg	10	9	1	4	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	RAB40A-227	NM_080879	exon3	c.C497A	p.S166Y	GTGAAAGACTCTA	.	307	94	281	3	.	0	0	0	0	0	T	102755188	G	T	102755188	3	4	31	1	0	0	0	0	1	0	0	0	12974	942	33	3	340	3	RAB40A	23	102755188	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	283796	102755188	52515372	2314	7688										
TCEAL1	9338	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	102884854	102884854	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	aaattcccaacatggacaaaCcacgcaaagaaaatgaagaa	6	9	0	3	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TCEAL1-131	NM_001006639	exon3	c.C10A	p.P4T	GACAAACCACGCA	.	71	18	66	1	.	0	0	0	0	0	A	102884854	C	A	102884854	3	1	31	1	0	0	0	0	1	0	0	0	15707	507	18	3	12	3	TCEAL1	23	102884854	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	129666	102884854	52385706	2315	7689										
TEX13A	56157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	104464179	104464179	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ctctgtggtctccatggaggCagccctggcctccacgtggg	14	14	2	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TEX13A-132	NM_031274	exon5	c.G697T	p.A233S	TGGAGGCAGCCCT	.	48	14	47	0	.	0	0	0	0	0	A	104464179	C	A	104464179	3	1	31	1	0	0	0	0	1	0	0	0	15813	697	25	3	536	3	TEX13A	23	104464179	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	1579325	104464179	50806381	2316	7690										
TEX13A	56157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	104465051	104465051	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cacgttgctatgccggaaccCgctactggggtcctcaggtc	12	14	1	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TEX13A-132	NM_031274	exon2	c.G31T	p.G11W	GGAACCCGCTACT	.	90	33	71	0	.	0	0	0	0	0	A	104465051	C	A	104465051	3	1	31	1	0	0	0	0	1	0	0	0	15813	652	23	2	1208	2	TEX13A	23	104465051	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	872	104465051	50805509	2317	7691										
IL1RAPL2	26280	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	105011209	105011209	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cctgatcaagtggaagggatCcaaaagcagcaaattaaatt	9	7	1	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	IL1RAPL2-194	NM_017416	exon11	c.C1616A	p.S539Y	AGGGATCCAAAAG	.	162	62	190	0	.	0	0	0	0	0	A	105011209	C	A	105011209	3	1	31	1	0	0	0	0	1	0	0	0	7683	855	30	3	1654	3	IL1RAPL2	23	105011209	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	546158	105011209	50259351	2318	7692										
NRK	203447	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	105132287	105132287	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tgtctattcttattccatagGatgaggaagaggatctcagg	11	6	3	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	NRK-630	NM_198465	exon5	c.G253T	p.D85Y	CCATAGGATGAGG	.	393	145	405	1	.	0	0	0	0	0	T	105132287	G	T	105132287	3	4	31	1	0	0	0	0	1	0	0	0	10684	1188	41	3	271	3	NRK	23	105132287	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	121078	105132287	50138273	2319	7693										
NRK	203447	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	105153825	105153825	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gcaaaggcgccaacgcagatGggaagatatctttaatcagc	11	9	2	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	NRK-630	NM_198465	exon13	c.G2192T	p.W731L	GCAGATGGGAAGA	.	273	68	295	0	.	0	0	0	0	0	T	105153825	G	T	105153825	3	4	31	1	0	0	0	0	1	0	0	0	10684	1357	47	3	2242	3	NRK	23	105153825	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	21538	105153825	50116735	2320	7694										
NRK	203447	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	105178368	105178368	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	atcaacacaatcagatttttCtgccaatcactcatctcctt	2	13	6	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	NRK-630	NM_198465	exon20	c.C3431G	p.S1144C	ATTTTTCTGCCAA	.	320	92	298	0	.	0	0	0	0	0	G	105178368	C	G	105178368	3	3	31	1	0	0	0	0	1	0	0	0	10684	913	32	3	3509	3	NRK	23	105178368	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	24543	105178368	50092192	2321	7695										
NRK	203447	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	105187993	105187993	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	atcatcaattcacctttatgCatgggcaccaaagtcctttg	6	11	3	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	NRK-630	NM_198465	exon24	c.C4019A	p.A1340E	TTTATGCATGGGC	.	364	115	304	0	.	0	0	0	0	0	A	105187993	C	A	105187993	3	1	31	1	0	0	0	0	1	0	0	0	10684	710	25	3	4113	3	NRK	23	105187993	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	9625	105187993	50082567	2322	7696										
NRK	203447	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	105197070	105197070	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	caggatggggccaaaaggccAttgaagtgcgctctttgcaa	13	9	1	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	NRK-630	NM_198465	exon28	c.A4558G	p.I1520V	AAGGCCATTGAAG	.	299	130	239	0	.	0	0	0	0	0	G	105197070	A	G	105197070	3	3	31	1	0	0	0	0	1	0	0	0	10684	217	8	4	4668	4	NRK	23	105197070	Missense_Mutation	SNP	A	TCGA-OR-A5KB-01A-11D-A30A-10	9077	105197070	50073490	2323	7697										
SERPINA7	6906	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	105279361	105279361	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ctgtcttggatggatcaaaaGgatttgcccactgggcttaa	11	8	2	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SERPINA7-226	NM_000354	exon3	c.C638T	p.P213L	TCAAAAGGATTTG	.	115	34	140	0	.	0	0	0	0	0	A	105279361	G	A	105279361	3	1	31	1	0	0	0	0	1	0	0	0	14129	1000	35	3	621	3	SERPINA7	23	105279361	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	82291	105279361	49991199	2324	7698										
TBC1D8B	54885	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	106083404	106083404	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ggattccagaaacattaagaGgagaactctggatgcttttt	10	6	1	3	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TBC1D8B-133	NM_198881	exon9	c.G1480T	p.G494X	TTAAGAGGAGAAC	.	392	131	394	0	.	0	0	0	0	0	T	106083404	G	T	106083404	4	4	31	1	0	0	0	0	0	1	0	0	15663	1001	35	3	1514	3	TBC1D8B	23	106083404	Nonsense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	804043	106083404	49187156	2325	7699										
CLDN2	9075	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	106172103	106172103	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ccaaggcctggtcaacctccCaaagtcaagagtgagttcaa	9	12	3	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CLDN2-131	NM_001171092	exon2	c.C645A	p.P215P	ACCTCCCAAAGTC	.	130	40	104	1	.	0	0	0	0	0	A	106172103	C	A	106172103	2	1	31	1	0	0	0	0	0	0	0	1	3487	581	21	3		3	CLDN2	23	106172103	Silent	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	88699	106172103	49098457	2326	7700										
MORC4	79710	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	106185911	106185911	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ctgcagcagggattgcagcaGaggccacagaataaggcact	13	10	0	2	rs150736453	alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MORC4-131	NM_001085354	exon15	c.C2210A	p.S737Y	GCAGCAGAGGCCA	.	184	71	130	2	G|1.000;A|0.000	0	0	0	0	0	T	106185911	G	T	106185911	3	4	31	1	0	0	0	0	1	0	0	0	9732	942	33	3	615	3	MORC4	23	106185911	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	13808	106185911	49084649	2327	7701										
MORC4	79710	bcgsc.ca	37	chrX	106242923	106242923	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tcacctagcagctccgcgatGgcactgaagggtcgcgtgtg	14	12	1	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MORC4-131	NM_001085354	exon2	c.C159A	p.A53A	CGCGATGGCACTG	.	166	72	42	1	.	0	0	0	0	0	T	106242923	G	T	106242923	2	4	31	1	0	0	0	0	0	0	0	1	9732	1335	47	3		3	MORC4	23	106242923	Silent	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	57012	106242923	49027637	2328	7702										
COL4A6	1288	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	107420097	107420097	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gtccagagagggctggcaacCcagcgacccctggagagcct	14	14	0	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	COL4A6-199	NM_001847	exon28	c.G2663T	p.G888V	GGCAACCCAGCGA	.	166	60	123	0	.	0	0	0	0	0	A	107420097	C	A	107420097	3	1	31	1	0	0	0	0	1	0	0	0	3701	623	22	3	2484	3	COL4A6	23	107420097	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	1177174	107420097	47850463	2329	7703										
COL4A5	1287	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	107911571	107911571	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	caaaagggtgatggaggattAcctgggattccaggaaatcc	13	7	0	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	COL4A5-133	NM_000495	exon41	c.A3627T	p.L1209F	AGGATTACCTGGG	.	294	78	274	2	.	0	0	0	0	0	T	107911571	A	T	107911571	3	4	31	1	0	0	0	0	1	0	0	0	3700	388	14	5	3789	5	COL4A5	23	107911571	Missense_Mutation	SNP	A	TCGA-OR-A5KB-01A-11D-A30A-10	491474	107911571	47358989	2330	7704										
IRS4	8471	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	107976957	107976957	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	catgatctgaaggctttgaaGgtgatcccccatctccaggc	10	12	2	4	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	IRS4-623	NM_003604	exon1	c.C2618T	p.P873L	TTTGAAGGTGATC	.	117	35	137	0	.	0	0	0	0	0	A	107976957	G	A	107976957	3	1	31	1	0	0	0	0	1	0	0	0	7863	1000	35	3	1159	3	IRS4	23	107976957	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	65386	107976957	47293603	2331	7705										
GUCY2F	2986	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	108708517	108708517	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tgggttgttccttaggacccGgtagggggtgtgcttataag	16	6	0	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GUCY2F-540	NM_001522	exon3	c.C886A	p.R296R	GGACCCGGTAGGG	.	234	84	212	1	.	0	0	0	0	0	T	108708517	G	T	108708517	2	4	31	1	0	0	0	0	0	0	0	1	6919	1115	39	2		2	GUCY2F	23	108708517	Silent	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	731560	108708517	46562043	2332	7706										
AMMECR1	9949	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	109507776	109507776	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	atggcagaaaaagtacctatGcatccacgtaatcttttgtc	7	9	1	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	AMMECR1-130	NM_015365	exon2	c.C525G	p.C175W	ACCTATGCATCCA	.	375	105	334	0	.	0	0	0	0	0	C	109507776	G	C	109507776	3	2	31	1	0	0	0	0	1	0	0	0	578	1311	46	3	496	3	AMMECR1	23	109507776	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	799259	109507776	45762784	2333	7707										
RGAG1	57529	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	109696335	109696335	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	acagccacagcctctggaatGatgtcatccatgccacaagt	8	13	2	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	RGAG1-132	NM_020769	exon3	c.G2490C	p.M830I	TGGAATGATGTCA	.	187	60	175	0	.	0	0	0	0	0	C	109696335	G	C	109696335	3	2	31	1	0	0	0	0	1	0	0	0	13309	1290	45	3	2492	3	RGAG1	23	109696335	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	188559	109696335	45574225	2334	7708										
RGAG1	57529	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	109696663	109696663	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ctggacatatgtccactgcaCaaacaacagccatggtctct	7	13	1	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	RGAG1-132	NM_020769	exon3	c.C2818A	p.Q940K	ACTGCACAAACAA	.	153	48	157	3	.	0	0	0	0	0	A	109696663	C	A	109696663	3	1	31	1	0	0	0	0	1	0	0	0	13309	479	17	3	2820	3	RGAG1	23	109696663	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	328	109696663	45573897	2335	7709										
CAPN6	827	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	110490730	110490730	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gatgaccaaatatgggtttaCagctggaacaaagtgacata	10	6	0	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CAPN6-195	NM_014289	exon12	c.G1609T	p.V537L	GGTTTACAGCTGG	.	149	51	139	0	.	0	0	0	0	0	A	110490730	C	A	110490730	3	1	31	1	0	0	0	0	1	0	0	0	2636	478	17	3	324	3	CAPN6	23	110490730	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	794067	110490730	44779830	2336	7710										
DCX	1641	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	110653544	110653544	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	agtgggcgctgtgagtggggCtaggcaacccattcatccgg	16	10	1	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DCX-554	NM_000555	exon2	c.G326A	p.S109N	GTGGGGCTAGGCA	.	227	72	197	0	.	0	0	0	0	0	T	110653544	C	T	110653544	3	4	31	1	0	0	0	0	1	0	0	0	4324	797	28	3	1038	3	DCX	23	110653544	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	162814	110653544	44617016	2337	7711										
ALG13	79868	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	110964940	110964940	+	Splice_Site	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ttggttggacagcagaaaagGtaaagaaatatcaacaggat	11	4	1	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ALG13-130	NM_001257230	exon12	c.1123+1G>T	.	GAAAAGGTAAAGA	.	125	24	126	0	.	0	0	0	0	0	T	110964940	G	T	110964940	5	4	31	1	0	0	0	0	0	0	1	0	515	1275	44	3	1624	3	ALG13	23	110964940	Splice_Site	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	311396	110964940	44305620	2338	7712										
TRPC5	7224	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	111025191	111025191	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ttctcaagttgcgccttctcCgtctaccgtcagggtctctt	8	14	5	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TRPC5-130	NM_012471	exon8	c.G2072A	p.R691Q	CTTCTCCGTCTAC	.	159	49	137	2	.	0	0	0	0	0	T	111025191	C	T	111025191	3	4	31	1	0	0	0	0	1	0	0	0	16620	652	23	1	865	1	TRPC5	23	111025191	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	60251	111025191	44245369	2339	7713										
ZCCHC16	340595	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	111698228	111698228	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tctccaaatctctaatcctgCaaatgatgcccagatcaaac	4	13	3	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ZCCHC16-91	NM_001004308	exon3	c.C272A	p.A91E	ATCCTGCAAATGA	.	153	36	139	1	.	0	0	0	0	0	A	111698228	C	A	111698228	3	1	31	1	0	0	0	0	1	0	0	0	17621	710	25	3	274	3	ZCCHC16	23	111698228	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	673037	111698228	43572332	2340	7714										
ZCCHC16	340595	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	111698591	111698591	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tccagacctgatcactcagtGcattcagttggacaagaaac	8	11	3	3	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ZCCHC16-91	NM_001004308	exon3	c.G635C	p.C212S	CTCAGTGCATTCA	.	333	114	325	0	.	0	0	0	0	0	C	111698591	G	C	111698591	3	2	31	1	0	0	0	0	1	0	0	0	17621	1319	46	3	637	3	ZCCHC16	23	111698591	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	363	111698591	43571969	2341	7715										
LUZP4	51213	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	114540824	114540824	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	agaagaatcaaggccagtcaGaggggaaccagcatcaatca	11	9	4	3	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	LUZP4-132	NM_016383	exon4	c.G397C	p.E133Q	CAGTCAGAGGGGA	.	302	106	258	0	.	0	0	0	0	0	C	114540824	G	C	114540824	3	2	31	1	0	0	0	0	1	0	0	0	9115	943	33	3	411	3	LUZP4	23	114540824	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	2842233	114540824	40729736	2342	7716										
SLC6A14	11254	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chrX	115568956	115568956	+	Splice_Site	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gttgatattttttcttccccAgaaagtgtcggcttcatcag	8	9	3	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SLC6A14-133	NM_007231	exon2	c.49-2A>C	.	TTCCCCAGAAAGT	.	61	13	67	0	.	0	0	0	0	0	C	115568956	A	C	115568956	5	2	31	1	0	0	0	0	0	0	1	0	14712	202	7	5	53	5	SLC6A14	23	115568956	Splice_Site	SNP	A	TCGA-OR-A5KB-01A-11D-A30A-10	1028132	115568956	39701604	2343	7717										
CXorf61	203413	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	115593996	115593996	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ggcacacagaatgctgctcgCtaggagtaaatagaagttca	11	8	1	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CXorf61-130	NM_001017978	exon1	c.G22A	p.A8T	TGCTCGCTAGGAG	.	405	155	367	2	.	0	0	0	0	0	T	115593996	C	T	115593996	3	4	31	1	0	0	0	0	1	0	0	0	4122	797	28	3	327	3	CXorf61	23	115593996	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	25040	115593996	39676564	2344	7718										
KLHL13	90293	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	117043644	117043644	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	taatggcagtcctgtctgacTgcataactggctgcatatat	9	9	1	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	KLHL13-556	NM_001168299	exon6	c.A995T	p.Q332L	TCTGACTGCATAA	.	190	71	203	0	.	0	0	0	0	0	A	117043644	T	A	117043644	3	1	31	1	0	0	0	0	1	0	0	0	8390	1580	55	5	993	5	KLHL13	23	117043644	Missense_Mutation	SNP	T	TCGA-OR-A5KB-01A-11D-A30A-10	1449648	117043644	38226916	2345	7719										
KLHL13	90293	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	117043657	117043657	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gtctgactgcataactggctGcatatatggcatcatttggt	10	8	2	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	KLHL13-556	NM_001168299	exon6	c.C982A	p.Q328K	CTGGCTGCATATA	.	195	78	201	0	.	0	0	0	0	0	T	117043657	G	T	117043657	3	4	31	1	0	0	0	0	1	0	0	0	8390	1328	46	3	1006	3	KLHL13	23	117043657	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	13	117043657	38226903	2346	7720										
DOCK11	139818	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	117700598	117700598	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gcaagtttggaaaggagcatGcatccggaactgatgaaggt	14	6	0	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DOCK11-93	NM_144658	exon9	c.G933T	p.M311I	GAGCATGCATCCG	.	356	129	292	0	.	0	0	0	0	0	T	117700598	G	T	117700598	3	4	31	1	0	0	0	0	1	0	0	0	4697	1319	46	3	967	3	DOCK11	23	117700598	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	656941	117700598	37569962	2347	7721										
ZCCHC12	170261	ucsc.edu;bcgsc.ca	37	chrX	117959692	117959692	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gctccagaacgctattcaggCaggcattatagctgagaaag	11	9	1	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ZCCHC12-131	NM_173798	exon4	c.C485A	p.A162E	TTCAGGCAGGCAT	.	228	86	216	2	.	0	0	0	0	0	A	117959692	C	A	117959692	3	1	31	1	0	0	0	0	1	0	0	0	17618	710	25	3	487	3	ZCCHC12	23	117959692	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	259094	117959692	37310868	2348	7722										
KIAA1210	57481	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	118215375	118215375	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gacaggctcaattggctcaaCtgggttctggaacttggctg	13	9	3	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	KIAA1210-67	NM_020721	exon14	c.G5047C	p.V1683L	GCTCAACTGGGTT	.	185	64	148	0	.	0	0	0	0	0	G	118215375	C	G	118215375	3	3	31	1	0	0	0	0	1	0	0	0	8235	565	20	3	86	3	KIAA1210	23	118215375	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	255683	118215375	37055185	2349	7723										
KIAA1210	57481	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	118221793	118221793	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ctcgaaatttgaggacagttGctggactttatttcccacag	9	9	0	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	KIAA1210-67	NM_020721	exon11	c.C3400A	p.Q1134K	ACAGTTGCTGGAC	.	142	34	146	0	.	0	0	0	0	0	T	118221793	G	T	118221793	3	4	31	1	0	0	0	0	1	0	0	0	8235	1328	46	3	1745	3	KIAA1210	23	118221793	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	6418	118221793	37048767	2350	7724										
KIAA1210	57481	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	118222705	118222705	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gcatctgaggtccagctcctCctcagagctgctcaagtcct	9	15	3	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	KIAA1210-67	NM_020721	exon11	c.G2488T	p.E830X	GCTCCTCCTCAGA	.	19	6	33	0	.	0	0	0	0	0	A	118222705	C	A	118222705	4	1	31	1	0	0	0	0	0	1	0	0	8235	864	30	3	2657	3	KIAA1210	23	118222705	Nonsense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	912	118222705	37047855	2351	7725										
PGRMC1	10857	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chrX	118370647	118370647	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	accaaaggccgcaaattctaCgggcccggtacgcggccggc	13	15	1	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PGRMC1-130	NM_006667	exon1	c.C321A	p.Y107X	ATTCTACGGGCCC	.	245	79	121	0	.	0	0	0	0	0	A	118370647	C	A	118370647	4	1	31	1	0	0	0	0	0	1	0	0	11835	547	19	2	323	2	PGRMC1	23	118370647	Nonsense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	147942	118370647	36899913	2352	7726										
PGRMC1	10857	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	118374361	118374361	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	aagcactgaaggatgagtacGatgacctttctgacctcact	9	10	2	4	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PGRMC1-130	NM_006667	exon2	c.G418C	p.D140H	GAGTACGATGACC	.	151	43	139	0	.	0	0	0	0	0	C	118374361	G	C	118374361	3	2	31	1	0	0	0	0	1	0	0	0	11835	1058	37	2	424	2	PGRMC1	23	118374361	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	3714	118374361	36896199	2353	7727										
NKRF	55922	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	118723944	118723944	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tacttcactctctagaatcaCtttgcatttccagcggaggc	7	12	3	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	NKRF-131	NM_001173487	exon4	c.G1489C	p.V497L	GAATCACTTTGCA	.	54	22	55	0	.	0	0	0	0	0	G	118723944	C	G	118723944	3	3	31	1	0	0	0	0	1	0	0	0	10476	565	20	3	632	3	NKRF	23	118723944	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	349583	118723944	36546616	2354	7728										
NKRF	55922	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	118723961	118723962	+	Missense_Mutation	DNP	AG	AG	TT													0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tcactttgcatttccagcggAggcctgtcatcctttcatag					novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	AG	AG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	NKRF-131	NM_001173487	exon4	c.C1471A	p.L491N	AGCGGAGGCCTGT	.	54	5	48	0	.	0	0	0	0	0	TT	118723962	AG	TT	118723961	3	4	31	1	0	0	0	0	1	0	0	0	10476	304	11	5	649	5	NKRF	23	118723961	Missense_Mutation	DNP	AG	TCGA-OR-A5KB-01A-11D-A30A-10	17	118723961	36546599	2355	7729										
SEPT6	23157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	118763333	118763333	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tgagcctccagcctgggagcCctgggactggagcagctcag	15	13	1	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SEPT6-969	NM_145802	exon9	c.G1228A	p.G410S	GGGAGCCCTGGGA	.	106	17	75	0	.	0	0	0	0	0	T	118763333	C	T	118763333	3	4	31	1	0	0	0	0	1	0	0	0	14103	623	22	3	106	3	SEPT6	23	118763333	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	39372	118763333	36507227	2356	7730										
AKAP14	158798	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	119048832	119048832	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	accatgaaggtctccaaaacCaaaccaccggtaagttcttc	6	13	2	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	AKAP14-226	NM_178813	exon5	c.C432A	p.T144T	CAAAACCAAACCA	.	134	36	103	0	.	0	0	0	0	0	A	119048832	C	A	119048832	2	1	31	1	0	0	0	0	0	0	0	1	450	581	21	3		3	AKAP14	23	119048832	Silent	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	285499	119048832	36221728	2357	7731										
CT47B1	643311	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chrX	120009189	120009189	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cccgccgccgggtaccgacgGgtggccaccgccaagtcgaa	14	17	0	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	.	NM_001145718	exon1	c.C336G	p.T112T	CCGACGGGTGGCC	.	638	230	416	1	.	0	0	0	0	0	C	120009189	G	C	120009189	2	2	31	1	0	0	0	0	0	0	0	1	3995	1219	43	3		3	CT47B1	23	120009189	Silent	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	960357	120009189	35261371	2358	7732										
GRIA3	2892	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	122532571	122532571	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ggcagcgagtagatgtgtccCggagaggaagtgctggagac	18	7	0	3	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GRIA3-134	NM_000828	exon7	c.C997A	p.R333R	GTGTCCCGGAGAG	.	218	64	202	0	.	0	0	0	0	0	A	122532571	C	A	122532571	2	1	31	1	0	0	0	0	0	0	0	1	6790	643	23	2		2	GRIA3	23	122532571	Silent	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	2523382	122532571	32737989	2359	7733										
THOC2	57187	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	122747368	122747368	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ctttctcatttggataaggaGattcacaaggactttcactt	7	8	3	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	THOC2-133	NM_001081550	exon36	c.C4559T	p.S1520F	TAAGGAGATTCAC	.	27	15	20	0	.	0	0	0	0	0	A	122747368	G	A	122747368	3	1	31	1	0	0	0	0	1	0	0	0	15902	942	33	3	234	3	THOC2	23	122747368	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	214797	122747368	32523192	2360	7734										
THOC2	57187	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	122755031	122755031	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tttcaggctctggaatatctGatctgggaacaggtgatttc	11	7	4	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	THOC2-133	NM_001081550	exon31	c.C4193G	p.S1398X	ATATCTGATCTGG	.	69	16	66	0	.	0	0	0	0	0	C	122755031	G	C	122755031	4	2	31	1	0	0	0	0	0	1	0	0	15902	1294	45	3	620	3	THOC2	23	122755031	Nonsense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	7663	122755031	32515529	2361	7735										
DCAF12L2	340578	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	125299535	125299535	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cgtgatgtggcctgactgcaCgtccaccacaaacagcgtat	10	13	0	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DCAF12L2-113	NM_001013628	exon1	c.G373T	p.V125L	ACTGCACGTCCAC	.	452	154	319	0	.	0	0	0	0	0	A	125299535	C	A	125299535	3	1	31	1	0	0	0	0	1	0	0	0	4271	536	19	2	1022	2	DCAF12L2	23	125299535	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	2544504	125299535	29971025	2362	7736										
DCAF12L1	139170	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	125686226	125686226	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tggcctgactccacgtccacCacgaaaagcgtgttacactt	8	14	0	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DCAF12L1-132	NM_178470	exon1	c.G366C	p.V122V	GTCCACCACGAAA	.	629	200	431	1	.	0	0	0	0	0	G	125686226	C	G	125686226	2	3	31	1	0	0	0	0	0	0	0	1	4270	581	21	3		3	DCAF12L1	23	125686226	Silent	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	386691	125686226	29584334	2363	7737										
ACTRT1	139741	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	127185766	127185766	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gcatagagcgctgccaccgcAtgattagacaggtagaaacc	11	11	0	4	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ACTRT1-133	NM_138289	exon1	c.T420A	p.H140Q	CACCGCATGATTA	.	219	68	208	0	.	0	0	0	0	0	T	127185766	A	T	127185766	3	4	31	1	0	0	0	0	1	0	0	0	218	214	8	5	714	5	ACTRT1	23	127185766	Missense_Mutation	SNP	A	TCGA-OR-A5KB-01A-11D-A30A-10	1499540	127185766	28084794	2364	7738										
ACTRT1	139741	ucsc.edu;bcgsc.ca	37	chrX	127186027	127186027	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tcttgccccacgaagtacttCtgattaagtcttgctaaagg	8	10	3	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ACTRT1-133	NM_138289	exon1	c.G159A	p.Q53Q	GTACTTCTGATTA	.	293	95	276	3	.	0	0	0	0	0	T	127186027	C	T	127186027	2	4	31	1	0	0	0	0	0	0	0	1	218	912	32	3		3	ACTRT1	23	127186027	Silent	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	261	127186027	28084533	2365	7739										
SMARCA1	6594	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	128649928	128649928	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tgttttccgactctcagacaGtagctcttcatcttcttctt	5	12	6	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SMARCA1-230	NM_139035	exon4	c.C472A	p.L158M	CAGACAGTAGCTC	.	151	63	137	0	.	0	0	0	0	0	T	128649928	G	T	128649928	3	4	31	1	0	0	0	0	1	0	0	0	14803	1020	36	3	2776	3	SMARCA1	23	128649928	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	1463901	128649928	26620632	2366	7740										
XPNPEP2	7512	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	128888456	128888456	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ccccaactccaggtgcgggaCgctgtggctgtgatccggta	14	13	0	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	XPNPEP2-130	NM_003399	exon12	c.C1116T	p.D372D	GCGGGACGCTGTG	.	131	38	95	0	.	0	0	0	0	0	T	128888456	C	T	128888456	2	4	31	1	0	0	0	0	0	0	0	1	17481	535	19	1		1	XPNPEP2	23	128888456	Silent	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	238528	128888456	26382104	2367	7741										
ZDHHC9	51114	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	128940383	128940383	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ctgcctcctgtggtggctctGggggctctggaggtggcatc	17	11	2	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ZDHHC9-131	NM_001008222	exon10	c.C1058A	p.P353Q	GGCTCTGGGGGCT	.	96	29	85	0	.	0	0	0	0	0	T	128940383	G	T	128940383	3	4	31	1	0	0	0	0	1	0	0	0	17659	1348	47	3	40	3	ZDHHC9	23	128940383	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	51927	128940383	26330177	2368	7742										
UTP14A	10813	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	129053172	129053172	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	caagaactcccctggagcagGaaattttcaacctcctccat	6	14	1	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	UTP14A-132	NM_006649	exon7	c.G559A	p.E187K	GAGCAGGAAATTT	.	173	33	146	0	.	0	0	0	0	0	A	129053172	G	A	129053172	3	1	31	1	0	0	0	0	1	0	0	0	17133	1175	41	3	585	3	UTP14A	23	129053172	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	112789	129053172	26217388	2369	7743										
BCORL1	63035	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	129147234	129147235	+	Missense_Mutation	DNP	GG	GG	TT													0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cccgccggagtaaaggctttGgactctcggcaaggtgttgg					novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	GG	GG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	BCORL1-294	NM_021946	exon3	c.G487T	p.LD162FY	GCTTTGGACTCTC	.	237	10	208	0	.	0	0	0	0	0	TT	129147235	GG	TT	129147234	3	4	31	1	0	0	0	0	1	0	0	0	1388	1339	47	3	496	3	BCORL1	23	129147234	Missense_Mutation	DNP	GG	TCGA-OR-A5KB-01A-11D-A30A-10	94062	129147234	26123326	2370	7744										
BCORL1	63035	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	129148844	129148844	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gatcgtgaggaatggggaccCgagcacctgggtgaagaact	16	8	0	3	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	BCORL1-294	NM_021946	exon3	c.C2096A	p.P699Q	GGGACCCGAGCAC	.	229	76	188	1	.	0	0	0	0	0	A	129148844	C	A	129148844	3	1	31	1	0	0	0	0	1	0	0	0	1388	652	23	2	2106	2	BCORL1	23	129148844	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	1610	129148844	26121716	2371	7745										
BCORL1	63035	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	129154972	129154972	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ctccacagtgccggaagctgCccagtgacccccaggaatcc	10	17	0	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	BCORL1-294	NM_021946	exon4	c.C3454A	p.P1152T	AAGCTGCCCAGTG	.	174	66	153	1	.	0	0	0	0	0	A	129154972	C	A	129154972	3	1	31	1	0	0	0	0	1	0	0	0	1388	739	26	3	3468	3	BCORL1	23	129154972	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	6128	129154972	26115588	2372	7746										
BCORL1	63035	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	129173157	129173157	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gacaacctggagaccatctgGctcctgctgtcctatggggc	12	13	1	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	BCORL1-294	NM_021946	exon9	c.G4518T	p.W1506C	CATCTGGCTCCTG	.	148	41	130	0	.	0	0	0	0	0	T	129173157	G	T	129173157	3	4	31	1	0	0	0	0	1	0	0	0	1388	1212	42	3	4778	3	BCORL1	23	129173157	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	18185	129173157	26097403	2373	7747										
AIFM1	9131	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	129289211	129289211	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gccatctttcccagaagcacCtgtagatgctagtgatctag	9	11	2	3	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	AIFM1-586	NM_145812	exon2	c.G157T	p.G53C	AAGCACCTGTAGA	.	227	82	164	0	.	0	0	0	0	0	A	129289211	C	A	129289211	3	1	31	1	0	0	0	0	1	0	0	0	426	681	24	3	1744	3	AIFM1	23	129289211	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	116054	129289211	25981349	2374	7748										
ENOX2	10495	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	129843245	129843245	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cctatttcgtagacccacagCcatctaaaatctctttgcat	4	13	2	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ENOX2-131	NM_182314	exon4	c.G21T	p.W7C	CCACAGCCATCTA	.	192	63	159	0	.	0	0	0	0	0	A	129843245	C	A	129843245	3	1	31	1	0	0	0	0	1	0	0	0	5140	740	26	3	1863	3	ENOX2	23	129843245	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	554034	129843245	25427315	2375	7749										
ARHGAP36	158763	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	130222738	130222738	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gagaaggaggccaaaactggCgtcagctacttctttcctta	10	10	2	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ARHGAP36-133	NM_144967	exon12	c.C1623G	p.G541G	AACTGGCGTCAGC	.	116	37	125	0	.	0	0	0	0	0	G	130222738	C	G	130222738	2	3	31	1	0	0	0	0	0	0	0	1	883	755	27	2		2	ARHGAP36	23	130222738	Silent	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	379493	130222738	25047822	2376	7750										
IGSF1	3547	ucsc.edu;bcgsc.ca	37	chrX	130419880	130419880	+	Silent	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	aaggtcttgtgggaagggcgGatccaggtcatctgtgtctt	15	7	4	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	IGSF1-133	NM_001555	exon4	c.C240A	p.I80I	AGGGCGGATCCAG	.	256	87	194	2	.	0	0	0	0	0	T	130419880	G	T	130419880	2	4	31	1	0	0	0	0	0	0	0	1	7617	1164	41	3		3	IGSF1	23	130419880	Silent	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	197142	130419880	24850680	2377	7751										
OR13H1	347468	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	130678317	130678318	+	Missense_Mutation	DNP	CT	CT	AA													0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cattgtttctctacccatccCtacctctcttatccccgatg					novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	CT	CT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	OR13H1-108	NM_001004486	exon1	c.T271A	p.Y91N	CATCCCTACCTCT	.	185	10	204	0	.	0	0	0	0	0	AA	130678318	CT	AA	130678317	3	1	31	1	0	0	0	0	1	0	0	0	10972	668	24	3	272	3	OR13H1	23	130678317	Missense_Mutation	DNP	CT	TCGA-OR-A5KB-01A-11D-A30A-10	258437	130678317	24592243	2378	7752										
FRMD7	90167	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	131214283	131214283	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	catattccaaaagttgccttTgggttcgtccactatcataa	6	10	1	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FRMD7-228	NM_194277	exon10	c.A917G	p.Q306R	TGCCTTTGGGTTC	.	205	60	185	1	.	0	0	0	0	0	C	131214283	T	C	131214283	3	2	31	1	0	0	0	0	1	0	0	0	6074	1812	63	4	1239	4	FRMD7	23	131214283	Missense_Mutation	SNP	T	TCGA-OR-A5KB-01A-11D-A30A-10	535966	131214283	24056277	2379	7753										
RAP2C	57826	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	131348263	131348263	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gggatgaatagttcatttgcCtgacgatctcagcaaaaagt	10	7	2	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	RAP2C-848	NM_021183	exon3	c.G485T	p.R162M	ATTTGCCTGACGA	.	447	150	417	0	.	0	0	0	0	0	A	131348263	C	A	131348263	3	1	31	1	0	0	0	0	1	0	0	0	13077	681	24	3	70	3	RAP2C	23	131348263	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	133980	131348263	23922297	2380	7754										
DDX26B	203522	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	134679347	134679347	+	Splice_Site	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ttgtaaatgtttggtttgcaGgctggttggaaggaaaatca	13	3	1	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DDX26B-226	NM_182540	exon3	c.190-1G>T	.	TTTGCAGGCTGGT	.	138	49	117	0	.	0	0	0	0	0	T	134679347	G	T	134679347	5	4	31	1	0	0	0	0	0	0	1	0	4359	1014	35	3	199	3	DDX26B	23	134679347	Splice_Site	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	3331084	134679347	20591213	2381	7755										
DDX26B	203522	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	134679497	134679498	+	Splice_Site	DNP	GG	GG	TT													0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ggaatagacaattatggacaGgtaaaaataatttgagtgag					novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	GG	GG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DDX26B-226	NM_182540	exon3	c.339+1G>T	.	GGACAGGTAAAAA	.	87	2	113	0	.	0	0	0	0	0	TT	134679498	GG	TT	134679497	5	4	31	1	0	0	0	0	0	0	1	0	4359	1014	35	3	349	3	DDX26B	23	134679497	Splice_Site	DNP	GG	TCGA-OR-A5KB-01A-11D-A30A-10	150	134679497	20591063	2382	7756										
DDX26B	203522	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	134707987	134707987	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ttattgttggacaagatgaaGgtaaaataactgtgaaatac	9	3	0	3	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DDX26B-226	NM_182540	exon12	c.G1630C	p.D544H	GATGAAGGTAAAA	.	208	65	242	0	.	0	0	0	0	0	C	134707987	G	C	134707987	3	2	31	1	0	0	0	0	1	0	0	0	4359	1014	35	3	1676	3	DDX26B	23	134707987	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	28490	134707987	20562573	2383	7757										
SAGE1	55511	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	134992242	134992242	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	agattaaaaatggccaagcaGcatccgataatgtcttctcg	8	9	2	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SAGE1-133	NM_018666	exon15	c.G1777T	p.A593S	CAAGCAGCATCCG	.	270	90	295	0	.	0	0	0	0	0	T	134992242	G	T	134992242	3	4	31	1	0	0	0	0	1	0	0	0	13844	971	34	3	1831	3	SAGE1	23	134992242	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	284255	134992242	20278318	2384	7758										
SLC9A6	10479	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	135098854	135098854	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	aatttcatcttctcctacatGgggctgacactgttcacctt	6	12	4	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SLC9A6-131	NM_001042537	exon10	c.G1287T	p.M429I	CTACATGGGGCTG	.	100	40	101	0	.	0	0	0	0	0	T	135098854	G	T	135098854	3	4	31	1	0	0	0	0	1	0	0	0	14753	1348	47	3	1325	3	SLC9A6	23	135098854	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	106612	135098854	20171706	2385	7759										
SLC9A6	10479	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	135112310	135112310	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gggttggtgttgattcagacCaagaacacttggtaaatatg	12	5	1	3	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SLC9A6-131	NM_001042537	exon13	c.C1636A	p.Q546K	TCAGACCAAGAAC	.	181	69	150	2	.	0	0	0	0	0	A	135112310	C	A	135112310	3	1	31	1	0	0	0	0	1	0	0	0	14753	595	21	3	1686	3	SLC9A6	23	135112310	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	13456	135112310	20158250	2386	7760										
FHL1	2273	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	135288629	135288629	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ctgccactactgcagggatcCcttgcaggggaagaagtatg	13	10	0	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FHL1-130	NM_001159701	exon2	c.C125G	p.P42R	GGGATCCCTTGCA	.	447	77	439	1	.	0	0	0	0	0	G	135288629	C	G	135288629	3	3	31	1	0	0	0	0	1	0	0	0	5897	623	22	3	157	3	FHL1	23	135288629	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	176319	135288629	19981931	2387	7761										
MAP7D3	79649	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	135313958	135313958	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ggtgcttccaggctcgcctcCggggatgctactatgctcac	12	14	1	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MAP7D3-110	NM_024597	exon8	c.G1158A	p.P386P	CGCCTCCGGGGAT	.	137	60	120	0	.	0	0	0	0	0	T	135313958	C	T	135313958	2	4	31	1	0	0	0	0	0	0	0	1	9297	639	23	1		1	MAP7D3	23	135313958	Silent	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	25329	135313958	19956602	2388	7762										
GPR112	139378	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	135428212	135428212	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tgacaccaagggagactgttGttccatcagtagatataata	9	7	1	3	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GPR112-183	NM_153834	exon6	c.G2347C	p.V783L	ACTGTTGTTCCAT	.	250	87	286	0	.	0	0	0	0	0	C	135428212	G	C	135428212	3	2	31	1	0	0	0	0	1	0	0	0	6649	1377	48	3	2357	3	GPR112	23	135428212	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	114254	135428212	19842348	2389	7763										
GPR112	139378	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	135430562	135430562	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gtctgagatgtcctcaatacCagttaataactctgctttca	6	10	4	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GPR112-183	NM_153834	exon6	c.C4697A	p.P1566Q	CAATACCAGTTAA	.	241	72	224	1	.	0	0	0	0	0	A	135430562	C	A	135430562	3	1	31	1	0	0	0	0	1	0	0	0	6649	594	21	3	4707	3	GPR112	23	135430562	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	2350	135430562	19839998	2390	7764										
GPR112	139378	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	135474475	135474475	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tcattcaaaacttagctgacCcagtggttatcactctgcag	7	11	4	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GPR112-183	NM_153834	exon17	c.C7996A	p.P2666T	GCTGACCCAGTGG	.	302	80	294	1	.	0	0	0	0	0	A	135474475	C	A	135474475	3	1	31	1	0	0	0	0	1	0	0	0	6649	623	22	3	8050	3	GPR112	23	135474475	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	43913	135474475	19796085	2391	7765										
FGF13	2258	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	137790993	137790993	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cacttactgtaagtgctgtcCtcatctttggtgccatcaat	7	11	3	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FGF13-626	NM_001139500	exon4	c.G315T	p.E105D	GCTGTCCTCATCT	.	131	35	126	2	.	0	0	0	0	0	A	137790993	C	A	137790993	3	1	31	1	0	0	0	0	1	0	0	0	5861	680	24	3	468	3	FGF13	23	137790993	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	2316518	137790993	17479567	2392	7766										
MCF2	4168	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	138699719	138699719	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ggtcctgctgagttgtatccGttttgcttttatctcattaa	8	8	1	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MCF2-227	NM_001171876	exon11	c.C1132A	p.R378R	GTATCCGTTTTGC	.	115	35	112	0	.	0	0	0	0	0	T	138699719	G	T	138699719	2	4	31	1	0	0	0	0	0	0	0	1	9406	1144	40	2		2	MCF2	23	138699719	Silent	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	908726	138699719	16570841	2393	7767										
MAGEC1	9947	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	140993233	140993233	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ctgctgggatgccgagtcttCtccagagttcctctgagagt	12	11	3	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MAGEC1-133	NM_005462	exon4	c.C43G	p.L15V	AGTCTTCTCCAGA	.	114	29	99	0	.	0	0	0	0	0	G	140993233	C	G	140993233	3	3	31	1	0	0	0	0	1	0	0	0	9208	913	32	3	49	3	MAGEC1	23	140993233	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	2293514	140993233	14277327	2394	7768										
MAGEC2	51438	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	141291129	141291129	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tcatcatcactaccctcatcGgtgaggcctactgtgtttgc	8	13	4	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MAGEC2-193	NM_016249	exon3	c.C645A	p.T215T	CTCATCGGTGAGG	.	261	101	253	0	.	0	0	0	0	0	T	141291129	G	T	141291129	2	4	31	1	0	0	0	0	0	0	0	1	9209	1103	39	2		2	MAGEC2	23	141291129	Silent	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	297896	141291129	13979431	2395	7769										
SPANXN3	139067	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	142605191	142605191	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	aggggctcttcgtcttctccCcattggtgctggaagttggc	13	11	3	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SPANXN3-132	NM_001009609	exon1	c.G29T	p.G10V	TTCTCCCCATTGG	.	118	31	111	0	.	0	0	0	0	0	A	142605191	C	A	142605191	3	1	31	1	0	0	0	0	1	0	0	0	15029	623	22	3	404	3	SPANXN3	23	142605191	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	1314062	142605191	12665369	2396	7770										
SLITRK4	139065	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	142717517	142717517	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ctgcaaatttggcatggagtCaaaggtgcctgctgagattt	12	7	1	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SLITRK4-193	NM_001184750	exon2	c.G1408A	p.D470N	TGGAGTCAAAGGT	.	165	66	168	0	.	0	0	0	0	0	T	142717517	C	T	142717517	3	4	31	1	0	0	0	0	1	0	0	0	14780	826	29	3	1109	3	SLITRK4	23	142717517	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	112326	142717517	12553043	2397	7771										
UBE2NL	389898	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	142967266	142967266	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tgctggcagagccagttcctGgcatcaaagcagaaccagat	11	11	1	3	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	UBE2NL-226	NM_001012989	exon1	c.G64T	p.G22C	GTTCCTGGCATCA	.	211	79	212	1	.	0	0	0	0	0	T	142967266	G	T	142967266	3	4	31	1	0	0	0	0	1	0	0	0	16905	1348	47	3	66	3	UBE2NL	23	142967266	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	249749	142967266	12303294	2398	7772										
SLITRK2	84631	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	144904123	144904123	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gttagcctgctccagcccccCcagtatcgaatctatcagct	7	16	2	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SLITRK2-136	NM_001144005	exon5	c.C180A	p.P60P	GCCCCCCCAGTAT	.	185	64	188	0	.	0	0	0	0	0	A	144904123	C	A	144904123	2	1	31	1	0	0	0	0	0	0	0	1	14778	610	22	3		3	SLITRK2	23	144904123	Silent	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	1936857	144904123	10366437	2399	7773										
SLITRK2	84631	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	144905093	144905093	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	caaagaaactctacctaacaGggaactatcttcaaactgtc	5	11	3	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SLITRK2-136	NM_001144005	exon5	c.G1150T	p.G384W	CTAACAGGGAACT	.	206	87	202	1	.	0	0	0	0	0	T	144905093	G	T	144905093	3	4	31	1	0	0	0	0	1	0	0	0	14778	1000	35	3	1152	3	SLITRK2	23	144905093	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	970	144905093	10365467	2400	7774										
SLITRK2	84631	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	144905170	144905170	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ttactgcacttaggaaacaaCaggattgcagtcattcagga	9	8	2	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SLITRK2-136	NM_001144005	exon5	c.C1227A	p.N409K	AAACAACAGGATT	.	257	66	242	0	.	0	0	0	0	0	A	144905170	C	A	144905170	3	1	31	1	0	0	0	0	1	0	0	0	14778	477	17	3	1229	3	SLITRK2	23	144905170	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	77	144905170	10365390	2401	7775										
FMR1	2332	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	147030346	147030346	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gtggatggtcagcaaccactCgtgaatggagtaccctaaac	11	10	1	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FMR1-133	NM_001185075	exon16	c.C1610A	p.S537X	ACCACTCGTGAAT	.	216	60	192	0	.	0	0	0	0	0	A	147030346	C	A	147030346	4	1	31	1	0	0	0	0	0	1	0	0	5979	893	31	2	1947	2	FMR1	23	147030346	Nonsense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	2125176	147030346	8240214	2402	7776										
AFF2	2334	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	148049222	148049222	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	aagcacaaagctgatgcactGgtaagtttcctttttctcat	7	9	1	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	AFF2-135	NM_002025	exon15	c.G3267T	p.L1089L	TGCACTGGTAAGT	.	77	28	65	0	.	0	0	0	0	0	T	148049222	G	T	148049222	2	4	31	1	0	0	0	0	0	0	0	1	357	1362	47	3		3	AFF2	23	148049222	Silent	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	1018876	148049222	7221338	2403	7777										
IDS	3423	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	148582538	148582538	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gtggaaaagaccagctatacGgagaatcatcggtatggtta	12	6	1	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	IDS-130	NM_006123	exon4	c.C449A	p.P150Q	CTATACGGAGAAT	.	90	26	83	0	.	0	0	0	0	0	T	148582538	G	T	148582538	3	4	31	1	0	0	0	0	1	0	0	0	7524	1116	39	2	1257	2	IDS	23	148582538	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	533316	148582538	6688022	2404	7778										
MAGEA11	4110	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	148797322	148797322	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	caggagaacccagaggatcaCtggaggagaacaagtgtaag	14	7	1	3	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MAGEA11-132	NM_005366	exon4	c.C251A	p.T84N	GGATCACTGGAGG	.	227	81	206	0	.	0	0	0	0	0	A	148797322	C	A	148797322	3	1	31	1	0	0	0	0	1	0	0	0	9193	565	20	3	274	3	MAGEA11	23	148797322	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	214784	148797322	6473238	2405	7779										
MAMLD1	10046	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	149639349	149639349	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	agcagcagcagcagcagcagCaagcaaatgtgatctttaag	11	9	1	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MAMLD1-130	NM_005491	exon3	c.C1504A	p.Q502K	CAGCAGCAAGCAA	.	294	104	250	0	.	0	0	0	0	0	A	149639349	C	A	149639349	3	1	31	1	0	0	0	0	1	0	0	0	9236	711	25	3	1514	3	MAMLD1	23	149639349	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	842027	149639349	5631211	2406	7780										
MTM1	4534	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	149818249	149818249	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	acgccgaacttttcttcttaGacattcataatattcatgtt	4	9	4	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MTM1-228	NM_000252	exon10	c.G928C	p.D310H	TTCTTAGACATTC	.	174	54	152	0	.	0	0	0	0	0	C	149818249	G	C	149818249	3	2	31	1	0	0	0	0	1	0	0	0	9965	942	33	3	962	3	MTM1	23	149818249	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	178900	149818249	5452311	2407	7781										
MTMR1	8776	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	149905230	149905230	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gctctccaatgtggatgggaCgcattggctggaatatataa	12	7	1	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MTMR1-131	NM_003828	exon10	c.C1220A	p.T407K	ATGGGACGCATTG	.	148	49	170	0	.	0	0	0	0	0	A	149905230	C	A	149905230	3	1	31	1	0	0	0	0	1	0	0	0	9966	536	19	2	1258	2	MTMR1	23	149905230	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	86981	149905230	5365330	2408	7782										
GPR50	9248	ucsc.edu;bcgsc.ca	37	chrX	150348568	150348568	+	Nonsense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tacattggcaccatcgagtaCgatcctcgcacctacacctg	7	15	0	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GPR50-176	NM_004224	exon2	c.C513G	p.Y171X	CGAGTACGATCCT	.	274	97	251	3	.	0	0	0	0	0	G	150348568	C	G	150348568	4	3	31	1	0	0	0	0	0	1	0	0	6717	547	19	2	519	2	GPR50	23	150348568	Nonsense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	443338	150348568	4921992	2409	7783										
GPR50	9248	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	150349375	150349375	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tctgccactgtctaccctaaGcctgcctctgtccatttcaa	5	16	4	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GPR50-176	NM_004224	exon2	c.G1320T	p.K440N	CCCTAAGCCTGCC	.	152	53	118	0	.	0	0	0	0	0	T	150349375	G	T	150349375	3	4	31	1	0	0	0	0	1	0	0	0	6717	962	34	3	1326	3	GPR50	23	150349375	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	807	150349375	4921185	2410	7784										
FATE1	89885	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	150891194	150891194	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	catcgccgtgctggtgtcggCcagcattgccaacctgtggc	13	14	0	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	FATE1-131	NM_033085	exon5	c.C515G	p.A172G	TGTCGGCCAGCAT	.	470	159	386	1	.	0	0	0	0	0	G	150891194	C	G	150891194	3	3	31	1	0	0	0	0	1	0	0	0	5712	739	26	3	533	3	FATE1	23	150891194	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	541819	150891194	4379366	2411	7785										
CNGA2	1260	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	150911588	150911588	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tcctggagcaggggctgctgGtcaaagataccaagaaactg	13	9	1	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CNGA2-193	NM_005140	exon7	c.G613T	p.V205F	CTGCTGGTCAAAG	.	205	65	240	1	.	0	0	0	0	0	T	150911588	G	T	150911588	3	4	31	1	0	0	0	0	1	0	0	0	3603	1261	44	3	635	3	CNGA2	23	150911588	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	20394	150911588	4358972	2412	7786										
CNGA2	1260	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	150911921	150911921	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	acccaaacatcactgaccctGagtatggctacctggctagg	9	13	1	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CNGA2-193	NM_005140	exon7	c.G946T	p.E316X	GACCCTGAGTATG	.	319	93	296	0	.	0	0	0	0	0	T	150911921	G	T	150911921	4	4	31	1	0	0	0	0	0	1	0	0	3603	1291	45	3	968	3	CNGA2	23	150911921	Nonsense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	333	150911921	4358639	2413	7787										
CNGA2	1260	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	150912769	150912769	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	agcatggaggtcgacgtgcaGgagaagctagggcagctgga	18	7	0	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	CNGA2-193	NM_005140	exon7	c.G1794A	p.Q598Q	CGTGCAGGAGAAG	.	172	65	180	0	.	0	0	0	0	0	A	150912769	G	A	150912769	2	1	31	1	0	0	0	0	0	0	0	1	3603	991	35	3		3	CNGA2	23	150912769	Silent	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	848	150912769	4357791	2414	7788										
MAGEA4	4103	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	151092271	151092271	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gctgtctcctcctcctctccTctggtccctggcaccctgga	8	19	3	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MAGEA4-194	NM_001011548	exon3	c.T135A	p.P45P	CTCTCCTCTGGTC	.	409	134	316	0	.	0	0	0	0	0	A	151092271	T	A	151092271	2	1	31	1	0	0	0	0	0	0	0	1	9196	1538	54	5		5	MAGEA4	23	151092271	Silent	SNP	T	TCGA-OR-A5KB-01A-11D-A30A-10	179502	151092271	4178289	2415	7789										
PNMA5	114824	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	152159412	152159412	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tctgcagaaacctaaactgaGaggctctaaagtcctcttta	7	10	3	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PNMA5-131	NM_001103150	exon2	c.C731G	p.S244C	AACTGAGAGGCTC	.	57	25	51	0	.	0	0	0	0	0	C	152159412	G	C	152159412	3	2	31	1	0	0	0	0	1	0	0	0	12185	942	33	3	619	3	PNMA5	23	152159412	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	1067141	152159412	3111148	2416	7790										
PNMA3	29944	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	152226512	152226512	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cactggggttggggcagtacCtctccctgcctctggcaaca	12	14	2	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PNMA3-600	NM_013364	exon2	c.C1100T	p.P367L	CAGTACCTCTCCC	.	179	53	169	0	.	0	0	0	0	0	T	152226512	C	T	152226512	3	4	31	1	0	0	0	0	1	0	0	0	12184	681	24	3	1102	3	PNMA3	23	152226512	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	67100	152226512	3044048	2417	7791										
PNMA3	29944	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	152226745	152226745	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	agaagaaacaggctgcagttGagtcgggaaacgggaactgg	16	6	0	3	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PNMA3-600	NM_013364	exon2	c.G1333C	p.E445Q	GCAGTTGAGTCGG	.	287	97	220	0	.	0	0	0	0	0	C	152226745	G	C	152226745	3	2	31	1	0	0	0	0	1	0	0	0	12184	1291	45	3	1335	3	PNMA3	23	152226745	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	233	152226745	3043815	2418	7792										
MAGEA1	4100	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	152482814	152482814	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gtcgagtgaagttgatggtaGtgggaaaggcggaggctccc	18	6	0	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MAGEA1-622	NM_004988	exon3	c.C197A	p.T66N	ATGGTAGTGGGAA	.	419	100	358	0	.	0	0	0	0	0	T	152482814	G	T	152482814	3	4	31	1	0	0	0	0	1	0	0	0	9191	1029	36	3	736	3	MAGEA1	23	152482814	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	256069	152482814	2787746	2419	7793										
TREX2	11219	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	152710779	152710779	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ccgggttctccagggaggagCggtggacagcaaagagggac	18	9	1	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	TREX2-227	NM_080701	exon2	c.G110T	p.R37L	GAGGAGCGGTGGA	.	447	156	277	1	.	0	0	0	0	0	A	152710779	C	A	152710779	3	1	31	1	0	0	0	0	1	0	0	0	16515	768	27	2	603	2	TREX2	23	152710779	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	227965	152710779	2559781	2420	7794										
ATP2B3	492	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	152807877	152807877	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gtctgaccacgtgcgcaagtCagctgacaaagatcccatgc	10	13	2	3	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ATP2B3-109	NM_001001344	exon4	c.C761A	p.S254X	GCAAGTCAGCTGA	.	298	114	205	1	.	0	0	0	0	0	A	152807877	C	A	152807877	4	1	31	1	0	0	0	0	0	1	0	0	1142	838	29	3	775	3	ATP2B3	23	152807877	Nonsense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	97098	152807877	2462683	2421	7795										
ATP2B3	492	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	152823605	152823605	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gacgtggccaaggaggcctcCgacatcatcctgaccgatga	12	13	1	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	ATP2B3-109	NM_001001344	exon15	c.C2469A	p.S823S	GGCCTCCGACATC	.	638	220	555	2	.	0	0	0	0	0	A	152823605	C	A	152823605	2	1	31	1	0	0	0	0	0	0	0	1	1142	639	23	2		2	ATP2B3	23	152823605	Silent	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	15728	152823605	2446955	2422	7796										
PNCK	139728	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	152936621	152936621	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	agctcagggtcgctctcgtcGtagaagggggggtacccaca	15	11	2	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PNCK-207	NM_001039582	exon8	c.C888A	p.Y296X	CTCGTCGTAGAAG	.	103	34	109	0	.	0	0	0	0	0	T	152936621	G	T	152936621	4	4	31	1	0	0	0	0	0	1	0	0	12174	1140	40	2	408	2	PNCK	23	152936621	Nonsense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	113016	152936621	2333939	2423	7797										
SLC6A8	6535	hgsc.bcm.edu	37	chrX	152954055	152954055	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gaagaagagcgccgagaacgGcatctatagcgtgtccggcg	15	10	1	3	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SLC6A8-131	NM_005629	exon1	c.G26A	p.G9D	AGAACGGCATCTA	.	12	7	0	0	.	0	0	0	0	0	A	152954055	G	A	152954055	3	1	31	1	0	0	0	0	1	0	0	0	14725	1203	42	3	28	3	SLC6A8	23	152954055	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	17434	152954055	2316505	2424	7798										
SLC6A8	6535	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	152958807	152958807	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ggcagctacaaccgcttcaaCaacaactgctacaagtaagc	7	13	1	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SLC6A8-131	NM_005629	exon6	c.C1002A	p.N334K	CTTCAACAACAAC	.	361	121	269	0	.	0	0	0	0	0	A	152958807	C	A	152958807	3	1	31	1	0	0	0	0	1	0	0	0	14725	477	17	3	1024	3	SLC6A8	23	152958807	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	4752	152958807	2311753	2425	7799										
PLXNB3	5365	hgsc.bcm.edu	37	chrX	153033266	153033266	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ctgggtgccagcatggagcaGgcccggagactctgctacac	14	13	1	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PLXNB3-130	NM_001163257	exon4	c.G1053C	p.Q351H	GGAGCAGGCCCGG	.	81	27	5	0	.	0	0	0	0	0	C	153033266	G	C	153033266	3	2	31	1	0	0	0	0	1	0	0	0	12154	991	35	3	1108	3	PLXNB3	23	153033266	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	74459	153033266	2237294	2426	7800										
PLXNB3	5365	ucsc.edu;bcgsc.ca	37	chrX	153035684	153035684	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cctccccaagaccaggtgccActtaaccctccaggcacagg	8	18	0	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PLXNB3-130	NM_001163257	exon9	c.A1836T	p.P612P	GGTGCCACTTAAC	.	152	50	145	2	.	0	0	0	0	0	T	153035684	A	T	153035684	2	4	31	1	0	0	0	0	0	0	0	1	12154	146	6	5		5	PLXNB3	23	153035684	Silent	SNP	A	TCGA-OR-A5KB-01A-11D-A30A-10	2418	153035684	2234876	2427	7801										
PLXNB3	5365	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	153036070	153036070	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ggagagcactgcccagagggCgagaggaccatctacagcgc	15	12	1	3	rs143446986	alternate_allele	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PLXNB3-130	NM_001163257	exon11	c.C2052A	p.G684G	AGAGGGCGAGAGG	.	301	97	240	1	C|1.000;T|0.000	0	0	0	0	0	A	153036070	C	A	153036070	2	1	31	1	0	0	0	0	0	0	0	1	12154	755	27	2		2	PLXNB3	23	153036070	Silent	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	386	153036070	2234490	2428	7802										
PLXNB3	5365	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	153036423	153036423	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	acagcgtccttccccagggcCtgcctgcctccttccactgc	8	20	0	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PLXNB3-130	NM_001163257	exon13	c.C2209A	p.L737M	CAGGGCCTGCCTG	.	333	119	263	1	.	0	0	0	0	0	A	153036423	C	A	153036423	3	1	31	1	0	0	0	0	1	0	0	0	12154	680	24	3	2300	3	PLXNB3	23	153036423	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	353	153036423	2234137	2429	7803										
PLXNB3	5365	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	153042416	153042416	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	atctcccagagcctggcccaGaggtgccccttgggagagag	14	13	1	3	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	PLXNB3-130	NM_001163257	exon30	c.G4977T	p.Q1659H	GGCCCAGAGGTGC	.	330	128	311	0	.	0	0	0	0	0	T	153042416	G	T	153042416	3	4	31	1	0	0	0	0	1	0	0	0	12154	933	33	3	5136	3	PLXNB3	23	153042416	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	5993	153042416	2228144	2430	7804										
IDH3G	3421	ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	153055722	153055722	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ggatcatggtcaccgtgtgcCgcccgccatacttagcggac	12	14	2	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	IDH3G-90	NM_004135	exon4	c.G161C	p.R54P	GTGTGCCGCCCGC	.	311	82	309	1	.	0	0	0	0	0	G	153055722	C	G	153055722	3	3	31	1	0	0	0	0	1	0	0	0	7519	652	23	2	1123	2	IDH3G	23	153055722	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	13306	153055722	2214838	2431	7805										
L1CAM	3897	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	153133825	153133825	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	gtgatgctgggctgcaaggaGgggtcaaaggaggcctggca	19	7	1	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	L1CAM-138	NM_000425	exon13	c.C1635A	p.P545P	CAAGGAGGGGTCA	.	318	123	270	0	.	0	0	0	0	0	T	153133825	G	T	153133825	2	4	31	1	0	0	0	0	0	0	0	1	8610	987	35	3		3	L1CAM	23	153133825	Silent	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	78103	153133825	2136735	2432	7806										
HCFC1	3054	broad.mit.edu;bcgsc.ca;mdanderson.org	37	chrX	153220099	153220099	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cacaggtgccatgcggggctCcccagcacccacgctggaac	12	17	0	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	HCFC1-132	NM_005334	exon17	c.G3751T	p.E1251X	GGGGCTCCCCAGC	.	147	59	42	1	.	0	0	0	0	0	A	153220099	C	A	153220099	4	1	31	1	0	0	0	0	0	1	0	0	7012	864	30	3	2396	3	HCFC1	23	153220099	Nonsense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	86274	153220099	2050461	2433	7807										
HCFC1	3054	ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	153222835	153222835	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	atggtggtcgtgccgggcttGgtggtactgggggagacgct	20	7	0	1	rs2071134	byfrequency	TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	HCFC1-132	NM_005334	exon13	c.C2283G	p.T761T	GGGCTTGGTGGTA	.	188	57	233	0	G|0.666;C|0.334	0	0	0	0	0	C	153222835	G	C	153222835	2	2	31	1	0	0	0	0	0	0	0	1	7012	1335	47	3		3	HCFC1	23	153222835	Silent	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	2736	153222835	2047725	2434	7808										
SLC10A3	8273	ucsc.edu;bcgsc.ca	37	chrX	153716005	153716005	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	atggccaaggccagcaggctGttctgcacccctacctcaat	9	15	2	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	SLC10A3-132	NM_001142392	exon3	c.C1275A	p.N425K	CAGGCTGTTCTGC	.	445	174	422	2	.	0	0	0	0	0	T	153716005	G	T	153716005	3	4	31	1	0	0	0	0	1	0	0	0	14410	1368	48	3	162	3	SLC10A3	23	153716005	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	493170	153716005	1554555	2435	7809										
G6PD	2539	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	153762677	153762677	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	agagctctgcaggtccctccCgaagggcttctccacgatga	11	14	2	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	G6PD-135	NM_000402	exon6	c.G610C	p.G204R	CCCTCCCGAAGGG	.	164	72	161	1	.	0	0	0	0	0	G	153762677	C	G	153762677	3	3	31	1	0	0	0	0	1	0	0	0	6165	652	23	2	1059	2	G6PD	23	153762677	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	46672	153762677	1507883	2436	7810										
GAB3	139716	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	153927602	153927602	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cttgagatctctattcactgGgggaggttccaggtttgcag	13	8	2	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	GAB3-227	NM_001081573	exon6	c.C1312A	p.P438T	TCACTGGGGGAGG	.	172	65	129	0	.	0	0	0	0	0	T	153927602	G	T	153927602	3	4	31	1	0	0	0	0	1	0	0	0	6169	1232	43	3	471	3	GAB3	23	153927602	Missense_Mutation	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	164925	153927602	1342958	2437	7811										
DKC1	1736	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	154001499	154001499	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	catggagagagacacttaccCtcggaagtggggtttaggtc	14	8	0	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	DKC1-227	NM_001363	exon11	c.C1130A	p.P377H	CTTACCCTCGGAA	.	588	237	454	0	.	0	0	0	0	0	A	154001499	C	A	154001499	3	1	31	1	0	0	0	0	1	0	0	0	4553	681	24	3	1172	3	DKC1	23	154001499	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	73897	154001499	1269061	2438	7812										
F8	2157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	154157538	154157538	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tttggaagcaattcaactttGccagatgttttgggcaagtc	10	7	1	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	F8-182	NM_000132	exon14	c.C4527G	p.G1509G	AACTTTGCCAGAT	.	103	35	70	0	.	0	0	0	0	0	C	154157538	G	C	154157538	2	2	31	1	0	0	0	0	0	0	0	1	5363	1306	46	3		3	F8	23	154157538	Silent	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	156039	154157538	1113022	2439	7813										
F8	2157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	154158316	154158316	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cttctacattttgcctagtgCtcagtaagaaaaggttcttc	7	9	3	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	F8-182	NM_000132	exon14	c.G3749T	p.S1250I	CTAGTGCTCAGTA	.	64	26	52	0	.	0	0	0	0	0	A	154158316	C	A	154158316	3	1	31	1	0	0	0	0	1	0	0	0	5363	797	28	3	3386	3	F8	23	154158316	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	778	154158316	1112244	2440	7814										
F8	2157	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	154176151	154176151	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tcatgcaaacaaactgacaaCtgcaaactatcaaaaacata	3	10	2	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	F8-182	NM_000132	exon13	c.G1935A	p.Q645Q	TGACAACTGCAAA	.	182	75	133	2	.	0	0	0	0	0	T	154176151	C	T	154176151	2	4	31	1	0	0	0	0	0	0	0	1	5363	564	20	3		3	F8	23	154176151	Silent	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	17835	154176151	1094409	2441	7815										
MTCP1	4515	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	154294183	154294183	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	caaaatgtaaacagttacctCttccacgacggccacccacg	6	15	1	0	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	MTCP1-658	NM_001018025	exon2	c.G103T	p.E35X	TTACCTCTTCCAC	.	81	28	70	3	.	0	0	0	0	0	A	154294183	C	A	154294183	4	1	31	1	0	0	0	0	0	1	0	0	9943	922	32	3	232	3	MTCP1	23	154294183	Nonsense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	118032	154294183	976377	2442	7816										
IL9R	3581	ucsc.edu;bcgsc.ca	37	chrX	155235035	155235035	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	tttatccatgaggccaggctGcgtgtccagatggccacact	11	12	0	2	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	IL9R-40	NM_176786	exon7	c.G777T	p.L259L	CAGGCTGCGTGTC	.	684	245	550	4	.	0	0	0	0	0	T	155235035	G	T	155235035	2	4	31	1	0	0	0	0	0	0	0	1	7729	1306	46	3		3	IL9R	23	155235035	Silent	SNP	G	TCGA-OR-A5KB-01A-11D-A30A-10	940852	155235035	35525	2443	7817										
IL9R	3581	broad.mit.edu;bcgsc.ca	37	chrX	155239857	155239858	+	Missense_Mutation	DNP	GG	GG	TT													0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	ctgtgccttgggctgctatgGgggatggcacctctcagccc					novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	GG	GG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	IL9R-40	NM_002186	exon9	c.G1350T	p.G450V	CTATGGGGGATGG	.	360	20	336	0	.	0	0	0	0	0	TT	155239858	GG	TT	155239857	3	4	31	1	0	0	0	0	1	0	0	0	7729	1232	43	3	1383	3	IL9R	23	155239857	Missense_Mutation	DNP	GG	TCGA-OR-A5KB-01A-11D-A30A-10	4822	155239857	30703	2444	7818										
IL9R	3581	bcgsc.ca	37	chrX	155239892	155239892	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0582605076987099	140	4.85172882393305e-06	1.54423764422172	1.69797396978973	1.39432349249381	0.278768372346398	1	49	cagccctcccaggaaacacaCagagctctgggcccatccca	8	18	1	1	novel		TCGA-OR-A5KB-01A-11D-A30A-10	TCGA-OR-A5KB-11A-11D-A30A-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	345f8ed2-85e0-4e5d-ab6e-2927776208ea	589759bc-d52f-438a-a57d-8498c9c9929c	.	IL9R-40	NM_002186	exon9	c.C1384A	p.Q462K	AACACACAGAGCT	.	332	65	336	1	.	0	0	0	0	0	A	155239892	C	A	155239892	3	1	31	1	0	0	0	0	1	0	0	0	7729	479	17	3	1418	3	IL9R	23	155239892	Missense_Mutation	SNP	C	TCGA-OR-A5KB-01A-11D-A30A-10	35	155239892	30668	2445	7819										
PRAMEF1	65121	bcgsc.ca	37	chr1	12855598	12855599	+	Missense_Mutation	DNP	AC	AC	TG													0.0684931506849315	10	0.929330005145667	1.17761452031115	0.574087078651685	1.33336353751359	0.00275945618522009	0.062903033765905	0	tctccacaggtgcctccagaAccccttggagaacttggaat					novel		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	AC	AC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	PRAMEF1-22	NM_023013	exon4	c.C879G	p.N293M	CCAGAACCCCTTG	.	24	0	81	0	.	0	0	0	0	0	TG	12855599	AC	TG	12855598	3	4	32	1	0	0	0	0	1	0	0	0	12457	43	2	5	888	5	PRAMEF1	1	12855598	Missense_Mutation	DNP	AC	TCGA-OR-A5KO-01A-11D-A29I-10		12855598	236395023	1	7820										
PRAMEF11	440560	ucsc.edu;bcgsc.ca	37	chr1	12884981	12884981	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0684931506849315	10	0.929330005145667	1.17761452031115	0.574087078651685	1.33336353751359	0.00275945618522009	0.062903033765905	0	catcagcaccataactttccTgcggggcaggatacagctcc	9	14	1	0	rs71225486		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	.	NM_001146344	exon4	c.A1130G	p.Q377R	CTTTCCTGCGGGG	.	36	4	272	3	T|0.500;C|0.500	0	0	0	0	0	C	12884981	T	C	12884981	3	2	32	1	0	0	0	0	1	0	0	0	12459	1580	55	4	184	4	PRAMEF11	1	12884981	Missense_Mutation	SNP	T	TCGA-OR-A5KO-01A-11D-A29I-10	29383	12884981	236365640	2	7821										
SDHB	6390	broad.mit.edu	37	chr1	17380491	17380491	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0684931506849315	10	0.929330005145667	1.17761452031115	0.574087078651685	1.33336353751359	0.00275945618522009	0.062903033765905	0	gccggcaaccggcgcctcaaGgagagggcgaccaccgccgc	15	17	1	1	rs148738139	byfrequency	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	SDHB-658	NM_003000	exon1	c.C24T	p.S8S	CCTCAAGGAGAGG	.	186	5	70	0	G|0.996;A|0.004	0	0	0	0	0	A	17380491	G	A	17380491	2	1	32	1	0	0	0	0	0	0	0	1	14000	987	35	3		3	SDHB	1	17380491	Silent	SNP	G	TCGA-OR-A5KO-01A-11D-A29I-10	4495510	17380491	231870130	3	7822										
PADI4	23569	bcgsc.ca	37	chr1	17660499	17660499	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0684931506849315	10	0.929330005145667	1.17761452031115	0.574087078651685	1.33336353751359	0.00275945618522009	0.062903033765905	0	agctctactctacctcaccgGggtgggtaagtgacaaccag	11	12	3	1	rs874881	byfrequency	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	PADI4-70	NM_012387	exon3	c.G335C	p.G112A	TCACCGGGGTGGG	.	119	5	104	1	G|0.467;C|0.533	0	0	0	0	0	C	17660499	G	C	17660499	3	2	32	1	0	0	0	0	1	0	0	0	11409	1232	43	3	345	3	PADI4	1	17660499	Missense_Mutation	SNP	G	TCGA-OR-A5KO-01A-11D-A29I-10	280008	17660499	231590122	4	7823										
KIF17	57576	bcgsc.ca	37	chr1	21012575	21012575	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0684931506849315	10	0.929330005145667	1.17761452031115	0.574087078651685	1.33336353751359	0.00275945618522009	0.062903033765905	0	tcatcagccgcctcggcttcGggcctggcatcactgggctc	12	16	3	0	rs479323	byfrequency	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	KIF17-94	NM_001122819	exon9	c.C1983T	p.P661P	GGCTTCGGGCCTG	.	99	5	44	0	G|0.793;A|0.207	0	0	0	0	0	A	21012575	G	A	21012575	2	1	32	1	0	0	0	0	0	0	0	1	8300	1103	39	1		1	KIF17	1	21012575	Silent	SNP	G	TCGA-OR-A5KO-01A-11D-A29I-10	3352076	21012575	228238046	5	7824										
HSPG2	3339	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	22180824	22180824	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0684931506849315	10	0.929330005145667	1.17761452031115	0.574087078651685	1.33336353751359	0.00275945618522009	0.062903033765905	0	gacctgggggagccgcagacGggagccgtgcacctgggcca	18	13	0	1	novel		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	HSPG2-141	NM_005529	exon50	c.C6301G	p.R2101G	GCAGACGGGAGCC	.	53	45	49	0	.	12	5	7	0	0	C	22180824	G	C	22180824	3	2	32	1	0	0	0	0	1	0	0	0	7451	1116	39	2	7066	2	HSPG2	1	22180824	Missense_Mutation	SNP	G	TCGA-OR-A5KO-01A-11D-A29I-10	1168249	22180824	227069797	6	7825										
ALG6	29929	ucsc.edu;bcgsc.ca	37	chr1	63885045	63885045	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0684931506849315	10	0.929330005145667	1.17761452031115	0.574087078651685	1.33336353751359	0.00275945618522009	0.062903033765905	0	cccttttttcttaaaggttaGctgtgcgctatcattctttt	6	9	3	0	novel		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	ALG6-90	NM_013339	exon12	c.G992T	p.S331I	AGGTTAGCTGTGC	.	37	4	28	0	.	0	0	0	0	0	T	63885045	G	T	63885045	3	4	32	1	0	0	0	0	1	0	0	0	522	971	34	3	1034	3	ALG6	1	63885045	Missense_Mutation	SNP	G	TCGA-OR-A5KO-01A-11D-A29I-10	41704221	63885045	185365576	7	7826										
KCNN3	3782	bcgsc.ca	37	chr1	154744852	154744852	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0684931506849315	10	0.929330005145667	1.17761452031115	0.574087078651685	1.33336353751359	0.00275945618522009	0.062903033765905	0	atccgccagtcatccgcgccAttgtcgatcacgaagagctg	10	14	2	1	rs1131820	byfrequency	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	KCNN3-91	NM_001204087	exon3	c.T1047C	p.N349N	CGCGCCATTGTCG	.	379	9	260	2	G|0.746;N|0.000	0	0	0	0	0	G	154744852	A	G	154744852	2	3	32	1	0	0	0	0	0	0	0	1	8101	214	8	4		4	KCNN3	1	154744852	Silent	SNP	A	TCGA-OR-A5KO-01A-11D-A29I-10	90859807	154744852	94505769	8	7827										
SOAT1	6646	ucsc.edu;bcgsc.ca	37	chr1	179312752	179312752	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0684931506849315	10	0.929330005145667	1.17761452031115	0.574087078651685	1.33336353751359	0.00275945618522009	0.062903033765905	0	actgtaagatggggttatgtCgctatgaagtttgcacaggt	13	5	0	2	rs10753191	byfrequency	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	SOAT1-515	NM_003101	exon10	c.C969T	p.V323V	TTATGTCGCTATG	.	47	4	45	0	C|0.768;N|0.000	247	247	0	0	0	T	179312752	C	T	179312752	2	4	32	1	0	0	0	0	0	0	0	1	14945	871	31	1		1	SOAT1	1	179312752	Silent	SNP	C	TCGA-OR-A5KO-01A-11D-A29I-10	24567900	179312752	69937869	9	7828										
IGFN1	91156	bcgsc.ca	37	chr1	201184275	201184275	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0684931506849315	10	0.929330005145667	1.17761452031115	0.574087078651685	1.33336353751359	0.00275945618522009	0.062903033765905	0	cagagcgaggccaccctgacCgtccagggtaaggcccagcc	13	16	0	2	rs2275673	byfrequency	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	IGFN1-71	NM_001164586	exon14	c.C8988T	p.T2996T	CCTGACCGTCCAG	.	332	10	286	0	C|0.683;T|0.317	0	0	0	0	0	T	201184275	C	T	201184275	2	4	32	1	0	0	0	0	0	0	0	1	7611	639	23	1		1	IGFN1	1	201184275	Silent	SNP	C	TCGA-OR-A5KO-01A-11D-A29I-10	21871523	201184275	48066346	10	7829										
SLC26A9	115019	broad.mit.edu	37	chr1	205898454	205898454	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0684931506849315	10	0.929330005145667	1.17761452031115	0.574087078651685	1.33336353751359	0.00275945618522009	0.062903033765905	0	gagcgaggcgatgttggtgtGggggaggtttttgcaaatgt	19	3	0	0	rs143411715	byfrequency	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	SLC26A9-92	NM_052934	exon7	c.C748T	p.H250Y	TGGTGTGGGGGAG	.	67	4	77	0	G|0.999;A|0.001	0	0	0	0	0	A	205898454	G	A	205898454	3	1	32	1	0	0	0	0	1	0	0	0	14559	1348	47	3	1983	3	SLC26A9	1	205898454	Missense_Mutation	SNP	G	TCGA-OR-A5KO-01A-11D-A29I-10	4714179	205898454	43352167	11	7830										
OBSCN	84033	bcgsc.ca	37	chr1	228494790	228494790	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0684931506849315	10	0.929330005145667	1.17761452031115	0.574087078651685	1.33336353751359	0.00275945618522009	0.062903033765905	0	ctgcagagctgctggtacgcGgagtggagcaggaggatgcg	19	8	0	1	rs435776	byfrequency	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	OBSCN-403	NM_001271223	exon56	c.G14986A	p.G4996R	GTACGCGGAGTGG	.	461	11	286	1	G|0.378;T|0.151	4	4	0	0	0	A	228494790	G	A	228494790	3	1	32	1	0	0	0	0	1	0	0	0	10841	1117	39	1	12289	1	OBSCN	1	228494790	Missense_Mutation	SNP	G	TCGA-OR-A5KO-01A-11D-A29I-10	22596336	228494790	20755831	12	7831										
OBSCN	84033	hgsc.bcm.edu	37	chr1	228504669	228504669	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0684931506849315	10	0.929330005145667	1.17761452031115	0.574087078651685	1.33336353751359	0.00275945618522009	0.062903033765905	0	cgcgacgccgtggcctctgcGcggctcaccgtgctgggtgg	17	15	2	0	rs61825302	bycluster;byfrequency;by1000genomes	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	OBSCN-403	NM_001271223	exon62	c.G16416A	p.A5472A	CTCTGCGCGGCTC	.	10	10	0	0	G|0.841;A|0.159	2	0	2	0	0	A	228504669	G	A	228504669	2	1	32	1	0	0	0	0	0	0	0	1	10841	1074	38	1		1	OBSCN	1	228504669	Silent	SNP	G	TCGA-OR-A5KO-01A-11D-A29I-10	9879	228504669	20745952	13	7832										
PGBD5	79605	broad.mit.edu	37	chr1	230492646	230492646	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0684931506849315	10	0.929330005145667	1.17761452031115	0.574087078651685	1.33336353751359	0.00275945618522009	0.062903033765905	0	tgcgtgggcctcacctgggtTtgggaaggcctgaaggcaga	17	9	1	2	novel		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	PGBD5-93	NM_001258311	exon2	c.A753G	p.Q251Q	CTGGGTTTGGGAA	.	139	6	115	0	.	0	0	0	0	0	C	230492646	T	C	230492646	2	2	32	1	0	0	0	0	0	0	0	1	11813	1838	64	4		4	PGBD5	1	230492646	Silent	SNP	T	TCGA-OR-A5KO-01A-11D-A29I-10	1987977	230492646	18757975	14	7833										
PLEKHH2	130271	ucsc.edu;bcgsc.ca	37	chr2	43931138	43931138	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0684931506849315	10	0.929330005145667	1.17761452031115	0.574087078651685	1.33336353751359	0.00275945618522009	0.062903033765905	0	aggaaagcagaatttatgctGtagccaaatcaggtattcga	10	6	1	1	novel		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	PLEKHH2-92	NM_172069	exon9	c.G1669T	p.V557L	TATGCTGTAGCCA	.	41	4	35	0	.	1	1	0	0	0	T	43931138	G	T	43931138	3	4	32	1	0	0	0	0	1	0	0	0	12106	1377	48	3	1699	3	PLEKHH2	2	43931138	Missense_Mutation	SNP	G	TCGA-OR-A5KO-01A-11D-A29I-10		43931138	199268235	15	7834										
TSPYL6	388951	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr2	54482557	54482557	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0684931506849315	10	0.929330005145667	1.17761452031115	0.574087078651685	1.33336353751359	0.00275945618522009	0.062903033765905	0	aagcccgggatattgcgaatGatgtcattcctctgctccag	10	11	2	1	novel		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	TSPYL6-90	NM_001003937	exon1	c.C732A	p.I244I	GCGAATGATGTCA	.	72	5	90	0	.	0	0	0	0	0	T	54482557	G	T	54482557	2	4	32	1	0	0	0	0	0	0	0	1	16701	1280	45	3		3	TSPYL6	2	54482557	Silent	SNP	G	TCGA-OR-A5KO-01A-11D-A29I-10	10551419	54482557	188716816	16	7835										
SLC1A4	6509	broad.mit.edu	37	chr2	65217143	65217143	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0684931506849315	10	0.929330005145667	1.17761452031115	0.574087078651685	1.33336353751359	0.00275945618522009	0.062903033765905	0	atcgctgtcgcctactttggCctcaccacactgagtgcctc	8	16	1	1	novel		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	SLC1A4-91	NM_003038	exon1	c.C366A	p.G122G	CTTTGGCCTCACC	.	63	4	16	0	.	5	4	1	0	0	A	65217143	C	A	65217143	2	1	32	1	0	0	0	0	0	0	0	1	14469	726	26	3		3	SLC1A4	2	65217143	Silent	SNP	C	TCGA-OR-A5KO-01A-11D-A29I-10	10734586	65217143	177982230	17	7836										
CAPG	822	bcgsc.ca	37	chr2	85628745	85628745	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0684931506849315	10	0.929330005145667	1.17761452031115	0.574087078651685	1.33336353751359	0.00275945618522009	0.062903033765905	0	acaggccgctctcccagcagCgtgttgaggtgcacagccag	13	14	1	1	rs2229669	byfrequency	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	CAPG-204	NM_001256140	exon4	c.G258A	p.T86T	CAGCAGCGTGTTG	.	106	5	44	0	C|0.941;T|0.059	33	33	0	0	0	T	85628745	C	T	85628745	2	4	32	1	0	0	0	0	0	0	0	1	2627	755	27	1		1	CAPG	2	85628745	Silent	SNP	C	TCGA-OR-A5KO-01A-11D-A29I-10	20411602	85628745	157570628	18	7837										
SF3B1	23451	bcgsc.ca	37	chr2	198257795	198257795	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0684931506849315	10	0.929330005145667	1.17761452031115	0.574087078651685	1.33336353751359	0.00275945618522009	0.062903033765905	0	acatgaggagatgtctcaaaTacattgggccatacatagtt	9	7	1	2	rs4685	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	SF3B1-140	NM_012433	exon24	c.A3657G	p.V1219V	CTCAAATACATTG	.	301	10	351	1	T|0.202;G|0.145;C|0.593;A|0.059	153	153	0	0	0	C	198257795	T	C	198257795	2	2	32	1	0	0	0	0	0	0	0	1	14184	1393	49	4		4	SF3B1	2	198257795	Silent	SNP	T	TCGA-OR-A5KO-01A-11D-A29I-10	112629050	198257795	44941578	19	7838										
SMARCAL1	50485	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	217341854	217341854	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0684931506849315	10	0.929330005145667	1.17761452031115	0.574087078651685	1.33336353751359	0.00275945618522009	0.062903033765905	0	gctgatccaggctgaggaccGcgtgcaccgcattggacaga	14	12	0	3	novel		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	SMARCAL1-293	NM_014140	exon16	c.G2450A	p.R817H	AGGACCGCGTGCA	.	86	76	98	0	.	23	1	21	0	1	A	217341854	G	A	217341854	3	1	32	1	0	0	0	0	1	0	0	0	14808	1087	38	1	2504	1	SMARCAL1	2	217341854	Missense_Mutation	SNP	G	TCGA-OR-A5KO-01A-11D-A29I-10	19084059	217341854	25857519	20	7839										
TM4SF20	79853	bcgsc.ca	37	chr2	228243905	228243905	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0684931506849315	10	0.929330005145667	1.17761452031115	0.574087078651685	1.33336353751359	0.00275945618522009	0.062903033765905	0	agctgacaattagaggtatcGcattgagaactactcctaac	8	9	0	3	rs7574414	byfrequency	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	TM4SF20-514	NM_024795	exon1	c.C80T	p.A27V	GGTATCGCATTGA	.	94	5	98	0	G|0.889;A|0.111	0	0	0	0	0	A	228243905	G	A	228243905	3	1	32	1	0	0	0	0	1	0	0	0	16006	1087	38	1	625	1	TM4SF20	2	228243905	Missense_Mutation	SNP	G	TCGA-OR-A5KO-01A-11D-A29I-10	10902051	228243905	14955468	21	7840										
NISCH	11188	hgsc.bcm.edu	37	chr3	52492817	52492817	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0684931506849315	10	0.929330005145667	1.17761452031115	0.574087078651685	1.33336353751359	0.00275945618522009	0.062903033765905	0	cctggctgccttccctggcgTgacccccagagtactggccc	11	18	0	2	novel		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	NISCH-93	NM_001276293	exon3	c.T317C	p.V106A	CTGGCGTGACCCC	.	62	4	68	0	.	7	7	0	0	0	C	52492817	T	C	52492817	3	2	32	1	0	0	0	0	1	0	0	0	10461	1696	59	4	327	4	NISCH	3	52492817	Missense_Mutation	SNP	T	TCGA-OR-A5KO-01A-11D-A29I-10		52492817	145529613	22	7841										
STAB1	23166	bcgsc.ca	37	chr3	52556369	52556369	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0684931506849315	10	0.929330005145667	1.17761452031115	0.574087078651685	1.33336353751359	0.00275945618522009	0.062903033765905	0	acacggcgctgtgagtgccaCgcaggctacgtaggcgatgg	16	11	0	1	rs35325270	byfrequency	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	STAB1-139	NM_015136	exon60	c.C6489T	p.H2163H	GTGCCACGCAGGC	.	129	6	54	0	C|0.850;T|0.150	4	3	1	0	0	T	52556369	C	T	52556369	2	4	32	1	0	0	0	0	0	0	0	1	15274	535	19	1		1	STAB1	3	52556369	Silent	SNP	C	TCGA-OR-A5KO-01A-11D-A29I-10	63552	52556369	145466061	23	7842										
MYLK	4638	bcgsc.ca	37	chr3	123452838	123452838	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0684931506849315	10	0.929330005145667	1.17761452031115	0.574087078651685	1.33336353751359	0.00275945618522009	0.062903033765905	0	gaagtcttctgaaggaccggGgtctgcggggccgttctggg	18	9	4	1	rs4678047	byfrequency	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	MYLK-365	NM_053025	exon10	c.C1005T	p.T335T	GACCGGGGTCTGC	.	104	6	46	0	A|0.608;G|0.392	0	0	0	0	0	A	123452838	G	A	123452838	2	1	32	1	0	0	0	0	0	0	0	1	10084	1219	43	3		3	MYLK	3	123452838	Silent	SNP	G	TCGA-OR-A5KO-01A-11D-A29I-10	70896469	123452838	74569592	24	7843										
MUC4	4585	bcgsc.ca	37	chr3	195506147	195506147	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0684931506849315	10	0.929330005145667	1.17761452031115	0.574087078651685	1.33336353751359	0.00275945618522009	0.062903033765905	0	acctgtggatactgaggaaaGgctggtgagaggaagagggg	19	4	0	3	rs200473856	byfrequency;alternate_allele	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	MUC4-90	NM_018406	exon2	c.C12304A	p.L4102I	AGGAAAGGCTGGT	.	152	35	238	7	G|0.981;A|0.019	0	0	0	0	0	T	195506147	G	T	195506147	3	4	32	1	0	0	0	0	1	0	0	0	10006	1000	35	3		3	MUC4	3	195506147	Missense_Mutation	SNP	G	TCGA-OR-A5KO-01A-11D-A29I-10	72053309	195506147	2516283	25	7844										
MUC4	4585	bcgsc.ca	37	chr3	195508546	195508546	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0684931506849315	10	0.929330005145667	1.17761452031115	0.574087078651685	1.33336353751359	0.00275945618522009	0.062903033765905	0	gacctgtggatactgaggaaGtctcggtgacaagaagaggg	16	6	1	4	novel		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	MUC4-90	NM_018406	exon2	c.C9905A	p.T3302N	GAGGAAGTCTCGG	.	424	26	220	2	.	0	0	0	0	0	T	195508546	G	T	195508546	3	4	32	1	0	0	0	0	1	0	0	0	10006	1029	36	3		3	MUC4	3	195508546	Missense_Mutation	SNP	G	TCGA-OR-A5KO-01A-11D-A29I-10	2399	195508546	2513884	26	7845										
MUC4	4585	bcgsc.ca	37	chr3	195511911	195511911	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0684931506849315	10	0.929330005145667	1.17761452031115	0.574087078651685	1.33336353751359	0.00275945618522009	0.062903033765905	0	gtggatgctgaggaagtgtcGgtgacaggaagagaggtggc	20	4	0	3	rs200732241		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	MUC4-90	NM_018406	exon2	c.C6540T	p.T2180T	AGTGTCGGTGACA	.	1002	89	600	15	G|0.998;A|0.002	0	0	0	0	0	A	195511911	G	A	195511911	2	1	32	1	0	0	0	0	0	0	0	1	10006	1103	39	1		1	MUC4	3	195511911	Silent	SNP	G	TCGA-OR-A5KO-01A-11D-A29I-10	3365	195511911	2510519	27	7846										
CRIPAK	285464	ucsc.edu	37	chr4	1388848	1388848	+	Silent	SNP	A	A	C													0.0684931506849315	10	0.929330005145667	1.17761452031115	0.574087078651685	1.33336353751359	0.00275945618522009	0.062903033765905	0	cccgcctgctcacacgtgccAacgtggagtgcccgcctgat					rs74511366	byfrequency	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	CRIPAK-90	NM_175918	exon1	c.A549C	p.P183P	CGTGCCAACGTGG	.	231	32	11	0	A|0.993;C|0.000;G|0.006	59	10	0	49	0	C	1388848	A	C	1388848	2	2	32	1	0	0	0	0	0	0	0	1	3883	117	5	5		5	CRIPAK	4	1388848	Silent	SNP	A	TCGA-OR-A5KO-01A-11D-A29I-10		1388848	189765428	28	7847	81	2	1	34		3	2	20	N	C_A	8.960502e-05
CRIPAK	285464	ucsc.edu	37	chr4	1388850	1388850	+	Missense_Mutation	SNP	C	C	T													0.0684931506849315	10	0.929330005145667	1.17761452031115	0.574087078651685	1.33336353751359	0.00275945618522009	0.062903033765905	0	cgcctgctcacacgtgccaaCgtggagtgcccgcctgatca					rs78729943	bycluster;byfrequency	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	CRIPAK-90	NM_175918	exon1	c.C551T	p.T184M	TGCCAACGTGGAG	.	233	29	11	0	C|0.500;T|0.500	8	8	0	0	0	T	1388850	C	T	1388850	3	4	32	1	0	0	0	0	1	0	0	0	3883	536	19	1	553	1	CRIPAK	4	1388850	Missense_Mutation	SNP	C	TCGA-OR-A5KO-01A-11D-A29I-10	2	1388850	189765426	29	7848	81	2	1	34		3	2	20	N	C_A	8.960502e-05
CRIPAK	285464	hgsc.bcm.edu	37	chr4	1388867	1388867	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0684931506849315	10	0.929330005145667	1.17761452031115	0.574087078651685	1.33336353751359	0.00275945618522009	0.062903033765905	0	caacgtggagtgcccgcctgAtcacacgtgcccatgtggag	13	13	1	1	rs76058011	byfrequency	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	CRIPAK-90	NM_175918	exon1	c.A568C	p.I190L	CGCCTGATCACAC	.	235	27	15	0	A|0.994;C|0.006	96	8	88	0	0	C	1388867	A	C	1388867	3	2	32	1	0	0	0	0	1	0	0	0	3883	333	12	5	570	5	CRIPAK	4	1388867	Missense_Mutation	SNP	A	TCGA-OR-A5KO-01A-11D-A29I-10	17	1388867	189765409	30	7849			1	34		3	2	20	N	C_A	8.960502e-05
OTOP1	133060	hgsc.bcm.edu	37	chr4	4228456	4228456	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0684931506849315	10	0.929330005145667	1.17761452031115	0.574087078651685	1.33336353751359	0.00275945618522009	0.062903033765905	0	gctggcgcgcacaccgccccGccggggggccggggattccg	18	17	0	0	rs73191872	bycluster;by1000genomes	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	OTOP1-92	NM_177998	exon1	c.C136A	p.R46R	CGCCCCGCCGGGG	.	37	6	1	0	.	0	0	0	0	0	T	4228456	G	T	4228456	2	4	32	1	0	0	0	0	0	0	0	1	11334	1086	38	2		2	OTOP1	4	4228456	Silent	SNP	G	TCGA-OR-A5KO-01A-11D-A29I-10	2839589	4228456	186925820	31	7850										
TBC1D1	23216	hgsc.bcm.edu	37	chr4	38138932	38138932	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0684931506849315	10	0.929330005145667	1.17761452031115	0.574087078651685	1.33336353751359	0.00275945618522009	0.062903033765905	0	gaccgggagcctgagtgcacGcagcccgagcccacgggcga	16	15	0	1	novel		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	TBC1D1-91	NM_015173	exon20	c.G3483A	p.T1161T	GTGCACGCAGCCC	.	44	26	3	0	.	43	16	26	1	0	A	38138932	G	A	38138932	2	1	32	1	0	0	0	0	0	0	0	1	15634	1074	38	1		1	TBC1D1	4	38138932	Silent	SNP	G	TCGA-OR-A5KO-01A-11D-A29I-10	33910476	38138932	153015344	32	7851										
MANBA	4126	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	103644191	103644191	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0684931506849315	10	0.929330005145667	1.17761452031115	0.574087078651685	1.33336353751359	0.00275945618522009	0.062903033765905	0	ccctgaccacgttggtaataTcaaagctctaagttaaaggg	9	9	2	1	novel		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	MANBA-91	NM_005908	exon4	c.A386G	p.D129G	GTAATATCAAAGC	.	120	48	78	0	.	0	0	0	0	0	C	103644191	T	C	103644191	3	2	32	1	0	0	0	0	1	0	0	0	9247	1435	50	4	2309	4	MANBA	4	103644191	Missense_Mutation	SNP	T	TCGA-OR-A5KO-01A-11D-A29I-10	65505259	103644191	87510085	33	7852										
SRD5A1	6715	hgsc.bcm.edu	37	chr5	6633779	6633779	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0684931506849315	10	0.929330005145667	1.17761452031115	0.574087078651685	1.33336353751359	0.00275945618522009	0.062903033765905	0	ggctgcgcggtcttcgcgcgCaatcgtcagacgaactcagt	13	13	3	1	rs248793	byfrequency	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	SRD5A1-90	NM_001047	exon1	c.C90G	p.R30R	CGCGCGCAATCGT	.	7	6	0	0	C|0.454;G|0.546	4	0	4	0	0	G	6633779	C	G	6633779	2	3	32	1	0	0	0	0	0	0	0	1	15175	697	25	3		3	SRD5A1	5	6633779	Silent	SNP	C	TCGA-OR-A5KO-01A-11D-A29I-10		6633779	174281481	34	7853										
CDH12	1010	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	21752043	21752043	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0684931506849315	10	0.929330005145667	1.17761452031115	0.574087078651685	1.33336353751359	0.00275945618522009	0.062903033765905	0	cagtgaatcgtatggtggggCagttggatccacatcatttt	12	7	1	1	novel		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	CDH12-92	NM_004061	exon15	c.G2188T	p.A730S	GTGGGGCAGTTGG	.	350	131	162	1	.	0	0	0	0	0	A	21752043	C	A	21752043	3	1	32	1	0	0	0	0	1	0	0	0	3104	710	25	3	200	3	CDH12	5	21752043	Missense_Mutation	SNP	C	TCGA-OR-A5KO-01A-11D-A29I-10	15118264	21752043	159163217	35	7854										
GPR98	84059	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	90124769	90124769	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0684931506849315	10	0.929330005145667	1.17761452031115	0.574087078651685	1.33336353751359	0.00275945618522009	0.062903033765905	0	tctcattgtcaggtaccacaGgttgaagtgtatttttttgt	9	6	2	1	novel		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	GPR98-103	NM_032119	exon77	c.G16377T	p.Q5459H	ACCACAGGTTGAA	.	32	22	27	0	.	0	0	0	0	0	T	90124769	G	T	90124769	3	4	32	1	0	0	0	0	1	0	0	0	6742	991	35	3	16683	3	GPR98	5	90124769	Missense_Mutation	SNP	G	TCGA-OR-A5KO-01A-11D-A29I-10	68372726	90124769	90790491	36	7855										
PCDHB3	56132	ucsc.edu	37	chr5	140482312	140482312	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0684931506849315	10	0.929330005145667	1.17761452031115	0.574087078651685	1.33336353751359	0.00275945618522009	0.062903033765905	0	accgtctacctggtggtggcAttggcctcggtgtcttcgct	13	12	2	0	rs429364	bycluster;byfrequency;by1000genomes	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	PCDHB3-92	NM_018937	exon1	c.A2079G	p.A693A	GGTGGCATTGGCC	.	138	37	11	0	A|0.977;G|0.023	24	20	4	0	0	G	140482312	A	G	140482312	2	3	32	1	0	0	0	0	0	0	0	1	11572	204	8	4		4	PCDHB3	5	140482312	Silent	SNP	A	TCGA-OR-A5KO-01A-11D-A29I-10	50357543	140482312	40432948	37	7856										
ATXN1	6310	hgsc.bcm.edu	37	chr6	16327894	16327894	+	Missense_Mutation	SNP	C	C	A													0.0684931506849315	10	0.929330005145667	1.17761452031115	0.574087078651685	1.33336353751359	0.00275945618522009	0.062903033765905	0	tgctgctgctgctgctgctgCtgctgctgctgctgatgctg					rs201040133		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	ATXN1-93	NM_001128164	exon7	c.G648T	p.Q216H	CTGCTGCTGCTGC	.	76	6	6	0	.	5	5	0	0	0	A	16327894	C	A	16327894	3	1	32	1	0	0	0	0	1	0	0	0	1210	796	28	3	1807	3	ATXN1	6	16327894	Missense_Mutation	SNP	C	TCGA-OR-A5KO-01A-11D-A29I-10		16327894	154787173	38	7857	82	2								
ATXN1	6310	hgsc.bcm.edu	37	chr6	16327900	16327900	+	Missense_Mutation	SNP	C	C	A													0.0684931506849315	10	0.929330005145667	1.17761452031115	0.574087078651685	1.33336353751359	0.00275945618522009	0.062903033765905	0	tgctgctgctgctgctgctgCtgctgctgatgctgatgctg					rs200111316		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	ATXN1-93	NM_001128164	exon7	c.G642T	p.Q214H	CTGCTGCTGCTGC	.	71	6	5	0	.	0	0	0	0	0	A	16327900	C	A	16327900	3	1	32	1	0	0	0	0	1	0	0	0	1210	796	28	3	1813	3	ATXN1	6	16327900	Missense_Mutation	SNP	C	TCGA-OR-A5KO-01A-11D-A29I-10	6	16327900	154787167	39	7858	82	2								
HLA-G	3135	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr6	29797691	29797691	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0684931506849315	10	0.929330005145667	1.17761452031115	0.574087078651685	1.33336353751359	0.00275945618522009	0.062903033765905	0	ctgcggtcgctgctgtgctgTggagaaagaagagctcaggt	16	8	1	3	novel		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	HLA-G-517	NM_002127	exon6	c.T994C	p.W332R	GTGCTGTGGAGAA	.	272	125	163	0	.	0	0	0	0	0	C	29797691	T	C	29797691	3	2	32	1	0	0	0	0	1	0	0	0	7233	1696	59	4	1012	4	HLA-G	6	29797691	Missense_Mutation	SNP	T	TCGA-OR-A5KO-01A-11D-A29I-10	13469791	29797691	141317376	40	7859										
DDR1	780	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	30866949	30866949	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0684931506849315	10	0.929330005145667	1.17761452031115	0.574087078651685	1.33336353751359	0.00275945618522009	0.062903033765905	0	gcaggtgtacctgtcccggcCgcctgcctgcccgcagggcc	14	18	0	0	novel		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	DDR1-1403	NM_013994	exon17	c.C2636T	p.P879L	CCCGGCCGCCTGC	.	198	91	102	0	.	289	128	161	0	0	T	30866949	C	T	30866949	3	4	32	1	0	0	0	0	1	0	0	0	4342	652	23	1	2702	1	DDR1	6	30866949	Missense_Mutation	SNP	C	TCGA-OR-A5KO-01A-11D-A29I-10	1069258	30866949	140248118	41	7860										
CYP21A2	1589	broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr6	32006983	32006983	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0684931506849315	10	0.929330005145667	1.17761452031115	0.574087078651685	1.33336353751359	0.00275945618522009	0.062903033765905	0	ctgctgggcatccgtgactcCatggagccagtggtggagca	15	11	0	1	novel		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	CYP21A2-68	.	.	.	.	TGACTCCATGGAG	.	480	199	214	0	.	1524	832	692	0	0	T	32006983	C	T	32006983	2	4	32	1	0	0	0	0	0	0	0	1	4159	581	21	3		3	CYP21A2	6	32006983	Silent	SNP	C	TCGA-OR-A5KO-01A-11D-A29I-10	1140034	32006983	139108084	42	7861										
DNAH8	1769	bcgsc.ca	37	chr6	38800209	38800209	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0684931506849315	10	0.929330005145667	1.17761452031115	0.574087078651685	1.33336353751359	0.00275945618522009	0.062903033765905	0	actttgcagaagcatatgaaTtggtaatttaagtattttct	7	4	1	2	rs1678729	byfrequency	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	DNAH8-615	NM_001206927	exon31	c.T4300C	p.L1434L	TATGAATTGGTAA	.	164	6	114	1	T|0.758;C|0.242	0	0	0	0	0	C	38800209	T	C	38800209	2	2	32	1	0	0	0	0	0	0	0	1	4618	1490	52	4		4	DNAH8	6	38800209	Silent	SNP	T	TCGA-OR-A5KO-01A-11D-A29I-10	6793226	38800209	132314858	43	7862										
KCNK17	89822	hgsc.bcm.edu	37	chr6	39282036	39282036	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0684931506849315	10	0.929330005145667	1.17761452031115	0.574087078651685	1.33336353751359	0.00275945618522009	0.062903033765905	0	gagcagcaggagcacggtgcTgggcaccgcgcagccccgga	17	14	0	0	rs10947804	byfrequency	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	KCNK17-227	NM_001135111	exon1	c.A61G	p.S21G	CGGTGCTGGGCAC	.	7	7	0	0	T|0.441;C|0.559	0	0	0	0	0	C	39282036	T	C	39282036	3	2	32	1	0	0	0	0	1	0	0	0	8085	1580	55	4	1089	4	KCNK17	6	39282036	Missense_Mutation	SNP	T	TCGA-OR-A5KO-01A-11D-A29I-10	481827	39282036	131833031	44	7863										
AIM1	202	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	106968127	106968127	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0684931506849315	10	0.929330005145667	1.17761452031115	0.574087078651685	1.33336353751359	0.00275945618522009	0.062903033765905	0	agtactgggcaatgaacactCtcattgcacagcagagctcg	10	11	1	2	novel		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	AIM1-139	NM_001624	exon2	c.C1820T	p.S607F	AACACTCTCATTG	.	139	51	108	0	.	1	1	0	0	0	T	106968127	C	T	106968127	3	4	32	1	0	0	0	0	1	0	0	0	430	913	32	3	1826	3	AIM1	6	106968127	Missense_Mutation	SNP	C	TCGA-OR-A5KO-01A-11D-A29I-10	67686091	106968127	64146940	45	7864			2	35		10	9	9940	N	CC_C	5.529657e-16
AIM1	202	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	106968157	106968157	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0684931506849315	10	0.929330005145667	1.17761452031115	0.574087078651685	1.33336353751359	0.00275945618522009	0.062903033765905	0	agcagagctcgcggcaaaatCtggcccacaagtcataccgc	10	14	2	1	novel		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	AIM1-139	NM_001624	exon2	c.C1850T	p.S617F	CAAAATCTGGCCC	.	135	53	108	0	.	1	1	0	0	0	T	106968157	C	T	106968157	3	4	32	1	0	0	0	0	1	0	0	0	430	913	32	3	1856	3	AIM1	6	106968157	Missense_Mutation	SNP	C	TCGA-OR-A5KO-01A-11D-A29I-10	30	106968157	64146910	46	7865			2	35		10	9	9940	N	CC_C	5.529657e-16
AIM1	202	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	106968170	106968170	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0684931506849315	10	0.929330005145667	1.17761452031115	0.574087078651685	1.33336353751359	0.00275945618522009	0.062903033765905	0	gcaaaatctggcccacaagtCataccgccagcatcagagaa	8	13	3	1	novel		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	AIM1-139	NM_001624	exon2	c.C1863T	p.V621V	ACAAGTCATACCG	.	136	47	106	0	.	1	1	0	0	0	T	106968170	C	T	106968170	2	4	32	1	0	0	0	0	0	0	0	1	430	813	29	3		3	AIM1	6	106968170	Silent	SNP	C	TCGA-OR-A5KO-01A-11D-A29I-10	13	106968170	64146897	47	7866			2	35		10	9	9940	N	CC_C	5.529657e-16
AIM1	202	hgsc.bcm.edu;bcgsc.ca	37	chr6	106968184	106968184	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0684931506849315	10	0.929330005145667	1.17761452031115	0.574087078651685	1.33336353751359	0.00275945618522009	0.062903033765905	0	acaagtcataccgccagcatCagagaaaactctgcctattc	6	13	3	1	novel		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	AIM1-139	NM_001624	exon2	c.C1877T	p.S626L	CAGCATCAGAGAA	.	133	46	110	0	.	0	0	0	0	0	T	106968184	C	T	106968184	3	4	32	1	0	0	0	0	1	0	0	0	430	838	29	3	1883	3	AIM1	6	106968184	Missense_Mutation	SNP	C	TCGA-OR-A5KO-01A-11D-A29I-10	14	106968184	64146883	48	7867			2	35		10	9	9940	N	CC_C	5.529657e-16
AIM1	202	hgsc.bcm.edu;bcgsc.ca	37	chr6	106968204	106968204	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0684931506849315	10	0.929330005145667	1.17761452031115	0.574087078651685	1.33336353751359	0.00275945618522009	0.062903033765905	0	cagagaaaactctgcctattCaggctcaaagtcagggcagc	10	11	4	1	novel		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	AIM1-139	NM_001624	exon2	c.C1897T	p.Q633X	CCTATTCAGGCTC	.	147	51	121	0	.	0	0	0	0	0	T	106968204	C	T	106968204	4	4	32	1	0	0	0	0	0	1	0	0	430	827	29	3	1903	3	AIM1	6	106968204	Nonsense_Mutation	SNP	C	TCGA-OR-A5KO-01A-11D-A29I-10	20	106968204	64146863	49	7868			2	35		10	9	9940	N	CC_C	5.529657e-16
AIM1	202	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr6	106968247	106968248	+	Missense_Mutation	DNP	CC	CC	TT													0.0684931506849315	10	0.929330005145667	1.17761452031115	0.574087078651685	1.33336353751359	0.00275945618522009	0.062903033765905	0	aacacccctgatggctgaatCcagtcccaccaactctccca					novel		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	CC	CC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	AIM1-139	NM_001624	exon2	c.C1941T	p.S647F	TGAATCCAGTCCC	.	174	15	147	0	.	0	0	0	0	0	TT	106968248	CC	TT	106968247	3	4	32	1	0	0	0	0	1	0	0	0	430	855	30	3	1946	3	AIM1	6	106968247	Missense_Mutation	DNP	CC	TCGA-OR-A5KO-01A-11D-A29I-10	43	106968247	64146820	50	7869	83	2	2	35		10	9	9940	N	CC_C	5.529657e-16
AIM1	202	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	106968252	106968252	+	Missense_Mutation	SNP	C	C	T													0.0684931506849315	10	0.929330005145667	1.17761452031115	0.574087078651685	1.33336353751359	0.00275945618522009	0.062903033765905	0	ccctgatggctgaatccagtCccaccaactctcccagcagc					novel		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	AIM1-139	NM_001624	exon2	c.C1945T	p.P649S	TCCAGTCCCACCA	.	179	64	149	0	.	2	2	0	0	0	T	106968252	C	T	106968252	3	4	32	1	0	0	0	0	1	0	0	0	430	855	30	3	1951	3	AIM1	6	106968252	Missense_Mutation	SNP	C	TCGA-OR-A5KO-01A-11D-A29I-10	5	106968252	64146815	51	7870	83	2	2	35		10	9	9940	N	CC_C	5.529657e-16
AIM1	202	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	106968291	106968291	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0684931506849315	10	0.929330005145667	1.17761452031115	0.574087078651685	1.33336353751359	0.00275945618522009	0.062903033765905	0	gcggaaatcacttagccactCctcaaaggccagatcagact	8	13	3	2	novel		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	AIM1-139	NM_001624	exon2	c.C1984T	p.P662S	GCCACTCCTCAAA	.	172	61	156	0	.	1	1	0	0	0	T	106968291	C	T	106968291	3	4	32	1	0	0	0	0	1	0	0	0	430	855	30	3	1990	3	AIM1	6	106968291	Missense_Mutation	SNP	C	TCGA-OR-A5KO-01A-11D-A29I-10	39	106968291	64146776	52	7871			2	35		10	9	9940	N	CC_C	5.529657e-16
AIM1	202	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	106968355	106968355	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0684931506849315	10	0.929330005145667	1.17761452031115	0.574087078651685	1.33336353751359	0.00275945618522009	0.062903033765905	0	tgccagccttttgaacatttCtgctggtagtgatgatagtg	11	7	1	3	novel		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	AIM1-139	NM_001624	exon2	c.C2048T	p.S683F	ACATTTCTGCTGG	.	105	35	95	0	.	0	0	0	0	0	T	106968355	C	T	106968355	3	4	32	1	0	0	0	0	1	0	0	0	430	913	32	3	2054	3	AIM1	6	106968355	Missense_Mutation	SNP	C	TCGA-OR-A5KO-01A-11D-A29I-10	64	106968355	64146712	53	7872			2	35		10	9	9940	N	CC_C	5.529657e-16
AIM1	202	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	106978066	106978066	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0684931506849315	10	0.929330005145667	1.17761452031115	0.574087078651685	1.33336353751359	0.00275945618522009	0.062903033765905	0	ttcaggattacagagttagtCacattgacttatttactgaa	7	6	2	3	novel		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	AIM1-139	NM_001624	exon6	c.C3370T	p.H1124Y	GTTAGTCACATTG	.	178	85	100	0	.	0	0	0	0	0	T	106978066	C	T	106978066	3	4	32	1	0	0	0	0	1	0	0	0	430	826	29	3	3392	3	AIM1	6	106978066	Missense_Mutation	SNP	C	TCGA-OR-A5KO-01A-11D-A29I-10	9711	106978066	64137001	54	7873			2	35		10	9	9940	N	CC_C	5.529657e-16
TRAF3IP2	10758	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	111912951	111912951	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0684931506849315	10	0.929330005145667	1.17761452031115	0.574087078651685	1.33336353751359	0.00275945618522009	0.062903033765905	0	gactcagacgcaggctcgctGactgcagagcacccagaagg	13	13	1	4	novel		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	TRAF3IP2-228	NM_147686	exon2	c.C339T	p.V113V	CTCGCTGACTGCA	.	142	70	86	1	.	13	9	4	0	0	A	111912951	G	A	111912951	2	1	32	1	0	0	0	0	0	0	0	1	16479	1277	45	3		3	TRAF3IP2	6	111912951	Silent	SNP	G	TCGA-OR-A5KO-01A-11D-A29I-10	4934885	111912951	59202116	55	7874										
TCP10	6953	bcgsc.ca	37	chr6	167789493	167789493	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0684931506849315	10	0.929330005145667	1.17761452031115	0.574087078651685	1.33336353751359	0.00275945618522009	0.062903033765905	0	cgtctgctcctgcagcgtggTggcctgggaagcctgcactg	15	13	1	0	rs3010590	byfrequency	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	TCP10-89	NM_004610	exon6	c.A649G	p.T217A	GCGTGGTGGCCTG	.	75	6	68	2	T|0.760;C|0.240	0	0	0	0	0	C	167789493	T	C	167789493	3	2	32	1	0	0	0	0	1	0	0	0	15747	1696	59	4	343	4	TCP10	6	167789493	Missense_Mutation	SNP	T	TCGA-OR-A5KO-01A-11D-A29I-10	55876542	167789493	3325574	56	7875										
MICALL2	79778	hgsc.bcm.edu	37	chr7	1484572	1484572	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0684931506849315	10	0.929330005145667	1.17761452031115	0.574087078651685	1.33336353751359	0.00275945618522009	0.062903033765905	0	gccactcggggggctcccccAccctggggtgtggccgggcg	18	16	0	0	rs10435184		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	MICALL2-90	NM_182924	exon6	c.T1134C	p.G378G	TCCCCCACCCTGG	.	7	7	0	0	A|0.009;G|0.991	6	0	6	0	0	G	1484572	A	G	1484572	2	3	32	1	0	0	0	0	0	0	0	1	9602	146	6	4		4	MICALL2	7	1484572	Silent	SNP	A	TCGA-OR-A5KO-01A-11D-A29I-10		1484572	157654091	57	7876										
RADIL	55698	broad.mit.edu	37	chr7	4843213	4843214	+	In_Frame_Ins	INS	-	-	CTGCCAGGG													0.0684931506849315	10	0.929330005145667	1.17761452031115	0.574087078651685	1.33336353751359	0.00275945618522009	0.062903033765905	0	gggaggccccactgccaggcINSctgccagggctgccggggct					novel		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	RADIL-994	NM_018059	exon11	c.2463_2464insCCCTGGCAG	p.R821delinsSPGR	GCCAGGCCTGCCA	.	68	15	10	0	.	0	0	0	0	0	CTGCCAGGG	4843214	-	CTGCCAGGG	4843213	7	5	32	1	0	1	1	0	0	0	0	0	13032	738	26	0	784	0	RADIL	7	4843213	In_Frame_Ins	INS	-	TCGA-OR-A5KO-01A-11D-A29I-10	3358641	4843213	154295450	58	7877										
RADIL	55698	hgsc.bcm.edu	37	chr7	4874729	4874729	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0684931506849315	10	0.929330005145667	1.17761452031115	0.574087078651685	1.33336353751359	0.00275945618522009	0.062903033765905	0	cagcctccccgcggcctggcCgctgtccgggagcggttgcc	15	18	0	0	rs144507770		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	RADIL-994	NM_018059	exon4	c.G925C	p.G309R	CCTGGCCGCTGTC	.	57	28	0	0	C|0.987;G|0.013	1	0	1	0	0	G	4874729	C	G	4874729	3	3	32	1	0	0	0	0	1	0	0	0	13032	652	23	2	2350	2	RADIL	7	4874729	Missense_Mutation	SNP	C	TCGA-OR-A5KO-01A-11D-A29I-10	31516	4874729	154263934	59	7878										
RADIL	55698	hgsc.bcm.edu	37	chr7	4876100	4876100	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0684931506849315	10	0.929330005145667	1.17761452031115	0.574087078651685	1.33336353751359	0.00275945618522009	0.062903033765905	0	tgggcggcagcgggcagggcGttcactgggctcaggctggt	20	10	2	0	rs138811640		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	RADIL-994	NM_018059	exon3	c.C672T	p.N224N	CAGGGCGTTCACT	.	26	21	0	0	G|0.987;A|0.013	2	2	0	0	0	A	4876100	G	A	4876100	2	1	32	1	0	0	0	0	0	0	0	1	13032	1136	40	1		1	RADIL	7	4876100	Silent	SNP	G	TCGA-OR-A5KO-01A-11D-A29I-10	1371	4876100	154262563	60	7879										
USP42	84132	hgsc.bcm.edu	37	chr7	6193464	6193464	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0684931506849315	10	0.929330005145667	1.17761452031115	0.574087078651685	1.33336353751359	0.00275945618522009	0.062903033765905	0	cagccccgccgccgaatcccTggaggagccagatgcggccg	14	17	0	1	rs61732616	byfrequency	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	USP42-659	NM_032172	exon15	c.T2279G	p.L760R	AATCCCTGGAGGA	.	34	14	2	0	T|0.731;G|0.269	8	4	4	0	0	G	6193464	T	G	6193464	3	3	32	1	0	0	0	0	1	0	0	0	17111	1580	55	5		5	USP42	7	6193464	Missense_Mutation	SNP	T	TCGA-OR-A5KO-01A-11D-A29I-10	1317364	6193464	152945199	61	7880										
REPIN1	29803	hgsc.bcm.edu	37	chr7	150069548	150069548	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0684931506849315	10	0.929330005145667	1.17761452031115	0.574087078651685	1.33336353751359	0.00275945618522009	0.062903033765905	0	gagcggcccttcacctgcgcCgagtgcgggaagaacttcgg	15	13	1	1	rs187957325	by1000genomes	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	REPIN1-69	NM_001099695	exon3	c.C1389G	p.A463A	CTGCGCCGAGTGC	.	20	10	0	0	C|0.995;G|0.005	39	21	18	0	0	G	150069548	C	G	150069548	2	3	32	1	0	0	0	0	0	0	0	1	13262	639	23	2		2	REPIN1	7	150069548	Silent	SNP	C	TCGA-OR-A5KO-01A-11D-A29I-10	143876084	150069548	9069115	62	7881										
CRYGN	155051	hgsc.bcm.edu	37	chr7	151136989	151136989	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0684931506849315	10	0.929330005145667	1.17761452031115	0.574087078651685	1.33336353751359	0.00275945618522009	0.062903033765905	0	agggacgcactcaccttcccCgagcgctgcgccatggtgcg	13	16	1	0	rs116501631	byfrequency	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	CRYGN-90	NM_144727	exon1	c.G15A	p.S5S	CTTCCCCGAGCGC	.	47	21	3	0	C|0.983;T|0.017	0	0	0	0	0	T	151136989	C	T	151136989	2	4	32	1	0	0	0	0	0	0	0	1	3924	639	23	1		1	CRYGN	7	151136989	Silent	SNP	C	TCGA-OR-A5KO-01A-11D-A29I-10	1067441	151136989	8001674	63	7882										
FER1L6	654463	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr8	125109589	125109589	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0684931506849315	10	0.929330005145667	1.17761452031115	0.574087078651685	1.33336353751359	0.00275945618522009	0.062903033765905	0	cctgttgacatctctccaagGcgacccaaagggtatgtcag	10	12	2	1	novel		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	FER1L6-100	NM_001039112	exon36	c.G4773A	p.R1591R	TCCAAGGCGACCC	.	146	61	100	0	.	0	0	0	0	0	A	125109589	G	A	125109589	2	1	32	1	0	0	0	0	0	0	0	1	5834	1194	42	3		3	FER1L6	8	125109589	Silent	SNP	G	TCGA-OR-A5KO-01A-11D-A29I-10		125109589	21254433	64	7883										
TOP1MT	116447	ucsc.edu;bcgsc.ca	37	chr8	144411548	144411548	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0684931506849315	10	0.929330005145667	1.17761452031115	0.574087078651685	1.33336353751359	0.00275945618522009	0.062903033765905	0	agtcattgaagaagttcttcCggaaaacctcctttgttgtg	9	8	2	2	rs147714048	byfrequency	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	TOP1MT-91	NM_052963	exon3	c.G332A	p.R111Q	TTCTTCCGGAAAA	.	199	67	124	3	C|0.999;T|0.001	16	8	8	0	0	T	144411548	C	T	144411548	3	4	32	1	0	0	0	0	1	0	0	0	16402	652	23	1	1521	1	TOP1MT	8	144411548	Missense_Mutation	SNP	C	TCGA-OR-A5KO-01A-11D-A29I-10	19301959	144411548	1952474	65	7884										
PLEC	5339	hgsc.bcm.edu	37	chr8	144992385	144992385	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0684931506849315	10	0.929330005145667	1.17761452031115	0.574087078651685	1.33336353751359	0.00275945618522009	0.062903033765905	0	aggagcagctggccggtgccGtcgtcacgacggcaccgcct	15	15	1	0	novel		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	PLEC-141	NM_201380	exon32	c.C12015T	p.D4005D	GGTGCCGTCGTCA	.	13	7	0	0	.	35	20	15	0	0	A	144992385	G	A	144992385	2	1	32	1	0	0	0	0	0	0	0	1	12081	1136	40	1		1	PLEC	8	144992385	Silent	SNP	G	TCGA-OR-A5KO-01A-11D-A29I-10	580837	144992385	1371637	66	7885										
ERMP1	79956	hgsc.bcm.edu	37	chr9	5832728	5832728	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0684931506849315	10	0.929330005145667	1.17761452031115	0.574087078651685	1.33336353751359	0.00275945618522009	0.062903033765905	0	aactccccgcggtgtccagcGgccccgcgtagcacgagctg	13	17	0	0	rs1131727	byfrequency	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	ERMP1-69	NM_024896	exon1	c.C300G	p.A100A	TCCAGCGGCCCCG	.	14	14	1	0	G|0.572;C|0.428	2	0	2	0	0	C	5832728	G	C	5832728	2	2	32	1	0	0	0	0	0	0	0	1	5249	1103	39	2		2	ERMP1	9	5832728	Silent	SNP	G	TCGA-OR-A5KO-01A-11D-A29I-10		5832728	135380703	67	7886										
ALG2	85365	hgsc.bcm.edu	37	chr9	101984048	101984048	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0684931506849315	10	0.929330005145667	1.17761452031115	0.574087078651685	1.33336353751359	0.00275945618522009	0.062903033765905	0	cagatcttcacgctacacccGcgcgcctgcagcgccagcgc	10	19	2	1	rs35055733	byfrequency	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	ALG2-92	NM_033087	exon1	c.C129G	p.R43R	ACACCCGCGCGCC	.	17	11	0	0	G|0.984;C|0.016	39	14	25	0	0	C	101984048	G	C	101984048	2	2	32	1	0	0	0	0	0	0	0	1	519	1074	38	2		2	ALG2	9	101984048	Silent	SNP	G	TCGA-OR-A5KO-01A-11D-A29I-10	96151320	101984048	39229383	68	7887										
PPAPDC3	84814	hgsc.bcm.edu	37	chr9	134183371	134183371	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0684931506849315	10	0.929330005145667	1.17761452031115	0.574087078651685	1.33336353751359	0.00275945618522009	0.062903033765905	0	ctcatcaagcggcgcggcccGtacgagacgagccccagcct	12	17	2	1	rs61731644	byfrequency	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	PPAPDC3-153	NM_032728	exon2	c.G513A	p.P171P	CGGCCCGTACGAG	.	23	12	0	0	G|0.993;A|0.007	10	0	10	0	0	A	134183371	G	A	134183371	2	1	32	1	0	0	0	0	0	0	0	1	12325	1132	40	1		1	PPAPDC3	9	134183371	Silent	SNP	G	TCGA-OR-A5KO-01A-11D-A29I-10	32199323	134183371	7030060	69	7888										
KIAA1984	84960	hgsc.bcm.edu	37	chr9	139694613	139694613	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0684931506849315	10	0.929330005145667	1.17761452031115	0.574087078651685	1.33336353751359	0.00275945618522009	0.062903033765905	0	ccagcaaggaggagctgcggCtgctgcaggtggagaggcgg	20	9	0	1	rs35342663	byfrequency	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	KIAA1984-91	NM_001039374	exon4	c.C430A	p.L144M	CTGCGGCTGCTGC	.	31	22	0	0	C|0.928;A|0.072	0	0	0	0	0	A	139694613	C	A	139694613	3	1	32	1	0	0	0	0	1	0	0	0	8287	796	28	3	444	3	KIAA1984	9	139694613	Missense_Mutation	SNP	C	TCGA-OR-A5KO-01A-11D-A29I-10	5511242	139694613	1518818	70	7889										
MYO3A	53904	bcgsc.ca	37	chr10	26463130	26463130	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0684931506849315	10	0.929330005145667	1.17761452031115	0.574087078651685	1.33336353751359	0.00275945618522009	0.062903033765905	0	agacatctgtagttacccagCgtgcaccgatatgcagccag	10	12	1	1	rs1999240	byfrequency	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	MYO3A-1007	NM_017433	exon30	c.C3937A	p.R1313S	ACCCAGCGTGCAC	.	333	9	173	1	C|0.401;A|0.599	4	4	0	0	0	A	26463130	C	A	26463130	3	1	32	1	0	0	0	0	1	0	0	0	10104	768	27	2	4047	2	MYO3A	10	26463130	Missense_Mutation	SNP	C	TCGA-OR-A5KO-01A-11D-A29I-10		26463130	109071617	71	7890										
ZNF485	220992	bcgsc.ca	37	chr10	44111806	44111806	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0684931506849315	10	0.929330005145667	1.17761452031115	0.574087078651685	1.33336353751359	0.00275945618522009	0.062903033765905	0	acttctgaagcatctgttctGggagagcgaacgaaaagtgt	12	7	3	2	rs10899839	byfrequency	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	ZNF485-90	NM_145312	exon5	c.G315A	p.L105L	TGTTCTGGGAGAG	.	257	8	175	0	G|0.681;A|0.319	3	3	0	0	0	A	44111806	G	A	44111806	2	1	32	1	0	0	0	0	0	0	0	1	17975	1335	47	3		3	ZNF485	10	44111806	Silent	SNP	G	TCGA-OR-A5KO-01A-11D-A29I-10	17648676	44111806	91422941	72	7891										
FAM21B	55747	bcgsc.ca	37	chr10	47915898	47915898	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0684931506849315	10	0.929330005145667	1.17761452031115	0.574087078651685	1.33336353751359	0.00275945618522009	0.062903033765905	0	gttaccttatcttccagcaaAaatctcaagccctcatcaga	4	13	4	1	rs61856727	bycluster;byfrequency	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	FAM21B-23	NM_018232	exon15	c.A1305G	p.K435K	CAGCAAAAATCTC	.	74	39	125	12	A|0.375;G|0.625	1	0	1	0	0	G	47915898	A	G	47915898	2	3	32	1	0	0	0	0	0	0	0	1	5557	11	1	4		4	FAM21B	10	47915898	Silent	SNP	A	TCGA-OR-A5KO-01A-11D-A29I-10	3804092	47915898	87618849	73	7892										
CDHR1	92211	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	85978991	85978991	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0684931506849315	10	0.929330005145667	1.17761452031115	0.574087078651685	1.33336353751359	0.00275945618522009	0.062903033765905	0	tcaatctgagtaatgtgaatCtgtactctagagtttttcaa	7	6	5	3	rs7895270	byfrequency	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	CDHR1-91	NM_001171971	exon17	c.C2197T	p.L733L	GTGAATCTGTACT	.	46	7	36	0	C|0.735;T|0.265	0	0	0	0	0	T	85978991	C	T	85978991	2	4	32	1	0	0	0	0	0	0	0	1	3124	912	32	3		3	CDHR1	10	85978991	Silent	SNP	C	TCGA-OR-A5KO-01A-11D-A29I-10	38063093	85978991	49555756	74	7893										
RRP12	23223	bcgsc.ca	37	chr10	99155984	99155984	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0684931506849315	10	0.929330005145667	1.17761452031115	0.574087078651685	1.33336353751359	0.00275945618522009	0.062903033765905	0	cacccactcaccagagcagcGaagtactcagtctccgtctc	7	17	4	1	rs3814553	byfrequency	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	RRP12-92	NM_001145114	exon3	c.C444T	p.F148F	AGCAGCGAAGTAC	.	140	7	112	1	G|0.618;A|0.382	0	0	0	0	0	A	99155984	G	A	99155984	2	1	32	1	0	0	0	0	0	0	0	1	13721	1049	37	1		1	RRP12	10	99155984	Silent	SNP	G	TCGA-OR-A5KO-01A-11D-A29I-10	13176993	99155984	36378763	75	7894										
GSTO2	119391	bcgsc.ca	37	chr10	106039185	106039185	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0684931506849315	10	0.929330005145667	1.17761452031115	0.574087078651685	1.33336353751359	0.00275945618522009	0.062903033765905	0	gatgtgggagagaatgcactAatctgaaggcagccctgcgt	14	8	1	2	rs156697	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	GSTO2-91	NM_183239	exon5	c.A424G	p.N142D	TGCACTAATCTGA	.	132	5	117	0	A|0.537;G|0.463	4	4	0	0	0	G	106039185	A	G	106039185	3	3	32	1	0	0	0	0	1	0	0	0	6864	362	13	4	438	4	GSTO2	10	106039185	Missense_Mutation	SNP	A	TCGA-OR-A5KO-01A-11D-A29I-10	6883201	106039185	29495562	76	7895										
JAKMIP3	282973	bcgsc.ca	37	chr10	133954011	133954011	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0684931506849315	10	0.929330005145667	1.17761452031115	0.574087078651685	1.33336353751359	0.00275945618522009	0.062903033765905	0	gaggcttccctggaatccgaCggctcctccgtctcttacca	9	16	1	0	rs2818387	byfrequency	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	JAKMIP3-23	NM_001105521	exon9	c.C1401T	p.D467D	ATCCGACGGCTCC	.	323	11	125	0	C|0.497;T|0.503	0	0	0	0	0	T	133954011	C	T	133954011	2	4	32	1	0	0	0	0	0	0	0	1	7963	535	19	1		1	JAKMIP3	10	133954011	Silent	SNP	C	TCGA-OR-A5KO-01A-11D-A29I-10	27914826	133954011	1580736	77	7896										
MUC2	4583	broad.mit.edu	37	chr11	1092947	1092947	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0684931506849315	10	0.929330005145667	1.17761452031115	0.574087078651685	1.33336353751359	0.00275945618522009	0.062903033765905	0	atcgacacccatcaccaccaCcactacggtgaccccaaccc	4	21	1	1	novel		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	MUC2-90	NM_002457	exon30	c.C4766A	p.T1589N	CCACCACCACTAC	.	152	7	121	1	.	0	0	0	0	0	A	1092947	C	A	1092947	3	1	32	1	0	0	0	0	1	0	0	0	10003	507	18	3	4884	3	MUC2	11	1092947	Missense_Mutation	SNP	C	TCGA-OR-A5KO-01A-11D-A29I-10		1092947	133913569	78	7897										
MUC5B	727897	hgsc.bcm.edu	37	chr11	1253980	1253980	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0684931506849315	10	0.929330005145667	1.17761452031115	0.574087078651685	1.33336353751359	0.00275945618522009	0.062903033765905	0	caagggcgtacagctcagcgActggagggacggcgtctgca	16	11	2	0	rs202127660		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	.	NM_002458	exon17	c.A2045G	p.D682G	TCAGCGACTGGAG	.	82	6	12	0	.	0	0	0	0	0	G	1253980	A	G	1253980	3	3	32	1	0	0	0	0	1	0	0	0	10007	275	10	4	2120	4	MUC5B	11	1253980	Missense_Mutation	SNP	A	TCGA-OR-A5KO-01A-11D-A29I-10	161033	1253980	133752536	79	7898										
MUC5B	727897	hgsc.bcm.edu	37	chr11	1271223	1271223	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0684931506849315	10	0.929330005145667	1.17761452031115	0.574087078651685	1.33336353751359	0.00275945618522009	0.062903033765905	0	gtgctgaccacgaaggccacCacgacaagggccaccagttc	11	15	0	1	novel		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	.	NM_002458	exon31	c.C13113G	p.T4371T	GGCCACCACGACA	.	400	34	296	0	.	0	0	0	0	0	G	1271223	C	G	1271223	2	3	32	1	0	0	0	0	0	0	0	1	10007	581	21	3		3	MUC5B	11	1271223	Silent	SNP	C	TCGA-OR-A5KO-01A-11D-A29I-10	17243	1271223	133735293	80	7899										
SYT8	90019	hgsc.bcm.edu	37	chr11	1858572	1858572	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0684931506849315	10	0.929330005145667	1.17761452031115	0.574087078651685	1.33336353751359	0.00275945618522009	0.062903033765905	0	cccggcggcccattgcccagCggcaccccctgcggccagcc	12	22	0	0	rs2292474	byfrequency	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	SYT8-91	NM_138567	exon9	c.C1117T	p.R373W	GCCCAGCGGCACC	.	8	8	0	0	C|0.602;T|0.398	0	0	0	0	0	T	1858572	C	T	1858572	3	4	32	1	0	0	0	0	1	0	0	0	15517	759	27	1	1151	1	SYT8	11	1858572	Missense_Mutation	SNP	C	TCGA-OR-A5KO-01A-11D-A29I-10	587349	1858572	133147944	81	7900										
OR56A4	120793	bcgsc.ca	37	chr11	6023818	6023818	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0684931506849315	10	0.929330005145667	1.17761452031115	0.574087078651685	1.33336353751359	0.00275945618522009	0.062903033765905	0	tggtcagtgatgatagacggGtatctcaatggatggcagat	14	5	2	4	rs10839221	byfrequency	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	OR56A4-69	NM_001005179	exon1	c.C561T	p.Y187Y	AGACGGGTATCTC	.	171	8	202	2	G|0.801;A|0.199	0	0	0	0	0	A	6023818	G	A	6023818	2	1	32	1	0	0	0	0	0	0	0	1	11164	1256	44	3		3	OR56A4	11	6023818	Silent	SNP	G	TCGA-OR-A5KO-01A-11D-A29I-10	4165246	6023818	128982698	82	7901										
OR56A4	120793	ucsc.edu;bcgsc.ca	37	chr11	6023924	6023924	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0684931506849315	10	0.929330005145667	1.17761452031115	0.574087078651685	1.33336353751359	0.00275945618522009	0.062903033765905	0	tgatgaacatctggaggaagCaggctgggaagctgatcgac	15	7	1	3	novel		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	OR56A4-69	NM_001005179	exon1	c.G455A	p.C152Y	AGGAAGCAGGCTG	.	188	163	183	2	.	0	0	0	0	0	T	6023924	C	T	6023924	3	4	32	1	0	0	0	0	1	0	0	0	11164	710	25	3	644	3	OR56A4	11	6023924	Missense_Mutation	SNP	C	TCGA-OR-A5KO-01A-11D-A29I-10	106	6023924	128982592	83	7902										
USH1C	10083	bcgsc.ca	37	chr11	17542439	17542439	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0684931506849315	10	0.929330005145667	1.17761452031115	0.574087078651685	1.33336353751359	0.00275945618522009	0.062903033765905	0	tttggcttgcgaaggggtacTgggtgtacctcagcagtgat	15	7	1	1	rs2240487	byfrequency	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	USH1C-91	NM_005709	exon14	c.A1188G	p.P396P	GGGTACTGGGTGT	.	173	9	216	0	C|0.518;T|0.482	0	0	0	0	0	C	17542439	T	C	17542439	2	2	32	1	0	0	0	0	0	0	0	1	17072	1567	55	4		4	USH1C	11	17542439	Silent	SNP	T	TCGA-OR-A5KO-01A-11D-A29I-10	11518515	17542439	117464077	84	7903										
EHBP1L1	254102	bcgsc.ca	37	chr11	65351074	65351074	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0684931506849315	10	0.929330005145667	1.17761452031115	0.574087078651685	1.33336353751359	0.00275945618522009	0.062903033765905	0	acttttaaggcccaggaagcGgaggctggggtcttgggaaa	16	7	1	0	rs10896018	byfrequency	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	EHBP1L1-69	NM_001099409	exon9	c.G2931A	p.A977A	GGAAGCGGAGGCT	.	62	5	67	0	G|0.706;A|0.294	1	1	0	0	0	A	65351074	G	A	65351074	2	1	32	1	0	0	0	0	0	0	0	1	4987	1103	39	1		1	EHBP1L1	11	65351074	Silent	SNP	G	TCGA-OR-A5KO-01A-11D-A29I-10	47808635	65351074	69655442	85	7904										
PRKRIR	5612	hgsc.bcm.edu	37	chr11	76072085	76072085	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0684931506849315	10	0.929330005145667	1.17761452031115	0.574087078651685	1.33336353751359	0.00275945618522009	0.062903033765905	0	ttgttggtattgcattatctCgaagaactgtcctataagga	9	6	1	1	rs76214254	byfrequency	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	PRKRIR-93	NM_004705	exon3	c.G233A	p.R78Q	TTATCTCGAAGAA	.	49	4	33	0	C|0.999;T|0.001	6	6	0	0	0	T	76072085	C	T	76072085	3	4	32	1	0	0	0	0	1	0	0	0	12558	884	31	1	2064	1	PRKRIR	11	76072085	Missense_Mutation	SNP	C	TCGA-OR-A5KO-01A-11D-A29I-10	10721011	76072085	58934431	86	7905										
C11orf63	79864	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	122817236	122817236	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0684931506849315	10	0.929330005145667	1.17761452031115	0.574087078651685	1.33336353751359	0.00275945618522009	0.062903033765905	0	tcttcttctgacagccagacGgttagagcttctccagattc	8	12	4	4	novel		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	C11orf63-93	NM_024806	exon6	c.G1665T	p.T555T	CCAGACGGTTAGA	.	99	90	113	0	.	0	0	0	0	0	T	122817236	G	T	122817236	2	4	32	1	0	0	0	0	0	0	0	1	1658	1103	39	2		2	C11orf63	11	122817236	Silent	SNP	G	TCGA-OR-A5KO-01A-11D-A29I-10	46745151	122817236	12189280	87	7906										
FOXM1	2305	bcgsc.ca	37	chr12	2968169	2968169	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0684931506849315	10	0.929330005145667	1.17761452031115	0.574087078651685	1.33336353751359	0.00275945618522009	0.062903033765905	0	ggggtcagaggcaccctgggAggtttgtactgggctgaaat	17	7	1	2	rs3742076	byfrequency	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	FOXM1-227	NM_202002	exon10	c.T2041C	p.S681P	CCTGGGAGGTTTG	.	13	12	11	0	A|0.714;G|0.286	22	0	22	0	0	G	2968169	A	G	2968169	3	3	32	1	0	0	0	0	1	0	0	0	6037	304	11	4	368	4	FOXM1	12	2968169	Missense_Mutation	SNP	A	TCGA-OR-A5KO-01A-11D-A29I-10		2968169	130883726	88	7907										
TAS2R43	259289	bcgsc.ca	37	chr12	11244126	11244126	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0684931506849315	10	0.929330005145667	1.17761452031115	0.574087078651685	1.33336353751359	0.00275945618522009	0.062903033765905	0	gtaaatggcacataacaagaGgaaggagatcacagtttgca	11	6	1	2	rs113410031	byfrequency	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	TAS2R43-1	NM_176884	exon1	c.C703T	p.L235F	ACAAGAGGAAGGA	.	36	18	124	5	G|0.663;A|0.337	0	0	0	0	0	A	11244126	G	A	11244126	3	1	32	1	0	0	0	0	1	0	0	0	15618	1000	35	3	230	3	TAS2R43	12	11244126	Missense_Mutation	SNP	G	TCGA-OR-A5KO-01A-11D-A29I-10	8275957	11244126	122607769	89	7908			3	36		5	5	562	N	G_A	2.015866e-12
TAS2R43	259289	bcgsc.ca	37	chr12	11244149	11244149	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0684931506849315	10	0.929330005145667	1.17761452031115	0.574087078651685	1.33336353751359	0.00275945618522009	0.062903033765905	0	aggagatcacagtttgcaaaGcttttatgtggaccttggtg	12	6	1	1	rs73064964		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	TAS2R43-1	NM_176884	exon1	c.C680T	p.A227V	TGCAAAGCTTTTA	.	33	19	116	5	.	0	0	0	0	0	A	11244149	G	A	11244149	3	1	32	1	0	0	0	0	1	0	0	0	15618	971	34	3	253	3	TAS2R43	12	11244149	Missense_Mutation	SNP	G	TCGA-OR-A5KO-01A-11D-A29I-10	23	11244149	122607746	90	7909			3	36		5	5	562	N	G_A	2.015866e-12
TAS2R43	259289	bcgsc.ca	37	chr12	11244169	11244169	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0684931506849315	10	0.929330005145667	1.17761452031115	0.574087078651685	1.33336353751359	0.00275945618522009	0.062903033765905	0	gcttttatgtggaccttggtGctgggatcttgagatccttt	12	7	1	1	rs201144595		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	TAS2R43-1	NM_176884	exon1	c.C660T	p.S220S	CTTGGTGCTGGGA	.	36	19	111	4	.	0	0	0	0	0	A	11244169	G	A	11244169	2	1	32	1	0	0	0	0	0	0	0	1	15618	1310	46	3		3	TAS2R43	12	11244169	Silent	SNP	G	TCGA-OR-A5KO-01A-11D-A29I-10	20	11244169	122607726	91	7910			3	36		5	5	562	N	G_A	2.015866e-12
TAS2R43	259289	bcgsc.ca	37	chr12	11244190	11244190	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0684931506849315	10	0.929330005145667	1.17761452031115	0.574087078651685	1.33336353751359	0.00275945618522009	0.062903033765905	0	ctgggatcttgagatcctttAccatggagctgcatcttctt	9	10	3	1	rs202034865	byfrequency	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	TAS2R43-1	NM_176884	exon1	c.T639C	p.G213G	TCCTTTACCATGG	.	35	19	104	5	A|0.321;G|0.679	0	0	0	0	0	G	11244190	A	G	11244190	2	3	32	1	0	0	0	0	0	0	0	1	15618	378	14	4		4	TAS2R43	12	11244190	Silent	SNP	A	TCGA-OR-A5KO-01A-11D-A29I-10	21	11244190	122607705	92	7911			3	36		5	5	562	N	G_A	2.015866e-12
TAS2R43	259289	bcgsc.ca	37	chr12	11244687	11244687	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0684931506849315	10	0.929330005145667	1.17761452031115	0.574087078651685	1.33336353751359	0.00275945618522009	0.062903033765905	0	ggagaccgccagagcagtgaGaatttggtcagcaaaggaga	15	7	1	4	rs113197337		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	TAS2R43-1	NM_176884	exon1	c.C142G	p.L48V	CAGTGAGAATTTG	.	26	21	73	7	.	0	0	0	0	0	C	11244687	G	C	11244687	3	2	32	1	0	0	0	0	1	0	0	0	15618	942	33	3	791	3	TAS2R43	12	11244687	Missense_Mutation	SNP	G	TCGA-OR-A5KO-01A-11D-A29I-10	497	11244687	122607208	93	7912			3	36		5	5	562	N	G_A	2.015866e-12
PRB4	5545	ucsc.edu	37	chr12	11461596	11461596	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0684931506849315	10	0.929330005145667	1.17761452031115	0.574087078651685	1.33336353751359	0.00275945618522009	0.062903033765905	0	ggggtaccttgggactggttTcctccttgtgggggtggtct	17	8	1	0	rs59021567		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	PRB4-91	NM_001261399	exon3	c.A321C	p.G107G	CTGGTTTCCTCCT	.	34	13	24	3	T|0.250;G|0.750	0	0	0	0	0	G	11461596	T	G	11461596	2	3	32	1	0	0	0	0	0	0	0	1	12477	1770	62	5		5	PRB4	12	11461596	Silent	SNP	T	TCGA-OR-A5KO-01A-11D-A29I-10	216909	11461596	122390299	94	7913										
SLCO1B1	10599	bcgsc.ca	37	chr12	21331549	21331549	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0684931506849315	10	0.929330005145667	1.17761452031115	0.574087078651685	1.33336353751359	0.00275945618522009	0.062903033765905	0	gtcatacatgtggatatatgTgttcatgggtaatatgcttc	10	5	2	0	rs4149056	byfrequency	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	SLCO1B1-97	NM_006446	exon6	c.T521C	p.V174A	TATATGTGTTCAT	.	197	6	218	2	T|0.890;C|0.110	0	0	0	0	0	C	21331549	T	C	21331549	3	2	32	1	0	0	0	0	1	0	0	0	14758	1696	59	4	539	4	SLCO1B1	12	21331549	Missense_Mutation	SNP	T	TCGA-OR-A5KO-01A-11D-A29I-10	9869953	21331549	112520346	95	7914										
SENP1	29843	bcgsc.ca	37	chr12	48477416	48477416	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0684931506849315	10	0.929330005145667	1.17761452031115	0.574087078651685	1.33336353751359	0.00275945618522009	0.062903033765905	0	cgcctctgagttttcttgggGctcaaaagacttcgacgaca	10	11	3	2	novel		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	SENP1-660	NM_001267594	exon6	c.C510A	p.S170R	CTTGGGGCTCAAA	.	90	6	84	0	.	5	5	0	0	0	T	48477416	G	T	48477416	3	4	32	1	0	0	0	0	1	0	0	0	14081	1194	42	3	1473	3	SENP1	12	48477416	Missense_Mutation	SNP	G	TCGA-OR-A5KO-01A-11D-A29I-10	27145867	48477416	85374479	96	7915										
MLL2	8085	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	49445552	49445552	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0684931506849315	10	0.929330005145667	1.17761452031115	0.574087078651685	1.33336353751359	0.00275945618522009	0.062903033765905	0	gacataggtgattcttcaggTggtggggacataggcgagtc	16	6	2	1	novel		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	MLL2-612	NM_003482	exon10	c.A1914C	p.P638P	TTCAGGTGGTGGG	.	22	16	39	1	.	3	0	3	0	0	G	49445552	T	G	49445552	2	3	32	1	0	0	0	0	0	0	0	1	9649	1683	59	5		5	MLL2	12	49445552	Silent	SNP	T	TCGA-OR-A5KO-01A-11D-A29I-10	968136	49445552	84406343	97	7916										
SLC35E3	55508	hgsc.bcm.edu;bcgsc.ca	37	chr12	69153001	69153001	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0684931506849315	10	0.929330005145667	1.17761452031115	0.574087078651685	1.33336353751359	0.00275945618522009	0.062903033765905	0	atcaatttattggatcattgGgaacacttcacctgtcacgt	7	9	4	0	novel		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	SLC35E3-514	NM_018656	exon4	c.G737T	p.G246V	TCATTGGGAACAC	.	54	4	57	0	.	8	8	0	0	0	T	69153001	G	T	69153001	3	4	32	1	0	0	0	0	1	0	0	0	14621	1232	43	3	751	3	SLC35E3	12	69153001	Missense_Mutation	SNP	G	TCGA-OR-A5KO-01A-11D-A29I-10	19707449	69153001	64698894	98	7917										
DTX1	1840	bcgsc.ca	37	chr12	113533150	113533150	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0684931506849315	10	0.929330005145667	1.17761452031115	0.574087078651685	1.33336353751359	0.00275945618522009	0.062903033765905	0	ggccctgagcaccccaacccCgggaagaagttcaccgcaag	11	16	1	2	rs61758446	byfrequency	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	DTX1-659	NM_004416	exon8	c.C1569T	p.P523P	CAACCCCGGGAAG	.	73	4	71	1	C|0.988;T|0.012	0	0	0	0	0	T	113533150	C	T	113533150	2	4	32	1	0	0	0	0	0	0	0	1	4804	639	23	1		1	DTX1	12	113533150	Silent	SNP	C	TCGA-OR-A5KO-01A-11D-A29I-10	44380149	113533150	20318745	99	7918										
XPO4	64328	bcgsc.ca	37	chr13	21374333	21374333	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0684931506849315	10	0.929330005145667	1.17761452031115	0.574087078651685	1.33336353751359	0.00275945618522009	0.062903033765905	0	aaagtgacaaggagctgcacAgtgtcatttgcaaggtcctg	12	8	1	1	rs9579954	byfrequency	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	XPO4-272	NM_022459	exon15	c.T2109C	p.T703T	CTGCACAGTGTCA	.	118	5	129	0	A|0.912;G|0.088	3	3	0	0	0	G	21374333	A	G	21374333	2	3	32	1	0	0	0	0	0	0	0	1	17484	175	7	4		4	XPO4	13	21374333	Silent	SNP	A	TCGA-OR-A5KO-01A-11D-A29I-10		21374333	93795545	100	7919										
SLITRK5	26050	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr13	88330510	88330517	+	Frame_Shift_Del	DEL	GCCAGTTC	GCCAGTTC	-													0.0684931506849315	10	0.929330005145667	1.17761452031115	0.574087078651685	1.33336353751359	0.00275945618522009	0.062903033765905	0	ggaaaaacagaccacgtttaGccagttctaaaagcaaagaa					novel		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	GCCAGTTC	GCCAGTTC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	SLITRK5-94	NM_015567	exon2	c.2867_2874del	p.956_958del	CGTTTAGCCAGTT	.	17	14	47	0	.	0	0	0	0	0	-	88330517	GCCAGTTC	-	88330510	7	5	32	1	0	1	0	1	0	0	0	0	14781	971	34	0	2869	0	SLITRK5	13	88330510	Frame_Shift_Del	DEL	GCCAGTTC	TCGA-OR-A5KO-01A-11D-A29I-10	66956177	88330510	26839368	101	7920										
GAS6	2621	hgsc.bcm.edu	37	chr13	114525009	114525009	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0684931506849315	10	0.929330005145667	1.17761452031115	0.574087078651685	1.33336353751359	0.00275945618522009	0.062903033765905	0	cagcctctcctgcagctgcgCggcgctcacctcgctctggc	11	19	3	0	rs144262744	byfrequency	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	GAS6-650	NM_000820	exon14	c.G1804A	p.A602T	GCTGCGCGGCGCT	.	80	72	0	0	C|0.999;T|0.001	23	3	19	0	1	T	114525009	C	T	114525009	3	4	32	1	0	0	0	0	1	0	0	0	6269	768	27	1	240	1	GAS6	13	114525009	Missense_Mutation	SNP	C	TCGA-OR-A5KO-01A-11D-A29I-10	26194499	114525009	644869	102	7921										
ZNF219	51222	hgsc.bcm.edu	37	chr14	21560706	21560706	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0684931506849315	10	0.929330005145667	1.17761452031115	0.574087078651685	1.33336353751359	0.00275945618522009	0.062903033765905	0	gttgcctcacgttcgggctcCggctccggctccggctgggg	16	15	1	0	rs1065496	byfrequency	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	ZNF219-90	NM_001102454	exon3	c.G750C	p.P250P	GGGCTCCGGCTCC	.	37	21	1	0	C|0.100;G|0.900	79	32	46	1	0	G	21560706	C	G	21560706	2	3	32	1	0	0	0	0	0	0	0	1	17810	639	23	2		2	ZNF219	14	21560706	Silent	SNP	C	TCGA-OR-A5KO-01A-11D-A29I-10		21560706	85788834	103	7922										
FAM161B	145483	bcgsc.ca	37	chr14	74402693	74402693	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0684931506849315	10	0.929330005145667	1.17761452031115	0.574087078651685	1.33336353751359	0.00275945618522009	0.062903033765905	0	gtctctttctcttgaacagcCcgggtgccttgacccttgtt	9	13	2	2	rs17182699	byfrequency	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	FAM161B-91	NM_152445	exon8	c.G1953A	p.R651R	AACAGCCCGGGTG	.	183	6	97	0	C|0.935;T|0.065	7	7	0	0	0	T	74402693	C	T	74402693	2	4	32	1	0	0	0	0	0	0	0	1	5489	610	22	3		3	FAM161B	14	74402693	Silent	SNP	C	TCGA-OR-A5KO-01A-11D-A29I-10	52841987	74402693	32946847	104	7923										
PAPOLA	10914	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	96987355	96987355	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0684931506849315	10	0.929330005145667	1.17761452031115	0.574087078651685	1.33336353751359	0.00275945618522009	0.062903033765905	0	atcaacaggattttaattttGggaaaactaaataacctggt	7	5	1	0	novel		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	PAPOLA-68	NM_001252006	exon3	c.G195T	p.L65F	AATTTTGGGAAAA	.	181	81	156	1	.	167	79	88	0	0	T	96987355	G	T	96987355	3	4	32	1	0	0	0	0	1	0	0	0	11458	1339	47	3	205	3	PAPOLA	14	96987355	Missense_Mutation	SNP	G	TCGA-OR-A5KO-01A-11D-A29I-10	22584662	96987355	10362185	105	7924										
AHNAK2	113146	bcgsc.ca	37	chr14	105410183	105410183	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0684931506849315	10	0.929330005145667	1.17761452031115	0.574087078651685	1.33336353751359	0.00275945618522009	0.062903033765905	0	gtggccctccaggagtttcaTgtccacctggcgagcttgga	13	12	1	0	rs10438246	byfrequency	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	AHNAK2-47	NM_138420	exon7	c.A11605G	p.M3869V	GTTTCATGTCCAC	.	423	10	209	1	T|0.456;C|0.544	0	0	0	0	0	C	105410183	T	C	105410183	3	2	32	1	0	0	0	0	1	0	0	0	415	1464	51	4	5786	4	AHNAK2	14	105410183	Missense_Mutation	SNP	T	TCGA-OR-A5KO-01A-11D-A29I-10	8422828	105410183	1939357	106	7925										
ZNF774	342132	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	90904066	90904066	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0684931506849315	10	0.929330005145667	1.17761452031115	0.574087078651685	1.33336353751359	0.00275945618522009	0.062903033765905	0	tcagagatagttctcattttGtagctcacatgagcactcat	7	9	4	2	novel		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	ZNF774-90	NM_001004309	exon4	c.G1003C	p.V335L	CATTTTGTAGCTC	.	40	4	59	0	.	0	0	0	0	0	C	90904066	G	C	90904066	3	2	32	1	0	0	0	0	1	0	0	0	18184	1377	48	3	1013	3	ZNF774	15	90904066	Missense_Mutation	SNP	G	TCGA-OR-A5KO-01A-11D-A29I-10		90904066	11627326	107	7926										
CACNA1H	8912	hgsc.bcm.edu	37	chr16	1252124	1252124	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0684931506849315	10	0.929330005145667	1.17761452031115	0.574087078651685	1.33336353751359	0.00275945618522009	0.062903033765905	0	cgagctggcgcgcccccctcGccaccttccccaggccgcgg	12	22	0	0	novel		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	CACNA1H-67	NM_021098	exon9	c.G1674A	p.S558S	CCCCTCGCCACCT	.	36	17	0	0	.	7	3	4	0	0	A	1252124	G	A	1252124	2	1	32	1	0	0	0	0	0	0	0	1	2551	1074	38	1		1	CACNA1H	16	1252124	Silent	SNP	G	TCGA-OR-A5KO-01A-11D-A29I-10		1252124	89102629	108	7927										
TPSAB1	7177	bcgsc.ca	37	chr16	1291622	1291622	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0684931506849315	10	0.929330005145667	1.17761452031115	0.574087078651685	1.33336353751359	0.00275945618522009	0.062903033765905	0	ccagccacgtccacacggtcAccctgccccctgcctcagag	8	21	2	1	rs1800992		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	TPSAB1-22	NM_003294	exon4	c.A421G	p.T141A	ACGGTCACCCTGC	.	662	204	91	8	G|1.000;|0.000	0	0	0	0	0	G	1291622	A	G	1291622	3	3	32	1	0	0	0	0	1	0	0	0	16461	159	6	4	431	4	TPSAB1	16	1291622	Missense_Mutation	SNP	A	TCGA-OR-A5KO-01A-11D-A29I-10	39498	1291622	89063131	109	7928										
MEFV	4210	hgsc.bcm.edu	37	chr16	3304463	3304463	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0684931506849315	10	0.929330005145667	1.17761452031115	0.574087078651685	1.33336353751359	0.00275945618522009	0.062903033765905	0	agctggcgtttctgcgcagcCggacctcggcctggcccccc	13	18	1	0	rs224222	byfrequency	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	MEFV-228	NM_000243	exon2	c.G605A	p.R202Q	CGCAGCCGGACCT	.	10	10	0	0	C|0.816;T|0.184	0	0	0	0	0	T	3304463	C	T	3304463	3	4	32	1	0	0	0	0	1	0	0	0	9487	652	23	1	1776	1	MEFV	16	3304463	Missense_Mutation	SNP	C	TCGA-OR-A5KO-01A-11D-A29I-10	2012841	3304463	87050290	110	7929										
MEFV	4210	hgsc.bcm.edu	37	chr16	3304573	3304573	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0684931506849315	10	0.929330005145667	1.17761452031115	0.574087078651685	1.33336353751359	0.00275945618522009	0.062903033765905	0	tgcgcgtccaggccctccgaGgccttctctctgcgtttgct	11	16	2	0	rs224223	byfrequency	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	MEFV-228	NM_000243	exon2	c.C495A	p.A165A	CTCCGAGGCCTTC	.	6	6	0	0	G|0.570;T|0.430	0	0	0	0	0	T	3304573	G	T	3304573	2	4	32	1	0	0	0	0	0	0	0	1	9487	987	35	3		3	MEFV	16	3304573	Silent	SNP	G	TCGA-OR-A5KO-01A-11D-A29I-10	110	3304573	87050180	111	7930										
SMG1	23049	hgsc.bcm.edu	37	chr16	18937330	18937330	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0684931506849315	10	0.929330005145667	1.17761452031115	0.574087078651685	1.33336353751359	0.00275945618522009	0.062903033765905	0	gccgccgccgccgccgccgcTgctcagccgagaccccgggg	15	21	1	1	rs190057031		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	SMG1-1160	NM_015092	exon1	c.A34G	p.S12G	CGCCGCTGCTCAG	.	47	23	1	0	T|0.974;C|0.026	7	1	6	0	0	C	18937330	T	C	18937330	3	2	32	1	0	0	0	0	1	0	0	0	14830	1580	55	4	11203	4	SMG1	16	18937330	Missense_Mutation	SNP	T	TCGA-OR-A5KO-01A-11D-A29I-10	15632757	18937330	71417423	112	7931										
PDILT	204474	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr16	20384188	20384188	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0684931506849315	10	0.929330005145667	1.17761452031115	0.574087078651685	1.33336353751359	0.00275945618522009	0.062903033765905	0	tgataccatatgactcggagCttttggagacaaacagcagc	10	9	0	3	rs193085306	alternate_allele	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	PDILT-153	NM_174924	exon7	c.G854T	p.S285I	TCGGAGCTTTTGG	.	173	78	88	0	C|0.999;T|0.000	0	0	0	0	0	A	20384188	C	A	20384188	3	1	32	1	0	0	0	0	1	0	0	0	11703	797	28	3	924	3	PDILT	16	20384188	Missense_Mutation	SNP	C	TCGA-OR-A5KO-01A-11D-A29I-10	1446858	20384188	69970565	113	7932										
SEZ6L2	26470	hgsc.bcm.edu	37	chr16	29908433	29908433	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0684931506849315	10	0.929330005145667	1.17761452031115	0.574087078651685	1.33336353751359	0.00275945618522009	0.062903033765905	0	gggtggctagcgtggggtccCgatcagatcctgggacagtg	18	9	1	1	rs11649499	byfrequency	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	SEZ6L2-92	NM_001243332	exon3	c.G221C	p.R74P	GGGTCCCGATCAG	.	11	11	0	0	C|0.218;G|0.782	0	0	0	0	0	G	29908433	C	G	29908433	3	3	32	1	0	0	0	0	1	0	0	0	14179	652	23	2	2614	2	SEZ6L2	16	29908433	Missense_Mutation	SNP	C	TCGA-OR-A5KO-01A-11D-A29I-10	9524245	29908433	60446320	114	7933										
FBXL19	54620	hgsc.bcm.edu	37	chr16	30937068	30937068	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0684931506849315	10	0.929330005145667	1.17761452031115	0.574087078651685	1.33336353751359	0.00275945618522009	0.062903033765905	0	acagccctcggcgttgctgaCgcccccaatgtcgtcgagca	11	16	0	1	novel		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	FBXL19-661	NM_001099784	exon2	c.C53T	p.T18M	TGCTGACGCCCCC	.	18	9	0	0	.	0	0	0	0	0	T	30937068	C	T	30937068	3	4	32	1	0	0	0	0	1	0	0	0	5734	536	19	1	59	1	FBXL19	16	30937068	Missense_Mutation	SNP	C	TCGA-OR-A5KO-01A-11D-A29I-10	1028635	30937068	59417685	115	7934										
ARMC5	79798	hgsc.bcm.edu	37	chr16	31476186	31476186	+	Silent	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.0684931506849315	10	0.929330005145667	1.17761452031115	0.574087078651685	1.33336353751359	0.00275945618522009	0.062903033765905	0	ccacgtgcccggcccactctCcacagccggcaccgagagct	10	20	1	1	rs55800131	byfrequency	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	ARMC5-24	NM_024742	exon4	c.C1842G	p.L614L	CACTCTCCACAGC	.	12	5	2	0	C|0.940;G|0.060	12	7	5	0	0	G	31476186	C	G	31476186	2	3	32	1	0	0	0	0	0	0	0	1	955	842	30	3		3	ARMC5	16	31476186	Silent	SNP	C	TCGA-OR-A5KO-01A-11D-A29I-10	539118	31476186	58878567	116	7935										
CCDC102A	92922	hgsc.bcm.edu	37	chr16	57562804	57562804	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0684931506849315	10	0.929330005145667	1.17761452031115	0.574087078651685	1.33336353751359	0.00275945618522009	0.062903033765905	0	ggcagtgcagtccgaccaccGgcgcatggtcttctccatct	11	15	3	0	rs12935069		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	CCDC102A-91	NM_033212	exon2	c.C286T	p.R96W	ACCACCGGCGCAT	.	4	4	0	0	G|0.001;A|0.999	0	0	0	0	0	A	57562804	G	A	57562804	3	1	32	1	0	0	0	0	1	0	0	0	2742	1115	39	1	1398	1	CCDC102A	16	57562804	Missense_Mutation	SNP	G	TCGA-OR-A5KO-01A-11D-A29I-10	26086618	57562804	32791949	117	7936										
EDC4	23644	broad.mit.edu	37	chr16	67913786	67913788	+	In_Frame_Del	DEL	AGC	AGC	-													0.0684931506849315	10	0.929330005145667	1.17761452031115	0.574087078651685	1.33336353751359	0.00275945618522009	0.062903033765905	0	ccagcagcagcagcagcggtAgcagcagcagcagcagcagt					novel		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	EDC4-92	NM_014329	exon16	c.1855_1857del	p.619_619del	AGCGGTAGCAGCA	.	110	6	56	0	.	0	0	0	0	0	-	67913788	AGC	-	67913786	7	5	32	1	0	1	0	1	0	0	0	0	4919	420	15	0	1917	0	EDC4	16	67913786	In_Frame_Del	DEL	AGC	TCGA-OR-A5KO-01A-11D-A29I-10	10350982	67913786	22440967	118	7937										
ADAMTS18	170692	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr16	77389876	77389876	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0684931506849315	10	0.929330005145667	1.17761452031115	0.574087078651685	1.33336353751359	0.00275945618522009	0.062903033765905	0	actggcggctgcaggaagacCatgaaaacactccattgttt	10	10	0	2	novel		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	ADAMTS18-1036	NM_199355	exon9	c.G1421T	p.W474L	GAAGACCATGAAA	.	172	88	114	0	.	0	0	0	0	0	A	77389876	C	A	77389876	3	1	32	1	0	0	0	0	1	0	0	0	263	595	21	3	2304	3	ADAMTS18	16	77389876	Missense_Mutation	SNP	C	TCGA-OR-A5KO-01A-11D-A29I-10	9476090	77389876	12964877	119	7938										
C16orf3	750	bcgsc.ca	37	chr16	90095573	90095573	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0684931506849315	10	0.929330005145667	1.17761452031115	0.574087078651685	1.33336353751359	0.00275945618522009	0.062903033765905	0	gcagcctacggggcaggctaCggggcagcttacggggcagg	19	11	0	0	rs77382359		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	C16orf3-90	NM_001214	exon1	c.G178A	p.V60I	AGGCTACGGGGCA	.	59	8	33	0	C|0.500;T|0.500	0	0	0	0	0	T	90095573	C	T	90095573	3	4	32	1	0	0	0	0	1	0	0	0	1816	536	19	1	179	1	C16orf3	16	90095573	Missense_Mutation	SNP	C	TCGA-OR-A5KO-01A-11D-A29I-10	12705697	90095573	259180	120	7939										
TP53	7157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	7574012	7574012	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0684931506849315	10	0.929330005145667	1.17761452031115	0.574087078651685	1.33336353751359	0.00275945618522009	0.062903033765905	0	attcagctctcggaacatctCgaagcgctcacgcccacgga	9	15	4	0	rs17882252	byfrequency;alternate_allele	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	TP53-70225	NM_000546	exon10	c.G1015T	p.E339X	ACATCTCGAAGCG	.	105	89	136	0	C|0.994;T|0.006	3	0	3	0	0	A	7574012	C	A	7574012	4	1	32	1	0	0	0	0	0	1	0	0	16419	893	31	2	174	2	TP53	17	7574012	Nonsense_Mutation	SNP	C	TCGA-OR-A5KO-01A-11D-A29I-10		7574012	73621198	121	7940										
NOS2	4843	bcgsc.ca	37	chr17	26089867	26089867	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0684931506849315	10	0.929330005145667	1.17761452031115	0.574087078651685	1.33336353751359	0.00275945618522009	0.062903033765905	0	gccacagtcaggtggatctcTgtgggcgtgtgatcccggga	16	10	2	1	rs1060826	byfrequency	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	NOS2-156	NM_000625	exon22	c.A2757G	p.T919T	GATCTCTGTGGGC	.	77	5	69	0	T|0.303;C|0.697	0	0	0	0	0	C	26089867	T	C	26089867	2	2	32	1	0	0	0	0	0	0	0	1	10572	1567	55	4		4	NOS2	17	26089867	Silent	SNP	T	TCGA-OR-A5KO-01A-11D-A29I-10	18515855	26089867	55105343	122	7941										
C17orf66	256957	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr17	34190106	34190106	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0684931506849315	10	0.929330005145667	1.17761452031115	0.574087078651685	1.33336353751359	0.00275945618522009	0.062903033765905	0	cagctgtttgatgagagcccGgatcacatgcttattcaggc	11	10	2	2	rs142219051	alternate_allele	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	C17orf66-155	NM_152781	exon8	c.C649A	p.R217R	GAGCCCGGATCAC	.	44	4	42	0	G|1.000;A|0.000	0	0	0	0	0	T	34190106	G	T	34190106	2	4	32	1	0	0	0	0	0	0	0	1	1879	1115	39	2		2	C17orf66	17	34190106	Silent	SNP	G	TCGA-OR-A5KO-01A-11D-A29I-10	8100239	34190106	47005104	123	7942										
ASPSCR1	79058	hgsc.bcm.edu	37	chr17	79974915	79974916	+	Frame_Shift_Del	DEL	CT	CT	-													0.0684931506849315	10	0.929330005145667	1.17761452031115	0.574087078651685	1.33336353751359	0.00275945618522009	0.062903033765905	0	ggagggggcgctggtcccccCtgagcccatcccagggacgg					novel		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	CT	CT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	ASPSCR1-877	NM_001251888	exon16	c.1856_1857del	p.619_619del	TCCCCCCTGAGCC	.	44	39	7	3	.	0	0	0	0	0	-	79974916	CT	-	79974915	7	5	32	1	0	1	0	1	0	0	0	0	1060	681	24	0	1632	0	ASPSCR1	17	79974915	Frame_Shift_Del	DEL	CT	TCGA-OR-A5KO-01A-11D-A29I-10	45784809	79974915	1220295	124	7943										
MYL12B	103910	broad.mit.edu;bcgsc.ca	37	chr18	3277813	3277813	+	Silent	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0684931506849315	10	0.929330005145667	1.17761452031115	0.574087078651685	1.33336353751359	0.00275945618522009	0.062903033765905	0	tgctgacaaccatgggggatCggtttacagatgaggaagtg	15	6	0	3	novel		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	MYL12B-90	NM_033546	exon4	c.C397A	p.R133R	GGGGATCGGTTTA	.	236	11	223	1	.	1467	1461	6	0	0	A	3277813	C	A	3277813	2	1	32	1	0	0	0	0	0	0	0	1	10074	875	31	2		2	MYL12B	18	3277813	Silent	SNP	C	TCGA-OR-A5KO-01A-11D-A29I-10		3277813	74799435	125	7944										
CHST9	83539	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr18	24497051	24497051	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0684931506849315	10	0.929330005145667	1.17761452031115	0.574087078651685	1.33336353751359	0.00275945618522009	0.062903033765905	0	tgggtctcctcagttttcttCcatttattatctttgactaa	5	9	4	1	novel		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	CHST9-93	NM_031422	exon6	c.G504T	p.W168C	TTTCTTCCATTTA	.	53	45	85	0	.	0	0	0	0	0	A	24497051	C	A	24497051	3	1	32	1	0	0	0	0	1	0	0	0	3417	856	30	3	831	3	CHST9	18	24497051	Missense_Mutation	SNP	C	TCGA-OR-A5KO-01A-11D-A29I-10	21219238	24497051	53580197	126	7945										
ABCA7	10347	hgsc.bcm.edu	37	chr19	1065044	1065044	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0684931506849315	10	0.929330005145667	1.17761452031115	0.574087078651685	1.33336353751359	0.00275945618522009	0.062903033765905	0	ctgcgcgaggcacatggaggCcgcctgcgcttccagctgcc	14	16	0	0	rs4147935	byfrequency	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	ABCA7-98	NM_019112	exon46	c.C6159T	p.G2053G	TGGAGGCCGCCTG	.	8	8	0	0	C|0.766;T|0.234	5	0	5	0	0	T	1065044	C	T	1065044	2	4	32	1	0	0	0	0	0	0	0	1	37	726	26	3		3	ABCA7	19	1065044	Silent	SNP	C	TCGA-OR-A5KO-01A-11D-A29I-10		1065044	58063939	127	7946										
ZNF77	58492	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	2934196	2934196	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.0684931506849315	10	0.929330005145667	1.17761452031115	0.574087078651685	1.33336353751359	0.00275945618522009	0.062903033765905	0	tcctcacgtgatctctaaagGaggagtaacagctgaatgat	10	8	2	3	novel		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	ZNF77-91	NM_021217	exon4	c.C929G	p.S310C	CTAAAGGAGGAGT	.	275	115	145	0	.	7	2	5	0	0	C	2934196	G	C	2934196	3	2	32	1	0	0	0	0	1	0	0	0	18179	1174	41	3	712	3	ZNF77	19	2934196	Missense_Mutation	SNP	G	TCGA-OR-A5KO-01A-11D-A29I-10	1869152	2934196	56194787	128	7947										
ANKRD24	170961	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	4216002	4216002	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0684931506849315	10	0.929330005145667	1.17761452031115	0.574087078651685	1.33336353751359	0.00275945618522009	0.062903033765905	0	gggagaatactagctatgacGtaaccaccctgcaggatgag	12	9	0	3	novel		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	ANKRD24-68	NM_133475	exon16	c.G1225A	p.V409I	TATGACGTAACCA	.	119	54	49	0	.	5	5	0	0	0	A	4216002	G	A	4216002	3	1	32	1	0	0	0	0	1	0	0	0	653	1145	40	1	1283	1	ANKRD24	19	4216002	Missense_Mutation	SNP	G	TCGA-OR-A5KO-01A-11D-A29I-10	1281806	4216002	54912981	129	7948										
ICAM3	3385	bcgsc.ca	37	chr19	10450285	10450285	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0684931506849315	10	0.929330005145667	1.17761452031115	0.574087078651685	1.33336353751359	0.00275945618522009	0.062903033765905	0	aacacggatggtaccatggtGgccattctgacagaggaagg	14	8	1	2	rs281414	byfrequency	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	ICAM3-131	NM_002162	exon1	c.C6T	p.A2A	CATGGTGGCCATT	.	80	6	33	0	G|0.827;A|0.173	3	3	0	0	0	A	10450285	G	A	10450285	2	1	32	1	0	0	0	0	0	0	0	1	7502	1335	47	3		3	ICAM3	19	10450285	Silent	SNP	G	TCGA-OR-A5KO-01A-11D-A29I-10	6234283	10450285	48678698	130	7949										
LPHN1	22859	broad.mit.edu	37	chr19	14272185	14272186	+	Frame_Shift_Ins	INS	-	-	C													0.0684931506849315	10	0.929330005145667	1.17761452031115	0.574087078651685	1.33336353751359	0.00275945618522009	0.062903033765905	0	gctgggtggccggccactggINSacccgccgtacctctcgggg					novel		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	LPHN1-523	NM_001008701	exon7	c.1464_1465insG	p.V488fs	CCACTGGACCCGC	.	112	6	7	0	.	0	0	0	0	0	C	14272186	-	C	14272185	7	5	32	1	0	1	1	0	0	0	0	0	8942	1161	41	0	3032	0	LPHN1	19	14272185	Frame_Shift_Ins	INS	-	TCGA-OR-A5KO-01A-11D-A29I-10	3821900	14272185	44856798	131	7950										
OCEL1	79629	hgsc.bcm.edu	37	chr19	17337555	17337555	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0684931506849315	10	0.929330005145667	1.17761452031115	0.574087078651685	1.33336353751359	0.00275945618522009	0.062903033765905	0	cacgacgccccccgcaggacCcgcccatcagcccggaaacc	9	22	1	0	rs3745163	byfrequency	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	OCEL1-68	NM_024578	exon2	c.C123A	p.T41T	CAGGACCCGCCCA	.	5	4	0	0	C|0.734;A|0.266	15	3	12	0	0	A	17337555	C	A	17337555	2	1	32	1	0	0	0	0	0	0	0	1	10845	610	22	3		3	OCEL1	19	17337555	Silent	SNP	C	TCGA-OR-A5KO-01A-11D-A29I-10	3065370	17337555	41791428	132	7951										
ZNF546	339327	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	40520223	40520223	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0684931506849315	10	0.929330005145667	1.17761452031115	0.574087078651685	1.33336353751359	0.00275945618522009	0.062903033765905	0	tcaactaactgaacatcaaaGaattcatactggtgagaggc	8	8	3	3	novel		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	ZNF546-155	NM_178544	exon7	c.G1046T	p.R349I	ATCAAAGAATTCA	.	160	78	75	0	.	0	0	0	0	0	T	40520223	G	T	40520223	3	4	32	1	0	0	0	0	1	0	0	0	18015	942	33	3	1064	3	ZNF546	19	40520223	Missense_Mutation	SNP	G	TCGA-OR-A5KO-01A-11D-A29I-10	23182668	40520223	18608760	133	7952										
POU2F2	5452	broad.mit.edu	37	chr19	42596242	42596243	+	Frame_Shift_Ins	INS	-	-	A													0.0684931506849315	10	0.929330005145667	1.17761452031115	0.574087078651685	1.33336353751359	0.00275945618522009	0.062903033765905	0	cgtgctggggttcaggcctgINSacaagccgatagccgagtgg					novel		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	POU2F2-227	NM_001207025	exon13	c.1379_1380insT	p.S460fs	AGGCCTGACAAGC	.	126	6	41	0	.	0	0	0	0	0	A	42596243	-	A	42596242	7	5	32	1	0	1	1	0	0	0	0	0	12301	1294	45	0	68	0	POU2F2	19	42596242	Frame_Shift_Ins	INS	-	TCGA-OR-A5KO-01A-11D-A29I-10	2076019	42596242	16532741	134	7953										
LILRA6	79168	bcgsc.ca	37	chr19	54746589	54746589	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0684931506849315	10	0.929330005145667	1.17761452031115	0.574087078651685	1.33336353751359	0.00275945618522009	0.062903033765905	0	aggcagagcagggctgtgagGgcgggcgtcatggcgtctcc	19	10	2	2	rs199943671	byfrequency	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	LILRA6-24	NM_024318	exon1	c.C12T	p.A4A	TGTGAGGGCGGGC	.	487	13	206	2	G|0.995;A|0.005	0	0	0	0	0	A	54746589	G	A	54746589	2	1	32	1	0	0	0	0	0	0	0	1	8812	1219	43	3		3	LILRA6	19	54746589	Silent	SNP	G	TCGA-OR-A5KO-01A-11D-A29I-10	12150347	54746589	4382394	135	7954										
GP6	51206	hgsc.bcm.edu	37	chr19	55525497	55525497	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0684931506849315	10	0.929330005145667	1.17761452031115	0.574087078651685	1.33336353751359	0.00275945618522009	0.062903033765905	0	ccctgtattttttgagacaaAgtcaggcttcgtcacccgag	9	11	2	1	rs1671150	byfrequency	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	GP6-92	NM_001083899	exon8	c.T1816C	p.F606L	AGACAAAGTCAGG	.	4	4	0	0	A|0.233;G|0.767	0	0	0	0	0	G	55525497	A	G	55525497	3	3	32	1	0	0	0	0	1	0	0	0	6604	72	3	4	50	4	GP6	19	55525497	Missense_Mutation	SNP	A	TCGA-OR-A5KO-01A-11D-A29I-10	778908	55525497	3603486	136	7955										
MKKS	8195	bcgsc.ca	37	chr20	10386013	10386013	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0684931506849315	10	0.929330005145667	1.17761452031115	0.574087078651685	1.33336353751359	0.00275945618522009	0.062903033765905	0	aggtcaggttgctggctgagCccacagcttcatgtggaagg	15	9	2	1	rs1545	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	MKKS-90	NM_170784	exon6	c.G1595T	p.G532V	GCTGAGCCCACAG	.	169	8	194	0	C|0.839;A|0.161	22	22	0	0	0	A	10386013	C	A	10386013	3	1	32	1	0	0	0	0	1	0	0	0	9628	739	26	3	121	3	MKKS	20	10386013	Missense_Mutation	SNP	C	TCGA-OR-A5KO-01A-11D-A29I-10		10386013	52639507	137	7956										
MKKS	8195	bcgsc.ca	37	chr20	10386059	10386059	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0684931506849315	10	0.929330005145667	1.17761452031115	0.574087078651685	1.33336353751359	0.00275945618522009	0.062903033765905	0	ttgtggcacaaatggacgacGtgtgcttcttaagaaagacc	11	8	1	2	rs1547	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	MKKS-90	NM_170784	exon6	c.C1549T	p.R517C	GACGACGTGTGCT	.	135	7	128	1	G|0.836;A|0.164	24	24	0	0	0	A	10386059	G	A	10386059	3	1	32	1	0	0	0	0	1	0	0	0	9628	1145	40	1	167	1	MKKS	20	10386059	Missense_Mutation	SNP	G	TCGA-OR-A5KO-01A-11D-A29I-10	46	10386059	52639461	138	7957										
SSTR4	6754	bcgsc.ca	37	chr20	23016970	23016970	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0684931506849315	10	0.929330005145667	1.17761452031115	0.574087078651685	1.33336353751359	0.00275945618522009	0.062903033765905	0	tggtgcagctgctgaacctcTtcgtgaccagccttgatgcc	11	13	1	3	rs3746726	byfrequency	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	SSTR4-522	NM_001052	exon1	c.T850G	p.F284V	AACCTCTTCGTGA	.	133	6	132	0	T|0.674;G|0.326	0	0	0	0	0	G	23016970	T	G	23016970	3	3	32	1	0	0	0	0	1	0	0	0	15237	1609	56	5	852	5	SSTR4	20	23016970	Missense_Mutation	SNP	T	TCGA-OR-A5KO-01A-11D-A29I-10	12630911	23016970	40008550	139	7958										
ACTR5	79913	hgsc.bcm.edu	37	chr20	37377139	37377139	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0684931506849315	10	0.929330005145667	1.17761452031115	0.574087078651685	1.33336353751359	0.00275945618522009	0.062903033765905	0	aagatggcggcgaacgtgttCccgttccgcgacgcccgtgc	14	14	0	1	rs2254105	byfrequency	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	ACTR5-90	NM_024855	exon1	c.C18T	p.F6F	CGTGTTCCCGTTC	.	6	6	0	0	C|0.769;T|0.231	0	0	0	0	0	T	37377139	C	T	37377139	2	4	32	1	0	0	0	0	0	0	0	1	215	854	30	3		3	ACTR5	20	37377139	Silent	SNP	C	TCGA-OR-A5KO-01A-11D-A29I-10	14360169	37377139	25648381	140	7959										
SLC9A8	23315	hgsc.bcm.edu	37	chr20	48429485	48429485	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0684931506849315	10	0.929330005145667	1.17761452031115	0.574087078651685	1.33336353751359	0.00275945618522009	0.062903033765905	0	ggagaagatggcggaagaggAgtgagtgggctttttcccgg	19	5	0	4	rs61734269		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	SLC9A8-91	NM_001260491	exon1	c.A26C	p.E9A	AAGAGGAGTGAGT	.	7	5	2	0	A|0.994;C|0.006	0	0	0	0	0	C	48429485	A	C	48429485	3	2	32	1	0	0	0	0	1	0	0	0	14755	318	11	5	28	5	SLC9A8	20	48429485	Missense_Mutation	SNP	A	TCGA-OR-A5KO-01A-11D-A29I-10	11052346	48429485	14596035	141	7960										
CECR2	27443	bcgsc.ca	37	chr22	18003341	18003341	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0684931506849315	10	0.929330005145667	1.17761452031115	0.574087078651685	1.33336353751359	0.00275945618522009	0.062903033765905	0	tggagaggtgcatgtctgtcGaccagccgtcctgtagccag	14	11	1	1	rs73159550	byfrequency	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	CECR2-70	.	.	.	.	TCTGTCGACCAGC	.	284	8	238	0	G|0.974;A|0.026	0	0	0	0	0	A	18003341	G	A	18003341	2	1	32	1	0	0	0	0	0	0	0	1	3212	1045	37	1		1	CECR2	22	18003341	Silent	SNP	G	TCGA-OR-A5KO-01A-11D-A29I-10		18003341	33301225	142	7961										
ZDHHC8	29801	hgsc.bcm.edu	37	chr22	20131121	20131121	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0684931506849315	10	0.929330005145667	1.17761452031115	0.574087078651685	1.33336353751359	0.00275945618522009	0.062903033765905	0	caggccagcagcaacgccccGgggccccggcccagcagtgg	15	18	0	0	rs145100111	byfrequency	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	ZDHHC8-91	NM_001185024	exon10	c.G1968C	p.P656P	CGCCCCGGGGCCC	.	22	22	1	0	G|0.993;C|0.007	0	0	0	0	0	C	20131121	G	C	20131121	2	2	32	1	0	0	0	0	0	0	0	1	17658	1103	39	2		2	ZDHHC8	22	20131121	Silent	SNP	G	TCGA-OR-A5KO-01A-11D-A29I-10	2127780	20131121	31173445	143	7962										
AIFM3	150209	bcgsc.ca	37	chr22	21327589	21327589	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0684931506849315	10	0.929330005145667	1.17761452031115	0.574087078651685	1.33336353751359	0.00275945618522009	0.062903033765905	0	gggctcaaggcgctgccttgCccacagtggagctcaagatc	13	13	2	1	rs178264	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	AIFM3-280	NM_001146288	exon3	c.C43T	p.P15S	GCCTTGCCCACAG	.	151	6	53	0	C|0.759;T|0.241	0	0	0	0	0	T	21327589	C	T	21327589	3	4	32	1	0	0	0	0	1	0	0	0	428	739	26	3	49	3	AIFM3	22	21327589	Missense_Mutation	SNP	C	TCGA-OR-A5KO-01A-11D-A29I-10	1196468	21327589	29976977	144	7963										
SHANK3	85358	hgsc.bcm.edu	37	chr22	51159595	51159595	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0684931506849315	10	0.929330005145667	1.17761452031115	0.574087078651685	1.33336353751359	0.00275945618522009	0.062903033765905	0	gctcacccctggcccttgccCtggctgcccgagagcgagct	12	18	1	1	novel		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	SHANK3-69	NM_033517	exon21	c.C3292T	p.L1098L	CTTGCCCTGGCTG	.	15	15	0	0	.	7	2	5	0	0	T	51159595	C	T	51159595	2	4	32	1	0	0	0	0	0	0	0	1	14301	680	24	3		3	SHANK3	22	51159595	Silent	SNP	C	TCGA-OR-A5KO-01A-11D-A29I-10	29832006	51159595	144971	145	7964										
ARSE	415	bcgsc.ca	37	chrX	2856155	2856155	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0684931506849315	10	0.929330005145667	1.17761452031115	0.574087078651685	1.33336353751359	0.00275945618522009	0.062903033765905	0	cctgtcctggggcacctcgcCgcccgccagccggaccacgg	13	20	0	0	rs35143646	byfrequency	TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	ARSE-131	NM_000047	exon9	c.G1270A	p.G424S	CCTCGCCGCCCGC	.	404	10	149	1	C|0.503;T|0.497	0	0	0	0	0	T	2856155	C	T	2856155	3	4	32	1	0	0	0	0	1	0	0	0	991	652	23	1	511	1	ARSE	23	2856155	Missense_Mutation	SNP	C	TCGA-OR-A5KO-01A-11D-A29I-10		2856155	152414405	146	7965										
SMC1A	8243	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	53430781	53430781	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0684931506849315	10	0.929330005145667	1.17761452031115	0.574087078651685	1.33336353751359	0.00275945618522009	0.062903033765905	0	atcctcttgatatcattaatGcgaggcccaaagttggctag	9	9	2	1	novel		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	SMC1A-232	NM_006306	exon14	c.C2241G	p.R747R	ATTAATGCGAGGC	.	150	62	110	0	.	45	19	25	1	0	C	53430781	G	C	53430781	2	2	32	1	0	0	0	0	0	0	0	1	14816	1306	46	3		3	SMC1A	23	53430781	Silent	SNP	G	TCGA-OR-A5KO-01A-11D-A29I-10	50574626	53430781	101839779	147	7966										
BEX2	84707	ucsc.edu;bcgsc.ca	37	chrX	102564587	102564587	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0684931506849315	10	0.929330005145667	1.17761452031115	0.574087078651685	1.33336353751359	0.00275945618522009	0.062903033765905	0	gtgctgactgcccgcaaactAtgactcaactgcttttccct	7	14	1	2	novel		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	BEX2-109	NM_001168399	exon3	c.T414C	p.H138H	CAAACTATGACTC	.	552	256	264	3	.	0	0	0	0	0	G	102564587	A	G	102564587	2	3	32	1	0	0	0	0	0	0	0	1	1412	446	16	4		4	BEX2	23	102564587	Silent	SNP	A	TCGA-OR-A5KO-01A-11D-A29I-10	49133806	102564587	52705973	148	7967										
CT47B1	643311	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	120009056	120009056	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0684931506849315	10	0.929330005145667	1.17761452031115	0.574087078651685	1.33336353751359	0.00275945618522009	0.062903033765905	0	ccagaggttgggcacagcagCgtggggccccaccatcaggc	15	14	1	1	novel		TCGA-OR-A5KO-01A-11D-A29I-10	TCGA-OR-A5KO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	efc0de29-4b55-469d-90c4-1f45dd50639f	e0418b18-0033-4ac2-abc0-bc7c73abab6f	.	.	NM_001145718	exon1	c.G469A	p.A157T	CAGCAGCGTGGGG	.	622	255	116	0	.	0	0	0	0	0	T	120009056	C	T	120009056	3	4	32	1	0	0	0	0	1	0	0	0	3995	768	27	1	438	1	CT47B1	23	120009056	Missense_Mutation	SNP	C	TCGA-OR-A5KO-01A-11D-A29I-10	17444469	120009056	35261504	149	7968										
HES3	390992	hgsc.bcm.edu	37	chr1	6305292	6305292	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0408163265306122	6	1	0.955010859447719	1.5007313505607	0.808086111840378	0.592074592074592	1	0	gcctgcgctgccccctggtgCccgagagcgccgccggcagc	15	19	0	1	rs61760836		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	HES3-514	NM_001024598	exon4	c.C286A	p.P96T	CTGGTGCCCGAGA	.	6	6	0	0	C|0.430;A|0.570	0	0	0	0	0	A	6305292	C	A	6305292	3	1	33	1	0	0	0	0	1	0	0	0	7088	739	26	3	296	3	HES3	1	6305292	Missense_Mutation	SNP	C	TCGA-OR-A5KP-01A-11D-A30A-10		6305292	242945329	1	7969			1	37		2	2	12	C		5.223288e-05
HES3	390992	hgsc.bcm.edu	37	chr1	6305303	6305303	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0408163265306122	6	1	0.955010859447719	1.5007313505607	0.808086111840378	0.592074592074592	1	0	cccctggtgcccgagagcgcCgccggcagcaccatggacag	14	17	0	1	rs61760837		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	HES3-514	NM_001024598	exon4	c.C297A	p.A99A	GAGCGCCGCCGGC	.	6	6	0	0	C|0.438;A|0.562	0	0	0	0	0	A	6305303	C	A	6305303	2	1	33	1	0	0	0	0	0	0	0	1	7088	639	23	2		2	HES3	1	6305303	Silent	SNP	C	TCGA-OR-A5KP-01A-11D-A30A-10	11	6305303	242945318	2	7970			1	37		2	2	12	C		5.223288e-05
FBXO42	54455	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	16580181	16580181	+	Frame_Shift_Del	DEL	G	G	-													0.0408163265306122	6	1	0.955010859447719	1.5007313505607	0.808086111840378	0.592074592074592	1	0	gggccagagatgttcggcttGgaccacgcccactgctcaag					novel		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	FBXO42-228	NM_018994	exon7	c.813delC	p.S271fs	CGGCTTGGACCAC	.	80	21	56	0	.	0	0	0	0	0	-	16580181	G	-	16580181	7	5	33	1	0	1	0	1	0	0	0	0	5770	1335	47	0	1356	0	FBXO42	1	16580181	Frame_Shift_Del	DEL	G	TCGA-OR-A5KP-01A-11D-A30A-10	10274878	16580181	232670440	3	7971										
BRDT	676	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	92446707	92446707	+	Nonsense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0408163265306122	6	1	0.955010859447719	1.5007313505607	0.808086111840378	0.592074592074592	1	0	gaaaaatatgtttcggcatgTctaagaaagagaccattaaa	8	5	1	2	novel		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	BRDT-374	NM_001242806	exon10	c.T1734A	p.C578X	GGCATGTCTAAGA	.	57	15	62	0	.	0	0	0	0	0	A	92446707	T	A	92446707	4	1	33	1	0	0	0	0	0	1	0	0	1511	1673	58	5	1756	5	BRDT	1	92446707	Nonsense_Mutation	SNP	T	TCGA-OR-A5KP-01A-11D-A30A-10	75866526	92446707	156803914	4	7972										
SLC35A3	23443	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	100483292	100483292	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0408163265306122	6	1	0.955010859447719	1.5007313505607	0.808086111840378	0.592074592074592	1	0	agtatgcagataatattttaAaaggatttgcaacctcttta	6	5	1	1	novel		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	SLC35A3-90	NM_001271685	exon7	c.A934G	p.K312E	ATTTTAAAAGGAT	.	127	36	143	1	.	0	0	0	0	0	G	100483292	A	G	100483292	3	3	33	1	0	0	0	0	1	0	0	0	14607	15	1	4	830	4	SLC35A3	1	100483292	Missense_Mutation	SNP	A	TCGA-OR-A5KP-01A-11D-A30A-10	8036585	100483292	148767329	5	7973										
PRPF38B	55119	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	109235422	109235425	+	Frame_Shift_Del	DEL	CTTA	CTTA	-													0.0408163265306122	6	1	0.955010859447719	1.5007313505607	0.808086111840378	0.592074592074592	1	0	gaccaacatcctgtcgtcgcCttacttcaaagtacagctct					novel		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	CTTA	CTTA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	PRPF38B-90	NM_018061	exon1	c.209_212del	p.70_71del	CGTCGCCTTACTT	.	379	130	206	0	.	0	0	0	0	0	-	109235425	CTTA	-	109235422	7	5	33	1	0	1	0	1	0	0	0	0	12600	681	24	0	211	0	PRPF38B	1	109235422	Frame_Shift_Del	DEL	CTTA	TCGA-OR-A5KP-01A-11D-A30A-10	8752130	109235422	140015199	6	7974										
RSBN1	54665	hgsc.bcm.edu	37	chr1	114354654	114354654	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0408163265306122	6	1	0.955010859447719	1.5007313505607	0.808086111840378	0.592074592074592	1	0	acagttggggctgcattcgtTggcggcagcggcccaggatg	17	10	0	0	rs3195954	byfrequency	TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	RSBN1-91	NM_018364	exon1	c.A381G	p.P127P	ATTCGTTGGCGGC	.	32	16	0	0	T|0.861;C|0.139	0	0	0	0	0	C	114354654	T	C	114354654	2	2	33	1	0	0	0	0	0	0	0	1	13731	1799	63	4		4	RSBN1	1	114354654	Silent	SNP	T	TCGA-OR-A5KP-01A-11D-A30A-10	5119232	114354654	134895967	7	7975										
CA14	23632	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	150232559	150232559	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0408163265306122	6	1	0.955010859447719	1.5007313505607	0.808086111840378	0.592074592074592	1	0	cttgcaggtcaacactggacGtatgagggtgagcagatctc	13	9	2	3	novel		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	CA14-91	NM_012113	exon2	c.G69T	p.T23T	CTGGACGTATGAG	.	220	39	192	0	.	0	0	0	0	0	T	150232559	G	T	150232559	2	4	33	1	0	0	0	0	0	0	0	1	2521	1132	40	2		2	CA14	1	150232559	Silent	SNP	G	TCGA-OR-A5KP-01A-11D-A30A-10	35877905	150232559	99018062	8	7976										
SCAMP3	10067	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	155227427	155227429	+	In_Frame_Del	DEL	AGG	AGG	-													0.0408163265306122	6	1	0.955010859447719	1.5007313505607	0.808086111840378	0.592074592074592	1	0	ccaggcaggcgaggaagttcAggagaagagccagcgtgctg					novel		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	AGG	AGG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	SCAMP3-93	NM_005698	exon6	c.537_539del	p.179_180del	AAGTTCAGGAGAA	.	224	34	241	0	.	0	0	0	0	0	-	155227429	AGG	-	155227427	7	5	33	1	0	1	0	1	0	0	0	0	13907	188	7	0	520	0	SCAMP3	1	155227427	In_Frame_Del	DEL	AGG	TCGA-OR-A5KP-01A-11D-A30A-10	4994868	155227427	94023194	9	7977										
C1orf106	55765	hgsc.bcm.edu	37	chr1	200880978	200880978	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0408163265306122	6	1	0.955010859447719	1.5007313505607	0.808086111840378	0.592074592074592	1	0	cgcctggcgagtgggagctgCgccgcgcagccccgggccct	17	17	0	0	rs296520	byfrequency	TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	C1orf106-93	NM_018265	exon9	c.C1654T	p.R552C	GAGCTGCGCCGCG	.	26	26	1	0	C|0.242;T|0.758	0	0	0	0	0	T	200880978	C	T	200880978	3	4	33	1	0	0	0	0	1	0	0	0	1986	768	27	1	1646	1	C1orf106	1	200880978	Missense_Mutation	SNP	C	TCGA-OR-A5KP-01A-11D-A30A-10	45653551	200880978	48369643	10	7978										
TNNT2	7139	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	201338962	201338962	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0408163265306122	6	1	0.955010859447719	1.5007313505607	0.808086111840378	0.592074592074592	1	0	accgtcttcgtcctctctccAgtcctcctcttctgaggttc	6	17	4	1	novel		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	TNNT2-90	NM_001276345	exon5	c.T79A	p.W27R	CTCTCCAGTCCTC	.	170	24	111	1	.	0	0	0	0	0	T	201338962	A	T	201338962	3	4	33	1	0	0	0	0	1	0	0	0	16368	188	7	5	886	5	TNNT2	1	201338962	Missense_Mutation	SNP	A	TCGA-OR-A5KP-01A-11D-A30A-10	457984	201338962	47911659	11	7979										
EPHX1	2052	broad.mit.edu;bcgsc.ca	37	chr1	226032262	226032264	+	In_Frame_Del	DEL	CTC	CTC	-													0.0408163265306122	6	1	0.955010859447719	1.5007313505607	0.808086111840378	0.592074592074592	1	0	tggacaacaggcaccatcatCtcctcccagcgcttctacaa					novel		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	EPHX1-281	NM_001136018	exon8	c.1104_1106del	p.368_369del	CATCATCTCCTCC	.	121	15	119	0	.	0	0	0	0	0	-	226032264	CTC	-	226032262	7	5	33	1	0	1	0	1	0	0	0	0	5192	903	32	0	1130	0	EPHX1	1	226032262	In_Frame_Del	DEL	CTC	TCGA-OR-A5KP-01A-11D-A30A-10	24693300	226032262	23218359	12	7980										
IRF2BP2	359948	hgsc.bcm.edu	37	chr1	234744413	234744413	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0408163265306122	6	1	0.955010859447719	1.5007313505607	0.808086111840378	0.592074592074592	1	0	ctcagctcggcggccccggcCgcggtggacaggctgtcggc	17	16	1	0	rs4636	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	IRF2BP2-90	NM_182972	exon1	c.G828T	p.A276A	CCCGGCCGCGGTG	.	8	5	0	0	C|0.714;A|0.286	0	0	0	0	0	A	234744413	C	A	234744413	2	1	33	1	0	0	0	0	0	0	0	1	7851	639	23	2		2	IRF2BP2	1	234744413	Silent	SNP	C	TCGA-OR-A5KP-01A-11D-A30A-10	8712151	234744413	14506208	13	7981										
RYR2	6262	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	237580422	237580422	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0408163265306122	6	1	0.955010859447719	1.5007313505607	0.808086111840378	0.592074592074592	1	0	gactagagacgctaagagttGcgtaagtagaacttctaaac	10	7	1	3	novel		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	RYR2-158	NM_001035	exon11	c.G847A	p.A283T	AGAGTTGCGTAAG	.	178	20	133	0	.	0	0	0	0	0	A	237580422	G	A	237580422	3	1	33	1	0	0	0	0	1	0	0	0	13804	1333	46	3	889	3	RYR2	1	237580422	Missense_Mutation	SNP	G	TCGA-OR-A5KP-01A-11D-A30A-10	2836009	237580422	11670199	14	7982										
TPO	7173	hgsc.bcm.edu	37	chr2	1481231	1481231	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0408163265306122	6	1	0.955010859447719	1.5007313505607	0.808086111840378	0.592074592074592	1	0	ggccggagacggccgcgccaGcgaggtcccctccctgacgg	16	17	0	2	rs2175977	byfrequency	TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	TPO-332	NM_175719	exon8	c.G1193C	p.S398T	GCGCCAGCGAGGT	.	6	6	0	0	G|0.301;C|0.699	0	0	0	0	0	C	1481231	G	C	1481231	3	2	33	1	0	0	0	0	1	0	0	0	16448	971	34	3	1219	3	TPO	2	1481231	Missense_Mutation	SNP	G	TCGA-OR-A5KP-01A-11D-A30A-10		1481231	241718142	15	7983										
XDH	7498	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	31628802	31628802	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0408163265306122	6	1	0.955010859447719	1.5007313505607	0.808086111840378	0.592074592074592	1	0	tcaggtaggccaaaagggttGtctctggatctgcatttttc	11	8	3	0	novel		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	XDH-158	NM_000379	exon2	c.C71T	p.T24I	AGGGTTGTCTCTG	.	96	14	91	0	.	0	0	0	0	0	A	31628802	G	A	31628802	3	1	33	1	0	0	0	0	1	0	0	0	17464	1377	48	3	4070	3	XDH	2	31628802	Missense_Mutation	SNP	G	TCGA-OR-A5KP-01A-11D-A30A-10	30147571	31628802	211570571	16	7984										
CRIM1	51232	broad.mit.edu	37	chr2	36706642	36706642	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0408163265306122	6	1	0.955010859447719	1.5007313505607	0.808086111840378	0.592074592074592	1	0	actcatgttctcatttagatCcagtgtatccttttaataat	4	8	2	1	novel		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	CRIM1-118	NM_016441	exon7	c.C1177A	p.P393T	TTAGATCCAGTGT	.	111	15	46	1	.	0	0	0	0	0	A	36706642	C	A	36706642	3	1	33	1	0	0	0	0	1	0	0	0	3879	855	30	3	1203	3	CRIM1	2	36706642	Missense_Mutation	SNP	C	TCGA-OR-A5KP-01A-11D-A30A-10	5077840	36706642	206492731	17	7985										
CCDC88A	55704	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	55566683	55566683	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0408163265306122	6	1	0.955010859447719	1.5007313505607	0.808086111840378	0.592074592074592	1	0	agaatccacagtagtccgaaGctcttctacggtttttgtca	8	10	3	1	novel		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	CCDC88A-94	NM_018084	exon13	c.C1435G	p.L479V	TCCGAAGCTCTTC	.	53	13	38	0	.	0	0	0	0	0	C	55566683	G	C	55566683	3	2	33	1	0	0	0	0	1	0	0	0	2869	971	34	3	4260	3	CCDC88A	2	55566683	Missense_Mutation	SNP	G	TCGA-OR-A5KP-01A-11D-A30A-10	18860041	55566683	187632690	18	7986										
ARHGAP15	55843	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	144381828	144381828	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0408163265306122	6	1	0.955010859447719	1.5007313505607	0.808086111840378	0.592074592074592	1	0	tttctttgagcagtttgtggAagcgatcagtaagtacctca	10	7	3	1	novel		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	ARHGAP15-653	NM_018460	exon12	c.A1130G	p.E377G	TTGTGGAAGCGAT	.	118	13	73	0	.	0	0	0	0	0	G	144381828	A	G	144381828	3	3	33	1	0	0	0	0	1	0	0	0	866	246	9	4	1172	4	ARHGAP15	2	144381828	Missense_Mutation	SNP	A	TCGA-OR-A5KP-01A-11D-A30A-10	88815145	144381828	98817545	19	7987										
CPNE9	151835	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	9754512	9754512	+	Splice_Site	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0408163265306122	6	1	0.955010859447719	1.5007313505607	0.808086111840378	0.592074592074592	1	0	caggagcaatgaggatggcaCgtgagtcactgccatcaggg	15	9	2	2	rs190521882	by1000genomes	TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	CPNE9-70	.	.	.	.	ATGGCACGTGAGT	.	79	14	108	0	C|0.999;T|0.000	0	0	0	0	0	T	9754512	C	T	9754512	5	4	33	1	0	0	0	0	0	0	1	0	3825	550	19	1	575	1	CPNE9	3	9754512	Splice_Site	SNP	C	TCGA-OR-A5KP-01A-11D-A30A-10		9754512	188267918	20	7988										
PRRT3	285368	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr3	9991595	9991596	+	Frame_Shift_Del	DEL	TG	TG	-													0.0408163265306122	6	1	0.955010859447719	1.5007313505607	0.808086111840378	0.592074592074592	1	0	gacatcagagttcctgtgacTgtcagctctggggttctccg					novel		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	TG	TG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	PRRT3-90	NM_207351	exon2	c.204_205del	p.68_69del	TGTGACTGTCAGC	.	82	14	92	0	.	0	0	0	0	0	-	9991596	TG	-	9991595	7	5	33	1	0	1	0	1	0	0	0	0	12643	1580	55	0	2752	0	PRRT3	3	9991595	Frame_Shift_Del	DEL	TG	TCGA-OR-A5KP-01A-11D-A30A-10	237083	9991595	188030835	21	7989										
STAB1	23166	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	52554031	52554031	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0408163265306122	6	1	0.955010859447719	1.5007313505607	0.808086111840378	0.592074592074592	1	0	atgctgtggcccacagacgcCgcctttcgagctctgcctcc	10	17	1	1	rs145377358		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	STAB1-139	NM_015136	exon51	c.C5307T	p.A1769A	AGACGCCGCCTTT	.	149	26	162	0	C|1.000;T|0.000	0	0	0	0	0	T	52554031	C	T	52554031	2	4	33	1	0	0	0	0	0	0	0	1	15274	639	23	1		1	STAB1	3	52554031	Silent	SNP	C	TCGA-OR-A5KP-01A-11D-A30A-10	42562436	52554031	145468399	22	7990										
DNAH12	201625	bcgsc.ca	37	chr3	57494915	57494915	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0408163265306122	6	1	0.955010859447719	1.5007313505607	0.808086111840378	0.592074592074592	1	0	catcttcaagcgatttaactGgtggtttcacaagaacgctc	8	10	3	1	rs115576589	byfrequency	TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	DNAH12-47	NM_198564	exon6	c.C494A	p.P165Q	TTAACTGGTGGTT	.	170	6	270	0	G|0.990;T|0.010	0	0	0	0	0	T	57494915	G	T	57494915	3	4	33	1	0	0	0	0	1	0	0	0	4611	1348	47	3	9043	3	DNAH12	3	57494915	Missense_Mutation	SNP	G	TCGA-OR-A5KP-01A-11D-A30A-10	4940884	57494915	140527515	23	7991										
PLXNA1	5361	hgsc.bcm.edu	37	chr3	126733053	126733053	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0408163265306122	6	1	0.955010859447719	1.5007313505607	0.808086111840378	0.592074592074592	1	0	tacaagtgcccggccctgcgCgagagctgcggcctctgcct	13	16	1	1	rs11719489	byfrequency	TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	PLXNA1-93	NM_032242	exon11	c.C2439T	p.R813R	CCTGCGCGAGAGC	.	24	11	1	0	C|0.900;T|0.100	0	0	0	0	0	T	126733053	C	T	126733053	2	4	33	1	0	0	0	0	0	0	0	1	12148	755	27	1		1	PLXNA1	3	126733053	Silent	SNP	C	TCGA-OR-A5KP-01A-11D-A30A-10	69238138	126733053	71289377	24	7992										
IDUA	3425	broad.mit.edu	37	chr4	996204	996204	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0408163265306122	6	1	0.955010859447719	1.5007313505607	0.808086111840378	0.592074592074592	1	0	cgcgcttccaggtcaacaacAcccgcccgccgcacgtgcag	10	19	1	0	novel		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	IDUA-91	NM_000203	exon8	c.A1120C	p.T374P	AACAACACCCGCC	.	203	71	72	9	.	0	0	0	0	0	C	996204	A	C	996204	3	2	33	1	0	0	0	0	1	0	0	0	7525	159	6	5	1150	5	IDUA	4	996204	Missense_Mutation	SNP	A	TCGA-OR-A5KP-01A-11D-A30A-10		996204	190158072	25	7993										
PCDH7	5099	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr4	30726021	30726021	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0408163265306122	6	1	0.955010859447719	1.5007313505607	0.808086111840378	0.592074592074592	1	0	ggcccggcagtcctgacctgGcaaggcattacaaatctagt	11	12	1	1	novel		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	PCDH7-229	NM_032457	exon1	c.G2977A	p.A993T	GACCTGGCAAGGC	.	105	9	84	0	.	0	0	0	0	0	A	30726021	G	A	30726021	3	1	33	1	0	0	0	0	1	0	0	0	11545	1203	42	3	2979	3	PCDH7	4	30726021	Missense_Mutation	SNP	G	TCGA-OR-A5KP-01A-11D-A30A-10	29729817	30726021	160428255	26	7994										
POLR2B	5431	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	57889711	57889711	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0408163265306122	6	1	0.955010859447719	1.5007313505607	0.808086111840378	0.592074592074592	1	0	tggatcaggttatggtaactCtcaatcaggaaggatataaa	10	5	3	0	novel		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	POLR2B-92	NM_000938	exon19	c.C2731A	p.L911I	GTAACTCTCAATC	.	78	13	74	0	.	0	0	0	0	0	A	57889711	C	A	57889711	3	1	33	1	0	0	0	0	1	0	0	0	12244	913	32	3	2805	3	POLR2B	4	57889711	Missense_Mutation	SNP	C	TCGA-OR-A5KP-01A-11D-A30A-10	27163690	57889711	133264565	27	7995										
ADH6	130	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	100131302	100131302	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0408163265306122	6	1	0.955010859447719	1.5007313505607	0.808086111840378	0.592074592074592	1	0	cagctaattaggcatactttCtctagaggagcgactgcatc	9	10	1	1	novel		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	ADH6-228	NM_000672	exon5	c.G504A	p.E168E	TACTTTCTCTAGA	.	88	17	63	0	.	0	0	0	0	0	T	100131302	C	T	100131302	2	4	33	1	0	0	0	0	0	0	0	1	312	912	32	3		3	ADH6	4	100131302	Silent	SNP	C	TCGA-OR-A5KP-01A-11D-A30A-10	42241591	100131302	91022974	28	7996										
SLC39A8	64116	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	103180638	103180638	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0408163265306122	6	1	0.955010859447719	1.5007313505607	0.808086111840378	0.592074592074592	1	0	tatccaaagtaaatgaagttGagatttgatgtcatcagtag	9	4	2	3	novel		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	SLC39A8-90	NM_001135147	exon10	c.C1300G	p.Q434E	GAAGTTGAGATTT	.	73	19	75	0	.	0	0	0	0	0	C	103180638	G	C	103180638	3	2	33	1	0	0	0	0	1	0	0	0	14659	1299	45	3	42	3	SLC39A8	4	103180638	Missense_Mutation	SNP	G	TCGA-OR-A5KP-01A-11D-A30A-10	3049336	103180638	87973638	29	7997										
DCHS2	54798	broad.mit.edu	37	chr4	155412464	155412464	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0408163265306122	6	1	0.955010859447719	1.5007313505607	0.808086111840378	0.592074592074592	1	0	gcttcccgaccggagcccgcCgctgctgacgcccttcgccc	11	21	0	1	rs13149269	byfrequency	TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	DCHS2-94	NM_001142552	exon1	c.G44A	p.R15Q	GCCCGCCGCTGCT	.	159	6	65	1	C|0.652;N|0.001	0	0	0	0	0	T	155412464	C	T	155412464	3	4	33	1	0	0	0	0	1	0	0	0	4294	652	23	1	11040	1	DCHS2	4	155412464	Missense_Mutation	SNP	C	TCGA-OR-A5KP-01A-11D-A30A-10	52231826	155412464	35741812	30	7998										
DNAH5	1767	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr5	13792259	13792259	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0408163265306122	6	1	0.955010859447719	1.5007313505607	0.808086111840378	0.592074592074592	1	0	cgtgtcagaggcaccaatttTgtcacagaatctctcacttc	7	12	4	2	novel		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	DNAH5-182	NM_001369	exon50	c.A8292G	p.T2764T	CAATTTTGTCACA	.	82	5	57	0	.	0	0	0	0	0	C	13792259	T	C	13792259	2	2	33	1	0	0	0	0	0	0	0	1	4615	1799	63	4		4	DNAH5	5	13792259	Silent	SNP	T	TCGA-OR-A5KP-01A-11D-A30A-10		13792259	167123001	31	7999										
RAI14	26064	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	34823555	34823555	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0408163265306122	6	1	0.955010859447719	1.5007313505607	0.808086111840378	0.592074592074592	1	0	gaggaaataaatgtgctaaaGcaggatctgcagaatgcatt	11	5	1	1	novel		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	RAI14-91	NM_001145525	exon17	c.G1617A	p.K539K	GCTAAAGCAGGAT	.	117	18	90	0	.	0	0	0	0	0	A	34823555	G	A	34823555	2	1	33	1	0	0	0	0	0	0	0	1	13043	962	34	3		3	RAI14	5	34823555	Silent	SNP	G	TCGA-OR-A5KP-01A-11D-A30A-10	21031296	34823555	146091705	32	8000										
ADAMTS19	171019	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	128977578	128977578	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0408163265306122	6	1	0.955010859447719	1.5007313505607	0.808086111840378	0.592074592074592	1	0	atttgcacaggattatggtgCaaggtagaaggtgagaaaga	14	3	0	3	novel		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	ADAMTS19-295	NM_133638	exon11	c.C1779G	p.C593W	ATGGTGCAAGGTA	.	161	37	104	0	.	0	0	0	0	0	G	128977578	C	G	128977578	3	3	33	1	0	0	0	0	1	0	0	0	264	718	25	3	1821	3	ADAMTS19	5	128977578	Missense_Mutation	SNP	C	TCGA-OR-A5KP-01A-11D-A30A-10	94154023	128977578	51937682	33	8001										
GEMIN5	25929	bcgsc.ca	37	chr5	154299581	154299581	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0408163265306122	6	1	0.955010859447719	1.5007313505607	0.808086111840378	0.592074592074592	1	0	atgtcaaaggcttctccactAagcttccagggattatgctg	9	10	2	0	rs61758976	byfrequency	TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	GEMIN5-228	NM_015465	exon11	c.T1545C	p.L515L	TCCACTAAGCTTC	.	164	7	129	0	A|0.990;G|0.010	0	0	0	0	0	G	154299581	A	G	154299581	2	3	33	1	0	0	0	0	0	0	0	1	6351	349	13	4		4	GEMIN5	5	154299581	Silent	SNP	A	TCGA-OR-A5KP-01A-11D-A30A-10	25322003	154299581	26615679	34	8002										
RREB1	6239	hgsc.bcm.edu	37	chr6	7230680	7230680	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0408163265306122	6	1	0.955010859447719	1.5007313505607	0.808086111840378	0.592074592074592	1	0	cggccgcggcctgggcggggGccacaagggccgcaagccct	18	16	0	0	rs9502564	byfrequency	TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	RREB1-144	NM_001003700	exon10	c.G2348T	p.G783V	GCGGGGGCCACAA	.	16	5	2	0	G|0.546;T|0.454	0	0	0	0	0	T	7230680	G	T	7230680	3	4	33	1	0	0	0	0	1	0	0	0	13714	1203	42	3	2374	3	RREB1	6	7230680	Missense_Mutation	SNP	G	TCGA-OR-A5KP-01A-11D-A30A-10		7230680	163884387	35	8003										
MAK	4117	broad.mit.edu	37	chr6	10796402	10796402	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0408163265306122	6	1	0.955010859447719	1.5007313505607	0.808086111840378	0.592074592074592	1	0	acctgatcgattatatccggCagaggcttaggctctacctc	9	12	1	2	novel		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	MAK-335	NM_005906	exon9	c.G972C	p.L324L	ATCCGGCAGAGGC	.	108	3	91	1	.	0	0	0	0	0	G	10796402	C	G	10796402	2	3	33	1	0	0	0	0	0	0	0	1	9225	697	25	3		3	MAK	6	10796402	Silent	SNP	C	TCGA-OR-A5KP-01A-11D-A30A-10	3565722	10796402	160318665	36	8004										
KIF13A	63971	bcgsc.ca	37	chr6	17987327	17987327	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0408163265306122	6	1	0.955010859447719	1.5007313505607	0.808086111840378	0.592074592074592	1	0	aaggaggagggtgcaggaccGtttgattcccttccatctcc	12	11	1	1	novel		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	KIF13A-137	NM_001105567	exon2	c.C104A	p.T35K	AGGACCGTTTGAT	.	187	6	125	0	.	0	0	0	0	0	T	17987327	G	T	17987327	3	4	33	1	0	0	0	0	1	0	0	0	8295	1145	40	2	5490	2	KIF13A	6	17987327	Missense_Mutation	SNP	G	TCGA-OR-A5KP-01A-11D-A30A-10	7190925	17987327	153127740	37	8005										
HIST1H1A	3024	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	26017333	26017333	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0408163265306122	6	1	0.955010859447719	1.5007313505607	0.808086111840378	0.592074592074592	1	0	ttactttttcttgggtgccgCtttcttgggtttggcagtct	11	8	3	0	novel		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	HIST1H1A-92	NM_005325	exon1	c.G628A	p.A210T	GTGCCGCTTTCTT	.	135	20	102	0	.	0	0	0	0	0	T	26017333	C	T	26017333	3	4	33	1	0	0	0	0	1	0	0	0	7143	797	28	3	23	3	HIST1H1A	6	26017333	Missense_Mutation	SNP	C	TCGA-OR-A5KP-01A-11D-A30A-10	8030006	26017333	145097734	38	8006										
NKAPL	222698	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	28227192	28227192	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0408163265306122	6	1	0.955010859447719	1.5007313505607	0.808086111840378	0.592074592074592	1	0	gctattccgaggacatcgtgGgctctcggagaaggcgacgc	15	11	1	1	rs144318583	alternate_allele	TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	NKAPL-70	NM_001007531	exon1	c.G43A	p.G15S	ATCGTGGGCTCTC	.	194	46	133	0	G|1.000;T|0.000	0	0	0	0	0	A	28227192	G	A	28227192	3	1	33	1	0	0	0	0	1	0	0	0	10469	1232	43	3	45	3	NKAPL	6	28227192	Missense_Mutation	SNP	G	TCGA-OR-A5KP-01A-11D-A30A-10	2209859	28227192	142887875	39	8007										
C6orf136	221545	hgsc.bcm.edu	37	chr6	30615205	30615205	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0408163265306122	6	1	0.955010859447719	1.5007313505607	0.808086111840378	0.592074592074592	1	0	acacccgccgccccttcccaCctgtgccctgcagcgcgtgg	10	21	0	0	novel		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	C6orf136-90	NM_001161376	exon1	c.C197T	p.T66I	TTCCCACCTGTGC	.	17	13	1	0	.	0	0	0	0	0	T	30615205	C	T	30615205	3	4	33	1	0	0	0	0	1	0	0	0	2337	507	18	3	199	3	C6orf136	6	30615205	Missense_Mutation	SNP	C	TCGA-OR-A5KP-01A-11D-A30A-10	2388013	30615205	140499862	40	8008										
KCNK17	89822	hgsc.bcm.edu	37	chr6	39282036	39282036	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0408163265306122	6	1	0.955010859447719	1.5007313505607	0.808086111840378	0.592074592074592	1	0	gagcagcaggagcacggtgcTgggcaccgcgcagccccgga	17	14	0	0	rs10947804	byfrequency	TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	KCNK17-227	NM_001135111	exon1	c.A61G	p.S21G	CGGTGCTGGGCAC	.	15	11	1	0	T|0.441;C|0.559	0	0	0	0	0	C	39282036	T	C	39282036	3	2	33	1	0	0	0	0	1	0	0	0	8085	1580	55	4	1089	4	KCNK17	6	39282036	Missense_Mutation	SNP	T	TCGA-OR-A5KP-01A-11D-A30A-10	8666831	39282036	131833031	41	8009										
TIAM2	26230	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	155503406	155503406	+	Silent	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0408163265306122	6	1	0.955010859447719	1.5007313505607	0.808086111840378	0.592074592074592	1	0	gagcgtcagcatctcagccgGatatttataagcgacgttct	10	10	3	0	novel		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	TIAM2-93	NM_012454	exon12	c.G2754T	p.R918R	CAGCCGGATATTT	.	203	48	135	1	.	0	0	0	0	0	T	155503406	G	T	155503406	2	4	33	1	0	0	0	0	0	0	0	1	15928	1161	41	3		3	TIAM2	6	155503406	Silent	SNP	G	TCGA-OR-A5KP-01A-11D-A30A-10	116221370	155503406	15611661	42	8010										
GPNMB	10457	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	23313809	23313809	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0408163265306122	6	1	0.955010859447719	1.5007313505607	0.808086111840378	0.592074592074592	1	0	aaaccaggaaaaggatccgcTactcaaaaaccaagaattta	6	9	1	1	novel		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	GPNMB-580	NM_001005340	exon11	c.T1685C	p.L562P	ATCCGCTACTCAA	.	44	11	51	0	.	0	0	0	0	0	C	23313809	T	C	23313809	3	2	33	1	0	0	0	0	1	0	0	0	6640	1522	53	4	1727	4	GPNMB	7	23313809	Missense_Mutation	SNP	T	TCGA-OR-A5KP-01A-11D-A30A-10		23313809	135824854	43	8011										
GARS	2617	hgsc.bcm.edu	37	chr7	30634661	30634661	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0408163265306122	6	1	0.955010859447719	1.5007313505607	0.808086111840378	0.592074592074592	1	0	ccctcagcgcggcctcctgcCccccgatctccttgcccgcc	8	24	2	0	rs1049402	byfrequency	TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	GARS-91	NM_002047	exon1	c.C124G	p.P42A	TCCTGCCCCCCGA	.	8	8	0	0	C|0.329;G|0.671	0	0	0	0	0	G	30634661	C	G	30634661	3	3	33	1	0	0	0	0	1	0	0	0	6262	623	22	3	126	3	GARS	7	30634661	Missense_Mutation	SNP	C	TCGA-OR-A5KP-01A-11D-A30A-10	7320852	30634661	128504002	44	8012										
FZD9	8326	hgsc.bcm.edu	37	chr7	72848664	72848664	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0408163265306122	6	1	0.955010859447719	1.5007313505607	0.808086111840378	0.592074592074592	1	0	caggtctcgacgcccattccCgcctgccggcccatgtgcga	11	18	1	0	rs142125301	byfrequency	TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	FZD9-1082	NM_003508	exon1	c.C327T	p.P109P	CATTCCCGCCTGC	.	32	12	0	0	C|0.998;T|0.002	0	0	0	0	0	T	72848664	C	T	72848664	2	4	33	1	0	0	0	0	0	0	0	1	6156	639	23	1		1	FZD9	7	72848664	Silent	SNP	C	TCGA-OR-A5KP-01A-11D-A30A-10	42214003	72848664	86289999	45	8013										
DBF4	10926	broad.mit.edu;bcgsc.ca	37	chr7	87529633	87529633	+	Frame_Shift_Del	DEL	A	A	-													0.0408163265306122	6	1	0.955010859447719	1.5007313505607	0.808086111840378	0.592074592074592	1	0	ttgatgtagacaagccatctAgtatgcaaaagcaaactcag					novel		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	DBF4-253	NM_006716	exon9	c.778delA	p.S260fs	CCATCTAGTATGC	.	94	12	95	0	.	0	0	0	0	0	-	87529633	A	-	87529633	7	5	33	1	0	1	0	1	0	0	0	0	4254	420	15	0	812	0	DBF4	7	87529633	Frame_Shift_Del	DEL	A	TCGA-OR-A5KP-01A-11D-A30A-10	14680969	87529633	71609030	46	8014										
FZD1	8321	hgsc.bcm.edu	37	chr7	90894459	90894460	+	In_Frame_Ins	INS	-	-	CCG													0.0408163265306122	6	1	0.955010859447719	1.5007313505607	0.808086111840378	0.592074592074592	1	0	ggcccgggccggggcagcaaINSccgccgccgccgcctcagca					rs139480179		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	FZD1-658	NM_003505	exon1	c.264_265insCCG	p.Q88delinsQP	GCAGCAACCGCCG	.	25	16	7	2	-|0.606;CCG|0.394	0	0	0	0	0	CCG	90894460	-	CCG	90894459	7	5	33	1	0	1	1	0	0	0	0	0	6147	40	2	0	266	0	FZD1	7	90894459	In_Frame_Ins	INS	-	TCGA-OR-A5KP-01A-11D-A30A-10	3364826	90894459	68244204	47	8015										
ZNF775	285971	hgsc.bcm.edu	37	chr7	150094851	150094851	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0408163265306122	6	1	0.955010859447719	1.5007313505607	0.808086111840378	0.592074592074592	1	0	ggtccccgggggcccgggacAcgctgtggggccggggacaa	20	13	0	0	rs13225910		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	ZNF775-90	NM_173680	exon3	c.A1282G	p.T428A	CGGGACACGCTGT	.	9	9	2	0	A|0.578;G|0.422	0	0	0	0	0	G	150094851	A	G	150094851	3	3	33	1	0	0	0	0	1	0	0	0	18185	159	6	4	1288	4	ZNF775	7	150094851	Missense_Mutation	SNP	A	TCGA-OR-A5KP-01A-11D-A30A-10	59200392	150094851	9043812	48	8016										
MLL3	58508	broad.mit.edu	37	chr7	151843708	151843709	+	Frame_Shift_Del	DEL	AG	AG	-													0.0408163265306122	6	1	0.955010859447719	1.5007313505607	0.808086111840378	0.592074592074592	1	0	tccgctatgcgtgccactgcAgagacggtcaggccaaacag					novel		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	MLL3-1398	NM_170606	exon53	c.14006_14007del	p.4669_4669del	CACTGCAGAGACG	.	56	9	32	0	.	0	0	0	0	0	-	151843709	AG	-	151843708	7	5	33	1	0	1	0	1	0	0	0	0	9650	175	7	0	756	0	MLL3	7	151843708	Frame_Shift_Del	DEL	AG	TCGA-OR-A5KP-01A-11D-A30A-10	1748857	151843708	7294955	49	8017										
SLC20A2	6575	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	42317494	42317494	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0408163265306122	6	1	0.955010859447719	1.5007313505607	0.808086111840378	0.592074592074592	1	0	ctgggagtgcccggaggccaTtgggaacagggtcttcctgt	16	10	1	0	rs142888552	byfrequency	TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	SLC20A2-92	NM_001257181	exon5	c.A533G	p.N178S	AGGCCATTGGGAA	.	106	27	117	0	T|0.999;C|0.001	0	0	0	0	0	C	42317494	T	C	42317494	3	2	33	1	0	0	0	0	1	0	0	0	14474	1493	52	4	1453	4	SLC20A2	8	42317494	Missense_Mutation	SNP	T	TCGA-OR-A5KP-01A-11D-A30A-10		42317494	104046528	50	8018										
MAL2	114569	hgsc.bcm.edu	37	chr8	120220776	120220776	+	Splice_Site	DEL	G	G	-													0.0408163265306122	6	1	0.955010859447719	1.5007313505607	0.808086111840378	0.592074592074592	1	0	cgtgtccttcccgccgccccGgggtcaccctgcccgccggc					novel		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	.	NM_052886	exon1	c.64+1G>-	.	CGCCCCGGGGTCA	.	14	14	0	0	.	0	0	0	0	0	-	120220776	G	-	120220776	8	5	33	1	0	1	0	1	0	0	1	0	9228	1116	39	0	67	0	MAL2	8	120220776	Splice_Site	DEL	G	TCGA-OR-A5KP-01A-11D-A30A-10	77903282	120220776	26143246	51	8019										
POU5F1B	5462	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	128428589	128428589	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0408163265306122	6	1	0.955010859447719	1.5007313505607	0.808086111840378	0.592074592074592	1	0	tgaagcagaagaggatcaccCtgggatatacacaggccgat	12	9	1	3	novel		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	.	NM_001159542	exon1	c.C478T	p.L160L	ATCACCCTGGGAT	.	53	5	48	0	.	0	0	0	0	0	T	128428589	C	T	128428589	2	4	33	1	0	0	0	0	0	0	0	1	12311	680	24	3		3	POU5F1B	8	128428589	Silent	SNP	C	TCGA-OR-A5KP-01A-11D-A30A-10	8207813	128428589	17935433	52	8020										
ZNF696	79943	hgsc.bcm.edu	37	chr8	144378868	144378868	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0408163265306122	6	1	0.955010859447719	1.5007313505607	0.808086111840378	0.592074592074592	1	0	ggcttcttccggcaccagcgActccacacgggcgagaagcc	12	16	1	1	rs7386259	byfrequency	TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	ZNF696-90	NM_030895	exon3	c.A1023G	p.R341R	CCAGCGACTCCAC	.	4	4	0	0	A|0.118;G|0.882	0	0	0	0	0	G	144378868	A	G	144378868	2	3	33	1	0	0	0	0	0	0	0	1	18136	262	10	4		4	ZNF696	8	144378868	Silent	SNP	A	TCGA-OR-A5KP-01A-11D-A30A-10	15950279	144378868	1985154	53	8021										
PLEC	5339	hgsc.bcm.edu	37	chr8	145001588	145001588	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0408163265306122	6	1	0.955010859447719	1.5007313505607	0.808086111840378	0.592074592074592	1	0	ccaagcccacctgctcctgcCgcagctgctcccgcacagcc	8	22	0	0	rs11136334	byfrequency	TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	PLEC-141	NM_201380	exon27	c.G4157A	p.R1386Q	TCCTGCCGCAGCT	.	15	7	1	0	C|0.707;T|0.293	0	0	0	0	0	T	145001588	C	T	145001588	3	4	33	1	0	0	0	0	1	0	0	0	12081	652	23	1	9921	1	PLEC	8	145001588	Missense_Mutation	SNP	C	TCGA-OR-A5KP-01A-11D-A30A-10	622720	145001588	1362434	54	8022										
ERMP1	79956	hgsc.bcm.edu	37	chr9	5832728	5832728	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0408163265306122	6	1	0.955010859447719	1.5007313505607	0.808086111840378	0.592074592074592	1	0	aactccccgcggtgtccagcGgccccgcgtagcacgagctg	13	17	0	0	rs1131727	byfrequency	TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	ERMP1-69	NM_024896	exon1	c.C300G	p.A100A	TCCAGCGGCCCCG	.	15	6	0	0	G|0.572;C|0.428	0	0	0	0	0	C	5832728	G	C	5832728	2	2	33	1	0	0	0	0	0	0	0	1	5249	1103	39	2		2	ERMP1	9	5832728	Silent	SNP	G	TCGA-OR-A5KP-01A-11D-A30A-10		5832728	135380703	55	8023										
HDHD3	81932	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr9	116135916	116135916	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0408163265306122	6	1	0.955010859447719	1.5007313505607	0.808086111840378	0.592074592074592	1	0	agccctctaggcagtcaaggGcaggcaggagatgggccaga	16	10	2	2	novel		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	HDHD3-90	NM_031219	exon2	c.C719T	p.A240V	TCAAGGGCAGGCA	.	58	16	53	0	.	0	0	0	0	0	A	116135916	G	A	116135916	3	1	33	1	0	0	0	0	1	0	0	0	7045	1203	42	3	40	3	HDHD3	9	116135916	Missense_Mutation	SNP	G	TCGA-OR-A5KP-01A-11D-A30A-10	110303188	116135916	25077515	56	8024										
CACNA1B	774	hgsc.bcm.edu	37	chr9	140917779	140917779	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0408163265306122	6	1	0.955010859447719	1.5007313505607	0.808086111840378	0.592074592074592	1	0	gcgacaaggacaagacccccGcggcgggggaccaggaccga	16	14	0	1	rs7873074	byfrequency	TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	CACNA1B-138	NM_001243812	exon19	c.G2584T	p.A862S	ACCCCCGCGGCGG	.	5	5	0	0	G|0.601;T|0.399	0	0	0	0	0	T	140917779	G	T	140917779	3	4	33	1	0	0	0	0	1	0	0	0	2545	1087	38	2	2658	2	CACNA1B	9	140917779	Missense_Mutation	SNP	G	TCGA-OR-A5KP-01A-11D-A30A-10	24781863	140917779	295652	57	8025										
TUBAL3	79861	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	5436106	5436107	+	Missense_Mutation	DNP	CC	CC	AA													0.0408163265306122	6	1	0.955010859447719	1.5007313505607	0.808086111840378	0.592074592074592	1	0	gatggaagataccacctgaaCcaccaatctattgatgctgg					novel		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	CC	CC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	TUBAL3-91	NM_024803	exon4	c.G714T	p.V239F	CTGAACCACCAAT	.	354	16	246	0	.	0	0	0	0	0	AA	5436107	CC	AA	5436106	3	1	33	1	0	0	0	0	1	0	0	0	16789	507	18	3	629	3	TUBAL3	10	5436106	Missense_Mutation	DNP	CC	TCGA-OR-A5KP-01A-11D-A30A-10		5436106	130098641	58	8026										
TET1	80312	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr10	70406351	70406351	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0408163265306122	6	1	0.955010859447719	1.5007313505607	0.808086111840378	0.592074592074592	1	0	ataattctcaggtacagttaAcggtgaatgccaatcagaaa	8	7	2	2	novel		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	TET1-663	NM_030625	exon4	c.A3865C	p.T1289P	CAGTTAACGGTGA	.	165	36	152	0	.	0	0	0	0	0	C	70406351	A	C	70406351	3	2	33	1	0	0	0	0	1	0	0	0	15806	43	2	5	3875	5	TET1	10	70406351	Missense_Mutation	SNP	A	TCGA-OR-A5KP-01A-11D-A30A-10	64970245	70406351	65128396	59	8027										
HKDC1	80201	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr10	71017117	71017117	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0408163265306122	6	1	0.955010859447719	1.5007313505607	0.808086111840378	0.592074592074592	1	0	cattgttgcagtcgtgaatgAtacagtggggaccatgatga	13	6	0	4	novel		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	HKDC1-95	NM_025130	exon14	c.A1967G	p.D656G	TGAATGATACAGT	.	202	26	139	0	.	0	0	0	0	0	G	71017117	A	G	71017117	3	3	33	1	0	0	0	0	1	0	0	0	7214	333	12	4	2021	4	HKDC1	10	71017117	Missense_Mutation	SNP	A	TCGA-OR-A5KP-01A-11D-A30A-10	610766	71017117	64517630	60	8028										
BTAF1	9044	hgsc.bcm.edu	37	chr10	93726392	93726392	+	Splice_Site	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0408163265306122	6	1	0.955010859447719	1.5007313505607	0.808086111840378	0.592074592074592	1	0	taatttgtgtcttctttattAgtattcagcagtcactgaca	6	7	4	1	novel		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	BTAF1-92	NM_003972	exon14	c.1530-2A>G	.	TTTATTAGTATTC	.	74	4	42	0	.	0	0	0	0	0	G	93726392	A	G	93726392	5	3	33	1	0	0	0	0	0	0	1	0	1539	434	15	4	1582	4	BTAF1	10	93726392	Splice_Site	SNP	A	TCGA-OR-A5KP-01A-11D-A30A-10	22709275	93726392	41808355	61	8029										
NFKB2	4791	hgsc.bcm.edu	37	chr10	104159196	104159196	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0408163265306122	6	1	0.955010859447719	1.5007313505607	0.808086111840378	0.592074592074592	1	0	ggggaggaagccgcggagccAagcgccccctccaggacccc	15	17	0	0	rs4919633	byfrequency	TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	NFKB2-522	NM_001077494	exon13	c.A1269G	p.P423P	GGAGCCAAGCGCC	.	19	19	0	0	A|0.009;G|0.991	0	0	0	0	0	G	104159196	A	G	104159196	2	3	33	1	0	0	0	0	0	0	0	1	10405	117	5	4		4	NFKB2	10	104159196	Silent	SNP	A	TCGA-OR-A5KP-01A-11D-A30A-10	10432804	104159196	31375551	62	8030										
SORCS3	22986	hgsc.bcm.edu;bcgsc.ca	37	chr10	106976865	106976865	+	Frame_Shift_Del	DEL	T	T	-													0.0408163265306122	6	1	0.955010859447719	1.5007313505607	0.808086111840378	0.592074592074592	1	0	gctcagacacagctgtcctcTtcctgcatgtggtttgtaag					novel		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	SORCS3-99	NM_014978	exon19	c.2719delT	p.F907fs	GTCCTCTTCCTGC	.	254	57	138	2	.	0	0	0	0	0	-	106976865	T	-	106976865	7	5	33	1	0	1	0	1	0	0	0	0	14967	1609	56	0	2793	0	SORCS3	10	106976865	Frame_Shift_Del	DEL	T	TCGA-OR-A5KP-01A-11D-A30A-10	2817669	106976865	28557882	63	8031										
SMC3	9126	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	112341738	112341738	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0408163265306122	6	1	0.955010859447719	1.5007313505607	0.808086111840378	0.592074592074592	1	0	cattgaagagagattacataCtctagaggaagaaaaggaag	11	4	1	5	novel		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	SMC3-92	NM_005445	exon9	c.C605T	p.T202I	TACATACTCTAGA	.	75	13	66	0	.	0	0	0	0	0	T	112341738	C	T	112341738	3	4	33	1	0	0	0	0	1	0	0	0	14819	565	20	3	639	3	SMC3	10	112341738	Missense_Mutation	SNP	C	TCGA-OR-A5KP-01A-11D-A30A-10	5364873	112341738	23193009	64	8032										
PWWP2B	170394	hgsc.bcm.edu	37	chr10	134219045	134219045	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0408163265306122	6	1	0.955010859447719	1.5007313505607	0.808086111840378	0.592074592074592	1	0	ggggacagcgagcacgagccCgtgtaccgggccgagctggt	18	12	0	0	rs11146364	byfrequency	TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	PWWP2B-90	NM_001098637	exon2	c.C1041T	p.P347P	CGAGCCCGTGTAC	.	23	9	0	0	C|0.860;T|0.140	0	0	0	0	0	T	134219045	C	T	134219045	2	4	33	1	0	0	0	0	0	0	0	1	12881	639	23	1		1	PWWP2B	10	134219045	Silent	SNP	C	TCGA-OR-A5KP-01A-11D-A30A-10	21877307	134219045	1315702	65	8033										
KNDC1	85442	bcgsc.ca	37	chr10	135010635	135010635	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0408163265306122	6	1	0.955010859447719	1.5007313505607	0.808086111840378	0.592074592074592	1	0	ccacctcagagcttccatctGccaggtgggctagaacagcc	10	15	2	2	rs41317288	byfrequency	TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	KNDC1-229	NM_152643	exon11	c.G1808A	p.C603Y	CCATCTGCCAGGT	.	332	10	162	1	G|0.981;A|0.019	0	0	0	0	0	A	135010635	G	A	135010635	3	1	33	1	0	0	0	0	1	0	0	0	8447	1319	46	3	1850	3	KNDC1	10	135010635	Missense_Mutation	SNP	G	TCGA-OR-A5KP-01A-11D-A30A-10	791590	135010635	524112	66	8034										
KNDC1	85442	hgsc.bcm.edu	37	chr10	135012429	135012429	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0408163265306122	6	1	0.955010859447719	1.5007313505607	0.808086111840378	0.592074592074592	1	0	tgagccgatcccacctggagTtgcttccgggggcctcaggc	14	14	1	1	rs3008390		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	KNDC1-229	NM_152643	exon14	c.T2417A	p.V806D	CTGGAGTTGCTTC	.	19	12	2	0	T|0.406;A|0.594	0	0	0	0	0	A	135012429	T	A	135012429	3	1	33	1	0	0	0	0	1	0	0	0	8447	1725	60	5	2471	5	KNDC1	10	135012429	Missense_Mutation	SNP	T	TCGA-OR-A5KP-01A-11D-A30A-10	1794	135012429	522318	67	8035										
SYT8	90019	hgsc.bcm.edu	37	chr11	1858572	1858572	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0408163265306122	6	1	0.955010859447719	1.5007313505607	0.808086111840378	0.592074592074592	1	0	cccggcggcccattgcccagCggcaccccctgcggccagcc	12	22	0	0	rs2292474	byfrequency	TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	SYT8-91	NM_138567	exon9	c.C1117T	p.R373W	GCCCAGCGGCACC	.	24	23	0	0	C|0.602;T|0.398	0	0	0	0	0	T	1858572	C	T	1858572	3	4	33	1	0	0	0	0	1	0	0	0	15517	759	27	1	1151	1	SYT8	11	1858572	Missense_Mutation	SNP	C	TCGA-OR-A5KP-01A-11D-A30A-10		1858572	133147944	68	8036										
PRKCDBP	112464	hgsc.bcm.edu	37	chr11	6341365	6341365	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0408163265306122	6	1	0.955010859447719	1.5007313505607	0.808086111840378	0.592074592074592	1	0	ttcccgcgcgccaccagcagCccgtggttggcctccagccg	12	19	0	0	rs11544764	byfrequency	TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	PRKCDBP-115	NM_145040	exon1	c.G342A	p.G114G	CAGCAGCCCGTGG	.	5	5	1	0	C|0.902;T|0.098	0	0	0	0	0	T	6341365	C	T	6341365	2	4	33	1	0	0	0	0	0	0	0	1	12542	726	26	3		3	PRKCDBP	11	6341365	Silent	SNP	C	TCGA-OR-A5KP-01A-11D-A30A-10	4482793	6341365	128665151	69	8037										
OR10A4	283297	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	6898684	6898684	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0408163265306122	6	1	0.955010859447719	1.5007313505607	0.808086111840378	0.592074592074592	1	0	accccaatccagtgcctcttCtgagagcaagaagctgctgt	9	13	2	2	novel		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	OR10A4-69	NM_207186	exon1	c.C806G	p.S269C	CCTCTTCTGAGAG	.	89	19	68	1	.	0	0	0	0	0	G	6898684	C	G	6898684	3	3	33	1	0	0	0	0	1	0	0	0	10921	913	32	3	808	3	OR10A4	11	6898684	Missense_Mutation	SNP	C	TCGA-OR-A5KP-01A-11D-A30A-10	557319	6898684	128107832	70	8038										
MRGPRX4	117196	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	18195200	18195200	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0408163265306122	6	1	0.955010859447719	1.5007313505607	0.808086111840378	0.592074592074592	1	0	ggcccatctggtaccgctgcCgccgccccacacacctgtca	9	20	2	0	novel		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	MRGPRX4-91	NM_054032	exon1	c.C397T	p.R133C	CGCTGCCGCCGCC	.	146	28	106	0	.	0	0	0	0	0	T	18195200	C	T	18195200	3	4	33	1	0	0	0	0	1	0	0	0	9797	652	23	1	399	1	MRGPRX4	11	18195200	Missense_Mutation	SNP	C	TCGA-OR-A5KP-01A-11D-A30A-10	11296516	18195200	116811316	71	8039										
GAL3ST3	89792	hgsc.bcm.edu	37	chr11	65810209	65810209	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0408163265306122	6	1	0.955010859447719	1.5007313505607	0.808086111840378	0.592074592074592	1	0	accttgcggctgggctgccaCggctgcagctgcttggtgcg	16	13	0	0	rs61895584	byfrequency	TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	GAL3ST3-91	NM_033036	exon3	c.G1065A	p.P355P	CTGCCACGGCTGC	.	8	5	0	0	C|0.233;T|0.767	0	0	0	0	0	T	65810209	C	T	65810209	2	4	33	1	0	0	0	0	0	0	0	1	6219	523	19	1		1	GAL3ST3	11	65810209	Silent	SNP	C	TCGA-OR-A5KP-01A-11D-A30A-10	47615009	65810209	69196307	72	8040										
PPP1CA	5499	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr11	67166486	67166487	+	Frame_Shift_Del	DEL	AG	AG	-													0.0408163265306122	6	1	0.955010859447719	1.5007313505607	0.808086111840378	0.592074592074592	1	0	acctcggctccaaaggtaaaAgagacgccacggtcgttctc					novel		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	AG	AG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	PPP1CA-659	NM_001008709	exon5	c.704_705del	p.235_235del	GGTAAAAGAGACG	.	108	25	98	0	.	0	0	0	0	0	-	67166487	AG	-	67166486	7	5	33	1	0	1	0	1	0	0	0	0	12381	59	3	0	332	0	PPP1CA	11	67166486	Frame_Shift_Del	DEL	AG	TCGA-OR-A5KP-01A-11D-A30A-10	1356277	67166486	67840030	73	8041										
CCDC81	60494	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	86086270	86086270	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0408163265306122	6	1	0.955010859447719	1.5007313505607	0.808086111840378	0.592074592074592	1	0	ggtgctgcccactctgccctCgctgagccaggagggtaagc	14	14	1	1	novel		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	CCDC81-91	NM_021827	exon1	c.C65T	p.S22L	TGCCCTCGCTGAG	.	37	11	32	0	.	0	0	0	0	0	T	86086270	C	T	86086270	3	4	33	1	0	0	0	0	1	0	0	0	2861	893	31	1	67	1	CCDC81	11	86086270	Missense_Mutation	SNP	C	TCGA-OR-A5KP-01A-11D-A30A-10	18919784	86086270	48920246	74	8042										
ATM	472	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr11	108123627	108123627	+	Frame_Shift_Del	DEL	G	G	-													0.0408163265306122	6	1	0.955010859447719	1.5007313505607	0.808086111840378	0.592074592074592	1	0	tgcaatgaattttttccaaaGcgtgccagaatggtatgtta					novel		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	ATM-3419	NM_000051	exon12	c.1886delG	p.S629fs	TCCAAAGCGTGCC	.	48	17	42	0	.	0	0	0	0	0	-	108123627	G	-	108123627	7	5	33	1	0	1	0	1	0	0	0	0	1110	971	34	0	1928	0	ATM	11	108123627	Frame_Shift_Del	DEL	G	TCGA-OR-A5KP-01A-11D-A30A-10	22037357	108123627	26882889	75	8043										
BHLHE41	79365	hgsc.bcm.edu	37	chr12	26275827	26275827	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0408163265306122	6	1	0.955010859447719	1.5007313505607	0.808086111840378	0.592074592074592	1	0	aggggctccagcttctgcccCgcgcgctccaggcagggggc	16	16	1	0	rs61754129		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	BHLHE41-226	NM_030762	exon5	c.G621C	p.A207A	CTGCCCCGCGCGC	.	22	12	0	0	.	0	0	0	0	0	G	26275827	C	G	26275827	2	3	33	1	0	0	0	0	0	0	0	1	1425	639	23	2		2	BHLHE41	12	26275827	Silent	SNP	C	TCGA-OR-A5KP-01A-11D-A30A-10		26275827	107576068	76	8044										
ITPR2	3709	ucsc.edu;bcgsc.ca	37	chr12	26732987	26732987	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0408163265306122	6	1	0.955010859447719	1.5007313505607	0.808086111840378	0.592074592074592	1	0	ctggtactattgtctgaaaaGggagaattaaagaagccgct	11	6	1	3	rs2230376	byfrequency	TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	ITPR2-542	NM_002223	exon33	c.C4482T	p.P1494P	TGAAAAGGGAGAA	.	25	4	20	0	G|0.794;A|0.206	0	0	0	0	0	A	26732987	G	A	26732987	2	1	33	1	0	0	0	0	0	0	0	1	7942	987	35	3		3	ITPR2	12	26732987	Silent	SNP	G	TCGA-OR-A5KP-01A-11D-A30A-10	457160	26732987	107118908	77	8045										
KRT78	196374	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	53233007	53233007	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0408163265306122	6	1	0.955010859447719	1.5007313505607	0.808086111840378	0.592074592074592	1	0	gcaggaatccaaaacagggtCcttcccagagcccagaatga	10	12	0	3	novel		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	KRT78-188	NM_173352	exon9	c.G1453A	p.D485N	CAGGGTCCTTCCC	.	214	38	125	0	.	0	0	0	0	0	T	53233007	C	T	53233007	3	4	33	1	0	0	0	0	1	0	0	0	8512	855	30	3	113	3	KRT78	12	53233007	Missense_Mutation	SNP	C	TCGA-OR-A5KP-01A-11D-A30A-10	26500020	53233007	80618888	78	8046										
AMHR2	269	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	53822782	53822782	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0408163265306122	6	1	0.955010859447719	1.5007313505607	0.808086111840378	0.592074592074592	1	0	tggcatttctccatgaggagCgctggcagaatggtgggtga	16	7	1	3	novel		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	AMHR2-628	NM_020547	exon7	c.C955T	p.R319C	GAGGAGCGCTGGC	.	51	10	48	0	.	0	0	0	0	0	T	53822782	C	T	53822782	3	4	33	1	0	0	0	0	1	0	0	0	573	768	27	1	981	1	AMHR2	12	53822782	Missense_Mutation	SNP	C	TCGA-OR-A5KP-01A-11D-A30A-10	589775	53822782	80029113	79	8047										
LRIG3	121227	broad.mit.edu	37	chr12	59284579	59284579	+	Splice_Site	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0408163265306122	6	1	0.955010859447719	1.5007313505607	0.808086111840378	0.592074592074592	1	0	caacaatcctgtttccagccCtagaattaaaagaaaccaca	4	12	0	2	novel		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	LRIG3-229	NM_153377	exon5	c.384-1G>T	.	CCAGCCCTAGAAT	.	31	3	19	0	.	0	0	0	0	0	A	59284579	C	A	59284579	5	1	33	1	0	0	0	0	0	0	1	0	8973	695	24	3	3040	3	LRIG3	12	59284579	Splice_Site	SNP	C	TCGA-OR-A5KP-01A-11D-A30A-10	5461797	59284579	74567316	80	8048										
LRIG3	121227	hgsc.bcm.edu	37	chr12	59313936	59313936	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0408163265306122	6	1	0.955010859447719	1.5007313505607	0.808086111840378	0.592074592074592	1	0	tccccgcgaccgccgctgtcTgaccggccagcgcgccccag	12	21	1	1	rs61754220	bycluster;byfrequency;by1000genomes	TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	LRIG3-229	NM_153377	exon1	c.A81C	p.S27S	GCTGTCTGACCGG	.	23	10	3	0	T|0.908;G|0.092	0	0	0	0	0	G	59313936	T	G	59313936	2	3	33	1	0	0	0	0	0	0	0	1	8973	1567	55	5		5	LRIG3	12	59313936	Silent	SNP	T	TCGA-OR-A5KP-01A-11D-A30A-10	29357	59313936	74537959	81	8049										
NAV3	89795	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr12	78583826	78583826	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0408163265306122	6	1	0.955010859447719	1.5007313505607	0.808086111840378	0.592074592074592	1	0	tgattcctaaaccaattaccCaaaggtactttaacttgttg	5	9	0	1	novel		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	NAV3-279	NM_014903	exon33	c.C6052A	p.Q2018K	ATTACCCAAAGGT	.	99	8	66	0	.	0	0	0	0	0	A	78583826	C	A	78583826	3	1	33	1	0	0	0	0	1	0	0	0	10213	595	21	3	6182	3	NAV3	12	78583826	Missense_Mutation	SNP	C	TCGA-OR-A5KP-01A-11D-A30A-10	19269890	78583826	55268069	82	8050										
NEDD1	121441	broad.mit.edu;bcgsc.ca	37	chr12	97338562	97338562	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0408163265306122	6	1	0.955010859447719	1.5007313505607	0.808086111840378	0.592074592074592	1	0	tgaacccccaatcaatggatCctcaactccaagtaagtaca	5	13	2	1	rs144294186		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	NEDD1-90	NM_001135175	exon12	c.C1664T	p.S555F	ATGGATCCTCAAC	.	206	9	131	0	C|1.000;T|0.000	0	0	0	0	0	T	97338562	C	T	97338562	3	4	33	1	0	0	0	0	1	0	0	0	10338	855	30	3	1710	3	NEDD1	12	97338562	Missense_Mutation	SNP	C	TCGA-OR-A5KP-01A-11D-A30A-10	18754736	97338562	36513333	83	8051										
RNFT2	84900	hgsc.bcm.edu	37	chr12	117187907	117187907	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0408163265306122	6	1	0.955010859447719	1.5007313505607	0.808086111840378	0.592074592074592	1	0	caccgccagccccaccaccaTttccaccatggcggccaccg	7	22	0	0	rs111256849	byfrequency	TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	.	NM_001109903	exon4	c.T345C	p.H115H	CCACCATTTCCAC	.	21	9	1	0	T|0.767;C|0.233	0	0	0	0	0	C	117187907	T	C	117187907	2	2	33	1	0	0	0	0	0	0	0	1	13537	1490	52	4		4	RNFT2	12	117187907	Silent	SNP	T	TCGA-OR-A5KP-01A-11D-A30A-10	19849345	117187907	16663988	84	8052										
ATP6V0A2	23545	hgsc.bcm.edu;broad.mit.edu	37	chr12	124232193	124232196	+	Frame_Shift_Del	DEL	TCTT	TCTT	-													0.0408163265306122	6	1	0.955010859447719	1.5007313505607	0.808086111840378	0.592074592074592	1	0	atcgcctcacttttctaaacTctttcaaaatgaaaatgtcc					novel		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	TCTT	TCTT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	ATP6V0A2-92	NM_012463	exon14	c.1645_1648del	p.549_550del	CTAAACTCTTTCA	.	100	9	86	0	.	0	0	0	0	0	-	124232196	TCTT	-	124232193	7	5	33	1	0	1	0	1	0	0	0	0	1170	1551	54	0	1699	0	ATP6V0A2	12	124232193	Frame_Shift_Del	DEL	TCTT	TCGA-OR-A5KP-01A-11D-A30A-10	7044286	124232193	9619702	85	8053										
RIMBP2	23504	hgsc.bcm.edu	37	chr12	130921471	130921471	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0408163265306122	6	1	0.955010859447719	1.5007313505607	0.808086111840378	0.592074592074592	1	0	accggggtgccctgtggctgTggcaggatgcggctgggtga	20	9	0	1	rs2292663	byfrequency	TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	RIMBP2-142	NM_015347	exon10	c.A1971G	p.P657P	TGGCTGTGGCAGG	.	60	23	0	0	T|0.868;C|0.132	0	0	0	0	0	C	130921471	T	C	130921471	2	2	33	1	0	0	0	0	0	0	0	1	13398	1683	59	4		4	RIMBP2	12	130921471	Silent	SNP	T	TCGA-OR-A5KP-01A-11D-A30A-10	6689278	130921471	2930424	86	8054										
ZMYM2	7750	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr13	20641036	20641036	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0408163265306122	6	1	0.955010859447719	1.5007313505607	0.808086111840378	0.592074592074592	1	0	gataccagtctcatgatgatAgttctgacaattcagaatgc	8	8	3	4	novel		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	ZMYM2-685	NM_001190964	exon21	c.A3178G	p.S1060G	GATGATAGTTCTG	.	59	17	79	1	.	0	0	0	0	0	G	20641036	A	G	20641036	3	3	33	1	0	0	0	0	1	0	0	0	17737	420	15	4	3248	4	ZMYM2	13	20641036	Missense_Mutation	SNP	A	TCGA-OR-A5KP-01A-11D-A30A-10		20641036	94528842	87	8055										
MIPEP	4285	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr13	24304549	24304549	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0408163265306122	6	1	0.955010859447719	1.5007313505607	0.808086111840378	0.592074592074592	1	0	gtcggaaacgagggcacttaCgaagtcatcaacagaaggac	12	9	2	1	novel		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	MIPEP-90	NM_005932	exon19	c.G2080C	p.V694L	CACTTACGAAGTC	.	86	14	76	0	.	0	0	0	0	0	G	24304549	C	G	24304549	3	3	33	1	0	0	0	0	1	0	0	0	9620	536	19	2	65	2	MIPEP	13	24304549	Missense_Mutation	SNP	C	TCGA-OR-A5KP-01A-11D-A30A-10	3663513	24304549	90865329	88	8056										
FOXG1	2290	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr14	29237445	29237445	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0408163265306122	6	1	0.955010859447719	1.5007313505607	0.808086111840378	0.592074592074592	1	0	ctgtccctgcaccacccccgCgccagcagcactttgagtta	8	18	0	1	novel		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	FOXG1-660	NM_005249	exon1	c.C960T	p.R320R	CCCCCGCGCCAGC	.	109	7	34	0	.	0	0	0	0	0	T	29237445	C	T	29237445	2	4	33	1	0	0	0	0	0	0	0	1	6026	755	27	1		1	FOXG1	14	29237445	Silent	SNP	C	TCGA-OR-A5KP-01A-11D-A30A-10		29237445	78112095	89	8057										
PAPLN	89932	broad.mit.edu;bcgsc.ca	37	chr14	73711367	73711367	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0408163265306122	6	1	0.955010859447719	1.5007313505607	0.808086111840378	0.592074592074592	1	0	tgcaggctcccaaggtgaggCggcagagtgacacctgggga	17	10	0	3	novel		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	PAPLN-70	NM_173462	exon3	c.C70A	p.R24R	GTGAGGCGGCAGA	.	120	5	118	0	.	0	0	0	0	0	A	73711367	C	A	73711367	2	1	33	1	0	0	0	0	0	0	0	1	11457	759	27	2		2	PAPLN	14	73711367	Silent	SNP	C	TCGA-OR-A5KP-01A-11D-A30A-10	44473922	73711367	33638173	90	8058										
LGMN	5641	bcgsc.ca	37	chr14	93170993	93170993	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0408163265306122	6	1	0.955010859447719	1.5007313505607	0.808086111840378	0.592074592074592	1	0	tgcattagttacctgtgaagCggatacggcttctcacaaag	10	9	1	1	rs9791	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	LGMN-91	NM_005606	exon13	c.G1251A	p.P417P	GTGAAGCGGATAC	.	216	9	168	0	C|0.681;T|0.319	0	0	0	0	0	T	93170993	C	T	93170993	2	4	33	1	0	0	0	0	0	0	0	1	8778	755	27	1		1	LGMN	14	93170993	Silent	SNP	C	TCGA-OR-A5KP-01A-11D-A30A-10	19459626	93170993	14178547	91	8059										
AHNAK2	113146	broad.mit.edu	37	chr14	105412335	105412335	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0408163265306122	6	1	0.955010859447719	1.5007313505607	0.808086111840378	0.592074592074592	1	0	ggggcagacaccccgaacgaCggcatcttgaacttgggcat	13	12	1	2	rs202104959	byfrequency	TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	AHNAK2-47	NM_138420	exon7	c.G9453A	p.P3151P	GAACGACGGCATC	.	20	6	15	0	C|0.963;T|0.037	0	0	0	0	0	T	105412335	C	T	105412335	2	4	33	1	0	0	0	0	0	0	0	1	415	523	19	1		1	AHNAK2	14	105412335	Silent	SNP	C	TCGA-OR-A5KP-01A-11D-A30A-10	12241342	105412335	1937205	92	8060										
UBE3A	7337	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	25616489	25616489	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0408163265306122	6	1	0.955010859447719	1.5007313505607	0.808086111840378	0.592074592074592	1	0	gaacaaattcagataattagGatctcgagagtatacattgt	8	5	2	2	novel		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	UBE3A-660	NM_000462	exon7	c.C841T	p.P281S	AATTAGGATCTCG	.	77	7	90	0	.	0	0	0	0	0	A	25616489	G	A	25616489	3	1	33	1	0	0	0	0	1	0	0	0	16917	1174	41	3	1818	3	UBE3A	15	25616489	Missense_Mutation	SNP	G	TCGA-OR-A5KP-01A-11D-A30A-10		25616489	76914903	93	8061										
AQR	9716	broad.mit.edu	37	chr15	35176926	35176926	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0408163265306122	6	1	0.955010859447719	1.5007313505607	0.808086111840378	0.592074592074592	1	0	gctgatatactcttcccagcGagacattacctgtagaaaaa	7	10	1	3	novel		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	AQR-135	NM_014691	exon26	c.C2827A	p.R943S	CCCAGCGAGACAT	.	48	3	53	0	.	0	0	0	0	0	T	35176926	G	T	35176926	3	4	33	1	0	0	0	0	1	0	0	0	835	1058	37	2	1670	2	AQR	15	35176926	Missense_Mutation	SNP	G	TCGA-OR-A5KP-01A-11D-A30A-10	9560437	35176926	67354466	94	8062										
CALML4	91860	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	68491886	68491886	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0408163265306122	6	1	0.955010859447719	1.5007313505607	0.808086111840378	0.592074592074592	1	0	caccaccactcacctatcccGtgggtctgcaggtgccgctg	10	17	2	0	rs200702934	byfrequency	TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	CALML4-90	NM_033429	exon3	c.C297T	p.H99H	TATCCCGTGGGTC	.	54	5	46	0	G|0.998;A|0.002	0	0	0	0	0	A	68491886	G	A	68491886	2	1	33	1	0	0	0	0	0	0	0	1	2594	1136	40	1		1	CALML4	15	68491886	Silent	SNP	G	TCGA-OR-A5KP-01A-11D-A30A-10	33314960	68491886	34039506	95	8063										
FBXO22	26263	broad.mit.edu	37	chr15	76225142	76225142	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0408163265306122	6	1	0.955010859447719	1.5007313505607	0.808086111840378	0.592074592074592	1	0	tgatgagaagactgctgaggCtgcgatgcagcgcctcaaag	14	9	1	4	novel		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	FBXO22-658	NM_147188	exon7	c.C911A	p.A304D	CTGAGGCTGCGAT	.	102	9	104	1	.	0	0	0	0	0	A	76225142	C	A	76225142	3	1	33	1	0	0	0	0	1	0	0	0	5753	797	28	3	974	3	FBXO22	15	76225142	Missense_Mutation	SNP	C	TCGA-OR-A5KP-01A-11D-A30A-10	7733256	76225142	26306250	96	8064										
PDIA2	64714	hgsc.bcm.edu	37	chr16	334685	334685	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0408163265306122	6	1	0.955010859447719	1.5007313505607	0.808086111840378	0.592074592074592	1	0	gggacgctgagggcattgccGagtggctgcgacggcgggtg	21	9	0	1	rs200919010		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	PDIA2-91	NM_006849	exon3	c.G433A	p.E145K	ATTGCCGAGTGGC	.	33	17	3	0	.	0	0	0	0	0	A	334685	G	A	334685	3	1	33	1	0	0	0	0	1	0	0	0	11697	1059	37	1	443	1	PDIA2	16	334685	Missense_Mutation	SNP	G	TCGA-OR-A5KP-01A-11D-A30A-10		334685	90020068	97	8065										
PKD1	5310	hgsc.bcm.edu	37	chr16	2156447	2156447	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0408163265306122	6	1	0.955010859447719	1.5007313505607	0.808086111840378	0.592074592074592	1	0	gagggcgtgcacagcgcccaGtgggaagaggcggcaagagc	19	10	0	2	rs2003782	bycluster;byfrequency;by1000genomes	TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	PKD1-91	NM_000296	exon18	c.C7441T	p.L2481L	CGCCCAGTGGGAA	.	31	16	0	0	G|0.793;A|0.207	0	0	0	0	0	A	2156447	G	A	2156447	2	1	33	1	0	0	0	0	0	0	0	1	11992	1020	36	3		3	PKD1	16	2156447	Silent	SNP	G	TCGA-OR-A5KP-01A-11D-A30A-10	1821762	2156447	88198306	98	8066										
LCMT1	51451	broad.mit.edu	37	chr16	25143773	25143773	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0408163265306122	6	1	0.955010859447719	1.5007313505607	0.808086111840378	0.592074592074592	1	0	agcttataaaggcatttctaCggaagacagaatgtcattgt	9	6	2	2	novel		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	LCMT1-22	NM_016309	exon3	c.C256G	p.R86G	TTTCTACGGAAGA	.	111	3	116	0	.	0	0	0	0	0	G	25143773	C	G	25143773	3	3	33	1	0	0	0	0	1	0	0	0	8700	527	19	2	266	2	LCMT1	16	25143773	Missense_Mutation	SNP	C	TCGA-OR-A5KP-01A-11D-A30A-10	22987326	25143773	65210980	99	8067										
SEZ6L2	26470	hgsc.bcm.edu	37	chr16	29908433	29908433	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0408163265306122	6	1	0.955010859447719	1.5007313505607	0.808086111840378	0.592074592074592	1	0	gggtggctagcgtggggtccCgatcagatcctgggacagtg	18	9	1	1	rs11649499	byfrequency	TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	SEZ6L2-92	NM_001243332	exon3	c.G221C	p.R74P	GGGTCCCGATCAG	.	4	4	0	0	C|0.218;G|0.782	0	0	0	0	0	G	29908433	C	G	29908433	3	3	33	1	0	0	0	0	1	0	0	0	14179	652	23	2	2614	2	SEZ6L2	16	29908433	Missense_Mutation	SNP	C	TCGA-OR-A5KP-01A-11D-A30A-10	4764660	29908433	60446320	100	8068										
VPS35	55737	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	46714715	46714715	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.0408163265306122	6	1	0.955010859447719	1.5007313505607	0.808086111840378	0.592074592074592	1	0	ctttcaaaatatccttcctgGactgaggaaatgacttgaca	7	9	1	3	novel		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	VPS35-90	NM_018206	exon5	c.C374G	p.S125C	TTCCTGGACTGAG	.	226	24	215	0	.	0	0	0	0	0	C	46714715	G	C	46714715	3	2	33	1	0	0	0	0	1	0	0	0	17241	1174	41	3	2068	3	VPS35	16	46714715	Missense_Mutation	SNP	G	TCGA-OR-A5KP-01A-11D-A30A-10	16806282	46714715	43640038	101	8069										
IRX3	79191	hgsc.bcm.edu	37	chr16	54318528	54318528	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0408163265306122	6	1	0.955010859447719	1.5007313505607	0.808086111840378	0.592074592074592	1	0	ccagcagggagagcgggtgcAggcgggggccgggcggtggg	25	9	0	1	rs1450355		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	IRX3-90	NM_024336	exon2	c.T1265C	p.L422P	GGGTGCAGGCGGG	.	4	4	0	0	T|0.035;G|0.004	0	0	0	0	0	G	54318528	A	G	54318528	3	3	33	1	0	0	0	0	1	0	0	0	7866	188	7	4	252	4	IRX3	16	54318528	Missense_Mutation	SNP	A	TCGA-OR-A5KP-01A-11D-A30A-10	7603813	54318528	36036225	102	8070										
WWP2	11060	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr16	69874080	69874080	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0408163265306122	6	1	0.955010859447719	1.5007313505607	0.808086111840378	0.592074592074592	1	0	gacggagaacaaaggcagcgTtgtctcaggcggagagctga	16	8	1	3	novel		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	WWP2-658	NM_001270454	exon5	c.T392G	p.V131G	GCAGCGTTGTCTC	.	114	25	112	1	.	0	0	0	0	0	G	69874080	T	G	69874080	3	3	33	1	0	0	0	0	1	0	0	0	17454	1725	60	5	406	5	WWP2	16	69874080	Missense_Mutation	SNP	T	TCGA-OR-A5KP-01A-11D-A30A-10	15555552	69874080	20480673	103	8071										
GSDMA	284110	bcgsc.ca	37	chr17	38121993	38121993	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0408163265306122	6	1	0.955010859447719	1.5007313505607	0.808086111840378	0.592074592074592	1	0	ggccagacagctaaaccctcGaggggacctgacaccacttg	11	14	0	2	rs3894194	byfrequency	TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	GSDMA-90	NM_178171	exon2	c.G53A	p.R18Q	ACCCTCGAGGGGA	.	104	6	91	1	G|0.341;T|0.179	0	0	0	0	0	A	38121993	G	A	38121993	3	1	33	1	0	0	0	0	1	0	0	0	6837	1058	37	1	55	1	GSDMA	17	38121993	Missense_Mutation	SNP	G	TCGA-OR-A5KP-01A-11D-A30A-10		38121993	43073217	104	8072										
KRT27	342574	bcgsc.ca	37	chr17	38936017	38936017	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0408163265306122	6	1	0.955010859447719	1.5007313505607	0.808086111840378	0.592074592074592	1	0	gagggcttcgtactcagctcGcatattgttcagcagaaccg	11	11	2	1	novel		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	KRT27-90	NM_181537	exon4	c.C781A	p.R261R	CAGCTCGCATATT	.	112	5	76	0	.	0	0	0	0	0	T	38936017	G	T	38936017	2	4	33	1	0	0	0	0	0	0	0	1	8485	1095	38	2		2	KRT27	17	38936017	Silent	SNP	G	TCGA-OR-A5KP-01A-11D-A30A-10	814024	38936017	42259193	105	8073										
KRTAP4-7	100132476	hgsc.bcm.edu	37	chr17	39240789	39240803	+	In_Frame_Del	DEL	CGCCCCAGCTGCTGC	CGCCCCAGCTGCTGC	-													0.0408163265306122	6	1	0.955010859447719	1.5007313505607	0.808086111840378	0.592074592074592	1	0	gctgccagcccacctgctgcCgccccagctgctgccgcccc					novel		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	CGCCCCAGCTGCTGC	CGCCCCAGCTGCTGC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	.	NM_033061	exon1	c.331_345del	p.111_115del	TGCTGCCGCCCCA	.	124	0	33	0	.	0	0	0	0	0	-	39240803	CGCCCCAGCTGCTGC	-	39240789	7	5	33	1	0	1	0	1	0	0	0	0	8577	652	23	0	333	0	KRTAP4-7	17	39240789	In_Frame_Del	DEL	CGCCCCAGCTGCTGC	TCGA-OR-A5KP-01A-11D-A30A-10	304772	39240789	41954421	106	8074			2	38		2	2	16	N	CGCCCCAGCTGCTGC_CG	7.122598e-05
KRTAP4-7	100132476	hgsc.bcm.edu	37	chr17	39240804	39240805	+	Missense_Mutation	DNP	CG	CG	AT													0.0408163265306122	6	1	0.955010859447719	1.5007313505607	0.808086111840378	0.592074592074592	1	0	gctgccgccccagctgctgcCgcccctgctgctgcctgcgt					novel		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	CG	CG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	.	NM_033061	exon1	c.G347T	p.R116I	GCTGCCGCCCCTG	.	125	0	37	0	.	0	0	0	0	0	AT	39240805	CG	AT	39240804	3	1	33	1	0	0	0	0	1	0	0	0	8577	652	23	2	348	2	KRTAP4-7	17	39240804	Missense_Mutation	DNP	CG	TCGA-OR-A5KP-01A-11D-A30A-10	15	39240804	41954406	107	8075			2	38		2	2	16	N	CGCCCCAGCTGCTGC_CG	7.122598e-05
C17orf53	78995	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr17	42225398	42225398	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0408163265306122	6	1	0.955010859447719	1.5007313505607	0.808086111840378	0.592074592074592	1	0	agaggctttgggcctgccagActtggacctctgcctccctg	12	14	1	2	novel		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	C17orf53-90	NM_001171251	exon3	c.A227G	p.D76G	TGCCAGACTTGGA	.	56	6	62	0	.	0	0	0	0	0	G	42225398	A	G	42225398	3	3	33	1	0	0	0	0	1	0	0	0	1867	275	10	4	237	4	C17orf53	17	42225398	Missense_Mutation	SNP	A	TCGA-OR-A5KP-01A-11D-A30A-10	2984594	42225398	38969812	108	8076										
ABCC3	8714	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	48741342	48741342	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0408163265306122	6	1	0.955010859447719	1.5007313505607	0.808086111840378	0.592074592074592	1	0	caccaactcagtcaaacgtgCgtccactgtgggggaaattg	11	11	2	0	novel		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	ABCC3-93	NM_003786	exon10	c.C1208T	p.A403V	AACGTGCGTCCAC	.	263	86	254	0	.	0	0	0	0	0	T	48741342	C	T	48741342	3	4	33	1	0	0	0	0	1	0	0	0	54	768	27	1	1246	1	ABCC3	17	48741342	Missense_Mutation	SNP	C	TCGA-OR-A5KP-01A-11D-A30A-10	6515944	48741342	32453868	109	8077										
HEATR6	63897	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	58151224	58151224	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0408163265306122	6	1	0.955010859447719	1.5007313505607	0.808086111840378	0.592074592074592	1	0	gtatatgccaacaggaaatcCaagtgctgttcatcaacaat	7	9	2	0	novel		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	HEATR6-227	NM_022070	exon3	c.G351A	p.L117L	GAAATCCAAGTGC	.	177	75	197	1	.	0	0	0	0	0	T	58151224	C	T	58151224	2	4	33	1	0	0	0	0	0	0	0	1	7054	593	21	3		3	HEATR6	17	58151224	Silent	SNP	C	TCGA-OR-A5KP-01A-11D-A30A-10	9409882	58151224	23043986	110	8078										
TMEM200C	645369	hgsc.bcm.edu	37	chr18	5890571	5890571	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0408163265306122	6	1	0.955010859447719	1.5007313505607	0.808086111840378	0.592074592074592	1	0	ggcggccttggccagagggcTggagtccgggtccgcactcc	17	14	0	1	rs7506026		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	.	NM_001080209	exon1	c.A1492G	p.S498G	GAGGGCTGGAGTC	.	14	8	0	0	T|0.941;C|0.059	0	0	0	0	0	C	5890571	T	C	5890571	3	2	33	1	0	0	0	0	1	0	0	0	16162	1580	55	4	377	4	TMEM200C	18	5890571	Missense_Mutation	SNP	T	TCGA-OR-A5KP-01A-11D-A30A-10		5890571	72186677	111	8079										
ARID3A	1820	hgsc.bcm.edu	37	chr19	929678	929678	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0408163265306122	6	1	0.955010859447719	1.5007313505607	0.808086111840378	0.592074592074592	1	0	gacgaggacagagagcccgaGagtgcccggatgcagcgggc	18	11	0	2	rs3826948		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	ARID3A-90	NM_005224	exon2	c.G150A	p.E50E	GCCCGAGAGTGCC	.	6	6	0	0	T|0.495;C|0.504	0	0	0	0	0	A	929678	G	A	929678	2	1	33	1	0	0	0	0	0	0	0	1	916	933	33	3		3	ARID3A	19	929678	Silent	SNP	G	TCGA-OR-A5KP-01A-11D-A30A-10		929678	58199305	112	8080										
ARID3A	1820	hgsc.bcm.edu	37	chr19	929753	929753	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0408163265306122	6	1	0.955010859447719	1.5007313505607	0.808086111840378	0.592074592074592	1	0	gctgcgggcctgggacacccAgccagccccggcggctctga	15	17	1	1	rs1799595		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	ARID3A-90	NM_005224	exon2	c.A225G	p.P75P	ACACCCAGCCAGC	.	4	4	0	0	A|0.114;G|0.886	0	0	0	0	0	G	929753	A	G	929753	2	3	33	1	0	0	0	0	0	0	0	1	916	175	7	4		4	ARID3A	19	929753	Silent	SNP	A	TCGA-OR-A5KP-01A-11D-A30A-10	75	929753	58199230	113	8081										
FZR1	51343	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	3525978	3525978	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0408163265306122	6	1	0.955010859447719	1.5007313505607	0.808086111840378	0.592074592074592	1	0	agccaactggagcgtgaactTccacaggattaacgtgaggg	13	9	0	2	novel		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	FZR1-227	NM_001136197	exon2	c.T182G	p.F61C	TGAACTTCCACAG	.	121	22	65	0	.	0	0	0	0	0	G	3525978	T	G	3525978	3	3	33	1	0	0	0	0	1	0	0	0	6157	1783	62	5	188	5	FZR1	19	3525978	Missense_Mutation	SNP	T	TCGA-OR-A5KP-01A-11D-A30A-10	2596225	3525978	55603005	114	8082										
ZNF414	84330	hgsc.bcm.edu	37	chr19	8576670	8576670	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0408163265306122	6	1	0.955010859447719	1.5007313505607	0.808086111840378	0.592074592074592	1	0	aagggttccagcagcgggaaCggcaggcccggcgctgatgc	17	12	0	1	rs7175	byfrequency;by2hit2allele;by1000genomes	TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	ZNF414-90	NM_032370	exon5	c.G705A	p.P235P	CGGGAACGGCAGG	.	12	5	4	0	C|0.788;T|0.212	0	0	0	0	0	T	8576670	C	T	8576670	2	4	33	1	0	0	0	0	0	0	0	1	17928	523	19	1		1	ZNF414	19	8576670	Silent	SNP	C	TCGA-OR-A5KP-01A-11D-A30A-10	5050692	8576670	50552313	115	8083										
C19orf12	83636	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	30199201	30199201	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0408163265306122	6	1	0.955010859447719	1.5007313505607	0.808086111840378	0.592074592074592	1	0	ccgcccaccaaacccccgacGaaggccatggcccctgtgac	9	20	0	1	novel		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	C19orf12-204	NM_001031726	exon2	c.C153T	p.F51F	CCCGACGAAGGCC	.	85	15	43	0	.	0	0	0	0	0	A	30199201	G	A	30199201	2	1	33	1	0	0	0	0	0	0	0	1	1915	1049	37	1		1	C19orf12	19	30199201	Silent	SNP	G	TCGA-OR-A5KP-01A-11D-A30A-10	21622531	30199201	28929782	116	8084										
LRP3	4037	hgsc.bcm.edu	37	chr19	33698018	33698018	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0408163265306122	6	1	0.955010859447719	1.5007313505607	0.808086111840378	0.592074592074592	1	0	gctctttcaccggccgcgggCgccccgaggccagatcccac	12	19	2	1	rs11539586		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	LRP3-92	NM_002333	exon7	c.C1850T	p.A617V	CGCGGGCGCCCCG	.	15	10	0	0	T|0.000;G|0.967	0	0	0	0	0	T	33698018	C	T	33698018	3	4	33	1	0	0	0	0	1	0	0	0	8985	768	27	1	1876	1	LRP3	19	33698018	Missense_Mutation	SNP	C	TCGA-OR-A5KP-01A-11D-A30A-10	3498817	33698018	25430965	117	8085										
FBXO17	115290	hgsc.bcm.edu	37	chr19	39440918	39440918	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0408163265306122	6	1	0.955010859447719	1.5007313505607	0.808086111840378	0.592074592074592	1	0	agcgcgtccagggccagggaTgggtccgccggcagccgtcg	18	14	0	0	rs2304117	byfrequency	TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	FBXO17-226	NM_148169	exon2	c.A69G	p.P23P	CAGGGATGGGTCC	.	16	16	0	0	T|0.545;C|0.455	0	0	0	0	0	C	39440918	T	C	39440918	2	2	33	1	0	0	0	0	0	0	0	1	5749	1451	51	4		4	FBXO17	19	39440918	Silent	SNP	T	TCGA-OR-A5KP-01A-11D-A30A-10	5742900	39440918	19688065	118	8086										
SPTBN4	57731	hgsc.bcm.edu	37	chr19	41025758	41025758	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0408163265306122	6	1	0.955010859447719	1.5007313505607	0.808086111840378	0.592074592074592	1	0	ggcggcagcgaggggcccctGcccaacagcctagaagaggc	16	14	0	2	rs201389714		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	SPTBN4-94	NM_020971	exon16	c.G3354A	p.L1118L	GCCCCTGCCCAAC	.	5	5	2	0	G|0.997;A|0.003	0	0	0	0	0	A	41025758	G	A	41025758	2	1	33	1	0	0	0	0	0	0	0	1	15158	1306	46	3		3	SPTBN4	19	41025758	Silent	SNP	G	TCGA-OR-A5KP-01A-11D-A30A-10	1584840	41025758	18103225	119	8087										
NTN5	126147	hgsc.bcm.edu	37	chr19	49164952	49164952	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0408163265306122	6	1	0.955010859447719	1.5007313505607	0.808086111840378	0.592074592074592	1	0	gtctagtgctccggcctgggActgggtgtgggtgcccgcac	17	12	1	0	rs281392	byfrequency	TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	NTN5-136	NM_145807	exon7	c.T1452C	p.S484S	CCTGGGACTGGGT	.	5	4	1	0	A|0.464;G|0.536	0	0	0	0	0	G	49164952	A	G	49164952	2	3	33	1	0	0	0	0	0	0	0	1	10732	272	10	4		4	NTN5	19	49164952	Silent	SNP	A	TCGA-OR-A5KP-01A-11D-A30A-10	8139194	49164952	9964031	120	8088										
SHANK1	50944	broad.mit.edu	37	chr19	51215270	51215270	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0408163265306122	6	1	0.955010859447719	1.5007313505607	0.808086111840378	0.592074592074592	1	0	gccctgttgaacaggagcagCtcgcagcatcgggggtcacc	14	13	1	1	novel		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	SHANK1-153	NM_016148	exon6	c.G894T	p.E298D	GAGCAGCTCGCAG	.	222	9	158	1	.	0	0	0	0	0	A	51215270	C	A	51215270	3	1	33	1	0	0	0	0	1	0	0	0	14299	796	28	3	5663	3	SHANK1	19	51215270	Missense_Mutation	SNP	C	TCGA-OR-A5KP-01A-11D-A30A-10	2050318	51215270	7913713	121	8089										
SIGLEC5	8778	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	52132321	52132321	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0408163265306122	6	1	0.955010859447719	1.5007313505607	0.808086111840378	0.592074592074592	1	0	cctgaagatggtgatggtctGtggagcatctgggataaaaa	14	5	2	3	novel		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	SIGLEC5-92	NM_003830	exon4	c.C709T	p.Q237X	TGGTCTGTGGAGC	.	197	26	114	0	.	0	0	0	0	0	A	52132321	G	A	52132321	4	1	33	1	0	0	0	0	0	1	0	0	14346	1386	48	3	970	3	SIGLEC5	19	52132321	Nonsense_Mutation	SNP	G	TCGA-OR-A5KP-01A-11D-A30A-10	917051	52132321	6996662	122	8090										
ZCCHC3	85364	hgsc.bcm.edu	37	chr20	278515	278515	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0408163265306122	6	1	0.955010859447719	1.5007313505607	0.808086111840378	0.592074592074592	1	0	ccaccggctggccgcggggaTccgaagggccgtcggagaga	18	13	0	1	rs2223665	byfrequency	TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	ZCCHC3-90	NM_033089	exon1	c.T288C	p.D96D	CGGGGATCCGAAG	.	6	5	0	0	T|0.454;C|0.546	0	0	0	0	0	C	278515	T	C	278515	2	2	33	1	0	0	0	0	0	0	0	1	17626	1432	50	4		4	ZCCHC3	20	278515	Silent	SNP	T	TCGA-OR-A5KP-01A-11D-A30A-10		278515	62747005	123	8091										
RSPO4	343637	bcgsc.ca	37	chr20	944746	944746	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0408163265306122	6	1	0.955010859447719	1.5007313505607	0.808086111840378	0.592074592074592	1	0	ggggctccagccgccccaggGacccagttcacactcccctg	11	19	1	0	novel		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	RSPO4-90	NM_001029871	exon4	c.C427A	p.P143T	CCCAGGGACCCAG	.	53	4	60	0	.	0	0	0	0	0	T	944746	G	T	944746	3	4	33	1	0	0	0	0	1	0	0	0	13747	1174	41	3	285	3	RSPO4	20	944746	Missense_Mutation	SNP	G	TCGA-OR-A5KP-01A-11D-A30A-10	666231	944746	62080774	124	8092										
ADAM33	80332	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr20	3652895	3652895	+	Missense_Mutation	SNP	A	A	G													0.0408163265306122	6	1	0.955010859447719	1.5007313505607	0.808086111840378	0.592074592074592	1	0	taggtaaacgtctgggggacAgtgggaggaggtgcccgtgc					novel		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	ADAM33-291	NM_025220	exon14	c.T1483C	p.C495R	GGGGACAGTGGGA	.	166	39	142	0	.	0	0	0	0	0	G	3652895	A	G	3652895	3	3	33	1	0	0	0	0	1	0	0	0	250	188	7	4	994	4	ADAM33	20	3652895	Missense_Mutation	SNP	A	TCGA-OR-A5KP-01A-11D-A30A-10	2708149	3652895	59372625	125	8093	84	2								
ADAM33	80332	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr20	3652900	3652900	+	Missense_Mutation	SNP	G	G	C													0.0408163265306122	6	1	0.955010859447719	1.5007313505607	0.808086111840378	0.592074592074592	1	0	aaacgtctgggggacagtggGaggaggtgcccgtgcaaaac					novel		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	ADAM33-291	NM_025220	exon14	c.C1478G	p.S493C	CAGTGGGAGGAGG	.	168	37	145	0	.	0	0	0	0	0	C	3652900	G	C	3652900	3	2	33	1	0	0	0	0	1	0	0	0	250	1174	41	3	999	3	ADAM33	20	3652900	Missense_Mutation	SNP	G	TCGA-OR-A5KP-01A-11D-A30A-10	5	3652900	59372620	126	8094	84	2								
RBM39	9584	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr20	34300947	34300947	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0408163265306122	6	1	0.955010859447719	1.5007313505607	0.808086111840378	0.592074592074592	1	0	gattcaattcctacctgccaCagcaccaaatgccaaagagc	6	14	1	1	novel		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	RBM39-91	NM_184234	exon12	c.G1168T	p.V390L	CTGCCACAGCACC	.	25	9	29	0	.	0	0	0	0	0	A	34300947	C	A	34300947	3	1	33	1	0	0	0	0	1	0	0	0	13168	478	17	3	448	3	RBM39	20	34300947	Missense_Mutation	SNP	C	TCGA-OR-A5KP-01A-11D-A30A-10	30648047	34300947	28724573	127	8095										
TGM2	7052	broad.mit.edu;bcgsc.ca	37	chr20	36760743	36760743	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0408163265306122	6	1	0.955010859447719	1.5007313505607	0.808086111840378	0.592074592074592	1	0	ttgcccagcctgcccttaccCggatcttgatttctggattc	8	14	2	1	rs150712844		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	TGM2-155	NM_004613	exon11	c.G1775A	p.R592Q	CTTACCCGGATCT	.	91	7	80	1	C|1.000;T|0.000	0	0	0	0	0	T	36760743	C	T	36760743	3	4	33	1	0	0	0	0	1	0	0	0	15867	666	23	1	300	1	TGM2	20	36760743	Missense_Mutation	SNP	C	TCGA-OR-A5KP-01A-11D-A30A-10	2459796	36760743	26264777	128	8096										
MAFB	9935	hgsc.bcm.edu	37	chr20	39317483	39317483	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0408163265306122	6	1	0.955010859447719	1.5007313505607	0.808086111840378	0.592074592074592	1	0	ctggccccatgctcagctccGcggccatcgctgaagcgagg	13	16	1	1	novel		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	MAFB-846	NM_005461	exon1	c.C8A	p.A3E	AGCTCCGCGGCCA	.	66	4	11	0	.	0	0	0	0	0	T	39317483	G	T	39317483	3	4	33	1	0	0	0	0	1	0	0	0	9186	1087	38	2	967	2	MAFB	20	39317483	Missense_Mutation	SNP	G	TCGA-OR-A5KP-01A-11D-A30A-10	2556740	39317483	23708037	129	8097										
DNTTIP1	116092	hgsc.bcm.edu	37	chr20	44420682	44420682	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0408163265306122	6	1	0.955010859447719	1.5007313505607	0.808086111840378	0.592074592074592	1	0	gccgagcagccgcggggaccTagcggggccgagaggggcgg	22	12	0	1	rs2664591	byfrequency	TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	DNTTIP1-91	NM_052951	exon1	c.T39C	p.P13P	GGGACCTAGCGGG	.	7	7	0	0	T|0.311;C|0.689	0	0	0	0	0	C	44420682	T	C	44420682	2	2	33	1	0	0	0	0	0	0	0	1	4692	1509	53	4		4	DNTTIP1	20	44420682	Silent	SNP	T	TCGA-OR-A5KP-01A-11D-A30A-10	5103199	44420682	18604838	130	8098										
ZMYND8	23613	ucsc.edu	37	chr20	45867852	45867852	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0408163265306122	6	1	0.955010859447719	1.5007313505607	0.808086111840378	0.592074592074592	1	0	ccgggggagaatggctgcccAccgtcgtggatggtggagtt	18	9	0	1	rs2275801	byfrequency	TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	ZMYND8-252	NM_183047	exon15	c.T2315C	p.V772A	CTGCCCACCGTCG	.	51	15	16	3	A|0.741;C|0.002	0	0	0	0	0	G	45867852	A	G	45867852	3	3	33	1	0	0	0	0	1	0	0	0	17748	159	6	4	1287	4	ZMYND8	20	45867852	Missense_Mutation	SNP	A	TCGA-OR-A5KP-01A-11D-A30A-10	1447170	45867852	17157668	131	8099										
ZBP1	81030	broad.mit.edu	37	chr20	56188152	56188152	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0408163265306122	6	1	0.955010859447719	1.5007313505607	0.808086111840378	0.592074592074592	1	0	ctccccatccctaccctttgCccccacccagaggatccggt	6	21	0	1	novel		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	ZBP1-228	NM_001160419	exon5	c.G737T	p.G246V	CCTTTGCCCCCAC	.	22	4	28	0	.	0	0	0	0	0	A	56188152	C	A	56188152	3	1	33	1	0	0	0	0	1	0	0	0	17558	739	26	3	645	3	ZBP1	20	56188152	Missense_Mutation	SNP	C	TCGA-OR-A5KP-01A-11D-A30A-10	10320300	56188152	6837368	132	8100										
LZTR1	8216	broad.mit.edu	37	chr22	21343966	21344002	+	In_Frame_Del	DEL	GAGGAGGTGAGGGGCGTGGGGAGCCAGGGCGCAGGTA	GAGGAGGTGAGGGGCGTGGGGAGCCAGGGCGCAGGTA	-													0.0408163265306122	6	1	0.955010859447719	1.5007313505607	0.808086111840378	0.592074592074592	1	0	accgagagctcacctgctggGaggaggtgaggggcgtgggg					novel		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	LZTR1-280	NM_006767	exon7	c.646_651del	p.216_217del	TGCTGGGAGGAGG	.	36	7	37	0	.	0	0	0	0	0	-	21344002	GAGGAGGTGAGGGGCGTGGGGAGCCAGGGCGCAGGTA	-	21343966	7	5	33	1	0	1	0	1	0	0	0	0	9165	1175	41	0	672	0	LZTR1	22	21343966	In_Frame_Del	DEL	GAGGAGGTGAGGGGCGTGGGGAGCCAGGGCGCAGGTA	TCGA-OR-A5KP-01A-11D-A30A-10		21343966	29960600	133	8101										
HIC2	23119	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr22	21800327	21800327	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0408163265306122	6	1	0.955010859447719	1.5007313505607	0.808086111840378	0.592074592074592	1	0	aatggcatcctggctagtggGgctggccctagcgggcccta	15	12	0	0	novel		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	HIC2-703	NM_015094	exon3	c.G1143A	p.G381G	TAGTGGGGCTGGC	.	19	5	21	0	.	0	0	0	0	0	A	21800327	G	A	21800327	2	1	33	1	0	0	0	0	0	0	0	1	7123	1219	43	3		3	HIC2	22	21800327	Silent	SNP	G	TCGA-OR-A5KP-01A-11D-A30A-10	456361	21800327	29504239	134	8102										
CABIN1	23523	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr22	24487724	24487724	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0408163265306122	6	1	0.955010859447719	1.5007313505607	0.808086111840378	0.592074592074592	1	0	gcaggctggccactacctgcAcgaggaggctgcccgctacc	13	16	0	0	novel		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	CABIN1-94	NM_001199281	exon24	c.A3713G	p.H1238R	ACCTGCACGAGGA	.	195	38	211	0	.	0	0	0	0	0	G	24487724	A	G	24487724	3	3	33	1	0	0	0	0	1	0	0	0	2534	159	6	4	3803	4	CABIN1	22	24487724	Missense_Mutation	SNP	A	TCGA-OR-A5KP-01A-11D-A30A-10	2687397	24487724	26816842	135	8103										
SEZ6L	23544	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr22	26707835	26707835	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0408163265306122	6	1	0.955010859447719	1.5007313505607	0.808086111840378	0.592074592074592	1	0	ctatagtggagttcacctgcGaccccggccactccctggag	11	15	1	0	novel		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	SEZ6L-95	NM_021115	exon8	c.G1783A	p.D595N	ACCTGCGACCCCG	.	118	33	172	0	.	0	0	0	0	0	A	26707835	G	A	26707835	3	1	33	1	0	0	0	0	1	0	0	0	14178	1058	37	1	1813	1	SEZ6L	22	26707835	Missense_Mutation	SNP	G	TCGA-OR-A5KP-01A-11D-A30A-10	2220111	26707835	24596731	136	8104										
NEFH	4744	ucsc.edu	37	chr22	29885594	29885594	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0408163265306122	6	1	0.955010859447719	1.5007313505607	0.808086111840378	0.592074592074592	1	0	cctgagaaggccaagtccccAgagaaggaagaggccaagtc	13	11	0	3	rs79235463	byfrequency	TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	NEFH-90	NM_021076	exon4	c.A1965T	p.P655P	GTCCCCAGAGAAG	.	200	60	235	1	A|0.500;T|0.500	0	0	0	0	0	T	29885594	A	T	29885594	2	4	33	1	0	0	0	0	0	0	0	1	10343	175	7	5		5	NEFH	22	29885594	Silent	SNP	A	TCGA-OR-A5KP-01A-11D-A30A-10	3177759	29885594	21418972	137	8105										
NEFH	4744	broad.mit.edu	37	chr22	29885622	29885623	+	In_Frame_Ins	INS	-	-	AGGAAG													0.0408163265306122	6	1	0.955010859447719	1.5007313505607	0.808086111840378	0.592074592074592	1	0	agaggccaagtcccctgagaINSaggccaagtccccagtgaag					novel		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	NEFH-90	NM_021076	exon4	c.1993_1994insAGGAAG	p.K665delinsKEE	CCTGAGAAGGCCA	.	258	9	313	0	.	0	0	0	0	0	AGGAAG	29885623	-	AGGAAG	29885622	7	5	33	1	0	1	1	0	0	0	0	0	10343	247	9	0	2007	0	NEFH	22	29885622	In_Frame_Ins	INS	-	TCGA-OR-A5KP-01A-11D-A30A-10	28	29885622	21418944	138	8106										
TOM1	10043	ucsc.edu	37	chr22	35742925	35742925	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0408163265306122	6	1	0.955010859447719	1.5007313505607	0.808086111840378	0.592074592074592	1	0	ttccttctaccttcccagggTaatgatgcggaagagcctaa	9	11	1	2	rs743810	byfrequency	TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	TOM1-91	NM_001135732	exon14	c.T1287G	p.G429G	CCAGGGTAATGAT	.	48	5	65	3	T|0.655;G|0.345	0	0	0	0	0	G	35742925	T	G	35742925	2	3	33	1	0	0	0	0	0	0	0	1	16388	1625	57	5		5	TOM1	22	35742925	Silent	SNP	T	TCGA-OR-A5KP-01A-11D-A30A-10	5857303	35742925	15561641	139	8107										
CARD10	29775	hgsc.bcm.edu	37	chr22	37915145	37915145	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0408163265306122	6	1	0.955010859447719	1.5007313505607	0.808086111840378	0.592074592074592	1	0	cacagcgcgtcctcctccgcCtcagaccccgagccggcccc	9	23	1	1	rs79861380		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	CARD10-662	NM_014550	exon1	c.G63A	p.E21E	CTCCGCCTCAGAC	.	42	6	4	0	C|0.935;T|0.065	0	0	0	0	0	T	37915145	C	T	37915145	2	4	33	1	0	0	0	0	0	0	0	1	2650	680	24	3		3	CARD10	22	37915145	Silent	SNP	C	TCGA-OR-A5KP-01A-11D-A30A-10	2172220	37915145	13389421	140	8108										
TRIOBP	11078	hgsc.bcm.edu	37	chr22	38122462	38122462	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0408163265306122	6	1	0.955010859447719	1.5007313505607	0.808086111840378	0.592074592074592	1	0	cagcagcgggggccgcacccAcagccctggccgtgcagagg	16	16	0	1	rs739138	byfrequency	TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	TRIOBP-136	NM_001039141	exon7	c.A3899G	p.H1300R	GCACCCACAGCCC	.	9	9	0	0	A|0.354;G|0.646	0	0	0	0	0	G	38122462	A	G	38122462	3	3	33	1	0	0	0	0	1	0	0	0	16591	159	6	4	3917	4	TRIOBP	22	38122462	Missense_Mutation	SNP	A	TCGA-OR-A5KP-01A-11D-A30A-10	207317	38122462	13182104	141	8109										
PANX2	56666	broad.mit.edu	37	chr22	50617594	50617595	+	Frame_Shift_Ins	INS	-	-	C													0.0408163265306122	6	1	0.955010859447719	1.5007313505607	0.808086111840378	0.592074592074592	1	0	cgggaggaggaggacgggggINScccccgcctgccgcaggacg					novel		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	PANX2-131	NM_052839	exon3	c.1922_1923insC	p.G641fs	ACGGGGGCCCCCG	.	174	13	82	0	.	0	0	0	0	0	C	50617595	-	C	50617594	7	5	33	1	0	1	1	0	0	0	0	0	11450	1203	42	0	1932	0	PANX2	22	50617594	Frame_Shift_Ins	INS	-	TCGA-OR-A5KP-01A-11D-A30A-10	12495132	50617594	686972	142	8110										
SAT1	6303	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	23803894	23803894	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0408163265306122	6	1	0.955010859447719	1.5007313505607	0.808086111840378	0.592074592074592	1	0	ctataaaagaagaggtgcttCtgatctgtccagtgaagagg	12	6	2	5	novel		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	SAT1-554	NM_002970	exon6	c.C437T	p.S146F	GTGCTTCTGATCT	.	301	63	332	0	.	0	0	0	0	0	T	23803894	C	T	23803894	3	4	33	1	0	0	0	0	1	0	0	0	13886	913	32	3	459	3	SAT1	23	23803894	Missense_Mutation	SNP	C	TCGA-OR-A5KP-01A-11D-A30A-10		23803894	131466666	143	8111										
ZDHHC15	158866	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	74649034	74649034	+	Splice_Site	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0408163265306122	6	1	0.955010859447719	1.5007313505607	0.808086111840378	0.592074592074592	1	0	atccaatgcagttattaaccCtaaaaaaaaagaaaaactaa	3	7	0	1	novel		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	ZDHHC15-132	NM_001146256	exon7	c.456-1G>C	.	TTAACCCTAAAAA	.	201	31	187	0	.	0	0	0	0	0	G	74649034	C	G	74649034	5	3	33	1	0	0	0	0	0	0	1	0	17642	695	24	3	551	3	ZDHHC15	23	74649034	Splice_Site	SNP	C	TCGA-OR-A5KP-01A-11D-A30A-10	50845140	74649034	80621526	144	8112										
CENPI	2491	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	100400095	100400095	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0408163265306122	6	1	0.955010859447719	1.5007313505607	0.808086111840378	0.592074592074592	1	0	atgaactctgtgtctaaactGatccactatgtagggtggct	10	8	2	2	novel		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	CENPI-130	NM_006733	exon16	c.G1608A	p.L536L	TAAACTGATCCAC	.	98	25	141	0	.	0	0	0	0	0	A	100400095	G	A	100400095	2	1	33	1	0	0	0	0	0	0	0	1	3239	1277	45	3		3	CENPI	23	100400095	Silent	SNP	G	TCGA-OR-A5KP-01A-11D-A30A-10	25751061	100400095	54870465	145	8113										
TAF7L	54457	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	100542523	100542523	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0408163265306122	6	1	0.955010859447719	1.5007313505607	0.808086111840378	0.592074592074592	1	0	tcaggaacttcatcctggctTtcactcatgtcttgattttg	7	10	5	1	novel		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	TAF7L-130	NM_024885	exon2	c.A267C	p.E89D	CTGGCTTTCACTC	.	422	77	439	2	.	0	0	0	0	0	G	100542523	T	G	100542523	3	3	33	1	0	0	0	0	1	0	0	0	15570	1838	64	5	1169	5	TAF7L	23	100542523	Missense_Mutation	SNP	T	TCGA-OR-A5KP-01A-11D-A30A-10	142428	100542523	54728037	146	8114										
NRK	203447	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	105142618	105142618	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0408163265306122	6	1	0.955010859447719	1.5007313505607	0.808086111840378	0.592074592074592	1	0	aggtgagcagaactaatggaAgaaggaatagtttcattggg	14	3	1	3	novel		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	NRK-630	NM_198465	exon8	c.A622G	p.R208G	AATGGAAGAAGGA	.	131	28	103	0	.	0	0	0	0	0	G	105142618	A	G	105142618	3	3	33	1	0	0	0	0	1	0	0	0	10684	64	3	4	652	4	NRK	23	105142618	Missense_Mutation	SNP	A	TCGA-OR-A5KP-01A-11D-A30A-10	4600095	105142618	50127942	147	8115										
SAGE1	55511	broad.mit.edu;ucsc.edu	37	chrX	134994108	134994108	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0408163265306122	6	1	0.955010859447719	1.5007313505607	0.808086111840378	0.592074592074592	1	0	aaagaagttcgaaggtttggGcaaagtaagtactgcaagaa	12	4	0	2	novel		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	SAGE1-133	NM_018666	exon18	c.G2517A	p.G839G	GTTTGGGCAAAGT	.	66	6	62	1	.	0	0	0	0	0	A	134994108	G	A	134994108	2	1	33	1	0	0	0	0	0	0	0	1	13844	1190	42	3		3	SAGE1	23	134994108	Silent	SNP	G	TCGA-OR-A5KP-01A-11D-A30A-10	29851490	134994108	20276452	148	8116										
MMEL1	79258	bcgsc.ca	37	chr1	2541269	2541269	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	7	0.929330005145667	1.21974465024276	1.66781411359725	1.10138667879063	0.286130536130536	1	0	atgttctggaggatcctggcAgctgctcgtccccatggcgt	13	12	1	0	rs10797440	byfrequency	TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	MMEL1-90	NM_033467	exon5	c.T294C	p.A98A	CCTGGCAGCTGCT	.	133	6	168	2	A|0.542;G|0.458	0	0	0	0	0	G	2541269	A	G	2541269	2	3	34	1	0	0	0	0	0	0	0	1	9674	202	7	4		4	MMEL1	1	2541269	Silent	SNP	A	TCGA-OR-A5KS-01A-11D-A30A-10		2541269	246709352	1	8117										
TNFRSF25	8718	hgsc.bcm.edu	37	chr1	6521701	6521701	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	7	0.929330005145667	1.21974465024276	1.66781411359725	1.10138667879063	0.286130536130536	1	0	agccccagcgtgcgcacgaaCtccttccagcgccgcgctgg	12	18	0	0	rs149595085	bycluster;byfrequency;by1000genomes	TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	TNFRSF25-714	NM_148965	exon10	c.G1074A	p.E358E	CACGAACTCCTTC	.	37	35	0	0	C|0.999;T|0.001	0	0	0	0	0	T	6521701	C	T	6521701	2	4	34	1	0	0	0	0	0	0	0	1	16333	564	20	3		3	TNFRSF25	1	6521701	Silent	SNP	C	TCGA-OR-A5KS-01A-11D-A30A-10	3980432	6521701	242728920	2	8118										
CROCC	9696	hgsc.bcm.edu	37	chr1	17266514	17266514	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	7	0.929330005145667	1.21974465024276	1.66781411359725	1.10138667879063	0.286130536130536	1	0	cgcctgcgggacaagaccgaCggcgccatgcaggcccacga	14	16	0	1	rs141271666	byfrequency	TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	CROCC-137	NM_014675	exon13	c.C1734T	p.D578D	GACCGACGGCGCC	.	48	4	1	0	C|0.995;T|0.005	0	0	0	0	0	T	17266514	C	T	17266514	2	4	34	1	0	0	0	0	0	0	0	1	3899	535	19	1		1	CROCC	1	17266514	Silent	SNP	C	TCGA-OR-A5KS-01A-11D-A30A-10	10744813	17266514	231984107	3	8119										
RPA2	6118	broad.mit.edu;bcgsc.ca	37	chr1	28240630	28240630	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	7	0.929330005145667	1.21974465024276	1.66781411359725	1.10138667879063	0.286130536130536	1	0	aaagccccccggggactgcgTgtagccgccggctcccccgt	13	18	0	0	novel		TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	RPA2-228	NM_002946	exon2	c.A61C	p.T21P	ACTGCGTGTAGCC	.	94	5	141	1	.	0	0	0	0	0	G	28240630	T	G	28240630	3	3	34	1	0	0	0	0	1	0	0	0	13572	1696	59	5	783	5	RPA2	1	28240630	Missense_Mutation	SNP	T	TCGA-OR-A5KS-01A-11D-A30A-10	10974116	28240630	221009991	4	8120										
DMAP1	55929	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr1	44684101	44684101	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	7	0.929330005145667	1.21974465024276	1.66781411359725	1.10138667879063	0.286130536130536	1	0	ccgccgctttgacctgcgttTtgttgttatccatgaccggt	10	12	0	2	novel		TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	DMAP1-226	NM_001034024	exon5	c.T512G	p.F171C	TGCGTTTTGTTGT	.	243	220	238	2	.	0	0	0	0	0	G	44684101	T	G	44684101	3	3	34	1	0	0	0	0	1	0	0	0	4587	1841	64	5	526	5	DMAP1	1	44684101	Missense_Mutation	SNP	T	TCGA-OR-A5KS-01A-11D-A30A-10	16443471	44684101	204566520	5	8121										
TCTEX1D4	343521	hgsc.bcm.edu	37	chr1	45271828	45271828	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	7	0.929330005145667	1.21974465024276	1.66781411359725	1.10138667879063	0.286130536130536	1	0	ggccccagcaccacactgcaTaccagcttgtagcgtggcgg	12	15	0	0	rs17885815	byfrequency	TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	TCTEX1D4-91	NM_001013632	exon2	c.A513G	p.V171V	ACTGCATACCAGC	.	4	4	0	0	T|0.859;C|0.141	0	0	0	0	0	C	45271828	T	C	45271828	2	2	34	1	0	0	0	0	0	0	0	1	15758	1393	49	4		4	TCTEX1D4	1	45271828	Silent	SNP	T	TCGA-OR-A5KS-01A-11D-A30A-10	587727	45271828	203978793	6	8122										
RAD54L	8438	bcgsc.ca	37	chr1	46743900	46743900	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	7	0.929330005145667	1.21974465024276	1.66781411359725	1.10138667879063	0.286130536130536	1	0	tgggatgctgcctccactgcCatcaccttcgtcttccacca	7	17	2	0	rs1048771	byfrequency	TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	RAD54L-229	NM_003579	exon18	c.C2190T	p.A730A	CACTGCCATCACC	.	119	5	155	1	C|0.877;T|0.123	0	0	0	0	0	T	46743900	C	T	46743900	2	4	34	1	0	0	0	0	0	0	0	1	13028	581	21	3		3	RAD54L	1	46743900	Silent	SNP	C	TCGA-OR-A5KS-01A-11D-A30A-10	1472072	46743900	202506721	7	8123										
INADL	10207	bcgsc.ca	37	chr1	62261168	62261168	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	7	0.929330005145667	1.21974465024276	1.66781411359725	1.10138667879063	0.286130536130536	1	0	cagggatttatgtgaaaagtAtaatacctggcagtgctgcg	12	6	0	1	rs7516332	byfrequency	TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	INADL-94	NM_176877	exon10	c.A1198G	p.I400V	AAAAGTATAATAC	.	76	4	130	0	A|0.589;G|0.411	0	0	0	0	0	G	62261168	A	G	62261168	3	3	34	1	0	0	0	0	1	0	0	0	7752	449	16	4	1232	4	INADL	1	62261168	Missense_Mutation	SNP	A	TCGA-OR-A5KS-01A-11D-A30A-10	15517268	62261168	186989453	8	8124										
GBP2	2634	hgsc.bcm.edu;broad.mit.edu	37	chr1	89586906	89586912	+	Frame_Shift_Del	DEL	TCCAGAT	TCCAGAT	-													0.0526315789473684	7	0.929330005145667	1.21974465024276	1.66781411359725	1.10138667879063	0.286130536130536	1	0	gggatgaggcacacaccacaTccagattcccttggtgtgag					novel		TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	TCCAGAT	TCCAGAT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	GBP2-91	NM_004120	exon3	c.232_238del	p.78_80del	ACCACATCCAGAT	.	87	11	61	0	.	0	0	0	0	0	-	89586912	TCCAGAT	-	89586906	7	5	34	1	0	1	0	1	0	0	0	0	6294	1435	50	0	1573	0	GBP2	1	89586906	Frame_Shift_Del	DEL	TCCAGAT	TCGA-OR-A5KS-01A-11D-A30A-10	27325738	89586906	159663715	9	8125										
KPRP	448834	broad.mit.edu	37	chr1	152733496	152733496	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	7	0.929330005145667	1.21974465024276	1.66781411359725	1.10138667879063	0.286130536130536	1	0	agccttgtccacgaccagagCcaattcccctgccggcgccc	9	19	0	1	novel		TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	KPRP-95	NM_001025231	exon2	c.C1432A	p.P478T	CCAGAGCCAATTC	.	35	4	14	0	.	0	0	0	0	0	A	152733496	C	A	152733496	3	1	34	1	0	0	0	0	1	0	0	0	8457	739	26	3	1434	3	KPRP	1	152733496	Missense_Mutation	SNP	C	TCGA-OR-A5KS-01A-11D-A30A-10	63146590	152733496	96517125	10	8126										
KCNN3	3782	broad.mit.edu	37	chr1	154842199	154842200	+	In_Frame_Ins	INS	-	-	GCTGCTGCT													0.0526315789473684	7	0.929330005145667	1.21974465024276	1.66781411359725	1.10138667879063	0.286130536130536	1	0	ctgagacaggggatgcggtgINSgctgctgctgctgctgctgc					rs3831942	alternate_allele	TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	KCNN3-91	NM_001204087	exon1	c.242_243insAGCAGCAGC	p.P81delinsQQQP	TGCGGTGGCTGCT	.	116	40	28	0	.	0	0	0	0	0	GCTGCTGCT	154842200	-	GCTGCTGCT	154842199	7	5	34	1	0	1	1	0	0	0	0	0	8101	1348	47	0	2007	0	KCNN3	1	154842199	In_Frame_Ins	INS	-	TCGA-OR-A5KS-01A-11D-A30A-10	2108703	154842199	94408422	11	8127										
CACNA1E	777	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	181727162	181727162	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	7	0.929330005145667	1.21974465024276	1.66781411359725	1.10138667879063	0.286130536130536	1	0	cagacacaccttccagtaccGcgtgtggcactttgtggtgt	11	12	0	1	novel		TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	CACNA1E-95	NM_000721	exon31	c.G4409A	p.R1470H	AGTACCGCGTGTG	.	163	135	132	1	.	0	0	0	0	0	A	181727162	G	A	181727162	3	1	34	1	0	0	0	0	1	0	0	0	2548	1087	38	1	4531	1	CACNA1E	1	181727162	Missense_Mutation	SNP	G	TCGA-OR-A5KS-01A-11D-A30A-10	26884963	181727162	67523459	12	8128										
JMJD4	65094	hgsc.bcm.edu	37	chr1	227923081	227923081	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	7	0.929330005145667	1.21974465024276	1.66781411359725	1.10138667879063	0.286130536130536	1	0	gggcgccgcgtttctgccccGccagcgcctggggctccggg	17	17	1	0	rs7419238		TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	JMJD4-226	NM_023007	exon1	c.C32T	p.A11V	TGCCCCGCCAGCG	.	5	5	0	0	G|0.002;A|0.998	0	0	0	0	0	A	227923081	G	A	227923081	3	1	34	1	0	0	0	0	1	0	0	0	7972	1087	38	1	1383	1	JMJD4	1	227923081	Missense_Mutation	SNP	G	TCGA-OR-A5KS-01A-11D-A30A-10	46195919	227923081	21327540	13	8129										
RYR2	6262	broad.mit.edu	37	chr1	237754020	237754020	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	7	0.929330005145667	1.21974465024276	1.66781411359725	1.10138667879063	0.286130536130536	1	0	tttggttctcagaacagcaaCactgatatcatgttttatcg	7	8	2	2	novel		TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	RYR2-158	NM_001035	exon31	c.C3888T	p.N1296N	CAGCAACACTGAT	.	78	4	79	0	.	0	0	0	0	0	T	237754020	C	T	237754020	2	4	34	1	0	0	0	0	0	0	0	1	13804	477	17	3		3	RYR2	1	237754020	Silent	SNP	C	TCGA-OR-A5KS-01A-11D-A30A-10	9830939	237754020	11496601	14	8130										
FMN2	56776	mdanderson.org	37	chr1	240371151	240371151	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	7	0.929330005145667	1.21974465024276	1.66781411359725	1.10138667879063	0.286130536130536	1	0	ggcataccccctcctcccccTcttcccggagcgggcatacc	8	21	1	0	rs71646892	byfrequency	TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	FMN2-145	NM_020066	exon5	c.T3039A	p.P1013P	TCCCCCTCTTCCC	.	26	8	28	2	T|0.962;A|0.038	0	0	0	0	0	A	240371151	T	A	240371151	2	1	34	1	0	0	0	0	0	0	0	1	5969	1538	54	5		5	FMN2	1	240371151	Silent	SNP	T	TCGA-OR-A5KS-01A-11D-A30A-10	2617131	240371151	8879470	15	8131										
NLRP3	114548	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	247587530	247587530	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0526315789473684	7	0.929330005145667	1.21974465024276	1.66781411359725	1.10138667879063	0.286130536130536	1	0	tctgttctatatccactgtcGagaggtgagccttgtgacac	10	10	2	3	rs180177443	alternate_allele	TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	NLRP3-674	NM_183395	exon3	c.G785A	p.R262Q	ACTGTCGAGAGGT	.	90	16	106	0	.	0	0	0	0	0	A	247587530	G	A	247587530	3	1	34	1	0	0	0	0	1	0	0	0	10507	1058	37	1	795	1	NLRP3	1	247587530	Missense_Mutation	SNP	G	TCGA-OR-A5KS-01A-11D-A30A-10	7216379	247587530	1663091	16	8132										
OR2M3	127062	bcgsc.ca	37	chr1	248366792	248366792	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	7	0.929330005145667	1.21974465024276	1.66781411359725	1.10138667879063	0.286130536130536	1	0	ctcatgagccctaaaatttgTggacttatgactgccttttc	7	10	1	2	rs12562957	byfrequency	TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	OR2M3-70	NM_001004689	exon1	c.T423C	p.C141C	AATTTGTGGACTT	.	283	8	272	1	T|0.828;C|0.172	0	0	0	0	0	C	248366792	T	C	248366792	2	2	34	1	0	0	0	0	0	0	0	1	11040	1702	59	4		4	OR2M3	1	248366792	Silent	SNP	T	TCGA-OR-A5KS-01A-11D-A30A-10	779262	248366792	883829	17	8133										
ANKRD36B	57730	bcgsc.ca	37	chr2	98129815	98129815	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	7	0.929330005145667	1.21974465024276	1.66781411359725	1.10138667879063	0.286130536130536	1	0	ttcttttctttttttcttgcTgtatggcaaatctgtaaata	5	6	4	0	novel		TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	.	NM_025190	exon38	c.A2633C	p.Q878P	TCTTGCTGTATGG	.	249	27	238	6	.	0	0	0	0	0	G	98129815	T	G	98129815	3	3	34	1	0	0	0	0	1	0	0	0	666	1580	55	5	1452	5	ANKRD36B	2	98129815	Missense_Mutation	SNP	T	TCGA-OR-A5KS-01A-11D-A30A-10		98129815	145069558	18	8134										
RGPD4	285190	broad.mit.edu	37	chr2	108475928	108475928	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	7	0.929330005145667	1.21974465024276	1.66781411359725	1.10138667879063	0.286130536130536	1	0	atcagccgttatgcctgcccCttcctgtatgtaaacagctt	7	13	1	0	rs2912841		TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	RGPD4-2	NM_182588	exon11	c.C1552T	p.L518F	CTGCCCCTTCCTG	.	187	6	256	0	.	0	0	0	0	0	T	108475928	C	T	108475928	3	4	34	1	0	0	0	0	1	0	0	0	13323	681	24	3	1594	3	RGPD4	2	108475928	Missense_Mutation	SNP	C	TCGA-OR-A5KS-01A-11D-A30A-10	10346113	108475928	134723445	19	8135										
CLK1	1195	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	201726549	201726549	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0526315789473684	7	0.929330005145667	1.21974465024276	1.66781411359725	1.10138667879063	0.286130536130536	1	0	ataatcccaatccttgtcatCccaatcaggacagtaagttc	5	12	2	0	novel		TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	CLK1-784	NM_001162407	exon2	c.G163A	p.D55N	TGTCATCCCAATC	.	177	63	112	0	.	0	0	0	0	0	T	201726549	C	T	201726549	3	4	34	1	0	0	0	0	1	0	0	0	3542	855	30	3	1465	3	CLK1	2	201726549	Missense_Mutation	SNP	C	TCGA-OR-A5KS-01A-11D-A30A-10	93250621	201726549	41472824	20	8136										
COL6A3	1293	bcgsc.ca	37	chr2	238243464	238243464	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	7	0.929330005145667	1.21974465024276	1.66781411359725	1.10138667879063	0.286130536130536	1	0	ataaggaccggggggctcagCcctctcccagtggagtttgg	15	11	2	0	rs2270669	byfrequency	TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	COL6A3-526	NM_004369	exon41	c.G9034C	p.A3012P	GCTCAGCCCTCTC	.	190	7	176	1	C|0.334;G|0.666	0	0	0	0	0	G	238243464	C	G	238243464	3	3	34	1	0	0	0	0	1	0	0	0	3707	739	26	3	515	3	COL6A3	2	238243464	Missense_Mutation	SNP	C	TCGA-OR-A5KS-01A-11D-A30A-10	36516915	238243464	4955909	21	8137										
COL6A3	1293	bcgsc.ca	37	chr2	238249630	238249630	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	7	0.929330005145667	1.21974465024276	1.66781411359725	1.10138667879063	0.286130536130536	1	0	tccagttgtctgaccaggtaCgctatgtacttcttcatctc	7	12	4	1	rs4433949	byfrequency	TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	COL6A3-526	NM_004369	exon38	c.G7929A	p.A2643A	CAGGTACGCTATG	.	187	12	165	1	C|0.625;T|0.375	0	0	0	0	0	T	238249630	C	T	238249630	2	4	34	1	0	0	0	0	0	0	0	1	3707	523	19	1		1	COL6A3	2	238249630	Silent	SNP	C	TCGA-OR-A5KS-01A-11D-A30A-10	6166	238249630	4949743	22	8138										
TGFBR2	7048	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	30713517	30713517	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	7	0.929330005145667	1.21974465024276	1.66781411359725	1.10138667879063	0.286130536130536	1	0	ggcagtcaagatctttccctAtgaggagtatgcctcttgga	11	9	3	2	novel		TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	TGFBR2-1698	NM_001024847	exon5	c.A917G	p.Y306C	TTCCCTATGAGGA	.	356	208	202	1	.	0	0	0	0	0	G	30713517	A	G	30713517	3	3	34	1	0	0	0	0	1	0	0	0	15859	449	16	4	935	4	TGFBR2	3	30713517	Missense_Mutation	SNP	A	TCGA-OR-A5KS-01A-11D-A30A-10		30713517	167308913	23	8139										
CCR2	729230	broad.mit.edu	37	chr3	46400062	46400062	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	7	0.929330005145667	1.21974465024276	1.66781411359725	1.10138667879063	0.286130536130536	1	0	ggagtgacttcaacaaacacGccttccactggggagcagga	12	11	1	1	rs3092960	byfrequency	TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	CCR2-568	NM_001123396	exon2	c.G1044A	p.T348T	AAACACGCCTTCC	.	86	5	58	0	G|0.929;A|0.071	0	0	0	0	0	A	46400062	G	A	46400062	2	1	34	1	0	0	0	0	0	0	0	1	2947	1074	38	1		1	CCR2	3	46400062	Silent	SNP	G	TCGA-OR-A5KS-01A-11D-A30A-10	15686545	46400062	151622368	24	8140										
LRIG1	26018	hgsc.bcm.edu	37	chr3	66550756	66550756	+	Missense_Mutation	SNP	G	G	C													0.0526315789473684	7	0.929330005145667	1.21974465024276	1.66781411359725	1.10138667879063	0.286130536130536	1	0	ggtcaccggctccagccgaaGcaaaagcagccagagaagga					rs1403625		TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	LRIG1-230	NM_015541	exon1	c.C76G	p.L26V	GCCGAAGCAAAAG	.	4	4	0	0	G|0.237;C|0.763	0	0	0	0	0	C	66550756	G	C	66550756	3	2	34	1	0	0	0	0	1	0	0	0	8971	971	34	3	3281	3	LRIG1	3	66550756	Missense_Mutation	SNP	G	TCGA-OR-A5KS-01A-11D-A30A-10	20150694	66550756	131471674	25	8141	85	2								
LRIG1	26018	hgsc.bcm.edu	37	chr3	66550762	66550762	+	Missense_Mutation	SNP	G	G	C													0.0526315789473684	7	0.929330005145667	1.21974465024276	1.66781411359725	1.10138667879063	0.286130536130536	1	0	cggctccagccgaagcaaaaGcagccagagaaggagaaggc					rs1403626	byfrequency	TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	LRIG1-230	NM_015541	exon1	c.C70G	p.L24V	GCAAAAGCAGCCA	.	4	4	0	0	G|0.252;C|0.748	0	0	0	0	0	C	66550762	G	C	66550762	3	2	34	1	0	0	0	0	1	0	0	0	8971	971	34	3	3287	3	LRIG1	3	66550762	Missense_Mutation	SNP	G	TCGA-OR-A5KS-01A-11D-A30A-10	6	66550762	131471668	26	8142	85	2								
CHST13	166012	hgsc.bcm.edu	37	chr3	126260995	126260995	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	7	0.929330005145667	1.21974465024276	1.66781411359725	1.10138667879063	0.286130536130536	1	0	gccgccttccagaggcgctaCggtgcacgcatcgttcagcg	13	15	1	1	rs7614066	byfrequency	TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	CHST13-90	NM_152889	exon3	c.C600T	p.Y200Y	GCGCTACGGTGCA	.	12	7	0	0	C|0.956;T|0.044	0	0	0	0	0	T	126260995	C	T	126260995	2	4	34	1	0	0	0	0	0	0	0	1	3407	547	19	1		1	CHST13	3	126260995	Silent	SNP	C	TCGA-OR-A5KS-01A-11D-A30A-10	59710233	126260995	71761435	27	8143										
EEFSEC	60678	hgsc.bcm.edu	37	chr3	127872494	127872494	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	7	0.929330005145667	1.21974465024276	1.66781411359725	1.10138667879063	0.286130536130536	1	0	agccgcgagcgcggcatcacGctcgatctgggcttctcgtg	14	14	3	0	rs148745324	byfrequency	TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	EEFSEC-91	NM_021937	exon1	c.G144T	p.T48T	CATCACGCTCGAT	.	37	18	2	0	G|0.996;T|0.004	0	0	0	0	0	T	127872494	G	T	127872494	2	4	34	1	0	0	0	0	0	0	0	1	4942	1074	38	2		2	EEFSEC	3	127872494	Silent	SNP	G	TCGA-OR-A5KS-01A-11D-A30A-10	1611499	127872494	70149936	28	8144										
DNAJC13	23317	bcgsc.ca	37	chr3	132166266	132166266	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	7	0.929330005145667	1.21974465024276	1.66781411359725	1.10138667879063	0.286130536130536	1	0	agtggaaaaaagtcagaaacTttaaaattttctacagagca	7	5	2	2	rs11917172	byfrequency	TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	DNAJC13-272	NM_015268	exon4	c.T246G	p.T82T	AGAAACTTTAAAA	.	307	8	176	0	T|0.900;G|0.100	0	0	0	0	0	G	132166266	T	G	132166266	2	3	34	1	0	0	0	0	0	0	0	1	4643	1596	56	5		5	DNAJC13	3	132166266	Silent	SNP	T	TCGA-OR-A5KS-01A-11D-A30A-10	4293772	132166266	65856164	29	8145										
NDUFB5	4711	broad.mit.edu	37	chr3	179322628	179322629	+	Frame_Shift_Ins	INS	-	-	G													0.0526315789473684	7	0.929330005145667	1.21974465024276	1.66781411359725	1.10138667879063	0.286130536130536	1	0	ggccatgagtttgttgcggcINSgggtttcggttactgcggtg					novel		TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	NDUFB5-91	NM_001199958	exon1	c.25_26insG	p.R9fs	TTGCGGCGGGTTT	.	107	7	79	0	.	0	0	0	0	0	G	179322629	-	G	179322628	7	5	34	1	0	1	1	0	0	0	0	0	10313	759	27	0	27	0	NDUFB5	3	179322628	Frame_Shift_Ins	INS	-	TCGA-OR-A5KS-01A-11D-A30A-10	47156362	179322628	18699802	30	8146										
YEATS2	55689	broad.mit.edu;bcgsc.ca	37	chr3	183469993	183469993	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	7	0.929330005145667	1.21974465024276	1.66781411359725	1.10138667879063	0.286130536130536	1	0	ccccagtgaaagcttcttcaCcaataaagcagtcacatgag	7	12	3	2	novel		TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	YEATS2-138	NM_018023	exon10	c.C1102T	p.P368S	TCTTCACCAATAA	.	146	6	180	1	.	0	0	0	0	0	T	183469993	C	T	183469993	3	4	34	1	0	0	0	0	1	0	0	0	17510	507	18	3	1136	3	YEATS2	3	183469993	Missense_Mutation	SNP	C	TCGA-OR-A5KS-01A-11D-A30A-10	4147365	183469993	14552437	31	8147										
TBC1D1	23216	hgsc.bcm.edu	37	chr4	38016372	38016372	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	7	0.929330005145667	1.21974465024276	1.66781411359725	1.10138667879063	0.286130536130536	1	0	cccaacccgccccatgccgcGcccacagggagccaggagcc	11	21	0	0	rs61731587		TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	TBC1D1-91	NM_015173	exon3	c.G660A	p.A220A	TGCCGCGCCCACA	.	31	23	0	0	G|0.968;A|0.032	0	0	0	0	0	A	38016372	G	A	38016372	2	1	34	1	0	0	0	0	0	0	0	1	15634	1074	38	1		1	TBC1D1	4	38016372	Silent	SNP	G	TCGA-OR-A5KS-01A-11D-A30A-10		38016372	153137904	32	8148										
SHROOM3	57619	bcgsc.ca	37	chr4	77660731	77660731	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	7	0.929330005145667	1.21974465024276	1.66781411359725	1.10138667879063	0.286130536130536	1	0	tgctgccgaccagcatctacCcggtaccttccctggagcca	9	17	1	0	rs344141	byfrequency	TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	SHROOM3-93	NM_020859	exon5	c.C1405G	p.P469A	ATCTACCCGGTAC	.	214	7	135	1	C|0.486;G|0.514	0	0	0	0	0	G	77660731	C	G	77660731	3	3	34	1	0	0	0	0	1	0	0	0	14330	623	22	3	1423	3	SHROOM3	4	77660731	Missense_Mutation	SNP	C	TCGA-OR-A5KS-01A-11D-A30A-10	39644359	77660731	113493545	33	8149										
HELQ	113510	broad.mit.edu	37	chr4	84376805	84376806	+	Frame_Shift_Del	DEL	GA	GA	-													0.0526315789473684	7	0.929330005145667	1.21974465024276	1.66781411359725	1.10138667879063	0.286130536130536	1	0	cttggacggttccttttgggGagagacacccgccggcggat					novel		TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	HELQ-155	NM_133636	exon1	c.41_42del	p.14_14del	TTTGGGGAGAGAC	.	53	12	30	0	.	0	0	0	0	0	-	84376806	GA	-	84376805	7	5	34	1	0	1	0	1	0	0	0	0	7068	1161	41	0	3335	0	HELQ	4	84376805	Frame_Shift_Del	DEL	GA	TCGA-OR-A5KS-01A-11D-A30A-10	6716074	84376805	106777471	34	8150										
NUDT9	53343	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	88379078	88379078	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	7	0.929330005145667	1.21974465024276	1.66781411359725	1.10138667879063	0.286130536130536	1	0	acatcaatgataaactgaagCtttatgccagtcactctcaa	5	10	3	2	novel		TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	NUDT9-90	NM_024047	exon8	c.C958G	p.L320V	CTGAAGCTTTATG	.	193	41	165	0	.	0	0	0	0	0	G	88379078	C	G	88379078	3	3	34	1	0	0	0	0	1	0	0	0	10775	797	28	3	988	3	NUDT9	4	88379078	Missense_Mutation	SNP	C	TCGA-OR-A5KS-01A-11D-A30A-10	4002273	88379078	102775198	35	8151										
DSPP	1834	bcgsc.ca	37	chr4	88537027	88537027	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	7	0.929330005145667	1.21974465024276	1.66781411359725	1.10138667879063	0.286130536130536	1	0	gacagcagtgatagcagtgaCagcagtgacagcagcgacag	14	9	0	3	novel		TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	DSPP-90	NM_014208	exon5	c.C3213T	p.D1071D	CAGTGACAGCAGT	.	1036	35	543	10	.	0	0	0	0	0	T	88537027	C	T	88537027	2	4	34	1	0	0	0	0	0	0	0	1	4793	477	17	3		3	DSPP	4	88537027	Silent	SNP	C	TCGA-OR-A5KS-01A-11D-A30A-10	157949	88537027	102617249	36	8152										
IRF2	3660	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	185339341	185339341	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0526315789473684	7	0.929330005145667	1.21974465024276	1.66781411359725	1.10138667879063	0.286130536130536	1	0	cttgatgtgcttaactttgtCttctttttctgtctttggtt	7	7	4	1	novel		TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	IRF2-91	NM_002199	exon5	c.G391A	p.D131N	CTTTGTCTTCTTT	.	120	32	135	0	.	0	0	0	0	0	T	185339341	C	T	185339341	3	4	34	1	0	0	0	0	1	0	0	0	7849	913	32	3	678	3	IRF2	4	185339341	Missense_Mutation	SNP	C	TCGA-OR-A5KS-01A-11D-A30A-10	96802314	185339341	5814935	37	8153										
LRRC14B	389257	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	194841	194841	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	7	0.929330005145667	1.21974465024276	1.66781411359725	1.10138667879063	0.286130536130536	1	0	agccccctacagaccccgctGcgagtactggacctggccaa	10	17	0	1	novel		TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	LRRC14B-69	NM_001080478	exon2	c.G918A	p.L306L	CCCGCTGCGAGTA	.	411	120	180	0	.	0	0	0	0	0	A	194841	G	A	194841	2	1	34	1	0	0	0	0	0	0	0	1	8996	1306	46	3		3	LRRC14B	5	194841	Silent	SNP	G	TCGA-OR-A5KS-01A-11D-A30A-10		194841	180720419	38	8154										
RGMB	285704	hgsc.bcm.edu	37	chr5	98109838	98109838	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	7	0.929330005145667	1.21974465024276	1.66781411359725	1.10138667879063	0.286130536130536	1	0	ccgaggttgagcagcgccgcAgccccgggctctgccccccg	14	19	1	1	rs2662263		TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	.	NM_001012761	exon3	c.A187C	p.S63R	CGCCGCAGCCCCG	.	4	4	0	0	T|0.046;G|0.950	0	0	0	0	0	C	98109838	A	C	98109838	3	2	34	1	0	0	0	0	1	0	0	0	13316	188	7	5	193	5	RGMB	5	98109838	Missense_Mutation	SNP	A	TCGA-OR-A5KS-01A-11D-A30A-10	97914997	98109838	82805422	39	8155										
NIPAL4	348938	broad.mit.edu;bcgsc.ca	37	chr5	156899408	156899408	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	7	0.929330005145667	1.21974465024276	1.66781411359725	1.10138667879063	0.286130536130536	1	0	tctttgtcattgccccacgtTacgggcaaaggaatatcctc	8	12	2	0	novel		TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	NIPAL4-68	NM_001099287	exon6	c.T841C	p.Y281H	CCACGTTACGGGC	.	72	33	50	1	.	0	0	0	0	0	C	156899408	T	C	156899408	3	2	34	1	0	0	0	0	1	0	0	0	10456	1754	61	4	863	4	NIPAL4	5	156899408	Missense_Mutation	SNP	T	TCGA-OR-A5KS-01A-11D-A30A-10	58789570	156899408	24015852	40	8156										
BTNL3	10917	bcgsc.ca	37	chr5	180432416	180432416	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	7	0.929330005145667	1.21974465024276	1.66781411359725	1.10138667879063	0.286130536130536	1	0	gtaacccatagaaaagctccCcaggaggtgcctcactctga	9	13	2	2	rs78885278		TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	.	NM_197975	exon8	c.C945T	p.P315P	AGCTCCCCAGGAG	.	206	8	219	0	T|1.000;|0.000	0	0	0	0	0	T	180432416	C	T	180432416	2	4	34	1	0	0	0	0	0	0	0	1	1569	610	22	3		3	BTNL3	5	180432416	Silent	SNP	C	TCGA-OR-A5KS-01A-11D-A30A-10	23533008	180432416	482844	41	8157										
OR2J2	26707	bcgsc.ca	37	chr6	29141849	29141849	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	7	0.929330005145667	1.21974465024276	1.66781411359725	1.10138667879063	0.286130536130536	1	0	tcgtttctgccacttgttggTtgcggcttcttgggtaattg	12	8	2	0	rs3116856	byfrequency	TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	OR2J2-68	NM_030905	exon1	c.T437C	p.V146A	TGTTGGTTGCGGC	.	206	6	254	3	T|0.566;C|0.434	0	0	0	0	0	C	29141849	T	C	29141849	3	2	34	1	0	0	0	0	1	0	0	0	11032	1725	60	4	439	4	OR2J2	6	29141849	Missense_Mutation	SNP	T	TCGA-OR-A5KS-01A-11D-A30A-10		29141849	141973218	42	8158										
MUC21	394263	bcgsc.ca	37	chr6	30954659	30954659	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	7	0.929330005145667	1.21974465024276	1.66781411359725	1.10138667879063	0.286130536130536	1	0	gtccagcacgacctccagtgGggccagcacagccaccaact	10	17	0	0	novel		TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	MUC21-92	NM_001010909	exon2	c.G707A	p.G236E	CCAGTGGGGCCAG	.	140	10	153	2	.	0	0	0	0	0	A	30954659	G	A	30954659	3	1	34	1	0	0	0	0	1	0	0	0	10005	1232	43	3	713	3	MUC21	6	30954659	Missense_Mutation	SNP	G	TCGA-OR-A5KS-01A-11D-A30A-10	1812810	30954659	140160408	43	8159										
FGD2	221472	bcgsc.ca	37	chr6	36976637	36976637	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0526315789473684	7	0.929330005145667	1.21974465024276	1.66781411359725	1.10138667879063	0.286130536130536	1	0	gaagcagcacccagaggccaGaggctagaggacgtgcatca	14	11	1	3	rs831510	byfrequency	TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	FGD2-229	NM_173558	exon2	c.G96C	p.Q32H	AGGCCAGAGGCTA	.	235	8	260	3	G|0.699;C|0.301	0	0	0	0	0	C	36976637	G	C	36976637	3	2	34	1	0	0	0	0	1	0	0	0	5852	933	33	3	102	3	FGD2	6	36976637	Missense_Mutation	SNP	G	TCGA-OR-A5KS-01A-11D-A30A-10	6021978	36976637	134138430	44	8160										
SLC17A5	26503	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr6	74345205	74345205	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	7	0.929330005145667	1.21974465024276	1.66781411359725	1.10138667879063	0.286130536130536	1	0	accagatccacaaaagaaacCaaaatattccaatagtacct	3	11	0	2	novel		TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	SLC17A5-190	NM_012434	exon6	c.G719A	p.W240X	AGAAACCAAAATA	.	9	9	12	0	.	0	0	0	0	0	T	74345205	C	T	74345205	4	4	34	1	0	0	0	0	0	1	0	0	14455	595	21	3	792	3	SLC17A5	6	74345205	Nonsense_Mutation	SNP	C	TCGA-OR-A5KS-01A-11D-A30A-10	37368568	74345205	96769862	45	8161										
FAM46A	55603	broad.mit.edu	37	chr6	82461728	82461742	+	In_Frame_Del	DEL	CCGCCGAAGTCGCCG	CCGCCGAAGTCGCCG	-													0.0526315789473684	7	0.929330005145667	1.21974465024276	1.66781411359725	1.10138667879063	0.286130536130536	1	0	gcccaccgaagctgccgccaCcgccgaagtcgccgccgccg					novel		TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	FAM46A-90	NM_017633	exon2	c.117_131del	p.39_44del	CCGCCACCGCCGA	.	142	42	10	0	.	0	0	0	0	0	-	82461742	CCGCCGAAGTCGCCG	-	82461728	7	5	34	1	0	1	0	1	0	0	0	0	5584	507	18	0	1205	0	FAM46A	6	82461728	In_Frame_Del	DEL	CCGCCGAAGTCGCCG	TCGA-OR-A5KS-01A-11D-A30A-10	8116523	82461728	88653339	46	8162										
HEBP2	23593	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	138726347	138726347	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	7	0.929330005145667	1.21974465024276	1.66781411359725	1.10138667879063	0.286130536130536	1	0	agcacgtccgtggagtctatGgactgggattcagccatcca	12	11	2	0	novel		TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	HEBP2-90	NM_014320	exon2	c.G168A	p.M56I	GTCTATGGACTGG	.	81	29	105	0	.	0	0	0	0	0	A	138726347	G	A	138726347	3	1	34	1	0	0	0	0	1	0	0	0	7058	1348	47	3	174	3	HEBP2	6	138726347	Missense_Mutation	SNP	G	TCGA-OR-A5KS-01A-11D-A30A-10	56264619	138726347	32388720	47	8163										
TBP	6908	hgsc.bcm.edu	37	chr6	170871004	170871004	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	7	0.929330005145667	1.21974465024276	1.66781411359725	1.10138667879063	0.286130536130536	1	0	gagcaacaaaggcagcagcaGcaacaacaacagcagcagca	10	12	0	0	novel		TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	TBP-91	NM_003194	exon3	c.G180A	p.Q60Q	GCAGCAGCAACAA	.	76	7	45	0	.	0	0	0	0	0	A	170871004	G	A	170871004	2	1	34	1	0	0	0	0	0	0	0	1	15681	962	34	3		3	TBP	6	170871004	Silent	SNP	G	TCGA-OR-A5KS-01A-11D-A30A-10	32144657	170871004	244063	48	8164										
TBP	6908	hgsc.bcm.edu	37	chr6	170871097	170871097	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	7	0.929330005145667	1.21974465024276	1.66781411359725	1.10138667879063	0.286130536130536	1	0	cagcagcagcagcagcagcaGcagcagcaacaggcagtggc	14	13	0	0	rs200496051		TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	TBP-91	NM_003194	exon3	c.G273A	p.Q91Q	GCAGCAGCAGCAG	.	132	9	92	0	.	0	0	0	0	0	A	170871097	G	A	170871097	2	1	34	1	0	0	0	0	0	0	0	1	15681	962	34	3		3	TBP	6	170871097	Silent	SNP	G	TCGA-OR-A5KS-01A-11D-A30A-10	93	170871097	243970	49	8165										
GARS	2617	hgsc.bcm.edu	37	chr7	30634661	30634661	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	7	0.929330005145667	1.21974465024276	1.66781411359725	1.10138667879063	0.286130536130536	1	0	ccctcagcgcggcctcctgcCccccgatctccttgcccgcc	8	24	2	0	rs1049402	byfrequency	TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	GARS-91	NM_002047	exon1	c.C124G	p.P42A	TCCTGCCCCCCGA	.	7	7	0	0	C|0.329;G|0.671	0	0	0	0	0	G	30634661	C	G	30634661	3	3	34	1	0	0	0	0	1	0	0	0	6262	623	22	3	126	3	GARS	7	30634661	Missense_Mutation	SNP	C	TCGA-OR-A5KS-01A-11D-A30A-10		30634661	128504002	50	8166										
CCDC132	55610	broad.mit.edu	37	chr7	92923947	92923948	+	Frame_Shift_Ins	INS	-	-	G													0.0526315789473684	7	0.929330005145667	1.21974465024276	1.66781411359725	1.10138667879063	0.286130536130536	1	0	ggacttacacgaatatggcaINSggtttggtttttttaaaatt					rs140810598	bycluster;by1000genomes	TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	CCDC132-90	NM_017667	exon14	c.1166_1167insG	p.Q389fs	TATGGCAGGTTTG	.	236	37	122	0	.	0	0	0	0	0	G	92923948	-	G	92923947	7	5	34	1	0	1	1	0	0	0	0	0	2773	202	7	0	1262	0	CCDC132	7	92923947	Frame_Shift_Ins	INS	-	TCGA-OR-A5KS-01A-11D-A30A-10	62289286	92923947	66214716	51	8167										
PABPC1	26986	broad.mit.edu	37	chr8	101724606	101724606	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	7	0.929330005145667	1.21974465024276	1.66781411359725	1.10138667879063	0.286130536130536	1	0	ttacctttgcactagtgattGtaccaaatggagaaaactct	7	8	1	2	rs202060459		TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	PABPC1-68	NM_002568	exon7	c.C956T	p.T319I	GTGATTGTACCAA	.	148	6	125	1	.	0	0	0	0	0	A	101724606	G	A	101724606	3	1	34	1	0	0	0	0	1	0	0	0	11392	1377	48	3	986	3	PABPC1	8	101724606	Missense_Mutation	SNP	G	TCGA-OR-A5KS-01A-11D-A30A-10		101724606	44639416	52	8168										
MAL2	114569	hgsc.bcm.edu	37	chr8	120220776	120220776	+	Splice_Site	DEL	G	G	-													0.0526315789473684	7	0.929330005145667	1.21974465024276	1.66781411359725	1.10138667879063	0.286130536130536	1	0	cgtgtccttcccgccgccccGgggtcaccctgcccgccggc					novel		TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	.	NM_052886	exon1	c.64+1G>-	.	CGCCCCGGGGTCA	.	11	11	0	0	.	0	0	0	0	0	-	120220776	G	-	120220776	8	5	34	1	0	1	0	1	0	0	1	0	9228	1116	39	0	67	0	MAL2	8	120220776	Splice_Site	DEL	G	TCGA-OR-A5KS-01A-11D-A30A-10	18496170	120220776	26143246	53	8169										
KCNQ3	3786	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr8	133144473	133144473	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	7	0.929330005145667	1.21974465024276	1.66781411359725	1.10138667879063	0.286130536130536	1	0	ccatcatgctttggtcttcgAtttctgatgtggatggtctg	11	8	4	1	novel		TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	KCNQ3-138	NM_004519	exon14	c.T1838A	p.I613N	TCTTCGATTTCTG	.	135	56	79	0	.	0	0	0	0	0	T	133144473	A	T	133144473	3	4	34	1	0	0	0	0	1	0	0	0	8105	333	12	5	788	5	KCNQ3	8	133144473	Missense_Mutation	SNP	A	TCGA-OR-A5KS-01A-11D-A30A-10	12923697	133144473	13219549	54	8170										
ZNF517	340385	hgsc.bcm.edu	37	chr8	146033347	146033347	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	7	0.929330005145667	1.21974465024276	1.66781411359725	1.10138667879063	0.286130536130536	1	0	gggtgcccaggacggcggcgTggggcagggcgccctgctcg	21	13	0	0	rs2976653		TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	ZNF517-90	NM_213605	exon5	c.T1046C	p.V349A	GCGGCGTGGGGCA	.	6	6	0	0	G|0.992;C|0.006	0	0	0	0	0	C	146033347	T	C	146033347	3	2	34	1	0	0	0	0	1	0	0	0	17998	1696	59	4	1060	4	ZNF517	8	146033347	Missense_Mutation	SNP	T	TCGA-OR-A5KS-01A-11D-A30A-10	12888874	146033347	330675	55	8171										
AQP7	364	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr9	33386976	33386976	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	7	0.929330005145667	1.21974465024276	1.66781411359725	1.10138667879063	0.286130536130536	1	0	ggctcactcaccagagatgcGgcctgccacgtgcactccca	10	17	2	1	rs143391243	byfrequency	TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	AQP7-90	NM_001170	exon4	c.C259T	p.R87C	AGATGCGGCCTGC	.	242	33	237	0	G|0.999;A|0.001	0	0	0	0	0	A	33386976	G	A	33386976	3	1	34	1	0	0	0	0	1	0	0	0	831	1116	39	1	789	1	AQP7	9	33386976	Missense_Mutation	SNP	G	TCGA-OR-A5KS-01A-11D-A30A-10		33386976	107826455	56	8172										
AKNA	80709	bcgsc.ca	37	chr9	117124731	117124731	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	7	0.929330005145667	1.21974465024276	1.66781411359725	1.10138667879063	0.286130536130536	1	0	tccccttggagccggcaagcGgctgggcagggtgttgctcc	16	13	0	0	rs3748176	byfrequency	TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	AKNA-94	NM_030767	exon8	c.C1871T	p.P624L	GCAAGCGGCTGGG	.	54	4	40	0	G|0.599;A|0.401	0	0	0	0	0	A	117124731	G	A	117124731	3	1	34	1	0	0	0	0	1	0	0	0	463	1116	39	1	2508	1	AKNA	9	117124731	Missense_Mutation	SNP	G	TCGA-OR-A5KS-01A-11D-A30A-10	83737755	117124731	24088700	57	8173										
ASTN2	23245	broad.mit.edu	37	chr9	119448979	119448979	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0526315789473684	7	0.929330005145667	1.21974465024276	1.66781411359725	1.10138667879063	0.286130536130536	1	0	tttgggttcccgggtaccttCagtctgcagggacaggggct	15	10	2	0	rs10983304	byfrequency	TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	ASTN2-161	NM_198186	exon1	c.G106A	p.E36K	TACCTTCAGTCTG	.	121	4	71	0	C|0.979;T|0.021	0	0	0	0	0	T	119448979	C	T	119448979	3	4	34	1	0	0	0	0	1	0	0	0	1066	835	29	3	1367	3	ASTN2	9	119448979	Missense_Mutation	SNP	C	TCGA-OR-A5KS-01A-11D-A30A-10	2324248	119448979	21764452	58	8174										
LMX1B	4010	broad.mit.edu	37	chr9	129376842	129376843	+	Frame_Shift_Ins	INS	-	-	C													0.0526315789473684	7	0.929330005145667	1.21974465024276	1.66781411359725	1.10138667879063	0.286130536130536	1	0	agcacgccctgcgccccgggINScccgccactctgggggtgct					novel		TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	LMX1B-90	NM_002316	exon1	c.114_115insC	p.G38fs	CCCCGGGCCCGCC	.	104	8	5	0	.	0	0	0	0	0	C	129376843	-	C	129376842	7	5	34	1	0	1	1	0	0	0	0	0	8886	1190	42	0	116	0	LMX1B	9	129376842	Frame_Shift_Ins	INS	-	TCGA-OR-A5KS-01A-11D-A30A-10	9927863	129376842	11836589	59	8175										
SVIL	6840	bcgsc.ca	37	chr10	29821523	29821523	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	7	0.929330005145667	1.21974465024276	1.66781411359725	1.10138667879063	0.286130536130536	1	0	cggagctgggcgacagagacTtttgtgtccagcatgctgat	14	9	0	2	rs1328323	byfrequency	TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	SVIL-96	NM_021738	exon8	c.A1773G	p.K591K	AGAGACTTTTGTG	.	135	5	178	1	C|0.381;G|0.000;T|0.619	0	0	0	0	0	C	29821523	T	C	29821523	2	2	34	1	0	0	0	0	0	0	0	1	15458	1606	56	4		4	SVIL	10	29821523	Silent	SNP	T	TCGA-OR-A5KS-01A-11D-A30A-10		29821523	105713224	60	8176										
SFTPD	6441	bcgsc.ca	37	chr10	81706324	81706324	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	7	0.929330005145667	1.21974465024276	1.66781411359725	1.10138667879063	0.286130536130536	1	0	ccagggtgcaagcactgggcAttgttctgtgggagtaggtc	16	8	1	0	rs721917	byfrequency	TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	SFTPD-91	NM_003019	exon2	c.T92C	p.M31T	CTGGGCATTGTTC	.	99	5	127	0	A|0.559;G|0.441	0	0	0	0	0	G	81706324	A	G	81706324	3	3	34	1	0	0	0	0	1	0	0	0	14228	217	8	4	1063	4	SFTPD	10	81706324	Missense_Mutation	SNP	A	TCGA-OR-A5KS-01A-11D-A30A-10	51884801	81706324	53828423	61	8177										
HECTD2	143279	hgsc.bcm.edu	37	chr10	93170250	93170250	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	7	0.929330005145667	1.21974465024276	1.66781411359725	1.10138667879063	0.286130536130536	1	0	ctccgctggtggtggcggcgCccgcgcctgaggagaggaaa	18	12	0	2	rs7081569	byfrequency	TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	HECTD2-658	NM_182765	exon1	c.C55G	p.P19A	GCGGCGCCCGCGC	.	6	6	0	0	C|0.154;G|0.846	0	0	0	0	0	G	93170250	C	G	93170250	3	3	34	1	0	0	0	0	1	0	0	0	7061	739	26	3	57	3	HECTD2	10	93170250	Missense_Mutation	SNP	C	TCGA-OR-A5KS-01A-11D-A30A-10	11463926	93170250	42364497	62	8178										
NOC3L	64318	broad.mit.edu	37	chr10	96109888	96109888	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0526315789473684	7	0.929330005145667	1.21974465024276	1.66781411359725	1.10138667879063	0.286130536130536	1	0	accaattttgacatgtcattCatgagagggacaatcaatac	7	8	3	2	rs149695235	byfrequency	TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	NOC3L-91	NM_022451	exon9	c.G1110A	p.M370I	GTCATTCATGAGA	.	136	4	137	0	C|0.998;T|0.002	0	0	0	0	0	T	96109888	C	T	96109888	3	4	34	1	0	0	0	0	1	0	0	0	10543	826	29	3	1344	3	NOC3L	10	96109888	Missense_Mutation	SNP	C	TCGA-OR-A5KS-01A-11D-A30A-10	2939638	96109888	39424859	63	8179										
LZTS2	84445	broad.mit.edu	37	chr10	102766682	102766682	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	7	0.929330005145667	1.21974465024276	1.66781411359725	1.10138667879063	0.286130536130536	1	0	cagcgggagcggcggcggggTgaggagcagcgggacagctt	22	9	0	1	novel		TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	LZTS2-155	NM_032429	exon5	c.T1767G	p.G589G	GCGGGGTGAGGAG	.	104	26	17	0	.	0	0	0	0	0	G	102766682	T	G	102766682	2	3	34	1	0	0	0	0	0	0	0	1	9167	1683	59	5		5	LZTS2	10	102766682	Silent	SNP	T	TCGA-OR-A5KS-01A-11D-A30A-10	6656794	102766682	32768065	64	8180										
MUC2	4583	bcgsc.ca	37	chr11	1093312	1093312	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	7	0.929330005145667	1.21974465024276	1.66781411359725	1.10138667879063	0.286130536130536	1	0	ccactacggtgaccccaaccCcaacacccaccggcacacag	6	21	0	1	novel		TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	MUC2-90	NM_002457	exon30	c.C5131G	p.P1711A	CCAACCCCAACAC	.	152	11	115	3	.	0	0	0	0	0	G	1093312	C	G	1093312	3	3	34	1	0	0	0	0	1	0	0	0	10003	623	22	3	5249	3	MUC2	11	1093312	Missense_Mutation	SNP	C	TCGA-OR-A5KS-01A-11D-A30A-10		1093312	133913204	65	8181										
MUC2	4583	bcgsc.ca	37	chr11	1093375	1093375	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	7	0.929330005145667	1.21974465024276	1.66781411359725	1.10138667879063	0.286130536130536	1	0	ccaccaccactacggtgaccCcaaccccaacacccaccggc	5	23	0	1	novel		TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	MUC2-90	NM_002457	exon30	c.C5194T	p.P1732S	GTGACCCCAACCC	.	172	14	132	2	.	0	0	0	0	0	T	1093375	C	T	1093375	3	4	34	1	0	0	0	0	1	0	0	0	10003	623	22	3	5312	3	MUC2	11	1093375	Missense_Mutation	SNP	C	TCGA-OR-A5KS-01A-11D-A30A-10	63	1093375	133913141	66	8182										
KRTAP5-5	439915	broad.mit.edu	37	chr11	1651157	1651157	+	Frame_Shift_Del	DEL	A	A	-													0.0526315789473684	7	0.929330005145667	1.21974465024276	1.66781411359725	1.10138667879063	0.286130536130536	1	0	ggctgtggctccggctgtggAggctgtggctctggctgtgg					novel		TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	KRTAP5-5-23	NM_001001480	exon1	c.87delA	p.G29fs	CTGTGGAGGCTGT	.	114	7	5	0	.	0	0	0	0	0	-	1651157	A	-	1651157	7	5	34	1	0	1	0	1	0	0	0	0	8586	291	11	0	89	0	KRTAP5-5	11	1651157	Frame_Shift_Del	DEL	A	TCGA-OR-A5KS-01A-11D-A30A-10	557782	1651157	133355359	67	8183	86	2								
KRTAP5-5	439915	broad.mit.edu	37	chr11	1651159	1651169	+	Frame_Shift_Del	DEL	GCTGTGGCTCT	GCTGTGGCTCT	-													0.0526315789473684	7	0.929330005145667	1.21974465024276	1.66781411359725	1.10138667879063	0.286130536130536	1	0	ctgtggctccggctgtggagGctgtggctctggctgtgggg					novel		TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	KRTAP5-5-23	NM_001001480	exon1	c.89_99del	p.30_33del	GTGGAGGCTGTGG	.	110	7	5	0	.	0	0	0	0	0	-	1651169	GCTGTGGCTCT	-	1651159	7	5	34	1	0	1	0	1	0	0	0	0	8586	1203	42	0	91	0	KRTAP5-5	11	1651159	Frame_Shift_Del	DEL	GCTGTGGCTCT	TCGA-OR-A5KS-01A-11D-A30A-10	2	1651159	133355357	68	8184	86	2								
SYT8	90019	hgsc.bcm.edu	37	chr11	1858572	1858572	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	7	0.929330005145667	1.21974465024276	1.66781411359725	1.10138667879063	0.286130536130536	1	0	cccggcggcccattgcccagCggcaccccctgcggccagcc	12	22	0	0	rs2292474	byfrequency	TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	SYT8-91	NM_138567	exon9	c.C1117T	p.R373W	GCCCAGCGGCACC	.	19	19	0	0	C|0.602;T|0.398	0	0	0	0	0	T	1858572	C	T	1858572	3	4	34	1	0	0	0	0	1	0	0	0	15517	759	27	1	1151	1	SYT8	11	1858572	Missense_Mutation	SNP	C	TCGA-OR-A5KS-01A-11D-A30A-10	207413	1858572	133147944	69	8185										
OR52R1	119695	bcgsc.ca	37	chr11	4825349	4825349	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	7	0.929330005145667	1.21974465024276	1.66781411359725	1.10138667879063	0.286130536130536	1	0	ctcatgagcatgaaaccagaAtatggccaacatcttaggtt	8	9	2	3	rs17327254	byfrequency	TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	OR52R1-69	NM_001005177	exon1	c.T262C	p.F88L	ACCAGAATATGGC	.	195	7	210	2	A|0.937;G|0.063	0	0	0	0	0	G	4825349	A	G	4825349	3	3	34	1	0	0	0	0	1	0	0	0	11160	101	4	4	688	4	OR52R1	11	4825349	Missense_Mutation	SNP	A	TCGA-OR-A5KS-01A-11D-A30A-10	2966777	4825349	130181167	70	8186										
OR52E2	119678	bcgsc.ca	37	chr11	5080844	5080844	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	7	0.929330005145667	1.21974465024276	1.66781411359725	1.10138667879063	0.286130536130536	1	0	aggggtgaaactgggtgtcaTtgggaaggaacatcctgctt	15	6	1	1	rs16909440	byfrequency	TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	OR52E2-71	NM_001005164	exon1	c.A14G	p.N5S	GTGTCATTGGGAA	.	96	6	115	0	C|0.306;N|0.000	0	0	0	0	0	C	5080844	T	C	5080844	3	2	34	1	0	0	0	0	1	0	0	0	11144	1493	52	4	966	4	OR52E2	11	5080844	Missense_Mutation	SNP	T	TCGA-OR-A5KS-01A-11D-A30A-10	255495	5080844	129925672	71	8187										
WT1	7490	hgsc.bcm.edu	37	chr11	32456694	32456694	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	7	0.929330005145667	1.21974465024276	1.66781411359725	1.10138667879063	0.286130536130536	1	0	acgtcggagcccatttgctgCggctcagacccggacgcccc	12	17	1	1	rs2234582	byfrequency	TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	WT1-6891	NM_024424	exon1	c.G198T	p.P66P	TTGCTGCGGCTCA	.	6	4	0	0	C|0.748;A|0.252	0	0	0	0	0	A	32456694	C	A	32456694	2	1	34	1	0	0	0	0	0	0	0	1	17446	755	27	2		2	WT1	11	32456694	Silent	SNP	C	TCGA-OR-A5KS-01A-11D-A30A-10	27375850	32456694	102549822	72	8188										
CKAP5	9793	bcgsc.ca	37	chr11	46784697	46784697	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	7	0.929330005145667	1.21974465024276	1.66781411359725	1.10138667879063	0.286130536130536	1	0	tttaagataagatccaggcaAccaataactccttctttttc	4	10	1	2	rs7928445	byfrequency	TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	CKAP5-92	NM_001008938	exon30	c.T3720G	p.G1240G	CAGGCAACCAATA	.	84	5	136	0	A|0.851;C|0.149	0	0	0	0	0	C	46784697	A	C	46784697	2	2	34	1	0	0	0	0	0	0	0	1	3451	30	2	5		5	CKAP5	11	46784697	Silent	SNP	A	TCGA-OR-A5KS-01A-11D-A30A-10	14328003	46784697	88221819	73	8189										
OR5M11	219487	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	56310261	56310261	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	7	0.929330005145667	1.21974465024276	1.66781411359725	1.10138667879063	0.286130536130536	1	0	ggcggaaggtcaggatggccTggaagagtccatctgagaag	17	7	2	2	novel		TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	.	NM_001005245	exon1	c.A473G	p.Q158R	ATGGCCTGGAAGA	.	120	38	169	0	.	0	0	0	0	0	C	56310261	T	C	56310261	3	2	34	1	0	0	0	0	1	0	0	0	11203	1580	55	4	447	4	OR5M11	11	56310261	Missense_Mutation	SNP	T	TCGA-OR-A5KS-01A-11D-A30A-10	9525564	56310261	78696255	74	8190										
TM7SF2	7108	hgsc.bcm.edu	37	chr11	64880090	64880090	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	7	0.929330005145667	1.21974465024276	1.66781411359725	1.10138667879063	0.286130536130536	1	0	ggtccacccgcgtccctgccGgggctggaggtgctgtggag	18	13	0	0	rs4930284		TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	TM7SF2-91	NM_003273	exon2	c.G156C	p.P52P	CCTGCCGGGGCTG	.	4	4	0	0	G|0.005;C|0.995	0	0	0	0	0	C	64880090	G	C	64880090	2	2	34	1	0	0	0	0	0	0	0	1	16011	1103	39	2		2	TM7SF2	11	64880090	Silent	SNP	G	TCGA-OR-A5KS-01A-11D-A30A-10	8569829	64880090	70126426	75	8191										
RHOD	29984	ucsc.edu	37	chr11	66834252	66834252	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	7	0.929330005145667	1.21974465024276	1.66781411359725	1.10138667879063	0.286130536130536	1	0	cggcccctgttctaccctgaCgccagcgtcctgctgctttg	10	17	1	1	rs2282502	byfrequency	TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	RHOD-659	NM_014578	exon3	c.C264T	p.D88D	CCCTGACGCCAGC	.	53	6	84	1	C|0.683;G|0.000;T|0.317	0	0	0	0	0	T	66834252	C	T	66834252	2	4	34	1	0	0	0	0	0	0	0	1	13372	535	19	1		1	RHOD	11	66834252	Silent	SNP	C	TCGA-OR-A5KS-01A-11D-A30A-10	1954162	66834252	68172264	76	8192										
UNC93B1	81622	broad.mit.edu	37	chr11	67763107	67763107	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	7	0.929330005145667	1.21974465024276	1.66781411359725	1.10138667879063	0.286130536130536	1	0	agtccagtcttgttcagggcActgcccacaccccaaagggc	10	15	2	0	novel		TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	.	.	.	.	.	CAGGGCACTGCCC	.	77	7	82	1	.	0	0	0	0	0	G	67763107	A	G	67763107	2	3	34	1	0	0	0	0	0	0	0	1	17035	156	6	4		4	UNC93B1	11	67763107	Silent	SNP	A	TCGA-OR-A5KS-01A-11D-A30A-10	928855	67763107	67243409	77	8193										
ARHGAP20	57569	bcgsc.ca	37	chr11	110450453	110450453	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	7	0.929330005145667	1.21974465024276	1.66781411359725	1.10138667879063	0.286130536130536	1	0	accagaagcatgtgggggtgGctctaagggtccttttggag	16	7	1	1	rs149514977	alternate_allele	TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	ARHGAP20-230	NM_020809	exon16	c.C3217A	p.P1073T	GGGGTGGCTCTAA	.	65	4	48	0	G|1.000;C|0.000	0	0	0	0	0	T	110450453	G	T	110450453	3	4	34	1	0	0	0	0	1	0	0	0	870	1203	42	3	362	3	ARHGAP20	11	110450453	Missense_Mutation	SNP	G	TCGA-OR-A5KS-01A-11D-A30A-10	42687346	110450453	24556063	78	8194										
DRD2	1813	bcgsc.ca	37	chr11	113283459	113283459	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	7	0.929330005145667	1.21974465024276	1.66781411359725	1.10138667879063	0.286130536130536	1	0	tctggtttggcggggctgtcGggagtgctgtggagaccatg	19	7	1	1	rs6277	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	DRD2-92	NM_000795	exon7	c.C957T	p.P319P	GCTGTCGGGAGTG	.	158	7	186	0	G|0.641;A|0.359	0	0	0	0	0	A	113283459	G	A	113283459	2	1	34	1	0	0	0	0	0	0	0	1	4768	1103	39	1		1	DRD2	11	113283459	Silent	SNP	G	TCGA-OR-A5KS-01A-11D-A30A-10	2833006	113283459	21723057	79	8195										
NCAPD2	9918	bcgsc.ca	37	chr12	6632430	6632430	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	7	0.929330005145667	1.21974465024276	1.66781411359725	1.10138667879063	0.286130536130536	1	0	tctctgctgttcccacagagCcaaggcccaggctttgattc	9	14	1	2	novel		TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	NCAPD2-660	NM_014865	exon17	c.C2132A	p.A711D	ACAGAGCCAAGGC	.	66	4	66	0	.	0	0	0	0	0	A	6632430	C	A	6632430	3	1	34	1	0	0	0	0	1	0	0	0	10234	739	26	3	2194	3	NCAPD2	12	6632430	Missense_Mutation	SNP	C	TCGA-OR-A5KS-01A-11D-A30A-10		6632430	127219465	80	8196										
RERG	85004	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	15262053	15262053	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0526315789473684	7	0.929330005145667	1.21974465024276	1.66781411359725	1.10138667879063	0.286130536130536	1	0	agctgggctgcctaactactGattttggtgagcatcttgtt	11	8	1	2	novel		TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	RERG-659	NM_032918	exon5	c.C591T	p.I197I	ACTACTGATTTTG	.	342	57	163	0	.	0	0	0	0	0	A	15262053	G	A	15262053	2	1	34	1	0	0	0	0	0	0	0	1	13267	1280	45	3		3	RERG	12	15262053	Silent	SNP	G	TCGA-OR-A5KS-01A-11D-A30A-10	8629623	15262053	118589842	81	8197										
NFE2	4778	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	54686624	54686624	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	7	0.929330005145667	1.21974465024276	1.66781411359725	1.10138667879063	0.286130536130536	1	0	cccgactccctgcctcccccCgtgcagtgggcttagcccgc	10	21	0	0	rs139796996		TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	NFE2-226	NM_001261461	exon4	c.G656A	p.R219Q	TCCCCCCGTGCAG	.	164	45	161	0	C|1.000;T|0.000	0	0	0	0	0	T	54686624	C	T	54686624	3	4	34	1	0	0	0	0	1	0	0	0	10395	652	23	1	469	1	NFE2	12	54686624	Missense_Mutation	SNP	C	TCGA-OR-A5KS-01A-11D-A30A-10	39424571	54686624	79165271	82	8198										
C12orf29	91298	hgsc.bcm.edu;bcgsc.ca	37	chr12	88434018	88434020	+	In_Frame_Del	DEL	TGT	TGT	-													0.0526315789473684	7	0.929330005145667	1.21974465024276	1.66781411359725	1.10138667879063	0.286130536130536	1	0	cagaaaaagtggatggaacaTgttgttatgttactacctat					novel		TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	TGT	TGT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	C12orf29-90	NM_001009894	exon2	c.184_186del	p.62_62del	GGAACATGTTGTT	.	485	172	259	2	.	0	0	0	0	0	-	88434020	TGT	-	88434018	7	5	34	1	0	1	0	1	0	0	0	0	1684	1464	51	0	190	0	C12orf29	12	88434018	In_Frame_Del	DEL	TGT	TCGA-OR-A5KS-01A-11D-A30A-10	33747394	88434018	45417877	83	8199										
GPC5	2262	bcgsc.ca	37	chr13	92345579	92345579	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	7	0.929330005145667	1.21974465024276	1.66781411359725	1.10138667879063	0.286130536130536	1	0	ggggctgtatttatttggtgCggatgttaatcctgaagaat	13	4	0	2	rs553717	byfrequency	TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	GPC5-519	NM_004466	exon3	c.C464T	p.A155V	TTGGTGCGGATGT	.	110	5	84	0	T|0.121;G|0.170	0	0	0	0	0	T	92345579	C	T	92345579	3	4	34	1	0	0	0	0	1	0	0	0	6621	768	27	1	474	1	GPC5	13	92345579	Missense_Mutation	SNP	C	TCGA-OR-A5KS-01A-11D-A30A-10		92345579	22824299	84	8200										
RBM23	55147	broad.mit.edu	37	chr14	23374128	23374128	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	7	0.929330005145667	1.21974465024276	1.66781411359725	1.10138667879063	0.286130536130536	1	0	ccggagcatgtcttcagtgaTattgaagtgcagggaaccca	12	9	2	2	novel		TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	RBM23-91	NM_001077351	exon9	c.A820G	p.I274V	CAGTGATATTGAA	.	109	4	143	1	.	0	0	0	0	0	C	23374128	T	C	23374128	3	2	34	1	0	0	0	0	1	0	0	0	13158	1406	49	4	523	4	RBM23	14	23374128	Missense_Mutation	SNP	T	TCGA-OR-A5KS-01A-11D-A30A-10		23374128	83975412	85	8201										
TMEM63C	57156	bcgsc.ca	37	chr14	77708804	77708804	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	7	0.929330005145667	1.21974465024276	1.66781411359725	1.10138667879063	0.286130536130536	1	0	atggccccacaccccaaagaCattatttggtaagcctcctc	6	15	0	1	rs61731611	byfrequency	TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	.	NM_020431	exon14	c.C1179T	p.D393D	CAAAGACATTATT	.	139	8	171	2	C|0.813;T|0.187	0	0	0	0	0	T	77708804	C	T	77708804	2	4	34	1	0	0	0	0	0	0	0	1	16229	477	17	3		3	TMEM63C	14	77708804	Silent	SNP	C	TCGA-OR-A5KS-01A-11D-A30A-10	54334676	77708804	29640736	86	8202										
AHNAK2	113146	bcgsc.ca	37	chr14	105410183	105410183	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	7	0.929330005145667	1.21974465024276	1.66781411359725	1.10138667879063	0.286130536130536	1	0	gtggccctccaggagtttcaTgtccacctggcgagcttgga	13	12	1	0	rs10438246	byfrequency	TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	AHNAK2-47	NM_138420	exon7	c.A11605G	p.M3869V	GTTTCATGTCCAC	.	212	10	249	3	T|0.456;C|0.544	0	0	0	0	0	C	105410183	T	C	105410183	3	2	34	1	0	0	0	0	1	0	0	0	415	1464	51	4	5786	4	AHNAK2	14	105410183	Missense_Mutation	SNP	T	TCGA-OR-A5KS-01A-11D-A30A-10	27701379	105410183	1939357	87	8203										
AHNAK2	113146	bcgsc.ca	37	chr14	105416010	105416010	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	7	0.929330005145667	1.21974465024276	1.66781411359725	1.10138667879063	0.286130536130536	1	0	agcttggcgcccttaacatcTgtctgggggcccttgaggtc	13	12	2	1	rs2582511	byfrequency	TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	AHNAK2-47	NM_138420	exon7	c.A5778G	p.T1926T	AACATCTGTCTGG	.	153	7	125	0	T|0.428;C|0.572	0	0	0	0	0	C	105416010	T	C	105416010	2	2	34	1	0	0	0	0	0	0	0	1	415	1567	55	4		4	AHNAK2	14	105416010	Silent	SNP	T	TCGA-OR-A5KS-01A-11D-A30A-10	5827	105416010	1933530	88	8204										
DMXL2	23312	broad.mit.edu	37	chr15	51756879	51756879	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	7	0.929330005145667	1.21974465024276	1.66781411359725	1.10138667879063	0.286130536130536	1	0	agagctttcttacttgaatgGggtattttcaggttctagca	10	6	3	2	novel		TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	DMXL2-99	NM_001174116	exon32	c.C7801A	p.P2601T	TGAATGGGGTATT	.	70	3	52	0	.	0	0	0	0	0	T	51756879	G	T	51756879	3	4	34	1	0	0	0	0	1	0	0	0	4606	1232	43	3	1360	3	DMXL2	15	51756879	Missense_Mutation	SNP	G	TCGA-OR-A5KS-01A-11D-A30A-10		51756879	50774513	89	8205										
LACTB	114294	hgsc.bcm.edu	37	chr15	63414083	63414083	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	7	0.929330005145667	1.21974465024276	1.66781411359725	1.10138667879063	0.286130536130536	1	0	gagacgccatgtaccggctcAtgtcagcagtgactgcccgg	13	13	2	2	rs34317102	byfrequency	TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	LACTB-90	NM_171846	exon1	c.A13C	p.M5L	CGGCTCATGTCAG	.	6	6	0	0	A|0.226;C|0.774	0	0	0	0	0	C	63414083	A	C	63414083	3	2	34	1	0	0	0	0	1	0	0	0	8619	217	8	5	15	5	LACTB	15	63414083	Missense_Mutation	SNP	A	TCGA-OR-A5KS-01A-11D-A30A-10	11657204	63414083	39117309	90	8206										
MTFMT	123263	hgsc.bcm.edu	37	chr15	65321780	65321780	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	7	0.929330005145667	1.21974465024276	1.66781411359725	1.10138667879063	0.286130536130536	1	0	ccgcagcgcctcgcgggcgaActggtccgtgccgaagaaga	15	14	0	2	rs188718836		TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	MTFMT-24	NM_139242	exon1	c.T172A	p.F58I	GGGCGAACTGGTC	.	20	18	0	0	A|0.995;T|0.005	0	0	0	0	0	T	65321780	A	T	65321780	3	4	34	1	0	0	0	0	1	0	0	0	9952	43	2	5	1033	5	MTFMT	15	65321780	Missense_Mutation	SNP	A	TCGA-OR-A5KS-01A-11D-A30A-10	1907697	65321780	37209612	91	8207										
HAPLN3	145864	bcgsc.ca	37	chr15	89430506	89430506	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	7	0.929330005145667	1.21974465024276	1.66781411359725	1.10138667879063	0.286130536130536	1	0	gagccgggcagcaggagcaaCgggaccaggagcaacaggcc	17	12	0	0	rs3743395	byfrequency	TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	HAPLN3-90	NM_178232	exon2	c.G24A	p.P8P	GAGCAACGGGACC	.	119	5	206	2	C|0.770;T|0.230	0	0	0	0	0	T	89430506	C	T	89430506	2	4	34	1	0	0	0	0	0	0	0	1	6977	523	19	1		1	HAPLN3	15	89430506	Silent	SNP	C	TCGA-OR-A5KS-01A-11D-A30A-10	24108726	89430506	13100886	92	8208										
EME2	197342	hgsc.bcm.edu	37	chr16	1823444	1823444	+	Silent	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.0526315789473684	7	0.929330005145667	1.21974465024276	1.66781411359725	1.10138667879063	0.286130536130536	1	0	ctgctgcggccggagcaggtCctgaagcgcctcgcggtgtg	17	13	0	1	rs761065		TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	EME2-229	NM_001257370	exon1	c.C216G	p.V72V	GCAGGTCCTGAAG	.	8	8	0	0	C|0.615;G|0.385	0	0	0	0	0	G	1823444	C	G	1823444	2	3	34	1	0	0	0	0	0	0	0	1	5102	842	30	3		3	EME2	16	1823444	Silent	SNP	C	TCGA-OR-A5KS-01A-11D-A30A-10		1823444	88531309	93	8209										
ZNF598	90850	hgsc.bcm.edu	37	chr16	2059674	2059674	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	7	0.929330005145667	1.21974465024276	1.66781411359725	1.10138667879063	0.286130536130536	1	0	acagcacgcagctcccgcctTcccgctcaggagctgccgcc	10	20	1	0	rs71384660		TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	ZNF598-432	NM_178167	exon2	c.A74G	p.E25G	CCGCCTTCCCGCT	.	5	5	0	0	T|0.007;C|0.993	0	0	0	0	0	C	2059674	T	C	2059674	3	2	34	1	0	0	0	0	1	0	0	0	18065	1770	62	4	2689	4	ZNF598	16	2059674	Missense_Mutation	SNP	T	TCGA-OR-A5KS-01A-11D-A30A-10	236230	2059674	88295079	94	8210										
C16orf71	146562	bcgsc.ca	37	chr16	4797457	4797457	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	7	0.929330005145667	1.21974465024276	1.66781411359725	1.10138667879063	0.286130536130536	1	0	gggtgggagggctcaggcccCtgaagacacagctggatcac	16	11	2	2	rs17853375	byfrequency	TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	C16orf71-68	NM_139170	exon9	c.C1394T	p.P465L	AGGCCCCTGAAGA	.	188	6	99	1	C|0.555;G|0.000;T|0.445	0	0	0	0	0	T	4797457	C	T	4797457	3	4	34	1	0	0	0	0	1	0	0	0	1834	681	24	3	1424	3	C16orf71	16	4797457	Missense_Mutation	SNP	C	TCGA-OR-A5KS-01A-11D-A30A-10	2737783	4797457	85557296	95	8211										
SEZ6L2	26470	hgsc.bcm.edu	37	chr16	29908433	29908433	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	7	0.929330005145667	1.21974465024276	1.66781411359725	1.10138667879063	0.286130536130536	1	0	gggtggctagcgtggggtccCgatcagatcctgggacagtg	18	9	1	1	rs11649499	byfrequency	TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	SEZ6L2-92	NM_001243332	exon3	c.G221C	p.R74P	GGGTCCCGATCAG	.	10	10	0	0	C|0.218;G|0.782	0	0	0	0	0	G	29908433	C	G	29908433	3	3	34	1	0	0	0	0	1	0	0	0	14179	652	23	2	2614	2	SEZ6L2	16	29908433	Missense_Mutation	SNP	C	TCGA-OR-A5KS-01A-11D-A30A-10	25110976	29908433	60446320	96	8212										
CCDC102A	92922	hgsc.bcm.edu	37	chr16	57562804	57562804	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	7	0.929330005145667	1.21974465024276	1.66781411359725	1.10138667879063	0.286130536130536	1	0	ggcagtgcagtccgaccaccGgcgcatggtcttctccatct	11	15	3	0	rs12935069		TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	CCDC102A-91	NM_033212	exon2	c.C286T	p.R96W	ACCACCGGCGCAT	.	4	4	0	0	G|0.001;A|0.999	0	0	0	0	0	A	57562804	G	A	57562804	3	1	34	1	0	0	0	0	1	0	0	0	2742	1115	39	1	1398	1	CCDC102A	16	57562804	Missense_Mutation	SNP	G	TCGA-OR-A5KS-01A-11D-A30A-10	27654371	57562804	32791949	97	8213										
TAF1C	9013	ucsc.edu	37	chr16	84213114	84213114	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	7	0.929330005145667	1.21974465024276	1.66781411359725	1.10138667879063	0.286130536130536	1	0	cgggccatggccttgcggagCacacccagccgctgcccttc	12	18	0	0	rs2230130	byfrequency	TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	TAF1C-91	NM_005679	exon14	c.G2043A	p.V681V	GCGGAGCACACCC	.	64	22	11	1	C|0.709;T|0.291	0	0	0	0	0	T	84213114	C	T	84213114	2	4	34	1	0	0	0	0	0	0	0	1	15558	697	25	3		3	TAF1C	16	84213114	Silent	SNP	C	TCGA-OR-A5KS-01A-11D-A30A-10	26650310	84213114	6141639	98	8214										
OVCA2	124641	hgsc.bcm.edu	37	chr17	1945354	1945354	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	7	0.929330005145667	1.21974465024276	1.66781411359725	1.10138667879063	0.286130536130536	1	0	cgggcataatggccgcgcagCgacccctgcgggtcctgtgc	15	15	0	0	rs145234879		TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	.	NM_080822	exon1	c.C13A	p.R5R	GCGCAGCGACCCC	.	18	17	0	0	C|0.991;A|0.009	0	0	0	0	0	A	1945354	C	A	1945354	2	1	34	1	0	0	0	0	0	0	0	1	11351	760	27	2		2	OVCA2	17	1945354	Silent	SNP	C	TCGA-OR-A5KS-01A-11D-A30A-10		1945354	79249856	99	8215										
ZZEF1	23140	bcgsc.ca	37	chr17	3916823	3916823	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	7	0.929330005145667	1.21974465024276	1.66781411359725	1.10138667879063	0.286130536130536	1	0	ccagtctggcgacaggccacGcccaccagccattcccaaat	8	18	1	0	rs8075562	byfrequency	TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	ZZEF1-93	NM_015113	exon52	c.C8499T	p.G2833G	GGCCACGCCCACC	.	76	5	100	0	G|0.778;A|0.222	0	0	0	0	0	A	3916823	G	A	3916823	2	1	34	1	0	0	0	0	0	0	0	1	18292	1074	38	1		1	ZZEF1	17	3916823	Silent	SNP	G	TCGA-OR-A5KS-01A-11D-A30A-10	1971469	3916823	77278387	100	8216										
VTN	7448	broad.mit.edu	37	chr17	26694766	26694766	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	7	0.929330005145667	1.21974465024276	1.66781411359725	1.10138667879063	0.286130536130536	1	0	gaagaagacactctggatggGttcacaggtggcaggcacaa	14	8	2	2	novel		TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	VTN-227	NM_000638	exon7	c.C1294A	p.P432T	GGATGGGTTCACA	.	60	9	59	4	.	0	0	0	0	0	T	26694766	G	T	26694766	3	4	34	1	0	0	0	0	1	0	0	0	17275	1261	44	3	150	3	VTN	17	26694766	Missense_Mutation	SNP	G	TCGA-OR-A5KS-01A-11D-A30A-10	22777943	26694766	54500444	101	8217										
RNF135	84282	hgsc.bcm.edu	37	chr17	29298390	29298390	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	7	0.929330005145667	1.21974465024276	1.66781411359725	1.10138667879063	0.286130536130536	1	0	ggcgggctccgaccctgcccActgcccctgcccgggctcca	12	21	0	0	novel		TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	RNF135-227	NM_197939	exon1	c.A299G	p.H100R	CTGCCCACTGCCC	.	6	6	0	0	.	0	0	0	0	0	G	29298390	A	G	29298390	3	3	34	1	0	0	0	0	1	0	0	0	13475	159	6	4	301	4	RNF135	17	29298390	Missense_Mutation	SNP	A	TCGA-OR-A5KS-01A-11D-A30A-10	2603624	29298390	51896820	102	8218										
KPNA2	3838	bcgsc.ca	37	chr17	66039350	66039350	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	7	0.929330005145667	1.21974465024276	1.66781411359725	1.10138667879063	0.286130536130536	1	0	catcatgatgatccagaagtAttagcagatacctgctgggc	10	9	1	4	rs4638	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	KPNA2-560	NM_002266	exon7	c.A801G	p.V267V	AGAAGTATTAGCA	.	57	4	102	0	A|0.406;G|0.594	0	0	0	0	0	G	66039350	A	G	66039350	2	3	34	1	0	0	0	0	0	0	0	1	8451	436	16	4		4	KPNA2	17	66039350	Silent	SNP	A	TCGA-OR-A5KS-01A-11D-A30A-10	36740960	66039350	15155860	103	8219										
EMILIN2	84034	bcgsc.ca	37	chr18	2885118	2885118	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	7	0.929330005145667	1.21974465024276	1.66781411359725	1.10138667879063	0.286130536130536	1	0	acgccggctcggcctcgaaaCagcttgaagaaagccacagg	12	13	0	2	rs592120	byfrequency	TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	EMILIN2-93	NM_032048	exon3	c.C414T	p.N138N	TCGAAACAGCTTG	.	59	6	105	1	C|0.763;T|0.237	0	0	0	0	0	T	2885118	C	T	2885118	2	4	34	1	0	0	0	0	0	0	0	1	5107	477	17	3		3	EMILIN2	18	2885118	Silent	SNP	C	TCGA-OR-A5KS-01A-11D-A30A-10		2885118	75192130	104	8220										
TWSG1	57045	hgsc.bcm.edu	37	chr18	9399488	9399488	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	7	0.929330005145667	1.21974465024276	1.66781411359725	1.10138667879063	0.286130536130536	1	0	tccagaatgtattgactatgGtagtaaaactgtcaaatgta	8	5	1	2	novel		TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	TWSG1-92	NM_020648	exon5	c.G635T	p.G212V	ACTATGGTAGTAA	.	51	4	85	0	.	0	0	0	0	0	T	9399488	G	T	9399488	3	4	34	1	0	0	0	0	1	0	0	0	16823	1261	44	3	649	3	TWSG1	18	9399488	Missense_Mutation	SNP	G	TCGA-OR-A5KS-01A-11D-A30A-10	6514370	9399488	68677760	105	8221										
ST8SIA5	29906	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr18	44260305	44260305	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0526315789473684	7	0.929330005145667	1.21974465024276	1.66781411359725	1.10138667879063	0.286130536130536	1	0	ttgaccaggtactgcggatgGaagtagtagacagcttgcgg	15	7	0	2	novel		TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	ST8SIA5-517	NM_013305	exon7	c.C831T	p.F277F	CGGATGGAAGTAG	.	203	81	124	2	.	0	0	0	0	0	A	44260305	G	A	44260305	2	1	34	1	0	0	0	0	0	0	0	1	15272	1165	41	3		3	ST8SIA5	18	44260305	Silent	SNP	G	TCGA-OR-A5KS-01A-11D-A30A-10	34860817	44260305	33816943	106	8222										
CDH7	1005	bcgsc.ca	37	chr18	63511176	63511176	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	7	0.929330005145667	1.21974465024276	1.66781411359725	1.10138667879063	0.286130536130536	1	0	gtgaagataattgtggaagaTgtagatgagccccctgtgtt	13	5	0	5	rs2306675	byfrequency	TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	CDH7-94	NM_004361	exon7	c.T1110C	p.D370D	GGAAGATGTAGAT	.	210	6	189	2	T|0.756;C|0.244	0	0	0	0	0	C	63511176	T	C	63511176	2	2	34	1	0	0	0	0	0	0	0	1	3121	1461	51	4		4	CDH7	18	63511176	Silent	SNP	T	TCGA-OR-A5KS-01A-11D-A30A-10	19250871	63511176	14566072	107	8223										
CCDC102B	79839	broad.mit.edu;ucsc.edu	37	chr18	66721363	66721363	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	7	0.929330005145667	1.21974465024276	1.66781411359725	1.10138667879063	0.286130536130536	1	0	agactgaactcaggcacttgCaaaactggtaattttttcac	7	9	2	2	novel		TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	CCDC102B-93	NM_001093729	exon10	c.C1531T	p.Q511X	CACTTGCAAAACT	.	12	5	12	0	.	0	0	0	0	0	T	66721363	C	T	66721363	4	4	34	1	0	0	0	0	0	1	0	0	2743	711	25	3	1557	3	CCDC102B	18	66721363	Nonsense_Mutation	SNP	C	TCGA-OR-A5KS-01A-11D-A30A-10	3210187	66721363	11355885	108	8224										
ARID3A	1820	hgsc.bcm.edu	37	chr19	929753	929753	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	7	0.929330005145667	1.21974465024276	1.66781411359725	1.10138667879063	0.286130536130536	1	0	gctgcgggcctgggacacccAgccagccccggcggctctga	15	17	1	1	rs1799595		TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	ARID3A-90	NM_005224	exon2	c.A225G	p.P75P	ACACCCAGCCAGC	.	9	9	0	0	A|0.114;G|0.886	0	0	0	0	0	G	929753	A	G	929753	2	3	34	1	0	0	0	0	0	0	0	1	916	175	7	4		4	ARID3A	19	929753	Silent	SNP	A	TCGA-OR-A5KS-01A-11D-A30A-10		929753	58199230	109	8225										
GRIN3B	116444	hgsc.bcm.edu	37	chr19	1003374	1003374	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	7	0.929330005145667	1.21974465024276	1.66781411359725	1.10138667879063	0.286130536130536	1	0	cgcctggccccgatggcggcGccagtggggggtgaagcacc	18	14	0	1	rs34585248		TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	GRIN3B-90	NM_138690	exon2	c.G672A	p.A224A	GGCGGCGCCAGTG	.	21	15	0	0	G|0.966;A|0.034	0	0	0	0	0	A	1003374	G	A	1003374	2	1	34	1	0	0	0	0	0	0	0	1	6805	1074	38	1		1	GRIN3B	19	1003374	Silent	SNP	G	TCGA-OR-A5KS-01A-11D-A30A-10	73621	1003374	58125609	110	8226										
GRIN3B	116444	hgsc.bcm.edu	37	chr19	1004687	1004687	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	7	0.929330005145667	1.21974465024276	1.66781411359725	1.10138667879063	0.286130536130536	1	0	gcgggacggccagctggactTggaaccgggaggtgcctctg	18	11	1	0	rs12978900	byfrequency	TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	GRIN3B-90	NM_138690	exon3	c.T1187C	p.L396S	TGGACTTGGAACC	.	40	18	0	0	T|0.967;C|0.033	0	0	0	0	0	C	1004687	T	C	1004687	3	2	34	1	0	0	0	0	1	0	0	0	6805	1821	63	4	1197	4	GRIN3B	19	1004687	Missense_Mutation	SNP	T	TCGA-OR-A5KS-01A-11D-A30A-10	1313	1004687	58124296	111	8227										
TCF3	6929	hgsc.bcm.edu	37	chr19	1619339	1619339	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	7	0.929330005145667	1.21974465024276	1.66781411359725	1.10138667879063	0.286130536130536	1	0	cctgcgtgccgcccgcccagTgacatggggccggtgaaacc	14	16	0	2	rs8140	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	TCF3-721	NM_003200	exon15	c.A1302G	p.S434S	GCCCAGTGACATG	.	4	4	0	0	T|0.403;C|0.597	0	0	0	0	0	C	1619339	T	C	1619339	2	2	34	1	0	0	0	0	0	0	0	1	15731	1683	59	4		4	TCF3	19	1619339	Silent	SNP	T	TCGA-OR-A5KS-01A-11D-A30A-10	614652	1619339	57509644	112	8228										
CHAF1A	10036	bcgsc.ca	37	chr19	4428809	4428809	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	7	0.929330005145667	1.21974465024276	1.66781411359725	1.10138667879063	0.286130536130536	1	0	gagcggcgagttctccttctTgaaagacctcaaaggccggc	12	12	3	2	novel		TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	CHAF1A-92	NM_005483	exon8	c.T1526C	p.L509S	CCTTCTTGAAAGA	.	52	4	75	0	.	0	0	0	0	0	C	4428809	T	C	4428809	3	2	34	1	0	0	0	0	1	0	0	0	3317	1821	63	4	1556	4	CHAF1A	19	4428809	Missense_Mutation	SNP	T	TCGA-OR-A5KS-01A-11D-A30A-10	2809470	4428809	54700174	113	8229										
HDGFRP2	0	hgsc.bcm.edu	37	chr19	4499666	4499680	+	In_Frame_Del	DEL	TGGCCGGGGAGGAGG	TGGCCGGGGAGGAGG	-													0.0526315789473684	7	0.929330005145667	1.21974465024276	1.66781411359725	1.10138667879063	0.286130536130536	1	0	ggagctggccggggaggagcTggccggggaggaggcccccc					novel		TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	TGGCCGGGGAGGAGG	TGGCCGGGGAGGAGG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	.	NM_032631	exon15	c.1739_1753del	p.580_585del	AGGAGCTGGCCGG	.	25	15	12	0	.	0	0	0	0	0	-	4499680	TGGCCGGGGAGGAGG	-	4499666	7	5	34	1	0	1	0	1	0	0	0	0	7041	1580	55	0	1797	0	HDGFRP2	19	4499666	In_Frame_Del	DEL	TGGCCGGGGAGGAGG	TCGA-OR-A5KS-01A-11D-A30A-10	70857	4499666	54629317	114	8230										
ZNF414	84330	hgsc.bcm.edu	37	chr19	8576670	8576670	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	7	0.929330005145667	1.21974465024276	1.66781411359725	1.10138667879063	0.286130536130536	1	0	aagggttccagcagcgggaaCggcaggcccggcgctgatgc	17	12	0	1	rs7175	byfrequency;by2hit2allele;by1000genomes	TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	ZNF414-90	NM_032370	exon5	c.G705A	p.P235P	CGGGAACGGCAGG	.	16	15	0	0	C|0.788;T|0.212	0	0	0	0	0	T	8576670	C	T	8576670	2	4	34	1	0	0	0	0	0	0	0	1	17928	523	19	1		1	ZNF414	19	8576670	Silent	SNP	C	TCGA-OR-A5KS-01A-11D-A30A-10	4077004	8576670	50552313	115	8231										
MUC16	94025	bcgsc.ca	37	chr19	9086318	9086318	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0526315789473684	7	0.929330005145667	1.21974465024276	1.66781411359725	1.10138667879063	0.286130536130536	1	0	gggggcattactgagagtgaGagaaatccatggtgtcacct	14	7	1	3	rs4520945	byfrequency	TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	MUC16-566	NM_024690	exon1	c.C5497T	p.L1833F	GAGTGAGAGAAAT	.	143	5	141	0	G|0.812;A|0.188	0	0	0	0	0	A	9086318	G	A	9086318	3	1	34	1	0	0	0	0	1	0	0	0	10001	942	33	3	38362	3	MUC16	19	9086318	Missense_Mutation	SNP	G	TCGA-OR-A5KS-01A-11D-A30A-10	509648	9086318	50042665	116	8232										
AP1M1	8907	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	16338981	16338981	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0526315789473684	7	0.929330005145667	1.21974465024276	1.66781411359725	1.10138667879063	0.286130536130536	1	0	tatggatcgagtcggtgatcGagaagcactcccacagccgc	12	12	0	2	novel		TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	AP1M1-156	NM_001130524	exon9	c.G886A	p.E296K	GTGATCGAGAAGC	.	137	27	86	0	.	0	0	0	0	0	A	16338981	G	A	16338981	3	1	34	1	0	0	0	0	1	0	0	0	734	1059	37	1	920	1	AP1M1	19	16338981	Missense_Mutation	SNP	G	TCGA-OR-A5KS-01A-11D-A30A-10	7252663	16338981	42790002	117	8233										
LSM14A	26065	broad.mit.edu	37	chr19	34710315	34710315	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	7	0.929330005145667	1.21974465024276	1.66781411359725	1.10138667879063	0.286130536130536	1	0	gctccaggtgctccttcagcTccaaggagagggcgtggggg	17	11	1	1	rs201741862		TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	LSM14A-91	NM_001114093	exon7	c.T801G	p.A267A	TTCAGCTCCAAGG	.	84	5	68	1	T|0.999;G|0.001	0	0	0	0	0	G	34710315	T	G	34710315	2	3	34	1	0	0	0	0	0	0	0	1	9081	1538	54	5		5	LSM14A	19	34710315	Silent	SNP	T	TCGA-OR-A5KS-01A-11D-A30A-10	18371334	34710315	24418668	118	8234										
CYP2A13	1553	hgsc.bcm.edu	37	chr19	41596013	41596013	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	7	0.929330005145667	1.21974465024276	1.66781411359725	1.10138667879063	0.286130536130536	1	0	cgcttctccatcgccaccctAaggggttttggcgtgggcaa	12	13	1	0	rs199984436		TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	CYP2A13-93	NM_000766	exon3	c.A405G	p.L135L	CACCCTAAGGGGT	.	215	11	22	0	A|0.999;G|0.001	0	0	0	0	0	G	41596013	A	G	41596013	2	3	34	1	0	0	0	0	0	0	0	1	4167	349	13	4		4	CYP2A13	19	41596013	Silent	SNP	A	TCGA-OR-A5KS-01A-11D-A30A-10	6885698	41596013	17532970	119	8235										
CEACAM1	634	bcgsc.ca	37	chr19	43031407	43031407	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	7	0.929330005145667	1.21974465024276	1.66781411359725	1.10138667879063	0.286130536130536	1	0	cggttgccatccactctttcCcctttgtaccagctgtagcc	7	16	1	0	rs79326931	byfrequency	TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	CEACAM1-515	NM_001184816	exon2	c.G210C	p.G70G	TCTTTCCCCTTTG	.	563	48	357	8	C|0.939;G|0.061	0	0	0	0	0	G	43031407	C	G	43031407	2	3	34	1	0	0	0	0	0	0	0	1	3193	610	22	3		3	CEACAM1	19	43031407	Silent	SNP	C	TCGA-OR-A5KS-01A-11D-A30A-10	1435394	43031407	16097576	120	8236										
CEACAM1	634	bcgsc.ca	37	chr19	43031434	43031434	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	7	0.929330005145667	1.21974465024276	1.66781411359725	1.10138667879063	0.286130536130536	1	0	taccagctgtagccaaaaagTtgctggggcagattgtggac	13	8	0	1	rs140316654	byfrequency	TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	CEACAM1-515	NM_001184816	exon2	c.A183T	p.Q61H	AAAAAGTTGCTGG	.	511	36	316	6	T|0.979;A|0.021	0	0	0	0	0	A	43031434	T	A	43031434	3	1	34	1	0	0	0	0	1	0	0	0	3193	1722	60	5	1526	5	CEACAM1	19	43031434	Missense_Mutation	SNP	T	TCGA-OR-A5KS-01A-11D-A30A-10	27	43031434	16097549	121	8237										
APOE	348	hgsc.bcm.edu	37	chr19	45411941	45411941	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	7	0.929330005145667	1.21974465024276	1.66781411359725	1.10138667879063	0.286130536130536	1	0	gcgcggacatggaggacgtgTgcggccgcctggtgcagtac	18	11	0	0	rs429358	byfrequency	TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	APOE-90	NM_000041	exon4	c.T388C	p.C130R	GACGTGTGCGGCC	.	21	8	2	0	T|0.861;C|0.139	0	0	0	0	0	C	45411941	T	C	45411941	3	2	34	1	0	0	0	0	1	0	0	0	802	1696	59	4	398	4	APOE	19	45411941	Missense_Mutation	SNP	T	TCGA-OR-A5KS-01A-11D-A30A-10	2380507	45411941	13717042	122	8238										
ZNF610	162963	bcgsc.ca	37	chr19	52856955	52856955	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	7	0.929330005145667	1.21974465024276	1.66781411359725	1.10138667879063	0.286130536130536	1	0	ggacgcttgacattcatggaCgtggccatcgaattctctca	10	11	3	1	rs1961205	byfrequency	TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	ZNF610-93	NM_001161427	exon4	c.C84T	p.D28D	CATGGACGTGGCC	.	65	5	48	0	C|0.610;T|0.390	0	0	0	0	0	T	52856955	C	T	52856955	2	4	34	1	0	0	0	0	0	0	0	1	18073	535	19	1		1	ZNF610	19	52856955	Silent	SNP	C	TCGA-OR-A5KS-01A-11D-A30A-10	7445014	52856955	6272028	123	8239										
NAT14	57106	hgsc.bcm.edu	37	chr19	55998262	55998262	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	7	0.929330005145667	1.21974465024276	1.66781411359725	1.10138667879063	0.286130536130536	1	0	ggagggctgtggctaccaggCcgaggggggctggggctgcc	22	10	0	0	rs77664073	byfrequency	TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	NAT14-91	NM_020378	exon3	c.C560T	p.A187V	ACCAGGCCGAGGG	.	10	6	2	0	C|0.873;T|0.127	0	0	0	0	0	T	55998262	C	T	55998262	3	4	34	1	0	0	0	0	1	0	0	0	10203	739	26	3	566	3	NAT14	19	55998262	Missense_Mutation	SNP	C	TCGA-OR-A5KS-01A-11D-A30A-10	3141307	55998262	3130721	124	8240										
ZSCAN1	284312	hgsc.bcm.edu	37	chr19	58549354	58549354	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	7	0.929330005145667	1.21974465024276	1.66781411359725	1.10138667879063	0.286130536130536	1	0	ttccagtaccacgtggcgagCgggccgcacctcgcgctggg	15	15	0	0	rs113374422	byfrequency	TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	ZSCAN1-92	NM_182572	exon3	c.C150T	p.S50S	GGCGAGCGGGCCG	.	41	29	0	0	C|0.975;T|0.025	0	0	0	0	0	T	58549354	C	T	58549354	2	4	34	1	0	0	0	0	0	0	0	1	18263	767	27	1		1	ZSCAN1	19	58549354	Silent	SNP	C	TCGA-OR-A5KS-01A-11D-A30A-10	2551092	58549354	579629	125	8241										
ZCCHC3	85364	hgsc.bcm.edu	37	chr20	278515	278515	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	7	0.929330005145667	1.21974465024276	1.66781411359725	1.10138667879063	0.286130536130536	1	0	ccaccggctggccgcggggaTccgaagggccgtcggagaga	18	13	0	1	rs2223665	byfrequency	TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	ZCCHC3-90	NM_033089	exon1	c.T288C	p.D96D	CGGGGATCCGAAG	.	9	4	0	0	T|0.454;C|0.546	0	0	0	0	0	C	278515	T	C	278515	2	2	34	1	0	0	0	0	0	0	0	1	17626	1432	50	4		4	ZCCHC3	20	278515	Silent	SNP	T	TCGA-OR-A5KS-01A-11D-A30A-10		278515	62747005	126	8242										
PANK2	80025	hgsc.bcm.edu	37	chr20	3870124	3870124	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	7	0.929330005145667	1.21974465024276	1.66781411359725	1.10138667879063	0.286130536130536	1	0	actgctgctgcggatgggagGgggccggctcggcgcgccca	19	13	0	0	rs3737084	byfrequency	TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	PANK2-115	NM_153638	exon1	c.G377C	p.G126A	TGGGAGGGGGCCG	.	5	5	0	0	G|0.122;C|0.878	0	0	0	0	0	C	3870124	G	C	3870124	3	2	34	1	0	0	0	0	1	0	0	0	11446	1232	43	3	379	3	PANK2	20	3870124	Missense_Mutation	SNP	G	TCGA-OR-A5KS-01A-11D-A30A-10	3591609	3870124	59155396	127	8243										
IFT52	51098	bcgsc.ca	37	chr20	42264653	42264653	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	7	0.929330005145667	1.21974465024276	1.66781411359725	1.10138667879063	0.286130536130536	1	0	ctgccaacccttcagcctgcGgtgagtaggtgtgcttggga	14	11	1	1	rs41296223	byfrequency	TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	IFT52-92	NM_016004	exon11	c.G1011A	p.A337A	GCCTGCGGTGAGT	.	54	4	97	0	G|0.975;A|0.025	0	0	0	0	0	A	42264653	G	A	42264653	2	1	34	1	0	0	0	0	0	0	0	1	7582	1130	39	1		1	IFT52	20	42264653	Silent	SNP	G	TCGA-OR-A5KS-01A-11D-A30A-10	38394529	42264653	20760867	128	8244										
CLIC6	54102	hgsc.bcm.edu	37	chr21	36042579	36042579	+	Missense_Mutation	SNP	C	C	G													0.0526315789473684	7	0.929330005145667	1.21974465024276	1.66781411359725	1.10138667879063	0.286130536130536	1	0	gggtctcgggtgagccgcagCaatcgggggacggcagcctc					rs13049028	byfrequency	TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	CLIC6-91	NM_053277	exon1	c.C892G	p.Q298E	CCGCAGCAATCGG	.	10	7	1	0	C|0.802;G|0.198	0	0	0	0	0	G	36042579	C	G	36042579	3	3	34	1	0	0	0	0	1	0	0	0	3536	711	25	3	894	3	CLIC6	21	36042579	Missense_Mutation	SNP	C	TCGA-OR-A5KS-01A-11D-A30A-10		36042579	12087316	129	8245	87	2								
CLIC6	54102	hgsc.bcm.edu	37	chr21	36042584	36042584	+	Silent	SNP	G	G	A													0.0526315789473684	7	0.929330005145667	1.21974465024276	1.66781411359725	1.10138667879063	0.286130536130536	1	0	tcgggtgagccgcagcaatcGggggacggcagcctctcgcc					rs13049239	byfrequency	TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	CLIC6-91	NM_053277	exon1	c.G897A	p.S299S	GCAATCGGGGGAC	.	13	10	1	0	G|0.803;A|0.197	0	0	0	0	0	A	36042584	G	A	36042584	2	1	34	1	0	0	0	0	0	0	0	1	3536	1103	39	1		1	CLIC6	21	36042584	Silent	SNP	G	TCGA-OR-A5KS-01A-11D-A30A-10	5	36042584	12087311	130	8246	87	2								
COL6A2	1292	hgsc.bcm.edu	37	chr21	47532288	47532288	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	7	0.929330005145667	1.21974465024276	1.66781411359725	1.10138667879063	0.286130536130536	1	0	acgtcaccggcagcccctgcGggggcatcaagctgcaggcc	14	16	2	0	rs200710788		TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	COL6A2-515	NM_058175	exon3	c.G511A	p.G171R	CCCTGCGGGGGCA	.	17	15	0	0	.	0	0	0	0	0	A	47532288	G	A	47532288	3	1	34	1	0	0	0	0	1	0	0	0	3706	1116	39	1	517	1	COL6A2	21	47532288	Missense_Mutation	SNP	G	TCGA-OR-A5KS-01A-11D-A30A-10	11489704	47532288	597607	131	8247										
SNAP29	9342	bcgsc.ca	37	chr22	21213416	21213416	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	7	0.929330005145667	1.21974465024276	1.66781411359725	1.10138667879063	0.286130536130536	1	0	accatgtcagcttaccctaaAagctacaatccgttcgacga	6	13	1	0	rs1061064	byfrequency	TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	SNAP29-278	NM_004782	exon1	c.A18G	p.K6K	CCCTAAAAGCTAC	.	188	6	66	0	A|0.600;G|0.400	0	0	0	0	0	G	21213416	A	G	21213416	2	3	34	1	0	0	0	0	0	0	0	1	14866	11	1	4		4	SNAP29	22	21213416	Silent	SNP	A	TCGA-OR-A5KS-01A-11D-A30A-10		21213416	30091150	132	8248										
SLC38A5	92745	bcgsc.ca	37	chrX	48317386	48317386	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	7	0.929330005145667	1.21974465024276	1.66781411359725	1.10138667879063	0.286130536130536	1	0	taaagcctagactgacggccAtgaagaggactcccaggact	11	11	0	4	rs17281188	byfrequency	TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	SLC38A5-133	NM_033518	exon17	c.T1352C	p.M451T	ACGGCCATGAAGA	.	239	10	244	2	A|0.906;0|0.027	0	0	0	0	0	G	48317386	A	G	48317386	3	3	34	1	0	0	0	0	1	0	0	0	14642	217	8	4	70	4	SLC38A5	23	48317386	Missense_Mutation	SNP	A	TCGA-OR-A5KS-01A-11D-A30A-10		48317386	106953174	133	8249										
NUDT11	55190	broad.mit.edu	37	chrX	51239296	51239309	+	Frame_Shift_Del	DEL	TCCTCGAGGCAGCC	TCCTCGAGGCAGCC	-													0.0526315789473684	7	0.929330005145667	1.21974465024276	1.66781411359725	1.10138667879063	0.286130536130536	1	0	ctggttgggtttgcacttcaTcctcgaggcagcctcctcga					novel		TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	NUDT11-130	NM_018159	wholegene			ACTTCATCCTCGA	.	221	66	20	0	.	0	0	0	0	0	-	51239309	TCCTCGAGGCAGCC	-	51239296	7	5	34	1	0	1	0	1	0	0	0	0	10756	1435	50	0	501	0	NUDT11	23	51239296	Frame_Shift_Del	DEL	TCCTCGAGGCAGCC	TCGA-OR-A5KS-01A-11D-A30A-10	2921910	51239296	104031264	134	8250										
SLC7A3	84889	bcgsc.ca	37	chrX	70146475	70146475	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0526315789473684	7	0.929330005145667	1.21974465024276	1.66781411359725	1.10138667879063	0.286130536130536	1	0	cacaaccactgcagtccacaGcaggtctccagaaagcaatg	8	14	1	1	rs6525447	byfrequency	TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	SLC7A3-132	NM_032803	exon10	c.C1522G	p.L508V	TCCACAGCAGGTC	.	221	7	147	1	0|0.018;C|0.306	0	0	0	0	0	C	70146475	G	C	70146475	3	2	34	1	0	0	0	0	1	0	0	0	14733	962	34	3	349	3	SLC7A3	23	70146475	Missense_Mutation	SNP	G	TCGA-OR-A5KS-01A-11D-A30A-10	18907179	70146475	85124085	135	8251										
CTAG2	30848	bcgsc.ca	37	chrX	153881525	153881525	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0526315789473684	7	0.929330005145667	1.21974465024276	1.66781411359725	1.10138667879063	0.286130536130536	1	0	gaacagaacaggatacaactGaagcaggcggctgtccggcc	13	11	0	2	rs17328091	byfrequency	TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	CTAG2-131	NM_020994	exon1	c.C265G	p.Q89E	ACAACTGAAGCAG	.	221	10	84	0	0|0.004;C|0.526	0	0	0	0	0	C	153881525	G	C	153881525	3	2	34	1	0	0	0	0	1	0	0	0	3997	1299	45	3	514	3	CTAG2	23	153881525	Missense_Mutation	SNP	G	TCGA-OR-A5KS-01A-11D-A30A-10	83735050	153881525	1389035	136	8252										
CNR2	1269	bcgsc.ca	37	chr1	24201262	24201262	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0487804878048781	4	1	0.873822975517891	0	1.19838579499596	0.0606060606060606	0.532036613272311	0	aggcacagcatggagcagaaAgcaaaggccttcttgacctg	12	10	1	2	rs2502993	byfrequency	TCGA-OR-A5KT-01A-11D-A29I-10	TCGA-OR-A5KT-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	062c82a9-f4e0-4eb0-adbc-3cb73423050d	35c2cd8b-80ce-4327-a1a3-f3ab82a32ccc	.	CNR2-228	NM_001841	exon2	c.T846C	p.A282A	GCAGAAAGCAAAG	.	137	5	141	1	A|0.359;G|0.641	0	0	0	0	0	G	24201262	A	G	24201262	2	3	35	1	0	0	0	0	0	0	0	1	3638	59	3	4		4	CNR2	1	24201262	Silent	SNP	A	TCGA-OR-A5KT-01A-11D-A29I-10		24201262	225049359	1	8253										
MACF1	23499	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	39898819	39898820	+	Frame_Shift_Ins	INS	-	-	T													0.0487804878048781	4	1	0.873822975517891	0	1.19838579499596	0.0606060606060606	0.532036613272311	0	tggggaggagcaaaaaactgINStattacaggtgaattacatt					novel		TCGA-OR-A5KT-01A-11D-A29I-10	TCGA-OR-A5KT-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	062c82a9-f4e0-4eb0-adbc-3cb73423050d	35c2cd8b-80ce-4327-a1a3-f3ab82a32ccc	.	MACF1-165	NM_012090	exon64	c.11371_11372insT	p.V3791fs	AAAACTGTATTAC	.	269	83	203	0	.	0	0	0	0	0	T	39898820	-	T	39898819	7	5	35	1	0	1	1	0	0	0	0	0	9172	1377	48	0	17772	0	MACF1	1	39898819	Frame_Shift_Ins	INS	-	TCGA-OR-A5KT-01A-11D-A29I-10	15697557	39898819	209351802	2	8254										
MTF2	22823	broad.mit.edu;bcgsc.ca	37	chr1	93575975	93575975	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0487804878048781	4	1	0.873822975517891	0	1.19838579499596	0.0606060606060606	0.532036613272311	0	tggcttgttttatcttggcaCtatcaaaaaggcaagttact	8	7	2	0	novel		TCGA-OR-A5KT-01A-11D-A29I-10	TCGA-OR-A5KT-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	062c82a9-f4e0-4eb0-adbc-3cb73423050d	35c2cd8b-80ce-4327-a1a3-f3ab82a32ccc	.	MTF2-92	NM_001164392	exon2	c.C194G	p.T65S	TTGGCACTATCAA	.	243	8	216	0	.	0	0	0	0	0	G	93575975	C	G	93575975	3	3	35	1	0	0	0	0	1	0	0	0	9951	565	20	3	200	3	MTF2	1	93575975	Missense_Mutation	SNP	C	TCGA-OR-A5KT-01A-11D-A29I-10	53677156	93575975	155674646	3	8255										
FMO5	2330	broad.mit.edu	37	chr1	146656097	146656097	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0487804878048781	4	1	0.873822975517891	0	1.19838579499596	0.0606060606060606	0.532036613272311	0	ctccttaggcccctttattcCgggacaatttctcagacttt	6	13	1	1	rs72708554		TCGA-OR-A5KT-01A-11D-A29I-10	TCGA-OR-A5KT-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	062c82a9-f4e0-4eb0-adbc-3cb73423050d	35c2cd8b-80ce-4327-a1a3-f3ab82a32ccc	.	FMO5-93	NM_001144829	exon9	c.G1369A	p.G457R	TTATTCCGGGACA	.	108	4	77	1	C|0.968;T|0.032	4	4	0	0	0	T	146656097	C	T	146656097	3	4	35	1	0	0	0	0	1	0	0	0	5977	661	23	1	29	1	FMO5	1	146656097	Missense_Mutation	SNP	C	TCGA-OR-A5KT-01A-11D-A29I-10	53080122	146656097	102594524	4	8256										
ACP6	51205	broad.mit.edu	37	chr1	147142085	147142085	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0487804878048781	4	1	0.873822975517891	0	1.19838579499596	0.0606060606060606	0.532036613272311	0	cctgcagctcggccagggccAcccgccgctggtgcaggcag	15	17	0	0	rs201678741		TCGA-OR-A5KT-01A-11D-A29I-10	TCGA-OR-A5KT-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	062c82a9-f4e0-4eb0-adbc-3cb73423050d	35c2cd8b-80ce-4327-a1a3-f3ab82a32ccc	.	ACP6-94	NM_016361	exon1	c.T86G	p.V29G	AGGGCCACCCGCC	.	96	26	35	6	.	4	3	1	0	0	C	147142085	A	C	147142085	3	2	35	1	0	0	0	0	1	0	0	0	165	159	6	5	1240	5	ACP6	1	147142085	Missense_Mutation	SNP	A	TCGA-OR-A5KT-01A-11D-A29I-10	485988	147142085	102108536	5	8257										
LOR	4014	hgsc.bcm.edu	37	chr1	153233701	153233701	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0487804878048781	4	1	0.873822975517891	0	1.19838579499596	0.0606060606060606	0.532036613272311	0	gggagcgtcaagtactccggAggcggcggctcctccggcgg	18	13	1	0	rs1143390	bycluster;byfrequency;by1000genomes	TCGA-OR-A5KT-01A-11D-A29I-10	TCGA-OR-A5KT-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	062c82a9-f4e0-4eb0-adbc-3cb73423050d	35c2cd8b-80ce-4327-a1a3-f3ab82a32ccc	.	LOR-90	NM_000427	exon2	c.A276C	p.G92G	CTCCGGAGGCGGC	.	5	5	0	0	A|0.594;C|0.406	0	0	0	0	0	C	153233701	A	C	153233701	2	2	35	1	0	0	0	0	0	0	0	1	8924	291	11	5		5	LOR	1	153233701	Silent	SNP	A	TCGA-OR-A5KT-01A-11D-A29I-10	6091616	153233701	96016920	6	8258										
TNN	63923	broad.mit.edu;bcgsc.ca	37	chr1	175048704	175048704	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0487804878048781	4	1	0.873822975517891	0	1.19838579499596	0.0606060606060606	0.532036613272311	0	cacggcgagtgcgtgcgcggCgtgtgccagtgccacgaaga	17	12	0	1	novel		TCGA-OR-A5KT-01A-11D-A29I-10	TCGA-OR-A5KT-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	062c82a9-f4e0-4eb0-adbc-3cb73423050d	35c2cd8b-80ce-4327-a1a3-f3ab82a32ccc	.	TNN-138	NM_022093	exon3	c.C645T	p.G215G	GCGCGGCGTGTGC	.	132	6	48	0	.	0	0	0	0	0	T	175048704	C	T	175048704	2	4	35	1	0	0	0	0	0	0	0	1	16360	755	27	1		1	TNN	1	175048704	Silent	SNP	C	TCGA-OR-A5KT-01A-11D-A29I-10	21815003	175048704	74201917	7	8259										
TOR3A	64222	hgsc.bcm.edu	37	chr1	179051300	179051300	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0487804878048781	4	1	0.873822975517891	0	1.19838579499596	0.0606060606060606	0.532036613272311	0	ggcgccagctttggctctttTtcctgctgctgctcccgggc	12	15	1	0	rs2296377	byfrequency	TCGA-OR-A5KT-01A-11D-A29I-10	TCGA-OR-A5KT-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	062c82a9-f4e0-4eb0-adbc-3cb73423050d	35c2cd8b-80ce-4327-a1a3-f3ab82a32ccc	.	TOR3A-90	NM_022371	exon1	c.T37C	p.F13L	CTCTTTTTCCTGC	.	4	4	0	0	T|0.229;C|0.771	0	0	0	0	0	C	179051300	T	C	179051300	3	2	35	1	0	0	0	0	1	0	0	0	16414	1841	64	4	39	4	TOR3A	1	179051300	Missense_Mutation	SNP	T	TCGA-OR-A5KT-01A-11D-A29I-10	4002596	179051300	70199321	8	8260										
C1orf106	55765	hgsc.bcm.edu	37	chr1	200880978	200880978	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0487804878048781	4	1	0.873822975517891	0	1.19838579499596	0.0606060606060606	0.532036613272311	0	cgcctggcgagtgggagctgCgccgcgcagccccgggccct	17	17	0	0	rs296520	byfrequency	TCGA-OR-A5KT-01A-11D-A29I-10	TCGA-OR-A5KT-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	062c82a9-f4e0-4eb0-adbc-3cb73423050d	35c2cd8b-80ce-4327-a1a3-f3ab82a32ccc	.	C1orf106-93	NM_018265	exon9	c.C1654T	p.R552C	GAGCTGCGCCGCG	.	8	8	0	0	C|0.242;T|0.758	0	0	0	0	0	T	200880978	C	T	200880978	3	4	35	1	0	0	0	0	1	0	0	0	1986	768	27	1	1646	1	C1orf106	1	200880978	Missense_Mutation	SNP	C	TCGA-OR-A5KT-01A-11D-A29I-10	21829678	200880978	48369643	9	8261										
KIAA1804	0	broad.mit.edu;bcgsc.ca	37	chr1	233515177	233515177	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0487804878048781	4	1	0.873822975517891	0	1.19838579499596	0.0606060606060606	0.532036613272311	0	tctccacaccttctttctccAcaaagtgcctgctgcagatg	6	15	3	1	novel		TCGA-OR-A5KT-01A-11D-A29I-10	TCGA-OR-A5KT-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	062c82a9-f4e0-4eb0-adbc-3cb73423050d	35c2cd8b-80ce-4327-a1a3-f3ab82a32ccc	.	KIAA1804-523	NM_032435	exon9	c.A2425T	p.T809S	TTCTCCACAAAGT	.	196	7	159	0	.	0	0	0	0	0	T	233515177	A	T	233515177	3	4	35	1	0	0	0	0	1	0	0	0	8280	159	6	5	2459	5	KIAA1804	1	233515177	Missense_Mutation	SNP	A	TCGA-OR-A5KT-01A-11D-A29I-10	32634199	233515177	15735444	10	8262										
SH3BP5L	80851	hgsc.bcm.edu	37	chr1	249106348	249106348	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0487804878048781	4	1	0.873822975517891	0	1.19838579499596	0.0606060606060606	0.532036613272311	0	tcctccagccccgcaccctcGgccccctcaatcccgctgtc	6	24	1	0	rs202116012		TCGA-OR-A5KT-01A-11D-A29I-10	TCGA-OR-A5KT-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	062c82a9-f4e0-4eb0-adbc-3cb73423050d	35c2cd8b-80ce-4327-a1a3-f3ab82a32ccc	.	SH3BP5L-90	NM_030645	exon7	c.C933G	p.A311A	ACCCTCGGCCCCC	.	17	4	0	0	G|0.991;C|0.008	7	7	0	0	0	C	249106348	G	C	249106348	2	2	35	1	0	0	0	0	0	0	0	1	14283	1103	39	2		2	SH3BP5L	1	249106348	Silent	SNP	G	TCGA-OR-A5KT-01A-11D-A29I-10	15591171	249106348	144273	11	8263										
GTF3C2	2976	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	27560194	27560194	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0487804878048781	4	1	0.873822975517891	0	1.19838579499596	0.0606060606060606	0.532036613272311	0	gacttctcctcctggggcagGtagggagcggcctcactggg	16	12	2	0	novel		TCGA-OR-A5KT-01A-11D-A29I-10	TCGA-OR-A5KT-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	062c82a9-f4e0-4eb0-adbc-3cb73423050d	35c2cd8b-80ce-4327-a1a3-f3ab82a32ccc	.	GTF3C2-92	NM_001521	exon8	c.T1044G	p.S348S	GGGCAGGTAGGGA	.	172	54	176	0	.	2	2	0	0	0	C	27560194	G	C	27560194	2	2	35	1	0	0	0	0	0	0	0	1	6894	1256	44	3		3	GTF3C2	2	27560194	Silent	SNP	G	TCGA-OR-A5KT-01A-11D-A29I-10		27560194	215639179	12	8264										
SCN1A	6323	broad.mit.edu;bcgsc.ca	37	chr2	166898935	166898935	+	Splice_Site	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0487804878048781	4	1	0.873822975517891	0	1.19838579499596	0.0606060606060606	0.532036613272311	0	tcagtttcagtggttgttccCtgtaaaaaaaaatgctaatg	8	6	2	0	novel		TCGA-OR-A5KT-01A-11D-A29I-10	TCGA-OR-A5KT-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	062c82a9-f4e0-4eb0-adbc-3cb73423050d	35c2cd8b-80ce-4327-a1a3-f3ab82a32ccc	.	SCN1A-147	NM_006920	exon13	c.2011-1G>T	.	TGTTCCCTGTAAA	.	108	5	97	0	.	0	0	0	0	0	A	166898935	C	A	166898935	5	1	35	1	0	0	0	0	0	0	1	0	13949	695	24	3	4046	3	SCN1A	2	166898935	Splice_Site	SNP	C	TCGA-OR-A5KT-01A-11D-A29I-10	139338741	166898935	76300438	13	8265										
TRPM8	79054	broad.mit.edu	37	chr2	234858625	234858625	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0487804878048781	4	1	0.873822975517891	0	1.19838579499596	0.0606060606060606	0.532036613272311	0	tccatcaaaaataaaattccTtgtgtggtggtggaaggctc	10	7	1	0	novel		TCGA-OR-A5KT-01A-11D-A29I-10	TCGA-OR-A5KT-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	062c82a9-f4e0-4eb0-adbc-3cb73423050d	35c2cd8b-80ce-4327-a1a3-f3ab82a32ccc	.	TRPM8-94	NM_024080	exon9	c.T975C	p.P325P	AATTCCTTGTGTG	.	106	8	77	0	.	0	0	0	0	0	C	234858625	T	C	234858625	2	2	35	1	0	0	0	0	0	0	0	1	16630	1596	56	4		4	TRPM8	2	234858625	Silent	SNP	T	TCGA-OR-A5KT-01A-11D-A29I-10	67959690	234858625	8340748	14	8266										
SLC6A11	6538	bcgsc.ca	37	chr3	10967739	10967739	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0487804878048781	4	1	0.873822975517891	0	1.19838579499596	0.0606060606060606	0.532036613272311	0	aaggcggtcaccatgatgccTctctccccgctgtgggccac	11	16	2	1	rs2272395	byfrequency	TCGA-OR-A5KT-01A-11D-A29I-10	TCGA-OR-A5KT-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	062c82a9-f4e0-4eb0-adbc-3cb73423050d	35c2cd8b-80ce-4327-a1a3-f3ab82a32ccc	.	SLC6A11-132	NM_014229	exon9	c.T1170C	p.P390P	GATGCCTCTCTCC	.	104	5	134	1	T|0.591;C|0.409	0	0	0	0	0	C	10967739	T	C	10967739	2	2	35	1	0	0	0	0	0	0	0	1	14709	1538	54	4		4	SLC6A11	3	10967739	Silent	SNP	T	TCGA-OR-A5KT-01A-11D-A29I-10		10967739	187054691	15	8267										
SLC6A1	6529	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	11072862	11072862	+	Splice_Site	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0487804878048781	4	1	0.873822975517891	0	1.19838579499596	0.0606060606060606	0.532036613272311	0	tcacctcttttcatcttgcaGgggggtatttatgtcttcaa	8	9	6	0	novel		TCGA-OR-A5KT-01A-11D-A29I-10	TCGA-OR-A5KT-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	062c82a9-f4e0-4eb0-adbc-3cb73423050d	35c2cd8b-80ce-4327-a1a3-f3ab82a32ccc	.	SLC6A1-92	NM_003042	exon13	c.1324-1G>T	.	CTTGCAGGGGGGT	.	65	28	72	0	.	0	0	0	0	0	T	11072862	G	T	11072862	5	4	35	1	0	0	0	0	0	0	1	0	14708	1014	35	3	1365	3	SLC6A1	3	11072862	Splice_Site	SNP	G	TCGA-OR-A5KT-01A-11D-A29I-10	105123	11072862	186949568	16	8268										
PRICKLE2	166336	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	64133073	64133073	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0487804878048781	4	1	0.873822975517891	0	1.19838579499596	0.0606060606060606	0.532036613272311	0	ggggtctacgtcggctgacaGccggttagaactcacttgca	13	11	2	2	novel		TCGA-OR-A5KT-01A-11D-A29I-10	TCGA-OR-A5KT-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	062c82a9-f4e0-4eb0-adbc-3cb73423050d	35c2cd8b-80ce-4327-a1a3-f3ab82a32ccc	.	PRICKLE2-95	NM_198859	exon7	c.C1093T	p.L365L	CTGACAGCCGGTT	.	107	30	108	0	.	0	0	0	0	0	A	64133073	G	A	64133073	2	1	35	1	0	0	0	0	0	0	0	1	12519	962	34	3		3	PRICKLE2	3	64133073	Silent	SNP	G	TCGA-OR-A5KT-01A-11D-A29I-10	53060211	64133073	133889357	17	8269										
TIPARP	25976	broad.mit.edu	37	chr3	156395550	156395550	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0487804878048781	4	1	0.873822975517891	0	1.19838579499596	0.0606060606060606	0.532036613272311	0	agcctccctctcctcctgatGacttttcatgccaaatgaga	6	14	2	3	novel		TCGA-OR-A5KT-01A-11D-A29I-10	TCGA-OR-A5KT-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	062c82a9-f4e0-4eb0-adbc-3cb73423050d	35c2cd8b-80ce-4327-a1a3-f3ab82a32ccc	.	TIPARP-523	NM_015508	exon2	c.G64A	p.D22N	CCTGATGACTTTT	.	57	4	48	0	.	0	0	0	0	0	A	156395550	G	A	156395550	3	1	35	1	0	0	0	0	1	0	0	0	15961	1290	45	3	66	3	TIPARP	3	156395550	Missense_Mutation	SNP	G	TCGA-OR-A5KT-01A-11D-A29I-10	92262477	156395550	41626880	18	8270										
CRMP1	1400	hgsc.bcm.edu	37	chr4	5894586	5894586	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0487804878048781	4	1	0.873822975517891	0	1.19838579499596	0.0606060606060606	0.532036613272311	0	tcgtaggcgccctccaccgcGgcgaacatgccgccgtactt	11	17	0	0	rs143304363		TCGA-OR-A5KT-01A-11D-A29I-10	TCGA-OR-A5KT-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	062c82a9-f4e0-4eb0-adbc-3cb73423050d	35c2cd8b-80ce-4327-a1a3-f3ab82a32ccc	.	CRMP1-92	NM_001014809	exon1	c.C111T	p.A37A	CACCGCGGCGAAC	.	9	6	0	0	G|0.946;A|0.054	0	0	0	0	0	A	5894586	G	A	5894586	2	1	35	1	0	0	0	0	0	0	0	1	3896	1103	39	1		1	CRMP1	4	5894586	Silent	SNP	G	TCGA-OR-A5KT-01A-11D-A29I-10		5894586	185259690	19	8271										
JAKMIP1	152789	broad.mit.edu	37	chr4	6087227	6087227	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0487804878048781	4	1	0.873822975517891	0	1.19838579499596	0.0606060606060606	0.532036613272311	0	actgtggtgccgctcggcctCcttgacctgaaccagctgct	11	15	0	2	novel		TCGA-OR-A5KT-01A-11D-A29I-10	TCGA-OR-A5KT-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	062c82a9-f4e0-4eb0-adbc-3cb73423050d	35c2cd8b-80ce-4327-a1a3-f3ab82a32ccc	.	JAKMIP1-292	NM_001099433	exon4	c.G754A	p.E252K	CGGCCTCCTTGAC	.	82	3	94	0	.	0	0	0	0	0	T	6087227	C	T	6087227	3	4	35	1	0	0	0	0	1	0	0	0	7961	864	30	3	1888	3	JAKMIP1	4	6087227	Missense_Mutation	SNP	C	TCGA-OR-A5KT-01A-11D-A29I-10	192641	6087227	185067049	20	8272										
ALPK1	80216	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr4	113352982	113352982	+	Frame_Shift_Del	DEL	G	G	-													0.0487804878048781	4	1	0.873822975517891	0	1.19838579499596	0.0606060606060606	0.532036613272311	0	caactgcgatgtcaaagacaGgcaggggaaagagcagggag					novel		TCGA-OR-A5KT-01A-11D-A29I-10	TCGA-OR-A5KT-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	062c82a9-f4e0-4eb0-adbc-3cb73423050d	35c2cd8b-80ce-4327-a1a3-f3ab82a32ccc	.	ALPK1-337	NM_001102406	exon11	c.2279delG	p.R760fs	AAGACAGGCAGGG	.	51	16	31	0	.	0	0	0	0	0	-	113352982	G	-	113352982	7	5	35	1	0	1	0	1	0	0	0	0	544	1000	35	0	2313	0	ALPK1	4	113352982	Frame_Shift_Del	DEL	G	TCGA-OR-A5KT-01A-11D-A29I-10	107265755	113352982	77801294	21	8273										
IL2	3558	broad.mit.edu	37	chr4	123374962	123374962	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0487804878048781	4	1	0.873822975517891	0	1.19838579499596	0.0606060606060606	0.532036613272311	0	aatttagcacttcctccagaGgtttgagttcttcttctaga	7	9	3	3	novel		TCGA-OR-A5KT-01A-11D-A29I-10	TCGA-OR-A5KT-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	062c82a9-f4e0-4eb0-adbc-3cb73423050d	35c2cd8b-80ce-4327-a1a3-f3ab82a32ccc	.	IL2-659	NM_000586	exon3	c.C254A	p.P85H	TCCAGAGGTTTGA	.	101	4	79	0	.	0	0	0	0	0	T	123374962	G	T	123374962	3	4	35	1	0	0	0	0	1	0	0	0	7687	1000	35	3	215	3	IL2	4	123374962	Missense_Mutation	SNP	G	TCGA-OR-A5KT-01A-11D-A29I-10	10021980	123374962	67779314	22	8274										
SRD5A1	6715	bcgsc.ca	37	chr5	6652009	6652009	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0487804878048781	4	1	0.873822975517891	0	1.19838579499596	0.0606060606060606	0.532036613272311	0	aagcctatgccactgttggcGtgtacaatggcgattatgtt	11	8	0	0	rs8192186	byfrequency	TCGA-OR-A5KT-01A-11D-A29I-10	TCGA-OR-A5KT-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	062c82a9-f4e0-4eb0-adbc-3cb73423050d	35c2cd8b-80ce-4327-a1a3-f3ab82a32ccc	.	SRD5A1-90	NM_001047	exon2	c.G348A	p.A116A	GTTGGCGTGTACA	.	214	7	191	0	G|0.652;A|0.348	2	2	0	0	0	A	6652009	G	A	6652009	2	1	35	1	0	0	0	0	0	0	0	1	15175	1132	40	1		1	SRD5A1	5	6652009	Silent	SNP	G	TCGA-OR-A5KT-01A-11D-A29I-10		6652009	174263251	23	8275										
TCERG1	10915	hgsc.bcm.edu	37	chr5	145838662	145838662	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0487804878048781	4	1	0.873822975517891	0	1.19838579499596	0.0606060606060606	0.532036613272311	0	caggcccaggcccaggcccaGgcccaggcccaagcccaagc	12	20	0	0	novel		TCGA-OR-A5KT-01A-11D-A29I-10	TCGA-OR-A5KT-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	062c82a9-f4e0-4eb0-adbc-3cb73423050d	35c2cd8b-80ce-4327-a1a3-f3ab82a32ccc	.	TCERG1-92	NM_006706	exon4	c.G654A	p.Q218Q	GGCCCAGGCCCAG	.	76	14	22	0	.	0	0	0	0	0	A	145838662	G	A	145838662	2	1	35	1	0	0	0	0	0	0	0	1	15722	991	35	3		3	TCERG1	5	145838662	Silent	SNP	G	TCGA-OR-A5KT-01A-11D-A29I-10	139186653	145838662	35076598	24	8276										
SLC36A2	153201	bcgsc.ca	37	chr5	150723806	150723806	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0487804878048781	4	1	0.873822975517891	0	1.19838579499596	0.0606060606060606	0.532036613272311	0	gcccatgttgcctttcaccaGgtgaatcaaggcctggaaca	10	12	2	1	rs192192	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-OR-A5KT-01A-11D-A29I-10	TCGA-OR-A5KT-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	062c82a9-f4e0-4eb0-adbc-3cb73423050d	35c2cd8b-80ce-4327-a1a3-f3ab82a32ccc	.	SLC36A2-91	NM_181776	exon2	c.C187T	p.L63L	TCACCAGGTGAAT	.	221	7	198	1	G|0.470;A|0.530	0	0	0	0	0	A	150723806	G	A	150723806	2	1	35	1	0	0	0	0	0	0	0	1	14629	991	35	3		3	SLC36A2	5	150723806	Silent	SNP	G	TCGA-OR-A5KT-01A-11D-A29I-10	4885144	150723806	30191454	25	8277										
DOCK2	1794	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr5	169482342	169482342	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0487804878048781	4	1	0.873822975517891	0	1.19838579499596	0.0606060606060606	0.532036613272311	0	cactgtccagcctgtcttggAtgaacatcccaggttcaaga	9	12	2	2	novel		TCGA-OR-A5KT-01A-11D-A29I-10	TCGA-OR-A5KT-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	062c82a9-f4e0-4eb0-adbc-3cb73423050d	35c2cd8b-80ce-4327-a1a3-f3ab82a32ccc	.	DOCK2-97	NM_004946	exon42	c.A4247T	p.D1416V	TCTTGGATGAACA	.	125	9	131	0	.	1	1	0	0	0	T	169482342	A	T	169482342	3	4	35	1	0	0	0	0	1	0	0	0	4698	333	12	5	4413	5	DOCK2	5	169482342	Missense_Mutation	SNP	A	TCGA-OR-A5KT-01A-11D-A29I-10	18758536	169482342	11432918	26	8278										
BTNL3	10917	bcgsc.ca	37	chr5	180432564	180432564	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0487804878048781	4	1	0.873822975517891	0	1.19838579499596	0.0606060606060606	0.532036613272311	0	gtcgggatgacgtagacaggGggaagaacaatgtgactttg	16	5	0	4	rs73815153	byfrequency	TCGA-OR-A5KT-01A-11D-A29I-10	TCGA-OR-A5KT-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	062c82a9-f4e0-4eb0-adbc-3cb73423050d	35c2cd8b-80ce-4327-a1a3-f3ab82a32ccc	.	.	NM_197975	exon8	c.G1093T	p.G365W	GACAGGGGGAAGA	.	254	9	285	1	G|0.927;T|0.073	0	0	0	0	0	T	180432564	G	T	180432564	3	4	35	1	0	0	0	0	1	0	0	0	1569	1232	43	3	1123	3	BTNL3	5	180432564	Missense_Mutation	SNP	G	TCGA-OR-A5KT-01A-11D-A29I-10	10950222	180432564	482696	27	8279										
SKIV2L	6499	broad.mit.edu;bcgsc.ca	37	chr6	31935101	31935101	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0487804878048781	4	1	0.873822975517891	0	1.19838579499596	0.0606060606060606	0.532036613272311	0	agtctctctcagcaggaaggGtggtggttgtgaagaatcag	15	6	3	2	novel		TCGA-OR-A5KT-01A-11D-A29I-10	TCGA-OR-A5KT-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	062c82a9-f4e0-4eb0-adbc-3cb73423050d	35c2cd8b-80ce-4327-a1a3-f3ab82a32ccc	.	SKIV2L-290	NM_006929	exon21	c.G2530A	p.V844M	GGAAGGGTGGTGG	.	232	11	377	0	.	7	6	1	0	0	A	31935101	G	A	31935101	3	1	35	1	0	0	0	0	1	0	0	0	14394	1261	44	3	2612	3	SKIV2L	6	31935101	Missense_Mutation	SNP	G	TCGA-OR-A5KT-01A-11D-A29I-10		31935101	139179966	28	8280										
DST	667	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr6	56482929	56482929	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0487804878048781	4	1	0.873822975517891	0	1.19838579499596	0.0606060606060606	0.532036613272311	0	ggtttgtctcatcaaaagttAtctgtaactcggtgcttgtc	9	8	3	0	novel		TCGA-OR-A5KT-01A-11D-A29I-10	TCGA-OR-A5KT-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	062c82a9-f4e0-4eb0-adbc-3cb73423050d	35c2cd8b-80ce-4327-a1a3-f3ab82a32ccc	.	DST-523	NM_001723	exon23	c.T5903A	p.I1968K	AAAGTTATCTGTA	.	134	10	88	0	.	0	0	0	0	0	T	56482929	A	T	56482929	3	4	35	1	0	0	0	0	1	0	0	0	4794	449	16	5	14500	5	DST	6	56482929	Missense_Mutation	SNP	A	TCGA-OR-A5KT-01A-11D-A29I-10	24547828	56482929	114632138	29	8281										
EEF1A1	1915	broad.mit.edu;bcgsc.ca	37	chr6	74228257	74228257	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0487804878048781	4	1	0.873822975517891	0	1.19838579499596	0.0606060606060606	0.532036613272311	0	tttacttccgttgtaacgttGactggagcaaaggtgaccac	10	9	0	2	novel		TCGA-OR-A5KT-01A-11D-A29I-10	TCGA-OR-A5KT-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	062c82a9-f4e0-4eb0-adbc-3cb73423050d	35c2cd8b-80ce-4327-a1a3-f3ab82a32ccc	.	EEF1A1-226	NM_001402	exon6	c.C849T	p.V283V	AACGTTGACTGGA	.	745	17	744	1	.	7053	6928	117	1	7	A	74228257	G	A	74228257	2	1	35	1	0	0	0	0	0	0	0	1	4934	1277	45	3		3	EEF1A1	6	74228257	Silent	SNP	G	TCGA-OR-A5KT-01A-11D-A29I-10	17745328	74228257	96886810	30	8282										
IMPG1	3617	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	76633419	76633419	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0487804878048781	4	1	0.873822975517891	0	1.19838579499596	0.0606060606060606	0.532036613272311	0	ttgattttcagagtgatctgGcaacctacaaaagaaagcaa	8	7	2	4	novel		TCGA-OR-A5KT-01A-11D-A29I-10	TCGA-OR-A5KT-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	062c82a9-f4e0-4eb0-adbc-3cb73423050d	35c2cd8b-80ce-4327-a1a3-f3ab82a32ccc	.	IMPG1-93	NM_001563	exon16	c.C2248G	p.P750A	GATCTGGCAACCT	.	26	10	32	0	.	0	0	0	0	0	C	76633419	G	C	76633419	3	2	35	1	0	0	0	0	1	0	0	0	7749	1203	42	3	153	3	IMPG1	6	76633419	Missense_Mutation	SNP	G	TCGA-OR-A5KT-01A-11D-A29I-10	2405162	76633419	94481648	31	8283										
POU3F2	5454	hgsc.bcm.edu	37	chr6	99283376	99283376	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0487804878048781	4	1	0.873822975517891	0	1.19838579499596	0.0606060606060606	0.532036613272311	0	gccggcgggcagccggccggTctgcaccaccacggcctgcg	16	18	1	0	rs195860		TCGA-OR-A5KT-01A-11D-A29I-10	TCGA-OR-A5KT-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	062c82a9-f4e0-4eb0-adbc-3cb73423050d	35c2cd8b-80ce-4327-a1a3-f3ab82a32ccc	.	POU3F2-90	NM_005604	exon1	c.T627G	p.G209G	GGCCGGTCTGCAC	.	9	4	0	0	T|0.089;G|0.911	0	0	0	0	0	G	99283376	T	G	99283376	2	3	35	1	0	0	0	0	0	0	0	1	12304	1654	58	5		5	POU3F2	6	99283376	Silent	SNP	T	TCGA-OR-A5KT-01A-11D-A29I-10	22649957	99283376	71831691	32	8284										
TCP10L2	401285	broad.mit.edu	37	chr6	167592576	167592576	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0487804878048781	4	1	0.873822975517891	0	1.19838579499596	0.0606060606060606	0.532036613272311	0	caggcttcccaggccgccacGctgcaggagcagacggcagc	14	16	0	1	rs60976240	byfrequency	TCGA-OR-A5KT-01A-11D-A29I-10	TCGA-OR-A5KT-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	062c82a9-f4e0-4eb0-adbc-3cb73423050d	35c2cd8b-80ce-4327-a1a3-f3ab82a32ccc	.	.	NM_001145121	exon6	c.G735A	p.T245T	CGCCACGCTGCAG	.	85	4	100	2	G|0.425;A|0.575	0	0	0	0	0	A	167592576	G	A	167592576	2	1	35	1	0	0	0	0	0	0	0	1	15749	1074	38	1		1	TCP10L2	6	167592576	Silent	SNP	G	TCGA-OR-A5KT-01A-11D-A29I-10	68309200	167592576	3522491	33	8285										
GARS	2617	hgsc.bcm.edu	37	chr7	30634661	30634661	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0487804878048781	4	1	0.873822975517891	0	1.19838579499596	0.0606060606060606	0.532036613272311	0	ccctcagcgcggcctcctgcCccccgatctccttgcccgcc	8	24	2	0	rs1049402	byfrequency	TCGA-OR-A5KT-01A-11D-A29I-10	TCGA-OR-A5KT-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	062c82a9-f4e0-4eb0-adbc-3cb73423050d	35c2cd8b-80ce-4327-a1a3-f3ab82a32ccc	.	GARS-91	NM_002047	exon1	c.C124G	p.P42A	TCCTGCCCCCCGA	.	9	9	0	0	C|0.329;G|0.671	1	0	1	0	0	G	30634661	C	G	30634661	3	3	35	1	0	0	0	0	1	0	0	0	6262	623	22	3	126	3	GARS	7	30634661	Missense_Mutation	SNP	C	TCGA-OR-A5KT-01A-11D-A29I-10		30634661	128504002	34	8286										
AMPH	273	bcgsc.ca	37	chr7	38431436	38431436	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0487804878048781	4	1	0.873822975517891	0	1.19838579499596	0.0606060606060606	0.532036613272311	0	cccatggctggtgcagaaggCgtgggctgagggtcctggat	18	9	0	2	rs1058656	byfrequency	TCGA-OR-A5KT-01A-11D-A29I-10	TCGA-OR-A5KT-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	062c82a9-f4e0-4eb0-adbc-3cb73423050d	35c2cd8b-80ce-4327-a1a3-f3ab82a32ccc	.	AMPH-95	NM_001635	exon19	c.G1791A	p.T597T	AGAAGGCGTGGGC	.	65	4	56	0	C|0.804;T|0.196	1	1	0	0	0	T	38431436	C	T	38431436	2	4	35	1	0	0	0	0	0	0	0	1	588	755	27	1		1	AMPH	7	38431436	Silent	SNP	C	TCGA-OR-A5KT-01A-11D-A29I-10	7796775	38431436	120707227	35	8287										
ANKIB1	54467	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	91974336	91974336	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0487804878048781	4	1	0.873822975517891	0	1.19838579499596	0.0606060606060606	0.532036613272311	0	tctgtatttgaagaccctgtGgatatgccctgtggacatga	11	8	1	3	novel		TCGA-OR-A5KT-01A-11D-A29I-10	TCGA-OR-A5KT-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	062c82a9-f4e0-4eb0-adbc-3cb73423050d	35c2cd8b-80ce-4327-a1a3-f3ab82a32ccc	.	ANKIB1-432	NM_019004	exon7	c.G1041A	p.V347V	CCCTGTGGATATG	.	179	56	175	0	.	0	0	0	0	0	A	91974336	G	A	91974336	2	1	35	1	0	0	0	0	0	0	0	1	630	1335	47	3		3	ANKIB1	7	91974336	Silent	SNP	G	TCGA-OR-A5KT-01A-11D-A29I-10	53542900	91974336	67164327	36	8288										
TTC26	79989	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	138872237	138872237	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0487804878048781	4	1	0.873822975517891	0	1.19838579499596	0.0606060606060606	0.532036613272311	0	atattgggaaggcaaacgggGtgcctgtgtgggcattttcc	15	7	0	0	novel		TCGA-OR-A5KT-01A-11D-A29I-10	TCGA-OR-A5KT-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	062c82a9-f4e0-4eb0-adbc-3cb73423050d	35c2cd8b-80ce-4327-a1a3-f3ab82a32ccc	.	TTC26-91	NM_024926	exon17	c.G1505C	p.G502A	AACGGGGTGCCTG	.	154	48	125	0	.	1	0	1	0	0	C	138872237	G	C	138872237	3	2	35	1	0	0	0	0	1	0	0	0	16732	1261	44	3	1571	3	TTC26	7	138872237	Missense_Mutation	SNP	G	TCGA-OR-A5KT-01A-11D-A29I-10	46897901	138872237	20266426	37	8289										
MSR1	4481	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr8	15967636	15967636	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0487804878048781	4	1	0.873822975517891	0	1.19838579499596	0.0606060606060606	0.532036613272311	0	gcatcttcagaatgtgaacaGgctcttgtcccccattgccg	9	13	3	2	novel		TCGA-OR-A5KT-01A-11D-A29I-10	TCGA-OR-A5KT-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	062c82a9-f4e0-4eb0-adbc-3cb73423050d	35c2cd8b-80ce-4327-a1a3-f3ab82a32ccc	.	MSR1-91	NM_138715	exon10	c.C1314G	p.A438A	TGAACAGGCTCTT	.	81	25	61	0	.	1	1	0	0	0	C	15967636	G	C	15967636	2	2	35	1	0	0	0	0	0	0	0	1	9914	987	35	3		3	MSR1	8	15967636	Silent	SNP	G	TCGA-OR-A5KT-01A-11D-A29I-10		15967636	130396386	38	8290										
ASAP1	50807	broad.mit.edu	37	chr8	131172197	131172197	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0487804878048781	4	1	0.873822975517891	0	1.19838579499596	0.0606060606060606	0.532036613272311	0	gcatgctgtatcctccttgcCggctctgagaatcctaggaa	10	12	1	1	novel		TCGA-OR-A5KT-01A-11D-A29I-10	TCGA-OR-A5KT-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	062c82a9-f4e0-4eb0-adbc-3cb73423050d	35c2cd8b-80ce-4327-a1a3-f3ab82a32ccc	.	ASAP1-95	NM_018482	exon12	c.G923A	p.R308Q	CCTTGCCGGCTCT	.	63	3	77	0	.	0	0	0	0	0	T	131172197	C	T	131172197	3	4	35	1	0	0	0	0	1	0	0	0	1011	652	23	1	2542	1	ASAP1	8	131172197	Missense_Mutation	SNP	C	TCGA-OR-A5KT-01A-11D-A29I-10	115204561	131172197	15191825	39	8291										
ALG2	85365	ucsc.edu	37	chr9	101980798	101980798	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0487804878048781	4	1	0.873822975517891	0	1.19838579499596	0.0606060606060606	0.532036613272311	0	gagagcagcaggaattttttCcccttggggactaggtcatc	12	9	1	1	novel		TCGA-OR-A5KT-01A-11D-A29I-10	TCGA-OR-A5KT-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	062c82a9-f4e0-4eb0-adbc-3cb73423050d	35c2cd8b-80ce-4327-a1a3-f3ab82a32ccc	.	ALG2-92	NM_033087	exon2	c.G669A	p.G223G	TTTTTTCCCCTTG	.	110	1	108	0	.	19	18	1	0	0	T	101980798	C	T	101980798	2	4	35	1	0	0	0	0	0	0	0	1	519	842	30	3		3	ALG2	9	101980798	Silent	SNP	C	TCGA-OR-A5KT-01A-11D-A29I-10		101980798	39232633	40	8292										
MAT1A	4143	bcgsc.ca	37	chr10	82033594	82033594	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0487804878048781	4	1	0.873822975517891	0	1.19838579499596	0.0606060606060606	0.532036613272311	0	tcgcttcttccgaaatggccGtagcatgctgtcttctggta	10	11	3	0	rs2993763	byfrequency	TCGA-OR-A5KT-01A-11D-A29I-10	TCGA-OR-A5KT-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	062c82a9-f4e0-4eb0-adbc-3cb73423050d	35c2cd8b-80ce-4327-a1a3-f3ab82a32ccc	.	MAT1A-90	NM_000429	exon9	c.C1131T	p.Y377Y	ATGGCCGTAGCAT	.	228	8	211	0	G|0.458;A|0.542	0	0	0	0	0	A	82033594	G	A	82033594	2	1	35	1	0	0	0	0	0	0	0	1	9357	1140	40	1		1	MAT1A	10	82033594	Silent	SNP	G	TCGA-OR-A5KT-01A-11D-A29I-10		82033594	53501153	41	8293										
GPAM	57678	broad.mit.edu	37	chr10	113924347	113924347	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0487804878048781	4	1	0.873822975517891	0	1.19838579499596	0.0606060606060606	0.532036613272311	0	tagagcagacaccggtttctGactttggctttctaaatatt	8	8	2	3	rs144558318	alternate_allele	TCGA-OR-A5KT-01A-11D-A29I-10	TCGA-OR-A5KT-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	062c82a9-f4e0-4eb0-adbc-3cb73423050d	35c2cd8b-80ce-4327-a1a3-f3ab82a32ccc	.	GPAM-92	NM_001244949	exon13	c.C1243T	p.Q415X	GTTTCTGACTTTG	.	79	5	56	0	G|1.000;T|0.000	0	0	0	0	0	A	113924347	G	A	113924347	4	1	35	1	0	0	0	0	0	1	0	0	6608	1299	45	3	1283	3	GPAM	10	113924347	Nonsense_Mutation	SNP	G	TCGA-OR-A5KT-01A-11D-A29I-10	31890753	113924347	21610400	42	8294										
FANK1	92565	hgsc.bcm.edu	37	chr10	127585221	127585221	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0487804878048781	4	1	0.873822975517891	0	1.19838579499596	0.0606060606060606	0.532036613272311	0	agcagccgaccatggagcccCagagtaagggaggcccgggc	16	13	0	1	rs202109621		TCGA-OR-A5KT-01A-11D-A29I-10	TCGA-OR-A5KT-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	062c82a9-f4e0-4eb0-adbc-3cb73423050d	35c2cd8b-80ce-4327-a1a3-f3ab82a32ccc	.	FANK1-91	NM_145235	exon1	c.C10T	p.Q4X	GAGCCCCAGAGTA	.	85	9	18	0	.	0	0	0	0	0	T	127585221	C	T	127585221	4	4	35	1	0	0	0	0	0	1	0	0	5691	595	21	3	12	3	FANK1	10	127585221	Nonsense_Mutation	SNP	C	TCGA-OR-A5KT-01A-11D-A29I-10	13660874	127585221	7949526	43	8295										
SOX6	55553	broad.mit.edu	37	chr11	15994582	15994582	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0487804878048781	4	1	0.873822975517891	0	1.19838579499596	0.0606060606060606	0.532036613272311	0	agatgtcatctgaggcgatgGtgtggtagttgccatagtga	15	5	2	3	novel		TCGA-OR-A5KT-01A-11D-A29I-10	TCGA-OR-A5KT-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	062c82a9-f4e0-4eb0-adbc-3cb73423050d	35c2cd8b-80ce-4327-a1a3-f3ab82a32ccc	.	SOX6-93	NM_001145819	exon16	c.C2299A	p.P767T	GCGATGGTGTGGT	.	105	4	144	0	.	0	0	0	0	0	T	15994582	G	T	15994582	3	4	35	1	0	0	0	0	1	0	0	0	14990	1261	44	3	230	3	SOX6	11	15994582	Missense_Mutation	SNP	G	TCGA-OR-A5KT-01A-11D-A29I-10		15994582	119011934	44	8296										
TMEM134	80194	broad.mit.edu	37	chr11	67235051	67235051	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0487804878048781	4	1	0.873822975517891	0	1.19838579499596	0.0606060606060606	0.532036613272311	0	ggagctgcggatggaagttcGgctggaatccctgccaggac	16	10	0	0	rs143199541	byfrequency	TCGA-OR-A5KT-01A-11D-A29I-10	TCGA-OR-A5KT-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	062c82a9-f4e0-4eb0-adbc-3cb73423050d	35c2cd8b-80ce-4327-a1a3-f3ab82a32ccc	.	TMEM134-90	NM_025124	exon3	c.C250T	p.R84X	AAGTTCGGCTGGA	.	171	4	146	1	G|0.997;A|0.003	0	0	0	0	0	A	67235051	G	A	67235051	4	1	35	1	0	0	0	0	0	1	0	0	16087	1124	39	1	357	1	TMEM134	11	67235051	Nonsense_Mutation	SNP	G	TCGA-OR-A5KT-01A-11D-A29I-10	51240469	67235051	67771465	45	8297										
KRTAP5-10	387273	bcgsc.ca	37	chr11	71276951	71276951	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0487804878048781	4	1	0.873822975517891	0	1.19838579499596	0.0606060606060606	0.532036613272311	0	tccaaggggggctgtggttcTtgtgggggctccaagggggg	21	7	1	0	rs76397897	byfrequency	TCGA-OR-A5KT-01A-11D-A29I-10	TCGA-OR-A5KT-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	062c82a9-f4e0-4eb0-adbc-3cb73423050d	35c2cd8b-80ce-4327-a1a3-f3ab82a32ccc	.	KRTAP5-10-91	NM_001012710	exon1	c.T318C	p.S106S	TGGTTCTTGTGGG	.	72	14	47	3	T|0.991;C|0.009	0	0	0	0	0	C	71276951	T	C	71276951	2	2	35	1	0	0	0	0	0	0	0	1	8581	1596	56	4		4	KRTAP5-10	11	71276951	Silent	SNP	T	TCGA-OR-A5KT-01A-11D-A29I-10	4041900	71276951	63729565	46	8298										
GRM5	2915	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	88386562	88386562	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0487804878048781	4	1	0.873822975517891	0	1.19838579499596	0.0606060606060606	0.532036613272311	0	gtcacatcatacctgtcagcCcagccatcactgtggggaaa	9	13	4	0	novel		TCGA-OR-A5KT-01A-11D-A29I-10	TCGA-OR-A5KT-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	062c82a9-f4e0-4eb0-adbc-3cb73423050d	35c2cd8b-80ce-4327-a1a3-f3ab82a32ccc	.	GRM5-949	NM_000842	exon4	c.G921C	p.W307C	GTCAGCCCAGCCA	.	29	12	35	0	.	0	0	0	0	0	G	88386562	C	G	88386562	3	3	35	1	0	0	0	0	1	0	0	0	6821	624	22	3	2745	3	GRM5	11	88386562	Missense_Mutation	SNP	C	TCGA-OR-A5KT-01A-11D-A29I-10	17109611	88386562	46619954	47	8299										
NCAPD2	9918	bcgsc.ca	37	chr12	6631169	6631169	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0487804878048781	4	1	0.873822975517891	0	1.19838579499596	0.0606060606060606	0.532036613272311	0	attacagaggccattggcatCatcagcaagatgatgtatga	10	7	2	4	rs917634	byfrequency	TCGA-OR-A5KT-01A-11D-A29I-10	TCGA-OR-A5KT-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	062c82a9-f4e0-4eb0-adbc-3cb73423050d	35c2cd8b-80ce-4327-a1a3-f3ab82a32ccc	.	NCAPD2-660	NM_014865	exon15	c.C1920A	p.I640I	TGGCATCATCAGC	.	105	5	111	0	C|0.475;A|0.525	2	2	0	0	0	A	6631169	C	A	6631169	2	1	35	1	0	0	0	0	0	0	0	1	10234	816	29	3		3	NCAPD2	12	6631169	Silent	SNP	C	TCGA-OR-A5KT-01A-11D-A29I-10		6631169	127220726	48	8300										
TAS2R30	259293	bcgsc.ca	37	chr12	11286164	11286164	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0487804878048781	4	1	0.873822975517891	0	1.19838579499596	0.0606060606060606	0.532036613272311	0	aggaggtcacagtttgcaaaGcttttatgtggaccttggtg	13	6	1	0	rs200661425		TCGA-OR-A5KT-01A-11D-A29I-10	TCGA-OR-A5KT-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	062c82a9-f4e0-4eb0-adbc-3cb73423050d	35c2cd8b-80ce-4327-a1a3-f3ab82a32ccc	.	.	NM_001097643	exon1	c.C680T	p.A227V	TGCAAAGCTTTTA	.	271	23	228	3	.	0	0	0	0	0	A	11286164	G	A	11286164	3	1	35	1	0	0	0	0	1	0	0	0	15610	971	34	3	283	3	TAS2R30	12	11286164	Missense_Mutation	SNP	G	TCGA-OR-A5KT-01A-11D-A29I-10	4654995	11286164	122565731	49	8301										
APOLD1	81575	hgsc.bcm.edu	37	chr12	12939892	12939892	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0487804878048781	4	1	0.873822975517891	0	1.19838579499596	0.0606060606060606	0.532036613272311	0	gcatgggcccgacgcgctgcGgcgcttccagggactgctgc	16	15	0	0	rs4763876		TCGA-OR-A5KT-01A-11D-A29I-10	TCGA-OR-A5KT-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	062c82a9-f4e0-4eb0-adbc-3cb73423050d	35c2cd8b-80ce-4327-a1a3-f3ab82a32ccc	.	APOLD1-91	NM_001130415	exon2	c.G146A	p.R49Q	CGCTGCGGCGCTT	.	10	6	0	0	G|0.943;A|0.057	0	0	0	0	0	A	12939892	G	A	12939892	3	1	35	1	0	0	0	0	1	0	0	0	811	1116	39	1	159	1	APOLD1	12	12939892	Missense_Mutation	SNP	G	TCGA-OR-A5KT-01A-11D-A29I-10	1653728	12939892	120912003	50	8302										
KRT7	3855	hgsc.bcm.edu	37	chr12	52627215	52627215	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0487804878048781	4	1	0.873822975517891	0	1.19838579499596	0.0606060606060606	0.532036613272311	0	ctctacggcctcggcgcctcAcggccgcgcgtggccgtgcg	15	18	2	0	rs7308888	byfrequency	TCGA-OR-A5KT-01A-11D-A29I-10	TCGA-OR-A5KT-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	062c82a9-f4e0-4eb0-adbc-3cb73423050d	35c2cd8b-80ce-4327-a1a3-f3ab82a32ccc	.	KRT7-90	NM_005556	exon1	c.A135G	p.S45S	CGCCTCACGGCCG	.	4	4	0	0	A|0.133;G|0.867	0	0	0	0	0	G	52627215	A	G	52627215	2	3	35	1	0	0	0	0	0	0	0	1	8504	146	6	4		4	KRT7	12	52627215	Silent	SNP	A	TCGA-OR-A5KT-01A-11D-A29I-10	39687323	52627215	81224680	51	8303										
KRT2	3849	hgsc.bcm.edu	37	chr12	53045632	53045633	+	In_Frame_Ins	INS	-	-	GCCTCCAAAGCCGCTGCC													0.0487804878048781	4	1	0.873822975517891	0	1.19838579499596	0.0606060606060606	0.532036613272311	0	ccacctccaaagctgctgccINSgcctccaaaaccacctcctc					novel		TCGA-OR-A5KT-01A-11D-A29I-10	TCGA-OR-A5KT-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	062c82a9-f4e0-4eb0-adbc-3cb73423050d	35c2cd8b-80ce-4327-a1a3-f3ab82a32ccc	.	KRT2-92	NM_000423	exon1	c.295_296insGGCAGCGGCTTTGGAGGC	p.G99delinsGSGFGGG	TGCTGCCGCCTCC	.	549	190	149	0	.	0	0	0	0	0	GCCTCCAAAGCCGCTGCC	53045633	-	GCCTCCAAAGCCGCTGCC	53045632	7	5	35	1	0	1	1	0	0	0	0	0	8478	652	23	0	1660	0	KRT2	12	53045632	In_Frame_Ins	INS	-	TCGA-OR-A5KT-01A-11D-A29I-10	418417	53045632	80806263	52	8304										
TMTC2	160335	broad.mit.edu;bcgsc.ca	37	chr12	83290354	83290354	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0487804878048781	4	1	0.873822975517891	0	1.19838579499596	0.0606060606060606	0.532036613272311	0	tttttatggactcaagactgCgatcaggaatggagactggc	12	7	2	2	novel		TCGA-OR-A5KT-01A-11D-A29I-10	TCGA-OR-A5KT-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	062c82a9-f4e0-4eb0-adbc-3cb73423050d	35c2cd8b-80ce-4327-a1a3-f3ab82a32ccc	.	TMTC2-92	NM_152588	exon3	c.C1412G	p.A471G	AGACTGCGATCAG	.	182	9	63	0	.	0	0	0	0	0	G	83290354	C	G	83290354	3	3	35	1	0	0	0	0	1	0	0	0	16298	768	27	2	1422	2	TMTC2	12	83290354	Missense_Mutation	SNP	C	TCGA-OR-A5KT-01A-11D-A29I-10	30244722	83290354	50561541	53	8305										
DAO	1610	broad.mit.edu	37	chr12	109293174	109293174	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0487804878048781	4	1	0.873822975517891	0	1.19838579499596	0.0606060606060606	0.532036613272311	0	atgcaagaattattggtgaaCgaactggcttccggccagta	11	8	0	2	novel		TCGA-OR-A5KT-01A-11D-A29I-10	TCGA-OR-A5KT-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	062c82a9-f4e0-4eb0-adbc-3cb73423050d	35c2cd8b-80ce-4327-a1a3-f3ab82a32ccc	.	DAO-92	NM_001917	exon10	c.C835T	p.R279X	GGTGAACGAACTG	.	68	5	79	1	.	0	0	0	0	0	T	109293174	C	T	109293174	4	4	35	1	0	0	0	0	0	1	0	0	4237	528	19	1	869	1	DAO	12	109293174	Nonsense_Mutation	SNP	C	TCGA-OR-A5KT-01A-11D-A29I-10	26002820	109293174	24558721	54	8306										
ATXN2	6311	hgsc.bcm.edu	37	chr12	112036797	112036797	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0487804878048781	4	1	0.873822975517891	0	1.19838579499596	0.0606060606060606	0.532036613272311	0	tgctgttgctgctgctgctgCtgctgctgctgctgctgctg	14	12	0	0	rs4098854		TCGA-OR-A5KT-01A-11D-A29I-10	TCGA-OR-A5KT-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	062c82a9-f4e0-4eb0-adbc-3cb73423050d	35c2cd8b-80ce-4327-a1a3-f3ab82a32ccc	.	ATXN2-136	NM_002973	exon1	c.G522A	p.Q174Q	CTGCTGCTGCTGC	.	4	4	0	0	C|0.429;T|0.571	50	49	1	0	0	T	112036797	C	T	112036797	2	4	35	1	0	0	0	0	0	0	0	1	1212	796	28	3		3	ATXN2	12	112036797	Silent	SNP	C	TCGA-OR-A5KT-01A-11D-A29I-10	2743623	112036797	21815098	55	8307										
COG3	83548	bcgsc.ca	37	chr13	46103935	46103935	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0487804878048781	4	1	0.873822975517891	0	1.19838579499596	0.0606060606060606	0.532036613272311	0	tttatttccagcaaaggtcaAtgaccttgcggcaactgcat	8	10	1	1	rs2274285	byfrequency	TCGA-OR-A5KT-01A-11D-A29I-10	TCGA-OR-A5KT-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	062c82a9-f4e0-4eb0-adbc-3cb73423050d	35c2cd8b-80ce-4327-a1a3-f3ab82a32ccc	.	COG3-154	NM_031431	exon21	c.A2240G	p.N747S	AGGTCAATGACCT	.	74	4	64	0	A|0.326;G|0.674	0	0	0	0	0	G	46103935	A	G	46103935	3	3	35	1	0	0	0	0	1	0	0	0	3665	101	4	4	2322	4	COG3	13	46103935	Missense_Mutation	SNP	A	TCGA-OR-A5KT-01A-11D-A29I-10		46103935	69065943	56	8308										
OR10G3	26533	bcgsc.ca	37	chr14	22038525	22038525	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0487804878048781	4	1	0.873822975517891	0	1.19838579499596	0.0606060606060606	0.532036613272311	0	tacctgtcataggccattagGgtgtagaggaagcactgggt	14	7	1	1	rs11626693	byfrequency	TCGA-OR-A5KT-01A-11D-A29I-10	TCGA-OR-A5KT-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	062c82a9-f4e0-4eb0-adbc-3cb73423050d	35c2cd8b-80ce-4327-a1a3-f3ab82a32ccc	.	OR10G3-68	NM_001005465	exon1	c.C351A	p.T117T	CATTAGGGTGTAG	.	284	8	297	1	G|0.656;T|0.344	0	0	0	0	0	T	22038525	G	T	22038525	2	4	35	1	0	0	0	0	0	0	0	1	10929	1219	43	3		3	OR10G3	14	22038525	Silent	SNP	G	TCGA-OR-A5KT-01A-11D-A29I-10		22038525	85311015	57	8309										
TMOD2	29767	hgsc.bcm.edu;bcgsc.ca	37	chr15	52073255	52073255	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0487804878048781	4	1	0.873822975517891	0	1.19838579499596	0.0606060606060606	0.532036613272311	0	ttttagatgttgtcaaaggtGaaaaagtaaagccagtattt	9	3	1	2	novel		TCGA-OR-A5KT-01A-11D-A29I-10	TCGA-OR-A5KT-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	062c82a9-f4e0-4eb0-adbc-3cb73423050d	35c2cd8b-80ce-4327-a1a3-f3ab82a32ccc	.	TMOD2-92	NM_014548	exon6	c.G508T	p.E170X	AAAGGTGAAAAAG	.	60	4	83	0	.	0	0	0	0	0	T	52073255	G	T	52073255	4	4	35	1	0	0	0	0	0	1	0	0	16271	1291	45	3	526	3	TMOD2	15	52073255	Nonsense_Mutation	SNP	G	TCGA-OR-A5KT-01A-11D-A29I-10		52073255	50458137	58	8310										
KBTBD13	390594	hgsc.bcm.edu	37	chr15	65369395	65369395	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0487804878048781	4	1	0.873822975517891	0	1.19838579499596	0.0606060606060606	0.532036613272311	0	ggaggacgagctgctgcaggCcgtggagtgcgccgccttcc	17	13	0	0	rs2919358	byfrequency	TCGA-OR-A5KT-01A-11D-A29I-10	TCGA-OR-A5KT-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	062c82a9-f4e0-4eb0-adbc-3cb73423050d	35c2cd8b-80ce-4327-a1a3-f3ab82a32ccc	.	.	NM_001101362	exon1	c.C242T	p.A81V	TGCAGGCCGTGGA	.	4	4	8	0	C|0.452;T|0.548	0	0	0	0	0	T	65369395	C	T	65369395	3	4	35	1	0	0	0	0	1	0	0	0	8013	739	26	3	244	3	KBTBD13	15	65369395	Missense_Mutation	SNP	C	TCGA-OR-A5KT-01A-11D-A29I-10	13296140	65369395	37161997	59	8311										
CCDC102A	92922	hgsc.bcm.edu	37	chr16	57562804	57562804	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0487804878048781	4	1	0.873822975517891	0	1.19838579499596	0.0606060606060606	0.532036613272311	0	ggcagtgcagtccgaccaccGgcgcatggtcttctccatct	11	15	3	0	rs12935069		TCGA-OR-A5KT-01A-11D-A29I-10	TCGA-OR-A5KT-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	062c82a9-f4e0-4eb0-adbc-3cb73423050d	35c2cd8b-80ce-4327-a1a3-f3ab82a32ccc	.	CCDC102A-91	NM_033212	exon2	c.C286T	p.R96W	ACCACCGGCGCAT	.	4	4	0	0	G|0.001;A|0.999	0	0	0	0	0	A	57562804	G	A	57562804	3	1	35	1	0	0	0	0	1	0	0	0	2742	1115	39	1	1398	1	CCDC102A	16	57562804	Missense_Mutation	SNP	G	TCGA-OR-A5KT-01A-11D-A29I-10		57562804	32791949	60	8312										
POLR2A	5430	bcgsc.ca	37	chr17	7412403	7412403	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0487804878048781	4	1	0.873822975517891	0	1.19838579499596	0.0606060606060606	0.532036613272311	0	tactatgaaatgcctgacttTgatgtggcccgaatctcccc	8	12	1	3	rs2228133	byfrequency	TCGA-OR-A5KT-01A-11D-A29I-10	TCGA-OR-A5KT-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	062c82a9-f4e0-4eb0-adbc-3cb73423050d	35c2cd8b-80ce-4327-a1a3-f3ab82a32ccc	.	POLR2A-91	NM_000937	exon21	c.T3606C	p.F1202F	TGACTTTGATGTG	.	200	7	332	2	T|0.909;C|0.091	3	3	0	0	0	C	7412403	T	C	7412403	2	2	35	1	0	0	0	0	0	0	0	1	12243	1809	63	4		4	POLR2A	17	7412403	Silent	SNP	T	TCGA-OR-A5KT-01A-11D-A29I-10		7412403	73782807	61	8313										
FOXN1	8456	bcgsc.ca	37	chr17	26861877	26861877	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0487804878048781	4	1	0.873822975517891	0	1.19838579499596	0.0606060606060606	0.532036613272311	0	tgcactcactccacccagctCcaggccccattcctggcaag	7	19	1	0	rs61749867	byfrequency	TCGA-OR-A5KT-01A-11D-A29I-10	TCGA-OR-A5KT-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	062c82a9-f4e0-4eb0-adbc-3cb73423050d	35c2cd8b-80ce-4327-a1a3-f3ab82a32ccc	.	FOXN1-226	NM_003593	exon7	c.C1288T	p.P430S	CCAGCTCCAGGCC	.	188	7	154	0	C|0.971;T|0.029	0	0	0	0	0	T	26861877	C	T	26861877	3	4	35	1	0	0	0	0	1	0	0	0	6038	855	30	3	1314	3	FOXN1	17	26861877	Missense_Mutation	SNP	C	TCGA-OR-A5KT-01A-11D-A29I-10	19449474	26861877	54333333	62	8314										
ATP6V0A1	535	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	40666399	40666399	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0487804878048781	4	1	0.873822975517891	0	1.19838579499596	0.0606060606060606	0.532036613272311	0	tgctgttcttcttcttcactGcctttgccaccctgaccgtg	7	15	4	1	novel		TCGA-OR-A5KT-01A-11D-A29I-10	TCGA-OR-A5KT-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	062c82a9-f4e0-4eb0-adbc-3cb73423050d	35c2cd8b-80ce-4327-a1a3-f3ab82a32ccc	.	ATP6V0A1-91	NM_001130020	exon20	c.G2344A	p.A782T	TTCACTGCCTTTG	.	176	48	214	0	.	21	13	8	0	0	A	40666399	G	A	40666399	3	1	35	1	0	0	0	0	1	0	0	0	1169	1319	46	3	2440	3	ATP6V0A1	17	40666399	Missense_Mutation	SNP	G	TCGA-OR-A5KT-01A-11D-A29I-10	13804522	40666399	40528811	63	8315										
HSD17B1	3292	hgsc.bcm.edu	37	chr17	40706906	40706906	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0487804878048781	4	1	0.873822975517891	0	1.19838579499596	0.0606060606060606	0.532036613272311	0	cagaggacgaggccgggcgcGgtgcggtgggggaccctgag	22	10	0	2	rs605059	byfrequency	TCGA-OR-A5KT-01A-11D-A29I-10	TCGA-OR-A5KT-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	062c82a9-f4e0-4eb0-adbc-3cb73423050d	35c2cd8b-80ce-4327-a1a3-f3ab82a32ccc	.	HSD17B1-90	NM_000413	exon6	c.G937A	p.G313S	GGGCGCGGTGCGG	.	4	4	0	0	G|0.505;A|0.495	0	0	0	0	0	A	40706906	G	A	40706906	3	1	35	1	0	0	0	0	1	0	0	0	7399	1116	39	1	959	1	HSD17B1	17	40706906	Missense_Mutation	SNP	G	TCGA-OR-A5KT-01A-11D-A29I-10	40507	40706906	40488304	64	8316										
IGF2BP1	10642	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr17	47117325	47117325	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0487804878048781	4	1	0.873822975517891	0	1.19838579499596	0.0606060606060606	0.532036613272311	0	cttgtggcccccaggatagaCgtgcataggaaggagaacgc	14	10	0	2	novel		TCGA-OR-A5KT-01A-11D-A29I-10	TCGA-OR-A5KT-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	062c82a9-f4e0-4eb0-adbc-3cb73423050d	35c2cd8b-80ce-4327-a1a3-f3ab82a32ccc	.	IGF2BP1-226	NM_006546	exon7	c.C690A	p.D230E	GATAGACGTGCAT	.	81	6	132	0	.	0	0	0	0	0	A	47117325	C	A	47117325	3	1	35	1	0	0	0	0	1	0	0	0	7594	535	19	2	716	2	IGF2BP1	17	47117325	Missense_Mutation	SNP	C	TCGA-OR-A5KT-01A-11D-A29I-10	6410419	47117325	34077885	65	8317										
PRKAR1A	5573	hgsc.bcm.edu	37	chr17	66511699	66511700	+	Frame_Shift_Ins	INS	-	-	T													0.0487804878048781	4	1	0.873822975517891	0	1.19838579499596	0.0606060606060606	0.532036613272311	0	tggcattcctcagggaatacINStttgagaggttggagaaggt					novel		TCGA-OR-A5KT-01A-11D-A29I-10	TCGA-OR-A5KT-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	062c82a9-f4e0-4eb0-adbc-3cb73423050d	35c2cd8b-80ce-4327-a1a3-f3ab82a32ccc	.	PRKAR1A-1141	NM_001276290	exon1	c.159_160insT	p.Y53fs	GGAATACTTTGAG	.	173	118	78	2	.	0	0	0	0	0	T	66511700	-	T	66511699	7	5	35	1	0	1	1	0	0	0	0	0	12535	576	20	0	161	0	PRKAR1A	17	66511699	Frame_Shift_Ins	INS	-	TCGA-OR-A5KT-01A-11D-A29I-10	19394374	66511699	14683511	66	8318										
TMX3	54495	broad.mit.edu	37	chr18	66377285	66377285	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0487804878048781	4	1	0.873822975517891	0	1.19838579499596	0.0606060606060606	0.532036613272311	0	ggaagtagcatccatctttcCaaccttaactggagaaccaa	7	11	1	1	novel		TCGA-OR-A5KT-01A-11D-A29I-10	TCGA-OR-A5KT-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	062c82a9-f4e0-4eb0-adbc-3cb73423050d	35c2cd8b-80ce-4327-a1a3-f3ab82a32ccc	.	TMX3-91	NM_019022	exon4	c.G238A	p.G80R	TCTTTCCAACCTT	.	87	4	83	0	.	0	0	0	0	0	T	66377285	C	T	66377285	3	4	35	1	0	0	0	0	1	0	0	0	16305	603	21	3	1178	3	TMX3	18	66377285	Missense_Mutation	SNP	C	TCGA-OR-A5KT-01A-11D-A29I-10		66377285	11699963	67	8319										
CBLN2	147381	hgsc.bcm.edu	37	chr18	70209321	70209321	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0487804878048781	4	1	0.873822975517891	0	1.19838579499596	0.0606060606060606	0.532036613272311	0	aggcaggatccgcagccgccCggctcgcgcagcgccccccg	14	20	0	0	rs7237888		TCGA-OR-A5KT-01A-11D-A29I-10	TCGA-OR-A5KT-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	062c82a9-f4e0-4eb0-adbc-3cb73423050d	35c2cd8b-80ce-4327-a1a3-f3ab82a32ccc	.	CBLN2-90	NM_182511	exon3	c.G75T	p.P25P	GCCGCCCGGCTCG	.	7	7	0	0	C|0.390;A|0.610	0	0	0	0	0	A	70209321	C	A	70209321	2	1	35	1	0	0	0	0	0	0	0	1	2711	639	23	2		2	CBLN2	18	70209321	Silent	SNP	C	TCGA-OR-A5KT-01A-11D-A29I-10	3832036	70209321	7867927	68	8320										
MUC16	94025	bcgsc.ca	37	chr19	9062415	9062415	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0487804878048781	4	1	0.873822975517891	0	1.19838579499596	0.0606060606060606	0.532036613272311	0	tgtgtgtggaaggctgcatgTcttctgtatctacagtgtct	12	7	4	0	rs12978757	byfrequency	TCGA-OR-A5KT-01A-11D-A29I-10	TCGA-OR-A5KT-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	062c82a9-f4e0-4eb0-adbc-3cb73423050d	35c2cd8b-80ce-4327-a1a3-f3ab82a32ccc	.	MUC16-566	NM_024690	exon3	c.A25031C	p.D8344A	TGCATGTCTTCTG	.	227	7	249	2	T|0.401;G|0.599	0	0	0	0	0	G	9062415	T	G	9062415	3	3	35	1	0	0	0	0	1	0	0	0	10001	1667	58	5	18820	5	MUC16	19	9062415	Missense_Mutation	SNP	T	TCGA-OR-A5KT-01A-11D-A29I-10		9062415	50066568	69	8321										
PRKCSH	5589	hgsc.bcm.edu	37	chr19	11558367	11558367	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0487804878048781	4	1	0.873822975517891	0	1.19838579499596	0.0606060606060606	0.532036613272311	0	gaggaggaggaggaggaggaGgaggaagaagaggctgaaga	23	1	0	4	novel		TCGA-OR-A5KT-01A-11D-A29I-10	TCGA-OR-A5KT-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	062c82a9-f4e0-4eb0-adbc-3cb73423050d	35c2cd8b-80ce-4327-a1a3-f3ab82a32ccc	.	PRKCSH-90	NM_001001329	exon11	c.G963A	p.E321E	GGAGGAGGAGGAA	.	104	8	130	0	.	40	40	0	0	0	A	11558367	G	A	11558367	2	1	35	1	0	0	0	0	0	0	0	1	12548	991	35	3		3	PRKCSH	19	11558367	Silent	SNP	G	TCGA-OR-A5KT-01A-11D-A29I-10	2495952	11558367	47570616	70	8322										
RFX1	5989	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	14088836	14088836	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0487804878048781	4	1	0.873822975517891	0	1.19838579499596	0.0606060606060606	0.532036613272311	0	gtgtagctggcatcgccgccCtccacatactgcacctggct	10	16	0	0	novel		TCGA-OR-A5KT-01A-11D-A29I-10	TCGA-OR-A5KT-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	062c82a9-f4e0-4eb0-adbc-3cb73423050d	35c2cd8b-80ce-4327-a1a3-f3ab82a32ccc	.	RFX1-92	NM_002918	exon8	c.G897C	p.E299D	GCCGCCCTCCACA	.	84	32	115	0	.	1	1	0	0	0	G	14088836	C	G	14088836	3	3	35	1	0	0	0	0	1	0	0	0	13297	680	24	3	2098	3	RFX1	19	14088836	Missense_Mutation	SNP	C	TCGA-OR-A5KT-01A-11D-A29I-10	2530469	14088836	45040147	71	8323										
SLC7A9	11136	bcgsc.ca	37	chr19	33355069	33355069	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0487804878048781	4	1	0.873822975517891	0	1.19838579499596	0.0606060606060606	0.532036613272311	0	cagcccacatagaagggcgcAcacacatactcggagaagct	10	13	0	2	rs12150890	byfrequency	TCGA-OR-A5KT-01A-11D-A29I-10	TCGA-OR-A5KT-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	062c82a9-f4e0-4eb0-adbc-3cb73423050d	35c2cd8b-80ce-4327-a1a3-f3ab82a32ccc	.	SLC7A9-91	NM_001243036	exon4	c.T411C	p.C137C	GGGCGCACACACA	.	118	6	179	1	A|0.901;G|0.099	0	0	0	0	0	G	33355069	A	G	33355069	2	3	35	1	0	0	0	0	0	0	0	1	14740	157	6	4		4	SLC7A9	19	33355069	Silent	SNP	A	TCGA-OR-A5KT-01A-11D-A29I-10	19266233	33355069	25773914	72	8324										
SAMD4B	55095	hgsc.bcm.edu;broad.mit.edu	37	chr19	39871263	39871263	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0487804878048781	4	1	0.873822975517891	0	1.19838579499596	0.0606060606060606	0.532036613272311	0	aactcgctccccatagctggCtctgtggggatgggagtggc	15	11	1	0	novel		TCGA-OR-A5KT-01A-11D-A29I-10	TCGA-OR-A5KT-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	062c82a9-f4e0-4eb0-adbc-3cb73423050d	35c2cd8b-80ce-4327-a1a3-f3ab82a32ccc	.	SAMD4B-90	NM_018028	exon13	c.C1686G	p.G562G	AGCTGGCTCTGTG	.	72	4	115	0	.	6	5	1	0	0	G	39871263	C	G	39871263	2	3	35	1	0	0	0	0	0	0	0	1	13857	784	28	3		3	SAMD4B	19	39871263	Silent	SNP	C	TCGA-OR-A5KT-01A-11D-A29I-10	6516194	39871263	19257720	73	8325										
FCGBP	8857	bcgsc.ca	37	chr19	40406019	40406019	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0487804878048781	4	1	0.873822975517891	0	1.19838579499596	0.0606060606060606	0.532036613272311	0	cctttacccgcatggcacgtGcactgctgccgacagttgtc	10	15	0	0	rs2355719	byfrequency	TCGA-OR-A5KT-01A-11D-A29I-10	TCGA-OR-A5KT-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	062c82a9-f4e0-4eb0-adbc-3cb73423050d	35c2cd8b-80ce-4327-a1a3-f3ab82a32ccc	.	FCGBP-98	NM_003890	exon10	c.C4827T	p.C1609C	GCACGTGCACTGC	.	180	8	307	3	G|0.732;A|0.268	0	0	0	0	0	A	40406019	G	A	40406019	2	1	35	1	0	0	0	0	0	0	0	1	5797	1311	46	3		3	FCGBP	19	40406019	Silent	SNP	G	TCGA-OR-A5KT-01A-11D-A29I-10	534756	40406019	18722964	74	8326										
CEACAM20	125931	bcgsc.ca	37	chr19	45016116	45016116	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0487804878048781	4	1	0.873822975517891	0	1.19838579499596	0.0606060606060606	0.532036613272311	0	ctgaagctgggatatattgcAatactcaggactcaggcttt	10	8	2	1	rs8100718	byfrequency	TCGA-OR-A5KT-01A-11D-A29I-10	TCGA-OR-A5KT-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	062c82a9-f4e0-4eb0-adbc-3cb73423050d	35c2cd8b-80ce-4327-a1a3-f3ab82a32ccc	.	CEACAM20-67	NM_001102600	exon10	c.T1534C	p.C512R	TATTGCAATACTC	.	136	6	198	0	A|0.633;G|0.367	0	0	0	0	0	G	45016116	A	G	45016116	3	3	35	1	0	0	0	0	1	0	0	0	3197	130	5	4	272	4	CEACAM20	19	45016116	Missense_Mutation	SNP	A	TCGA-OR-A5KT-01A-11D-A29I-10	4610097	45016116	14112867	75	8327										
ZCCHC3	85364	hgsc.bcm.edu	37	chr20	278515	278515	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0487804878048781	4	1	0.873822975517891	0	1.19838579499596	0.0606060606060606	0.532036613272311	0	ccaccggctggccgcggggaTccgaagggccgtcggagaga	18	13	0	1	rs2223665	byfrequency	TCGA-OR-A5KT-01A-11D-A29I-10	TCGA-OR-A5KT-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	062c82a9-f4e0-4eb0-adbc-3cb73423050d	35c2cd8b-80ce-4327-a1a3-f3ab82a32ccc	.	ZCCHC3-90	NM_033089	exon1	c.T288C	p.D96D	CGGGGATCCGAAG	.	6	6	0	0	T|0.454;C|0.546	0	0	0	0	0	C	278515	T	C	278515	2	2	35	1	0	0	0	0	0	0	0	1	17626	1432	50	4		4	ZCCHC3	20	278515	Silent	SNP	T	TCGA-OR-A5KT-01A-11D-A29I-10		278515	62747005	76	8328										
DBNDD2	55861	hgsc.bcm.edu;bcgsc.ca	37	chr20	44035159	44035159	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0487804878048781	4	1	0.873822975517891	0	1.19838579499596	0.0606060606060606	0.532036613272311	0	gctcgcaggggctgcctccgAccgccgggcgagctgcgagc	17	16	0	0	novel		TCGA-OR-A5KT-01A-11D-A29I-10	TCGA-OR-A5KT-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	062c82a9-f4e0-4eb0-adbc-3cb73423050d	35c2cd8b-80ce-4327-a1a3-f3ab82a32ccc	.	DBNDD2-536	NM_018478	exon1	c.A68G	p.D23G	CCTCCGACCGCCG	.	61	8	54	0	.	0	0	0	0	0	G	44035159	A	G	44035159	3	3	35	1	0	0	0	0	1	0	0	0	4260	290	10	4		4	DBNDD2	20	44035159	Missense_Mutation	SNP	A	TCGA-OR-A5KT-01A-11D-A29I-10	43756644	44035159	18990361	77	8329										
CLDN5	7122	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr22	19511427	19511427	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0487804878048781	4	1	0.873822975517891	0	1.19838579499596	0.0606060606060606	0.532036613272311	0	gagcacgcctcccgtgagggCcacacgcgccttggccgggc	15	17	0	1	novel		TCGA-OR-A5KT-01A-11D-A29I-10	TCGA-OR-A5KT-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	062c82a9-f4e0-4eb0-adbc-3cb73423050d	35c2cd8b-80ce-4327-a1a3-f3ab82a32ccc	.	CLDN5-492	NM_001130861	exon1	c.G607C	p.A203P	TGAGGGCCACACG	.	27	10	36	0	.	40	40	0	0	0	G	19511427	C	G	19511427	3	3	35	1	0	0	0	0	1	0	0	0	3494	739	26	3	308	3	CLDN5	22	19511427	Missense_Mutation	SNP	C	TCGA-OR-A5KT-01A-11D-A29I-10		19511427	31793139	78	8330										
SCARF2	91179	hgsc.bcm.edu	37	chr22	20780097	20780097	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0487804878048781	4	1	0.873822975517891	0	1.19838579499596	0.0606060606060606	0.532036613272311	0	tcctcgggcagccccgggggGcgcggcgttgggtcgcgggt	21	13	0	0	rs759609	bycluster;byfrequency;by1000genomes	TCGA-OR-A5KT-01A-11D-A29I-10	TCGA-OR-A5KT-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	062c82a9-f4e0-4eb0-adbc-3cb73423050d	35c2cd8b-80ce-4327-a1a3-f3ab82a32ccc	.	SCARF2-341	NM_153334	exon11	c.C2181G	p.R727R	CGGGGGGCGCGGC	.	5	5	0	0	G|0.826;C|0.174	0	0	0	0	0	C	20780097	G	C	20780097	2	2	35	1	0	0	0	0	0	0	0	1	13919	1190	42	3		3	SCARF2	22	20780097	Silent	SNP	G	TCGA-OR-A5KT-01A-11D-A29I-10	1268670	20780097	30524469	79	8331										
SH3BP1	23616	broad.mit.edu	37	chr22	38042891	38042891	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0487804878048781	4	1	0.873822975517891	0	1.19838579499596	0.0606060606060606	0.532036613272311	0	agcagacaatggcctcggacCcccacagcctggaggagttc	12	14	0	1	novel		TCGA-OR-A5KT-01A-11D-A29I-10	TCGA-OR-A5KT-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	062c82a9-f4e0-4eb0-adbc-3cb73423050d	35c2cd8b-80ce-4327-a1a3-f3ab82a32ccc	.	SH3BP1-90	NM_018957	exon11	c.C991T	p.P331S	TCGGACCCCCACA	.	35	3	47	0	.	0	0	0	0	0	T	38042891	C	T	38042891	3	4	35	1	0	0	0	0	1	0	0	0	14279	623	22	3	1033	3	SH3BP1	22	38042891	Missense_Mutation	SNP	C	TCGA-OR-A5KT-01A-11D-A29I-10	17262794	38042891	13261675	80	8332										
ATRX	546	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	76939322	76939322	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0487804878048781	4	1	0.873822975517891	0	1.19838579499596	0.0606060606060606	0.532036613272311	0	ttcctctgttggaacattctGatgcatgtgctcactatcta	7	10	4	1	novel		TCGA-OR-A5KT-01A-11D-A29I-10	TCGA-OR-A5KT-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	062c82a9-f4e0-4eb0-adbc-3cb73423050d	35c2cd8b-80ce-4327-a1a3-f3ab82a32ccc	.	ATRX-248	NM_000489	exon9	c.C1426T	p.Q476X	CATTCTGATGCAT	.	62	18	56	0	.	0	0	0	0	0	A	76939322	G	A	76939322	4	1	35	1	0	0	0	0	0	1	0	0	1209	1299	45	3	6160	3	ATRX	23	76939322	Nonsense_Mutation	SNP	G	TCGA-OR-A5KT-01A-11D-A29I-10		76939322	78331238	81	8333										
ATP11C	286410	broad.mit.edu;bcgsc.ca	37	chrX	138886677	138886677	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0487804878048781	4	1	0.873822975517891	0	1.19838579499596	0.0606060606060606	0.532036613272311	0	ggctgtagtgacataacaggTtccatcagtggtgcaagatg	13	7	1	2	novel		TCGA-OR-A5KT-01A-11D-A29I-10	TCGA-OR-A5KT-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	062c82a9-f4e0-4eb0-adbc-3cb73423050d	35c2cd8b-80ce-4327-a1a3-f3ab82a32ccc	.	ATP11C-198	NM_001010986	exon6	c.A517G	p.T173A	AACAGGTTCCATC	.	352	10	381	1	.	0	0	0	0	0	C	138886677	T	C	138886677	3	2	35	1	0	0	0	0	1	0	0	0	1122	1725	60	4	3044	4	ATP11C	23	138886677	Missense_Mutation	SNP	T	TCGA-OR-A5KT-01A-11D-A29I-10	61947355	138886677	16383883	82	8334										
PRAMEF2	65122	bcgsc.ca	37	chr1	12920067	12920067	+	Silent	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.0101010101010101	1	1	0.230776972624799	0	0.289812942366026	1	1	0	ttcctcaggctggaacacctCcagttgcttaaaataaaatt	6	10	1	0	rs17038709	byfrequency	TCGA-OR-A5KU-01A-11D-A29I-10	TCGA-OR-A5KU-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e9652ca0-126e-4332-909a-4e2d2fc489ef	68f72637-d9e1-41a6-8bd0-b4f99bbc13a1	.	PRAMEF2-68	NM_023014	exon3	c.C807G	p.L269L	ACACCTCCAGTTG	.	48	4	107	1	C|0.887;G|0.113	0	0	0	0	0	G	12920067	C	G	12920067	2	3	36	1	0	0	0	0	0	0	0	1	12467	842	30	3		3	PRAMEF2	1	12920067	Silent	SNP	C	TCGA-OR-A5KU-01A-11D-A29I-10		12920067	236330554	1	8335										
PINK1	65018	hgsc.bcm.edu	37	chr1	20960230	20960230	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0101010101010101	1	1	0.230776972624799	0	0.289812942366026	1	1	0	cgcagggtcgggctcgggctCcctaaccgtctccgcttctt	12	16	2	0	rs45530340	byfrequency	TCGA-OR-A5KU-01A-11D-A29I-10	TCGA-OR-A5KU-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e9652ca0-126e-4332-909a-4e2d2fc489ef	68f72637-d9e1-41a6-8bd0-b4f99bbc13a1	.	PINK1-380	NM_032409	exon1	c.C189T	p.L63L	CGGGCTCCCTAAC	.	5	5	0	0	C|0.868;T|0.132	2	0	2	0	0	T	20960230	C	T	20960230	2	4	36	1	0	0	0	0	0	0	0	1	11961	842	30	3		3	PINK1	1	20960230	Silent	SNP	C	TCGA-OR-A5KU-01A-11D-A29I-10	8040163	20960230	228290391	2	8336										
OPRD1	4985	hgsc.bcm.edu	37	chr1	29138975	29138975	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0101010101010101	1	1	0.230776972624799	0	0.289812942366026	1	1	0	ggacgcctaccctagcgcctGccccagcgctggcgccaatg	12	18	0	0	rs1042114	byfrequency	TCGA-OR-A5KU-01A-11D-A29I-10	TCGA-OR-A5KU-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e9652ca0-126e-4332-909a-4e2d2fc489ef	68f72637-d9e1-41a6-8bd0-b4f99bbc13a1	.	OPRD1-69	NM_000911	exon1	c.G80T	p.C27F	GCGCCTGCCCCAG	.	7	7	0	0	G|0.061;T|0.939	0	0	0	0	0	T	29138975	G	T	29138975	3	4	36	1	0	0	0	0	1	0	0	0	10913	1319	46	3	82	3	OPRD1	1	29138975	Missense_Mutation	SNP	G	TCGA-OR-A5KU-01A-11D-A29I-10	8178745	29138975	220111646	3	8337										
NOTCH2	4853	hgsc.bcm.edu	37	chr1	120611964	120611964	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0101010101010101	1	1	0.230776972624799	0	0.289812942366026	1	1	0	tcaccatgcgcgggggccgcGcagcacagccagagcgccag	15	16	1	1	rs11810554	byfrequency	TCGA-OR-A5KU-01A-11D-A29I-10	TCGA-OR-A5KU-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e9652ca0-126e-4332-909a-4e2d2fc489ef	68f72637-d9e1-41a6-8bd0-b4f99bbc13a1	.	NOTCH2-1441	NM_024408	exon1	c.C57G	p.C19W	GGCCGCGCAGCAC	.	10	6	0	0	G|0.680;C|0.320	1	1	0	0	0	C	120611964	G	C	120611964	3	2	36	1	0	0	0	0	1	0	0	0	10577	1079	38	2	7494	2	NOTCH2	1	120611964	Missense_Mutation	SNP	G	TCGA-OR-A5KU-01A-11D-A29I-10	91472989	120611964	128638657	4	8338										
HRNR	388697	bcgsc.ca	37	chr1	152185882	152185882	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0101010101010101	1	1	0.230776972624799	0	0.289812942366026	1	1	0	tggccatagctggaagactgGcctgtgctagatccctcctg	12	12	0	2	rs77559827	alternate_allele	TCGA-OR-A5KU-01A-11D-A29I-10	TCGA-OR-A5KU-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e9652ca0-126e-4332-909a-4e2d2fc489ef	68f72637-d9e1-41a6-8bd0-b4f99bbc13a1	.	HRNR-93	NM_001009931	exon3	c.C8223G	p.G2741G	AGACTGGCCTGTG	.	43	11	116	0	A|1.000;|0.000	0	0	0	0	0	C	152185882	G	C	152185882	2	2	36	1	0	0	0	0	0	0	0	1	7380	1190	42	3		3	HRNR	1	152185882	Silent	SNP	G	TCGA-OR-A5KU-01A-11D-A29I-10	31573918	152185882	97064739	5	8339										
PVRL4	81607	hgsc.bcm.edu	37	chr1	161049499	161049499	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0101010101010101	1	1	0.230776972624799	0	0.289812942366026	1	1	0	ggagcactgagccgtccaggGggttgcgtgggggcggcggc	22	10	0	1	rs78105657	byfrequency	TCGA-OR-A5KU-01A-11D-A29I-10	TCGA-OR-A5KU-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e9652ca0-126e-4332-909a-4e2d2fc489ef	68f72637-d9e1-41a6-8bd0-b4f99bbc13a1	.	PVRL4-92	NM_030916	exon2	c.C320T	p.P107L	TCCAGGGGGTTGC	.	39	32	2	0	G|0.994;A|0.006	0	0	0	0	0	A	161049499	G	A	161049499	3	1	36	1	0	0	0	0	1	0	0	0	12877	1232	43	3	1244	3	PVRL4	1	161049499	Missense_Mutation	SNP	G	TCGA-OR-A5KU-01A-11D-A29I-10	8863617	161049499	88201122	6	8340										
C1orf106	55765	hgsc.bcm.edu	37	chr1	200880978	200880978	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0101010101010101	1	1	0.230776972624799	0	0.289812942366026	1	1	0	cgcctggcgagtgggagctgCgccgcgcagccccgggccct	17	17	0	0	rs296520	byfrequency	TCGA-OR-A5KU-01A-11D-A29I-10	TCGA-OR-A5KU-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e9652ca0-126e-4332-909a-4e2d2fc489ef	68f72637-d9e1-41a6-8bd0-b4f99bbc13a1	.	C1orf106-93	NM_018265	exon9	c.C1654T	p.R552C	GAGCTGCGCCGCG	.	8	8	0	0	C|0.242;T|0.758	0	0	0	0	0	T	200880978	C	T	200880978	3	4	36	1	0	0	0	0	1	0	0	0	1986	768	27	1	1646	1	C1orf106	1	200880978	Missense_Mutation	SNP	C	TCGA-OR-A5KU-01A-11D-A29I-10	39831479	200880978	48369643	7	8341										
OR2T4	127074	bcgsc.ca	37	chr1	248524967	248524967	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0101010101010101	1	1	0.230776972624799	0	0.289812942366026	1	1	0	tcagacaatccaaacatccaAtggccaatatcacctggatg	6	12	2	1	rs200915140		TCGA-OR-A5KU-01A-11D-A29I-10	TCGA-OR-A5KU-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e9652ca0-126e-4332-909a-4e2d2fc489ef	68f72637-d9e1-41a6-8bd0-b4f99bbc13a1	.	OR2T4-68	NM_001004696	exon1	c.A85G	p.M29V	CATCCAATGGCCA	.	97	8	288	2	.	0	0	0	0	0	G	248524967	A	G	248524967	3	3	36	1	0	0	0	0	1	0	0	0	11056	101	4	4	87	4	OR2T4	1	248524967	Missense_Mutation	SNP	A	TCGA-OR-A5KU-01A-11D-A29I-10	47643989	248524967	725654	8	8342										
SIX3	6496	hgsc.bcm.edu	37	chr2	45171842	45171842	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0101010101010101	1	1	0.230776972624799	0	0.289812942366026	1	1	0	tccagcctgacggagcgcgcAgacaccggcacctccatcct	10	18	0	2	rs62840660	byfrequency	TCGA-OR-A5KU-01A-11D-A29I-10	TCGA-OR-A5KU-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e9652ca0-126e-4332-909a-4e2d2fc489ef	68f72637-d9e1-41a6-8bd0-b4f99bbc13a1	.	SIX3-90	NM_005413	exon2	c.A942G	p.A314A	GCGCGCAGACACC	.	4	4	0	0	A|0.059;G|0.941	0	0	0	0	0	G	45171842	A	G	45171842	2	3	36	1	0	0	0	0	0	0	0	1	14383	175	7	4		4	SIX3	2	45171842	Silent	SNP	A	TCGA-OR-A5KU-01A-11D-A29I-10		45171842	198027531	9	8343										
RNF149	284996	hgsc.bcm.edu	37	chr2	101925026	101925026	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0101010101010101	1	1	0.230776972624799	0	0.289812942366026	1	1	0	cacgccgcgagccccgacgcTggcttcgcgccgccgccacg	13	21	0	0	rs11123868	byfrequency	TCGA-OR-A5KU-01A-11D-A29I-10	TCGA-OR-A5KU-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e9652ca0-126e-4332-909a-4e2d2fc489ef	68f72637-d9e1-41a6-8bd0-b4f99bbc13a1	.	RNF149-290	NM_173647	exon1	c.A25G	p.S9G	CGACGCTGGCTTC	.	4	4	0	0	T|0.543;C|0.457	1	0	1	0	0	C	101925026	T	C	101925026	3	2	36	1	0	0	0	0	1	0	0	0	13485	1580	55	4	1205	4	RNF149	2	101925026	Missense_Mutation	SNP	T	TCGA-OR-A5KU-01A-11D-A29I-10	56753184	101925026	141274347	10	8344										
TTC21B	79809	bcgsc.ca	37	chr2	166773971	166773971	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0101010101010101	1	1	0.230776972624799	0	0.289812942366026	1	1	0	gactgagcttttatcaaatgGtataaaggatagtctctcac	8	7	3	1	rs6750044	byfrequency	TCGA-OR-A5KU-01A-11D-A29I-10	TCGA-OR-A5KU-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e9652ca0-126e-4332-909a-4e2d2fc489ef	68f72637-d9e1-41a6-8bd0-b4f99bbc13a1	.	TTC21B-94	NM_024753	exon14	c.C1695T	p.Y565Y	CAAATGGTATAAA	.	45	4	47	0	G|0.668;A|0.332	2	2	0	0	0	A	166773971	G	A	166773971	2	1	36	1	0	0	0	0	0	0	0	1	16726	1256	44	3		3	TTC21B	2	166773971	Silent	SNP	G	TCGA-OR-A5KU-01A-11D-A29I-10	64848945	166773971	76425402	11	8345										
SCN9A	6335	hgsc.bcm.edu	37	chr2	167055351	167055351	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0101010101010101	1	1	0.230776972624799	0	0.289812942366026	1	1	0	tctcattaacattatcaaaaGccatatcttttttattgagt	3	7	3	1	novel		TCGA-OR-A5KU-01A-11D-A29I-10	TCGA-OR-A5KU-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e9652ca0-126e-4332-909a-4e2d2fc489ef	68f72637-d9e1-41a6-8bd0-b4f99bbc13a1	.	SCN9A-181	NM_002977	exon27	c.C5765A	p.A1922D	TCAAAAGCCATAT	.	68	4	105	0	.	0	0	0	0	0	T	167055351	G	T	167055351	3	4	36	1	0	0	0	0	1	0	0	0	13960	971	34	3	172	3	SCN9A	2	167055351	Missense_Mutation	SNP	G	TCGA-OR-A5KU-01A-11D-A29I-10	281380	167055351	76144022	12	8346										
EFHD1	80303	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	233527635	233527635	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0101010101010101	1	1	0.230776972624799	0	0.289812942366026	1	1	0	aaggaggtggatgaggacttCgatggcaagctcagcttccg	15	8	1	1	novel		TCGA-OR-A5KU-01A-11D-A29I-10	TCGA-OR-A5KU-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e9652ca0-126e-4332-909a-4e2d2fc489ef	68f72637-d9e1-41a6-8bd0-b4f99bbc13a1	.	EFHD1-90	NM_025202	exon2	c.C426T	p.F142F	GGACTTCGATGGC	.	86	66	106	0	.	1	0	1	0	0	T	233527635	C	T	233527635	2	4	36	1	0	0	0	0	0	0	0	1	4959	883	31	1		1	EFHD1	2	233527635	Silent	SNP	C	TCGA-OR-A5KU-01A-11D-A29I-10	66472284	233527635	9671738	13	8347										
DGKD	8527	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	234354288	234354288	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0101010101010101	1	1	0.230776972624799	0	0.289812942366026	1	1	0	gtgtcagctgggagtgctgcCgctcggcacagggaacgact	16	11	1	0	rs139149715		TCGA-OR-A5KU-01A-11D-A29I-10	TCGA-OR-A5KU-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e9652ca0-126e-4332-909a-4e2d2fc489ef	68f72637-d9e1-41a6-8bd0-b4f99bbc13a1	.	DGKD-676	NM_152879	exon11	c.C1214T	p.P405L	TGCTGCCGCTCGG	.	136	85	126	0	C|1.000;T|0.000	0	0	0	0	0	T	234354288	C	T	234354288	3	4	36	1	0	0	0	0	1	0	0	0	4478	652	23	1	1280	1	DGKD	2	234354288	Missense_Mutation	SNP	C	TCGA-OR-A5KU-01A-11D-A29I-10	826653	234354288	8845085	14	8348										
ANO7	50636	broad.mit.edu	37	chr2	242141634	242141634	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0101010101010101	1	1	0.230776972624799	0	0.289812942366026	1	1	0	tgagatcctggccaagacccCgtatggccacgagaagaaaa	11	11	0	4	novel		TCGA-OR-A5KU-01A-11D-A29I-10	TCGA-OR-A5KU-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e9652ca0-126e-4332-909a-4e2d2fc489ef	68f72637-d9e1-41a6-8bd0-b4f99bbc13a1	.	ANO7-92	NM_001001891	exon8	c.C800T	p.P267L	AGACCCCGTATGG	.	51	3	74	0	.	0	0	0	0	0	T	242141634	C	T	242141634	3	4	36	1	0	0	0	0	1	0	0	0	702	652	23	1	902	1	ANO7	2	242141634	Missense_Mutation	SNP	C	TCGA-OR-A5KU-01A-11D-A29I-10	7787346	242141634	1057739	15	8349										
ITPR1	3708	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	4715944	4715944	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.0101010101010101	1	1	0.230776972624799	0	0.289812942366026	1	1	0	agagatttgctcagaccatgGagtttgtggaggagtattta	13	4	1	2	novel		TCGA-OR-A5KU-01A-11D-A29I-10	TCGA-OR-A5KU-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e9652ca0-126e-4332-909a-4e2d2fc489ef	68f72637-d9e1-41a6-8bd0-b4f99bbc13a1	.	ITPR1-710	NM_001099952	exon22	c.G2515C	p.E839Q	ACCATGGAGTTTG	.	69	29	78	0	.	0	0	0	0	0	C	4715944	G	C	4715944	3	2	36	1	0	0	0	0	1	0	0	0	7941	1175	41	3	2593	3	ITPR1	3	4715944	Missense_Mutation	SNP	G	TCGA-OR-A5KU-01A-11D-A29I-10		4715944	193306486	16	8350										
CTNNB1	1499	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	41266124	41266124	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0101010101010101	1	1	0.230776972624799	0	0.289812942366026	1	1	0	gaatccattctggtgccactAccacagctccttctctgagt	7	14	2	1	rs121913412	bycluster	TCGA-OR-A5KU-01A-11D-A29I-10	TCGA-OR-A5KU-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e9652ca0-126e-4332-909a-4e2d2fc489ef	68f72637-d9e1-41a6-8bd0-b4f99bbc13a1	.	CTNNB1-24361	NM_001098209	exon3	c.A121G	p.T41A	GCCACTACCACAG	.	167	63	170	0	.	51	28	23	0	0	G	41266124	A	G	41266124	3	3	36	1	0	0	0	0	1	0	0	0	4022	391	14	4	127	4	CTNNB1	3	41266124	Missense_Mutation	SNP	A	TCGA-OR-A5KU-01A-11D-A29I-10	36550180	41266124	156756306	17	8351										
CAMKV	79012	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	49898695	49898695	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0101010101010101	1	1	0.230776972624799	0	0.289812942366026	1	1	0	aagtcactgatgacaatcttCgagttcttcagccggttgta	9	9	4	2	rs200717131		TCGA-OR-A5KU-01A-11D-A29I-10	TCGA-OR-A5KU-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e9652ca0-126e-4332-909a-4e2d2fc489ef	68f72637-d9e1-41a6-8bd0-b4f99bbc13a1	.	CAMKV-613	NM_024046	exon6	c.G480A	p.S160S	AATCTTCGAGTTC	.	101	28	96	2	C|1.000;T|0.000	0	0	0	0	0	T	49898695	C	T	49898695	2	4	36	1	0	0	0	0	0	0	0	1	2614	871	31	1		1	CAMKV	3	49898695	Silent	SNP	C	TCGA-OR-A5KU-01A-11D-A29I-10	8632571	49898695	148123735	18	8352										
PHLDB2	90102	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	111632246	111632246	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0101010101010101	1	1	0.230776972624799	0	0.289812942366026	1	1	0	cgcttatctactgggaccacCgtggaagatgtgcagaaaat	11	9	1	2	rs112434778	byfrequency	TCGA-OR-A5KU-01A-11D-A29I-10	TCGA-OR-A5KU-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e9652ca0-126e-4332-909a-4e2d2fc489ef	68f72637-d9e1-41a6-8bd0-b4f99bbc13a1	.	PHLDB2-96	NM_001134437	exon4	c.C1497T	p.T499T	GACCACCGTGGAA	.	73	23	73	0	C|0.998;T|0.002	1	1	0	0	0	T	111632246	C	T	111632246	2	4	36	1	0	0	0	0	0	0	0	1	11881	639	23	1		1	PHLDB2	3	111632246	Silent	SNP	C	TCGA-OR-A5KU-01A-11D-A29I-10	61733551	111632246	86390184	19	8353										
PRR23A	729627	hgsc.bcm.edu	37	chr3	138725072	138725072	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0101010101010101	1	1	0.230776972624799	0	0.289812942366026	1	1	0	ggctgctgtccccaccagggCgcagggaaggcgctggggct	18	13	0	0	rs185399823	by1000genomes	TCGA-OR-A5KU-01A-11D-A29I-10	TCGA-OR-A5KU-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e9652ca0-126e-4332-909a-4e2d2fc489ef	68f72637-d9e1-41a6-8bd0-b4f99bbc13a1	.	.	NM_001134659	exon1	c.G39T	p.A13A	CCAGGGCGCAGGG	.	14	8	0	0	C|0.998;A|0.002	0	0	0	0	0	A	138725072	C	A	138725072	2	1	36	1	0	0	0	0	0	0	0	1	12626	755	27	2		2	PRR23A	3	138725072	Silent	SNP	C	TCGA-OR-A5KU-01A-11D-A29I-10	27092826	138725072	59297358	20	8354										
ZNF141	7700	bcgsc.ca	37	chr4	367169	367169	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0101010101010101	1	1	0.230776972624799	0	0.289812942366026	1	1	0	agaaaccctacaaatgtgaaGaatgtggcaaagcctttaat	8	7	0	3	rs145966198		TCGA-OR-A5KU-01A-11D-A29I-10	TCGA-OR-A5KU-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e9652ca0-126e-4332-909a-4e2d2fc489ef	68f72637-d9e1-41a6-8bd0-b4f99bbc13a1	.	ZNF141-90	NM_003441	exon4	c.G943A	p.E315K	TGTGAAGAATGTG	.	61	13	54	1	.	43	28	15	0	0	A	367169	G	A	367169	3	1	36	1	0	0	0	0	1	0	0	0	17767	943	33	3	957	3	ZNF141	4	367169	Missense_Mutation	SNP	G	TCGA-OR-A5KU-01A-11D-A29I-10		367169	190787107	21	8355										
ZNF141	7700	bcgsc.ca	37	chr4	367199	367199	+	Missense_Mutation	SNP	A	A	T													0.0101010101010101	1	1	0.230776972624799	0	0.289812942366026	1	1	0	aagcctttaataggtccacaAcccttactaaacataagaga					rs114931928	byfrequency	TCGA-OR-A5KU-01A-11D-A29I-10	TCGA-OR-A5KU-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e9652ca0-126e-4332-909a-4e2d2fc489ef	68f72637-d9e1-41a6-8bd0-b4f99bbc13a1	.	ZNF141-90	NM_003441	exon4	c.A973T	p.T325S	TCCACAACCCTTA	.	52	17	33	1	A|0.881;T|0.119	0	0	0	0	0	T	367199	A	T	367199	3	4	36	1	0	0	0	0	1	0	0	0	17767	43	2	5	987	5	ZNF141	4	367199	Missense_Mutation	SNP	A	TCGA-OR-A5KU-01A-11D-A29I-10	30	367199	190787077	22	8356	88	3								
ZNF141	7700	bcgsc.ca	37	chr4	367201	367201	+	Silent	SNP	C	C	A													0.0101010101010101	1	1	0.230776972624799	0	0.289812942366026	1	1	0	gcctttaataggtccacaacCcttactaaacataagagaat					rs111394409		TCGA-OR-A5KU-01A-11D-A29I-10	TCGA-OR-A5KU-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e9652ca0-126e-4332-909a-4e2d2fc489ef	68f72637-d9e1-41a6-8bd0-b4f99bbc13a1	.	ZNF141-90	NM_003441	exon4	c.C975A	p.T325T	CACAACCCTTACT	.	52	17	33	1	A|1.000;|0.000	0	0	0	0	0	A	367201	C	A	367201	2	1	36	1	0	0	0	0	0	0	0	1	17767	610	22	3		3	ZNF141	4	367201	Silent	SNP	C	TCGA-OR-A5KU-01A-11D-A29I-10	2	367201	190787075	23	8357	88	3								
ZNF141	7700	bcgsc.ca	37	chr4	367206	367206	+	Missense_Mutation	SNP	C	C	G													0.0101010101010101	1	1	0.230776972624799	0	0.289812942366026	1	1	0	taataggtccacaacccttaCtaaacataagagaattcata					rs113884485		TCGA-OR-A5KU-01A-11D-A29I-10	TCGA-OR-A5KU-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e9652ca0-126e-4332-909a-4e2d2fc489ef	68f72637-d9e1-41a6-8bd0-b4f99bbc13a1	.	ZNF141-90	NM_003441	exon4	c.C980G	p.T327S	CCCTTACTAAACA	.	51	17	33	1	G|1.000;|0.000	0	0	0	0	0	G	367206	C	G	367206	3	3	36	1	0	0	0	0	1	0	0	0	17767	565	20	3	994	3	ZNF141	4	367206	Missense_Mutation	SNP	C	TCGA-OR-A5KU-01A-11D-A29I-10	5	367206	190787070	24	8358	88	3								
IDUA	3425	broad.mit.edu	37	chr4	996204	996204	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0101010101010101	1	1	0.230776972624799	0	0.289812942366026	1	1	0	cgcgcttccaggtcaacaacAcccgcccgccgcacgtgcag	10	19	1	0	novel		TCGA-OR-A5KU-01A-11D-A29I-10	TCGA-OR-A5KU-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e9652ca0-126e-4332-909a-4e2d2fc489ef	68f72637-d9e1-41a6-8bd0-b4f99bbc13a1	.	IDUA-91	NM_000203	exon8	c.A1120C	p.T374P	AACAACACCCGCC	.	224	87	50	3	.	15	10	5	0	0	C	996204	A	C	996204	3	2	36	1	0	0	0	0	1	0	0	0	7525	159	6	5	1150	5	IDUA	4	996204	Missense_Mutation	SNP	A	TCGA-OR-A5KU-01A-11D-A29I-10	628998	996204	190158072	25	8359										
CRIPAK	285464	hgsc.bcm.edu	37	chr4	1388974	1388974	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0101010101010101	1	1	0.230776972624799	0	0.289812942366026	1	1	0	cgcctgctcacacgtgccgaTgcggagtgcccgcctgctca	12	17	2	0	rs71614969	bycluster	TCGA-OR-A5KU-01A-11D-A29I-10	TCGA-OR-A5KU-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e9652ca0-126e-4332-909a-4e2d2fc489ef	68f72637-d9e1-41a6-8bd0-b4f99bbc13a1	.	CRIPAK-90	NM_175918	exon1	c.T675C	p.D225D	TGCCGATGCGGAG	.	8	5	1	0	C|1.000;|0.000	31	19	12	0	0	C	1388974	T	C	1388974	2	2	36	1	0	0	0	0	0	0	0	1	3883	1461	51	4		4	CRIPAK	4	1388974	Silent	SNP	T	TCGA-OR-A5KU-01A-11D-A29I-10	392770	1388974	189765302	26	8360										
HTRA3	94031	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	8293291	8293291	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0101010101010101	1	1	0.230776972624799	0	0.289812942366026	1	1	0	cagacggatgccatcatcaaCgtgagtcccagggacaggag	13	11	2	2	novel		TCGA-OR-A5KU-01A-11D-A29I-10	TCGA-OR-A5KU-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e9652ca0-126e-4332-909a-4e2d2fc489ef	68f72637-d9e1-41a6-8bd0-b4f99bbc13a1	.	HTRA3-91	NM_053044	exon4	c.C903T	p.N301N	CATCAACGTGAGT	.	128	51	116	0	.	0	0	0	0	0	T	8293291	C	T	8293291	2	4	36	1	0	0	0	0	0	0	0	1	7476	550	19	1		1	HTRA3	4	8293291	Silent	SNP	C	TCGA-OR-A5KU-01A-11D-A29I-10	6904317	8293291	182860985	27	8361										
NR3C2	4306	broad.mit.edu	37	chr4	149356630	149356630	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0101010101010101	1	1	0.230776972624799	0	0.289812942366026	1	1	0	gaataatagtctttatcatcCataaaggaaaaatacgagcc	6	7	2	0	novel		TCGA-OR-A5KU-01A-11D-A29I-10	TCGA-OR-A5KU-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e9652ca0-126e-4332-909a-4e2d2fc489ef	68f72637-d9e1-41a6-8bd0-b4f99bbc13a1	.	NR3C2-154	NM_001166104	exon2	c.G1383A	p.M461I	ATCATCCATAAAG	.	41	3	31	0	.	1	1	0	0	0	T	149356630	C	T	149356630	3	4	36	1	0	0	0	0	1	0	0	0	10660	594	21	3	1603	3	NR3C2	4	149356630	Missense_Mutation	SNP	C	TCGA-OR-A5KU-01A-11D-A29I-10	141063339	149356630	41797646	28	8362										
EGFLAM	133584	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr5	38435283	38435283	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0101010101010101	1	1	0.230776972624799	0	0.289812942366026	1	1	0	aacacagacattttcattggCggagtccccaattatgatga	8	9	1	3	novel		TCGA-OR-A5KU-01A-11D-A29I-10	TCGA-OR-A5KU-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e9652ca0-126e-4332-909a-4e2d2fc489ef	68f72637-d9e1-41a6-8bd0-b4f99bbc13a1	.	EGFLAM-187	NM_001205301	exon16	c.C2211T	p.G737G	CATTGGCGGAGTC	.	97	7	68	0	.	0	0	0	0	0	T	38435283	C	T	38435283	2	4	36	1	0	0	0	0	0	0	0	1	4977	755	27	1		1	EGFLAM	5	38435283	Silent	SNP	C	TCGA-OR-A5KU-01A-11D-A29I-10		38435283	142479977	29	8363										
NRG2	9542	hgsc.bcm.edu	37	chr5	139227532	139227532	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0101010101010101	1	1	0.230776972624799	0	0.289812942366026	1	1	0	gccgagtcctgcttggcccgCgggggcggcccgcggctgtg	19	15	0	0	novel		TCGA-OR-A5KU-01A-11D-A29I-10	TCGA-OR-A5KU-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e9652ca0-126e-4332-909a-4e2d2fc489ef	68f72637-d9e1-41a6-8bd0-b4f99bbc13a1	.	NRG2-526	NM_013982	exon11	c.G2547A	p.P849P	GGCCCGCGGGGGC	.	16	8	0	0	.	1	0	1	0	0	T	139227532	C	T	139227532	2	4	36	1	0	0	0	0	0	0	0	1	10677	755	27	1		1	NRG2	5	139227532	Silent	SNP	C	TCGA-OR-A5KU-01A-11D-A29I-10	100792249	139227532	41687728	30	8364										
ARL10	285598	hgsc.bcm.edu	37	chr5	175792605	175792605	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0101010101010101	1	1	0.230776972624799	0	0.289812942366026	1	1	0	ggccccttggtgctggcgctGggcggcgccgcggcggtgct	20	14	0	0	rs2303667		TCGA-OR-A5KU-01A-11D-A29I-10	TCGA-OR-A5KU-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e9652ca0-126e-4332-909a-4e2d2fc489ef	68f72637-d9e1-41a6-8bd0-b4f99bbc13a1	.	ARL10-91	NM_173664	exon1	c.G39C	p.L13L	GGCGCTGGGCGGC	.	11	10	0	0	G|0.585;C|0.415	0	0	0	0	0	C	175792605	G	C	175792605	2	2	36	1	0	0	0	0	0	0	0	1	926	1335	47	3		3	ARL10	5	175792605	Silent	SNP	G	TCGA-OR-A5KU-01A-11D-A29I-10	36565073	175792605	5122655	31	8365										
BTNL9	153579	hgsc.bcm.edu	37	chr5	180486404	180486404	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0101010101010101	1	1	0.230776972624799	0	0.289812942366026	1	1	0	agcggttctccgccggccgcCactactgggaggtgcacgtg	15	14	1	0	rs186444058		TCGA-OR-A5KU-01A-11D-A29I-10	TCGA-OR-A5KU-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e9652ca0-126e-4332-909a-4e2d2fc489ef	68f72637-d9e1-41a6-8bd0-b4f99bbc13a1	.	BTNL9-91	NM_152547	exon11	c.C1150T	p.H384Y	GGCCGCCACTACT	.	19	16	0	0	C|0.983;T|0.017	0	0	0	0	0	T	180486404	C	T	180486404	3	4	36	1	0	0	0	0	1	0	0	0	1571	594	21	3	1188	3	BTNL9	5	180486404	Missense_Mutation	SNP	C	TCGA-OR-A5KU-01A-11D-A29I-10	4693799	180486404	428856	32	8366										
MUC21	394263	bcgsc.ca	37	chr6	30954298	30954298	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0101010101010101	1	1	0.230776972624799	0	0.289812942366026	1	1	0	agtccagcacaacctccagtGgggccagcacagccaccaac	9	17	0	0	novel		TCGA-OR-A5KU-01A-11D-A29I-10	TCGA-OR-A5KU-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e9652ca0-126e-4332-909a-4e2d2fc489ef	68f72637-d9e1-41a6-8bd0-b4f99bbc13a1	.	MUC21-92	NM_001010909	exon2	c.G346A	p.G116R	TCCAGTGGGGCCA	.	278	16	318	6	.	0	0	0	0	0	A	30954298	G	A	30954298	3	1	36	1	0	0	0	0	1	0	0	0	10005	1348	47	3	352	3	MUC21	6	30954298	Missense_Mutation	SNP	G	TCGA-OR-A5KU-01A-11D-A29I-10		30954298	140160769	33	8367										
PEX6	5190	hgsc.bcm.edu	37	chr6	42946490	42946490	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0101010101010101	1	1	0.230776972624799	0	0.289812942366026	1	1	0	tccagcacccgcggtccgggCactgggagggtctctccgcg	15	16	1	0	rs9462858	byfrequency	TCGA-OR-A5KU-01A-11D-A29I-10	TCGA-OR-A5KU-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e9652ca0-126e-4332-909a-4e2d2fc489ef	68f72637-d9e1-41a6-8bd0-b4f99bbc13a1	.	PEX6-91	NM_000287	exon1	c.G399T	p.V133V	TCCGGGCACTGGG	.	5	5	0	0	C|0.673;A|0.327	1	0	1	0	0	A	42946490	C	A	42946490	2	1	36	1	0	0	0	0	0	0	0	1	11779	697	25	3		3	PEX6	6	42946490	Silent	SNP	C	TCGA-OR-A5KU-01A-11D-A29I-10	11992192	42946490	128168577	34	8368										
GJA1	2697	broad.mit.edu	37	chr6	121768897	121768897	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0101010101010101	1	1	0.230776972624799	0	0.289812942366026	1	1	0	attcttcttgccgcaattacAacaagcaagcaagtgagcaa	7	10	2	1	rs2227884		TCGA-OR-A5KU-01A-11D-A29I-10	TCGA-OR-A5KU-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e9652ca0-126e-4332-909a-4e2d2fc489ef	68f72637-d9e1-41a6-8bd0-b4f99bbc13a1	.	GJA1-92	NM_000165	exon2	c.A904G	p.N302D	AATTACAACAAGC	.	68	5	83	0	.	30	30	0	0	0	G	121768897	A	G	121768897	3	3	36	1	0	0	0	0	1	0	0	0	6420	130	5	4	906	4	GJA1	6	121768897	Missense_Mutation	SNP	A	TCGA-OR-A5KU-01A-11D-A29I-10	78822407	121768897	49346170	35	8369										
CTGF	1490	hgsc.bcm.edu	37	chr6	132271952	132271952	+	Missense_Mutation	SNP	G	G	C													0.0101010101010101	1	1	0.230776972624799	0	0.289812942366026	1	1	0	gttggccggggagccgaagtGacagaataggcccttgtgcg					rs7451102		TCGA-OR-A5KU-01A-11D-A29I-10	TCGA-OR-A5KU-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e9652ca0-126e-4332-909a-4e2d2fc489ef	68f72637-d9e1-41a6-8bd0-b4f99bbc13a1	.	CTGF-90	NM_001901	exon2	c.C247G	p.H83D	CGAAGTGACAGAA	.	4	4	0	0	G|0.000;C|1.000	0	0	0	0	0	C	132271952	G	C	132271952	3	2	36	1	0	0	0	0	1	0	0	0	4014	1290	45	3	818	3	CTGF	6	132271952	Missense_Mutation	SNP	G	TCGA-OR-A5KU-01A-11D-A29I-10	10503055	132271952	38843115	36	8370	89	2	1	39		3	2	29	N	T_G	8.954035e-05
CTGF	1490	hgsc.bcm.edu	37	chr6	132271959	132271959	+	Silent	SNP	T	T	G													0.0101010101010101	1	1	0.230776972624799	0	0.289812942366026	1	1	0	ggggagccgaagtgacagaaTaggcccttgtgcgggtcgca					rs12206231		TCGA-OR-A5KU-01A-11D-A29I-10	TCGA-OR-A5KU-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e9652ca0-126e-4332-909a-4e2d2fc489ef	68f72637-d9e1-41a6-8bd0-b4f99bbc13a1	.	CTGF-90	NM_001901	exon2	c.A240C	p.L80L	ACAGAATAGGCCC	.	4	4	0	0	T|0.000;G|1.000	0	0	0	0	0	G	132271959	T	G	132271959	2	3	36	1	0	0	0	0	0	0	0	1	4014	1393	49	5		5	CTGF	6	132271959	Silent	SNP	T	TCGA-OR-A5KU-01A-11D-A29I-10	7	132271959	38843108	37	8371	89	2	1	39		3	2	29	N	T_G	8.954035e-05
CTGF	1490	hgsc.bcm.edu	37	chr6	132271980	132271980	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0101010101010101	1	1	0.230776972624799	0	0.289812942366026	1	1	0	aggcccttgtgcgggtcgcaTgggtcgcgctcggtgcacag	17	12	0	0	rs6934749		TCGA-OR-A5KU-01A-11D-A29I-10	TCGA-OR-A5KU-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e9652ca0-126e-4332-909a-4e2d2fc489ef	68f72637-d9e1-41a6-8bd0-b4f99bbc13a1	.	CTGF-90	NM_001901	exon2	c.A219C	p.P73P	GTCGCATGGGTCG	.	4	4	0	0	T|0.000;G|1.000	1	0	1	0	0	G	132271980	T	G	132271980	2	3	36	1	0	0	0	0	0	0	0	1	4014	1451	51	5		5	CTGF	6	132271980	Silent	SNP	T	TCGA-OR-A5KU-01A-11D-A29I-10	21	132271980	38843087	38	8372			1	39		3	2	29	N	T_G	8.954035e-05
SPAM1	6677	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	123599735	123599735	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0101010101010101	1	1	0.230776972624799	0	0.289812942366026	1	1	0	caacttgagaaaggtggaaaGttcacagtacgtggaaaacc	11	7	1	1	novel		TCGA-OR-A5KU-01A-11D-A29I-10	TCGA-OR-A5KU-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e9652ca0-126e-4332-909a-4e2d2fc489ef	68f72637-d9e1-41a6-8bd0-b4f99bbc13a1	.	SPAM1-94	NM_153189	exon5	c.G1242A	p.K414K	TGGAAAGTTCACA	.	77	12	67	0	.	0	0	0	0	0	A	123599735	G	A	123599735	2	1	36	1	0	0	0	0	0	0	0	1	15023	1020	36	3		3	SPAM1	7	123599735	Silent	SNP	G	TCGA-OR-A5KU-01A-11D-A29I-10		123599735	35538928	39	8373										
RP1L1	94137	hgsc.bcm.edu	37	chr8	10468989	10468989	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0101010101010101	1	1	0.230776972624799	0	0.289812942366026	1	1	0	gtgctttggtggctgctgccGgtgctcccacagctggaaga	15	11	0	1	novel		TCGA-OR-A5KU-01A-11D-A29I-10	TCGA-OR-A5KU-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e9652ca0-126e-4332-909a-4e2d2fc489ef	68f72637-d9e1-41a6-8bd0-b4f99bbc13a1	.	RP1L1-139	NM_178857	exon4	c.C2619T	p.T873T	GCTGCCGGTGCTC	.	22	13	1	0	.	0	0	0	0	0	A	10468989	G	A	10468989	2	1	36	1	0	0	0	0	0	0	0	1	13568	1103	39	1		1	RP1L1	8	10468989	Silent	SNP	G	TCGA-OR-A5KU-01A-11D-A29I-10		10468989	135895033	40	8374										
PCMTD1	115294	bcgsc.ca	37	chr8	52733110	52733110	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0101010101010101	1	1	0.230776972624799	0	0.289812942366026	1	1	0	gctgaggaataagctgattaCccacaaatacgtaagtgtta	9	7	0	2	novel		TCGA-OR-A5KU-01A-11D-A29I-10	TCGA-OR-A5KU-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e9652ca0-126e-4332-909a-4e2d2fc489ef	68f72637-d9e1-41a6-8bd0-b4f99bbc13a1	.	PCMTD1-68	NM_052937	exon6	c.G875A	p.G292D	TGATTACCCACAA	.	242	22	222	3	.	10	10	0	0	0	T	52733110	C	T	52733110	3	4	36	1	0	0	0	0	1	0	0	0	11615	507	18	3	202	3	PCMTD1	8	52733110	Missense_Mutation	SNP	C	TCGA-OR-A5KU-01A-11D-A29I-10	42264121	52733110	93630912	41	8375										
PCMTD1	115294	bcgsc.ca	37	chr8	52733144	52733144	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0101010101010101	1	1	0.230776972624799	0	0.289812942366026	1	1	0	agtgttaattctctgtttaaCtctctttcttttccttttgg	5	8	3	0	rs200246241		TCGA-OR-A5KU-01A-11D-A29I-10	TCGA-OR-A5KU-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e9652ca0-126e-4332-909a-4e2d2fc489ef	68f72637-d9e1-41a6-8bd0-b4f99bbc13a1	.	PCMTD1-68	NM_052937	exon6	c.G841A	p.V281I	GTTTAACTCTCTT	.	277	30	247	3	.	5	5	0	0	0	T	52733144	C	T	52733144	3	4	36	1	0	0	0	0	1	0	0	0	11615	565	20	3	236	3	PCMTD1	8	52733144	Missense_Mutation	SNP	C	TCGA-OR-A5KU-01A-11D-A29I-10	34	52733144	93630878	42	8376										
NSMAF	8439	hgsc.bcm.edu	37	chr8	59571856	59571856	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0101010101010101	1	1	0.230776972624799	0	0.289812942366026	1	1	0	gccgggacctgcactgccggAtagctcggcatgcctcggct	14	15	0	0	rs59606339	byfrequency	TCGA-OR-A5KU-01A-11D-A29I-10	TCGA-OR-A5KU-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e9652ca0-126e-4332-909a-4e2d2fc489ef	68f72637-d9e1-41a6-8bd0-b4f99bbc13a1	.	NSMAF-91	NM_001144772	exon1	c.T50G	p.I17S	TGCCGGATAGCTC	.	14	4	2	0	A|0.754;C|0.246	0	0	0	0	0	C	59571856	A	C	59571856	3	2	36	1	0	0	0	0	1	0	0	0	10703	333	12	5	2920	5	NSMAF	8	59571856	Missense_Mutation	SNP	A	TCGA-OR-A5KU-01A-11D-A29I-10	6838712	59571856	86792166	43	8377										
PLEC	5339	hgsc.bcm.edu	37	chr8	144998190	144998190	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0101010101010101	1	1	0.230776972624799	0	0.289812942366026	1	1	0	gccagctgccgctgcctcgcAgcctccagctcggcctgctc	11	20	0	0	rs2857829	byfrequency	TCGA-OR-A5KU-01A-11D-A29I-10	TCGA-OR-A5KU-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e9652ca0-126e-4332-909a-4e2d2fc489ef	68f72637-d9e1-41a6-8bd0-b4f99bbc13a1	.	PLEC-141	NM_201380	exon31	c.T6318C	p.A2106A	CCTCGCAGCCTCC	.	10	4	0	0	A|0.738;G|0.262	5	4	1	0	0	G	144998190	A	G	144998190	2	3	36	1	0	0	0	0	0	0	0	1	12081	175	7	4		4	PLEC	8	144998190	Silent	SNP	A	TCGA-OR-A5KU-01A-11D-A29I-10	85426334	144998190	1365832	44	8378										
ERMP1	79956	hgsc.bcm.edu	37	chr9	5832728	5832728	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0101010101010101	1	1	0.230776972624799	0	0.289812942366026	1	1	0	aactccccgcggtgtccagcGgccccgcgtagcacgagctg	13	17	0	0	rs1131727	byfrequency	TCGA-OR-A5KU-01A-11D-A29I-10	TCGA-OR-A5KU-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e9652ca0-126e-4332-909a-4e2d2fc489ef	68f72637-d9e1-41a6-8bd0-b4f99bbc13a1	.	ERMP1-69	NM_024896	exon1	c.C300G	p.A100A	TCCAGCGGCCCCG	.	11	11	0	0	G|0.572;C|0.428	3	0	3	0	0	C	5832728	G	C	5832728	2	2	36	1	0	0	0	0	0	0	0	1	5249	1103	39	2		2	ERMP1	9	5832728	Silent	SNP	G	TCGA-OR-A5KU-01A-11D-A29I-10		5832728	135380703	45	8379										
OBP2B	29989	bcgsc.ca	37	chr9	136081319	136081319	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0101010101010101	1	1	0.230776972624799	0	0.289812942366026	1	1	0	ctcaccctagtgttcgggaaCgcagcttcctgcagagacca	10	14	1	1	rs11244035	byfrequency	TCGA-OR-A5KU-01A-11D-A29I-10	TCGA-OR-A5KU-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e9652ca0-126e-4332-909a-4e2d2fc489ef	68f72637-d9e1-41a6-8bd0-b4f99bbc13a1	.	OBP2B-68	NM_014581	exon6	c.G499A	p.V167I	CGGGAACGCAGCT	.	176	8	177	1	C|0.932;T|0.068	0	0	0	0	0	T	136081319	C	T	136081319	3	4	36	1	0	0	0	0	1	0	0	0	10840	536	19	1	17	1	OBP2B	9	136081319	Missense_Mutation	SNP	C	TCGA-OR-A5KU-01A-11D-A29I-10	130248591	136081319	5132112	46	8380										
GPRIN2	9721	hgsc.bcm.edu	37	chr10	47000217	47000217	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0101010101010101	1	1	0.230776972624799	0	0.289812942366026	1	1	0	tgtcatgcagtccctgcggcGccccagctgctgcggctgct	13	16	1	0	rs72780221	byfrequency	TCGA-OR-A5KU-01A-11D-A29I-10	TCGA-OR-A5KU-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e9652ca0-126e-4332-909a-4e2d2fc489ef	68f72637-d9e1-41a6-8bd0-b4f99bbc13a1	.	GPRIN2-90	NM_014696	exon3	c.G1337A	p.R446H	TGCGGCGCCCCAG	.	15	7	0	0	G|0.901;A|0.099	0	0	0	0	0	A	47000217	G	A	47000217	3	1	36	1	0	0	0	0	1	0	0	0	6751	1087	38	1	1339	1	GPRIN2	10	47000217	Missense_Mutation	SNP	G	TCGA-OR-A5KU-01A-11D-A29I-10		47000217	88534530	47	8381										
MUC6	4588	bcgsc.ca	37	chr11	1017249	1017249	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0101010101010101	1	1	0.230776972624799	0	0.289812942366026	1	1	0	ggatgatgaccgtgtgagtaCttggagtcaccaaggaggtg	16	6	1	3	novel		TCGA-OR-A5KU-01A-11D-A29I-10	TCGA-OR-A5KU-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e9652ca0-126e-4332-909a-4e2d2fc489ef	68f72637-d9e1-41a6-8bd0-b4f99bbc13a1	.	MUC6-23	NM_005961	exon31	c.G5552A	p.S1851N	TGAGTACTTGGAG	.	931	52	1009	23	.	0	0	0	0	0	T	1017249	C	T	1017249	3	4	36	1	0	0	0	0	1	0	0	0	10008	565	20	3	1779	3	MUC6	11	1017249	Missense_Mutation	SNP	C	TCGA-OR-A5KU-01A-11D-A29I-10		1017249	133989267	48	8382										
MUC2	4583	hgsc.bcm.edu	37	chr11	1093204	1093204	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0101010101010101	1	1	0.230776972624799	0	0.289812942366026	1	1	0	ccggcacacagtccccaaccCcaacagccatcaccaccacc	4	23	1	0	rs56299570		TCGA-OR-A5KU-01A-11D-A29I-10	TCGA-OR-A5KU-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e9652ca0-126e-4332-909a-4e2d2fc489ef	68f72637-d9e1-41a6-8bd0-b4f99bbc13a1	.	MUC2-90	NM_002457	exon30	c.C5023A	p.P1675T	CCAACCCCAACAG	.	78	5	59	0	.	0	0	0	0	0	A	1093204	C	A	1093204	3	1	36	1	0	0	0	0	1	0	0	0	10003	623	22	3	5141	3	MUC2	11	1093204	Missense_Mutation	SNP	C	TCGA-OR-A5KU-01A-11D-A29I-10	75955	1093204	133913312	49	8383										
MUC5B	727897	hgsc.bcm.edu	37	chr11	1250946	1250946	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0101010101010101	1	1	0.230776972624799	0	0.289812942366026	1	1	0	tgctggatgacatcacgcacTctggctgcctgcccctcggg	12	15	2	1	novel		TCGA-OR-A5KU-01A-11D-A29I-10	TCGA-OR-A5KU-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e9652ca0-126e-4332-909a-4e2d2fc489ef	68f72637-d9e1-41a6-8bd0-b4f99bbc13a1	.	.	NM_002458	exon10	c.T1129A	p.S377T	ACGCACTCTGGCT	.	25	21	0	0	.	0	0	0	0	0	A	1250946	T	A	1250946	3	1	36	1	0	0	0	0	1	0	0	0	10007	1551	54	5	1176	5	MUC5B	11	1250946	Missense_Mutation	SNP	T	TCGA-OR-A5KU-01A-11D-A29I-10	157742	1250946	133755570	50	8384										
COPB1	1315	broad.mit.edu;bcgsc.ca	37	chr11	14490270	14490270	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0101010101010101	1	1	0.230776972624799	0	0.289812942366026	1	1	0	gatctgctgcctctttcctcTgtgtgttacccattgctgcc	8	14	3	0	novel		TCGA-OR-A5KU-01A-11D-A29I-10	TCGA-OR-A5KU-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e9652ca0-126e-4332-909a-4e2d2fc489ef	68f72637-d9e1-41a6-8bd0-b4f99bbc13a1	.	COPB1-91	NM_001144062	exon16	c.A2102G	p.Q701R	TTCCTCTGTGTGT	.	79	5	97	0	.	36	35	1	0	0	C	14490270	T	C	14490270	3	2	36	1	0	0	0	0	1	0	0	0	3734	1580	55	4	787	4	COPB1	11	14490270	Missense_Mutation	SNP	T	TCGA-OR-A5KU-01A-11D-A29I-10	13239324	14490270	120516246	51	8385										
INSC	387755	bcgsc.ca	37	chr11	15199912	15199912	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0101010101010101	1	1	0.230776972624799	0	0.289812942366026	1	1	0	catgtcctgaagtcaatgaaGgcctgcgtgagtgagaccct	12	10	1	4	rs199801018		TCGA-OR-A5KU-01A-11D-A29I-10	TCGA-OR-A5KU-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e9652ca0-126e-4332-909a-4e2d2fc489ef	68f72637-d9e1-41a6-8bd0-b4f99bbc13a1	.	INSC-94	NM_001031853	exon5	c.G639T	p.K213N	AATGAAGGCCTGC	.	53	4	40	0	G|0.999;T|0.001	0	0	0	0	0	T	15199912	G	T	15199912	3	4	36	1	0	0	0	0	1	0	0	0	7785	991	35	3	657	3	INSC	11	15199912	Missense_Mutation	SNP	G	TCGA-OR-A5KU-01A-11D-A29I-10	709642	15199912	119806604	52	8386										
LGALS12	85329	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	63276354	63276354	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0101010101010101	1	1	0.230776972624799	0	0.289812942366026	1	1	0	caagccccatgtcatctgcaAcaccctgcatggtggacgct	9	15	2	0	novel		TCGA-OR-A5KU-01A-11D-A29I-10	TCGA-OR-A5KU-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e9652ca0-126e-4332-909a-4e2d2fc489ef	68f72637-d9e1-41a6-8bd0-b4f99bbc13a1	.	LGALS12-92	NM_001142535	exon3	c.A332G	p.N111S	TCTGCAACACCCT	.	133	36	112	0	.	0	0	0	0	0	G	63276354	A	G	63276354	3	3	36	1	0	0	0	0	1	0	0	0	8761	43	2	4	342	4	LGALS12	11	63276354	Missense_Mutation	SNP	A	TCGA-OR-A5KU-01A-11D-A29I-10	48076442	63276354	71730162	53	8387										
EHBP1L1	254102	broad.mit.edu;bcgsc.ca	37	chr11	65358004	65358004	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0101010101010101	1	1	0.230776972624799	0	0.289812942366026	1	1	0	gaggtgctgatccaggagtgGttcaccctggtcaacaagaa	13	9	2	2	novel		TCGA-OR-A5KU-01A-11D-A29I-10	TCGA-OR-A5KU-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e9652ca0-126e-4332-909a-4e2d2fc489ef	68f72637-d9e1-41a6-8bd0-b4f99bbc13a1	.	EHBP1L1-69	NM_001099409	exon16	c.G4224T	p.W1408C	GGAGTGGTTCACC	.	48	5	60	0	.	2	2	0	0	0	T	65358004	G	T	65358004	3	4	36	1	0	0	0	0	1	0	0	0	4987	1270	44	3	4286	3	EHBP1L1	11	65358004	Missense_Mutation	SNP	G	TCGA-OR-A5KU-01A-11D-A29I-10	2081650	65358004	69648512	54	8388										
CCDC67	159989	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	93088643	93088643	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0101010101010101	1	1	0.230776972624799	0	0.289812942366026	1	1	0	agatgcgggctttggagacaCgattagatcttcgggatcaa	13	7	2	3	novel		TCGA-OR-A5KU-01A-11D-A29I-10	TCGA-OR-A5KU-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e9652ca0-126e-4332-909a-4e2d2fc489ef	68f72637-d9e1-41a6-8bd0-b4f99bbc13a1	.	CCDC67-91	NM_181645	exon3	c.C136T	p.R46X	GAGACACGATTAG	.	119	84	150	0	.	0	0	0	0	0	T	93088643	C	T	93088643	4	4	36	1	0	0	0	0	0	1	0	0	2845	528	19	1	142	1	CCDC67	11	93088643	Nonsense_Mutation	SNP	C	TCGA-OR-A5KU-01A-11D-A29I-10	27730639	93088643	41917873	55	8389										
PTS	5805	broad.mit.edu	37	chr11	112097182	112097182	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0101010101010101	1	1	0.230776972624799	0	0.289812942366026	1	1	0	ggaagatgagcacggaaggtGgtggccgtcgctgccaggca	18	9	0	2	novel		TCGA-OR-A5KU-01A-11D-A29I-10	TCGA-OR-A5KU-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e9652ca0-126e-4332-909a-4e2d2fc489ef	68f72637-d9e1-41a6-8bd0-b4f99bbc13a1	.	PTS-90	NM_000317	exon1	c.G16T	p.G6C	GAAGGTGGTGGCC	.	142	4	33	0	.	30	30	0	0	0	T	112097182	G	T	112097182	3	4	36	1	0	0	0	0	1	0	0	0	12853	1348	47	3	18	3	PTS	11	112097182	Missense_Mutation	SNP	G	TCGA-OR-A5KU-01A-11D-A29I-10	19008539	112097182	22909334	56	8390										
AICDA	57379	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	8759524	8759524	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0101010101010101	1	1	0.230776972624799	0	0.289812942366026	1	1	0	ctgtcacgcctcttcactacGtagcacaggtaggtctcacg	9	14	4	0	novel		TCGA-OR-A5KU-01A-11D-A29I-10	TCGA-OR-A5KU-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e9652ca0-126e-4332-909a-4e2d2fc489ef	68f72637-d9e1-41a6-8bd0-b4f99bbc13a1	.	AICDA-229	NM_020661	exon2	c.C93T	p.Y31Y	CACTACGTAGCAC	.	217	110	133	0	.	0	0	0	0	0	A	8759524	G	A	8759524	2	1	36	1	0	0	0	0	0	0	0	1	422	1140	40	1		1	AICDA	12	8759524	Silent	SNP	G	TCGA-OR-A5KU-01A-11D-A29I-10		8759524	125092371	57	8391										
PKP2	5318	hgsc.bcm.edu	37	chr12	33049590	33049590	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0101010101010101	1	1	0.230776972624799	0	0.289812942366026	1	1	0	cagcgccaggctggagctgtCcagttgtcccaggatctgct	13	13	1	0	rs143004808		TCGA-OR-A5KU-01A-11D-A29I-10	TCGA-OR-A5KU-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e9652ca0-126e-4332-909a-4e2d2fc489ef	68f72637-d9e1-41a6-8bd0-b4f99bbc13a1	.	PKP2-92	NM_004572	exon1	c.G76A	p.D26N	AGCTGTCCAGTTG	.	20	13	2	0	C|0.997;T|0.003	2	2	0	0	0	T	33049590	C	T	33049590	3	4	36	1	0	0	0	0	1	0	0	0	12014	855	30	3	2625	3	PKP2	12	33049590	Missense_Mutation	SNP	C	TCGA-OR-A5KU-01A-11D-A29I-10	24290066	33049590	100802305	58	8392										
NAV3	89795	broad.mit.edu;bcgsc.ca	37	chr12	78392165	78392165	+	Silent	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.0101010101010101	1	1	0.230776972624799	0	0.289812942366026	1	1	0	gcaggaagcagcagcaaggtCcagggagcctctaatttaaa	12	9	1	0	novel		TCGA-OR-A5KU-01A-11D-A29I-10	TCGA-OR-A5KU-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e9652ca0-126e-4332-909a-4e2d2fc489ef	68f72637-d9e1-41a6-8bd0-b4f99bbc13a1	.	NAV3-279	NM_014903	exon7	c.C789G	p.V263V	CAAGGTCCAGGGA	.	144	5	81	0	.	0	0	0	0	0	G	78392165	C	G	78392165	2	3	36	1	0	0	0	0	0	0	0	1	10213	842	30	3		3	NAV3	12	78392165	Silent	SNP	C	TCGA-OR-A5KU-01A-11D-A29I-10	45342575	78392165	55459730	59	8393										
NCOR2	9612	hgsc.bcm.edu	37	chr12	124819002	124819002	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0101010101010101	1	1	0.230776972624799	0	0.289812942366026	1	1	0	tcgctgtggggggagccacgGgccggggcaccatggtccgg	20	12	0	0	rs201853086		TCGA-OR-A5KU-01A-11D-A29I-10	TCGA-OR-A5KU-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e9652ca0-126e-4332-909a-4e2d2fc489ef	68f72637-d9e1-41a6-8bd0-b4f99bbc13a1	.	NCOR2-229	NM_006312	exon43	c.C6573G	p.A2191A	GCCACGGGCCGGG	.	91	36	3	0	G|0.998;C|0.002	45	24	21	0	0	C	124819002	G	C	124819002	2	2	36	1	0	0	0	0	0	0	0	1	10265	1219	43	3		3	NCOR2	12	124819002	Silent	SNP	G	TCGA-OR-A5KU-01A-11D-A29I-10	46426837	124819002	9032893	60	8394										
TPTE2	93492	bcgsc.ca	37	chr13	20056686	20056686	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0101010101010101	1	1	0.230776972624799	0	0.289812942366026	1	1	0	cttggaaagtcgttctaacaTactttagccaccaaaaaaaa	5	9	1	0	rs201542496		TCGA-OR-A5KU-01A-11D-A29I-10	TCGA-OR-A5KU-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e9652ca0-126e-4332-909a-4e2d2fc489ef	68f72637-d9e1-41a6-8bd0-b4f99bbc13a1	.	TPTE2-92	NM_199254	exon5	c.A121G	p.M41V	CTAACATACTTTA	.	164	6	291	2	.	0	0	0	0	0	C	20056686	T	C	20056686	3	2	36	1	0	0	0	0	1	0	0	0	16469	1420	49	4	1515	4	TPTE2	13	20056686	Missense_Mutation	SNP	T	TCGA-OR-A5KU-01A-11D-A29I-10		20056686	95113192	61	8395										
ZNF219	51222	hgsc.bcm.edu	37	chr14	21560706	21560706	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0101010101010101	1	1	0.230776972624799	0	0.289812942366026	1	1	0	gttgcctcacgttcgggctcCggctccggctccggctgggg	16	15	1	0	rs1065496	byfrequency	TCGA-OR-A5KU-01A-11D-A29I-10	TCGA-OR-A5KU-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e9652ca0-126e-4332-909a-4e2d2fc489ef	68f72637-d9e1-41a6-8bd0-b4f99bbc13a1	.	ZNF219-90	NM_001102454	exon3	c.G750C	p.P250P	GGGCTCCGGCTCC	.	23	20	2	0	C|0.100;G|0.900	19	0	19	0	0	G	21560706	C	G	21560706	2	3	36	1	0	0	0	0	0	0	0	1	17810	639	23	2		2	ZNF219	14	21560706	Silent	SNP	C	TCGA-OR-A5KU-01A-11D-A29I-10		21560706	85788834	62	8396										
PNN	5411	broad.mit.edu	37	chr14	39649736	39649736	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0101010101010101	1	1	0.230776972624799	0	0.289812942366026	1	1	0	aaggtagacgcatcgaatttGcagaacaaataaataaaatg	8	5	0	2	novel		TCGA-OR-A5KU-01A-11D-A29I-10	TCGA-OR-A5KU-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e9652ca0-126e-4332-909a-4e2d2fc489ef	68f72637-d9e1-41a6-8bd0-b4f99bbc13a1	.	PNN-91	NM_002687	exon9	c.G823T	p.A275S	GAATTTGCAGAAC	.	82	5	81	0	.	8	8	0	0	0	T	39649736	G	T	39649736	3	4	36	1	0	0	0	0	1	0	0	0	12189	1319	46	3	857	3	PNN	14	39649736	Missense_Mutation	SNP	G	TCGA-OR-A5KU-01A-11D-A29I-10	18089030	39649736	67699804	63	8397										
GALK2	2585	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr15	49611899	49611899	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0101010101010101	1	1	0.230776972624799	0	0.289812942366026	1	1	0	gtgaagaagcacctgaaaacAtggtccagctgctgggagag	14	8	0	4	novel		TCGA-OR-A5KU-01A-11D-A29I-10	TCGA-OR-A5KU-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e9652ca0-126e-4332-909a-4e2d2fc489ef	68f72637-d9e1-41a6-8bd0-b4f99bbc13a1	.	GALK2-160	NM_002044	exon9	c.A1066G	p.M356V	GAAAACATGGTCC	.	162	79	134	0	.	14	6	8	0	0	G	49611899	A	G	49611899	3	3	36	1	0	0	0	0	1	0	0	0	6224	217	8	4	1124	4	GALK2	15	49611899	Missense_Mutation	SNP	A	TCGA-OR-A5KU-01A-11D-A29I-10		49611899	52919493	64	8398										
FAM63B	54629	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr15	59102553	59102553	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0101010101010101	1	1	0.230776972624799	0	0.289812942366026	1	1	0	agtatttgatcttcttgataTtcctttgtaccatgggtggt	9	6	2	2	novel		TCGA-OR-A5KU-01A-11D-A29I-10	TCGA-OR-A5KU-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e9652ca0-126e-4332-909a-4e2d2fc489ef	68f72637-d9e1-41a6-8bd0-b4f99bbc13a1	.	FAM63B-90	NM_001040450	exon4	c.T1088C	p.I363T	TTGATATTCCTTT	.	146	35	132	0	.	1	1	0	0	0	C	59102553	T	C	59102553	3	2	36	1	0	0	0	0	1	0	0	0	5616	1493	52	4	1102	4	FAM63B	15	59102553	Missense_Mutation	SNP	T	TCGA-OR-A5KU-01A-11D-A29I-10	9490654	59102553	43428839	65	8399										
LACTB	114294	hgsc.bcm.edu	37	chr15	63414083	63414083	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0101010101010101	1	1	0.230776972624799	0	0.289812942366026	1	1	0	gagacgccatgtaccggctcAtgtcagcagtgactgcccgg	13	13	2	2	rs34317102	byfrequency	TCGA-OR-A5KU-01A-11D-A29I-10	TCGA-OR-A5KU-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e9652ca0-126e-4332-909a-4e2d2fc489ef	68f72637-d9e1-41a6-8bd0-b4f99bbc13a1	.	LACTB-90	NM_171846	exon1	c.A13C	p.M5L	CGGCTCATGTCAG	.	6	5	0	0	A|0.226;C|0.774	1	0	1	0	0	C	63414083	A	C	63414083	3	2	36	1	0	0	0	0	1	0	0	0	8619	217	8	5	15	5	LACTB	15	63414083	Missense_Mutation	SNP	A	TCGA-OR-A5KU-01A-11D-A29I-10	4311530	63414083	39117309	66	8400										
IGDCC4	57722	hgsc.bcm.edu;broad.mit.edu	37	chr15	65688115	65688116	+	In_Frame_Ins	INS	-	-	GCC													0.0101010101010101	1	1	0.230776972624799	0	0.289812942366026	1	1	0	ttctggtagtggagagagaaINSgccgatgatctgctcgctgt					novel		TCGA-OR-A5KU-01A-11D-A29I-10	TCGA-OR-A5KU-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e9652ca0-126e-4332-909a-4e2d2fc489ef	68f72637-d9e1-41a6-8bd0-b4f99bbc13a1	.	IGDCC4-93	NM_020962	exon7	c.1384_1385insGGC	p.F462delinsGF	GAGAGAAGCCGAT	.	47	10	8	0	.	0	0	0	0	0	GCC	65688116	-	GCC	65688115	7	5	36	1	0	1	1	0	0	0	0	0	7590	72	3	0	2424	0	IGDCC4	15	65688115	In_Frame_Ins	INS	-	TCGA-OR-A5KU-01A-11D-A29I-10	2274032	65688115	36843277	67	8401										
ADAMTS7	11173	bcgsc.ca	37	chr15	79057989	79057989	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0101010101010101	1	1	0.230776972624799	0	0.289812942366026	1	1	0	ccagcccacaccacttgcctCgctccagtttcccgcttgcc	6	21	0	0	rs200769684		TCGA-OR-A5KU-01A-11D-A29I-10	TCGA-OR-A5KU-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e9652ca0-126e-4332-909a-4e2d2fc489ef	68f72637-d9e1-41a6-8bd0-b4f99bbc13a1	.	ADAMTS7-226	NM_014272	exon19	c.G4264A	p.E1422K	TTGCCTCGCTCCA	.	208	21	86	2	C|0.999;T|0.001	0	0	0	0	0	T	79057989	C	T	79057989	3	4	36	1	0	0	0	0	1	0	0	0	271	893	31	1	820	1	ADAMTS7	15	79057989	Missense_Mutation	SNP	C	TCGA-OR-A5KU-01A-11D-A29I-10	13369874	79057989	23473403	68	8402										
PRSS22	64063	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr16	2903974	2903974	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0101010101010101	1	1	0.230776972624799	0	0.289812942366026	1	1	0	tggctgcagacttccgagtcGatgataggaaccttcagctt	11	10	1	2	novel		TCGA-OR-A5KU-01A-11D-A29I-10	TCGA-OR-A5KU-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e9652ca0-126e-4332-909a-4e2d2fc489ef	68f72637-d9e1-41a6-8bd0-b4f99bbc13a1	.	PRSS22-90	NM_022119	exon5	c.C609T	p.I203I	CGAGTCGATGATA	.	117	21	81	0	.	0	0	0	0	0	A	2903974	G	A	2903974	2	1	36	1	0	0	0	0	0	0	0	1	12651	1048	37	1		1	PRSS22	16	2903974	Silent	SNP	G	TCGA-OR-A5KU-01A-11D-A29I-10		2903974	87450779	69	8403										
MEFV	4210	hgsc.bcm.edu	37	chr16	3304573	3304573	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0101010101010101	1	1	0.230776972624799	0	0.289812942366026	1	1	0	tgcgcgtccaggccctccgaGgccttctctctgcgtttgct	11	16	2	0	rs224223	byfrequency	TCGA-OR-A5KU-01A-11D-A29I-10	TCGA-OR-A5KU-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e9652ca0-126e-4332-909a-4e2d2fc489ef	68f72637-d9e1-41a6-8bd0-b4f99bbc13a1	.	MEFV-228	NM_000243	exon2	c.C495A	p.A165A	CTCCGAGGCCTTC	.	11	6	0	0	G|0.570;T|0.430	0	0	0	0	0	T	3304573	G	T	3304573	2	4	36	1	0	0	0	0	0	0	0	1	9487	987	35	3		3	MEFV	16	3304573	Silent	SNP	G	TCGA-OR-A5KU-01A-11D-A29I-10	400599	3304573	87050180	70	8404										
ZNF174	7727	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	3454512	3454512	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0101010101010101	1	1	0.230776972624799	0	0.289812942366026	1	1	0	gaactgccagactttcaaccGcagactcctaggagagatct	9	12	2	3	rs140705448	byfrequency	TCGA-OR-A5KU-01A-11D-A29I-10	TCGA-OR-A5KU-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e9652ca0-126e-4332-909a-4e2d2fc489ef	68f72637-d9e1-41a6-8bd0-b4f99bbc13a1	.	ZNF174-90	NM_001032292	exon2	c.G489A	p.P163P	TCAACCGCAGACT	.	96	15	91	1	G|1.000;A|0.000	13	9	4	0	0	A	3454512	G	A	3454512	2	1	36	1	0	0	0	0	0	0	0	1	17781	1074	38	1		1	ZNF174	16	3454512	Silent	SNP	G	TCGA-OR-A5KU-01A-11D-A29I-10	149939	3454512	86900241	71	8405										
ITGAL	3683	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr16	30492905	30492905	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0101010101010101	1	1	0.230776972624799	0	0.289812942366026	1	1	0	tggtgccatcaattatgtcgCgtgagttcccttttgcagga	11	9	1	1	novel		TCGA-OR-A5KU-01A-11D-A29I-10	TCGA-OR-A5KU-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e9652ca0-126e-4332-909a-4e2d2fc489ef	68f72637-d9e1-41a6-8bd0-b4f99bbc13a1	.	ITGAL-994	NM_002209	exon7	c.C722T	p.A241V	ATGTCGCGTGAGT	.	199	33	140	0	.	0	0	0	0	0	T	30492905	C	T	30492905	3	4	36	1	0	0	0	0	1	0	0	0	7907	782	27	1	748	1	ITGAL	16	30492905	Missense_Mutation	SNP	C	TCGA-OR-A5KU-01A-11D-A29I-10	27038393	30492905	59861848	72	8406										
CCDC102A	92922	hgsc.bcm.edu	37	chr16	57562804	57562804	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0101010101010101	1	1	0.230776972624799	0	0.289812942366026	1	1	0	ggcagtgcagtccgaccaccGgcgcatggtcttctccatct	11	15	3	0	rs12935069		TCGA-OR-A5KU-01A-11D-A29I-10	TCGA-OR-A5KU-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e9652ca0-126e-4332-909a-4e2d2fc489ef	68f72637-d9e1-41a6-8bd0-b4f99bbc13a1	.	CCDC102A-91	NM_033212	exon2	c.C286T	p.R96W	ACCACCGGCGCAT	.	4	4	0	0	G|0.001;A|0.999	0	0	0	0	0	A	57562804	G	A	57562804	3	1	36	1	0	0	0	0	1	0	0	0	2742	1115	39	1	1398	1	CCDC102A	16	57562804	Missense_Mutation	SNP	G	TCGA-OR-A5KU-01A-11D-A29I-10	27069899	57562804	32791949	73	8407										
CRK	1398	bcgsc.ca	37	chr17	1359363	1359363	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0101010101010101	1	1	0.230776972624799	0	0.289812942366026	1	1	0	cgcctcctgccgactcaaccTcccccagtaccagctactcc	5	22	1	0	rs2229075	byfrequency	TCGA-OR-A5KU-01A-11D-A29I-10	TCGA-OR-A5KU-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e9652ca0-126e-4332-909a-4e2d2fc489ef	68f72637-d9e1-41a6-8bd0-b4f99bbc13a1	.	CRK-1270	NM_016823	exon1	c.A49C	p.R17R	TCAACCTCCCCCA	.	59	49	8	0	T|0.151;G|0.509;C|0.239;A|0.100	0	0	0	0	0	G	1359363	T	G	1359363	2	3	36	1	0	0	0	0	0	0	0	1	3890	1550	54	5		5	CRK	17	1359363	Silent	SNP	T	TCGA-OR-A5KU-01A-11D-A29I-10		1359363	79835847	74	8408										
NT5M	56953	hgsc.bcm.edu;ucsc.edu	37	chr17	17250223	17250223	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0101010101010101	1	1	0.230776972624799	0	0.289812942366026	1	1	0	ggctgcactcgtgggcggacGactggaaggccattctggac	16	11	1	0	novel		TCGA-OR-A5KU-01A-11D-A29I-10	TCGA-OR-A5KU-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e9652ca0-126e-4332-909a-4e2d2fc489ef	68f72637-d9e1-41a6-8bd0-b4f99bbc13a1	.	NT5M-90	NM_020201	exon5	c.G649T	p.D217Y	GCGGACGACTGGA	.	41	4	18	0	.	4	4	0	0	0	T	17250223	G	T	17250223	3	4	36	1	0	0	0	0	1	0	0	0	10723	1058	37	2	667	2	NT5M	17	17250223	Missense_Mutation	SNP	G	TCGA-OR-A5KU-01A-11D-A29I-10	15890860	17250223	63944987	75	8409										
AATK	9625	hgsc.bcm.edu	37	chr17	79096115	79096115	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0101010101010101	1	1	0.230776972624799	0	0.289812942366026	1	1	0	gcagtcagggtcgtggccggCggcgggtgcggcctcctcta	18	13	2	0	rs61738821	byfrequency	TCGA-OR-A5KU-01A-11D-A29I-10	TCGA-OR-A5KU-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e9652ca0-126e-4332-909a-4e2d2fc489ef	68f72637-d9e1-41a6-8bd0-b4f99bbc13a1	.	AATK-933	NM_001080395	exon11	c.G1621A	p.A541T	GGCCGGCGGCGGG	.	8	8	0	0	C|0.850;T|0.150	0	0	0	0	0	T	79096115	C	T	79096115	3	4	36	1	0	0	0	0	1	0	0	0	26	768	27	1	2519	1	AATK	17	79096115	Missense_Mutation	SNP	C	TCGA-OR-A5KU-01A-11D-A29I-10	61845892	79096115	2099095	76	8410										
AATK	9625	hgsc.bcm.edu	37	chr17	79096352	79096352	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0101010101010101	1	1	0.230776972624799	0	0.289812942366026	1	1	0	caccgtcagcacgtcgtcgcCgtccgcgtggaagccgtcgc	13	17	1	0	novel		TCGA-OR-A5KU-01A-11D-A29I-10	TCGA-OR-A5KU-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e9652ca0-126e-4332-909a-4e2d2fc489ef	68f72637-d9e1-41a6-8bd0-b4f99bbc13a1	.	AATK-933	NM_001080395	exon11	c.G1384A	p.G462S	CGTCGCCGTCCGC	.	27	21	2	0	.	0	0	0	0	0	T	79096352	C	T	79096352	3	4	36	1	0	0	0	0	1	0	0	0	26	652	23	1	2756	1	AATK	17	79096352	Missense_Mutation	SNP	C	TCGA-OR-A5KU-01A-11D-A29I-10	237	79096352	2098858	77	8411										
NEDD4L	23327	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr18	56035075	56035075	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0101010101010101	1	1	0.230776972624799	0	0.289812942366026	1	1	0	gaagagttgctggtctggccGtatttcatgggaagctctta	13	7	3	1	novel		TCGA-OR-A5KU-01A-11D-A29I-10	TCGA-OR-A5KU-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e9652ca0-126e-4332-909a-4e2d2fc489ef	68f72637-d9e1-41a6-8bd0-b4f99bbc13a1	.	NEDD4L-658	NM_001144967	exon22	c.G2161A	p.V721I	CTGGCCGTATTTC	.	172	21	199	0	.	0	0	0	0	0	A	56035075	G	A	56035075	3	1	36	1	0	0	0	0	1	0	0	0	10340	1145	40	1	2275	1	NEDD4L	18	56035075	Missense_Mutation	SNP	G	TCGA-OR-A5KU-01A-11D-A29I-10		56035075	22042173	78	8412										
PMAIP1	5366	hgsc.bcm.edu	37	chr18	57567464	57567464	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0101010101010101	1	1	0.230776972624799	0	0.289812942366026	1	1	0	cgagccccgcgcgggctccaGcaggtaccgacccgctgggg	16	17	0	0	novel		TCGA-OR-A5KU-01A-11D-A29I-10	TCGA-OR-A5KU-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e9652ca0-126e-4332-909a-4e2d2fc489ef	68f72637-d9e1-41a6-8bd0-b4f99bbc13a1	.	PMAIP1-658	NM_021127	exon1	c.G55C	p.A19P	GCTCCAGCAGGTA	.	34	29	3	0	.	0	0	0	0	0	C	57567464	G	C	57567464	3	2	36	1	0	0	0	0	1	0	0	0	12159	971	34	3	57	3	PMAIP1	18	57567464	Missense_Mutation	SNP	G	TCGA-OR-A5KU-01A-11D-A29I-10	1532389	57567464	20509784	79	8413										
ARID3A	1820	hgsc.bcm.edu	37	chr19	929753	929753	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0101010101010101	1	1	0.230776972624799	0	0.289812942366026	1	1	0	gctgcgggcctgggacacccAgccagccccggcggctctga	15	17	1	1	rs1799595		TCGA-OR-A5KU-01A-11D-A29I-10	TCGA-OR-A5KU-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e9652ca0-126e-4332-909a-4e2d2fc489ef	68f72637-d9e1-41a6-8bd0-b4f99bbc13a1	.	ARID3A-90	NM_005224	exon2	c.A225G	p.P75P	ACACCCAGCCAGC	.	7	7	0	0	A|0.114;G|0.886	8	0	8	0	0	G	929753	A	G	929753	2	3	36	1	0	0	0	0	0	0	0	1	916	175	7	4		4	ARID3A	19	929753	Silent	SNP	A	TCGA-OR-A5KU-01A-11D-A29I-10		929753	58199230	80	8414										
MATK	4145	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	3778527	3778527	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0101010101010101	1	1	0.230776972624799	0	0.289812942366026	1	1	0	cattttagggtacggagcccGtccatatgagaagacctccc	10	12	0	2	novel		TCGA-OR-A5KU-01A-11D-A29I-10	TCGA-OR-A5KU-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e9652ca0-126e-4332-909a-4e2d2fc489ef	68f72637-d9e1-41a6-8bd0-b4f99bbc13a1	.	MATK-521	NM_002378	exon13	c.C1267T	p.R423W	GAGCCCGTCCATA	.	211	45	85	0	.	0	0	0	0	0	A	3778527	G	A	3778527	3	1	36	1	0	0	0	0	1	0	0	0	9360	1144	40	1	267	1	MATK	19	3778527	Missense_Mutation	SNP	G	TCGA-OR-A5KU-01A-11D-A29I-10	2848774	3778527	55350456	81	8415										
C19orf10	56005	hgsc.bcm.edu	37	chr19	4670313	4670313	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0101010101010101	1	1	0.230776972624799	0	0.289812942366026	1	1	0	cgcggcccacaagctcgcgcCgacgccgttccaccctccgc	10	22	0	0	rs2270090	byfrequency	TCGA-OR-A5KU-01A-11D-A29I-10	TCGA-OR-A5KU-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e9652ca0-126e-4332-909a-4e2d2fc489ef	68f72637-d9e1-41a6-8bd0-b4f99bbc13a1	.	C19orf10-90	NM_019107	exon1	c.G34C	p.G12R	TCGCGCCGACGCC	.	9	4	0	0	C|0.752;G|0.248	6	2	4	0	0	G	4670313	C	G	4670313	3	3	36	1	0	0	0	0	1	0	0	0	1914	652	23	2	511	2	C19orf10	19	4670313	Missense_Mutation	SNP	C	TCGA-OR-A5KU-01A-11D-A29I-10	891786	4670313	54458670	82	8416										
CACNA1A	773	hgsc.bcm.edu	37	chr19	13319693	13319693	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0101010101010101	1	1	0.230776972624799	0	0.289812942366026	1	1	0	tccttgtcggggggcgggggAtggtggtggtggtggtggtg	25	4	0	0	rs16051	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-OR-A5KU-01A-11D-A29I-10	TCGA-OR-A5KU-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e9652ca0-126e-4332-909a-4e2d2fc489ef	68f72637-d9e1-41a6-8bd0-b4f99bbc13a1	.	CACNA1A-67	NM_001127221	exon46	c.T6660C	p.H2220H	CGGGGGATGGTGG	.	23	9	0	0	A|0.360;G|0.640	0	0	0	0	0	G	13319693	A	G	13319693	2	3	36	1	0	0	0	0	0	0	0	1	2544	330	12	4		4	CACNA1A	19	13319693	Silent	SNP	A	TCGA-OR-A5KU-01A-11D-A29I-10	8649380	13319693	45809290	83	8417										
RAB8A	4218	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	16222725	16222725	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0101010101010101	1	1	0.230776972624799	0	0.289812942366026	1	1	0	gtgtaatatggcgaagacctAcgattacctgttcaagctgc	10	9	1	1	novel		TCGA-OR-A5KU-01A-11D-A29I-10	TCGA-OR-A5KU-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e9652ca0-126e-4332-909a-4e2d2fc489ef	68f72637-d9e1-41a6-8bd0-b4f99bbc13a1	.	RAB8A-227	NM_005370	exon1	c.A14G	p.Y5C	AGACCTACGATTA	.	105	40	84	0	.	3	1	2	0	0	G	16222725	A	G	16222725	3	3	36	1	0	0	0	0	1	0	0	0	12991	391	14	4	16	4	RAB8A	19	16222725	Missense_Mutation	SNP	A	TCGA-OR-A5KU-01A-11D-A29I-10	2903032	16222725	42906258	84	8418										
CRTC1	23373	hgsc.bcm.edu	37	chr19	18879375	18879375	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0101010101010101	1	1	0.230776972624799	0	0.289812942366026	1	1	0	gcgggctcccagcagccaccGccgcagccccagcccccgcc	11	24	0	0	novel		TCGA-OR-A5KU-01A-11D-A29I-10	TCGA-OR-A5KU-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e9652ca0-126e-4332-909a-4e2d2fc489ef	68f72637-d9e1-41a6-8bd0-b4f99bbc13a1	.	CRTC1-1361	NM_001098482	exon11	c.G1140A	p.P380P	GCCACCGCCGCAG	.	26	13	0	0	.	2	1	1	0	0	A	18879375	G	A	18879375	2	1	36	1	0	0	0	0	0	0	0	1	3905	1074	38	1		1	CRTC1	19	18879375	Silent	SNP	G	TCGA-OR-A5KU-01A-11D-A29I-10	2656650	18879375	40249608	85	8419										
DMKN	93099	hgsc.bcm.edu	37	chr19	36002386	36002386	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0101010101010101	1	1	0.230776972624799	0	0.289812942366026	1	1	0	tgccaccactgctgccgccaCtgctgccgccactgctgctg	10	19	0	0	rs117522133	byfrequency	TCGA-OR-A5KU-01A-11D-A29I-10	TCGA-OR-A5KU-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e9652ca0-126e-4332-909a-4e2d2fc489ef	68f72637-d9e1-41a6-8bd0-b4f99bbc13a1	.	DMKN-155	NM_001126058	exon5	c.G845A	p.S282N	CCGCCACTGCTGC	.	92	19	78	0	C|0.945;T|0.055	0	0	0	0	0	T	36002386	C	T	36002386	3	4	36	1	0	0	0	0	1	0	0	0	4593	565	20	3	950	3	DMKN	19	36002386	Missense_Mutation	SNP	C	TCGA-OR-A5KU-01A-11D-A29I-10	17123011	36002386	23126597	86	8420			2	40		2	2	28	N	C_-	8.634262e-05
DMKN	93099	bcgsc.ca	37	chr19	36002413	36002414	+	Frame_Shift_Ins	INS	-	-	CCAGGAGGACTCACTGCCGCTGTCACCTCTGCTGCCACCACTGTTGCCAC													0.0101010101010101	1	1	0.230776972624799	0	0.289812942366026	1	1	0	gccactgctgctgccactgcINStgctgccaccactgctgctg					novel		TCGA-OR-A5KU-01A-11D-A29I-10	TCGA-OR-A5KU-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e9652ca0-126e-4332-909a-4e2d2fc489ef	68f72637-d9e1-41a6-8bd0-b4f99bbc13a1	.	DMKN-155	NM_001126058	exon5	c.818_819insGTGGCAACAGTGGTGGCAGCAGAGGTGACAGCGGCAGTGAGTCCTCCTGG	p.S273fs	CCACTGCTGCTGC	.	108	0	72	0	.	0	0	0	0	0	CCAGGAGGACTCACTGCCGCTGTCACCTCTGCTGCCACCACTGTTGCCAC	36002414	-	CCAGGAGGACTCACTGCCGCTGTCACCTCTGCTGCCACCACTGTTGCCAC	36002413	7	5	36	1	0	1	1	0	0	0	0	0	4593	797	28	0	977	0	DMKN	19	36002413	Frame_Shift_Ins	INS	-	TCGA-OR-A5KU-01A-11D-A29I-10	27	36002413	23126570	87	8421			2	40		2	2	28	N	C_-	8.634262e-05
FBXO17	115290	hgsc.bcm.edu	37	chr19	39440918	39440918	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0101010101010101	1	1	0.230776972624799	0	0.289812942366026	1	1	0	agcgcgtccagggccagggaTgggtccgccggcagccgtcg	18	14	0	0	rs2304117	byfrequency	TCGA-OR-A5KU-01A-11D-A29I-10	TCGA-OR-A5KU-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e9652ca0-126e-4332-909a-4e2d2fc489ef	68f72637-d9e1-41a6-8bd0-b4f99bbc13a1	.	FBXO17-226	NM_148169	exon2	c.A69G	p.P23P	CAGGGATGGGTCC	.	22	8	0	0	T|0.545;C|0.455	1	0	1	0	0	C	39440918	T	C	39440918	2	2	36	1	0	0	0	0	0	0	0	1	5749	1451	51	4		4	FBXO17	19	39440918	Silent	SNP	T	TCGA-OR-A5KU-01A-11D-A29I-10	3438505	39440918	19688065	88	8422										
NTN5	126147	hgsc.bcm.edu	37	chr19	49164952	49164952	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0101010101010101	1	1	0.230776972624799	0	0.289812942366026	1	1	0	gtctagtgctccggcctgggActgggtgtgggtgcccgcac	17	12	1	0	rs281392	byfrequency	TCGA-OR-A5KU-01A-11D-A29I-10	TCGA-OR-A5KU-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e9652ca0-126e-4332-909a-4e2d2fc489ef	68f72637-d9e1-41a6-8bd0-b4f99bbc13a1	.	NTN5-136	NM_145807	exon7	c.T1452C	p.S484S	CCTGGGACTGGGT	.	8	8	0	0	A|0.464;G|0.536	3	0	3	0	0	G	49164952	A	G	49164952	2	3	36	1	0	0	0	0	0	0	0	1	10732	272	10	4		4	NTN5	19	49164952	Silent	SNP	A	TCGA-OR-A5KU-01A-11D-A29I-10	9724034	49164952	9964031	89	8423										
RASIP1	54922	hgsc.bcm.edu	37	chr19	49232226	49232226	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0101010101010101	1	1	0.230776972624799	0	0.289812942366026	1	1	0	cttgatgagccgggccaggcGgcccagcagtcgtggcaggt	17	12	0	2	rs2287922		TCGA-OR-A5KU-01A-11D-A29I-10	TCGA-OR-A5KU-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e9652ca0-126e-4332-909a-4e2d2fc489ef	68f72637-d9e1-41a6-8bd0-b4f99bbc13a1	.	RASIP1-228	NM_017805	exon5	c.C1801T	p.R601C	CCAGGCGGCCCAG	.	6	4	0	0	G|0.738;A|0.262	2	0	2	0	0	A	49232226	G	A	49232226	3	1	36	1	0	0	0	0	1	0	0	0	13113	1116	39	1	1122	1	RASIP1	19	49232226	Missense_Mutation	SNP	G	TCGA-OR-A5KU-01A-11D-A29I-10	67274	49232226	9896757	90	8424										
NR1H2	7376	ucsc.edu	37	chr19	50881825	50881825	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0101010101010101	1	1	0.230776972624799	0	0.289812942366026	1	1	0	aagaagaagattcggaaacaGcagcaggagtcacagtcaca	11	8	2	3	rs55817866	byfrequency	TCGA-OR-A5KU-01A-11D-A29I-10	TCGA-OR-A5KU-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e9652ca0-126e-4332-909a-4e2d2fc489ef	68f72637-d9e1-41a6-8bd0-b4f99bbc13a1	.	NR1H2-186	NM_007121	exon6	c.G519A	p.Q173Q	GAAACAGCAGCAG	.	112	5	64	0	G|0.903;A|0.097	0	0	0	0	0	A	50881825	G	A	50881825	2	1	36	1	0	0	0	0	0	0	0	1	10646	962	34	3		3	NR1H2	19	50881825	Silent	SNP	G	TCGA-OR-A5KU-01A-11D-A29I-10	1649599	50881825	8247158	91	8425										
EPN1	29924	hgsc.bcm.edu	37	chr19	56203229	56203229	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0101010101010101	1	1	0.230776972624799	0	0.289812942366026	1	1	0	tgccgtccccacggctgcccCcacctcggacccctggggcg	12	21	0	0	rs199806653		TCGA-OR-A5KU-01A-11D-A29I-10	TCGA-OR-A5KU-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e9652ca0-126e-4332-909a-4e2d2fc489ef	68f72637-d9e1-41a6-8bd0-b4f99bbc13a1	.	.	NM_001130071	exon7	c.C1130T	p.P377L	CTGCCCCCACCTC	.	40	22	1	0	C|0.994;T|0.006	37	14	23	0	0	T	56203229	C	T	56203229	3	4	36	1	0	0	0	0	1	0	0	0	5198	623	22	3	1235	3	EPN1	19	56203229	Missense_Mutation	SNP	C	TCGA-OR-A5KU-01A-11D-A29I-10	5321404	56203229	2925754	92	8426										
RRBP1	6238	broad.mit.edu	37	chr20	17617260	17617260	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0101010101010101	1	1	0.230776972624799	0	0.289812942366026	1	1	0	cacctccttcacgtgctcccGgtagctggcctgcatgcgtg	11	16	1	0	rs137981542	byfrequency;alternate_allele	TCGA-OR-A5KU-01A-11D-A29I-10	TCGA-OR-A5KU-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e9652ca0-126e-4332-909a-4e2d2fc489ef	68f72637-d9e1-41a6-8bd0-b4f99bbc13a1	.	RRBP1-92	NM_004587	exon6	c.C1000A	p.R334R	GCTCCCGGTAGCT	.	142	4	69	0	G|0.999;A|0.001	217	216	0	0	1	T	17617260	G	T	17617260	2	4	36	1	0	0	0	0	0	0	0	1	13713	1115	39	2		2	RRBP1	20	17617260	Silent	SNP	G	TCGA-OR-A5KU-01A-11D-A29I-10		17617260	45408260	93	8427										
ACTR5	79913	hgsc.bcm.edu	37	chr20	37377139	37377139	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0101010101010101	1	1	0.230776972624799	0	0.289812942366026	1	1	0	aagatggcggcgaacgtgttCccgttccgcgacgcccgtgc	14	14	0	1	rs2254105	byfrequency	TCGA-OR-A5KU-01A-11D-A29I-10	TCGA-OR-A5KU-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e9652ca0-126e-4332-909a-4e2d2fc489ef	68f72637-d9e1-41a6-8bd0-b4f99bbc13a1	.	ACTR5-90	NM_024855	exon1	c.C18T	p.F6F	CGTGTTCCCGTTC	.	13	11	0	0	C|0.769;T|0.231	0	0	0	0	0	T	37377139	C	T	37377139	2	4	36	1	0	0	0	0	0	0	0	1	215	854	30	3		3	ACTR5	20	37377139	Silent	SNP	C	TCGA-OR-A5KU-01A-11D-A29I-10	19759879	37377139	25648381	94	8428										
NRIP1	8204	broad.mit.edu	37	chr21	16340849	16340849	+	Splice_Site	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0101010101010101	1	1	0.230776972624799	0	0.289812942366026	1	1	0	aaatgcaaatatcagtgttcTaaaaaaaataaaaataagaa	4	3	2	1	novel		TCGA-OR-A5KU-01A-11D-A29I-10	TCGA-OR-A5KU-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e9652ca0-126e-4332-909a-4e2d2fc489ef	68f72637-d9e1-41a6-8bd0-b4f99bbc13a1	.	NRIP1-186	.	.	.	.	GTGTTCTAAAAAA	.	87	4	47	1	.	0	0	0	0	0	A	16340849	T	A	16340849	5	1	36	1	0	0	0	0	0	0	1	0	10681	1536	53	5		5	NRIP1	21	16340849	Splice_Site	SNP	T	TCGA-OR-A5KU-01A-11D-A29I-10		16340849	31789046	95	8429										
CLIC6	54102	hgsc.bcm.edu	37	chr21	36042579	36042579	+	Missense_Mutation	SNP	C	C	G													0.0101010101010101	1	1	0.230776972624799	0	0.289812942366026	1	1	0	gggtctcgggtgagccgcagCaatcgggggacggcagcctc					rs13049028	byfrequency	TCGA-OR-A5KU-01A-11D-A29I-10	TCGA-OR-A5KU-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e9652ca0-126e-4332-909a-4e2d2fc489ef	68f72637-d9e1-41a6-8bd0-b4f99bbc13a1	.	CLIC6-91	NM_053277	exon1	c.C892G	p.Q298E	CCGCAGCAATCGG	.	22	7	0	0	C|0.802;G|0.198	0	0	0	0	0	G	36042579	C	G	36042579	3	3	36	1	0	0	0	0	1	0	0	0	3536	711	25	3	894	3	CLIC6	21	36042579	Missense_Mutation	SNP	C	TCGA-OR-A5KU-01A-11D-A29I-10	19701730	36042579	12087316	96	8430	90	2								
CLIC6	54102	hgsc.bcm.edu	37	chr21	36042584	36042584	+	Silent	SNP	G	G	A													0.0101010101010101	1	1	0.230776972624799	0	0.289812942366026	1	1	0	tcgggtgagccgcagcaatcGggggacggcagcctctcgcc					rs13049239	byfrequency	TCGA-OR-A5KU-01A-11D-A29I-10	TCGA-OR-A5KU-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e9652ca0-126e-4332-909a-4e2d2fc489ef	68f72637-d9e1-41a6-8bd0-b4f99bbc13a1	.	CLIC6-91	NM_053277	exon1	c.G897A	p.S299S	GCAATCGGGGGAC	.	20	7	0	0	G|0.803;A|0.197	0	0	0	0	0	A	36042584	G	A	36042584	2	1	36	1	0	0	0	0	0	0	0	1	3536	1103	39	1		1	CLIC6	21	36042584	Silent	SNP	G	TCGA-OR-A5KU-01A-11D-A29I-10	5	36042584	12087311	97	8431	90	2								
KRTAP10-7	386675	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr21	46021002	46021002	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0101010101010101	1	1	0.230776972624799	0	0.289812942366026	1	1	0	ccccctgccagcaggcctgcTgtgtgcccatctgctgcaag	11	17	1	0	novel		TCGA-OR-A5KU-01A-11D-A29I-10	TCGA-OR-A5KU-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e9652ca0-126e-4332-909a-4e2d2fc489ef	68f72637-d9e1-41a6-8bd0-b4f99bbc13a1	.	.	NM_198689	exon2	c.T466C	p.C156R	GCCTGCTGTGTGC	.	1047	70	524	0	.	0	0	0	0	0	C	46021002	T	C	46021002	3	2	36	1	0	0	0	0	1	0	0	0	8535	1580	55	4	472	4	KRTAP10-7	21	46021002	Missense_Mutation	SNP	T	TCGA-OR-A5KU-01A-11D-A29I-10	9978418	46021002	2108893	98	8432										
SYNGR1	9145	broad.mit.edu	37	chr22	39777908	39777908	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0101010101010101	1	1	0.230776972624799	0	0.289812942366026	1	1	0	agccccagggctaccagtcgCagggctactgagccacagtg	13	14	0	1	novel		TCGA-OR-A5KU-01A-11D-A29I-10	TCGA-OR-A5KU-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e9652ca0-126e-4332-909a-4e2d2fc489ef	68f72637-d9e1-41a6-8bd0-b4f99bbc13a1	.	SYNGR1-90	NM_004711	exon4	c.C691T	p.Q231X	CAGTCGCAGGGCT	.	108	4	18	0	.	0	0	0	0	0	T	39777908	C	T	39777908	4	4	36	1	0	0	0	0	0	1	0	0	15485	711	25	3	908	3	SYNGR1	22	39777908	Nonsense_Mutation	SNP	C	TCGA-OR-A5KU-01A-11D-A29I-10		39777908	11526658	99	8433										
CCDC22	28952	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	49093667	49093667	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0101010101010101	1	1	0.230776972624799	0	0.289812942366026	1	1	0	gtgggctctggcctcagcccTctgctgcctcttgccatgtc	11	16	4	0	novel		TCGA-OR-A5KU-01A-11D-A29I-10	TCGA-OR-A5KU-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e9652ca0-126e-4332-909a-4e2d2fc489ef	68f72637-d9e1-41a6-8bd0-b4f99bbc13a1	.	CCDC22-130	NM_014008	exon2	c.T165A	p.P55P	CAGCCCTCTGCTG	.	82	25	66	1	.	13	13	0	0	0	A	49093667	T	A	49093667	2	1	36	1	0	0	0	0	0	0	0	1	2803	1538	54	5		5	CCDC22	23	49093667	Silent	SNP	T	TCGA-OR-A5KU-01A-11D-A29I-10		49093667	106176893	100	8434										
BHLHB9	80823	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chrX	102003966	102003967	+	Frame_Shift_Ins	INS	-	-	A													0.0101010101010101	1	1	0.230776972624799	0	0.289812942366026	1	1	0	aagagcccaggccaaaactgINSaaaaaaaggctgctatacaa					novel		TCGA-OR-A5KU-01A-11D-A29I-10	TCGA-OR-A5KU-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e9652ca0-126e-4332-909a-4e2d2fc489ef	68f72637-d9e1-41a6-8bd0-b4f99bbc13a1	.	BHLHB9-132	NM_001142524	exon4	c.43_44insA	p.E15fs	AAAACTGAAAAAA	.	340	75	354	0	.	0	0	0	0	0	A	102003967	-	A	102003966	7	5	36	1	0	1	1	0	0	0	0	0	1421	1291	45	0	45	0	BHLHB9	23	102003966	Frame_Shift_Ins	INS	-	TCGA-OR-A5KU-01A-11D-A29I-10	52910299	102003966	53266594	101	8435										
OCRL	4952	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	128721082	128721082	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0101010101010101	1	1	0.230776972624799	0	0.289812942366026	1	1	0	agtagatcacctattcaaatAcgcctgtcaccaggtaagtg	8	10	3	1	novel		TCGA-OR-A5KU-01A-11D-A29I-10	TCGA-OR-A5KU-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e9652ca0-126e-4332-909a-4e2d2fc489ef	68f72637-d9e1-41a6-8bd0-b4f99bbc13a1	.	OCRL-206	NM_000276	exon20	c.A2243G	p.Y748C	TCAAATACGCCTG	.	299	59	275	1	.	0	0	0	0	0	G	128721082	A	G	128721082	3	3	36	1	0	0	0	0	1	0	0	0	10852	391	14	4	2321	4	OCRL	23	128721082	Missense_Mutation	SNP	A	TCGA-OR-A5KU-01A-11D-A29I-10	26717116	128721082	26549478	102	8436										
CNGA2	1260	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	150912699	150912699	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0101010101010101	1	1	0.230776972624799	0	0.289812942366026	1	1	0	agtcctagaagagaggggtcGggagatcctcatgaaggagg	17	6	1	4	novel		TCGA-OR-A5KU-01A-11D-A29I-10	TCGA-OR-A5KU-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e9652ca0-126e-4332-909a-4e2d2fc489ef	68f72637-d9e1-41a6-8bd0-b4f99bbc13a1	.	CNGA2-193	NM_005140	exon7	c.G1724A	p.R575Q	GGGGTCGGGAGAT	.	166	43	126	1	.	0	0	0	0	0	A	150912699	G	A	150912699	3	1	36	1	0	0	0	0	1	0	0	0	3603	1116	39	1	1746	1	CNGA2	23	150912699	Missense_Mutation	SNP	G	TCGA-OR-A5KU-01A-11D-A29I-10	22191617	150912699	4357861	103	8437										
HES3	390992	hgsc.bcm.edu	37	chr1	6305292	6305292	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0202020202020202	2	1	0.680537862703468	1.276008492569	0.46400308820691	1	1	0	gcctgcgctgccccctggtgCccgagagcgccgccggcagc	15	19	0	1	rs61760836		TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	.	HES3-514	NM_001024598	exon4	c.C286A	p.P96T	CTGGTGCCCGAGA	.	6	6	0	0	C|0.430;A|0.570	0	0	0	0	0	A	6305292	C	A	6305292	3	1	37	1	0	0	0	0	1	0	0	0	7088	739	26	3	296	3	HES3	1	6305292	Missense_Mutation	SNP	C	TCGA-OR-A5KV-01A-11D-A29I-10		6305292	242945329	1	8438										
CNR2	1269	bcgsc.ca	37	chr1	24201357	24201357	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0202020202020202	2	1	0.680537862703468	1.276008492569	0.46400308820691	1	1	0	acagatgaggagcacagccaAcactagccctagggtcttgg	12	11	1	2	rs4649124	byfrequency	TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	.	CNR2-228	NM_001841	exon2	c.T751C	p.L251L	CAGCCAACACTAG	.	203	7	197	4	A|0.358;G|0.642	0	0	0	0	0	G	24201357	A	G	24201357	2	3	37	1	0	0	0	0	0	0	0	1	3638	40	2	4		4	CNR2	1	24201357	Silent	SNP	A	TCGA-OR-A5KV-01A-11D-A29I-10	17896065	24201357	225049264	2	8439										
SFN	2810	broad.mit.edu	37	chr1	27189835	27189835	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0202020202020202	2	1	0.680537862703468	1.276008492569	0.46400308820691	1	1	0	tgcgaagagcgaaacctgctCtcagtagcctataagaacgt	10	10	1	2	novel		TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	.	SFN-658	NM_006142	exon1	c.C132G	p.L44L	CCTGCTCTCAGTA	.	263	7	265	0	.	0	0	0	0	0	G	27189835	C	G	27189835	2	3	37	1	0	0	0	0	0	0	0	1	14194	900	32	3		3	SFN	1	27189835	Silent	SNP	C	TCGA-OR-A5KV-01A-11D-A29I-10	2988478	27189835	222060786	3	8440										
OPRD1	4985	hgsc.bcm.edu	37	chr1	29138975	29138975	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0202020202020202	2	1	0.680537862703468	1.276008492569	0.46400308820691	1	1	0	ggacgcctaccctagcgcctGccccagcgctggcgccaatg	12	18	0	0	rs1042114	byfrequency	TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	.	OPRD1-69	NM_000911	exon1	c.G80T	p.C27F	GCGCCTGCCCCAG	.	7	7	0	0	G|0.061;T|0.939	0	0	0	0	0	T	29138975	G	T	29138975	3	4	37	1	0	0	0	0	1	0	0	0	10913	1319	46	3	82	3	OPRD1	1	29138975	Missense_Mutation	SNP	G	TCGA-OR-A5KV-01A-11D-A29I-10	1949140	29138975	220111646	4	8441										
PRPF38A	84950	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	52878204	52878204	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0202020202020202	2	1	0.680537862703468	1.276008492569	0.46400308820691	1	1	0	agaaacgctatgtattagagGaagctgagcaactggagcct	12	7	0	3	novel		TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	.	PRPF38A-90	NM_032864	exon5	c.G517A	p.E173K	TTAGAGGAAGCTG	.	98	7	115	0	.	50	47	3	0	0	A	52878204	G	A	52878204	3	1	37	1	0	0	0	0	1	0	0	0	12599	1175	41	3	535	3	PRPF38A	1	52878204	Missense_Mutation	SNP	G	TCGA-OR-A5KV-01A-11D-A29I-10	23739229	52878204	196372417	5	8442										
RSBN1	54665	hgsc.bcm.edu	37	chr1	114354654	114354654	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0202020202020202	2	1	0.680537862703468	1.276008492569	0.46400308820691	1	1	0	acagttggggctgcattcgtTggcggcagcggcccaggatg	17	10	0	0	rs3195954	byfrequency	TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	.	RSBN1-91	NM_018364	exon1	c.A381G	p.P127P	ATTCGTTGGCGGC	.	19	7	4	0	T|0.861;C|0.139	0	0	0	0	0	C	114354654	T	C	114354654	2	2	37	1	0	0	0	0	0	0	0	1	13731	1799	63	4		4	RSBN1	1	114354654	Silent	SNP	T	TCGA-OR-A5KV-01A-11D-A29I-10	61476450	114354654	134895967	6	8443										
NOTCH2	4853	hgsc.bcm.edu	37	chr1	120611964	120611964	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0202020202020202	2	1	0.680537862703468	1.276008492569	0.46400308820691	1	1	0	tcaccatgcgcgggggccgcGcagcacagccagagcgccag	15	16	1	1	rs11810554	byfrequency	TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	.	NOTCH2-1441	NM_024408	exon1	c.C57G	p.C19W	GGCCGCGCAGCAC	.	7	6	0	0	G|0.680;C|0.320	0	0	0	0	0	C	120611964	G	C	120611964	3	2	37	1	0	0	0	0	1	0	0	0	10577	1079	38	2	7494	2	NOTCH2	1	120611964	Missense_Mutation	SNP	G	TCGA-OR-A5KV-01A-11D-A29I-10	6257310	120611964	128638657	7	8444										
LOR	4014	hgsc.bcm.edu	37	chr1	153233701	153233701	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0202020202020202	2	1	0.680537862703468	1.276008492569	0.46400308820691	1	1	0	gggagcgtcaagtactccggAggcggcggctcctccggcgg	18	13	1	0	rs1143390	bycluster;byfrequency;by1000genomes	TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	.	LOR-90	NM_000427	exon2	c.A276C	p.G92G	CTCCGGAGGCGGC	.	7	6	0	0	A|0.594;C|0.406	0	0	0	0	0	C	153233701	A	C	153233701	2	2	37	1	0	0	0	0	0	0	0	1	8924	291	11	5		5	LOR	1	153233701	Silent	SNP	A	TCGA-OR-A5KV-01A-11D-A29I-10	32621737	153233701	96016920	8	8445										
CENPF	1063	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	214816610	214816610	+	Silent	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.0202020202020202	2	1	0.680537862703468	1.276008492569	0.46400308820691	1	1	0	gagctggaagtagcacgactCcagctacaaggtctggactt	12	10	1	0	novel		TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	.	CENPF-567	NM_016343	exon12	c.C4929G	p.L1643L	ACGACTCCAGCTA	.	140	71	145	0	.	1	0	1	0	0	G	214816610	C	G	214816610	2	3	37	1	0	0	0	0	0	0	0	1	3237	842	30	3		3	CENPF	1	214816610	Silent	SNP	C	TCGA-OR-A5KV-01A-11D-A29I-10	61582909	214816610	34434011	9	8446										
OBSCN	84033	hgsc.bcm.edu	37	chr1	228504670	228504670	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0202020202020202	2	1	0.680537862703468	1.276008492569	0.46400308820691	1	1	0	gcgacgccgtggcctctgcgCggctcaccgtgctgggtggg	18	14	2	0	rs11810627	byfrequency	TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	.	OBSCN-403	NM_001271223	exon62	c.C16417T	p.R5473W	TCTGCGCGGCTCA	.	12	9	0	0	C|0.643;T|0.357	1	1	0	0	0	T	228504670	C	T	228504670	3	4	37	1	0	0	0	0	1	0	0	0	10841	759	27	1	13744	1	OBSCN	1	228504670	Missense_Mutation	SNP	C	TCGA-OR-A5KV-01A-11D-A29I-10	13688060	228504670	20745951	10	8447										
RYR2	6262	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	237811822	237811822	+	Frame_Shift_Del	DEL	G	G	-													0.0202020202020202	2	1	0.680537862703468	1.276008492569	0.46400308820691	1	1	0	catggttttattccttgacaGggtctatgggattgaggttc					novel		TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	.	RYR2-158	NM_001035	exon49	c.7421delG	p.R2474fs	TTGACAGGGTCTA	.	213	94	217	0	.	0	0	0	0	0	-	237811822	G	-	237811822	7	5	37	1	0	1	0	1	0	0	0	0	13804	1000	35	0	7615	0	RYR2	1	237811822	Frame_Shift_Del	DEL	G	TCGA-OR-A5KV-01A-11D-A29I-10	9307152	237811822	11438799	11	8448										
TPO	7173	hgsc.bcm.edu	37	chr2	1481231	1481231	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0202020202020202	2	1	0.680537862703468	1.276008492569	0.46400308820691	1	1	0	ggccggagacggccgcgccaGcgaggtcccctccctgacgg	16	17	0	2	rs2175977	byfrequency	TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	.	TPO-332	NM_175719	exon8	c.G1193C	p.S398T	GCGCCAGCGAGGT	.	8	4	0	0	G|0.301;C|0.699	0	0	0	0	0	C	1481231	G	C	1481231	3	2	37	1	0	0	0	0	1	0	0	0	16448	971	34	3	1219	3	TPO	2	1481231	Missense_Mutation	SNP	G	TCGA-OR-A5KV-01A-11D-A29I-10		1481231	241718142	12	8449										
MYT1L	23040	bcgsc.ca	37	chr2	1805503	1805503	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0202020202020202	2	1	0.680537862703468	1.276008492569	0.46400308820691	1	1	0	aatcatatcggcttccatctGggaattggattcatttagct	8	8	3	0	novel		TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	.	MYT1L-95	NM_015025	exon23	c.C3235A	p.Q1079K	CCATCTGGGAATT	.	56	4	43	0	.	0	0	0	0	0	T	1805503	G	T	1805503	3	4	37	1	0	0	0	0	1	0	0	0	10135	1357	47	3	331	3	MYT1L	2	1805503	Missense_Mutation	SNP	G	TCGA-OR-A5KV-01A-11D-A29I-10	324272	1805503	241393870	13	8450										
NTSR2	23620	hgsc.bcm.edu	37	chr2	11809650	11809650	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0202020202020202	2	1	0.680537862703468	1.276008492569	0.46400308820691	1	1	0	acctggataaagacttggagCgcggtgcggctcaccagcac	13	12	1	1	rs199659575	byfrequency	TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	.	NTSR2-946	NM_012344	exon1	c.G606C	p.A202A	TTGGAGCGCGGTG	.	20	14	4	0	C|0.994;G|0.006	0	0	0	0	0	G	11809650	C	G	11809650	2	3	37	1	0	0	0	0	0	0	0	1	10740	755	27	2		2	NTSR2	2	11809650	Silent	SNP	C	TCGA-OR-A5KV-01A-11D-A29I-10	10004147	11809650	231389723	14	8451										
TEKT4	150483	ucsc.edu	37	chr2	95542377	95542377	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0202020202020202	2	1	0.680537862703468	1.276008492569	0.46400308820691	1	1	0	tagaagcggagcagtccctgCgcaacctcgaggacatccac	11	14	0	1	rs72817671	byfrequency	TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	.	TEKT4-155	NM_144705	exon6	c.C1171T	p.R391C	TCCCTGCGCAACC	.	72	9	63	6	C|0.704;T|0.296	0	0	0	0	0	T	95542377	C	T	95542377	3	4	37	1	0	0	0	0	1	0	0	0	15792	768	27	1	1193	1	TEKT4	2	95542377	Missense_Mutation	SNP	C	TCGA-OR-A5KV-01A-11D-A29I-10	83732727	95542377	147656996	15	8452										
UBR3	130507	broad.mit.edu;bcgsc.ca	37	chr2	170762566	170762566	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0202020202020202	2	1	0.680537862703468	1.276008492569	0.46400308820691	1	1	0	aacttaaacaagcgagaactAaacgagcatgtggaatttga	9	6	0	2	rs10194785	byfrequency	TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	.	UBR3-68	NM_172070	exon10	c.A1671T	p.L557L	AGAACTAAACGAG	.	92	6	112	1	A|0.748;T|0.252	3	3	0	0	0	T	170762566	A	T	170762566	2	4	37	1	0	0	0	0	0	0	0	1	16941	349	13	5		5	UBR3	2	170762566	Silent	SNP	A	TCGA-OR-A5KV-01A-11D-A29I-10	75220189	170762566	72436807	16	8453										
CCDC150	284992	hgsc.bcm.edu	37	chr2	197531519	197531519	+	Frame_Shift_Del	DEL	A	A	-													0.0202020202020202	2	1	0.680537862703468	1.276008492569	0.46400308820691	1	1	0	agaactactggcccaggaacAaaaaaaaaaagaagagttgg					novel		TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	.	.	NM_001080539	exon7	c.839delA	p.Q280fs	AGGAACAAAAAAA	.	217	15	157	0	.	0	0	0	0	0	-	197531519	A	-	197531519	7	5	37	1	0	1	0	1	0	0	0	0	2791	130	5	0	865	0	CCDC150	2	197531519	Frame_Shift_Del	DEL	A	TCGA-OR-A5KV-01A-11D-A29I-10	26768953	197531519	45667854	17	8454										
ALPPL2	251	hgsc.bcm.edu	37	chr2	233274476	233274476	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0202020202020202	2	1	0.680537862703468	1.276008492569	0.46400308820691	1	1	0	cgcctgcgacctggcgccccGcgccggcaccaccgacgccg	13	22	0	0	rs61730278	byfrequency	TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	.	ALPPL2-91	NM_031313	exon11	c.G1493C	p.R498P	CGCCCCGCGCCGG	.	17	12	0	0	G|0.946;C|0.054	0	0	0	0	0	C	233274476	G	C	233274476	3	2	37	1	0	0	0	0	1	0	0	0	549	1087	38	2	1535	2	ALPPL2	2	233274476	Missense_Mutation	SNP	G	TCGA-OR-A5KV-01A-11D-A29I-10	35742957	233274476	9924897	18	8455										
SNED1	25992	hgsc.bcm.edu	37	chr2	242011084	242011084	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0202020202020202	2	1	0.680537862703468	1.276008492569	0.46400308820691	1	1	0	cccggcgcgcctgccggagcTgcgcctgctcaatgaccaca	12	18	1	1	rs17440466	byfrequency	TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	.	SNED1-72	NM_001080437	exon25	c.T3683C	p.L1228P	CGGAGCTGCGCCT	.	19	10	5	0	T|0.877;C|0.123	10	4	6	0	0	C	242011084	T	C	242011084	3	2	37	1	0	0	0	0	1	0	0	0	14880	1580	55	4	3781	4	SNED1	2	242011084	Missense_Mutation	SNP	T	TCGA-OR-A5KV-01A-11D-A29I-10	8736608	242011084	1188289	19	8456										
CHL1	10752	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	391155	391155	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0202020202020202	2	1	0.680537862703468	1.276008492569	0.46400308820691	1	1	0	gaatgtctcctaccaggacaAaggaaattatcgctgcacag	9	10	1	0	novel		TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	.	CHL1-583	NM_001253388	exon8	c.A962T	p.K321I	AGGACAAAGGAAA	.	134	59	83	0	.	0	0	0	0	0	T	391155	A	T	391155	3	4	37	1	0	0	0	0	1	0	0	0	3355	14	1	5	992	5	CHL1	3	391155	Missense_Mutation	SNP	A	TCGA-OR-A5KV-01A-11D-A29I-10		391155	197631275	20	8457										
SEMA5B	54437	hgsc.bcm.edu	37	chr3	122631896	122631896	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0202020202020202	2	1	0.680537862703468	1.276008492569	0.46400308820691	1	1	0	tgctcccgctgcgcaggaggAcctccaccagggctgcggag	15	15	0	0	rs2276782	byfrequency	TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	.	SEMA5B-157	NM_001256347	exon18	c.T2681A	p.V894D	AGGAGGACCTCCA	.	5	5	0	0	T|0.412;A|0.588	0	0	0	0	0	T	122631896	A	T	122631896	3	4	37	1	0	0	0	0	1	0	0	0	14073	275	10	5	960	5	SEMA5B	3	122631896	Missense_Mutation	SNP	A	TCGA-OR-A5KV-01A-11D-A29I-10	122240741	122631896	75390534	21	8458										
PLXNA1	5361	hgsc.bcm.edu	37	chr3	126733053	126733053	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0202020202020202	2	1	0.680537862703468	1.276008492569	0.46400308820691	1	1	0	tacaagtgcccggccctgcgCgagagctgcggcctctgcct	13	16	1	1	rs11719489	byfrequency	TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	.	PLXNA1-93	NM_032242	exon11	c.C2439T	p.R813R	CCTGCGCGAGAGC	.	21	18	0	0	C|0.900;T|0.100	1	0	1	0	0	T	126733053	C	T	126733053	2	4	37	1	0	0	0	0	0	0	0	1	12148	755	27	1		1	PLXNA1	3	126733053	Silent	SNP	C	TCGA-OR-A5KV-01A-11D-A29I-10	4101157	126733053	71289377	22	8459										
SHOX2	6474	hgsc.bcm.edu	37	chr3	157823581	157823582	+	In_Frame_Ins	INS	-	-	CACCTCCTC													0.0202020202020202	2	1	0.680537862703468	1.276008492569	0.46400308820691	1	1	0	gcctgctcctcctcctcctaINScacctcctccgcctcctccg					novel		TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	.	SHOX2-90	NM_001163678	exon1	c.233_234insGAGGAGGTG	p.V78delinsGGGV	CCTCCTACACCTC	.	39	12	19	0	.	0	0	0	0	0	CACCTCCTC	157823582	-	CACCTCCTC	157823581	7	5	37	1	0	1	1	0	0	0	0	0	14324	391	14	0	858	0	SHOX2	3	157823581	In_Frame_Ins	INS	-	TCGA-OR-A5KV-01A-11D-A29I-10	31090528	157823581	40198849	23	8460										
TNIP2	79155	hgsc.bcm.edu	37	chr4	2757800	2757800	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0202020202020202	2	1	0.680537862703468	1.276008492569	0.46400308820691	1	1	0	tcgcagctgctcccggaagcGcgcaacctgctccagcagcg	12	17	0	0	rs74548850	byfrequency	TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	.	TNIP2-90	NM_024309	exon1	c.C217G	p.R73G	GGAAGCGCGCAAC	.	15	8	0	0	G|0.957;C|0.043	1	1	0	0	0	C	2757800	G	C	2757800	3	2	37	1	0	0	0	0	1	0	0	0	16352	1087	38	2	1096	2	TNIP2	4	2757800	Missense_Mutation	SNP	G	TCGA-OR-A5KV-01A-11D-A29I-10		2757800	188396476	24	8461										
CCDC96	257236	hgsc.bcm.edu	37	chr4	7044357	7044357	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0202020202020202	2	1	0.680537862703468	1.276008492569	0.46400308820691	1	1	0	tgggcgggctcctcagccccAacctcggccggctcttcggg	14	17	2	0	rs871133		TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	.	CCDC96-90	NM_153376	exon1	c.T309C	p.V103V	AGCCCCAACCTCG	.	5	5	0	0	A|0.036;G|0.964	0	0	0	0	0	G	7044357	A	G	7044357	2	3	37	1	0	0	0	0	0	0	0	1	2880	117	5	4		4	CCDC96	4	7044357	Silent	SNP	A	TCGA-OR-A5KV-01A-11D-A29I-10	4286557	7044357	184109919	25	8462										
NSUN2	54888	hgsc.bcm.edu	37	chr5	6633042	6633042	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0202020202020202	2	1	0.680537862703468	1.276008492569	0.46400308820691	1	1	0	tcggcgccatcctccgcgtcCtccggccgctgctgttgctg	12	18	0	0	rs10062086	byfrequency	TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	.	NSUN2-91	NM_017755	exon1	c.G51A	p.E17E	CGCGTCCTCCGGC	.	8	7	1	0	C|0.687;T|0.313	6	0	6	0	0	T	6633042	C	T	6633042	2	4	37	1	0	0	0	0	0	0	0	1	10707	680	24	3		3	NSUN2	5	6633042	Silent	SNP	C	TCGA-OR-A5KV-01A-11D-A29I-10		6633042	174282218	26	8463										
NPR3	4883	broad.mit.edu	37	chr5	32712221	32712221	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0202020202020202	2	1	0.680537862703468	1.276008492569	0.46400308820691	1	1	0	gactgtgggaaccgtgcgctCttcagcttggtggaccgcgt	15	11	2	0	novel		TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	.	NPR3-91	NM_000908	exon1	c.C339T	p.L113L	TGCGCTCTTCAGC	.	261	7	141	0	.	0	0	0	0	0	T	32712221	C	T	32712221	2	4	37	1	0	0	0	0	0	0	0	1	10625	900	32	3		3	NPR3	5	32712221	Silent	SNP	C	TCGA-OR-A5KV-01A-11D-A29I-10	26079179	32712221	148203039	27	8464										
C5orf42	65250	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr5	37196023	37196023	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0202020202020202	2	1	0.680537862703468	1.276008492569	0.46400308820691	1	1	0	tgctccaggtctaaaaaatgCgatacctcctttacagtaat	6	10	1	0	novel		TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	.	C5orf42-94	NM_023073	exon21	c.G3748A	p.A1250T	AAAATGCGATACC	.	320	19	342	0	.	1	1	0	0	0	T	37196023	C	T	37196023	3	4	37	1	0	0	0	0	1	0	0	0	2307	768	27	1	5973	1	C5orf42	5	37196023	Missense_Mutation	SNP	C	TCGA-OR-A5KV-01A-11D-A29I-10	4483802	37196023	143719237	28	8465										
RAD17	5884	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	68670480	68670480	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0202020202020202	2	1	0.680537862703468	1.276008492569	0.46400308820691	1	1	0	acttgctgtgcataaaaagaAaattgaagaagtcgaaacct	8	6	0	3	novel		TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	.	RAD17-205	NM_133339	exon3	c.A326T	p.K109I	AAAAGAAAATTGA	.	304	100	266	0	.	3	2	1	0	0	T	68670480	A	T	68670480	3	4	37	1	0	0	0	0	1	0	0	0	13014	14	1	5	349	5	RAD17	5	68670480	Missense_Mutation	SNP	A	TCGA-OR-A5KV-01A-11D-A29I-10	31474457	68670480	112244780	29	8466										
MCC	4163	bcgsc.ca	37	chr5	112458382	112458382	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0202020202020202	2	1	0.680537862703468	1.276008492569	0.46400308820691	1	1	0	caagggcaggcagactcaccCatgtcagcagtaaccatggt	11	12	2	1	novel		TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	.	MCC-69	NM_001085377	exon6	c.G1026A	p.M342I	CTCACCCATGTCA	.	232	108	218	4	.	0	0	0	0	0	T	112458382	C	T	112458382	3	4	37	1	0	0	0	0	1	0	0	0	9401	608	21	3	2089	3	MCC	5	112458382	Missense_Mutation	SNP	C	TCGA-OR-A5KV-01A-11D-A29I-10	43787902	112458382	68456878	30	8467										
STC2	8614	broad.mit.edu	37	chr5	172745086	172745086	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0202020202020202	2	1	0.680537862703468	1.276008492569	0.46400308820691	1	1	0	tctgtccacctggggctggcGctcggggggcgccgtgggag	20	12	1	0	novel		TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	.	STC2-93	NM_003714	exon4	c.C673A	p.R225S	GCTGGCGCTCGGG	.	79	3	87	0	.	58	58	0	0	0	T	172745086	G	T	172745086	3	4	37	1	0	0	0	0	1	0	0	0	15313	1087	38	2	239	2	STC2	5	172745086	Missense_Mutation	SNP	G	TCGA-OR-A5KV-01A-11D-A29I-10	60286704	172745086	8170174	31	8468										
TULP1	7287	bcgsc.ca	37	chr6	35477025	35477025	+	Missense_Mutation	SNP	C	C	G													0.0202020202020202	2	1	0.680537862703468	1.276008492569	0.46400308820691	1	1	0	gctttgcccttttgattgctCttctttatcaccgtagctgc					rs2064318	byfrequency	TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	.	TULP1-92	NM_003322	exon8	c.G783C	p.K261N	ATTGCTCTTCTTT	.	127	8	118	0	C|0.349;G|0.651	0	0	0	0	0	G	35477025	C	G	35477025	3	3	37	1	0	0	0	0	1	0	0	0	16811	912	32	3	877	3	TULP1	6	35477025	Missense_Mutation	SNP	C	TCGA-OR-A5KV-01A-11D-A29I-10		35477025	135638042	32	8469	91	2								
TULP1	7287	bcgsc.ca	37	chr6	35477032	35477032	+	Missense_Mutation	SNP	A	A	G													0.0202020202020202	2	1	0.680537862703468	1.276008492569	0.46400308820691	1	1	0	ccttttgattgctcttctttAtcaccgtagctgcctcctcc					rs2064317	byfrequency	TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	.	TULP1-92	NM_003322	exon8	c.T776C	p.I259T	TTCTTTATCACCG	.	136	5	122	0	A|0.641;G|0.359	0	0	0	0	0	G	35477032	A	G	35477032	3	3	37	1	0	0	0	0	1	0	0	0	16811	449	16	4	884	4	TULP1	6	35477032	Missense_Mutation	SNP	A	TCGA-OR-A5KV-01A-11D-A29I-10	7	35477032	135638035	33	8470	91	2								
ENPP3	5169	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	132014711	132014711	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0202020202020202	2	1	0.680537862703468	1.276008492569	0.46400308820691	1	1	0	cgactgcactatgccaagaaCgtcagaatcgacaaagttca	8	11	2	2	novel		TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	.	ENPP3-95	NM_005021	exon15	c.C1359T	p.N453N	CAAGAACGTCAGA	.	273	108	309	2	.	19	10	9	0	0	T	132014711	C	T	132014711	2	4	37	1	0	0	0	0	0	0	0	1	5144	535	19	1		1	ENPP3	6	132014711	Silent	SNP	C	TCGA-OR-A5KV-01A-11D-A29I-10	96537679	132014711	39100356	34	8471										
GIGYF1	64599	broad.mit.edu	37	chr7	100283970	100283970	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0202020202020202	2	1	0.680537862703468	1.276008492569	0.46400308820691	1	1	0	ccgcccctcctcttcaccacAccctcctcgatcccctcgca	3	25	2	0	novel		TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	.	GIGYF1-136	NM_022574	exon8	c.T781G	p.C261G	CACCACACCCTCC	.	81	14	62	7	.	0	0	0	0	0	C	100283970	A	C	100283970	3	2	37	1	0	0	0	0	1	0	0	0	6397	159	6	5	2394	5	GIGYF1	7	100283970	Missense_Mutation	SNP	A	TCGA-OR-A5KV-01A-11D-A29I-10		100283970	58854693	35	8472										
CPA1	1357	broad.mit.edu	37	chr7	130021608	130021608	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0202020202020202	2	1	0.680537862703468	1.276008492569	0.46400308820691	1	1	0	atgatcgaggacgtgcagtcGctgctggacgaggagcagga	17	8	0	1	novel		TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	.	CPA1-91	NM_001868	exon3	c.G285A	p.S95S	GCAGTCGCTGCTG	.	176	4	179	1	.	0	0	0	0	0	A	130021608	G	A	130021608	2	1	37	1	0	0	0	0	0	0	0	1	3795	1074	38	1		1	CPA1	7	130021608	Silent	SNP	G	TCGA-OR-A5KV-01A-11D-A29I-10	29737638	130021608	29117055	36	8473										
RP1L1	94137	hgsc.bcm.edu	37	chr8	10468964	10468964	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0202020202020202	2	1	0.680537862703468	1.276008492569	0.46400308820691	1	1	0	cgggctcccacctggcccccGggcagtgctttggtggctgc	15	16	0	0	rs148936402		TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	.	RP1L1-139	NM_178857	exon4	c.C2644T	p.R882W	GCCCCCGGGCAGT	.	28	16	1	0	G|0.999;A|0.001	0	0	0	0	0	A	10468964	G	A	10468964	3	1	37	1	0	0	0	0	1	0	0	0	13568	1115	39	1	4562	1	RP1L1	8	10468964	Missense_Mutation	SNP	G	TCGA-OR-A5KV-01A-11D-A29I-10		10468964	135895058	37	8474										
NKX3-1	4824	hgsc.bcm.edu	37	chr8	23540249	23540249	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0202020202020202	2	1	0.680537862703468	1.276008492569	0.46400308820691	1	1	0	tggctccggctccgggtcgcGctgtctctggctgctcgtgc	15	15	1	0	rs2228013	byfrequency	TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	.	NKX3-1-90	NM_006167	exon1	c.C154T	p.R52C	GGTCGCGCTGTCT	.	9	8	0	0	G|0.977;A|0.023	0	0	0	0	0	A	23540249	G	A	23540249	3	1	37	1	0	0	0	0	1	0	0	0	10484	1087	38	1	558	1	NKX3-1	8	23540249	Missense_Mutation	SNP	G	TCGA-OR-A5KV-01A-11D-A29I-10	13071285	23540249	122823773	38	8475										
C8orf22	492307	broad.mit.edu;bcgsc.ca	37	chr8	49985442	49985442	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0202020202020202	2	1	0.680537862703468	1.276008492569	0.46400308820691	1	1	0	agccagaaatcagtattatcGaagtaagttgcatcatcata	7	7	3	1	novel		TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	.	.	NM_001256598	exon2	c.G53A	p.R18Q	ATTATCGAAGTAA	.	213	9	265	1	.	0	0	0	0	0	A	49985442	G	A	49985442	3	1	37	1	0	0	0	0	1	0	0	0	2425	1058	37	1	55	1	C8orf22	8	49985442	Missense_Mutation	SNP	G	TCGA-OR-A5KV-01A-11D-A29I-10	26445193	49985442	96378580	39	8476										
PLEC	5339	hgsc.bcm.edu	37	chr8	145001784	145001784	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0202020202020202	2	1	0.680537862703468	1.276008492569	0.46400308820691	1	1	0	agcctgccagcgctcaagcaActgggcgacccgctcccgcc	11	19	1	0	rs3135109	byfrequency	TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	.	PLEC-141	NM_201380	exon27	c.T3961C	p.L1321L	CAAGCAACTGGGC	.	11	11	0	0	G|0.246;A|0.754	11	0	11	0	0	G	145001784	A	G	145001784	2	3	37	1	0	0	0	0	0	0	0	1	12081	40	2	4		4	PLEC	8	145001784	Silent	SNP	A	TCGA-OR-A5KV-01A-11D-A29I-10	95016342	145001784	1362238	40	8477										
ZNF517	340385	hgsc.bcm.edu	37	chr8	146033347	146033347	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0202020202020202	2	1	0.680537862703468	1.276008492569	0.46400308820691	1	1	0	gggtgcccaggacggcggcgTggggcagggcgccctgctcg	21	13	0	0	rs2976653		TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	.	ZNF517-90	NM_213605	exon5	c.T1046C	p.V349A	GCGGCGTGGGGCA	.	5	5	0	0	G|0.992;C|0.006	4	0	4	0	0	C	146033347	T	C	146033347	3	2	37	1	0	0	0	0	1	0	0	0	17998	1696	59	4	1060	4	ZNF517	8	146033347	Missense_Mutation	SNP	T	TCGA-OR-A5KV-01A-11D-A29I-10	1031563	146033347	330675	41	8478										
RUSC2	9853	broad.mit.edu	37	chr9	35546626	35546626	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0202020202020202	2	1	0.680537862703468	1.276008492569	0.46400308820691	1	1	0	tgtggaggggcaggtggaggTggtgggagcacaagacctaa	20	5	0	1	novel		TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	.	RUSC2-91	NM_014806	exon2	c.T108G	p.G36G	TGGAGGTGGTGGG	.	191	19	203	24	.	0	0	0	0	0	G	35546626	T	G	35546626	2	3	37	1	0	0	0	0	0	0	0	1	13786	1683	59	5		5	RUSC2	9	35546626	Silent	SNP	T	TCGA-OR-A5KV-01A-11D-A29I-10		35546626	105666805	42	8479										
IKBKAP	8518	broad.mit.edu;bcgsc.ca	37	chr9	111674681	111674681	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0202020202020202	2	1	0.680537862703468	1.276008492569	0.46400308820691	1	1	0	ggtatggggtcacagggtccCacatcagagacacaatcttg	12	10	3	1	novel		TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	.	IKBKAP-318	NM_003640	exon11	c.G1052A	p.W351X	GGGTCCCACATCA	.	293	13	260	0	.	8	8	0	0	0	T	111674681	C	T	111674681	4	4	37	1	0	0	0	0	0	1	0	0	7631	595	21	3	3054	3	IKBKAP	9	111674681	Nonsense_Mutation	SNP	C	TCGA-OR-A5KV-01A-11D-A29I-10	76128055	111674681	29538750	43	8480										
SVEP1	79987	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr9	113196694	113196694	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0202020202020202	2	1	0.680537862703468	1.276008492569	0.46400308820691	1	1	0	gttcccgaccagctggaagcCtggatcacagaacagattga	11	11	1	3	novel		TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	.	SVEP1-75	NM_153366	exon30	c.G4981C	p.G1661R	GGAAGCCTGGATC	.	161	59	216	0	.	0	0	0	0	0	G	113196694	C	G	113196694	3	3	37	1	0	0	0	0	1	0	0	0	15457	681	24	3	5810	3	SVEP1	9	113196694	Missense_Mutation	SNP	C	TCGA-OR-A5KV-01A-11D-A29I-10	1522013	113196694	28016737	44	8481										
MUSK	4593	bcgsc.ca	37	chr9	113538122	113538122	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0202020202020202	2	1	0.680537862703468	1.276008492569	0.46400308820691	1	1	0	gcaaaagaatggctggtaatGgaagagaagacccacagagg	14	6	0	4	rs2274419	byfrequency	TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	.	MUSK-1379	NM_005592	exon9	c.G1239A	p.M413I	GGTAATGGAAGAG	.	248	8	237	0	G|0.885;A|0.115	0	0	0	0	0	A	113538122	G	A	113538122	3	1	37	1	0	0	0	0	1	0	0	0	10017	1348	47	3	1309	3	MUSK	9	113538122	Missense_Mutation	SNP	G	TCGA-OR-A5KV-01A-11D-A29I-10	341428	113538122	27675309	45	8482										
SLC2A6	11182	broad.mit.edu	37	chr9	136340732	136340732	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0202020202020202	2	1	0.680537862703468	1.276008492569	0.46400308820691	1	1	0	cagcgccacggcagcaggagGcctgggggcgaggggtgggt	22	10	0	0	novel		TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	.	SLC2A6-90	NM_017585	exon5	c.C564A	p.G188G	CAGGAGGCCTGGG	.	87	8	10	0	.	0	0	0	0	0	T	136340732	G	T	136340732	2	4	37	1	0	0	0	0	0	0	0	1	14584	1217	42	3		3	SLC2A6	9	136340732	Silent	SNP	G	TCGA-OR-A5KV-01A-11D-A29I-10	22802610	136340732	4872699	46	8483										
ABI1	10006	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	27040664	27040664	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0202020202020202	2	1	0.680537862703468	1.276008492569	0.46400308820691	1	1	0	gtggagagtcatcaaacatgGgaatgtcatctggtggaggt	15	5	4	1	novel		TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	.	ABI1-1082	NM_005470	exon11	c.C1214T	p.P405L	AACATGGGAATGT	.	105	46	110	1	.	12	11	1	0	0	A	27040664	G	A	27040664	3	1	37	1	0	0	0	0	1	0	0	0	88	1232	43	3	320	3	ABI1	10	27040664	Missense_Mutation	SNP	G	TCGA-OR-A5KV-01A-11D-A29I-10		27040664	108494083	47	8484										
SYNPO2L	79933	broad.mit.edu	37	chr10	75407622	75407622	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0202020202020202	2	1	0.680537862703468	1.276008492569	0.46400308820691	1	1	0	gcccctgggcctggggcaggCgcctctgggcgcgcagaggg	20	14	1	1	novel		TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	.	SYNPO2L-91	NM_001114133	exon4	c.G1788T	p.A596A	GGCAGGCGCCTCT	.	55	5	28	0	.	0	0	0	0	0	A	75407622	C	A	75407622	2	1	37	1	0	0	0	0	0	0	0	1	15495	755	27	2		2	SYNPO2L	10	75407622	Silent	SNP	C	TCGA-OR-A5KV-01A-11D-A29I-10	48366958	75407622	60127125	48	8485										
ARMS2	387715	bcgsc.ca	37	chr10	124214448	124214448	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0202020202020202	2	1	0.680537862703468	1.276008492569	0.46400308820691	1	1	0	cacactccatgatcccagctGctaaaatccacactgagctc	5	16	0	2	rs10490924	byfrequency	TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	.	ARMS2-1	NM_001099667	exon1	c.G205T	p.A69S	CCAGCTGCTAAAA	.	157	6	137	3	G|0.712;T|0.288	0	0	0	0	0	T	124214448	G	T	124214448	3	4	37	1	0	0	0	0	1	0	0	0	965	1319	46	3	207	3	ARMS2	10	124214448	Missense_Mutation	SNP	G	TCGA-OR-A5KV-01A-11D-A29I-10	48806826	124214448	11320299	49	8486										
CST6	1474	hgsc.bcm.edu	37	chr11	65779590	65779590	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0202020202020202	2	1	0.680537862703468	1.276008492569	0.46400308820691	1	1	0	ctcctggcgctgccacgcgaCgcccgggcccggccgcagga	15	19	0	0	rs1131544		TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	.	CST6-523	NM_001323	exon1	c.C75T	p.D25D	ACGCGACGCCCGG	.	8	7	0	0	C|0.921;T|0.079	1	0	1	0	0	T	65779590	C	T	65779590	2	4	37	1	0	0	0	0	0	0	0	1	3982	535	19	1		1	CST6	11	65779590	Silent	SNP	C	TCGA-OR-A5KV-01A-11D-A29I-10		65779590	69226926	50	8487										
TMEM151A	256472	hgsc.bcm.edu	37	chr11	66062454	66062454	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0202020202020202	2	1	0.680537862703468	1.276008492569	0.46400308820691	1	1	0	ggcgcgcttcttcagcgccaAcgagggcctggacgactatc	13	14	2	0	novel		TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	.	TMEM151A-90	NM_153266	exon2	c.A737G	p.N246S	GCGCCAACGAGGG	.	49	23	3	0	.	8	4	4	0	0	G	66062454	A	G	66062454	3	3	37	1	0	0	0	0	1	0	0	0	16107	43	2	4	743	4	TMEM151A	11	66062454	Missense_Mutation	SNP	A	TCGA-OR-A5KV-01A-11D-A29I-10	282864	66062454	68944062	51	8488										
SORL1	6653	ucsc.edu;bcgsc.ca	37	chr11	121429444	121429444	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0202020202020202	2	1	0.680537862703468	1.276008492569	0.46400308820691	1	1	0	gaccagtggatttactggacGgatgcctacctggagtgcat	13	9	0	0	novel		TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	.	SORL1-228	NM_003105	exon20	c.G2808A	p.T936T	CTGGACGGATGCC	.	294	131	360	2	.	0	0	0	0	0	A	121429444	G	A	121429444	2	1	37	1	0	0	0	0	0	0	0	1	14969	1103	39	1		1	SORL1	11	121429444	Silent	SNP	G	TCGA-OR-A5KV-01A-11D-A29I-10	55366990	121429444	13577072	52	8489										
ETV6	2120	bcgsc.ca	37	chr12	11992168	11992168	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0202020202020202	2	1	0.680537862703468	1.276008492569	0.46400308820691	1	1	0	aggccaattgacagcaacacGtttgaaatgaatggcaaagc	10	8	0	3	rs11611479	byfrequency	TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	.	ETV6-1674	NM_001987	exon3	c.G258A	p.T86T	CAACACGTTTGAA	.	265	8	264	1	G|0.850;A|0.150	4	4	0	0	0	A	11992168	G	A	11992168	2	1	37	1	0	0	0	0	0	0	0	1	5296	1132	40	1		1	ETV6	12	11992168	Silent	SNP	G	TCGA-OR-A5KV-01A-11D-A29I-10		11992168	121859727	53	8490										
AMDHD1	144193	hgsc.bcm.edu	37	chr12	96337225	96337225	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0202020202020202	2	1	0.680537862703468	1.276008492569	0.46400308820691	1	1	0	agaacgcgcagcaagtggtgCtggtgtgcgcccgcggcgag	18	11	0	1	rs1436121	byfrequency	TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	.	AMDHD1-90	NM_152435	exon1	c.C49T	p.L17L	GTGGTGCTGGTGT	.	13	6	0	0	C|0.752;T|0.248	1	1	0	0	0	T	96337225	C	T	96337225	2	4	37	1	0	0	0	0	0	0	0	1	567	796	28	3		3	AMDHD1	12	96337225	Silent	SNP	C	TCGA-OR-A5KV-01A-11D-A29I-10	84345057	96337225	37514670	54	8491										
RNFT2	84900	hgsc.bcm.edu	37	chr12	117187907	117187907	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0202020202020202	2	1	0.680537862703468	1.276008492569	0.46400308820691	1	1	0	caccgccagccccaccaccaTttccaccatggcggccaccg	7	22	0	0	rs111256849	byfrequency	TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	.	.	NM_001109903	exon4	c.T345C	p.H115H	CCACCATTTCCAC	.	9	4	0	0	T|0.767;C|0.233	0	0	0	0	0	C	117187907	T	C	117187907	2	2	37	1	0	0	0	0	0	0	0	1	13537	1490	52	4		4	RNFT2	12	117187907	Silent	SNP	T	TCGA-OR-A5KV-01A-11D-A29I-10	20850682	117187907	16663988	55	8492										
KSR2	283455	bcgsc.ca	37	chr12	117993064	117993064	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0202020202020202	2	1	0.680537862703468	1.276008492569	0.46400308820691	1	1	0	agagggttgttgatgtcacaCggaacggactctgtccggac	14	9	2	2	rs7955803	byfrequency	TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	.	KSR2-1449	NM_173598	exon9	c.G1341A	p.P447P	GTCACACGGAACG	.	278	10	266	3	C|0.758;T|0.242	0	0	0	0	0	T	117993064	C	T	117993064	2	4	37	1	0	0	0	0	0	0	0	1	8604	523	19	1		1	KSR2	12	117993064	Silent	SNP	C	TCGA-OR-A5KV-01A-11D-A29I-10	805157	117993064	15858831	56	8493										
RIMBP2	23504	hgsc.bcm.edu	37	chr12	130921471	130921471	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0202020202020202	2	1	0.680537862703468	1.276008492569	0.46400308820691	1	1	0	accggggtgccctgtggctgTggcaggatgcggctgggtga	20	9	0	1	rs2292663	byfrequency	TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	.	RIMBP2-142	NM_015347	exon10	c.A1971G	p.P657P	TGGCTGTGGCAGG	.	34	32	0	0	T|0.868;C|0.132	3	0	3	0	0	C	130921471	T	C	130921471	2	2	37	1	0	0	0	0	0	0	0	1	13398	1683	59	4		4	RIMBP2	12	130921471	Silent	SNP	T	TCGA-OR-A5KV-01A-11D-A29I-10	12928407	130921471	2930424	57	8494										
EFHA1	221154	hgsc.bcm.edu	37	chr13	22178258	22178258	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0202020202020202	2	1	0.680537862703468	1.276008492569	0.46400308820691	1	1	0	tttccgccccaggccgccacCcgcgcgcagctacccgcagc	10	22	0	0	rs9509812	byfrequency	TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	.	EFHA1-90	NM_152726	exon1	c.G30A	p.R10R	CGCCACCCGCGCG	.	15	15	0	0	C|0.873;T|0.127	11	0	11	0	0	T	22178258	C	T	22178258	2	4	37	1	0	0	0	0	0	0	0	1	4954	610	22	3		3	EFHA1	13	22178258	Silent	SNP	C	TCGA-OR-A5KV-01A-11D-A29I-10		22178258	92991620	58	8495										
LRRC16B	90668	broad.mit.edu	37	chr14	24527267	24527267	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0202020202020202	2	1	0.680537862703468	1.276008492569	0.46400308820691	1	1	0	cacaaagctgcccctggaggCcctcaggtcgggtgggtgca	15	13	1	0	novel		TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	.	LRRC16B-139	NM_138360	exon16	c.C1316A	p.A439D	TGGAGGCCCTCAG	.	129	5	98	1	.	0	0	0	0	0	A	24527267	C	A	24527267	3	1	37	1	0	0	0	0	1	0	0	0	8999	739	26	3	1378	3	LRRC16B	14	24527267	Missense_Mutation	SNP	C	TCGA-OR-A5KV-01A-11D-A29I-10		24527267	82822273	59	8496										
HHIPL1	84439	hgsc.bcm.edu	37	chr14	100141689	100141689	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0202020202020202	2	1	0.680537862703468	1.276008492569	0.46400308820691	1	1	0	cgggcgcgtggaggtgttcgTgggcggacgctggggcaccg	22	10	0	0	rs7158073	byfrequency	TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	.	HHIPL1-70	NM_001127258	exon9	c.T2075C	p.V692A	TGTTCGTGGGCGG	.	7	7	0	0	T|0.478;C|0.522	2	0	2	0	0	C	100141689	T	C	100141689	3	2	37	1	0	0	0	0	1	0	0	0	7114	1696	59	4	2210	4	HHIPL1	14	100141689	Missense_Mutation	SNP	T	TCGA-OR-A5KV-01A-11D-A29I-10	75614422	100141689	7207851	60	8497										
WDR72	256764	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr15	53998158	53998158	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0202020202020202	2	1	0.680537862703468	1.276008492569	0.46400308820691	1	1	0	tcaaacttggatacaggaacAtcagggatgtgccacaaagt	10	8	2	0	novel		TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	.	WDR72-92	NM_182758	exon10	c.T1068A	p.D356E	AGGAACATCAGGG	.	71	31	66	0	.	0	0	0	0	0	T	53998158	A	T	53998158	3	4	37	1	0	0	0	0	1	0	0	0	17360	214	8	5	2284	5	WDR72	15	53998158	Missense_Mutation	SNP	A	TCGA-OR-A5KV-01A-11D-A29I-10		53998158	48533234	61	8498										
KBTBD13	390594	hgsc.bcm.edu	37	chr15	65369395	65369395	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0202020202020202	2	1	0.680537862703468	1.276008492569	0.46400308820691	1	1	0	ggaggacgagctgctgcaggCcgtggagtgcgccgccttcc	17	13	0	0	rs2919358	byfrequency	TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	.	.	NM_001101362	exon1	c.C242T	p.A81V	TGCAGGCCGTGGA	.	8	4	0	0	C|0.452;T|0.548	0	0	0	0	0	T	65369395	C	T	65369395	3	4	37	1	0	0	0	0	1	0	0	0	8013	739	26	3	244	3	KBTBD13	15	65369395	Missense_Mutation	SNP	C	TCGA-OR-A5KV-01A-11D-A29I-10	11371237	65369395	37161997	62	8499										
PARP6	56965	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr15	72543246	72543246	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0202020202020202	2	1	0.680537862703468	1.276008492569	0.46400308820691	1	1	0	ggaaccgagcctccttggcaGgagggctgctcagcaggagg	17	11	1	0	novel		TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	.	PARP6-522	NM_020214	exon17	c.C1358T	p.P453L	TTGGCAGGAGGGC	.	172	78	175	0	.	20	9	11	0	0	A	72543246	G	A	72543246	3	1	37	1	0	0	0	0	1	0	0	0	11493	1000	35	3	562	3	PARP6	15	72543246	Missense_Mutation	SNP	G	TCGA-OR-A5KV-01A-11D-A29I-10	7173851	72543246	29988146	63	8500										
UBL7	84993	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr15	74740854	74740854	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0202020202020202	2	1	0.680537862703468	1.276008492569	0.46400308820691	1	1	0	cccagaggcctgaagggcatGctgtagggcttggctgaaga	16	9	0	4	novel		TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	.	UBL7-91	NM_201265	exon10	c.C970T	p.H324Y	GGGCATGCTGTAG	.	225	101	225	0	.	89	44	45	0	0	A	74740854	G	A	74740854	3	1	37	1	0	0	0	0	1	0	0	0	16928	1319	46	3	180	3	UBL7	15	74740854	Missense_Mutation	SNP	G	TCGA-OR-A5KV-01A-11D-A29I-10	2197608	74740854	27790538	64	8501										
EME2	197342	hgsc.bcm.edu	37	chr16	1823444	1823444	+	Silent	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.0202020202020202	2	1	0.680537862703468	1.276008492569	0.46400308820691	1	1	0	ctgctgcggccggagcaggtCctgaagcgcctcgcggtgtg	17	13	0	1	rs761065		TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	.	EME2-229	NM_001257370	exon1	c.C216G	p.V72V	GCAGGTCCTGAAG	.	4	4	0	0	C|0.615;G|0.385	0	0	0	0	0	G	1823444	C	G	1823444	2	3	37	1	0	0	0	0	0	0	0	1	5102	842	30	3		3	EME2	16	1823444	Silent	SNP	C	TCGA-OR-A5KV-01A-11D-A29I-10		1823444	88531309	65	8502										
ALG1	56052	bcgsc.ca	37	chr16	5132636	5132636	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0202020202020202	2	1	0.680537862703468	1.276008492569	0.46400308820691	1	1	0	atgaaggtggtggacatgttCgggtgctgtttgcctgtgtg	17	5	0	1	rs1047732	byfrequency	TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	.	ALG1-92	NM_019109	exon11	c.C1149T	p.F383F	CATGTTCGGGTGC	.	48	5	63	0	C|0.537;T|0.463	30	30	0	0	0	T	5132636	C	T	5132636	2	4	37	1	0	0	0	0	0	0	0	1	510	883	31	1		1	ALG1	16	5132636	Silent	SNP	C	TCGA-OR-A5KV-01A-11D-A29I-10	3309192	5132636	85222117	66	8503										
NECAB2	54550	bcgsc.ca	37	chr16	84035446	84035446	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0202020202020202	2	1	0.680537862703468	1.276008492569	0.46400308820691	1	1	0	acaggcacctgcagagccccCtgtgtaaggcgttccggcac	12	15	0	1	rs2271298	byfrequency	TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	.	NECAB2-70	NM_019065	exon12	c.C1057G	p.L353V	AGCCCCCTGTGTA	.	221	7	250	2	C|0.697;G|0.303	69	69	0	0	0	G	84035446	C	G	84035446	3	3	37	1	0	0	0	0	1	0	0	0	10334	680	24	3	1103	3	NECAB2	16	84035446	Missense_Mutation	SNP	C	TCGA-OR-A5KV-01A-11D-A29I-10	78902810	84035446	6319307	67	8504										
ZFPM1	161882	hgsc.bcm.edu	37	chr16	88599659	88599659	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0202020202020202	2	1	0.680537862703468	1.276008492569	0.46400308820691	1	1	0	tcgccaggactggacagaaaGgccctggccgaggccaccaa	13	14	0	1	rs71395304	byfrequency	TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	.	ZFPM1-90	NM_153813	exon10	c.G1293T	p.K431N	CAGAAAGGCCCTG	.	25	20	1	0	G|0.858;T|0.142	35	20	15	0	0	T	88599659	G	T	88599659	3	4	37	1	0	0	0	0	1	0	0	0	17694	991	35	3	1331	3	ZFPM1	16	88599659	Missense_Mutation	SNP	G	TCGA-OR-A5KV-01A-11D-A29I-10	4564213	88599659	1755094	68	8505										
KIAA0753	9851	broad.mit.edu	37	chr17	6493296	6493296	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0202020202020202	2	1	0.680537862703468	1.276008492569	0.46400308820691	1	1	0	tctcttttctctgatccttcCtctgttcccacactttcatc	2	16	4	1	novel		TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	.	KIAA0753-90	NM_014804	exon18	c.G2589T	p.E863D	TCCTTCCTCTGTT	.	70	4	56	0	.	5	5	0	0	0	A	6493296	C	A	6493296	3	1	37	1	0	0	0	0	1	0	0	0	8212	680	24	3	322	3	KIAA0753	17	6493296	Missense_Mutation	SNP	C	TCGA-OR-A5KV-01A-11D-A29I-10		6493296	74701914	69	8506										
SLC2A4	6517	broad.mit.edu	37	chr17	7187306	7187306	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0202020202020202	2	1	0.680537862703468	1.276008492569	0.46400308820691	1	1	0	cgcccagggctgacatcaggGctggtgcccatgtacgtggg	16	12	1	1	novel		TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	.	SLC2A4-90	NM_001042	exon5	c.G462T	p.G154G	ATCAGGGCTGGTG	.	77	4	76	0	.	60	60	0	0	0	T	7187306	G	T	7187306	2	4	37	1	0	0	0	0	0	0	0	1	14581	1190	42	3		3	SLC2A4	17	7187306	Silent	SNP	G	TCGA-OR-A5KV-01A-11D-A29I-10	694010	7187306	74007904	70	8507										
NDEL1	81565	ucsc.edu	37	chr17	8354151	8354151	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0202020202020202	2	1	0.680537862703468	1.276008492569	0.46400308820691	1	1	0	aacaggaagtaactagaaagTcggctcctagctctccaact	8	11	1	1	novel		TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	.	NDEL1-90	NM_001025579	exon6	c.T580C	p.S194P	AGAAAGTCGGCTC	.	113	2	119	1	.	29	28	1	0	0	C	8354151	T	C	8354151	3	2	37	1	0	0	0	0	1	0	0	0	10273	1667	58	4	598	4	NDEL1	17	8354151	Missense_Mutation	SNP	T	TCGA-OR-A5KV-01A-11D-A29I-10	1166845	8354151	72841059	71	8508										
PSMD3	5709	broad.mit.edu	37	chr17	38144959	38144959	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0202020202020202	2	1	0.680537862703468	1.276008492569	0.46400308820691	1	1	0	cagaagatctctgatgatctGatgcagaagatcagtactca	9	8	4	7	novel		TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	.	PSMD3-92	NM_002809	exon4	c.G573T	p.L191L	TGATCTGATGCAG	.	70	3	79	0	.	117	117	0	0	0	T	38144959	G	T	38144959	2	4	37	1	0	0	0	0	0	0	0	1	12731	1277	45	3		3	PSMD3	17	38144959	Silent	SNP	G	TCGA-OR-A5KV-01A-11D-A29I-10	29790808	38144959	43050251	72	8509										
LLGL2	3993	broad.mit.edu	37	chr17	73565071	73565071	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0202020202020202	2	1	0.680537862703468	1.276008492569	0.46400308820691	1	1	0	gcccacaggcacgaggacggCacggtgcggttctgggatgc	17	12	1	0	novel		TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	.	LLGL2-251	NM_004524	exon13	c.C1335A	p.G445G	GGACGGCACGGTG	.	95	8	52	2	.	2	2	0	0	0	A	73565071	C	A	73565071	2	1	37	1	0	0	0	0	0	0	0	1	8858	697	25	3		3	LLGL2	17	73565071	Silent	SNP	C	TCGA-OR-A5KV-01A-11D-A29I-10	35420112	73565071	7630139	73	8510										
SMCHD1	23347	bcgsc.ca	37	chr18	2688477	2688477	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0202020202020202	2	1	0.680537862703468	1.276008492569	0.46400308820691	1	1	0	ttggtgttgggggcaagcaaGctgtcttctttgttggacaa	14	6	2	0	novel		TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	.	SMCHD1-46	NM_015295	exon6	c.G724T	p.A242S	AAGCAAGCTGTCT	.	54	4	78	0	.	1	1	0	0	0	T	2688477	G	T	2688477	3	4	37	1	0	0	0	0	1	0	0	0	14823	971	34	3	746	3	SMCHD1	18	2688477	Missense_Mutation	SNP	G	TCGA-OR-A5KV-01A-11D-A29I-10		2688477	75388771	74	8511										
RAX	30062	hgsc.bcm.edu	37	chr18	56940307	56940307	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0202020202020202	2	1	0.680537862703468	1.276008492569	0.46400308820691	1	1	0	aaggtgccgaggatcccgtcGtccttggtaaaccccaggat	12	12	0	0	rs2271733	byfrequency	TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	.	RAX-90	NM_013435	exon1	c.C132A	p.D44E	CCCGTCGTCCTTG	.	7	4	4	0	G|0.801;T|0.199	0	0	0	0	0	T	56940307	G	T	56940307	3	4	37	1	0	0	0	0	1	0	0	0	13131	1136	40	2	920	2	RAX	18	56940307	Missense_Mutation	SNP	G	TCGA-OR-A5KV-01A-11D-A29I-10	54251830	56940307	21136941	75	8512										
CBLN2	147381	hgsc.bcm.edu	37	chr18	70209321	70209321	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0202020202020202	2	1	0.680537862703468	1.276008492569	0.46400308820691	1	1	0	aggcaggatccgcagccgccCggctcgcgcagcgccccccg	14	20	0	0	rs7237888		TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	.	CBLN2-90	NM_182511	exon3	c.G75T	p.P25P	GCCGCCCGGCTCG	.	6	6	0	0	C|0.390;A|0.610	0	0	0	0	0	A	70209321	C	A	70209321	2	1	37	1	0	0	0	0	0	0	0	1	2711	639	23	2		2	CBLN2	18	70209321	Silent	SNP	C	TCGA-OR-A5KV-01A-11D-A29I-10	13269014	70209321	7867927	76	8513										
ABCA7	10347	hgsc.bcm.edu	37	chr19	1065044	1065044	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0202020202020202	2	1	0.680537862703468	1.276008492569	0.46400308820691	1	1	0	ctgcgcgaggcacatggaggCcgcctgcgcttccagctgcc	14	16	0	0	rs4147935	byfrequency	TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	.	ABCA7-98	NM_019112	exon46	c.C6159T	p.G2053G	TGGAGGCCGCCTG	.	11	8	0	0	C|0.766;T|0.234	36	19	17	0	0	T	1065044	C	T	1065044	2	4	37	1	0	0	0	0	0	0	0	1	37	726	26	3		3	ABCA7	19	1065044	Silent	SNP	C	TCGA-OR-A5KV-01A-11D-A29I-10		1065044	58063939	77	8514										
PCSK4	54760	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	1488279	1488279	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0202020202020202	2	1	0.680537862703468	1.276008492569	0.46400308820691	1	1	0	ctgctgctggaaccactgcaCctgcagagcagagggtgcat	13	12	0	2	novel		TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	.	PCSK4-90	NM_017573	exon3	c.G295T	p.V99L	ACTGCACCTGCAG	.	139	49	110	0	.	0	0	0	0	0	A	1488279	C	A	1488279	3	1	37	1	0	0	0	0	1	0	0	0	11631	521	18	3	2024	3	PCSK4	19	1488279	Missense_Mutation	SNP	C	TCGA-OR-A5KV-01A-11D-A29I-10	423235	1488279	57640704	78	8515										
JSRP1	126306	hgsc.bcm.edu	37	chr19	2253732	2253732	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0202020202020202	2	1	0.680537862703468	1.276008492569	0.46400308820691	1	1	0	cgctcagggccgggggcggcGgcggcggctgcaggggcggc	24	13	1	0	rs74521370		TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	.	JSRP1-91	NM_144616	exon5	c.C323T	p.P108L	GGCGGCGGCGGCG	.	8	4	0	0	G|0.994;A|0.006	0	0	0	0	0	A	2253732	G	A	2253732	3	1	37	1	0	0	0	0	1	0	0	0	7987	1116	39	1	684	1	JSRP1	19	2253732	Missense_Mutation	SNP	G	TCGA-OR-A5KV-01A-11D-A29I-10	765453	2253732	56875251	79	8516										
C19orf10	56005	hgsc.bcm.edu	37	chr19	4670313	4670313	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0202020202020202	2	1	0.680537862703468	1.276008492569	0.46400308820691	1	1	0	cgcggcccacaagctcgcgcCgacgccgttccaccctccgc	10	22	0	0	rs2270090	byfrequency	TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	.	C19orf10-90	NM_019107	exon1	c.G34C	p.G12R	TCGCGCCGACGCC	.	8	5	0	0	C|0.752;G|0.248	8	2	6	0	0	G	4670313	C	G	4670313	3	3	37	1	0	0	0	0	1	0	0	0	1914	652	23	2	511	2	C19orf10	19	4670313	Missense_Mutation	SNP	C	TCGA-OR-A5KV-01A-11D-A29I-10	2416581	4670313	54458670	80	8517										
KANK3	256949	hgsc.bcm.edu	37	chr19	8400651	8400651	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0202020202020202	2	1	0.680537862703468	1.276008492569	0.46400308820691	1	1	0	gcgcccccggcggcggggacCgggcacaggcgggggccgcc	21	17	0	0	rs11669559	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	.	KANK3-90	NM_198471	exon3	c.G60C	p.P20P	GGGGACCGGGCAC	.	9	6	0	0	C|0.880;G|0.120	1	1	0	0	0	G	8400651	C	G	8400651	2	3	37	1	0	0	0	0	0	0	0	1	7999	639	23	2		2	KANK3	19	8400651	Silent	SNP	C	TCGA-OR-A5KV-01A-11D-A29I-10	3730338	8400651	50728332	81	8518										
ACP5	54	broad.mit.edu	37	chr19	11687251	11687251	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0202020202020202	2	1	0.680537862703468	1.276008492569	0.46400308820691	1	1	0	gccaggacagctgtgtgcggGccagcttcacgtctcggggc	16	13	2	0	novel		TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	.	ACP5-90	NM_001111034	exon5	c.C542A	p.A181D	GTGCGGGCCAGCT	.	89	3	98	0	.	4	4	0	0	0	T	11687251	G	T	11687251	3	4	37	1	0	0	0	0	1	0	0	0	164	1203	42	3	443	3	ACP5	19	11687251	Missense_Mutation	SNP	G	TCGA-OR-A5KV-01A-11D-A29I-10	3286600	11687251	47441732	82	8519										
FBXW9	84261	broad.mit.edu	37	chr19	12800811	12800813	+	In_Frame_Del	DEL	CCA	CCA	-													0.0202020202020202	2	1	0.680537862703468	1.276008492569	0.46400308820691	1	1	0	gacgctgttggctcggcggtCcaccaccaccagggtgtggt					novel		TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	.	FBXW9-227	NM_032301	exon6	c.995_997del	p.332_333del	GGCGGTCCACCAC	.	93	7	83	0	.	0	0	0	0	0	-	12800813	CCA	-	12800811	7	5	37	1	0	1	0	1	0	0	0	0	5790	855	30	0	399	0	FBXW9	19	12800811	In_Frame_Del	DEL	CCA	TCGA-OR-A5KV-01A-11D-A29I-10	1113560	12800811	46328172	83	8520										
TSHZ3	57616	broad.mit.edu	37	chr19	31770238	31770240	+	In_Frame_Del	DEL	CTG	CTG	-													0.0202020202020202	2	1	0.680537862703468	1.276008492569	0.46400308820691	1	1	0	cacagctgctgctgctgctaCtgctgctgctgctgctgccg					novel		TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	.	TSHZ3-232	NM_020856	exon2	c.459_461del	p.153_154del	CTGCTACTGCTGC	.	321	7	320	0	.	0	0	0	0	0	-	31770240	CTG	-	31770238	7	5	37	1	0	1	0	1	0	0	0	0	16663	565	20	0	2788	0	TSHZ3	19	31770238	In_Frame_Del	DEL	CTG	TCGA-OR-A5KV-01A-11D-A29I-10	18969427	31770238	27358745	84	8521										
RINL	126432	hgsc.bcm.edu	37	chr19	39360720	39360720	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0202020202020202	2	1	0.680537862703468	1.276008492569	0.46400308820691	1	1	0	ggctccgcaaggcgggggcgGggctctgcccttccggtccc	17	16	1	0	rs8110393		TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	.	RINL-91	NM_001195833	exon9	c.C1205T	p.P402L	GGGGCGGGGCTCT	.	16	16	0	0	G|0.349;A|0.651	0	0	0	0	0	A	39360720	G	A	39360720	3	1	37	1	0	0	0	0	1	0	0	0	13410	1232	43	3	511	3	RINL	19	39360720	Missense_Mutation	SNP	G	TCGA-OR-A5KV-01A-11D-A29I-10	7590482	39360720	19768263	85	8522										
DMWD	1762	broad.mit.edu	37	chr19	46289402	46289402	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0202020202020202	2	1	0.680537862703468	1.276008492569	0.46400308820691	1	1	0	gggccaggggggggtgcgggTagagcacgtcttcagtgagg	22	7	2	2	novel		TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	.	DMWD-90	NM_004943	exon3	c.A1352C	p.Y451S	TGCGGGTAGAGCA	.	205	54	61	12	.	0	0	0	0	0	G	46289402	T	G	46289402	3	3	37	1	0	0	0	0	1	0	0	0	4604	1638	57	5	684	5	DMWD	19	46289402	Missense_Mutation	SNP	T	TCGA-OR-A5KV-01A-11D-A29I-10	6928682	46289402	12839581	86	8523										
GLTSCR2	29997	hgsc.bcm.edu	37	chr19	48258717	48258717	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0202020202020202	2	1	0.680537862703468	1.276008492569	0.46400308820691	1	1	0	ggcggagctggcgcggcggcAgaggcggcggcaggcgcggc	24	12	0	1	rs1804994	byfrequency	TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	.	GLTSCR2-514	NM_015710	exon9	c.A1166G	p.Q389R	GGCGGCAGAGGCG	.	4	4	0	0	A|0.308;G|0.692	25	0	25	0	0	G	48258717	A	G	48258717	3	3	37	1	0	0	0	0	1	0	0	0	6495	188	7	4	1200	4	GLTSCR2	19	48258717	Missense_Mutation	SNP	A	TCGA-OR-A5KV-01A-11D-A29I-10	1969315	48258717	10870266	87	8524										
TPRX1	284355	bcgsc.ca	37	chr19	48305555	48305555	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0202020202020202	2	1	0.680537862703468	1.276008492569	0.46400308820691	1	1	0	ctgagattgggcctgggatcGggcctgggttcgggcctgag	19	9	0	2	rs147380237		TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	.	TPRX1-90	NM_198479	exon2	c.C713T	p.P238L	GGGATCGGGCCTG	.	41	6	38	0	G|0.989;A|0.011	0	0	0	0	0	A	48305555	G	A	48305555	3	1	37	1	0	0	0	0	1	0	0	0	16460	1116	39	1	526	1	TPRX1	19	48305555	Missense_Mutation	SNP	G	TCGA-OR-A5KV-01A-11D-A29I-10	46838	48305555	10823428	88	8525										
KCNA7	3743	hgsc.bcm.edu	37	chr19	49575618	49575618	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0202020202020202	2	1	0.680537862703468	1.276008492569	0.46400308820691	1	1	0	gccggccgccgcagccgcccAccggactggtagtagtagag	15	15	0	1	rs71352730	byfrequency	TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	.	KCNA7-90	NM_031886	exon1	c.T225C	p.G75G	CCGCCCACCGGAC	.	21	11	2	0	A|0.868;G|0.132	0	0	0	0	0	G	49575618	A	G	49575618	2	3	37	1	0	0	0	0	0	0	0	1	8029	146	6	4		4	KCNA7	19	49575618	Silent	SNP	A	TCGA-OR-A5KV-01A-11D-A29I-10	1270063	49575618	9553365	89	8526										
LRRC4B	94030	hgsc.bcm.edu	37	chr19	51021057	51021057	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0202020202020202	2	1	0.680537862703468	1.276008492569	0.46400308820691	1	1	0	ccacaccacccccactggccAcggcggccgcggcggccacg	12	22	0	0	rs61751957		TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	.	LRRC4B-205	NM_001080457	exon3	c.T1913C	p.V638A	CTGGCCACGGCGG	.	20	7	2	0	A|0.777;G|0.223	10	7	3	0	0	G	51021057	A	G	51021057	3	3	37	1	0	0	0	0	1	0	0	0	9034	159	6	4	232	4	LRRC4B	19	51021057	Missense_Mutation	SNP	A	TCGA-OR-A5KV-01A-11D-A29I-10	1445439	51021057	8107926	90	8527										
PPP1R12C	54776	hgsc.bcm.edu	37	chr19	55628609	55628609	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0202020202020202	2	1	0.680537862703468	1.276008492569	0.46400308820691	1	1	0	acctggtgcagggcgctgatAccgtcggcgttggtggagtc	17	10	0	1	rs66707428		TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	.	PPP1R12C-227	NM_017607	exon1	c.T303C	p.G101G	GCTGATACCGTCG	.	7	5	0	0	A|0.808;G|0.192	3	1	2	0	0	G	55628609	A	G	55628609	2	3	37	1	0	0	0	0	0	0	0	1	12388	378	14	4		4	PPP1R12C	19	55628609	Silent	SNP	A	TCGA-OR-A5KV-01A-11D-A29I-10	4607552	55628609	3500374	91	8528										
GNAS	2778	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr20	57484420	57484420	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0202020202020202	2	1	0.680537862703468	1.276008492569	0.46400308820691	1	1	0	ttcaggacctgcttcgctgcCgtgtcctgacttctggaatc	10	13	2	1	rs11554273	bycluster	TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	.	GNAS-4767	NM_080425	exon8	c.C2530T	p.R844C	CGCTGCCGTGTCC	.	133	64	143	0	C|1.000	2456	1242	1213	0	1	T	57484420	C	T	57484420	3	4	37	1	0	0	0	0	1	0	0	0	6530	652	23	1	3448	1	GNAS	20	57484420	Missense_Mutation	SNP	C	TCGA-OR-A5KV-01A-11D-A29I-10		57484420	5541100	92	8529										
KRTAP10-2	386679	hgsc.bcm.edu	37	chr21	45970771	45970772	+	Missense_Mutation	DNP	CA	CA	TG													0.0202020202020202	2	1	0.680537862703468	1.276008492569	0.46400308820691	1	1	0	gcagatggacttgcagcagaCaggcttgcagcagacggaca					novel		TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	CA	CA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	.	KRTAP10-2-135	NM_198693	exon1	c.T570C	p.V191I	GCAGACAGGCTTG	.	216	0	217	0	A|0.908;G|0.092	0	0	0	0	0	TG	45970772	CA	TG	45970771	3	4	37	1	0	0	0	0	1	0	0	0	8530	478	17	3	200	3	KRTAP10-2	21	45970771	Missense_Mutation	DNP	CA	TCGA-OR-A5KV-01A-11D-A29I-10		45970771	2159124	93	8530	92	2								
KRTAP10-2	386679	hgsc.bcm.edu;ucsc.edu	37	chr21	45970774	45970774	+	Missense_Mutation	SNP	G	G	A													0.0202020202020202	2	1	0.680537862703468	1.276008492569	0.46400308820691	1	1	0	gatggacttgcagcagacagGcttgcagcagacggacacac					rs76536096	byfrequency	TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	.	KRTAP10-2-135	NM_198693	exon1	c.C568T	p.P190S	AGACAGGCTTGCA	.	208	24	206	0	G|0.917;A|0.083	0	0	0	0	0	A	45970774	G	A	45970774	3	1	37	1	0	0	0	0	1	0	0	0	8530	1203	42	3	203	3	KRTAP10-2	21	45970774	Missense_Mutation	SNP	G	TCGA-OR-A5KV-01A-11D-A29I-10	3	45970774	2159121	94	8531	92	2								
PCNT	5116	hgsc.bcm.edu	37	chr21	47831845	47831845	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0202020202020202	2	1	0.680537862703468	1.276008492569	0.46400308820691	1	1	0	gctggacaggcggcaggcccGcagagccacagctcacacac	13	16	1	1	rs34268261	byfrequency	TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	.	PCNT-141	NM_006031	exon28	c.G5858A	p.R1953H	AGGCCCGCAGAGC	.	15	9	0	0	G|0.955;A|0.045	0	0	0	0	0	A	47831845	G	A	47831845	3	1	37	1	0	0	0	0	1	0	0	0	11619	1087	38	1	5968	1	PCNT	21	47831845	Missense_Mutation	SNP	G	TCGA-OR-A5KV-01A-11D-A29I-10	1861071	47831845	298050	95	8532										
LZTR1	8216	broad.mit.edu	37	chr22	21343966	21344002	+	In_Frame_Del	DEL	GAGGAGGTGAGGGGCGTGGGGAGCCAGGGCGCAGGTA	GAGGAGGTGAGGGGCGTGGGGAGCCAGGGCGCAGGTA	-													0.0202020202020202	2	1	0.680537862703468	1.276008492569	0.46400308820691	1	1	0	accgagagctcacctgctggGaggaggtgaggggcgtgggg					novel		TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	.	LZTR1-280	NM_006767	exon7	c.646_651del	p.216_217del	TGCTGGGAGGAGG	.	58	7	62	0	.	0	0	0	0	0	-	21344002	GAGGAGGTGAGGGGCGTGGGGAGCCAGGGCGCAGGTA	-	21343966	7	5	37	1	0	1	0	1	0	0	0	0	9165	1175	41	0	672	0	LZTR1	22	21343966	In_Frame_Del	DEL	GAGGAGGTGAGGGGCGTGGGGAGCCAGGGCGCAGGTA	TCGA-OR-A5KV-01A-11D-A29I-10		21343966	29960600	96	8533										
TRIOBP	11078	hgsc.bcm.edu	37	chr22	38122462	38122462	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0202020202020202	2	1	0.680537862703468	1.276008492569	0.46400308820691	1	1	0	cagcagcgggggccgcacccAcagccctggccgtgcagagg	16	16	0	1	rs739138	byfrequency	TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	.	TRIOBP-136	NM_001039141	exon7	c.A3899G	p.H1300R	GCACCCACAGCCC	.	19	13	1	0	A|0.354;G|0.646	0	0	0	0	0	G	38122462	A	G	38122462	3	3	37	1	0	0	0	0	1	0	0	0	16591	159	6	4	3917	4	TRIOBP	22	38122462	Missense_Mutation	SNP	A	TCGA-OR-A5KV-01A-11D-A29I-10	16778496	38122462	13182104	97	8534										
SSX3	10214	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	48214670	48214670	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0202020202020202	2	1	0.680537862703468	1.276008492569	0.46400308820691	1	1	0	gtgggtctccttgcaaaggtGtcatctccgttcatggcaca	11	11	4	0	novel		TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	.	SSX3-130	NM_021014	exon2	c.C15A	p.D5E	AAAGGTGTCATCT	.	3238	460	1372	4	.	0	0	0	0	0	T	48214670	G	T	48214670	3	4	37	1	0	0	0	0	1	0	0	0	15242	1368	48	3	626	3	SSX3	23	48214670	Missense_Mutation	SNP	G	TCGA-OR-A5KV-01A-11D-A29I-10		48214670	107055890	98	8535										
CACNA1F	778	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	49067892	49067892	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0202020202020202	2	1	0.680537862703468	1.276008492569	0.46400308820691	1	1	0	ctcaggatcacaccgatttcCgggaaggctggcaagcatta	11	11	2	0	novel		TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	.	CACNA1F-176	NM_005183	exon36	c.G4183A	p.G1395R	GATTTCCGGGAAG	.	1381	184	504	0	.	0	0	0	0	0	T	49067892	C	T	49067892	3	4	37	1	0	0	0	0	1	0	0	0	2549	661	23	1	1802	1	CACNA1F	23	49067892	Missense_Mutation	SNP	C	TCGA-OR-A5KV-01A-11D-A29I-10	853222	49067892	106202668	99	8536										
SHROOM4	57477	broad.mit.edu	37	chrX	50376327	50376327	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0202020202020202	2	1	0.680537862703468	1.276008492569	0.46400308820691	1	1	0	gtagcaatttggcatcatatTtctctttagcaaggcagggc	10	8	2	0	novel		TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	.	SHROOM4-131	NM_020717	exon4	c.A2746G	p.N916D	TCATATTTCTCTT	.	1209	21	431	1	.	1	1	0	0	0	C	50376327	T	C	50376327	3	2	37	1	0	0	0	0	1	0	0	0	14331	1841	64	4	1759	4	SHROOM4	23	50376327	Missense_Mutation	SNP	T	TCGA-OR-A5KV-01A-11D-A29I-10	1308435	50376327	104894233	100	8537										
GPR112	139378	broad.mit.edu	37	chrX	135427636	135427636	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0202020202020202	2	1	0.680537862703468	1.276008492569	0.46400308820691	1	1	0	taactcctgaaatcacacttGcatctacagtggctgaaact	6	11	2	2	novel		TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	.	GPR112-183	NM_153834	exon6	c.G1771T	p.A591S	ACACTTGCATCTA	.	80	3	176	0	.	0	0	0	0	0	T	135427636	G	T	135427636	3	4	37	1	0	0	0	0	1	0	0	0	6649	1319	46	3	1781	3	GPR112	23	135427636	Missense_Mutation	SNP	G	TCGA-OR-A5KV-01A-11D-A29I-10	85051309	135427636	19842924	101	8538										
C1orf127	148345	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	11008485	11008485	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0425531914893617	4	1	0.964685237990787	1.41688144329897	0.731293648154307	1	1	0	ggctcaggtgcagccacatcCccgcttgacaagcctctcag	10	16	2	1	novel		TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	67dfc56a-abc7-40c7-a901-6512ec38d5f5	804ec9eb-9f16-4ab9-b2dd-2abb72a53348	.	C1orf127-91	NM_001170754	exon12	c.G1707T	p.G569G	CACATCCCCGCTT	.	97	80	119	0	.	2	2	0	0	0	A	11008485	C	A	11008485	2	1	38	1	0	0	0	0	0	0	0	1	2000	610	22	3		3	C1orf127	1	11008485	Silent	SNP	C	TCGA-OR-A5KW-01A-11D-A29I-10		11008485	238242136	1	8539										
LOR	4014	hgsc.bcm.edu	37	chr1	153233701	153233701	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0425531914893617	4	1	0.964685237990787	1.41688144329897	0.731293648154307	1	1	0	gggagcgtcaagtactccggAggcggcggctcctccggcgg	18	13	1	0	rs1143390	bycluster;byfrequency;by1000genomes	TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	67dfc56a-abc7-40c7-a901-6512ec38d5f5	804ec9eb-9f16-4ab9-b2dd-2abb72a53348	.	LOR-90	NM_000427	exon2	c.A276C	p.G92G	CTCCGGAGGCGGC	.	4	4	0	0	A|0.594;C|0.406	0	0	0	0	0	C	153233701	A	C	153233701	2	2	38	1	0	0	0	0	0	0	0	1	8924	291	11	5		5	LOR	1	153233701	Silent	SNP	A	TCGA-OR-A5KW-01A-11D-A29I-10	142225216	153233701	96016920	2	8540										
LBR	3930	broad.mit.edu	37	chr1	225600346	225600346	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0425531914893617	4	1	0.964685237990787	1.41688144329897	0.731293648154307	1	1	0	gtcaggataaaagcatagaaTcctttaaaaaaaaaaaaaaa	5	4	1	1	novel		TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	67dfc56a-abc7-40c7-a901-6512ec38d5f5	804ec9eb-9f16-4ab9-b2dd-2abb72a53348	.	LBR-228	NM_194442	exon8	c.A894T	p.G298G	ATAGAATCCTTTA	.	90	15	77	10	.	0	0	0	0	0	A	225600346	T	A	225600346	2	1	38	1	0	0	0	0	0	0	0	1	8674	1449	50	5		5	LBR	1	225600346	Silent	SNP	T	TCGA-OR-A5KW-01A-11D-A29I-10	72366645	225600346	23650275	3	8541										
EGLN1	54583	hgsc.bcm.edu	37	chr1	231557164	231557164	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0425531914893617	4	1	0.964685237990787	1.41688144329897	0.731293648154307	1	1	0	gggtacaggttcgccttctcCtggaacagcgatgagcgggc	15	11	1	1	rs61750991		TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	67dfc56a-abc7-40c7-a901-6512ec38d5f5	804ec9eb-9f16-4ab9-b2dd-2abb72a53348	.	EGLN1-226	NM_022051	exon1	c.G471C	p.Q157H	CTTCTCCTGGAAC	.	26	24	2	0	C|0.988;G|0.012	2	0	2	0	0	G	231557164	C	G	231557164	3	3	38	1	0	0	0	0	1	0	0	0	4979	680	24	3	829	3	EGLN1	1	231557164	Missense_Mutation	SNP	C	TCGA-OR-A5KW-01A-11D-A29I-10	5956818	231557164	17693457	4	8542										
OR2M5	127059	ucsc.edu	37	chr1	248309020	248309020	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0425531914893617	4	1	0.964685237990787	1.41688144329897	0.731293648154307	1	1	0	tactaatcctctcatgcaatGacacatcaatatttgaaaag	4	9	2	2	rs139290187	byfrequency	TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	67dfc56a-abc7-40c7-a901-6512ec38d5f5	804ec9eb-9f16-4ab9-b2dd-2abb72a53348	.	OR2M5-71	NM_001004690	exon1	c.G571A	p.D191N	TGCAATGACACAT	.	59	6	276	1	G|0.999;A|0.001	0	0	0	0	0	A	248309020	G	A	248309020	3	1	38	1	0	0	0	0	1	0	0	0	11042	1290	45	3	573	3	OR2M5	1	248309020	Missense_Mutation	SNP	G	TCGA-OR-A5KW-01A-11D-A29I-10	16751856	248309020	941601	5	8543										
SNTG2	54221	bcgsc.ca	37	chr2	1271230	1271230	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0425531914893617	4	1	0.964685237990787	1.41688144329897	0.731293648154307	1	1	0	agaggccctattgcttcagcAtcgtggccggccatgggaag	14	11	1	1	rs13023962	byfrequency	TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	67dfc56a-abc7-40c7-a901-6512ec38d5f5	804ec9eb-9f16-4ab9-b2dd-2abb72a53348	.	SNTG2-136	NM_018968	exon14	c.A1171G	p.I391V	TTCAGCATCGTGG	.	225	7	182	0	A|0.705;G|0.295	0	0	0	0	0	G	1271230	A	G	1271230	3	3	38	1	0	0	0	0	1	0	0	0	14910	217	8	4	1225	4	SNTG2	2	1271230	Missense_Mutation	SNP	A	TCGA-OR-A5KW-01A-11D-A29I-10		1271230	241928143	6	8544										
TPO	7173	hgsc.bcm.edu	37	chr2	1481231	1481231	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0425531914893617	4	1	0.964685237990787	1.41688144329897	0.731293648154307	1	1	0	ggccggagacggccgcgccaGcgaggtcccctccctgacgg	16	17	0	2	rs2175977	byfrequency	TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	67dfc56a-abc7-40c7-a901-6512ec38d5f5	804ec9eb-9f16-4ab9-b2dd-2abb72a53348	.	TPO-332	NM_175719	exon8	c.G1193C	p.S398T	GCGCCAGCGAGGT	.	4	4	0	0	G|0.301;C|0.699	0	0	0	0	0	C	1481231	G	C	1481231	3	2	38	1	0	0	0	0	1	0	0	0	16448	971	34	3	1219	3	TPO	2	1481231	Missense_Mutation	SNP	G	TCGA-OR-A5KW-01A-11D-A29I-10	210001	1481231	241718142	7	8545										
CXCR4	7852	broad.mit.edu	37	chr2	136872768	136872768	+	Frame_Shift_Del	DEL	G	G	-													0.0425531914893617	4	1	0.964685237990787	1.41688144329897	0.731293648154307	1	1	0	ggcgaagaaagccaggatgaGgatgactgtggtcttgaggg					novel		TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	67dfc56a-abc7-40c7-a901-6512ec38d5f5	804ec9eb-9f16-4ab9-b2dd-2abb72a53348	.	CXCR4-1082	NM_001008540	exon1	c.742delC	p.L248fs	GGATGAGGATGAC	.	188	8	208	0	.	0	0	0	0	0	-	136872768	G	-	136872768	7	5	38	1	0	1	0	1	0	0	0	0	4099	1000	35	0	332	0	CXCR4	2	136872768	Frame_Shift_Del	DEL	G	TCGA-OR-A5KW-01A-11D-A29I-10	135391537	136872768	106326605	8	8546										
ITGB6	3694	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr2	160994644	160994644	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0425531914893617	4	1	0.964685237990787	1.41688144329897	0.731293648154307	1	1	0	ggtaccgttgttacagatggCtgtaaatgacaagttgagtc	12	6	0	3	novel		TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	67dfc56a-abc7-40c7-a901-6512ec38d5f5	804ec9eb-9f16-4ab9-b2dd-2abb72a53348	.	ITGB6-227	NM_000888	exon9	c.G1174A	p.A392T	AGATGGCTGTAAA	.	175	15	221	0	.	0	0	0	0	0	T	160994644	C	T	160994644	3	4	38	1	0	0	0	0	1	0	0	0	7920	797	28	3	1220	3	ITGB6	2	160994644	Missense_Mutation	SNP	C	TCGA-OR-A5KW-01A-11D-A29I-10	24121876	160994644	82204729	9	8547										
SCRN3	79634	bcgsc.ca	37	chr2	175263063	175263063	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0425531914893617	4	1	0.964685237990787	1.41688144329897	0.731293648154307	1	1	0	cattacctccagcaacagtcGataacaggattatttttgga	7	9	0	0	rs10497410	byfrequency	TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	67dfc56a-abc7-40c7-a901-6512ec38d5f5	804ec9eb-9f16-4ab9-b2dd-2abb72a53348	.	SCRN3-91	NM_024583	exon2	c.G52A	p.D18N	ACAGTCGATAACA	.	40	4	51	0	G|0.866;A|0.134	5	5	0	0	0	A	175263063	G	A	175263063	3	1	38	1	0	0	0	0	1	0	0	0	13975	1058	37	1	54	1	SCRN3	2	175263063	Missense_Mutation	SNP	G	TCGA-OR-A5KW-01A-11D-A29I-10	14268419	175263063	67936310	10	8548										
PDE11A	50940	bcgsc.ca	37	chr2	178762824	178762824	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0425531914893617	4	1	0.964685237990787	1.41688144329897	0.731293648154307	1	1	0	aggagtaaaacagaacagcgTtcacatttcagcagagtttg	10	7	2	2	rs71423514	byfrequency	TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	67dfc56a-abc7-40c7-a901-6512ec38d5f5	804ec9eb-9f16-4ab9-b2dd-2abb72a53348	.	PDE11A-93	NM_016953	exon4	c.A1263G	p.E421E	ACAGCGTTCACAT	.	76	5	77	0	T|0.895;C|0.105	0	0	0	0	0	C	178762824	T	C	178762824	2	2	38	1	0	0	0	0	0	0	0	1	11660	1722	60	4		4	PDE11A	2	178762824	Silent	SNP	T	TCGA-OR-A5KW-01A-11D-A29I-10	3499761	178762824	64436549	11	8549										
DOCK10	55619	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	225702542	225702542	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0425531914893617	4	1	0.964685237990787	1.41688144329897	0.731293648154307	1	1	0	cacttggccacaatgtcggtCagaaccctgcaaaagcaaag	9	12	1	1	novel		TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	67dfc56a-abc7-40c7-a901-6512ec38d5f5	804ec9eb-9f16-4ab9-b2dd-2abb72a53348	.	DOCK10-92	NM_014689	exon25	c.G2787C	p.L929L	GTCGGTCAGAACC	.	37	24	37	0	.	0	0	0	0	0	G	225702542	C	G	225702542	2	3	38	1	0	0	0	0	0	0	0	1	4696	813	29	3		3	DOCK10	2	225702542	Silent	SNP	C	TCGA-OR-A5KW-01A-11D-A29I-10	46939718	225702542	17496831	12	8550										
IL17RC	84818	hgsc.bcm.edu	37	chr3	9975245	9975256	+	In_Frame_Del	DEL	GGCGCGGGACCT	GGCGCGGGACCT	-													0.0425531914893617	4	1	0.964685237990787	1.41688144329897	0.731293648154307	1	1	0	cgggacgcggggtgggaccaGgcgcgggacctggggcgggg					novel		TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10	GGCGCGGGACCT	GGCGCGGGACCT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	67dfc56a-abc7-40c7-a901-6512ec38d5f5	804ec9eb-9f16-4ab9-b2dd-2abb72a53348	.	IL17RC-92	NM_153461	exon19	c.2344_2355del	p.782_785del	GGACCAGGCGCGG	.	16	15	3	0	.	0	0	0	0	0	-	9975256	GGCGCGGGACCT	-	9975245	7	5	38	1	0	1	0	1	0	0	0	0	7662	1000	35	0	2418	0	IL17RC	3	9975245	In_Frame_Del	DEL	GGCGCGGGACCT	TCGA-OR-A5KW-01A-11D-A29I-10		9975245	188047185	13	8551										
FANCD2	2177	ucsc.edu	37	chr3	10091153	10091153	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0425531914893617	4	1	0.964685237990787	1.41688144329897	0.731293648154307	1	1	0	ctagagttggtagtgttaaaCccatctgctatgatgatgaa	10	6	1	4	rs6785756	bycluster;byfrequency	TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	67dfc56a-abc7-40c7-a901-6512ec38d5f5	804ec9eb-9f16-4ab9-b2dd-2abb72a53348	.	FANCD2-229	NM_001018115	exon17	c.C1509T	p.N503N	GTTAAACCCATCT	.	69	54	133	28	C|0.429;T|0.571	1	0	1	0	0	T	10091153	C	T	10091153	2	4	38	1	0	0	0	0	0	0	0	1	5684	506	18	3		3	FANCD2	3	10091153	Silent	SNP	C	TCGA-OR-A5KW-01A-11D-A29I-10	115908	10091153	187931277	14	8552										
P4HTM	54681	broad.mit.edu;bcgsc.ca	37	chr3	49044142	49044142	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0425531914893617	4	1	0.964685237990787	1.41688144329897	0.731293648154307	1	1	0	tgggtgggtgacgtagacgaCtactcgctgcacgggggctg	18	9	0	2	novel		TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	67dfc56a-abc7-40c7-a901-6512ec38d5f5	804ec9eb-9f16-4ab9-b2dd-2abb72a53348	.	P4HTM-205	NM_177938	exon9	c.C1494G	p.D498E	AGACGACTACTCG	.	261	9	275	0	.	127	123	4	0	0	G	49044142	C	G	49044142	3	3	38	1	0	0	0	0	1	0	0	0	11389	564	20	3	1528	3	P4HTM	3	49044142	Missense_Mutation	SNP	C	TCGA-OR-A5KW-01A-11D-A29I-10	38952989	49044142	148978288	15	8553										
RBM6	10180	broad.mit.edu	37	chr3	50103899	50103899	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0425531914893617	4	1	0.964685237990787	1.41688144329897	0.731293648154307	1	1	0	cagtttcccaataaagaagtTctgatcaaacaccagcagct	6	11	2	2	novel		TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	67dfc56a-abc7-40c7-a901-6512ec38d5f5	804ec9eb-9f16-4ab9-b2dd-2abb72a53348	.	RBM6-280	NM_005777	exon17	c.T2907C	p.V969V	AGAAGTTCTGATC	.	56	4	61	0	.	37	33	4	0	0	C	50103899	T	C	50103899	2	2	38	1	0	0	0	0	0	0	0	1	13179	1770	62	4		4	RBM6	3	50103899	Silent	SNP	T	TCGA-OR-A5KW-01A-11D-A29I-10	1059757	50103899	147918531	16	8554										
ITIH1	3697	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	52819196	52819196	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0425531914893617	4	1	0.964685237990787	1.41688144329897	0.731293648154307	1	1	0	gattgtggtggccgggcgcaTtgctgacaacaaacagagca	14	9	0	2	novel		TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	67dfc56a-abc7-40c7-a901-6512ec38d5f5	804ec9eb-9f16-4ab9-b2dd-2abb72a53348	.	ITIH1-93	NM_002215	exon12	c.T1544C	p.I515T	GGCGCATTGCTGA	.	131	117	157	1	.	0	0	0	0	0	C	52819196	T	C	52819196	3	2	38	1	0	0	0	0	1	0	0	0	7924	1493	52	4	1590	4	ITIH1	3	52819196	Missense_Mutation	SNP	T	TCGA-OR-A5KW-01A-11D-A29I-10	2715297	52819196	145203234	17	8555										
NAALADL2	254827	bcgsc.ca	37	chr3	174951756	174951756	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0425531914893617	4	1	0.964685237990787	1.41688144329897	0.731293648154307	1	1	0	atataaaaatgaagatgacaTggaaatttcaaagaagatta	7	2	1	5	rs4371530	byfrequency	TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	67dfc56a-abc7-40c7-a901-6512ec38d5f5	804ec9eb-9f16-4ab9-b2dd-2abb72a53348	.	NAALADL2-47	NM_207015	exon3	c.T581C	p.M194T	ATGACATGGAAAT	.	72	6	78	0	T|0.343;C|0.657	0	0	0	0	0	C	174951756	T	C	174951756	3	2	38	1	0	0	0	0	1	0	0	0	10158	1464	51	4	591	4	NAALADL2	3	174951756	Missense_Mutation	SNP	T	TCGA-OR-A5KW-01A-11D-A29I-10	122132560	174951756	23070674	18	8556										
FXR1	8087	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	180685937	180685937	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0425531914893617	4	1	0.964685237990787	1.41688144329897	0.731293648154307	1	1	0	gagaagatgatcgagacagcCgacatcagcgtgacagcagg	14	9	1	5	novel		TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	67dfc56a-abc7-40c7-a901-6512ec38d5f5	804ec9eb-9f16-4ab9-b2dd-2abb72a53348	.	FXR1-153	NM_001013438	exon14	c.C1297T	p.R433X	GACAGCCGACATC	.	199	173	203	0	.	12	1	11	0	0	T	180685937	C	T	180685937	4	4	38	1	0	0	0	0	0	1	0	0	6134	644	23	1	1351	1	FXR1	3	180685937	Nonsense_Mutation	SNP	C	TCGA-OR-A5KW-01A-11D-A29I-10	5734181	180685937	17336493	19	8557										
TNIP2	79155	hgsc.bcm.edu	37	chr4	2757800	2757800	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0425531914893617	4	1	0.964685237990787	1.41688144329897	0.731293648154307	1	1	0	tcgcagctgctcccggaagcGcgcaacctgctccagcagcg	12	17	0	0	rs74548850	byfrequency	TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	67dfc56a-abc7-40c7-a901-6512ec38d5f5	804ec9eb-9f16-4ab9-b2dd-2abb72a53348	.	TNIP2-90	NM_024309	exon1	c.C217G	p.R73G	GGAAGCGCGCAAC	.	12	7	0	0	G|0.957;C|0.043	3	2	1	0	0	C	2757800	G	C	2757800	3	2	38	1	0	0	0	0	1	0	0	0	16352	1087	38	2	1096	2	TNIP2	4	2757800	Missense_Mutation	SNP	G	TCGA-OR-A5KW-01A-11D-A29I-10		2757800	188396476	20	8558										
CCDC96	257236	hgsc.bcm.edu	37	chr4	7044357	7044357	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0425531914893617	4	1	0.964685237990787	1.41688144329897	0.731293648154307	1	1	0	tgggcgggctcctcagccccAacctcggccggctcttcggg	14	17	2	0	rs871133		TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	67dfc56a-abc7-40c7-a901-6512ec38d5f5	804ec9eb-9f16-4ab9-b2dd-2abb72a53348	.	CCDC96-90	NM_153376	exon1	c.T309C	p.V103V	AGCCCCAACCTCG	.	9	9	0	0	A|0.036;G|0.964	2	0	2	0	0	G	7044357	A	G	7044357	2	3	38	1	0	0	0	0	0	0	0	1	2880	117	5	4		4	CCDC96	4	7044357	Silent	SNP	A	TCGA-OR-A5KW-01A-11D-A29I-10	4286557	7044357	184109919	21	8559										
GPR78	27201	hgsc.bcm.edu	37	chr4	8583231	8583231	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0425531914893617	4	1	0.964685237990787	1.41688144329897	0.731293648154307	1	1	0	cgcttcgcagccttcaccgcCacgctccatgccgtgggctt	10	18	1	0	rs61741008	byfrequency	TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	67dfc56a-abc7-40c7-a901-6512ec38d5f5	804ec9eb-9f16-4ab9-b2dd-2abb72a53348	.	GPR78-516	NM_080819	exon1	c.C522A	p.A174A	CACCGCCACGCTC	.	15	10	0	0	C|0.992;A|0.008	0	0	0	0	0	A	8583231	C	A	8583231	2	1	38	1	0	0	0	0	0	0	0	1	6730	581	21	3		3	GPR78	4	8583231	Silent	SNP	C	TCGA-OR-A5KW-01A-11D-A29I-10	1538874	8583231	182571045	22	8560										
ZAR1	326340	hgsc.bcm.edu	37	chr4	48492434	48492434	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0425531914893617	4	1	0.964685237990787	1.41688144329897	0.731293648154307	1	1	0	gcgggcggcagctggcagcaGcgcggcaggggctgccttcc	19	14	0	0	rs10008444		TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	67dfc56a-abc7-40c7-a901-6512ec38d5f5	804ec9eb-9f16-4ab9-b2dd-2abb72a53348	.	ZAR1-90	NM_175619	exon1	c.G126C	p.Q42H	GCAGCAGCGCGGC	.	18	18	0	0	G|0.025;C|0.975	0	0	0	0	0	C	48492434	G	C	48492434	3	2	38	1	0	0	0	0	1	0	0	0	17553	962	34	3	128	3	ZAR1	4	48492434	Missense_Mutation	SNP	G	TCGA-OR-A5KW-01A-11D-A29I-10	39909203	48492434	142661842	23	8561										
PROL1	58503	broad.mit.edu;bcgsc.ca	37	chr4	71275326	71275326	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0425531914893617	4	1	0.964685237990787	1.41688144329897	0.731293648154307	1	1	0	ctttccattggaatctattaGacaacctcgactctttccgg	6	12	2	1	novel		TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	67dfc56a-abc7-40c7-a901-6512ec38d5f5	804ec9eb-9f16-4ab9-b2dd-2abb72a53348	.	PROL1-135	NM_021225	exon3	c.G281T	p.R94I	CTATTAGACAACC	.	217	9	159	0	.	0	0	0	0	0	T	71275326	G	T	71275326	3	4	38	1	0	0	0	0	1	0	0	0	12586	942	33	3	287	3	PROL1	4	71275326	Missense_Mutation	SNP	G	TCGA-OR-A5KW-01A-11D-A29I-10	22782892	71275326	119878950	24	8562										
DSPP	1834	hgsc.bcm.edu	37	chr4	88537078	88537213	+	Frame_Shift_Del	DEL	TGACAGCAGCAATAGCAGTGACAGCAGCGATAGCAGCGACAGCAGCGACAGCAGCGATAGCAGTGACAGCAGCGATAGCAGTGACAGCAGTGACAGCAGCAATAGCAGTGACAGCAGTGACAGCAGCGACAGCAGT	TGACAGCAGCAATAGCAGTGACAGCAGCGATAGCAGCGACAGCAGCGACAGCAGCGATAGCAGTGACAGCAGCGATAGCAGTGACAGCAGTGACAGCAGCAATAGCAGTGACAGCAGTGACAGCAGCGACAGCAGT	-													0.0425531914893617	4	1	0.964685237990787	1.41688144329897	0.731293648154307	1	1	0	agtgaaagcagtgatagcagTgacagcagcaatagcagtga					novel		TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10	TGACAGCAGCAATAGCAGTGACAGCAGCGATAGCAGCGACAGCAGCGACAGCAGCGATAGCAGTGACAGCAGCGATAGCAGTGACAGCAGTGACAGCAGCAATAGCAGTGACAGCAGTGACAGCAGCGACAGCAGT	TGACAGCAGCAATAGCAGTGACAGCAGCGATAGCAGCGACAGCAGCGACAGCAGCGATAGCAGTGACAGCAGCGATAGCAGTGACAGCAGTGACAGCAGCAATAGCAGTGACAGCAGTGACAGCAGCGACAGCAGT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	67dfc56a-abc7-40c7-a901-6512ec38d5f5	804ec9eb-9f16-4ab9-b2dd-2abb72a53348	.	DSPP-90	NM_014208	exon5	c.3264_3399del	p.1088_1133del	TAGCAGTGACAGC	.	488	0	354	0	.	0	0	0	0	0	-	88537213	TGACAGCAGCAATAGCAGTGACAGCAGCGATAGCAGCGACAGCAGCGACAGCAGCGATAGCAGTGACAGCAGCGATAGCAGTGACAGCAGTGACAGCAGCAATAGCAGTGACAGCAGTGACAGCAGCGACAGCAGT	-	88537078	7	5	38	1	0	1	0	1	0	0	0	0	4793	1693	59	0	3278	0	DSPP	4	88537078	Frame_Shift_Del	DEL	TGACAGCAGCAATAGCAGTGACAGCAGCGATAGCAGCGACAGCAGCGACAGCAGCGATAGCAGTGACAGCAGCGATAGCAGTGACAGCAGTGACAGCAGCAATAGCAGTGACAGCAGTGACAGCAGCGACAGCAGT	TCGA-OR-A5KW-01A-11D-A29I-10	17261752	88537078	102617198	25	8563	93	2								
DSPP	1834	ucsc.edu	37	chr4	88537081	88537081	+	Silent	SNP	C	C	T													0.0425531914893617	4	1	0.964685237990787	1.41688144329897	0.731293648154307	1	1	0	gaaagcagtgatagcagtgaCagcagcaatagcagtgacag					novel		TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	67dfc56a-abc7-40c7-a901-6512ec38d5f5	804ec9eb-9f16-4ab9-b2dd-2abb72a53348	.	DSPP-90	NM_014208	exon5	c.C3267T	p.D1089D	CAGTGACAGCAGC	.	427	144	332	2	.	0	0	0	0	0	T	88537081	C	T	88537081	2	4	38	1	0	0	0	0	0	0	0	1	4793	477	17	3		3	DSPP	4	88537081	Silent	SNP	C	TCGA-OR-A5KW-01A-11D-A29I-10	3	88537081	102617195	26	8564	93	2								
MAML3	55534	broad.mit.edu	37	chr4	141074334	141074334	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0425531914893617	4	1	0.964685237990787	1.41688144329897	0.731293648154307	1	1	0	gccgccgcatccaccggctgCcgggtgattgctactcggag	14	15	0	1	novel		TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	67dfc56a-abc7-40c7-a901-6512ec38d5f5	804ec9eb-9f16-4ab9-b2dd-2abb72a53348	.	MAML3-455	NM_018717	exon1	c.G148A	p.A50T	CGGCTGCCGGGTG	.	46	4	31	0	.	0	0	0	0	0	T	141074334	C	T	141074334	3	4	38	1	0	0	0	0	1	0	0	0	9235	739	26	3	3280	3	MAML3	4	141074334	Missense_Mutation	SNP	C	TCGA-OR-A5KW-01A-11D-A29I-10	52537253	141074334	50079942	27	8565										
HEXB	3074	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	chr5	73981246	73981246	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0425531914893617	4	1	0.964685237990787	1.41688144329897	0.731293648154307	1	1	0	cgtctcggccaagccggggcCggcgctgtggcccctgccgc	16	18	1	0	novel		TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	67dfc56a-abc7-40c7-a901-6512ec38d5f5	804ec9eb-9f16-4ab9-b2dd-2abb72a53348	.	HEXB-91	NM_000521	exon1	c.C161T	p.P54L	CGGGGCCGGCGCT	.	42	19	11	0	.	32	24	8	0	0	T	73981246	C	T	73981246	3	4	38	1	0	0	0	0	1	0	0	0	7095	652	23	1	163	1	HEXB	5	73981246	Missense_Mutation	SNP	C	TCGA-OR-A5KW-01A-11D-A29I-10		73981246	106934014	28	8566										
DUSP1	1843	hgsc.bcm.edu	37	chr5	172197790	172197790	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0425531914893617	4	1	0.964685237990787	1.41688144329897	0.731293648154307	1	1	0	caggcccatggcgcccttggCccggcgccgcacgatggtgc	15	17	0	0	rs34013988	byfrequency	TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	67dfc56a-abc7-40c7-a901-6512ec38d5f5	804ec9eb-9f16-4ab9-b2dd-2abb72a53348	.	DUSP1-659	NM_004417	exon1	c.G166A	p.A56T	CCTTGGCCCGGCG	.	24	10	0	0	C|0.976;T|0.024	46	31	15	0	0	T	172197790	C	T	172197790	3	4	38	1	0	0	0	0	1	0	0	0	4820	739	26	3	953	3	DUSP1	5	172197790	Missense_Mutation	SNP	C	TCGA-OR-A5KW-01A-11D-A29I-10	98216544	172197790	8717470	29	8567										
RNF39	80352	hgsc.bcm.edu	37	chr6	30039364	30039364	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0425531914893617	4	1	0.964685237990787	1.41688144329897	0.731293648154307	1	1	0	ctgatcgaagcgcttggggcCgtcagggggcgcgggcgtcc	19	12	1	1	rs11753382		TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	67dfc56a-abc7-40c7-a901-6512ec38d5f5	804ec9eb-9f16-4ab9-b2dd-2abb72a53348	.	RNF39-226	NM_025236	exon4	c.G787T	p.G263C	TGGGGCCGTCAGG	.	4	4	0	0	C|0.862;A|0.138	0	0	0	0	0	A	30039364	C	A	30039364	3	1	38	1	0	0	0	0	1	0	0	0	13526	652	23	2	479	2	RNF39	6	30039364	Missense_Mutation	SNP	C	TCGA-OR-A5KW-01A-11D-A29I-10		30039364	141075703	30	8568										
HLA-B	3106	bcgsc.ca	37	chr6	31324643	31324643	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0425531914893617	4	1	0.964685237990787	1.41688144329897	0.731293648154307	1	1	0	ctgtcgaacctcacgaactgGgtgtcgtccacgtagcccac	10	15	1	0	rs1050517	byfrequency	TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	67dfc56a-abc7-40c7-a901-6512ec38d5f5	804ec9eb-9f16-4ab9-b2dd-2abb72a53348	.	HLA-B-90	NM_005514	exon2	c.C165G	p.T55T	GAACTGGGTGTCG	.	31	11	64	2	G|0.419;C|0.581	27	27	0	0	0	C	31324643	G	C	31324643	2	2	38	1	0	0	0	0	0	0	0	1	7217	1219	43	3		3	HLA-B	6	31324643	Silent	SNP	G	TCGA-OR-A5KW-01A-11D-A29I-10	1285279	31324643	139790424	31	8569										
MICA	100507436	bcgsc.ca	37	chr6	31378977	31378977	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0425531914893617	4	1	0.964685237990787	1.41688144329897	0.731293648154307	1	1	0	tggagactgaggaatggacaGtgccccagtcctccagagct	13	11	0	3	rs1051792	byfrequency	TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	67dfc56a-abc7-40c7-a901-6512ec38d5f5	804ec9eb-9f16-4ab9-b2dd-2abb72a53348	.	.	NM_001177519	exon3	c.G454A	p.V152M	TGGACAGTGCCCC	.	206	9	218	3	G|0.653;A|0.347	50	50	0	0	0	A	31378977	G	A	31378977	3	1	38	1	0	0	0	0	1	0	0	0	9596	1029	36	3	464	3	MICA	6	31378977	Missense_Mutation	SNP	G	TCGA-OR-A5KW-01A-11D-A29I-10	54334	31378977	139736090	32	8570										
HLA-DQB1	3119	bcgsc.ca	37	chr6	32628022	32628022	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0425531914893617	4	1	0.964685237990787	1.41688144329897	0.731293648154307	1	1	0	agtctcaggagtcagtgcagAagccctggagaagagagaag	15	7	2	4	rs1140347	byfrequency	TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	67dfc56a-abc7-40c7-a901-6512ec38d5f5	804ec9eb-9f16-4ab9-b2dd-2abb72a53348	.	HLA-DQB1-22	NM_001243961	exon6	c.T801C	p.L267L	GTGCAGAAGCCCT	.	19	6	142	2	A|0.440;G|0.560	1	1	0	0	0	G	32628022	A	G	32628022	2	3	38	1	0	0	0	0	0	0	0	1	7227	233	9	4		4	HLA-DQB1	6	32628022	Silent	SNP	A	TCGA-OR-A5KW-01A-11D-A29I-10	1249045	32628022	138487045	33	8571										
PNPLA1	285848	bcgsc.ca	37	chr6	36269725	36269725	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0425531914893617	4	1	0.964685237990787	1.41688144329897	0.731293648154307	1	1	0	agaactcgcccttggcaatgAgtgccctgaacgcagtcaac	10	13	1	3	rs34598813	byfrequency	TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	67dfc56a-abc7-40c7-a901-6512ec38d5f5	804ec9eb-9f16-4ab9-b2dd-2abb72a53348	.	PNPLA1-137	NM_001145717	exon6	c.A863G	p.E288G	GCAATGAGTGCCC	.	92	6	116	0	A|0.923;G|0.077	2	2	0	0	0	G	36269725	A	G	36269725	3	3	38	1	0	0	0	0	1	0	0	0	12193	304	11	4	912	4	PNPLA1	6	36269725	Missense_Mutation	SNP	A	TCGA-OR-A5KW-01A-11D-A29I-10	3641703	36269725	134845342	34	8572										
OSTM1	28962	broad.mit.edu	37	chr6	108395512	108395512	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0425531914893617	4	1	0.964685237990787	1.41688144329897	0.731293648154307	1	1	0	cctgttggaagagggggtagCaggtctgacagaggcgcacg	18	8	1	3	novel		TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	67dfc56a-abc7-40c7-a901-6512ec38d5f5	804ec9eb-9f16-4ab9-b2dd-2abb72a53348	.	OSTM1-68	NM_014028	exon1	c.G344T	p.C115F	GGGTAGCAGGTCT	.	101	9	59	1	.	10	10	0	0	0	A	108395512	C	A	108395512	3	1	38	1	0	0	0	0	1	0	0	0	11327	710	25	3	684	3	OSTM1	6	108395512	Missense_Mutation	SNP	C	TCGA-OR-A5KW-01A-11D-A29I-10	72125787	108395512	62719555	35	8573										
SMOC2	64094	hgsc.bcm.edu	37	chr6	168842113	168842113	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0425531914893617	4	1	0.964685237990787	1.41688144329897	0.731293648154307	1	1	0	ctgctcccgccggtgcccgcTcagaagttctcggcgctcac	11	18	3	1	rs73270928	byfrequency	TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	67dfc56a-abc7-40c7-a901-6512ec38d5f5	804ec9eb-9f16-4ab9-b2dd-2abb72a53348	.	SMOC2-91	NM_022138	exon1	c.T63G	p.A21A	GCCCGCTCAGAAG	.	13	9	4	0	T|0.654;G|0.346	0	0	0	0	0	G	168842113	T	G	168842113	2	3	38	1	0	0	0	0	0	0	0	1	14837	1538	54	5		5	SMOC2	6	168842113	Silent	SNP	T	TCGA-OR-A5KW-01A-11D-A29I-10	60446601	168842113	2272954	36	8574										
AVL9	23080	broad.mit.edu	37	chr7	32535342	32535343	+	Frame_Shift_Ins	INS	-	-	G													0.0425531914893617	4	1	0.964685237990787	1.41688144329897	0.731293648154307	1	1	0	tggagaaggccaggagaggcINSggggatggcgtcccccgggg					novel		TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	67dfc56a-abc7-40c7-a901-6512ec38d5f5	804ec9eb-9f16-4ab9-b2dd-2abb72a53348	.	AVL9-90	NM_015060	exon1	c.21_22insG	p.G7fs	GAGAGGCGGGGAT	.	192	7	17	0	.	0	0	0	0	0	G	32535343	-	G	32535342	7	5	38	1	0	1	1	0	0	0	0	0	1229	755	27	0	23	0	AVL9	7	32535342	Frame_Shift_Ins	INS	-	TCGA-OR-A5KW-01A-11D-A29I-10		32535342	126603321	37	8575										
POM121L12	285877	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr7	53103984	53103984	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0425531914893617	4	1	0.964685237990787	1.41688144329897	0.731293648154307	1	1	0	ctcagacagcaagggtggcaGgcggaacctgcagccccggc	15	14	1	1	novel		TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	67dfc56a-abc7-40c7-a901-6512ec38d5f5	804ec9eb-9f16-4ab9-b2dd-2abb72a53348	.	.	NM_182595	exon1	c.G620A	p.R207K	GTGGCAGGCGGAA	.	127	56	65	0	.	0	0	0	0	0	A	53103984	G	A	53103984	3	1	38	1	0	0	0	0	1	0	0	0	12270	1000	35	3	622	3	POM121L12	7	53103984	Missense_Mutation	SNP	G	TCGA-OR-A5KW-01A-11D-A29I-10	20568642	53103984	106034679	38	8576										
MLXIPL	51085	hgsc.bcm.edu;broad.mit.edu	37	chr7	73011760	73011760	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0425531914893617	4	1	0.964685237990787	1.41688144329897	0.731293648154307	1	1	0	gggtgggtgggaaggctgcaGgagcaggcagcggagacact	21	7	0	1	novel		TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	67dfc56a-abc7-40c7-a901-6512ec38d5f5	804ec9eb-9f16-4ab9-b2dd-2abb72a53348	.	MLXIPL-91	NM_032954	exon9	c.C1355A	p.P452H	GCTGCAGGAGCAG	.	27	6	12	0	.	14	6	8	0	0	T	73011760	G	T	73011760	3	4	38	1	0	0	0	0	1	0	0	0	9665	1000	35	3	1239	3	MLXIPL	7	73011760	Missense_Mutation	SNP	G	TCGA-OR-A5KW-01A-11D-A29I-10	19907776	73011760	86126903	39	8577										
MBLAC1	255374	hgsc.bcm.edu	37	chr7	99725210	99725210	+	Silent	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0425531914893617	4	1	0.964685237990787	1.41688144329897	0.731293648154307	1	1	0	caccgagagtccccgcgcggGagtggcggcgcagaggccgc	18	15	0	2	rs142426754		TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	67dfc56a-abc7-40c7-a901-6512ec38d5f5	804ec9eb-9f16-4ab9-b2dd-2abb72a53348	.	MBLAC1-135	NM_203397	exon2	c.G192T	p.G64G	GCGCGGGAGTGGC	.	11	7	0	0	G|0.976;T|0.024	1	0	1	0	0	T	99725210	G	T	99725210	2	4	38	1	0	0	0	0	0	0	0	1	9379	1161	41	3		3	MBLAC1	7	99725210	Silent	SNP	G	TCGA-OR-A5KW-01A-11D-A29I-10	26713450	99725210	59413453	40	8578										
FLNC	2318	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	128496863	128496863	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0425531914893617	4	1	0.964685237990787	1.41688144329897	0.731293648154307	1	1	0	tccatcgatgtcaagttcaaCggtgcccacatccctggaag	9	13	2	0	novel		TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	67dfc56a-abc7-40c7-a901-6512ec38d5f5	804ec9eb-9f16-4ab9-b2dd-2abb72a53348	.	FLNC-141	NM_001458	exon45	c.C7449G	p.N2483K	GTTCAACGGTGCC	.	303	123	217	0	.	1	1	0	0	0	G	128496863	C	G	128496863	3	3	38	1	0	0	0	0	1	0	0	0	5954	535	19	2	7627	2	FLNC	7	128496863	Missense_Mutation	SNP	C	TCGA-OR-A5KW-01A-11D-A29I-10	28771653	128496863	30641800	41	8579										
KEL	3792	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	142651025	142651025	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0425531914893617	4	1	0.964685237990787	1.41688144329897	0.731293648154307	1	1	0	ttgcaagcaggacaaccagtCgatggcgggggccatttcct	13	11	0	0	novel		TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	67dfc56a-abc7-40c7-a901-6512ec38d5f5	804ec9eb-9f16-4ab9-b2dd-2abb72a53348	.	KEL-93	NM_000420	exon9	c.G943T	p.D315Y	ACCAGTCGATGGC	.	114	50	74	0	.	0	0	0	0	0	A	142651025	C	A	142651025	3	1	38	1	0	0	0	0	1	0	0	0	8163	884	31	2	1299	2	KEL	7	142651025	Missense_Mutation	SNP	C	TCGA-OR-A5KW-01A-11D-A29I-10	14154162	142651025	16487638	42	8580										
BHLHE22	27319	hgsc.bcm.edu	37	chr8	65493532	65493532	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0425531914893617	4	1	0.964685237990787	1.41688144329897	0.731293648154307	1	1	0	gtcctcctcctcgtcgccccTgggctgcttcgagccggctg	12	18	0	0	rs62519835		TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	67dfc56a-abc7-40c7-a901-6512ec38d5f5	804ec9eb-9f16-4ab9-b2dd-2abb72a53348	.	BHLHE22-90	NM_152414	exon1	c.T185A	p.L62Q	CGCCCCTGGGCTG	.	9	9	0	0	T|0.935;A|0.065	0	0	0	0	0	A	65493532	T	A	65493532	3	1	38	1	0	0	0	0	1	0	0	0	1422	1580	55	5	187	5	BHLHE22	8	65493532	Missense_Mutation	SNP	T	TCGA-OR-A5KW-01A-11D-A29I-10		65493532	80870490	43	8581										
ZBTB10	65986	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr8	81399960	81399962	+	In_Frame_Del	DEL	CCT	CCT	-													0.0425531914893617	4	1	0.964685237990787	1.41688144329897	0.731293648154307	1	1	0	acccgcaactacaagaaaacCctcctcctgaggcaccacgt					novel		TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10	CCT	CCT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	67dfc56a-abc7-40c7-a901-6512ec38d5f5	804ec9eb-9f16-4ab9-b2dd-2abb72a53348	.	ZBTB10-522	NM_023929	exon1	c.915_917del	p.305_306del	GAAAACCCTCCTC	.	68	33	39	0	.	0	0	0	0	0	-	81399962	CCT	-	81399960	7	5	38	1	0	1	0	1	0	0	0	0	17560	610	22	0	917	0	ZBTB10	8	81399960	In_Frame_Del	DEL	CCT	TCGA-OR-A5KW-01A-11D-A29I-10	15906428	81399960	64964062	44	8582										
EPPK1	83481	bcgsc.ca	37	chr8	144940450	144940450	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0425531914893617	4	1	0.964685237990787	1.41688144329897	0.731293648154307	1	1	0	acgatgaggtccttctgcatGgcctggaagagggagatctg	15	8	2	3	rs56258403		TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	67dfc56a-abc7-40c7-a901-6512ec38d5f5	804ec9eb-9f16-4ab9-b2dd-2abb72a53348	.	EPPK1-25	NM_031308	exon1	c.C6972G	p.A2324A	CTGCATGGCCTGG	.	427	18	123	1	.	1	1	0	0	0	C	144940450	G	C	144940450	2	2	38	1	0	0	0	0	0	0	0	1	5203	1335	47	3		3	EPPK1	8	144940450	Silent	SNP	G	TCGA-OR-A5KW-01A-11D-A29I-10	63540490	144940450	1423572	45	8583										
PLEC	5339	hgsc.bcm.edu	37	chr8	144990528	144990528	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0425531914893617	4	1	0.964685237990787	1.41688144329897	0.731293648154307	1	1	0	cgcgagccggtgcgggagccAgcggtagagccggagccgct	19	13	0	1	rs7014582	byfrequency	TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	67dfc56a-abc7-40c7-a901-6512ec38d5f5	804ec9eb-9f16-4ab9-b2dd-2abb72a53348	.	PLEC-141	NM_201380	exon32	c.T13872C	p.A4624A	GGAGCCAGCGGTA	.	28	10	0	0	A|0.536;G|0.464	50	30	20	0	0	G	144990528	A	G	144990528	2	3	38	1	0	0	0	0	0	0	0	1	12081	175	7	4		4	PLEC	8	144990528	Silent	SNP	A	TCGA-OR-A5KW-01A-11D-A29I-10	50078	144990528	1373494	46	8584										
PLEC	5339	hgsc.bcm.edu	37	chr8	144990784	144990784	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0425531914893617	4	1	0.964685237990787	1.41688144329897	0.731293648154307	1	1	0	ccaggggcacgcggcccggcGtgtcgggctcgatcaagccg	17	15	1	0	rs113513807	byfrequency	TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	67dfc56a-abc7-40c7-a901-6512ec38d5f5	804ec9eb-9f16-4ab9-b2dd-2abb72a53348	.	PLEC-141	NM_201380	exon32	c.C13616T	p.T4539M	CCCGGCGTGTCGG	.	35	15	0	0	A|0.013;C|0.000;G|0.987	72	42	30	0	0	A	144990784	G	A	144990784	3	1	38	1	0	0	0	0	1	0	0	0	12081	1145	40	1	442	1	PLEC	8	144990784	Missense_Mutation	SNP	G	TCGA-OR-A5KW-01A-11D-A29I-10	256	144990784	1373238	47	8585										
PLEC	5339	hgsc.bcm.edu	37	chr8	144999417	144999417	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0425531914893617	4	1	0.964685237990787	1.41688144329897	0.731293648154307	1	1	0	agggccacctgtacctgccgCgctcgctccacctcggcctg	11	19	0	0	rs55836855	byfrequency	TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	67dfc56a-abc7-40c7-a901-6512ec38d5f5	804ec9eb-9f16-4ab9-b2dd-2abb72a53348	.	PLEC-141	NM_201380	exon31	c.G5091A	p.A1697A	CTGCCGCGCTCGC	.	6	5	0	0	C|0.731;T|0.269	1	1	0	0	0	T	144999417	C	T	144999417	2	4	38	1	0	0	0	0	0	0	0	1	12081	755	27	1		1	PLEC	8	144999417	Silent	SNP	C	TCGA-OR-A5KW-01A-11D-A29I-10	8633	144999417	1364605	48	8586										
CPSF1	29894	broad.mit.edu	37	chr8	145623200	145623200	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0425531914893617	4	1	0.964685237990787	1.41688144329897	0.731293648154307	1	1	0	ggggcttgtgcagcgccaggCggtggtggcggccaccgtag	20	11	0	0	novel		TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	67dfc56a-abc7-40c7-a901-6512ec38d5f5	804ec9eb-9f16-4ab9-b2dd-2abb72a53348	.	CPSF1-91	NM_013291	exon20	c.G2042A	p.R681H	GCCAGGCGGTGGT	.	85	5	28	2	.	22	22	0	0	0	T	145623200	C	T	145623200	3	4	38	1	0	0	0	0	1	0	0	0	3830	768	27	1	2365	1	CPSF1	8	145623200	Missense_Mutation	SNP	C	TCGA-OR-A5KW-01A-11D-A29I-10	623783	145623200	740822	49	8587										
KIF12	113220	broad.mit.edu	37	chr9	116854241	116854241	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0425531914893617	4	1	0.964685237990787	1.41688144329897	0.731293648154307	1	1	0	tgccaatctggtctctgaggGcctccagtctctgggccagg	13	13	3	1	novel		TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	67dfc56a-abc7-40c7-a901-6512ec38d5f5	804ec9eb-9f16-4ab9-b2dd-2abb72a53348	.	KIF12-90	NM_138424	exon16	c.C1442A	p.A481D	CTGAGGGCCTCCA	.	102	10	83	1	.	0	0	0	0	0	T	116854241	G	T	116854241	3	4	38	1	0	0	0	0	1	0	0	0	8294	1203	42	3	103	3	KIF12	9	116854241	Missense_Mutation	SNP	G	TCGA-OR-A5KW-01A-11D-A29I-10		116854241	24359190	50	8588										
SFTPD	6441	broad.mit.edu;bcgsc.ca	37	chr10	81706389	81706389	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0425531914893617	4	1	0.964685237990787	1.41688144329897	0.731293648154307	1	1	0	aggggctgtgtgagcaggacCagtgcagagaggaggaagag	20	5	0	3	novel		TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	67dfc56a-abc7-40c7-a901-6512ec38d5f5	804ec9eb-9f16-4ab9-b2dd-2abb72a53348	.	SFTPD-91	NM_003019	exon2	c.G27T	p.L9L	CAGGACCAGTGCA	.	151	7	161	0	.	0	0	0	0	0	A	81706389	C	A	81706389	2	1	38	1	0	0	0	0	0	0	0	1	14228	581	21	3		3	SFTPD	10	81706389	Silent	SNP	C	TCGA-OR-A5KW-01A-11D-A29I-10		81706389	53828358	51	8589										
ABCC2	1244	broad.mit.edu	37	chr10	101594155	101594155	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0425531914893617	4	1	0.964685237990787	1.41688144329897	0.731293648154307	1	1	0	aggatatttccacagtggatGacaccctgcctcagtccttg	9	12	1	1	novel		TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	67dfc56a-abc7-40c7-a901-6512ec38d5f5	804ec9eb-9f16-4ab9-b2dd-2abb72a53348	.	ABCC2-91	NM_000392	exon24	c.G3277A	p.D1093N	GTGGATGACACCC	.	146	5	191	0	.	0	0	0	0	0	A	101594155	G	A	101594155	3	1	38	1	0	0	0	0	1	0	0	0	53	1290	45	3	3371	3	ABCC2	10	101594155	Missense_Mutation	SNP	G	TCGA-OR-A5KW-01A-11D-A29I-10	19887766	101594155	33940592	52	8590										
KCNJ11	3767	bcgsc.ca	37	chr11	17408831	17408831	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0425531914893617	4	1	0.964685237990787	1.41688144329897	0.731293648154307	1	1	0	gtgcaggtcgctgggtgccaGgtcgtagagtgggctgttgg	20	7	0	1	rs1800467	byfrequency	TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	67dfc56a-abc7-40c7-a901-6512ec38d5f5	804ec9eb-9f16-4ab9-b2dd-2abb72a53348	.	KCNJ11-91	NM_000525	exon1	c.C808G	p.L270V	GTGCCAGGTCGTA	.	175	6	192	2	G|0.734;C|0.266	0	0	0	0	0	C	17408831	G	C	17408831	3	2	38	1	0	0	0	0	1	0	0	0	8066	991	35	3	368	3	KCNJ11	11	17408831	Missense_Mutation	SNP	G	TCGA-OR-A5KW-01A-11D-A29I-10		17408831	117597685	53	8591										
NRXN2	9379	hgsc.bcm.edu	37	chr11	64480641	64480641	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0425531914893617	4	1	0.964685237990787	1.41688144329897	0.731293648154307	1	1	0	agcttcaggttggccaagagGccgcggaagggcggctcgta	17	10	1	1	rs2518907		TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	67dfc56a-abc7-40c7-a901-6512ec38d5f5	804ec9eb-9f16-4ab9-b2dd-2abb72a53348	.	NRXN2-232	NM_138732	exon2	c.C531T	p.G177G	CAAGAGGCCGCGG	.	6	6	0	0	G|0.449;A|0.551	0	0	0	0	0	A	64480641	G	A	64480641	2	1	38	1	0	0	0	0	0	0	0	1	10695	1190	42	3		3	NRXN2	11	64480641	Silent	SNP	G	TCGA-OR-A5KW-01A-11D-A29I-10	47071810	64480641	70525875	54	8592										
MEN1	4221	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	64573817	64573817	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0425531914893617	4	1	0.964685237990787	1.41688144329897	0.731293648154307	1	1	0	tagatgtgttcatcccgataGtaggtcttggctgaggcaat	12	7	2	2	novel		TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	67dfc56a-abc7-40c7-a901-6512ec38d5f5	804ec9eb-9f16-4ab9-b2dd-2abb72a53348	.	MEN1-3017	NM_130800	exon7	c.C951G	p.Y317X	CCGATAGTAGGTC	.	272	230	340	1	.	4	0	4	0	0	C	64573817	G	C	64573817	4	2	38	1	0	0	0	0	0	1	0	0	9500	1024	36	3	912	3	MEN1	11	64573817	Nonsense_Mutation	SNP	G	TCGA-OR-A5KW-01A-11D-A29I-10	93176	64573817	70432699	55	8593										
GAL3ST3	89792	hgsc.bcm.edu	37	chr11	65810209	65810209	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0425531914893617	4	1	0.964685237990787	1.41688144329897	0.731293648154307	1	1	0	accttgcggctgggctgccaCggctgcagctgcttggtgcg	16	13	0	0	rs61895584	byfrequency	TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	67dfc56a-abc7-40c7-a901-6512ec38d5f5	804ec9eb-9f16-4ab9-b2dd-2abb72a53348	.	GAL3ST3-91	NM_033036	exon3	c.G1065A	p.P355P	CTGCCACGGCTGC	.	4	4	0	0	C|0.233;T|0.767	0	0	0	0	0	T	65810209	C	T	65810209	2	4	38	1	0	0	0	0	0	0	0	1	6219	523	19	1		1	GAL3ST3	11	65810209	Silent	SNP	C	TCGA-OR-A5KW-01A-11D-A29I-10	1236392	65810209	69196307	56	8594										
TMPRSS12	283471	bcgsc.ca	37	chr12	51237684	51237684	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0425531914893617	4	1	0.964685237990787	1.41688144329897	0.731293648154307	1	1	0	ctcggattatagggggcaccGaagcacaagctggcgcatgg	15	10	0	0	novel		TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	67dfc56a-abc7-40c7-a901-6512ec38d5f5	804ec9eb-9f16-4ab9-b2dd-2abb72a53348	.	.	NM_182559	exon2	c.G247A	p.E83K	GGCACCGAAGCAC	.	134	5	93	1	.	0	0	0	0	0	A	51237684	G	A	51237684	3	1	38	1	0	0	0	0	1	0	0	0	16281	1059	37	1	253	1	TMPRSS12	12	51237684	Missense_Mutation	SNP	G	TCGA-OR-A5KW-01A-11D-A29I-10		51237684	82614211	57	8595										
BTBD11	121551	hgsc.bcm.edu	37	chr12	107713511	107713511	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0425531914893617	4	1	0.964685237990787	1.41688144329897	0.731293648154307	1	1	0	ccggagctgcagtggccctgGgtcaggctcgggctccggcc	17	15	1	0	rs961498	byfrequency	TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	67dfc56a-abc7-40c7-a901-6512ec38d5f5	804ec9eb-9f16-4ab9-b2dd-2abb72a53348	.	BTBD11-93	NM_001018072	exon1	c.G794C	p.G265A	GCCCTGGGTCAGG	.	4	4	0	0	G|0.588;C|0.412	0	0	0	0	0	C	107713511	G	C	107713511	3	2	38	1	0	0	0	0	1	0	0	0	1542	1232	43	3	796	3	BTBD11	12	107713511	Missense_Mutation	SNP	G	TCGA-OR-A5KW-01A-11D-A29I-10	56475827	107713511	26138384	58	8596										
SETDB2	83852	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr13	50050649	50050649	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0425531914893617	4	1	0.964685237990787	1.41688144329897	0.731293648154307	1	1	0	aaattctctctcttgaagatAaagttgtagactttagagaa	7	5	2	4	novel		TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	67dfc56a-abc7-40c7-a901-6512ec38d5f5	804ec9eb-9f16-4ab9-b2dd-2abb72a53348	.	SETDB2-91	NM_031915	exon7	c.A379G	p.K127E	GAAGATAAAGTTG	.	120	42	84	1	.	8	7	1	0	0	G	50050649	A	G	50050649	3	3	38	1	0	0	0	0	1	0	0	0	14174	363	13	4	401	4	SETDB2	13	50050649	Missense_Mutation	SNP	A	TCGA-OR-A5KW-01A-11D-A29I-10		50050649	65119229	59	8597										
FOXG1	2290	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	29237769	29237769	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0425531914893617	4	1	0.964685237990787	1.41688144329897	0.731293648154307	1	1	0	ccgcacccgtcaatgacttcGcagagcagcacgtccatgag	10	15	1	3	novel		TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	67dfc56a-abc7-40c7-a901-6512ec38d5f5	804ec9eb-9f16-4ab9-b2dd-2abb72a53348	.	FOXG1-660	NM_005249	exon1	c.G1284A	p.S428S	GACTTCGCAGAGC	.	116	15	94	0	.	0	0	0	0	0	A	29237769	G	A	29237769	2	1	38	1	0	0	0	0	0	0	0	1	6026	1074	38	1		1	FOXG1	14	29237769	Silent	SNP	G	TCGA-OR-A5KW-01A-11D-A29I-10		29237769	78111771	60	8598										
JAG2	3714	broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr14	105622156	105622156	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0425531914893617	4	1	0.964685237990787	1.41688144329897	0.731293648154307	1	1	0	ggtgtagtggccgaaaaagtCgttgcggggccggcagaact	17	8	0	1	novel		TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	67dfc56a-abc7-40c7-a901-6512ec38d5f5	804ec9eb-9f16-4ab9-b2dd-2abb72a53348	.	JAG2-846	NM_145159	exon4	c.G646T	p.D216Y	AAAAGTCGTTGCG	.	432	123	123	1	.	3	3	0	0	0	A	105622156	C	A	105622156	3	1	38	1	0	0	0	0	1	0	0	0	7956	884	31	2	3162	2	JAG2	14	105622156	Missense_Mutation	SNP	C	TCGA-OR-A5KW-01A-11D-A29I-10	76384387	105622156	1727384	61	8599										
LACTB	114294	hgsc.bcm.edu	37	chr15	63414083	63414083	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0425531914893617	4	1	0.964685237990787	1.41688144329897	0.731293648154307	1	1	0	gagacgccatgtaccggctcAtgtcagcagtgactgcccgg	13	13	2	2	rs34317102	byfrequency	TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	67dfc56a-abc7-40c7-a901-6512ec38d5f5	804ec9eb-9f16-4ab9-b2dd-2abb72a53348	.	LACTB-90	NM_171846	exon1	c.A13C	p.M5L	CGGCTCATGTCAG	.	9	9	0	0	A|0.226;C|0.774	4	0	4	0	0	C	63414083	A	C	63414083	3	2	38	1	0	0	0	0	1	0	0	0	8619	217	8	5	15	5	LACTB	15	63414083	Missense_Mutation	SNP	A	TCGA-OR-A5KW-01A-11D-A29I-10		63414083	39117309	62	8600										
DAPK2	23604	broad.mit.edu	37	chr15	64275869	64275869	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0425531914893617	4	1	0.964685237990787	1.41688144329897	0.731293648154307	1	1	0	acaccgcgccggctcgcccgGctctgccgcttcttgatgaa	11	17	2	2	novel		TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	67dfc56a-abc7-40c7-a901-6512ec38d5f5	804ec9eb-9f16-4ab9-b2dd-2abb72a53348	.	DAPK2-333	NM_014326	exon3	c.C177A	p.S59R	CGCCCGGCTCTGC	.	167	11	47	1	.	7	7	0	0	0	T	64275869	G	T	64275869	3	4	38	1	0	0	0	0	1	0	0	0	4242	1194	42	3	975	3	DAPK2	15	64275869	Missense_Mutation	SNP	G	TCGA-OR-A5KW-01A-11D-A29I-10	861786	64275869	38255523	63	8601										
LCTL	197021	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr15	66850065	66850065	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0425531914893617	4	1	0.964685237990787	1.41688144329897	0.731293648154307	1	1	0	tgagactgggctcaccaatgTagtccttcatgacttggggg	13	9	2	2	novel		TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	67dfc56a-abc7-40c7-a901-6512ec38d5f5	804ec9eb-9f16-4ab9-b2dd-2abb72a53348	.	LCTL-92	NM_207338	exon8	c.A917G	p.Y306C	CCAATGTAGTCCT	.	120	7	105	0	.	0	0	0	0	0	C	66850065	T	C	66850065	3	2	38	1	0	0	0	0	1	0	0	0	8716	1638	57	4	810	4	LCTL	15	66850065	Missense_Mutation	SNP	T	TCGA-OR-A5KW-01A-11D-A29I-10	2574196	66850065	35681327	64	8602										
ADAMTS7	11173	broad.mit.edu	37	chr15	79059160	79059160	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0425531914893617	4	1	0.964685237990787	1.41688144329897	0.731293648154307	1	1	0	ggcttgggtgatgaggcgggTgaagggcgtggggccaggtg	24	5	0	3	novel		TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	67dfc56a-abc7-40c7-a901-6512ec38d5f5	804ec9eb-9f16-4ab9-b2dd-2abb72a53348	.	ADAMTS7-226	NM_014272	exon19	c.A3093C	p.S1031S	GGCGGGTGAAGGG	.	89	30	17	2	.	30	24	6	0	0	G	79059160	T	G	79059160	2	3	38	1	0	0	0	0	0	0	0	1	271	1683	59	5		5	ADAMTS7	15	79059160	Silent	SNP	T	TCGA-OR-A5KW-01A-11D-A29I-10	12209095	79059160	23472232	65	8603										
PLIN1	5346	hgsc.bcm.edu	37	chr15	90209135	90209135	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0425531914893617	4	1	0.964685237990787	1.41688144329897	0.731293648154307	1	1	0	ggtgggttgtcgatgtcccgGaattcgctctcgggctccat	14	11	1	0	rs8179074	byfrequency	TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	67dfc56a-abc7-40c7-a901-6512ec38d5f5	804ec9eb-9f16-4ab9-b2dd-2abb72a53348	.	PLIN1-91	NM_001145311	exon9	c.C1248T	p.F416F	GTCCCGGAATTCG	.	8	6	0	0	G|0.976;A|0.024	0	0	0	0	0	A	90209135	G	A	90209135	2	1	38	1	0	0	0	0	0	0	0	1	12118	1165	41	3		3	PLIN1	15	90209135	Silent	SNP	G	TCGA-OR-A5KW-01A-11D-A29I-10	11149975	90209135	12322257	66	8604										
SMG1	23049	hgsc.bcm.edu	37	chr16	18937330	18937330	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0425531914893617	4	1	0.964685237990787	1.41688144329897	0.731293648154307	1	1	0	gccgccgccgccgccgccgcTgctcagccgagaccccgggg	15	21	1	1	rs190057031		TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	67dfc56a-abc7-40c7-a901-6512ec38d5f5	804ec9eb-9f16-4ab9-b2dd-2abb72a53348	.	SMG1-1160	NM_015092	exon1	c.A34G	p.S12G	CGCCGCTGCTCAG	.	70	26	3	0	T|0.974;C|0.026	4	1	3	0	0	C	18937330	T	C	18937330	3	2	38	1	0	0	0	0	1	0	0	0	14830	1580	55	4	11203	4	SMG1	16	18937330	Missense_Mutation	SNP	T	TCGA-OR-A5KW-01A-11D-A29I-10		18937330	71417423	67	8605										
SEZ6L2	26470	hgsc.bcm.edu	37	chr16	29908433	29908433	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0425531914893617	4	1	0.964685237990787	1.41688144329897	0.731293648154307	1	1	0	gggtggctagcgtggggtccCgatcagatcctgggacagtg	18	9	1	1	rs11649499	byfrequency	TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	67dfc56a-abc7-40c7-a901-6512ec38d5f5	804ec9eb-9f16-4ab9-b2dd-2abb72a53348	.	SEZ6L2-92	NM_001243332	exon3	c.G221C	p.R74P	GGGTCCCGATCAG	.	6	4	2	0	C|0.218;G|0.782	1	1	0	0	0	G	29908433	C	G	29908433	3	3	38	1	0	0	0	0	1	0	0	0	14179	652	23	2	2614	2	SEZ6L2	16	29908433	Missense_Mutation	SNP	C	TCGA-OR-A5KW-01A-11D-A29I-10	10971103	29908433	60446320	68	8606										
ARMC5	79798	hgsc.bcm.edu	37	chr16	31475864	31475864	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0425531914893617	4	1	0.964685237990787	1.41688144329897	0.731293648154307	1	1	0	accacgcacccaacgcactcCgggccgcagccccgccgccg	10	23	0	0	rs142376949		TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	67dfc56a-abc7-40c7-a901-6512ec38d5f5	804ec9eb-9f16-4ab9-b2dd-2abb72a53348	.	ARMC5-24	NM_024742	exon4	c.C1520T	p.P507L	GCACTCCGGGCCG	.	13	6	0	0	C|0.991;T|0.009	11	3	8	0	0	T	31475864	C	T	31475864	3	4	38	1	0	0	0	0	1	0	0	0	955	652	23	1	1534	1	ARMC5	16	31475864	Missense_Mutation	SNP	C	TCGA-OR-A5KW-01A-11D-A29I-10	1567431	31475864	58878889	69	8607										
CMTM1	113540	broad.mit.edu	37	chr16	66600431	66600431	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0425531914893617	4	1	0.964685237990787	1.41688144329897	0.731293648154307	1	1	0	cccaccatggatcctgaacaCgccaaacctgagtcatccga	7	16	1	2	novel		TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	67dfc56a-abc7-40c7-a901-6512ec38d5f5	804ec9eb-9f16-4ab9-b2dd-2abb72a53348	.	CMTM1-90	NM_181271	exon1	c.C15T	p.H5H	TGAACACGCCAAA	.	61	29	36	1	.	3	2	1	0	0	T	66600431	C	T	66600431	2	4	38	1	0	0	0	0	0	0	0	1	3588	535	19	1		1	CMTM1	16	66600431	Silent	SNP	C	TCGA-OR-A5KW-01A-11D-A29I-10	35124567	66600431	23754322	70	8608										
ZFPM1	161882	hgsc.bcm.edu	37	chr16	88599696	88599697	+	Frame_Shift_Del	DEL	GA	GA	-													0.0425531914893617	4	1	0.964685237990787	1.41688144329897	0.731293648154307	1	1	0	ccaacggagaggccagagcgGagcctctggcccagaatgga					rs67549438	alternate_allele	TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10	GA	GA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	67dfc56a-abc7-40c7-a901-6512ec38d5f5	804ec9eb-9f16-4ab9-b2dd-2abb72a53348	.	ZFPM1-90	NM_153813	exon10	c.1330_1331del	p.444_444del	AGAGCGGAGCCTC	.	28	13	0	0	.	0	0	0	0	0	-	88599697	GA	-	88599696	7	5	38	1	0	1	0	1	0	0	0	0	17694	1175	41	0	1368	0	ZFPM1	16	88599696	Frame_Shift_Del	DEL	GA	TCGA-OR-A5KW-01A-11D-A29I-10	21999265	88599696	1755057	71	8609	94	4								
ZFPM1	161882	hgsc.bcm.edu	37	chr16	88599697	88599705	+	In_Frame_Del	DEL	AGCCTCTGG	AGCCTCTGG	-													0.0425531914893617	4	1	0.964685237990787	1.41688144329897	0.731293648154307	1	1	0	caacggagaggccagagcggAgcctctggcccagaatggag					novel		TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10	AGCCTCTGG	AGCCTCTGG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	67dfc56a-abc7-40c7-a901-6512ec38d5f5	804ec9eb-9f16-4ab9-b2dd-2abb72a53348	.	ZFPM1-90	NM_153813	exon10	c.1331_1339del	p.444_447del	GAGCGGAGCCTCT	.	27	0	0	0	.	0	0	0	0	0	-	88599705	AGCCTCTGG	-	88599697	7	5	38	1	0	1	0	1	0	0	0	0	17694	304	11	0	1369	0	ZFPM1	16	88599697	In_Frame_Del	DEL	AGCCTCTGG	TCGA-OR-A5KW-01A-11D-A29I-10	1	88599697	1755056	72	8610	94	4								
ZFPM1	161882	hgsc.bcm.edu	37	chr16	88599701	88599701	+	Frame_Shift_Del	DEL	T	T	-													0.0425531914893617	4	1	0.964685237990787	1.41688144329897	0.731293648154307	1	1	0	ggagaggccagagcggagccTctggcccagaatggaggcag					novel		TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	67dfc56a-abc7-40c7-a901-6512ec38d5f5	804ec9eb-9f16-4ab9-b2dd-2abb72a53348	.	ZFPM1-90	NM_153813	exon10	c.1335delT	p.P445fs	GGAGCCTCTGGCC	.	17	13	0	0	.	0	0	0	0	0	-	88599701	T	-	88599701	7	5	38	1	0	1	0	1	0	0	0	0	17694	1538	54	0	1373	0	ZFPM1	16	88599701	Frame_Shift_Del	DEL	T	TCGA-OR-A5KW-01A-11D-A29I-10	4	88599701	1755052	73	8611	94	4								
ZFPM1	161882	hgsc.bcm.edu	37	chr16	88599703	88599705	+	In_Frame_Del	DEL	TGG	TGG	-													0.0425531914893617	4	1	0.964685237990787	1.41688144329897	0.731293648154307	1	1	0	agaggccagagcggagcctcTggcccagaatggaggcagca					novel		TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10	TGG	TGG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	67dfc56a-abc7-40c7-a901-6512ec38d5f5	804ec9eb-9f16-4ab9-b2dd-2abb72a53348	.	ZFPM1-90	NM_153813	exon10	c.1337_1339del	p.446_447del	AGCCTCTGGCCCA	.	15	13	0	0	.	0	0	0	0	0	-	88599705	TGG	-	88599703	7	5	38	1	0	1	0	1	0	0	0	0	17694	1580	55	0	1375	0	ZFPM1	16	88599703	In_Frame_Del	DEL	TGG	TCGA-OR-A5KW-01A-11D-A29I-10	2	88599703	1755050	74	8612	94	4								
C16orf3	750	bcgsc.ca	37	chr16	90095573	90095573	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0425531914893617	4	1	0.964685237990787	1.41688144329897	0.731293648154307	1	1	0	gcagcctacggggcaggctaCggggcagcttacggggcagg	19	11	0	0	rs77382359		TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	67dfc56a-abc7-40c7-a901-6512ec38d5f5	804ec9eb-9f16-4ab9-b2dd-2abb72a53348	.	C16orf3-90	NM_001214	exon1	c.G178A	p.V60I	AGGCTACGGGGCA	.	155	14	62	0	C|0.500;T|0.500	0	0	0	0	0	T	90095573	C	T	90095573	3	4	38	1	0	0	0	0	1	0	0	0	1816	536	19	1	179	1	C16orf3	16	90095573	Missense_Mutation	SNP	C	TCGA-OR-A5KW-01A-11D-A29I-10	1495870	90095573	259180	75	8613										
GSG2	83903	hgsc.bcm.edu	37	chr17	3627456	3627456	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0425531914893617	4	1	0.964685237990787	1.41688144329897	0.731293648154307	1	1	0	cgacttccccggcagcccggTgaggcggcggcggaggcgtc	18	15	0	1	rs11653889	byfrequency	TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	67dfc56a-abc7-40c7-a901-6512ec38d5f5	804ec9eb-9f16-4ab9-b2dd-2abb72a53348	.	GSG2-297	NM_031965	exon1	c.T227A	p.V76E	GCCCGGTGAGGCG	.	16	13	1	0	T|0.995;A|0.005	1	0	1	0	0	A	3627456	T	A	3627456	3	1	38	1	0	0	0	0	1	0	0	0	6843	1696	59	5	229	5	GSG2	17	3627456	Missense_Mutation	SNP	T	TCGA-OR-A5KW-01A-11D-A29I-10		3627456	77567754	76	8614										
ENO3	2027	bcgsc.ca	37	chr17	4856580	4856580	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0425531914893617	4	1	0.964685237990787	1.41688144329897	0.731293648154307	1	1	0	cttccagaaactaagcgttgTggatcaagaaaaagttgaca	9	7	1	3	rs238239	byfrequency	TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	67dfc56a-abc7-40c7-a901-6512ec38d5f5	804ec9eb-9f16-4ab9-b2dd-2abb72a53348	.	ENO3-227	NM_001976	exon5	c.T254C	p.V85A	GCGTTGTGGATCA	.	179	10	199	2	T|0.602;C|0.398	1	1	0	0	0	C	4856580	T	C	4856580	3	2	38	1	0	0	0	0	1	0	0	0	5136	1696	59	4	268	4	ENO3	17	4856580	Missense_Mutation	SNP	T	TCGA-OR-A5KW-01A-11D-A29I-10	1229124	4856580	76338630	77	8615										
NLGN2	57555	hgsc.bcm.edu	37	chr17	7320874	7320874	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0425531914893617	4	1	0.964685237990787	1.41688144329897	0.731293648154307	1	1	0	gcggggtggtggcgtcggggCggaccctgccgaggctctgc	21	12	1	0	rs62061174		TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	67dfc56a-abc7-40c7-a901-6512ec38d5f5	804ec9eb-9f16-4ab9-b2dd-2abb72a53348	.	NLGN2-90	NM_020795	exon7	c.C2264T	p.A755V	TCGGGGCGGACCC	.	11	9	0	0	C|0.986;T|0.014	1	0	1	0	0	T	7320874	C	T	7320874	3	4	38	1	0	0	0	0	1	0	0	0	10491	768	27	1	2290	1	NLGN2	17	7320874	Missense_Mutation	SNP	C	TCGA-OR-A5KW-01A-11D-A29I-10	2464294	7320874	73874336	78	8616										
MAPK7	5598	broad.mit.edu	37	chr17	19285118	19285118	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0425531914893617	4	1	0.964685237990787	1.41688144329897	0.731293648154307	1	1	0	ccccagcgcacccctggaggCtcctgagcctcggaagccgg	13	18	0	1	novel		TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	67dfc56a-abc7-40c7-a901-6512ec38d5f5	804ec9eb-9f16-4ab9-b2dd-2abb72a53348	.	MAPK7-1402	NM_002749	exon5	c.C1502A	p.A501D	TGGAGGCTCCTGA	.	56	9	11	0	.	25	24	1	0	0	A	19285118	C	A	19285118	3	1	38	1	0	0	0	0	1	0	0	0	9310	797	28	3	1516	3	MAPK7	17	19285118	Missense_Mutation	SNP	C	TCGA-OR-A5KW-01A-11D-A29I-10	11964244	19285118	61910092	79	8617										
G6PC	2538	hgsc.bcm.edu;bcgsc.ca	37	chr17	41063167	41063167	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0425531914893617	4	1	0.964685237990787	1.41688144329897	0.731293648154307	1	1	0	agcctcctcaagaacctgggCacgctctttggcctggggct	12	14	2	1	novel		TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	67dfc56a-abc7-40c7-a901-6512ec38d5f5	804ec9eb-9f16-4ab9-b2dd-2abb72a53348	.	G6PC-292	NM_000151	exon5	c.C798T	p.G266G	CCTGGGCACGCTC	.	148	8	156	0	.	0	0	0	0	0	T	41063167	C	T	41063167	2	4	38	1	0	0	0	0	0	0	0	1	6162	697	25	3		3	G6PC	17	41063167	Silent	SNP	C	TCGA-OR-A5KW-01A-11D-A29I-10	21778049	41063167	40132043	80	8618										
SCRN2	90507	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	45916995	45916995	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0425531914893617	4	1	0.964685237990787	1.41688144329897	0.731293648154307	1	1	0	cctcctgggcagagctgctcCgttccaaagccagcctggca	11	16	0	1	novel		TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	67dfc56a-abc7-40c7-a901-6512ec38d5f5	804ec9eb-9f16-4ab9-b2dd-2abb72a53348	.	SCRN2-91	NM_138355	exon4	c.G371A	p.R124Q	CTGCTCCGTTCCA	.	123	111	142	1	.	4	0	4	0	0	T	45916995	C	T	45916995	3	4	38	1	0	0	0	0	1	0	0	0	13974	652	23	1	944	1	SCRN2	17	45916995	Missense_Mutation	SNP	C	TCGA-OR-A5KW-01A-11D-A29I-10	4853828	45916995	35278215	81	8619										
AATK	9625	hgsc.bcm.edu	37	chr17	79096115	79096115	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0425531914893617	4	1	0.964685237990787	1.41688144329897	0.731293648154307	1	1	0	gcagtcagggtcgtggccggCggcgggtgcggcctcctcta	18	13	2	0	rs61738821	byfrequency	TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	67dfc56a-abc7-40c7-a901-6512ec38d5f5	804ec9eb-9f16-4ab9-b2dd-2abb72a53348	.	AATK-933	NM_001080395	exon11	c.G1621A	p.A541T	GGCCGGCGGCGGG	.	4	4	0	0	C|0.850;T|0.150	0	0	0	0	0	T	79096115	C	T	79096115	3	4	38	1	0	0	0	0	1	0	0	0	26	768	27	1	2519	1	AATK	17	79096115	Missense_Mutation	SNP	C	TCGA-OR-A5KW-01A-11D-A29I-10	33179120	79096115	2099095	82	8620										
ARHGAP28	79822	bcgsc.ca	37	chr18	6890434	6890434	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0425531914893617	4	1	0.964685237990787	1.41688144329897	0.731293648154307	1	1	0	atttttcttctccaggttccAtctttcttaatcactcaagt	3	11	6	0	rs1116757	byfrequency	TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	67dfc56a-abc7-40c7-a901-6512ec38d5f5	804ec9eb-9f16-4ab9-b2dd-2abb72a53348	.	ARHGAP28-91	NM_001010000	exon13	c.A1263G	p.P421P	GGTTCCATCTTTC	.	174	8	242	3	A|0.426;G|0.574	0	0	0	0	0	G	6890434	A	G	6890434	2	3	38	1	0	0	0	0	0	0	0	1	877	204	8	4		4	ARHGAP28	18	6890434	Silent	SNP	A	TCGA-OR-A5KW-01A-11D-A29I-10		6890434	71186814	83	8621										
DSG2	1829	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr18	29102113	29102113	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0425531914893617	4	1	0.964685237990787	1.41688144329897	0.731293648154307	1	1	0	accctgaattcgaaaatttcCtatagaatcgtatctctgga	6	9	1	2	novel		TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	67dfc56a-abc7-40c7-a901-6512ec38d5f5	804ec9eb-9f16-4ab9-b2dd-2abb72a53348	.	DSG2-563	NM_001943	exon6	c.C591G	p.S197S	AATTTCCTATAGA	.	83	69	148	0	.	0	0	0	0	0	G	29102113	C	G	29102113	2	3	38	1	0	0	0	0	0	0	0	1	4788	668	24	3		3	DSG2	18	29102113	Silent	SNP	C	TCGA-OR-A5KW-01A-11D-A29I-10	22211679	29102113	48975135	84	8622										
ABCA7	10347	hgsc.bcm.edu	37	chr19	1065044	1065044	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0425531914893617	4	1	0.964685237990787	1.41688144329897	0.731293648154307	1	1	0	ctgcgcgaggcacatggaggCcgcctgcgcttccagctgcc	14	16	0	0	rs4147935	byfrequency	TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	67dfc56a-abc7-40c7-a901-6512ec38d5f5	804ec9eb-9f16-4ab9-b2dd-2abb72a53348	.	ABCA7-98	NM_019112	exon46	c.C6159T	p.G2053G	TGGAGGCCGCCTG	.	12	8	0	0	C|0.766;T|0.234	8	6	2	0	0	T	1065044	C	T	1065044	2	4	38	1	0	0	0	0	0	0	0	1	37	726	26	3		3	ABCA7	19	1065044	Silent	SNP	C	TCGA-OR-A5KW-01A-11D-A29I-10		1065044	58063939	85	8623										
PGLS	25796	hgsc.bcm.edu	37	chr19	17622614	17622614	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0425531914893617	4	1	0.964685237990787	1.41688144329897	0.731293648154307	1	1	0	gcgcccgtttcgcgctcggcCtgtcgggcgggagcctcgtc	16	16	0	0	rs11086075	byfrequency	TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	67dfc56a-abc7-40c7-a901-6512ec38d5f5	804ec9eb-9f16-4ab9-b2dd-2abb72a53348	.	PGLS-90	NM_012088	exon1	c.C133T	p.L45L	CTCGGCCTGTCGG	.	5	5	0	0	C|0.617;T|0.383	27	0	27	0	0	T	17622614	C	T	17622614	2	4	38	1	0	0	0	0	0	0	0	1	11821	680	24	3		3	PGLS	19	17622614	Silent	SNP	C	TCGA-OR-A5KW-01A-11D-A29I-10	16557570	17622614	41506369	86	8624										
CILP2	148113	hgsc.bcm.edu	37	chr19	19651140	19651140	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0425531914893617	4	1	0.964685237990787	1.41688144329897	0.731293648154307	1	1	0	ccgcgaccgctggcgctggaAgcgcgcaccacggactgggc	16	16	0	0	rs4808970	byfrequency	TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	67dfc56a-abc7-40c7-a901-6512ec38d5f5	804ec9eb-9f16-4ab9-b2dd-2abb72a53348	.	CILP2-91	NM_153221	exon3	c.A291G	p.E97E	GCTGGAAGCGCGC	.	11	11	0	0	A|0.873;G|0.127	0	0	0	0	0	G	19651140	A	G	19651140	2	3	38	1	0	0	0	0	0	0	0	1	3436	69	3	4		4	CILP2	19	19651140	Silent	SNP	A	TCGA-OR-A5KW-01A-11D-A29I-10	2028526	19651140	39477843	87	8625										
ERCC2	2068	hgsc.bcm.edu	37	chr19	45867259	45867259	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0425531914893617	4	1	0.964685237990787	1.41688144329897	0.731293648154307	1	1	0	ctcaccctgcagcacttcgtCgggcagcacggggttggcca	13	15	1	0	rs1799793	byfrequency	TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	67dfc56a-abc7-40c7-a901-6512ec38d5f5	804ec9eb-9f16-4ab9-b2dd-2abb72a53348	.	ERCC2-848	NM_000400	exon10	c.G934A	p.D312N	CTTCGTCGGGCAG	.	4	4	0	0	C|0.804;T|0.196	15	0	15	0	0	T	45867259	C	T	45867259	3	4	38	1	0	0	0	0	1	0	0	0	5226	884	31	1	1461	1	ERCC2	19	45867259	Missense_Mutation	SNP	C	TCGA-OR-A5KW-01A-11D-A29I-10	26216119	45867259	13261724	88	8626										
PTGIR	5739	hgsc.bcm.edu	37	chr19	47127324	47127324	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0425531914893617	4	1	0.964685237990787	1.41688144329897	0.731293648154307	1	1	0	tcggtggccgccagtccggtCaccagcaccgcgaaggccga	14	16	1	0	rs2229128	byfrequency	TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	67dfc56a-abc7-40c7-a901-6512ec38d5f5	804ec9eb-9f16-4ab9-b2dd-2abb72a53348	.	PTGIR-522	NM_000960	exon2	c.G159C	p.V53V	TCCGGTCACCAGC	.	12	12	0	0	C|0.254;G|0.746	0	0	0	0	0	G	47127324	C	G	47127324	2	3	38	1	0	0	0	0	0	0	0	1	12784	813	29	3		3	PTGIR	19	47127324	Silent	SNP	C	TCGA-OR-A5KW-01A-11D-A29I-10	1260065	47127324	12001659	89	8627										
ELSPBP1	64100	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr19	48525476	48525476	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0425531914893617	4	1	0.964685237990787	1.41688144329897	0.731293648154307	1	1	0	tgtcactttccgttcaactaTaaaaacaagaattattttaa	3	7	2	1	novel		TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	67dfc56a-abc7-40c7-a901-6512ec38d5f5	804ec9eb-9f16-4ab9-b2dd-2abb72a53348	.	ELSPBP1-90	NM_022142	exon6	c.T564C	p.Y188Y	CAACTATAAAAAC	.	305	22	166	0	.	6	6	0	0	0	C	48525476	T	C	48525476	2	2	38	1	0	0	0	0	0	0	0	1	5096	1413	49	4		4	ELSPBP1	19	48525476	Silent	SNP	T	TCGA-OR-A5KW-01A-11D-A29I-10	1398152	48525476	10603507	90	8628										
NTN5	126147	hgsc.bcm.edu	37	chr19	49164952	49164952	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0425531914893617	4	1	0.964685237990787	1.41688144329897	0.731293648154307	1	1	0	gtctagtgctccggcctgggActgggtgtgggtgcccgcac	17	12	1	0	rs281392	byfrequency	TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	67dfc56a-abc7-40c7-a901-6512ec38d5f5	804ec9eb-9f16-4ab9-b2dd-2abb72a53348	.	NTN5-136	NM_145807	exon7	c.T1452C	p.S484S	CCTGGGACTGGGT	.	6	6	0	0	A|0.464;G|0.536	2	0	2	0	0	G	49164952	A	G	49164952	2	3	38	1	0	0	0	0	0	0	0	1	10732	272	10	4		4	NTN5	19	49164952	Silent	SNP	A	TCGA-OR-A5KW-01A-11D-A29I-10	639476	49164952	9964031	91	8629										
ASPDH	554235	hgsc.bcm.edu	37	chr19	51015404	51015404	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0425531914893617	4	1	0.964685237990787	1.41688144329897	0.731293648154307	1	1	0	tggccgcacccaggaggctcTgccagaaggccgtgacggtg	16	13	1	2	rs12977172	byfrequency	TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	67dfc56a-abc7-40c7-a901-6512ec38d5f5	804ec9eb-9f16-4ab9-b2dd-2abb72a53348	.	ASPDH-90	NM_001114598	exon6	c.A797G	p.Q266R	AGGCTCTGCCAGA	.	22	22	0	0	T|0.228;C|0.772	1	0	1	0	0	C	51015404	T	C	51015404	3	2	38	1	0	0	0	0	1	0	0	0	1052	1580	55	4	62	4	ASPDH	19	51015404	Missense_Mutation	SNP	T	TCGA-OR-A5KW-01A-11D-A29I-10	1850452	51015404	8113579	92	8630										
ZNF808	388558	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	53058713	53058713	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0425531914893617	4	1	0.964685237990787	1.41688144329897	0.731293648154307	1	1	0	actggagagaaaccttacaaAtgtgaagcatgtgacaaagt	10	6	0	3	novel		TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	67dfc56a-abc7-40c7-a901-6512ec38d5f5	804ec9eb-9f16-4ab9-b2dd-2abb72a53348	.	.	NM_001039886	exon5	c.A2544G	p.K848K	TTACAAATGTGAA	.	108	39	52	0	.	4	4	0	0	0	G	53058713	A	G	53058713	2	3	38	1	0	0	0	0	0	0	0	1	18210	98	4	4		4	ZNF808	19	53058713	Silent	SNP	A	TCGA-OR-A5KW-01A-11D-A29I-10	2043309	53058713	6070270	93	8631										
DIDO1	11083	hgsc.bcm.edu	37	chr20	61512424	61512424	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0425531914893617	4	1	0.964685237990787	1.41688144329897	0.731293648154307	1	1	0	ttccagccgtcctgctcggaCcccgctgggggcttttcgcc	12	17	0	0	rs146466196	byfrequency	TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	67dfc56a-abc7-40c7-a901-6512ec38d5f5	804ec9eb-9f16-4ab9-b2dd-2abb72a53348	.	DIDO1-96	NM_001193369	exon16	c.G4884A	p.G1628G	CTCGGACCCCGCT	.	8	7	2	0	C|0.981;T|0.019	2	0	2	0	0	T	61512424	C	T	61512424	2	4	38	1	0	0	0	0	0	0	0	1	4533	494	18	3		3	DIDO1	20	61512424	Silent	SNP	C	TCGA-OR-A5KW-01A-11D-A29I-10		61512424	1513096	94	8632										
RFPL1	5988	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr22	29837551	29837551	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.0425531914893617	4	1	0.964685237990787	1.41688144329897	0.731293648154307	1	1	0	tggatatgaccttggatgccGacacagccaacaacttcctc	8	13	0	1	novel		TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	67dfc56a-abc7-40c7-a901-6512ec38d5f5	804ec9eb-9f16-4ab9-b2dd-2abb72a53348	.	RFPL1-90	NM_021026	exon2	c.G394C	p.D132H	GATGCCGACACAG	.	188	133	173	1	.	2	1	1	0	0	C	29837551	G	C	29837551	3	2	38	1	0	0	0	0	1	0	0	0	13288	1058	37	2	400	2	RFPL1	22	29837551	Missense_Mutation	SNP	G	TCGA-OR-A5KW-01A-11D-A29I-10		29837551	21467015	95	8633										
SRPX	8406	broad.mit.edu	37	chrX	38079976	38079978	+	In_Frame_Del	DEL	GCA	GCA	-													0.0425531914893617	4	1	0.964685237990787	1.41688144329897	0.731293648154307	1	1	0	gctgcggctgggcgggacgcGcagcagcagcagcagcagca					rs35523939	alternate_allele	TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	67dfc56a-abc7-40c7-a901-6512ec38d5f5	804ec9eb-9f16-4ab9-b2dd-2abb72a53348	.	SRPX-130	NM_001170751	exon1	c.68_70del	p.23_24del	GGACGCGCAGCAG	.	56	13	6	0	-|1.000;|0.000	0	0	0	0	0	-	38079978	GCA	-	38079976	7	5	38	1	0	1	0	1	0	0	0	0	15201	1087	38	0	1364	0	SRPX	23	38079976	In_Frame_Del	DEL	GCA	TCGA-OR-A5KW-01A-11D-A29I-10		38079976	117190584	96	8634										
ZNF157	7712	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	47230123	47230123	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0425531914893617	4	1	0.964685237990787	1.41688144329897	0.731293648154307	1	1	0	tgccctgattccaggagaacCtggcagatcttttgaggtaa	11	9	1	4	rs186352953	alternate_allele	TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	67dfc56a-abc7-40c7-a901-6512ec38d5f5	804ec9eb-9f16-4ab9-b2dd-2abb72a53348	.	ZNF157-130	NM_003446	exon1	c.C56A	p.P19H	GAGAACCTGGCAG	.	375	180	251	0	C|1.000;T|0.000	0	0	0	0	0	A	47230123	C	A	47230123	3	1	38	1	0	0	0	0	1	0	0	0	17774	681	24	3	58	3	ZNF157	23	47230123	Missense_Mutation	SNP	C	TCGA-OR-A5KW-01A-11D-A29I-10	9150147	47230123	108040437	97	8635										
MAGEA12	4111	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chrX	151900366	151900366	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0425531914893617	4	1	0.964685237990787	1.41688144329897	0.731293648154307	1	1	0	ctgaagatcacaggaaagaaGtcctggaaatttctgatgac	10	7	2	5	novel		TCGA-OR-A5KW-01A-11D-A29I-10	TCGA-OR-A5KW-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	67dfc56a-abc7-40c7-a901-6512ec38d5f5	804ec9eb-9f16-4ab9-b2dd-2abb72a53348	.	MAGEA12-131	NM_005367	exon2	c.C435T	p.D145D	AAAGAAGTCCTGG	.	539	39	680	0	.	0	0	0	0	0	A	151900366	G	A	151900366	2	1	38	1	0	0	0	0	0	0	0	1	9194	1020	36	3		3	MAGEA12	23	151900366	Silent	SNP	G	TCGA-OR-A5KW-01A-11D-A29I-10	104670243	151900366	3370194	98	8636										
ATP13A2	23400	bcgsc.ca	37	chr1	17326540	17326540	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0776699029126214	8	0.929330005145667	1.17866447278212	2.24399582318134	0.917356783061556	0.637186343068696	1	0	tcattcaccatgcactcgccGgccaccagggcggcatcaca	9	17	3	0	rs56290406	byfrequency	TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8369398d-9d6a-48dd-b20d-4e699ceddc1b	4b83e274-a5a1-430f-8ea8-70a4a64581c9	.	ATP13A2-93	NM_022089	exon11	c.C1005T	p.A335A	CTCGCCGGCCACC	.	100	6	130	1	G|0.962;A|0.038	5	5	0	0	0	A	17326540	G	A	17326540	2	1	39	1	0	0	0	0	0	0	0	1	1125	1103	39	1		1	ATP13A2	1	17326540	Silent	SNP	G	TCGA-OR-A5KX-01A-11D-A29I-10		17326540	231924081	1	8637										
SDHB	6390	bcgsc.ca	37	chr1	17371278	17371278	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0776699029126214	8	0.929330005145667	1.17866447278212	2.24399582318134	0.917356783061556	0.637186343068696	1	0	attaaggtcaacttcataagTctgcatatgaggtttgtctc	8	7	4	1	rs34599281	byfrequency	TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8369398d-9d6a-48dd-b20d-4e699ceddc1b	4b83e274-a5a1-430f-8ea8-70a4a64581c9	.	SDHB-658	NM_003000	exon2	c.A178G	p.T60A	CATAAGTCTGCAT	.	60	4	72	0	T|1.000;C|0.000	73	73	0	0	0	C	17371278	T	C	17371278	3	2	39	1	0	0	0	0	1	0	0	0	14000	1667	58	4	692	4	SDHB	1	17371278	Missense_Mutation	SNP	T	TCGA-OR-A5KX-01A-11D-A29I-10	44738	17371278	231879343	2	8638										
AKR7L	246181	bcgsc.ca	37	chr1	19600386	19600386	+	RNA	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0776699029126214	8	0.929330005145667	1.17866447278212	2.24399582318134	0.917356783061556	0.637186343068696	1	0	ctgctgcccattcggagcccCaggccgccaaggatggtctc	12	16	1	0	rs112053480	byfrequency	TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8369398d-9d6a-48dd-b20d-4e699ceddc1b	4b83e274-a5a1-430f-8ea8-70a4a64581c9	.	AKR7L-90	.	.	.	.	GAGCCCCAGGCCG	.	297	12	403	3	C|0.896;T|0.104	0	0	0	0	0	T	19600386	C	T	19600386	1	4	39	0	1	0	0	0	0	0	0	0	477	581	21	3		3	AKR7L	1	19600386	RNA	SNP	C	TCGA-OR-A5KX-01A-11D-A29I-10	2229108	19600386	229650235	3	8639										
HDAC1	3065	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	32797321	32797321	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0776699029126214	8	0.929330005145667	1.17866447278212	2.24399582318134	0.917356783061556	0.637186343068696	1	0	aatgctgccgcacgcacctgGggtccaaatgcaggcgattc	12	13	0	0	rs1140658	alternate_allele	TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8369398d-9d6a-48dd-b20d-4e699ceddc1b	4b83e274-a5a1-430f-8ea8-70a4a64581c9	.	HDAC1-659	NM_004964	exon11	c.G1133A	p.G378E	CACCTGGGGTCCA	.	130	80	190	1	G|1.000;|0.000	77	31	46	0	0	A	32797321	G	A	32797321	3	1	39	1	0	0	0	0	1	0	0	0	7025	1232	43	3	1175	3	HDAC1	1	32797321	Missense_Mutation	SNP	G	TCGA-OR-A5KX-01A-11D-A29I-10	13196935	32797321	216453300	4	8640										
SARS	6301	broad.mit.edu;bcgsc.ca	37	chr1	109772188	109772188	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0776699029126214	8	0.929330005145667	1.17866447278212	2.24399582318134	0.917356783061556	0.637186343068696	1	0	ccttctgtacccatcagtaaCgatgaggtaggtggctgtgc	12	10	2	1	novel		TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8369398d-9d6a-48dd-b20d-4e699ceddc1b	4b83e274-a5a1-430f-8ea8-70a4a64581c9	.	SARS-90	NM_006513	exon4	c.C441T	p.N147N	CAGTAACGATGAG	.	166	10	204	1	.	0	0	0	0	0	T	109772188	C	T	109772188	2	4	39	1	0	0	0	0	0	0	0	1	13879	535	19	1		1	SARS	1	109772188	Silent	SNP	C	TCGA-OR-A5KX-01A-11D-A29I-10	76974867	109772188	139478433	5	8641										
KRTCAP2	200185	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	155141958	155141958	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0776699029126214	8	0.929330005145667	1.17866447278212	2.24399582318134	0.917356783061556	0.637186343068696	1	0	cctgtgaccttggctggtgtGaggactggagctgctgcctg	16	10	0	2	novel		TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8369398d-9d6a-48dd-b20d-4e699ceddc1b	4b83e274-a5a1-430f-8ea8-70a4a64581c9	.	KRTCAP2-90	NM_173852	exon5	c.C447T	p.L149L	TGGTGTGAGGACT	.	260	170	271	0	.	333	107	226	0	0	A	155141958	G	A	155141958	2	1	39	1	0	0	0	0	0	0	0	1	8600	1277	45	3		3	KRTCAP2	1	155141958	Silent	SNP	G	TCGA-OR-A5KX-01A-11D-A29I-10	45369770	155141958	94108663	6	8642										
TOR1AIP2	163590	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	179816744	179816745	+	Frame_Shift_Del	DEL	TG	TG	-													0.0776699029126214	8	0.929330005145667	1.17866447278212	2.24399582318134	0.917356783061556	0.637186343068696	1	0	ctttaatttcttccaattttTgtgtttgttgtggatgactt					novel		TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10	TG	TG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8369398d-9d6a-48dd-b20d-4e699ceddc1b	4b83e274-a5a1-430f-8ea8-70a4a64581c9	.	TOR1AIP2-69	NM_001199260	exon6	c.580_581del	p.194_194del	AATTTTTGTGTTT	.	94	15	95	0	.	0	0	0	0	0	-	179816745	TG	-	179816744	7	5	39	1	0	1	0	1	0	0	0	0	16411	1812	63	0	839	0	TOR1AIP2	1	179816744	Frame_Shift_Del	DEL	TG	TCGA-OR-A5KX-01A-11D-A29I-10	24674786	179816744	69433877	7	8643										
C1orf106	55765	hgsc.bcm.edu	37	chr1	200880978	200880978	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0776699029126214	8	0.929330005145667	1.17866447278212	2.24399582318134	0.917356783061556	0.637186343068696	1	0	cgcctggcgagtgggagctgCgccgcgcagccccgggccct	17	17	0	0	rs296520	byfrequency	TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8369398d-9d6a-48dd-b20d-4e699ceddc1b	4b83e274-a5a1-430f-8ea8-70a4a64581c9	.	C1orf106-93	NM_018265	exon9	c.C1654T	p.R552C	GAGCTGCGCCGCG	.	16	16	0	0	C|0.242;T|0.758	0	0	0	0	0	T	200880978	C	T	200880978	3	4	39	1	0	0	0	0	1	0	0	0	1986	768	27	1	1646	1	C1orf106	1	200880978	Missense_Mutation	SNP	C	TCGA-OR-A5KX-01A-11D-A29I-10	21064234	200880978	48369643	8	8644										
CENPF	1063	hgsc.bcm.edu;bcgsc.ca	37	chr1	214814882	214814883	+	Frame_Shift_Ins	INS	-	-	A													0.0776699029126214	8	0.929330005145667	1.17866447278212	2.24399582318134	0.917356783061556	0.637186343068696	1	0	ctagtctttgtgaaaataggINSaaaaatgagttggaacagct					novel		TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8369398d-9d6a-48dd-b20d-4e699ceddc1b	4b83e274-a5a1-430f-8ea8-70a4a64581c9	.	CENPF-567	NM_016343	exon12	c.3201_3202insA	p.R1067fs	AAATAGGAAAAAT	.	221	149	244	2	.	0	0	0	0	0	A	214814883	-	A	214814882	7	5	39	1	0	1	1	0	0	0	0	0	3237	1165	41	0	3243	0	CENPF	1	214814882	Frame_Shift_Ins	INS	-	TCGA-OR-A5KX-01A-11D-A29I-10	13933904	214814882	34435739	9	8645										
SLC30A10	55532	broad.mit.edu	37	chr1	220101143	220101143	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0776699029126214	8	0.929330005145667	1.17866447278212	2.24399582318134	0.917356783061556	0.637186343068696	1	0	aggatgcaaccgaaaggcacCtgctacgtttgcgaacacgg	12	11	0	0	novel		TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8369398d-9d6a-48dd-b20d-4e699ceddc1b	4b83e274-a5a1-430f-8ea8-70a4a64581c9	.	SLC30A10-90	NM_018713	exon1	c.G640A	p.G214S	AGGCACCTGCTAC	.	106	5	121	0	.	0	0	0	0	0	T	220101143	C	T	220101143	3	4	39	1	0	0	0	0	1	0	0	0	14589	695	24	3	833	3	SLC30A10	1	220101143	Missense_Mutation	SNP	C	TCGA-OR-A5KX-01A-11D-A29I-10	5286261	220101143	29149478	10	8646										
OBSCN	84033	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	228561682	228561682	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0776699029126214	8	0.929330005145667	1.17866447278212	2.24399582318134	0.917356783061556	0.637186343068696	1	0	aagccaggccttgcttccttCcggctctcaggtctgaagag	11	13	2	2	novel		TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8369398d-9d6a-48dd-b20d-4e699ceddc1b	4b83e274-a5a1-430f-8ea8-70a4a64581c9	.	OBSCN-403	NM_001271223	exon106	c.C25224T	p.F8408F	TTCCTTCCGGCTC	.	345	83	339	0	.	0	0	0	0	0	T	228561682	C	T	228561682	2	4	39	1	0	0	0	0	0	0	0	1	10841	854	30	3		3	OBSCN	1	228561682	Silent	SNP	C	TCGA-OR-A5KX-01A-11D-A29I-10	8460539	228561682	20688939	11	8647										
KMO	8564	broad.mit.edu	37	chr1	241752063	241752063	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0776699029126214	8	0.929330005145667	1.17866447278212	2.24399582318134	0.917356783061556	0.637186343068696	1	0	cttacaggtttgtgtcttccTgtgttctcaagattgagaat	9	7	2	2	rs144089555	byfrequency	TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8369398d-9d6a-48dd-b20d-4e699ceddc1b	4b83e274-a5a1-430f-8ea8-70a4a64581c9	.	KMO-92	NM_003679	exon12	c.T1029G	p.P343P	TCTTCCTGTGTTC	.	99	4	110	2	T|0.999;G|0.001	0	0	0	0	0	G	241752063	T	G	241752063	2	3	39	1	0	0	0	0	0	0	0	1	8445	1567	55	5		5	KMO	1	241752063	Silent	SNP	T	TCGA-OR-A5KX-01A-11D-A29I-10	13190381	241752063	7498558	12	8648										
KIF26B	55083	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr1	245851927	245851927	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0776699029126214	8	0.929330005145667	1.17866447278212	2.24399582318134	0.917356783061556	0.637186343068696	1	0	gctgagcggggagctcccgcCggccatggggaagacggccc	18	14	0	2	novel		TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8369398d-9d6a-48dd-b20d-4e699ceddc1b	4b83e274-a5a1-430f-8ea8-70a4a64581c9	.	KIF26B-25	NM_018012	exon12	c.C5642T	p.P1881L	TCCCGCCGGCCAT	.	51	44	32	0	.	0	0	0	0	0	T	245851927	C	T	245851927	3	4	39	1	0	0	0	0	1	0	0	0	8316	652	23	1	5688	1	KIF26B	1	245851927	Missense_Mutation	SNP	C	TCGA-OR-A5KX-01A-11D-A29I-10	4099864	245851927	3398694	13	8649										
SH2D6	284948	bcgsc.ca	37	chr2	85662863	85662864	+	Frame_Shift_Ins	INS	-	-	GGCCGGGTCTTCAACAT													0.0776699029126214	8	0.929330005145667	1.17866447278212	2.24399582318134	0.917356783061556	0.637186343068696	1	0	ccctggcagtgcttctccgaINSggccgggtcttcaacattcc					novel		TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8369398d-9d6a-48dd-b20d-4e699ceddc1b	4b83e274-a5a1-430f-8ea8-70a4a64581c9	.	SH2D6-226	NM_198482	exon3	c.327_328insGGCCGGGTCTTCAACAT	p.R109fs	TCTCCGAGGCCGG	.	59	6	110	0	.	0	0	0	0	0	GGCCGGGTCTTCAACAT	85662864	-	GGCCGGGTCTTCAACAT	85662863	7	5	39	1	0	1	1	0	0	0	0	0	14273	291	11	0	337	0	SH2D6	2	85662863	Frame_Shift_Ins	INS	-	TCGA-OR-A5KX-01A-11D-A29I-10		85662863	157536510	14	8650										
MARCH4	57574	broad.mit.edu;bcgsc.ca	37	chr2	217124172	217124172	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0776699029126214	8	0.929330005145667	1.17866447278212	2.24399582318134	0.917356783061556	0.637186343068696	1	0	cagagggcctgaggggtggcCggcagcctgggcagggccct	20	12	0	2	novel		TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8369398d-9d6a-48dd-b20d-4e699ceddc1b	4b83e274-a5a1-430f-8ea8-70a4a64581c9	.	MARCH4-69	NM_020814	exon4	c.G1096A	p.G366S	GGTGGCCGGCAGC	.	199	7	119	1	.	0	0	0	0	0	T	217124172	C	T	217124172	3	4	39	1	0	0	0	0	1	0	0	0	9331	652	23	1	140	1	MARCH4	2	217124172	Missense_Mutation	SNP	C	TCGA-OR-A5KX-01A-11D-A29I-10	131461309	217124172	26075201	15	8651										
ACSL3	2181	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	223789243	223789243	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0776699029126214	8	0.929330005145667	1.17866447278212	2.24399582318134	0.917356783061556	0.637186343068696	1	0	tgagtagttttcaacgtaatCtgtttattctggcctataat	7	6	3	1	novel		TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8369398d-9d6a-48dd-b20d-4e699ceddc1b	4b83e274-a5a1-430f-8ea8-70a4a64581c9	.	ACSL3-228	NM_203372	exon10	c.C1222G	p.L408V	CGTAATCTGTTTA	.	381	83	197	0	.	7	7	0	0	0	G	223789243	C	G	223789243	3	3	39	1	0	0	0	0	1	0	0	0	178	912	32	3	1252	3	ACSL3	2	223789243	Missense_Mutation	SNP	C	TCGA-OR-A5KX-01A-11D-A29I-10	6665071	223789243	19410130	16	8652										
MFF	56947	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	228195447	228195447	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0776699029126214	8	0.929330005145667	1.17866447278212	2.24399582318134	0.917356783061556	0.637186343068696	1	0	ggcattagtcagcgaatgagGgtcccagaaaagttaaaagt	12	6	1	2	novel		TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8369398d-9d6a-48dd-b20d-4e699ceddc1b	4b83e274-a5a1-430f-8ea8-70a4a64581c9	.	MFF-153	NM_020194	exon4	c.G144A	p.R48R	AATGAGGGTCCCA	.	420	69	319	0	.	75	59	16	0	0	A	228195447	G	A	228195447	2	1	39	1	0	0	0	0	0	0	0	1	9547	1223	43	3		3	MFF	2	228195447	Silent	SNP	G	TCGA-OR-A5KX-01A-11D-A29I-10	4406204	228195447	15003926	17	8653										
CHCHD4	131474	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr3	14154643	14154644	+	Frame_Shift_Del	DEL	CC	CC	-													0.0776699029126214	8	0.929330005145667	1.17866447278212	2.24399582318134	0.917356783061556	0.637186343068696	1	0	cacagggaccgctggccattCccccaaggcatgggcagttc					novel		TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10	CC	CC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8369398d-9d6a-48dd-b20d-4e699ceddc1b	4b83e274-a5a1-430f-8ea8-70a4a64581c9	.	CHCHD4-90	NM_144636	exon4	c.211_212del	p.71_71del	GCCATTCCCCCAA	.	228	0	231	0	.	0	0	0	0	0	-	14154644	CC	-	14154643	7	5	39	1	0	1	0	1	0	0	0	0	3324	855	30	0	259	0	CHCHD4	3	14154643	Frame_Shift_Del	DEL	CC	TCGA-OR-A5KX-01A-11D-A29I-10		14154643	183867787	18	8654										
DCP1A	55802	broad.mit.edu;bcgsc.ca	37	chr3	53326623	53326623	+	Frame_Shift_Del	DEL	C	C	-													0.0776699029126214	8	0.929330005145667	1.17866447278212	2.24399582318134	0.917356783061556	0.637186343068696	1	0	tagcaccggggtggtgatttCaggctggactgaatggtggg					novel		TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8369398d-9d6a-48dd-b20d-4e699ceddc1b	4b83e274-a5a1-430f-8ea8-70a4a64581c9	.	DCP1A-90	NM_018403	exon7	c.859delG	p.E287fs	TGATTTCAGGCTG	.	342	36	232	0	.	0	0	0	0	0	-	53326623	C	-	53326623	7	5	39	1	0	1	0	1	0	0	0	0	4304	835	29	0	905	0	DCP1A	3	53326623	Frame_Shift_Del	DEL	C	TCGA-OR-A5KX-01A-11D-A29I-10	39171980	53326623	144695807	19	8655	95	5								
DCP1A	55802	broad.mit.edu;bcgsc.ca	37	chr3	53326625	53326625	+	Frame_Shift_Del	DEL	G	G	-													0.0776699029126214	8	0.929330005145667	1.17866447278212	2.24399582318134	0.917356783061556	0.637186343068696	1	0	gcaccggggtggtgatttcaGgctggactgaatggtgggca					novel		TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8369398d-9d6a-48dd-b20d-4e699ceddc1b	4b83e274-a5a1-430f-8ea8-70a4a64581c9	.	DCP1A-90	NM_018403	exon7	c.857delC	p.P286fs	ATTTCAGGCTGGA	.	314	36	221	0	.	0	0	0	0	0	-	53326625	G	-	53326625	7	5	39	1	0	1	0	1	0	0	0	0	4304	1000	35	0	907	0	DCP1A	3	53326625	Frame_Shift_Del	DEL	G	TCGA-OR-A5KX-01A-11D-A29I-10	2	53326625	144695805	20	8656	95	5								
DCP1A	55802	broad.mit.edu;bcgsc.ca	37	chr3	53326628	53326628	+	Frame_Shift_Del	DEL	T	T	-													0.0776699029126214	8	0.929330005145667	1.17866447278212	2.24399582318134	0.917356783061556	0.637186343068696	1	0	ccggggtggtgatttcaggcTggactgaatggtgggcagca					novel		TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8369398d-9d6a-48dd-b20d-4e699ceddc1b	4b83e274-a5a1-430f-8ea8-70a4a64581c9	.	DCP1A-90	NM_018403	exon7	c.854delA	p.Q285fs	TCAGGCTGGACTG	.	306	36	214	0	.	0	0	0	0	0	-	53326628	T	-	53326628	7	5	39	1	0	1	0	1	0	0	0	0	4304	1580	55	0	910	0	DCP1A	3	53326628	Frame_Shift_Del	DEL	T	TCGA-OR-A5KX-01A-11D-A29I-10	3	53326628	144695802	21	8657	95	5								
DCP1A	55802	broad.mit.edu;bcgsc.ca	37	chr3	53326631	53326632	+	Frame_Shift_Ins	INS	-	-	GG													0.0776699029126214	8	0.929330005145667	1.17866447278212	2.24399582318134	0.917356783061556	0.637186343068696	1	0	ggtggtgatttcaggctggaINSctgaatggtgggcagcagaa					novel		TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8369398d-9d6a-48dd-b20d-4e699ceddc1b	4b83e274-a5a1-430f-8ea8-70a4a64581c9	.	DCP1A-90	NM_018403	exon7	c.851_852insCC	p.V284fs	GGCTGGACTGAAT	.	294	0	201	0	.	0	0	0	0	0	GG	53326632	-	GG	53326631	7	5	39	1	0	1	1	0	0	0	0	0	4304	275	10	0	913	0	DCP1A	3	53326631	Frame_Shift_Ins	INS	-	TCGA-OR-A5KX-01A-11D-A29I-10	3	53326631	144695799	22	8658	95	5								
DCP1A	55802	broad.mit.edu;bcgsc.ca	37	chr3	53326635	53326635	+	Frame_Shift_Del	DEL	A	A	-													0.0776699029126214	8	0.929330005145667	1.17866447278212	2.24399582318134	0.917356783061556	0.637186343068696	1	0	ggtgatttcaggctggactgAatggtgggcagcagaaggga					novel		TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8369398d-9d6a-48dd-b20d-4e699ceddc1b	4b83e274-a5a1-430f-8ea8-70a4a64581c9	.	DCP1A-90	NM_018403	exon7	c.847delT	p.S283fs	GGACTGAATGGTG	.	288	35	192	0	.	0	0	0	0	0	-	53326635	A	-	53326635	7	5	39	1	0	1	0	1	0	0	0	0	4304	246	9	0	917	0	DCP1A	3	53326635	Frame_Shift_Del	DEL	A	TCGA-OR-A5KX-01A-11D-A29I-10	4	53326635	144695795	23	8659	95	5								
LRIG1	26018	hgsc.bcm.edu	37	chr3	66550756	66550756	+	Missense_Mutation	SNP	G	G	C													0.0776699029126214	8	0.929330005145667	1.17866447278212	2.24399582318134	0.917356783061556	0.637186343068696	1	0	ggtcaccggctccagccgaaGcaaaagcagccagagaagga					rs1403625		TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8369398d-9d6a-48dd-b20d-4e699ceddc1b	4b83e274-a5a1-430f-8ea8-70a4a64581c9	.	LRIG1-230	NM_015541	exon1	c.C76G	p.L26V	GCCGAAGCAAAAG	.	6	6	0	0	G|0.237;C|0.763	0	0	0	0	0	C	66550756	G	C	66550756	3	2	39	1	0	0	0	0	1	0	0	0	8971	971	34	3	3281	3	LRIG1	3	66550756	Missense_Mutation	SNP	G	TCGA-OR-A5KX-01A-11D-A29I-10	13224121	66550756	131471674	24	8660	96	2								
LRIG1	26018	hgsc.bcm.edu	37	chr3	66550762	66550762	+	Missense_Mutation	SNP	G	G	C													0.0776699029126214	8	0.929330005145667	1.17866447278212	2.24399582318134	0.917356783061556	0.637186343068696	1	0	cggctccagccgaagcaaaaGcagccagagaaggagaaggc					rs1403626	byfrequency	TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8369398d-9d6a-48dd-b20d-4e699ceddc1b	4b83e274-a5a1-430f-8ea8-70a4a64581c9	.	LRIG1-230	NM_015541	exon1	c.C70G	p.L24V	GCAAAAGCAGCCA	.	7	7	0	0	G|0.252;C|0.748	0	0	0	0	0	C	66550762	G	C	66550762	3	2	39	1	0	0	0	0	1	0	0	0	8971	971	34	3	3287	3	LRIG1	3	66550762	Missense_Mutation	SNP	G	TCGA-OR-A5KX-01A-11D-A29I-10	6	66550762	131471668	25	8661	96	2								
CCDC54	84692	bcgsc.ca	37	chr3	107096547	107096547	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0776699029126214	8	0.929330005145667	1.17866447278212	2.24399582318134	0.917356783061556	0.637186343068696	1	0	ttaccacaaatgtaagattcGgcaccaagattcaactggat	7	9	1	2	rs709564	byfrequency	TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8369398d-9d6a-48dd-b20d-4e699ceddc1b	4b83e274-a5a1-430f-8ea8-70a4a64581c9	.	CCDC54-90	NM_032600	exon1	c.G113A	p.R38Q	AGATTCGGCACCA	.	161	6	160	0	G|0.632;A|0.368	0	0	0	0	0	A	107096547	G	A	107096547	3	1	39	1	0	0	0	0	1	0	0	0	2830	1116	39	1	115	1	CCDC54	3	107096547	Missense_Mutation	SNP	G	TCGA-OR-A5KX-01A-11D-A29I-10	40545785	107096547	90925883	26	8662										
PVRL3	25945	broad.mit.edu;bcgsc.ca	37	chr3	110831005	110831005	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0776699029126214	8	0.929330005145667	1.17866447278212	2.24399582318134	0.917356783061556	0.637186343068696	1	0	catgggagaagatacatggcAaaagttcacagactgttgca	11	7	1	3	novel		TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8369398d-9d6a-48dd-b20d-4e699ceddc1b	4b83e274-a5a1-430f-8ea8-70a4a64581c9	.	PVRL3-92	NM_001243286	exon2	c.A289G	p.K97E	CATGGCAAAAGTT	.	455	16	418	0	.	0	0	0	0	0	G	110831005	A	G	110831005	3	3	39	1	0	0	0	0	1	0	0	0	12876	131	5	4	295	4	PVRL3	3	110831005	Missense_Mutation	SNP	A	TCGA-OR-A5KX-01A-11D-A29I-10	3734458	110831005	87191425	27	8663										
H1FOO	132243	bcgsc.ca	37	chr3	129266431	129266431	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0776699029126214	8	0.929330005145667	1.17866447278212	2.24399582318134	0.917356783061556	0.637186343068696	1	0	acgtcctccgcttcaagtacCtgctgaagcaggcgctggcc	11	15	1	1	novel		TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8369398d-9d6a-48dd-b20d-4e699ceddc1b	4b83e274-a5a1-430f-8ea8-70a4a64581c9	.	H1FOO-91	NM_153833	exon2	c.C286A	p.L96M	AAGTACCTGCTGA	.	75	4	70	0	.	0	0	0	0	0	A	129266431	C	A	129266431	3	1	39	1	0	0	0	0	1	0	0	0	6943	680	24	3	292	3	H1FOO	3	129266431	Missense_Mutation	SNP	C	TCGA-OR-A5KX-01A-11D-A29I-10	18435426	129266431	68755999	28	8664										
SMC4	10051	broad.mit.edu;bcgsc.ca	37	chr3	160148531	160148531	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0776699029126214	8	0.929330005145667	1.17866447278212	2.24399582318134	0.917356783061556	0.637186343068696	1	0	aagaatacaaatgctgcagaGgtatgagttgctttgtattg	11	4	0	3	novel		TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8369398d-9d6a-48dd-b20d-4e699ceddc1b	4b83e274-a5a1-430f-8ea8-70a4a64581c9	.	SMC4-291	NM_005496	exon18	c.G2940C	p.E980D	TGCAGAGGTATGA	.	337	13	389	0	.	2	1	1	0	0	C	160148531	G	C	160148531	3	2	39	1	0	0	0	0	1	0	0	0	14820	1014	35	3	3010	3	SMC4	3	160148531	Missense_Mutation	SNP	G	TCGA-OR-A5KX-01A-11D-A29I-10	30882100	160148531	37873899	29	8665										
ATP10D	57205	bcgsc.ca	37	chr4	47578971	47578971	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0776699029126214	8	0.929330005145667	1.17866447278212	2.24399582318134	0.917356783061556	0.637186343068696	1	0	gcaactgcctgaactttacaGaagtggtcagaaatcagagg	11	8	2	4	rs16851681	byfrequency	TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8369398d-9d6a-48dd-b20d-4e699ceddc1b	4b83e274-a5a1-430f-8ea8-70a4a64581c9	.	ATP10D-93	NM_020453	exon19	c.G3548A	p.R1183K	TTTACAGAAGTGG	.	200	7	223	1	G|0.728;A|0.272	3	3	0	0	0	A	47578971	G	A	47578971	3	1	39	1	0	0	0	0	1	0	0	0	1119	942	33	3	3618	3	ATP10D	4	47578971	Missense_Mutation	SNP	G	TCGA-OR-A5KX-01A-11D-A29I-10		47578971	143575305	30	8666										
DSPP	1834	hgsc.bcm.edu	37	chr4	88537078	88537213	+	Frame_Shift_Del	DEL	TGACAGCAGCAATAGCAGTGACAGCAGCGATAGCAGCGACAGCAGCGACAGCAGCGATAGCAGTGACAGCAGCGATAGCAGTGACAGCAGTGACAGCAGCAATAGCAGTGACAGCAGTGACAGCAGCGACAGCAGT	TGACAGCAGCAATAGCAGTGACAGCAGCGATAGCAGCGACAGCAGCGACAGCAGCGATAGCAGTGACAGCAGCGATAGCAGTGACAGCAGTGACAGCAGCAATAGCAGTGACAGCAGTGACAGCAGCGACAGCAGT	-													0.0776699029126214	8	0.929330005145667	1.17866447278212	2.24399582318134	0.917356783061556	0.637186343068696	1	0	agtgaaagcagtgatagcagTgacagcagcaatagcagtga					novel		TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10	TGACAGCAGCAATAGCAGTGACAGCAGCGATAGCAGCGACAGCAGCGACAGCAGCGATAGCAGTGACAGCAGCGATAGCAGTGACAGCAGTGACAGCAGCAATAGCAGTGACAGCAGTGACAGCAGCGACAGCAGT	TGACAGCAGCAATAGCAGTGACAGCAGCGATAGCAGCGACAGCAGCGACAGCAGCGATAGCAGTGACAGCAGCGATAGCAGTGACAGCAGTGACAGCAGCAATAGCAGTGACAGCAGTGACAGCAGCGACAGCAGT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8369398d-9d6a-48dd-b20d-4e699ceddc1b	4b83e274-a5a1-430f-8ea8-70a4a64581c9	.	DSPP-90	NM_014208	exon5	c.3264_3399del	p.1088_1133del	TAGCAGTGACAGC	.	406	0	444	0	.	0	0	0	0	0	-	88537213	TGACAGCAGCAATAGCAGTGACAGCAGCGATAGCAGCGACAGCAGCGACAGCAGCGATAGCAGTGACAGCAGCGATAGCAGTGACAGCAGTGACAGCAGCAATAGCAGTGACAGCAGTGACAGCAGCGACAGCAGT	-	88537078	7	5	39	1	0	1	0	1	0	0	0	0	4793	1693	59	0	3278	0	DSPP	4	88537078	Frame_Shift_Del	DEL	TGACAGCAGCAATAGCAGTGACAGCAGCGATAGCAGCGACAGCAGCGACAGCAGCGATAGCAGTGACAGCAGCGATAGCAGTGACAGCAGTGACAGCAGCAATAGCAGTGACAGCAGTGACAGCAGCGACAGCAGT	TCGA-OR-A5KX-01A-11D-A29I-10	40958107	88537078	102617198	31	8667										
SLC45A2	51151	broad.mit.edu;bcgsc.ca	37	chr5	33944896	33944896	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0776699029126214	8	0.929330005145667	1.17866447278212	2.24399582318134	0.917356783061556	0.637186343068696	1	0	gaccaggatctgagccagctGcaccatgcatgtgagggtgg	15	10	1	2	novel		TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8369398d-9d6a-48dd-b20d-4e699ceddc1b	4b83e274-a5a1-430f-8ea8-70a4a64581c9	.	SLC45A2-93	NM_016180	exon7	c.C1450T	p.Q484X	CCAGCTGCACCAT	.	911	62	183	1	.	0	0	0	0	0	A	33944896	G	A	33944896	4	1	39	1	0	0	0	0	0	1	0	0	14676	1328	46	3	146	3	SLC45A2	5	33944896	Nonsense_Mutation	SNP	G	TCGA-OR-A5KX-01A-11D-A29I-10		33944896	146970364	32	8668										
ATP6AP1L	92270	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	81613911	81613911	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0776699029126214	8	0.929330005145667	1.17866447278212	2.24399582318134	0.917356783061556	0.637186343068696	1	0	tctgatcggcctggcaatgtCcctgatcctgctgctggtgt	12	12	1	2	novel		TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8369398d-9d6a-48dd-b20d-4e699ceddc1b	4b83e274-a5a1-430f-8ea8-70a4a64581c9	.	ATP6AP1L-90	NM_001017971	exon4	c.C467T	p.S156F	CAATGTCCCTGAT	.	217	95	204	1	.	0	0	0	0	0	T	81613911	C	T	81613911	3	4	39	1	0	0	0	0	1	0	0	0	1167	855	30	3	481	3	ATP6AP1L	5	81613911	Missense_Mutation	SNP	C	TCGA-OR-A5KX-01A-11D-A29I-10	47669015	81613911	99301349	33	8669										
RGMB	285704	broad.mit.edu	37	chr5	98128940	98128940	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0776699029126214	8	0.929330005145667	1.17866447278212	2.24399582318134	0.917356783061556	0.637186343068696	1	0	tatcgtggaaagggagagtgGccactatgtggagatgcacg	16	6	0	2	novel		TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8369398d-9d6a-48dd-b20d-4e699ceddc1b	4b83e274-a5a1-430f-8ea8-70a4a64581c9	.	.	NM_001012761	exon5	c.G920C	p.G307A	AGAGTGGCCACTA	.	250	7	257	0	.	5	5	0	0	0	C	98128940	G	C	98128940	3	2	39	1	0	0	0	0	1	0	0	0	13316	1203	42	3	934	3	RGMB	5	98128940	Missense_Mutation	SNP	G	TCGA-OR-A5KX-01A-11D-A29I-10	16515029	98128940	82786320	34	8670										
FBN2	2201	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	127728908	127728908	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0776699029126214	8	0.929330005145667	1.17866447278212	2.24399582318134	0.917356783061556	0.637186343068696	1	0	gagaaaagccattgcctccaGggatggggatgaagcctgtc	14	9	0	2	novel		TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8369398d-9d6a-48dd-b20d-4e699ceddc1b	4b83e274-a5a1-430f-8ea8-70a4a64581c9	.	FBN2-146	NM_001999	exon10	c.C1385A	p.P462H	CCTCCAGGGATGG	.	84	44	105	0	.	0	0	0	0	0	T	127728908	G	T	127728908	3	4	39	1	0	0	0	0	1	0	0	0	5722	1000	35	3	7577	3	FBN2	5	127728908	Missense_Mutation	SNP	G	TCGA-OR-A5KX-01A-11D-A29I-10	29599968	127728908	53186352	35	8671										
TTC1	7265	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	159491977	159491977	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0776699029126214	8	0.929330005145667	1.17866447278212	2.24399582318134	0.917356783061556	0.637186343068696	1	0	ggaacttggttctccgacctTttgggctctccacggaaaat	10	11	2	0	novel		TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8369398d-9d6a-48dd-b20d-4e699ceddc1b	4b83e274-a5a1-430f-8ea8-70a4a64581c9	.	TTC1-91	NM_003314	exon8	c.T784G	p.F262V	CGACCTTTTGGGC	.	56	34	62	0	.	102	49	53	0	0	G	159491977	T	G	159491977	3	3	39	1	0	0	0	0	1	0	0	0	16716	1841	64	5	810	5	TTC1	5	159491977	Missense_Mutation	SNP	T	TCGA-OR-A5KX-01A-11D-A29I-10	31763069	159491977	21423283	36	8672										
KIAA1244	57221	bcgsc.ca	37	chr6	138613011	138613011	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0776699029126214	8	0.929330005145667	1.17866447278212	2.24399582318134	0.917356783061556	0.637186343068696	1	0	gagtgtgagggctcgcccccCgagcacagcccggagcaggg	17	14	0	1	novel		TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8369398d-9d6a-48dd-b20d-4e699ceddc1b	4b83e274-a5a1-430f-8ea8-70a4a64581c9	.	KIAA1244-228	NM_020340	exon19	c.C3189A	p.P1063P	GCCCCCCGAGCAC	.	110	50	88	3	.	0	0	0	0	0	A	138613011	C	A	138613011	2	1	39	1	0	0	0	0	0	0	0	1	8238	639	23	2		2	KIAA1244	6	138613011	Silent	SNP	C	TCGA-OR-A5KX-01A-11D-A29I-10		138613011	32502056	37	8673										
USP42	84132	hgsc.bcm.edu	37	chr7	6193521	6193521	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0776699029126214	8	0.929330005145667	1.17866447278212	2.24399582318134	0.917356783061556	0.637186343068696	1	0	caagaaggctccgccgccccGcgatcccggcacccccgcta	10	21	0	1	rs61729726	byfrequency	TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8369398d-9d6a-48dd-b20d-4e699ceddc1b	4b83e274-a5a1-430f-8ea8-70a4a64581c9	.	USP42-659	NM_032172	exon15	c.G2336C	p.R779P	CGCCCCGCGATCC	.	8	6	3	0	G|0.456;C|0.544	0	0	0	0	0	C	6193521	G	C	6193521	3	2	39	1	0	0	0	0	1	0	0	0	17111	1087	38	2		2	USP42	7	6193521	Missense_Mutation	SNP	G	TCGA-OR-A5KX-01A-11D-A29I-10		6193521	152945142	38	8674										
GARS	2617	hgsc.bcm.edu	37	chr7	30634661	30634661	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0776699029126214	8	0.929330005145667	1.17866447278212	2.24399582318134	0.917356783061556	0.637186343068696	1	0	ccctcagcgcggcctcctgcCccccgatctccttgcccgcc	8	24	2	0	rs1049402	byfrequency	TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8369398d-9d6a-48dd-b20d-4e699ceddc1b	4b83e274-a5a1-430f-8ea8-70a4a64581c9	.	GARS-91	NM_002047	exon1	c.C124G	p.P42A	TCCTGCCCCCCGA	.	10	5	1	0	C|0.329;G|0.671	4	1	3	0	0	G	30634661	C	G	30634661	3	3	39	1	0	0	0	0	1	0	0	0	6262	623	22	3	126	3	GARS	7	30634661	Missense_Mutation	SNP	C	TCGA-OR-A5KX-01A-11D-A29I-10	24441140	30634661	128504002	39	8675										
LAT2	7462	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	73636002	73636002	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0776699029126214	8	0.929330005145667	1.17866447278212	2.24399582318134	0.917356783061556	0.637186343068696	1	0	ggagtattacaactgggggcGgttctcgaagcccccagaag	14	10	1	1	novel		TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8369398d-9d6a-48dd-b20d-4e699ceddc1b	4b83e274-a5a1-430f-8ea8-70a4a64581c9	.	LAT2-90	NM_032464	exon10	c.G368A	p.R123Q	GGGGGCGGTTCTC	.	72	13	68	0	.	1	1	0	0	0	A	73636002	G	A	73636002	3	1	39	1	0	0	0	0	1	0	0	0	8667	1116	39	1	398	1	LAT2	7	73636002	Missense_Mutation	SNP	G	TCGA-OR-A5KX-01A-11D-A29I-10	43001341	73636002	85502661	40	8676										
CACNA2D1	781	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr7	81591223	81591224	+	Frame_Shift_Del	DEL	CA	CA	-													0.0776699029126214	8	0.929330005145667	1.17866447278212	2.24399582318134	0.917356783061556	0.637186343068696	1	0	aaattacctggaacagtttcCacagtctaatacaccactga					novel		TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10	CA	CA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8369398d-9d6a-48dd-b20d-4e699ceddc1b	4b83e274-a5a1-430f-8ea8-70a4a64581c9	.	CACNA2D1-96	NM_000722	exon36	c.2952_2953del	p.984_985del	AGTTTCCACAGTC	.	71	22	69	0	.	0	0	0	0	0	-	81591224	CA	-	81591223	7	5	39	1	0	1	0	1	0	0	0	0	2554	603	21	0	338	0	CACNA2D1	7	81591223	Frame_Shift_Del	DEL	CA	TCGA-OR-A5KX-01A-11D-A29I-10	7955221	81591223	77547440	41	8677										
PUS7	54517	broad.mit.edu	37	chr7	105122864	105122864	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0776699029126214	8	0.929330005145667	1.17866447278212	2.24399582318134	0.917356783061556	0.637186343068696	1	0	tcatcaagcacttattcaggTgggcaagtctttgtgcagtt	10	8	4	0	novel		TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8369398d-9d6a-48dd-b20d-4e699ceddc1b	4b83e274-a5a1-430f-8ea8-70a4a64581c9	.	PUS7-90	NM_019042	exon8	c.A944C	p.H315P	TTCAGGTGGGCAA	.	28	3	33	1	.	1	1	0	0	0	G	105122864	T	G	105122864	3	3	39	1	0	0	0	0	1	0	0	0	12868	1696	59	5	1077	5	PUS7	7	105122864	Missense_Mutation	SNP	T	TCGA-OR-A5KX-01A-11D-A29I-10	23531641	105122864	54015799	42	8678										
CSGALNACT1	55790	bcgsc.ca	37	chr8	19263441	19263441	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0776699029126214	8	0.929330005145667	1.17866447278212	2.24399582318134	0.917356783061556	0.637186343068696	1	0	tactgctcgggggtcagctcGtccatgcagcgcttctcatg	12	13	2	0	rs35971700	byfrequency	TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8369398d-9d6a-48dd-b20d-4e699ceddc1b	4b83e274-a5a1-430f-8ea8-70a4a64581c9	.	CSGALNACT1-70	NM_018371	exon10	c.C1449T	p.D483D	CAGCTCGTCCATG	.	90	5	174	0	G|0.945;A|0.055	16	16	0	0	0	A	19263441	G	A	19263441	2	1	39	1	0	0	0	0	0	0	0	1	3944	1136	40	1		1	CSGALNACT1	8	19263441	Silent	SNP	G	TCGA-OR-A5KX-01A-11D-A29I-10		19263441	127100581	43	8679										
BIN3	55909	bcgsc.ca	37	chr8	22494440	22494440	+	Frame_Shift_Del	DEL	A	A	-													0.0776699029126214	8	0.929330005145667	1.17866447278212	2.24399582318134	0.917356783061556	0.637186343068696	1	0	ggggttgacactcactgctgAagttttccatactccctttc					novel		TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8369398d-9d6a-48dd-b20d-4e699ceddc1b	4b83e274-a5a1-430f-8ea8-70a4a64581c9	.	.	NM_018688	exon3	c.93delT	p.L31fs	CTGCTGAAGTTTT	.	91	12	148	0	.	0	0	0	0	0	-	22494440	A	-	22494440	7	5	39	1	0	1	0	1	0	0	0	0	1435	233	9	0	696	0	BIN3	8	22494440	Frame_Shift_Del	DEL	A	TCGA-OR-A5KX-01A-11D-A29I-10	3230999	22494440	123869582	44	8680	97	2								
BIN3	55909	bcgsc.ca	37	chr8	22494441	22494441	+	Missense_Mutation	SNP	A	A	T													0.0776699029126214	8	0.929330005145667	1.17866447278212	2.24399582318134	0.917356783061556	0.637186343068696	1	0	gggttgacactcactgctgaAgttttccatactccctttca					rs200762212	alternate_allele	TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8369398d-9d6a-48dd-b20d-4e699ceddc1b	4b83e274-a5a1-430f-8ea8-70a4a64581c9	.	.	NM_018688	exon3	c.T92A	p.L31H	TGCTGAAGTTTTC	.	90	12	145	0	A|0.999;G|0.001	0	0	0	0	0	T	22494441	A	T	22494441	3	4	39	1	0	0	0	0	1	0	0	0	1435	72	3	5	697	5	BIN3	8	22494441	Missense_Mutation	SNP	A	TCGA-OR-A5KX-01A-11D-A29I-10	1	22494441	123869581	45	8681	97	2								
BRF2	55290	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr8	37702542	37702542	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0776699029126214	8	0.929330005145667	1.17866447278212	2.24399582318134	0.917356783061556	0.637186343068696	1	0	cgggcaagggaacatgaaagCcgatctgcaggctgcagcga	15	10	1	1	novel		TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8369398d-9d6a-48dd-b20d-4e699ceddc1b	4b83e274-a5a1-430f-8ea8-70a4a64581c9	.	BRF2-90	NM_018310	exon4	c.G726A	p.R242R	TGAAAGCCGATCT	.	703	51	137	0	.	111	97	14	0	0	T	37702542	C	T	37702542	2	4	39	1	0	0	0	0	0	0	0	1	1514	726	26	3		3	BRF2	8	37702542	Silent	SNP	C	TCGA-OR-A5KX-01A-11D-A29I-10	15208101	37702542	108661480	46	8682										
PABPC1	26986	broad.mit.edu	37	chr8	101724606	101724606	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0776699029126214	8	0.929330005145667	1.17866447278212	2.24399582318134	0.917356783061556	0.637186343068696	1	0	ttacctttgcactagtgattGtaccaaatggagaaaactct	7	8	1	2	rs202060459		TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8369398d-9d6a-48dd-b20d-4e699ceddc1b	4b83e274-a5a1-430f-8ea8-70a4a64581c9	.	PABPC1-68	NM_002568	exon7	c.C956T	p.T319I	GTGATTGTACCAA	.	147	5	147	1	.	269	269	0	0	0	A	101724606	G	A	101724606	3	1	39	1	0	0	0	0	1	0	0	0	11392	1377	48	3	986	3	PABPC1	8	101724606	Missense_Mutation	SNP	G	TCGA-OR-A5KX-01A-11D-A29I-10	64022064	101724606	44639416	47	8683										
MAL2	114569	hgsc.bcm.edu	37	chr8	120220776	120220776	+	Splice_Site	DEL	G	G	-													0.0776699029126214	8	0.929330005145667	1.17866447278212	2.24399582318134	0.917356783061556	0.637186343068696	1	0	cgtgtccttcccgccgccccGgggtcaccctgcccgccggc					novel		TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8369398d-9d6a-48dd-b20d-4e699ceddc1b	4b83e274-a5a1-430f-8ea8-70a4a64581c9	.	.	NM_052886	exon1	c.64+1G>-	.	CGCCCCGGGGTCA	.	11	11	0	0	.	0	0	0	0	0	-	120220776	G	-	120220776	8	5	39	1	0	1	0	1	0	0	1	0	9228	1116	39	0	67	0	MAL2	8	120220776	Splice_Site	DEL	G	TCGA-OR-A5KX-01A-11D-A29I-10	18496170	120220776	26143246	48	8684										
ENPP2	5168	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr8	120581567	120581567	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0776699029126214	8	0.929330005145667	1.17866447278212	2.24399582318134	0.917356783061556	0.637186343068696	1	0	gagaaacacggacatcaggcCggacgcaactggtcagatgg	14	10	2	2	novel		TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8369398d-9d6a-48dd-b20d-4e699ceddc1b	4b83e274-a5a1-430f-8ea8-70a4a64581c9	.	ENPP2-292	NM_006209	exon22	c.G2117A	p.R706Q	TCAGGCCGGACGC	.	141	10	135	0	.	151	151	0	0	0	T	120581567	C	T	120581567	3	4	39	1	0	0	0	0	1	0	0	0	5143	652	23	1	650	1	ENPP2	8	120581567	Missense_Mutation	SNP	C	TCGA-OR-A5KX-01A-11D-A29I-10	360791	120581567	25782455	49	8685										
GSDMC	56169	bcgsc.ca	37	chr8	130760774	130760774	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0776699029126214	8	0.929330005145667	1.17866447278212	2.24399582318134	0.917356783061556	0.637186343068696	1	0	tcagccagctgctgcagcaaCgagagagtcccatagagggc	13	12	1	2	rs4733559	byfrequency	TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8369398d-9d6a-48dd-b20d-4e699ceddc1b	4b83e274-a5a1-430f-8ea8-70a4a64581c9	.	GSDMC-93	NM_031415	exon14	c.G1500A	p.S500S	CAGCAACGAGAGA	.	163	7	202	0	C|0.868;T|0.132	0	0	0	0	0	T	130760774	C	T	130760774	2	4	39	1	0	0	0	0	0	0	0	1	6839	523	19	1		1	GSDMC	8	130760774	Silent	SNP	C	TCGA-OR-A5KX-01A-11D-A29I-10	10179207	130760774	15603248	50	8686										
SCRIB	23513	hgsc.bcm.edu	37	chr8	144874554	144874554	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0776699029126214	8	0.929330005145667	1.17866447278212	2.24399582318134	0.917356783061556	0.637186343068696	1	0	ggggcgccacctcccaggggTgggggggacgccgggctctg	21	13	1	0	rs6991873		TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8369398d-9d6a-48dd-b20d-4e699ceddc1b	4b83e274-a5a1-430f-8ea8-70a4a64581c9	.	SCRIB-228	NM_015356	exon32	c.A4350G	p.P1450P	CAGGGGTGGGGGG	.	4	4	0	0	T|0.010;C|0.990	13	0	13	0	0	C	144874554	T	C	144874554	2	2	39	1	0	0	0	0	0	0	0	1	13972	1683	59	4		4	SCRIB	8	144874554	Silent	SNP	T	TCGA-OR-A5KX-01A-11D-A29I-10	14113780	144874554	1489468	51	8687										
PLEC	5339	hgsc.bcm.edu	37	chr8	144999417	144999417	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0776699029126214	8	0.929330005145667	1.17866447278212	2.24399582318134	0.917356783061556	0.637186343068696	1	0	agggccacctgtacctgccgCgctcgctccacctcggcctg	11	19	0	0	rs55836855	byfrequency	TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8369398d-9d6a-48dd-b20d-4e699ceddc1b	4b83e274-a5a1-430f-8ea8-70a4a64581c9	.	PLEC-141	NM_201380	exon31	c.G5091A	p.A1697A	CTGCCGCGCTCGC	.	5	5	0	0	C|0.731;T|0.269	0	0	0	0	0	T	144999417	C	T	144999417	2	4	39	1	0	0	0	0	0	0	0	1	12081	755	27	1		1	PLEC	8	144999417	Silent	SNP	C	TCGA-OR-A5KX-01A-11D-A29I-10	124863	144999417	1364605	52	8688										
UNC13B	10497	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr9	35375173	35375173	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0776699029126214	8	0.929330005145667	1.17866447278212	2.24399582318134	0.917356783061556	0.637186343068696	1	0	cacttctgcaatggctacacGcacttctcttaaggacgaag	8	12	2	0	novel		TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8369398d-9d6a-48dd-b20d-4e699ceddc1b	4b83e274-a5a1-430f-8ea8-70a4a64581c9	.	UNC13B-157	NM_006377	exon13	c.G1343A	p.R448H	CTACACGCACTTC	.	187	82	222	0	.	2	1	1	0	0	A	35375173	G	A	35375173	3	1	39	1	0	0	0	0	1	0	0	0	17023	1087	38	1	1393	1	UNC13B	9	35375173	Missense_Mutation	SNP	G	TCGA-OR-A5KX-01A-11D-A29I-10		35375173	105838258	53	8689										
TGFBR1	7046	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr9	101894969	101894969	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0776699029126214	8	0.929330005145667	1.17866447278212	2.24399582318134	0.917356783061556	0.637186343068696	1	0	cgcccttttatttcagagggTactacgttgaaagacttaat	8	8	1	3	novel		TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8369398d-9d6a-48dd-b20d-4e699ceddc1b	4b83e274-a5a1-430f-8ea8-70a4a64581c9	.	TGFBR1-954	NM_004612	exon3	c.T522A	p.G174G	AGAGGGTACTACG	.	122	46	146	1	.	0	0	0	0	0	A	101894969	T	A	101894969	2	1	39	1	0	0	0	0	0	0	0	1	15858	1625	57	5		5	TGFBR1	9	101894969	Silent	SNP	T	TCGA-OR-A5KX-01A-11D-A29I-10	66519796	101894969	39318462	54	8690										
NOXA1	10811	hgsc.bcm.edu	37	chr9	140317999	140317999	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0776699029126214	8	0.929330005145667	1.17866447278212	2.24399582318134	0.917356783061556	0.637186343068696	1	0	gccatggcctctctgggggaCctggtgcgcgcctggcacct	15	15	1	0	rs112864733		TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8369398d-9d6a-48dd-b20d-4e699ceddc1b	4b83e274-a5a1-430f-8ea8-70a4a64581c9	.	NOXA1-90	NM_006647	exon1	c.C18G	p.D6E	GGGGGACCTGGTG	.	8	4	0	0	C|0.934;G|0.066	0	0	0	0	0	G	140317999	C	G	140317999	3	3	39	1	0	0	0	0	1	0	0	0	10589	506	18	3	20	3	NOXA1	9	140317999	Missense_Mutation	SNP	C	TCGA-OR-A5KX-01A-11D-A29I-10	38423030	140317999	895432	55	8691										
C10orf111	221060	bcgsc.ca	37	chr10	15138615	15138615	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0776699029126214	8	0.929330005145667	1.17866447278212	2.24399582318134	0.917356783061556	0.637186343068696	1	0	gcagcgactccgatggtagcCtgagtctccattgcttggag	13	11	1	1	rs7896053	byfrequency	TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8369398d-9d6a-48dd-b20d-4e699ceddc1b	4b83e274-a5a1-430f-8ea8-70a4a64581c9	.	C10orf111-90	NM_153244	exon2	c.G209A	p.R70K	GGTAGCCTGAGTC	.	182	6	208	2	C|0.740;T|0.260	0	0	0	0	0	T	15138615	C	T	15138615	3	4	39	1	0	0	0	0	1	0	0	0	1587	681	24	3	262	3	C10orf111	10	15138615	Missense_Mutation	SNP	C	TCGA-OR-A5KX-01A-11D-A29I-10		15138615	120396132	56	8692										
SVIL	6840	bcgsc.ca	37	chr10	29747417	29747417	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0776699029126214	8	0.929330005145667	1.17866447278212	2.24399582318134	0.917356783061556	0.637186343068696	1	0	ttcagaggatcgaccccctcCgggagtggcctggccaggag	15	13	1	1	rs1887465	byfrequency	TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8369398d-9d6a-48dd-b20d-4e699ceddc1b	4b83e274-a5a1-430f-8ea8-70a4a64581c9	.	SVIL-96	NM_021738	exon37	c.G6504A	p.P2168P	CCCCTCCGGGAGT	.	115	5	128	0	C|0.733;T|0.267	14	14	0	0	0	T	29747417	C	T	29747417	2	4	39	1	0	0	0	0	0	0	0	1	15458	639	23	1		1	SVIL	10	29747417	Silent	SNP	C	TCGA-OR-A5KX-01A-11D-A29I-10	14608802	29747417	105787330	57	8693										
KCNJ11	3767	bcgsc.ca	37	chr11	17408831	17408831	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0776699029126214	8	0.929330005145667	1.17866447278212	2.24399582318134	0.917356783061556	0.637186343068696	1	0	gtgcaggtcgctgggtgccaGgtcgtagagtgggctgttgg	20	7	0	1	rs1800467	byfrequency	TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8369398d-9d6a-48dd-b20d-4e699ceddc1b	4b83e274-a5a1-430f-8ea8-70a4a64581c9	.	KCNJ11-91	NM_000525	exon1	c.C808G	p.L270V	GTGCCAGGTCGTA	.	237	8	216	1	G|0.734;C|0.266	0	0	0	0	0	C	17408831	G	C	17408831	3	2	39	1	0	0	0	0	1	0	0	0	8066	991	35	3	368	3	KCNJ11	11	17408831	Missense_Mutation	SNP	G	TCGA-OR-A5KX-01A-11D-A29I-10		17408831	117597685	58	8694										
NUP160	23279	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr11	47869867	47869867	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0776699029126214	8	0.929330005145667	1.17866447278212	2.24399582318134	0.917356783061556	0.637186343068696	1	0	ttccagggctcccgccgccgCcatcttcccgccgtcgccgc	10	22	1	0	novel		TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8369398d-9d6a-48dd-b20d-4e699ceddc1b	4b83e274-a5a1-430f-8ea8-70a4a64581c9	.	NUP160-209	NM_015231	exon1	c.G106A	p.A36T	CCGCCGCCATCTT	.	88	6	52	0	.	0	0	0	0	0	T	47869867	C	T	47869867	3	4	39	1	0	0	0	0	1	0	0	0	10786	739	26	3	4348	3	NUP160	11	47869867	Missense_Mutation	SNP	C	TCGA-OR-A5KX-01A-11D-A29I-10	30461036	47869867	87136649	59	8695										
EML3	256364	bcgsc.ca	37	chr11	62378802	62378802	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0776699029126214	8	0.929330005145667	1.17866447278212	2.24399582318134	0.917356783061556	0.637186343068696	1	0	tgcacgtgggtggcagtcctGggggggctgcaagactgctg	19	9	0	1	novel		TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8369398d-9d6a-48dd-b20d-4e699ceddc1b	4b83e274-a5a1-430f-8ea8-70a4a64581c9	.	EML3-91	NM_153265	exon3	c.C209G	p.P70R	AGTCCTGGGGGGG	.	81	4	100	0	.	2	2	0	0	0	C	62378802	G	C	62378802	3	2	39	1	0	0	0	0	1	0	0	0	5111	1348	47	3	2561	3	EML3	11	62378802	Missense_Mutation	SNP	G	TCGA-OR-A5KX-01A-11D-A29I-10	14508935	62378802	72627714	60	8696										
GPR137	56834	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr11	64056752	64056777	+	Frame_Shift_Del	DEL	CCCAGGATCCTGGGGGTCGTGGCTAC	CCCAGGATCCTGGGGGTCGTGGCTAC	-													0.0776699029126214	8	0.929330005145667	1.17866447278212	2.24399582318134	0.917356783061556	0.637186343068696	1	0	agtttgtctgccgcttcttgCccaggatcctgggggtcgtg					novel		TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10	CCCAGGATCCTGGGGGTCGTGGCTAC	CCCAGGATCCTGGGGGTCGTGGCTAC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8369398d-9d6a-48dd-b20d-4e699ceddc1b	4b83e274-a5a1-430f-8ea8-70a4a64581c9	.	GPR137-68	NM_001170726	exon9	c.1343_1368del	p.448_456del	TTCTTGCCCAGGA	.	109	17	167	0	.	0	0	0	0	0	-	64056777	CCCAGGATCCTGGGGGTCGTGGCTAC	-	64056752	7	5	39	1	0	1	0	1	0	0	0	0	6665	739	26	0	1483	0	GPR137	11	64056752	Frame_Shift_Del	DEL	CCCAGGATCCTGGGGGTCGTGGCTAC	TCGA-OR-A5KX-01A-11D-A29I-10	1677950	64056752	70949764	61	8697										
FADD	8772	broad.mit.edu;bcgsc.ca	37	chr11	70052536	70052536	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0776699029126214	8	0.929330005145667	1.17866447278212	2.24399582318134	0.917356783061556	0.637186343068696	1	0	caggagtggggccatgtcccCgatgtcatggaactcagacg	14	11	2	1	novel		TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8369398d-9d6a-48dd-b20d-4e699ceddc1b	4b83e274-a5a1-430f-8ea8-70a4a64581c9	.	FADD-660	NM_003824	exon2	c.C584T	p.P195L	TGTCCCCGATGTC	.	123	56	153	2	.	38	18	20	0	0	T	70052536	C	T	70052536	3	4	39	1	0	0	0	0	1	0	0	0	5380	652	23	1	590	1	FADD	11	70052536	Missense_Mutation	SNP	C	TCGA-OR-A5KX-01A-11D-A29I-10	5995784	70052536	64953980	62	8698										
NOP2	4839	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	6672532	6672532	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0776699029126214	8	0.929330005145667	1.17866447278212	2.24399582318134	0.917356783061556	0.637186343068696	1	0	ccaagcaggaagtctccataGgagtagtaaatggccagatc	11	9	1	1	novel		TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8369398d-9d6a-48dd-b20d-4e699ceddc1b	4b83e274-a5a1-430f-8ea8-70a4a64581c9	.	NOP2-92	NM_001258309	exon9	c.C936T	p.S312S	TCCATAGGAGTAG	.	77	40	84	0	.	5	2	3	0	0	A	6672532	G	A	6672532	2	1	39	1	0	0	0	0	0	0	0	1	10567	987	35	3		3	NOP2	12	6672532	Silent	SNP	G	TCGA-OR-A5KX-01A-11D-A29I-10		6672532	127179363	63	8699										
KRT6A	3853	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	52882329	52882329	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0776699029126214	8	0.929330005145667	1.17866447278212	2.24399582318134	0.917356783061556	0.637186343068696	1	0	aatggcggcctgcaggttggCgcactggaagaggaaaggaa	17	7	0	1	novel		TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8369398d-9d6a-48dd-b20d-4e699ceddc1b	4b83e274-a5a1-430f-8ea8-70a4a64581c9	.	KRT6A-27	NM_005554	exon7	c.G1207A	p.A403T	GGTTGGCGCACTG	.	296	160	302	0	.	0	0	0	0	0	T	52882329	C	T	52882329	3	4	39	1	0	0	0	0	1	0	0	0	8501	768	27	1	499	1	KRT6A	12	52882329	Missense_Mutation	SNP	C	TCGA-OR-A5KX-01A-11D-A29I-10	46209797	52882329	80969566	64	8700										
KRT77	374454	bcgsc.ca	37	chr12	53088567	53088567	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0776699029126214	8	0.929330005145667	1.17866447278212	2.24399582318134	0.917356783061556	0.637186343068696	1	0	tgatgtgagtctgcacctgaGacagctcctgcgaggcatgg	14	10	1	3	novel		TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8369398d-9d6a-48dd-b20d-4e699ceddc1b	4b83e274-a5a1-430f-8ea8-70a4a64581c9	.	KRT77-187	NM_175078	exon5	c.C923A	p.S308Y	ACCTGAGACAGCT	.	121	5	108	0	.	0	0	0	0	0	T	53088567	G	T	53088567	3	4	39	1	0	0	0	0	1	0	0	0	8511	942	33	3	833	3	KRT77	12	53088567	Missense_Mutation	SNP	G	TCGA-OR-A5KX-01A-11D-A29I-10	206238	53088567	80763328	65	8701										
STAB2	55576	bcgsc.ca	37	chr12	104100617	104100617	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0776699029126214	8	0.929330005145667	1.17866447278212	2.24399582318134	0.917356783061556	0.637186343068696	1	0	ggcccccaatgccagccctgCccagggaatgcccagaatgt	11	16	0	1	rs697212	byfrequency	TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8369398d-9d6a-48dd-b20d-4e699ceddc1b	4b83e274-a5a1-430f-8ea8-70a4a64581c9	.	STAB2-104	NM_017564	exon38	c.C4044T	p.C1348C	GCCCTGCCCAGGG	.	238	10	226	2	T|0.306;G|0.121	0	0	0	0	0	T	104100617	C	T	104100617	2	4	39	1	0	0	0	0	0	0	0	1	15275	747	26	3		3	STAB2	12	104100617	Silent	SNP	C	TCGA-OR-A5KX-01A-11D-A29I-10	51012050	104100617	29751278	66	8702										
N4BP2L2	10443	broad.mit.edu;bcgsc.ca	37	chr13	33017802	33017802	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0776699029126214	8	0.929330005145667	1.17866447278212	2.24399582318134	0.917356783061556	0.637186343068696	1	0	gcttttctaccttcatgccaGagcagtcatcagttgttaca	7	11	4	1	novel		TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8369398d-9d6a-48dd-b20d-4e699ceddc1b	4b83e274-a5a1-430f-8ea8-70a4a64581c9	.	N4BP2L2-68	NM_033111	exon7	c.C872G	p.S291C	ATGCCAGAGCAGT	.	249	9	280	0	.	0	0	0	0	0	C	33017802	G	C	33017802	3	2	39	1	0	0	0	0	1	0	0	0	10140	942	33	3	1398	3	N4BP2L2	13	33017802	Missense_Mutation	SNP	G	TCGA-OR-A5KX-01A-11D-A29I-10		33017802	82152076	67	8703										
ING1	3621	hgsc.bcm.edu	37	chr13	111368316	111368316	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0776699029126214	8	0.929330005145667	1.17866447278212	2.24399582318134	0.917356783061556	0.637186343068696	1	0	gacagtttcaggccgcatctCtgctgacccgagggtggggc	15	12	2	1	rs9555726	byfrequency	TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8369398d-9d6a-48dd-b20d-4e699ceddc1b	4b83e274-a5a1-430f-8ea8-70a4a64581c9	.	ING1-515	NM_005537	exon1	c.C526T	p.L176L	GCATCTCTGCTGA	.	4	4	0	0	C|0.372;T|0.628	0	0	0	0	0	T	111368316	C	T	111368316	2	4	39	1	0	0	0	0	0	0	0	1	7756	912	32	3		3	ING1	13	111368316	Silent	SNP	C	TCGA-OR-A5KX-01A-11D-A29I-10	78350514	111368316	3801562	68	8704										
NID2	22795	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr14	52520649	52520649	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0776699029126214	8	0.929330005145667	1.17866447278212	2.24399582318134	0.917356783061556	0.637186343068696	1	0	ttggtgtgaggatccaaggtGgaagattctgtttcaggata	14	4	2	2	novel		TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8369398d-9d6a-48dd-b20d-4e699ceddc1b	4b83e274-a5a1-430f-8ea8-70a4a64581c9	.	NID2-158	NM_007361	exon5	c.C1077T	p.S359S	CAAGGTGGAAGAT	.	109	41	100	0	.	0	0	0	0	0	A	52520649	G	A	52520649	2	1	39	1	0	0	0	0	0	0	0	1	10444	1335	47	3		3	NID2	14	52520649	Silent	SNP	G	TCGA-OR-A5KX-01A-11D-A29I-10		52520649	54828891	69	8705										
TTLL5	23093	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr14	76232414	76232414	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0776699029126214	8	0.929330005145667	1.17866447278212	2.24399582318134	0.917356783061556	0.637186343068696	1	0	ttcgtatttagtgattacccAaccagctgaaatgaatgtta	7	7	0	3	novel		TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8369398d-9d6a-48dd-b20d-4e699ceddc1b	4b83e274-a5a1-430f-8ea8-70a4a64581c9	.	TTLL5-92	NM_015072	exon20	c.A1718C	p.Q573P	TTACCCAACCAGC	.	62	29	77	0	.	0	0	0	0	0	C	76232414	A	C	76232414	3	2	39	1	0	0	0	0	1	0	0	0	16768	130	5	5	1792	5	TTLL5	14	76232414	Missense_Mutation	SNP	A	TCGA-OR-A5KX-01A-11D-A29I-10	23711765	76232414	31117126	70	8706										
SEL1L	6400	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr14	81961479	81961479	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0776699029126214	8	0.929330005145667	1.17866447278212	2.24399582318134	0.917356783061556	0.637186343068696	1	0	aggtgcagttgtccaagaccAacctgaaaatgatcacaaac	8	10	1	3	novel		TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8369398d-9d6a-48dd-b20d-4e699ceddc1b	4b83e274-a5a1-430f-8ea8-70a4a64581c9	.	SEL1L-227	NM_005065	exon11	c.T1131G	p.V377V	AAGACCAACCTGA	.	110	21	168	0	.	0	0	0	0	0	C	81961479	A	C	81961479	2	2	39	1	0	0	0	0	0	0	0	1	14045	117	5	5		5	SEL1L	14	81961479	Silent	SNP	A	TCGA-OR-A5KX-01A-11D-A29I-10	5729065	81961479	25388061	71	8707										
AHNAK2	113146	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr14	105407448	105407448	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0776699029126214	8	0.929330005145667	1.17866447278212	2.24399582318134	0.917356783061556	0.637186343068696	1	0	cagggagagagaatagaagaTtcaaagtgaggaccagtgag	15	4	1	6	novel		TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8369398d-9d6a-48dd-b20d-4e699ceddc1b	4b83e274-a5a1-430f-8ea8-70a4a64581c9	.	AHNAK2-47	NM_138420	exon7	c.A14340G	p.E4780E	AGAAGATTCAAAG	.	252	84	143	0	.	0	0	0	0	0	C	105407448	T	C	105407448	2	2	39	1	0	0	0	0	0	0	0	1	415	1490	52	4		4	AHNAK2	14	105407448	Silent	SNP	T	TCGA-OR-A5KX-01A-11D-A29I-10	23445969	105407448	1942092	72	8708										
PCSK6	5046	bcgsc.ca	37	chr15	101922323	101922323	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0776699029126214	8	0.929330005145667	1.17866447278212	2.24399582318134	0.917356783061556	0.637186343068696	1	0	ctcttgtccgaggcggccacAcacatgtgctgcgatggcac	12	14	1	0	rs1058260	byfrequency	TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8369398d-9d6a-48dd-b20d-4e699ceddc1b	4b83e274-a5a1-430f-8ea8-70a4a64581c9	.	PCSK6-46	.	.	.	.	GGCCACACACATG	.	93	5	123	0	A|0.764;G|0.236	11	11	0	0	0	G	101922323	A	G	101922323	2	3	39	1	0	0	0	0	0	0	0	1	11633	157	6	4		4	PCSK6	15	101922323	Silent	SNP	A	TCGA-OR-A5KX-01A-11D-A29I-10		101922323	609069	73	8709										
CLCN7	1186	bcgsc.ca	37	chr16	1500501	1500501	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0776699029126214	8	0.929330005145667	1.17866447278212	2.24399582318134	0.917356783061556	0.637186343068696	1	0	cctccggccccactcaccgcCgcccccgtgaggtaggacag	11	20	1	1	rs117461525	byfrequency	TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8369398d-9d6a-48dd-b20d-4e699ceddc1b	4b83e274-a5a1-430f-8ea8-70a4a64581c9	.	CLCN7-92	NM_001287	exon17	c.G1614A	p.A538A	CACCGCCGCCCCC	.	64	4	67	0	C|0.940;T|0.060	1	1	0	0	0	T	1500501	C	T	1500501	2	4	39	1	0	0	0	0	0	0	0	1	3474	639	23	1		1	CLCN7	16	1500501	Silent	SNP	C	TCGA-OR-A5KX-01A-11D-A29I-10		1500501	88854252	74	8710										
CLCN7	1186	bcgsc.ca	37	chr16	1502857	1502857	+	Missense_Mutation	SNP	C	C	T													0.0776699029126214	8	0.929330005145667	1.17866447278212	2.24399582318134	0.917356783061556	0.637186343068696	1	0	cgtgacggcggccaccagcaCggcctcaatcacctgcaggc					rs12926089	byfrequency	TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8369398d-9d6a-48dd-b20d-4e699ceddc1b	4b83e274-a5a1-430f-8ea8-70a4a64581c9	.	CLCN7-92	NM_001287	exon15	c.G1252A	p.V418M	CCAGCACGGCCTC	.	189	9	249	3	C|0.889;T|0.111	4	4	0	0	0	T	1502857	C	T	1502857	3	4	39	1	0	0	0	0	1	0	0	0	3474	536	19	1	1209	1	CLCN7	16	1502857	Missense_Mutation	SNP	C	TCGA-OR-A5KX-01A-11D-A29I-10	2356	1502857	88851896	75	8711	98	2								
CLCN7	1186	bcgsc.ca	37	chr16	1502864	1502864	+	Silent	SNP	A	A	G													0.0776699029126214	8	0.929330005145667	1.17866447278212	2.24399582318134	0.917356783061556	0.637186343068696	1	0	gcggccaccagcacggcctcAatcacctgcaggcagggccg					rs12926669	byfrequency	TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8369398d-9d6a-48dd-b20d-4e699ceddc1b	4b83e274-a5a1-430f-8ea8-70a4a64581c9	.	CLCN7-92	NM_001287	exon15	c.T1245C	p.I415I	GGCCTCAATCACC	.	192	8	256	2	A|0.912;G|0.088	5	5	0	0	0	G	1502864	A	G	1502864	2	3	39	1	0	0	0	0	0	0	0	1	3474	126	5	4		4	CLCN7	16	1502864	Silent	SNP	A	TCGA-OR-A5KX-01A-11D-A29I-10	7	1502864	88851889	76	8712	98	2								
ERI2	112479	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr16	20810279	20810279	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0776699029126214	8	0.929330005145667	1.17866447278212	2.24399582318134	0.917356783061556	0.637186343068696	1	0	tttattatatttttaggctcCttattatatatgctgggacc	6	6	0	0	novel		TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8369398d-9d6a-48dd-b20d-4e699ceddc1b	4b83e274-a5a1-430f-8ea8-70a4a64581c9	.	ERI2-153	NM_001142725	exon9	c.G843A	p.K281K	AGGCTCCTTATTA	.	62	8	47	0	.	2	1	1	0	0	T	20810279	C	T	20810279	2	4	39	1	0	0	0	0	0	0	0	1	5241	680	24	3		3	ERI2	16	20810279	Silent	SNP	C	TCGA-OR-A5KX-01A-11D-A29I-10	19307415	20810279	69544474	77	8713										
CES3	23491	bcgsc.ca	37	chr16	67006838	67006838	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0776699029126214	8	0.929330005145667	1.17866447278212	2.24399582318134	0.917356783061556	0.637186343068696	1	0	gagatcaacccagtgccacgGgccggacagaagttcaggga	14	11	2	2	rs3848289	byfrequency	TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8369398d-9d6a-48dd-b20d-4e699ceddc1b	4b83e274-a5a1-430f-8ea8-70a4a64581c9	.	CES3-517	NM_024922	exon13	c.G1602A	p.R534R	GCCACGGGCCGGA	.	221	7	214	0	G|0.955;A|0.045	0	0	0	0	0	A	67006838	G	A	67006838	2	1	39	1	0	0	0	0	0	0	0	1	3277	1219	43	3		3	CES3	16	67006838	Silent	SNP	G	TCGA-OR-A5KX-01A-11D-A29I-10	46196559	67006838	23347915	78	8714										
LSMD1	84316	bcgsc.ca	37	chr17	7760704	7760704	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0776699029126214	8	0.929330005145667	1.17866447278212	2.24399582318134	0.917356783061556	0.637186343068696	1	0	ccagagcccgtgctaaccccAgcactggagctgctctgacg	11	16	1	2	rs8522	bycluster;byfrequency;by1000genomes	TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8369398d-9d6a-48dd-b20d-4e699ceddc1b	4b83e274-a5a1-430f-8ea8-70a4a64581c9	.	LSMD1-91	NM_032356	exon1	c.T38C	p.L13P	AACCCCAGCACTG	.	97	5	180	1	A|0.678;G|0.322	1	1	0	0	0	G	7760704	A	G	7760704	3	3	39	1	0	0	0	0	1	0	0	0	9089	188	7	4	491	4	LSMD1	17	7760704	Missense_Mutation	SNP	A	TCGA-OR-A5KX-01A-11D-A29I-10		7760704	73434506	79	8715										
MYH4	4622	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	10358566	10358566	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0776699029126214	8	0.929330005145667	1.17866447278212	2.24399582318134	0.917356783061556	0.637186343068696	1	0	ctcagaagccttcttgctgtCaatgaactgaccctctggga	9	12	4	3	novel		TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8369398d-9d6a-48dd-b20d-4e699ceddc1b	4b83e274-a5a1-430f-8ea8-70a4a64581c9	.	MYH4-102	NM_017533	exon20	c.G2221A	p.D741N	TGCTGTCAATGAA	.	62	6	102	0	.	0	0	0	0	0	T	10358566	C	T	10358566	3	4	39	1	0	0	0	0	1	0	0	0	10065	826	29	3	3682	3	MYH4	17	10358566	Missense_Mutation	SNP	C	TCGA-OR-A5KX-01A-11D-A29I-10	2597862	10358566	70836644	80	8716										
ELAC2	60528	hgsc.bcm.edu;broad.mit.edu	37	chr17	12905890	12905890	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0776699029126214	8	0.929330005145667	1.17866447278212	2.24399582318134	0.917356783061556	0.637186343068696	1	0	accaagtgctgggtgtcaggCccaaacctgtgaagaaacag	12	10	1	2	novel		TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8369398d-9d6a-48dd-b20d-4e699ceddc1b	4b83e274-a5a1-430f-8ea8-70a4a64581c9	.	ELAC2-90	NM_173717	exon13	c.G1086C	p.G362G	GTCAGGCCCAAAC	.	97	5	162	0	.	0	0	0	0	0	G	12905890	C	G	12905890	2	3	39	1	0	0	0	0	0	0	0	1	5060	726	26	3		3	ELAC2	17	12905890	Silent	SNP	C	TCGA-OR-A5KX-01A-11D-A29I-10	2547324	12905890	68289320	81	8717										
ELAC2	60528	bcgsc.ca	37	chr17	12915009	12915009	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0776699029126214	8	0.929330005145667	1.17866447278212	2.24399582318134	0.917356783061556	0.637186343068696	1	0	ggtgtggctcattttcattcGactcggagtctgaagatcgc	12	9	3	2	rs4792311	byfrequency	TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8369398d-9d6a-48dd-b20d-4e699ceddc1b	4b83e274-a5a1-430f-8ea8-70a4a64581c9	.	ELAC2-90	NM_173717	exon7	c.C650T	p.S217L	TCATTCGACTCGG	.	93	6	185	3	G|0.755;A|0.245	5	5	0	0	0	A	12915009	G	A	12915009	3	1	39	1	0	0	0	0	1	0	0	0	5060	1059	37	1	1902	1	ELAC2	17	12915009	Missense_Mutation	SNP	G	TCGA-OR-A5KX-01A-11D-A29I-10	9119	12915009	68280201	82	8718										
FOXN1	8456	broad.mit.edu	37	chr17	26862078	26862078	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0776699029126214	8	0.929330005145667	1.17866447278212	2.24399582318134	0.917356783061556	0.637186343068696	1	0	actcgcctctgcctgcccacAccccacccagccacagtgcc	6	23	1	0	novel		TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8369398d-9d6a-48dd-b20d-4e699ceddc1b	4b83e274-a5a1-430f-8ea8-70a4a64581c9	.	FOXN1-226	NM_003593	exon7	c.A1489C	p.T497P	GCCCACACCCCAC	.	96	14	74	8	.	0	0	0	0	0	C	26862078	A	C	26862078	3	2	39	1	0	0	0	0	1	0	0	0	6038	159	6	5	1515	5	FOXN1	17	26862078	Missense_Mutation	SNP	A	TCGA-OR-A5KX-01A-11D-A29I-10	13947069	26862078	54333132	83	8719										
GPS1	2873	bcgsc.ca	37	chr17	80012449	80012449	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0776699029126214	8	0.929330005145667	1.17866447278212	2.24399582318134	0.917356783061556	0.637186343068696	1	0	gagcccccagccctggacacGgcctgggtggaggccacgcg	16	16	0	0	rs11077966	byfrequency	TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8369398d-9d6a-48dd-b20d-4e699ceddc1b	4b83e274-a5a1-430f-8ea8-70a4a64581c9	.	GPS1-226	NM_212492	exon4	c.G492A	p.T164T	GGACACGGCCTGG	.	79	5	81	0	G|0.901;A|0.099	41	41	0	0	0	A	80012449	G	A	80012449	2	1	39	1	0	0	0	0	0	0	0	1	6753	1103	39	1		1	GPS1	17	80012449	Silent	SNP	G	TCGA-OR-A5KX-01A-11D-A29I-10	53150371	80012449	1182761	84	8720										
LAMA1	284217	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr18	7011370	7011370	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0776699029126214	8	0.929330005145667	1.17866447278212	2.24399582318134	0.917356783061556	0.637186343068696	1	0	gatgtgctgccggacggtggCggcatccagcaggaagtcgg	18	10	0	0	rs202168119		TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8369398d-9d6a-48dd-b20d-4e699ceddc1b	4b83e274-a5a1-430f-8ea8-70a4a64581c9	.	LAMA1-149	NM_005559	exon25	c.G3616A	p.A1206T	CGGTGGCGGCATC	.	194	38	160	1	C|0.999;T|0.000	0	0	0	0	0	T	7011370	C	T	7011370	3	4	39	1	0	0	0	0	1	0	0	0	8627	768	27	1	5767	1	LAMA1	18	7011370	Missense_Mutation	SNP	C	TCGA-OR-A5KX-01A-11D-A29I-10		7011370	71065878	85	8721										
LAMA1	284217	broad.mit.edu	37	chr18	7034664	7034664	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0776699029126214	8	0.929330005145667	1.17866447278212	2.24399582318134	0.917356783061556	0.637186343068696	1	0	gcaatgacagaccctcagccTgtgtgcttaaagtgagtccg	11	11	1	3	novel		TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8369398d-9d6a-48dd-b20d-4e699ceddc1b	4b83e274-a5a1-430f-8ea8-70a4a64581c9	.	LAMA1-149	NM_005559	exon14	c.A1865T	p.Q622L	TCAGCCTGTGTGC	.	121	4	138	0	.	0	0	0	0	0	A	7034664	T	A	7034664	3	1	39	1	0	0	0	0	1	0	0	0	8627	1580	55	5	7562	5	LAMA1	18	7034664	Missense_Mutation	SNP	T	TCGA-OR-A5KX-01A-11D-A29I-10	23294	7034664	71042584	86	8722										
C3	718	bcgsc.ca	37	chr19	6710782	6710782	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0776699029126214	8	0.929330005145667	1.17866447278212	2.24399582318134	0.917356783061556	0.637186343068696	1	0	aagtcggtggtgatggacagGggcagcaccaccaggtcctg	16	10	0	1	rs2230203	byfrequency	TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8369398d-9d6a-48dd-b20d-4e699ceddc1b	4b83e274-a5a1-430f-8ea8-70a4a64581c9	.	C3-95	NM_000064	exon13	c.C1554A	p.P518P	GGACAGGGGCAGC	.	275	9	258	2	G|0.888;T|0.112	4	3	1	0	0	T	6710782	G	T	6710782	2	4	39	1	0	0	0	0	0	0	0	1	2210	1219	43	3		3	C3	19	6710782	Silent	SNP	G	TCGA-OR-A5KX-01A-11D-A29I-10		6710782	52418201	87	8723										
PRDX2	7001	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr19	12907982	12907983	+	Splice_Site	DEL	TG	TG	-													0.0776699029126214	8	0.929330005145667	1.17866447278212	2.24399582318134	0.917356783061556	0.637186343068696	1	0	ttccagccagcgggacaaacTgtgggaagacacaaggatgc					novel		TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10	TG	TG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8369398d-9d6a-48dd-b20d-4e699ceddc1b	4b83e274-a5a1-430f-8ea8-70a4a64581c9	.	PRDX2-90	.	.	.	.	ACAAACTGTGGGA	.	155	17	116	0	.	0	0	0	0	0	-	12907983	TG	-	12907982	8	5	39	1	0	1	0	1	0	0	1	0	12497	1594	55	0	90	0	PRDX2	19	12907982	Splice_Site	DEL	TG	TCGA-OR-A5KX-01A-11D-A29I-10	6197200	12907982	46221001	88	8724										
IL27RA	9466	ucsc.edu;bcgsc.ca	37	chr19	14161650	14161650	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0776699029126214	8	0.929330005145667	1.17866447278212	2.24399582318134	0.917356783061556	0.637186343068696	1	0	gggtgacagcatctaccatcGctggacagggccctcctggt	13	13	1	1	novel		TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8369398d-9d6a-48dd-b20d-4e699ceddc1b	4b83e274-a5a1-430f-8ea8-70a4a64581c9	.	IL27RA-90	NM_004843	exon11	c.G1483A	p.A495T	ACCATCGCTGGAC	.	179	23	128	2	.	3	3	0	0	0	A	14161650	G	A	14161650	3	1	39	1	0	0	0	0	1	0	0	0	7702	1087	38	1	1525	1	IL27RA	19	14161650	Missense_Mutation	SNP	G	TCGA-OR-A5KX-01A-11D-A29I-10	1253668	14161650	44967333	89	8725										
NOTCH3	4854	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr19	15300189	15300189	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.0776699029126214	8	0.929330005145667	1.17866447278212	2.24399582318134	0.917356783061556	0.637186343068696	1	0	atttgtgtcacagatagcatCctcgtggcaggggttgctga	13	8	1	2	novel		TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8369398d-9d6a-48dd-b20d-4e699ceddc1b	4b83e274-a5a1-430f-8ea8-70a4a64581c9	.	NOTCH3-855	NM_000435	exon7	c.G1087C	p.D363H	TAGCATCCTCGTG	.	543	43	143	0	.	0	0	0	0	0	G	15300189	C	G	15300189	3	3	39	1	0	0	0	0	1	0	0	0	10579	855	30	3	5986	3	NOTCH3	19	15300189	Missense_Mutation	SNP	C	TCGA-OR-A5KX-01A-11D-A29I-10	1138539	15300189	43828794	90	8726										
PGLS	25796	hgsc.bcm.edu	37	chr19	17622614	17622614	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0776699029126214	8	0.929330005145667	1.17866447278212	2.24399582318134	0.917356783061556	0.637186343068696	1	0	gcgcccgtttcgcgctcggcCtgtcgggcgggagcctcgtc	16	16	0	0	rs11086075	byfrequency	TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8369398d-9d6a-48dd-b20d-4e699ceddc1b	4b83e274-a5a1-430f-8ea8-70a4a64581c9	.	PGLS-90	NM_012088	exon1	c.C133T	p.L45L	CTCGGCCTGTCGG	.	8	8	0	0	C|0.617;T|0.383	1	0	1	0	0	T	17622614	C	T	17622614	2	4	39	1	0	0	0	0	0	0	0	1	11821	680	24	3		3	PGLS	19	17622614	Silent	SNP	C	TCGA-OR-A5KX-01A-11D-A29I-10	2322425	17622614	41506369	91	8727										
KIAA1683	80726	broad.mit.edu	37	chr19	18375608	18375608	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0776699029126214	8	0.929330005145667	1.17866447278212	2.24399582318134	0.917356783061556	0.637186343068696	1	0	cccaggacctccttggacagGgcctggttcagagctgccca	12	15	1	1	rs8102923	byfrequency	TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8369398d-9d6a-48dd-b20d-4e699ceddc1b	4b83e274-a5a1-430f-8ea8-70a4a64581c9	.	KIAA1683-92	NM_001145304	exon3	c.C2742T	p.A914A	GGACAGGGCCTGG	.	140	5	155	2	G|0.726;A|0.274	1	1	0	0	0	A	18375608	G	A	18375608	2	1	39	1	0	0	0	0	0	0	0	1	8272	1219	43	3		3	KIAA1683	19	18375608	Silent	SNP	G	TCGA-OR-A5KX-01A-11D-A29I-10	752994	18375608	40753375	92	8728										
MAG	4099	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	35800808	35800808	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0776699029126214	8	0.929330005145667	1.17866447278212	2.24399582318134	0.917356783061556	0.637186343068696	1	0	ctcctcctggagtcccactgCgcggcagcccgagacacggt	12	17	0	1	rs200957534		TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8369398d-9d6a-48dd-b20d-4e699ceddc1b	4b83e274-a5a1-430f-8ea8-70a4a64581c9	.	MAG-947	NM_080600	exon8	c.C1263T	p.C421C	CCACTGCGCGGCA	.	218	160	70	0	.	0	0	0	0	0	T	35800808	C	T	35800808	2	4	39	1	0	0	0	0	0	0	0	1	9190	776	27	1		1	MAG	19	35800808	Silent	SNP	C	TCGA-OR-A5KX-01A-11D-A29I-10	17425200	35800808	23328175	93	8729										
PNKP	11284	broad.mit.edu	37	chr19	50370408	50370408	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0776699029126214	8	0.929330005145667	1.17866447278212	2.24399582318134	0.917356783061556	0.637186343068696	1	0	ggcaggaagatggggggcgcTcccccaggggggctctcgag	20	11	1	1	novel		TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8369398d-9d6a-48dd-b20d-4e699ceddc1b	4b83e274-a5a1-430f-8ea8-70a4a64581c9	.	PNKP-253	NM_007254	exon2	c.A54G	p.G18G	GGGCGCTCCCCCA	.	87	21	43	6	.	31	28	3	0	0	C	50370408	T	C	50370408	2	2	39	1	0	0	0	0	0	0	0	1	12176	1538	54	4		4	PNKP	19	50370408	Silent	SNP	T	TCGA-OR-A5KX-01A-11D-A29I-10	14569600	50370408	8758575	94	8730										
ASPDH	554235	hgsc.bcm.edu	37	chr19	51015404	51015404	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0776699029126214	8	0.929330005145667	1.17866447278212	2.24399582318134	0.917356783061556	0.637186343068696	1	0	tggccgcacccaggaggctcTgccagaaggccgtgacggtg	16	13	1	2	rs12977172	byfrequency	TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8369398d-9d6a-48dd-b20d-4e699ceddc1b	4b83e274-a5a1-430f-8ea8-70a4a64581c9	.	ASPDH-90	NM_001114598	exon6	c.A797G	p.Q266R	AGGCTCTGCCAGA	.	23	17	2	0	T|0.228;C|0.772	0	0	0	0	0	C	51015404	T	C	51015404	3	2	39	1	0	0	0	0	1	0	0	0	1052	1580	55	4	62	4	ASPDH	19	51015404	Missense_Mutation	SNP	T	TCGA-OR-A5KX-01A-11D-A29I-10	644996	51015404	8113579	95	8731										
LRRC4B	94030	hgsc.bcm.edu	37	chr19	51052015	51052015	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0776699029126214	8	0.929330005145667	1.17866447278212	2.24399582318134	0.917356783061556	0.637186343068696	1	0	aggggtggggagaagagccaGaggaagagcaatgccccgtg	19	7	0	4	rs190220944	by1000genomes	TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8369398d-9d6a-48dd-b20d-4e699ceddc1b	4b83e274-a5a1-430f-8ea8-70a4a64581c9	.	LRRC4B-205	NM_001080457	exon2	c.C81T	p.L27L	GAGCCAGAGGAAG	.	20	13	2	0	G|0.995;A|0.005	0	0	0	0	0	A	51052015	G	A	51052015	2	1	39	1	0	0	0	0	0	0	0	1	9034	929	33	3		3	LRRC4B	19	51052015	Silent	SNP	G	TCGA-OR-A5KX-01A-11D-A29I-10	36611	51052015	8076968	96	8732										
LRRC4B	94030	hgsc.bcm.edu	37	chr19	51052073	51052073	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0776699029126214	8	0.929330005145667	1.17866447278212	2.24399582318134	0.917356783061556	0.637186343068696	1	0	cgggcggcagcggggggcacGgggagccgcgggcacgcgcc	23	14	0	0	rs142075522		TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8369398d-9d6a-48dd-b20d-4e699ceddc1b	4b83e274-a5a1-430f-8ea8-70a4a64581c9	.	LRRC4B-205	NM_001080457	exon2	c.C23T	p.P8L	GGGCACGGGGAGC	.	7	5	3	0	G|0.995;A|0.005	0	0	0	0	0	A	51052073	G	A	51052073	3	1	39	1	0	0	0	0	1	0	0	0	9034	1116	39	1	2126	1	LRRC4B	19	51052073	Missense_Mutation	SNP	G	TCGA-OR-A5KX-01A-11D-A29I-10	58	51052073	8076910	97	8733										
ZNF814	730051	ucsc.edu	37	chr19	58384739	58384739	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0776699029126214	8	0.929330005145667	1.17866447278212	2.24399582318134	0.917356783061556	0.637186343068696	1	0	tgctggtgtagaatgaggttAcccttgtgactaaaacattt	10	6	0	3	novel		TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8369398d-9d6a-48dd-b20d-4e699ceddc1b	4b83e274-a5a1-430f-8ea8-70a4a64581c9	.	.	NM_001144989	exon3	c.T2019C	p.G673G	GAGGTTACCCTTG	.	318	2	229	1	.	13	10	3	0	0	G	58384739	A	G	58384739	2	3	39	1	0	0	0	0	0	0	0	1	18213	378	14	4		4	ZNF814	19	58384739	Silent	SNP	A	TCGA-OR-A5KX-01A-11D-A29I-10	7332666	58384739	744244	98	8734										
DDRGK1	65992	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr20	3181069	3181069	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0776699029126214	8	0.929330005145667	1.17866447278212	2.24399582318134	0.917356783061556	0.637186343068696	1	0	ttccccgacaggtgagtttcCgctggcttctcgacaccttc	9	15	1	1	rs148502836		TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8369398d-9d6a-48dd-b20d-4e699ceddc1b	4b83e274-a5a1-430f-8ea8-70a4a64581c9	.	DDRGK1-90	NM_023935	exon3	c.G327A	p.A109A	AGTTTCCGCTGGC	.	173	42	120	0	C|1.000;T|0.000	222	152	70	0	0	T	3181069	C	T	3181069	2	4	39	1	0	0	0	0	0	0	0	1	4344	639	23	1		1	DDRGK1	20	3181069	Silent	SNP	C	TCGA-OR-A5KX-01A-11D-A29I-10		3181069	59844451	99	8735										
MCM8	84515	ucsc.edu;bcgsc.ca	37	chr20	5939263	5939263	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0776699029126214	8	0.929330005145667	1.17866447278212	2.24399582318134	0.917356783061556	0.637186343068696	1	0	tctaagagggacagtggttcGtgtcagtaatataaagcctc	11	7	2	1	novel		TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8369398d-9d6a-48dd-b20d-4e699ceddc1b	4b83e274-a5a1-430f-8ea8-70a4a64581c9	.	MCM8-227	NM_032485	exon7	c.G680A	p.R227H	TGGTTCGTGTCAG	.	213	133	170	3	.	2	0	2	0	0	A	5939263	G	A	5939263	3	1	39	1	0	0	0	0	1	0	0	0	9421	1145	40	1	702	1	MCM8	20	5939263	Missense_Mutation	SNP	G	TCGA-OR-A5KX-01A-11D-A29I-10	2758194	5939263	57086257	100	8736										
ZFP64	55734	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr20	50769031	50769031	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0776699029126214	8	0.929330005145667	1.17866447278212	2.24399582318134	0.917356783061556	0.637186343068696	1	0	gggtggtcagcaggacagccGgctgggtcattgcgcccgcc	17	13	2	0	novel		TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8369398d-9d6a-48dd-b20d-4e699ceddc1b	4b83e274-a5a1-430f-8ea8-70a4a64581c9	.	ZFP64-155	NM_018197	exon6	c.C1700T	p.P567L	ACAGCCGGCTGGG	.	100	35	56	1	.	15	8	7	0	0	A	50769031	G	A	50769031	3	1	39	1	0	0	0	0	1	0	0	0	17689	1116	39	1	1540	1	ZFP64	20	50769031	Missense_Mutation	SNP	G	TCGA-OR-A5KX-01A-11D-A29I-10	44829768	50769031	12256489	101	8737										
TXNRD2	10587	bcgsc.ca	37	chr22	19867771	19867771	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0776699029126214	8	0.929330005145667	1.17866447278212	2.24399582318134	0.917356783061556	0.637186343068696	1	0	cccacacagccatactccagCggggtgaagacggtcgtggg	14	13	0	2	rs1139795	byfrequency	TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8369398d-9d6a-48dd-b20d-4e699ceddc1b	4b83e274-a5a1-430f-8ea8-70a4a64581c9	.	TXNRD2-92	.	.	.	.	CTCCAGCGGGGTG	.	71	4	148	0	C|0.782;T|0.218	51	51	0	0	0	T	19867771	C	T	19867771	2	4	39	1	0	0	0	0	0	0	0	1	16846	755	27	1		1	TXNRD2	22	19867771	Silent	SNP	C	TCGA-OR-A5KX-01A-11D-A29I-10		19867771	31436795	102	8738										
ZNF280A	129025	bcgsc.ca	37	chr22	22869085	22869085	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0776699029126214	8	0.929330005145667	1.17866447278212	2.24399582318134	0.917356783061556	0.637186343068696	1	0	gtggtgtgagtcttctgttcCggctgcccatctcctttatg	11	11	3	1	rs61746878	byfrequency	TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8369398d-9d6a-48dd-b20d-4e699ceddc1b	4b83e274-a5a1-430f-8ea8-70a4a64581c9	.	ZNF280A-69	NM_080740	exon2	c.G870A	p.P290P	CTGTTCCGGCTGC	.	115	5	199	0	C|0.976;T|0.024	1	1	0	0	0	T	22869085	C	T	22869085	2	4	39	1	0	0	0	0	0	0	0	1	17851	639	23	1		1	ZNF280A	22	22869085	Silent	SNP	C	TCGA-OR-A5KX-01A-11D-A29I-10	3001314	22869085	28435481	103	8739										
FBXO7	25793	broad.mit.edu	37	chr22	32881102	32881102	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0776699029126214	8	0.929330005145667	1.17866447278212	2.24399582318134	0.917356783061556	0.637186343068696	1	0	ccggagaagtggaagttgagCggggtgtataagctgcagta	17	5	0	2	rs61752254	byfrequency	TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8369398d-9d6a-48dd-b20d-4e699ceddc1b	4b83e274-a5a1-430f-8ea8-70a4a64581c9	.	FBXO7-228	NM_012179	exon4	c.C693T	p.S231S	GTTGAGCGGGGTG	.	101	4	202	1	C|0.996;T|0.004	32	32	0	0	0	T	32881102	C	T	32881102	2	4	39	1	0	0	0	0	0	0	0	1	5779	767	27	1		1	FBXO7	22	32881102	Silent	SNP	C	TCGA-OR-A5KX-01A-11D-A29I-10	10012017	32881102	18423464	104	8740										
SAMM50	25813	bcgsc.ca	37	chr22	44368204	44368204	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0776699029126214	8	0.929330005145667	1.17866447278212	2.24399582318134	0.917356783061556	0.637186343068696	1	0	agttataacaccatggttggAaacaatgaaggcagtatggt	11	5	0	1	rs3177036	byfrequency	TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8369398d-9d6a-48dd-b20d-4e699ceddc1b	4b83e274-a5a1-430f-8ea8-70a4a64581c9	.	SAMM50-91	NM_015380	exon5	c.A411G	p.G137G	GGTTGGAAACAAT	.	110	6	219	1	A|0.383;G|0.617	16	16	0	0	0	G	44368204	A	G	44368204	2	3	39	1	0	0	0	0	0	0	0	1	13864	233	9	4		4	SAMM50	22	44368204	Silent	SNP	A	TCGA-OR-A5KX-01A-11D-A29I-10	11487102	44368204	6936362	105	8741										
SPIN2B	474343	hgsc.bcm.edu;bcgsc.ca	37	chrX	57146333	57146333	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0776699029126214	8	0.929330005145667	1.17866447278212	2.24399582318134	0.917356783061556	0.637186343068696	1	0	atagatatggaaatcatcatCaaacttgatgaaatacacag	6	6	3	3	novel		TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8369398d-9d6a-48dd-b20d-4e699ceddc1b	4b83e274-a5a1-430f-8ea8-70a4a64581c9	.	SPIN2B-90	NM_001006683	exon2	c.G730C	p.D244H	CATCATCAAACTT	.	1390	416	1499	2	.	4	4	0	0	0	G	57146333	C	G	57146333	3	3	39	1	0	0	0	0	1	0	0	0	15091	826	29	3	50	3	SPIN2B	23	57146333	Missense_Mutation	SNP	C	TCGA-OR-A5KX-01A-11D-A29I-10		57146333	98124227	106	8742										
ZXDB	158586	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	chrX	57619015	57619015	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0776699029126214	8	0.929330005145667	1.17866447278212	2.24399582318134	0.917356783061556	0.637186343068696	1	0	cacaaccaggacctgctgttGcgctttgagaacggcgtcct	11	13	0	1	novel		TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8369398d-9d6a-48dd-b20d-4e699ceddc1b	4b83e274-a5a1-430f-8ea8-70a4a64581c9	.	ZXDB-130	NM_007157	exon1	c.G534A	p.L178L	GCTGTTGCGCTTT	.	119	38	75	0	.	0	0	0	0	0	A	57619015	G	A	57619015	2	1	39	1	0	0	0	0	0	0	0	1	18288	1310	46	3		3	ZXDB	23	57619015	Silent	SNP	G	TCGA-OR-A5KX-01A-11D-A29I-10	472682	57619015	97651545	107	8743										
HEPH	9843	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chrX	65423292	65423292	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0776699029126214	8	0.929330005145667	1.17866447278212	2.24399582318134	0.917356783061556	0.637186343068696	1	0	tctcccagtgtcctggccacCaagccacccctcgccaacgc	7	21	1	0	novel		TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8369398d-9d6a-48dd-b20d-4e699ceddc1b	4b83e274-a5a1-430f-8ea8-70a4a64581c9	.	HEPH-135	NM_138737	exon13	c.C2326T	p.Q776X	GGCCACCAAGCCA	.	237	12	219	0	.	0	0	0	0	0	T	65423292	C	T	65423292	4	4	39	1	0	0	0	0	0	1	0	0	7075	595	21	3	2376	3	HEPH	23	65423292	Nonsense_Mutation	SNP	C	TCGA-OR-A5KX-01A-11D-A29I-10	7804277	65423292	89847268	108	8744										
GUCY2F	2986	broad.mit.edu;bcgsc.ca	37	chrX	108635183	108635183	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0776699029126214	8	0.929330005145667	1.17866447278212	2.24399582318134	0.917356783061556	0.637186343068696	1	0	ttattgcatcaaagagtgtgTacaggtcattcagaagatcc	9	7	3	3	novel		TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8369398d-9d6a-48dd-b20d-4e699ceddc1b	4b83e274-a5a1-430f-8ea8-70a4a64581c9	.	GUCY2F-540	NM_001522	exon14	c.A2738T	p.Y913F	AGTGTGTACAGGT	.	489	23	474	1	.	0	0	0	0	0	A	108635183	T	A	108635183	3	1	39	1	0	0	0	0	1	0	0	0	6919	1638	57	5	612	5	GUCY2F	23	108635183	Missense_Mutation	SNP	T	TCGA-OR-A5KX-01A-11D-A29I-10	43211891	108635183	46635377	109	8745										
FRMD7	90167	broad.mit.edu;bcgsc.ca	37	chrX	131216403	131216403	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0776699029126214	8	0.929330005145667	1.17866447278212	2.24399582318134	0.917356783061556	0.637186343068696	1	0	ttaattacctatagcggaaaCtggaacccttgctgcagagt	9	9	0	1	novel		TCGA-OR-A5KX-01A-11D-A29I-10	TCGA-OR-A5KX-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8369398d-9d6a-48dd-b20d-4e699ceddc1b	4b83e274-a5a1-430f-8ea8-70a4a64581c9	.	FRMD7-228	NM_194277	exon9	c.G893C	p.S298T	CGGAAACTGGAAC	.	196	8	183	0	.	0	0	0	0	0	G	131216403	C	G	131216403	3	3	39	1	0	0	0	0	1	0	0	0	6074	565	20	3	1267	3	FRMD7	23	131216403	Missense_Mutation	SNP	C	TCGA-OR-A5KX-01A-11D-A29I-10	22581220	131216403	24054157	110	8746										
SRM	6723	hgsc.bcm.edu	37	chr1	11119899	11119899	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0568181818181818	5	0.879924288468896	1.50431752764733	1.64472049689441	1.42331581462016	1	1	0	agcagctgctccacctgcagTgacagggcctggccgggcca	14	15	0	1	rs7545802		TCGA-OR-A5KZ-01A-11D-A29I-10	TCGA-OR-A5KZ-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d5d4c41b-6ff9-4b93-aea8-e6caef2209e1	4d364400-c9b7-492f-a193-1beeeb2b1d82	.	SRM-90	NM_003132	exon1	c.A102G	p.S34S	CTGCAGTGACAGG	.	7	7	0	0	T|0.001;C|0.999	31	0	31	0	0	C	11119899	T	C	11119899	2	2	40	1	0	0	0	0	0	0	0	1	15188	1683	59	4		4	SRM	1	11119899	Silent	SNP	T	TCGA-OR-A5KZ-01A-11D-A29I-10		11119899	238130722	1	8747										
XKR8	55113	hgsc.bcm.edu	37	chr1	28286666	28286666	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0568181818181818	5	0.879924288468896	1.50431752764733	1.64472049689441	1.42331581462016	1	1	0	cttcctgctcgacctgggcaCcgacctgtgggccgccgtcc	12	18	0	0	rs201643190		TCGA-OR-A5KZ-01A-11D-A29I-10	TCGA-OR-A5KZ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d5d4c41b-6ff9-4b93-aea8-e6caef2209e1	4d364400-c9b7-492f-a193-1beeeb2b1d82	.	XKR8-90	NM_018053	exon1	c.C86T	p.T29I	TGGGCACCGACCT	.	5	5	0	0	.	1	0	1	0	0	T	28286666	C	T	28286666	3	4	40	1	0	0	0	0	1	0	0	0	17475	507	18	3	88	3	XKR8	1	28286666	Missense_Mutation	SNP	C	TCGA-OR-A5KZ-01A-11D-A29I-10	17166767	28286666	220963955	2	8748										
ZZZ3	26009	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	78098574	78098574	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0568181818181818	5	0.879924288468896	1.50431752764733	1.64472049689441	1.42331581462016	1	1	0	tcgtttagtcccttgaaaatCtgcatcattgtccactactg	6	11	2	1	novel		TCGA-OR-A5KZ-01A-11D-A29I-10	TCGA-OR-A5KZ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d5d4c41b-6ff9-4b93-aea8-e6caef2209e1	4d364400-c9b7-492f-a193-1beeeb2b1d82	.	ZZZ3-157	NM_015534	exon5	c.G466T	p.D156Y	GAAAATCTGCATC	.	159	14	120	0	.	4	4	0	0	0	A	78098574	C	A	78098574	3	1	40	1	0	0	0	0	1	0	0	0	18293	913	32	3	2289	3	ZZZ3	1	78098574	Missense_Mutation	SNP	C	TCGA-OR-A5KZ-01A-11D-A29I-10	49811908	78098574	171152047	3	8749										
LOR	4014	hgsc.bcm.edu	37	chr1	153233701	153233701	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0568181818181818	5	0.879924288468896	1.50431752764733	1.64472049689441	1.42331581462016	1	1	0	gggagcgtcaagtactccggAggcggcggctcctccggcgg	18	13	1	0	rs1143390	bycluster;byfrequency;by1000genomes	TCGA-OR-A5KZ-01A-11D-A29I-10	TCGA-OR-A5KZ-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d5d4c41b-6ff9-4b93-aea8-e6caef2209e1	4d364400-c9b7-492f-a193-1beeeb2b1d82	.	LOR-90	NM_000427	exon2	c.A276C	p.G92G	CTCCGGAGGCGGC	.	4	4	0	0	A|0.594;C|0.406	0	0	0	0	0	C	153233701	A	C	153233701	2	2	40	1	0	0	0	0	0	0	0	1	8924	291	11	5		5	LOR	1	153233701	Silent	SNP	A	TCGA-OR-A5KZ-01A-11D-A29I-10	75135127	153233701	96016920	4	8750										
KLHDC8A	55220	bcgsc.ca	37	chr1	205306590	205306590	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0568181818181818	5	0.879924288468896	1.50431752764733	1.64472049689441	1.42331581462016	1	1	0	ccctggttgacacctcccacGgcgaggaggcagttcttgac	12	14	1	2	rs3210952	byfrequency	TCGA-OR-A5KZ-01A-11D-A29I-10	TCGA-OR-A5KZ-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d5d4c41b-6ff9-4b93-aea8-e6caef2209e1	4d364400-c9b7-492f-a193-1beeeb2b1d82	.	KLHDC8A-91	NM_001271864	exon7	c.C990T	p.A330A	TCCCACGGCGAGG	.	117	5	98	1	G|0.841;A|0.159	23	23	0	0	0	A	205306590	G	A	205306590	2	1	40	1	0	0	0	0	0	0	0	1	8383	1103	39	1		1	KLHDC8A	1	205306590	Silent	SNP	G	TCGA-OR-A5KZ-01A-11D-A29I-10	52072889	205306590	43944031	5	8751										
PLXNA2	5362	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	208202216	208202216	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0568181818181818	5	0.879924288468896	1.50431752764733	1.64472049689441	1.42331581462016	1	1	0	ctggggatgtccttggcataGagcagcttgttggaggggga	18	6	0	1	novel		TCGA-OR-A5KZ-01A-11D-A29I-10	TCGA-OR-A5KZ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d5d4c41b-6ff9-4b93-aea8-e6caef2209e1	4d364400-c9b7-492f-a193-1beeeb2b1d82	.	PLXNA2-92	NM_025179	exon30	c.C5397G	p.L1799L	GGCATAGAGCAGC	.	171	152	136	0	.	1	1	0	0	0	C	208202216	G	C	208202216	2	2	40	1	0	0	0	0	0	0	0	1	12149	929	33	3		3	PLXNA2	1	208202216	Silent	SNP	G	TCGA-OR-A5KZ-01A-11D-A29I-10	2895626	208202216	41048405	6	8752										
CMPK2	129607	hgsc.bcm.edu	37	chr2	7005369	7005369	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0568181818181818	5	0.879924288468896	1.50431752764733	1.64472049689441	1.42331581462016	1	1	0	tgcgggcgtggtgcctcctgAcaggcgcccagcagctcgag	16	14	0	1	rs11678810		TCGA-OR-A5KZ-01A-11D-A29I-10	TCGA-OR-A5KZ-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d5d4c41b-6ff9-4b93-aea8-e6caef2209e1	4d364400-c9b7-492f-a193-1beeeb2b1d82	.	CMPK2-68	NM_001256478	exon1	c.T459C	p.C153C	CTCCTGACAGGCG	.	5	5	0	0	A|0.003;G|0.997	0	0	0	0	0	G	7005369	A	G	7005369	2	3	40	1	0	0	0	0	0	0	0	1	3587	273	10	4		4	CMPK2	2	7005369	Silent	SNP	A	TCGA-OR-A5KZ-01A-11D-A29I-10		7005369	236194004	7	8753										
NT5C1B	93034	hgsc.bcm.edu	37	chr2	18766156	18766156	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0568181818181818	5	0.879924288468896	1.50431752764733	1.64472049689441	1.42331581462016	1	1	0	gcgacgcgggtggctggagcGagggctgcccggacagcggc	21	12	0	0	rs61742596	byfrequency	TCGA-OR-A5KZ-01A-11D-A29I-10	TCGA-OR-A5KZ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d5d4c41b-6ff9-4b93-aea8-e6caef2209e1	4d364400-c9b7-492f-a193-1beeeb2b1d82	.	NT5C1B-47	NM_001199087	exon5	c.C578A	p.S193X	TGGAGCGAGGGCT	.	14	13	0	0	G|0.950;T|0.050	0	0	0	0	0	T	18766156	G	T	18766156	4	4	40	1	0	0	0	0	0	1	0	0	10715	1059	37	2	1329	2	NT5C1B	2	18766156	Nonsense_Mutation	SNP	G	TCGA-OR-A5KZ-01A-11D-A29I-10	11760787	18766156	224433217	8	8754										
FAM179A	165186	bcgsc.ca	37	chr2	29226498	29226498	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0568181818181818	5	0.879924288468896	1.50431752764733	1.64472049689441	1.42331581462016	1	1	0	cctggctcccttcccagcccGttacctccaggccagggagt	10	18	0	0	rs12613325	byfrequency	TCGA-OR-A5KZ-01A-11D-A29I-10	TCGA-OR-A5KZ-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d5d4c41b-6ff9-4b93-aea8-e6caef2209e1	4d364400-c9b7-492f-a193-1beeeb2b1d82	.	FAM179A-26	NM_199280	exon6	c.G780A	p.P260P	CAGCCCGTTACCT	.	255	9	243	2	G|0.369;A|0.631	0	0	0	0	0	A	29226498	G	A	29226498	2	1	40	1	0	0	0	0	0	0	0	1	5521	1132	40	1		1	FAM179A	2	29226498	Silent	SNP	G	TCGA-OR-A5KZ-01A-11D-A29I-10	10460342	29226498	213972875	9	8755										
PAIP2B	400961	bcgsc.ca	37	chr2	71417065	71417065	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0568181818181818	5	0.879924288468896	1.50431752764733	1.64472049689441	1.42331581462016	1	1	0	gcctgaggcaggtctcgtgaGggaataaaccagtcttggtc	14	9	2	2	rs357777	byfrequency	TCGA-OR-A5KZ-01A-11D-A29I-10	TCGA-OR-A5KZ-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d5d4c41b-6ff9-4b93-aea8-e6caef2209e1	4d364400-c9b7-492f-a193-1beeeb2b1d82	.	PAIP2B-46	NM_020459	exon3	c.C225A	p.P75P	TCGTGAGGGAATA	.	115	6	121	0	G|0.052;T|0.948	5	5	0	0	0	T	71417065	G	T	71417065	2	4	40	1	0	0	0	0	0	0	0	1	11427	987	35	3		3	PAIP2B	2	71417065	Silent	SNP	G	TCGA-OR-A5KZ-01A-11D-A29I-10	42190567	71417065	171782308	10	8756										
EPB41L5	57669	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr2	120834600	120834601	+	Frame_Shift_Del	DEL	TT	TT	-													0.0568181818181818	5	0.879924288468896	1.50431752764733	1.64472049689441	1.42331581462016	1	1	0	gtcctgaacttgtctcagagTtcagattcgtgcctattcag					novel		TCGA-OR-A5KZ-01A-11D-A29I-10	TCGA-OR-A5KZ-10A-01D-A29L-10	TT	TT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d5d4c41b-6ff9-4b93-aea8-e6caef2209e1	4d364400-c9b7-492f-a193-1beeeb2b1d82	.	EPB41L5-91	NM_020909	exon8	c.559_560del	p.187_187del	TCAGAGTTCAGAT	.	58	56	77	0	.	0	0	0	0	0	-	120834601	TT	-	120834600	7	5	40	1	0	1	0	1	0	0	0	0	5170	1725	60	0	585	0	EPB41L5	2	120834600	Frame_Shift_Del	DEL	TT	TCGA-OR-A5KZ-01A-11D-A29I-10	49417535	120834600	122364773	11	8757										
GALNT5	11227	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	158115239	158115239	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0568181818181818	5	0.879924288468896	1.50431752764733	1.64472049689441	1.42331581462016	1	1	0	aaactagcagctgaaagggaCttgaatgtgaccatcagtct	10	8	2	3	novel		TCGA-OR-A5KZ-01A-11D-A29I-10	TCGA-OR-A5KZ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d5d4c41b-6ff9-4b93-aea8-e6caef2209e1	4d364400-c9b7-492f-a193-1beeeb2b1d82	.	GALNT5-290	NM_014568	exon1	c.C645G	p.D215E	AAGGGACTTGAAT	.	87	40	56	0	.	0	0	0	0	0	G	158115239	C	G	158115239	3	3	40	1	0	0	0	0	1	0	0	0	6236	564	20	3	647	3	GALNT5	2	158115239	Missense_Mutation	SNP	C	TCGA-OR-A5KZ-01A-11D-A29I-10	37280639	158115239	85084134	12	8758										
C2orf62	375307	bcgsc.ca	37	chr2	219221846	219221846	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0568181818181818	5	0.879924288468896	1.50431752764733	1.64472049689441	1.42331581462016	1	1	0	gctaaggaccaccagccctcGggtccggagtgtctgccact	12	15	1	0	rs4324314	byfrequency	TCGA-OR-A5KZ-01A-11D-A29I-10	TCGA-OR-A5KZ-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d5d4c41b-6ff9-4b93-aea8-e6caef2209e1	4d364400-c9b7-492f-a193-1beeeb2b1d82	.	C2orf62-68	NM_198559	exon2	c.G54A	p.S18S	GCCCTCGGGTCCG	.	113	6	95	1	G|0.844;A|0.156	0	0	0	0	0	A	219221846	G	A	219221846	2	1	40	1	0	0	0	0	0	0	0	1	2187	1103	39	1		1	C2orf62	2	219221846	Silent	SNP	G	TCGA-OR-A5KZ-01A-11D-A29I-10	61106607	219221846	23977527	13	8759										
ALPPL2	251	hgsc.bcm.edu	37	chr2	233274475	233274475	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0568181818181818	5	0.879924288468896	1.50431752764733	1.64472049689441	1.42331581462016	1	1	0	ccgcctgcgacctggcgcccCgcgccggcaccaccgacgcc	12	23	0	0	rs56080708	byfrequency	TCGA-OR-A5KZ-01A-11D-A29I-10	TCGA-OR-A5KZ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d5d4c41b-6ff9-4b93-aea8-e6caef2209e1	4d364400-c9b7-492f-a193-1beeeb2b1d82	.	ALPPL2-91	NM_031313	exon11	c.C1492A	p.R498S	GCGCCCCGCGCCG	.	13	10	0	0	C|0.901;A|0.099	0	0	0	0	0	A	233274475	C	A	233274475	3	1	40	1	0	0	0	0	1	0	0	0	549	652	23	2	1534	2	ALPPL2	2	233274475	Missense_Mutation	SNP	C	TCGA-OR-A5KZ-01A-11D-A29I-10	14052629	233274475	9924898	14	8760										
CAND2	23066	bcgsc.ca	37	chr3	12856856	12856856	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0568181818181818	5	0.879924288468896	1.50431752764733	1.64472049689441	1.42331581462016	1	1	0	cgtgctgctgcggcaaacacAgcccccgaagggatggctgg	15	13	0	0	rs2305398	byfrequency	TCGA-OR-A5KZ-01A-11D-A29I-10	TCGA-OR-A5KZ-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d5d4c41b-6ff9-4b93-aea8-e6caef2209e1	4d364400-c9b7-492f-a193-1beeeb2b1d82	.	CAND2-72	NM_001162499	exon8	c.A1223G	p.Q408R	AAACACAGCCCCC	.	717	17	673	8	G|0.597;N|0.001	0	0	0	0	0	G	12856856	A	G	12856856	3	3	40	1	0	0	0	0	1	0	0	0	2622	188	7	4	1253	4	CAND2	3	12856856	Missense_Mutation	SNP	A	TCGA-OR-A5KZ-01A-11D-A29I-10		12856856	185165574	15	8761										
MST1	4485	broad.mit.edu	37	chr3	49723596	49723596	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0568181818181818	5	0.879924288468896	1.50431752764733	1.64472049689441	1.42331581462016	1	1	0	agggcgcctctgagccgtcgGggttccggcagaagttctcc	15	13	2	2	rs200900272		TCGA-OR-A5KZ-01A-11D-A29I-10	TCGA-OR-A5KZ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d5d4c41b-6ff9-4b93-aea8-e6caef2209e1	4d364400-c9b7-492f-a193-1beeeb2b1d82	.	MST1-278	NM_020998	exon9	c.C1046T	p.P349L	CCGTCGGGGTTCC	.	116	5	66	1	.	7	7	0	0	0	A	49723596	G	A	49723596	3	1	40	1	0	0	0	0	1	0	0	0	9918	1232	43	3	1171	3	MST1	3	49723596	Missense_Mutation	SNP	G	TCGA-OR-A5KZ-01A-11D-A29I-10	36866740	49723596	148298834	16	8762										
RBM6	10180	bcgsc.ca	37	chr3	50097113	50097113	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0568181818181818	5	0.879924288468896	1.50431752764733	1.64472049689441	1.42331581462016	1	1	0	tgtggtgaagatcttacagaAccttgatccgccatttagca	9	9	1	4	rs34707170	byfrequency	TCGA-OR-A5KZ-01A-11D-A29I-10	TCGA-OR-A5KZ-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d5d4c41b-6ff9-4b93-aea8-e6caef2209e1	4d364400-c9b7-492f-a193-1beeeb2b1d82	.	RBM6-280	NM_005777	exon11	c.A2162G	p.N721S	TACAGAACCTTGA	.	174	6	119	0	A|0.998;C|0.000;G|0.001	18	18	0	0	0	G	50097113	A	G	50097113	3	3	40	1	0	0	0	0	1	0	0	0	13179	43	2	4	2200	4	RBM6	3	50097113	Missense_Mutation	SNP	A	TCGA-OR-A5KZ-01A-11D-A29I-10	373517	50097113	147925317	17	8763										
CNTN3	5067	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	74385793	74385793	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0568181818181818	5	0.879924288468896	1.50431752764733	1.64472049689441	1.42331581462016	1	1	0	ggctattttgagtcctccatCgtttaacaaagaaattctaa	6	8	1	2	rs187262258		TCGA-OR-A5KZ-01A-11D-A29I-10	TCGA-OR-A5KZ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d5d4c41b-6ff9-4b93-aea8-e6caef2209e1	4d364400-c9b7-492f-a193-1beeeb2b1d82	.	CNTN3-137	NM_020872	exon11	c.G1381A	p.D461N	CTCCATCGTTTAA	.	78	69	81	0	C|0.999;T|0.000	0	0	0	0	0	T	74385793	C	T	74385793	3	4	40	1	0	0	0	0	1	0	0	0	3648	884	31	1	1753	1	CNTN3	3	74385793	Missense_Mutation	SNP	C	TCGA-OR-A5KZ-01A-11D-A29I-10	24288680	74385793	123636637	18	8764										
VGLL3	389136	broad.mit.edu;bcgsc.ca	37	chr3	87027942	87027942	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0568181818181818	5	0.879924288468896	1.50431752764733	1.64472049689441	1.42331581462016	1	1	0	cctgcatcttgctgaataccGctaacttcttctgggatgga	9	11	3	1	novel		TCGA-OR-A5KZ-01A-11D-A29I-10	TCGA-OR-A5KZ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d5d4c41b-6ff9-4b93-aea8-e6caef2209e1	4d364400-c9b7-492f-a193-1beeeb2b1d82	.	VGLL3-90	NM_016206	exon2	c.C137T	p.A46V	AATACCGCTAACT	.	38	32	50	2	.	0	0	0	0	0	A	87027942	G	A	87027942	3	1	40	1	0	0	0	0	1	0	0	0	17198	1087	38	1	855	1	VGLL3	3	87027942	Missense_Mutation	SNP	G	TCGA-OR-A5KZ-01A-11D-A29I-10	12642149	87027942	110994488	19	8765										
ALG1L	200810	hgsc.bcm.edu	37	chr3	125648356	125648356	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0568181818181818	5	0.879924288468896	1.50431752764733	1.64472049689441	1.42331581462016	1	1	0	ctgctgcgactcccgcaggtTcttccaaaactggtttagct	9	13	1	0	rs3828357	byfrequency	TCGA-OR-A5KZ-01A-11D-A29I-10	TCGA-OR-A5KZ-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d5d4c41b-6ff9-4b93-aea8-e6caef2209e1	4d364400-c9b7-492f-a193-1beeeb2b1d82	.	ALG1L-90	NM_001195223	exon7	c.A463G	p.N155D	GCAGGTTCTTCCA	.	8	8	0	0	T|0.677;C|0.323	5	0	5	0	0	C	125648356	T	C	125648356	3	2	40	1	0	0	0	0	1	0	0	0	517	1783	62	4	164	4	ALG1L	3	125648356	Missense_Mutation	SNP	T	TCGA-OR-A5KZ-01A-11D-A29I-10	38620414	125648356	72374074	20	8766										
IGSF10	285313	broad.mit.edu	37	chr3	151155638	151155638	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0568181818181818	5	0.879924288468896	1.50431752764733	1.64472049689441	1.42331581462016	1	1	0	ctgtttgtatacagaccattGattaatggaggtttagagac	10	5	0	3	novel		TCGA-OR-A5KZ-01A-11D-A29I-10	TCGA-OR-A5KZ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d5d4c41b-6ff9-4b93-aea8-e6caef2209e1	4d364400-c9b7-492f-a193-1beeeb2b1d82	.	IGSF10-102	NM_178822	exon6	c.C6711A	p.I2237I	ACCATTGATTAAT	.	83	3	37	0	.	0	0	0	0	0	T	151155638	G	T	151155638	2	4	40	1	0	0	0	0	0	0	0	1	7618	1280	45	3		3	IGSF10	3	151155638	Silent	SNP	G	TCGA-OR-A5KZ-01A-11D-A29I-10	25507282	151155638	46866792	21	8767										
ZNF732	654254	hgsc.bcm.edu	37	chr4	289888	289888	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0568181818181818	5	0.879924288468896	1.50431752764733	1.64472049689441	1.42331581462016	1	1	0	ttctgctgggcagggtccagGcatttccactcttctggaga	12	11	3	1	novel		TCGA-OR-A5KZ-01A-11D-A29I-10	TCGA-OR-A5KZ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d5d4c41b-6ff9-4b93-aea8-e6caef2209e1	4d364400-c9b7-492f-a193-1beeeb2b1d82	.	ZNF732-22	NM_001137608	exon1	c.C57T	p.C19C	GTCCAGGCATTTC	.	110	6	95	0	.	25	25	0	0	0	A	289888	G	A	289888	2	1	40	1	0	0	0	0	0	0	0	1	18160	1195	42	3		3	ZNF732	4	289888	Silent	SNP	G	TCGA-OR-A5KZ-01A-11D-A29I-10		289888	190864388	22	8768										
CRIPAK	285464	hgsc.bcm.edu	37	chr4	1388755	1388755	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0568181818181818	5	0.879924288468896	1.50431752764733	1.64472049689441	1.42331581462016	1	1	0	cccgcctgctcacacgtgccCatgcggagtgcccgcctgct	11	19	1	0	rs141481663	byfrequency	TCGA-OR-A5KZ-01A-11D-A29I-10	TCGA-OR-A5KZ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d5d4c41b-6ff9-4b93-aea8-e6caef2209e1	4d364400-c9b7-492f-a193-1beeeb2b1d82	.	CRIPAK-90	NM_175918	exon1	c.C456G	p.P152P	CGTGCCCATGCGG	.	59	13	4	0	C|0.960;G|0.040	3	1	2	0	0	G	1388755	C	G	1388755	2	3	40	1	0	0	0	0	0	0	0	1	3883	581	21	3		3	CRIPAK	4	1388755	Silent	SNP	C	TCGA-OR-A5KZ-01A-11D-A29I-10	1098867	1388755	189765521	23	8769			1	41		3	3	113	N	C_A	5.021974e-08
CRIPAK	285464	ucsc.edu	37	chr4	1388850	1388850	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0568181818181818	5	0.879924288468896	1.50431752764733	1.64472049689441	1.42331581462016	1	1	0	cgcctgctcacacgtgccaaCgtggagtgcccgcctgatca	11	16	2	1	rs78729943	bycluster;byfrequency	TCGA-OR-A5KZ-01A-11D-A29I-10	TCGA-OR-A5KZ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d5d4c41b-6ff9-4b93-aea8-e6caef2209e1	4d364400-c9b7-492f-a193-1beeeb2b1d82	.	CRIPAK-90	NM_175918	exon1	c.C551T	p.T184M	TGCCAACGTGGAG	.	157	36	33	0	C|0.500;T|0.500	0	0	0	0	0	T	1388850	C	T	1388850	3	4	40	1	0	0	0	0	1	0	0	0	3883	536	19	1	553	1	CRIPAK	4	1388850	Missense_Mutation	SNP	C	TCGA-OR-A5KZ-01A-11D-A29I-10	95	1388850	189765426	24	8770			1	41		3	3	113	N	C_A	5.021974e-08
CRIPAK	285464	hgsc.bcm.edu;ucsc.edu	37	chr4	1388867	1388867	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0568181818181818	5	0.879924288468896	1.50431752764733	1.64472049689441	1.42331581462016	1	1	0	caacgtggagtgcccgcctgAtcacacgtgcccatgtggag	13	13	1	1	rs76058011	byfrequency	TCGA-OR-A5KZ-01A-11D-A29I-10	TCGA-OR-A5KZ-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d5d4c41b-6ff9-4b93-aea8-e6caef2209e1	4d364400-c9b7-492f-a193-1beeeb2b1d82	.	CRIPAK-90	NM_175918	exon1	c.A568C	p.I190L	CGCCTGATCACAC	.	145	30	37	0	A|0.994;C|0.006	12	1	11	0	0	C	1388867	A	C	1388867	3	2	40	1	0	0	0	0	1	0	0	0	3883	333	12	5	570	5	CRIPAK	4	1388867	Missense_Mutation	SNP	A	TCGA-OR-A5KZ-01A-11D-A29I-10	17	1388867	189765409	25	8771			1	41		3	3	113	N	C_A	5.021974e-08
NKD2	85409	hgsc.bcm.edu	37	chr5	1033568	1033569	+	Frame_Shift_Ins	INS	-	-	CCGCGAGGGC													0.0568181818181818	5	0.879924288468896	1.50431752764733	1.64472049689441	1.42331581462016	1	1	0	gacggagagagggcagcaaaINSccgcgagggcccgcgaggac					novel		TCGA-OR-A5KZ-01A-11D-A29I-10	TCGA-OR-A5KZ-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d5d4c41b-6ff9-4b93-aea8-e6caef2209e1	4d364400-c9b7-492f-a193-1beeeb2b1d82	.	NKD2-226	NM_001271082	exon5	c.284_285insCCGCGAGGGC	p.N95fs	CAGCAAACCGCGA	.	287	16	65	0	.	0	0	0	0	0	CCGCGAGGGC	1033569	-	CCGCGAGGGC	1033568	7	5	40	1	0	1	1	0	0	0	0	0	10471	43	2	0	302	0	NKD2	5	1033568	Frame_Shift_Ins	INS	-	TCGA-OR-A5KZ-01A-11D-A29I-10		1033568	179881692	26	8772										
TRIO	7204	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	14387852	14387852	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0568181818181818	5	0.879924288468896	1.50431752764733	1.64472049689441	1.42331581462016	1	1	0	attccacagagtaaaagtctCcagctagatatcattccagc	6	11	2	2	novel		TCGA-OR-A5KZ-01A-11D-A29I-10	TCGA-OR-A5KZ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d5d4c41b-6ff9-4b93-aea8-e6caef2209e1	4d364400-c9b7-492f-a193-1beeeb2b1d82	.	TRIO-562	NM_007118	exon23	c.C3777T	p.L1259L	AAGTCTCCAGCTA	.	126	48	119	0	.	0	0	0	0	0	T	14387852	C	T	14387852	2	4	40	1	0	0	0	0	0	0	0	1	16590	842	30	3		3	TRIO	5	14387852	Silent	SNP	C	TCGA-OR-A5KZ-01A-11D-A29I-10	13354284	14387852	166527408	27	8773										
SNCAIP	9627	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	121758644	121758644	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0568181818181818	5	0.879924288468896	1.50431752764733	1.64472049689441	1.42331581462016	1	1	0	aggaatcgctgatgtgtacaGtaagttccgcccagtgaagc	12	9	0	2	novel		TCGA-OR-A5KZ-01A-11D-A29I-10	TCGA-OR-A5KZ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d5d4c41b-6ff9-4b93-aea8-e6caef2209e1	4d364400-c9b7-492f-a193-1beeeb2b1d82	.	SNCAIP-92	NM_005460	exon4	c.G212T	p.S71I	TGTACAGTAAGTT	.	259	117	255	0	.	0	0	0	0	0	T	121758644	G	T	121758644	3	4	40	1	0	0	0	0	1	0	0	0	14876	1029	36	3	222	3	SNCAIP	5	121758644	Missense_Mutation	SNP	G	TCGA-OR-A5KZ-01A-11D-A29I-10	107370792	121758644	59156616	28	8774										
GNPDA1	10007	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	141382735	141382735	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.0568181818181818	5	0.879924288468896	1.50431752764733	1.64472049689441	1.42331581462016	1	1	0	acggtgcggggatgctgctgGaaggcagacacggtccacat	16	10	0	1	novel		TCGA-OR-A5KZ-01A-11D-A29I-10	TCGA-OR-A5KZ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d5d4c41b-6ff9-4b93-aea8-e6caef2209e1	4d364400-c9b7-492f-a193-1beeeb2b1d82	.	GNPDA1-90	NM_005471	exon6	c.C687G	p.F229L	CTGCTGGAAGGCA	.	184	92	176	0	.	13	4	9	0	0	C	141382735	G	C	141382735	3	2	40	1	0	0	0	0	1	0	0	0	6562	1165	41	3	190	3	GNPDA1	5	141382735	Missense_Mutation	SNP	G	TCGA-OR-A5KZ-01A-11D-A29I-10	19624091	141382735	39532525	29	8775										
HLA-B	3106	hgsc.bcm.edu	37	chr6	31324595	31324604	+	Frame_Shift_Del	DEL	CGGCTCCTCT	CGGCTCCTCT	-													0.0568181818181818	5	0.879924288468896	1.50431752764733	1.64472049689441	1.42331581462016	1	1	0	tgctctatccacggcgcccgCggctcctctctcggactcgc					rs151341122	alternate_allele	TCGA-OR-A5KZ-01A-11D-A29I-10	TCGA-OR-A5KZ-10A-01D-A29L-10	CGGCTCCTCT	CGGCTCCTCT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d5d4c41b-6ff9-4b93-aea8-e6caef2209e1	4d364400-c9b7-492f-a193-1beeeb2b1d82	.	HLA-B-90	NM_005514	exon2	c.204_213del	p.68_71del	CGCCCGCGGCTCC	.	97	0	22	0	.	0	0	0	0	0	-	31324604	CGGCTCCTCT	-	31324595	7	5	40	1	0	1	0	1	0	0	0	0	7217	755	27	0	899	0	HLA-B	6	31324595	Frame_Shift_Del	DEL	CGGCTCCTCT	TCGA-OR-A5KZ-01A-11D-A29I-10		31324595	139790472	30	8776										
GARS	2617	hgsc.bcm.edu	37	chr7	30634661	30634661	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0568181818181818	5	0.879924288468896	1.50431752764733	1.64472049689441	1.42331581462016	1	1	0	ccctcagcgcggcctcctgcCccccgatctccttgcccgcc	8	24	2	0	rs1049402	byfrequency	TCGA-OR-A5KZ-01A-11D-A29I-10	TCGA-OR-A5KZ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d5d4c41b-6ff9-4b93-aea8-e6caef2209e1	4d364400-c9b7-492f-a193-1beeeb2b1d82	.	GARS-91	NM_002047	exon1	c.C124G	p.P42A	TCCTGCCCCCCGA	.	10	10	0	0	C|0.329;G|0.671	25	0	25	0	0	G	30634661	C	G	30634661	3	3	40	1	0	0	0	0	1	0	0	0	6262	623	22	3	126	3	GARS	7	30634661	Missense_Mutation	SNP	C	TCGA-OR-A5KZ-01A-11D-A29I-10		30634661	128504002	31	8777										
EGFR	1956	broad.mit.edu;bcgsc.ca	37	chr7	55214349	55214349	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0568181818181818	5	0.879924288468896	1.50431752764733	1.64472049689441	1.42331581462016	1	1	0	acaaccctgccctgtgcaacGtggagagcatccagtggcgg	13	13	0	1	novel		TCGA-OR-A5KZ-01A-11D-A29I-10	TCGA-OR-A5KZ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d5d4c41b-6ff9-4b93-aea8-e6caef2209e1	4d364400-c9b7-492f-a193-1beeeb2b1d82	.	EGFR-44910	NM_005228	exon4	c.G475A	p.V159M	TGCAACGTGGAGA	.	222	16	116	0	.	1	1	0	0	0	A	55214349	G	A	55214349	3	1	40	1	0	0	0	0	1	0	0	0	4978	1145	40	1	489	1	EGFR	7	55214349	Missense_Mutation	SNP	G	TCGA-OR-A5KZ-01A-11D-A29I-10	24579688	55214349	103924314	32	8778										
SGCE	8910	hgsc.bcm.edu	37	chr7	94227276	94227276	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0568181818181818	5	0.879924288468896	1.50431752764733	1.64472049689441	1.42331581462016	1	1	0	ctgcagtgagccaagatcgcTccattgcactccagcctggg	11	14	0	2	rs10247562	byfrequency	TCGA-OR-A5KZ-01A-11D-A29I-10	TCGA-OR-A5KZ-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d5d4c41b-6ff9-4b93-aea8-e6caef2209e1	4d364400-c9b7-492f-a193-1beeeb2b1d82	.	SGCE-91	NM_001099401	exon10	c.A1294C	p.S432R	GATCGCTCCATTG	.	5	5	0	0	T|0.255;G|0.745	380	16	247	117	0	G	94227276	T	G	94227276	3	3	40	1	0	0	0	0	1	0	0	0	14237	1551	54	5	179	5	SGCE	7	94227276	Missense_Mutation	SNP	T	TCGA-OR-A5KZ-01A-11D-A29I-10	39012927	94227276	64911387	33	8779										
NOM1	64434	hgsc.bcm.edu	37	chr7	156742501	156742501	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0568181818181818	5	0.879924288468896	1.50431752764733	1.64472049689441	1.42331581462016	1	1	0	gacgcgtggtccgcatgaagCgcagaggcgggcgcgggccg	20	12	0	2	rs6969990	byfrequency	TCGA-OR-A5KZ-01A-11D-A29I-10	TCGA-OR-A5KZ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d5d4c41b-6ff9-4b93-aea8-e6caef2209e1	4d364400-c9b7-492f-a193-1beeeb2b1d82	.	NOM1-90	NM_138400	exon1	c.C70G	p.R24G	ATGAAGCGCAGAG	.	15	12	2	0	C|0.663;G|0.337	0	0	0	0	0	G	156742501	C	G	156742501	3	3	40	1	0	0	0	0	1	0	0	0	10559	768	27	2	72	2	NOM1	7	156742501	Missense_Mutation	SNP	C	TCGA-OR-A5KZ-01A-11D-A29I-10	62515225	156742501	2396162	34	8780										
NKX3-1	4824	hgsc.bcm.edu	37	chr8	23540249	23540249	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0568181818181818	5	0.879924288468896	1.50431752764733	1.64472049689441	1.42331581462016	1	1	0	tggctccggctccgggtcgcGctgtctctggctgctcgtgc	15	15	1	0	rs2228013	byfrequency	TCGA-OR-A5KZ-01A-11D-A29I-10	TCGA-OR-A5KZ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d5d4c41b-6ff9-4b93-aea8-e6caef2209e1	4d364400-c9b7-492f-a193-1beeeb2b1d82	.	NKX3-1-90	NM_006167	exon1	c.C154T	p.R52C	GGTCGCGCTGTCT	.	12	8	0	0	G|0.977;A|0.023	1	1	0	0	0	A	23540249	G	A	23540249	3	1	40	1	0	0	0	0	1	0	0	0	10484	1087	38	1	558	1	NKX3-1	8	23540249	Missense_Mutation	SNP	G	TCGA-OR-A5KZ-01A-11D-A29I-10		23540249	122823773	35	8781										
ST18	9705	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr8	53044607	53044607	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.0568181818181818	5	0.879924288468896	1.50431752764733	1.64472049689441	1.42331581462016	1	1	0	agctcttgtttgttcagtttCcaggagagggaggctccatt	12	8	2	1	novel		TCGA-OR-A5KZ-01A-11D-A29I-10	TCGA-OR-A5KZ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d5d4c41b-6ff9-4b93-aea8-e6caef2209e1	4d364400-c9b7-492f-a193-1beeeb2b1d82	.	ST18-95	NM_014682	exon22	c.G2577C	p.W859C	CAGTTTCCAGGAG	.	330	170	179	0	.	0	0	0	0	0	G	53044607	C	G	53044607	3	3	40	1	0	0	0	0	1	0	0	0	15249	856	30	3	586	3	ST18	8	53044607	Missense_Mutation	SNP	C	TCGA-OR-A5KZ-01A-11D-A29I-10	29504358	53044607	93319415	36	8782										
CRH	1392	hgsc.bcm.edu	37	chr8	67089425	67089425	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0568181818181818	5	0.879924288468896	1.50431752764733	1.64472049689441	1.42331581462016	1	1	0	gaagggcggctgccgctgccTccggcgaggagcgaggaggc	20	12	0	0	rs6159	byfrequency;by2hit2allele;by1000genomes	TCGA-OR-A5KZ-01A-11D-A29I-10	TCGA-OR-A5KZ-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d5d4c41b-6ff9-4b93-aea8-e6caef2209e1	4d364400-c9b7-492f-a193-1beeeb2b1d82	.	CRH-90	NM_000756	exon2	c.A288C	p.G96G	GCTGCCTCCGGCG	.	27	5	2	0	T|0.642;G|0.358	0	0	0	0	0	G	67089425	T	G	67089425	2	3	40	1	0	0	0	0	0	0	0	1	3875	1538	54	5		5	CRH	8	67089425	Silent	SNP	T	TCGA-OR-A5KZ-01A-11D-A29I-10	14044818	67089425	79274597	37	8783										
STAU2	27067	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr8	74464276	74464276	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.0568181818181818	5	0.879924288468896	1.50431752764733	1.64472049689441	1.42331581462016	1	1	0	ttgaatccttgctaaatattCcagttgttttgaaggttgta	8	5	0	2	novel		TCGA-OR-A5KZ-01A-11D-A29I-10	TCGA-OR-A5KZ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d5d4c41b-6ff9-4b93-aea8-e6caef2209e1	4d364400-c9b7-492f-a193-1beeeb2b1d82	.	STAU2-90	NM_001164380	exon13	c.G1501C	p.E501Q	AATATTCCAGTTG	.	257	48	160	1	.	18	16	2	0	0	G	74464276	C	G	74464276	3	3	40	1	0	0	0	0	1	0	0	0	15310	864	30	3	347	3	STAU2	8	74464276	Missense_Mutation	SNP	C	TCGA-OR-A5KZ-01A-11D-A29I-10	7374851	74464276	71899746	38	8784										
EPPK1	83481	broad.mit.edu;bcgsc.ca	37	chr8	144940435	144940435	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0568181818181818	5	0.879924288468896	1.50431752764733	1.64472049689441	1.42331581462016	1	1	0	atgccgtgctcccggacgatGaggtccttctgcatggcctg	13	13	1	1	novel		TCGA-OR-A5KZ-01A-11D-A29I-10	TCGA-OR-A5KZ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d5d4c41b-6ff9-4b93-aea8-e6caef2209e1	4d364400-c9b7-492f-a193-1beeeb2b1d82	.	EPPK1-25	NM_031308	exon1	c.C6987T	p.L2329L	GACGATGAGGTCC	.	977	64	204	1	.	1	1	0	0	0	A	144940435	G	A	144940435	2	1	40	1	0	0	0	0	0	0	0	1	5203	1277	45	3		3	EPPK1	8	144940435	Silent	SNP	G	TCGA-OR-A5KZ-01A-11D-A29I-10	70476159	144940435	1423587	39	8785										
PALM2-AKAP2	445815	bcgsc.ca	37	chr9	112898576	112898576	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0568181818181818	5	0.879924288468896	1.50431752764733	1.64472049689441	1.42331581462016	1	1	0	tcctggaatcacctctacccCacatcccatggaccatccct	4	19	2	0	rs151065500	byfrequency	TCGA-OR-A5KZ-01A-11D-A29I-10	TCGA-OR-A5KZ-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d5d4c41b-6ff9-4b93-aea8-e6caef2209e1	4d364400-c9b7-492f-a193-1beeeb2b1d82	.	PALM2-AKAP2-475	NM_007203	exon8	c.C752T	p.P251L	CTACCCCACATCC	.	209	7	152	2	C|0.993;T|0.007	1	1	0	0	0	T	112898576	C	T	112898576	3	4	40	1	0	0	0	0	1	0	0	0	11439	594	21	3	782	3	PALM2-AKAP2	9	112898576	Missense_Mutation	SNP	C	TCGA-OR-A5KZ-01A-11D-A29I-10		112898576	28314855	40	8786										
SVEP1	79987	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr9	113173641	113173641	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0568181818181818	5	0.879924288468896	1.50431752764733	1.64472049689441	1.42331581462016	1	1	0	tctttgctgaggtgttcagtAcaaagccttccatgcattta	8	9	2	1	novel		TCGA-OR-A5KZ-01A-11D-A29I-10	TCGA-OR-A5KZ-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d5d4c41b-6ff9-4b93-aea8-e6caef2209e1	4d364400-c9b7-492f-a193-1beeeb2b1d82	.	SVEP1-75	NM_153366	exon37	c.T6350A	p.V2117E	TTCAGTACAAAGC	.	101	34	66	0	.	2	1	1	0	0	T	113173641	A	T	113173641	3	4	40	1	0	0	0	0	1	0	0	0	15457	391	14	5	4413	5	SVEP1	9	113173641	Missense_Mutation	SNP	A	TCGA-OR-A5KZ-01A-11D-A29I-10	275065	113173641	28039790	41	8787										
ALAD	210	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	116154411	116154411	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0568181818181818	5	0.879924288468896	1.50431752764733	1.64472049689441	1.42331581462016	1	1	0	tctcctacctggccactcctGggaggctggtgataggctgt	13	12	1	1	novel		TCGA-OR-A5KZ-01A-11D-A29I-10	TCGA-OR-A5KZ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d5d4c41b-6ff9-4b93-aea8-e6caef2209e1	4d364400-c9b7-492f-a193-1beeeb2b1d82	.	ALAD-90	NM_000031	exon3	c.C152T	p.P51L	ACTCCTGGGAGGC	.	94	12	82	0	.	23	16	7	0	0	A	116154411	G	A	116154411	3	1	40	1	0	0	0	0	1	0	0	0	483	1348	47	3	880	3	ALAD	9	116154411	Missense_Mutation	SNP	G	TCGA-OR-A5KZ-01A-11D-A29I-10	2980770	116154411	25059020	42	8788										
ABCA2	20	ucsc.edu;bcgsc.ca	37	chr9	139918597	139918597	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0568181818181818	5	0.879924288468896	1.50431752764733	1.64472049689441	1.42331581462016	1	1	0	gcctcctgccgcactcacctTccttcacggagatggtgggc	11	16	2	1	novel		TCGA-OR-A5KZ-01A-11D-A29I-10	TCGA-OR-A5KZ-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d5d4c41b-6ff9-4b93-aea8-e6caef2209e1	4d364400-c9b7-492f-a193-1beeeb2b1d82	.	ABCA2-90	NM_212533	exon2	c.A248G	p.E83G	TCACCTTCCTTCA	.	357	329	196	3	.	0	0	0	0	0	C	139918597	T	C	139918597	3	2	40	1	0	0	0	0	1	0	0	0	32	1783	62	4	7345	4	ABCA2	9	139918597	Missense_Mutation	SNP	T	TCGA-OR-A5KZ-01A-11D-A29I-10	23764186	139918597	1294834	43	8789										
GPR158	57512	bcgsc.ca	37	chr10	25701341	25701341	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0568181818181818	5	0.879924288468896	1.50431752764733	1.64472049689441	1.42331581462016	1	1	0	tgccatcatctccttccaagCcctgtgtatgctgctcgact	7	15	2	0	rs2480345	byfrequency	TCGA-OR-A5KZ-01A-11D-A29I-10	TCGA-OR-A5KZ-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d5d4c41b-6ff9-4b93-aea8-e6caef2209e1	4d364400-c9b7-492f-a193-1beeeb2b1d82	.	GPR158-141	NM_020752	exon4	c.C1274G	p.A425G	TCCAAGCCCTGTG	.	151	6	141	0	C|0.433;G|0.567	0	0	0	0	0	G	25701341	C	G	25701341	3	3	40	1	0	0	0	0	1	0	0	0	6683	739	26	3	1288	3	GPR158	10	25701341	Missense_Mutation	SNP	C	TCGA-OR-A5KZ-01A-11D-A29I-10		25701341	109833406	44	8790										
RASGEF1A	221002	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr10	43698838	43698838	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0568181818181818	5	0.879924288468896	1.50431752764733	1.64472049689441	1.42331581462016	1	1	0	agggggcataaagacccgggAgctcaggagaaaggtgaaga	17	6	1	4	novel		TCGA-OR-A5KZ-01A-11D-A29I-10	TCGA-OR-A5KZ-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d5d4c41b-6ff9-4b93-aea8-e6caef2209e1	4d364400-c9b7-492f-a193-1beeeb2b1d82	.	RASGEF1A-227	NM_145313	exon3	c.T229A	p.S77T	CCCGGGAGCTCAG	.	285	35	195	0	.	0	0	0	0	0	T	43698838	A	T	43698838	3	4	40	1	0	0	0	0	1	0	0	0	13104	304	11	5	1260	5	RASGEF1A	10	43698838	Missense_Mutation	SNP	A	TCGA-OR-A5KZ-01A-11D-A29I-10	17997497	43698838	91835909	45	8791										
MAML2	84441	broad.mit.edu	37	chr11	95825374	95825374	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0568181818181818	5	0.879924288468896	1.50431752764733	1.64472049689441	1.42331581462016	1	1	0	tgttgctgctgctgctgctgTtgctgctgctgctgctgctg	14	11	0	0	rs112603485		TCGA-OR-A5KZ-01A-11D-A29I-10	TCGA-OR-A5KZ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d5d4c41b-6ff9-4b93-aea8-e6caef2209e1	4d364400-c9b7-492f-a193-1beeeb2b1d82	.	MAML2-850	NM_032427	exon2	c.A1821G	p.Q607Q	CTGCTGTTGCTGC	.	151	6	134	0	C|1.000;|0.000	5076	48	5021	2	5	C	95825374	T	C	95825374	2	2	40	1	0	0	0	0	0	0	0	1	9234	1722	60	4		4	MAML2	11	95825374	Silent	SNP	T	TCGA-OR-A5KZ-01A-11D-A29I-10		95825374	39181142	46	8792										
ATN1	1822	hgsc.bcm.edu	37	chr12	7045924	7045924	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0568181818181818	5	0.879924288468896	1.50431752764733	1.64472049689441	1.42331581462016	1	1	0	cagcagcagcagcagcagcaGcagcagcagcagcatcacgg	13	14	1	0	rs199988271	alternate_allele	TCGA-OR-A5KZ-01A-11D-A29I-10	TCGA-OR-A5KZ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d5d4c41b-6ff9-4b93-aea8-e6caef2209e1	4d364400-c9b7-492f-a193-1beeeb2b1d82	.	ATN1-139	NM_001007026	exon5	c.G1494T	p.Q498H	GCAGCAGCAGCAG	.	182	12	99	0	G|0.999;A|0.001	134	134	0	0	0	T	7045924	G	T	7045924	3	4	40	1	0	0	0	0	1	0	0	0	1112	962	34	3	1508	3	ATN1	12	7045924	Missense_Mutation	SNP	G	TCGA-OR-A5KZ-01A-11D-A29I-10		7045924	126805971	47	8793										
C1QL4	338761	hgsc.bcm.edu	37	chr12	49730135	49730135	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0568181818181818	5	0.879924288468896	1.50431752764733	1.64472049689441	1.42331581462016	1	1	0	acggaagcaggcgcgccgtcGggaccagggccacggggccc	18	15	0	0	rs146137821		TCGA-OR-A5KZ-01A-11D-A29I-10	TCGA-OR-A5KZ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d5d4c41b-6ff9-4b93-aea8-e6caef2209e1	4d364400-c9b7-492f-a193-1beeeb2b1d82	.	C1QL4-90	NM_001008223	exon1	c.C126G	p.P42P	GCCGTCGGGACCA	.	6	4	0	0	G|0.904;C|0.096	0	0	0	0	0	C	49730135	G	C	49730135	2	2	40	1	0	0	0	0	0	0	0	1	1967	1103	39	2		2	C1QL4	12	49730135	Silent	SNP	G	TCGA-OR-A5KZ-01A-11D-A29I-10	42684211	49730135	84121760	48	8794										
HOXC9	3225	hgsc.bcm.edu	37	chr12	54394284	54394284	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0568181818181818	5	0.879924288468896	1.50431752764733	1.64472049689441	1.42331581462016	1	1	0	gagccgctgtccggcgccgtCtccttccccagcttcccggc	11	20	1	0	rs34079606	byfrequency	TCGA-OR-A5KZ-01A-11D-A29I-10	TCGA-OR-A5KZ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d5d4c41b-6ff9-4b93-aea8-e6caef2209e1	4d364400-c9b7-492f-a193-1beeeb2b1d82	.	HOXC9-155	NM_006897	exon1	c.C312T	p.V104V	CGCCGTCTCCTTC	.	11	9	0	0	C|0.982;T|0.018	0	0	0	0	0	T	54394284	C	T	54394284	2	4	40	1	0	0	0	0	0	0	0	1	7338	900	32	3		3	HOXC9	12	54394284	Silent	SNP	C	TCGA-OR-A5KZ-01A-11D-A29I-10	4664149	54394284	79457611	49	8795										
HSP90B1	7184	broad.mit.edu	37	chr12	104332202	104332204	+	In_Frame_Del	DEL	GAA	GAA	-													0.0568181818181818	5	0.879924288468896	1.50431752764733	1.64472049689441	1.42331581462016	1	1	0	atgatgaagctgcagtagagGaagaagaagaagaaaagaaa					novel		TCGA-OR-A5KZ-01A-11D-A29I-10	TCGA-OR-A5KZ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d5d4c41b-6ff9-4b93-aea8-e6caef2209e1	4d364400-c9b7-492f-a193-1beeeb2b1d82	.	HSP90B1-93	NM_003299	exon7	c.940_942del	p.314_314del	GTAGAGGAAGAAG	.	228	8	135	0	.	0	0	0	0	0	-	104332204	GAA	-	104332202	7	5	40	1	0	1	0	1	0	0	0	0	7424	1175	41	0	966	0	HSP90B1	12	104332202	In_Frame_Del	DEL	GAA	TCGA-OR-A5KZ-01A-11D-A29I-10	49937918	104332202	29519693	50	8796										
ATXN2	6311	hgsc.bcm.edu	37	chr12	112036797	112036797	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0568181818181818	5	0.879924288468896	1.50431752764733	1.64472049689441	1.42331581462016	1	1	0	tgctgttgctgctgctgctgCtgctgctgctgctgctgctg	14	12	0	0	rs4098854		TCGA-OR-A5KZ-01A-11D-A29I-10	TCGA-OR-A5KZ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d5d4c41b-6ff9-4b93-aea8-e6caef2209e1	4d364400-c9b7-492f-a193-1beeeb2b1d82	.	ATXN2-136	NM_002973	exon1	c.G522A	p.Q174Q	CTGCTGCTGCTGC	.	6	6	0	0	C|0.429;T|0.571	141	131	10	0	0	T	112036797	C	T	112036797	2	4	40	1	0	0	0	0	0	0	0	1	1212	796	28	3		3	ATXN2	12	112036797	Silent	SNP	C	TCGA-OR-A5KZ-01A-11D-A29I-10	7704595	112036797	21815098	51	8797										
ING1	3621	hgsc.bcm.edu	37	chr13	111368316	111368316	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0568181818181818	5	0.879924288468896	1.50431752764733	1.64472049689441	1.42331581462016	1	1	0	gacagtttcaggccgcatctCtgctgacccgagggtggggc	15	12	2	1	rs9555726	byfrequency	TCGA-OR-A5KZ-01A-11D-A29I-10	TCGA-OR-A5KZ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d5d4c41b-6ff9-4b93-aea8-e6caef2209e1	4d364400-c9b7-492f-a193-1beeeb2b1d82	.	ING1-515	NM_005537	exon1	c.C526T	p.L176L	GCATCTCTGCTGA	.	11	11	0	0	C|0.372;T|0.628	1	0	1	0	0	T	111368316	C	T	111368316	2	4	40	1	0	0	0	0	0	0	0	1	7756	912	32	3		3	ING1	13	111368316	Silent	SNP	C	TCGA-OR-A5KZ-01A-11D-A29I-10		111368316	3801562	52	8798										
DAAM1	23002	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	59798591	59798591	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0568181818181818	5	0.879924288468896	1.50431752764733	1.64472049689441	1.42331581462016	1	1	0	caaaagtcttcaaaattctaGatcttgaagacctggaaaga	7	7	4	4	novel		TCGA-OR-A5KZ-01A-11D-A29I-10	TCGA-OR-A5KZ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d5d4c41b-6ff9-4b93-aea8-e6caef2209e1	4d364400-c9b7-492f-a193-1beeeb2b1d82	.	DAAM1-227	NM_001270520	exon15	c.G1921T	p.D641Y	ATTCTAGATCTTG	.	100	16	82	0	.	3	3	0	0	0	T	59798591	G	T	59798591	3	4	40	1	0	0	0	0	1	0	0	0	4221	942	33	3	1975	3	DAAM1	14	59798591	Missense_Mutation	SNP	G	TCGA-OR-A5KZ-01A-11D-A29I-10		59798591	47550949	53	8799										
SERPINA10	51156	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr14	94752476	94752476	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0568181818181818	5	0.879924288468896	1.50431752764733	1.64472049689441	1.42331581462016	1	1	0	ggagatttcttccagtagctGagagttcactaaggtcagca	11	8	3	2	novel		TCGA-OR-A5KZ-01A-11D-A29I-10	TCGA-OR-A5KZ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d5d4c41b-6ff9-4b93-aea8-e6caef2209e1	4d364400-c9b7-492f-a193-1beeeb2b1d82	.	SERPINA10-228	NM_001100607	exon4	c.C1112A	p.S371X	GTAGCTGAGAGTT	.	114	37	108	0	.	0	0	0	0	0	T	94752476	G	T	94752476	4	4	40	1	0	0	0	0	0	1	0	0	14122	1294	45	3	230	3	SERPINA10	14	94752476	Nonsense_Mutation	SNP	G	TCGA-OR-A5KZ-01A-11D-A29I-10	34953885	94752476	12597064	54	8800										
HHIPL1	84439	hgsc.bcm.edu	37	chr14	100141689	100141689	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0568181818181818	5	0.879924288468896	1.50431752764733	1.64472049689441	1.42331581462016	1	1	0	cgggcgcgtggaggtgttcgTgggcggacgctggggcaccg	22	10	0	0	rs7158073	byfrequency	TCGA-OR-A5KZ-01A-11D-A29I-10	TCGA-OR-A5KZ-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d5d4c41b-6ff9-4b93-aea8-e6caef2209e1	4d364400-c9b7-492f-a193-1beeeb2b1d82	.	HHIPL1-70	NM_001127258	exon9	c.T2075C	p.V692A	TGTTCGTGGGCGG	.	7	4	0	0	T|0.478;C|0.522	1	1	0	0	0	C	100141689	T	C	100141689	3	2	40	1	0	0	0	0	1	0	0	0	7114	1696	59	4	2210	4	HHIPL1	14	100141689	Missense_Mutation	SNP	T	TCGA-OR-A5KZ-01A-11D-A29I-10	5389213	100141689	7207851	55	8801										
LACTB	114294	hgsc.bcm.edu	37	chr15	63414083	63414083	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0568181818181818	5	0.879924288468896	1.50431752764733	1.64472049689441	1.42331581462016	1	1	0	gagacgccatgtaccggctcAtgtcagcagtgactgcccgg	13	13	2	2	rs34317102	byfrequency	TCGA-OR-A5KZ-01A-11D-A29I-10	TCGA-OR-A5KZ-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d5d4c41b-6ff9-4b93-aea8-e6caef2209e1	4d364400-c9b7-492f-a193-1beeeb2b1d82	.	LACTB-90	NM_171846	exon1	c.A13C	p.M5L	CGGCTCATGTCAG	.	8	8	0	0	A|0.226;C|0.774	0	0	0	0	0	C	63414083	A	C	63414083	3	2	40	1	0	0	0	0	1	0	0	0	8619	217	8	5	15	5	LACTB	15	63414083	Missense_Mutation	SNP	A	TCGA-OR-A5KZ-01A-11D-A29I-10		63414083	39117309	56	8802										
IFT140	9742	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	1642210	1642210	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0568181818181818	5	0.879924288468896	1.50431752764733	1.64472049689441	1.42331581462016	1	1	0	gacaaagaacaacagcccctCgtgagaccccatcttcagca	7	15	2	2	novel		TCGA-OR-A5KZ-01A-11D-A29I-10	TCGA-OR-A5KZ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d5d4c41b-6ff9-4b93-aea8-e6caef2209e1	4d364400-c9b7-492f-a193-1beeeb2b1d82	.	IFT140-95	NM_014714	exon6	c.G601T	p.E201X	GCCCCTCGTGAGA	.	162	53	135	1	.	2	1	1	0	0	A	1642210	C	A	1642210	4	1	40	1	0	0	0	0	0	1	0	0	7577	893	31	2	3891	2	IFT140	16	1642210	Nonsense_Mutation	SNP	C	TCGA-OR-A5KZ-01A-11D-A29I-10		1642210	88712543	57	8803										
ZNF598	90850	hgsc.bcm.edu	37	chr16	2049849	2049849	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0568181818181818	5	0.879924288468896	1.50431752764733	1.64472049689441	1.42331581462016	1	1	0	gagacggagcccgtggggcgTgtgctcagaagctcctgcag	17	11	1	2	rs12149722		TCGA-OR-A5KZ-01A-11D-A29I-10	TCGA-OR-A5KZ-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d5d4c41b-6ff9-4b93-aea8-e6caef2209e1	4d364400-c9b7-492f-a193-1beeeb2b1d82	.	ZNF598-432	NM_178167	exon11	c.A1701G	p.T567T	GGGGCGTGTGCTC	.	12	8	1	0	T|0.897;C|0.103	20	7	13	0	0	C	2049849	T	C	2049849	2	2	40	1	0	0	0	0	0	0	0	1	18065	1683	59	4		4	ZNF598	16	2049849	Silent	SNP	T	TCGA-OR-A5KZ-01A-11D-A29I-10	407639	2049849	88304904	58	8804										
MEFV	4210	hgsc.bcm.edu	37	chr16	3304573	3304573	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0568181818181818	5	0.879924288468896	1.50431752764733	1.64472049689441	1.42331581462016	1	1	0	tgcgcgtccaggccctccgaGgccttctctctgcgtttgct	11	16	2	0	rs224223	byfrequency	TCGA-OR-A5KZ-01A-11D-A29I-10	TCGA-OR-A5KZ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d5d4c41b-6ff9-4b93-aea8-e6caef2209e1	4d364400-c9b7-492f-a193-1beeeb2b1d82	.	MEFV-228	NM_000243	exon2	c.C495A	p.A165A	CTCCGAGGCCTTC	.	18	15	0	0	G|0.570;T|0.430	0	0	0	0	0	T	3304573	G	T	3304573	2	4	40	1	0	0	0	0	0	0	0	1	9487	987	35	3		3	MEFV	16	3304573	Silent	SNP	G	TCGA-OR-A5KZ-01A-11D-A29I-10	1254724	3304573	87050180	59	8805										
DNAH3	55567	broad.mit.edu	37	chr16	21011788	21011790	+	In_Frame_Del	DEL	AAG	AAG	-													0.0568181818181818	5	0.879924288468896	1.50431752764733	1.64472049689441	1.42331581462016	1	1	0	catggtctaagtaggttttcAagaagaaggactgccgggct					novel		TCGA-OR-A5KZ-01A-11D-A29I-10	TCGA-OR-A5KZ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d5d4c41b-6ff9-4b93-aea8-e6caef2209e1	4d364400-c9b7-492f-a193-1beeeb2b1d82	.	DNAH3-167	NM_017539	exon43	c.6177_6179del	p.2059_2060del	GTTTTCAAGAAGA	.	256	12	205	0	.	0	0	0	0	0	-	21011790	AAG	-	21011788	7	5	40	1	0	1	0	1	0	0	0	0	4614	131	5	0	6250	0	DNAH3	16	21011788	In_Frame_Del	DEL	AAG	TCGA-OR-A5KZ-01A-11D-A29I-10	17707215	21011788	69342965	60	8806										
IL4R	3566	broad.mit.edu	37	chr16	27370278	27370278	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0568181818181818	5	0.879924288468896	1.50431752764733	1.64472049689441	1.42331581462016	1	1	0	tcagattcccaacccagcccGcagccgcctcgtggctataa	8	17	1	1	rs55988941	byfrequency;alternate_allele	TCGA-OR-A5KZ-01A-11D-A29I-10	TCGA-OR-A5KZ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d5d4c41b-6ff9-4b93-aea8-e6caef2209e1	4d364400-c9b7-492f-a193-1beeeb2b1d82	.	IL4R-227	NM_000418	exon9	c.G812T	p.R271L	CAGCCCGCAGCCG	.	92	4	79	0	G|0.999;A|0.001	5	5	0	0	0	T	27370278	G	T	27370278	3	4	40	1	0	0	0	0	1	0	0	0	7719	1087	38	2	856	2	IL4R	16	27370278	Missense_Mutation	SNP	G	TCGA-OR-A5KZ-01A-11D-A29I-10	6358490	27370278	62984475	61	8807										
ZFPM1	161882	hgsc.bcm.edu	37	chr16	88599697	88599705	+	In_Frame_Del	DEL	AGCCTCTGG	AGCCTCTGG	-													0.0568181818181818	5	0.879924288468896	1.50431752764733	1.64472049689441	1.42331581462016	1	1	0	caacggagaggccagagcggAgcctctggcccagaatggag					novel		TCGA-OR-A5KZ-01A-11D-A29I-10	TCGA-OR-A5KZ-10A-01D-A29L-10	AGCCTCTGG	AGCCTCTGG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d5d4c41b-6ff9-4b93-aea8-e6caef2209e1	4d364400-c9b7-492f-a193-1beeeb2b1d82	.	ZFPM1-90	NM_153813	exon10	c.1331_1339del	p.444_447del	GAGCGGAGCCTCT	.	15	0	0	0	.	0	0	0	0	0	-	88599705	AGCCTCTGG	-	88599697	7	5	40	1	0	1	0	1	0	0	0	0	17694	304	11	0	1369	0	ZFPM1	16	88599697	In_Frame_Del	DEL	AGCCTCTGG	TCGA-OR-A5KZ-01A-11D-A29I-10	61229419	88599697	1755056	62	8808										
C17orf97	400566	hgsc.bcm.edu	37	chr17	260182	260182	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0568181818181818	5	0.879924288468896	1.50431752764733	1.64472049689441	1.42331581462016	1	1	0	tccgcgctgagagtcgccgaTtagtcggcatcgggcctcgg	15	13	0	1	rs7502594		TCGA-OR-A5KZ-01A-11D-A29I-10	TCGA-OR-A5KZ-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d5d4c41b-6ff9-4b93-aea8-e6caef2209e1	4d364400-c9b7-492f-a193-1beeeb2b1d82	.	C17orf97-91	NM_001013672	exon1	c.T49C	p.L17L	CGCCGATTAGTCG	.	17	17	0	0	T|0.657;C|0.343	0	0	0	0	0	C	260182	T	C	260182	2	2	40	1	0	0	0	0	0	0	0	1	1898	1490	52	4		4	C17orf97	17	260182	Silent	SNP	T	TCGA-OR-A5KZ-01A-11D-A29I-10		260182	80935028	63	8809										
GPS2	2874	bcgsc.ca	37	chr17	7217463	7217463	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0568181818181818	5	0.879924288468896	1.50431752764733	1.64472049689441	1.42331581462016	1	1	0	tgctggtatgcagctgatgtTagggtggtcaggtcactgga	16	6	2	1	rs11541855	byfrequency	TCGA-OR-A5KZ-01A-11D-A29I-10	TCGA-OR-A5KZ-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d5d4c41b-6ff9-4b93-aea8-e6caef2209e1	4d364400-c9b7-492f-a193-1beeeb2b1d82	.	GPS2-93	NM_004489	exon5	c.A333G	p.L111L	TGATGTTAGGGTG	.	146	8	156	1	T|0.476;C|0.524	77	77	0	0	0	C	7217463	T	C	7217463	2	2	40	1	0	0	0	0	0	0	0	1	6754	1741	61	4		4	GPS2	17	7217463	Silent	SNP	T	TCGA-OR-A5KZ-01A-11D-A29I-10	6957281	7217463	73977747	64	8810										
TP53	7157	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr17	7578378	7578392	+	In_Frame_Del	DEL	ATCTGAGCAGCGCTC	ATCTGAGCAGCGCTC	-													0.0568181818181818	5	0.879924288468896	1.50431752764733	1.64472049689441	1.42331581462016	1	1	0	cccagctgctcaccatcgctAtctgagcagcgctcatggtg					novel		TCGA-OR-A5KZ-01A-11D-A29I-10	TCGA-OR-A5KZ-10A-01D-A29L-10	ATCTGAGCAGCGCTC	ATCTGAGCAGCGCTC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d5d4c41b-6ff9-4b93-aea8-e6caef2209e1	4d364400-c9b7-492f-a193-1beeeb2b1d82	.	TP53-70225	NM_000546	exon5	c.538_552del	p.180_184del	ATCGCTATCTGAG	.	134	93	143	0	.	0	0	0	0	0	-	7578392	ATCTGAGCAGCGCTC	-	7578378	7	5	40	1	0	1	0	1	0	0	0	0	16419	446	16	0	746	0	TP53	17	7578378	In_Frame_Del	DEL	ATCTGAGCAGCGCTC	TCGA-OR-A5KZ-01A-11D-A29I-10	360915	7578378	73616832	65	8811										
NF1	4763	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr17	29554308	29554317	+	Frame_Shift_Del	DEL	AGGTATGCCC	AGGTATGCCC	-													0.0568181818181818	5	0.879924288468896	1.50431752764733	1.64472049689441	1.42331581462016	1	1	0	tcccactgcaggaaacactgAggtatgcccttagcaacaga					novel		TCGA-OR-A5KZ-01A-11D-A29I-10	TCGA-OR-A5KZ-10A-01D-A29L-10	AGGTATGCCC	AGGTATGCCC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d5d4c41b-6ff9-4b93-aea8-e6caef2209e1	4d364400-c9b7-492f-a193-1beeeb2b1d82	.	NF1-3353	NM_000267	exon19	c.2324_2325del	p.775_775del	ACACTGAGGTATG	.	66	38	86	0	.	0	0	0	0	0	-	29554317	AGGTATGCCC	-	29554308	7	5	40	1	0	1	0	1	0	0	0	0	10385	318	11	0	2459	0	NF1	17	29554308	Frame_Shift_Del	DEL	AGGTATGCCC	TCGA-OR-A5KZ-01A-11D-A29I-10	21975930	29554308	51640902	66	8812										
KRTAP4-8	728224	ucsc.edu	37	chr17	39254149	39254149	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0568181818181818	5	0.879924288468896	1.50431752764733	1.64472049689441	1.42331581462016	1	1	0	agcagctggggcgacagcagGtgggctggcagcacacagac	17	11	0	1	rs201246375		TCGA-OR-A5KZ-01A-11D-A29I-10	TCGA-OR-A5KZ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d5d4c41b-6ff9-4b93-aea8-e6caef2209e1	4d364400-c9b7-492f-a193-1beeeb2b1d82	.	.	NM_031960	exon1	c.C188G	p.T63S	CAGCAGGTGGGCT	.	70	14	62	2	.	0	0	0	0	0	C	39254149	G	C	39254149	3	2	40	1	0	0	0	0	1	0	0	0	8578	1261	44	3	373	3	KRTAP4-8	17	39254149	Missense_Mutation	SNP	G	TCGA-OR-A5KZ-01A-11D-A29I-10	9699841	39254149	41941061	67	8813										
MAP3K3	4215	bcgsc.ca	37	chr17	61771099	61771099	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.0568181818181818	5	0.879924288468896	1.50431752764733	1.64472049689441	1.42331581462016	1	1	0	gccagagaccttcagctgagGagctgctcacacaccacttt	9	14	2	2	novel		TCGA-OR-A5KZ-01A-11D-A29I-10	TCGA-OR-A5KZ-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d5d4c41b-6ff9-4b93-aea8-e6caef2209e1	4d364400-c9b7-492f-a193-1beeeb2b1d82	.	MAP3K3-979	NM_203351	exon17	c.G1936C	p.E646Q	GCTGAGGAGCTGC	.	102	5	80	1	.	4	4	0	0	0	C	61771099	G	C	61771099	3	2	40	1	0	0	0	0	1	0	0	0	9279	1175	41	3	2002	3	MAP3K3	17	61771099	Missense_Mutation	SNP	G	TCGA-OR-A5KZ-01A-11D-A29I-10	22516950	61771099	19424111	68	8814										
QRICH2	84074	bcgsc.ca	37	chr17	74288631	74288631	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0568181818181818	5	0.879924288468896	1.50431752764733	1.64472049689441	1.42331581462016	1	1	0	gttggaccaaaccatgctgaActgcaccaggttgagccaaa	10	11	0	2	novel		TCGA-OR-A5KZ-01A-11D-A29I-10	TCGA-OR-A5KZ-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d5d4c41b-6ff9-4b93-aea8-e6caef2209e1	4d364400-c9b7-492f-a193-1beeeb2b1d82	.	QRICH2-94	NM_032134	exon4	c.T1679A	p.V560D	TGCTGAACTGCAC	.	416	22	410	0	.	0	0	0	0	0	T	74288631	A	T	74288631	3	4	40	1	0	0	0	0	1	0	0	0	12915	43	2	5	3376	5	QRICH2	17	74288631	Missense_Mutation	SNP	A	TCGA-OR-A5KZ-01A-11D-A29I-10	12517532	74288631	6906579	69	8815										
GAA	2548	bcgsc.ca	37	chr17	78083791	78083791	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0568181818181818	5	0.879924288468896	1.50431752764733	1.64472049689441	1.42331581462016	1	1	0	gccgggagctacaggccctaCgacgagggtctgcggagggg	19	11	1	0	rs1800305	byfrequency	TCGA-OR-A5KZ-01A-11D-A29I-10	TCGA-OR-A5KZ-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d5d4c41b-6ff9-4b93-aea8-e6caef2209e1	4d364400-c9b7-492f-a193-1beeeb2b1d82	.	GAA-91	NM_001079803	exon10	c.C1374T	p.Y458Y	GCCCTACGACGAG	.	153	9	147	1	C|0.902;T|0.098	29	29	0	0	0	T	78083791	C	T	78083791	2	4	40	1	0	0	0	0	0	0	0	1	6166	547	19	1		1	GAA	17	78083791	Silent	SNP	C	TCGA-OR-A5KZ-01A-11D-A29I-10	3795160	78083791	3111419	70	8816										
UTS2R	2837	broad.mit.edu	37	chr17	80333066	80333066	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0568181818181818	5	0.879924288468896	1.50431752764733	1.64472049689441	1.42331581462016	1	1	0	gtaccaccaggccccgctggCgccgcggacggcgcgcatcg	15	18	0	0	novel		TCGA-OR-A5KZ-01A-11D-A29I-10	TCGA-OR-A5KZ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d5d4c41b-6ff9-4b93-aea8-e6caef2209e1	4d364400-c9b7-492f-a193-1beeeb2b1d82	.	UTS2R-153	NM_018949	exon1	c.C866A	p.A289E	CGCTGGCGCCGCG	.	149	14	47	2	.	0	0	0	0	0	A	80333066	C	A	80333066	3	1	40	1	0	0	0	0	1	0	0	0	17144	768	27	2	868	2	UTS2R	17	80333066	Missense_Mutation	SNP	C	TCGA-OR-A5KZ-01A-11D-A29I-10	2249275	80333066	862144	71	8817										
C18orf25	147339	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr18	43796373	43796373	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0568181818181818	5	0.879924288468896	1.50431752764733	1.64472049689441	1.42331581462016	1	1	0	caaggttaaaggtcatcggaGccaaaagcacaaggagagga	13	7	1	1	novel		TCGA-OR-A5KZ-01A-11D-A29I-10	TCGA-OR-A5KZ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d5d4c41b-6ff9-4b93-aea8-e6caef2209e1	4d364400-c9b7-492f-a193-1beeeb2b1d82	.	C18orf25-515	NM_145055	exon2	c.G527A	p.S176N	ATCGGAGCCAAAA	.	168	154	161	1	.	5	1	4	0	0	A	43796373	G	A	43796373	3	1	40	1	0	0	0	0	1	0	0	0	1905	971	34	3	529	3	C18orf25	18	43796373	Missense_Mutation	SNP	G	TCGA-OR-A5KZ-01A-11D-A29I-10		43796373	34280875	72	8818										
TCF3	6929	hgsc.bcm.edu	37	chr19	1619339	1619339	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0568181818181818	5	0.879924288468896	1.50431752764733	1.64472049689441	1.42331581462016	1	1	0	cctgcgtgccgcccgcccagTgacatggggccggtgaaacc	14	16	0	2	rs8140	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-OR-A5KZ-01A-11D-A29I-10	TCGA-OR-A5KZ-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d5d4c41b-6ff9-4b93-aea8-e6caef2209e1	4d364400-c9b7-492f-a193-1beeeb2b1d82	.	TCF3-721	NM_003200	exon15	c.A1302G	p.S434S	GCCCAGTGACATG	.	14	4	0	0	T|0.403;C|0.597	18	18	0	0	0	C	1619339	T	C	1619339	2	2	40	1	0	0	0	0	0	0	0	1	15731	1683	59	4		4	TCF3	19	1619339	Silent	SNP	T	TCGA-OR-A5KZ-01A-11D-A29I-10		1619339	57509644	73	8819										
PTPRS	5802	hgsc.bcm.edu	37	chr19	5222831	5222831	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0568181818181818	5	0.879924288468896	1.50431752764733	1.64472049689441	1.42331581462016	1	1	0	gcagcgtgagcgcgttctccGcgcccggctcagccgctgcc	14	18	2	1	rs2230610	byfrequency	TCGA-OR-A5KZ-01A-11D-A29I-10	TCGA-OR-A5KZ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d5d4c41b-6ff9-4b93-aea8-e6caef2209e1	4d364400-c9b7-492f-a193-1beeeb2b1d82	.	PTPRS-357	NM_002850	exon18	c.C2972T	p.A991V	TTCTCCGCGCCCG	.	15	9	0	0	G|0.979;A|0.021	6	4	2	0	0	A	5222831	G	A	5222831	3	1	40	1	0	0	0	0	1	0	0	0	12846	1087	38	1	2958	1	PTPRS	19	5222831	Missense_Mutation	SNP	G	TCGA-OR-A5KZ-01A-11D-A29I-10	3603492	5222831	53906152	74	8820										
MAP1S	55201	hgsc.bcm.edu	37	chr19	17837425	17837425	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0568181818181818	5	0.879924288468896	1.50431752764733	1.64472049689441	1.42331581462016	1	1	0	cgccgagcgcacgctggcctCtgtgtgcgccctgctggtgt	15	15	1	0	rs17710707	byfrequency	TCGA-OR-A5KZ-01A-11D-A29I-10	TCGA-OR-A5KZ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d5d4c41b-6ff9-4b93-aea8-e6caef2209e1	4d364400-c9b7-492f-a193-1beeeb2b1d82	.	MAP1S-90	NM_018174	exon5	c.C1232G	p.S411C	TGGCCTCTGTGTG	.	16	10	0	0	C|0.883;G|0.117	7	2	5	0	0	G	17837425	C	G	17837425	3	3	40	1	0	0	0	0	1	0	0	0	9262	913	32	3	1250	3	MAP1S	19	17837425	Missense_Mutation	SNP	C	TCGA-OR-A5KZ-01A-11D-A29I-10	12614594	17837425	41291558	75	8821										
FBXO17	115290	hgsc.bcm.edu	37	chr19	39440918	39440918	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0568181818181818	5	0.879924288468896	1.50431752764733	1.64472049689441	1.42331581462016	1	1	0	agcgcgtccagggccagggaTgggtccgccggcagccgtcg	18	14	0	0	rs2304117	byfrequency	TCGA-OR-A5KZ-01A-11D-A29I-10	TCGA-OR-A5KZ-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d5d4c41b-6ff9-4b93-aea8-e6caef2209e1	4d364400-c9b7-492f-a193-1beeeb2b1d82	.	FBXO17-226	NM_148169	exon2	c.A69G	p.P23P	CAGGGATGGGTCC	.	9	8	0	0	T|0.545;C|0.455	12	0	12	0	0	C	39440918	T	C	39440918	2	2	40	1	0	0	0	0	0	0	0	1	5749	1451	51	4		4	FBXO17	19	39440918	Silent	SNP	T	TCGA-OR-A5KZ-01A-11D-A29I-10	21603493	39440918	19688065	76	8822										
PPM1N	147699	hgsc.bcm.edu	37	chr19	46002368	46002368	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0568181818181818	5	0.879924288468896	1.50431752764733	1.64472049689441	1.42331581462016	1	1	0	ggaacgcgagcgcatccacgCcgctggcggcaccatccgcc	13	18	0	0	novel		TCGA-OR-A5KZ-01A-11D-A29I-10	TCGA-OR-A5KZ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d5d4c41b-6ff9-4b93-aea8-e6caef2209e1	4d364400-c9b7-492f-a193-1beeeb2b1d82	.	.	NM_001080401	exon1	c.C638T	p.A213V	TCCACGCCGCTGG	.	8	6	0	0	.	0	0	0	0	0	T	46002368	C	T	46002368	3	4	40	1	0	0	0	0	1	0	0	0	12378	739	26	3	640	3	PPM1N	19	46002368	Missense_Mutation	SNP	C	TCGA-OR-A5KZ-01A-11D-A29I-10	6561450	46002368	13126615	77	8823										
GLTSCR1	29998	hgsc.bcm.edu	37	chr19	48184474	48184474	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0568181818181818	5	0.879924288468896	1.50431752764733	1.64472049689441	1.42331581462016	1	1	0	agatcgtcctggggcagccgCcctctgccacccccacggcc	11	20	1	1	rs3745762		TCGA-OR-A5KZ-01A-11D-A29I-10	TCGA-OR-A5KZ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d5d4c41b-6ff9-4b93-aea8-e6caef2209e1	4d364400-c9b7-492f-a193-1beeeb2b1d82	.	GLTSCR1-48	NM_015711	exon6	c.C2047T	p.P683S	CAGCCGCCCTCTG	.	10	10	0	0	C|0.684;T|0.316	2	0	2	0	0	T	48184474	C	T	48184474	3	4	40	1	0	0	0	0	1	0	0	0	6494	739	26	3	2061	3	GLTSCR1	19	48184474	Missense_Mutation	SNP	C	TCGA-OR-A5KZ-01A-11D-A29I-10	2182106	48184474	10944509	78	8824										
PANK2	80025	hgsc.bcm.edu	37	chr20	3870124	3870124	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0568181818181818	5	0.879924288468896	1.50431752764733	1.64472049689441	1.42331581462016	1	1	0	actgctgctgcggatgggagGgggccggctcggcgcgccca	19	13	0	0	rs3737084	byfrequency	TCGA-OR-A5KZ-01A-11D-A29I-10	TCGA-OR-A5KZ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d5d4c41b-6ff9-4b93-aea8-e6caef2209e1	4d364400-c9b7-492f-a193-1beeeb2b1d82	.	PANK2-115	NM_153638	exon1	c.G377C	p.G126A	TGGGAGGGGGCCG	.	8	8	0	0	G|0.122;C|0.878	2	0	2	0	0	C	3870124	G	C	3870124	3	2	40	1	0	0	0	0	1	0	0	0	11446	1232	43	3	379	3	PANK2	20	3870124	Missense_Mutation	SNP	G	TCGA-OR-A5KZ-01A-11D-A29I-10		3870124	59155396	79	8825										
CEBPB	1051	hgsc.bcm.edu;broad.mit.edu	37	chr20	48807902	48807902	+	Frame_Shift_Del	DEL	C	C	-													0.0568181818181818	5	0.879924288468896	1.50431752764733	1.64472049689441	1.42331581462016	1	1	0	cgcccccgcgcccgcctcctCcgggcagcaccacgacttcc					novel		TCGA-OR-A5KZ-01A-11D-A29I-10	TCGA-OR-A5KZ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d5d4c41b-6ff9-4b93-aea8-e6caef2209e1	4d364400-c9b7-492f-a193-1beeeb2b1d82	.	CEBPB-226	NM_005194	exon1	c.332delC	p.S111fs	CCTCCTCCGGGCA	.	53	18	15	0	.	0	0	0	0	0	-	48807902	C	-	48807902	7	5	40	1	0	1	0	1	0	0	0	0	3206	855	30	0	334	0	CEBPB	20	48807902	Frame_Shift_Del	DEL	C	TCGA-OR-A5KZ-01A-11D-A29I-10	44937778	48807902	14217618	80	8826										
HSPA13	6782	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr21	15750609	15750609	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0568181818181818	5	0.879924288468896	1.50431752764733	1.64472049689441	1.42331581462016	1	1	0	cagcattggcaactggcattCcaagatatgcctctgccatt	8	12	1	1	novel		TCGA-OR-A5KZ-01A-11D-A29I-10	TCGA-OR-A5KZ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d5d4c41b-6ff9-4b93-aea8-e6caef2209e1	4d364400-c9b7-492f-a193-1beeeb2b1d82	.	HSPA13-226	NM_006948	exon3	c.G491A	p.G164E	GGCATTCCAAGAT	.	73	44	55	0	.	15	8	7	0	0	T	15750609	C	T	15750609	3	4	40	1	0	0	0	0	1	0	0	0	7427	855	30	3	936	3	HSPA13	21	15750609	Missense_Mutation	SNP	C	TCGA-OR-A5KZ-01A-11D-A29I-10		15750609	32379286	81	8827										
EIF4ENIF1	56478	bcgsc.ca	37	chr22	31838085	31838085	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0568181818181818	5	0.879924288468896	1.50431752764733	1.64472049689441	1.42331581462016	1	1	0	cgatcggcactgggtacagaGctggatgacaggaggttttc	15	8	0	2	rs5997988	byfrequency	TCGA-OR-A5KZ-01A-11D-A29I-10	TCGA-OR-A5KZ-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d5d4c41b-6ff9-4b93-aea8-e6caef2209e1	4d364400-c9b7-492f-a193-1beeeb2b1d82	.	EIF4ENIF1-91	NM_019843	exon17	c.C2226T	p.S742S	TACAGAGCTGGAT	.	137	7	109	0	G|0.611;A|0.389	8	8	0	0	0	A	31838085	G	A	31838085	2	1	40	1	0	0	0	0	0	0	0	1	5048	962	34	3		3	EIF4ENIF1	22	31838085	Silent	SNP	G	TCGA-OR-A5KZ-01A-11D-A29I-10		31838085	19466481	82	8828										
ACO2	50	bcgsc.ca	37	chr22	41903813	41903813	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0568181818181818	5	0.879924288468896	1.50431752764733	1.64472049689441	1.42331581462016	1	1	0	agactgaaccggccgctgacActctcggagaagattgtgta	12	10	1	5	rs137831	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-OR-A5KZ-01A-11D-A29I-10	TCGA-OR-A5KZ-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d5d4c41b-6ff9-4b93-aea8-e6caef2209e1	4d364400-c9b7-492f-a193-1beeeb2b1d82	.	ACO2-290	NM_001098	exon3	c.A192C	p.T64T	GCTGACACTCTCG	.	287	16	262	11	A|0.669;C|0.331	20	20	0	0	0	C	41903813	A	C	41903813	2	2	40	1	0	0	0	0	0	0	0	1	147	146	6	5		5	ACO2	22	41903813	Silent	SNP	A	TCGA-OR-A5KZ-01A-11D-A29I-10	10065728	41903813	9400753	83	8829										
MAGEB16	139604	bcgsc.ca	37	chrX	35821127	35821127	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0568181818181818	5	0.879924288468896	1.50431752764733	1.64472049689441	1.42331581462016	1	1	0	tggccaacagtgatcctgcaCgatatgaattcctgtggggc	12	10	0	2	rs4829392	byfrequency	TCGA-OR-A5KZ-01A-11D-A29I-10	TCGA-OR-A5KZ-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d5d4c41b-6ff9-4b93-aea8-e6caef2209e1	4d364400-c9b7-492f-a193-1beeeb2b1d82	.	MAGEB16-66	NM_001099921	exon2	c.C814T	p.R272X	CCTGCACGATATG	.	210	7	175	2	C|0.355;0|0.042	0	0	0	0	0	T	35821127	C	T	35821127	4	4	40	1	0	0	0	0	0	1	0	0	9202	528	19	1	816	1	MAGEB16	23	35821127	Nonsense_Mutation	SNP	C	TCGA-OR-A5KZ-01A-11D-A29I-10		35821127	119449433	84	8830										
TCEAL6	158931	broad.mit.edu	37	chrX	101396073	101396074	+	Frame_Shift_Ins	INS	-	-	T													0.0568181818181818	5	0.879924288468896	1.50431752764733	1.64472049689441	1.42331581462016	1	1	0	gcttgccctcgccttgtggcINSttgccctcaccttcggactt					novel		TCGA-OR-A5KZ-01A-11D-A29I-10	TCGA-OR-A5KZ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d5d4c41b-6ff9-4b93-aea8-e6caef2209e1	4d364400-c9b7-492f-a193-1beeeb2b1d82	.	TCEAL6-91	NM_001006938	exon3	c.231_232insA	p.K77fs	TTGTGGCTTGCCC	.	143	8	87	0	.	0	0	0	0	0	T	101396074	-	T	101396073	7	5	40	1	0	1	1	0	0	0	0	0	15712	796	28	0	324	0	TCEAL6	23	101396073	Frame_Shift_Ins	INS	-	TCGA-OR-A5KZ-01A-11D-A29I-10	65574946	101396073	53874487	85	8831										
CT45A5	441521	bcgsc.ca	37	chrX	134948034	134948034	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0568181818181818	5	0.879924288468896	1.50431752764733	1.64472049689441	1.42331581462016	1	1	0	ccagagaaattgctggtaacAtttcctcccacaggtgcatt	8	11	0	1	rs2034920	byfrequency	TCGA-OR-A5KZ-01A-11D-A29I-10	TCGA-OR-A5KZ-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d5d4c41b-6ff9-4b93-aea8-e6caef2209e1	4d364400-c9b7-492f-a193-1beeeb2b1d82	.	CT45A5-44	NM_001007551	exon3	c.T291C	p.N97N	GGTAACATTTCCT	.	105	8	99	0	0|0.004;T|0.049	0	0	0	0	0	G	134948034	A	G	134948034	2	3	40	1	0	0	0	0	0	0	0	1	3994	214	8	4		4	CT45A5	23	134948034	Silent	SNP	A	TCGA-OR-A5KZ-01A-11D-A29I-10	33551961	134948034	20322526	86	8832										
ARHGAP4	393	bcgsc.ca	37	chrX	153176254	153176254	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0568181818181818	5	0.879924288468896	1.50431752764733	1.64472049689441	1.42331581462016	1	1	0	ccggccaccgagtccaggtcAtgggcagtgcagccctccac	12	17	1	0	rs2070097	byfrequency	TCGA-OR-A5KZ-01A-11D-A29I-10	TCGA-OR-A5KZ-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d5d4c41b-6ff9-4b93-aea8-e6caef2209e1	4d364400-c9b7-492f-a193-1beeeb2b1d82	.	ARHGAP4-227	NM_001164741	exon16	c.T1836C	p.H612H	CAGGTCATGGGCA	.	36	4	40	0	A|0.354;G|0.646	16	16	0	0	0	G	153176254	A	G	153176254	2	3	40	1	0	0	0	0	0	0	0	1	885	214	8	4		4	ARHGAP4	23	153176254	Silent	SNP	A	TCGA-OR-A5KZ-01A-11D-A29I-10	18228220	153176254	2094306	87	8833										
PLXNA3	55558	bcgsc.ca	37	chrX	153694334	153694334	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0568181818181818	5	0.879924288468896	1.50431752764733	1.64472049689441	1.42331581462016	1	1	0	cgggtcaccatcgtgggtgaCaacctgggcctcttgtcccg	13	14	2	1	rs5945430	byfrequency	TCGA-OR-A5KZ-01A-11D-A29I-10	TCGA-OR-A5KZ-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d5d4c41b-6ff9-4b93-aea8-e6caef2209e1	4d364400-c9b7-492f-a193-1beeeb2b1d82	.	PLXNA3-132	NM_017514	exon14	c.C2589G	p.D863E	GGGTGACAACCTG	.	196	6	164	0	C|0.625;G|0.375	8	8	0	0	0	G	153694334	C	G	153694334	3	3	40	1	0	0	0	0	1	0	0	0	12150	477	17	3	2639	3	PLXNA3	23	153694334	Missense_Mutation	SNP	C	TCGA-OR-A5KZ-01A-11D-A29I-10	518080	153694334	1576226	88	8834										
ATAD3B	83858	bcgsc.ca	37	chr1	1431165	1431165	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0149253731343284	1	1	0.363883847549909	2.63815789473684	0	1	1	0	tgtcttgtggtggcggtcggCcgttctgccccccagggcac	15	14	2	0	rs9792879		TCGA-OR-A5L1-01A-11D-A30A-10	TCGA-OR-A5L1-10A-01D-A30A-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ec61f9a9-1d55-4395-975b-9dae30944df4	b0f55c34-a9e1-49b6-9835-fa1825bfe350	.	ATAD3B-44	NM_031921	exon16	c.C1915T	p.P639S	GGTCGGCCGTTCT	.	45	4	63	0	C|0.782;T|0.218	0	0	0	0	0	T	1431165	C	T	1431165	3	4	41	1	0	0	0	0	1	0	0	0	1075	739	26	3	1977	3	ATAD3B	1	1431165	Missense_Mutation	SNP	C	TCGA-OR-A5L1-01A-11D-A30A-10		1431165	247819456	1	8835										
ARHGEF16	27237	bcgsc.ca	37	chr1	3395039	3395039	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0149253731343284	1	1	0.363883847549909	2.63815789473684	0	1	1	0	cagatgaaccacatccaggtGgagaagatagagccgtctga	12	9	1	6	rs10797395	byfrequency	TCGA-OR-A5L1-01A-11D-A30A-10	TCGA-OR-A5L1-10A-01D-A30A-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ec61f9a9-1d55-4395-975b-9dae30944df4	b0f55c34-a9e1-49b6-9835-fa1825bfe350	.	ARHGEF16-228	NM_014448	exon12	c.G1677A	p.V559V	CCAGGTGGAGAAG	.	602	13	726	5	G|0.281;A|0.719	0	0	0	0	0	A	3395039	G	A	3395039	2	1	41	1	0	0	0	0	0	0	0	1	899	1335	47	3		3	ARHGEF16	1	3395039	Silent	SNP	G	TCGA-OR-A5L1-01A-11D-A30A-10	1963874	3395039	245855582	2	8836										
AMPD2	271	bcgsc.ca	37	chr1	110170896	110170896	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0149253731343284	1	1	0.363883847549909	2.63815789473684	0	1	1	0	gtggacacgctggatgtgcaTgcggtctgtgccagtggcgt	17	9	1	0	rs863978	byfrequency	TCGA-OR-A5L1-01A-11D-A30A-10	TCGA-OR-A5L1-10A-01D-A30A-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ec61f9a9-1d55-4395-975b-9dae30944df4	b0f55c34-a9e1-49b6-9835-fa1825bfe350	.	AMPD2-292	NM_001257360	exon11	c.T1434C	p.H478H	TGTGCATGCGGTC	.	148	6	147	1	T|0.265;C|0.735	0	0	0	0	0	C	110170896	T	C	110170896	2	2	41	1	0	0	0	0	0	0	0	1	586	1461	51	4		4	AMPD2	1	110170896	Silent	SNP	T	TCGA-OR-A5L1-01A-11D-A30A-10	106775857	110170896	139079725	3	8837										
HIST2H2AB	317772	broad.mit.edu	37	chr1	149859428	149859428	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0149253731343284	1	1	0.363883847549909	2.63815789473684	0	1	1	0	gacgagcgcgacttggccttAgcgcgggccttgcctccctg	14	15	0	0	novel		TCGA-OR-A5L1-01A-11D-A30A-10	TCGA-OR-A5L1-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ec61f9a9-1d55-4395-975b-9dae30944df4	b0f55c34-a9e1-49b6-9835-fa1825bfe350	.	HIST2H2AB-154	NM_175065	exon1	c.T39C	p.A13A	GGCCTTAGCGCGG	.	117	5	104	0	.	0	0	0	0	0	G	149859428	A	G	149859428	2	3	41	1	0	0	0	0	0	0	0	1	7198	407	15	4		4	HIST2H2AB	1	149859428	Silent	SNP	A	TCGA-OR-A5L1-01A-11D-A30A-10	39688532	149859428	99391193	4	8838										
PGLYRP4	57115	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	153309754	153309754	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0149253731343284	1	1	0.363883847549909	2.63815789473684	0	1	1	0	cccaccccttcataaatggcGccatcctggcccaccaggaa	7	18	1	0	rs184556258		TCGA-OR-A5L1-01A-11D-A30A-10	TCGA-OR-A5L1-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ec61f9a9-1d55-4395-975b-9dae30944df4	b0f55c34-a9e1-49b6-9835-fa1825bfe350	.	PGLYRP4-94	NM_020393	exon8	c.C846T	p.G282G	AATGGCGCCATCC	.	63	56	66	1	G|0.999;A|0.000	0	0	0	0	0	A	153309754	G	A	153309754	2	1	41	1	0	0	0	0	0	0	0	1	11825	1074	38	1		1	PGLYRP4	1	153309754	Silent	SNP	G	TCGA-OR-A5L1-01A-11D-A30A-10	3450326	153309754	95940867	5	8839										
WDR33	55339	broad.mit.edu	37	chr2	128471416	128471416	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0149253731343284	1	1	0.363883847549909	2.63815789473684	0	1	1	0	cttgtcagggtggaagtcatCtggtctgctgaagtcatcgg	14	8	5	1	rs145331578	byfrequency	TCGA-OR-A5L1-01A-11D-A30A-10	TCGA-OR-A5L1-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ec61f9a9-1d55-4395-975b-9dae30944df4	b0f55c34-a9e1-49b6-9835-fa1825bfe350	.	WDR33-90	NM_018383	exon18	c.G3049C	p.D1017H	AGTCATCTGGTCT	.	96	3	111	2	C|1.000;G|0.000	0	0	0	0	0	G	128471416	C	G	128471416	3	3	41	1	0	0	0	0	1	0	0	0	17325	913	32	3	981	3	WDR33	2	128471416	Missense_Mutation	SNP	C	TCGA-OR-A5L1-01A-11D-A30A-10		128471416	114727957	6	8840										
TLK1	9874	bcgsc.ca	37	chr2	171850329	171850329	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0149253731343284	1	1	0.363883847549909	2.63815789473684	0	1	1	0	gaagaagggggtgtaggggaTgctgtcagcccagccatgtg	18	7	1	1	rs3731993	byfrequency	TCGA-OR-A5L1-01A-11D-A30A-10	TCGA-OR-A5L1-10A-01D-A30A-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ec61f9a9-1d55-4395-975b-9dae30944df4	b0f55c34-a9e1-49b6-9835-fa1825bfe350	.	TLK1-439	NM_012290	exon21	c.A2262C	p.A754A	AGGGGATGCTGTC	.	181	6	208	0	T|0.951;G|0.049	0	0	0	0	0	G	171850329	T	G	171850329	2	3	41	1	0	0	0	0	0	0	0	1	15980	1451	51	5		5	TLK1	2	171850329	Silent	SNP	T	TCGA-OR-A5L1-01A-11D-A30A-10	43378913	171850329	71349044	7	8841										
CTNNB1	1499	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	41266136	41266136	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0149253731343284	1	1	0.363883847549909	2.63815789473684	0	1	1	0	gtgccactaccacagctcctTctctgagtggtaaaggcaat	9	12	1	1	rs121913407	bycluster	TCGA-OR-A5L1-01A-11D-A30A-10	TCGA-OR-A5L1-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ec61f9a9-1d55-4395-975b-9dae30944df4	b0f55c34-a9e1-49b6-9835-fa1825bfe350	.	CTNNB1-24361	NM_001098209	exon3	c.T133C	p.S45P	GCTCCTTCTCTGA	.	137	45	160	0	.	0	0	0	0	0	C	41266136	T	C	41266136	3	2	41	1	0	0	0	0	1	0	0	0	4022	1783	62	4	139	4	CTNNB1	3	41266136	Missense_Mutation	SNP	T	TCGA-OR-A5L1-01A-11D-A30A-10		41266136	156756294	8	8842										
FBXW12	285231	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	48420011	48420011	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0149253731343284	1	1	0.363883847549909	2.63815789473684	0	1	1	0	ttacaaaggatggcccattcCtgatggtaagtgagccctga	11	9	0	3	novel		TCGA-OR-A5L1-01A-11D-A30A-10	TCGA-OR-A5L1-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ec61f9a9-1d55-4395-975b-9dae30944df4	b0f55c34-a9e1-49b6-9835-fa1825bfe350	.	FBXW12-226	NM_207102	exon6	c.C610T	p.L204L	CCATTCCTGATGG	.	83	29	97	0	.	0	0	0	0	0	T	48420011	C	T	48420011	2	4	41	1	0	0	0	0	0	0	0	1	5784	680	24	3		3	FBXW12	3	48420011	Silent	SNP	C	TCGA-OR-A5L1-01A-11D-A30A-10	7153875	48420011	149602419	9	8843										
WDR6	11180	broad.mit.edu	37	chr3	49050036	49050036	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0149253731343284	1	1	0.363883847549909	2.63815789473684	0	1	1	0	cactcaaggctgtgactctgGctggctcttggcgactgctg	13	12	3	1	novel		TCGA-OR-A5L1-01A-11D-A30A-10	TCGA-OR-A5L1-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ec61f9a9-1d55-4395-975b-9dae30944df4	b0f55c34-a9e1-49b6-9835-fa1825bfe350	.	WDR6-90	NM_018031	exon2	c.G1159T	p.A387S	ACTCTGGCTGGCT	.	99	4	88	0	.	0	0	0	0	0	T	49050036	G	T	49050036	3	4	41	1	0	0	0	0	1	0	0	0	17348	1203	42	3	1165	3	WDR6	3	49050036	Missense_Mutation	SNP	G	TCGA-OR-A5L1-01A-11D-A30A-10	630025	49050036	148972394	10	8844										
SEMA5B	54437	hgsc.bcm.edu	37	chr3	122631896	122631896	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0149253731343284	1	1	0.363883847549909	2.63815789473684	0	1	1	0	tgctcccgctgcgcaggaggAcctccaccagggctgcggag	15	15	0	0	rs2276782	byfrequency	TCGA-OR-A5L1-01A-11D-A30A-10	TCGA-OR-A5L1-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ec61f9a9-1d55-4395-975b-9dae30944df4	b0f55c34-a9e1-49b6-9835-fa1825bfe350	.	SEMA5B-157	NM_001256347	exon18	c.T2681A	p.V894D	AGGAGGACCTCCA	.	6	6	0	0	T|0.412;A|0.588	0	0	0	0	0	T	122631896	A	T	122631896	3	4	41	1	0	0	0	0	1	0	0	0	14073	275	10	5	960	5	SEMA5B	3	122631896	Missense_Mutation	SNP	A	TCGA-OR-A5L1-01A-11D-A30A-10	73581860	122631896	75390534	11	8845										
MUC4	4585	bcgsc.ca	37	chr3	195511911	195511911	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0149253731343284	1	1	0.363883847549909	2.63815789473684	0	1	1	0	gtggatgctgaggaagtgtcGgtgacaggaagagaggtggc	20	4	0	3	rs200732241		TCGA-OR-A5L1-01A-11D-A30A-10	TCGA-OR-A5L1-10A-01D-A30A-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ec61f9a9-1d55-4395-975b-9dae30944df4	b0f55c34-a9e1-49b6-9835-fa1825bfe350	.	MUC4-90	NM_018406	exon2	c.C6540T	p.T2180T	AGTGTCGGTGACA	.	355	24	429	27	G|0.998;A|0.002	0	0	0	0	0	A	195511911	G	A	195511911	2	1	41	1	0	0	0	0	0	0	0	1	10006	1103	39	1		1	MUC4	3	195511911	Silent	SNP	G	TCGA-OR-A5L1-01A-11D-A30A-10	72880015	195511911	2510519	12	8846										
CRIPAK	285464	hgsc.bcm.edu	37	chr4	1388726	1388726	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0149253731343284	1	1	0.363883847549909	2.63815789473684	0	1	1	0	cgcctgctcacacgtgcccaTgcggagtgcccgcctgctca	11	18	2	0	rs199689156	byfrequency	TCGA-OR-A5L1-01A-11D-A30A-10	TCGA-OR-A5L1-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ec61f9a9-1d55-4395-975b-9dae30944df4	b0f55c34-a9e1-49b6-9835-fa1825bfe350	.	CRIPAK-90	NM_175918	exon1	c.T427C	p.C143R	TGCCCATGCGGAG	.	116	7	20	0	T|0.980;C|0.020	0	0	0	0	0	C	1388726	T	C	1388726	3	2	41	1	0	0	0	0	1	0	0	0	3883	1464	51	4	429	4	CRIPAK	4	1388726	Missense_Mutation	SNP	T	TCGA-OR-A5L1-01A-11D-A30A-10		1388726	189765550	13	8847										
ANTXR2	118429	bcgsc.ca	37	chr4	80898808	80898808	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0149253731343284	1	1	0.363883847549909	2.63815789473684	0	1	1	0	tgaggtcgcatcaaagaaacCcggtcatactgccgcctcaa	9	13	3	2	rs35798108	byfrequency	TCGA-OR-A5L1-01A-11D-A30A-10	TCGA-OR-A5L1-10A-01D-A30A-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ec61f9a9-1d55-4395-975b-9dae30944df4	b0f55c34-a9e1-49b6-9835-fa1825bfe350	.	ANTXR2-23	NM_001145794	exon16	c.G1395A	p.R465R	AGAAACCCGGTCA	.	159	7	85	0	C|0.936;T|0.064	0	0	0	0	0	T	80898808	C	T	80898808	2	4	41	1	0	0	0	0	0	0	0	1	712	610	22	3		3	ANTXR2	4	80898808	Silent	SNP	C	TCGA-OR-A5L1-01A-11D-A30A-10	79510082	80898808	110255468	14	8848										
RGMB	285704	hgsc.bcm.edu	37	chr5	98109838	98109838	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0149253731343284	1	1	0.363883847549909	2.63815789473684	0	1	1	0	ccgaggttgagcagcgccgcAgccccgggctctgccccccg	14	19	1	1	rs2662263		TCGA-OR-A5L1-01A-11D-A30A-10	TCGA-OR-A5L1-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ec61f9a9-1d55-4395-975b-9dae30944df4	b0f55c34-a9e1-49b6-9835-fa1825bfe350	.	.	NM_001012761	exon3	c.A187C	p.S63R	CGCCGCAGCCCCG	.	5	5	0	0	T|0.046;G|0.950	0	0	0	0	0	C	98109838	A	C	98109838	3	2	41	1	0	0	0	0	1	0	0	0	13316	188	7	5	193	5	RGMB	5	98109838	Missense_Mutation	SNP	A	TCGA-OR-A5L1-01A-11D-A30A-10		98109838	82805422	15	8849										
PCDHA9	9752	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	140230462	140230462	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0149253731343284	1	1	0.363883847549909	2.63815789473684	0	1	1	0	gaaccctctgcttcctcagaTtcaactgggaaggtgggttt	11	10	3	1	novel		TCGA-OR-A5L1-01A-11D-A30A-10	TCGA-OR-A5L1-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ec61f9a9-1d55-4395-975b-9dae30944df4	b0f55c34-a9e1-49b6-9835-fa1825bfe350	.	PCDHA9-138	NM_031857	exon1	c.T2382G	p.D794E	CTCAGATTCAACT	.	334	154	182	0	.	0	0	0	0	0	G	140230462	T	G	140230462	3	3	41	1	0	0	0	0	1	0	0	0	11560	1490	52	5	2384	5	PCDHA9	5	140230462	Missense_Mutation	SNP	T	TCGA-OR-A5L1-01A-11D-A30A-10	42120624	140230462	40684798	16	8850										
ITPR3	3710	bcgsc.ca	37	chr6	33653486	33653486	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0149253731343284	1	1	0.363883847549909	2.63815789473684	0	1	1	0	gctgggccccagcctgcgccGggggcacgaggtgagcgaac	18	14	0	1	rs12528378	byfrequency	TCGA-OR-A5L1-01A-11D-A30A-10	TCGA-OR-A5L1-10A-01D-A30A-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ec61f9a9-1d55-4395-975b-9dae30944df4	b0f55c34-a9e1-49b6-9835-fa1825bfe350	.	ITPR3-1085	NM_002224	exon41	c.G5549A	p.R1850Q	TGCGCCGGGGGCA	.	228	11	250	3	G|0.935;A|0.065	0	0	0	0	0	A	33653486	G	A	33653486	3	1	41	1	0	0	0	0	1	0	0	0	7943	1116	39	1	5711	1	ITPR3	6	33653486	Missense_Mutation	SNP	G	TCGA-OR-A5L1-01A-11D-A30A-10		33653486	137461581	17	8851										
TAAR5	9038	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	132910157	132910157	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0149253731343284	1	1	0.363883847549909	2.63815789473684	0	1	1	0	gcctgtctggtagcaaccacAaagatcttcacatacaagct	7	12	3	1	novel		TCGA-OR-A5L1-01A-11D-A30A-10	TCGA-OR-A5L1-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ec61f9a9-1d55-4395-975b-9dae30944df4	b0f55c34-a9e1-49b6-9835-fa1825bfe350	.	TAAR5-91	NM_003967	exon1	c.T669C	p.F223F	AACCACAAAGATC	.	75	27	99	0	.	0	0	0	0	0	G	132910157	A	G	132910157	2	3	41	1	0	0	0	0	0	0	0	1	15528	127	5	4		4	TAAR5	6	132910157	Silent	SNP	A	TCGA-OR-A5L1-01A-11D-A30A-10	99256671	132910157	38204910	18	8852										
LRP11	84918	hgsc.bcm.edu	37	chr6	150184882	150184882	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0149253731343284	1	1	0.363883847549909	2.63815789473684	0	1	1	0	cgctgtagccgccgctgcccGggcccgggcagtcctcctgg	15	18	0	0	rs9322225		TCGA-OR-A5L1-01A-11D-A30A-10	TCGA-OR-A5L1-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ec61f9a9-1d55-4395-975b-9dae30944df4	b0f55c34-a9e1-49b6-9835-fa1825bfe350	.	LRP11-90	NM_032832	exon1	c.C275G	p.P92R	CTGCCCGGGCCCG	.	4	4	0	0	G|0.492;C|0.508	0	0	0	0	0	C	150184882	G	C	150184882	3	2	41	1	0	0	0	0	1	0	0	0	8980	1116	39	2	1255	2	LRP11	6	150184882	Missense_Mutation	SNP	G	TCGA-OR-A5L1-01A-11D-A30A-10	17274725	150184882	20930185	19	8853										
BCL7B	9275	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	72952314	72952314	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0149253731343284	1	1	0.363883847549909	2.63815789473684	0	1	1	0	ggtgagggtaggaggttcatCagcaacttccgaggagggca	17	7	2	1	novel		TCGA-OR-A5L1-01A-11D-A30A-10	TCGA-OR-A5L1-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ec61f9a9-1d55-4395-975b-9dae30944df4	b0f55c34-a9e1-49b6-9835-fa1825bfe350	.	BCL7B-228	NM_001707	exon5	c.G466T	p.D156Y	GTTCATCAGCAAC	.	197	62	187	1	.	0	0	0	0	0	A	72952314	C	A	72952314	3	1	41	1	0	0	0	0	1	0	0	0	1380	826	29	3	150	3	BCL7B	7	72952314	Missense_Mutation	SNP	C	TCGA-OR-A5L1-01A-11D-A30A-10		72952314	86186349	20	8854										
MKLN1	4289	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	131084167	131084167	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0149253731343284	1	1	0.363883847549909	2.63815789473684	0	1	1	0	ggtgattttgatgcttgcgaAgagttgattgaaaaggctgt	14	3	0	5	novel		TCGA-OR-A5L1-01A-11D-A30A-10	TCGA-OR-A5L1-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ec61f9a9-1d55-4395-975b-9dae30944df4	b0f55c34-a9e1-49b6-9835-fa1825bfe350	.	MKLN1-135	NM_013255	exon6	c.A678G	p.E226E	TTGCGAAGAGTTG	.	154	47	140	2	.	0	0	0	0	0	G	131084167	A	G	131084167	2	3	41	1	0	0	0	0	0	0	0	1	9631	69	3	4		4	MKLN1	7	131084167	Silent	SNP	A	TCGA-OR-A5L1-01A-11D-A30A-10	58131853	131084167	28054496	21	8855										
CPNE3	8895	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr8	87560662	87560662	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0149253731343284	1	1	0.363883847549909	2.63815789473684	0	1	1	0	ggtcattcaagattatgatgCgtgagtatgactttggaaaa	11	4	2	4	novel		TCGA-OR-A5L1-01A-11D-A30A-10	TCGA-OR-A5L1-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ec61f9a9-1d55-4395-975b-9dae30944df4	b0f55c34-a9e1-49b6-9835-fa1825bfe350	.	CPNE3-117	NM_003909	exon12	c.C1013T	p.A338V	ATGATGCGTGAGT	.	117	28	119	0	.	0	0	0	0	0	T	87560662	C	T	87560662	3	4	41	1	0	0	0	0	1	0	0	0	3819	782	27	1	1051	1	CPNE3	8	87560662	Missense_Mutation	SNP	C	TCGA-OR-A5L1-01A-11D-A30A-10		87560662	58803360	22	8856										
ESRP1	54845	hgsc.bcm.edu;bcgsc.ca	37	chr8	95690599	95690599	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0149253731343284	1	1	0.363883847549909	2.63815789473684	0	1	1	0	ttacacagcgtactatcccaGgtaaggctctgacagaggtg	11	10	1	2	novel		TCGA-OR-A5L1-01A-11D-A30A-10	TCGA-OR-A5L1-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ec61f9a9-1d55-4395-975b-9dae30944df4	b0f55c34-a9e1-49b6-9835-fa1825bfe350	.	ESRP1-94	NM_017697	exon13	c.G1820T	p.S607I	ATCCCAGGTAAGG	.	62	4	57	0	.	0	0	0	0	0	T	95690599	G	T	95690599	3	4	41	1	0	0	0	0	1	0	0	0	5271	1014	35	3	1870	3	ESRP1	8	95690599	Missense_Mutation	SNP	G	TCGA-OR-A5L1-01A-11D-A30A-10	8129937	95690599	50673423	23	8857										
ZNF696	79943	hgsc.bcm.edu	37	chr8	144378868	144378868	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0149253731343284	1	1	0.363883847549909	2.63815789473684	0	1	1	0	ggcttcttccggcaccagcgActccacacgggcgagaagcc	12	16	1	1	rs7386259	byfrequency	TCGA-OR-A5L1-01A-11D-A30A-10	TCGA-OR-A5L1-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ec61f9a9-1d55-4395-975b-9dae30944df4	b0f55c34-a9e1-49b6-9835-fa1825bfe350	.	ZNF696-90	NM_030895	exon3	c.A1023G	p.R341R	CCAGCGACTCCAC	.	22	8	5	0	A|0.118;G|0.882	0	0	0	0	0	G	144378868	A	G	144378868	2	3	41	1	0	0	0	0	0	0	0	1	18136	262	10	4		4	ZNF696	8	144378868	Silent	SNP	A	TCGA-OR-A5L1-01A-11D-A30A-10	48688269	144378868	1985154	24	8858										
SHARPIN	81858	hgsc.bcm.edu	37	chr8	145158503	145158503	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0149253731343284	1	1	0.363883847549909	2.63815789473684	0	1	1	0	cagccggaagcgcccaggccGctcagggtccgcgctcagct	14	17	2	0	rs11136254		TCGA-OR-A5L1-01A-11D-A30A-10	TCGA-OR-A5L1-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ec61f9a9-1d55-4395-975b-9dae30944df4	b0f55c34-a9e1-49b6-9835-fa1825bfe350	.	SHARPIN-523	NM_030974	exon1	c.C154A	p.R52R	CAGGCCGCTCAGG	.	5	5	0	0	G|0.108;T|0.892	0	0	0	0	0	T	145158503	G	T	145158503	2	4	41	1	0	0	0	0	0	0	0	1	14302	1086	38	2		2	SHARPIN	8	145158503	Silent	SNP	G	TCGA-OR-A5L1-01A-11D-A30A-10	779635	145158503	1205519	25	8859										
PBX3	5090	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	128724400	128724400	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0149253731343284	1	1	0.363883847549909	2.63815789473684	0	1	1	0	ggttcttctggttcttttaaCctcccaaattctggggacat	8	10	4	0	novel		TCGA-OR-A5L1-01A-11D-A30A-10	TCGA-OR-A5L1-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ec61f9a9-1d55-4395-975b-9dae30944df4	b0f55c34-a9e1-49b6-9835-fa1825bfe350	.	PBX3-91	NM_006195	exon7	c.C1029T	p.N343N	TTTTAACCTCCCA	.	63	11	62	0	.	0	0	0	0	0	T	128724400	C	T	128724400	2	4	41	1	0	0	0	0	0	0	0	1	11523	506	18	3		3	PBX3	9	128724400	Silent	SNP	C	TCGA-OR-A5L1-01A-11D-A30A-10		128724400	12489031	26	8860										
DNAJC12	56521	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr10	69571291	69571291	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0149253731343284	1	1	0.363883847549909	2.63815789473684	0	1	1	0	gagaaacccaccgtcttcacTgagtcattcaaagcttccca	6	14	4	2	novel		TCGA-OR-A5L1-01A-11D-A30A-10	TCGA-OR-A5L1-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ec61f9a9-1d55-4395-975b-9dae30944df4	b0f55c34-a9e1-49b6-9835-fa1825bfe350	.	DNAJC12-658	NM_021800	exon3	c.A288C	p.S96S	CTTCACTGAGTCA	.	149	49	170	0	.	0	0	0	0	0	G	69571291	T	G	69571291	2	3	41	1	0	0	0	0	0	0	0	1	4642	1567	55	5		5	DNAJC12	10	69571291	Silent	SNP	T	TCGA-OR-A5L1-01A-11D-A30A-10		69571291	65963456	27	8861										
TDRD1	56165	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	115982440	115982440	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0149253731343284	1	1	0.363883847549909	2.63815789473684	0	1	1	0	tatagaccaagaattggagaCgcatgctgtgccaaatacac	9	9	0	3	novel		TCGA-OR-A5L1-01A-11D-A30A-10	TCGA-OR-A5L1-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ec61f9a9-1d55-4395-975b-9dae30944df4	b0f55c34-a9e1-49b6-9835-fa1825bfe350	.	TDRD1-90	NM_198795	exon21	c.C2985T	p.D995D	TGGAGACGCATGC	.	47	6	71	0	.	0	0	0	0	0	T	115982440	C	T	115982440	2	4	41	1	0	0	0	0	0	0	0	1	15767	535	19	1		1	TDRD1	10	115982440	Silent	SNP	C	TCGA-OR-A5L1-01A-11D-A30A-10	46411149	115982440	19552307	28	8862										
CTBP2	1488	hgsc.bcm.edu	37	chr10	126715159	126715160	+	In_Frame_Ins	INS	-	-	GCCGCAGGCTGGGGCTGCAGG													0.0149253731343284	1	1	0.363883847549909	2.63815789473684	0	1	1	0	gggatgctgtctgcagaggaINSgccgcagcgcccagagaagc					novel		TCGA-OR-A5L1-01A-11D-A30A-10	TCGA-OR-A5L1-10A-01D-A30A-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ec61f9a9-1d55-4395-975b-9dae30944df4	b0f55c34-a9e1-49b6-9835-fa1825bfe350	.	CTBP2-90	NM_022802	exon1	c.1170_1171insCCTGCAGCCCCAGCCTGCGGC	p.A390delinsALQPQPAA	CAGAGGAGCCGCA	.	55	6	51	2	.	0	0	0	0	0	GCCGCAGGCTGGGGCTGCAGG	126715160	-	GCCGCAGGCTGGGGCTGCAGG	126715159	7	5	41	1	0	1	1	0	0	0	0	0	4004	291	11	0	1823	0	CTBP2	10	126715159	In_Frame_Ins	INS	-	TCGA-OR-A5L1-01A-11D-A30A-10	10732719	126715159	8819588	29	8863										
USH1C	10083	broad.mit.edu	37	chr11	17542909	17542909	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0149253731343284	1	1	0.363883847549909	2.63815789473684	0	1	1	0	tcactgttccatctccttccGgtatctctcattttcctctg	4	15	5	0	rs140934960		TCGA-OR-A5L1-01A-11D-A30A-10	TCGA-OR-A5L1-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ec61f9a9-1d55-4395-975b-9dae30944df4	b0f55c34-a9e1-49b6-9835-fa1825bfe350	.	USH1C-91	NM_005709	exon13	c.C1069T	p.R357W	CCTTCCGGTATCT	.	125	4	134	1	G|1.000;A|0.000	0	0	0	0	0	A	17542909	G	A	17542909	3	1	41	1	0	0	0	0	1	0	0	0	17072	1115	39	1	1768	1	USH1C	11	17542909	Missense_Mutation	SNP	G	TCGA-OR-A5L1-01A-11D-A30A-10		17542909	117463607	30	8864										
TCP11L1	55346	bcgsc.ca	37	chr11	33065394	33065394	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0149253731343284	1	1	0.363883847549909	2.63815789473684	0	1	1	0	aatgattctgaggaaggcctCgaagatgctgtggaaggtgc	15	6	1	3	rs1064005	byfrequency	TCGA-OR-A5L1-01A-11D-A30A-10	TCGA-OR-A5L1-10A-01D-A30A-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ec61f9a9-1d55-4395-975b-9dae30944df4	b0f55c34-a9e1-49b6-9835-fa1825bfe350	.	TCP11L1-90	NM_001145541	exon2	c.C75T	p.L25L	AGGCCTCGAAGAT	.	76	5	106	0	C|0.583;T|0.417	0	0	0	0	0	T	33065394	C	T	33065394	2	4	41	1	0	0	0	0	0	0	0	1	15751	871	31	1		1	TCP11L1	11	33065394	Silent	SNP	C	TCGA-OR-A5L1-01A-11D-A30A-10	15522485	33065394	101941122	31	8865										
LRP5	4041	bcgsc.ca	37	chr11	68174122	68174122	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0149253731343284	1	1	0.363883847549909	2.63815789473684	0	1	1	0	aagacctgcatcgtgcctgaGgccttcttggtcttcaccag	10	13	3	2	rs2277268	byfrequency	TCGA-OR-A5L1-01A-11D-A30A-10	TCGA-OR-A5L1-10A-01D-A30A-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ec61f9a9-1d55-4395-975b-9dae30944df4	b0f55c34-a9e1-49b6-9835-fa1825bfe350	.	LRP5-661	NM_002335	exon9	c.G1932A	p.E644E	GCCTGAGGCCTTC	.	97	5	139	2	G|0.935;A|0.065	0	0	0	0	0	A	68174122	G	A	68174122	2	1	41	1	0	0	0	0	0	0	0	1	8987	991	35	3		3	LRP5	11	68174122	Silent	SNP	G	TCGA-OR-A5L1-01A-11D-A30A-10	35108728	68174122	66832394	32	8866										
KCNA6	3742	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	4919736	4919736	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0149253731343284	1	1	0.363883847549909	2.63815789473684	0	1	1	0	ctgggccggccaggggcatcGccatcgtctccgtgttggtc	15	14	1	0	novel		TCGA-OR-A5L1-01A-11D-A30A-10	TCGA-OR-A5L1-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ec61f9a9-1d55-4395-975b-9dae30944df4	b0f55c34-a9e1-49b6-9835-fa1825bfe350	.	KCNA6-93	NM_002235	exon1	c.G529A	p.A177T	GGCATCGCCATCG	.	244	50	132	1	.	0	0	0	0	0	A	4919736	G	A	4919736	3	1	41	1	0	0	0	0	1	0	0	0	8028	1087	38	1	531	1	KCNA6	12	4919736	Missense_Mutation	SNP	G	TCGA-OR-A5L1-01A-11D-A30A-10		4919736	128932159	33	8867										
GTSF1	121355	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	54857074	54857074	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0149253731343284	1	1	0.363883847549909	2.63815789473684	0	1	1	0	ccaatttgcttgcaacatcaGgatgattctgtggaaccaaa	8	9	2	1	novel		TCGA-OR-A5L1-01A-11D-A30A-10	TCGA-OR-A5L1-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ec61f9a9-1d55-4395-975b-9dae30944df4	b0f55c34-a9e1-49b6-9835-fa1825bfe350	.	GTSF1-90	NM_144594	exon4	c.C125A	p.P42H	ACATCAGGATGAT	.	165	86	103	0	.	0	0	0	0	0	T	54857074	G	T	54857074	3	4	41	1	0	0	0	0	1	0	0	0	6907	1000	35	3	398	3	GTSF1	12	54857074	Missense_Mutation	SNP	G	TCGA-OR-A5L1-01A-11D-A30A-10	49937338	54857074	78994821	34	8868										
F7	2155	bcgsc.ca	37	chr13	113770068	113770068	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0149253731343284	1	1	0.363883847549909	2.63815789473684	0	1	1	0	aagcgctcctgtcggtgccaCgaggggtactctctgctggc	14	13	1	0	rs6042	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-OR-A5L1-01A-11D-A30A-10	TCGA-OR-A5L1-10A-01D-A30A-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ec61f9a9-1d55-4395-975b-9dae30944df4	b0f55c34-a9e1-49b6-9835-fa1825bfe350	.	F7-90	NM_000131	exon6	c.C525T	p.H175H	GTGCCACGAGGGG	.	92	5	185	1	C|0.876;T|0.124	0	0	0	0	0	T	113770068	C	T	113770068	2	4	41	1	0	0	0	0	0	0	0	1	5362	535	19	1		1	F7	13	113770068	Silent	SNP	C	TCGA-OR-A5L1-01A-11D-A30A-10		113770068	1399810	35	8869										
OR11H12	440153	bcgsc.ca	37	chr14	19378496	19378496	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0149253731343284	1	1	0.363883847549909	2.63815789473684	0	1	1	0	atggtgaccccactcttcaaTccccttatctatagcctcca	4	16	3	1	novel		TCGA-OR-A5L1-01A-11D-A30A-10	TCGA-OR-A5L1-10A-01D-A30A-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ec61f9a9-1d55-4395-975b-9dae30944df4	b0f55c34-a9e1-49b6-9835-fa1825bfe350	.	OR11H12-24	NM_001013354	exon1	c.T903C	p.N301N	CTTCAATCCCCTT	.	392	61	419	3	.	0	0	0	0	0	C	19378496	T	C	19378496	2	2	41	1	0	0	0	0	0	0	0	1	10956	1432	50	4		4	OR11H12	14	19378496	Silent	SNP	T	TCGA-OR-A5L1-01A-11D-A30A-10		19378496	87971044	36	8870										
KIF26A	26153	bcgsc.ca	37	chr14	104643409	104643409	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0149253731343284	1	1	0.363883847549909	2.63815789473684	0	1	1	0	cgggccagcaaggtagaagcAgcacaccgtcttgccggaca	13	13	1	1	rs2487303	byfrequency	TCGA-OR-A5L1-01A-11D-A30A-10	TCGA-OR-A5L1-10A-01D-A30A-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ec61f9a9-1d55-4395-975b-9dae30944df4	b0f55c34-a9e1-49b6-9835-fa1825bfe350	.	KIF26A-24	NM_015656	exon12	c.A4284G	p.A1428A	AGAAGCAGCACAC	.	14	14	8	1	A|0.242;G|0.758	0	0	0	0	0	G	104643409	A	G	104643409	2	3	41	1	0	0	0	0	0	0	0	1	8315	175	7	4		4	KIF26A	14	104643409	Silent	SNP	A	TCGA-OR-A5L1-01A-11D-A30A-10	85264913	104643409	2706131	37	8871			1	42		2	2	13	N	T_A	2.597139e-05
KIF26A	26153	bcgsc.ca	37	chr14	104643421	104643421	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0149253731343284	1	1	0.363883847549909	2.63815789473684	0	1	1	0	gtagaagcagcacaccgtctTgccggacacgcgtctctgga	12	13	2	1	rs2487302	byfrequency	TCGA-OR-A5L1-01A-11D-A30A-10	TCGA-OR-A5L1-10A-01D-A30A-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ec61f9a9-1d55-4395-975b-9dae30944df4	b0f55c34-a9e1-49b6-9835-fa1825bfe350	.	KIF26A-24	NM_015656	exon12	c.T4296C	p.L1432L	CCGTCTTGCCGGA	.	13	13	8	1	T|0.569;C|0.431	0	0	0	0	0	C	104643421	T	C	104643421	2	2	41	1	0	0	0	0	0	0	0	1	8315	1799	63	4		4	KIF26A	14	104643421	Silent	SNP	T	TCGA-OR-A5L1-01A-11D-A30A-10	12	104643421	2706119	38	8872			1	42		2	2	13	N	T_A	2.597139e-05
DNAJA4	55466	bcgsc.ca	37	chr15	78567960	78567960	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0149253731343284	1	1	0.363883847549909	2.63815789473684	0	1	1	0	tagtgtctttcagagacgagGccatgacttgatcatgaaaa	10	7	3	4	novel		TCGA-OR-A5L1-01A-11D-A30A-10	TCGA-OR-A5L1-10A-01D-A30A-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ec61f9a9-1d55-4395-975b-9dae30944df4	b0f55c34-a9e1-49b6-9835-fa1825bfe350	.	DNAJA4-226	NM_018602	exon6	c.G854T	p.G285V	GACGAGGCCATGA	.	136	5	137	1	.	0	0	0	0	0	T	78567960	G	T	78567960	3	4	41	1	0	0	0	0	1	0	0	0	4625	1203	42	3	931	3	DNAJA4	15	78567960	Missense_Mutation	SNP	G	TCGA-OR-A5L1-01A-11D-A30A-10		78567960	23963432	39	8873										
MRPS34	65993	hgsc.bcm.edu	37	chr16	1822947	1822947	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0149253731343284	1	1	0.363883847549909	2.63815789473684	0	1	1	0	aagaggcggctctcgcggcgCacgtcggcccaggcccggac	16	16	1	1	rs1076695		TCGA-OR-A5L1-01A-11D-A30A-10	TCGA-OR-A5L1-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ec61f9a9-1d55-4395-975b-9dae30944df4	b0f55c34-a9e1-49b6-9835-fa1825bfe350	.	MRPS34-92	NM_023936	exon1	c.G174C	p.V58V	GCGGCGCACGTCG	.	9	6	0	0	C|0.923;G|0.077	0	0	0	0	0	G	1822947	C	G	1822947	2	3	41	1	0	0	0	0	0	0	0	1	9871	697	25	3		3	MRPS34	16	1822947	Silent	SNP	C	TCGA-OR-A5L1-01A-11D-A30A-10		1822947	88531806	40	8874										
EME2	197342	hgsc.bcm.edu	37	chr16	1823444	1823444	+	Silent	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.0149253731343284	1	1	0.363883847549909	2.63815789473684	0	1	1	0	ctgctgcggccggagcaggtCctgaagcgcctcgcggtgtg	17	13	0	1	rs761065		TCGA-OR-A5L1-01A-11D-A30A-10	TCGA-OR-A5L1-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ec61f9a9-1d55-4395-975b-9dae30944df4	b0f55c34-a9e1-49b6-9835-fa1825bfe350	.	EME2-229	NM_001257370	exon1	c.C216G	p.V72V	GCAGGTCCTGAAG	.	7	7	0	0	C|0.615;G|0.385	0	0	0	0	0	G	1823444	C	G	1823444	2	3	41	1	0	0	0	0	0	0	0	1	5102	842	30	3		3	EME2	16	1823444	Silent	SNP	C	TCGA-OR-A5L1-01A-11D-A30A-10	497	1823444	88531309	41	8875										
KRTAP4-5	85289	hgsc.bcm.edu	37	chr17	39305769	39305769	+	Missense_Mutation	SNP	G	G	C													0.0149253731343284	1	1	0.363883847549909	2.63815789473684	0	1	1	0	agcaggtggtcctgcagcagGtggtctggcagcagcagggg					rs151111061		TCGA-OR-A5L1-01A-11D-A30A-10	TCGA-OR-A5L1-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ec61f9a9-1d55-4395-975b-9dae30944df4	b0f55c34-a9e1-49b6-9835-fa1825bfe350	.	KRTAP4-5-90	NM_033188	exon1	c.C251G	p.T84S	CAGCAGGTGGTCT	.	78	24	83	0	.	0	0	0	0	0	C	39305769	G	C	39305769	3	2	41	1	0	0	0	0	1	0	0	0	8576	1261	44	3	298	3	KRTAP4-5	17	39305769	Missense_Mutation	SNP	G	TCGA-OR-A5L1-01A-11D-A30A-10		39305769	41889441	42	8876	99	2								
KRTAP4-5	85289	hgsc.bcm.edu	37	chr17	39305774	39305774	+	Missense_Mutation	SNP	C	C	G													0.0149253731343284	1	1	0.363883847549909	2.63815789473684	0	1	1	0	gtggtcctgcagcaggtggtCtggcagcagcaggggcggca					rs137947981		TCGA-OR-A5L1-01A-11D-A30A-10	TCGA-OR-A5L1-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ec61f9a9-1d55-4395-975b-9dae30944df4	b0f55c34-a9e1-49b6-9835-fa1825bfe350	.	KRTAP4-5-90	NM_033188	exon1	c.G246C	p.Q82H	GGTGGTCTGGCAG	.	79	24	77	0	.	0	0	0	0	0	G	39305774	C	G	39305774	3	3	41	1	0	0	0	0	1	0	0	0	8576	912	32	3	303	3	KRTAP4-5	17	39305774	Missense_Mutation	SNP	C	TCGA-OR-A5L1-01A-11D-A30A-10	5	39305774	41889436	43	8877	99	2								
ASB16	92591	hgsc.bcm.edu	37	chr17	42254281	42254281	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0149253731343284	1	1	0.363883847549909	2.63815789473684	0	1	1	0	agggcgagactgcgctgaacAcggcgtgcgctggggccgag	19	11	0	2	rs7212573	byfrequency	TCGA-OR-A5L1-01A-11D-A30A-10	TCGA-OR-A5L1-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ec61f9a9-1d55-4395-975b-9dae30944df4	b0f55c34-a9e1-49b6-9835-fa1825bfe350	.	ASB16-227	NM_080863	exon3	c.A745G	p.T249A	CTGAACACGGCGT	.	5	5	2	0	A|0.476;G|0.524	0	0	0	0	0	G	42254281	A	G	42254281	3	3	41	1	0	0	0	0	1	0	0	0	1021	159	6	4	755	4	ASB16	17	42254281	Missense_Mutation	SNP	A	TCGA-OR-A5L1-01A-11D-A30A-10	2948507	42254281	38940929	44	8878										
PLEKHM1	9842	bcgsc.ca	37	chr17	43552921	43552921	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0149253731343284	1	1	0.363883847549909	2.63815789473684	0	1	1	0	aactcgccctcctcagcatcCcggagcagggcggtgggctg	14	15	1	0	rs12452273	byfrequency	TCGA-OR-A5L1-01A-11D-A30A-10	TCGA-OR-A5L1-10A-01D-A30A-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ec61f9a9-1d55-4395-975b-9dae30944df4	b0f55c34-a9e1-49b6-9835-fa1825bfe350	.	PLEKHM1-90	NM_014798	exon4	c.G468A	p.R156R	AGCATCCCGGAGC	.	260	9	323	4	C|0.865;T|0.135	0	0	0	0	0	T	43552921	C	T	43552921	2	4	41	1	0	0	0	0	0	0	0	1	12109	610	22	3		3	PLEKHM1	17	43552921	Silent	SNP	C	TCGA-OR-A5L1-01A-11D-A30A-10	1298640	43552921	37642289	45	8879										
ABCA6	23460	bcgsc.ca	37	chr17	67081276	67081276	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0149253731343284	1	1	0.363883847549909	2.63815789473684	0	1	1	0	cacagcacgttctcttgaggGcagtaccccaggtggcccaa	11	14	1	1	novel		TCGA-OR-A5L1-01A-11D-A30A-10	TCGA-OR-A5L1-10A-01D-A30A-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ec61f9a9-1d55-4395-975b-9dae30944df4	b0f55c34-a9e1-49b6-9835-fa1825bfe350	.	ABCA6-159	NM_080284	exon32	c.C4077A	p.C1359X	TTGAGGGCAGTAC	.	64	4	53	0	.	0	0	0	0	0	T	67081276	G	T	67081276	4	4	41	1	0	0	0	0	0	1	0	0	36	1195	42	3	808	3	ABCA6	17	67081276	Nonsense_Mutation	SNP	G	TCGA-OR-A5L1-01A-11D-A30A-10	23528355	67081276	14113934	46	8880										
FAM104A	84923	broad.mit.edu	37	chr17	71205699	71205699	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0149253731343284	1	1	0.363883847549909	2.63815789473684	0	1	1	0	gccgccctcggtgctgtaggCtgtggaagtgggcctccctc	15	14	0	0	novel		TCGA-OR-A5L1-01A-11D-A30A-10	TCGA-OR-A5L1-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ec61f9a9-1d55-4395-975b-9dae30944df4	b0f55c34-a9e1-49b6-9835-fa1825bfe350	.	.	NM_001098832	exon4	c.G593T	p.S198I	TGTAGGCTGTGGA	.	72	8	74	2	.	0	0	0	0	0	A	71205699	C	A	71205699	3	1	41	1	0	0	0	0	1	0	0	0	5401	797	28	3	34	3	FAM104A	17	71205699	Missense_Mutation	SNP	C	TCGA-OR-A5L1-01A-11D-A30A-10	4124423	71205699	9989511	47	8881										
AATK	9625	hgsc.bcm.edu	37	chr17	79096115	79096115	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0149253731343284	1	1	0.363883847549909	2.63815789473684	0	1	1	0	gcagtcagggtcgtggccggCggcgggtgcggcctcctcta	18	13	2	0	rs61738821	byfrequency	TCGA-OR-A5L1-01A-11D-A30A-10	TCGA-OR-A5L1-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ec61f9a9-1d55-4395-975b-9dae30944df4	b0f55c34-a9e1-49b6-9835-fa1825bfe350	.	AATK-933	NM_001080395	exon11	c.G1621A	p.A541T	GGCCGGCGGCGGG	.	28	25	1	0	C|0.850;T|0.150	0	0	0	0	0	T	79096115	C	T	79096115	3	4	41	1	0	0	0	0	1	0	0	0	26	768	27	1	2519	1	AATK	17	79096115	Missense_Mutation	SNP	C	TCGA-OR-A5L1-01A-11D-A30A-10	7890416	79096115	2099095	48	8882										
B3GNTL1	146712	hgsc.bcm.edu	37	chr17	81009622	81009622	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0149253731343284	1	1	0.363883847549909	2.63815789473684	0	1	1	0	ctggcacctaccacgtgggcCtgcatggcctggctctcctc	11	17	1	0	rs59686903	byfrequency	TCGA-OR-A5L1-01A-11D-A30A-10	TCGA-OR-A5L1-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ec61f9a9-1d55-4395-975b-9dae30944df4	b0f55c34-a9e1-49b6-9835-fa1825bfe350	.	B3GNTL1-92	NM_001009905	exon1	c.G51A	p.Q17Q	GTGGGCCTGCATG	.	5	5	8	0	C|0.880;T|0.120	0	0	0	0	0	T	81009622	C	T	81009622	2	4	41	1	0	0	0	0	0	0	0	1	1266	680	24	3		3	B3GNTL1	17	81009622	Silent	SNP	C	TCGA-OR-A5L1-01A-11D-A30A-10	1913507	81009622	185588	49	8883			2	43		2	2	15	N	T_C	3.029989e-05
B3GNTL1	146712	hgsc.bcm.edu	37	chr17	81009636	81009636	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0149253731343284	1	1	0.363883847549909	2.63815789473684	0	1	1	0	gtgggcctgcatggcctggcTctcctcggacgccccgccca	13	18	1	0	rs57923322	byfrequency	TCGA-OR-A5L1-01A-11D-A30A-10	TCGA-OR-A5L1-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ec61f9a9-1d55-4395-975b-9dae30944df4	b0f55c34-a9e1-49b6-9835-fa1825bfe350	.	B3GNTL1-92	NM_001009905	exon1	c.A37C	p.S13R	CCTGGCTCTCCTC	.	5	5	8	0	T|0.786;G|0.214	0	0	0	0	0	G	81009636	T	G	81009636	3	3	41	1	0	0	0	0	1	0	0	0	1266	1551	54	5	1096	5	B3GNTL1	17	81009636	Missense_Mutation	SNP	T	TCGA-OR-A5L1-01A-11D-A30A-10	14	81009636	185574	50	8884			2	43		2	2	15	N	T_C	3.029989e-05
CBLN2	147381	hgsc.bcm.edu	37	chr18	70209321	70209321	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0149253731343284	1	1	0.363883847549909	2.63815789473684	0	1	1	0	aggcaggatccgcagccgccCggctcgcgcagcgccccccg	14	20	0	0	rs7237888		TCGA-OR-A5L1-01A-11D-A30A-10	TCGA-OR-A5L1-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ec61f9a9-1d55-4395-975b-9dae30944df4	b0f55c34-a9e1-49b6-9835-fa1825bfe350	.	CBLN2-90	NM_182511	exon3	c.G75T	p.P25P	GCCGCCCGGCTCG	.	10	10	0	0	C|0.390;A|0.610	0	0	0	0	0	A	70209321	C	A	70209321	2	1	41	1	0	0	0	0	0	0	0	1	2711	639	23	2		2	CBLN2	18	70209321	Silent	SNP	C	TCGA-OR-A5L1-01A-11D-A30A-10		70209321	7867927	51	8885										
NWD1	284434	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	16861150	16861150	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0149253731343284	1	1	0.363883847549909	2.63815789473684	0	1	1	0	agaggaagccacgcaccaacTctgcacccgcctggagcaga	11	15	1	2	novel		TCGA-OR-A5L1-01A-11D-A30A-10	TCGA-OR-A5L1-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ec61f9a9-1d55-4395-975b-9dae30944df4	b0f55c34-a9e1-49b6-9835-fa1825bfe350	.	NWD1-7	NM_001007525	exon6	c.T1697A	p.L566H	ACCAACTCTGCAC	.	82	34	63	0	.	0	0	0	0	0	A	16861150	T	A	16861150	3	1	41	1	0	0	0	0	1	0	0	0	10810	1551	54	5	1298	5	NWD1	19	16861150	Missense_Mutation	SNP	T	TCGA-OR-A5L1-01A-11D-A30A-10		16861150	42267833	52	8886										
TBCB	1155	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	36611666	36611666	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0149253731343284	1	1	0.363883847549909	2.63815789473684	0	1	1	0	atgaggacgtgtcccgggtgGagaagtacacgatctcacaa	13	9	1	2	novel		TCGA-OR-A5L1-01A-11D-A30A-10	TCGA-OR-A5L1-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ec61f9a9-1d55-4395-975b-9dae30944df4	b0f55c34-a9e1-49b6-9835-fa1825bfe350	.	TBCB-90	NM_001281	exon3	c.G313A	p.E105K	CGGGTGGAGAAGT	.	173	67	106	0	.	0	0	0	0	0	A	36611666	G	A	36611666	3	1	41	1	0	0	0	0	1	0	0	0	15667	1175	41	3	323	3	TBCB	19	36611666	Missense_Mutation	SNP	G	TCGA-OR-A5L1-01A-11D-A30A-10	19750516	36611666	22517317	53	8887										
NUMBL	9253	hgsc.bcm.edu	37	chr19	41173886	41173886	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0149253731343284	1	1	0.363883847549909	2.63815789473684	0	1	1	0	tgctgctgttgctgctgctgCtgctgctgctgttgctgttg	14	10	0	0	rs62640392		TCGA-OR-A5L1-01A-11D-A30A-10	TCGA-OR-A5L1-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ec61f9a9-1d55-4395-975b-9dae30944df4	b0f55c34-a9e1-49b6-9835-fa1825bfe350	.	NUMBL-637	NM_004756	exon10	c.G1317A	p.Q439Q	CTGCTGCTGCTGC	.	99	12	74	0	C|0.984;T|0.016	0	0	0	0	0	T	41173886	C	T	41173886	2	4	41	1	0	0	0	0	0	0	0	1	10781	796	28	3		3	NUMBL	19	41173886	Silent	SNP	C	TCGA-OR-A5L1-01A-11D-A30A-10	4562220	41173886	17955097	54	8888			3	44		2	2	13	N	T_C	2.597139e-05
NUMBL	9253	hgsc.bcm.edu	37	chr19	41173898	41173898	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0149253731343284	1	1	0.363883847549909	2.63815789473684	0	1	1	0	tgctgctgctgctgctgctgTtgctgttgctgctgctgctg	14	11	0	0	rs79747129		TCGA-OR-A5L1-01A-11D-A30A-10	TCGA-OR-A5L1-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ec61f9a9-1d55-4395-975b-9dae30944df4	b0f55c34-a9e1-49b6-9835-fa1825bfe350	.	NUMBL-637	NM_004756	exon10	c.A1305G	p.Q435Q	CTGCTGTTGCTGT	.	92	23	61	0	.	0	0	0	0	0	C	41173898	T	C	41173898	2	2	41	1	0	0	0	0	0	0	0	1	10781	1722	60	4		4	NUMBL	19	41173898	Silent	SNP	T	TCGA-OR-A5L1-01A-11D-A30A-10	12	41173898	17955085	55	8889			3	44		2	2	13	N	T_C	2.597139e-05
MARK4	57787	broad.mit.edu	37	chr19	45783864	45783864	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0149253731343284	1	1	0.363883847549909	2.63815789473684	0	1	1	0	ccggggcgccccagggctggCcctggcacgggtgcgggcgc	20	16	0	0	novel		TCGA-OR-A5L1-01A-11D-A30A-10	TCGA-OR-A5L1-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ec61f9a9-1d55-4395-975b-9dae30944df4	b0f55c34-a9e1-49b6-9835-fa1825bfe350	.	MARK4-782	NM_001199867	exon12	c.C1148A	p.A383D	GGCTGGCCCTGGC	.	237	21	112	4	.	0	0	0	0	0	A	45783864	C	A	45783864	3	1	41	1	0	0	0	0	1	0	0	0	9343	739	26	3	1194	3	MARK4	19	45783864	Missense_Mutation	SNP	C	TCGA-OR-A5L1-01A-11D-A30A-10	4609966	45783864	13345119	56	8890										
NTN5	126147	hgsc.bcm.edu	37	chr19	49164952	49164952	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0149253731343284	1	1	0.363883847549909	2.63815789473684	0	1	1	0	gtctagtgctccggcctgggActgggtgtgggtgcccgcac	17	12	1	0	rs281392	byfrequency	TCGA-OR-A5L1-01A-11D-A30A-10	TCGA-OR-A5L1-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ec61f9a9-1d55-4395-975b-9dae30944df4	b0f55c34-a9e1-49b6-9835-fa1825bfe350	.	NTN5-136	NM_145807	exon7	c.T1452C	p.S484S	CCTGGGACTGGGT	.	12	10	9	0	A|0.464;G|0.536	0	0	0	0	0	G	49164952	A	G	49164952	2	3	41	1	0	0	0	0	0	0	0	1	10732	272	10	4		4	NTN5	19	49164952	Silent	SNP	A	TCGA-OR-A5L1-01A-11D-A30A-10	3381088	49164952	9964031	57	8891										
ZNF628	89887	hgsc.bcm.edu	37	chr19	55993260	55993260	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0149253731343284	1	1	0.363883847549909	2.63815789473684	0	1	1	0	gcgccgcccccgccccgggtAccgcctccgcggccccgccc	12	26	0	0	rs34864744		TCGA-OR-A5L1-01A-11D-A30A-10	TCGA-OR-A5L1-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ec61f9a9-1d55-4395-975b-9dae30944df4	b0f55c34-a9e1-49b6-9835-fa1825bfe350	.	ZNF628-22	NM_033113	exon3	c.A700G	p.T234A	CCGGGTACCGCCT	.	8	8	0	0	A|0.270;G|0.730	0	0	0	0	0	G	55993260	A	G	55993260	3	3	41	1	0	0	0	0	1	0	0	0	18089	391	14	4	690	4	ZNF628	19	55993260	Missense_Mutation	SNP	A	TCGA-OR-A5L1-01A-11D-A30A-10	6828308	55993260	3135723	58	8892										
SLC4A11	83959	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr20	3210295	3210318	+	In_Frame_Del	DEL	GCTGGCGTTGAGGGCAGTGTGGAG	GCTGGCGTTGAGGGCAGTGTGGAG	-													0.0149253731343284	1	1	0.363883847549909	2.63815789473684	0	1	1	0	tccgtggggctggcgaggaaGctggcgttgagggcagtgtg					novel		TCGA-OR-A5L1-01A-11D-A30A-10	TCGA-OR-A5L1-10A-01D-A30A-10	GCTGGCGTTGAGGGCAGTGTGGAG	GCTGGCGTTGAGGGCAGTGTGGAG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ec61f9a9-1d55-4395-975b-9dae30944df4	b0f55c34-a9e1-49b6-9835-fa1825bfe350	.	SLC4A11-91	NM_001174090	exon14	c.1723_1746del	p.575_582del	GAGGAAGCTGGCG	.	148	45	74	0	.	0	0	0	0	0	-	3210318	GCTGGCGTTGAGGGCAGTGTGGAG	-	3210295	7	5	41	1	0	1	0	1	0	0	0	0	14687	962	34	0	1038	0	SLC4A11	20	3210295	In_Frame_Del	DEL	GCTGGCGTTGAGGGCAGTGTGGAG	TCGA-OR-A5L1-01A-11D-A30A-10		3210295	59815225	59	8893										
SON	6651	hgsc.bcm.edu	37	chr21	34948684	34948684	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0149253731343284	1	1	0.363883847549909	2.63815789473684	0	1	1	0	tgaataggtattgagaaatgGagcccttaccagacccaatt	9	8	0	3	novel		TCGA-OR-A5L1-01A-11D-A30A-10	TCGA-OR-A5L1-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ec61f9a9-1d55-4395-975b-9dae30944df4	b0f55c34-a9e1-49b6-9835-fa1825bfe350	.	SON-97	NM_138927	exon12	c.G7235A	p.G2412E	GAAATGGAGCCCT	.	67	2	33	0	.	0	0	0	0	0	A	34948684	G	A	34948684	3	1	41	1	0	0	0	0	1	0	0	0	14961	1174	41	3	7540	3	SON	21	34948684	Missense_Mutation	SNP	G	TCGA-OR-A5L1-01A-11D-A30A-10		34948684	13181211	60	8894										
PCNT	5116	bcgsc.ca	37	chr21	47851796	47851796	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0149253731343284	1	1	0.363883847549909	2.63815789473684	0	1	1	0	cgggtggtggacttgcaagcGatgcttgaaaaggtgcagca	16	7	0	1	rs9983522	byfrequency	TCGA-OR-A5L1-01A-11D-A30A-10	TCGA-OR-A5L1-10A-01D-A30A-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ec61f9a9-1d55-4395-975b-9dae30944df4	b0f55c34-a9e1-49b6-9835-fa1825bfe350	.	PCNT-141	NM_006031	exon38	c.G8418A	p.A2806A	GCAAGCGATGCTT	.	130	6	70	0	G|0.887;A|0.113	0	0	0	0	0	A	47851796	G	A	47851796	2	1	41	1	0	0	0	0	0	0	0	1	11619	1045	37	1		1	PCNT	21	47851796	Silent	SNP	G	TCGA-OR-A5L1-01A-11D-A30A-10	12903112	47851796	278099	61	8895										
MYH9	4627	broad.mit.edu	37	chr22	36702092	36702092	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0149253731343284	1	1	0.363883847549909	2.63815789473684	0	1	1	0	acgagatgcgggtccagcttGccggcctggagaagaaaaca	14	10	0	3	novel		TCGA-OR-A5L1-01A-11D-A30A-10	TCGA-OR-A5L1-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ec61f9a9-1d55-4395-975b-9dae30944df4	b0f55c34-a9e1-49b6-9835-fa1825bfe350	.	MYH9-292	NM_002473	exon17	c.C2043A	p.G681G	CAGCTTGCCGGCC	.	79	7	101	4	.	0	0	0	0	0	T	36702092	G	T	36702092	2	4	41	1	0	0	0	0	0	0	0	1	10070	1306	46	3		3	MYH9	22	36702092	Silent	SNP	G	TCGA-OR-A5L1-01A-11D-A30A-10		36702092	14602474	62	8896										
SH3BP1	23616	hgsc.bcm.edu	37	chr22	38051355	38051355	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0149253731343284	1	1	0.363883847549909	2.63815789473684	0	1	1	0	cgctcctcccctccagccccGcccttgccccctggctctgg	8	24	1	0	rs762989		TCGA-OR-A5L1-01A-11D-A30A-10	TCGA-OR-A5L1-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ec61f9a9-1d55-4395-975b-9dae30944df4	b0f55c34-a9e1-49b6-9835-fa1825bfe350	.	SH3BP1-90	NM_018957	exon18	c.G1770A	p.P590P	AGCCCCGCCCTTG	.	16	14	3	0	G|0.825;A|0.175	0	0	0	0	0	A	38051355	G	A	38051355	2	1	41	1	0	0	0	0	0	0	0	1	14279	1074	38	1		1	SH3BP1	22	38051355	Silent	SNP	G	TCGA-OR-A5L1-01A-11D-A30A-10	1349263	38051355	13253211	63	8897										
TTLL12	23170	bcgsc.ca	37	chr22	43579049	43579049	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0149253731343284	1	1	0.363883847549909	2.63815789473684	0	1	1	0	tgaccttgtagcacagctcgTtccccgggttgggctgctgc	13	13	0	1	rs13058467	byfrequency	TCGA-OR-A5L1-01A-11D-A30A-10	TCGA-OR-A5L1-10A-01D-A30A-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ec61f9a9-1d55-4395-975b-9dae30944df4	b0f55c34-a9e1-49b6-9835-fa1825bfe350	.	TTLL12-90	NM_015140	exon2	c.A284G	p.N95S	AGCTCGTTCCCCG	.	116	7	133	1	T|0.917;C|0.083	0	0	0	0	0	C	43579049	T	C	43579049	3	2	41	1	0	0	0	0	1	0	0	0	16763	1725	60	4	1702	4	TTLL12	22	43579049	Missense_Mutation	SNP	T	TCGA-OR-A5L1-01A-11D-A30A-10	5527694	43579049	7725517	64	8898										
CD99	4267	bcgsc.ca	37	chrX	2644302	2644302	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0149253731343284	1	1	0.363883847549909	2.63815789473684	0	1	1	0	tgtgtgcttcctcctgcagcCgacgccccaggcgtgatccc	11	17	0	1	rs200217367		TCGA-OR-A5L1-01A-11D-A30A-10	TCGA-OR-A5L1-10A-01D-A30A-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ec61f9a9-1d55-4395-975b-9dae30944df4	b0f55c34-a9e1-49b6-9835-fa1825bfe350	.	CD99-40	NM_002414	exon8	c.C363T	p.A121A	TGCAGCCGACGCC	.	162	7	211	0	.	0	0	0	0	0	T	2644302	C	T	2644302	2	4	41	1	0	0	0	0	0	0	0	1	3056	666	23	1		1	CD99	23	2644302	Silent	SNP	C	TCGA-OR-A5L1-01A-11D-A30A-10		2644302	152626258	65	8899										
MAGEC1	9947	bcgsc.ca	37	chrX	140994913	140994913	+	Missense_Mutation	SNP	C	C	A													0.0149253731343284	1	1	0.363883847549909	2.63815789473684	0	1	1	0	ctcctcagggggaggactccCtgtctcctcactactttcct					novel		TCGA-OR-A5L1-01A-11D-A30A-10	TCGA-OR-A5L1-10A-01D-A30A-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ec61f9a9-1d55-4395-975b-9dae30944df4	b0f55c34-a9e1-49b6-9835-fa1825bfe350	.	MAGEC1-133	NM_005462	exon4	c.C1723A	p.L575M	GACTCCCTGTCTC	.	47	33	98	4	.	0	0	0	0	0	A	140994913	C	A	140994913	3	1	41	1	0	0	0	0	1	0	0	0	9208	680	24	3	1729	3	MAGEC1	23	140994913	Missense_Mutation	SNP	C	TCGA-OR-A5L1-01A-11D-A30A-10	138350611	140994913	14275647	66	8900	100	2	4	45		3	2	27	N	C_A	5.627049e-05
MAGEC1	9947	ucsc.edu;bcgsc.ca	37	chrX	140994923	140994923	+	Missense_Mutation	SNP	A	A	T													0.0149253731343284	1	1	0.363883847549909	2.63815789473684	0	1	1	0	ggaggactccctgtctcctcActactttcctcagagccctc					novel		TCGA-OR-A5L1-01A-11D-A30A-10	TCGA-OR-A5L1-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ec61f9a9-1d55-4395-975b-9dae30944df4	b0f55c34-a9e1-49b6-9835-fa1825bfe350	.	MAGEC1-133	NM_005462	exon4	c.A1733T	p.H578L	CTCCTCACTACTT	.	34	18	104	1	.	0	0	0	0	0	T	140994923	A	T	140994923	3	4	41	1	0	0	0	0	1	0	0	0	9208	159	6	5	1739	5	MAGEC1	23	140994923	Missense_Mutation	SNP	A	TCGA-OR-A5L1-01A-11D-A30A-10	10	140994923	14275637	67	8901	100	2	4	45		3	2	27	N	C_A	5.627049e-05
MAGEC1	9947	bcgsc.ca	37	chrX	140994939	140994939	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0149253731343284	1	1	0.363883847549909	2.63815789473684	0	1	1	0	cctcactactttcctcagagCcctcagggggaggactccct	9	16	3	1	novel		TCGA-OR-A5L1-01A-11D-A30A-10	TCGA-OR-A5L1-10A-01D-A30A-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ec61f9a9-1d55-4395-975b-9dae30944df4	b0f55c34-a9e1-49b6-9835-fa1825bfe350	.	MAGEC1-133	NM_005462	exon4	c.C1749T	p.S583S	TCAGAGCCCTCAG	.	26	5	122	0	.	0	0	0	0	0	T	140994939	C	T	140994939	2	4	41	1	0	0	0	0	0	0	0	1	9208	738	26	3		3	MAGEC1	23	140994939	Silent	SNP	C	TCGA-OR-A5L1-01A-11D-A30A-10	16	140994939	14275621	68	8902			4	45		3	2	27	N	C_A	5.627049e-05
IRAK1	3654	bcgsc.ca	37	chrX	153284192	153284192	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0149253731343284	1	1	0.363883847549909	2.63815789473684	0	1	1	0	agaggggccagcaaaacggaAaggggcgggctccctgcagg	18	10	0	1	rs1059702	byfrequency	TCGA-OR-A5L1-01A-11D-A30A-10	TCGA-OR-A5L1-10A-01D-A30A-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ec61f9a9-1d55-4395-975b-9dae30944df4	b0f55c34-a9e1-49b6-9835-fa1825bfe350	.	IRAK1-1074	NM_001569	exon5	c.T587C	p.F196S	AACGGAAAGGGGC	.	389	9	427	5	0|0.003;T|0.067	0	0	0	0	0	G	153284192	A	G	153284192	3	3	41	1	0	0	0	0	1	0	0	0	7842	14	1	4	1591	4	IRAK1	23	153284192	Missense_Mutation	SNP	A	TCGA-OR-A5L1-01A-11D-A30A-10	12289253	153284192	1986368	69	8903										
CCNL2	81669	broad.mit.edu;bcgsc.ca	37	chr1	1334591	1334591	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0851063829787234	20	0.290990223633901	1.512	3.29651162790698	0.576219512195122	0.00946526301035661	0.146711576660527	0	tccccgatcagcaccccctgCgaccctgagggtgcgccccc	10	21	1	1	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	CCNL2-70	NM_030937	exon1	c.G96T	p.S32S	CCCCTGCGACCCT	.	71	39	57	1	.	0	0	0	0	0	A	1334591	C	A	1334591	2	1	42	1	0	0	0	0	0	0	0	1	2938	755	27	2		2	CCNL2	1	1334591	Silent	SNP	C	TCGA-OR-A5L2-01A-11D-A30A-10		1334591	247916030	1	8904										
C1orf158	93190	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	12815709	12815709	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0851063829787234	20	0.290990223633901	1.512	3.29651162790698	0.576219512195122	0.00946526301035661	0.146711576660527	0	agaaaagaatacatccccttCccagaccacagaccagacca	5	15	0	5	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	C1orf158-92	NM_152290	exon2	c.C171A	p.F57L	CCCCTTCCCAGAC	.	354	162	340	1	.	0	0	0	0	0	A	12815709	C	A	12815709	3	1	42	1	0	0	0	0	1	0	0	0	2013	854	30	3	177	3	C1orf158	1	12815709	Missense_Mutation	SNP	C	TCGA-OR-A5L2-01A-11D-A30A-10	11481118	12815709	236434912	2	8905										
NIPAL3	57185	broad.mit.edu	37	chr1	24766704	24766704	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0851063829787234	20	0.290990223633901	1.512	3.29651162790698	0.576219512195122	0.00946526301035661	0.146711576660527	0	tggcgatcttcgggcacctcGtggtcagcattgcacttaac	11	12	2	0	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	NIPAL3-90	NM_020448	exon3	c.G136T	p.V46L	CACCTCGTGGTCA	.	127	4	85	1	.	0	0	0	0	0	T	24766704	G	T	24766704	3	4	42	1	0	0	0	0	1	0	0	0	10455	1145	40	2	142	2	NIPAL3	1	24766704	Missense_Mutation	SNP	G	TCGA-OR-A5L2-01A-11D-A30A-10	11950995	24766704	224483917	3	8906										
MACF1	23499	ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	39851188	39851188	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0851063829787234	20	0.290990223633901	1.512	3.29651162790698	0.576219512195122	0.00946526301035661	0.146711576660527	0	gggcatcctaacaggccctgGagatgtctctctgtccacca	10	14	2	1	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	MACF1-165	NM_012090	exon53	c.G7745T	p.G2582V	GCCCTGGAGATGT	.	166	65	172	2	.	0	0	0	0	0	T	39851188	G	T	39851188	3	4	42	1	0	0	0	0	1	0	0	0	9172	1174	41	3	14102	3	MACF1	1	39851188	Missense_Mutation	SNP	G	TCGA-OR-A5L2-01A-11D-A30A-10	15084484	39851188	209399433	4	8907										
RPRD2	23248	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	150443166	150443166	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0851063829787234	20	0.290990223633901	1.512	3.29651162790698	0.576219512195122	0.00946526301035661	0.146711576660527	0	gggaagaaatctgccctccaGtgcccaaccttttattccca	7	14	1	1	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	RPRD2-23	NM_015203	exon11	c.G1742A	p.S581N	CCTCCAGTGCCCA	.	80	40	66	0	.	0	0	0	0	0	A	150443166	G	A	150443166	3	1	42	1	0	0	0	0	1	0	0	0	13652	1029	36	3	1784	3	RPRD2	1	150443166	Missense_Mutation	SNP	G	TCGA-OR-A5L2-01A-11D-A30A-10	110591978	150443166	98807455	5	8908										
INTS3	65123	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	153721204	153721204	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0851063829787234	20	0.290990223633901	1.512	3.29651162790698	0.576219512195122	0.00946526301035661	0.146711576660527	0	aaatatctggttggcagaaaGtgttctggatatcctgacag	11	6	2	2	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	INTS3-93	NM_023015	exon6	c.G557C	p.S186T	CAGAAAGTGTTCT	.	197	55	129	2	.	0	0	0	0	0	C	153721204	G	C	153721204	3	2	42	1	0	0	0	0	1	0	0	0	7800	1029	36	3	579	3	INTS3	1	153721204	Missense_Mutation	SNP	G	TCGA-OR-A5L2-01A-11D-A30A-10	3278038	153721204	95529417	6	8909										
KCNN3	3782	hgsc.bcm.edu	37	chr1	154842250	154842250	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0851063829787234	20	0.290990223633901	1.512	3.29651162790698	0.576219512195122	0.00946526301035661	0.146711576660527	0	gctgctgctgctgaagctgcGgaggctgaggctgcagcgag	18	10	0	2	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	KCNN3-91	NM_001204087	exon1	c.C191A	p.P64Q	AGCTGCGGAGGCT	.	60	11	14	0	.	0	0	0	0	0	T	154842250	G	T	154842250	3	4	42	1	0	0	0	0	1	0	0	0	8101	1116	39	2	2058	2	KCNN3	1	154842250	Missense_Mutation	SNP	G	TCGA-OR-A5L2-01A-11D-A30A-10	1121046	154842250	94408371	7	8910										
HAPLN2	60484	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	156593357	156593357	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0851063829787234	20	0.290990223633901	1.512	3.29651162790698	0.576219512195122	0.00946526301035661	0.146711576660527	0	accatcttccacaaagcccaAggagacccaggtaagacccc	7	16	1	2	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	HAPLN2-90	NM_021817	exon3	c.A75G	p.Q25Q	AGCCCAAGGAGAC	.	53	6	67	0	.	0	0	0	0	0	G	156593357	A	G	156593357	2	3	42	1	0	0	0	0	0	0	0	1	6976	69	3	4		4	HAPLN2	1	156593357	Silent	SNP	A	TCGA-OR-A5L2-01A-11D-A30A-10	1751107	156593357	92657264	8	8911										
GPA33	10223	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	167042639	167042639	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0851063829787234	20	0.290990223633901	1.512	3.29651162790698	0.576219512195122	0.00946526301035661	0.146711576660527	0	taccgtatgagtgaggaggaGcttatcccattgaataagtc	11	7	0	3	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	GPA33-90	NM_005814	exon2	c.C181A	p.L61I	GGAGGAGCTTATC	.	130	29	145	0	.	0	0	0	0	0	T	167042639	G	T	167042639	3	4	42	1	0	0	0	0	1	0	0	0	6606	971	34	3	802	3	GPA33	1	167042639	Missense_Mutation	SNP	G	TCGA-OR-A5L2-01A-11D-A30A-10	10449282	167042639	82207982	9	8912										
TNN	63923	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	175046673	175046673	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0851063829787234	20	0.290990223633901	1.512	3.29651162790698	0.576219512195122	0.00946526301035661	0.146711576660527	0	cagcaacaaggagcaacaggTcactgtcagccacacctaca	8	14	2	0	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	TNN-138	NM_022093	exon2	c.T119A	p.V40D	AACAGGTCACTGT	.	144	57	145	0	.	0	0	0	0	0	A	175046673	T	A	175046673	3	1	42	1	0	0	0	0	1	0	0	0	16360	1667	58	5	121	5	TNN	1	175046673	Missense_Mutation	SNP	T	TCGA-OR-A5L2-01A-11D-A30A-10	8004034	175046673	74203948	10	8913										
ZNF281	23528	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	200378016	200378016	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0851063829787234	20	0.290990223633901	1.512	3.29651162790698	0.576219512195122	0.00946526301035661	0.146711576660527	0	catgtctccgcaggtgatagGagcttcggaaagcagcacta	12	10	1	1	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	ZNF281-154	NM_012482	exon2	c.C818T	p.S273F	TGATAGGAGCTTC	.	179	35	159	0	.	0	0	0	0	0	A	200378016	G	A	200378016	3	1	42	1	0	0	0	0	1	0	0	0	17855	1174	41	3	1873	3	ZNF281	1	200378016	Missense_Mutation	SNP	G	TCGA-OR-A5L2-01A-11D-A30A-10	25331343	200378016	48872605	11	8914										
FLVCR1	28982	broad.mit.edu	37	chr1	213037122	213037122	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0851063829787234	20	0.290990223633901	1.512	3.29651162790698	0.576219512195122	0.00946526301035661	0.146711576660527	0	tttagtacccaacacacagaAtgacacaaatctcctggctt	5	12	1	2	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	FLVCR1-90	NM_014053	exon2	c.A794G	p.N265S	CACAGAATGACAC	.	103	4	113	0	.	0	0	0	0	0	G	213037122	A	G	213037122	3	3	42	1	0	0	0	0	1	0	0	0	5964	101	4	4	800	4	FLVCR1	1	213037122	Missense_Mutation	SNP	A	TCGA-OR-A5L2-01A-11D-A30A-10	12659106	213037122	36213499	12	8915										
CENPF	1063	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	214816433	214816433	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0851063829787234	20	0.290990223633901	1.512	3.29651162790698	0.576219512195122	0.00946526301035661	0.146711576660527	0	aataaggaaattcaagagctCgagcagttattaagttctga	9	5	2	2	rs200241672	alternate_allele	TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	CENPF-567	NM_016343	exon12	c.C4752T	p.L1584L	AGAGCTCGAGCAG	.	102	47	102	0	C|0.999;G|0.001	0	0	0	0	0	T	214816433	C	T	214816433	2	4	42	1	0	0	0	0	0	0	0	1	3237	871	31	1		1	CENPF	1	214816433	Silent	SNP	C	TCGA-OR-A5L2-01A-11D-A30A-10	1779311	214816433	34434188	13	8916										
USH2A	7399	broad.mit.edu	37	chr1	216363571	216363571	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0851063829787234	20	0.290990223633901	1.512	3.29651162790698	0.576219512195122	0.00946526301035661	0.146711576660527	0	taaaacttgcttacctgctgCtaaagtttgtcctgctcccg	7	12	0	0	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	USH2A-115	NM_206933	exon20	c.G4390A	p.A1464T	CTGCTGCTAAAGT	.	67	4	81	0	.	0	0	0	0	0	T	216363571	C	T	216363571	3	4	42	1	0	0	0	0	1	0	0	0	17074	797	28	3	11444	3	USH2A	1	216363571	Missense_Mutation	SNP	C	TCGA-OR-A5L2-01A-11D-A30A-10	1547138	216363571	32887050	14	8917										
OBSCN	84033	hgsc.bcm.edu	37	chr1	228399799	228399799	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0851063829787234	20	0.290990223633901	1.512	3.29651162790698	0.576219512195122	0.00946526301035661	0.146711576660527	0	gtggacgcggaggccgcgtgCgccgagcaggcgccgcactt	18	14	0	0	rs11582369	byfrequency	TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	OBSCN-403	NM_001271223	exon2	c.C315T	p.C105C	CGCGTGCGCCGAG	.	23	9	1	0	C|0.943;T|0.057	0	0	0	0	0	T	228399799	C	T	228399799	2	4	42	1	0	0	0	0	0	0	0	1	10841	776	27	1		1	OBSCN	1	228399799	Silent	SNP	C	TCGA-OR-A5L2-01A-11D-A30A-10	12036228	228399799	20850822	15	8918										
OBSCN	84033	hgsc.bcm.edu	37	chr1	228504670	228504670	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0851063829787234	20	0.290990223633901	1.512	3.29651162790698	0.576219512195122	0.00946526301035661	0.146711576660527	0	gcgacgccgtggcctctgcgCggctcaccgtgctgggtggg	18	14	2	0	rs11810627	byfrequency	TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	OBSCN-403	NM_001271223	exon62	c.C16417T	p.R5473W	TCTGCGCGGCTCA	.	64	53	4	0	C|0.643;T|0.357	0	0	0	0	0	T	228504670	C	T	228504670	3	4	42	1	0	0	0	0	1	0	0	0	10841	759	27	1	13744	1	OBSCN	1	228504670	Missense_Mutation	SNP	C	TCGA-OR-A5L2-01A-11D-A30A-10	104871	228504670	20745951	16	8919										
OBSCN	84033	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	228563506	228563506	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0851063829787234	20	0.290990223633901	1.512	3.29651162790698	0.576219512195122	0.00946526301035661	0.146711576660527	0	tacggccctgtgacctacatTgtgcagtgcagcctagaagg	12	11	0	2	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	OBSCN-403	NM_001271223	exon109	c.T25638C	p.I8546I	CTACATTGTGCAG	.	208	82	204	1	.	0	0	0	0	0	C	228563506	T	C	228563506	2	2	42	1	0	0	0	0	0	0	0	1	10841	1800	63	4		4	OBSCN	1	228563506	Silent	SNP	T	TCGA-OR-A5L2-01A-11D-A30A-10	58836	228563506	20687115	17	8920										
PCNXL2	80003	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	233388165	233388165	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0851063829787234	20	0.290990223633901	1.512	3.29651162790698	0.576219512195122	0.00946526301035661	0.146711576660527	0	cttgtacagatgtttcaggcCcactgatgacttgcaagaca	9	10	1	4	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	PCNXL2-91	NM_014801	exon7	c.G2063C	p.G688A	TCAGGCCCACTGA	.	237	15	229	0	.	0	0	0	0	0	G	233388165	C	G	233388165	3	3	42	1	0	0	0	0	1	0	0	0	11621	623	22	3	4462	3	PCNXL2	1	233388165	Missense_Mutation	SNP	C	TCGA-OR-A5L2-01A-11D-A30A-10	4824659	233388165	15862456	18	8921										
HEATR1	55127	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	236722384	236722384	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0851063829787234	20	0.290990223633901	1.512	3.29651162790698	0.576219512195122	0.00946526301035661	0.146711576660527	0	agatggcaggggattgcccaCcagccctctgatcacaggaa	12	12	2	2	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	HEATR1-93	NM_018072	exon35	c.G4822A	p.V1608M	TGCCCACCAGCCC	.	59	23	27	0	.	0	0	0	0	0	T	236722384	C	T	236722384	3	4	42	1	0	0	0	0	1	0	0	0	7048	507	18	3	1656	3	HEATR1	1	236722384	Missense_Mutation	SNP	C	TCGA-OR-A5L2-01A-11D-A30A-10	3334219	236722384	12528237	19	8922										
CMPK2	129607	hgsc.bcm.edu	37	chr2	7005369	7005369	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0851063829787234	20	0.290990223633901	1.512	3.29651162790698	0.576219512195122	0.00946526301035661	0.146711576660527	0	tgcgggcgtggtgcctcctgAcaggcgcccagcagctcgag	16	14	0	1	rs11678810		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	CMPK2-68	NM_001256478	exon1	c.T459C	p.C153C	CTCCTGACAGGCG	.	6	6	0	0	A|0.003;G|0.997	0	0	0	0	0	G	7005369	A	G	7005369	2	3	42	1	0	0	0	0	0	0	0	1	3587	273	10	4		4	CMPK2	2	7005369	Silent	SNP	A	TCGA-OR-A5L2-01A-11D-A30A-10		7005369	236194004	20	8923										
CPSF3	51692	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	9580674	9580674	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0851063829787234	20	0.290990223633901	1.512	3.29651162790698	0.576219512195122	0.00946526301035661	0.146711576660527	0	cattccaatatactatgcatCatctttggccaagaagtgta	6	9	2	1	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	CPSF3-153	NM_016207	exon8	c.C815T	p.S272L	ATGCATCATCTTT	.	142	45	145	0	.	0	0	0	0	0	T	9580674	C	T	9580674	3	4	42	1	0	0	0	0	1	0	0	0	3832	838	29	3	845	3	CPSF3	2	9580674	Missense_Mutation	SNP	C	TCGA-OR-A5L2-01A-11D-A30A-10	2575305	9580674	233618699	21	8924										
CCDC121	79635	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	27850291	27850291	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0851063829787234	20	0.290990223633901	1.512	3.29651162790698	0.576219512195122	0.00946526301035661	0.146711576660527	0	ttggactttctttgtctcctCctgtaatgtctgtatttctt	6	9	4	0	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	CCDC121-68	NM_001142683	exon2	c.G862A	p.E288K	TCTCCTCCTGTAA	.	48	13	49	0	.	0	0	0	0	0	T	27850291	C	T	27850291	3	4	42	1	0	0	0	0	1	0	0	0	2763	864	30	3	464	3	CCDC121	2	27850291	Missense_Mutation	SNP	C	TCGA-OR-A5L2-01A-11D-A30A-10	18269617	27850291	215349082	22	8925										
FAM179A	165186	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	29274646	29274646	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0851063829787234	20	0.290990223633901	1.512	3.29651162790698	0.576219512195122	0.00946526301035661	0.146711576660527	0	ggtggcctcagtttacccccGgaagcctcaagctgtagagc	12	13	2	1	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	FAM179A-26	NM_199280	exon20	c.G2747A	p.R916Q	ACCCCCGGAAGCC	.	170	16	157	0	.	0	0	0	0	0	A	29274646	G	A	29274646	3	1	42	1	0	0	0	0	1	0	0	0	5521	1116	39	1	2821	1	FAM179A	2	29274646	Missense_Mutation	SNP	G	TCGA-OR-A5L2-01A-11D-A30A-10	1424355	29274646	213924727	23	8926										
C2orf71	388939	broad.mit.edu;bcgsc.ca	37	chr2	29296788	29296788	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0851063829787234	20	0.290990223633901	1.512	3.29651162790698	0.576219512195122	0.00946526301035661	0.146711576660527	0	accctgtgtcttgaacggaaTatccttagccatgtggcttt	9	10	1	1	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	C2orf71-91	NM_001029883	exon1	c.A340G	p.I114V	ACGGAATATCCTT	.	233	10	263	1	.	0	0	0	0	0	C	29296788	T	C	29296788	3	2	42	1	0	0	0	0	1	0	0	0	2197	1406	49	4	3534	4	C2orf71	2	29296788	Missense_Mutation	SNP	T	TCGA-OR-A5L2-01A-11D-A30A-10	22142	29296788	213902585	24	8927										
PLEKHH2	130271	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr2	43984346	43984346	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0851063829787234	20	0.290990223633901	1.512	3.29651162790698	0.576219512195122	0.00946526301035661	0.146711576660527	0	gaatcaaactctaaagcaagTcatagagaaattttatccta	5	7	3	1	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	PLEKHH2-92	NM_172069	exon26	c.T3884A	p.V1295D	AGCAAGTCATAGA	.	108	6	102	0	.	0	0	0	0	0	A	43984346	T	A	43984346	3	1	42	1	0	0	0	0	1	0	0	0	12106	1667	58	5	3982	5	PLEKHH2	2	43984346	Missense_Mutation	SNP	T	TCGA-OR-A5L2-01A-11D-A30A-10	14687558	43984346	199215027	25	8928										
SRBD1	55133	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	45801796	45801796	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0851063829787234	20	0.290990223633901	1.512	3.29651162790698	0.576219512195122	0.00946526301035661	0.146711576660527	0	tgaagtcaagcgtgtctttgTctttagcaatcatatctgct	8	8	5	1	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	SRBD1-90	NM_018079	exon8	c.A1139G	p.D380G	TCTTTGTCTTTAG	.	89	21	90	0	.	0	0	0	0	0	C	45801796	T	C	45801796	3	2	42	1	0	0	0	0	1	0	0	0	15170	1667	58	4	1904	4	SRBD1	2	45801796	Missense_Mutation	SNP	T	TCGA-OR-A5L2-01A-11D-A30A-10	1817450	45801796	197397577	26	8929										
INO80B	83444	hgsc.bcm.edu	37	chr2	74684659	74684659	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0851063829787234	20	0.290990223633901	1.512	3.29651162790698	0.576219512195122	0.00946526301035661	0.146711576660527	0	agcgcctcaccaagactgcgGcgaccagtgggcggggaggc	17	13	1	1	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	INO80B-226	NM_031288	exon5	c.G739A	p.A247T	ACTGCGGCGACCA	.	18	6	5	0	.	0	0	0	0	0	A	74684659	G	A	74684659	3	1	42	1	0	0	0	0	1	0	0	0	7768	1203	42	3	757	3	INO80B	2	74684659	Missense_Mutation	SNP	G	TCGA-OR-A5L2-01A-11D-A30A-10	28882863	74684659	168514714	27	8930										
KRCC1	51315	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	88327571	88327571	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0851063829787234	20	0.290990223633901	1.512	3.29651162790698	0.576219512195122	0.00946526301035661	0.146711576660527	0	gcttagaccgctcctcctctGatttttctctgccttcctct	5	16	3	2	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	KRCC1-69	NM_016618	exon4	c.C512G	p.S171X	TCCTCTGATTTTT	.	52	20	71	0	.	0	0	0	0	0	C	88327571	G	C	88327571	4	2	42	1	0	0	0	0	0	1	0	0	8462	1294	45	3	271	3	KRCC1	2	88327571	Nonsense_Mutation	SNP	G	TCGA-OR-A5L2-01A-11D-A30A-10	13642912	88327571	154871802	28	8931										
CNNM4	26504	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	97475185	97475185	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0851063829787234	20	0.290990223633901	1.512	3.29651162790698	0.576219512195122	0.00946526301035661	0.146711576660527	0	tctgagctgcctgtggtggaCgagaccacaactcttctcaa	10	12	3	2	rs187426899		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	CNNM4-154	NM_020184	exon7	c.C2259T	p.D753D	GGTGGACGAGACC	.	203	86	178	0	C|0.999;T|0.000	0	0	0	0	0	T	97475185	C	T	97475185	2	4	42	1	0	0	0	0	0	0	0	1	3621	535	19	1		1	CNNM4	2	97475185	Silent	SNP	C	TCGA-OR-A5L2-01A-11D-A30A-10	9147614	97475185	145724188	29	8932										
PDCL3	79031	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	101192892	101192892	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0851063829787234	20	0.290990223633901	1.512	3.29651162790698	0.576219512195122	0.00946526301035661	0.146711576660527	0	cctaagaagccgattgaagaCgtgttgctgtcctcagtgcg	12	10	1	3	rs145184150	byfrequency	TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	PDCL3-90	NM_024065	exon6	c.C654T	p.D218D	TGAAGACGTGTTG	.	84	14	92	0	C|0.999;T|0.001	0	0	0	0	0	T	101192892	C	T	101192892	2	4	42	1	0	0	0	0	0	0	0	1	11657	535	19	1		1	PDCL3	2	101192892	Silent	SNP	C	TCGA-OR-A5L2-01A-11D-A30A-10	3717707	101192892	142006481	30	8933										
POU3F3	5455	hgsc.bcm.edu	37	chr2	105472055	105472055	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0851063829787234	20	0.290990223633901	1.512	3.29651162790698	0.576219512195122	0.00946526301035661	0.146711576660527	0	cactcggacgcggcaggggcTggcggcggcgggggtggcgg	24	11	0	0	rs186512421	by1000genomes	TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	POU3F3-45	NM_006236	exon1	c.T87C	p.A29A	AGGGGCTGGCGGC	.	7	6	1	0	T|0.299;C|0.701	0	0	0	0	0	C	105472055	T	C	105472055	2	2	42	1	0	0	0	0	0	0	0	1	12305	1567	55	4		4	POU3F3	2	105472055	Silent	SNP	T	TCGA-OR-A5L2-01A-11D-A30A-10	4279163	105472055	137727318	31	8934										
C2orf40	84417	hgsc.bcm.edu	37	chr2	106682226	106682226	+	Silent	SNP	T	T	C													0.0851063829787234	20	0.290990223633901	1.512	3.29651162790698	0.576219512195122	0.00946526301035661	0.146711576660527	0	tcgcgccccgccgccatggcTgcctcccccgcgcggcctgc					rs4271786		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	C2orf40-90	NM_032411	exon1	c.T6C	p.A2A	CATGGCTGCCTCC	.	11	8	1	0	T|0.765;C|0.235	0	0	0	0	0	C	106682226	T	C	106682226	2	2	42	1	0	0	0	0	0	0	0	1	2171	1567	55	4		4	C2orf40	2	106682226	Silent	SNP	T	TCGA-OR-A5L2-01A-11D-A30A-10	1210171	106682226	136517147	32	8935	101	2								
C2orf40	84417	hgsc.bcm.edu	37	chr2	106682235	106682235	+	Silent	SNP	C	C	G													0.0851063829787234	20	0.290990223633901	1.512	3.29651162790698	0.576219512195122	0.00946526301035661	0.146711576660527	0	gccgccatggctgcctccccCgcgcggcctgctgtcctggc					rs4266035		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	C2orf40-90	NM_032411	exon1	c.C15G	p.P5P	CTCCCCCGCGCGG	.	15	10	1	0	C|0.795;G|0.205	0	0	0	0	0	G	106682235	C	G	106682235	2	3	42	1	0	0	0	0	0	0	0	1	2171	639	23	2		2	C2orf40	2	106682235	Silent	SNP	C	TCGA-OR-A5L2-01A-11D-A30A-10	9	106682235	136517138	33	8936	101	2								
MARCO	8685	broad.mit.edu	37	chr2	119739941	119739941	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0851063829787234	20	0.290990223633901	1.512	3.29651162790698	0.576219512195122	0.00946526301035661	0.146711576660527	0	caggacttccagggagccccGggagtccaggagccacaggc	15	14	0	0	rs202171758		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	MARCO-95	NM_006770	exon12	c.G1018T	p.G340W	AGCCCCGGGAGTC	.	128	4	114	2	.	0	0	0	0	0	T	119739941	G	T	119739941	3	4	42	1	0	0	0	0	1	0	0	0	9339	1116	39	2	1064	2	MARCO	2	119739941	Missense_Mutation	SNP	G	TCGA-OR-A5L2-01A-11D-A30A-10	13057706	119739941	123459432	34	8937										
NR4A2	4929	bcgsc.ca	37	chr2	157185931	157185931	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0851063829787234	20	0.290990223633901	1.512	3.29651162790698	0.576219512195122	0.00946526301035661	0.146711576660527	0	cacagcccctcgttggagggGgagccccgcgacggcggtga	17	14	0	1	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	NR4A2-189	NM_006186	exon3	c.C768A	p.S256S	GGAGGGGGAGCCC	.	67	36	34	1	.	0	0	0	0	0	T	157185931	G	T	157185931	2	4	42	1	0	0	0	0	0	0	0	1	10662	1219	43	3		3	NR4A2	2	157185931	Silent	SNP	G	TCGA-OR-A5L2-01A-11D-A30A-10	37445990	157185931	86013442	35	8938										
LY75	4065	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	160676404	160676404	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0851063829787234	20	0.290990223633901	1.512	3.29651162790698	0.576219512195122	0.00946526301035661	0.146711576660527	0	aatgtgtatatgacagtgggGtcttatcaaaccacataaga	9	6	2	2	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	LY75-90	NM_002349	exon29	c.C3986A	p.T1329N	AGTGGGGTCTTAT	.	54	19	58	0	.	0	0	0	0	0	T	160676404	G	T	160676404	3	4	42	1	0	0	0	0	1	0	0	0	9127	1261	44	3	1210	3	LY75	2	160676404	Missense_Mutation	SNP	G	TCGA-OR-A5L2-01A-11D-A30A-10	3490473	160676404	82522969	36	8939										
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	179445121	179445121	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0851063829787234	20	0.290990223633901	1.512	3.29651162790698	0.576219512195122	0.00946526301035661	0.146711576660527	0	ggttaagatatattttcctgCatcatatttgttcacatttt	5	6	2	1	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	TTN-636	NM_001267550	exon317	c.G66985T	p.A22329S	TTCCTGCATCATA	.	93	34	116	0	.	0	0	0	0	0	A	179445121	C	A	179445121	3	1	42	1	0	0	0	0	1	0	0	0	16773	710	25	3	41178	3	TTN	2	179445121	Missense_Mutation	SNP	C	TCGA-OR-A5L2-01A-11D-A30A-10	18768717	179445121	63754252	37	8940										
MYL1	4632	broad.mit.edu	37	chr2	211179635	211179635	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0851063829787234	20	0.290990223633901	1.512	3.29651162790698	0.576219512195122	0.00946526301035661	0.146711576660527	0	cagttcatccatttagttacCttaatggcagagaggtcaat	8	8	2	1	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	MYL1-91	NM_079420	exon1	c.G132C	p.K44N	AGTTACCTTAATG	.	196	6	175	0	.	0	0	0	0	0	G	211179635	C	G	211179635	3	3	42	1	0	0	0	0	1	0	0	0	10071	695	24	3	512	3	MYL1	2	211179635	Missense_Mutation	SNP	C	TCGA-OR-A5L2-01A-11D-A30A-10	31734514	211179635	32019738	38	8941										
DNAJB2	3300	broad.mit.edu;bcgsc.ca	37	chr2	220149572	220149572	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0851063829787234	20	0.290990223633901	1.512	3.29651162790698	0.576219512195122	0.00946526301035661	0.146711576660527	0	ccgcaggtgggcgggaggcaCagcaccgacggcaggggcgg	21	12	0	0	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	DNAJB2-226	NM_006736	exon9	c.C838G	p.Q280E	GAGGCACAGCACC	.	166	12	161	1	.	0	0	0	0	0	G	220149572	C	G	220149572	3	3	42	1	0	0	0	0	1	0	0	0	4631	479	17	3	868	3	DNAJB2	2	220149572	Missense_Mutation	SNP	C	TCGA-OR-A5L2-01A-11D-A30A-10	8969937	220149572	23049801	39	8942										
SPEG	10290	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	220354432	220354432	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0851063829787234	20	0.290990223633901	1.512	3.29651162790698	0.576219512195122	0.00946526301035661	0.146711576660527	0	ttaaaccagtgtcttcctctActcctgtgtatgtggtgact	8	10	2	1	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	SPEG-383	NM_005876	exon36	c.A8692G	p.T2898A	TCCTCTACTCCTG	.	65	39	55	0	.	0	0	0	0	0	G	220354432	A	G	220354432	3	3	42	1	0	0	0	0	1	0	0	0	15073	391	14	4	8846	4	SPEG	2	220354432	Missense_Mutation	SNP	A	TCGA-OR-A5L2-01A-11D-A30A-10	204860	220354432	22844941	40	8943										
ARPP21	10777	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	35730810	35730810	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0851063829787234	20	0.290990223633901	1.512	3.29651162790698	0.576219512195122	0.00946526301035661	0.146711576660527	0	ttgtttcagattgcagccaaGaatacacggattctacaggc	9	9	2	2	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	ARPP21-93	NM_001267619	exon6	c.G418T	p.E140X	AGCCAAGAATACA	.	276	83	236	2	.	0	0	0	0	0	T	35730810	G	T	35730810	4	4	42	1	0	0	0	0	0	1	0	0	979	943	33	3	449	3	ARPP21	3	35730810	Nonsense_Mutation	SNP	G	TCGA-OR-A5L2-01A-11D-A30A-10		35730810	162291620	41	8944										
MLH1	4292	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr3	37055929	37055929	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0851063829787234	20	0.290990223633901	1.512	3.29651162790698	0.576219512195122	0.00946526301035661	0.146711576660527	0	ctcttttctaatagagaactGatagaaattggatgtgagga	10	4	2	4	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	MLH1-2559	NM_000249	exon9	c.G684C	p.L228L	AGAACTGATAGAA	.	115	9	124	0	.	0	0	0	0	0	C	37055929	G	C	37055929	2	2	42	1	0	0	0	0	0	0	0	1	9645	1277	45	3		3	MLH1	3	37055929	Silent	SNP	G	TCGA-OR-A5L2-01A-11D-A30A-10	1325119	37055929	160966501	42	8945										
LRIG1	26018	hgsc.bcm.edu	37	chr3	66550756	66550756	+	Missense_Mutation	SNP	G	G	C													0.0851063829787234	20	0.290990223633901	1.512	3.29651162790698	0.576219512195122	0.00946526301035661	0.146711576660527	0	ggtcaccggctccagccgaaGcaaaagcagccagagaagga					rs1403625		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	LRIG1-230	NM_015541	exon1	c.C76G	p.L26V	GCCGAAGCAAAAG	.	5	5	0	0	G|0.237;C|0.763	0	0	0	0	0	C	66550756	G	C	66550756	3	2	42	1	0	0	0	0	1	0	0	0	8971	971	34	3	3281	3	LRIG1	3	66550756	Missense_Mutation	SNP	G	TCGA-OR-A5L2-01A-11D-A30A-10	29494827	66550756	131471674	43	8946	102	2								
LRIG1	26018	hgsc.bcm.edu	37	chr3	66550762	66550762	+	Missense_Mutation	SNP	G	G	C													0.0851063829787234	20	0.290990223633901	1.512	3.29651162790698	0.576219512195122	0.00946526301035661	0.146711576660527	0	cggctccagccgaagcaaaaGcagccagagaaggagaaggc					rs1403626	byfrequency	TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	LRIG1-230	NM_015541	exon1	c.C70G	p.L24V	GCAAAAGCAGCCA	.	5	5	0	0	G|0.252;C|0.748	0	0	0	0	0	C	66550762	G	C	66550762	3	2	42	1	0	0	0	0	1	0	0	0	8971	971	34	3	3287	3	LRIG1	3	66550762	Missense_Mutation	SNP	G	TCGA-OR-A5L2-01A-11D-A30A-10	6	66550762	131471668	44	8947	102	2								
CCDC14	64770	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	123650270	123650270	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0851063829787234	20	0.290990223633901	1.512	3.29651162790698	0.576219512195122	0.00946526301035661	0.146711576660527	0	tcatctttctgattttcaatCacttttaacagctcttcatt	2	10	7	1	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	CCDC14-68	NM_022757	exon10	c.G1551A	p.V517V	TTCAATCACTTTT	.	22	4	31	0	.	0	0	0	0	0	T	123650270	C	T	123650270	2	4	42	1	0	0	0	0	0	0	0	1	2779	813	29	3		3	CCDC14	3	123650270	Silent	SNP	C	TCGA-OR-A5L2-01A-11D-A30A-10	57099508	123650270	74372160	45	8948										
CCDC39	339829	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	180372596	180372596	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0851063829787234	20	0.290990223633901	1.512	3.29651162790698	0.576219512195122	0.00946526301035661	0.146711576660527	0	tttcatggtcctgatatgccGttctacattttaaaagttta	6	7	2	1	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	CCDC39-72	NM_181426	exon7	c.C884T	p.T295M	TATGCCGTTCTAC	.	95	20	74	0	.	0	0	0	0	0	A	180372596	G	A	180372596	3	1	42	1	0	0	0	0	1	0	0	0	2817	1145	40	1	1997	1	CCDC39	3	180372596	Missense_Mutation	SNP	G	TCGA-OR-A5L2-01A-11D-A30A-10	56722326	180372596	17649834	46	8949										
MCF2L2	23101	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	chr3	182941972	182941972	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0851063829787234	20	0.290990223633901	1.512	3.29651162790698	0.576219512195122	0.00946526301035661	0.146711576660527	0	tttaaaatatatctgaagatCttctttctaggtgggaaaaa	7	4	4	2	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	MCF2L2-293	NM_015078	exon19	c.G2122C	p.D708H	GAAGATCTTCTTT	.	17	8	16	0	.	0	0	0	0	0	G	182941972	C	G	182941972	3	3	42	1	0	0	0	0	1	0	0	0	9408	913	32	3	1270	3	MCF2L2	3	182941972	Missense_Mutation	SNP	C	TCGA-OR-A5L2-01A-11D-A30A-10	2569376	182941972	15080458	47	8950										
ECE2	9718	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	183975278	183975278	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0851063829787234	20	0.290990223633901	1.512	3.29651162790698	0.576219512195122	0.00946526301035661	0.146711576660527	0	caggttgcgggaacagtgccCtgagctacgagctgttcctc	13	12	0	1	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	ECE2-94	NM_014693	exon2	c.C214G	p.L72V	AGTGCCCTGAGCT	.	98	9	93	0	.	0	0	0	0	0	G	183975278	C	G	183975278	3	3	42	1	0	0	0	0	1	0	0	0	4901	680	24	3	220	3	ECE2	3	183975278	Missense_Mutation	SNP	C	TCGA-OR-A5L2-01A-11D-A30A-10	1033306	183975278	14047152	48	8951										
RTP1	132112	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr3	186917619	186917619	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0851063829787234	20	0.290990223633901	1.512	3.29651162790698	0.576219512195122	0.00946526301035661	0.146711576660527	0	ccagccgccaggacaaccggCggcaccgcggagagttctgc	14	16	1	1	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	RTP1-155	NM_153708	exon2	c.C553T	p.R185W	AACCGGCGGCACC	.	215	26	54	0	.	0	0	0	0	0	T	186917619	C	T	186917619	3	4	42	1	0	0	0	0	1	0	0	0	13768	759	27	1	559	1	RTP1	3	186917619	Missense_Mutation	SNP	C	TCGA-OR-A5L2-01A-11D-A30A-10	2942341	186917619	11104811	49	8952										
TMEM44	93109	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr3	194336340	194336340	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0851063829787234	20	0.290990223633901	1.512	3.29651162790698	0.576219512195122	0.00946526301035661	0.146711576660527	0	tctgcacaggtcaaaagggcTtgggtgtcagggctctctct	13	10	5	0	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	TMEM44-90	NM_001166305	exon8	c.A1011G	p.Q337Q	AAGGGCTTGGGTG	.	129	10	108	0	.	0	0	0	0	0	C	194336340	T	C	194336340	2	2	42	1	0	0	0	0	0	0	0	1	16205	1606	56	4		4	TMEM44	3	194336340	Silent	SNP	T	TCGA-OR-A5L2-01A-11D-A30A-10	7418721	194336340	3686090	50	8953										
GRK4	2868	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr4	2990469	2990469	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0851063829787234	20	0.290990223633901	1.512	3.29651162790698	0.576219512195122	0.00946526301035661	0.146711576660527	0	cccagaaaaggattatagcaGtctttgtgacaagcaaccga	9	9	1	2	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	GRK4-507	NM_182982	exon3	c.G164C	p.S55T	ATAGCAGTCTTTG	.	113	9	80	0	.	0	0	0	0	0	C	2990469	G	C	2990469	3	2	42	1	0	0	0	0	1	0	0	0	6812	1029	36	3	174	3	GRK4	4	2990469	Missense_Mutation	SNP	G	TCGA-OR-A5L2-01A-11D-A30A-10		2990469	188163807	51	8954										
LCORL	254251	hgsc.bcm.edu	37	chr4	18023336	18023336	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0851063829787234	20	0.290990223633901	1.512	3.29651162790698	0.576219512195122	0.00946526301035661	0.146711576660527	0	gcggcggcggcggcagcagcGgcggcggcagcggccattct	20	14	1	0	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	LCORL-90	NM_001166139	exon1	c.C39G	p.A13A	AGCAGCGGCGGCG	.	12	5	2	0	.	0	0	0	0	0	C	18023336	G	C	18023336	2	2	42	1	0	0	0	0	0	0	0	1	8712	1103	39	2		2	LCORL	4	18023336	Silent	SNP	G	TCGA-OR-A5L2-01A-11D-A30A-10	15032867	18023336	173130940	52	8955										
RBM47	54502	hgsc.bcm.edu	37	chr4	40440854	40440854	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0851063829787234	20	0.290990223633901	1.512	3.29651162790698	0.576219512195122	0.00946526301035661	0.146711576660527	0	acgccctcgggcaccttggcGgaggacccggcggccgagtc	16	16	0	0	rs1052153	byfrequency	TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	RBM47-25	NM_001098634	exon4	c.C57G	p.S19S	CTTGGCGGAGGAC	.	7	7	0	0	G|0.794;C|0.206	0	0	0	0	0	C	40440854	G	C	40440854	2	2	42	1	0	0	0	0	0	0	0	1	13176	1103	39	2		2	RBM47	4	40440854	Silent	SNP	G	TCGA-OR-A5L2-01A-11D-A30A-10	22417518	40440854	150713422	53	8956										
ATP8A1	10396	broad.mit.edu	37	chr4	42580310	42580310	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0851063829787234	20	0.290990223633901	1.512	3.29651162790698	0.576219512195122	0.00946526301035661	0.146711576660527	0	tatgcctgggtaaatttcacAacttctaatgtaaccaataa	5	8	2	0	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	ATP8A1-92	NM_001105529	exon12	c.T1095G	p.V365V	TTTCACAACTTCT	.	167	4	102	0	.	0	0	0	0	0	C	42580310	A	C	42580310	2	2	42	1	0	0	0	0	0	0	0	1	1193	117	5	5		5	ATP8A1	4	42580310	Silent	SNP	A	TCGA-OR-A5L2-01A-11D-A30A-10	2139456	42580310	148573966	54	8957										
CORIN	10699	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	47788784	47788784	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0851063829787234	20	0.290990223633901	1.512	3.29651162790698	0.576219512195122	0.00946526301035661	0.146711576660527	0	ccctgggagagaagcatccgTagtccaggctggaacgtgtt	14	10	0	1	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	CORIN-91	NM_006587	exon3	c.A367T	p.T123S	CATCCGTAGTCCA	.	215	32	147	0	.	0	0	0	0	0	A	47788784	T	A	47788784	3	1	42	1	0	0	0	0	1	0	0	0	3758	1638	57	5	2841	5	CORIN	4	47788784	Missense_Mutation	SNP	T	TCGA-OR-A5L2-01A-11D-A30A-10	5208474	47788784	143365492	55	8958										
TEC	7006	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	48172291	48172291	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0851063829787234	20	0.290990223633901	1.512	3.29651162790698	0.576219512195122	0.00946526301035661	0.146711576660527	0	caaaaagattgtatttttcaCatccgggtgctaatttttca	6	7	2	1	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	TEC-1004	NM_003215	exon5	c.G428T	p.C143F	TTTTCACATCCGG	.	194	42	185	0	.	0	0	0	0	0	A	48172291	C	A	48172291	3	1	42	1	0	0	0	0	1	0	0	0	15779	478	17	3	1523	3	TEC	4	48172291	Missense_Mutation	SNP	C	TCGA-OR-A5L2-01A-11D-A30A-10	383507	48172291	142981985	56	8959										
FRAS1	80144	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	79440544	79440544	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0851063829787234	20	0.290990223633901	1.512	3.29651162790698	0.576219512195122	0.00946526301035661	0.146711576660527	0	cctctatatgtgtcctacatCtatgtgacagcccccagggg	9	13	2	1	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	FRAS1-68	NM_025074	exon67	c.C10449G	p.I3483M	CTACATCTATGTG	.	104	42	93	0	.	0	0	0	0	0	G	79440544	C	G	79440544	3	3	42	1	0	0	0	0	1	0	0	0	6061	903	32	3	10790	3	FRAS1	4	79440544	Missense_Mutation	SNP	C	TCGA-OR-A5L2-01A-11D-A30A-10	31268253	79440544	111713732	57	8960										
GK2	2712	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	80327936	80327936	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0851063829787234	20	0.290990223633901	1.512	3.29651162790698	0.576219512195122	0.00946526301035661	0.146711576660527	0	gacaaagcctggggttcaagGctccaaacgcttactccctc	9	14	1	0	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	GK2-94	NM_033214	exon1	c.C1419T	p.S473S	TTCAAGGCTCCAA	.	262	27	170	0	.	0	0	0	0	0	A	80327936	G	A	80327936	2	1	42	1	0	0	0	0	0	0	0	1	6441	1194	42	3		3	GK2	4	80327936	Silent	SNP	G	TCGA-OR-A5L2-01A-11D-A30A-10	887392	80327936	110826340	58	8961										
COQ2	27235	hgsc.bcm.edu	37	chr4	84205872	84205872	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0851063829787234	20	0.290990223633901	1.512	3.29651162790698	0.576219512195122	0.00946526301035661	0.146711576660527	0	cggcagccacgccagtgccaCagcccgcaggccccgcgcga	13	20	0	0	rs6818847	byfrequency	TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	COQ2-92	NM_015697	exon1	c.G196T	p.V66L	GTGCCACAGCCCG	.	7	7	0	0	C|0.324;A|0.676	0	0	0	0	0	A	84205872	C	A	84205872	3	1	42	1	0	0	0	0	1	0	0	0	3751	478	17	3	1097	3	COQ2	4	84205872	Missense_Mutation	SNP	C	TCGA-OR-A5L2-01A-11D-A30A-10	3877936	84205872	106948404	59	8962										
MMRN1	22915	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	90872784	90872784	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0851063829787234	20	0.290990223633901	1.512	3.29651162790698	0.576219512195122	0.00946526301035661	0.146711576660527	0	tcaagctgtagtcggcatccGtgccaaaatgggggcacgtg	14	10	1	0	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	MMRN1-94	NM_007351	exon7	c.G3147A	p.P1049P	GCATCCGTGCCAA	.	145	26	128	0	.	0	0	0	0	0	A	90872784	G	A	90872784	2	1	42	1	0	0	0	0	0	0	0	1	9698	1132	40	1		1	MMRN1	4	90872784	Silent	SNP	G	TCGA-OR-A5L2-01A-11D-A30A-10	6666912	90872784	100281492	60	8963										
C4orf21	55345	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	113505163	113505163	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0851063829787234	20	0.290990223633901	1.512	3.29651162790698	0.576219512195122	0.00946526301035661	0.146711576660527	0	agctggcattcctcataaagTggtatcttttgacttcttaa	7	8	3	1	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	C4orf21-90	NM_018392	exon15	c.A4269G	p.P1423P	ATAAAGTGGTATC	.	66	18	56	0	.	0	0	0	0	0	C	113505163	T	C	113505163	2	2	42	1	0	0	0	0	0	0	0	1	2260	1683	59	4		4	C4orf21	4	113505163	Silent	SNP	T	TCGA-OR-A5L2-01A-11D-A30A-10	22632379	113505163	77649113	61	8964										
QRFPR	84109	broad.mit.edu	37	chr4	122254171	122254171	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0851063829787234	20	0.290990223633901	1.512	3.29651162790698	0.576219512195122	0.00946526301035661	0.146711576660527	0	ggctggtccactcttctaagCagcagatgtgttccttttca	9	11	3	1	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	QRFPR-90	NM_198179	exon4	c.G602A	p.C201Y	TCTAAGCAGCAGA	.	212	8	189	0	.	0	0	0	0	0	T	122254171	C	T	122254171	3	4	42	1	0	0	0	0	1	0	0	0	12913	710	25	3	705	3	QRFPR	4	122254171	Missense_Mutation	SNP	C	TCGA-OR-A5L2-01A-11D-A30A-10	8749008	122254171	68900105	62	8965										
GLRB	2743	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	158074152	158074152	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0851063829787234	20	0.290990223633901	1.512	3.29651162790698	0.576219512195122	0.00946526301035661	0.146711576660527	0	agggactcctgttcatattaGcactttgcaggtaaggataa	10	7	1	0	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	GLRB-92	NM_000824	exon9	c.G1187T	p.S396I	ATATTAGCACTTT	.	81	13	118	0	.	0	0	0	0	0	T	158074152	G	T	158074152	3	4	42	1	0	0	0	0	1	0	0	0	6478	971	34	3	1217	3	GLRB	4	158074152	Missense_Mutation	SNP	G	TCGA-OR-A5L2-01A-11D-A30A-10	35819981	158074152	33080124	63	8966										
DDX60L	91351	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	169369890	169369890	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0851063829787234	20	0.290990223633901	1.512	3.29651162790698	0.576219512195122	0.00946526301035661	0.146711576660527	0	tcagattccagcatccaaaaAcgtttaagttgcttaaaatg	6	8	1	1	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	DDX60L-69	NM_001012967	exon9	c.T1037G	p.V346G	CCAAAAACGTTTA	.	260	37	210	0	.	0	0	0	0	0	C	169369890	A	C	169369890	3	2	42	1	0	0	0	0	1	0	0	0	4385	43	2	5	4203	5	DDX60L	4	169369890	Missense_Mutation	SNP	A	TCGA-OR-A5L2-01A-11D-A30A-10	11295738	169369890	21784386	64	8967										
ACSL1	2180	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	185686036	185686036	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0851063829787234	20	0.290990223633901	1.512	3.29651162790698	0.576219512195122	0.00946526301035661	0.146711576660527	0	agtctccaggcatggtcaggCagcacccggcagtgcactct	12	14	3	0	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	ACSL1-92	NM_001995	exon15	c.G1403A	p.C468Y	GTCAGGCAGCACC	.	157	30	222	0	.	0	0	0	0	0	T	185686036	C	T	185686036	3	4	42	1	0	0	0	0	1	0	0	0	177	710	25	3	721	3	ACSL1	4	185686036	Missense_Mutation	SNP	C	TCGA-OR-A5L2-01A-11D-A30A-10	16316146	185686036	5468240	65	8968										
IRX4	50805	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	1879672	1879672	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0851063829787234	20	0.290990223633901	1.512	3.29651162790698	0.576219512195122	0.00946526301035661	0.146711576660527	0	cgcctcctcctcgcccccctCctcctcctcgccctccgcgt	5	27	0	0	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	IRX4-226	NM_016358	exon4	c.G682T	p.E228X	CCCCCTCCTCCTC	.	145	58	139	1	.	0	0	0	0	0	A	1879672	C	A	1879672	4	1	42	1	0	0	0	0	0	1	0	0	7867	864	30	3	885	3	IRX4	5	1879672	Nonsense_Mutation	SNP	C	TCGA-OR-A5L2-01A-11D-A30A-10		1879672	179035588	66	8969										
FAM173B	134145	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr5	10239180	10239180	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0851063829787234	20	0.290990223633901	1.512	3.29651162790698	0.576219512195122	0.00946526301035661	0.146711576660527	0	atgttttagcagaactcacaAtgcgtccgtccccactaccg	7	14	1	1	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	FAM173B-91	NM_199133	exon2	c.T305A	p.I102N	CTCACAATGCGTC	.	38	17	46	0	.	0	0	0	0	0	T	10239180	A	T	10239180	3	4	42	1	0	0	0	0	1	0	0	0	5510	115	4	5	412	5	FAM173B	5	10239180	Missense_Mutation	SNP	A	TCGA-OR-A5L2-01A-11D-A30A-10	8359508	10239180	170676080	67	8970										
MAP3K1	4214	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	56155597	56155597	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0851063829787234	20	0.290990223633901	1.512	3.29651162790698	0.576219512195122	0.00946526301035661	0.146711576660527	0	tgaaatgaatcacttagcagCtgagtctccaggagaggtcc	11	9	2	4	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	MAP3K1-956	NM_005921	exon3	c.C689T	p.A230V	TAGCAGCTGAGTC	.	128	15	222	0	.	0	0	0	0	0	T	56155597	C	T	56155597	3	4	42	1	0	0	0	0	1	0	0	0	9271	797	28	3	699	3	MAP3K1	5	56155597	Missense_Mutation	SNP	C	TCGA-OR-A5L2-01A-11D-A30A-10	45916417	56155597	124759663	68	8971										
RASGRF2	5924	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr5	80409739	80409739	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0851063829787234	20	0.290990223633901	1.512	3.29651162790698	0.576219512195122	0.00946526301035661	0.146711576660527	0	taaaacgaagtattcaaaaaGgtattatctagcacatttgc	6	6	2	0	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	RASGRF2-725	NM_006909	exon15	c.G2470T	p.A824S	CAAAAAGGTATTA	.	42	14	55	0	.	0	0	0	0	0	T	80409739	G	T	80409739	3	4	42	1	0	0	0	0	1	0	0	0	13108	1014	35	3	2528	3	RASGRF2	5	80409739	Missense_Mutation	SNP	G	TCGA-OR-A5L2-01A-11D-A30A-10	24254142	80409739	100505521	69	8972										
RGMB	285704	hgsc.bcm.edu	37	chr5	98109838	98109838	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0851063829787234	20	0.290990223633901	1.512	3.29651162790698	0.576219512195122	0.00946526301035661	0.146711576660527	0	ccgaggttgagcagcgccgcAgccccgggctctgccccccg	14	19	1	1	rs2662263		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	.	NM_001012761	exon3	c.A187C	p.S63R	CGCCGCAGCCCCG	.	4	4	0	0	T|0.046;G|0.950	0	0	0	0	0	C	98109838	A	C	98109838	3	2	42	1	0	0	0	0	1	0	0	0	13316	188	7	5	193	5	RGMB	5	98109838	Missense_Mutation	SNP	A	TCGA-OR-A5L2-01A-11D-A30A-10	17700099	98109838	82805422	70	8973										
AFF4	27125	hgsc.bcm.edu	37	chr5	132232343	132232343	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0851063829787234	20	0.290990223633901	1.512	3.29651162790698	0.576219512195122	0.00946526301035661	0.146711576660527	0	taggagtttgtgaggaaggaGgaaggctctcactttcatct	13	6	3	1	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	AFF4-229	NM_014423	exon11	c.C1979A	p.P660H	GAAGGAGGAAGGC	.	80	4	120	0	.	0	0	0	0	0	T	132232343	G	T	132232343	3	4	42	1	0	0	0	0	1	0	0	0	359	1000	35	3	1556	3	AFF4	5	132232343	Missense_Mutation	SNP	G	TCGA-OR-A5L2-01A-11D-A30A-10	34122505	132232343	48682917	71	8974										
HARS2	23438	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	140075331	140075331	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0851063829787234	20	0.290990223633901	1.512	3.29651162790698	0.576219512195122	0.00946526301035661	0.146711576660527	0	tctttgctgtaggattttgaCattgctggtcagtttgaccc	10	8	2	2	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	HARS2-90	NM_012208	exon6	c.C534T	p.D178D	TTTTGACATTGCT	.	148	22	190	0	.	0	0	0	0	0	T	140075331	C	T	140075331	2	4	42	1	0	0	0	0	0	0	0	1	6981	477	17	3		3	HARS2	5	140075331	Silent	SNP	C	TCGA-OR-A5L2-01A-11D-A30A-10	7842988	140075331	40839929	72	8975										
PCDHGB7	56099	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr5	140797965	140797965	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0851063829787234	20	0.290990223633901	1.512	3.29651162790698	0.576219512195122	0.00946526301035661	0.146711576660527	0	tcctaacgagtatttctcatTggtggagaaagacaatcctg	9	8	1	2	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	PCDHGB7-29	NM_018927	exon1	c.T539C	p.L180S	TCTCATTGGTGGA	.	122	12	122	0	.	0	0	0	0	0	C	140797965	T	C	140797965	3	2	42	1	0	0	0	0	1	0	0	0	11597	1821	63	4	541	4	PCDHGB7	5	140797965	Missense_Mutation	SNP	T	TCGA-OR-A5L2-01A-11D-A30A-10	722634	140797965	40117295	73	8976										
FLT4	2324	broad.mit.edu;bcgsc.ca	37	chr5	180046752	180046752	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0851063829787234	20	0.290990223633901	1.512	3.29651162790698	0.576219512195122	0.00946526301035661	0.146711576660527	0	caccaccttcccgaaggcgcCgtagccgagcactctccctg	9	19	1	0	rs144045237	alternate_allele	TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	FLT4-1490	NM_182925	exon18	c.G2560A	p.G854S	AGGCGCCGTAGCC	.	242	15	187	1	.	0	0	0	0	0	T	180046752	C	T	180046752	3	4	42	1	0	0	0	0	1	0	0	0	5963	652	23	1	1591	1	FLT4	5	180046752	Missense_Mutation	SNP	C	TCGA-OR-A5L2-01A-11D-A30A-10	39248787	180046752	868508	74	8977										
OR2Y1	134083	bcgsc.ca	37	chr5	180166250	180166250	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0851063829787234	20	0.290990223633901	1.512	3.29651162790698	0.576219512195122	0.00946526301035661	0.146711576660527	0	aaaaaagggcaacaaattttCcctcacgctcagaataattg	6	9	2	1	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	OR2Y1-68	NM_001001657	exon1	c.G809T	p.G270V	AATTTTCCCTCAC	.	33	9	44	1	.	0	0	0	0	0	A	180166250	C	A	180166250	3	1	42	1	0	0	0	0	1	0	0	0	11064	855	30	3	130	3	OR2Y1	5	180166250	Missense_Mutation	SNP	C	TCGA-OR-A5L2-01A-11D-A30A-10	119498	180166250	749010	75	8978										
TXNDC5	81567	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	7904880	7904880	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0851063829787234	20	0.290990223633901	1.512	3.29651162790698	0.576219512195122	0.00946526301035661	0.146711576660527	0	gtccactttagccacatagaCtttggcatcttccatgctgt	7	12	1	1	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	TXNDC5-90	NM_030810	exon2	c.G340A	p.V114I	CATAGACTTTGGC	.	76	13	86	0	.	0	0	0	0	0	T	7904880	C	T	7904880	3	4	42	1	0	0	0	0	1	0	0	0	16837	565	20	3	994	3	TXNDC5	6	7904880	Missense_Mutation	SNP	C	TCGA-OR-A5L2-01A-11D-A30A-10		7904880	163210187	76	8979										
TRIM39	56658	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr6	30297383	30297383	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0851063829787234	20	0.290990223633901	1.512	3.29651162790698	0.576219512195122	0.00946526301035661	0.146711576660527	0	ttgccaagcagctccaggccGtcaagcggaagatccgggat	13	12	1	1	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	TRIM39-161	NM_021253	exon3	c.G289A	p.V97I	CAGGCCGTCAAGC	.	155	13	139	0	.	0	0	0	0	0	A	30297383	G	A	30297383	3	1	42	1	0	0	0	0	1	0	0	0	16551	1145	40	1	291	1	TRIM39	6	30297383	Missense_Mutation	SNP	G	TCGA-OR-A5L2-01A-11D-A30A-10	22392503	30297383	140817684	77	8980										
SKIV2L	6499	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	31927812	31927812	+	Missense_Mutation	SNP	C	C	T													0.0851063829787234	20	0.290990223633901	1.512	3.29651162790698	0.576219512195122	0.00946526301035661	0.146711576660527	0	ccatggcctccctccttgtgCcccagatctgcagcaagaag					novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	SKIV2L-290	NM_006929	exon3	c.C152T	p.A51V	CTTGTGCCCCAGA	.	75	11	81	0	.	0	0	0	0	0	T	31927812	C	T	31927812	3	4	42	1	0	0	0	0	1	0	0	0	14394	739	26	3	162	3	SKIV2L	6	31927812	Missense_Mutation	SNP	C	TCGA-OR-A5L2-01A-11D-A30A-10	1630429	31927812	139187255	78	8981	103	2								
SKIV2L	6499	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	31927815	31927815	+	Missense_Mutation	SNP	C	C	A													0.0851063829787234	20	0.290990223633901	1.512	3.29651162790698	0.576219512195122	0.00946526301035661	0.146711576660527	0	tggcctccctccttgtgcccCagatctgcagcaagaagcag					novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	SKIV2L-290	NM_006929	exon3	c.C155A	p.P52Q	GTGCCCCAGATCT	.	73	10	81	0	.	0	0	0	0	0	A	31927815	C	A	31927815	3	1	42	1	0	0	0	0	1	0	0	0	14394	594	21	3	165	3	SKIV2L	6	31927815	Missense_Mutation	SNP	C	TCGA-OR-A5L2-01A-11D-A30A-10	3	31927815	139187252	79	8982	103	2								
SKIV2L	6499	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	31928995	31928995	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0851063829787234	20	0.290990223633901	1.512	3.29651162790698	0.576219512195122	0.00946526301035661	0.146711576660527	0	tgtccaactccagctcctggActactaagccttagctgtat	7	13	0	0	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	SKIV2L-290	NM_006929	exon8	c.A621G	p.G207G	TCCTGGACTACTA	.	147	15	133	0	.	0	0	0	0	0	G	31928995	A	G	31928995	2	3	42	1	0	0	0	0	0	0	0	1	14394	262	10	4		4	SKIV2L	6	31928995	Silent	SNP	A	TCGA-OR-A5L2-01A-11D-A30A-10	1180	31928995	139186072	80	8983										
HLA-DOB	3112	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr6	32782314	32782314	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0851063829787234	20	0.290990223633901	1.512	3.29651162790698	0.576219512195122	0.00946526301035661	0.146711576660527	0	tagaagcctgtcacagagcaGtgcagcagattatgctggtg	13	8	1	3	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	HLA-DOB-91	NM_002120	exon3	c.C426T	p.H142H	AGAGCAGTGCAGC	.	137	18	134	0	.	0	0	0	0	0	A	32782314	G	A	32782314	2	1	42	1	0	0	0	0	0	0	0	1	7222	1020	36	3		3	HLA-DOB	6	32782314	Silent	SNP	G	TCGA-OR-A5L2-01A-11D-A30A-10	853319	32782314	138332753	81	8984										
NFYA	4800	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	41057410	41057410	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.0851063829787234	20	0.290990223633901	1.512	3.29651162790698	0.576219512195122	0.00946526301035661	0.146711576660527	0	cagacccagcagatcatcatCcagcagccccagacggctgt	9	16	2	3	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	NFYA-226	NM_002505	exon5	c.C402G	p.I134M	CATCATCCAGCAG	.	233	33	178	0	.	0	0	0	0	0	G	41057410	C	G	41057410	3	3	42	1	0	0	0	0	1	0	0	0	10418	845	30	3	416	3	NFYA	6	41057410	Missense_Mutation	SNP	C	TCGA-OR-A5L2-01A-11D-A30A-10	8275096	41057410	130057657	82	8985										
CUL9	23113	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	43181477	43181477	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0851063829787234	20	0.290990223633901	1.512	3.29651162790698	0.576219512195122	0.00946526301035661	0.146711576660527	0	tgcggcttcatgagcctgggCcccagcgcagtggggaggcc	17	13	1	1	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	CUL9-529	NM_015089	exon29	c.C5515G	p.P1839A	CCTGGGCCCCAGC	.	69	37	52	1	.	0	0	0	0	0	G	43181477	C	G	43181477	3	3	42	1	0	0	0	0	1	0	0	0	4067	739	26	3	5625	3	CUL9	6	43181477	Missense_Mutation	SNP	C	TCGA-OR-A5L2-01A-11D-A30A-10	2124067	43181477	127933590	83	8986										
PKHD1	5314	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	51890570	51890570	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0851063829787234	20	0.290990223633901	1.512	3.29651162790698	0.576219512195122	0.00946526301035661	0.146711576660527	0	gagcatccagacaggctcacGttgccctggaaggactgtgt	13	11	1	1	rs147584295	byfrequency	TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	PKHD1-603	NM_170724	exon32	c.C4038T	p.N1346N	GCTCACGTTGCCC	.	134	61	148	0	G|0.999;A|0.001	0	0	0	0	0	A	51890570	G	A	51890570	2	1	42	1	0	0	0	0	0	0	0	1	12000	1136	40	1		1	PKHD1	6	51890570	Silent	SNP	G	TCGA-OR-A5L2-01A-11D-A30A-10	8709093	51890570	119224497	84	8987										
SERINC1	57515	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr6	122772896	122772925	+	Frame_Shift_Del	DEL	ATTCCTACAAAAAAAAAAAAAAAAAAATAT	ATTCCTACAAAAAAAAAAAAAAAAAAATAT	-													0.0851063829787234	20	0.290990223633901	1.512	3.29651162790698	0.576219512195122	0.00946526301035661	0.146711576660527	0	caaaccagatcttggttgtgAttcctacaaaaaaaaaaaaa					novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	ATTCCTACAAAAAAAAAAAAAAAAAAATAT	ATTCCTACAAAAAAAAAAAAAAAAAAATAT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	SERINC1-91	NM_020755	exon7	c.760_763del	p.254_255del	GTTGTGATTCCTA	.	82	12	81	0	.	0	0	0	0	0	-	122772925	ATTCCTACAAAAAAAAAAAAAAAAAAATAT	-	122772896	7	5	42	1	0	1	0	1	0	0	0	0	14114	333	12	0	614	0	SERINC1	6	122772896	Frame_Shift_Del	DEL	ATTCCTACAAAAAAAAAAAAAAAAAAATAT	TCGA-OR-A5L2-01A-11D-A30A-10	70882326	122772896	48342171	85	8988										
LAMA2	3908	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	129465098	129465098	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0851063829787234	20	0.290990223633901	1.512	3.29651162790698	0.576219512195122	0.00946526301035661	0.146711576660527	0	tgccgatgatccttctccagAactgctagaatttacctccg	7	13	1	3	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	LAMA2-162	NM_000426	exon5	c.A692C	p.E231A	CTCCAGAACTGCT	.	71	11	59	0	.	0	0	0	0	0	C	129465098	A	C	129465098	3	2	42	1	0	0	0	0	1	0	0	0	8628	246	9	5	710	5	LAMA2	6	129465098	Missense_Mutation	SNP	A	TCGA-OR-A5L2-01A-11D-A30A-10	6692202	129465098	41649969	86	8989										
MED23	9439	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	131914268	131914268	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0851063829787234	20	0.290990223633901	1.512	3.29651162790698	0.576219512195122	0.00946526301035661	0.146711576660527	0	ttgggaaactcattgaatctCcagtcacagtttggaaaggg	11	7	3	1	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	MED23-24	NM_015979	exon25	c.G3294A	p.W1098X	GAATCTCCAGTCA	.	188	86	209	0	.	0	0	0	0	0	T	131914268	C	T	131914268	4	4	42	1	0	0	0	0	0	1	0	0	9469	856	30	3	861	3	MED23	6	131914268	Nonsense_Mutation	SNP	C	TCGA-OR-A5L2-01A-11D-A30A-10	2449170	131914268	39200799	87	8990										
RADIL	55698	hgsc.bcm.edu	37	chr7	4876135	4876135	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0851063829787234	20	0.290990223633901	1.512	3.29651162790698	0.576219512195122	0.00946526301035661	0.146711576660527	0	gctggtctcactgactgtgcGgcgcaaccggggtggaggag	18	10	1	1	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	RADIL-994	NM_018059	exon3	c.C637T	p.R213C	CTGTGCGGCGCAA	.	49	7	8	0	.	0	0	0	0	0	A	4876135	G	A	4876135	3	1	42	1	0	0	0	0	1	0	0	0	13032	1116	39	1	2642	1	RADIL	7	4876135	Missense_Mutation	SNP	G	TCGA-OR-A5L2-01A-11D-A30A-10		4876135	154262528	88	8991										
TNRC18	84629	hgsc.bcm.edu	37	chr7	5372406	5372406	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0851063829787234	20	0.290990223633901	1.512	3.29651162790698	0.576219512195122	0.00946526301035661	0.146711576660527	0	tgcaggaagatgcgctcgctGcggcgccgcgtccacaggtc	15	14	0	1	rs13238738	byfrequency	TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	TNRC18-46	NM_001080495	exon19	c.C5994A	p.R1998R	CTCGCTGCGGCGC	.	15	10	0	0	G|0.411;T|0.589	0	0	0	0	0	T	5372406	G	T	5372406	2	4	42	1	0	0	0	0	0	0	0	1	16376	1306	46	3		3	TNRC18	7	5372406	Silent	SNP	G	TCGA-OR-A5L2-01A-11D-A30A-10	496271	5372406	153766257	89	8992										
USP42	84132	hgsc.bcm.edu	37	chr7	6193521	6193521	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0851063829787234	20	0.290990223633901	1.512	3.29651162790698	0.576219512195122	0.00946526301035661	0.146711576660527	0	caagaaggctccgccgccccGcgatcccggcacccccgcta	10	21	0	1	rs61729726	byfrequency	TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	USP42-659	NM_032172	exon15	c.G2336C	p.R779P	CGCCCCGCGATCC	.	27	12	3	0	G|0.456;C|0.544	0	0	0	0	0	C	6193521	G	C	6193521	3	2	42	1	0	0	0	0	1	0	0	0	17111	1087	38	2		2	USP42	7	6193521	Missense_Mutation	SNP	G	TCGA-OR-A5L2-01A-11D-A30A-10	821115	6193521	152945142	90	8993										
C7orf31	136895	broad.mit.edu;bcgsc.ca	37	chr7	25208036	25208036	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0851063829787234	20	0.290990223633901	1.512	3.29651162790698	0.576219512195122	0.00946526301035661	0.146711576660527	0	ccaccatactctctttcagcGccccaaggaagcctacattg	6	16	2	0	rs148188847		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	C7orf31-90	NM_138811	exon3	c.C183T	p.G61G	TTCAGCGCCCCAA	.	221	12	167	1	G|1.000;A|0.000	0	0	0	0	0	A	25208036	G	A	25208036	2	1	42	1	0	0	0	0	0	0	0	1	2393	1074	38	1		1	C7orf31	7	25208036	Silent	SNP	G	TCGA-OR-A5L2-01A-11D-A30A-10	19014515	25208036	133930627	91	8994										
HOXA4	3201	hgsc.bcm.edu	37	chr7	27170145	27170145	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0851063829787234	20	0.290990223633901	1.512	3.29651162790698	0.576219512195122	0.00946526301035661	0.146711576660527	0	cggcgcgtagtaggaggcagTgggctctcggccgccgcccg	18	14	1	0	rs6944345		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	HOXA4-153	NM_002141	exon1	c.A208C	p.T70P	AGGCAGTGGGCTC	.	5	5	0	0	T|0.037;G|0.963	0	0	0	0	0	G	27170145	T	G	27170145	3	3	42	1	0	0	0	0	1	0	0	0	7315	1696	59	5	762	5	HOXA4	7	27170145	Missense_Mutation	SNP	T	TCGA-OR-A5L2-01A-11D-A30A-10	1962109	27170145	131968518	92	8995										
ADCYAP1R1	117	broad.mit.edu;bcgsc.ca	37	chr7	31123819	31123819	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0851063829787234	20	0.290990223633901	1.512	3.29651162790698	0.576219512195122	0.00946526301035661	0.146711576660527	0	ggaacccttccctcattactTtgatgcctgtgggtttgatg	10	10	1	2	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	ADCYAP1R1-91	NM_001118	exon7	c.T392A	p.F131Y	ATTACTTTGATGC	.	219	7	152	0	.	0	0	0	0	0	A	31123819	T	A	31123819	3	1	42	1	0	0	0	0	1	0	0	0	303	1841	64	5	414	5	ADCYAP1R1	7	31123819	Missense_Mutation	SNP	T	TCGA-OR-A5L2-01A-11D-A30A-10	3953674	31123819	128014844	93	8996										
RFC2	5982	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	73649931	73649931	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0851063829787234	20	0.290990223633901	1.512	3.29651162790698	0.576219512195122	0.00946526301035661	0.146711576660527	0	actcgaaagatgttgccaatGatatcttctggtgagtagcc	10	8	2	3	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	RFC2-229	NM_181471	exon10	c.C885T	p.I295I	GCCAATGATATCT	.	168	55	114	0	.	0	0	0	0	0	A	73649931	G	A	73649931	2	1	42	1	0	0	0	0	0	0	0	1	13280	1280	45	3		3	RFC2	7	73649931	Silent	SNP	G	TCGA-OR-A5L2-01A-11D-A30A-10	42526112	73649931	85488732	94	8997										
TRRAP	8295	broad.mit.edu	37	chr7	98529263	98529263	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0851063829787234	20	0.290990223633901	1.512	3.29651162790698	0.576219512195122	0.00946526301035661	0.146711576660527	0	ggtcactgggaagagtgtcaCggtgatcatggaaccccaca	13	10	3	2	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	TRRAP-923	NM_001244580	exon26	c.C3827T	p.T1276M	GTGTCACGGTGAT	.	119	7	121	2	.	0	0	0	0	0	T	98529263	C	T	98529263	3	4	42	1	0	0	0	0	1	0	0	0	16639	536	19	1	3925	1	TRRAP	7	98529263	Missense_Mutation	SNP	C	TCGA-OR-A5L2-01A-11D-A30A-10	24879332	98529263	60609400	95	8998										
MOSPD3	64598	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	100212602	100212602	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0851063829787234	20	0.290990223633901	1.512	3.29651162790698	0.576219512195122	0.00946526301035661	0.146711576660527	0	gaactcggcagccagctgccTcaagtcctgcacgtctccct	9	17	2	0	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	MOSPD3-92	NM_001040098	exon5	c.T624A	p.P208P	GCTGCCTCAAGTC	.	100	20	75	0	.	0	0	0	0	0	A	100212602	T	A	100212602	2	1	42	1	0	0	0	0	0	0	0	1	9745	1538	54	5		5	MOSPD3	7	100212602	Silent	SNP	T	TCGA-OR-A5L2-01A-11D-A30A-10	1683339	100212602	58926061	96	8999										
FAM115A	9747	broad.mit.edu	37	chr7	143556212	143556212	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0851063829787234	20	0.290990223633901	1.512	3.29651162790698	0.576219512195122	0.00946526301035661	0.146711576660527	0	cgttgatgagctcctgcactGactccagatggcacatgatg	11	11	0	5	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	FAM115A-68	NM_001206938	exon7	c.C2210A	p.S737X	TGCACTGACTCCA	.	410	19	238	1	.	0	0	0	0	0	T	143556212	G	T	143556212	4	4	42	1	0	0	0	0	0	1	0	0	5421	1294	45	3	567	3	FAM115A	7	143556212	Nonsense_Mutation	SNP	G	TCGA-OR-A5L2-01A-11D-A30A-10	43343610	143556212	15582451	97	9000										
MYOM2	9172	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	2040266	2040266	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0851063829787234	20	0.290990223633901	1.512	3.29651162790698	0.576219512195122	0.00946526301035661	0.146711576660527	0	gacctaagcatgaggaggacCtgctgggctactacgtggac	14	10	0	1	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	MYOM2-95	NM_003970	exon16	c.C1921A	p.L641M	GAGGACCTGCTGG	.	265	126	218	1	.	0	0	0	0	0	A	2040266	C	A	2040266	3	1	42	1	0	0	0	0	1	0	0	0	10120	680	24	3	1979	3	MYOM2	8	2040266	Missense_Mutation	SNP	C	TCGA-OR-A5L2-01A-11D-A30A-10		2040266	144323756	98	9001										
SGK223	0	broad.mit.edu	37	chr8	8239069	8239069	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0851063829787234	20	0.290990223633901	1.512	3.29651162790698	0.576219512195122	0.00946526301035661	0.146711576660527	0	tccaggcggcagttctcaggCctgggaggcaggcgcggtgg	19	11	1	0	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	.	NM_001080826	exon1	c.G189T	p.R63S	CTCAGGCCTGGGA	.	92	9	44	1	.	0	0	0	0	0	A	8239069	C	A	8239069	3	1	42	1	0	0	0	0	1	0	0	0	14245	738	26	3	4039	3	SGK223	8	8239069	Missense_Mutation	SNP	C	TCGA-OR-A5L2-01A-11D-A30A-10	6198803	8239069	138124953	99	9002										
COL22A1	169044	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr8	139793209	139793209	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0851063829787234	20	0.290990223633901	1.512	3.29651162790698	0.576219512195122	0.00946526301035661	0.146711576660527	0	tctctcccaggggggccgggCaggcccagggaaccctaaag	15	14	1	0	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	COL22A1-103	NM_152888	exon13	c.G1611T	p.L537L	GCCGGGCAGGCCC	.	76	39	33	0	.	0	0	0	0	0	A	139793209	C	A	139793209	2	1	42	1	0	0	0	0	0	0	0	1	3687	697	25	3		3	COL22A1	8	139793209	Silent	SNP	C	TCGA-OR-A5L2-01A-11D-A30A-10	131554140	139793209	6570813	100	9003										
FAM83H	286077	hgsc.bcm.edu	37	chr8	144808866	144808866	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0851063829787234	20	0.290990223633901	1.512	3.29651162790698	0.576219512195122	0.00946526301035661	0.146711576660527	0	ggggcaccggactgctcctgCgctccggcacggggggcacc	17	16	0	0	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	FAM83H-92	NM_198488	exon5	c.G2765A	p.R922H	CTCCTGCGCTCCG	.	34	12	6	0	.	0	0	0	0	0	T	144808866	C	T	144808866	3	4	42	1	0	0	0	0	1	0	0	0	5659	768	27	1	778	1	FAM83H	8	144808866	Missense_Mutation	SNP	C	TCGA-OR-A5L2-01A-11D-A30A-10	5015657	144808866	1555156	101	9004										
PLEC	5339	hgsc.bcm.edu	37	chr8	144998169	144998169	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0851063829787234	20	0.290990223633901	1.512	3.29651162790698	0.576219512195122	0.00946526301035661	0.146711576660527	0	cgccgccgctcctcctccgcCgccagctgccgctgcctcgc	10	24	0	0	rs1140522	byfrequency	TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	PLEC-141	NM_201380	exon31	c.G6339A	p.A2113A	CTCCGCCGCCAGC	.	12	8	0	0	C|0.740;T|0.260	0	0	0	0	0	T	144998169	C	T	144998169	2	4	42	1	0	0	0	0	0	0	0	1	12081	639	23	1		1	PLEC	8	144998169	Silent	SNP	C	TCGA-OR-A5L2-01A-11D-A30A-10	189303	144998169	1365853	102	9005										
PLEC	5339	hgsc.bcm.edu	37	chr8	144998190	144998190	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0851063829787234	20	0.290990223633901	1.512	3.29651162790698	0.576219512195122	0.00946526301035661	0.146711576660527	0	gccagctgccgctgcctcgcAgcctccagctcggcctgctc	11	20	0	0	rs2857829	byfrequency	TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	PLEC-141	NM_201380	exon31	c.T6318C	p.A2106A	CCTCGCAGCCTCC	.	22	15	5	0	A|0.738;G|0.262	0	0	0	0	0	G	144998190	A	G	144998190	2	3	42	1	0	0	0	0	0	0	0	1	12081	175	7	4		4	PLEC	8	144998190	Silent	SNP	A	TCGA-OR-A5L2-01A-11D-A30A-10	21	144998190	1365832	103	9006										
PLEC	5339	hgsc.bcm.edu	37	chr8	145001784	145001784	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0851063829787234	20	0.290990223633901	1.512	3.29651162790698	0.576219512195122	0.00946526301035661	0.146711576660527	0	agcctgccagcgctcaagcaActgggcgacccgctcccgcc	11	19	1	0	rs3135109	byfrequency	TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	PLEC-141	NM_201380	exon27	c.T3961C	p.L1321L	CAAGCAACTGGGC	.	56	40	0	0	G|0.246;A|0.754	0	0	0	0	0	G	145001784	A	G	145001784	2	3	42	1	0	0	0	0	0	0	0	1	12081	40	2	4		4	PLEC	8	145001784	Silent	SNP	A	TCGA-OR-A5L2-01A-11D-A30A-10	3594	145001784	1362238	104	9007										
ERMP1	79956	hgsc.bcm.edu	37	chr9	5832728	5832728	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0851063829787234	20	0.290990223633901	1.512	3.29651162790698	0.576219512195122	0.00946526301035661	0.146711576660527	0	aactccccgcggtgtccagcGgccccgcgtagcacgagctg	13	17	0	0	rs1131727	byfrequency	TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	ERMP1-69	NM_024896	exon1	c.C300G	p.A100A	TCCAGCGGCCCCG	.	91	86	2	0	G|0.572;C|0.428	0	0	0	0	0	C	5832728	G	C	5832728	2	2	42	1	0	0	0	0	0	0	0	1	5249	1103	39	2		2	ERMP1	9	5832728	Silent	SNP	G	TCGA-OR-A5L2-01A-11D-A30A-10		5832728	135380703	105	9008										
UHRF2	115426	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	6460639	6460639	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0851063829787234	20	0.290990223633901	1.512	3.29651162790698	0.576219512195122	0.00946526301035661	0.146711576660527	0	ccacgagctagaaccattttGaaatggaatgaactaaatgt	8	7	0	3	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	UHRF2-721	NM_152896	exon4	c.G711C	p.L237F	CATTTTGAAATGG	.	85	11	67	0	.	0	0	0	0	0	C	6460639	G	C	6460639	3	2	42	1	0	0	0	0	1	0	0	0	17008	1281	45	3	725	3	UHRF2	9	6460639	Missense_Mutation	SNP	G	TCGA-OR-A5L2-01A-11D-A30A-10	627911	6460639	134752792	106	9009										
UHRF2	115426	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr9	6460721	6460721	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0851063829787234	20	0.290990223633901	1.512	3.29651162790698	0.576219512195122	0.00946526301035661	0.146711576660527	0	gacaaagaggattctggtttGatgcagaaattaccacattg	10	6	1	3	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	UHRF2-721	NM_152896	exon4	c.G793C	p.D265H	TGGTTTGATGCAG	.	110	12	87	0	.	0	0	0	0	0	C	6460721	G	C	6460721	3	2	42	1	0	0	0	0	1	0	0	0	17008	1290	45	3	807	3	UHRF2	9	6460721	Missense_Mutation	SNP	G	TCGA-OR-A5L2-01A-11D-A30A-10	82	6460721	134752710	107	9010										
AQP7	364	ucsc.edu	37	chr9	33385287	33385287	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0851063829787234	20	0.290990223633901	1.512	3.29651162790698	0.576219512195122	0.00946526301035661	0.146711576660527	0	ccaccaccagttctccccatTgctgcaggcaagaggcagag	10	15	1	2	rs74557595		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	AQP7-90	NM_001170	exon8	c.A745G	p.N249D	CCCCATTGCTGCA	.	34	10	36	3	.	0	0	0	0	0	C	33385287	T	C	33385287	3	2	42	1	0	0	0	0	1	0	0	0	831	1826	63	4	287	4	AQP7	9	33385287	Missense_Mutation	SNP	T	TCGA-OR-A5L2-01A-11D-A30A-10	26924566	33385287	107828144	108	9011										
TRPM3	80036	broad.mit.edu;bcgsc.ca	37	chr9	73457979	73457979	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0851063829787234	20	0.290990223633901	1.512	3.29651162790698	0.576219512195122	0.00946526301035661	0.146711576660527	0	cagggggcaatacctatggtGcatatctttcctcgagactt	10	10	1	1	rs146744968	alternate_allele	TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	TRPM3-521	NM_001007471	exon5	c.C741G	p.C247W	TATGGTGCATATC	.	123	6	83	0	G|1.000;A|0.000	0	0	0	0	0	C	73457979	G	C	73457979	3	2	42	1	0	0	0	0	1	0	0	0	16625	1311	46	3	4589	3	TRPM3	9	73457979	Missense_Mutation	SNP	G	TCGA-OR-A5L2-01A-11D-A30A-10	40072692	73457979	67755452	109	9012										
GADD45G	10912	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr9	92220393	92220393	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0851063829787234	20	0.290990223633901	1.512	3.29651162790698	0.576219512195122	0.00946526301035661	0.146711576660527	0	atgagttgctgctgtcggcgCagcgtcagggctgcctcact	14	12	2	1	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	GADD45G-514	NM_006705	exon2	c.C100T	p.Q34X	TCGGCGCAGCGTC	.	83	37	54	0	.	0	0	0	0	0	T	92220393	C	T	92220393	4	4	42	1	0	0	0	0	0	1	0	0	6202	711	25	3	106	3	GADD45G	9	92220393	Nonsense_Mutation	SNP	C	TCGA-OR-A5L2-01A-11D-A30A-10	18762414	92220393	48993038	110	9013										
BAAT	570	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr9	104124861	104124861	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0851063829787234	20	0.290990223633901	1.512	3.29651162790698	0.576219512195122	0.00946526301035661	0.146711576660527	0	ttgaggcacagcacagaggaGaatagggaggttctatcagg	15	6	2	3	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	BAAT-228	NM_001127610	exon4	c.C1106A	p.S369Y	AGAGGAGAATAGG	.	194	79	173	1	.	0	0	0	0	0	T	104124861	G	T	104124861	3	4	42	1	0	0	0	0	1	0	0	0	1281	942	33	3	154	3	BAAT	9	104124861	Missense_Mutation	SNP	G	TCGA-OR-A5L2-01A-11D-A30A-10	11904468	104124861	37088570	111	9014										
OR13C3	138803	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr9	107298937	107298937	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0851063829787234	20	0.290990223633901	1.512	3.29651162790698	0.576219512195122	0.00946526301035661	0.146711576660527	0	gagcaaagtaaacaatctcaAtctttgggtatccagaaaga	8	7	2	2	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	OR13C3-69	NM_001001961	exon1	c.T158C	p.I53T	ATCTCAATCTTTG	.	183	32	168	1	.	0	0	0	0	0	G	107298937	A	G	107298937	3	3	42	1	0	0	0	0	1	0	0	0	10964	101	4	4	889	4	OR13C3	9	107298937	Missense_Mutation	SNP	A	TCGA-OR-A5L2-01A-11D-A30A-10	3174076	107298937	33914494	112	9015										
DFNB31	25861	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr9	117185706	117185706	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0851063829787234	20	0.290990223633901	1.512	3.29651162790698	0.576219512195122	0.00946526301035661	0.146711576660527	0	cggggcctgggggctgccgcGccttcatggactcaatctca	14	14	3	0	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	DFNB31-95	NM_001173425	exon7	c.C1514T	p.A505V	TGCCGCGCCTTCA	.	187	47	166	0	.	0	0	0	0	0	A	117185706	G	A	117185706	3	1	42	1	0	0	0	0	1	0	0	0	4466	1087	38	1	1233	1	DFNB31	9	117185706	Missense_Mutation	SNP	G	TCGA-OR-A5L2-01A-11D-A30A-10	9886769	117185706	24027725	113	9016										
TRIM32	22954	ucsc.edu	37	chr9	119460913	119460913	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0851063829787234	20	0.290990223633901	1.512	3.29651162790698	0.576219512195122	0.00946526301035661	0.146711576660527	0	ttggacaagctgttaagaagCcccggacagttaacgtggaa	12	8	0	1	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	TRIM32-650	NM_012210	exon2	c.C892G	p.P298A	AAGAAGCCCCGGA	.	85	9	73	2	.	0	0	0	0	0	G	119460913	C	G	119460913	3	3	42	1	0	0	0	0	1	0	0	0	16544	739	26	3	894	3	TRIM32	9	119460913	Missense_Mutation	SNP	C	TCGA-OR-A5L2-01A-11D-A30A-10	2275207	119460913	21752518	114	9017										
CRB2	286204	hgsc.bcm.edu	37	chr9	126136139	126136139	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0851063829787234	20	0.290990223633901	1.512	3.29651162790698	0.576219512195122	0.00946526301035661	0.146711576660527	0	cgcccgtggccgctgtcacaCgcaccccgacggccgcttcg	12	20	1	0	rs73571431		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	CRB2-91	NM_173689	exon10	c.C3329T	p.T1110M	GTCACACGCACCC	.	12	4	0	0	C|0.875;T|0.125	0	0	0	0	0	T	126136139	C	T	126136139	3	4	42	1	0	0	0	0	1	0	0	0	3855	536	19	1	3367	1	CRB2	9	126136139	Missense_Mutation	SNP	C	TCGA-OR-A5L2-01A-11D-A30A-10	6675226	126136139	15077292	115	9018										
USP20	10868	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	132637739	132637739	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0851063829787234	20	0.290990223633901	1.512	3.29651162790698	0.576219512195122	0.00946526301035661	0.146711576660527	0	ggccccatcaccaaccagacCttcctctgctcccacggagg	8	19	2	1	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	USP20-658	NM_001008563	exon20	c.C2199T	p.T733T	CCAGACCTTCCTC	.	122	16	99	1	.	0	0	0	0	0	T	132637739	C	T	132637739	2	4	42	1	0	0	0	0	0	0	0	1	17090	668	24	3		3	USP20	9	132637739	Silent	SNP	C	TCGA-OR-A5L2-01A-11D-A30A-10	6501600	132637739	8575692	116	9019										
ABL1	25	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr9	133760173	133760173	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0851063829787234	20	0.290990223633901	1.512	3.29651162790698	0.576219512195122	0.00946526301035661	0.146711576660527	0	cctgcctcgggcctcccccaCaaggaagaagctggaaaggg	13	14	0	1	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	ABL1-3810	NM_007313	exon11	c.C2553T	p.H851H	CCCCCACAAGGAA	.	171	51	168	0	.	0	0	0	0	0	T	133760173	C	T	133760173	2	4	42	1	0	0	0	0	0	0	0	1	92	477	17	3		3	ABL1	9	133760173	Silent	SNP	C	TCGA-OR-A5L2-01A-11D-A30A-10	1122434	133760173	7453258	117	9020										
SARDH	1757	broad.mit.edu	37	chr9	136577795	136577795	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0851063829787234	20	0.290990223633901	1.512	3.29651162790698	0.576219512195122	0.00946526301035661	0.146711576660527	0	gcccatggatgatccagtggGccagctcctgcccacagcca	11	16	0	1	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	SARDH-90	NM_007101	exon10	c.C1274A	p.A425D	CAGTGGGCCAGCT	.	53	8	36	2	.	0	0	0	0	0	T	136577795	G	T	136577795	3	4	42	1	0	0	0	0	1	0	0	0	13876	1203	42	3	1530	3	SARDH	9	136577795	Missense_Mutation	SNP	G	TCGA-OR-A5L2-01A-11D-A30A-10	2817622	136577795	4635636	118	9021										
LIPN	643418	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr10	90528645	90528645	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0851063829787234	20	0.290990223633901	1.512	3.29651162790698	0.576219512195122	0.00946526301035661	0.146711576660527	0	attcaaatatcccacgggcaTttttaccaggttttttctac	5	10	2	0	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	.	NM_001102469	exon5	c.T632C	p.I211T	CGGGCATTTTTAC	.	68	33	68	0	.	0	0	0	0	0	C	90528645	T	C	90528645	3	2	42	1	0	0	0	0	1	0	0	0	8852	1493	52	4	650	4	LIPN	10	90528645	Missense_Mutation	SNP	T	TCGA-OR-A5L2-01A-11D-A30A-10		90528645	45006102	119	9022										
IFIT1B	439996	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	91143636	91143636	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0851063829787234	20	0.290990223633901	1.512	3.29651162790698	0.576219512195122	0.00946526301035661	0.146711576660527	0	aatcaccgtctatcgcctggAtaaatttaacacagcatcag	6	11	3	0	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	IFIT1B-90	NM_001010987	exon2	c.A566T	p.D189V	GCCTGGATAAATT	.	79	12	80	0	.	0	0	0	0	0	T	91143636	A	T	91143636	3	4	42	1	0	0	0	0	1	0	0	0	7543	333	12	5	572	5	IFIT1B	10	91143636	Missense_Mutation	SNP	A	TCGA-OR-A5L2-01A-11D-A30A-10	614991	91143636	44391111	120	9023										
PLCE1	51196	broad.mit.edu;bcgsc.ca	37	chr10	95931233	95931233	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0851063829787234	20	0.290990223633901	1.512	3.29651162790698	0.576219512195122	0.00946526301035661	0.146711576660527	0	agcacaatgcccttgaagatCtggtgatgaggtttaatgag	12	6	1	5	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	PLCE1-229	NM_016341	exon4	c.C1789G	p.L597V	GAAGATCTGGTGA	.	269	9	252	0	.	0	0	0	0	0	G	95931233	C	G	95931233	3	3	42	1	0	0	0	0	1	0	0	0	12063	912	32	3	2085	3	PLCE1	10	95931233	Missense_Mutation	SNP	C	TCGA-OR-A5L2-01A-11D-A30A-10	4787597	95931233	39603514	121	9024										
CCDC147	159686	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	106159171	106159171	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0851063829787234	20	0.290990223633901	1.512	3.29651162790698	0.576219512195122	0.00946526301035661	0.146711576660527	0	gagacaaaacactttattgaAaagcaagaagctgaagagag	10	5	0	5	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	CCDC147-71	NM_001008723	exon12	c.A1728T	p.E576D	TATTGAAAAGCAA	.	89	15	101	0	.	0	0	0	0	0	T	106159171	A	T	106159171	3	4	42	1	0	0	0	0	1	0	0	0	2787	11	1	5	1774	5	CCDC147	10	106159171	Missense_Mutation	SNP	A	TCGA-OR-A5L2-01A-11D-A30A-10	10227938	106159171	29375576	122	9025										
TCF7L2	6934	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr10	114711350	114711350	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0851063829787234	20	0.290990223633901	1.512	3.29651162790698	0.576219512195122	0.00946526301035661	0.146711576660527	0	cctccccaacggatcgctctCgcccaccgcccgaaccgtaa	7	21	1	0	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	TCF7L2-586	NM_001198526	exon3	c.C365A	p.S122X	CGCTCTCGCCCAC	.	114	26	114	0	.	0	0	0	0	0	A	114711350	C	A	114711350	4	1	42	1	0	0	0	0	0	1	0	0	15735	893	31	2	375	2	TCF7L2	10	114711350	Nonsense_Mutation	SNP	C	TCGA-OR-A5L2-01A-11D-A30A-10	8552179	114711350	20823397	123	9026										
MUC2	4583	broad.mit.edu	37	chr11	1093413	1093413	+	Silent	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0851063829787234	20	0.290990223633901	1.512	3.29651162790698	0.576219512195122	0.00946526301035661	0.146711576660527	0	ggcacacagaccccaaccacGacacccatcaccaccaccac	4	22	1	1	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	MUC2-90	NM_002457	exon30	c.G5232T	p.T1744T	AACCACGACACCC	.	160	6	122	0	.	0	0	0	0	0	T	1093413	G	T	1093413	2	4	42	1	0	0	0	0	0	0	0	1	10003	1045	37	2		2	MUC2	11	1093413	Silent	SNP	G	TCGA-OR-A5L2-01A-11D-A30A-10		1093413	133913103	124	9027										
MUC5B	727897	bcgsc.ca	37	chr11	1268449	1268449	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0851063829787234	20	0.290990223633901	1.512	3.29651162790698	0.576219512195122	0.00946526301035661	0.146711576660527	0	ggaccacccacacacccccaGtgccgaacaccacggccacc	7	22	0	0	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	.	NM_002458	exon31	c.G10339A	p.V3447M	CCCCCAGTGCCGA	.	913	82	728	2	.	0	0	0	0	0	A	1268449	G	A	1268449	3	1	42	1	0	0	0	0	1	0	0	0	10007	1029	36	3	10470	3	MUC5B	11	1268449	Missense_Mutation	SNP	G	TCGA-OR-A5L2-01A-11D-A30A-10	175036	1268449	133738067	125	9028										
TH	7054	hgsc.bcm.edu;broad.mit.edu	37	chr11	2189798	2189798	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0851063829787234	20	0.290990223633901	1.512	3.29651162790698	0.576219512195122	0.00946526301035661	0.146711576660527	0	gggcggccaggtcccctcggCgcacctcgaggcgcacgaag	16	16	0	0	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	TH-90	NM_199292	exon4	c.G503A	p.R168H	CCTCGGCGCACCT	.	95	12	22	0	.	0	0	0	0	0	T	2189798	C	T	2189798	3	4	42	1	0	0	0	0	1	0	0	0	15875	768	27	1	1127	1	TH	11	2189798	Missense_Mutation	SNP	C	TCGA-OR-A5L2-01A-11D-A30A-10	921349	2189798	132816718	126	9029										
OR56A3	390083	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	5969056	5969056	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0851063829787234	20	0.290990223633901	1.512	3.29651162790698	0.576219512195122	0.00946526301035661	0.146711576660527	0	accagaaatgtgcttatgacTctgcccatccccatcctttc	5	15	1	2	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	OR56A3-68	NM_001003443	exon1	c.T480C	p.T160T	TATGACTCTGCCC	.	165	42	151	0	.	0	0	0	0	0	C	5969056	T	C	5969056	2	2	42	1	0	0	0	0	0	0	0	1	11163	1538	54	4		4	OR56A3	11	5969056	Silent	SNP	T	TCGA-OR-A5L2-01A-11D-A30A-10	3779258	5969056	129037460	127	9030										
CTR9	9646	broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr11	10796822	10796822	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0851063829787234	20	0.290990223633901	1.512	3.29651162790698	0.576219512195122	0.00946526301035661	0.146711576660527	0	ccccaaaccaaaaaaacgacGtccaccaaaagcagagaaga	6	13	0	2	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	CTR9-92	NM_014633	exon23	c.G2954A	p.R985H	AACGACGTCCACC	.	80	15	77	2	.	0	0	0	0	0	A	10796822	G	A	10796822	3	1	42	1	0	0	0	0	1	0	0	0	4030	1145	40	1	3044	1	CTR9	11	10796822	Missense_Mutation	SNP	G	TCGA-OR-A5L2-01A-11D-A30A-10	4827766	10796822	124209694	128	9031										
OR4C16	219428	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr11	55339779	55339779	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0851063829787234	20	0.290990223633901	1.512	3.29651162790698	0.576219512195122	0.00946526301035661	0.146711576660527	0	acttaagaacccaatgttctTcttccttttctacttatcct	2	12	3	1	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	OR4C16-70	NM_001004701	exon1	c.T176A	p.F59Y	TGTTCTTCTTCCT	.	217	12	159	0	.	0	0	0	0	0	A	55339779	T	A	55339779	3	1	42	1	0	0	0	0	1	0	0	0	11078	1783	62	5	178	5	OR4C16	11	55339779	Missense_Mutation	SNP	T	TCGA-OR-A5L2-01A-11D-A30A-10	44542957	55339779	79666737	129	9032										
OR4C6	219432	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	55432669	55432669	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0851063829787234	20	0.290990223633901	1.512	3.29651162790698	0.576219512195122	0.00946526301035661	0.146711576660527	0	aatcaaaacaatgtgactgaAttcattcttctgggtctcac	6	9	5	2	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	OR4C6-70	NM_001004704	exon1	c.A27C	p.E9D	GACTGAATTCATT	.	33	7	28	0	.	0	0	0	0	0	C	55432669	A	C	55432669	3	2	42	1	0	0	0	0	1	0	0	0	11081	98	4	5	29	5	OR4C6	11	55432669	Missense_Mutation	SNP	A	TCGA-OR-A5L2-01A-11D-A30A-10	92890	55432669	79573847	130	9033										
OR5L2	26338	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	55595126	55595126	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0851063829787234	20	0.290990223633901	1.512	3.29651162790698	0.576219512195122	0.00946526301035661	0.146711576660527	0	cagaagctgcgtgtggagctGacctcttgctgctacttctg	12	11	2	2	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	OR5L2-69	NM_001004739	exon1	c.G432A	p.L144L	GGAGCTGACCTCT	.	238	51	226	1	.	0	0	0	0	0	A	55595126	G	A	55595126	2	1	42	1	0	0	0	0	0	0	0	1	11200	1277	45	3		3	OR5L2	11	55595126	Silent	SNP	G	TCGA-OR-A5L2-01A-11D-A30A-10	162457	55595126	79411390	131	9034										
NRXN2	9379	hgsc.bcm.edu	37	chr11	64480641	64480641	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0851063829787234	20	0.290990223633901	1.512	3.29651162790698	0.576219512195122	0.00946526301035661	0.146711576660527	0	agcttcaggttggccaagagGccgcggaagggcggctcgta	17	10	1	1	rs2518907		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	NRXN2-232	NM_138732	exon2	c.C531T	p.G177G	CAAGAGGCCGCGG	.	4	4	0	0	G|0.449;A|0.551	0	0	0	0	0	A	64480641	G	A	64480641	2	1	42	1	0	0	0	0	0	0	0	1	10695	1190	42	3		3	NRXN2	11	64480641	Silent	SNP	G	TCGA-OR-A5L2-01A-11D-A30A-10	8885515	64480641	70525875	132	9035										
TM7SF2	7108	hgsc.bcm.edu	37	chr11	64880090	64880090	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0851063829787234	20	0.290990223633901	1.512	3.29651162790698	0.576219512195122	0.00946526301035661	0.146711576660527	0	ggtccacccgcgtccctgccGgggctggaggtgctgtggag	18	13	0	0	rs4930284		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	TM7SF2-91	NM_003273	exon2	c.G156C	p.P52P	CCTGCCGGGGCTG	.	10	10	0	0	G|0.005;C|0.995	0	0	0	0	0	C	64880090	G	C	64880090	2	2	42	1	0	0	0	0	0	0	0	1	16011	1103	39	2		2	TM7SF2	11	64880090	Silent	SNP	G	TCGA-OR-A5L2-01A-11D-A30A-10	399449	64880090	70126426	133	9036										
GAL3ST3	89792	hgsc.bcm.edu	37	chr11	65810209	65810209	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0851063829787234	20	0.290990223633901	1.512	3.29651162790698	0.576219512195122	0.00946526301035661	0.146711576660527	0	accttgcggctgggctgccaCggctgcagctgcttggtgcg	16	13	0	0	rs61895584	byfrequency	TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	GAL3ST3-91	NM_033036	exon3	c.G1065A	p.P355P	CTGCCACGGCTGC	.	19	15	0	0	C|0.233;T|0.767	0	0	0	0	0	T	65810209	C	T	65810209	2	4	42	1	0	0	0	0	0	0	0	1	6219	523	19	1		1	GAL3ST3	11	65810209	Silent	SNP	C	TCGA-OR-A5L2-01A-11D-A30A-10	930119	65810209	69196307	134	9037										
TMEM151A	256472	hgsc.bcm.edu	37	chr11	66062588	66062588	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0851063829787234	20	0.290990223633901	1.512	3.29651162790698	0.576219512195122	0.00946526301035661	0.146711576660527	0	gcgcctgggtcttctggctcGtgtcggcggccacgctgtcg	16	14	2	0	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	TMEM151A-90	NM_153266	exon2	c.G871A	p.V291M	TGGCTCGTGTCGG	.	65	32	7	0	.	0	0	0	0	0	A	66062588	G	A	66062588	3	1	42	1	0	0	0	0	1	0	0	0	16107	1145	40	1	877	1	TMEM151A	11	66062588	Missense_Mutation	SNP	G	TCGA-OR-A5L2-01A-11D-A30A-10	252379	66062588	68943928	135	9038										
UNC93B1	81622	broad.mit.edu	37	chr11	67763107	67763107	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0851063829787234	20	0.290990223633901	1.512	3.29651162790698	0.576219512195122	0.00946526301035661	0.146711576660527	0	agtccagtcttgttcagggcActgcccacaccccaaagggc	10	15	2	0	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	.	.	.	.	.	CAGGGCACTGCCC	.	216	4	74	1	.	0	0	0	0	0	G	67763107	A	G	67763107	2	3	42	1	0	0	0	0	0	0	0	1	17035	156	6	4		4	UNC93B1	11	67763107	Silent	SNP	A	TCGA-OR-A5L2-01A-11D-A30A-10	1700519	67763107	67243409	136	9039										
PPFIA1	8500	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr11	70228237	70228237	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0851063829787234	20	0.290990223633901	1.512	3.29651162790698	0.576219512195122	0.00946526301035661	0.146711576660527	0	ttggattctgctacagtcagGacttactcctgctaaagtct	8	10	3	0	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	PPFIA1-228	NM_003626	exon27	c.G3594A	p.R1198R	AGTCAGGACTTAC	.	215	19	76	0	.	0	0	0	0	0	A	70228237	G	A	70228237	2	1	42	1	0	0	0	0	0	0	0	1	12338	1165	41	3		3	PPFIA1	11	70228237	Silent	SNP	G	TCGA-OR-A5L2-01A-11D-A30A-10	2465130	70228237	64778279	137	9040										
SHANK2	22941	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	70333395	70333395	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0851063829787234	20	0.290990223633901	1.512	3.29651162790698	0.576219512195122	0.00946526301035661	0.146711576660527	0	ctggcgggcttggcggggacGtagacggctttgctggcgat	19	9	0	1	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	SHANK2-94	NM_133266	exon10	c.C1239T	p.Y413Y	GGGGACGTAGACG	.	335	82	167	0	.	0	0	0	0	0	A	70333395	G	A	70333395	2	1	42	1	0	0	0	0	0	0	0	1	14300	1140	40	1		1	SHANK2	11	70333395	Silent	SNP	G	TCGA-OR-A5L2-01A-11D-A30A-10	105158	70333395	64673121	138	9041										
WNT11	7481	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr11	75898196	75898196	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0851063829787234	20	0.290990223633901	1.512	3.29651162790698	0.576219512195122	0.00946526301035661	0.146711576660527	0	tacttacagtggcaccgctcGaccacgcggtctgtgtaggg	13	12	1	0	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	WNT11-562	NM_004626	exon5	c.C978T	p.V326V	CCGCTCGACCACG	.	163	14	80	0	.	0	0	0	0	0	A	75898196	G	A	75898196	2	1	42	1	0	0	0	0	0	0	0	1	17422	1045	37	1		1	WNT11	11	75898196	Silent	SNP	G	TCGA-OR-A5L2-01A-11D-A30A-10	5564801	75898196	59108320	139	9042										
B3GNT6	192134	hgsc.bcm.edu	37	chr11	76751543	76751604	+	In_Frame_Del	DEL	TGGAGCGCGCCGGCCTGGCGCCCAGCGGCCACGAGGGCATCCTGGCCCTTCGGCGTGCAGCT	TGGAGCGCGCCGGCCTGGCGCCCAGCGGCCACGAGGGCATCCTGGCCCTTCGGCGTGCAGCT	-													0.0851063829787234	20	0.290990223633901	1.512	3.29651162790698	0.576219512195122	0.00946526301035661	0.146711576660527	0	gcctacatgggcatgtgtctTggagcgcgccggcctggcgc					novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	TGGAGCGCGCCGGCCTGGCGCCCAGCGGCCACGAGGGCATCCTGGCCCTTCGGCGTGCAGCT	TGGAGCGCGCCGGCCTGGCGCCCAGCGGCCACGAGGGCATCCTGGCCCTTCGGCGTGCAGCT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	.	NM_138706	exon3	c.947_1006del	p.316_336del	GTGTCTTGGAGCG	.	25	0	0	0	.	0	0	0	0	0	-	76751604	TGGAGCGCGCCGGCCTGGCGCCCAGCGGCCACGAGGGCATCCTGGCCCTTCGGCGTGCAGCT	-	76751543	7	5	42	1	0	1	0	1	0	0	0	0	1262	1799	63	0	950	0	B3GNT6	11	76751543	In_Frame_Del	DEL	TGGAGCGCGCCGGCCTGGCGCCCAGCGGCCACGAGGGCATCCTGGCCCTTCGGCGTGCAGCT	TCGA-OR-A5L2-01A-11D-A30A-10	853347	76751543	58254973	140	9043										
SIK2	23235	broad.mit.edu	37	chr11	111591721	111591721	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.0851063829787234	20	0.290990223633901	1.512	3.29651162790698	0.576219512195122	0.00946526301035661	0.146711576660527	0	tgtatgaacaaataggaccgGaggcagaccctaacctggcg	12	10	0	2	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	SIK2-783	NM_015191	exon12	c.G1879C	p.E627Q	GGACCGGAGGCAG	.	85	4	78	0	.	0	0	0	0	0	C	111591721	G	C	111591721	3	2	42	1	0	0	0	0	1	0	0	0	14353	1175	41	3	1925	3	SIK2	11	111591721	Missense_Mutation	SNP	G	TCGA-OR-A5L2-01A-11D-A30A-10	34840178	111591721	23414795	141	9044										
USP28	57646	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	113679796	113679796	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0851063829787234	20	0.290990223633901	1.512	3.29651162790698	0.576219512195122	0.00946526301035661	0.146711576660527	0	ctcagataccttgtgatgtaGagtagtcctgtgatgaggag	13	6	1	5	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	USP28-706	NM_020886	exon17	c.C2153G	p.S718C	GATGTAGAGTAGT	.	250	61	283	2	.	0	0	0	0	0	C	113679796	G	C	113679796	3	2	42	1	0	0	0	0	1	0	0	0	17096	942	33	3	1116	3	USP28	11	113679796	Missense_Mutation	SNP	G	TCGA-OR-A5L2-01A-11D-A30A-10	2088075	113679796	21326720	142	9045										
VSIG2	23584	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	124618582	124618582	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0851063829787234	20	0.290990223633901	1.512	3.29651162790698	0.576219512195122	0.00946526301035661	0.146711576660527	0	acaggatgcactgcccatctGgttggtggccacacagcggt	13	12	1	0	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	VSIG2-93	NM_014312	exon5	c.C664T	p.Q222X	CCATCTGGTTGGT	.	149	45	158	1	.	0	0	0	0	0	A	124618582	G	A	124618582	4	1	42	1	0	0	0	0	0	1	0	0	17262	1357	47	3	331	3	VSIG2	11	124618582	Nonsense_Mutation	SNP	G	TCGA-OR-A5L2-01A-11D-A30A-10	10938786	124618582	10387934	143	9046										
FGF23	8074	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr12	4488634	4488634	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0851063829787234	20	0.290990223633901	1.512	3.29651162790698	0.576219512195122	0.00946526301035661	0.146711576660527	0	ggctgtgtacaggtggatcaGgccaccccagctggagccga	15	12	1	0	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	FGF23-660	NM_020638	exon1	c.C115G	p.L39V	GGATCAGGCCACC	.	107	9	54	0	.	0	0	0	0	0	C	4488634	G	C	4488634	3	2	42	1	0	0	0	0	1	0	0	0	5871	991	35	3	652	3	FGF23	12	4488634	Missense_Mutation	SNP	G	TCGA-OR-A5L2-01A-11D-A30A-10		4488634	129363261	144	9047										
SCNN1A	6337	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	6457898	6457898	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0851063829787234	20	0.290990223633901	1.512	3.29651162790698	0.576219512195122	0.00946526301035661	0.146711576660527	0	ccaggcacgacctaccgtgaCagagggagactcagaattgg	13	11	1	4	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	SCNN1A-90	NM_001159576	exon11	c.G1801A	p.V601I	CCGTGACAGAGGG	.	175	24	178	0	.	0	0	0	0	0	T	6457898	C	T	6457898	3	4	42	1	0	0	0	0	1	0	0	0	13962	478	17	3	393	3	SCNN1A	12	6457898	Missense_Mutation	SNP	C	TCGA-OR-A5L2-01A-11D-A30A-10	1969264	6457898	127393997	145	9048										
PTPN6	5777	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr12	7060782	7060782	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0851063829787234	20	0.290990223633901	1.512	3.29651162790698	0.576219512195122	0.00946526301035661	0.146711576660527	0	ggccgcccaggtggtttcacCgagacctcagtgggctggat	15	12	2	1	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	PTPN6-703	NM_080548	exon2	c.C25T	p.R9X	TTTCACCGAGACC	.	115	9	113	0	.	0	0	0	0	0	T	7060782	C	T	7060782	4	4	42	1	0	0	0	0	0	1	0	0	12827	644	23	1	43	1	PTPN6	12	7060782	Nonsense_Mutation	SNP	C	TCGA-OR-A5L2-01A-11D-A30A-10	602884	7060782	126791113	146	9049										
CD163L1	283316	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	7522051	7522051	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0851063829787234	20	0.290990223633901	1.512	3.29651162790698	0.576219512195122	0.00946526301035661	0.146711576660527	0	atgactcatttcctttgcacCgcatgtcatccaaccagatg	6	13	2	2	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	CD163L1-100	NM_174941	exon15	c.G3941A	p.R1314Q	TTGCACCGCATGT	.	88	28	71	1	.	0	0	0	0	0	T	7522051	C	T	7522051	3	4	42	1	0	0	0	0	1	0	0	0	2974	652	23	1	440	1	CD163L1	12	7522051	Missense_Mutation	SNP	C	TCGA-OR-A5L2-01A-11D-A30A-10	461269	7522051	126329844	147	9050										
ARID2	196528	broad.mit.edu	37	chr12	46211485	46211485	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0851063829787234	20	0.290990223633901	1.512	3.29651162790698	0.576219512195122	0.00946526301035661	0.146711576660527	0	aaagttatgggctgtccatgGactttaattcgccaaatgat	9	7	0	1	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	ARID2-100	NM_152641	exon5	c.G451T	p.D151Y	TCCATGGACTTTA	.	33	4	36	0	.	0	0	0	0	0	T	46211485	G	T	46211485	3	4	42	1	0	0	0	0	1	0	0	0	915	1174	41	3	469	3	ARID2	12	46211485	Missense_Mutation	SNP	G	TCGA-OR-A5L2-01A-11D-A30A-10	38689434	46211485	87640410	148	9051										
HDAC7	51564	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	48189737	48189737	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0851063829787234	20	0.290990223633901	1.512	3.29651162790698	0.576219512195122	0.00946526301035661	0.146711576660527	0	attgcgggcagcaaggacacTgtcggcaaggcgaacggggc	17	10	0	0	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	HDAC7-289	NM_015401	exon9	c.A858C	p.T286T	GGACACTGTCGGC	.	122	20	80	0	.	0	0	0	0	0	G	48189737	T	G	48189737	2	3	42	1	0	0	0	0	0	0	0	1	7033	1567	55	5		5	HDAC7	12	48189737	Silent	SNP	T	TCGA-OR-A5L2-01A-11D-A30A-10	1978252	48189737	85662158	149	9052										
TMBIM6	7009	broad.mit.edu;bcgsc.ca	37	chr12	50136045	50136045	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0851063829787234	20	0.290990223633901	1.512	3.29651162790698	0.576219512195122	0.00946526301035661	0.146711576660527	0	ggcggccccgctcttttcggAttggttacctttgggcaggt	14	11	1	0	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	TMBIM6-90	NM_001098576	exon1	c.A126G	p.G42G	TTTCGGATTGGTT	.	81	10	56	1	.	0	0	0	0	0	G	50136045	A	G	50136045	2	3	42	1	0	0	0	0	0	0	0	1	16020	320	12	4		4	TMBIM6	12	50136045	Silent	SNP	A	TCGA-OR-A5L2-01A-11D-A30A-10	1946308	50136045	83715850	150	9053										
KIF5A	3798	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	57976934	57976934	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0851063829787234	20	0.290990223633901	1.512	3.29651162790698	0.576219512195122	0.00946526301035661	0.146711576660527	0	ggaccaggccaagcttttccCtctccaccaagagacagcag	9	15	1	1	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	KIF5A-517	NM_004984	exon28	c.C3071G	p.P1024R	TTTTCCCTCTCCA	.	130	31	90	0	.	0	0	0	0	0	G	57976934	C	G	57976934	3	3	42	1	0	0	0	0	1	0	0	0	8326	681	24	3	3181	3	KIF5A	12	57976934	Missense_Mutation	SNP	C	TCGA-OR-A5L2-01A-11D-A30A-10	7840889	57976934	75874961	151	9054										
SYCP3	50511	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	102122734	102122734	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0851063829787234	20	0.290990223633901	1.512	3.29651162790698	0.576219512195122	0.00946526301035661	0.146711576660527	0	catggattgaagagacttccGaacacttgctatctcttgct	8	10	1	2	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	SYCP3-90	NM_001177949	exon9	c.C682T	p.R228W	ACTTCCGAACACT	.	90	20	71	0	.	0	0	0	0	0	A	102122734	G	A	102122734	3	1	42	1	0	0	0	0	1	0	0	0	15471	1057	37	1	32	1	SYCP3	12	102122734	Missense_Mutation	SNP	G	TCGA-OR-A5L2-01A-11D-A30A-10	44145800	102122734	31729161	152	9055										
MMAB	326625	broad.mit.edu	37	chr12	110011235	110011235	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0851063829787234	20	0.290990223633901	1.512	3.29651162790698	0.576219512195122	0.00946526301035661	0.146711576660527	0	gcgccgaagcacccgcgcagGccaagacggctccccaggcc	13	19	0	1	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	MMAB-90	NM_052845	exon1	c.C51A	p.G17G	GCGCAGGCCAAGA	.	94	12	42	0	.	0	0	0	0	0	T	110011235	G	T	110011235	2	4	42	1	0	0	0	0	0	0	0	1	9668	1190	42	3		3	MMAB	12	110011235	Silent	SNP	G	TCGA-OR-A5L2-01A-11D-A30A-10	7888501	110011235	23840660	153	9056										
LHX5	64211	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr12	113906071	113906071	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0851063829787234	20	0.290990223633901	1.512	3.29651162790698	0.576219512195122	0.00946526301035661	0.146711576660527	0	tggtgcgggggccgcgccgcTtggtgcccgagttctgctcc	17	14	1	0	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	LHX5-90	NM_022363	exon3	c.A536G	p.K179R	CGCCGCTTGGTGC	.	268	14	173	0	.	0	0	0	0	0	C	113906071	T	C	113906071	3	2	42	1	0	0	0	0	1	0	0	0	8797	1609	56	4	684	4	LHX5	12	113906071	Missense_Mutation	SNP	T	TCGA-OR-A5L2-01A-11D-A30A-10	3894836	113906071	19945824	154	9057										
RNFT2	84900	hgsc.bcm.edu	37	chr12	117187907	117187907	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0851063829787234	20	0.290990223633901	1.512	3.29651162790698	0.576219512195122	0.00946526301035661	0.146711576660527	0	caccgccagccccaccaccaTttccaccatggcggccaccg	7	22	0	0	rs111256849	byfrequency	TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	.	NM_001109903	exon4	c.T345C	p.H115H	CCACCATTTCCAC	.	25	14	1	0	T|0.767;C|0.233	0	0	0	0	0	C	117187907	T	C	117187907	2	2	42	1	0	0	0	0	0	0	0	1	13537	1490	52	4		4	RNFT2	12	117187907	Silent	SNP	T	TCGA-OR-A5L2-01A-11D-A30A-10	3281836	117187907	16663988	155	9058										
NOS1	4842	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	117725978	117725978	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0851063829787234	20	0.290990223633901	1.512	3.29651162790698	0.576219512195122	0.00946526301035661	0.146711576660527	0	gcctccttgcatgctgagaaGgatgcatgatggagcccatg	13	10	0	2	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	NOS1-154	NM_000620	exon5	c.C1028T	p.P343L	TGAGAAGGATGCA	.	130	61	104	1	.	0	0	0	0	0	A	117725978	G	A	117725978	3	1	42	1	0	0	0	0	1	0	0	0	10570	1000	35	3	3376	3	NOS1	12	117725978	Missense_Mutation	SNP	G	TCGA-OR-A5L2-01A-11D-A30A-10	538071	117725978	16125917	156	9059										
SRRM4	84530	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	119583269	119583269	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0851063829787234	20	0.290990223633901	1.512	3.29651162790698	0.576219512195122	0.00946526301035661	0.146711576660527	0	cgaggacgttcccaggagtaCgactcaggaaatgacacgtc	12	11	1	1	rs201517536		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	SRRM4-2	NM_194286	exon9	c.C855T	p.Y285Y	GGAGTACGACTCA	.	103	40	102	0	C|1.000;T|0.000	0	0	0	0	0	T	119583269	C	T	119583269	2	4	42	1	0	0	0	0	0	0	0	1	15208	547	19	1		1	SRRM4	12	119583269	Silent	SNP	C	TCGA-OR-A5L2-01A-11D-A30A-10	1857291	119583269	14268626	157	9060										
GCN1L1	10985	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	120589045	120589045	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0851063829787234	20	0.290990223633901	1.512	3.29651162790698	0.576219512195122	0.00946526301035661	0.146711576660527	0	gaggatgcccaggcccttcaCcaggcccgccaggccatagg	13	16	1	0	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	GCN1L1-94	NM_006836	exon34	c.G4213A	p.V1405M	CCTTCACCAGGCC	.	101	15	105	0	.	0	0	0	0	0	T	120589045	C	T	120589045	3	4	42	1	0	0	0	0	1	0	0	0	6319	507	18	3	3902	3	GCN1L1	12	120589045	Missense_Mutation	SNP	C	TCGA-OR-A5L2-01A-11D-A30A-10	1005776	120589045	13262850	158	9061										
CLIP1	6249	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	122812908	122812908	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0851063829787234	20	0.290990223633901	1.512	3.29651162790698	0.576219512195122	0.00946526301035661	0.146711576660527	0	tgacagtcatgtcctcaataCttttttgcagaaaacttgca	6	9	2	2	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	CLIP1-155	NM_001247997	exon16	c.G2933C	p.S978T	TCAATACTTTTTT	.	71	14	50	0	.	0	0	0	0	0	G	122812908	C	G	122812908	3	3	42	1	0	0	0	0	1	0	0	0	3538	565	20	3	1427	3	CLIP1	12	122812908	Missense_Mutation	SNP	C	TCGA-OR-A5L2-01A-11D-A30A-10	2223863	122812908	11038987	159	9062										
RIMBP2	23504	hgsc.bcm.edu	37	chr12	130921471	130921471	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0851063829787234	20	0.290990223633901	1.512	3.29651162790698	0.576219512195122	0.00946526301035661	0.146711576660527	0	accggggtgccctgtggctgTggcaggatgcggctgggtga	20	9	0	1	rs2292663	byfrequency	TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	RIMBP2-142	NM_015347	exon10	c.A1971G	p.P657P	TGGCTGTGGCAGG	.	86	49	2	0	T|0.868;C|0.132	0	0	0	0	0	C	130921471	T	C	130921471	2	2	42	1	0	0	0	0	0	0	0	1	13398	1683	59	4		4	RIMBP2	12	130921471	Silent	SNP	T	TCGA-OR-A5L2-01A-11D-A30A-10	8108563	130921471	2930424	160	9063										
GSX1	219409	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr13	28367932	28367932	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0851063829787234	20	0.290990223633901	1.512	3.29651162790698	0.576219512195122	0.00946526301035661	0.146711576660527	0	ggcagcaaccatcgtggcggCggcggcgggggtgccggtgg	22	11	0	0	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	GSX1-69	NM_145657	exon2	c.C642T	p.G214G	TGGCGGCGGCGGC	.	180	80	98	1	.	0	0	0	0	0	T	28367932	C	T	28367932	2	4	42	1	0	0	0	0	0	0	0	1	6870	755	27	1		1	GSX1	13	28367932	Silent	SNP	C	TCGA-OR-A5L2-01A-11D-A30A-10		28367932	86801946	161	9064										
TEP1	7011	hgsc.bcm.edu;broad.mit.edu	37	chr14	20869174	20869174	+	Frame_Shift_Del	DEL	C	C	-													0.0851063829787234	20	0.290990223633901	1.512	3.29651162790698	0.576219512195122	0.00946526301035661	0.146711576660527	0	tcccagaccgacgctttgttCccccgtaggctcagctcccg					novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	TEP1-95	NM_007110	exon9	c.1518delG	p.G506fs	TTTGTTCCCCCGT	.	221	13	144	0	.	0	0	0	0	0	-	20869174	C	-	20869174	7	5	42	1	0	1	0	1	0	0	0	0	15796	842	30	0	6553	0	TEP1	14	20869174	Frame_Shift_Del	DEL	C	TCGA-OR-A5L2-01A-11D-A30A-10		20869174	86480366	162	9065										
CEBPE	1053	broad.mit.edu	37	chr14	23588089	23588089	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0851063829787234	20	0.290990223633901	1.512	3.29651162790698	0.576219512195122	0.00946526301035661	0.146711576660527	0	ggaaggcaggggttccggggCccttgaggcctctggcctca	17	12	2	1	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	CEBPE-92	NM_001805	exon1	c.G212T	p.G71V	CCGGGGCCCTTGA	.	90	9	63	0	.	0	0	0	0	0	A	23588089	C	A	23588089	3	1	42	1	0	0	0	0	1	0	0	0	3208	739	26	3	641	3	CEBPE	14	23588089	Missense_Mutation	SNP	C	TCGA-OR-A5L2-01A-11D-A30A-10	2718915	23588089	83761451	163	9066										
SAMD4A	23034	hgsc.bcm.edu	37	chr14	55227103	55227103	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0851063829787234	20	0.290990223633901	1.512	3.29651162790698	0.576219512195122	0.00946526301035661	0.146711576660527	0	gccaccccctcggccggggcCagcggggggctccagccgca	16	19	0	0	rs12879706		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	SAMD4A-90	NM_015589	exon6	c.C1401T	p.A467A	CGGGGCCAGCGGG	.	5	5	0	0	C|0.973;T|0.027	0	0	0	0	0	T	55227103	C	T	55227103	2	4	42	1	0	0	0	0	0	0	0	1	13856	581	21	3		3	SAMD4A	14	55227103	Silent	SNP	C	TCGA-OR-A5L2-01A-11D-A30A-10	31639014	55227103	52122437	164	9067										
ALKBH1	8846	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr14	78161095	78161095	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0851063829787234	20	0.290990223633901	1.512	3.29651162790698	0.576219512195122	0.00946526301035661	0.146711576660527	0	acttacctcaggaactctttGctctgttcccacagatcttg	6	13	4	1	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	ALKBH1-228	NM_006020	exon3	c.C441A	p.S147R	CTCTTTGCTCTGT	.	77	6	72	0	.	0	0	0	0	0	T	78161095	G	T	78161095	3	4	42	1	0	0	0	0	1	0	0	0	526	1310	46	3	744	3	ALKBH1	14	78161095	Missense_Mutation	SNP	G	TCGA-OR-A5L2-01A-11D-A30A-10	22933992	78161095	29188445	165	9068										
SNW1	22938	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	78205323	78205323	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0851063829787234	20	0.290990223633901	1.512	3.29651162790698	0.576219512195122	0.00946526301035661	0.146711576660527	0	agttacctctttaatagcttCttcatcgggcctttgcaggt	8	10	3	0	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	SNW1-187	NM_012245	exon4	c.G412T	p.E138X	TAGCTTCTTCATC	.	143	13	134	0	.	0	0	0	0	0	A	78205323	C	A	78205323	4	1	42	1	0	0	0	0	0	1	0	0	14914	922	32	3	1242	3	SNW1	14	78205323	Nonsense_Mutation	SNP	C	TCGA-OR-A5L2-01A-11D-A30A-10	44228	78205323	29144217	166	9069										
DYNC1H1	1778	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr14	102484794	102484794	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0851063829787234	20	0.290990223633901	1.512	3.29651162790698	0.576219512195122	0.00946526301035661	0.146711576660527	0	ctatctgtgcacaggttcctGcgccacgtgcctgtcgtgta	11	13	1	0	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	DYNC1H1-98	NM_001376	exon41	c.G8184A	p.L2728L	GTTCCTGCGCCAC	.	79	7	79	0	.	0	0	0	0	0	A	102484794	G	A	102484794	2	1	42	1	0	0	0	0	0	0	0	1	4852	1306	46	3		3	DYNC1H1	14	102484794	Silent	SNP	G	TCGA-OR-A5L2-01A-11D-A30A-10	24279471	102484794	4864746	167	9070										
CDC42BPB	9578	bcgsc.ca	37	chr14	103447136	103447136	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0851063829787234	20	0.290990223633901	1.512	3.29651162790698	0.576219512195122	0.00946526301035661	0.146711576660527	0	tctcagcacgtcgtcatccaCgtcgaagttggatgtgtcag	11	11	3	0	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	CDC42BPB-581	NM_006035	exon8	c.G1114A	p.V372M	CATCCACGTCGAA	.	166	8	149	0	.	0	0	0	0	0	T	103447136	C	T	103447136	3	4	42	1	0	0	0	0	1	0	0	0	3079	536	19	1	4141	1	CDC42BPB	14	103447136	Missense_Mutation	SNP	C	TCGA-OR-A5L2-01A-11D-A30A-10	962342	103447136	3902404	168	9071										
C14orf180	400258	hgsc.bcm.edu	37	chr14	105055119	105055127	+	Frame_Shift_Del	DEL	GACGGGCAG	GACGGGCAG	-													0.0851063829787234	20	0.290990223633901	1.512	3.29651162790698	0.576219512195122	0.00946526301035661	0.146711576660527	0	gcgcggcctcctgcggctctGacgggcaggacgggcaggac					rs61397088	bycluster;alternate_allele	TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	GACGGGCAG	GACGGGCAG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	C14orf180-492	NM_001008404	exon5	c.482_784del	p.161_161del	GGCTCTGACGGGC	.	18	4	2	0	-|1.000;|0.000	0	0	0	0	0	-	105055127	GACGGGCAG	-	105055119	7	5	42	1	0	1	0	1	0	0	0	0	1767	1285	45	0	496	0	C14orf180	14	105055119	Frame_Shift_Del	DEL	GACGGGCAG	TCGA-OR-A5L2-01A-11D-A30A-10	1607983	105055119	2294421	169	9072										
C15orf59	388135	broad.mit.edu	37	chr15	74032929	74032929	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0851063829787234	20	0.290990223633901	1.512	3.29651162790698	0.576219512195122	0.00946526301035661	0.146711576660527	0	agtggccgtggtccagtcgtCcggctccagttcaaagtcga	13	12	1	0	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	C15orf59-91	NM_001039614	exon2	c.G211T	p.D71Y	AGTCGTCCGGCTC	.	313	7	239	2	.	0	0	0	0	0	A	74032929	C	A	74032929	3	1	42	1	0	0	0	0	1	0	0	0	1811	855	30	3	674	3	C15orf59	15	74032929	Missense_Mutation	SNP	C	TCGA-OR-A5L2-01A-11D-A30A-10		74032929	28498463	170	9073										
CSPG4	1464	broad.mit.edu	37	chr15	75981765	75981765	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0851063829787234	20	0.290990223633901	1.512	3.29651162790698	0.576219512195122	0.00946526301035661	0.146711576660527	0	tggggtgggtcattgacaggGttgacctggatgggcaggag	20	5	1	2	rs149356457	byfrequency	TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	CSPG4-229	NM_001897	exon3	c.C1641A	p.N547K	GACAGGGTTGACC	.	226	9	185	2	G|0.998;T|0.002	0	0	0	0	0	T	75981765	G	T	75981765	3	4	42	1	0	0	0	0	1	0	0	0	3966	1252	44	3	5359	3	CSPG4	15	75981765	Missense_Mutation	SNP	G	TCGA-OR-A5L2-01A-11D-A30A-10	1948836	75981765	26549627	171	9074										
RASGRF1	5923	broad.mit.edu;bcgsc.ca	37	chr15	79290464	79290464	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0851063829787234	20	0.290990223633901	1.512	3.29651162790698	0.576219512195122	0.00946526301035661	0.146711576660527	0	atgttggctgcagccttccgCtcctgggtcaggagctccgg	14	13	1	0	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	RASGRF1-662	NM_002891	exon20	c.G2988C	p.E996D	CTTCCGCTCCTGG	.	223	9	156	0	.	0	0	0	0	0	G	79290464	C	G	79290464	3	3	42	1	0	0	0	0	1	0	0	0	13107	796	28	3	869	3	RASGRF1	15	79290464	Missense_Mutation	SNP	C	TCGA-OR-A5L2-01A-11D-A30A-10	3308699	79290464	23240928	172	9075										
HOMER2	9455	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr15	83527785	83527785	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0851063829787234	20	0.290990223633901	1.512	3.29651162790698	0.576219512195122	0.00946526301035661	0.146711576660527	0	tttaaaacagccttacctctGcgtcaaggcaatcttcagct	6	12	4	0	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	HOMER2-67	NM_199330	exon5	c.C523G	p.Q175E	ACCTCTGCGTCAA	.	123	42	107	0	.	0	0	0	0	0	C	83527785	G	C	83527785	3	2	42	1	0	0	0	0	1	0	0	0	7300	1328	46	3	561	3	HOMER2	15	83527785	Missense_Mutation	SNP	G	TCGA-OR-A5L2-01A-11D-A30A-10	4237321	83527785	19003607	173	9076										
SEC11A	23478	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr15	85230912	85230912	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0851063829787234	20	0.290990223633901	1.512	3.29651162790698	0.576219512195122	0.00946526301035661	0.146711576660527	0	atctctcttccttctatcctAaaaacaacaatttctcccac	0	15	4	0	rs71395463	alternate_allele	TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	SEC11A-23	NM_014300	exon3	c.T255C	p.F85F	TATCCTAAAAACA	.	113	7	92	0	A|0.500;T|0.500	0	0	0	0	0	G	85230912	A	G	85230912	2	3	42	1	0	0	0	0	0	0	0	1	14013	359	13	4		4	SEC11A	15	85230912	Silent	SNP	A	TCGA-OR-A5L2-01A-11D-A30A-10	1703127	85230912	17300480	174	9077										
RCCD1	91433	hgsc.bcm.edu	37	chr15	91500017	91500017	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0851063829787234	20	0.290990223633901	1.512	3.29651162790698	0.576219512195122	0.00946526301035661	0.146711576660527	0	cttcggtttctgcggcttcgGgcaggagctgggctccggac	16	12	1	0	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	RCCD1-90	NM_001017919	exon2	c.G53T	p.G18V	GCTTCGGGCAGGA	.	37	13	4	0	.	0	0	0	0	0	T	91500017	G	T	91500017	3	4	42	1	0	0	0	0	1	0	0	0	13210	1232	43	3	55	3	RCCD1	15	91500017	Missense_Mutation	SNP	G	TCGA-OR-A5L2-01A-11D-A30A-10	6269105	91500017	11031375	175	9078										
C16orf89	146556	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr16	5097933	5097933	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0851063829787234	20	0.290990223633901	1.512	3.29651162790698	0.576219512195122	0.00946526301035661	0.146711576660527	0	cgaaaaatgctgctgatattGaatagctttagataattctt	7	5	1	3	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	C16orf89-92	NM_001098514	exon7	c.C901A	p.Q301K	GATATTGAATAGC	.	39	18	29	0	.	0	0	0	0	0	T	5097933	G	T	5097933	3	4	42	1	0	0	0	0	1	0	0	0	1846	1299	45	3	450	3	C16orf89	16	5097933	Missense_Mutation	SNP	G	TCGA-OR-A5L2-01A-11D-A30A-10		5097933	85256820	176	9079										
ABCC6	368	broad.mit.edu	37	chr16	16302676	16302676	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0851063829787234	20	0.290990223633901	1.512	3.29651162790698	0.576219512195122	0.00946526301035661	0.146711576660527	0	tctcccaagcgaccagaggtCttttggtctcagtggcctcc	10	14	3	1	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	ABCC6-93	NM_001171	exon7	c.G703T	p.D235Y	AGAGGTCTTTTGG	.	310	87	303	2	.	0	0	0	0	0	A	16302676	C	A	16302676	3	1	42	1	0	0	0	0	1	0	0	0	57	913	32	3	3908	3	ABCC6	16	16302676	Missense_Mutation	SNP	C	TCGA-OR-A5L2-01A-11D-A30A-10	11204743	16302676	74052077	177	9080										
CLN3	1201	bcgsc.ca	37	chr16	28502861	28502861	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0851063829787234	20	0.290990223633901	1.512	3.29651162790698	0.576219512195122	0.00946526301035661	0.146711576660527	0	gtccaacagagggagccgggGctccgggacggtctcctccc	15	15	1	1	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	CLN3-90	NM_001042432	exon3	c.C67A	p.P23T	GCCGGGGCTCCGG	.	72	4	86	0	.	0	0	0	0	0	T	28502861	G	T	28502861	3	4	42	1	0	0	0	0	1	0	0	0	3549	1203	42	3	1305	3	CLN3	16	28502861	Missense_Mutation	SNP	G	TCGA-OR-A5L2-01A-11D-A30A-10	12200185	28502861	61851892	178	9081										
VPS35	55737	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr16	46705646	46705646	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0851063829787234	20	0.290990223633901	1.512	3.29651162790698	0.576219512195122	0.00946526301035661	0.146711576660527	0	ctggtcagggtcctcagagcGcagcagatgaatgaagcggc	15	10	2	4	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	VPS35-90	NM_018206	exon12	c.C1495T	p.R499C	CAGAGCGCAGCAG	.	154	29	147	0	.	0	0	0	0	0	A	46705646	G	A	46705646	3	1	42	1	0	0	0	0	1	0	0	0	17241	1087	38	1	919	1	VPS35	16	46705646	Missense_Mutation	SNP	G	TCGA-OR-A5L2-01A-11D-A30A-10	18202785	46705646	43649107	179	9082										
DNAJA2	10294	broad.mit.edu;bcgsc.ca	37	chr16	47005448	47005448	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0851063829787234	20	0.290990223633901	1.512	3.29651162790698	0.576219512195122	0.00946526301035661	0.146711576660527	0	taactcacgcttctcaggatTtgatagtacttcatatgcaa	6	9	3	1	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	DNAJA2-226	NM_005880	exon3	c.A175T	p.N59Y	CAGGATTTGATAG	.	52	17	68	1	.	0	0	0	0	0	A	47005448	T	A	47005448	3	1	42	1	0	0	0	0	1	0	0	0	4623	1841	64	5	1091	5	DNAJA2	16	47005448	Missense_Mutation	SNP	T	TCGA-OR-A5L2-01A-11D-A30A-10	299802	47005448	43349305	180	9083										
ABCC11	85320	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr16	48261750	48261750	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0851063829787234	20	0.290990223633901	1.512	3.29651162790698	0.576219512195122	0.00946526301035661	0.146711576660527	0	tgtctgaggcatcatggactGacagtggagggatggtgttc	16	6	2	2	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	ABCC11-95	NM_033151	exon3	c.C362G	p.S121X	TGGACTGACAGTG	.	111	20	151	0	.	0	0	0	0	0	C	48261750	G	C	48261750	4	2	42	1	0	0	0	0	0	1	0	0	51	1294	45	3	3894	3	ABCC11	16	48261750	Nonsense_Mutation	SNP	G	TCGA-OR-A5L2-01A-11D-A30A-10	1256302	48261750	42093003	181	9084										
CDH5	1003	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr16	66420935	66420935	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0851063829787234	20	0.290990223633901	1.512	3.29651162790698	0.576219512195122	0.00946526301035661	0.146711576660527	0	catcaaagttcatgacgtgaAcgacaactggcctgtgttca	9	10	3	2	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	CDH5-525	NM_001795	exon3	c.A434G	p.N145S	ACGTGAACGACAA	.	345	18	272	0	.	0	0	0	0	0	G	66420935	A	G	66420935	3	3	42	1	0	0	0	0	1	0	0	0	3119	43	2	4	440	4	CDH5	16	66420935	Missense_Mutation	SNP	A	TCGA-OR-A5L2-01A-11D-A30A-10	18159185	66420935	23933818	182	9085										
KLHDC4	54758	bcgsc.ca	37	chr16	87788864	87788864	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0851063829787234	20	0.290990223633901	1.512	3.29651162790698	0.576219512195122	0.00946526301035661	0.146711576660527	0	tggtccaggtgtcctttctgGtattgtagacatagagctcg	12	8	1	2	rs2303771	byfrequency	TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	KLHDC4-182	NM_001184856	exon4	c.C305T	p.T102I	TTTCTGGTATTGT	.	145	8	188	0	G|0.634;A|0.366	0	0	0	0	0	A	87788864	G	A	87788864	3	1	42	1	0	0	0	0	1	0	0	0	8379	1261	44	3	1289	3	KLHDC4	16	87788864	Missense_Mutation	SNP	G	TCGA-OR-A5L2-01A-11D-A30A-10	21367929	87788864	2565889	183	9086										
RPL13	6137	hgsc.bcm.edu	37	chr16	89627671	89627671	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0851063829787234	20	0.290990223633901	1.512	3.29651162790698	0.576219512195122	0.00946526301035661	0.146711576660527	0	gccaaggcgcgccgcatcgcCccgcgccccgcgtcgggtcc	14	21	0	0	rs174035	bycluster;byfrequency;by1000genomes	TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	RPL13-90	NM_001243131	exon3	c.C141T	p.A47A	CATCGCCCCGCGC	.	20	12	0	0	C|0.846;T|0.154	0	0	0	0	0	T	89627671	C	T	89627671	2	4	42	1	0	0	0	0	0	0	0	1	13594	610	22	3		3	RPL13	16	89627671	Silent	SNP	C	TCGA-OR-A5L2-01A-11D-A30A-10	1838807	89627671	727082	184	9087										
NOS2	4843	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	26110037	26110037	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0851063829787234	20	0.290990223633901	1.512	3.29651162790698	0.576219512195122	0.00946526301035661	0.146711576660527	0	gccaggcctgcttggtggcgAagatgagctcatctcccgtc	13	13	2	2	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	NOS2-156	NM_000625	exon6	c.T563A	p.F188Y	GTGGCGAAGATGA	.	228	45	147	1	.	0	0	0	0	0	T	26110037	A	T	26110037	3	4	42	1	0	0	0	0	1	0	0	0	10572	246	9	5	2986	5	NOS2	17	26110037	Missense_Mutation	SNP	A	TCGA-OR-A5L2-01A-11D-A30A-10		26110037	55085173	185	9088										
AATF	26574	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	35310421	35310421	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0851063829787234	20	0.290990223633901	1.512	3.29651162790698	0.576219512195122	0.00946526301035661	0.146711576660527	0	cttgggagcagtgaggaggaGgaagacgaagagagtggcat	19	4	0	3	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	AATF-90	NM_012138	exon3	c.G519C	p.E173D	GGAGGAGGAAGAC	.	306	116	244	0	.	0	0	0	0	0	C	35310421	G	C	35310421	3	2	42	1	0	0	0	0	1	0	0	0	25	991	35	3	529	3	AATF	17	35310421	Missense_Mutation	SNP	G	TCGA-OR-A5L2-01A-11D-A30A-10	9200384	35310421	45884789	186	9089										
C17orf78	284099	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	35734873	35734873	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0851063829787234	20	0.290990223633901	1.512	3.29651162790698	0.576219512195122	0.00946526301035661	0.146711576660527	0	ctgggatcttcccaaaagacGtgagaagcatcagagaattg	11	8	2	3	rs184660990		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	.	NM_173625	exon2	c.G115A	p.V39M	AAAGACGTGAGAA	.	323	49	262	0	G|0.999;A|0.001	0	0	0	0	0	A	35734873	G	A	35734873	3	1	42	1	0	0	0	0	1	0	0	0	1888	1145	40	1	121	1	C17orf78	17	35734873	Missense_Mutation	SNP	G	TCGA-OR-A5L2-01A-11D-A30A-10	424452	35734873	45460337	187	9090										
KRTAP4-11	653240	broad.mit.edu	37	chr17	39274069	39274069	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0851063829787234	20	0.290990223633901	1.512	3.29651162790698	0.576219512195122	0.00946526301035661	0.146711576660527	0	agtggtgtggcaggagactcGgccacagactggacgcaggc	17	10	0	2	rs75281517		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	.	NM_033059	exon1	c.C499G	p.R167G	AGACTCGGCCACA	.	206	6	140	0	G|0.750;C|0.250	0	0	0	0	0	C	39274069	G	C	39274069	3	2	42	1	0	0	0	0	1	0	0	0	8571	1124	39	2	92	2	KRTAP4-11	17	39274069	Missense_Mutation	SNP	G	TCGA-OR-A5L2-01A-11D-A30A-10	3539196	39274069	41921141	188	9091										
KRT32	3882	broad.mit.edu	37	chr17	39619136	39619136	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0851063829787234	20	0.290990223633901	1.512	3.29651162790698	0.576219512195122	0.00946526301035661	0.146711576660527	0	tgttgatctcgccctccagcCgggcccggacgtccagcagc	12	17	1	1	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	KRT32-90	NM_002278	exon6	c.G1163A	p.R388Q	TCCAGCCGGGCCC	.	156	20	100	2	.	0	0	0	0	0	T	39619136	C	T	39619136	3	4	42	1	0	0	0	0	1	0	0	0	8489	652	23	1	191	1	KRT32	17	39619136	Missense_Mutation	SNP	C	TCGA-OR-A5L2-01A-11D-A30A-10	345067	39619136	41576074	189	9092										
KLHL10	317719	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr17	39998282	39998282	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0851063829787234	20	0.290990223633901	1.512	3.29651162790698	0.576219512195122	0.00946526301035661	0.146711576660527	0	tgctgcgagttcctcaagtcAgagctgtgcttggataattg	12	8	2	1	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	KLHL10-227	NM_152467	exon2	c.A402T	p.S134S	CAAGTCAGAGCTG	.	301	20	229	0	.	0	0	0	0	0	T	39998282	A	T	39998282	2	4	42	1	0	0	0	0	0	0	0	1	8387	175	7	5		5	KLHL10	17	39998282	Silent	SNP	A	TCGA-OR-A5L2-01A-11D-A30A-10	379146	39998282	41196928	190	9093										
TBX21	30009	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	45821703	45821703	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0851063829787234	20	0.290990223633901	1.512	3.29651162790698	0.576219512195122	0.00946526301035661	0.146711576660527	0	ccagttcattgccgtgactgCctaccagaatgccgaggtga	11	12	1	3	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	TBX21-90	NM_013351	exon4	c.C911G	p.A304G	TGACTGCCTACCA	.	211	26	177	0	.	0	0	0	0	0	G	45821703	C	G	45821703	3	3	42	1	0	0	0	0	1	0	0	0	15694	739	26	3	925	3	TBX21	17	45821703	Missense_Mutation	SNP	C	TCGA-OR-A5L2-01A-11D-A30A-10	5823421	45821703	35373507	191	9094										
WFIKKN2	124857	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	48916914	48916914	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0851063829787234	20	0.290990223633901	1.512	3.29651162790698	0.576219512195122	0.00946526301035661	0.146711576660527	0	tatgtgggaccaagagctgcGtggcggcccgctacatggac	15	11	0	1	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	WFIKKN2-93	NM_175575	exon2	c.G265A	p.V89M	AGCTGCGTGGCGG	.	270	98	186	1	.	0	0	0	0	0	A	48916914	G	A	48916914	3	1	42	1	0	0	0	0	1	0	0	0	17397	1145	40	1	271	1	WFIKKN2	17	48916914	Missense_Mutation	SNP	G	TCGA-OR-A5L2-01A-11D-A30A-10	3095211	48916914	32278296	192	9095										
TOM1L1	10040	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	52993172	52993172	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0851063829787234	20	0.290990223633901	1.512	3.29651162790698	0.576219512195122	0.00946526301035661	0.146711576660527	0	cgagtgatgtccgccatattGatggagaatactcctgggtc	12	9	0	3	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	TOM1L1-91	NM_005486	exon7	c.G669C	p.L223F	CATATTGATGGAG	.	161	32	156	0	.	0	0	0	0	0	C	52993172	G	C	52993172	3	2	42	1	0	0	0	0	1	0	0	0	16389	1281	45	3	695	3	TOM1L1	17	52993172	Missense_Mutation	SNP	G	TCGA-OR-A5L2-01A-11D-A30A-10	4076258	52993172	28202038	193	9096										
TBX4	9496	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	59560686	59560686	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0851063829787234	20	0.290990223633901	1.512	3.29651162790698	0.576219512195122	0.00946526301035661	0.146711576660527	0	agctctcccagtctcaggtcCgagagcgggggcccagcgcc	14	16	2	1	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	TBX4-227	NM_018488	exon8	c.C1447T	p.R483X	CAGGTCCGAGAGC	.	173	58	168	0	.	0	0	0	0	0	T	59560686	C	T	59560686	4	4	42	1	0	0	0	0	0	1	0	0	15697	644	23	1	1477	1	TBX4	17	59560686	Nonsense_Mutation	SNP	C	TCGA-OR-A5L2-01A-11D-A30A-10	6567514	59560686	21634524	194	9097										
PITPNC1	26207	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	65683182	65683182	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0851063829787234	20	0.290990223633901	1.512	3.29651162790698	0.576219512195122	0.00946526301035661	0.146711576660527	0	aacatcttgacctctttcagAtatgacaatggatgatgttc	7	8	3	4	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	PITPNC1-226	NM_181671	exon9	c.A683G	p.D228G	TTTCAGATATGAC	.	138	27	96	0	.	0	0	0	0	0	G	65683182	A	G	65683182	3	3	42	1	0	0	0	0	1	0	0	0	11978	347	12	4	717	4	PITPNC1	17	65683182	Missense_Mutation	SNP	A	TCGA-OR-A5L2-01A-11D-A30A-10	6122496	65683182	15512028	195	9098										
NPLOC4	55666	ucsc.edu;bcgsc.ca	37	chr17	79577266	79577266	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0851063829787234	20	0.290990223633901	1.512	3.29651162790698	0.576219512195122	0.00946526301035661	0.146711576660527	0	acgcagtgcacgcatttcccCaaagggccgtggcggcatct	12	14	1	0	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	NPLOC4-24	NM_017921	exon5	c.G405A	p.L135L	TTTCCCCAAAGGG	.	422	143	352	4	.	0	0	0	0	0	T	79577266	C	T	79577266	2	4	42	1	0	0	0	0	0	0	0	1	10615	593	21	3		3	NPLOC4	17	79577266	Silent	SNP	C	TCGA-OR-A5L2-01A-11D-A30A-10	13894084	79577266	1617944	196	9099										
ARID3A	1820	hgsc.bcm.edu	37	chr19	929753	929753	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0851063829787234	20	0.290990223633901	1.512	3.29651162790698	0.576219512195122	0.00946526301035661	0.146711576660527	0	gctgcgggcctgggacacccAgccagccccggcggctctga	15	17	1	1	rs1799595		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	ARID3A-90	NM_005224	exon2	c.A225G	p.P75P	ACACCCAGCCAGC	.	11	11	0	0	A|0.114;G|0.886	0	0	0	0	0	G	929753	A	G	929753	2	3	42	1	0	0	0	0	0	0	0	1	916	175	7	4		4	ARID3A	19	929753	Silent	SNP	A	TCGA-OR-A5L2-01A-11D-A30A-10		929753	58199230	197	9100										
KLF16	83855	hgsc.bcm.edu	37	chr19	1854557	1854557	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0851063829787234	20	0.290990223633901	1.512	3.29651162790698	0.576219512195122	0.00946526301035661	0.146711576660527	0	ggggaggtactgcgggcaccAgggcgccggagcaggtccgg	21	11	0	0	rs3746045	byfrequency	TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	KLF16-90	NM_031918	exon2	c.T660C	p.P220P	GGCACCAGGGCGC	.	28	13	2	0	A|0.591;G|0.409	0	0	0	0	0	G	1854557	A	G	1854557	2	3	42	1	0	0	0	0	0	0	0	1	8365	175	7	4		4	KLF16	19	1854557	Silent	SNP	A	TCGA-OR-A5L2-01A-11D-A30A-10	924804	1854557	57274426	198	9101										
FAM108A1	81926	broad.mit.edu	37	chr19	1881527	1881527	+	Frame_Shift_Del	DEL	G	G	-													0.0851063829787234	20	0.290990223633901	1.512	3.29651162790698	0.576219512195122	0.00946526301035661	0.146711576660527	0	ccggggcagggcgggcagcaGaagaggcagcagagctcact					novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	FAM108A1-90	NM_031213	exon2	c.39delC	p.F13fs	GCAGCAGAAGAGG	.	69	7	16	0	.	0	0	0	0	0	-	1881527	G	-	1881527	7	5	42	1	0	1	0	1	0	0	0	0	5407	933	33	0	1066	0	FAM108A1	19	1881527	Frame_Shift_Del	DEL	G	TCGA-OR-A5L2-01A-11D-A30A-10	26970	1881527	57247456	199	9102	104	2								
FAM108A1	81926	broad.mit.edu	37	chr19	1881529	1881530	+	Frame_Shift_Del	DEL	AG	AG	-													0.0851063829787234	20	0.290990223633901	1.512	3.29651162790698	0.576219512195122	0.00946526301035661	0.146711576660527	0	ggggcagggcgggcagcagaAgaggcagcagagctcactca					novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	FAM108A1-90	NM_031213	exon2	c.36_37del	p.12_13del	AGCAGAAGAGGCA	.	68	7	16	0	.	0	0	0	0	0	-	1881530	AG	-	1881529	7	5	42	1	0	1	0	1	0	0	0	0	5407	72	3	0	1068	0	FAM108A1	19	1881529	Frame_Shift_Del	DEL	AG	TCGA-OR-A5L2-01A-11D-A30A-10	2	1881529	57247454	200	9103	104	2								
ADAT3	113179	hgsc.bcm.edu	37	chr19	1912251	1912251	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0851063829787234	20	0.290990223633901	1.512	3.29651162790698	0.576219512195122	0.00946526301035661	0.146711576660527	0	acgccgcgcccgtcctggacAagcgccagacctcacgcctc	10	20	1	1	rs150715312	byfrequency	TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	ADAT3-154	NM_138422	exon2	c.A205G	p.K69E	CTGGACAAGCGCC	.	64	18	10	0	A|0.993;G|0.007	0	0	0	0	0	G	1912251	A	G	1912251	3	3	42	1	0	0	0	0	1	0	0	0	286	131	5	4	159	4	ADAT3	19	1912251	Missense_Mutation	SNP	A	TCGA-OR-A5L2-01A-11D-A30A-10	30722	1912251	57216732	201	9104										
DOHH	83475	broad.mit.edu	37	chr19	3496745	3496745	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0851063829787234	20	0.290990223633901	1.512	3.29651162790698	0.576219512195122	0.00946526301035661	0.146711576660527	0	tgaacagcgcccggaagcggGcctgcaggggctgcttgggg	19	11	0	1	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	DOHH-90	NM_001145165	exon2	c.C68A	p.A23D	AAGCGGGCCTGCA	.	147	12	24	1	.	0	0	0	0	0	T	3496745	G	T	3496745	3	4	42	1	0	0	0	0	1	0	0	0	4706	1203	42	3	856	3	DOHH	19	3496745	Missense_Mutation	SNP	G	TCGA-OR-A5L2-01A-11D-A30A-10	1584494	3496745	55632238	202	9105										
C19orf10	56005	hgsc.bcm.edu	37	chr19	4670313	4670313	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0851063829787234	20	0.290990223633901	1.512	3.29651162790698	0.576219512195122	0.00946526301035661	0.146711576660527	0	cgcggcccacaagctcgcgcCgacgccgttccaccctccgc	10	22	0	0	rs2270090	byfrequency	TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	C19orf10-90	NM_019107	exon1	c.G34C	p.G12R	TCGCGCCGACGCC	.	9	7	1	0	C|0.752;G|0.248	0	0	0	0	0	G	4670313	C	G	4670313	3	3	42	1	0	0	0	0	1	0	0	0	1914	652	23	2	511	2	C19orf10	19	4670313	Missense_Mutation	SNP	C	TCGA-OR-A5L2-01A-11D-A30A-10	1173568	4670313	54458670	203	9106										
TNFSF9	8744	broad.mit.edu	37	chr19	6534816	6534816	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0851063829787234	20	0.290990223633901	1.512	3.29651162790698	0.576219512195122	0.00946526301035661	0.146711576660527	0	tcacttgcgctgcacctgcaGccactgcgctctgctgctgg	11	16	2	0	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	TNFSF9-227	NM_003811	exon3	c.G504T	p.Q168H	CCTGCAGCCACTG	.	82	8	23	1	.	0	0	0	0	0	T	6534816	G	T	6534816	3	4	42	1	0	0	0	0	1	0	0	0	16349	962	34	3	514	3	TNFSF9	19	6534816	Missense_Mutation	SNP	G	TCGA-OR-A5L2-01A-11D-A30A-10	1864503	6534816	52594167	204	9107										
CD209	30835	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	7808071	7808071	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0851063829787234	20	0.290990223633901	1.512	3.29651162790698	0.576219512195122	0.00946526301035661	0.146711576660527	0	gccattgccactaaattccgCgcagtcttcctccccaacgt	6	17	1	0	rs200282091		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	CD209-91	NM_021155	exon7	c.G1069A	p.A357T	ATTCCGCGCAGTC	.	147	44	130	0	C|0.999;T|0.000	0	0	0	0	0	T	7808071	C	T	7808071	3	4	42	1	0	0	0	0	1	0	0	0	2990	768	27	1	149	1	CD209	19	7808071	Missense_Mutation	SNP	C	TCGA-OR-A5L2-01A-11D-A30A-10	1273255	7808071	51320912	205	9108										
HNRNPM	4670	broad.mit.edu	37	chr19	8550869	8550869	+	Frame_Shift_Del	DEL	C	C	-													0.0851063829787234	20	0.290990223633901	1.512	3.29651162790698	0.576219512195122	0.00946526301035661	0.146711576660527	0	tctggcgtggagcgcatgggCcctgccatcgagcgcatggg					novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	HNRNPM-68	NM_005968	exon14	c.1557delC	p.G519fs	CATGGGCCCTGCC	.	168	11	39	0	.	0	0	0	0	0	-	8550869	C	-	8550869	7	5	42	1	0	1	0	1	0	0	0	0	7292	726	26	0	1611	0	HNRNPM	19	8550869	Frame_Shift_Del	DEL	C	TCGA-OR-A5L2-01A-11D-A30A-10	742798	8550869	50578114	206	9109	105	6								
HNRNPM	4670	hgsc.bcm.edu	37	chr19	8550870	8550870	+	Missense_Mutation	SNP	C	C	T													0.0851063829787234	20	0.290990223633901	1.512	3.29651162790698	0.576219512195122	0.00946526301035661	0.146711576660527	0	ctggcgtggagcgcatgggcCctgccatcgagcgcatgggc					novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	HNRNPM-68	NM_005968	exon14	c.C1558T	p.P520S	ATGGGCCCTGCCA	.	168	23	39	0	.	0	0	0	0	0	T	8550870	C	T	8550870	3	4	42	1	0	0	0	0	1	0	0	0	7292	623	22	3	1612	3	HNRNPM	19	8550870	Missense_Mutation	SNP	C	TCGA-OR-A5L2-01A-11D-A30A-10	1	8550870	50578113	207	9110	105	6								
HNRNPM	4670	broad.mit.edu	37	chr19	8550873	8550874	+	Frame_Shift_Ins	INS	-	-	A													0.0851063829787234	20	0.290990223633901	1.512	3.29651162790698	0.576219512195122	0.00946526301035661	0.146711576660527	0	cgtggagcgcatgggccctgINSccatcgagcgcatgggcctg					novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	HNRNPM-68	NM_005968	exon14	c.1561_1562insA	p.A521fs	GGCCCTGCCATCG	.	167	10	39	0	.	0	0	0	0	0	A	8550874	-	A	8550873	7	5	42	1	0	1	1	0	0	0	0	0	7292	1319	46	0	1615	0	HNRNPM	19	8550873	Frame_Shift_Ins	INS	-	TCGA-OR-A5L2-01A-11D-A30A-10	3	8550873	50578110	208	9111	105	6								
HNRNPM	4670	hgsc.bcm.edu	37	chr19	8550874	8550874	+	Missense_Mutation	SNP	C	C	G													0.0851063829787234	20	0.290990223633901	1.512	3.29651162790698	0.576219512195122	0.00946526301035661	0.146711576660527	0	cgtggagcgcatgggccctgCcatcgagcgcatgggcctga					novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	HNRNPM-68	NM_005968	exon14	c.C1562G	p.A521G	GCCCTGCCATCGA	.	167	38	39	0	.	0	0	0	0	0	G	8550874	C	G	8550874	3	3	42	1	0	0	0	0	1	0	0	0	7292	739	26	3	1616	3	HNRNPM	19	8550874	Missense_Mutation	SNP	C	TCGA-OR-A5L2-01A-11D-A30A-10	1	8550874	50578109	209	9112	105	6								
HNRNPM	4670	hgsc.bcm.edu	37	chr19	8550876	8550876	+	Missense_Mutation	SNP	A	A	G													0.0851063829787234	20	0.290990223633901	1.512	3.29651162790698	0.576219512195122	0.00946526301035661	0.146711576660527	0	tggagcgcatgggccctgccAtcgagcgcatgggcctgagc					novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	HNRNPM-68	NM_005968	exon14	c.A1564G	p.I522V	CCTGCCATCGAGC	.	170	24	40	0	.	0	0	0	0	0	G	8550876	A	G	8550876	3	3	42	1	0	0	0	0	1	0	0	0	7292	217	8	4	1618	4	HNRNPM	19	8550876	Missense_Mutation	SNP	A	TCGA-OR-A5L2-01A-11D-A30A-10	2	8550876	50578107	210	9113	105	6								
HNRNPM	4670	hgsc.bcm.edu	37	chr19	8550878	8550878	+	Missense_Mutation	SNP	C	C	G													0.0851063829787234	20	0.290990223633901	1.512	3.29651162790698	0.576219512195122	0.00946526301035661	0.146711576660527	0	gagcgcatgggccctgccatCgagcgcatgggcctgagcat					novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	HNRNPM-68	NM_005968	exon14	c.C1566G	p.I522M	TGCCATCGAGCGC	.	169	40	40	0	.	0	0	0	0	0	G	8550878	C	G	8550878	3	3	42	1	0	0	0	0	1	0	0	0	7292	874	31	2	1620	2	HNRNPM	19	8550878	Missense_Mutation	SNP	C	TCGA-OR-A5L2-01A-11D-A30A-10	2	8550878	50578105	211	9114	105	6								
LPAR2	9170	broad.mit.edu;bcgsc.ca	37	chr19	19737970	19737970	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0851063829787234	20	0.290990223633901	1.512	3.29651162790698	0.576219512195122	0.00946526301035661	0.146711576660527	0	cagcagcaccagcacgctgaCggtcagccccagtgccacca	10	18	1	1	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	LPAR2-501	NM_004720	exon2	c.G124A	p.V42I	CGCTGACGGTCAG	.	214	15	134	2	.	0	0	0	0	0	T	19737970	C	T	19737970	3	4	42	1	0	0	0	0	1	0	0	0	8932	536	19	1	939	1	LPAR2	19	19737970	Missense_Mutation	SNP	C	TCGA-OR-A5L2-01A-11D-A30A-10	11187092	19737970	39391013	212	9115										
LSM14A	26065	broad.mit.edu	37	chr19	34710315	34710315	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0851063829787234	20	0.290990223633901	1.512	3.29651162790698	0.576219512195122	0.00946526301035661	0.146711576660527	0	gctccaggtgctccttcagcTccaaggagagggcgtggggg	17	11	1	1	rs201741862		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	LSM14A-91	NM_001114093	exon7	c.T801G	p.A267A	TTCAGCTCCAAGG	.	67	4	60	1	T|0.999;G|0.001	0	0	0	0	0	G	34710315	T	G	34710315	2	3	42	1	0	0	0	0	0	0	0	1	9081	1538	54	5		5	LSM14A	19	34710315	Silent	SNP	T	TCGA-OR-A5L2-01A-11D-A30A-10	14972345	34710315	24418668	213	9116										
PRR19	284338	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr19	42814036	42814036	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0851063829787234	20	0.290990223633901	1.512	3.29651162790698	0.576219512195122	0.00946526301035661	0.146711576660527	0	accctggtgccaggcagcccCacactccccgccaagccctc	8	22	0	0	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	PRR19-68	NM_199285	exon2	c.C300T	p.P100P	CAGCCCCACACTC	.	38	5	52	0	.	0	0	0	0	0	T	42814036	C	T	42814036	2	4	42	1	0	0	0	0	0	0	0	1	12623	581	21	3		3	PRR19	19	42814036	Silent	SNP	C	TCGA-OR-A5L2-01A-11D-A30A-10	8103721	42814036	16314947	214	9117										
ZNF285	26974	bcgsc.ca	37	chr19	44891010	44891010	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0851063829787234	20	0.290990223633901	1.512	3.29651162790698	0.576219512195122	0.00946526301035661	0.146711576660527	0	tgtgaagaacagagctatacGcaaaatcctttccacacaca	6	11	0	3	rs150792548	byfrequency	TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	ZNF285-94	NM_152354	exon4	c.C1397G	p.A466G	CTATACGCAAAAT	.	178	15	147	3	A|0.000;C|0.002;G|0.998	0	0	0	0	0	C	44891010	G	C	44891010	3	2	42	1	0	0	0	0	1	0	0	0	17859	1087	38	2	379	2	ZNF285	19	44891010	Missense_Mutation	SNP	G	TCGA-OR-A5L2-01A-11D-A30A-10	2076974	44891010	14237973	215	9118										
PTGIR	5739	hgsc.bcm.edu	37	chr19	47127324	47127324	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0851063829787234	20	0.290990223633901	1.512	3.29651162790698	0.576219512195122	0.00946526301035661	0.146711576660527	0	tcggtggccgccagtccggtCaccagcaccgcgaaggccga	14	16	1	0	rs2229128	byfrequency	TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	PTGIR-522	NM_000960	exon2	c.G159C	p.V53V	TCCGGTCACCAGC	.	16	16	0	0	C|0.254;G|0.746	0	0	0	0	0	G	47127324	C	G	47127324	2	3	42	1	0	0	0	0	0	0	0	1	12784	813	29	3		3	PTGIR	19	47127324	Silent	SNP	C	TCGA-OR-A5L2-01A-11D-A30A-10	2236314	47127324	12001659	216	9119										
SLC8A2	6543	hgsc.bcm.edu	37	chr19	47951134	47951134	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0851063829787234	20	0.290990223633901	1.512	3.29651162790698	0.576219512195122	0.00946526301035661	0.146711576660527	0	tgcacgccgccgccgcgcgcCgtgccgtccaccgtgcggta	14	19	0	0	rs61748880	byfrequency	TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	SLC8A2-94	NM_015063	exon4	c.G1695A	p.T565T	GCGCGCCGTGCCG	.	7	7	0	0	C|0.964;T|0.036	0	0	0	0	0	T	47951134	C	T	47951134	2	4	42	1	0	0	0	0	0	0	0	1	14742	639	23	1		1	SLC8A2	19	47951134	Silent	SNP	C	TCGA-OR-A5L2-01A-11D-A30A-10	823810	47951134	11177849	217	9120										
FAM83E	54854	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr19	49104471	49104471	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0851063829787234	20	0.290990223633901	1.512	3.29651162790698	0.576219512195122	0.00946526301035661	0.146711576660527	0	ccaccgaaccgccttcgggcTggggacagatagcggaggcg	16	13	0	1	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	FAM83E-91	NM_017708	exon5	c.A1332G	p.P444P	TCGGGCTGGGGAC	.	71	6	54	0	.	0	0	0	0	0	C	49104471	T	C	49104471	2	2	42	1	0	0	0	0	0	0	0	1	5656	1567	55	4		4	FAM83E	19	49104471	Silent	SNP	T	TCGA-OR-A5L2-01A-11D-A30A-10	1153337	49104471	10024512	218	9121										
KLK11	11012	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	51527336	51527336	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0851063829787234	20	0.290990223633901	1.512	3.29651162790698	0.576219512195122	0.00946526301035661	0.146711576660527	0	tgctgccccagccggaaatgAggcagctggtgccagcagtg	15	12	0	1	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	KLK11-650	NM_144947	exon4	c.T524C	p.L175P	GAAATGAGGCAGC	.	111	14	105	1	.	0	0	0	0	0	G	51527336	A	G	51527336	3	3	42	1	0	0	0	0	1	0	0	0	8420	304	11	4	336	4	KLK11	19	51527336	Missense_Mutation	SNP	A	TCGA-OR-A5L2-01A-11D-A30A-10	2422865	51527336	7601647	219	9122										
FPR1	2357	broad.mit.edu	37	chr19	52249450	52249450	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0851063829787234	20	0.290990223633901	1.512	3.29651162790698	0.576219512195122	0.00946526301035661	0.146711576660527	0	tgcaataactcacggattctGactgtggctataagggccac	10	10	2	1	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	FPR1-524	NM_001193306	exon3	c.C798G	p.V266V	GATTCTGACTGTG	.	129	3	111	0	.	0	0	0	0	0	C	52249450	G	C	52249450	2	2	42	1	0	0	0	0	0	0	0	1	6057	1277	45	3		3	FPR1	19	52249450	Silent	SNP	G	TCGA-OR-A5L2-01A-11D-A30A-10	722114	52249450	6879533	220	9123										
NLRP4	147945	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	56369429	56369429	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0851063829787234	20	0.290990223633901	1.512	3.29651162790698	0.576219512195122	0.00946526301035661	0.146711576660527	0	cagagatcgtgtctcaaccgGagagactcttgttcgtcatc	10	11	3	2	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	NLRP4-216	NM_134444	exon3	c.G670T	p.E224X	CAACCGGAGAGAC	.	102	14	111	0	.	0	0	0	0	0	T	56369429	G	T	56369429	4	4	42	1	0	0	0	0	0	1	0	0	10508	1175	41	3	676	3	NLRP4	19	56369429	Nonsense_Mutation	SNP	G	TCGA-OR-A5L2-01A-11D-A30A-10	4119979	56369429	2759554	221	9124										
ZNF835	90485	broad.mit.edu	37	chr19	57176051	57176051	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0851063829787234	20	0.290990223633901	1.512	3.29651162790698	0.576219512195122	0.00946526301035661	0.146711576660527	0	gagccctggctgaaggccttGccgcactcgtggcaggcgta	15	13	0	1	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	ZNF835-72	NM_001005850	exon2	c.C516A	p.G172G	GGCCTTGCCGCAC	.	68	5	46	0	.	0	0	0	0	0	T	57176051	G	T	57176051	2	4	42	1	0	0	0	0	0	0	0	1	18223	1306	46	3		3	ZNF835	19	57176051	Silent	SNP	G	TCGA-OR-A5L2-01A-11D-A30A-10	806622	57176051	1952932	222	9125										
PEG3	5178	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr19	57327088	57327088	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0851063829787234	20	0.290990223633901	1.512	3.29651162790698	0.576219512195122	0.00946526301035661	0.146711576660527	0	accagatccctctccaggaaCacttttctgaggtttggcac	8	13	2	2	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	PEG3-164	NM_001146184	exon9	c.G2722T	p.V908F	CAGGAACACTTTT	.	69	5	48	0	.	0	0	0	0	0	A	57327088	C	A	57327088	3	1	42	1	0	0	0	0	1	0	0	0	11749	478	17	3	2048	3	PEG3	19	57327088	Missense_Mutation	SNP	C	TCGA-OR-A5L2-01A-11D-A30A-10	151037	57327088	1801895	223	9126										
CDS2	8760	ucsc.edu;bcgsc.ca	37	chr20	5170814	5170814	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0851063829787234	20	0.290990223633901	1.512	3.29651162790698	0.576219512195122	0.00946526301035661	0.146711576660527	0	ccagatcagcagctccacatCttcaacacgctgcggtctca	7	16	4	1	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	CDS2-226	NM_003818	exon13	c.C1272T	p.I424I	CCACATCTTCAAC	.	331	57	304	3	.	0	0	0	0	0	T	5170814	C	T	5170814	2	4	42	1	0	0	0	0	0	0	0	1	3184	903	32	3		3	CDS2	20	5170814	Silent	SNP	C	TCGA-OR-A5L2-01A-11D-A30A-10		5170814	57854706	224	9127										
INSM1	3642	hgsc.bcm.edu	37	chr20	20350152	20350152	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0851063829787234	20	0.290990223633901	1.512	3.29651162790698	0.576219512195122	0.00946526301035661	0.146711576660527	0	actggccttgtaccccgggcCcgacgagaaggcgccccagg	14	16	0	1	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	INSM1-91	NM_002196	exon1	c.C1241T	p.P414L	CCGGGCCCGACGA	.	6	4	0	0	.	0	0	0	0	0	T	20350152	C	T	20350152	3	4	42	1	0	0	0	0	1	0	0	0	7792	623	22	3	1243	3	INSM1	20	20350152	Missense_Mutation	SNP	C	TCGA-OR-A5L2-01A-11D-A30A-10	15179338	20350152	42675368	225	9128										
C20orf112	140688	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr20	31115669	31115669	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0851063829787234	20	0.290990223633901	1.512	3.29651162790698	0.576219512195122	0.00946526301035661	0.146711576660527	0	aagaaatcttccaccacagcGacccgcttcagagagatgcc	8	14	2	3	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	C20orf112-514	NM_001256798	exon2	c.C369T	p.V123V	CACAGCGACCCGC	.	104	27	83	0	.	0	0	0	0	0	A	31115669	G	A	31115669	2	1	42	1	0	0	0	0	0	0	0	1	2087	1073	37	1		1	C20orf112	20	31115669	Silent	SNP	G	TCGA-OR-A5L2-01A-11D-A30A-10	10765517	31115669	31909851	226	9129										
WFDC8	90199	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr20	44184408	44184408	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0851063829787234	20	0.290990223633901	1.512	3.29651162790698	0.576219512195122	0.00946526301035661	0.146711576660527	0	tggcattcccttcgcagcccCtgtatttgaagggtgtgcag	12	11	0	1	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	WFDC8-90	NM_181510	exon4	c.G377A	p.R126K	CAGCCCCTGTATT	.	94	11	77	0	.	0	0	0	0	0	T	44184408	C	T	44184408	3	4	42	1	0	0	0	0	1	0	0	0	17394	681	24	3	360	3	WFDC8	20	44184408	Missense_Mutation	SNP	C	TCGA-OR-A5L2-01A-11D-A30A-10	13068739	44184408	18841112	227	9130										
ARFRP1	10139	bcgsc.ca	37	chr20	62333492	62333492	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0851063829787234	20	0.290990223633901	1.512	3.29651162790698	0.576219512195122	0.00946526301035661	0.146711576660527	0	gccaggccgcactcaccaaaCgcctgcttggactcagccag	10	17	2	0	rs112359854		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	ARFRP1-291	NM_001134758	exon5	c.G342A	p.A114A	ACCAAACGCCTGC	.	63	22	38	1	.	0	0	0	0	0	T	62333492	C	T	62333492	2	4	42	1	0	0	0	0	0	0	0	1	856	523	19	1		1	ARFRP1	20	62333492	Silent	SNP	C	TCGA-OR-A5L2-01A-11D-A30A-10	18149084	62333492	692028	228	9131										
SON	6651	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr21	34924819	34924819	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0851063829787234	20	0.290990223633901	1.512	3.29651162790698	0.576219512195122	0.00946526301035661	0.146711576660527	0	gctgaccggtctatgatgtcGtcatactctgctgctgaccg	11	12	3	3	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	SON-97	NM_032195	exon3	c.G3282A	p.S1094S	GATGTCGTCATAC	.	324	72	263	1	.	0	0	0	0	0	A	34924819	G	A	34924819	2	1	42	1	0	0	0	0	0	0	0	1	14961	1132	40	1		1	SON	21	34924819	Silent	SNP	G	TCGA-OR-A5L2-01A-11D-A30A-10		34924819	13205076	229	9132										
KRTAP10-10	353333	ucsc.edu	37	chr21	46057625	46057625	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0851063829787234	20	0.290990223633901	1.512	3.29651162790698	0.576219512195122	0.00946526301035661	0.146711576660527	0	cagcaggcctgctgtgtgccTgtctgctgtgtgcccgtctg	14	13	2	0	rs55677560	bycluster	TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	KRTAP10-10-90	NM_181688	exon1	c.T291C	p.P97P	TGTGCCTGTCTGC	.	141	13	120	0	C|1.000;|0.000	0	0	0	0	0	C	46057625	T	C	46057625	2	2	42	1	0	0	0	0	0	0	0	1	8527	1567	55	4		4	KRTAP10-10	21	46057625	Silent	SNP	T	TCGA-OR-A5L2-01A-11D-A30A-10	11132806	46057625	2072270	230	9133										
PRODH	5625	hgsc.bcm.edu	37	chr22	18923745	18923745	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0851063829787234	20	0.290990223633901	1.512	3.29651162790698	0.576219512195122	0.00946526301035661	0.146711576660527	0	aggccggcgccgtggacagcGggacgaagcggggaatgcag	20	10	0	0	rs2008720	byfrequency	TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	PRODH-289	NM_016335	exon2	c.C56A	p.P19Q	GACAGCGGGACGA	.	5	5	0	0	G|0.457;T|0.543	0	0	0	0	0	T	18923745	G	T	18923745	3	4	42	1	0	0	0	0	1	0	0	0	12580	1116	39	2	1802	2	PRODH	22	18923745	Missense_Mutation	SNP	G	TCGA-OR-A5L2-01A-11D-A30A-10		18923745	32380821	231	9134										
SCARF2	91179	hgsc.bcm.edu	37	chr22	20780091	20780091	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0851063829787234	20	0.290990223633901	1.512	3.29651162790698	0.576219512195122	0.00946526301035661	0.146711576660527	0	gtcgcctcctcgggcagcccCggggggcgcggcgttgggtc	19	15	0	0	rs77189880	bycluster;byfrequency;by1000genomes	TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	SCARF2-341	NM_153334	exon11	c.G2187C	p.P729P	CAGCCCCGGGGGG	.	6	6	0	0	C|0.138;G|0.862	0	0	0	0	0	G	20780091	C	G	20780091	2	3	42	1	0	0	0	0	0	0	0	1	13919	639	23	2		2	SCARF2	22	20780091	Silent	SNP	C	TCGA-OR-A5L2-01A-11D-A30A-10	1856346	20780091	30524475	232	9135										
CHEK2	11200	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr22	29121006	29121006	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0851063829787234	20	0.290990223633901	1.512	3.29651162790698	0.576219512195122	0.00946526301035661	0.146711576660527	0	gtgcaatttcagaattgttaTtcaaaggacggcgttttcct	9	7	2	1	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	CHEK2-1515	NM_001005735	exon5	c.A680T	p.N227I	TTGTTATTCAAAG	.	222	15	167	0	.	0	0	0	0	0	A	29121006	T	A	29121006	3	1	42	1	0	0	0	0	1	0	0	0	3341	1493	52	5	1128	5	CHEK2	22	29121006	Missense_Mutation	SNP	T	TCGA-OR-A5L2-01A-11D-A30A-10	8340915	29121006	22183560	233	9136										
C22orf31	25770	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr22	29454817	29454817	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0851063829787234	20	0.290990223633901	1.512	3.29651162790698	0.576219512195122	0.00946526301035661	0.146711576660527	0	ctgccagggaaccggtccctCtgagcaccttcagagatggc	12	14	2	2	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	C22orf31-90	NM_015370	exon3	c.G786C	p.Q262H	GTCCCTCTGAGCA	.	112	17	87	0	.	0	0	0	0	0	G	29454817	C	G	29454817	3	3	42	1	0	0	0	0	1	0	0	0	2149	912	32	3	90	3	C22orf31	22	29454817	Missense_Mutation	SNP	C	TCGA-OR-A5L2-01A-11D-A30A-10	333811	29454817	21849749	234	9137										
RHBDD3	25807	broad.mit.edu	37	chr22	29661518	29661519	+	Frame_Shift_Ins	INS	-	-	C													0.0851063829787234	20	0.290990223633901	1.512	3.29651162790698	0.576219512195122	0.00946526301035661	0.146711576660527	0	caggaccaggccggggccggINScccccaccagccacagggtg					rs150836859	by1000genomes	TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	RHBDD3-91	NM_012265	exon3	c.98_99insG	p.A33fs	GGGCCGGCCCCCA	.	290	11	177	0	.	0	0	0	0	0	C	29661519	-	C	29661518	7	5	42	1	0	1	1	0	0	0	0	0	13353	1203	42	0	1082	0	RHBDD3	22	29661518	Frame_Shift_Ins	INS	-	TCGA-OR-A5L2-01A-11D-A30A-10	206701	29661518	21643048	235	9138										
CSF2RB	1439	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr22	37333549	37333549	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0851063829787234	20	0.290990223633901	1.512	3.29651162790698	0.576219512195122	0.00946526301035661	0.146711576660527	0	atctacccacagagcagcccCccagcccccagccaggcccg	8	22	1	1	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	CSF2RB-93	NM_000395	exon14	c.C1699G	p.P567A	CAGCCCCCCAGCC	.	65	7	47	0	.	0	0	0	0	0	G	37333549	C	G	37333549	3	3	42	1	0	0	0	0	1	0	0	0	3941	623	22	3	1749	3	CSF2RB	22	37333549	Missense_Mutation	SNP	C	TCGA-OR-A5L2-01A-11D-A30A-10	7672031	37333549	13971017	236	9139										
CACNA1I	8911	broad.mit.edu	37	chr22	40066230	40066230	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0851063829787234	20	0.290990223633901	1.512	3.29651162790698	0.576219512195122	0.00946526301035661	0.146711576660527	0	gcggcgcctggagaagaagcGccggagtgagtgggtgcctg	20	9	0	3	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	CACNA1I-135	NM_021096	exon25	c.G4382A	p.R1461H	AGAAGCGCCGGAG	.	66	15	49	1	.	0	0	0	0	0	A	40066230	G	A	40066230	3	1	42	1	0	0	0	0	1	0	0	0	2552	1087	38	1	4480	1	CACNA1I	22	40066230	Missense_Mutation	SNP	G	TCGA-OR-A5L2-01A-11D-A30A-10	2732681	40066230	11238336	237	9140										
ENTHD1	150350	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr22	40140106	40140106	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0851063829787234	20	0.290990223633901	1.512	3.29651162790698	0.576219512195122	0.00946526301035661	0.146711576660527	0	agaagcaaaggagtgatgcaGcttggctgtcttatcttcat	11	7	3	2	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	ENTHD1-93	NM_152512	exon7	c.C1402T	p.L468L	GATGCAGCTTGGC	.	155	25	129	0	.	0	0	0	0	0	A	40140106	G	A	40140106	2	1	42	1	0	0	0	0	0	0	0	1	5150	962	34	3		3	ENTHD1	22	40140106	Silent	SNP	G	TCGA-OR-A5L2-01A-11D-A30A-10	73876	40140106	11164460	238	9141										
RRP7A	27341	bcgsc.ca	37	chr22	42912029	42912029	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0851063829787234	20	0.290990223633901	1.512	3.29651162790698	0.576219512195122	0.00946526301035661	0.146711576660527	0	cggctcaccggaactggcttGggatgaaaaaacttcgacct	11	11	1	1	rs3201001	byfrequency	TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	RRP7A-91	NM_015703	exon3	c.C330A	p.P110P	TGGCTTGGGATGA	.	172	8	122	1	G|0.748;T|0.252	0	0	0	0	0	T	42912029	G	T	42912029	2	4	42	1	0	0	0	0	0	0	0	1	13724	1335	47	3		3	RRP7A	22	42912029	Silent	SNP	G	TCGA-OR-A5L2-01A-11D-A30A-10	2771923	42912029	8392537	239	9142										
MAGEB4	4115	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	30261199	30261199	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0851063829787234	20	0.290990223633901	1.512	3.29651162790698	0.576219512195122	0.00946526301035661	0.146711576660527	0	agatgaagaagagagagctgGagcccggcccagagttgcag	16	8	0	6	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	MAGEB4-131	NM_002367	exon1	c.G947A	p.G316E	GAGCTGGAGCCCG	.	60	19	63	0	.	0	0	0	0	0	A	30261199	G	A	30261199	3	1	42	1	0	0	0	0	1	0	0	0	9206	1174	41	3	949	3	MAGEB4	23	30261199	Missense_Mutation	SNP	G	TCGA-OR-A5L2-01A-11D-A30A-10		30261199	125009361	240	9143										
FAM47A	158724	bcgsc.ca	37	chrX	34148842	34148842	+	Silent	SNP	G	G	A													0.0851063829787234	20	0.290990223633901	1.512	3.29651162790698	0.576219512195122	0.00946526301035661	0.146711576660527	0	cgagtcttgggaggctccgaGcggagactggacgtccgacg					novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	FAM47A-134	NM_203408	exon1	c.C1554T	p.R518R	CTCCGAGCGGAGA	.	103	10	101	1	.	0	0	0	0	0	A	34148842	G	A	34148842	2	1	42	1	0	0	0	0	0	0	0	1	5588	958	34	3		3	FAM47A	23	34148842	Silent	SNP	G	TCGA-OR-A5L2-01A-11D-A30A-10	3887643	34148842	121121718	241	9144	106	2								
FAM47A	158724	bcgsc.ca	37	chrX	34148844	34148844	+	Missense_Mutation	SNP	G	G	C													0.0851063829787234	20	0.290990223633901	1.512	3.29651162790698	0.576219512195122	0.00946526301035661	0.146711576660527	0	agtcttgggaggctccgagcGgagactggacgtccgacgag					rs17855514		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	FAM47A-134	NM_203408	exon1	c.C1552G	p.R518G	CCGAGCGGAGACT	.	107	13	101	3	.	0	0	0	0	0	C	34148844	G	C	34148844	3	2	42	1	0	0	0	0	1	0	0	0	5588	1116	39	2	827	2	FAM47A	23	34148844	Missense_Mutation	SNP	G	TCGA-OR-A5L2-01A-11D-A30A-10	2	34148844	121121716	242	9145	106	2								
PIN4	5303	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	71417263	71417263	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0851063829787234	20	0.290990223633901	1.512	3.29651162790698	0.576219512195122	0.00946526301035661	0.146711576660527	0	ggtccatggtgggaccatttCaagaagcagcatttgccttg	12	9	1	1	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	PIN4-130	NM_006223	exon4	c.C358G	p.Q120E	CCATTTCAAGAAG	.	442	86	350	0	.	0	0	0	0	0	G	71417263	C	G	71417263	3	3	42	1	0	0	0	0	1	0	0	0	11960	827	29	3	372	3	PIN4	23	71417263	Missense_Mutation	SNP	C	TCGA-OR-A5L2-01A-11D-A30A-10	37268419	71417263	83853297	243	9146										
MAGEE1	57692	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chrX	75648451	75648451	+	Nonsense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0851063829787234	20	0.290990223633901	1.512	3.29651162790698	0.576219512195122	0.00946526301035661	0.146711576660527	0	ccccgctgatgtgccaggctCagacgtcccccagggtccca	11	18	1	2	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	MAGEE1-262	NM_020932	exon1	c.C128G	p.S43X	CAGGCTCAGACGT	.	336	19	247	0	.	0	0	0	0	0	G	75648451	C	G	75648451	4	3	42	1	0	0	0	0	0	1	0	0	9213	838	29	3	130	3	MAGEE1	23	75648451	Nonsense_Mutation	SNP	C	TCGA-OR-A5L2-01A-11D-A30A-10	4231188	75648451	79622109	244	9147										
SPANXN3	139067	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	142605206	142605206	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0851063829787234	20	0.290990223633901	1.512	3.29651162790698	0.576219512195122	0.00946526301035661	0.146711576660527	0	tctccccattggtgctggaaGttggctgttccatgattctg	11	10	2	1	novel		TCGA-OR-A5L2-01A-11D-A30A-10	TCGA-OR-A5L2-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99bd79e-aa33-4896-8d10-2517c793f439	48e26b1d-b84d-432b-940b-9907c81ddf5b	.	SPANXN3-132	NM_001009609	exon1	c.C14A	p.T5N	CTGGAAGTTGGCT	.	95	23	111	2	.	0	0	0	0	0	T	142605206	G	T	142605206	3	4	42	1	0	0	0	0	1	0	0	0	15029	1029	36	3	419	3	SPANXN3	23	142605206	Missense_Mutation	SNP	G	TCGA-OR-A5L2-01A-11D-A30A-10	66956755	142605206	12665354	245	9148										
UBR4	23352	bcgsc.ca	37	chr1	19447843	19447843	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0222222222222222	2	1	0.500667913438418	1.05696559503666	0.328023805356205	1	1	0	gcgagcaccttgctgccgcaCagagcacaggagagcagttg	14	12	0	2	rs1044010	byfrequency	TCGA-OR-A5L3-01A-11D-A29I-10	TCGA-OR-A5L3-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	20de8d93-d3ca-4127-a242-4b4883523118	4a788687-ee2a-41b7-809d-410076aa453b	.	UBR4-612	NM_020765	exon68	c.G9981C	p.L3327L	GCCGCACAGAGCA	.	348	11	437	4	C|0.488;G|0.512	0	0	0	0	0	G	19447843	C	G	19447843	2	3	43	1	0	0	0	0	0	0	0	1	16942	465	17	3		3	UBR4	1	19447843	Silent	SNP	C	TCGA-OR-A5L3-01A-11D-A29I-10		19447843	229802778	1	9149										
RSPO1	284654	bcgsc.ca	37	chr1	38079517	38079517	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0222222222222222	2	1	0.500667913438418	1.05696559503666	0.328023805356205	1	1	0	gaaaccacagagctgctgctTcttggagcagggcccccacg	12	14	1	1	rs36043533	byfrequency	TCGA-OR-A5L3-01A-11D-A29I-10	TCGA-OR-A5L3-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	20de8d93-d3ca-4127-a242-4b4883523118	4a788687-ee2a-41b7-809d-410076aa453b	.	RSPO1-22	NM_001242908	exon6	c.A484C	p.K162Q	GCTGCTTCTTGGA	.	219	14	320	2	T|0.954;G|0.046	0	0	0	0	0	G	38079517	T	G	38079517	3	3	43	1	0	0	0	0	1	0	0	0	13744	1792	62	5	315	5	RSPO1	1	38079517	Missense_Mutation	SNP	T	TCGA-OR-A5L3-01A-11D-A29I-10	18631674	38079517	211171104	2	9150										
ZFYVE9	9372	bcgsc.ca	37	chr1	52761610	52761610	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0222222222222222	2	1	0.500667913438418	1.05696559503666	0.328023805356205	1	1	0	gtcagatttcggaagccattGtttggagagacggggcatac	14	7	1	2	novel		TCGA-OR-A5L3-01A-11D-A29I-10	TCGA-OR-A5L3-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	20de8d93-d3ca-4127-a242-4b4883523118	4a788687-ee2a-41b7-809d-410076aa453b	.	ZFYVE9-230	NM_004799	exon12	c.G3294T	p.L1098F	GCCATTGTTTGGA	.	50	4	71	0	.	0	0	0	0	0	T	52761610	G	T	52761610	3	4	43	1	0	0	0	0	1	0	0	0	17708	1368	48	3	3343	3	ZFYVE9	1	52761610	Missense_Mutation	SNP	G	TCGA-OR-A5L3-01A-11D-A29I-10	14682093	52761610	196489011	3	9151										
DHCR24	1718	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	55337052	55337052	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0222222222222222	2	1	0.500667913438418	1.05696559503666	0.328023805356205	1	1	0	ctctgcctcatctgtcatgaCccctgtcataatgacagcct	6	15	5	2	rs181555625	alternate_allele	TCGA-OR-A5L3-01A-11D-A29I-10	TCGA-OR-A5L3-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	20de8d93-d3ca-4127-a242-4b4883523118	4a788687-ee2a-41b7-809d-410076aa453b	.	DHCR24-91	NM_014762	exon5	c.G847C	p.V283L	TCATGACCCCTGT	.	60	6	80	0	C|0.999;A|0.000	8	8	0	0	0	G	55337052	C	G	55337052	3	3	43	1	0	0	0	0	1	0	0	0	4487	507	18	3	723	3	DHCR24	1	55337052	Missense_Mutation	SNP	C	TCGA-OR-A5L3-01A-11D-A29I-10	2575442	55337052	193913569	4	9152										
FCRL2	79368	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	157740445	157740445	+	Frame_Shift_Del	DEL	G	G	-													0.0222222222222222	2	1	0.500667913438418	1.05696559503666	0.328023805356205	1	1	0	gacagaagagggcgccacaaGggtcagcgaatctggaagag					novel		TCGA-OR-A5L3-01A-11D-A29I-10	TCGA-OR-A5L3-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	20de8d93-d3ca-4127-a242-4b4883523118	4a788687-ee2a-41b7-809d-410076aa453b	.	FCRL2-92	NM_030764	exon3	c.64delC	p.L22fs	CCACAAGGGTCAG	.	56	16	36	0	.	0	0	0	0	0	-	157740445	G	-	157740445	7	5	43	1	0	1	0	1	0	0	0	0	5814	1000	35	0	1502	0	FCRL2	1	157740445	Frame_Shift_Del	DEL	G	TCGA-OR-A5L3-01A-11D-A29I-10	102403393	157740445	91510176	5	9153										
GJC2	57165	hgsc.bcm.edu	37	chr1	228346053	228346053	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0222222222222222	2	1	0.500667913438418	1.05696559503666	0.328023805356205	1	1	0	ccgggcccgaccgggcaacaCgatgggcggaggcgcatcca	16	15	0	0	rs116557768		TCGA-OR-A5L3-01A-11D-A29I-10	TCGA-OR-A5L3-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	20de8d93-d3ca-4127-a242-4b4883523118	4a788687-ee2a-41b7-809d-410076aa453b	.	GJC2-68	NM_020435	exon2	c.C594T	p.H198H	GCAACACGATGGG	.	21	14	0	0	C|0.986;T|0.014	0	0	0	0	0	T	228346053	C	T	228346053	2	4	43	1	0	0	0	0	0	0	0	1	6435	535	19	1		1	GJC2	1	228346053	Silent	SNP	C	TCGA-OR-A5L3-01A-11D-A29I-10	70605608	228346053	20904568	6	9154										
C2orf71	388939	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	29295883	29295883	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0222222222222222	2	1	0.500667913438418	1.05696559503666	0.328023805356205	1	1	0	acctttgccataggagccccTgagagcaggcagtcctgggg	14	12	0	1	novel		TCGA-OR-A5L3-01A-11D-A29I-10	TCGA-OR-A5L3-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	20de8d93-d3ca-4127-a242-4b4883523118	4a788687-ee2a-41b7-809d-410076aa453b	.	C2orf71-91	NM_001029883	exon1	c.A1245T	p.S415S	AGCCCCTGAGAGC	.	159	58	118	0	.	0	0	0	0	0	A	29295883	T	A	29295883	2	1	43	1	0	0	0	0	0	0	0	1	2197	1567	55	5		5	C2orf71	2	29295883	Silent	SNP	T	TCGA-OR-A5L3-01A-11D-A29I-10		29295883	213903490	7	9155										
GALNT14	79623	broad.mit.edu;bcgsc.ca	37	chr2	31147655	31147655	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0222222222222222	2	1	0.500667913438418	1.05696559503666	0.328023805356205	1	1	0	ccacttgaagctctggcagcGcagattcttcctcaggtcca	9	14	3	2	novel		TCGA-OR-A5L3-01A-11D-A29I-10	TCGA-OR-A5L3-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	20de8d93-d3ca-4127-a242-4b4883523118	4a788687-ee2a-41b7-809d-410076aa453b	.	GALNT14-93	NM_001253826	exon13	c.C1201T	p.R401C	GGCAGCGCAGATT	.	76	4	85	0	.	0	0	0	0	0	A	31147655	G	A	31147655	3	1	43	1	0	0	0	0	1	0	0	0	6232	1087	38	1	488	1	GALNT14	2	31147655	Missense_Mutation	SNP	G	TCGA-OR-A5L3-01A-11D-A29I-10	1851772	31147655	212051718	8	9156										
SLC5A7	60482	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	chr2	108627278	108627278	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0222222222222222	2	1	0.500667913438418	1.05696559503666	0.328023805356205	1	1	0	gccttccttgatgttgattcCagtccagaagggtctgggac	12	10	1	3	novel		TCGA-OR-A5L3-01A-11D-A29I-10	TCGA-OR-A5L3-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	20de8d93-d3ca-4127-a242-4b4883523118	4a788687-ee2a-41b7-809d-410076aa453b	.	SLC5A7-93	NM_021815	exon9	c.C1704T	p.S568S	TGATTCCAGTCCA	.	21	10	18	0	.	0	0	0	0	0	T	108627278	C	T	108627278	2	4	43	1	0	0	0	0	0	0	0	1	14705	581	21	3		3	SLC5A7	2	108627278	Silent	SNP	C	TCGA-OR-A5L3-01A-11D-A29I-10	77479623	108627278	134572095	9	9157										
IWS1	55677	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	128281317	128281317	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0222222222222222	2	1	0.500667913438418	1.05696559503666	0.328023805356205	1	1	0	ctcatttacatcatcctcacCgtctgaccctgaatcccgtt	4	16	4	2	novel		TCGA-OR-A5L3-01A-11D-A29I-10	TCGA-OR-A5L3-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	20de8d93-d3ca-4127-a242-4b4883523118	4a788687-ee2a-41b7-809d-410076aa453b	.	IWS1-91	NM_017969	exon2	c.G85C	p.G29R	CCTCACCGTCTGA	.	101	33	47	0	.	0	0	0	0	0	G	128281317	C	G	128281317	3	3	43	1	0	0	0	0	1	0	0	0	7952	652	23	2	2426	2	IWS1	2	128281317	Missense_Mutation	SNP	C	TCGA-OR-A5L3-01A-11D-A29I-10	19654039	128281317	114918056	10	9158										
HJURP	55355	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	234750050	234750050	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0222222222222222	2	1	0.500667913438418	1.05696559503666	0.328023805356205	1	1	0	tgttcatggcccaggagtccGggaggcacatccggcgaggc	16	12	1	0	rs148843421	byfrequency	TCGA-OR-A5L3-01A-11D-A29I-10	TCGA-OR-A5L3-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	20de8d93-d3ca-4127-a242-4b4883523118	4a788687-ee2a-41b7-809d-410076aa453b	.	HJURP-69	NM_018410	exon8	c.C1376T	p.P459L	GAGTCCGGGAGGC	.	82	17	77	0	G|1.000;A|0.000	0	0	0	0	0	A	234750050	G	A	234750050	3	1	43	1	0	0	0	0	1	0	0	0	7210	1116	39	1	878	1	HJURP	2	234750050	Missense_Mutation	SNP	G	TCGA-OR-A5L3-01A-11D-A29I-10	106468733	234750050	8449323	11	9159										
ANKMY1	51281	bcgsc.ca	37	chr2	241465261	241465261	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0222222222222222	2	1	0.500667913438418	1.05696559503666	0.328023805356205	1	1	0	ttgacaatgtcgttgtggcaGtgagtctggagggagatgag	17	4	1	4	rs35186665	byfrequency	TCGA-OR-A5L3-01A-11D-A29I-10	TCGA-OR-A5L3-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	20de8d93-d3ca-4127-a242-4b4883523118	4a788687-ee2a-41b7-809d-410076aa453b	.	ANKMY1-90	NM_016552	exon6	c.C909T	p.H303H	GTGGCAGTGAGTC	.	72	4	50	0	G|0.934;A|0.066	0	0	0	0	0	A	241465261	G	A	241465261	2	1	43	1	0	0	0	0	0	0	0	1	634	1020	36	3		3	ANKMY1	2	241465261	Silent	SNP	G	TCGA-OR-A5L3-01A-11D-A29I-10	6715211	241465261	1734112	12	9160										
SNED1	25992	hgsc.bcm.edu	37	chr2	242011084	242011084	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0222222222222222	2	1	0.500667913438418	1.05696559503666	0.328023805356205	1	1	0	cccggcgcgcctgccggagcTgcgcctgctcaatgaccaca	12	18	1	1	rs17440466	byfrequency	TCGA-OR-A5L3-01A-11D-A29I-10	TCGA-OR-A5L3-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	20de8d93-d3ca-4127-a242-4b4883523118	4a788687-ee2a-41b7-809d-410076aa453b	.	SNED1-72	NM_001080437	exon25	c.T3683C	p.L1228P	CGGAGCTGCGCCT	.	18	18	1	0	T|0.877;C|0.123	0	0	0	0	0	C	242011084	T	C	242011084	3	2	43	1	0	0	0	0	1	0	0	0	14880	1580	55	4	3781	4	SNED1	2	242011084	Missense_Mutation	SNP	T	TCGA-OR-A5L3-01A-11D-A29I-10	545823	242011084	1188289	13	9161										
PDCD6IP	10015	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	33877676	33877676	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0222222222222222	2	1	0.500667913438418	1.05696559503666	0.328023805356205	1	1	0	tatcatgatcgagttccagaCcttaaagatctagatcctat	6	9	2	4	novel		TCGA-OR-A5L3-01A-11D-A29I-10	TCGA-OR-A5L3-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	20de8d93-d3ca-4127-a242-4b4883523118	4a788687-ee2a-41b7-809d-410076aa453b	.	PDCD6IP-228	NM_001162429	exon8	c.C990T	p.D330D	TCCAGACCTTAAA	.	153	53	110	0	.	2	2	0	0	0	T	33877676	C	T	33877676	2	4	43	1	0	0	0	0	0	0	0	1	11653	506	18	3		3	PDCD6IP	3	33877676	Silent	SNP	C	TCGA-OR-A5L3-01A-11D-A29I-10		33877676	164144754	14	9162										
CTNNB1	1499	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	41266136	41266136	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0222222222222222	2	1	0.500667913438418	1.05696559503666	0.328023805356205	1	1	0	gtgccactaccacagctcctTctctgagtggtaaaggcaat	9	12	1	1	rs121913407	bycluster	TCGA-OR-A5L3-01A-11D-A29I-10	TCGA-OR-A5L3-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	20de8d93-d3ca-4127-a242-4b4883523118	4a788687-ee2a-41b7-809d-410076aa453b	.	CTNNB1-24361	NM_001098209	exon3	c.T133C	p.S45P	GCTCCTTCTCTGA	.	134	57	116	0	.	16	10	6	0	0	C	41266136	T	C	41266136	3	2	43	1	0	0	0	0	1	0	0	0	4022	1783	62	4	139	4	CTNNB1	3	41266136	Missense_Mutation	SNP	T	TCGA-OR-A5L3-01A-11D-A29I-10	7388460	41266136	156756294	15	9163										
CNBP	7555	hgsc.bcm.edu	37	chr3	128889366	128889366	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0222222222222222	2	1	0.500667913438418	1.05696559503666	0.328023805356205	1	1	0	cacagcggtaacagttgactTcacttgtcttgctgcagttg	10	10	2	1	novel		TCGA-OR-A5L3-01A-11D-A29I-10	TCGA-OR-A5L3-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	20de8d93-d3ca-4127-a242-4b4883523118	4a788687-ee2a-41b7-809d-410076aa453b	.	CNBP-226	NM_001127192	exon5	c.A470G	p.E157G	TTGACTTCACTTG	.	77	4	57	0	.	50	50	0	0	0	C	128889366	T	C	128889366	3	2	43	1	0	0	0	0	1	0	0	0	3598	1783	62	4	73	4	CNBP	3	128889366	Missense_Mutation	SNP	T	TCGA-OR-A5L3-01A-11D-A29I-10	87623230	128889366	69133064	16	9164										
CPNE4	131034	bcgsc.ca	37	chr3	131268824	131268824	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0222222222222222	2	1	0.500667913438418	1.05696559503666	0.328023805356205	1	1	0	gtgttagtttcctctgacgcTgacttggcaaccttctggat	10	10	2	2	rs11915192	byfrequency	TCGA-OR-A5L3-01A-11D-A29I-10	TCGA-OR-A5L3-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	20de8d93-d3ca-4127-a242-4b4883523118	4a788687-ee2a-41b7-809d-410076aa453b	.	CPNE4-92	NM_130808	exon14	c.A1269G	p.S423S	TGACGCTGACTTG	.	172	6	149	0	T|0.840;C|0.160	0	0	0	0	0	C	131268824	T	C	131268824	2	2	43	1	0	0	0	0	0	0	0	1	3820	1567	55	4		4	CPNE4	3	131268824	Silent	SNP	T	TCGA-OR-A5L3-01A-11D-A29I-10	2379458	131268824	66753606	17	9165										
IDUA	3425	broad.mit.edu	37	chr4	996204	996204	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0222222222222222	2	1	0.500667913438418	1.05696559503666	0.328023805356205	1	1	0	cgcgcttccaggtcaacaacAcccgcccgccgcacgtgcag	10	19	1	0	novel		TCGA-OR-A5L3-01A-11D-A29I-10	TCGA-OR-A5L3-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	20de8d93-d3ca-4127-a242-4b4883523118	4a788687-ee2a-41b7-809d-410076aa453b	.	IDUA-91	NM_000203	exon8	c.A1120C	p.T374P	AACAACACCCGCC	.	183	65	60	11	.	8	5	3	0	0	C	996204	A	C	996204	3	2	43	1	0	0	0	0	1	0	0	0	7525	159	6	5	1150	5	IDUA	4	996204	Missense_Mutation	SNP	A	TCGA-OR-A5L3-01A-11D-A29I-10		996204	190158072	18	9166										
CRIPAK	285464	hgsc.bcm.edu	37	chr4	1388755	1388755	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0222222222222222	2	1	0.500667913438418	1.05696559503666	0.328023805356205	1	1	0	cccgcctgctcacacgtgccCatgcggagtgcccgcctgct	11	19	1	0	rs141481663	byfrequency	TCGA-OR-A5L3-01A-11D-A29I-10	TCGA-OR-A5L3-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	20de8d93-d3ca-4127-a242-4b4883523118	4a788687-ee2a-41b7-809d-410076aa453b	.	CRIPAK-90	NM_175918	exon1	c.C456G	p.P152P	CGTGCCCATGCGG	.	24	13	2	0	C|0.960;G|0.040	11	3	8	0	0	G	1388755	C	G	1388755	2	3	43	1	0	0	0	0	0	0	0	1	3883	581	21	3		3	CRIPAK	4	1388755	Silent	SNP	C	TCGA-OR-A5L3-01A-11D-A29I-10	392551	1388755	189765521	19	9167										
CRIPAK	285464	hgsc.bcm.edu	37	chr4	1389070	1389070	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0222222222222222	2	1	0.500667913438418	1.05696559503666	0.328023805356205	1	1	0	ctgctcacgtgccgatgtggAgtgcccgcctgctcacacgt	12	15	2	0	rs151096093	byfrequency	TCGA-OR-A5L3-01A-11D-A29I-10	TCGA-OR-A5L3-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	20de8d93-d3ca-4127-a242-4b4883523118	4a788687-ee2a-41b7-809d-410076aa453b	.	CRIPAK-90	NM_175918	exon1	c.A771G	p.G257G	ATGTGGAGTGCCC	.	43	14	6	0	A|0.981;G|0.019	8	2	6	0	0	G	1389070	A	G	1389070	2	3	43	1	0	0	0	0	0	0	0	1	3883	291	11	4		4	CRIPAK	4	1389070	Silent	SNP	A	TCGA-OR-A5L3-01A-11D-A29I-10	315	1389070	189765206	20	9168										
GABRB1	2560	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	47408836	47408836	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0222222222222222	2	1	0.500667913438418	1.05696559503666	0.328023805356205	1	1	0	tcctggctctgctggagtatGcctttgtaaattacatcttc	8	10	2	0	novel		TCGA-OR-A5L3-01A-11D-A29I-10	TCGA-OR-A5L3-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	20de8d93-d3ca-4127-a242-4b4883523118	4a788687-ee2a-41b7-809d-410076aa453b	.	GABRB1-92	NM_000812	exon8	c.G973A	p.A325T	GAGTATGCCTTTG	.	98	39	80	0	.	0	0	0	0	0	A	47408836	G	A	47408836	3	1	43	1	0	0	0	0	1	0	0	0	6185	1319	46	3	1003	3	GABRB1	4	47408836	Missense_Mutation	SNP	G	TCGA-OR-A5L3-01A-11D-A29I-10	46019766	47408836	143745440	21	9169										
PF4	5196	broad.mit.edu	37	chr4	74846972	74846972	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0222222222222222	2	1	0.500667913438418	1.05696559503666	0.328023805356205	1	1	0	ttgtacagcggggcttgcagGtccaagcaaattttccttcc	10	11	0	0	rs62313967		TCGA-OR-A5L3-01A-11D-A29I-10	TCGA-OR-A5L3-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	20de8d93-d3ca-4127-a242-4b4883523118	4a788687-ee2a-41b7-809d-410076aa453b	.	PF4-90	NM_002619	exon3	c.C255T	p.D85D	TTGCAGGTCCAAG	.	111	9	106	1	.	0	0	0	0	0	A	74846972	G	A	74846972	2	1	43	1	0	0	0	0	0	0	0	1	11781	1252	44	3		3	PF4	4	74846972	Silent	SNP	G	TCGA-OR-A5L3-01A-11D-A29I-10	27438136	74846972	116307304	22	9170										
DSPP	1834	bcgsc.ca	37	chr4	88537027	88537027	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0222222222222222	2	1	0.500667913438418	1.05696559503666	0.328023805356205	1	1	0	gacagcagtgatagcagtgaCagcagtgacagcagcgacag	14	9	0	3	novel		TCGA-OR-A5L3-01A-11D-A29I-10	TCGA-OR-A5L3-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	20de8d93-d3ca-4127-a242-4b4883523118	4a788687-ee2a-41b7-809d-410076aa453b	.	DSPP-90	NM_014208	exon5	c.C3213A	p.D1071E	CAGTGACAGCAGT	.	669	23	417	2	.	0	0	0	0	0	A	88537027	C	A	88537027	3	1	43	1	0	0	0	0	1	0	0	0	4793	477	17	3	3227	3	DSPP	4	88537027	Missense_Mutation	SNP	C	TCGA-OR-A5L3-01A-11D-A29I-10	13690055	88537027	102617249	23	9171										
DSPP	1834	mdanderson.org	37	chr4	88537087	88537087	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0222222222222222	2	1	0.500667913438418	1.05696559503666	0.328023805356205	1	1	0	agtgatagcagtgacagcagCaatagcagtgacagcagcga	13	8	0	3	novel		TCGA-OR-A5L3-01A-11D-A29I-10	TCGA-OR-A5L3-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	20de8d93-d3ca-4127-a242-4b4883523118	4a788687-ee2a-41b7-809d-410076aa453b	.	DSPP-90	NM_014208	exon5	c.C3273T	p.S1091S	CAGCAGCAATAGC	.	187	31	192	3	.	0	0	0	0	0	T	88537087	C	T	88537087	2	4	43	1	0	0	0	0	0	0	0	1	4793	709	25	3		3	DSPP	4	88537087	Silent	SNP	C	TCGA-OR-A5L3-01A-11D-A29I-10	60	88537087	102617189	24	9172										
DCHS2	54798	broad.mit.edu;bcgsc.ca	37	chr4	155410822	155410822	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0222222222222222	2	1	0.500667913438418	1.05696559503666	0.328023805356205	1	1	0	gcctcgtcggcatcggaggcGctgacccacatgactacagt	12	14	0	2	rs4696593	byfrequency	TCGA-OR-A5L3-01A-11D-A29I-10	TCGA-OR-A5L3-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	20de8d93-d3ca-4127-a242-4b4883523118	4a788687-ee2a-41b7-809d-410076aa453b	.	DCHS2-94	NM_001142552	exon1	c.C1686T	p.S562S	GGAGGCGCTGACC	.	84	4	47	0	G|0.377;A|0.623	0	0	0	0	0	A	155410822	G	A	155410822	2	1	43	1	0	0	0	0	0	0	0	1	4294	1078	38	1		1	DCHS2	4	155410822	Silent	SNP	G	TCGA-OR-A5L3-01A-11D-A29I-10	66873735	155410822	35743454	25	9173										
HSD17B4	3295	ucsc.edu;bcgsc.ca	37	chr5	118861713	118861713	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0222222222222222	2	1	0.500667913438418	1.05696559503666	0.328023805356205	1	1	0	atgtgtcaagattcaaggcaAttaaggtaaatgtgtattac	9	4	2	1	rs11205	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-OR-A5L3-01A-11D-A29I-10	TCGA-OR-A5L3-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	20de8d93-d3ca-4127-a242-4b4883523118	4a788687-ee2a-41b7-809d-410076aa453b	.	HSD17B4-92	NM_001199291	exon20	c.A1750G	p.I584V	AAGGCAATTAAGG	.	46	5	49	0	A|0.591;G|0.409	0	0	0	0	0	G	118861713	A	G	118861713	3	3	43	1	0	0	0	0	1	0	0	0	7407	101	4	4	1749	4	HSD17B4	5	118861713	Missense_Mutation	SNP	A	TCGA-OR-A5L3-01A-11D-A29I-10		118861713	62053547	26	9174										
RAD50	10111	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	131927722	131927722	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0222222222222222	2	1	0.500667913438418	1.05696559503666	0.328023805356205	1	1	0	ccagggacagacttgccaaaTtgaagtaagttgcaacattt	9	8	0	2	novel		TCGA-OR-A5L3-01A-11D-A29I-10	TCGA-OR-A5L3-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	20de8d93-d3ca-4127-a242-4b4883523118	4a788687-ee2a-41b7-809d-410076aa453b	.	RAD50-229	NM_005732	exon11	c.T1789C	p.L597L	GCCAAATTGAAGT	.	144	54	118	0	.	0	0	0	0	0	C	131927722	T	C	131927722	2	2	43	1	0	0	0	0	0	0	0	1	13019	1490	52	4		4	RAD50	5	131927722	Silent	SNP	T	TCGA-OR-A5L3-01A-11D-A29I-10	13066009	131927722	48987538	27	9175										
PCDHB5	26167	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	140515569	140515569	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0222222222222222	2	1	0.500667913438418	1.05696559503666	0.328023805356205	1	1	0	ttcatgttgctacgcataatCgcggagatggcagaaaatac	10	8	1	2	novel		TCGA-OR-A5L3-01A-11D-A29I-10	TCGA-OR-A5L3-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	20de8d93-d3ca-4127-a242-4b4883523118	4a788687-ee2a-41b7-809d-410076aa453b	.	PCDHB5-95	NM_015669	exon1	c.C553T	p.R185C	CATAATCGCGGAG	.	142	57	136	0	.	0	0	0	0	0	T	140515569	C	T	140515569	3	4	43	1	0	0	0	0	1	0	0	0	11574	884	31	1	555	1	PCDHB5	5	140515569	Missense_Mutation	SNP	C	TCGA-OR-A5L3-01A-11D-A29I-10	8587847	140515569	40399691	28	9176										
RANBP17	64901	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	170648797	170648797	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0222222222222222	2	1	0.500667913438418	1.05696559503666	0.328023805356205	1	1	0	ttttgatgtatcatctcctaAtggaattcttctcttcagag	6	8	5	2	novel		TCGA-OR-A5L3-01A-11D-A29I-10	TCGA-OR-A5L3-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	20de8d93-d3ca-4127-a242-4b4883523118	4a788687-ee2a-41b7-809d-410076aa453b	.	RANBP17-524	NM_022897	exon22	c.A2375G	p.N792S	CTCCTAATGGAAT	.	29	13	34	0	.	0	0	0	0	0	G	170648797	A	G	170648797	3	3	43	1	0	0	0	0	1	0	0	0	13062	101	4	4	2461	4	RANBP17	5	170648797	Missense_Mutation	SNP	A	TCGA-OR-A5L3-01A-11D-A29I-10	30133228	170648797	10266463	29	9177										
ATXN1	6310	hgsc.bcm.edu	37	chr6	16327900	16327900	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0222222222222222	2	1	0.500667913438418	1.05696559503666	0.328023805356205	1	1	0	tgctgctgctgctgctgctgCtgctgctgatgctgatgctg	14	11	0	2	rs200111316		TCGA-OR-A5L3-01A-11D-A29I-10	TCGA-OR-A5L3-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	20de8d93-d3ca-4127-a242-4b4883523118	4a788687-ee2a-41b7-809d-410076aa453b	.	ATXN1-93	NM_001128164	exon7	c.G642T	p.Q214H	CTGCTGCTGCTGC	.	52	9	14	0	.	1	1	0	0	0	A	16327900	C	A	16327900	3	1	43	1	0	0	0	0	1	0	0	0	1210	796	28	3	1813	3	ATXN1	6	16327900	Missense_Mutation	SNP	C	TCGA-OR-A5L3-01A-11D-A29I-10		16327900	154787167	30	9178										
HLA-DQB1	3119	bcgsc.ca	37	chr6	32629129	32629129	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0222222222222222	2	1	0.500667913438418	1.05696559503666	0.328023805356205	1	1	0	cctggggttcctcacctttcTgactcctttgacggatgata	9	12	2	3	rs1130432	byfrequency	TCGA-OR-A5L3-01A-11D-A29I-10	TCGA-OR-A5L3-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	20de8d93-d3ca-4127-a242-4b4883523118	4a788687-ee2a-41b7-809d-410076aa453b	.	HLA-DQB1-22	NM_002123	exon4	c.A767G	p.Q256R	CCTTTCTGACTCC	.	34	5	23	0	T|0.827;C|0.173	0	0	0	0	0	C	32629129	T	C	32629129	3	2	43	1	0	0	0	0	1	0	0	0	7227	1580	55	4	26	4	HLA-DQB1	6	32629129	Missense_Mutation	SNP	T	TCGA-OR-A5L3-01A-11D-A29I-10	16301229	32629129	138485938	31	9179										
UTRN	7402	ucsc.edu	37	chr6	145051594	145051594	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0222222222222222	2	1	0.500667913438418	1.05696559503666	0.328023805356205	1	1	0	ccaattgaggcccctgaagaGccaagaagaaacctacaatc	8	12	0	5	rs4305737	byfrequency;alternate_allele	TCGA-OR-A5L3-01A-11D-A29I-10	TCGA-OR-A5L3-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	20de8d93-d3ca-4127-a242-4b4883523118	4a788687-ee2a-41b7-809d-410076aa453b	.	UTRN-95	NM_007124	exon53	c.G7911T	p.E2637D	TGAAGAGCCAAGA	.	33	4	25	0	G|0.490;A|0.510	0	0	0	0	0	T	145051594	G	T	145051594	3	4	43	1	0	0	0	0	1	0	0	0	17141	962	34	3	8121	3	UTRN	6	145051594	Missense_Mutation	SNP	G	TCGA-OR-A5L3-01A-11D-A29I-10	112422465	145051594	26063473	32	9180										
NOM1	64434	hgsc.bcm.edu	37	chr7	156742501	156742501	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0222222222222222	2	1	0.500667913438418	1.05696559503666	0.328023805356205	1	1	0	gacgcgtggtccgcatgaagCgcagaggcgggcgcgggccg	20	12	0	2	rs6969990	byfrequency	TCGA-OR-A5L3-01A-11D-A29I-10	TCGA-OR-A5L3-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	20de8d93-d3ca-4127-a242-4b4883523118	4a788687-ee2a-41b7-809d-410076aa453b	.	NOM1-90	NM_138400	exon1	c.C70G	p.R24G	ATGAAGCGCAGAG	.	10	7	0	0	C|0.663;G|0.337	0	0	0	0	0	G	156742501	C	G	156742501	3	3	43	1	0	0	0	0	1	0	0	0	10559	768	27	2	72	2	NOM1	7	156742501	Missense_Mutation	SNP	C	TCGA-OR-A5L3-01A-11D-A29I-10		156742501	2396162	33	9181										
SAMD12	401474	bcgsc.ca	37	chr8	119391791	119391791	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0222222222222222	2	1	0.500667913438418	1.05696559503666	0.328023805356205	1	1	0	atccacccatcaggaagcaaTagggtaccttgtgtgagtaa	10	9	1	1	rs5020517	byfrequency	TCGA-OR-A5L3-01A-11D-A29I-10	TCGA-OR-A5L3-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	20de8d93-d3ca-4127-a242-4b4883523118	4a788687-ee2a-41b7-809d-410076aa453b	.	SAMD12-227	NM_207506	exon4	c.A471G	p.L157L	AAGCAATAGGGTA	.	136	6	96	0	T|0.303;C|0.697	0	0	0	0	0	C	119391791	T	C	119391791	2	2	43	1	0	0	0	0	0	0	0	1	13852	1393	49	4		4	SAMD12	8	119391791	Silent	SNP	T	TCGA-OR-A5L3-01A-11D-A29I-10		119391791	26972231	34	9182										
TSNARE1	203062	bcgsc.ca	37	chr8	143413136	143413136	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0222222222222222	2	1	0.500667913438418	1.05696559503666	0.328023805356205	1	1	0	actggagttgattcggaagaCgttggccgacatctcctgga	13	9	1	2	rs10435683	byfrequency	TCGA-OR-A5L3-01A-11D-A29I-10	TCGA-OR-A5L3-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	20de8d93-d3ca-4127-a242-4b4883523118	4a788687-ee2a-41b7-809d-410076aa453b	.	TSNARE1-90	NM_145003	exon5	c.G802A	p.V268I	GGAAGACGTTGGC	.	159	6	154	1	C|0.606;T|0.394	0	0	0	0	0	T	143413136	C	T	143413136	3	4	43	1	0	0	0	0	1	0	0	0	16668	536	19	1	775	1	TSNARE1	8	143413136	Missense_Mutation	SNP	C	TCGA-OR-A5L3-01A-11D-A29I-10	24021345	143413136	2950886	35	9183										
ZNF696	79943	hgsc.bcm.edu	37	chr8	144378868	144378868	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0222222222222222	2	1	0.500667913438418	1.05696559503666	0.328023805356205	1	1	0	ggcttcttccggcaccagcgActccacacgggcgagaagcc	12	16	1	1	rs7386259	byfrequency	TCGA-OR-A5L3-01A-11D-A29I-10	TCGA-OR-A5L3-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	20de8d93-d3ca-4127-a242-4b4883523118	4a788687-ee2a-41b7-809d-410076aa453b	.	ZNF696-90	NM_030895	exon3	c.A1023G	p.R341R	CCAGCGACTCCAC	.	4	4	0	0	A|0.118;G|0.882	0	0	0	0	0	G	144378868	A	G	144378868	2	3	43	1	0	0	0	0	0	0	0	1	18136	262	10	4		4	ZNF696	8	144378868	Silent	SNP	A	TCGA-OR-A5L3-01A-11D-A29I-10	965732	144378868	1985154	36	9184										
PLEC	5339	hgsc.bcm.edu	37	chr8	144990528	144990528	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0222222222222222	2	1	0.500667913438418	1.05696559503666	0.328023805356205	1	1	0	cgcgagccggtgcgggagccAgcggtagagccggagccgct	19	13	0	1	rs7014582	byfrequency	TCGA-OR-A5L3-01A-11D-A29I-10	TCGA-OR-A5L3-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	20de8d93-d3ca-4127-a242-4b4883523118	4a788687-ee2a-41b7-809d-410076aa453b	.	PLEC-141	NM_201380	exon32	c.T13872C	p.A4624A	GGAGCCAGCGGTA	.	11	6	1	0	A|0.536;G|0.464	7	6	1	0	0	G	144990528	A	G	144990528	2	3	43	1	0	0	0	0	0	0	0	1	12081	175	7	4		4	PLEC	8	144990528	Silent	SNP	A	TCGA-OR-A5L3-01A-11D-A29I-10	611660	144990528	1373494	37	9185										
PLEC	5339	hgsc.bcm.edu	37	chr8	144999417	144999417	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0222222222222222	2	1	0.500667913438418	1.05696559503666	0.328023805356205	1	1	0	agggccacctgtacctgccgCgctcgctccacctcggcctg	11	19	0	0	rs55836855	byfrequency	TCGA-OR-A5L3-01A-11D-A29I-10	TCGA-OR-A5L3-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	20de8d93-d3ca-4127-a242-4b4883523118	4a788687-ee2a-41b7-809d-410076aa453b	.	PLEC-141	NM_201380	exon31	c.G5091A	p.A1697A	CTGCCGCGCTCGC	.	7	4	3	0	C|0.731;T|0.269	0	0	0	0	0	T	144999417	C	T	144999417	2	4	43	1	0	0	0	0	0	0	0	1	12081	755	27	1		1	PLEC	8	144999417	Silent	SNP	C	TCGA-OR-A5L3-01A-11D-A29I-10	8889	144999417	1364605	38	9186										
OPLAH	26873	hgsc.bcm.edu	37	chr8	145107390	145107390	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0222222222222222	2	1	0.500667913438418	1.05696559503666	0.328023805356205	1	1	0	cccaaaggcccccaggatgaCatccaccacgcgctgcgacg	10	18	0	1	rs185836803		TCGA-OR-A5L3-01A-11D-A29I-10	TCGA-OR-A5L3-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	20de8d93-d3ca-4127-a242-4b4883523118	4a788687-ee2a-41b7-809d-410076aa453b	.	OPLAH-68	NM_017570	exon23	c.G3265A	p.V1089I	GGATGACATCCAC	.	19	11	0	0	C|0.998;T|0.002	13	4	9	0	0	T	145107390	C	T	145107390	3	4	43	1	0	0	0	0	1	0	0	0	10905	478	17	3	623	3	OPLAH	8	145107390	Missense_Mutation	SNP	C	TCGA-OR-A5L3-01A-11D-A29I-10	107973	145107390	1256632	39	9187										
NACC2	138151	hgsc.bcm.edu	37	chr9	138903545	138903545	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0222222222222222	2	1	0.500667913438418	1.05696559503666	0.328023805356205	1	1	0	ccgtccacctcctcgccggcGtcgaaggcggggttggcggc	16	16	0	0	rs79175912		TCGA-OR-A5L3-01A-11D-A29I-10	TCGA-OR-A5L3-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	20de8d93-d3ca-4127-a242-4b4883523118	4a788687-ee2a-41b7-809d-410076aa453b	.	NACC2-90	NM_144653	exon6	c.C1581T	p.D527D	GCCGGCGTCGAAG	.	25	14	3	0	G|0.999;A|0.001	0	0	0	0	0	A	138903545	G	A	138903545	2	1	43	1	0	0	0	0	0	0	0	1	10164	1136	40	1		1	NACC2	9	138903545	Silent	SNP	G	TCGA-OR-A5L3-01A-11D-A29I-10		138903545	2309886	40	9188										
GPSM1	26086	broad.mit.edu;bcgsc.ca	37	chr9	139235606	139235606	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0222222222222222	2	1	0.500667913438418	1.05696559503666	0.328023805356205	1	1	0	tcttcttggcctcagggacaGcacaggcctgaggttcaccc	11	14	4	1	rs78403475		TCGA-OR-A5L3-01A-11D-A29I-10	TCGA-OR-A5L3-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	20de8d93-d3ca-4127-a242-4b4883523118	4a788687-ee2a-41b7-809d-410076aa453b	.	GPSM1-90	NM_015597	exon9	c.G1363C	p.A455P	GGGACAGCACAGG	.	180	7	120	0	G|0.900;C|0.100	0	0	0	0	0	C	139235606	G	C	139235606	3	2	43	1	0	0	0	0	1	0	0	0	6755	971	34	3	1397	3	GPSM1	9	139235606	Missense_Mutation	SNP	G	TCGA-OR-A5L3-01A-11D-A29I-10	332061	139235606	1977825	41	9189										
NOTCH1	4851	broad.mit.edu	37	chr9	139417461	139417462	+	Frame_Shift_Ins	INS	-	-	G													0.0222222222222222	2	1	0.500667913438418	1.05696559503666	0.328023805356205	1	1	0	gagccgacctcgttgtggcaINSggtgcctccgtggcggcaaa					rs146350322	by1000genomes;alternate_allele	TCGA-OR-A5L3-01A-11D-A29I-10	TCGA-OR-A5L3-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	20de8d93-d3ca-4127-a242-4b4883523118	4a788687-ee2a-41b7-809d-410076aa453b	.	NOTCH1-5459	NM_017617	exon4	c.583_584insC	p.C195fs	TGTGGCAGGTGCC	.	106	8	12	0	.	0	0	0	0	0	G	139417462	-	G	139417461	7	5	43	1	0	1	1	0	0	0	0	0	10576	188	7	0	7208	0	NOTCH1	9	139417461	Frame_Shift_Ins	INS	-	TCGA-OR-A5L3-01A-11D-A29I-10	181855	139417461	1795970	42	9190										
FBXW5	54461	broad.mit.edu	37	chr9	139837138	139837138	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0222222222222222	2	1	0.500667913438418	1.05696559503666	0.328023805356205	1	1	0	tccgcacgcgggacagcagcGcgaaggagtctgtggggagg	19	10	1	0	rs148935719	byfrequency	TCGA-OR-A5L3-01A-11D-A29I-10	TCGA-OR-A5L3-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	20de8d93-d3ca-4127-a242-4b4883523118	4a788687-ee2a-41b7-809d-410076aa453b	.	FBXW5-226	NM_018998	exon5	c.C536T	p.A179V	AGCAGCGCGAAGG	.	125	5	49	3	G|0.998;A|0.002	0	0	0	0	0	A	139837138	G	A	139837138	3	1	43	1	0	0	0	0	1	0	0	0	5787	1087	38	1	1184	1	FBXW5	9	139837138	Missense_Mutation	SNP	G	TCGA-OR-A5L3-01A-11D-A29I-10	419677	139837138	1376293	43	9191										
ECHDC3	79746	hgsc.bcm.edu	37	chr10	11784633	11784633	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0222222222222222	2	1	0.500667913438418	1.05696559503666	0.328023805356205	1	1	0	gtgggcccatgtgtctccggCgcggcccctgggcccagctc	15	17	1	0	rs11558855		TCGA-OR-A5L3-01A-11D-A29I-10	TCGA-OR-A5L3-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	20de8d93-d3ca-4127-a242-4b4883523118	4a788687-ee2a-41b7-809d-410076aa453b	.	ECHDC3-90	NM_024693	exon1	c.C58T	p.R20C	CTCCGGCGCGGCC	.	6	6	0	0	C|0.878;T|0.122	0	0	0	0	0	T	11784633	C	T	11784633	3	4	43	1	0	0	0	0	1	0	0	0	4906	768	27	1	60	1	ECHDC3	10	11784633	Missense_Mutation	SNP	C	TCGA-OR-A5L3-01A-11D-A29I-10		11784633	123750114	44	9192										
PTPLA	9200	hgsc.bcm.edu	37	chr10	17659149	17659149	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.0222222222222222	2	1	0.500667913438418	1.05696559503666	0.328023805356205	1	1	0	gacccccaggcgcctccgctCgccgggagcctcccggtcct	12	21	0	0	rs7895850	byfrequency	TCGA-OR-A5L3-01A-11D-A29I-10	TCGA-OR-A5L3-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	20de8d93-d3ca-4127-a242-4b4883523118	4a788687-ee2a-41b7-809d-410076aa453b	.	PTPLA-226	NM_014241	exon1	c.G190C	p.E64Q	TCCGCTCGCCGGG	.	11	7	0	0	C|0.007;G|0.002;T|0.991	0	0	0	0	0	G	17659149	C	G	17659149	3	3	43	1	0	0	0	0	1	0	0	0	12807	893	31	2	704	2	PTPLA	10	17659149	Missense_Mutation	SNP	C	TCGA-OR-A5L3-01A-11D-A29I-10	5874516	17659149	117875598	45	9193										
SLC25A16	8034	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr10	70243288	70243288	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0222222222222222	2	1	0.500667913438418	1.05696559503666	0.328023805356205	1	1	0	ttaagagataaaccacgataGagtccttttcgaattccatg	7	8	0	2	novel		TCGA-OR-A5L3-01A-11D-A29I-10	TCGA-OR-A5L3-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	20de8d93-d3ca-4127-a242-4b4883523118	4a788687-ee2a-41b7-809d-410076aa453b	.	SLC25A16-90	NM_152707	exon9	c.C900G	p.L300L	ACGATAGAGTCCT	.	51	12	38	0	.	1	0	1	0	0	C	70243288	G	C	70243288	2	2	43	1	0	0	0	0	0	0	0	1	14513	929	33	3		3	SLC25A16	10	70243288	Silent	SNP	G	TCGA-OR-A5L3-01A-11D-A29I-10	52584139	70243288	65291459	46	9194										
ACADSB	36	bcgsc.ca	37	chr10	124800853	124800853	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0222222222222222	2	1	0.500667913438418	1.05696559503666	0.328023805356205	1	1	0	tggatcagcagtgctgagcaCgcagggctctttctggtgat	14	9	3	2	rs1140591	byfrequency	TCGA-OR-A5L3-01A-11D-A29I-10	TCGA-OR-A5L3-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	20de8d93-d3ca-4127-a242-4b4883523118	4a788687-ee2a-41b7-809d-410076aa453b	.	ACADSB-92	NM_001609	exon5	c.C639T	p.H213H	TGAGCACGCAGGG	.	83	4	75	0	A|0.000;C|0.783;G|0.000;T|0.217	0	0	0	0	0	T	124800853	C	T	124800853	2	4	43	1	0	0	0	0	0	0	0	1	115	535	19	1		1	ACADSB	10	124800853	Silent	SNP	C	TCGA-OR-A5L3-01A-11D-A29I-10	54557565	124800853	10733894	47	9195										
PWWP2B	170394	hgsc.bcm.edu	37	chr10	134219036	134219036	+	Silent	SNP	G	G	A													0.0222222222222222	2	1	0.500667913438418	1.05696559503666	0.328023805356205	1	1	0	caccgtctgggggacagcgaGcacgagcccgtgtaccgggc					rs11817589	byfrequency	TCGA-OR-A5L3-01A-11D-A29I-10	TCGA-OR-A5L3-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	20de8d93-d3ca-4127-a242-4b4883523118	4a788687-ee2a-41b7-809d-410076aa453b	.	PWWP2B-90	NM_001098637	exon2	c.G1032A	p.E344E	CAGCGAGCACGAG	.	14	7	0	0	G|0.909;A|0.091	2	2	0	0	0	A	134219036	G	A	134219036	2	1	43	1	0	0	0	0	0	0	0	1	12881	962	34	3		3	PWWP2B	10	134219036	Silent	SNP	G	TCGA-OR-A5L3-01A-11D-A29I-10	9418183	134219036	1315711	48	9196	107	2								
PWWP2B	170394	hgsc.bcm.edu	37	chr10	134219045	134219045	+	Silent	SNP	C	C	T													0.0222222222222222	2	1	0.500667913438418	1.05696559503666	0.328023805356205	1	1	0	ggggacagcgagcacgagccCgtgtaccgggccgagctggt					rs11146364	byfrequency	TCGA-OR-A5L3-01A-11D-A29I-10	TCGA-OR-A5L3-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	20de8d93-d3ca-4127-a242-4b4883523118	4a788687-ee2a-41b7-809d-410076aa453b	.	PWWP2B-90	NM_001098637	exon2	c.C1041T	p.P347P	CGAGCCCGTGTAC	.	16	8	0	0	C|0.860;T|0.140	2	2	0	0	0	T	134219045	C	T	134219045	2	4	43	1	0	0	0	0	0	0	0	1	12881	639	23	1		1	PWWP2B	10	134219045	Silent	SNP	C	TCGA-OR-A5L3-01A-11D-A29I-10	9	134219045	1315702	49	9197	107	2								
PHLDA2	7262	broad.mit.edu	37	chr11	2950513	2950513	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0222222222222222	2	1	0.500667913438418	1.05696559503666	0.328023805356205	1	1	0	gtcggaggtgagcaccccgcGcttcttcttccatagctgga	12	13	2	1	novel		TCGA-OR-A5L3-01A-11D-A29I-10	TCGA-OR-A5L3-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	20de8d93-d3ca-4127-a242-4b4883523118	4a788687-ee2a-41b7-809d-410076aa453b	.	PHLDA2-514	NM_003311	exon1	c.C82A	p.R28S	CCCCGCGCTTCTT	.	83	7	19	1	.	0	0	0	0	0	T	2950513	G	T	2950513	3	4	43	1	0	0	0	0	1	0	0	0	11878	1087	38	2	380	2	PHLDA2	11	2950513	Missense_Mutation	SNP	G	TCGA-OR-A5L3-01A-11D-A29I-10		2950513	132056003	50	9198										
NTF3	4908	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	5604093	5604093	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0222222222222222	2	1	0.500667913438418	1.05696559503666	0.328023805356205	1	1	0	caataaactcgtgggctggcGgtggatacggatagacacgt	14	8	0	1	novel		TCGA-OR-A5L3-01A-11D-A29I-10	TCGA-OR-A5L3-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	20de8d93-d3ca-4127-a242-4b4883523118	4a788687-ee2a-41b7-809d-410076aa453b	.	NTF3-205	NM_001102654	exon2	c.G752A	p.R251Q	GCTGGCGGTGGAT	.	79	24	59	0	.	0	0	0	0	0	A	5604093	G	A	5604093	3	1	43	1	0	0	0	0	1	0	0	0	10725	1116	39	1	758	1	NTF3	12	5604093	Missense_Mutation	SNP	G	TCGA-OR-A5L3-01A-11D-A29I-10		5604093	128247802	51	9199										
VWF	7450	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	6174404	6174404	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0222222222222222	2	1	0.500667913438418	1.05696559503666	0.328023805356205	1	1	0	gaagtatctgttgtcaaagcTcttgaagtgtgattgacctg	11	6	3	3	novel		TCGA-OR-A5L3-01A-11D-A29I-10	TCGA-OR-A5L3-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	20de8d93-d3ca-4127-a242-4b4883523118	4a788687-ee2a-41b7-809d-410076aa453b	.	VWF-163	NM_000552	exon11	c.A1192T	p.S398C	CAAAGCTCTTGAA	.	170	57	111	0	.	3	3	0	0	0	A	6174404	T	A	6174404	3	1	43	1	0	0	0	0	1	0	0	0	17284	1551	54	5	7417	5	VWF	12	6174404	Missense_Mutation	SNP	T	TCGA-OR-A5L3-01A-11D-A29I-10	570311	6174404	127677491	52	9200										
KRT72	140807	hgsc.bcm.edu	37	chr12	52995020	52995020	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0222222222222222	2	1	0.500667913438418	1.05696559503666	0.328023805356205	1	1	0	gaaggcggtgcccacgaagcCgcccaggcggccgccgcccc	15	19	0	0	rs57242225	byfrequency	TCGA-OR-A5L3-01A-11D-A29I-10	TCGA-OR-A5L3-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	20de8d93-d3ca-4127-a242-4b4883523118	4a788687-ee2a-41b7-809d-410076aa453b	.	KRT72-96	NM_001146225	exon1	c.G217A	p.G73S	CGAAGCCGCCCAG	.	13	8	1	0	C|0.921;T|0.079	0	0	0	0	0	T	52995020	C	T	52995020	3	4	43	1	0	0	0	0	1	0	0	0	8506	652	23	1	1354	1	KRT72	12	52995020	Missense_Mutation	SNP	C	TCGA-OR-A5L3-01A-11D-A29I-10	46820616	52995020	80856875	53	9201										
RNFT2	84900	hgsc.bcm.edu	37	chr12	117187919	117187919	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0222222222222222	2	1	0.500667913438418	1.05696559503666	0.328023805356205	1	1	0	caccaccatttccaccatggCggccaccgcgggggctccct	10	19	0	0	rs116754010	byfrequency	TCGA-OR-A5L3-01A-11D-A29I-10	TCGA-OR-A5L3-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	20de8d93-d3ca-4127-a242-4b4883523118	4a788687-ee2a-41b7-809d-410076aa453b	.	.	NM_001109903	exon4	c.C357T	p.G119G	CCATGGCGGCCAC	.	7	4	0	0	C|0.954;T|0.046	0	0	0	0	0	T	117187919	C	T	117187919	2	4	43	1	0	0	0	0	0	0	0	1	13537	755	27	1		1	RNFT2	12	117187919	Silent	SNP	C	TCGA-OR-A5L3-01A-11D-A29I-10	64192899	117187919	16663976	54	9202										
OR4K5	79317	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr14	20389141	20389141	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0222222222222222	2	1	0.500667913438418	1.05696559503666	0.328023805356205	1	1	0	cctatgacaggtatgtagccAtatgcaaacccttatactat	6	10	0	1	rs200386813	alternate_allele	TCGA-OR-A5L3-01A-11D-A29I-10	TCGA-OR-A5L3-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	20de8d93-d3ca-4127-a242-4b4883523118	4a788687-ee2a-41b7-809d-410076aa453b	.	OR4K5-70	NM_001005483	exon1	c.A376C	p.I126L	GTAGCCATATGCA	.	259	42	163	0	A|0.999;G|0.001	0	0	0	0	0	C	20389141	A	C	20389141	3	2	43	1	0	0	0	0	1	0	0	0	11102	217	8	5	378	5	OR4K5	14	20389141	Missense_Mutation	SNP	A	TCGA-OR-A5L3-01A-11D-A29I-10		20389141	86960399	55	9203										
HECTD1	25831	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr14	31647449	31647449	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0222222222222222	2	1	0.500667913438418	1.05696559503666	0.328023805356205	1	1	0	aaagggctggtaagaaagtgCgaggaggacatctgtagtga	16	4	1	2	novel		TCGA-OR-A5L3-01A-11D-A29I-10	TCGA-OR-A5L3-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	20de8d93-d3ca-4127-a242-4b4883523118	4a788687-ee2a-41b7-809d-410076aa453b	.	HECTD1-570	NM_015382	exon3	c.G152A	p.R51H	AAAGTGCGAGGAG	.	40	13	33	0	.	0	0	0	0	0	T	31647449	C	T	31647449	3	4	43	1	0	0	0	0	1	0	0	0	7060	768	27	1	7844	1	HECTD1	14	31647449	Missense_Mutation	SNP	C	TCGA-OR-A5L3-01A-11D-A29I-10	11258308	31647449	75702091	56	9204										
TTLL5	23093	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr14	76219245	76219245	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0222222222222222	2	1	0.500667913438418	1.05696559503666	0.328023805356205	1	1	0	ttgcttttcaggtcctacctCgagcataagacctcaatgaa	7	11	2	2	novel		TCGA-OR-A5L3-01A-11D-A29I-10	TCGA-OR-A5L3-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	20de8d93-d3ca-4127-a242-4b4883523118	4a788687-ee2a-41b7-809d-410076aa453b	.	TTLL5-92	NM_015072	exon18	c.C1497T	p.L499L	CTACCTCGAGCAT	.	35	12	32	0	.	0	0	0	0	0	T	76219245	C	T	76219245	2	4	43	1	0	0	0	0	0	0	0	1	16768	871	31	1		1	TTLL5	14	76219245	Silent	SNP	C	TCGA-OR-A5L3-01A-11D-A29I-10	44571796	76219245	31130295	57	9205										
AMN	81693	hgsc.bcm.edu;broad.mit.edu	37	chr14	103396993	103396994	+	In_Frame_Ins	INS	-	-	GCCGGG													0.0222222222222222	2	1	0.500667913438418	1.05696559503666	0.328023805356205	1	1	0	acttcgtcaaccctctgttcINSgccggggccgaggccgaggc					rs36040113		TCGA-OR-A5L3-01A-11D-A29I-10	TCGA-OR-A5L3-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	20de8d93-d3ca-4127-a242-4b4883523118	4a788687-ee2a-41b7-809d-410076aa453b	.	AMN-90	NM_030943	exon12	c.1338_1339insGCCGGG	p.F446delinsFAG	TCTGTTCGCCGGG	.	76	14	10	0	-|1.000;|0.000	0	0	0	0	0	GCCGGG	103396994	-	GCCGGG	103396993	7	5	43	1	0	1	1	0	0	0	0	0	580	883	31	0	1384	0	AMN	14	103396993	In_Frame_Ins	INS	-	TCGA-OR-A5L3-01A-11D-A29I-10	27177748	103396993	3952547	58	9206										
KIF26A	26153	hgsc.bcm.edu	37	chr14	104644099	104644099	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0222222222222222	2	1	0.500667913438418	1.05696559503666	0.328023805356205	1	1	0	caccacagcggtggcagcagTggctatgagagcctgcggcg	16	12	0	1	rs2497297	byfrequency	TCGA-OR-A5L3-01A-11D-A29I-10	TCGA-OR-A5L3-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	20de8d93-d3ca-4127-a242-4b4883523118	4a788687-ee2a-41b7-809d-410076aa453b	.	KIF26A-24	NM_015656	exon12	c.T4974C	p.S1658S	CAGCAGTGGCTAT	.	10	6	0	0	T|0.603;C|0.397	0	0	0	0	0	C	104644099	T	C	104644099	2	2	43	1	0	0	0	0	0	0	0	1	8315	1693	59	4		4	KIF26A	14	104644099	Silent	SNP	T	TCGA-OR-A5L3-01A-11D-A29I-10	1247106	104644099	2705441	59	9207										
OR4N4	283694	bcgsc.ca	37	chr15	22382897	22382897	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0222222222222222	2	1	0.500667913438418	1.05696559503666	0.328023805356205	1	1	0	catgaaccctagagcctgctAtgcaatgatgttggctctgt	10	10	1	3	rs62006710	byfrequency	TCGA-OR-A5L3-01A-11D-A29I-10	TCGA-OR-A5L3-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	20de8d93-d3ca-4127-a242-4b4883523118	4a788687-ee2a-41b7-809d-410076aa453b	.	OR4N4-73	NM_001005241	exon1	c.A425G	p.Y142C	CCTGCTATGCAAT	.	184	7	131	1	A|0.815;G|0.185	0	0	0	0	0	G	22382897	A	G	22382897	3	3	43	1	0	0	0	0	1	0	0	0	11107	449	16	4	427	4	OR4N4	15	22382897	Missense_Mutation	SNP	A	TCGA-OR-A5L3-01A-11D-A29I-10		22382897	80148495	60	9208										
DISP2	85455	hgsc.bcm.edu	37	chr15	40660192	40660192	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0222222222222222	2	1	0.500667913438418	1.05696559503666	0.328023805356205	1	1	0	tcttcatgggcacggctgtgCtggtgcacctggcgctcacg	14	13	3	0	rs8040755	byfrequency	TCGA-OR-A5L3-01A-11D-A29I-10	TCGA-OR-A5L3-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	20de8d93-d3ca-4127-a242-4b4883523118	4a788687-ee2a-41b7-809d-410076aa453b	.	DISP2-92	NM_033510	exon8	c.C1879T	p.L627L	GCTGTGCTGGTGC	.	9	4	2	0	C|0.941;T|0.059	0	0	0	0	0	T	40660192	C	T	40660192	2	4	43	1	0	0	0	0	0	0	0	1	4551	796	28	3		3	DISP2	15	40660192	Silent	SNP	C	TCGA-OR-A5L3-01A-11D-A29I-10	18277295	40660192	61871200	61	9209										
LACTB	114294	hgsc.bcm.edu	37	chr15	63414083	63414083	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0222222222222222	2	1	0.500667913438418	1.05696559503666	0.328023805356205	1	1	0	gagacgccatgtaccggctcAtgtcagcagtgactgcccgg	13	13	2	2	rs34317102	byfrequency	TCGA-OR-A5L3-01A-11D-A29I-10	TCGA-OR-A5L3-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	20de8d93-d3ca-4127-a242-4b4883523118	4a788687-ee2a-41b7-809d-410076aa453b	.	LACTB-90	NM_171846	exon1	c.A13C	p.M5L	CGGCTCATGTCAG	.	5	5	0	0	A|0.226;C|0.774	0	0	0	0	0	C	63414083	A	C	63414083	3	2	43	1	0	0	0	0	1	0	0	0	8619	217	8	5	15	5	LACTB	15	63414083	Missense_Mutation	SNP	A	TCGA-OR-A5L3-01A-11D-A29I-10	22753891	63414083	39117309	62	9210										
CHD2	1106	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr15	93521561	93521561	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0222222222222222	2	1	0.500667913438418	1.05696559503666	0.328023805356205	1	1	0	tgactctgactggaacccccAgaatgacttgcaggcacaag	10	12	1	4	novel		TCGA-OR-A5L3-01A-11D-A29I-10	TCGA-OR-A5L3-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	20de8d93-d3ca-4127-a242-4b4883523118	4a788687-ee2a-41b7-809d-410076aa453b	.	CHD2-229	NM_001271	exon21	c.A2675G	p.Q892R	ACCCCCAGAATGA	.	45	11	37	0	.	0	0	0	0	0	G	93521561	A	G	93521561	3	3	43	1	0	0	0	0	1	0	0	0	3331	188	7	4	2757	4	CHD2	15	93521561	Missense_Mutation	SNP	A	TCGA-OR-A5L3-01A-11D-A29I-10	30107478	93521561	9009831	63	9211										
CLEC16A	23274	bcgsc.ca	37	chr16	11114170	11114170	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0222222222222222	2	1	0.500667913438418	1.05696559503666	0.328023805356205	1	1	0	cgccacctgctctgagagcaCgcaatggagcaggtagctgc	13	13	1	1	rs74163614		TCGA-OR-A5L3-01A-11D-A29I-10	TCGA-OR-A5L3-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	20de8d93-d3ca-4127-a242-4b4883523118	4a788687-ee2a-41b7-809d-410076aa453b	.	CLEC16A-92	NM_015226	exon11	c.C1424T	p.T475M	AGAGCACGCAATG	.	121	5	101	0	C|0.999;T|0.001	0	0	0	0	0	T	11114170	C	T	11114170	3	4	43	1	0	0	0	0	1	0	0	0	3506	536	19	1	1466	1	CLEC16A	16	11114170	Missense_Mutation	SNP	C	TCGA-OR-A5L3-01A-11D-A29I-10		11114170	79240583	64	9212										
NOMO1	23420	broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr16	14988885	14988885	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0222222222222222	2	1	0.500667913438418	1.05696559503666	0.328023805356205	1	1	0	ctgaacaggacatcgcacaaGgatcctacattgccctgcca	8	14	0	1	novel		TCGA-OR-A5L3-01A-11D-A29I-10	TCGA-OR-A5L3-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	20de8d93-d3ca-4127-a242-4b4883523118	4a788687-ee2a-41b7-809d-410076aa453b	.	NOMO1-45	NM_014287	exon30	c.G3475T	p.G1159X	GCACAAGGATCCT	.	2445	348	2184	4	.	182	181	1	0	0	T	14988885	G	T	14988885	4	4	43	1	0	0	0	0	0	1	0	0	10560	1001	35	3	3593	3	NOMO1	16	14988885	Nonsense_Mutation	SNP	G	TCGA-OR-A5L3-01A-11D-A29I-10	3874715	14988885	75365868	65	9213										
MYH11	4629	hgsc.bcm.edu;ucsc.edu	37	chr16	15809040	15809040	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0222222222222222	2	1	0.500667913438418	1.05696559503666	0.328023805356205	1	1	0	cctgctccttgtactgctcgGccatcttgcgctcgtcctcc	8	18	1	0	novel		TCGA-OR-A5L3-01A-11D-A29I-10	TCGA-OR-A5L3-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	20de8d93-d3ca-4127-a242-4b4883523118	4a788687-ee2a-41b7-809d-410076aa453b	.	MYH11-666	NM_001040114	exon40	c.C5615A	p.A1872D	TGCTCGGCCATCT	.	40	4	39	0	.	0	0	0	0	0	T	15809040	G	T	15809040	3	4	43	1	0	0	0	0	1	0	0	0	10059	1203	42	3	371	3	MYH11	16	15809040	Missense_Mutation	SNP	G	TCGA-OR-A5L3-01A-11D-A29I-10	820155	15809040	74545713	66	9214										
IRX3	79191	hgsc.bcm.edu	37	chr16	54318528	54318528	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0222222222222222	2	1	0.500667913438418	1.05696559503666	0.328023805356205	1	1	0	ccagcagggagagcgggtgcAggcgggggccgggcggtggg	25	9	0	1	rs1450355		TCGA-OR-A5L3-01A-11D-A29I-10	TCGA-OR-A5L3-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	20de8d93-d3ca-4127-a242-4b4883523118	4a788687-ee2a-41b7-809d-410076aa453b	.	IRX3-90	NM_024336	exon2	c.T1265C	p.L422P	GGGTGCAGGCGGG	.	4	4	0	0	T|0.035;G|0.004	0	0	0	0	0	G	54318528	A	G	54318528	3	3	43	1	0	0	0	0	1	0	0	0	7866	188	7	4	252	4	IRX3	16	54318528	Missense_Mutation	SNP	A	TCGA-OR-A5L3-01A-11D-A29I-10	38509488	54318528	36036225	67	9215										
CDT1	81620	bcgsc.ca	37	chr16	88872511	88872511	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0222222222222222	2	1	0.500667913438418	1.05696559503666	0.328023805356205	1	1	0	agccagaagctggtggagcaTgtcaaggagcaccacaaggt	14	9	1	1	rs510862	byfrequency	TCGA-OR-A5L3-01A-11D-A29I-10	TCGA-OR-A5L3-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	20de8d93-d3ca-4127-a242-4b4883523118	4a788687-ee2a-41b7-809d-410076aa453b	.	CDT1-227	NM_030928	exon6	c.T915C	p.H305H	GGAGCATGTCAAG	.	88	6	76	0	T|0.145;C|0.855	0	0	0	0	0	C	88872511	T	C	88872511	2	2	43	1	0	0	0	0	0	0	0	1	3186	1461	51	4		4	CDT1	16	88872511	Silent	SNP	T	TCGA-OR-A5L3-01A-11D-A29I-10	34553983	88872511	1482242	68	9216										
C16orf3	750	bcgsc.ca	37	chr16	90095596	90095597	+	Missense_Mutation	DNP	AT	AT	GC													0.0222222222222222	2	1	0.500667913438418	1.05696559503666	0.328023805356205	1	1	0	ggcagcttacggggcaggctAtggggcagcctacggggcag					novel		TCGA-OR-A5L3-01A-11D-A29I-10	TCGA-OR-A5L3-10A-01D-A29L-10	AT	AT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	20de8d93-d3ca-4127-a242-4b4883523118	4a788687-ee2a-41b7-809d-410076aa453b	.	C16orf3-90	NM_001214	exon1	c.A154G	p.I52A	AGGCTATGGGGCA	.	60	0	27	0	T|0.361;C|0.639	0	0	0	0	0	GC	90095597	AT	GC	90095596	3	3	43	1	0	0	0	0	1	0	0	0	1816	449	16	4	202	4	C16orf3	16	90095596	Missense_Mutation	DNP	AT	TCGA-OR-A5L3-01A-11D-A29I-10	1223085	90095596	259157	69	9217										
FLCN	201163	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	17131266	17131266	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0222222222222222	2	1	0.500667913438418	1.05696559503666	0.328023805356205	1	1	0	acgctggccccctctgcgggGctgtgcgcacgcatccgact	13	17	1	0	novel		TCGA-OR-A5L3-01A-11D-A29I-10	TCGA-OR-A5L3-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	20de8d93-d3ca-4127-a242-4b4883523118	4a788687-ee2a-41b7-809d-410076aa453b	.	FLCN-1292	NM_144997	exon4	c.C186A	p.S62R	TGCGGGGCTGTGC	.	196	69	123	0	.	0	0	0	0	0	T	17131266	G	T	17131266	3	4	43	1	0	0	0	0	1	0	0	0	5940	1194	42	3	1755	3	FLCN	17	17131266	Missense_Mutation	SNP	G	TCGA-OR-A5L3-01A-11D-A29I-10		17131266	64063944	70	9218										
ULK2	9706	hgsc.bcm.edu	37	chr17	19770717	19770718	+	In_Frame_Ins	INS	-	-	CCA													0.0222222222222222	2	1	0.500667913438418	1.05696559503666	0.328023805356205	1	1	0	cttgctgtactcgaagtcacINSccaccacctccatggccgcg					novel		TCGA-OR-A5L3-01A-11D-A29I-10	TCGA-OR-A5L3-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	20de8d93-d3ca-4127-a242-4b4883523118	4a788687-ee2a-41b7-809d-410076aa453b	.	ULK2-334	NM_014683	exon1	c.14_15insTGG	p.G5delinsVG	AAGTCACCCACCA	.	43	13	8	2	.	0	0	0	0	0	CCA	19770718	-	CCA	19770717	7	5	43	1	0	1	1	0	0	0	0	0	17014	507	18	0	3204	0	ULK2	17	19770717	In_Frame_Ins	INS	-	TCGA-OR-A5L3-01A-11D-A29I-10	2639451	19770717	61424493	71	9219										
KRTAP4-5	85289	hgsc.bcm.edu	37	chr17	39305774	39305775	+	In_Frame_Ins	INS	-	-	TGGCAGCAGCTGGGG													0.0222222222222222	2	1	0.500667913438418	1.05696559503666	0.328023805356205	1	1	0	tggtcctgcagcaggtggtcINStggcagcagcaggggcggca					novel		TCGA-OR-A5L3-01A-11D-A29I-10	TCGA-OR-A5L3-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	20de8d93-d3ca-4127-a242-4b4883523118	4a788687-ee2a-41b7-809d-410076aa453b	.	KRTAP4-5-90	NM_033188	exon1	c.246_247insCCCCAGCTGCTGCCA	p.Q82delinsHPSCCQ	GGTGGTCTGGCAG	.	75	59	11	0	.	0	0	0	0	0	TGGCAGCAGCTGGGG	39305775	-	TGGCAGCAGCTGGGG	39305774	7	5	43	1	0	1	1	0	0	0	0	0	8576	912	32	0	303	0	KRTAP4-5	17	39305774	In_Frame_Ins	INS	-	TCGA-OR-A5L3-01A-11D-A29I-10	19535057	39305774	41889436	72	9220										
EIF1	10209	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	39847059	39847059	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0222222222222222	2	1	0.500667913438418	1.05696559503666	0.328023805356205	1	1	0	actggctaaggacgatcagcTgaaggttcatgggttttaag	13	6	2	1	novel		TCGA-OR-A5L3-01A-11D-A29I-10	TCGA-OR-A5L3-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	20de8d93-d3ca-4127-a242-4b4883523118	4a788687-ee2a-41b7-809d-410076aa453b	.	EIF1-90	NM_005801	exon4	c.T323C	p.L108P	ATCAGCTGAAGGT	.	126	48	120	0	.	1395	734	661	0	0	C	39847059	T	C	39847059	3	2	43	1	0	0	0	0	1	0	0	0	5001	1580	55	4	337	4	EIF1	17	39847059	Missense_Mutation	SNP	T	TCGA-OR-A5L3-01A-11D-A29I-10	541285	39847059	41348151	73	9221										
SERPINB12	89777	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr18	61223496	61223496	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0222222222222222	2	1	0.500667913438418	1.05696559503666	0.328023805356205	1	1	0	atttttctctcccctgagccTctcagctgcccttggtatgg	8	14	2	1	novel		TCGA-OR-A5L3-01A-11D-A29I-10	TCGA-OR-A5L3-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	20de8d93-d3ca-4127-a242-4b4883523118	4a788687-ee2a-41b7-809d-410076aa453b	.	SERPINB12-227	NM_080474	exon1	c.T104C	p.L35P	TGAGCCTCTCAGC	.	136	51	112	0	.	0	0	0	0	0	C	61223496	T	C	61223496	3	2	43	1	0	0	0	0	1	0	0	0	14134	1551	54	4	106	4	SERPINB12	18	61223496	Missense_Mutation	SNP	T	TCGA-OR-A5L3-01A-11D-A29I-10		61223496	16853752	74	9222										
CELF5	60680	bcgsc.ca	37	chr19	3224896	3224896	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0222222222222222	2	1	0.500667913438418	1.05696559503666	0.328023805356205	1	1	0	ctcttcgtgggccagatcccGcggcacctggacgagaagga	14	13	1	2	rs17852497	byfrequency	TCGA-OR-A5L3-01A-11D-A29I-10	TCGA-OR-A5L3-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	20de8d93-d3ca-4127-a242-4b4883523118	4a788687-ee2a-41b7-809d-410076aa453b	.	CELF5-92	NM_021938	exon1	c.G159C	p.P53P	GATCCCGCGGCAC	.	306	11	159	2	G|0.815;C|0.185	0	0	0	0	0	C	3224896	G	C	3224896	2	2	43	1	0	0	0	0	0	0	0	1	3225	1074	38	2		2	CELF5	19	3224896	Silent	SNP	G	TCGA-OR-A5L3-01A-11D-A29I-10		3224896	55904087	75	9223										
C3	718	bcgsc.ca	37	chr19	6677989	6677989	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0222222222222222	2	1	0.500667913438418	1.05696559503666	0.328023805356205	1	1	0	tcttggcattcgtcctcctcGggccagtgctccacccaagt	9	16	1	0	rs17030	bycluster;byfrequency;by1000genomes	TCGA-OR-A5L3-01A-11D-A29I-10	TCGA-OR-A5L3-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	20de8d93-d3ca-4127-a242-4b4883523118	4a788687-ee2a-41b7-809d-410076aa453b	.	C3-95	NM_000064	exon41	c.C4896T	p.P1632P	CTCCTCGGGCCAG	.	117	5	104	1	G|0.494;A|0.506	504	504	0	0	0	A	6677989	G	A	6677989	2	1	43	1	0	0	0	0	0	0	0	1	2210	1103	39	1		1	C3	19	6677989	Silent	SNP	G	TCGA-OR-A5L3-01A-11D-A29I-10	3453093	6677989	52450994	76	9224										
UNC13A	23025	bcgsc.ca	37	chr19	17741047	17741047	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0222222222222222	2	1	0.500667913438418	1.05696559503666	0.328023805356205	1	1	0	ctctggttgagttgggagaaAacatccaccacggagcagga	13	9	1	2	rs10413821	byfrequency	TCGA-OR-A5L3-01A-11D-A29I-10	TCGA-OR-A5L3-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	20de8d93-d3ca-4127-a242-4b4883523118	4a788687-ee2a-41b7-809d-410076aa453b	.	UNC13A-25	NM_001080421	exon29	c.T3576C	p.V1192V	GGAGAAAACATCC	.	105	5	135	0	A|0.571;G|0.429	0	0	0	0	0	G	17741047	A	G	17741047	2	3	43	1	0	0	0	0	0	0	0	1	17022	1	1	4		4	UNC13A	19	17741047	Silent	SNP	A	TCGA-OR-A5L3-01A-11D-A29I-10	11063058	17741047	41387936	77	9225										
DMKN	93099	hgsc.bcm.edu	37	chr19	36002386	36002386	+	Missense_Mutation	SNP	C	C	T													0.0222222222222222	2	1	0.500667913438418	1.05696559503666	0.328023805356205	1	1	0	tgccaccactgctgccgccaCtgctgccgccactgctgctg					rs117522133	byfrequency	TCGA-OR-A5L3-01A-11D-A29I-10	TCGA-OR-A5L3-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	20de8d93-d3ca-4127-a242-4b4883523118	4a788687-ee2a-41b7-809d-410076aa453b	.	DMKN-155	NM_001126058	exon5	c.G845A	p.S282N	CCGCCACTGCTGC	.	66	21	72	0	C|0.945;T|0.055	0	0	0	0	0	T	36002386	C	T	36002386	3	4	43	1	0	0	0	0	1	0	0	0	4593	565	20	3	950	3	DMKN	19	36002386	Missense_Mutation	SNP	C	TCGA-OR-A5L3-01A-11D-A29I-10	18261339	36002386	23126597	78	9226	108	2								
DMKN	93099	hgsc.bcm.edu	37	chr19	36002389	36002389	+	Missense_Mutation	SNP	C	C	T													0.0222222222222222	2	1	0.500667913438418	1.05696559503666	0.328023805356205	1	1	0	caccactgctgccgccactgCtgccgccactgctgctgcca					rs142519211	byfrequency	TCGA-OR-A5L3-01A-11D-A29I-10	TCGA-OR-A5L3-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	20de8d93-d3ca-4127-a242-4b4883523118	4a788687-ee2a-41b7-809d-410076aa453b	.	DMKN-155	NM_001126058	exon5	c.G842A	p.S281N	CCACTGCTGCCGC	.	63	18	72	0	C|0.957;T|0.043	0	0	0	0	0	T	36002389	C	T	36002389	3	4	43	1	0	0	0	0	1	0	0	0	4593	797	28	3	953	3	DMKN	19	36002389	Missense_Mutation	SNP	C	TCGA-OR-A5L3-01A-11D-A29I-10	3	36002389	23126594	79	9227	108	2								
SPTBN4	57731	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	41063159	41063159	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0222222222222222	2	1	0.500667913438418	1.05696559503666	0.328023805356205	1	1	0	cgggagcttcataagttcttCagtgacgcccgagagcttca	11	11	4	2	novel		TCGA-OR-A5L3-01A-11D-A29I-10	TCGA-OR-A5L3-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	20de8d93-d3ca-4127-a242-4b4883523118	4a788687-ee2a-41b7-809d-410076aa453b	.	SPTBN4-94	NM_020971	exon26	c.C5520T	p.F1840F	GTTCTTCAGTGAC	.	135	41	105	0	.	0	0	0	0	0	T	41063159	C	T	41063159	2	4	43	1	0	0	0	0	0	0	0	1	15158	825	29	3		3	SPTBN4	19	41063159	Silent	SNP	C	TCGA-OR-A5L3-01A-11D-A29I-10	5060770	41063159	18065824	80	9228										
TPRX1	284355	ucsc.edu	37	chr19	48305646	48305646	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0222222222222222	2	1	0.500667913438418	1.05696559503666	0.328023805356205	1	1	0	tgggcctgagattgggcctgGgatcgggcctgggatcggga	20	8	0	1	rs112842028		TCGA-OR-A5L3-01A-11D-A29I-10	TCGA-OR-A5L3-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	20de8d93-d3ca-4127-a242-4b4883523118	4a788687-ee2a-41b7-809d-410076aa453b	.	TPRX1-90	NM_198479	exon2	c.C622T	p.P208S	GGCCTGGGATCGG	.	38	6	45	0	G|0.500;A|0.500	0	0	0	0	0	A	48305646	G	A	48305646	3	1	43	1	0	0	0	0	1	0	0	0	16460	1232	43	3	617	3	TPRX1	19	48305646	Missense_Mutation	SNP	G	TCGA-OR-A5L3-01A-11D-A29I-10	7242487	48305646	10823337	81	9229										
ZCCHC3	85364	hgsc.bcm.edu	37	chr20	278515	278515	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0222222222222222	2	1	0.500667913438418	1.05696559503666	0.328023805356205	1	1	0	ccaccggctggccgcggggaTccgaagggccgtcggagaga	18	13	0	1	rs2223665	byfrequency	TCGA-OR-A5L3-01A-11D-A29I-10	TCGA-OR-A5L3-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	20de8d93-d3ca-4127-a242-4b4883523118	4a788687-ee2a-41b7-809d-410076aa453b	.	ZCCHC3-90	NM_033089	exon1	c.T288C	p.D96D	CGGGGATCCGAAG	.	5	5	0	0	T|0.454;C|0.546	0	0	0	0	0	C	278515	T	C	278515	2	2	43	1	0	0	0	0	0	0	0	1	17626	1432	50	4		4	ZCCHC3	20	278515	Silent	SNP	T	TCGA-OR-A5L3-01A-11D-A29I-10		278515	62747005	82	9230										
TRIB3	57761	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr20	368653	368653	+	Splice_Site	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0222222222222222	2	1	0.500667913438418	1.05696559503666	0.328023805356205	1	1	0	gcttttctctcctttttaccAgatgcgagccacccctctgg	7	15	2	1	novel		TCGA-OR-A5L3-01A-11D-A29I-10	TCGA-OR-A5L3-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	20de8d93-d3ca-4127-a242-4b4883523118	4a788687-ee2a-41b7-809d-410076aa453b	.	TRIB3-359	.	.	.	.	TTTACCAGATGCG	.	46	17	40	0	.	4	0	4	0	0	G	368653	A	G	368653	5	3	43	1	0	0	0	0	0	0	1	0	16522	202	7	4	1	4	TRIB3	20	368653	Splice_Site	SNP	A	TCGA-OR-A5L3-01A-11D-A29I-10	90138	368653	62656867	83	9231										
CPXM1	56265	bcgsc.ca	37	chr20	2776975	2776975	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0222222222222222	2	1	0.500667913438418	1.05696559503666	0.328023805356205	1	1	0	cagagagcagccgggtcaccCgtgggttccctcgcaggaac	14	14	1	1	rs41310169	byfrequency	TCGA-OR-A5L3-01A-11D-A29I-10	TCGA-OR-A5L3-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	20de8d93-d3ca-4127-a242-4b4883523118	4a788687-ee2a-41b7-809d-410076aa453b	.	CPXM1-94	NM_001184699	exon9	c.G1160A	p.R387Q	GTCACCCGTGGGT	.	63	4	68	0	C|0.993;T|0.007	0	0	0	0	0	T	2776975	C	T	2776975	3	4	43	1	0	0	0	0	1	0	0	0	3843	652	23	1	1068	1	CPXM1	20	2776975	Missense_Mutation	SNP	C	TCGA-OR-A5L3-01A-11D-A29I-10	2408322	2776975	60248545	84	9232										
R3HDML	140902	bcgsc.ca	37	chr20	42966025	42966025	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0222222222222222	2	1	0.500667913438418	1.05696559503666	0.328023805356205	1	1	0	cacaaccacatccgggccagTgtgtacccacctgccgccaa	8	18	0	0	rs1884612	byfrequency	TCGA-OR-A5L3-01A-11D-A29I-10	TCGA-OR-A5L3-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	20de8d93-d3ca-4127-a242-4b4883523118	4a788687-ee2a-41b7-809d-410076aa453b	.	R3HDML-90	NM_178491	exon1	c.T228C	p.S76S	GGCCAGTGTGTAC	.	195	8	129	0	T|0.730;C|0.270	0	0	0	0	0	C	42966025	T	C	42966025	2	2	43	1	0	0	0	0	0	0	0	1	12924	1693	59	4		4	R3HDML	20	42966025	Silent	SNP	T	TCGA-OR-A5L3-01A-11D-A29I-10	40189050	42966025	20059495	85	9233										
CLIC6	54102	hgsc.bcm.edu	37	chr21	36042579	36042579	+	Missense_Mutation	SNP	C	C	G													0.0222222222222222	2	1	0.500667913438418	1.05696559503666	0.328023805356205	1	1	0	gggtctcgggtgagccgcagCaatcgggggacggcagcctc					rs13049028	byfrequency	TCGA-OR-A5L3-01A-11D-A29I-10	TCGA-OR-A5L3-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	20de8d93-d3ca-4127-a242-4b4883523118	4a788687-ee2a-41b7-809d-410076aa453b	.	CLIC6-91	NM_053277	exon1	c.C892G	p.Q298E	CCGCAGCAATCGG	.	9	8	0	0	C|0.802;G|0.198	0	0	0	0	0	G	36042579	C	G	36042579	3	3	43	1	0	0	0	0	1	0	0	0	3536	711	25	3	894	3	CLIC6	21	36042579	Missense_Mutation	SNP	C	TCGA-OR-A5L3-01A-11D-A29I-10		36042579	12087316	86	9234	109	2								
CLIC6	54102	hgsc.bcm.edu	37	chr21	36042584	36042584	+	Silent	SNP	G	G	A													0.0222222222222222	2	1	0.500667913438418	1.05696559503666	0.328023805356205	1	1	0	tcgggtgagccgcagcaatcGggggacggcagcctctcgcc					rs13049239	byfrequency	TCGA-OR-A5L3-01A-11D-A29I-10	TCGA-OR-A5L3-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	20de8d93-d3ca-4127-a242-4b4883523118	4a788687-ee2a-41b7-809d-410076aa453b	.	CLIC6-91	NM_053277	exon1	c.G897A	p.S299S	GCAATCGGGGGAC	.	9	8	0	0	G|0.803;A|0.197	0	0	0	0	0	A	36042584	G	A	36042584	2	1	43	1	0	0	0	0	0	0	0	1	3536	1103	39	1		1	CLIC6	21	36042584	Silent	SNP	G	TCGA-OR-A5L3-01A-11D-A29I-10	5	36042584	12087311	87	9235	109	2								
KRTAP10-7	386675	broad.mit.edu	37	chr21	46020669	46020670	+	Splice_Site	DEL	AG	AG	-													0.0222222222222222	2	1	0.500667913438418	1.05696559503666	0.328023805356205	1	1	0	agcccccctgctgcgcccccAgctgctgcgccccggccccc					novel		TCGA-OR-A5L3-01A-11D-A29I-10	TCGA-OR-A5L3-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	20de8d93-d3ca-4127-a242-4b4883523118	4a788687-ee2a-41b7-809d-410076aa453b	.	.	.	.	.	.	GCCCCCAGCTGCT	.	90	8	17	0	.	0	0	0	0	0	-	46020670	AG	-	46020669	8	5	43	1	0	1	0	1	0	0	1	0	8535	202	7	0	139	0	KRTAP10-7	21	46020669	Splice_Site	DEL	AG	TCGA-OR-A5L3-01A-11D-A29I-10	9978085	46020669	2109226	88	9236										
LSS	4047	bcgsc.ca	37	chr21	47614443	47614443	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0222222222222222	2	1	0.500667913438418	1.05696559503666	0.328023805356205	1	1	0	atcatggcccagcatgtgttAtggatctgggactgggcact	13	9	2	0	rs2254522	byfrequency	TCGA-OR-A5L3-01A-11D-A29I-10	TCGA-OR-A5L3-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	20de8d93-d3ca-4127-a242-4b4883523118	4a788687-ee2a-41b7-809d-410076aa453b	.	LSS-90	NM_001001438	exon20	c.T1950C	p.H650H	TGTGTTATGGATC	.	106	5	106	0	A|0.712;C|0.002	18	18	0	0	0	G	47614443	A	G	47614443	2	3	43	1	0	0	0	0	0	0	0	1	9092	446	16	4		4	LSS	21	47614443	Silent	SNP	A	TCGA-OR-A5L3-01A-11D-A29I-10	1593774	47614443	515452	89	9237										
C21orf58	54058	hgsc.bcm.edu;broad.mit.edu	37	chr21	47721985	47721986	+	In_Frame_Ins	INS	-	-	TGGTGG													0.0222222222222222	2	1	0.500667913438418	1.05696559503666	0.328023805356205	1	1	0	ccccaggtggccacacagcaINStggtggtggtggtggtggtg					rs71318063	bycluster;by1000genomes;alternate_allele	TCGA-OR-A5L3-01A-11D-A29I-10	TCGA-OR-A5L3-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	20de8d93-d3ca-4127-a242-4b4883523118	4a788687-ee2a-41b7-809d-410076aa453b	.	C21orf58-91	NM_058180	exon8	c.897_898insCCACCA	p.H299delinsHHH	CACAGCATGGTGG	.	57	8	6	0	-|0.500;TGG|0.500	0	0	0	0	0	TGGTGG	47721986	-	TGGTGG	47721985	7	5	43	1	0	1	1	0	0	0	0	0	2135	214	8	0	75	0	C21orf58	21	47721985	In_Frame_Ins	INS	-	TCGA-OR-A5L3-01A-11D-A29I-10	107542	47721985	407910	90	9238										
CLDN5	7122	hgsc.bcm.edu	37	chr22	19511953	19511953	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0222222222222222	2	1	0.500667913438418	1.05696559503666	0.328023805356205	1	1	0	cagctcctgccggggggtacCctctttgaaggttcgggggc	16	12	1	1	novel		TCGA-OR-A5L3-01A-11D-A29I-10	TCGA-OR-A5L3-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	20de8d93-d3ca-4127-a242-4b4883523118	4a788687-ee2a-41b7-809d-410076aa453b	.	CLDN5-492	NM_001130861	exon1	c.G81T	p.R27S	GGGTACCCTCTTT	.	24	11	0	0	.	0	0	0	0	0	A	19511953	C	A	19511953	3	1	43	1	0	0	0	0	1	0	0	0	3494	622	22	3	834	3	CLDN5	22	19511953	Missense_Mutation	SNP	C	TCGA-OR-A5L3-01A-11D-A29I-10		19511953	31792613	91	9239										
SCARF2	91179	hgsc.bcm.edu	37	chr22	20780091	20780091	+	Silent	SNP	C	C	G													0.0222222222222222	2	1	0.500667913438418	1.05696559503666	0.328023805356205	1	1	0	gtcgcctcctcgggcagcccCggggggcgcggcgttgggtc					rs77189880	bycluster;byfrequency;by1000genomes	TCGA-OR-A5L3-01A-11D-A29I-10	TCGA-OR-A5L3-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	20de8d93-d3ca-4127-a242-4b4883523118	4a788687-ee2a-41b7-809d-410076aa453b	.	SCARF2-341	NM_153334	exon11	c.G2187C	p.P729P	CAGCCCCGGGGGG	.	4	4	0	0	C|0.138;G|0.862	0	0	0	0	0	G	20780091	C	G	20780091	2	3	43	1	0	0	0	0	0	0	0	1	13919	639	23	2		2	SCARF2	22	20780091	Silent	SNP	C	TCGA-OR-A5L3-01A-11D-A29I-10	1268138	20780091	30524475	92	9240	110	2								
SCARF2	91179	hgsc.bcm.edu	37	chr22	20780097	20780097	+	Silent	SNP	G	G	C													0.0222222222222222	2	1	0.500667913438418	1.05696559503666	0.328023805356205	1	1	0	tcctcgggcagccccgggggGcgcggcgttgggtcgcgggt					rs759609	bycluster;byfrequency;by1000genomes	TCGA-OR-A5L3-01A-11D-A29I-10	TCGA-OR-A5L3-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	20de8d93-d3ca-4127-a242-4b4883523118	4a788687-ee2a-41b7-809d-410076aa453b	.	SCARF2-341	NM_153334	exon11	c.C2181G	p.R727R	CGGGGGGCGCGGC	.	4	4	0	0	G|0.826;C|0.174	0	0	0	0	0	C	20780097	G	C	20780097	2	2	43	1	0	0	0	0	0	0	0	1	13919	1190	42	3		3	SCARF2	22	20780097	Silent	SNP	G	TCGA-OR-A5L3-01A-11D-A29I-10	6	20780097	30524469	93	9241	110	2								
SERPINA7	6906	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	105277575	105277575	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0222222222222222	2	1	0.500667913438418	1.05696559503666	0.328023805356205	1	1	0	atcaacaacatgaaagatctAtcaatttggataatagggtg	8	5	3	2	novel		TCGA-OR-A5L3-01A-11D-A29I-10	TCGA-OR-A5L3-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	20de8d93-d3ca-4127-a242-4b4883523118	4a788687-ee2a-41b7-809d-410076aa453b	.	SERPINA7-226	NM_000354	exon5	c.T1164A	p.D388E	AGATCTATCAATT	.	230	99	233	0	.	0	0	0	0	0	T	105277575	A	T	105277575	3	4	43	1	0	0	0	0	1	0	0	0	14129	446	16	5	87	5	SERPINA7	23	105277575	Missense_Mutation	SNP	A	TCGA-OR-A5L3-01A-11D-A29I-10		105277575	49992985	94	9242										
AKR7L	246181	bcgsc.ca	37	chr1	19595159	19595159	+	RNA	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.075	6	0.390483045913136	2.10712111990262	1.81446540880503	2.17735849056604	0.131221719457014	0.738095238095239	0	gcctgcagggccttctccacCagggcaatgccctcgaagtg	12	15	1	0	rs116631486	byfrequency	TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	.	AKR7L-90	.	.	.	.	CTCCACCAGGGCA	.	133	5	161	2	C|0.972;T|0.028	0	0	0	0	0	T	19595159	C	T	19595159	1	4	44	0	1	0	0	0	0	0	0	0	477	594	21	3		3	AKR7L	1	19595159	RNA	SNP	C	TCGA-OR-A5L4-01A-11D-A29I-10		19595159	229655462	1	9243										
GMEB1	10691	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	29040851	29040851	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.075	6	0.390483045913136	2.10712111990262	1.81446540880503	2.17735849056604	0.131221719457014	0.738095238095239	0	cagtggccaccctcagccagGgctccagtcctgtgactgtc	11	16	1	1	novel		TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	.	GMEB1-90	NM_006582	exon10	c.G1288A	p.G430S	AGCCAGGGCTCCA	.	174	131	259	2	.	4	0	4	0	0	A	29040851	G	A	29040851	3	1	44	1	0	0	0	0	1	0	0	0	6507	1232	43	3	1322	3	GMEB1	1	29040851	Missense_Mutation	SNP	G	TCGA-OR-A5L4-01A-11D-A29I-10	9445692	29040851	220209770	2	9244										
COL16A1	1307	bcgsc.ca	37	chr1	32165495	32165495	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.075	6	0.390483045913136	2.10712111990262	1.81446540880503	2.17735849056604	0.131221719457014	0.738095238095239	0	ggatcttcttgatggcagacGtcttcatgaggctgagtcgg	14	8	4	4	rs2228552	byfrequency	TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	.	COL16A1-98	NM_001856	exon4	c.C185A	p.T62K	GCAGACGTCTTCA	.	69	5	132	1	G|0.551;T|0.449	2	2	0	0	0	T	32165495	G	T	32165495	3	4	44	1	0	0	0	0	1	0	0	0	3679	1145	40	2	4901	2	COL16A1	1	32165495	Missense_Mutation	SNP	G	TCGA-OR-A5L4-01A-11D-A29I-10	3124644	32165495	217085126	3	9245										
INPP5B	3633	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	38397696	38397696	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.075	6	0.390483045913136	2.10712111990262	1.81446540880503	2.17735849056604	0.131221719457014	0.738095238095239	0	ataccgagacagccacaggaAttcaggatcccgggtcgcag	12	12	1	1	novel		TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	.	INPP5B-227	NM_005540	exon7	c.T421A	p.F141I	ACAGGAATTCAGG	.	20	9	29	0	.	0	0	0	0	0	T	38397696	A	T	38397696	3	4	44	1	0	0	0	0	1	0	0	0	7776	101	4	5	2392	5	INPP5B	1	38397696	Missense_Mutation	SNP	A	TCGA-OR-A5L4-01A-11D-A29I-10	6232201	38397696	210852925	4	9246										
RSBN1	54665	hgsc.bcm.edu	37	chr1	114354654	114354654	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.075	6	0.390483045913136	2.10712111990262	1.81446540880503	2.17735849056604	0.131221719457014	0.738095238095239	0	acagttggggctgcattcgtTggcggcagcggcccaggatg	17	10	0	0	rs3195954	byfrequency	TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	.	RSBN1-91	NM_018364	exon1	c.A381G	p.P127P	ATTCGTTGGCGGC	.	11	10	0	0	T|0.861;C|0.139	2	0	2	0	0	C	114354654	T	C	114354654	2	2	44	1	0	0	0	0	0	0	0	1	13731	1799	63	4		4	RSBN1	1	114354654	Silent	SNP	T	TCGA-OR-A5L4-01A-11D-A29I-10	75956958	114354654	134895967	5	9247										
IGSF3	3321	ucsc.edu;bcgsc.ca	37	chr1	117142613	117142613	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.075	6	0.390483045913136	2.10712111990262	1.81446540880503	2.17735849056604	0.131221719457014	0.738095238095239	0	tggaggtcctctccgccagtCgcgtccaggtgttgttgtag	14	11	1	0	rs76151115	byfrequency	TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	.	IGSF3-92	NM_001542	exon8	c.G2039A	p.R680Q	GCCAGTCGCGTCC	.	94	21	102	4	C|0.990;T|0.010	1	1	0	0	0	T	117142613	C	T	117142613	3	4	44	1	0	0	0	0	1	0	0	0	7622	884	31	1	1625	1	IGSF3	1	117142613	Missense_Mutation	SNP	C	TCGA-OR-A5L4-01A-11D-A29I-10	2787959	117142613	132108008	6	9248										
NLRP3	114548	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	247599417	247599417	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.075	6	0.390483045913136	2.10712111990262	1.81446540880503	2.17735849056604	0.131221719457014	0.738095238095239	0	tatgtgaaaaagccaagaatCcacagtgtaacctgcagaaa	8	8	0	3	novel		TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	.	NLRP3-674	NM_004895	exon6	c.C2644G	p.P882A	AAGAATCCACAGT	.	103	45	106	0	.	0	0	0	0	0	G	247599417	C	G	247599417	3	3	44	1	0	0	0	0	1	0	0	0	10507	855	30	3	2666	3	NLRP3	1	247599417	Missense_Mutation	SNP	C	TCGA-OR-A5L4-01A-11D-A29I-10	130456804	247599417	1651204	7	9249										
CMPK2	129607	hgsc.bcm.edu	37	chr2	7005369	7005369	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.075	6	0.390483045913136	2.10712111990262	1.81446540880503	2.17735849056604	0.131221719457014	0.738095238095239	0	tgcgggcgtggtgcctcctgAcaggcgcccagcagctcgag	16	14	0	1	rs11678810		TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	.	CMPK2-68	NM_001256478	exon1	c.T459C	p.C153C	CTCCTGACAGGCG	.	7	7	0	0	A|0.003;G|0.997	0	0	0	0	0	G	7005369	A	G	7005369	2	3	44	1	0	0	0	0	0	0	0	1	3587	273	10	4		4	CMPK2	2	7005369	Silent	SNP	A	TCGA-OR-A5L4-01A-11D-A29I-10		7005369	236194004	8	9250										
KRTCAP3	200634	hgsc.bcm.edu;broad.mit.edu	37	chr2	27665608	27665609	+	Frame_Shift_Del	DEL	TC	TC	-													0.075	6	0.390483045913136	2.10712111990262	1.81446540880503	2.17735849056604	0.131221719457014	0.738095238095239	0	gtacaccgtagccaatgtcaTctctgtcggctcggggctgc					novel		TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10	TC	TC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	.	KRTCAP3-90	NM_173853	exon2	c.191_192del	p.64_64del	ATGTCATCTCTGT	.	19	16	4	0	.	0	0	0	0	0	-	27665609	TC	-	27665608	7	5	44	1	0	1	0	1	0	0	0	0	8601	1435	50	0	197	0	KRTCAP3	2	27665608	Frame_Shift_Del	DEL	TC	TCGA-OR-A5L4-01A-11D-A29I-10	20660239	27665608	215533765	9	9251										
TTC7A	57217	bcgsc.ca	37	chr2	47277186	47277186	+	Splice_Site	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.075	6	0.390483045913136	2.10712111990262	1.81446540880503	2.17735849056604	0.131221719457014	0.738095238095239	0	tgcccatgatgcagactctgGtaagaacgagctccttgggc	12	11	1	3	novel		TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	.	TTC7A-136	NM_020458	exon17	c.2017+1G>T	.	ACTCTGGTAAGAA	.	71	5	97	0	.	1	1	0	0	0	T	47277186	G	T	47277186	5	4	44	1	0	0	0	0	0	0	1	0	16750	1275	44	3	2084	3	TTC7A	2	47277186	Splice_Site	SNP	G	TCGA-OR-A5L4-01A-11D-A29I-10	19611578	47277186	195922187	10	9252										
CD8B	926	hgsc.bcm.edu	37	chr2	87088964	87088964	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.075	6	0.390483045913136	2.10712111990262	1.81446540880503	2.17735849056604	0.131221719457014	0.738095238095239	0	acctgtcagctgcgcggccaAgaggagccacagccgcggcc	14	16	1	1	rs62146888	byfrequency;by1000genomes	TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	.	CD8B-92	NM_004931	exon1	c.T25C	p.L9L	CGGCCAAGAGGAG	.	5	5	0	0	A|0.476;G|0.524	0	0	0	0	0	G	87088964	A	G	87088964	2	3	44	1	0	0	0	0	0	0	0	1	3051	69	3	4		4	CD8B	2	87088964	Silent	SNP	A	TCGA-OR-A5L4-01A-11D-A29I-10	39811778	87088964	156110409	11	9253										
INPP4A	3631	broad.mit.edu	37	chr2	99172244	99172244	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.075	6	0.390483045913136	2.10712111990262	1.81446540880503	2.17735849056604	0.131221719457014	0.738095238095239	0	gcccctccaccatgccctccActgcatgccatcctcatctg	5	21	2	0	rs2278206	byfrequency	TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	.	INPP4A-227	NM_001134224	exon17	c.A1810G	p.T604A	CCCTCCACTGCAT	.	100	3	108	0	A|0.729;G|0.271	2	2	0	0	0	G	99172244	A	G	99172244	3	3	44	1	0	0	0	0	1	0	0	0	7773	159	6	4	1868	4	INPP4A	2	99172244	Missense_Mutation	SNP	A	TCGA-OR-A5L4-01A-11D-A29I-10	12083280	99172244	144027129	12	9254										
MALL	7851	broad.mit.edu;bcgsc.ca	37	chr2	110873264	110873264	+	Splice_Site	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.075	6	0.390483045913136	2.10712111990262	1.81446540880503	2.17735849056604	0.131221719457014	0.738095238095239	0	ggtcgggggtgccgcactcaCcagctcgggcaggaagaagg	18	11	1	1	novel		TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	.	MALL-92	NM_005434	exon2	c.105+1G>A	.	CACTCACCAGCTC	.	146	116	54	2	.	0	0	0	0	0	T	110873264	C	T	110873264	5	4	44	1	0	0	0	0	0	0	1	0	9229	521	18	3	371	3	MALL	2	110873264	Splice_Site	SNP	C	TCGA-OR-A5L4-01A-11D-A29I-10	11701020	110873264	132326109	13	9255										
MARCO	8685	bcgsc.ca	37	chr2	119739063	119739063	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.075	6	0.390483045913136	2.10712111990262	1.81446540880503	2.17735849056604	0.131221719457014	0.738095238095239	0	ccaggggagtaaaggtgactTcgggaggccaggcccaccag	16	11	0	1	rs6761637	byfrequency	TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	.	MARCO-95	NM_006770	exon9	c.T845C	p.F282S	GTGACTTCGGGAG	.	53	4	57	0	T|0.873;C|0.127	0	0	0	0	0	C	119739063	T	C	119739063	3	2	44	1	0	0	0	0	1	0	0	0	9339	1783	62	4	879	4	MARCO	2	119739063	Missense_Mutation	SNP	T	TCGA-OR-A5L4-01A-11D-A29I-10	8865799	119739063	123460310	14	9256										
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	179512177	179512177	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.075	6	0.390483045913136	2.10712111990262	1.81446540880503	2.17735849056604	0.131221719457014	0.738095238095239	0	cttttctgggatgattttctCaggcactttgggcactttaa	9	8	2	1	novel		TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	.	TTN-636	NM_001267550	exon214	c.G40072T	p.E13358X	TTTTCTCAGGCAC	.	90	29	131	0	.	0	0	0	0	0	A	179512177	C	A	179512177	4	1	44	1	0	0	0	0	0	1	0	0	16773	841	29	3		3	TTN	2	179512177	Nonsense_Mutation	SNP	C	TCGA-OR-A5L4-01A-11D-A29I-10	59773114	179512177	63687196	15	9257										
KIF1A	547	hgsc.bcm.edu	37	chr2	241696843	241696843	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.075	6	0.390483045913136	2.10712111990262	1.81446540880503	2.17735849056604	0.131221719457014	0.738095238095239	0	aggtcctcctcctcctcatcCtcctcctcctcctcctcctc	2	24	1	0	novel		TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	.	KIF1A-91	NM_001244008	exon27	c.G2751T	p.E917D	CTCATCCTCCTCC	.	148	7	146	0	.	2	2	0	0	0	A	241696843	C	A	241696843	3	1	44	1	0	0	0	0	1	0	0	0	8304	696	24	3		3	KIF1A	2	241696843	Missense_Mutation	SNP	C	TCGA-OR-A5L4-01A-11D-A29I-10	62184666	241696843	1502530	16	9258										
DYNC1LI1	51143	bcgsc.ca	37	chr3	32578505	32578505	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.075	6	0.390483045913136	2.10712111990262	1.81446540880503	2.17735849056604	0.131221719457014	0.738095238095239	0	atgtatttaaaaggatacacTgtaaacaaaacttccggata	6	6	0	0	rs2303857	byfrequency	TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	.	DYNC1LI1-91	NM_016141	exon6	c.A830G	p.Q277R	ATACACTGTAAAC	.	99	7	154	2	T|0.935;C|0.065	0	0	0	0	0	C	32578505	T	C	32578505	3	2	44	1	0	0	0	0	1	0	0	0	4855	1580	55	4	773	4	DYNC1LI1	3	32578505	Missense_Mutation	SNP	T	TCGA-OR-A5L4-01A-11D-A29I-10		32578505	165443925	17	9259										
AMIGO3	386724	broad.mit.edu	37	chr3	49755730	49755730	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.075	6	0.390483045913136	2.10712111990262	1.81446540880503	2.17735849056604	0.131221719457014	0.738095238095239	0	gcacaaggcccacggcacagCccagcagtgtggtgaagcct	13	14	0	1	novel		TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	.	AMIGO3-91	NM_198722	exon1	c.G1169T	p.G390V	GCACAGCCCAGCA	.	120	13	47	3	.	0	0	0	0	0	A	49755730	C	A	49755730	3	1	44	1	0	0	0	0	1	0	0	0	577	739	26	3	349	3	AMIGO3	3	49755730	Missense_Mutation	SNP	C	TCGA-OR-A5L4-01A-11D-A29I-10	17177225	49755730	148266700	18	9260										
LRIG1	26018	hgsc.bcm.edu	37	chr3	66550756	66550756	+	Missense_Mutation	SNP	G	G	C													0.075	6	0.390483045913136	2.10712111990262	1.81446540880503	2.17735849056604	0.131221719457014	0.738095238095239	0	ggtcaccggctccagccgaaGcaaaagcagccagagaagga					rs1403625		TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	.	LRIG1-230	NM_015541	exon1	c.C76G	p.L26V	GCCGAAGCAAAAG	.	4	4	0	0	G|0.237;C|0.763	0	0	0	0	0	C	66550756	G	C	66550756	3	2	44	1	0	0	0	0	1	0	0	0	8971	971	34	3	3281	3	LRIG1	3	66550756	Missense_Mutation	SNP	G	TCGA-OR-A5L4-01A-11D-A29I-10	16795026	66550756	131471674	19	9261	111	2								
LRIG1	26018	hgsc.bcm.edu	37	chr3	66550762	66550762	+	Missense_Mutation	SNP	G	G	C													0.075	6	0.390483045913136	2.10712111990262	1.81446540880503	2.17735849056604	0.131221719457014	0.738095238095239	0	cggctccagccgaagcaaaaGcagccagagaaggagaaggc					rs1403626	byfrequency	TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	.	LRIG1-230	NM_015541	exon1	c.C70G	p.L24V	GCAAAAGCAGCCA	.	4	4	0	0	G|0.252;C|0.748	0	0	0	0	0	C	66550762	G	C	66550762	3	2	44	1	0	0	0	0	1	0	0	0	8971	971	34	3	3287	3	LRIG1	3	66550762	Missense_Mutation	SNP	G	TCGA-OR-A5L4-01A-11D-A29I-10	6	66550762	131471668	20	9262	111	2								
CHST13	166012	hgsc.bcm.edu	37	chr3	126260630	126260630	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.075	6	0.390483045913136	2.10712111990262	1.81446540880503	2.17735849056604	0.131221719457014	0.738095238095239	0	agcggcgcgacctgctgaacAgcgcctgtagccgccactca	12	16	1	1	rs12495696	byfrequency	TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	.	CHST13-90	NM_152889	exon3	c.A235G	p.S79G	CTGAACAGCGCCT	.	11	10	0	0	A|0.936;G|0.064	0	0	0	0	0	G	126260630	A	G	126260630	3	3	44	1	0	0	0	0	1	0	0	0	3407	188	7	4	245	4	CHST13	3	126260630	Missense_Mutation	SNP	A	TCGA-OR-A5L4-01A-11D-A29I-10	59709868	126260630	71761800	21	9263										
LNX1	84708	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	54439911	54439911	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.075	6	0.390483045913136	2.10712111990262	1.81446540880503	2.17735849056604	0.131221719457014	0.738095238095239	0	caggatgctggacttcttgcAgtgctgcagaaccagaggct	13	10	1	2	novel		TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	.	LNX1-229	NM_001126328	exon2	c.T259A	p.C87S	TCTTGCAGTGCTG	.	236	90	243	0	.	0	0	0	0	0	T	54439911	A	T	54439911	3	4	44	1	0	0	0	0	1	0	0	0	8889	188	7	5	2063	5	LNX1	4	54439911	Missense_Mutation	SNP	A	TCGA-OR-A5L4-01A-11D-A29I-10		54439911	136714365	22	9264										
LNX1	84708	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	54440019	54440019	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.075	6	0.390483045913136	2.10712111990262	1.81446540880503	2.17735849056604	0.131221719457014	0.738095238095239	0	tccacacggagtgtccagggGgtccagcaaagcctgcaggc	14	13	0	0	novel		TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	.	LNX1-229	NM_001126328	exon2	c.C151T	p.P51S	CCAGGGGGTCCAG	.	183	83	206	0	.	0	0	0	0	0	A	54440019	G	A	54440019	3	1	44	1	0	0	0	0	1	0	0	0	8889	1232	43	3	2171	3	LNX1	4	54440019	Missense_Mutation	SNP	G	TCGA-OR-A5L4-01A-11D-A29I-10	108	54440019	136714257	23	9265										
DSPP	1834	hgsc.bcm.edu	37	chr4	88537078	88537213	+	Frame_Shift_Del	DEL	TGACAGCAGCAATAGCAGTGACAGCAGCGATAGCAGCGACAGCAGCGACAGCAGCGATAGCAGTGACAGCAGCGATAGCAGTGACAGCAGTGACAGCAGCAATAGCAGTGACAGCAGTGACAGCAGCGACAGCAGT	TGACAGCAGCAATAGCAGTGACAGCAGCGATAGCAGCGACAGCAGCGACAGCAGCGATAGCAGTGACAGCAGCGATAGCAGTGACAGCAGTGACAGCAGCAATAGCAGTGACAGCAGTGACAGCAGCGACAGCAGT	-													0.075	6	0.390483045913136	2.10712111990262	1.81446540880503	2.17735849056604	0.131221719457014	0.738095238095239	0	agtgaaagcagtgatagcagTgacagcagcaatagcagtga					novel		TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10	TGACAGCAGCAATAGCAGTGACAGCAGCGATAGCAGCGACAGCAGCGACAGCAGCGATAGCAGTGACAGCAGCGATAGCAGTGACAGCAGTGACAGCAGCAATAGCAGTGACAGCAGTGACAGCAGCGACAGCAGT	TGACAGCAGCAATAGCAGTGACAGCAGCGATAGCAGCGACAGCAGCGACAGCAGCGATAGCAGTGACAGCAGCGATAGCAGTGACAGCAGTGACAGCAGCAATAGCAGTGACAGCAGTGACAGCAGCGACAGCAGT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	.	DSPP-90	NM_014208	exon5	c.3264_3399del	p.1088_1133del	TAGCAGTGACAGC	.	500	0	671	0	.	0	0	0	0	0	-	88537213	TGACAGCAGCAATAGCAGTGACAGCAGCGATAGCAGCGACAGCAGCGACAGCAGCGATAGCAGTGACAGCAGCGATAGCAGTGACAGCAGTGACAGCAGCAATAGCAGTGACAGCAGTGACAGCAGCGACAGCAGT	-	88537078	7	5	44	1	0	1	0	1	0	0	0	0	4793	1693	59	0	3278	0	DSPP	4	88537078	Frame_Shift_Del	DEL	TGACAGCAGCAATAGCAGTGACAGCAGCGATAGCAGCGACAGCAGCGACAGCAGCGATAGCAGTGACAGCAGCGATAGCAGTGACAGCAGTGACAGCAGCAATAGCAGTGACAGCAGTGACAGCAGCGACAGCAGT	TCGA-OR-A5L4-01A-11D-A29I-10	34097059	88537078	102617198	24	9266										
SPP1	6696	bcgsc.ca	37	chr4	88902692	88902692	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.075	6	0.390483045913136	2.10712111990262	1.81446540880503	2.17735849056604	0.131221719457014	0.738095238095239	0	atggatgatgaagatgatgaTgaccatgtggacagccagga	14	5	0	6	rs4754	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	.	SPP1-555	NM_001251830	exon7	c.T321C	p.D107D	TGATGATGACCAT	.	225	9	223	2	T|0.713;C|0.287	187	186	0	0	1	C	88902692	T	C	88902692	2	2	44	1	0	0	0	0	0	0	0	1	15123	1461	51	4		4	SPP1	4	88902692	Silent	SNP	T	TCGA-OR-A5L4-01A-11D-A29I-10	365614	88902692	102251584	25	9267										
OSMR	9180	broad.mit.edu;bcgsc.ca	37	chr5	38876350	38876350	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.075	6	0.390483045913136	2.10712111990262	1.81446540880503	2.17735849056604	0.131221719457014	0.738095238095239	0	ctgtatcacttaaagtttccAccaattctacgcgtcagagt	6	11	3	1	novel		TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	.	OSMR-496	NM_001168355	exon3	c.A121G	p.T41A	GTTTCCACCAATT	.	422	24	245	2	.	3	3	0	0	0	G	38876350	A	G	38876350	3	3	44	1	0	0	0	0	1	0	0	0	11321	159	6	4	127	4	OSMR	5	38876350	Missense_Mutation	SNP	A	TCGA-OR-A5L4-01A-11D-A29I-10		38876350	142038910	26	9268										
MIER3	166968	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr5	56224609	56224609	+	Frame_Shift_Del	DEL	A	A	-													0.075	6	0.390483045913136	2.10712111990262	1.81446540880503	2.17735849056604	0.131221719457014	0.738095238095239	0	tttaccttattcttctgtatAagatgaaaatcttttccaaa					novel		TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	.	MIER3-90	NM_152622	exon10	c.906delT	p.L302fs	CTGTATAAGATGA	.	185	45	131	0	.	0	0	0	0	0	-	56224609	A	-	56224609	7	5	44	1	0	1	0	1	0	0	0	0	9610	349	13	0	759	0	MIER3	5	56224609	Frame_Shift_Del	DEL	A	TCGA-OR-A5L4-01A-11D-A29I-10	17348259	56224609	124690651	27	9269										
SHROOM1	134549	broad.mit.edu	37	chr5	132160935	132160935	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.075	6	0.390483045913136	2.10712111990262	1.81446540880503	2.17735849056604	0.131221719457014	0.738095238095239	0	gctccgactccgactggcggGcctgaaggcatcaccgagct	13	15	1	1	novel		TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	.	SHROOM1-91	NM_133456	exon1	c.C898A	p.P300T	TGGCGGGCCTGAA	.	109	6	72	0	.	1	1	0	0	0	T	132160935	G	T	132160935	3	4	44	1	0	0	0	0	1	0	0	0	14328	1203	42	3	1688	3	SHROOM1	5	132160935	Missense_Mutation	SNP	G	TCGA-OR-A5L4-01A-11D-A29I-10	75936326	132160935	48754325	28	9270										
MATR3	9782	bcgsc.ca	37	chr5	138661351	138661351	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.075	6	0.390483045913136	2.10712111990262	1.81446540880503	2.17735849056604	0.131221719457014	0.738095238095239	0	atcagcccaatgttcctgttGgtgagatttaagtctttgtt	9	7	2	1	novel		TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	.	MATR3-91	NM_018834	exon13	c.G2371C	p.G791R	CCTGTTGGTGAGA	.	367	10	245	0	.	8	2	6	0	0	C	138661351	G	C	138661351	3	2	44	1	0	0	0	0	1	0	0	0	9365	1362	47	3	2417	3	MATR3	5	138661351	Missense_Mutation	SNP	G	TCGA-OR-A5L4-01A-11D-A29I-10	6500416	138661351	42253909	29	9271										
DND1	373863	ucsc.edu	37	chr5	140052407	140052407	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.075	6	0.390483045913136	2.10712111990262	1.81446540880503	2.17735849056604	0.131221719457014	0.738095238095239	0	ggcccacgcgctggaacagcGggataagctggtgctcgtac	15	12	0	0	rs75523379		TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	.	DND1-90	NM_194249	exon3	c.C227T	p.P76L	AACAGCGGGATAA	.	50	6	11	0	.	0	0	0	0	0	A	140052407	G	A	140052407	3	1	44	1	0	0	0	0	1	0	0	0	4677	1116	39	1	842	1	DND1	5	140052407	Missense_Mutation	SNP	G	TCGA-OR-A5L4-01A-11D-A29I-10	1391056	140052407	40862853	30	9272										
PCDHA3	56145	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	140182624	140182624	+	Silent	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.075	6	0.390483045913136	2.10712111990262	1.81446540880503	2.17735849056604	0.131221719457014	0.738095238095239	0	tcgtatgagctgcagcctggGaccggcggtgcgcgcatccc	15	14	0	1	novel		TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	.	PCDHA3-98	NM_031497	exon1	c.G1842T	p.G614G	GCCTGGGACCGGC	.	368	80	50	0	.	0	0	0	0	0	T	140182624	G	T	140182624	2	4	44	1	0	0	0	0	0	0	0	1	11554	1161	41	3		3	PCDHA3	5	140182624	Silent	SNP	G	TCGA-OR-A5L4-01A-11D-A29I-10	130217	140182624	40732636	31	9273										
ATP10B	23120	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	160025960	160025960	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.075	6	0.390483045913136	2.10712111990262	1.81446540880503	2.17735849056604	0.131221719457014	0.738095238095239	0	cagaagaactgataccagaaGagcaggttgacgtagcactg	12	8	0	6	novel		TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	.	ATP10B-72	NM_025153	exon22	c.C3381T	p.L1127L	CCAGAAGAGCAGG	.	168	88	95	0	.	0	0	0	0	0	A	160025960	G	A	160025960	2	1	44	1	0	0	0	0	0	0	0	1	1118	929	33	3		3	ATP10B	5	160025960	Silent	SNP	G	TCGA-OR-A5L4-01A-11D-A29I-10	19843336	160025960	20889300	32	9274										
CDHR2	54825	broad.mit.edu;bcgsc.ca	37	chr5	175995994	175995994	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.075	6	0.390483045913136	2.10712111990262	1.81446540880503	2.17735849056604	0.131221719457014	0.738095238095239	0	tcaaagtcaccatctccgtgAgcgacccctacatccaggtg	8	15	3	1	novel		TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	.	CDHR2-70	NM_017675	exon5	c.A298G	p.S100G	TCCGTGAGCGACC	.	107	40	73	2	.	0	0	0	0	0	G	175995994	A	G	175995994	3	3	44	1	0	0	0	0	1	0	0	0	3125	304	11	4	312	4	CDHR2	5	175995994	Missense_Mutation	SNP	A	TCGA-OR-A5L4-01A-11D-A29I-10	15970034	175995994	4919266	33	9275										
ATXN1	6310	broad.mit.edu	37	chr6	16327864	16327865	+	In_Frame_Ins	INS	-	-	TGC													0.075	6	0.390483045913136	2.10712111990262	1.81446540880503	2.17735849056604	0.131221719457014	0.738095238095239	0	gccccggagccctgctgaggINStgctgctgctgctgctgctg					rs71806515		TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	.	ATXN1-93	NM_001128164	exon7	c.678_679insGCA	p.H226delinsQH	GCTGAGGTGCTGC	.	55	0	12	0	.	0	0	0	0	0	TGC	16327865	-	TGC	16327864	7	5	44	1	0	1	1	0	0	0	0	0	1210	1252	44	0	1777	0	ATXN1	6	16327864	In_Frame_Ins	INS	-	TCGA-OR-A5L4-01A-11D-A29I-10		16327864	154787203	34	9276										
BEND3	57673	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr6	107391692	107391692	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.075	6	0.390483045913136	2.10712111990262	1.81446540880503	2.17735849056604	0.131221719457014	0.738095238095239	0	ctggaatttggccaccatctCagtggggctcacctgcttct	10	13	3	0	novel		TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	.	BEND3-71	NM_001080450	exon5	c.G703A	p.E235K	CCATCTCAGTGGG	.	206	16	162	0	.	0	0	0	0	0	T	107391692	C	T	107391692	3	4	44	1	0	0	0	0	1	0	0	0	1400	835	29	3	1787	3	BEND3	6	107391692	Missense_Mutation	SNP	C	TCGA-OR-A5L4-01A-11D-A29I-10	91063828	107391692	63723375	35	9277										
ECT2L	345930	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	139189242	139189242	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.075	6	0.390483045913136	2.10712111990262	1.81446540880503	2.17735849056604	0.131221719457014	0.738095238095239	0	gtggccttgtatttacagggCagtttatgtttgacaccatg	11	7	0	1	novel		TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	.	ECT2L-22	NM_001195037	exon12	c.C1477A	p.Q493K	ACAGGGCAGTTTA	.	176	22	183	0	.	0	0	0	0	0	A	139189242	C	A	139189242	3	1	44	1	0	0	0	0	1	0	0	0	4913	711	25	3	1519	3	ECT2L	6	139189242	Missense_Mutation	SNP	C	TCGA-OR-A5L4-01A-11D-A29I-10	31797550	139189242	31925825	36	9278										
CPVL	54504	broad.mit.edu;bcgsc.ca	37	chr7	29135786	29135786	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.075	6	0.390483045913136	2.10712111990262	1.81446540880503	2.17735849056604	0.131221719457014	0.738095238095239	0	ccaaacatggatgaacctccCggcccaccctgtagccagag	9	16	0	2	novel		TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	.	CPVL-92	NM_019029	exon4	c.G336A	p.P112P	ACCTCCCGGCCCA	.	202	10	122	1	.	7	7	0	0	0	T	29135786	C	T	29135786	2	4	44	1	0	0	0	0	0	0	0	1	3841	639	23	1		1	CPVL	7	29135786	Silent	SNP	C	TCGA-OR-A5L4-01A-11D-A29I-10		29135786	130002877	37	9279										
CUX1	1523	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	101758537	101758537	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.075	6	0.390483045913136	2.10712111990262	1.81446540880503	2.17735849056604	0.131221719457014	0.738095238095239	0	acctgaaaaccaaatacgatGaagaaactactgcaaagtaa	6	8	0	3	novel		TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	.	CUX1-160	NM_181500	exon8	c.G691A	p.E231K	TACGATGAAGAAA	.	153	24	120	0	.	26	24	2	0	0	A	101758537	G	A	101758537	3	1	44	1	0	0	0	0	1	0	0	0	4070	1291	45	3	755	3	CUX1	7	101758537	Missense_Mutation	SNP	G	TCGA-OR-A5L4-01A-11D-A29I-10	72622751	101758537	57380126	38	9280										
PRKAG2	51422	ucsc.edu;bcgsc.ca	37	chr7	151261307	151261307	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.075	6	0.390483045913136	2.10712111990262	1.81446540880503	2.17735849056604	0.131221719457014	0.738095238095239	0	gtatgttttctcagcagcaaGattctgtaatgaagcaagag	10	6	2	3	novel		TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	.	PRKAG2-658	NM_016203	exon14	c.C1441A	p.L481I	CAGCAAGATTCTG	.	164	82	138	3	.	0	0	0	0	0	T	151261307	G	T	151261307	3	4	44	1	0	0	0	0	1	0	0	0	12533	942	33	3	280	3	PRKAG2	7	151261307	Missense_Mutation	SNP	G	TCGA-OR-A5L4-01A-11D-A29I-10	49502770	151261307	7877356	39	9281										
CLDN23	137075	hgsc.bcm.edu	37	chr8	8560536	8560536	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.075	6	0.390483045913136	2.10712111990262	1.81446540880503	2.17735849056604	0.131221719457014	0.738095238095239	0	gcagcgtcagcaccatccaaGtggagtggcccgagcccgac	13	15	1	0	rs12548737	byfrequency	TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	.	.	NM_194284	exon1	c.G628A	p.V210M	ATCCAAGTGGAGT	.	9	9	0	0	G|0.907;A|0.093	0	0	0	0	0	A	8560536	G	A	8560536	3	1	44	1	0	0	0	0	1	0	0	0	3490	1029	36	3	630	3	CLDN23	8	8560536	Missense_Mutation	SNP	G	TCGA-OR-A5L4-01A-11D-A29I-10		8560536	137803486	40	9282										
XPO7	23039	bcgsc.ca	37	chr8	21846586	21846586	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.075	6	0.390483045913136	2.10712111990262	1.81446540880503	2.17735849056604	0.131221719457014	0.738095238095239	0	ctacagcttctcaatgacctGtccattggatatccttttct	5	12	2	1	rs2306646	byfrequency	TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	.	XPO7-273	NM_015024	exon16	c.G1860C	p.L620L	TGACCTGTCCATT	.	125	6	125	0	G|0.404;C|0.596	0	0	0	0	0	C	21846586	G	C	21846586	2	2	44	1	0	0	0	0	0	0	0	1	17487	1364	48	3		3	XPO7	8	21846586	Silent	SNP	G	TCGA-OR-A5L4-01A-11D-A29I-10	13286050	21846586	124517436	41	9283										
XPO7	23039	bcgsc.ca	37	chr8	21862551	21862551	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.075	6	0.390483045913136	2.10712111990262	1.81446540880503	2.17735849056604	0.131221719457014	0.738095238095239	0	cgtcgagaagtcaacgactcAatgaagaattccacttatgg	9	9	2	3	rs1058486	byfrequency	TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	.	XPO7-273	NM_015024	exon28	c.A3216G	p.S1072S	CGACTCAATGAAG	.	109	7	120	2	A|0.407;G|0.593	25	25	0	0	0	G	21862551	A	G	21862551	2	3	44	1	0	0	0	0	0	0	0	1	17487	117	5	4		4	XPO7	8	21862551	Silent	SNP	A	TCGA-OR-A5L4-01A-11D-A29I-10	15965	21862551	124501471	42	9284										
PLAT	5327	broad.mit.edu	37	chr8	42044953	42044953	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.075	6	0.390483045913136	2.10712111990262	1.81446540880503	2.17735849056604	0.131221719457014	0.738095238095239	0	ccccaggcccagcctgatggCgtctggcctccgcccgctgt	12	19	1	1	novel		TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	.	PLAT-226	NM_000930	exon6	c.G502T	p.A168S	TGATGGCGTCTGG	.	28	4	19	0	.	1	1	0	0	0	A	42044953	C	A	42044953	3	1	44	1	0	0	0	0	1	0	0	0	12050	768	27	2	1222	2	PLAT	8	42044953	Missense_Mutation	SNP	C	TCGA-OR-A5L4-01A-11D-A29I-10	20182402	42044953	104319069	43	9285										
OPRK1	4986	hgsc.bcm.edu	37	chr8	54163562	54163562	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.075	6	0.390483045913136	2.10712111990262	1.81446540880503	2.17735849056604	0.131221719457014	0.738095238095239	0	ctcggggcgcaggtagggccCggctccccgcggaagatctg	17	14	1	1	rs1051660	byfrequency	TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	.	OPRK1-70	NM_000912	exon2	c.G36T	p.P12P	AGGGCCCGGCTCC	.	8	8	0	0	C|0.895;A|0.105	0	0	0	0	0	A	54163562	C	A	54163562	2	1	44	1	0	0	0	0	0	0	0	1	10914	639	23	2		2	OPRK1	8	54163562	Silent	SNP	C	TCGA-OR-A5L4-01A-11D-A29I-10	12118609	54163562	92200460	44	9286										
PLEC	5339	hgsc.bcm.edu	37	chr8	144999417	144999417	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.075	6	0.390483045913136	2.10712111990262	1.81446540880503	2.17735849056604	0.131221719457014	0.738095238095239	0	agggccacctgtacctgccgCgctcgctccacctcggcctg	11	19	0	0	rs55836855	byfrequency	TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	.	PLEC-141	NM_201380	exon31	c.G5091A	p.A1697A	CTGCCGCGCTCGC	.	6	4	0	0	C|0.731;T|0.269	0	0	0	0	0	T	144999417	C	T	144999417	2	4	44	1	0	0	0	0	0	0	0	1	12081	755	27	1		1	PLEC	8	144999417	Silent	SNP	C	TCGA-OR-A5L4-01A-11D-A29I-10	90835855	144999417	1364605	45	9287										
SCRT1	83482	hgsc.bcm.edu	37	chr8	145557497	145557497	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.075	6	0.390483045913136	2.10712111990262	1.81446540880503	2.17735849056604	0.131221719457014	0.738095238095239	0	tgtggagggagcggcggcagAgccggcattggaagccttac	18	9	0	1	rs7013127		TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	.	.	NM_031309	exon2	c.T397G	p.S133A	CGGCAGAGCCGGC	.	6	6	0	0	A|0.096;C|0.904	0	0	0	0	0	C	145557497	A	C	145557497	3	2	44	1	0	0	0	0	1	0	0	0	13976	304	11	5	653	5	SCRT1	8	145557497	Missense_Mutation	SNP	A	TCGA-OR-A5L4-01A-11D-A29I-10	558080	145557497	806525	46	9288										
KLF4	9314	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr9	110251263	110251293	+	Frame_Shift_Del	DEL	GACGCGAACGTGGAGAAAGATGGGAGCAGCG	GACGCGAACGTGGAGAAAGATGGGAGCAGCG	-													0.075	6	0.390483045913136	2.10712111990262	1.81446540880503	2.17735849056604	0.131221719457014	0.738095238095239	0	tctcccttcccgccgggccaGacgcgaacgtggagaaagat					novel		TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10	GACGCGAACGTGGAGAAAGATGGGAGCAGCG	GACGCGAACGTGGAGAAAGATGGGAGCAGCG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	.	KLF4-651	NM_004235	exon2	c.44_74del	p.15_25del	GGGCCAGACGCGA	.	171	11	247	0	.	0	0	0	0	0	-	110251293	GACGCGAACGTGGAGAAAGATGGGAGCAGCG	-	110251263	7	5	44	1	0	1	0	1	0	0	0	0	8369	942	33	0	1381	0	KLF4	9	110251263	Frame_Shift_Del	DEL	GACGCGAACGTGGAGAAAGATGGGAGCAGCG	TCGA-OR-A5L4-01A-11D-A29I-10		110251263	30962168	47	9289										
EPB41L4B	54566	hgsc.bcm.edu	37	chr9	112082492	112082492	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.075	6	0.390483045913136	2.10712111990262	1.81446540880503	2.17735849056604	0.131221719457014	0.738095238095239	0	gagggtggccttggcggcgcCggcggcggagatgtgcacgg	22	10	0	1	novel		TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	.	EPB41L4B-92	NM_019114	exon1	c.G235T	p.G79C	CGGCGCCGGCGGC	.	57	47	1	0	.	0	0	0	0	0	A	112082492	C	A	112082492	3	1	44	1	0	0	0	0	1	0	0	0	5169	652	23	2	2723	2	EPB41L4B	9	112082492	Missense_Mutation	SNP	C	TCGA-OR-A5L4-01A-11D-A29I-10	1831229	112082492	29130939	48	9290										
ENTPD8	377841	broad.mit.edu	37	chr9	140329710	140329710	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.075	6	0.390483045913136	2.10712111990262	1.81446540880503	2.17735849056604	0.131221719457014	0.738095238095239	0	tcgctgaacccgtagccctcGtgcaggagggtgaggatgta	15	10	0	2	rs202080880	alternate_allele	TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	.	ENTPD8-91	NM_001033113	exon9	c.C1242A	p.H414Q	GCCCTCGTGCAGG	.	107	4	76	0	G|0.999;A|0.000	0	0	0	0	0	T	140329710	G	T	140329710	3	4	44	1	0	0	0	0	1	0	0	0	5158	1136	40	2	253	2	ENTPD8	9	140329710	Missense_Mutation	SNP	G	TCGA-OR-A5L4-01A-11D-A29I-10	28247218	140329710	883721	49	9291										
GPR158	57512	broad.mit.edu	37	chr10	25861657	25861657	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.075	6	0.390483045913136	2.10712111990262	1.81446540880503	2.17735849056604	0.131221719457014	0.738095238095239	0	gggtcatgaggatgctggcaGtaatactcttggtagtgttt	14	5	2	1	novel		TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	.	GPR158-141	NM_020752	exon7	c.G1594T	p.V532L	CTGGCAGTAATAC	.	120	3	189	1	.	0	0	0	0	0	T	25861657	G	T	25861657	3	4	44	1	0	0	0	0	1	0	0	0	6683	1029	36	3	1620	3	GPR158	10	25861657	Missense_Mutation	SNP	G	TCGA-OR-A5L4-01A-11D-A29I-10		25861657	109673090	50	9292										
ABLIM1	3983	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr10	116225545	116225545	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.075	6	0.390483045913136	2.10712111990262	1.81446540880503	2.17735849056604	0.131221719457014	0.738095238095239	0	gagttgatggagccctggctCgtggaccgatggatcatccg	15	10	1	1	novel		TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	.	ABLIM1-153	NM_002313	exon12	c.G1353A	p.T451T	CTGGCTCGTGGAC	.	137	55	176	0	.	0	0	0	0	0	T	116225545	C	T	116225545	2	4	44	1	0	0	0	0	0	0	0	1	94	871	31	1		1	ABLIM1	10	116225545	Silent	SNP	C	TCGA-OR-A5L4-01A-11D-A29I-10	90363888	116225545	19309202	51	9293										
KRTAP5-4	387267	bcgsc.ca	37	chr11	1643204	1643204	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.075	6	0.390483045913136	2.10712111990262	1.81446540880503	2.17735849056604	0.131221719457014	0.738095238095239	0	gagccacagcccccacagccGgagccacagcccccacagcc	9	22	0	0	novel		TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	.	.	NM_001012709	exon1	c.C120T	p.S40S	ACAGCCGGAGCCA	.	92	20	42	0	.	1	1	0	0	0	A	1643204	G	A	1643204	2	1	44	1	0	0	0	0	0	0	0	1	8585	1103	39	1		1	KRTAP5-4	11	1643204	Silent	SNP	G	TCGA-OR-A5L4-01A-11D-A29I-10		1643204	133363312	52	9294										
OR52N1	79473	bcgsc.ca	37	chr11	5809746	5809746	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.075	6	0.390483045913136	2.10712111990262	1.81446540880503	2.17735849056604	0.131221719457014	0.738095238095239	0	gtgcacaaagaacatctgggCgaggcaggctttaaaatcaa	11	8	2	1	rs10742787	byfrequency	TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	.	OR52N1-69	NM_001001913	exon1	c.G301A	p.A101T	TCTGGGCGAGGCA	.	152	6	164	1	C|0.675;T|0.325	0	0	0	0	0	T	5809746	C	T	5809746	3	4	44	1	0	0	0	0	1	0	0	0	11156	768	27	1	664	1	OR52N1	11	5809746	Missense_Mutation	SNP	C	TCGA-OR-A5L4-01A-11D-A29I-10	4166542	5809746	129196770	53	9295										
EIF3F	8665	hgsc.bcm.edu	37	chr11	8009015	8009015	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.075	6	0.390483045913136	2.10712111990262	1.81446540880503	2.17735849056604	0.131221719457014	0.738095238095239	0	accggctgcggctccggttcCcgctgcggctccagcctcat	12	18	1	0	rs1043738	byfrequency	TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	.	EIF3F-500	NM_003754	exon1	c.C116T	p.P39L	CGGTTCCCGCTGC	.	6	6	0	0	C|0.964;T|0.036	88	7	81	0	0	T	8009015	C	T	8009015	3	4	44	1	0	0	0	0	1	0	0	0	5029	623	22	3	118	3	EIF3F	11	8009015	Missense_Mutation	SNP	C	TCGA-OR-A5L4-01A-11D-A29I-10	2199269	8009015	126997501	54	9296										
LDHA	3939	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr11	18428729	18428729	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.075	6	0.390483045913136	2.10712111990262	1.81446540880503	2.17735849056604	0.131221719457014	0.738095238095239	0	attttgggacagaatggaatCtcagaccttgtgaaggtgac	12	6	1	4	novel		TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	.	LDHA-650	NM_001165414	exon8	c.C987G	p.I329M	TGGAATCTCAGAC	.	159	10	186	0	.	606	580	25	1	0	G	18428729	C	G	18428729	3	3	44	1	0	0	0	0	1	0	0	0	8720	903	32	3	1017	3	LDHA	11	18428729	Missense_Mutation	SNP	C	TCGA-OR-A5L4-01A-11D-A29I-10	10419714	18428729	116577787	55	9297										
FNBP4	23360	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	47772525	47772525	+	Silent	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.075	6	0.390483045913136	2.10712111990262	1.81446540880503	2.17735849056604	0.131221719457014	0.738095238095239	0	ttactactggaaacagaaatCgttttctccttagaatatat	5	7	1	2	novel		TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	.	FNBP4-91	NM_015308	exon6	c.G849T	p.T283T	AGAAATCGTTTTC	.	43	30	77	0	.	4	1	3	0	0	A	47772525	C	A	47772525	2	1	44	1	0	0	0	0	0	0	0	1	5986	871	31	2		2	FNBP4	11	47772525	Silent	SNP	C	TCGA-OR-A5L4-01A-11D-A29I-10	29343796	47772525	87233991	56	9298										
CCDC88B	283234	hgsc.bcm.edu	37	chr11	64112617	64112617	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.075	6	0.390483045913136	2.10712111990262	1.81446540880503	2.17735849056604	0.131221719457014	0.738095238095239	0	agggagcgccgggagaaggaGgccctccaggcggtaggtca	19	10	1	1	novel		TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	.	CCDC88B-94	NM_032251	exon14	c.G2604T	p.E868D	GAAGGAGGCCCTC	.	33	4	13	0	.	0	0	0	0	0	T	64112617	G	T	64112617	3	4	44	1	0	0	0	0	1	0	0	0	2870	991	35	3	2658	3	CCDC88B	11	64112617	Missense_Mutation	SNP	G	TCGA-OR-A5L4-01A-11D-A29I-10	16340092	64112617	70893899	57	9299										
CST6	1474	hgsc.bcm.edu	37	chr11	65779590	65779590	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.075	6	0.390483045913136	2.10712111990262	1.81446540880503	2.17735849056604	0.131221719457014	0.738095238095239	0	ctcctggcgctgccacgcgaCgcccgggcccggccgcagga	15	19	0	0	rs1131544		TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	.	CST6-523	NM_001323	exon1	c.C75T	p.D25D	ACGCGACGCCCGG	.	6	6	0	0	C|0.921;T|0.079	0	0	0	0	0	T	65779590	C	T	65779590	2	4	44	1	0	0	0	0	0	0	0	1	3982	535	19	1		1	CST6	11	65779590	Silent	SNP	C	TCGA-OR-A5L4-01A-11D-A29I-10	1666973	65779590	69226926	58	9300										
GAL3ST3	89792	hgsc.bcm.edu	37	chr11	65810209	65810209	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.075	6	0.390483045913136	2.10712111990262	1.81446540880503	2.17735849056604	0.131221719457014	0.738095238095239	0	accttgcggctgggctgccaCggctgcagctgcttggtgcg	16	13	0	0	rs61895584	byfrequency	TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	.	GAL3ST3-91	NM_033036	exon3	c.G1065A	p.P355P	CTGCCACGGCTGC	.	4	4	0	0	C|0.233;T|0.767	0	0	0	0	0	T	65810209	C	T	65810209	2	4	44	1	0	0	0	0	0	0	0	1	6219	523	19	1		1	GAL3ST3	11	65810209	Silent	SNP	C	TCGA-OR-A5L4-01A-11D-A29I-10	30619	65810209	69196307	59	9301										
TPCN2	219931	bcgsc.ca	37	chr11	68840160	68840160	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.075	6	0.390483045913136	2.10712111990262	1.81446540880503	2.17735849056604	0.131221719457014	0.738095238095239	0	ccagctggacagctcccacaAacaggccatgatggaggtac	11	13	0	1	rs3750965	byfrequency	TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	.	TPCN2-90	NM_139075	exon12	c.A1127G	p.K376R	CCCACAAACAGGC	.	108	6	161	1	A|0.718;G|0.282	0	0	0	0	0	G	68840160	A	G	68840160	3	3	44	1	0	0	0	0	1	0	0	0	16434	14	1	4	1173	4	TPCN2	11	68840160	Missense_Mutation	SNP	A	TCGA-OR-A5L4-01A-11D-A29I-10	3029951	68840160	66166356	60	9302										
TAS2R50	259296	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	11138943	11138943	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.075	6	0.390483045913136	2.10712111990262	1.81446540880503	2.17735849056604	0.131221719457014	0.738095238095239	0	tacagtcaaatatgaaagatGtactgtattcctcaatttca	5	7	3	2	novel		TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	.	TAS2R50-92	NM_176890	exon1	c.C517A	p.H173N	AAAGATGTACTGT	.	135	15	99	0	.	0	0	0	0	0	T	11138943	G	T	11138943	3	4	44	1	0	0	0	0	1	0	0	0	15621	1377	48	3	386	3	TAS2R50	12	11138943	Missense_Mutation	SNP	G	TCGA-OR-A5L4-01A-11D-A29I-10		11138943	122712952	61	9303										
TAS2R31	259290	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	11183657	11183657	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.075	6	0.390483045913136	2.10712111990262	1.81446540880503	2.17735849056604	0.131221719457014	0.738095238095239	0	tagcaagccagttgctgaaaTggccggttactgcccagaca	11	11	0	2	novel		TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	.	.	NM_176885	exon1	c.A278G	p.H93R	CTGAAATGGCCGG	.	315	86	225	1	.	0	0	0	0	0	C	11183657	T	C	11183657	3	2	44	1	0	0	0	0	1	0	0	0	15611	1464	51	4	655	4	TAS2R31	12	11183657	Missense_Mutation	SNP	T	TCGA-OR-A5L4-01A-11D-A29I-10	44714	11183657	122668238	62	9304										
EEA1	8411	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	93251238	93251238	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.075	6	0.390483045913136	2.10712111990262	1.81446540880503	2.17735849056604	0.131221719457014	0.738095238095239	0	cctgtaggtcttggacctctTgtctgagcagtgttacatca	10	10	4	1	novel		TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	.	EEA1-229	NM_003566	exon4	c.A269G	p.Q90R	ACCTCTTGTCTGA	.	202	62	137	0	.	0	0	0	0	0	C	93251238	T	C	93251238	3	2	44	1	0	0	0	0	1	0	0	0	4932	1812	63	4	4070	4	EEA1	12	93251238	Missense_Mutation	SNP	T	TCGA-OR-A5L4-01A-11D-A29I-10	82067581	93251238	40600657	63	9305										
TMEM119	338773	hgsc.bcm.edu	37	chr12	108986112	108986112	+	Silent	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.075	6	0.390483045913136	2.10712111990262	1.81446540880503	2.17735849056604	0.131221719457014	0.738095238095239	0	gtagcaggcacagaccccagGagcagcaacagaaggatgag	14	10	0	3	rs10861953	byfrequency	TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	.	TMEM119-69	NM_181724	exon2	c.C48G	p.L16L	CCCCAGGAGCAGC	.	5	5	3	0	G|0.822;C|0.178	1	0	1	0	0	C	108986112	G	C	108986112	2	2	44	1	0	0	0	0	0	0	0	1	16069	1161	41	3		3	TMEM119	12	108986112	Silent	SNP	G	TCGA-OR-A5L4-01A-11D-A29I-10	15734874	108986112	24865783	64	9306										
SPERT	220082	hgsc.bcm.edu	37	chr13	46288017	46288017	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.075	6	0.390483045913136	2.10712111990262	1.81446540880503	2.17735849056604	0.131221719457014	0.738095238095239	0	ggaaagcaagcccgccccctCaccccacgaggagccctgca	10	19	1	0	rs79707842		TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	.	SPERT-91	NM_152719	exon3	c.C857A	p.S286X	CCCCCTCACCCCA	.	4	4	1	0	C|0.925;A|0.075	0	0	0	0	0	A	46288017	C	A	46288017	4	1	44	1	0	0	0	0	0	1	0	0	15076	838	29	3	867	3	SPERT	13	46288017	Nonsense_Mutation	SNP	C	TCGA-OR-A5L4-01A-11D-A29I-10		46288017	68881861	65	9307										
DAAM1	23002	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr14	59835519	59835519	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.075	6	0.390483045913136	2.10712111990262	1.81446540880503	2.17735849056604	0.131221719457014	0.738095238095239	0	gaaacggaatcgcaaacgtaTtaccaaccagatgactgaca	8	10	0	3	novel		TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	.	DAAM1-227	NM_014992	exon25	c.T3179C	p.I1060T	AACGTATTACCAA	.	147	60	108	0	.	35	22	13	0	0	C	59835519	T	C	59835519	3	2	44	1	0	0	0	0	1	0	0	0	4221	1493	52	4	3277	4	DAAM1	14	59835519	Missense_Mutation	SNP	T	TCGA-OR-A5L4-01A-11D-A29I-10		59835519	47514021	66	9308										
CLPX	10845	bcgsc.ca	37	chr15	65449228	65449228	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.075	6	0.390483045913136	2.10712111990262	1.81446540880503	2.17735849056604	0.131221719457014	0.738095238095239	0	cccgtaattgatgaatgcctGgcacactgccaatcttatct	7	12	2	2	novel		TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	.	CLPX-90	NM_006660	exon9	c.C1100A	p.P367Q	ATGCCTGGCACAC	.	66	4	100	1	.	23	23	0	0	0	T	65449228	G	T	65449228	3	4	44	1	0	0	0	0	1	0	0	0	3562	1348	47	3	825	3	CLPX	15	65449228	Missense_Mutation	SNP	G	TCGA-OR-A5L4-01A-11D-A29I-10		65449228	37082164	67	9309										
TMEM8A	58986	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr16	426160	426160	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.075	6	0.390483045913136	2.10712111990262	1.81446540880503	2.17735849056604	0.131221719457014	0.738095238095239	0	ttggcccgcagggagatggtGagggaacccccgctgtccat	15	12	0	2	novel		TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	.	TMEM8A-92	NM_021259	exon6	c.C1200T	p.L400L	GATGGTGAGGGAA	.	236	65	72	0	.	33	24	9	0	0	A	426160	G	A	426160	2	1	44	1	0	0	0	0	0	0	0	1	16251	1277	45	3		3	TMEM8A	16	426160	Silent	SNP	G	TCGA-OR-A5L4-01A-11D-A29I-10		426160	89928593	68	9310										
EME2	197342	hgsc.bcm.edu	37	chr16	1823444	1823444	+	Silent	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.075	6	0.390483045913136	2.10712111990262	1.81446540880503	2.17735849056604	0.131221719457014	0.738095238095239	0	ctgctgcggccggagcaggtCctgaagcgcctcgcggtgtg	17	13	0	1	rs761065		TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	.	EME2-229	NM_001257370	exon1	c.C216G	p.V72V	GCAGGTCCTGAAG	.	5	5	0	0	C|0.615;G|0.385	0	0	0	0	0	G	1823444	C	G	1823444	2	3	44	1	0	0	0	0	0	0	0	1	5102	842	30	3		3	EME2	16	1823444	Silent	SNP	C	TCGA-OR-A5L4-01A-11D-A29I-10	1397284	1823444	88531309	69	9311										
IGSF6	10261	hgsc.bcm.edu;bcgsc.ca	37	chr16	21652899	21652901	+	In_Frame_Del	DEL	TGT	TGT	-													0.075	6	0.390483045913136	2.10712111990262	1.81446540880503	2.17735849056604	0.131221719457014	0.738095238095239	0	tactcttctgttttcataagTgttgttatctttctcctgca					novel		TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10	TGT	TGT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	.	IGSF6-68	NM_005849	exon6	c.680_682del	p.227_228del	CATAAGTGTTGTT	.	60	19	49	0	.	0	0	0	0	0	-	21652901	TGT	-	21652899	7	5	44	1	0	1	0	1	0	0	0	0	7624	1696	59	0	47	0	IGSF6	16	21652899	In_Frame_Del	DEL	TGT	TCGA-OR-A5L4-01A-11D-A29I-10	19829455	21652899	68701854	70	9312										
DLGAP1	9229	broad.mit.edu	37	chr18	3879165	3879165	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.075	6	0.390483045913136	2.10712111990262	1.81446540880503	2.17735849056604	0.131221719457014	0.738095238095239	0	cgactcggacttcaccatggCctggtccatgttcaccgagg	11	14	2	0	novel		TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	.	DLGAP1-229	NM_001242761	exon4	c.G904T	p.A302S	CCATGGCCTGGTC	.	51	7	58	2	.	0	0	0	0	0	A	3879165	C	A	3879165	3	1	44	1	0	0	0	0	1	0	0	0	4570	739	26	3	2124	3	DLGAP1	18	3879165	Missense_Mutation	SNP	C	TCGA-OR-A5L4-01A-11D-A29I-10		3879165	74198083	71	9313										
LAMA1	284217	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr18	7007263	7007263	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.075	6	0.390483045913136	2.10712111990262	1.81446540880503	2.17735849056604	0.131221719457014	0.738095238095239	0	gagcttccctctgtggtaccCaggggcgcagtcctgagggg	16	12	1	1	novel		TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	.	LAMA1-149	NM_005559	exon29	c.G4135A	p.G1379R	GGTACCCAGGGGC	.	58	25	58	1	.	0	0	0	0	0	T	7007263	C	T	7007263	3	4	44	1	0	0	0	0	1	0	0	0	8627	594	21	3	5232	3	LAMA1	18	7007263	Missense_Mutation	SNP	C	TCGA-OR-A5L4-01A-11D-A29I-10	3128098	7007263	71069985	72	9314										
CD320	51293	hgsc.bcm.edu	37	chr19	8373152	8373152	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.075	6	0.390483045913136	2.10712111990262	1.81446540880503	2.17735849056604	0.131221719457014	0.738095238095239	0	ctgttcgccacgctccaaccTgcgccatccaaccgccgctc	7	21	0	0	rs2232775	byfrequency	TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	.	CD320-90	NM_001165895	exon1	c.A23G	p.Q8R	CCAACCTGCGCCA	.	25	21	0	0	T|0.852;C|0.148	47	32	15	0	0	C	8373152	T	C	8373152	3	2	44	1	0	0	0	0	1	0	0	0	3010	1580	55	4	845	4	CD320	19	8373152	Missense_Mutation	SNP	T	TCGA-OR-A5L4-01A-11D-A29I-10		8373152	50755831	73	9315										
OR7G3	390883	bcgsc.ca	37	chr19	9236886	9236886	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.075	6	0.390483045913136	2.10712111990262	1.81446540880503	2.17735849056604	0.131221719457014	0.738095238095239	0	gttccataaaacaaggaaacAacgattaaatgtgacccgca	7	9	0	1	rs10424352	byfrequency	TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	.	OR7G3-69	NM_001001958	exon1	c.T741C	p.V247V	GGAAACAACGATT	.	187	7	140	1	A|0.585;G|0.415	0	0	0	0	0	G	9236886	A	G	9236886	2	3	44	1	0	0	0	0	0	0	0	1	11253	117	5	4		4	OR7G3	19	9236886	Silent	SNP	A	TCGA-OR-A5L4-01A-11D-A29I-10	863734	9236886	49892097	74	9316										
MRI1	84245	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	13879744	13879744	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.075	6	0.390483045913136	2.10712111990262	1.81446540880503	2.17735849056604	0.131221719457014	0.738095238095239	0	caccatggcattcccttctaCgtggctgcccccagctcttc	7	18	2	0	novel		TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	.	MRI1-91	NM_001031727	exon5	c.C831T	p.Y277Y	CTTCTACGTGGCT	.	176	38	140	0	.	9	6	3	0	0	T	13879744	C	T	13879744	2	4	44	1	0	0	0	0	0	0	0	1	9798	547	19	1		1	MRI1	19	13879744	Silent	SNP	C	TCGA-OR-A5L4-01A-11D-A29I-10	4642858	13879744	45249239	75	9317										
BRD4	23476	broad.mit.edu	37	chr19	15354176	15354176	+	Frame_Shift_Del	DEL	G	G	-													0.075	6	0.390483045913136	2.10712111990262	1.81446540880503	2.17735849056604	0.131221719457014	0.738095238095239	0	gggttgggccatggggggctGtgggagcaggggtgtttggg					novel		TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	.	BRD4-767	NM_058243	exon14	c.2704delC	p.Q902fs	GGGGCTGTGGGAG	.	49	9	4	0	.	0	0	0	0	0	-	15354176	G	-	15354176	7	5	44	1	0	1	0	1	0	0	0	0	1507	1386	48	0	1412	0	BRD4	19	15354176	Frame_Shift_Del	DEL	G	TCGA-OR-A5L4-01A-11D-A29I-10	1474432	15354176	43774807	76	9318										
GLTSCR1	29998	hgsc.bcm.edu	37	chr19	48205288	48205288	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.075	6	0.390483045913136	2.10712111990262	1.81446540880503	2.17735849056604	0.131221719457014	0.738095238095239	0	gggctcatccgcgagctggcGgccgtggaggacgagctgta	18	11	1	0	rs8100472		TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	.	GLTSCR1-48	NM_015711	exon15	c.G4299A	p.A1433A	GCTGGCGGCCGTG	.	6	4	0	0	G|0.917;A|0.083	1	0	1	0	0	A	48205288	G	A	48205288	2	1	44	1	0	0	0	0	0	0	0	1	6494	1103	39	1		1	GLTSCR1	19	48205288	Silent	SNP	G	TCGA-OR-A5L4-01A-11D-A29I-10	32851112	48205288	10923695	77	9319										
ZNF264	9422	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	57723887	57723887	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.075	6	0.390483045913136	2.10712111990262	1.81446540880503	2.17735849056604	0.131221719457014	0.738095238095239	0	aaggacctcattcgccacttCagcatccacactggagagaa	8	13	2	1	novel		TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	.	ZNF264-92	NM_003417	exon4	c.C1422T	p.F474F	CCACTTCAGCATC	.	159	77	135	2	.	7	7	0	0	0	T	57723887	C	T	57723887	2	4	44	1	0	0	0	0	0	0	0	1	17841	825	29	3		3	ZNF264	19	57723887	Silent	SNP	C	TCGA-OR-A5L4-01A-11D-A29I-10	9518599	57723887	1405096	78	9320										
SNTA1	6640	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr20	31996515	31996515	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.075	6	0.390483045913136	2.10712111990262	1.81446540880503	2.17735849056604	0.131221719457014	0.738095238095239	0	cccctcactcacgatctcgcCttcagcacctccaaaatcca	3	20	4	0	novel		TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	.	SNTA1-91	NM_003098	exon7	c.G1417A	p.G473S	TCTCGCCTTCAGC	.	243	102	235	0	.	0	0	0	0	0	T	31996515	C	T	31996515	3	4	44	1	0	0	0	0	1	0	0	0	14906	681	24	3	108	3	SNTA1	20	31996515	Missense_Mutation	SNP	C	TCGA-OR-A5L4-01A-11D-A29I-10		31996515	31029005	79	9321										
ACTR5	79913	hgsc.bcm.edu	37	chr20	37377139	37377139	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.075	6	0.390483045913136	2.10712111990262	1.81446540880503	2.17735849056604	0.131221719457014	0.738095238095239	0	aagatggcggcgaacgtgttCccgttccgcgacgcccgtgc	14	14	0	1	rs2254105	byfrequency	TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	.	ACTR5-90	NM_024855	exon1	c.C18T	p.F6F	CGTGTTCCCGTTC	.	6	6	0	0	C|0.769;T|0.231	0	0	0	0	0	T	37377139	C	T	37377139	2	4	44	1	0	0	0	0	0	0	0	1	215	854	30	3		3	ACTR5	20	37377139	Silent	SNP	C	TCGA-OR-A5L4-01A-11D-A29I-10	5380624	37377139	25648381	80	9322										
KRTAP10-2	386679	ucsc.edu	37	chr21	45971225	45971225	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.075	6	0.390483045913136	2.10712111990262	1.81446540880503	2.17735849056604	0.131221719457014	0.738095238095239	0	accagggtcaggcagggggcTggggcacagcagctgggggt	21	9	1	0	novel		TCGA-OR-A5L4-01A-11D-A29I-10	TCGA-OR-A5L4-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	594bdeaa-8494-4426-8e7f-4a3227b3ce13	d404f51a-ce1f-420c-b8dd-f19d19ce0e3b	.	KRTAP10-2-135	NM_198693	exon1	c.A117G	p.P39P	GGGGGCTGGGGCA	.	68	9	18	1	.	0	0	0	0	0	C	45971225	T	C	45971225	2	2	44	1	0	0	0	0	0	0	0	1	8530	1567	55	4		4	KRTAP10-2	21	45971225	Silent	SNP	T	TCGA-OR-A5L4-01A-11D-A29I-10		45971225	2158670	81	9323										
PRAMEF2	65122	bcgsc.ca	37	chr1	12919623	12919624	+	Missense_Mutation	DNP	CC	CC	TG													0.00884955752212389	1	1	0.235279399499583	0	0.300938766801792	1	1	0	agatggcctggagcctgggcCctgtcctgcttcccagaggc					novel		TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	CC	CC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	PRAMEF2-68	NM_023014	exon3	c.C364G	p.L122V	TGGGCCCTGTCCT	.	289	0	279	0	C|0.896;G|0.104	0	0	0	0	0	TG	12919624	CC	TG	12919623	3	4	45	1	0	0	0	0	1	0	0	0	12467	610	22	3	369	3	PRAMEF2	1	12919623	Missense_Mutation	DNP	CC	TCGA-OR-A5L5-01A-11D-A29I-10		12919623	236330998	1	9324										
AKR7L	246181	bcgsc.ca	37	chr1	19600376	19600377	+	RNA	DNP	TT	TT	GC													0.00884955752212389	1	1	0.235279399499583	0	0.300938766801792	1	1	0	tctgcagtcgctgctgcccaTtcggagccccaggccgccaa					novel		TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	TT	TT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	AKR7L-90	.	.	.	.	GCCCATTCGGAGC	.	188	0	46	0	.	0	0	0	0	0	GC	19600377	TT	GC	19600376	1	3	45	0	1	0	0	0	0	0	0	0	477	1493	52	5		5	AKR7L	1	19600376	RNA	DNP	TT	TCGA-OR-A5L5-01A-11D-A29I-10	6680753	19600376	229650245	2	9325										
L1TD1	54596	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	62675591	62675591	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.00884955752212389	1	1	0.235279399499583	0	0.300938766801792	1	1	0	gactcaagaggaagagttttCcgagctagaggagctggatg	15	6	1	3	novel		TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	L1TD1-92	NM_001164835	exon5	c.C1145T	p.S382F	AGTTTTCCGAGCT	.	198	15	216	0	.	0	0	0	0	0	T	62675591	C	T	62675591	3	4	45	1	0	0	0	0	1	0	0	0	8611	855	30	3	1151	3	L1TD1	1	62675591	Missense_Mutation	SNP	C	TCGA-OR-A5L5-01A-11D-A29I-10	43075215	62675591	186575030	3	9326										
LCE1E	353135	ucsc.edu;bcgsc.ca	37	chr1	152760075	152760075	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.00884955752212389	1	1	0.235279399499583	0	0.300938766801792	1	1	0	gactgctgcagccagccctcAgggggctccagctgctgtgg	15	14	1	0	rs201660535	byfrequency	TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	LCE1E-90	NM_178353	exon2	c.A300G	p.S100S	GCCCTCAGGGGGC	.	102	24	87	1	A|0.995;G|0.005	0	0	0	0	0	G	152760075	A	G	152760075	2	3	45	1	0	0	0	0	0	0	0	1	8685	175	7	4		4	LCE1E	1	152760075	Silent	SNP	A	TCGA-OR-A5L5-01A-11D-A29I-10	90084484	152760075	96490546	4	9327										
FAM189B	10712	hgsc.bcm.edu	37	chr1	155220208	155220208	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00884955752212389	1	1	0.235279399499583	0	0.300938766801792	1	1	0	gaagcgacgagtcggggctcGggtgggcggggctgcggctg	23	9	0	0	novel		TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	FAM189B-154	NM_006589	exon9	c.C1369T	p.R457X	GGGCTCGGGTGGG	.	10	7	1	0	.	0	0	0	0	0	A	155220208	G	A	155220208	4	1	45	1	0	0	0	0	0	1	0	0	5533	1124	39	1	653	1	FAM189B	1	155220208	Nonsense_Mutation	SNP	G	TCGA-OR-A5L5-01A-11D-A29I-10	2460133	155220208	94030413	5	9328										
OBSCN	84033	hgsc.bcm.edu	37	chr1	228504670	228504670	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.00884955752212389	1	1	0.235279399499583	0	0.300938766801792	1	1	0	gcgacgccgtggcctctgcgCggctcaccgtgctgggtggg	18	14	2	0	rs11810627	byfrequency	TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	OBSCN-403	NM_001271223	exon62	c.C16417T	p.R5473W	TCTGCGCGGCTCA	.	5	4	1	0	C|0.643;T|0.357	0	0	0	0	0	T	228504670	C	T	228504670	3	4	45	1	0	0	0	0	1	0	0	0	10841	759	27	1	13744	1	OBSCN	1	228504670	Missense_Mutation	SNP	C	TCGA-OR-A5L5-01A-11D-A29I-10	73284462	228504670	20745951	6	9329										
SIX3	6496	hgsc.bcm.edu	37	chr2	45171842	45171842	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.00884955752212389	1	1	0.235279399499583	0	0.300938766801792	1	1	0	tccagcctgacggagcgcgcAgacaccggcacctccatcct	10	18	0	2	rs62840660	byfrequency	TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	SIX3-90	NM_005413	exon2	c.A942G	p.A314A	GCGCGCAGACACC	.	5	5	0	0	A|0.059;G|0.941	0	0	0	0	0	G	45171842	A	G	45171842	2	3	45	1	0	0	0	0	0	0	0	1	14383	175	7	4		4	SIX3	2	45171842	Silent	SNP	A	TCGA-OR-A5L5-01A-11D-A29I-10		45171842	198027531	7	9330										
EFHD1	80303	bcgsc.ca	37	chr2	233537125	233537125	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.00884955752212389	1	1	0.235279399499583	0	0.300938766801792	1	1	0	tgtggccctggagggtgtcaAaggtgccaagaacttctttg	14	8	2	1	rs11550699	byfrequency	TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	EFHD1-90	NM_025202	exon3	c.A557G	p.K186R	GTGTCAAAGGTGC	.	255	7	258	0	A|0.685;G|0.315	1	1	0	0	0	G	233537125	A	G	233537125	3	3	45	1	0	0	0	0	1	0	0	0	4959	14	1	4	567	4	EFHD1	2	233537125	Missense_Mutation	SNP	A	TCGA-OR-A5L5-01A-11D-A29I-10	188365283	233537125	9662248	8	9331										
C2orf54	79919	bcgsc.ca	37	chr2	241828012	241828012	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.00884955752212389	1	1	0.235279399499583	0	0.300938766801792	1	1	0	cggtacacggcgccctgcagTtctgcccagtcctcgggcgc	13	17	1	0	rs6708304	byfrequency	TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	C2orf54-90	NM_001085437	exon4	c.A948G	p.E316E	CTGCAGTTCTGCC	.	119	99	9	0	T|0.464;C|0.536	0	0	0	0	0	C	241828012	T	C	241828012	2	2	45	1	0	0	0	0	0	0	0	1	2181	1722	60	4		4	C2orf54	2	241828012	Silent	SNP	T	TCGA-OR-A5L5-01A-11D-A29I-10	8290887	241828012	1371361	9	9332										
TTLL3	26140	bcgsc.ca	37	chr3	9870857	9870857	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00884955752212389	1	1	0.235279399499583	0	0.300938766801792	1	1	0	acctcccaggacaccgtgcaGtgtcggaaggccagctttga	12	13	0	1	rs2290303	byfrequency	TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	TTLL3-585	NM_001025930	exon10	c.G1761A	p.Q587Q	CGTGCAGTGTCGG	.	286	8	248	3	G|0.623;A|0.377	15	15	0	0	0	A	9870857	G	A	9870857	2	1	45	1	0	0	0	0	0	0	0	1	16766	1020	36	3		3	TTLL3	3	9870857	Silent	SNP	G	TCGA-OR-A5L5-01A-11D-A29I-10		9870857	188151573	10	9333										
NR2C2	7182	bcgsc.ca	37	chr3	15046088	15046088	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.00884955752212389	1	1	0.235279399499583	0	0.300938766801792	1	1	0	ctgaacctgcctctggcccaTtgagtgttttcacatctttg	8	12	3	2	rs77813966	byfrequency	TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	NR2C2-226	NM_003298	exon3	c.T97C	p.L33L	GGCCCATTGAGTG	.	189	7	237	1	T|0.968;C|0.032	0	0	0	0	0	C	15046088	T	C	15046088	2	2	45	1	0	0	0	0	0	0	0	1	10652	1490	52	4		4	NR2C2	3	15046088	Silent	SNP	T	TCGA-OR-A5L5-01A-11D-A29I-10	5175231	15046088	182976342	11	9334										
PRSS42	339906	hgsc.bcm.edu	37	chr3	46875395	46875395	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.00884955752212389	1	1	0.235279399499583	0	0.300938766801792	1	1	0	gtgagtcacctggaaaggacGtaaacagattgagtgggggg	17	5	1	3	novel		TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	PRSS42-91	NM_182702	exon1	c.C191A	p.T64K	AAGGACGTAAACA	.	78	4	29	0	.	0	0	0	0	0	T	46875395	G	T	46875395	3	4	45	1	0	0	0	0	1	0	0	0	12660	1145	40	2	709	2	PRSS42	3	46875395	Missense_Mutation	SNP	G	TCGA-OR-A5L5-01A-11D-A29I-10	31829307	46875395	151147035	12	9335										
IQCF1	132141	bcgsc.ca	37	chr3	51930850	51930850	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.00884955752212389	1	1	0.235279399499583	0	0.300938766801792	1	1	0	tggtttgggaggtcatacttTttctgatttctcattggcat	10	6	3	1	rs57859638	byfrequency	TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	IQCF1-91	NM_152397	exon3	c.A169G	p.K57E	ATACTTTTTCTGA	.	99	6	107	0	T|0.851;C|0.149	0	0	0	0	0	C	51930850	T	C	51930850	3	2	45	1	0	0	0	0	1	0	0	0	7828	1850	64	4	456	4	IQCF1	3	51930850	Missense_Mutation	SNP	T	TCGA-OR-A5L5-01A-11D-A29I-10	5055455	51930850	146091580	13	9336										
PLXNA1	5361	hgsc.bcm.edu	37	chr3	126733053	126733053	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.00884955752212389	1	1	0.235279399499583	0	0.300938766801792	1	1	0	tacaagtgcccggccctgcgCgagagctgcggcctctgcct	13	16	1	1	rs11719489	byfrequency	TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	PLXNA1-93	NM_032242	exon11	c.C2439T	p.R813R	CCTGCGCGAGAGC	.	13	11	0	0	C|0.900;T|0.100	0	0	0	0	0	T	126733053	C	T	126733053	2	4	45	1	0	0	0	0	0	0	0	1	12148	755	27	1		1	PLXNA1	3	126733053	Silent	SNP	C	TCGA-OR-A5L5-01A-11D-A29I-10	74802203	126733053	71289377	14	9337										
KLHL24	54800	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	183388949	183388949	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.00884955752212389	1	1	0.235279399499583	0	0.300938766801792	1	1	0	gagttctcctgcagtgactaGctgtgtaggcaaactgtttg	12	8	1	1	novel		TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	KLHL24-91	NM_017644	exon6	c.G1352T	p.S451I	TGACTAGCTGTGT	.	218	37	231	1	.	9	7	2	0	0	T	183388949	G	T	183388949	3	4	45	1	0	0	0	0	1	0	0	0	8400	971	34	3	1366	3	KLHL24	3	183388949	Missense_Mutation	SNP	G	TCGA-OR-A5L5-01A-11D-A29I-10	56655896	183388949	14633481	15	9338										
OTOP1	133060	hgsc.bcm.edu	37	chr4	4228456	4228456	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.00884955752212389	1	1	0.235279399499583	0	0.300938766801792	1	1	0	gctggcgcgcacaccgccccGccggggggccggggattccg	18	17	0	0	rs73191872	bycluster;by1000genomes	TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	OTOP1-92	NM_177998	exon1	c.C136A	p.R46R	CGCCCCGCCGGGG	.	22	7	2	0	.	0	0	0	0	0	T	4228456	G	T	4228456	2	4	45	1	0	0	0	0	0	0	0	1	11334	1086	38	2		2	OTOP1	4	4228456	Silent	SNP	G	TCGA-OR-A5L5-01A-11D-A29I-10		4228456	186925820	16	9339										
WFS1	7466	bcgsc.ca	37	chr4	6302545	6302545	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.00884955752212389	1	1	0.235279399499583	0	0.300938766801792	1	1	0	aacctcaccatcgacttcttCgccttcttcatcccgctggt	5	17	4	0	rs56072215	byfrequency	TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	WFS1-91	NM_001145853	exon8	c.C1023T	p.F341F	CTTCTTCGCCTTC	.	344	8	355	1	C|0.951;T|0.049	14	14	0	0	0	T	6302545	C	T	6302545	2	4	45	1	0	0	0	0	0	0	0	1	17398	883	31	1		1	WFS1	4	6302545	Silent	SNP	C	TCGA-OR-A5L5-01A-11D-A29I-10	2074089	6302545	184851731	17	9340										
NKX3-2	579	hgsc.bcm.edu	37	chr4	13545716	13545716	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.00884955752212389	1	1	0.235279399499583	0	0.300938766801792	1	1	0	cgctggccccccgcgcgtccGcgcagcgccgcctgctctcg	13	22	1	0	rs202191746		TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	NKX3-2-68	NM_001189	exon1	c.C323G	p.A108G	GCGTCCGCGCAGC	.	13	8	0	0	G|0.998;C|0.002	0	0	0	0	0	C	13545716	G	C	13545716	3	2	45	1	0	0	0	0	1	0	0	0	10485	1087	38	2	686	2	NKX3-2	4	13545716	Missense_Mutation	SNP	G	TCGA-OR-A5L5-01A-11D-A29I-10	7243171	13545716	177608560	18	9341										
UBA6	55236	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	68510476	68510476	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.00884955752212389	1	1	0.235279399499583	0	0.300938766801792	1	1	0	aaatttttcaacatttcacaGcctatggctccacaccctac	3	14	2	0	novel		TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	UBA6-90	NM_018227	exon17	c.C1416A	p.G472G	TTCACAGCCTATG	.	183	23	194	0	.	2	1	1	0	0	T	68510476	G	T	68510476	2	4	45	1	0	0	0	0	0	0	0	1	16870	958	34	3		3	UBA6	4	68510476	Silent	SNP	G	TCGA-OR-A5L5-01A-11D-A29I-10	54964760	68510476	122643800	19	9342										
UGT2B11	10720	ucsc.edu	37	chr4	70066376	70066376	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.00884955752212389	1	1	0.235279399499583	0	0.300938766801792	1	1	0	aatccagaagactgctcgatCcaggggctttactggttgat	11	9	0	3	rs144149579	byfrequency	TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	UGT2B11-93	NM_001073	exon6	c.G1372C	p.D458H	CTCGATCCAGGGG	.	77	18	83	5	C|0.932;G|0.068	0	0	0	0	0	G	70066376	C	G	70066376	3	3	45	1	0	0	0	0	1	0	0	0	16995	855	30	3	221	3	UGT2B11	4	70066376	Missense_Mutation	SNP	C	TCGA-OR-A5L5-01A-11D-A29I-10	1555900	70066376	121087900	20	9343										
UGT2B11	10720	ucsc.edu	37	chr4	70066408	70066408	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.00884955752212389	1	1	0.235279399499583	0	0.300938766801792	1	1	0	ctggttgatcatgttgaattCttgataatttcataatattc	6	5	3	3	rs200919649		TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	UGT2B11-93	NM_001073	exon6	c.G1340T	p.R447I	TGAATTCTTGATA	.	55	10	61	2	.	0	0	0	0	0	A	70066408	C	A	70066408	3	1	45	1	0	0	0	0	1	0	0	0	16995	913	32	3	253	3	UGT2B11	4	70066408	Missense_Mutation	SNP	C	TCGA-OR-A5L5-01A-11D-A29I-10	32	70066408	121087868	21	9344										
ADAMTS16	170690	hgsc.bcm.edu	37	chr5	5140798	5140798	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.00884955752212389	1	1	0.235279399499583	0	0.300938766801792	1	1	0	cacctgcgtgcgccatgggaCccgcagcggcagcgcctggg	16	16	0	0	rs61754840		TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	ADAMTS16-275	NM_139056	exon2	c.C94T	p.P32S	ATGGGACCCGCAG	.	16	6	0	0	C|0.995;T|0.005	0	0	0	0	0	T	5140798	C	T	5140798	3	4	45	1	0	0	0	0	1	0	0	0	261	507	18	3	100	3	ADAMTS16	5	5140798	Missense_Mutation	SNP	C	TCGA-OR-A5L5-01A-11D-A29I-10		5140798	175774462	22	9345										
TRERF1	55809	broad.mit.edu	37	chr6	42236973	42236973	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.00884955752212389	1	1	0.235279399499583	0	0.300938766801792	1	1	0	gggagtaggtgtattggtagCcatcagtgggctcagcctgg	17	7	2	0	rs61756353	byfrequency	TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	TRERF1-230	NM_033502	exon5	c.G356A	p.G119D	TGGTAGCCATCAG	.	114	4	113	0	C|0.997;T|0.003	0	0	0	0	0	T	42236973	C	T	42236973	3	4	45	1	0	0	0	0	1	0	0	0	16513	739	26	3	3302	3	TRERF1	6	42236973	Missense_Mutation	SNP	C	TCGA-OR-A5L5-01A-11D-A29I-10		42236973	128878094	23	9346										
DST	667	bcgsc.ca	37	chr6	56327849	56327849	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.00884955752212389	1	1	0.235279399499583	0	0.300938766801792	1	1	0	ggggccttacaatacctctgCagatggcacgggaaagtctg	13	10	2	1	rs11758339	byfrequency	TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	DST-523	NM_015548	exon82	c.G15124A	p.A5042T	CCTCTGCAGATGG	.	127	6	100	1	C|0.788;T|0.212	1	1	0	0	0	T	56327849	C	T	56327849	3	4	45	1	0	0	0	0	1	0	0	0	4794	710	25	3	403	3	DST	6	56327849	Missense_Mutation	SNP	C	TCGA-OR-A5L5-01A-11D-A29I-10	14090876	56327849	114787218	24	9347										
DST	667	bcgsc.ca	37	chr6	56484758	56484758	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.00884955752212389	1	1	0.235279399499583	0	0.300938766801792	1	1	0	ttgagttcttctgctttctgCttgtcatgttcttgctggag	10	8	5	1	rs2230862	byfrequency	TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	DST-523	NM_001723	exon23	c.G4074A	p.K1358K	TTTCTGCTTGTCA	.	124	6	138	0	C|0.609;T|0.391	0	0	0	0	0	T	56484758	C	T	56484758	2	4	45	1	0	0	0	0	0	0	0	1	4794	796	28	3		3	DST	6	56484758	Silent	SNP	C	TCGA-OR-A5L5-01A-11D-A29I-10	156909	56484758	114630309	25	9348										
CTGF	1490	hgsc.bcm.edu	37	chr6	132271952	132271952	+	Missense_Mutation	SNP	G	G	C													0.00884955752212389	1	1	0.235279399499583	0	0.300938766801792	1	1	0	gttggccggggagccgaagtGacagaataggcccttgtgcg					rs7451102		TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	CTGF-90	NM_001901	exon2	c.C247G	p.H83D	CGAAGTGACAGAA	.	6	6	0	0	G|0.000;C|1.000	0	0	0	0	0	C	132271952	G	C	132271952	3	2	45	1	0	0	0	0	1	0	0	0	4014	1290	45	3	818	3	CTGF	6	132271952	Missense_Mutation	SNP	G	TCGA-OR-A5L5-01A-11D-A29I-10	75787194	132271952	38843115	26	9349	112	2								
CTGF	1490	hgsc.bcm.edu	37	chr6	132271959	132271959	+	Silent	SNP	T	T	G													0.00884955752212389	1	1	0.235279399499583	0	0.300938766801792	1	1	0	ggggagccgaagtgacagaaTaggcccttgtgcgggtcgca					rs12206231		TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	CTGF-90	NM_001901	exon2	c.A240C	p.L80L	ACAGAATAGGCCC	.	6	6	0	0	T|0.000;G|1.000	0	0	0	0	0	G	132271959	T	G	132271959	2	3	45	1	0	0	0	0	0	0	0	1	4014	1393	49	5		5	CTGF	6	132271959	Silent	SNP	T	TCGA-OR-A5L5-01A-11D-A29I-10	7	132271959	38843108	27	9350	112	2								
CTGF	1490	hgsc.bcm.edu	37	chr6	132271980	132271980	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.00884955752212389	1	1	0.235279399499583	0	0.300938766801792	1	1	0	aggcccttgtgcgggtcgcaTgggtcgcgctcggtgcacag	17	12	0	0	rs6934749		TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	CTGF-90	NM_001901	exon2	c.A219C	p.P73P	GTCGCATGGGTCG	.	4	4	0	0	T|0.000;G|1.000	7	0	7	0	0	G	132271980	T	G	132271980	2	3	45	1	0	0	0	0	0	0	0	1	4014	1451	51	5		5	CTGF	6	132271980	Silent	SNP	T	TCGA-OR-A5L5-01A-11D-A29I-10	21	132271980	38843087	28	9351										
MTRF1L	54516	hgsc.bcm.edu	37	chr6	153323806	153323806	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.00884955752212389	1	1	0.235279399499583	0	0.300938766801792	1	1	0	caccgggcagcgccccacagAacccgggaccgcatccttag	11	18	0	1	rs3818126	byfrequency	TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	MTRF1L-90	NM_019041	exon1	c.T15C	p.V5V	CCACAGAACCCGG	.	9	4	1	0	A|0.800;G|0.200	0	0	0	0	0	G	153323806	A	G	153323806	2	3	45	1	0	0	0	0	0	0	0	1	9988	233	9	4		4	MTRF1L	6	153323806	Silent	SNP	A	TCGA-OR-A5L5-01A-11D-A29I-10	21051826	153323806	17791261	29	9352										
TBP	6908	bcgsc.ca	37	chr6	170871094	170871094	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00884955752212389	1	1	0.235279399499583	0	0.300938766801792	1	1	0	cagcagcagcagcagcagcaGcagcagcagcaacaggcagt	13	13	0	0	novel		TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	TBP-91	NM_003194	exon3	c.G270A	p.Q90Q	GCAGCAGCAGCAG	.	102	9	48	0	.	78	75	2	0	1	A	170871094	G	A	170871094	2	1	45	1	0	0	0	0	0	0	0	1	15681	962	34	3		3	TBP	6	170871094	Silent	SNP	G	TCGA-OR-A5L5-01A-11D-A29I-10	17547288	170871094	243973	30	9353										
GARS	2617	hgsc.bcm.edu	37	chr7	30634661	30634661	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.00884955752212389	1	1	0.235279399499583	0	0.300938766801792	1	1	0	ccctcagcgcggcctcctgcCccccgatctccttgcccgcc	8	24	2	0	rs1049402	byfrequency	TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	GARS-91	NM_002047	exon1	c.C124G	p.P42A	TCCTGCCCCCCGA	.	6	5	0	0	C|0.329;G|0.671	2	1	1	0	0	G	30634661	C	G	30634661	3	3	45	1	0	0	0	0	1	0	0	0	6262	623	22	3	126	3	GARS	7	30634661	Missense_Mutation	SNP	C	TCGA-OR-A5L5-01A-11D-A29I-10		30634661	128504002	31	9354										
MYO1G	64005	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr7	45009379	45009387	+	In_Frame_Del	DEL	GCCAGCAGA	GCCAGCAGA	-													0.00884955752212389	1	1	0.235279399499583	0	0.300938766801792	1	1	0	aagattcggtcagtgatggtGccagcagagctgcaggcctc					novel		TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	GCCAGCAGA	GCCAGCAGA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	MYO1G-137	NM_033054	exon11	c.1420_1428del	p.474_476del	GATGGTGCCAGCA	.	126	38	77	0	.	0	0	0	0	0	-	45009387	GCCAGCAGA	-	45009379	7	5	45	1	0	1	0	1	0	0	0	0	10102	1306	46	0	1676	0	MYO1G	7	45009379	In_Frame_Del	DEL	GCCAGCAGA	TCGA-OR-A5L5-01A-11D-A29I-10	14374718	45009379	114129284	32	9355										
AUTS2	26053	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	70227999	70227999	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.00884955752212389	1	1	0.235279399499583	0	0.300938766801792	1	1	0	tctttgagcctgtggtgcttAaagacccctgccctcaggtc	10	13	2	2	novel		TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	AUTS2-92	NM_001127231	exon7	c.A886G	p.K296E	GTGCTTAAAGACC	.	106	57	101	1	.	0	0	0	0	0	G	70227999	A	G	70227999	3	3	45	1	0	0	0	0	1	0	0	0	1226	363	13	4	1057	4	AUTS2	7	70227999	Missense_Mutation	SNP	A	TCGA-OR-A5L5-01A-11D-A29I-10	25218620	70227999	88910664	33	9356										
STEAP1	26872	ucsc.edu	37	chr7	89790570	89790570	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.00884955752212389	1	1	0.235279399499583	0	0.300938766801792	1	1	0	tgtactgcatgcaatttataGtctgtcttacccaatgaggc	8	9	2	1	novel		TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	STEAP1-522	NM_012449	exon3	c.G536C	p.S179T	TTTATAGTCTGTC	.	117	16	126	3	.	2	2	0	0	0	C	89790570	G	C	89790570	3	2	45	1	0	0	0	0	1	0	0	0	15314	1029	36	3	542	3	STEAP1	7	89790570	Missense_Mutation	SNP	G	TCGA-OR-A5L5-01A-11D-A29I-10	19562571	89790570	69348093	34	9357										
LRCH4	4034	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	100175783	100175783	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.00884955752212389	1	1	0.235279399499583	0	0.300938766801792	1	1	0	atggacaggacgcccttaccTcatttccagaccacctcttg	7	15	2	1	novel		TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	LRCH4-136	NM_002319	exon7	c.A947T	p.E316V	CTTACCTCATTTC	.	124	12	111	0	.	13	6	7	0	0	A	100175783	T	A	100175783	3	1	45	1	0	0	0	0	1	0	0	0	8962	1565	54	5	1152	5	LRCH4	7	100175783	Missense_Mutation	SNP	T	TCGA-OR-A5L5-01A-11D-A29I-10	10385213	100175783	58962880	35	9358										
DGKI	9162	bcgsc.ca	37	chr7	137304602	137304602	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.00884955752212389	1	1	0.235279399499583	0	0.300938766801792	1	1	0	caccttaatgatccaagtggGcgggacaataacagcagcat	10	10	0	1	novel		TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	DGKI-228	NM_004717	exon8	c.C961A	p.P321T	AAGTGGGCGGGAC	.	59	4	73	0	.	0	0	0	0	0	T	137304602	G	T	137304602	3	4	45	1	0	0	0	0	1	0	0	0	4482	1203	42	3	2344	3	DGKI	7	137304602	Missense_Mutation	SNP	G	TCGA-OR-A5L5-01A-11D-A29I-10	37128819	137304602	21834061	36	9359										
NOM1	64434	hgsc.bcm.edu	37	chr7	156742501	156742501	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.00884955752212389	1	1	0.235279399499583	0	0.300938766801792	1	1	0	gacgcgtggtccgcatgaagCgcagaggcgggcgcgggccg	20	12	0	2	rs6969990	byfrequency	TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	NOM1-90	NM_138400	exon1	c.C70G	p.R24G	ATGAAGCGCAGAG	.	11	10	0	0	C|0.663;G|0.337	0	0	0	0	0	G	156742501	C	G	156742501	3	3	45	1	0	0	0	0	1	0	0	0	10559	768	27	2	72	2	NOM1	7	156742501	Missense_Mutation	SNP	C	TCGA-OR-A5L5-01A-11D-A29I-10	19437899	156742501	2396162	37	9360										
UBE3C	9690	hgsc.bcm.edu	37	chr7	157013436	157013436	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.00884955752212389	1	1	0.235279399499583	0	0.300938766801792	1	1	0	gtgtggaggttccggcggatGgggaggataggcccgctgca	20	8	0	0	novel		TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	UBE3C-704	NM_014671	exon15	c.G1968T	p.M656I	GCGGATGGGGAGG	.	66	4	66	0	.	1	1	0	0	0	T	157013436	G	T	157013436	3	4	45	1	0	0	0	0	1	0	0	0	16919	1348	47	3	2026	3	UBE3C	7	157013436	Missense_Mutation	SNP	G	TCGA-OR-A5L5-01A-11D-A29I-10	270935	157013436	2125227	38	9361										
GPR124	25960	broad.mit.edu	37	chr8	37698805	37698805	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.00884955752212389	1	1	0.235279399499583	0	0.300938766801792	1	1	0	accaggctcaggggcagcggCcccctcctgagtgactcagg	14	15	2	2	novel		TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	GPR124-157	NM_032777	exon19	c.C2949A	p.G983G	CAGCGGCCCCCTC	.	49	6	24	0	.	2	2	0	0	0	A	37698805	C	A	37698805	2	1	45	1	0	0	0	0	0	0	0	1	6658	726	26	3		3	GPR124	8	37698805	Silent	SNP	C	TCGA-OR-A5L5-01A-11D-A29I-10		37698805	108665217	39	9362										
GPR124	25960	hgsc.bcm.edu	37	chr8	37699516	37699516	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.00884955752212389	1	1	0.235279399499583	0	0.300938766801792	1	1	0	ctgctgtccagcgagagcggCagtctgcacaacagccccac	11	16	1	1	rs7010546	byfrequency	TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	GPR124-157	NM_032777	exon19	c.C3660T	p.G1220G	GAGCGGCAGTCTG	.	5	5	0	0	C|0.479;G|0.000;T|0.520	0	0	0	0	0	T	37699516	C	T	37699516	2	4	45	1	0	0	0	0	0	0	0	1	6658	697	25	3		3	GPR124	8	37699516	Silent	SNP	C	TCGA-OR-A5L5-01A-11D-A29I-10	711	37699516	108664506	40	9363										
EPPK1	83481	hgsc.bcm.edu	37	chr8	144940543	144940543	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00884955752212389	1	1	0.235279399499583	0	0.300938766801792	1	1	0	agcttctcctggatctcgccGcccaccacgcccgcggccac	9	21	2	0	novel		TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	EPPK1-25	NM_031308	exon1	c.C6879T	p.G2293G	CTCGCCGCCCACC	.	111	13	5	0	.	0	0	0	0	0	A	144940543	G	A	144940543	2	1	45	1	0	0	0	0	0	0	0	1	5203	1074	38	1		1	EPPK1	8	144940543	Silent	SNP	G	TCGA-OR-A5L5-01A-11D-A29I-10	107241027	144940543	1423479	41	9364										
DMRT1	1761	hgsc.bcm.edu	37	chr9	841971	841971	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.00884955752212389	1	1	0.235279399499583	0	0.300938766801792	1	1	0	tagtgggggcggccagcggcTcgagcgccgggggcagcagc	21	12	0	0	rs3739583	byfrequency	TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	DMRT1-515	NM_021951	exon1	c.T133A	p.S45T	AGCGGCTCGAGCG	.	8	6	1	0	T|0.317;A|0.683	0	0	0	0	0	A	841971	T	A	841971	3	1	45	1	0	0	0	0	1	0	0	0	4596	1551	54	5	135	5	DMRT1	9	841971	Missense_Mutation	SNP	T	TCGA-OR-A5L5-01A-11D-A29I-10		841971	140371460	42	9365										
UBAP2	55833	bcgsc.ca	37	chr9	33941759	33941759	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.00884955752212389	1	1	0.235279399499583	0	0.300938766801792	1	1	0	ttgctactggactagcagaaTtcagtgatgagcttgtcaga	11	7	2	4	rs307658	byfrequency	TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	UBAP2-94	NM_018449	exon16	c.A1817G	p.N606S	GCAGAATTCAGTG	.	145	5	163	0	T|0.481;G|0.077	1	1	0	0	0	C	33941759	T	C	33941759	3	2	45	1	0	0	0	0	1	0	0	0	16875	1493	52	4	1598	4	UBAP2	9	33941759	Missense_Mutation	SNP	T	TCGA-OR-A5L5-01A-11D-A29I-10	33099788	33941759	107271672	43	9366										
FGD3	89846	bcgsc.ca	37	chr9	95738781	95738781	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.00884955752212389	1	1	0.235279399499583	0	0.300938766801792	1	1	0	gacagcgggatcgacagtccCtcctccagtgtggctggaga	14	12	0	1	rs3802381	byfrequency	TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	FGD3-228	NM_001083536	exon3	c.C243A	p.P81P	CAGTCCCTCCTCC	.	168	6	108	2	C|0.385;A|0.615	0	0	0	0	0	A	95738781	C	A	95738781	2	1	45	1	0	0	0	0	0	0	0	1	5853	668	24	3		3	FGD3	9	95738781	Silent	SNP	C	TCGA-OR-A5L5-01A-11D-A29I-10	61797022	95738781	45474650	44	9367										
PTPDC1	138639	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	96846961	96846961	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.00884955752212389	1	1	0.235279399499583	0	0.300938766801792	1	1	0	gggctccggctctgccacgaAgctgctgtcctcgtcctctc	11	17	2	0	novel		TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	PTPDC1-227	NM_152422	exon1	c.A149T	p.K50M	CCACGAAGCTGCT	.	124	18	57	0	.	0	0	0	0	0	T	96846961	A	T	96846961	3	4	45	1	0	0	0	0	1	0	0	0	12806	72	3	5	237	5	PTPDC1	9	96846961	Missense_Mutation	SNP	A	TCGA-OR-A5L5-01A-11D-A29I-10	1108180	96846961	44366470	45	9368										
LHX3	8022	hgsc.bcm.edu	37	chr9	139096812	139096812	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00884955752212389	1	1	0.235279399499583	0	0.300938766801792	1	1	0	ccaaggtgcagacggcggcgGccccgggcctcgctcggtcg	17	16	0	1	novel		TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	LHX3-91	NM_178138	exon1	c.C47T	p.A16V	GCGGCGGCCCCGG	.	42	33	0	0	.	0	0	0	0	0	A	139096812	G	A	139096812	3	1	45	1	0	0	0	0	1	0	0	0	8795	1203	42	3	1268	3	LHX3	9	139096812	Missense_Mutation	SNP	G	TCGA-OR-A5L5-01A-11D-A29I-10	42249851	139096812	2116619	46	9369										
ECHDC3	79746	bcgsc.ca	37	chr10	11805249	11805249	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.00884955752212389	1	1	0.235279399499583	0	0.300938766801792	1	1	0	ttggagatgctctttactggTgagcccatttctgcccagga	11	10	2	2	rs61739577	byfrequency	TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	ECHDC3-90	NM_024693	exon5	c.T618C	p.G206G	TACTGGTGAGCCC	.	69	4	56	0	T|0.807;C|0.193	32	31	0	0	1	C	11805249	T	C	11805249	2	2	45	1	0	0	0	0	0	0	0	1	4906	1683	59	4		4	ECHDC3	10	11805249	Silent	SNP	T	TCGA-OR-A5L5-01A-11D-A29I-10		11805249	123729498	47	9370										
TBC1D12	23232	hgsc.bcm.edu	37	chr10	96163039	96163039	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.00884955752212389	1	1	0.235279399499583	0	0.300938766801792	1	1	0	agcgactcgggggacagcccCgccagcagctgcagcagtag	15	14	0	0	rs2477534	byfrequency	TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	TBC1D12-68	NM_015188	exon1	c.C669G	p.P223P	CAGCCCCGCCAGC	.	8	8	0	0	C|0.339;G|0.661	0	0	0	0	0	G	96163039	C	G	96163039	2	3	45	1	0	0	0	0	0	0	0	1	15638	639	23	2		2	TBC1D12	10	96163039	Silent	SNP	C	TCGA-OR-A5L5-01A-11D-A29I-10	84357790	96163039	39371708	48	9371										
PIK3AP1	118788	bcgsc.ca	37	chr10	98380277	98380277	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.00884955752212389	1	1	0.235279399499583	0	0.300938766801792	1	1	0	gcaaaagggtcatatatactCgactggggcctgtccctcca	10	12	1	0	rs3748234	byfrequency	TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	PIK3AP1-519	NM_152309	exon12	c.G1773A	p.S591S	TATACTCGACTGG	.	113	5	128	1	C|0.452;T|0.548	0	0	0	0	0	T	98380277	C	T	98380277	2	4	45	1	0	0	0	0	0	0	0	1	11937	871	31	1		1	PIK3AP1	10	98380277	Silent	SNP	C	TCGA-OR-A5L5-01A-11D-A29I-10	2217238	98380277	37154470	49	9372										
RRP12	23223	bcgsc.ca	37	chr10	99160152	99160152	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.00884955752212389	1	1	0.235279399499583	0	0.300938766801792	1	1	0	gaaaggccactcaggaaggtAcccgaggacttctcggtgag	14	10	2	1	rs1048442	byfrequency	TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	RRP12-92	NM_001145114	exon2	c.T279C	p.G93G	GAAGGTACCCGAG	.	115	7	146	1	A|0.622;G|0.378	1	1	0	0	0	G	99160152	A	G	99160152	2	3	45	1	0	0	0	0	0	0	0	1	13721	378	14	4		4	RRP12	10	99160152	Silent	SNP	A	TCGA-OR-A5L5-01A-11D-A29I-10	779875	99160152	36374595	50	9373										
NFKB2	4791	hgsc.bcm.edu	37	chr10	104159196	104159196	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.00884955752212389	1	1	0.235279399499583	0	0.300938766801792	1	1	0	ggggaggaagccgcggagccAagcgccccctccaggacccc	15	17	0	0	rs4919633	byfrequency	TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	NFKB2-522	NM_001077494	exon13	c.A1269G	p.P423P	GGAGCCAAGCGCC	.	7	7	0	0	A|0.009;G|0.991	1	0	1	0	0	G	104159196	A	G	104159196	2	3	45	1	0	0	0	0	0	0	0	1	10405	117	5	4		4	NFKB2	10	104159196	Silent	SNP	A	TCGA-OR-A5L5-01A-11D-A29I-10	4999044	104159196	31375551	51	9374										
LHPP	64077	hgsc.bcm.edu	37	chr10	126150523	126150523	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.00884955752212389	1	1	0.235279399499583	0	0.300938766801792	1	1	0	cagcggcgcgggcggcggcaCggccatcgccggctcggtgg	20	15	0	0	rs75426652		TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	LHPP-90	NM_022126	exon1	c.C92A	p.T31K	GCGGCACGGCCAT	.	6	6	0	0	C|0.919;A|0.081	2	0	2	0	0	A	126150523	C	A	126150523	3	1	45	1	0	0	0	0	1	0	0	0	8792	536	19	2	94	2	LHPP	10	126150523	Missense_Mutation	SNP	C	TCGA-OR-A5L5-01A-11D-A29I-10	21991327	126150523	9384224	52	9375										
CTBP2	1488	bcgsc.ca	37	chr10	126678148	126678148	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.00884955752212389	1	1	0.235279399499583	0	0.300938766801792	1	1	0	tgggctggttgggagagggcGcttgggaaggatgtgccact	20	6	0	1	rs146419230	alternate_allele	TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	CTBP2-90	NM_022802	exon9	c.C2897A	p.A966E	GAGGGCGCTTGGG	.	47	4	44	0	.	20	20	0	0	0	T	126678148	G	T	126678148	3	4	45	1	0	0	0	0	1	0	0	0	4004	1087	38	2	64	2	CTBP2	10	126678148	Missense_Mutation	SNP	G	TCGA-OR-A5L5-01A-11D-A29I-10	527625	126678148	8856599	53	9376										
FANK1	92565	hgsc.bcm.edu	37	chr10	127585221	127585221	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.00884955752212389	1	1	0.235279399499583	0	0.300938766801792	1	1	0	agcagccgaccatggagcccCagagtaagggaggcccgggc	16	13	0	1	rs202109621		TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	FANK1-91	NM_145235	exon1	c.C10T	p.Q4X	GAGCCCCAGAGTA	.	88	6	2	0	.	0	0	0	0	0	T	127585221	C	T	127585221	4	4	45	1	0	0	0	0	0	1	0	0	5691	595	21	3	12	3	FANK1	10	127585221	Nonsense_Mutation	SNP	C	TCGA-OR-A5L5-01A-11D-A29I-10	907073	127585221	7949526	54	9377										
PWWP2B	170394	hgsc.bcm.edu	37	chr10	134219045	134219045	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.00884955752212389	1	1	0.235279399499583	0	0.300938766801792	1	1	0	ggggacagcgagcacgagccCgtgtaccgggccgagctggt	18	12	0	0	rs11146364	byfrequency	TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	PWWP2B-90	NM_001098637	exon2	c.C1041T	p.P347P	CGAGCCCGTGTAC	.	5	5	0	0	C|0.860;T|0.140	1	1	0	0	0	T	134219045	C	T	134219045	2	4	45	1	0	0	0	0	0	0	0	1	12881	639	23	1		1	PWWP2B	10	134219045	Silent	SNP	C	TCGA-OR-A5L5-01A-11D-A29I-10	6633824	134219045	1315702	55	9378										
MUC5B	727897	bcgsc.ca	37	chr11	1264691	1264691	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.00884955752212389	1	1	0.235279399499583	0	0.300938766801792	1	1	0	acccccagtgccgaacaccaTggccaccacacacgggcgat	9	18	0	0	rs2943502	byfrequency	TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	.	NM_002458	exon31	c.T6581C	p.M2194T	ACACCATGGCCAC	.	263	55	136	3	T|0.408;C|0.592	0	0	0	0	0	C	1264691	T	C	1264691	3	2	45	1	0	0	0	0	1	0	0	0	10007	1464	51	4	6712	4	MUC5B	11	1264691	Missense_Mutation	SNP	T	TCGA-OR-A5L5-01A-11D-A29I-10		1264691	133741825	56	9379										
KRTAP5-4	387267	hgsc.bcm.edu;bcgsc.ca	37	chr11	1643258	1643258	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.00884955752212389	1	1	0.235279399499583	0	0.300938766801792	1	1	0	ccacagccagagccacagccCccacagccggagccacagcc	9	21	0	1	rs28696103		TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	.	NM_001012709	exon1	c.G66A	p.G22G	ACAGCCCCCACAG	.	245	25	66	0	.	0	0	0	0	0	T	1643258	C	T	1643258	2	4	45	1	0	0	0	0	0	0	0	1	8585	610	22	3		3	KRTAP5-4	11	1643258	Silent	SNP	C	TCGA-OR-A5L5-01A-11D-A29I-10	378567	1643258	133363258	57	9380										
OR52B6	340980	bcgsc.ca	37	chr11	5602438	5602438	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.00884955752212389	1	1	0.235279399499583	0	0.300938766801792	1	1	0	tttgtggctaggttatagccTcatttcctttgatggctgcc	10	9	1	1	rs2341432	byfrequency	TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	OR52B6-69	NM_001005162	exon1	c.T332A	p.L111H	ATAGCCTCATTTC	.	203	8	220	0	T|0.358;A|0.642	0	0	0	0	0	A	5602438	T	A	5602438	3	1	45	1	0	0	0	0	1	0	0	0	11142	1551	54	5	334	5	OR52B6	11	5602438	Missense_Mutation	SNP	T	TCGA-OR-A5L5-01A-11D-A29I-10	3959180	5602438	129404078	58	9381										
HNRNPUL2	221092	hgsc.bcm.edu	37	chr11	62494434	62494434	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00884955752212389	1	1	0.235279399499583	0	0.300938766801792	1	1	0	cccgggccgccgcccgacgcGgccacaggccgaggctccgc	15	21	0	0	novel		TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	HNRNPUL2-22	NM_001079559	exon1	c.C195T	p.A65A	CGACGCGGCCACA	.	4	4	0	0	.	0	0	0	0	0	A	62494434	G	A	62494434	2	1	45	1	0	0	0	0	0	0	0	1	7296	1103	39	1		1	HNRNPUL2	11	62494434	Silent	SNP	G	TCGA-OR-A5L5-01A-11D-A29I-10	56891996	62494434	72512082	59	9382										
VEGFB	7423	hgsc.bcm.edu	37	chr11	64005029	64005029	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.00884955752212389	1	1	0.235279399499583	0	0.300938766801792	1	1	0	ccacgctgcacccagcaccaCcagcgccctgacccccggac	8	23	0	1	novel		TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	VEGFB-90	NM_003377	exon6	c.C548T	p.T183I	GCACCACCAGCGC	.	21	17	2	0	.	223	19	204	0	0	T	64005029	C	T	64005029	3	4	45	1	0	0	0	0	1	0	0	0	17189	507	18	3	570	3	VEGFB	11	64005029	Missense_Mutation	SNP	C	TCGA-OR-A5L5-01A-11D-A29I-10	1510595	64005029	71001487	60	9383										
ZDHHC24	254359	bcgsc.ca	37	chr11	66307025	66307025	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.00884955752212389	1	1	0.235279399499583	0	0.300938766801792	1	1	0	aggctgtgtgtcccacatctGctgtggtctggaaggtgatc	14	9	2	1	novel		TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	ZDHHC24-68	NM_207340	exon3	c.C830A	p.A277E	ACATCTGCTGTGG	.	59	4	48	0	.	46	46	0	0	0	T	66307025	G	T	66307025	3	4	45	1	0	0	0	0	1	0	0	0	17652	1319	46	3	28	3	ZDHHC24	11	66307025	Missense_Mutation	SNP	G	TCGA-OR-A5L5-01A-11D-A29I-10	2301996	66307025	68699491	61	9384										
PC	5091	broad.mit.edu	37	chr11	66631380	66631380	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00884955752212389	1	1	0.235279399499583	0	0.300938766801792	1	1	0	atgacggctccttggaaggcGgaagcattatccaggcggat	14	9	0	1	novel		TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	PC-228	NM_000920	exon11	c.C1233T	p.S411S	GAAGGCGGAAGCA	.	158	5	100	1	.	9	9	0	0	0	A	66631380	G	A	66631380	2	1	45	1	0	0	0	0	0	0	0	1	11526	1103	39	1		1	PC	11	66631380	Silent	SNP	G	TCGA-OR-A5L5-01A-11D-A29I-10	324355	66631380	68375136	62	9385										
RSF1	51773	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	77412599	77412599	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.00884955752212389	1	1	0.235279399499583	0	0.300938766801792	1	1	0	tttcatggtacacgactcggTggaagataaagcagtttttg	11	6	1	1	novel		TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	RSF1-93	NM_016578	exon6	c.A1675G	p.T559A	ACTCGGTGGAAGA	.	69	28	66	0	.	5	2	3	0	0	C	77412599	T	C	77412599	3	2	45	1	0	0	0	0	1	0	0	0	13734	1696	59	4	2694	4	RSF1	11	77412599	Missense_Mutation	SNP	T	TCGA-OR-A5L5-01A-11D-A29I-10	10781219	77412599	57593917	63	9386										
FAM181B	220382	hgsc.bcm.edu	37	chr11	82443754	82443754	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00884955752212389	1	1	0.235279399499583	0	0.300938766801792	1	1	0	caaggtcaagccgccgcgggGggcagtcagggggctctttt	17	11	3	0	rs147683846		TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	FAM181B-135	NM_175885	exon1	c.C1018T	p.P340S	CGCGGGGGGCAGT	.	11	7	0	0	G|0.982;A|0.018	2	1	1	0	0	A	82443754	G	A	82443754	3	1	45	1	0	0	0	0	1	0	0	0	5525	1232	43	3	266	3	FAM181B	11	82443754	Missense_Mutation	SNP	G	TCGA-OR-A5L5-01A-11D-A29I-10	5031155	82443754	52562762	64	9387										
TMPRSS5	80975	bcgsc.ca	37	chr11	113570385	113570385	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.00884955752212389	1	1	0.235279399499583	0	0.300938766801792	1	1	0	ccagcactgcacagccacgtCgcatggaacgccagcacact	9	17	0	0	rs11601425	byfrequency	TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	TMPRSS5-1	NM_030770	exon3	c.G137A	p.R46Q	CCACGTCGCATGG	.	316	9	210	2	C|0.946;T|0.054	0	0	0	0	0	T	113570385	C	T	113570385	3	4	45	1	0	0	0	0	1	0	0	0	16287	884	31	1	1280	1	TMPRSS5	11	113570385	Missense_Mutation	SNP	C	TCGA-OR-A5L5-01A-11D-A29I-10	31126631	113570385	21436131	65	9388										
TAPBPL	55080	bcgsc.ca	37	chr12	6562823	6562823	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.00884955752212389	1	1	0.235279399499583	0	0.300938766801792	1	1	0	cagggtcaccaagaatgaggCgctctggcacccgacgctga	13	13	2	3	rs2041387	byfrequency	TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	TAPBPL-90	NM_018009	exon3	c.C506T	p.A169V	ATGAGGCGCTCTG	.	136	6	93	0	C|0.744;N|0.000	17	17	0	0	0	T	6562823	C	T	6562823	3	4	45	1	0	0	0	0	1	0	0	0	15590	768	27	1	516	1	TAPBPL	12	6562823	Missense_Mutation	SNP	C	TCGA-OR-A5L5-01A-11D-A29I-10		6562823	127289072	66	9389			1	46		2	2	14	N	G_C	4.745223e-05
TAPBPL	55080	bcgsc.ca	37	chr12	6562836	6562836	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.00884955752212389	1	1	0.235279399499583	0	0.300938766801792	1	1	0	aatgaggcgctctggcacccGacgctgaacttgccactgag	12	13	1	3	rs2041388	byfrequency	TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	TAPBPL-90	NM_018009	exon3	c.G519A	p.P173P	GCACCCGACGCTG	.	124	6	81	0	G|0.800;A|0.200	18	18	0	0	0	A	6562836	G	A	6562836	2	1	45	1	0	0	0	0	0	0	0	1	15590	1045	37	1		1	TAPBPL	12	6562836	Silent	SNP	G	TCGA-OR-A5L5-01A-11D-A29I-10	13	6562836	127289059	67	9390			1	46		2	2	14	N	G_C	4.745223e-05
ZNF384	171017	hgsc.bcm.edu	37	chr12	6777075	6777075	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.00884955752212389	1	1	0.235279399499583	0	0.300938766801792	1	1	0	tgtggtggtggctgttgctgCtgctgctgctgctgctgctg	17	9	0	0	rs1052680	alternate_allele	TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	ZNF384-1083	NM_001135734	exon11	c.G1539A	p.Q513Q	TTGCTGCTGCTGC	.	63	4	17	0	C|1.000;|0.000	18	18	0	0	0	T	6777075	C	T	6777075	2	4	45	1	0	0	0	0	0	0	0	1	17912	796	28	3		3	ZNF384	12	6777075	Silent	SNP	C	TCGA-OR-A5L5-01A-11D-A29I-10	214239	6777075	127074820	68	9391										
FAM90A1	55138	ucsc.edu	37	chr12	8375048	8375048	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.00884955752212389	1	1	0.235279399499583	0	0.300938766801792	1	1	0	cgtttgtcttgtgcctggggGctgacggcctggagcaggcc	17	11	1	1	rs17857270	byfrequency	TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	FAM90A1-91	NM_018088	exon7	c.C765A	p.S255R	CTGGGGGCTGACG	.	77	8	11	0	G|0.859;T|0.141	1	0	1	0	0	T	8375048	G	T	8375048	3	4	45	1	0	0	0	0	1	0	0	0	5669	1194	42	3	633	3	FAM90A1	12	8375048	Missense_Mutation	SNP	G	TCGA-OR-A5L5-01A-11D-A29I-10	1597973	8375048	125476847	69	9392										
KRT83	3889	broad.mit.edu	37	chr12	52709845	52709845	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.00884955752212389	1	1	0.235279399499583	0	0.300938766801792	1	1	0	tgcagcgggcatcactgaggGccgcctcaccctgctgctca	12	16	3	1	novel		TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	KRT83-91	NM_002282	exon7	c.C1094A	p.A365D	CTGAGGGCCGCCT	.	138	17	26	3	.	0	0	0	0	0	T	52709845	G	T	52709845	3	4	45	1	0	0	0	0	1	0	0	0	8518	1203	42	3	399	3	KRT83	12	52709845	Missense_Mutation	SNP	G	TCGA-OR-A5L5-01A-11D-A29I-10	44334797	52709845	81142050	70	9393										
BTBD11	121551	hgsc.bcm.edu	37	chr12	107713511	107713511	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.00884955752212389	1	1	0.235279399499583	0	0.300938766801792	1	1	0	ccggagctgcagtggccctgGgtcaggctcgggctccggcc	17	15	1	0	rs961498	byfrequency	TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	BTBD11-93	NM_001018072	exon1	c.G794C	p.G265A	GCCCTGGGTCAGG	.	4	4	0	0	G|0.588;C|0.412	0	0	0	0	0	C	107713511	G	C	107713511	3	2	45	1	0	0	0	0	1	0	0	0	1542	1232	43	3	796	3	BTBD11	12	107713511	Missense_Mutation	SNP	G	TCGA-OR-A5L5-01A-11D-A29I-10	55003666	107713511	26138384	71	9394										
SRRM4	84530	hgsc.bcm.edu	37	chr12	119594512	119594512	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.00884955752212389	1	1	0.235279399499583	0	0.300938766801792	1	1	0	tagtccgggctcccgcagccGgagccggagcaggagccgga	17	14	0	0	rs140426282		TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	SRRM4-2	NM_194286	exon13	c.G1745C	p.R582P	GCAGCCGGAGCCG	.	15	5	1	0	G|0.989;C|0.011	0	0	0	0	0	C	119594512	G	C	119594512	3	2	45	1	0	0	0	0	1	0	0	0	15208	1116	39	2	1795	2	SRRM4	12	119594512	Missense_Mutation	SNP	G	TCGA-OR-A5L5-01A-11D-A29I-10	11881001	119594512	14257383	72	9395										
SCARB1	949	hgsc.bcm.edu	37	chr12	125348263	125348263	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.00884955752212389	1	1	0.235279399499583	0	0.300938766801792	1	1	0	gcgcgctttggcggagcagcCcatgtctgcgcgcctggggc	17	14	1	0	rs4238001	byfrequency	TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	SCARB1-226	NM_005505	exon1	c.G4A	p.G2S	AGCAGCCCATGTC	.	10	6	0	0	C|0.935;T|0.065	40	13	27	0	0	T	125348263	C	T	125348263	3	4	45	1	0	0	0	0	1	0	0	0	13916	623	22	3	1697	3	SCARB1	12	125348263	Missense_Mutation	SNP	C	TCGA-OR-A5L5-01A-11D-A29I-10	5753751	125348263	8503632	73	9396										
MYH6	4624	broad.mit.edu	37	chr14	23862646	23862646	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.00884955752212389	1	1	0.235279399499583	0	0.300938766801792	1	1	0	atccagggcctgctgatgggCctcttgtagagctttcttct	11	11	3	2	rs143978652	byfrequency	TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	MYH6-94	NM_002471	exon23	c.G3010T	p.A1004S	GATGGGCCTCTTG	.	192	8	168	0	C|0.999;A|0.001	0	0	0	0	0	A	23862646	C	A	23862646	3	1	45	1	0	0	0	0	1	0	0	0	10066	739	26	3	2877	3	MYH6	14	23862646	Missense_Mutation	SNP	C	TCGA-OR-A5L5-01A-11D-A29I-10		23862646	83486894	74	9397										
DHRS4	10901	ucsc.edu	37	chr14	24424289	24424289	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.00884955752212389	1	1	0.235279399499583	0	0.300938766801792	1	1	0	ttggcccaggacggggcccaTgtggtcgtcagcagccggaa	16	12	1	0	rs1127279		TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	DHRS4-91	NM_021004	exon2	c.T174C	p.H58H	GGCCCATGTGGTC	.	368	110	82	3	.	46	46	0	0	0	C	24424289	T	C	24424289	2	2	45	1	0	0	0	0	0	0	0	1	4503	1461	51	4		4	DHRS4	14	24424289	Silent	SNP	T	TCGA-OR-A5L5-01A-11D-A29I-10	561643	24424289	82925251	75	9398										
PLEKHG3	26030	hgsc.bcm.edu	37	chr14	65209970	65209970	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00884955752212389	1	1	0.235279399499583	0	0.300938766801792	1	1	0	acgccgagcagggggcggccGgccccgcggcccacccgtca	16	19	1	0	rs201046500		TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	PLEKHG3-91	NM_015549	exon15	c.G3041A	p.R1014Q	GCGGCCGGCCCCG	.	21	10	1	0	G|0.996;A|0.004	0	0	0	0	0	A	65209970	G	A	65209970	3	1	45	1	0	0	0	0	1	0	0	0	12099	1116	39	1	3095	1	PLEKHG3	14	65209970	Missense_Mutation	SNP	G	TCGA-OR-A5L5-01A-11D-A29I-10	40785681	65209970	42139570	76	9399										
MAGEL2	54551	broad.mit.edu	37	chr15	23889708	23889708	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.00884955752212389	1	1	0.235279399499583	0	0.300938766801792	1	1	0	tattgttggcacggttgatgAtatctaagcactcatcttta	8	7	3	2	novel		TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	.	NM_019066	exon1	c.T3182A	p.I1061N	TTGATGATATCTA	.	164	4	190	0	.	0	0	0	0	0	T	23889708	A	T	23889708	3	4	45	1	0	0	0	0	1	0	0	0	9217	333	12	5	571	5	MAGEL2	15	23889708	Missense_Mutation	SNP	A	TCGA-OR-A5L5-01A-11D-A29I-10		23889708	78641684	77	9400										
LACTB	114294	hgsc.bcm.edu	37	chr15	63414083	63414083	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.00884955752212389	1	1	0.235279399499583	0	0.300938766801792	1	1	0	gagacgccatgtaccggctcAtgtcagcagtgactgcccgg	13	13	2	2	rs34317102	byfrequency	TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	LACTB-90	NM_171846	exon1	c.A13C	p.M5L	CGGCTCATGTCAG	.	10	10	0	0	A|0.226;C|0.774	0	0	0	0	0	C	63414083	A	C	63414083	3	2	45	1	0	0	0	0	1	0	0	0	8619	217	8	5	15	5	LACTB	15	63414083	Missense_Mutation	SNP	A	TCGA-OR-A5L5-01A-11D-A29I-10	39524375	63414083	39117309	78	9401										
KBTBD13	390594	hgsc.bcm.edu	37	chr15	65369395	65369395	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.00884955752212389	1	1	0.235279399499583	0	0.300938766801792	1	1	0	ggaggacgagctgctgcaggCcgtggagtgcgccgccttcc	17	13	0	0	rs2919358	byfrequency	TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	.	NM_001101362	exon1	c.C242T	p.A81V	TGCAGGCCGTGGA	.	8	8	0	0	C|0.452;T|0.548	0	0	0	0	0	T	65369395	C	T	65369395	3	4	45	1	0	0	0	0	1	0	0	0	8013	739	26	3	244	3	KBTBD13	15	65369395	Missense_Mutation	SNP	C	TCGA-OR-A5L5-01A-11D-A29I-10	1955312	65369395	37161997	79	9402										
KBTBD13	390594	hgsc.bcm.edu	37	chr15	65369531	65369531	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.00884955752212389	1	1	0.235279399499583	0	0.300938766801792	1	1	0	gacgtgttccacagtgccgcGctcttcatctgcgacggcga	12	14	3	0	rs2946642	byfrequency	TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	.	NM_001101362	exon1	c.G378T	p.A126A	TGCCGCGCTCTTC	.	7	6	0	0	G|0.479;T|0.521	0	0	0	0	0	T	65369531	G	T	65369531	2	4	45	1	0	0	0	0	0	0	0	1	8013	1074	38	2		2	KBTBD13	15	65369531	Silent	SNP	G	TCGA-OR-A5L5-01A-11D-A29I-10	136	65369531	37161861	80	9403										
CHRNB4	1143	bcgsc.ca	37	chr15	78921762	78921762	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.00884955752212389	1	1	0.235279399499583	0	0.300938766801792	1	1	0	gtgaacatgaggtacttgccGatgagaggcacatcgaggga	15	7	0	3	rs3743072	byfrequency	TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	CHRNB4-90	NM_000750	exon5	c.C885T	p.I295I	CTTGCCGATGAGA	.	237	9	237	3	G|0.962;A|0.038	0	0	0	0	0	A	78921762	G	A	78921762	2	1	45	1	0	0	0	0	0	0	0	1	3399	1048	37	1		1	CHRNB4	15	78921762	Silent	SNP	G	TCGA-OR-A5L5-01A-11D-A29I-10	13552231	78921762	23609630	81	9404										
ADAMTS7	11173	ucsc.edu	37	chr15	79089111	79089111	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.00884955752212389	1	1	0.235279399499583	0	0.300938766801792	1	1	0	ctcccaacgctcccgtcgagActccagctctgggtacactg	9	17	1	1	rs3825807	byfrequency	TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	ADAMTS7-226	NM_014272	exon4	c.T640C	p.S214P	GTCGAGACTCCAG	.	50	12	10	0	A|0.704;G|0.296	0	0	0	0	0	G	79089111	A	G	79089111	3	3	45	1	0	0	0	0	1	0	0	0	271	275	10	4	4504	4	ADAMTS7	15	79089111	Missense_Mutation	SNP	A	TCGA-OR-A5L5-01A-11D-A29I-10	167349	79089111	23442281	82	9405										
MRPS34	65993	hgsc.bcm.edu	37	chr16	1823054	1823054	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.00884955752212389	1	1	0.235279399499583	0	0.300938766801792	1	1	0	gcgcggcctgttcagttgctCccgcagggcgcgcacgcggc	16	16	1	0	rs11552432		TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	MRPS34-92	NM_023936	exon1	c.G67C	p.E23Q	GTTGCTCCCGCAG	.	12	6	1	0	C|0.014;G|0.986	7	3	4	0	0	G	1823054	C	G	1823054	3	3	45	1	0	0	0	0	1	0	0	0	9871	864	30	3	601	3	MRPS34	16	1823054	Missense_Mutation	SNP	C	TCGA-OR-A5L5-01A-11D-A29I-10		1823054	88531699	83	9406										
EME2	197342	hgsc.bcm.edu	37	chr16	1823444	1823444	+	Silent	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.00884955752212389	1	1	0.235279399499583	0	0.300938766801792	1	1	0	ctgctgcggccggagcaggtCctgaagcgcctcgcggtgtg	17	13	0	1	rs761065		TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	EME2-229	NM_001257370	exon1	c.C216G	p.V72V	GCAGGTCCTGAAG	.	6	5	0	0	C|0.615;G|0.385	0	0	0	0	0	G	1823444	C	G	1823444	2	3	45	1	0	0	0	0	0	0	0	1	5102	842	30	3		3	EME2	16	1823444	Silent	SNP	C	TCGA-OR-A5L5-01A-11D-A29I-10	390	1823444	88531309	84	9407										
ZNF598	90850	hgsc.bcm.edu	37	chr16	2049849	2049849	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.00884955752212389	1	1	0.235279399499583	0	0.300938766801792	1	1	0	gagacggagcccgtggggcgTgtgctcagaagctcctgcag	17	11	1	2	rs12149722		TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	ZNF598-432	NM_178167	exon11	c.A1701G	p.T567T	GGGGCGTGTGCTC	.	6	4	0	0	T|0.897;C|0.103	23	8	15	0	0	C	2049849	T	C	2049849	2	2	45	1	0	0	0	0	0	0	0	1	18065	1683	59	4		4	ZNF598	16	2049849	Silent	SNP	T	TCGA-OR-A5L5-01A-11D-A29I-10	226405	2049849	88304904	85	9408										
MTHFSD	64779	bcgsc.ca	37	chr16	86575737	86575737	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.00884955752212389	1	1	0.235279399499583	0	0.300938766801792	1	1	0	tggacgatggtgaccaccggCgtctccttgctgacggcgcc	14	14	1	2	rs3829533	byfrequency	TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	MTHFSD-90	NM_001159377	exon6	c.G525A	p.T175T	CACCGGCGTCTCC	.	167	7	108	0	C|0.895;T|0.105	10	10	0	0	0	T	86575737	C	T	86575737	2	4	45	1	0	0	0	0	0	0	0	1	9961	755	27	1		1	MTHFSD	16	86575737	Silent	SNP	C	TCGA-OR-A5L5-01A-11D-A29I-10	84525888	86575737	3779016	86	9409										
KDM6B	23135	broad.mit.edu	37	chr17	7752795	7752795	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.00884955752212389	1	1	0.235279399499583	0	0.300938766801792	1	1	0	gcaccttctgcccagcccacAcccccgtcagcctctgtccc	6	23	3	0	novel		TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	KDM6B-205	NM_001080424	exon11	c.A3189C	p.T1063T	GCCCACACCCCCG	.	67	7	30	0	.	5	5	0	0	0	C	7752795	A	C	7752795	2	2	45	1	0	0	0	0	0	0	0	1	8159	146	6	5		5	KDM6B	17	7752795	Silent	SNP	A	TCGA-OR-A5L5-01A-11D-A29I-10		7752795	73442415	87	9410										
ACACA	31	bcgsc.ca	37	chr17	35609866	35609866	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.00884955752212389	1	1	0.235279399499583	0	0.300938766801792	1	1	0	ccagtatcaattctgttcatCtgaaagctttcagtctctaa	5	10	6	1	rs2229416	byfrequency	TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	ACACA-154	NM_198834	exon15	c.G1923A	p.Q641Q	GTTCATCTGAAAG	.	76	5	65	0	T|0.139;C|0.861	0	0	0	0	0	T	35609866	C	T	35609866	2	4	45	1	0	0	0	0	0	0	0	1	106	912	32	3		3	ACACA	17	35609866	Silent	SNP	C	TCGA-OR-A5L5-01A-11D-A29I-10	27857071	35609866	45585344	88	9411										
KRTAP4-8	728224	hgsc.bcm.edu	37	chr17	39254013	39254013	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.00884955752212389	1	1	0.235279399499583	0	0.300938766801792	1	1	0	cagcactggggcttgcagcaGctggacacacagcagctggg	15	12	0	0	novel		TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	.	NM_031960	exon1	c.C324G	p.S108R	GCAGCAGCTGGAC	.	123	22	18	0	.	0	0	0	0	0	C	39254013	G	C	39254013	3	2	45	1	0	0	0	0	1	0	0	0	8578	962	34	3	237	3	KRTAP4-8	17	39254013	Missense_Mutation	SNP	G	TCGA-OR-A5L5-01A-11D-A29I-10	3644147	39254013	41941197	89	9412										
KRTAP4-11	653240	hgsc.bcm.edu	37	chr17	39274238	39274238	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.00884955752212389	1	1	0.235279399499583	0	0.300938766801792	1	1	0	gacacacagcagctggggcgAcagcagctggagatgcagca	15	11	0	1	novel		TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	.	NM_033059	exon1	c.T330C	p.C110C	GGGGCGACAGCAG	.	135	10	22	0	.	0	0	0	0	0	G	39274238	A	G	39274238	2	3	45	1	0	0	0	0	0	0	0	1	8571	273	10	4		4	KRTAP4-11	17	39274238	Silent	SNP	A	TCGA-OR-A5L5-01A-11D-A29I-10	20225	39274238	41920972	90	9413										
TMC6	11322	bcgsc.ca	37	chr17	76121864	76121864	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.00884955752212389	1	1	0.235279399499583	0	0.300938766801792	1	1	0	gtacaggcggaggctgggccAggcggagcggacaaagttcc	18	10	0	0	rs2748427	byfrequency	TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	TMC6-90	NM_001127198	exon5	c.T373C	p.W125R	TGGGCCAGGCGGA	.	147	109	8	0	A|0.702;G|0.298	1	1	0	0	0	G	76121864	A	G	76121864	3	3	45	1	0	0	0	0	1	0	0	0	16026	188	7	4	2108	4	TMC6	17	76121864	Missense_Mutation	SNP	A	TCGA-OR-A5L5-01A-11D-A29I-10	36847626	76121864	5073346	91	9414										
CBX4	8535	hgsc.bcm.edu	37	chr17	77808133	77808133	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00884955752212389	1	1	0.235279399499583	0	0.300938766801792	1	1	0	gggctgccccccaggcaggtGggggtgctgatgctgcgcgc	19	13	0	1	rs62075209		TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	CBX4-228	NM_003655	exon5	c.C1308T	p.P436P	GCAGGTGGGGGTG	.	5	5	0	0	G|0.993;A|0.007	0	0	0	0	0	A	77808133	G	A	77808133	2	1	45	1	0	0	0	0	0	0	0	1	2726	1335	47	3		3	CBX4	17	77808133	Silent	SNP	G	TCGA-OR-A5L5-01A-11D-A29I-10	1686269	77808133	3387077	92	9415										
MADCAM1	8174	bcgsc.ca	37	chr19	501701	501701	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.00884955752212389	1	1	0.235279399499583	0	0.300938766801792	1	1	0	cgacctccccggagcctcccGacaccacctccccggagtct	8	22	1	0	rs72970252	byfrequency	TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	MADCAM1-90	NM_130760	exon4	c.G700A	p.D234N	CCTCCCGACACCA	.	153	10	97	0	G|0.879;A|0.121	0	0	0	0	0	A	501701	G	A	501701	3	1	45	1	0	0	0	0	1	0	0	0	9179	1058	37	1	714	1	MADCAM1	19	501701	Missense_Mutation	SNP	G	TCGA-OR-A5L5-01A-11D-A29I-10		501701	58627282	93	9416										
FAM108A1	81926	hgsc.bcm.edu	37	chr19	1881488	1881488	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.00884955752212389	1	1	0.235279399499583	0	0.300938766801792	1	1	0	gcctccggcggcaggaaggcGagcttggcagcgatgcggcc	18	13	0	0	rs200425255		TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	FAM108A1-90	NM_031213	exon2	c.C78T	p.L26L	GAAGGCGAGCTTG	.	11	7	0	0	G|0.999;A|0.001	25	8	17	0	0	A	1881488	G	A	1881488	2	1	45	1	0	0	0	0	0	0	0	1	5407	1045	37	1		1	FAM108A1	19	1881488	Silent	SNP	G	TCGA-OR-A5L5-01A-11D-A29I-10	1379787	1881488	57247495	94	9417										
LINGO3	645191	hgsc.bcm.edu	37	chr19	2291501	2291501	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.00884955752212389	1	1	0.235279399499583	0	0.300938766801792	1	1	0	cgaaggcgccgggctccacgTgcgcgatggcgttctcgctc	15	15	1	0	rs201142184		TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	.	NM_001101391	exon2	c.A275T	p.H92L	TCCACGTGCGCGA	.	47	38	0	0	T|0.998;A|0.002	0	0	0	0	0	A	2291501	T	A	2291501	3	1	45	1	0	0	0	0	1	0	0	0	8840	1696	59	5	1507	5	LINGO3	19	2291501	Missense_Mutation	SNP	T	TCGA-OR-A5L5-01A-11D-A29I-10	410013	2291501	56837482	95	9418										
PTPRS	5802	hgsc.bcm.edu	37	chr19	5222831	5222831	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00884955752212389	1	1	0.235279399499583	0	0.300938766801792	1	1	0	gcagcgtgagcgcgttctccGcgcccggctcagccgctgcc	14	18	2	1	rs2230610	byfrequency	TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	PTPRS-357	NM_002850	exon18	c.C2972T	p.A991V	TTCTCCGCGCCCG	.	7	6	0	0	G|0.979;A|0.021	3	0	2	1	0	A	5222831	G	A	5222831	3	1	45	1	0	0	0	0	1	0	0	0	12846	1087	38	1	2958	1	PTPRS	19	5222831	Missense_Mutation	SNP	G	TCGA-OR-A5L5-01A-11D-A29I-10	2931330	5222831	53906152	96	9419										
ZNF414	84330	hgsc.bcm.edu	37	chr19	8576670	8576670	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.00884955752212389	1	1	0.235279399499583	0	0.300938766801792	1	1	0	aagggttccagcagcgggaaCggcaggcccggcgctgatgc	17	12	0	1	rs7175	byfrequency;by2hit2allele;by1000genomes	TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	ZNF414-90	NM_032370	exon5	c.G705A	p.P235P	CGGGAACGGCAGG	.	23	21	0	0	C|0.788;T|0.212	3	0	3	0	0	T	8576670	C	T	8576670	2	4	45	1	0	0	0	0	0	0	0	1	17928	523	19	1		1	ZNF414	19	8576670	Silent	SNP	C	TCGA-OR-A5L5-01A-11D-A29I-10	3353839	8576670	50552313	97	9420										
CCDC105	126402	hgsc.bcm.edu	37	chr19	15133926	15133926	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.00884955752212389	1	1	0.235279399499583	0	0.300938766801792	1	1	0	gcagcaagagcagcgcggacCcctagtgaccccagcgtccc	12	17	0	2	rs8112667	byfrequency	TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	CCDC105-91	NM_173482	exon7	c.C1495A	p.P499T	GCGGACCCCTAGT	.	6	6	0	0	C|0.671;A|0.329	0	0	0	0	0	A	15133926	C	A	15133926	3	1	45	1	0	0	0	0	1	0	0	0	2746	623	22	3	1521	3	CCDC105	19	15133926	Missense_Mutation	SNP	C	TCGA-OR-A5L5-01A-11D-A29I-10	6557256	15133926	43995057	98	9421										
OCEL1	79629	hgsc.bcm.edu	37	chr19	17337555	17337555	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.00884955752212389	1	1	0.235279399499583	0	0.300938766801792	1	1	0	cacgacgccccccgcaggacCcgcccatcagcccggaaacc	9	22	1	0	rs3745163	byfrequency	TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	OCEL1-68	NM_024578	exon2	c.C123A	p.T41T	CAGGACCCGCCCA	.	7	5	0	0	C|0.734;A|0.266	12	1	11	0	0	A	17337555	C	A	17337555	2	1	45	1	0	0	0	0	0	0	0	1	10845	610	22	3		3	OCEL1	19	17337555	Silent	SNP	C	TCGA-OR-A5L5-01A-11D-A29I-10	2203629	17337555	41791428	99	9422										
ZNF420	147923	broad.mit.edu	37	chr19	37618242	37618242	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.00884955752212389	1	1	0.235279399499583	0	0.300938766801792	1	1	0	ggatgatcatatatgacaaaAtgtccattttcaaccagcat	6	8	2	2	novel		TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	ZNF420-90	NM_144689	exon5	c.A349G	p.M117V	GACAAAATGTCCA	.	225	4	212	0	.	1	1	0	0	0	G	37618242	A	G	37618242	3	3	45	1	0	0	0	0	1	0	0	0	17934	101	4	4	359	4	ZNF420	19	37618242	Missense_Mutation	SNP	A	TCGA-OR-A5L5-01A-11D-A29I-10	20280687	37618242	21510741	100	9423										
ZNF285	26974	ucsc.edu	37	chr19	44891043	44891043	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.00884955752212389	1	1	0.235279399499583	0	0.300938766801792	1	1	0	cacacacattgcatttgtatGgtttctcccctgtgtggact	8	11	1	0	rs77661661		TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	ZNF285-94	NM_152354	exon4	c.C1364A	p.P455Q	TTGTATGGTTTCT	.	183	28	163	4	.	1	1	0	0	0	T	44891043	G	T	44891043	3	4	45	1	0	0	0	0	1	0	0	0	17859	1348	47	3	412	3	ZNF285	19	44891043	Missense_Mutation	SNP	G	TCGA-OR-A5L5-01A-11D-A29I-10	7272801	44891043	14237940	101	9424										
SCAF1	58506	hgsc.bcm.edu	37	chr19	50154607	50154607	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.00884955752212389	1	1	0.235279399499583	0	0.300938766801792	1	1	0	tcccaggtgacgagagccccCgcccggacgcgcagcccaca	12	19	0	2	rs146455893	byfrequency	TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	SCAF1-68	NM_021228	exon7	c.C961T	p.R321C	AGCCCCCGCCCGG	.	15	11	1	0	A|0.000;C|0.999;T|0.001	7	2	5	0	0	T	50154607	C	T	50154607	3	4	45	1	0	0	0	0	1	0	0	0	13903	652	23	1	983	1	SCAF1	19	50154607	Missense_Mutation	SNP	C	TCGA-OR-A5L5-01A-11D-A29I-10	5263564	50154607	8974376	102	9425										
SHANK1	50944	broad.mit.edu	37	chr19	51165375	51165376	+	Frame_Shift_Ins	INS	-	-	C													0.00884955752212389	1	1	0.235279399499583	0	0.300938766801792	1	1	0	gggctcggtgctccgccaaaINScccagccactccagccaatc					rs146869643	by1000genomes	TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	SHANK1-153	NM_016148	exon23	c.6333_6334insG	p.G2111fs	CGCCAAACCCAGC	.	240	8	172	0	.	0	0	0	0	0	C	51165376	-	C	51165375	7	5	45	1	0	1	1	0	0	0	0	0	14299	30	2	0	156	0	SHANK1	19	51165375	Frame_Shift_Ins	INS	-	TCGA-OR-A5L5-01A-11D-A29I-10	1010768	51165375	7963608	103	9426										
NLRP5	126206	bcgsc.ca	37	chr19	56572875	56572875	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00884955752212389	1	1	0.235279399499583	0	0.300938766801792	1	1	0	ttcttttgatgaagatgaccGgtactggtggaaaaactgaa	11	5	1	5	rs36118060	byfrequency	TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	NLRP5-162	NM_153447	exon15	c.G3584A	p.R1195Q	ATGACCGGTACTG	.	204	7	190	2	G|0.825;A|0.175	0	0	0	0	0	A	56572875	G	A	56572875	3	1	45	1	0	0	0	0	1	0	0	0	10509	1116	39	1	3642	1	NLRP5	19	56572875	Missense_Mutation	SNP	G	TCGA-OR-A5L5-01A-11D-A29I-10	5407500	56572875	2556108	104	9427										
TMC2	117532	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr20	2573005	2573005	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.00884955752212389	1	1	0.235279399499583	0	0.300938766801792	1	1	0	tcccagaaagacagtgcctcGggctgaggaagaaaaggcca	13	10	0	4	novel		TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	TMC2-93	NM_080751	exon8	c.G884A	p.R295Q	TGCCTCGGGCTGA	.	189	61	130	0	.	0	0	0	0	0	A	2573005	G	A	2573005	3	1	45	1	0	0	0	0	1	0	0	0	16022	1116	39	1	914	1	TMC2	20	2573005	Missense_Mutation	SNP	G	TCGA-OR-A5L5-01A-11D-A29I-10		2573005	60452515	105	9428										
ACTR5	79913	hgsc.bcm.edu	37	chr20	37377139	37377139	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.00884955752212389	1	1	0.235279399499583	0	0.300938766801792	1	1	0	aagatggcggcgaacgtgttCccgttccgcgacgcccgtgc	14	14	0	1	rs2254105	byfrequency	TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	ACTR5-90	NM_024855	exon1	c.C18T	p.F6F	CGTGTTCCCGTTC	.	8	6	0	0	C|0.769;T|0.231	2	0	2	0	0	T	37377139	C	T	37377139	2	4	45	1	0	0	0	0	0	0	0	1	215	854	30	3		3	ACTR5	20	37377139	Silent	SNP	C	TCGA-OR-A5L5-01A-11D-A29I-10	34804134	37377139	25648381	106	9429										
SCARF2	91179	hgsc.bcm.edu	37	chr22	20780091	20780091	+	Silent	SNP	C	C	G													0.00884955752212389	1	1	0.235279399499583	0	0.300938766801792	1	1	0	gtcgcctcctcgggcagcccCggggggcgcggcgttgggtc					rs77189880	bycluster;byfrequency;by1000genomes	TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	SCARF2-341	NM_153334	exon11	c.G2187C	p.P729P	CAGCCCCGGGGGG	.	9	9	0	0	C|0.138;G|0.862	0	0	0	0	0	G	20780091	C	G	20780091	2	3	45	1	0	0	0	0	0	0	0	1	13919	639	23	2		2	SCARF2	22	20780091	Silent	SNP	C	TCGA-OR-A5L5-01A-11D-A29I-10		20780091	30524475	107	9430	113	2								
SCARF2	91179	hgsc.bcm.edu	37	chr22	20780097	20780097	+	Silent	SNP	G	G	C													0.00884955752212389	1	1	0.235279399499583	0	0.300938766801792	1	1	0	tcctcgggcagccccgggggGcgcggcgttgggtcgcgggt					rs759609	bycluster;byfrequency;by1000genomes	TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	SCARF2-341	NM_153334	exon11	c.C2181G	p.R727R	CGGGGGGCGCGGC	.	9	9	0	0	G|0.826;C|0.174	0	0	0	0	0	C	20780097	G	C	20780097	2	2	45	1	0	0	0	0	0	0	0	1	13919	1190	42	3		3	SCARF2	22	20780097	Silent	SNP	G	TCGA-OR-A5L5-01A-11D-A29I-10	6	20780097	30524469	108	9431	113	2								
CRYBB1	1414	bcgsc.ca	37	chr22	26995525	26995525	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.00884955752212389	1	1	0.235279399499583	0	0.300938766801792	1	1	0	ctgcttgtcacgcaggcgacGcagggactgcatctgtggct	14	12	2	0	novel		TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	CRYBB1-91	NM_001887	exon6	c.C688A	p.R230S	GGCGACGCAGGGA	.	169	6	155	0	.	2	2	0	0	0	T	26995525	G	T	26995525	3	4	45	1	0	0	0	0	1	0	0	0	3916	1087	38	2	74	2	CRYBB1	22	26995525	Missense_Mutation	SNP	G	TCGA-OR-A5L5-01A-11D-A29I-10	6215428	26995525	24309041	109	9432										
MN1	4330	hgsc.bcm.edu	37	chr22	28195386	28195386	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.00884955752212389	1	1	0.235279399499583	0	0.300938766801792	1	1	0	ggcgtgcccgcctcgccctgCtggggccgagggagcgcagg	19	15	0	0	rs45589338	byfrequency	TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	MN1-993	NM_002430	exon1	c.G1146T	p.Q382H	GCCCTGCTGGGGC	.	7	5	0	0	C|0.986;A|0.014	0	0	0	0	0	A	28195386	C	A	28195386	3	1	45	1	0	0	0	0	1	0	0	0	9701	796	28	3	2824	3	MN1	22	28195386	Missense_Mutation	SNP	C	TCGA-OR-A5L5-01A-11D-A29I-10	1199861	28195386	23109180	110	9433										
TRIOBP	11078	hgsc.bcm.edu	37	chr22	38122462	38122462	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.00884955752212389	1	1	0.235279399499583	0	0.300938766801792	1	1	0	cagcagcgggggccgcacccAcagccctggccgtgcagagg	16	16	0	1	rs739138	byfrequency	TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	TRIOBP-136	NM_001039141	exon7	c.A3899G	p.H1300R	GCACCCACAGCCC	.	6	5	0	0	A|0.354;G|0.646	0	0	0	0	0	G	38122462	A	G	38122462	3	3	45	1	0	0	0	0	1	0	0	0	16591	159	6	4	3917	4	TRIOBP	22	38122462	Missense_Mutation	SNP	A	TCGA-OR-A5L5-01A-11D-A29I-10	9927076	38122462	13182104	111	9434										
PRR5	55615	hgsc.bcm.edu	37	chr22	45132831	45132831	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.00884955752212389	1	1	0.235279399499583	0	0.300938766801792	1	1	0	cggagatgacgtcctgccccGagcctcagggcttctccgac	12	16	2	2	rs56299305	byfrequency	TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	PRR5-23	NM_001198721	exon10	c.G940A	p.E314K	TGCCCCGAGCCTC	.	30	10	0	0	G|0.995;A|0.005	7	5	2	0	0	A	45132831	G	A	45132831	3	1	45	1	0	0	0	0	1	0	0	0	12632	1059	37	1	901	1	PRR5	22	45132831	Missense_Mutation	SNP	G	TCGA-OR-A5L5-01A-11D-A29I-10	7010369	45132831	6171735	112	9435										
TTC38	55020	bcgsc.ca	37	chr22	46664412	46664412	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.00884955752212389	1	1	0.235279399499583	0	0.300938766801792	1	1	0	cccttcttgccgtctgtaggCctggaaggatgcgaggctcc	13	13	2	0	rs117135869	byfrequency	TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	TTC38-91	NM_017931	exon2	c.C35T	p.A12V	TGTAGGCCTGGAA	.	151	8	155	4	C|0.990;T|0.010	0	0	0	0	0	T	46664412	C	T	46664412	3	4	45	1	0	0	0	0	1	0	0	0	16744	753	26	3	41	3	TTC38	22	46664412	Missense_Mutation	SNP	C	TCGA-OR-A5L5-01A-11D-A29I-10	1531581	46664412	4640154	113	9436										
MXRA5	25878	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	3240298	3240298	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.00884955752212389	1	1	0.235279399499583	0	0.300938766801792	1	1	0	tccttcgagaagggtgagtgCtcatggtggatgacggagca	16	7	1	3	novel		TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	MXRA5-136	NM_015419	exon5	c.G3428C	p.S1143T	TGAGTGCTCATGG	.	119	55	139	0	.	0	0	0	0	0	G	3240298	C	G	3240298	3	3	45	1	0	0	0	0	1	0	0	0	10031	797	28	3	5070	3	MXRA5	23	3240298	Missense_Mutation	SNP	C	TCGA-OR-A5L5-01A-11D-A29I-10		3240298	152030262	114	9437										
SPRY3	10251	bcgsc.ca	37	chrX	155004280	155004280	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.00884955752212389	1	1	0.235279399499583	0	0.300938766801792	1	1	0	ggatgcctccatctgtgccaAcagggctatgatagcctccg	11	13	1	1	rs306888	byfrequency	TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	SPRY3-136	NM_005840	exon2	c.A747G	p.Q249Q	GTGCCAACAGGGC	.	156	6	169	0	A|0.771;G|0.229	0	0	0	0	0	G	155004280	A	G	155004280	2	3	45	1	0	0	0	0	0	0	0	1	15144	40	2	4		4	SPRY3	23	155004280	Silent	SNP	A	TCGA-OR-A5L5-01A-11D-A29I-10	151763982	155004280	266280	115	9438										
PTPRF	5792	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	44057031	44057031	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0188679245283019	2	1	0.331619894415115	1.30437158469945	0	0.428571428571429	1	0	cccaacggcctggtgcggggAtaccgcgtctactatactcc	11	15	1	0	novel		TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	.	PTPRF-232	NM_002840	exon9	c.A1338G	p.G446G	GCGGGGATACCGC	.	72	18	46	0	.	0	0	0	0	0	G	44057031	A	G	44057031	2	3	46	1	0	0	0	0	0	0	0	1	12836	320	12	4		4	PTPRF	1	44057031	Silent	SNP	A	TCGA-OR-A5L6-01A-11D-A29I-10		44057031	205193590	1	9439										
TCTEX1D4	343521	hgsc.bcm.edu	37	chr1	45271828	45271828	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0188679245283019	2	1	0.331619894415115	1.30437158469945	0	0.428571428571429	1	0	ggccccagcaccacactgcaTaccagcttgtagcgtggcgg	12	15	0	0	rs17885815	byfrequency	TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	.	TCTEX1D4-91	NM_001013632	exon2	c.A513G	p.V171V	ACTGCATACCAGC	.	10	8	1	0	T|0.859;C|0.141	0	0	0	0	0	C	45271828	T	C	45271828	2	2	46	1	0	0	0	0	0	0	0	1	15758	1393	49	4		4	TCTEX1D4	1	45271828	Silent	SNP	T	TCGA-OR-A5L6-01A-11D-A29I-10	1214797	45271828	203978793	2	9440										
JAK1	3716	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	65321267	65321267	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0188679245283019	2	1	0.331619894415115	1.30437158469945	0	0.428571428571429	1	0	caggatctgcttcttgaggtGgctcatgaggtctcccaagc	12	11	4	2	novel		TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	.	JAK1-3900	NM_002227	exon11	c.C1573T	p.H525Y	TGAGGTGGCTCAT	.	107	15	142	0	.	3	3	0	0	0	A	65321267	G	A	65321267	3	1	46	1	0	0	0	0	1	0	0	0	7958	1348	47	3	1951	3	JAK1	1	65321267	Missense_Mutation	SNP	G	TCGA-OR-A5L6-01A-11D-A29I-10	20049439	65321267	183929354	3	9441										
OVGP1	5016	bcgsc.ca	37	chr1	111957533	111957533	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0188679245283019	2	1	0.331619894415115	1.30437158469945	0	0.428571428571429	1	0	tgactcacaggggtcacagaCtgatgacccacaggggtcag	13	11	3	4	rs112145355		TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	.	OVGP1-135	NM_002557	exon11	c.G1590A	p.Q530Q	CACAGACTGATGA	.	35	21	51	1	C|0.500;T|0.500	0	0	0	0	0	T	111957533	C	T	111957533	2	4	46	1	0	0	0	0	0	0	0	1	11354	564	20	3		3	OVGP1	1	111957533	Silent	SNP	C	TCGA-OR-A5L6-01A-11D-A29I-10	46636266	111957533	137293088	4	9442										
KPRP	448834	broad.mit.edu	37	chr1	152733496	152733496	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0188679245283019	2	1	0.331619894415115	1.30437158469945	0	0.428571428571429	1	0	agccttgtccacgaccagagCcaattcccctgccggcgccc	9	19	0	1	novel		TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	.	KPRP-95	NM_001025231	exon2	c.C1432A	p.P478T	CCAGAGCCAATTC	.	53	4	43	2	.	0	0	0	0	0	A	152733496	C	A	152733496	3	1	46	1	0	0	0	0	1	0	0	0	8457	739	26	3	1434	3	KPRP	1	152733496	Missense_Mutation	SNP	C	TCGA-OR-A5L6-01A-11D-A29I-10	40775963	152733496	96517125	5	9443										
F5	2153	broad.mit.edu;bcgsc.ca	37	chr1	169510485	169510485	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0188679245283019	2	1	0.331619894415115	1.30437158469945	0	0.428571428571429	1	0	tctagagaaagggttgtatgGctgaggtctggagaaagggg	18	3	2	3	novel		TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	.	F5-157	NM_000130	exon13	c.C3843A	p.S1281R	TGTATGGCTGAGG	.	318	11	383	1	.	0	0	0	0	0	T	169510485	G	T	169510485	3	4	46	1	0	0	0	0	1	0	0	0	5361	1194	42	3	2883	3	F5	1	169510485	Missense_Mutation	SNP	G	TCGA-OR-A5L6-01A-11D-A29I-10	16776989	169510485	79740136	6	9444										
TOR3A	64222	hgsc.bcm.edu	37	chr1	179051300	179051300	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0188679245283019	2	1	0.331619894415115	1.30437158469945	0	0.428571428571429	1	0	ggcgccagctttggctctttTtcctgctgctgctcccgggc	12	15	1	0	rs2296377	byfrequency	TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	.	TOR3A-90	NM_022371	exon1	c.T37C	p.F13L	CTCTTTTTCCTGC	.	8	8	2	0	T|0.229;C|0.771	0	0	0	0	0	C	179051300	T	C	179051300	3	2	46	1	0	0	0	0	1	0	0	0	16414	1841	64	4	39	4	TOR3A	1	179051300	Missense_Mutation	SNP	T	TCGA-OR-A5L6-01A-11D-A29I-10	9540815	179051300	70199321	7	9445										
HMCN1	83872	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	186047340	186047340	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0188679245283019	2	1	0.331619894415115	1.30437158469945	0	0.428571428571429	1	0	aagattcccttcaatatgatGtccgtgtactcggtgagttt	9	8	1	3	novel		TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	.	HMCN1-113	NM_031935	exon55	c.G8587A	p.V2863I	TATGATGTCCGTG	.	118	22	116	0	.	0	0	0	0	0	A	186047340	G	A	186047340	3	1	46	1	0	0	0	0	1	0	0	0	7241	1377	48	3	8805	3	HMCN1	1	186047340	Missense_Mutation	SNP	G	TCGA-OR-A5L6-01A-11D-A29I-10	6996040	186047340	63203281	8	9446										
TMEM206	55248	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	212560297	212560297	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0188679245283019	2	1	0.331619894415115	1.30437158469945	0	0.428571428571429	1	0	acagggtgcttgagtttctcAcgaaagtctgtgatggtccg	13	8	2	2	novel		TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	.	TMEM206-153	NM_001198862	exon4	c.T462A	p.R154R	TTTCTCACGAAAG	.	167	11	154	0	.	0	0	0	0	0	T	212560297	A	T	212560297	2	4	46	1	0	0	0	0	0	0	0	1	16168	146	6	5		5	TMEM206	1	212560297	Silent	SNP	A	TCGA-OR-A5L6-01A-11D-A29I-10	26512957	212560297	36690324	9	9447										
ADSS	159	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	244583531	244583531	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.0188679245283019	2	1	0.331619894415115	1.30437158469945	0	0.428571428571429	1	0	ccaagattttctttggtggtCcatgtagggcctcatataga	10	8	2	2	novel		TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	.	ADSS-229	NM_001126	exon8	c.G731C	p.G244A	GGTGGTCCATGTA	.	50	14	96	0	.	1	1	0	0	0	G	244583531	C	G	244583531	3	3	46	1	0	0	0	0	1	0	0	0	347	855	30	3	663	3	ADSS	1	244583531	Missense_Mutation	SNP	C	TCGA-OR-A5L6-01A-11D-A29I-10	32023234	244583531	4667090	10	9448										
KHK	3795	bcgsc.ca	37	chr2	27315252	27315252	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0188679245283019	2	1	0.331619894415115	1.30437158469945	0	0.428571428571429	1	0	acgcgtccaactcctgcaccGttctctccctgctcggagcc	8	19	1	0	rs2304681	byfrequency	TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	.	KHK-115	NM_006488	exon2	c.G145A	p.V49I	TGCACCGTTCTCT	.	77	5	78	0	G|0.648;A|0.352	1	1	0	0	0	A	27315252	G	A	27315252	3	1	46	1	0	0	0	0	1	0	0	0	8170	1145	40	1	151	1	KHK	2	27315252	Missense_Mutation	SNP	G	TCGA-OR-A5L6-01A-11D-A29I-10		27315252	215884121	11	9449										
FEZ2	9637	hgsc.bcm.edu	37	chr2	36825137	36825137	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0188679245283019	2	1	0.331619894415115	1.30437158469945	0	0.428571428571429	1	0	tctcctccaagctgcaggccGgggccgggaaaccgtcggcg	15	15	1	0	rs1544655		TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	.	FEZ2-23	NM_001042548	exon1	c.C149T	p.P50L	CAGGCCGGGGCCG	.	6	6	0	0	T|0.817;C|0.180	0	0	0	0	0	A	36825137	G	A	36825137	3	1	46	1	0	0	0	0	1	0	0	0	5843	1116	39	1	1029	1	FEZ2	2	36825137	Missense_Mutation	SNP	G	TCGA-OR-A5L6-01A-11D-A29I-10	9509885	36825137	206374236	12	9450										
MKI67IP	84365	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr2	122493289	122493289	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0188679245283019	2	1	0.331619894415115	1.30437158469945	0	0.428571428571429	1	0	ggttaggtaggtggcgcacaTagactactccaggagtaagt	14	7	0	1	novel		TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	.	MKI67IP-90	NM_032390	exon2	c.A143G	p.Y48C	CGCACATAGACTA	.	47	12	44	0	.	2	1	1	0	0	C	122493289	T	C	122493289	3	2	46	1	0	0	0	0	1	0	0	0	9627	1406	49	4	762	4	MKI67IP	2	122493289	Missense_Mutation	SNP	T	TCGA-OR-A5L6-01A-11D-A29I-10	85668152	122493289	120706084	13	9451										
NEB	4703	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	152382545	152382545	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0188679245283019	2	1	0.331619894415115	1.30437158469945	0	0.428571428571429	1	0	gtagtgttgtgtatgagcccTgtgccaagtgcttcttgaca	12	8	1	2	novel		TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	.	NEB-145	NM_001271208	exon151	c.A22193T	p.Q7398L	GAGCCCTGTGCCA	.	211	44	148	0	.	0	0	0	0	0	A	152382545	T	A	152382545	3	1	46	1	0	0	0	0	1	0	0	0	10331	1580	55	5	3621	5	NEB	2	152382545	Missense_Mutation	SNP	T	TCGA-OR-A5L6-01A-11D-A29I-10	29889256	152382545	90816828	14	9452										
XIRP2	129446	hgsc.bcm.edu;broad.mit.edu	37	chr2	168099448	168099448	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0188679245283019	2	1	0.331619894415115	1.30437158469945	0	0.428571428571429	1	0	taagaaaaaacttagaaaaaGattatatcagtgaagtttct	6	3	2	4	novel		TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	.	XIRP2-104	NM_152381	exon9	c.G1546T	p.D516Y	GAAAAAGATTATA	.	52	4	74	0	.	0	0	0	0	0	T	168099448	G	T	168099448	3	4	46	1	0	0	0	0	1	0	0	0	17468	942	33	3	1576	3	XIRP2	2	168099448	Missense_Mutation	SNP	G	TCGA-OR-A5L6-01A-11D-A29I-10	15716903	168099448	75099925	15	9453										
C2orf83	56918	broad.mit.edu;ucsc.edu	37	chr2	228477731	228477731	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0188679245283019	2	1	0.331619894415115	1.30437158469945	0	0.428571428571429	1	0	agaaccatcacaagggagggGgcagttctacaggtgaagcc	14	9	2	2	novel		TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	.	C2orf83-90	NM_001162483	exon3	c.C210A	p.A70A	GGAGGGGGCAGTT	.	39	4	35	1	.	0	0	0	0	0	T	228477731	G	T	228477731	2	4	46	1	0	0	0	0	0	0	0	1	2204	1219	43	3		3	C2orf83	2	228477731	Silent	SNP	G	TCGA-OR-A5L6-01A-11D-A29I-10	60378283	228477731	14721642	16	9454										
PID1	55022	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	229890685	229890685	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0188679245283019	2	1	0.331619894415115	1.30437158469945	0	0.428571428571429	1	0	ggagccaaacttggaatggcCggatttccaggagggcattg	15	8	0	0	novel		TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	.	PID1-94	NM_017933	exon4	c.G410A	p.R137Q	AATGGCCGGATTT	.	183	67	155	0	.	1	1	0	0	0	T	229890685	C	T	229890685	3	4	46	1	0	0	0	0	1	0	0	0	11911	652	23	1	340	1	PID1	2	229890685	Missense_Mutation	SNP	C	TCGA-OR-A5L6-01A-11D-A29I-10	1412954	229890685	13308688	17	9455										
UGT1A5	54579	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	234621931	234621931	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0188679245283019	2	1	0.331619894415115	1.30437158469945	0	0.428571428571429	1	0	cttttgctgggtcacactcaAtcgttctttgaaacagaaca	7	10	3	2	novel		TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	.	UGT1A5-3	NM_019078	exon1	c.A294T	p.Q98H	CACTCAATCGTTC	.	153	27	119	0	.	0	0	0	0	0	T	234621931	A	T	234621931	3	4	46	1	0	0	0	0	1	0	0	0	16986	98	4	5	296	5	UGT1A5	2	234621931	Missense_Mutation	SNP	A	TCGA-OR-A5L6-01A-11D-A29I-10	4731246	234621931	8577442	18	9456										
ESPNL	339768	hgsc.bcm.edu	37	chr2	239009336	239009336	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0188679245283019	2	1	0.331619894415115	1.30437158469945	0	0.428571428571429	1	0	ctgtgctggctggtccgcgaGgggggctgcggtctgcaggt	20	10	1	0	rs61744770	byfrequency	TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	.	ESPNL-69	NM_194312	exon1	c.G276A	p.E92E	CCGCGAGGGGGGC	.	11	10	2	0	G|0.739;A|0.261	0	0	0	0	0	A	239009336	G	A	239009336	2	1	46	1	0	0	0	0	0	0	0	1	5268	991	35	3		3	ESPNL	2	239009336	Silent	SNP	G	TCGA-OR-A5L6-01A-11D-A29I-10	4387405	239009336	4190037	19	9457										
ITIH1	3697	bcgsc.ca	37	chr3	52824813	52824813	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0188679245283019	2	1	0.331619894415115	1.30437158469945	0	0.428571428571429	1	0	aacctggtggtgtctgtggaCgacggtggcacctttgaggt	16	8	1	1	rs146607393	byfrequency	TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	.	ITIH1-93	NM_002215	exon20	c.C2370T	p.D790D	TGTGGACGACGGT	.	245	7	256	1	C|1.000;T|0.000	0	0	0	0	0	T	52824813	C	T	52824813	2	4	46	1	0	0	0	0	0	0	0	1	7924	535	19	1		1	ITIH1	3	52824813	Silent	SNP	C	TCGA-OR-A5L6-01A-11D-A29I-10		52824813	145197617	20	9458										
SI	6476	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	164748583	164748583	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0188679245283019	2	1	0.331619894415115	1.30437158469945	0	0.428571428571429	1	0	acaattaaatctttcattttCtgagaaaatttgattccatt	3	6	3	2	novel		TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	.	SI-104	NM_001041	exon25	c.G2809C	p.E937Q	CATTTTCTGAGAA	.	147	29	121	0	.	0	0	0	0	0	G	164748583	C	G	164748583	3	3	46	1	0	0	0	0	1	0	0	0	14332	922	32	3	2770	3	SI	3	164748583	Missense_Mutation	SNP	C	TCGA-OR-A5L6-01A-11D-A29I-10	111923770	164748583	33273847	21	9459										
CRIPAK	285464	hgsc.bcm.edu	37	chr4	1388726	1388726	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0188679245283019	2	1	0.331619894415115	1.30437158469945	0	0.428571428571429	1	0	cgcctgctcacacgtgcccaTgcggagtgcccgcctgctca	11	18	2	0	rs199689156	byfrequency	TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	.	CRIPAK-90	NM_175918	exon1	c.T427C	p.C143R	TGCCCATGCGGAG	.	146	19	33	0	T|0.980;C|0.020	1	1	0	0	0	C	1388726	T	C	1388726	3	2	46	1	0	0	0	0	1	0	0	0	3883	1464	51	4	429	4	CRIPAK	4	1388726	Missense_Mutation	SNP	T	TCGA-OR-A5L6-01A-11D-A29I-10		1388726	189765550	22	9460										
CRIPAK	285464	hgsc.bcm.edu	37	chr4	1388974	1388974	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0188679245283019	2	1	0.331619894415115	1.30437158469945	0	0.428571428571429	1	0	cgcctgctcacacgtgccgaTgcggagtgcccgcctgctca	12	17	2	0	rs71614969	bycluster	TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	.	CRIPAK-90	NM_175918	exon1	c.T675C	p.D225D	TGCCGATGCGGAG	.	19	17	3	0	C|1.000;|0.000	9	6	3	0	0	C	1388974	T	C	1388974	2	2	46	1	0	0	0	0	0	0	0	1	3883	1461	51	4		4	CRIPAK	4	1388974	Silent	SNP	T	TCGA-OR-A5L6-01A-11D-A29I-10	248	1388974	189765302	23	9461										
DSPP	1834	bcgsc.ca	37	chr4	88537027	88537027	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0188679245283019	2	1	0.331619894415115	1.30437158469945	0	0.428571428571429	1	0	gacagcagtgatagcagtgaCagcagtgacagcagcgacag	14	9	0	3	novel		TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	.	DSPP-90	NM_014208	exon5	c.C3213A	p.D1071E	CAGTGACAGCAGT	.	488	26	340	1	.	0	0	0	0	0	A	88537027	C	A	88537027	3	1	46	1	0	0	0	0	1	0	0	0	4793	477	17	3	3227	3	DSPP	4	88537027	Missense_Mutation	SNP	C	TCGA-OR-A5L6-01A-11D-A29I-10	87148053	88537027	102617249	24	9462										
DSPP	1834	ucsc.edu	37	chr4	88537081	88537081	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0188679245283019	2	1	0.331619894415115	1.30437158469945	0	0.428571428571429	1	0	gaaagcagtgatagcagtgaCagcagcaatagcagtgacag	13	7	0	3	novel		TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	.	DSPP-90	NM_014208	exon5	c.C3267T	p.D1089D	CAGTGACAGCAGC	.	194	67	143	2	.	0	0	0	0	0	T	88537081	C	T	88537081	2	4	46	1	0	0	0	0	0	0	0	1	4793	477	17	3		3	DSPP	4	88537081	Silent	SNP	C	TCGA-OR-A5L6-01A-11D-A29I-10	54	88537081	102617195	25	9463										
ANK2	287	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	114244940	114244940	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0188679245283019	2	1	0.331619894415115	1.30437158469945	0	0.428571428571429	1	0	cctctccatgtcttgaacgtGacaacagcaggtgaactact	8	12	2	3	novel		TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	.	ANK2-583	NM_001127493	exon28	c.G2863T	p.D955Y	GAACGTGACAACA	.	161	27	147	0	.	0	0	0	0	0	T	114244940	G	T	114244940	3	4	46	1	0	0	0	0	1	0	0	0	621	1290	45	3	3057	3	ANK2	4	114244940	Missense_Mutation	SNP	G	TCGA-OR-A5L6-01A-11D-A29I-10	25707859	114244940	76909336	26	9464										
WDR17	116966	bcgsc.ca	37	chr4	177061126	177061126	+	Splice_Site	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0188679245283019	2	1	0.331619894415115	1.30437158469945	0	0.428571428571429	1	0	tgcagcagtgatggtttctgGtaagtactatgtatgataca	11	5	1	2	novel		TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	.	WDR17-95	NM_181265	exon10	c.1442+1G>T	.	TTTCTGGTAAGTA	.	63	4	62	0	.	0	0	0	0	0	T	177061126	G	T	177061126	5	4	46	1	0	0	0	0	0	0	1	0	17315	1275	44	3	1553	3	WDR17	4	177061126	Splice_Site	SNP	G	TCGA-OR-A5L6-01A-11D-A29I-10	62816186	177061126	14093150	27	9465										
SRD5A1	6715	hgsc.bcm.edu	37	chr5	6633779	6633779	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0188679245283019	2	1	0.331619894415115	1.30437158469945	0	0.428571428571429	1	0	ggctgcgcggtcttcgcgcgCaatcgtcagacgaactcagt	13	13	3	1	rs248793	byfrequency	TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	.	SRD5A1-90	NM_001047	exon1	c.C90G	p.R30R	CGCGCGCAATCGT	.	8	8	0	0	C|0.454;G|0.546	0	0	0	0	0	G	6633779	C	G	6633779	2	3	46	1	0	0	0	0	0	0	0	1	15175	697	25	3		3	SRD5A1	5	6633779	Silent	SNP	C	TCGA-OR-A5L6-01A-11D-A29I-10		6633779	174281481	28	9466										
DNAH5	1767	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr5	13913969	13913969	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0188679245283019	2	1	0.331619894415115	1.30437158469945	0	0.428571428571429	1	0	aggcgtcggtgaaaagtttcGaattttccaaaaatatacat	8	6	0	1	novel		TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	.	DNAH5-182	NM_001369	exon11	c.C1419T	p.F473F	AGTTTCGAATTTT	.	81	6	85	0	.	0	0	0	0	0	A	13913969	G	A	13913969	2	1	46	1	0	0	0	0	0	0	0	1	4615	1049	37	1		1	DNAH5	5	13913969	Silent	SNP	G	TCGA-OR-A5L6-01A-11D-A29I-10	7280190	13913969	167001291	29	9467										
CKMT2	1160	broad.mit.edu;bcgsc.ca	37	chr5	80550829	80550829	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0188679245283019	2	1	0.331619894415115	1.30437158469945	0	0.428571428571429	1	0	cagatcacccaagggcagttCgacgagcattacgtgctgtc	11	12	1	1	novel		TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	.	CKMT2-90	NM_001825	exon6	c.C465T	p.F155F	GCAGTTCGACGAG	.	347	10	169	0	.	7	7	0	0	0	T	80550829	C	T	80550829	2	4	46	1	0	0	0	0	0	0	0	1	3457	883	31	1		1	CKMT2	5	80550829	Silent	SNP	C	TCGA-OR-A5L6-01A-11D-A29I-10	66636860	80550829	100364431	30	9468										
GPR150	285601	hgsc.bcm.edu	37	chr5	94956619	94956619	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.0188679245283019	2	1	0.331619894415115	1.30437158469945	0	0.428571428571429	1	0	ccgcccgcgcctggccggggGagcgtcgctgccacgggatc	17	17	0	0	rs113272282		TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	.	GPR150-90	NM_199243	exon1	c.G640C	p.E214Q	CCGGGGGAGCGTC	.	20	14	0	0	G|0.844;C|0.156	0	0	0	0	0	C	94956619	G	C	94956619	3	2	46	1	0	0	0	0	1	0	0	0	6676	1175	41	3	642	3	GPR150	5	94956619	Missense_Mutation	SNP	G	TCGA-OR-A5L6-01A-11D-A29I-10	14405790	94956619	85958641	31	9469										
CD14	929	broad.mit.edu	37	chr5	140012352	140012352	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0188679245283019	2	1	0.331619894415115	1.30437158469945	0	0.428571428571429	1	0	cgggtcggcgtccgcatcgaCgcgctttagaaacggctcta	13	13	1	1	novel		TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	.	CD14-90	NM_001174105	exon3	c.G217T	p.V73F	CATCGACGCGCTT	.	106	4	55	0	.	4	4	0	0	0	A	140012352	C	A	140012352	3	1	46	1	0	0	0	0	1	0	0	0	2970	536	19	2	914	2	CD14	5	140012352	Missense_Mutation	SNP	C	TCGA-OR-A5L6-01A-11D-A29I-10	45055733	140012352	40902908	32	9470										
PCDHB10	56126	hgsc.bcm.edu	37	chr5	140572420	140572420	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0188679245283019	2	1	0.331619894415115	1.30437158469945	0	0.428571428571429	1	0	gagagaagctgtgtggccctAaagagccctgtatgctgtat	13	8	0	2	rs61740634		TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	.	PCDHB10-92	NM_018930	exon1	c.A295G	p.K99E	GGCCCTAAAGAGC	.	518	75	264	0	A|0.986;G|0.014	0	0	0	0	0	G	140572420	A	G	140572420	3	3	46	1	0	0	0	0	1	0	0	0	11564	363	13	4	297	4	PCDHB10	5	140572420	Missense_Mutation	SNP	A	TCGA-OR-A5L6-01A-11D-A29I-10	560068	140572420	40342840	33	9471										
GRM6	2916	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	178419079	178419079	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0188679245283019	2	1	0.331619894415115	1.30437158469945	0	0.428571428571429	1	0	gtggaggcatagctgatctgGggtatctgtggggcaggaag	19	5	2	1	novel		TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	.	GRM6-588	NM_000843	exon2	c.C510T	p.P170P	GATCTGGGGTATC	.	132	79	48	0	.	0	0	0	0	0	A	178419079	G	A	178419079	2	1	46	1	0	0	0	0	0	0	0	1	6822	1219	43	3		3	GRM6	5	178419079	Silent	SNP	G	TCGA-OR-A5L6-01A-11D-A29I-10	37846659	178419079	2496181	34	9472										
CANX	821	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	179149880	179149880	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0188679245283019	2	1	0.331619894415115	1.30437158469945	0	0.428571428571429	1	0	ctttcagaatgactccttttAgtgctattggtttggagctg	10	7	1	2	novel		TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	.	CANX-90	NM_001746	exon11	c.A1258G	p.S420G	CCTTTTAGTGCTA	.	137	28	50	0	.	13	13	0	0	0	G	179149880	A	G	179149880	3	3	46	1	0	0	0	0	1	0	0	0	2624	420	15	4	1296	4	CANX	5	179149880	Missense_Mutation	SNP	A	TCGA-OR-A5L6-01A-11D-A29I-10	730801	179149880	1765380	35	9473										
CYP21A2	1589	bcgsc.ca	37	chr6	32006886	32006886	+	Splice_Site	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0188679245283019	2	1	0.331619894415115	1.30437158469945	0	0.428571428571429	1	0	tgcagacaagctggtgtctaGgaactacccggacctgtcct	11	12	1	1	rs75730897	byfrequency	TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	.	CYP21A2-68	.	.	.	.	TGTCTAGGAACTA	.	204	6	291	3	G|0.763;A|0.237	3	1	2	0	0	A	32006886	G	A	32006886	5	1	46	1	0	0	0	0	0	0	1	0	4159	1000	35	3	1839	3	CYP21A2	6	32006886	Splice_Site	SNP	G	TCGA-OR-A5L6-01A-11D-A29I-10		32006886	139108181	36	9474										
ITPR3	3710	bcgsc.ca	37	chr6	33657016	33657016	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0188679245283019	2	1	0.331619894415115	1.30437158469945	0	0.428571428571429	1	0	ccctgcccctggcccccaggCgtgctggactcccctctcat	9	21	1	0	rs150616390	byfrequency	TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	.	ITPR3-1085	NM_002224	exon50	c.C6696T	p.G2232G	CCCAGGCGTGCTG	.	34	7	43	0	C|0.999;T|0.001	0	0	0	0	0	T	33657016	C	T	33657016	2	4	46	1	0	0	0	0	0	0	0	1	7943	782	27	1		1	ITPR3	6	33657016	Silent	SNP	C	TCGA-OR-A5L6-01A-11D-A29I-10	1650130	33657016	137458051	37	9475										
MCM9	254394	bcgsc.ca	37	chr6	119136759	119136759	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0188679245283019	2	1	0.331619894415115	1.30437158469945	0	0.428571428571429	1	0	ttcttttgggtgagtccagcAttctgtctgggctatgtaca	11	8	3	1	rs65685	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	.	MCM9-515	NM_017696	exon12	c.T2660G	p.M887R	TCCAGCATTCTGT	.	65	4	51	0	A|0.878;C|0.085	0	0	0	0	0	C	119136759	A	C	119136759	3	2	46	1	0	0	0	0	1	0	0	0	9422	232	8	5		5	MCM9	6	119136759	Missense_Mutation	SNP	A	TCGA-OR-A5L6-01A-11D-A29I-10	85479743	119136759	51978308	38	9476										
LAMA2	3908	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	129381036	129381036	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0188679245283019	2	1	0.331619894415115	1.30437158469945	0	0.428571428571429	1	0	tgacaattaccctggatttaCagcaggtatagttcctcttt	7	9	1	1	novel		TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	.	LAMA2-162	NM_000426	exon3	c.C391A	p.Q131K	GATTTACAGCAGG	.	229	28	267	1	.	0	0	0	0	0	A	129381036	C	A	129381036	3	1	46	1	0	0	0	0	1	0	0	0	8628	479	17	3	401	3	LAMA2	6	129381036	Missense_Mutation	SNP	C	TCGA-OR-A5L6-01A-11D-A29I-10	10244277	129381036	41734031	39	9477										
LRP11	84918	hgsc.bcm.edu	37	chr6	150184882	150184882	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0188679245283019	2	1	0.331619894415115	1.30437158469945	0	0.428571428571429	1	0	cgctgtagccgccgctgcccGggcccgggcagtcctcctgg	15	18	0	0	rs9322225		TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	.	LRP11-90	NM_032832	exon1	c.C275G	p.P92R	CTGCCCGGGCCCG	.	9	9	0	0	G|0.492;C|0.508	0	0	0	0	0	C	150184882	G	C	150184882	3	2	46	1	0	0	0	0	1	0	0	0	8980	1116	39	2	1255	2	LRP11	6	150184882	Missense_Mutation	SNP	G	TCGA-OR-A5L6-01A-11D-A29I-10	20803846	150184882	20930185	40	9478										
EZR	7430	broad.mit.edu	37	chr6	159188467	159188467	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0188679245283019	2	1	0.331619894415115	1.30437158469945	0	0.428571428571429	1	0	accggctcgtacacggggggTggtgggggcgggggtgctgt	23	8	0	0	novel		TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	.	EZR-70	NM_003379	exon12	c.A1422C	p.P474P	GGGGGGTGGTGGG	.	90	21	69	11	.	18	17	1	0	0	G	159188467	T	G	159188467	2	3	46	1	0	0	0	0	0	0	0	1	5348	1683	59	5		5	EZR	6	159188467	Silent	SNP	T	TCGA-OR-A5L6-01A-11D-A29I-10	9003585	159188467	11926600	41	9479										
TNRC18	84629	hgsc.bcm.edu	37	chr7	5372406	5372406	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0188679245283019	2	1	0.331619894415115	1.30437158469945	0	0.428571428571429	1	0	tgcaggaagatgcgctcgctGcggcgccgcgtccacaggtc	15	14	0	1	rs13238738	byfrequency	TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	.	TNRC18-46	NM_001080495	exon19	c.C5994A	p.R1998R	CTCGCTGCGGCGC	.	11	11	0	0	G|0.411;T|0.589	0	0	0	0	0	T	5372406	G	T	5372406	2	4	46	1	0	0	0	0	0	0	0	1	16376	1306	46	3		3	TNRC18	7	5372406	Silent	SNP	G	TCGA-OR-A5L6-01A-11D-A29I-10		5372406	153766257	42	9480										
C7orf25	79020	hgsc.bcm.edu	37	chr7	42951515	42951515	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0188679245283019	2	1	0.331619894415115	1.30437158469945	0	0.428571428571429	1	0	tcgctccccggctcctcaccGgcagcgccagaaccgcgagc	11	20	1	1	rs647117	byfrequency	TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	.	C7orf25-69	NM_001099858	exon1	c.C152T	p.P51L	CTCACCGGCAGCG	.	5	5	0	0	G|0.340;A|0.660	0	0	0	0	0	A	42951515	G	A	42951515	3	1	46	1	0	0	0	0	1	0	0	0	2386	1130	39	1	1295	1	C7orf25	7	42951515	Missense_Mutation	SNP	G	TCGA-OR-A5L6-01A-11D-A29I-10	37579109	42951515	116187148	43	9481										
FBXL13	222235	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	102553550	102553550	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0188679245283019	2	1	0.331619894415115	1.30437158469945	0	0.428571428571429	1	0	aacctgggtgcagccagagaGgtccagatagatgagcttgt	14	8	0	4	novel		TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	.	FBXL13-226	NM_001111038	exon11	c.C991T	p.L331F	CAGAGAGGTCCAG	.	138	13	142	0	.	1	1	0	0	0	A	102553550	G	A	102553550	3	1	46	1	0	0	0	0	1	0	0	0	5728	1000	35	3	1256	3	FBXL13	7	102553550	Missense_Mutation	SNP	G	TCGA-OR-A5L6-01A-11D-A29I-10	59602035	102553550	56585113	44	9482										
ASB15	142685	bcgsc.ca	37	chr7	123269118	123269118	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0188679245283019	2	1	0.331619894415115	1.30437158469945	0	0.428571428571429	1	0	gaagactgcgctgtattttgGcgtttctaataatgacgttc	10	7	1	2	rs4731112	byfrequency	TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	.	ASB15-228	NM_080928	exon8	c.G1070C	p.G357A	ATTTTGGCGTTTC	.	338	9	265	1	G|0.256;C|0.744	0	0	0	0	0	C	123269118	G	C	123269118	3	2	46	1	0	0	0	0	1	0	0	0	1020	1203	42	3	1096	3	ASB15	7	123269118	Missense_Mutation	SNP	G	TCGA-OR-A5L6-01A-11D-A29I-10	20715568	123269118	35869545	45	9483										
ZNF467	168544	hgsc.bcm.edu	37	chr7	149462337	149462337	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0188679245283019	2	1	0.331619894415115	1.30437158469945	0	0.428571428571429	1	0	ggggcgcgctggggcaccacGggatcggatcctgggccgca	19	13	0	0	rs855667	byfrequency	TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	.	ZNF467-90	NM_207336	exon5	c.C1254T	p.P418P	CACCACGGGATCG	.	4	4	0	0	G|0.763;A|0.237	0	0	0	0	0	A	149462337	G	A	149462337	2	1	46	1	0	0	0	0	0	0	0	1	17964	1103	39	1		1	ZNF467	7	149462337	Silent	SNP	G	TCGA-OR-A5L6-01A-11D-A29I-10	26193219	149462337	9676326	46	9484										
TMEM176A	55365	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	150500884	150500884	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0188679245283019	2	1	0.331619894415115	1.30437158469945	0	0.428571428571429	1	0	agtccagaagaagtcagaagGctacacctatgtacctcctt	8	11	1	3	novel		TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	.	TMEM176A-92	NM_018487	exon5	c.G519T	p.R173S	CAGAAGGCTACAC	.	77	19	71	0	.	0	0	0	0	0	T	150500884	G	T	150500884	3	4	46	1	0	0	0	0	1	0	0	0	16129	1194	42	3	533	3	TMEM176A	7	150500884	Missense_Mutation	SNP	G	TCGA-OR-A5L6-01A-11D-A29I-10	1038547	150500884	8637779	47	9485										
SFTPC	6440	bcgsc.ca	37	chr8	22021037	22021037	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0188679245283019	2	1	0.331619894415115	1.30437158469945	0	0.428571428571429	1	0	ccccagtcttgaggctctcaCtagaaaagtccacaacttcc	6	15	2	2	rs4715	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	.	SFTPC-90	NM_003018	exon4	c.C413A	p.T138N	CTCTCACTAGAAA	.	127	6	115	1	C|0.796;A|0.204	0	0	0	0	0	A	22021037	C	A	22021037	3	1	46	1	0	0	0	0	1	0	0	0	14227	565	20	3	427	3	SFTPC	8	22021037	Missense_Mutation	SNP	C	TCGA-OR-A5L6-01A-11D-A29I-10		22021037	124342985	48	9486										
ZNF517	340385	hgsc.bcm.edu	37	chr8	146033347	146033347	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0188679245283019	2	1	0.331619894415115	1.30437158469945	0	0.428571428571429	1	0	gggtgcccaggacggcggcgTggggcagggcgccctgctcg	21	13	0	0	rs2976653		TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	.	ZNF517-90	NM_213605	exon5	c.T1046C	p.V349A	GCGGCGTGGGGCA	.	23	23	0	0	G|0.992;C|0.006	0	0	0	0	0	C	146033347	T	C	146033347	3	2	46	1	0	0	0	0	1	0	0	0	17998	1696	59	4	1060	4	ZNF517	8	146033347	Missense_Mutation	SNP	T	TCGA-OR-A5L6-01A-11D-A29I-10	124012310	146033347	330675	49	9487										
CDC37L1	55664	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr9	4685143	4685143	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0188679245283019	2	1	0.331619894415115	1.30437158469945	0	0.428571428571429	1	0	agcacggatgccattagcaaGgatgtttttaataaggtatg	11	5	0	0	novel		TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	.	CDC37L1-90	NM_017913	exon2	c.G399A	p.K133K	TAGCAAGGATGTT	.	181	66	181	0	.	3	1	2	0	0	A	4685143	G	A	4685143	2	1	46	1	0	0	0	0	0	0	0	1	3075	991	35	3		3	CDC37L1	9	4685143	Silent	SNP	G	TCGA-OR-A5L6-01A-11D-A29I-10		4685143	136528288	50	9488										
PTPRD	5789	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	8485824	8485824	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0188679245283019	2	1	0.331619894415115	1.30437158469945	0	0.428571428571429	1	0	atggcccgggccctttgctcGtatgagcacgtacttttaca	10	12	0	1	novel		TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	.	PTPRD-912	NM_002839	exon28	c.C2993A	p.T998K	TTGCTCGTATGAG	.	185	23	159	1	.	0	0	0	0	0	T	8485824	G	T	8485824	3	4	46	1	0	0	0	0	1	0	0	0	12834	1145	40	2	2889	2	PTPRD	9	8485824	Missense_Mutation	SNP	G	TCGA-OR-A5L6-01A-11D-A29I-10	3800681	8485824	132727607	51	9489										
IARS	3376	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr9	94985663	94985663	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0188679245283019	2	1	0.331619894415115	1.30437158469945	0	0.428571428571429	1	0	tcaggagctgtaggttgataTactgacaaagaagagtacta	11	5	1	4	novel		TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	.	IARS-92	NM_013417	exon32	c.A3518G	p.Y1173C	TTGATATACTGAC	.	152	67	131	0	.	11	7	4	0	0	C	94985663	T	C	94985663	3	2	46	1	0	0	0	0	1	0	0	0	7494	1406	49	4	282	4	IARS	9	94985663	Missense_Mutation	SNP	T	TCGA-OR-A5L6-01A-11D-A29I-10	86499839	94985663	46227768	52	9490										
ALG2	85365	hgsc.bcm.edu	37	chr9	101983912	101983912	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0188679245283019	2	1	0.331619894415115	1.30437158469945	0	0.428571428571429	1	0	aaccatgcgcacgtaggcgcAgacggcggcgccgcggccgc	16	16	0	1	novel		TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	.	ALG2-92	NM_033087	exon1	c.T265G	p.C89G	AGGCGCAGACGGC	.	14	14	3	0	.	1	0	1	0	0	C	101983912	A	C	101983912	3	2	46	1	0	0	0	0	1	0	0	0	519	188	7	5	993	5	ALG2	9	101983912	Missense_Mutation	SNP	A	TCGA-OR-A5L6-01A-11D-A29I-10	6998249	101983912	39229519	53	9491										
FPGS	2356	hgsc.bcm.edu	37	chr9	130565267	130565267	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0188679245283019	2	1	0.331619894415115	1.30437158469945	0	0.428571428571429	1	0	cagcggcgtctgcgcgcggcAtaacgacccaggtcgcggcg	16	15	1	0	rs10760502	byfrequency	TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	.	FPGS-90	NM_004957	exon1	c.A64G	p.I22V	CGCGGCATAACGA	.	9	9	0	0	A|0.235;G|0.765	0	0	0	0	0	G	130565267	A	G	130565267	3	3	46	1	0	0	0	0	1	0	0	0	6055	217	8	4	66	4	FPGS	9	130565267	Missense_Mutation	SNP	A	TCGA-OR-A5L6-01A-11D-A29I-10	28581355	130565267	10648164	54	9492										
LYZL1	84569	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr10	29599974	29599975	+	Frame_Shift_Del	DEL	TG	TG	-													0.0188679245283019	2	1	0.331619894415115	1.30437158469945	0	0.428571428571429	1	0	tgtccgagtggaaaaaaggcTgtgaggtttcctaaactgga					novel		TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	TG	TG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	.	LYZL1-90	NM_032517	exon5	c.571_572del	p.191_191del	AAAGGCTGTGAGG	.	149	28	137	0	.	0	0	0	0	0	-	29599975	TG	-	29599974	7	5	46	1	0	1	0	1	0	0	0	0	9159	1580	55	0	589	0	LYZL1	10	29599974	Frame_Shift_Del	DEL	TG	TCGA-OR-A5L6-01A-11D-A29I-10		29599974	105934773	55	9493	114	2								
LYZL1	84569	hgsc.bcm.edu	37	chr10	29599976	29599977	+	Frame_Shift_Del	DEL	TG	TG	-													0.0188679245283019	2	1	0.331619894415115	1.30437158469945	0	0.428571428571429	1	0	tccgagtggaaaaaaggctgTgaggtttcctaaactggaac					novel		TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	TG	TG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	.	LYZL1-90	NM_032517	exon5	c.573_574del	p.191_192del	AGGCTGTGAGGTT	.	150	0	137	0	.	0	0	0	0	0	-	29599977	TG	-	29599976	7	5	46	1	0	1	0	1	0	0	0	0	9159	1702	59	0	591	0	LYZL1	10	29599976	Frame_Shift_Del	DEL	TG	TCGA-OR-A5L6-01A-11D-A29I-10	2	29599976	105934771	56	9494	114	2								
SIRT1	23411	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr10	69651221	69651221	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0188679245283019	2	1	0.331619894415115	1.30437158469945	0	0.428571428571429	1	0	tggtatttatgctcgccttgCtgtagacttcccagatcttc	8	11	1	2	novel		TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	.	SIRT1-226	NM_012238	exon4	c.C851T	p.A284V	GCCTTGCTGTAGA	.	119	40	129	0	.	0	0	0	0	0	T	69651221	C	T	69651221	3	4	46	1	0	0	0	0	1	0	0	0	14372	797	28	3	865	3	SIRT1	10	69651221	Missense_Mutation	SNP	C	TCGA-OR-A5L6-01A-11D-A29I-10	40051245	69651221	65883526	57	9495										
CYP26C1	340665	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr10	94821064	94821064	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0188679245283019	2	1	0.331619894415115	1.30437158469945	0	0.428571428571429	1	0	cctgtcagtgctgggggcggCgggcactgctctcctgtgcg	17	13	2	0	novel		TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	.	CYP26C1-90	NM_183374	exon1	c.C44T	p.A15V	GGGCGGCGGGCAC	.	71	20	29	0	.	0	0	0	0	0	T	94821064	C	T	94821064	3	4	46	1	0	0	0	0	1	0	0	0	4163	768	27	1	46	1	CYP26C1	10	94821064	Missense_Mutation	SNP	C	TCGA-OR-A5L6-01A-11D-A29I-10	25169843	94821064	40713683	58	9496										
CDHR5	53841	bcgsc.ca	37	chr11	621634	621634	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0188679245283019	2	1	0.331619894415115	1.30437158469945	0	0.428571428571429	1	0	tcagcctgcagttgcgtctcGgggatgacggtggagttcac	15	10	3	1	rs2740373	byfrequency	TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	.	CDHR5-90	NM_031264	exon5	c.C435T	p.P145P	CGTCTCGGGGATG	.	135	5	131	0	G|0.783;A|0.217	0	0	0	0	0	A	621634	G	A	621634	2	1	46	1	0	0	0	0	0	0	0	1	3128	1103	39	1		1	CDHR5	11	621634	Silent	SNP	G	TCGA-OR-A5L6-01A-11D-A29I-10		621634	134384882	59	9497										
OR52E2	119678	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	5080032	5080032	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0188679245283019	2	1	0.331619894415115	1.30437158469945	0	0.428571428571429	1	0	aacatagagattggctaggaGtatatggatatagcggggca	14	4	0	1	novel		TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	.	OR52E2-71	NM_001005164	exon1	c.C826T	p.L276F	CTAGGAGTATATG	.	140	59	155	0	.	0	0	0	0	0	A	5080032	G	A	5080032	3	1	46	1	0	0	0	0	1	0	0	0	11144	1029	36	3	154	3	OR52E2	11	5080032	Missense_Mutation	SNP	G	TCGA-OR-A5L6-01A-11D-A29I-10	4458398	5080032	129926484	60	9498										
NAV2	89797	bcgsc.ca	37	chr11	20067064	20067064	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0188679245283019	2	1	0.331619894415115	1.30437158469945	0	0.428571428571429	1	0	ggtctggtcaaccaaacagaCaaggagaaaggcatctcatc	10	10	3	2	rs7125647	byfrequency	TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	.	NAV2-96	NM_001244963	exon15	c.C3819T	p.D1273D	AACAGACAAGGAG	.	108	6	104	1	C|0.383;T|0.617	0	0	0	0	0	T	20067064	C	T	20067064	2	4	46	1	0	0	0	0	0	0	0	1	10212	477	17	3		3	NAV2	11	20067064	Silent	SNP	C	TCGA-OR-A5L6-01A-11D-A29I-10	14987032	20067064	114939452	61	9499										
FOLH1	2346	bcgsc.ca	37	chr11	49204732	49204732	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0188679245283019	2	1	0.331619894415115	1.30437158469945	0	0.428571428571429	1	0	ctgtgcatcatagtatccaaTtggatgaacaggaatacttg	9	7	1	1	rs199782232		TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	.	FOLH1-579	NM_004476	exon7	c.A889G	p.I297V	ATCCAATTGGATG	.	143	8	131	0	.	1	1	0	0	0	C	49204732	T	C	49204732	3	2	46	1	0	0	0	0	1	0	0	0	5998	1493	52	4	1415	4	FOLH1	11	49204732	Missense_Mutation	SNP	T	TCGA-OR-A5L6-01A-11D-A29I-10	29137668	49204732	85801784	62	9500										
OR4A15	81328	bcgsc.ca	37	chr11	55135435	55135435	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0188679245283019	2	1	0.331619894415115	1.30437158469945	0	0.428571428571429	1	0	tccgacacctgagtccaacaCcttcagaagaacacatgaaa	6	13	1	4	rs1425193	byfrequency	TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	.	OR4A15-70	NM_001005275	exon1	c.C76T	p.P26S	CCAACACCTTCAG	.	126	7	113	0	C|0.778;T|0.222	0	0	0	0	0	T	55135435	C	T	55135435	3	4	46	1	0	0	0	0	1	0	0	0	11069	507	18	3	78	3	OR4A15	11	55135435	Missense_Mutation	SNP	C	TCGA-OR-A5L6-01A-11D-A29I-10	5930703	55135435	79871081	63	9501										
OR5D13	390142	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	55541619	55541619	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0188679245283019	2	1	0.331619894415115	1.30437158469945	0	0.428571428571429	1	0	agatgcgatctgcaagtgggCgccagaaaactttctccacc	10	12	2	2	novel		TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	.	OR5D13-71	NM_001001967	exon1	c.C706G	p.R236G	AGTGGGCGCCAGA	.	91	15	75	0	.	0	0	0	0	0	G	55541619	C	G	55541619	3	3	46	1	0	0	0	0	1	0	0	0	11183	768	27	2	708	2	OR5D13	11	55541619	Missense_Mutation	SNP	C	TCGA-OR-A5L6-01A-11D-A29I-10	406184	55541619	79464897	64	9502										
TM7SF2	7108	hgsc.bcm.edu	37	chr11	64880090	64880090	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0188679245283019	2	1	0.331619894415115	1.30437158469945	0	0.428571428571429	1	0	ggtccacccgcgtccctgccGgggctggaggtgctgtggag	18	13	0	0	rs4930284		TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	.	TM7SF2-91	NM_003273	exon2	c.G156C	p.P52P	CCTGCCGGGGCTG	.	8	8	0	0	G|0.005;C|0.995	0	0	0	0	0	C	64880090	G	C	64880090	2	2	46	1	0	0	0	0	0	0	0	1	16011	1103	39	2		2	TM7SF2	11	64880090	Silent	SNP	G	TCGA-OR-A5L6-01A-11D-A29I-10	9338471	64880090	70126426	65	9503										
KRT75	9119	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	52828026	52828026	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0188679245283019	2	1	0.331619894415115	1.30437158469945	0	0.428571428571429	1	0	ccagctgccggggtgatggcCgaggtggtgctgaagcccct	17	12	0	2	novel		TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	.	KRT75-90	NM_004693	exon1	c.G63A	p.S21S	GATGGCCGAGGTG	.	57	17	35	0	.	0	0	0	0	0	T	52828026	C	T	52828026	2	4	46	1	0	0	0	0	0	0	0	1	8509	639	23	1		1	KRT75	12	52828026	Silent	SNP	C	TCGA-OR-A5L6-01A-11D-A29I-10		52828026	81023869	66	9504										
AMDHD1	144193	hgsc.bcm.edu	37	chr12	96337183	96337183	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0188679245283019	2	1	0.331619894415115	1.30437158469945	0	0.428571428571429	1	0	cggcgcgaggcgacatggcaAgcggccacagcctcctgctg	15	15	0	0	rs7955450	byfrequency	TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	.	AMDHD1-90	NM_152435	exon1	c.A7G	p.S3G	ATGGCAAGCGGCC	.	31	13	0	0	A|0.273;G|0.727	0	0	0	0	0	G	96337183	A	G	96337183	3	3	46	1	0	0	0	0	1	0	0	0	567	72	3	4	9	4	AMDHD1	12	96337183	Missense_Mutation	SNP	A	TCGA-OR-A5L6-01A-11D-A29I-10	43509157	96337183	37514712	67	9505										
AMDHD1	144193	hgsc.bcm.edu	37	chr12	96337225	96337225	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0188679245283019	2	1	0.331619894415115	1.30437158469945	0	0.428571428571429	1	0	agaacgcgcagcaagtggtgCtggtgtgcgcccgcggcgag	18	11	0	1	rs1436121	byfrequency	TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	.	AMDHD1-90	NM_152435	exon1	c.C49T	p.L17L	GTGGTGCTGGTGT	.	52	25	0	0	C|0.752;T|0.248	0	0	0	0	0	T	96337225	C	T	96337225	2	4	46	1	0	0	0	0	0	0	0	1	567	796	28	3		3	AMDHD1	12	96337225	Silent	SNP	C	TCGA-OR-A5L6-01A-11D-A29I-10	42	96337225	37514670	68	9506										
ATXN2	6311	hgsc.bcm.edu	37	chr12	112036797	112036797	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0188679245283019	2	1	0.331619894415115	1.30437158469945	0	0.428571428571429	1	0	tgctgttgctgctgctgctgCtgctgctgctgctgctgctg	14	12	0	0	rs4098854		TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	.	ATXN2-136	NM_002973	exon1	c.G522A	p.Q174Q	CTGCTGCTGCTGC	.	7	7	0	0	C|0.429;T|0.571	36	34	2	0	0	T	112036797	C	T	112036797	2	4	46	1	0	0	0	0	0	0	0	1	1212	796	28	3		3	ATXN2	12	112036797	Silent	SNP	C	TCGA-OR-A5L6-01A-11D-A29I-10	15699572	112036797	21815098	69	9507										
FAM101A	144347	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	124798764	124798764	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0188679245283019	2	1	0.331619894415115	1.30437158469945	0	0.428571428571429	1	0	ctctgaggtcaagtacgcctCggagaagcatttccaggaca	11	11	2	2	novel		TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	.	FAM101A-68	NM_181709	exon3	c.C101T	p.S34L	ACGCCTCGGAGAA	.	502	79	231	0	.	0	0	0	0	0	T	124798764	C	T	124798764	3	4	46	1	0	0	0	0	1	0	0	0	5396	893	31	1	107	1	FAM101A	12	124798764	Missense_Mutation	SNP	C	TCGA-OR-A5L6-01A-11D-A29I-10	12761967	124798764	9053131	70	9508										
TUBA3C	7278	bcgsc.ca	37	chr13	19751262	19751262	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0188679245283019	2	1	0.331619894415115	1.30437158469945	0	0.428571428571429	1	0	gcattggtgatctcagccacGgacagctgctcgtggtaggc	14	11	1	1	rs117337915	byfrequency	TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	.	TUBA3C-95	NM_006001	exon4	c.C861T	p.S287S	AGCCACGGACAGC	.	215	25	253	4	G|0.999;A|0.001	0	0	0	0	0	A	19751262	G	A	19751262	2	1	46	1	0	0	0	0	0	0	0	1	16784	1103	39	1		1	TUBA3C	13	19751262	Silent	SNP	G	TCGA-OR-A5L6-01A-11D-A29I-10		19751262	95418616	71	9509										
UBL3	5412	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr13	30346294	30346294	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0188679245283019	2	1	0.331619894415115	1.30437158469945	0	0.428571428571429	1	0	aaatcgtccttgataaataaGtcgtagaatatttggactgc	8	6	0	2	novel		TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	.	UBL3-90	NM_007106	exon3	c.C178A	p.L60I	AAATAAGTCGTAG	.	29	12	71	0	.	0	0	0	0	0	T	30346294	G	T	30346294	3	4	46	1	0	0	0	0	1	0	0	0	16924	1029	36	3	187	3	UBL3	13	30346294	Missense_Mutation	SNP	G	TCGA-OR-A5L6-01A-11D-A29I-10	10595032	30346294	84823584	72	9510										
RTN1	6252	broad.mit.edu;bcgsc.ca	37	chr14	60194375	60194375	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0188679245283019	2	1	0.331619894415115	1.30437158469945	0	0.428571428571429	1	0	gcctttcccctgggattctgCagcagatggttctgtcgtcc	11	13	2	1	rs1132362	byfrequency	TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	.	RTN1-516	NM_021136	exon3	c.G1027C	p.A343P	ATTCTGCAGCAGA	.	82	4	83	0	C|0.988;G|0.012	0	0	0	0	0	G	60194375	C	G	60194375	3	3	46	1	0	0	0	0	1	0	0	0	13760	710	25	3	1396	3	RTN1	14	60194375	Missense_Mutation	SNP	C	TCGA-OR-A5L6-01A-11D-A29I-10		60194375	47155165	73	9511										
TMEM63C	57156	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr14	77723002	77723002	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0188679245283019	2	1	0.331619894415115	1.30437158469945	0	0.428571428571429	1	0	gagtggtctgaggggctttgCgagggagctagactcggccc	18	9	1	2	novel		TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	.	.	NM_020431	exon24	c.C2354T	p.A785V	GCTTTGCGAGGGA	.	142	36	132	0	.	0	0	0	0	0	T	77723002	C	T	77723002	3	4	46	1	0	0	0	0	1	0	0	0	16229	768	27	1	2440	1	TMEM63C	14	77723002	Missense_Mutation	SNP	C	TCGA-OR-A5L6-01A-11D-A29I-10	17528627	77723002	29626538	74	9512										
FLRT2	23768	bcgsc.ca	37	chr14	86089315	86089315	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0188679245283019	2	1	0.331619894415115	1.30437158469945	0	0.428571428571429	1	0	cctggttaacttagagccccGatccacctatcggatttgtt	8	12	0	1	rs17646457	byfrequency	TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	.	FLRT2-94	NM_013231	exon2	c.G1457A	p.R486Q	AGCCCCGATCCAC	.	255	8	261	3	G|0.899;A|0.101	0	0	0	0	0	A	86089315	G	A	86089315	3	1	46	1	0	0	0	0	1	0	0	0	5958	1058	37	1	1459	1	FLRT2	14	86089315	Missense_Mutation	SNP	G	TCGA-OR-A5L6-01A-11D-A29I-10	8366313	86089315	21260225	75	9513										
MPI	4351	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr15	75185139	75185139	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0188679245283019	2	1	0.331619894415115	1.30437158469945	0	0.428571428571429	1	0	gaggagattgtaacctttctAaagagtaagttgggcagaat	12	4	1	3	novel		TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	.	MPI-92	NM_002435	exon4	c.A483G	p.L161L	CTTTCTAAAGAGT	.	103	33	128	0	.	0	0	0	0	0	G	75185139	A	G	75185139	2	3	46	1	0	0	0	0	0	0	0	1	9757	349	13	4		4	MPI	15	75185139	Silent	SNP	A	TCGA-OR-A5L6-01A-11D-A29I-10		75185139	27346253	76	9514										
PKD1	5310	hgsc.bcm.edu	37	chr16	2140972	2140972	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0188679245283019	2	1	0.331619894415115	1.30437158469945	0	0.428571428571429	1	0	tggtcgaagctagtgaagcgGcgcgggcggccgcgcacgaa	18	11	0	1	rs77634115		TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	.	PKD1-91	NM_001009944	exon43	c.C11916T	p.R3972R	GAAGCGGCGCGGG	.	22	12	1	0	G|0.989;A|0.011	8	4	4	0	0	A	2140972	G	A	2140972	2	1	46	1	0	0	0	0	0	0	0	1	11992	1190	42	3		3	PKD1	16	2140972	Silent	SNP	G	TCGA-OR-A5L6-01A-11D-A29I-10		2140972	88213781	77	9515										
AMDHD2	51005	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr16	2580311	2580311	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.0188679245283019	2	1	0.331619894415115	1.30437158469945	0	0.428571428571429	1	0	ggtgctggagggcagtatggGaggcaccagtgtgccctgct	18	9	0	0	novel		TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	.	AMDHD2-155	NM_001145815	exon11	c.G1336C	p.E446Q	GTATGGGAGGCAC	.	144	31	62	0	.	13	13	0	0	0	C	2580311	G	C	2580311	3	2	46	1	0	0	0	0	1	0	0	0	568	1175	41	3	1416	3	AMDHD2	16	2580311	Missense_Mutation	SNP	G	TCGA-OR-A5L6-01A-11D-A29I-10	439339	2580311	87774442	78	9516										
FA2H	79152	broad.mit.edu;bcgsc.ca	37	chr16	74752999	74752999	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0188679245283019	2	1	0.331619894415115	1.30437158469945	0	0.428571428571429	1	0	gtactcgatgaggctccagaGgaatgtccccagcatgaaga	12	10	0	4	novel		TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	.	FA2H-90	NM_024306	exon5	c.C673T	p.L225F	TCCAGAGGAATGT	.	170	6	107	0	.	0	0	0	0	0	A	74752999	G	A	74752999	3	1	46	1	0	0	0	0	1	0	0	0	5368	1000	35	3	457	3	FA2H	16	74752999	Missense_Mutation	SNP	G	TCGA-OR-A5L6-01A-11D-A29I-10	72172688	74752999	15601754	79	9517										
CDH13	1012	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	83378514	83378514	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0188679245283019	2	1	0.331619894415115	1.30437158469945	0	0.428571428571429	1	0	ggcaaaactctcgaggggccGgtgcctctggaagtcattgt	14	10	3	0	rs201452763	alternate_allele	TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	.	CDH13-67	NM_001220488	exon7	c.G825T	p.P275P	GGGGCCGGTGCCT	.	114	17	69	0	.	0	0	0	0	0	T	83378514	G	T	83378514	2	4	46	1	0	0	0	0	0	0	0	1	3105	1103	39	2		2	CDH13	16	83378514	Silent	SNP	G	TCGA-OR-A5L6-01A-11D-A29I-10	8625515	83378514	6976239	80	9518										
ZFPM1	161882	hgsc.bcm.edu	37	chr16	88599697	88599705	+	In_Frame_Del	DEL	AGCCTCTGG	AGCCTCTGG	-													0.0188679245283019	2	1	0.331619894415115	1.30437158469945	0	0.428571428571429	1	0	caacggagaggccagagcggAgcctctggcccagaatggag					novel		TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	AGCCTCTGG	AGCCTCTGG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	.	ZFPM1-90	NM_153813	exon10	c.1331_1339del	p.444_447del	GAGCGGAGCCTCT	.	29	0	4	0	.	0	0	0	0	0	-	88599705	AGCCTCTGG	-	88599697	7	5	46	1	0	1	0	1	0	0	0	0	17694	304	11	0	1369	0	ZFPM1	16	88599697	In_Frame_Del	DEL	AGCCTCTGG	TCGA-OR-A5L6-01A-11D-A29I-10	5221183	88599697	1755056	81	9519										
MYH8	4626	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	10310241	10310241	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0188679245283019	2	1	0.331619894415115	1.30437158469945	0	0.428571428571429	1	0	tttcattgggaatgatacacCgtacgaagtgagggtgtgtg	14	5	1	2	rs28932773		TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	.	MYH8-101	NM_002472	exon18	c.G2021A	p.R674Q	ATACACCGTACGA	.	116	27	139	0	.	0	0	0	0	0	T	10310241	C	T	10310241	3	4	46	1	0	0	0	0	1	0	0	0	10069	652	23	1	3884	1	MYH8	17	10310241	Missense_Mutation	SNP	C	TCGA-OR-A5L6-01A-11D-A29I-10		10310241	70884969	82	9520										
EPN3	55040	broad.mit.edu	37	chr17	48614456	48614456	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0188679245283019	2	1	0.331619894415115	1.30437158469945	0	0.428571428571429	1	0	cgaggactacagccgctcccGgggctccccgtcctcctaca	10	19	0	0	rs149893296	byfrequency	TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	.	EPN3-91	NM_017957	exon2	c.G539A	p.R180Q	GCTCCCGGGGCTC	.	94	4	68	0	G|0.996;A|0.004	0	0	0	0	0	A	48614456	G	A	48614456	3	1	46	1	0	0	0	0	1	0	0	0	5200	1116	39	1	541	1	EPN3	17	48614456	Missense_Mutation	SNP	G	TCGA-OR-A5L6-01A-11D-A29I-10	38304215	48614456	32580754	83	9521										
CPLX4	339302	hgsc.bcm.edu;bcgsc.ca	37	chr18	56979929	56979929	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0188679245283019	2	1	0.331619894415115	1.30437158469945	0	0.428571428571429	1	0	tgtcttacctttgggagcctGtatttttctctgagatgaac	9	8	2	2	novel		TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	.	CPLX4-91	NM_181654	exon2	c.C243A	p.Y81X	GAGCCTGTATTTT	.	60	4	71	0	.	0	0	0	0	0	T	56979929	G	T	56979929	4	4	46	1	0	0	0	0	0	1	0	0	3813	1372	48	3	247	3	CPLX4	18	56979929	Nonsense_Mutation	SNP	G	TCGA-OR-A5L6-01A-11D-A29I-10		56979929	21097319	84	9522										
ATP9B	374868	hgsc.bcm.edu	37	chr18	76829525	76829525	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0188679245283019	2	1	0.331619894415115	1.30437158469945	0	0.428571428571429	1	0	ggccgggagccgaccggcacAgcaggtaaccgaggcggcac	17	14	0	0	rs4078115		TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	.	ATP9B-93	NM_198531	exon1	c.A115G	p.S39G	CGGCACAGCAGGT	.	14	13	2	0	A|0.693;G|0.307	0	0	0	0	0	G	76829525	A	G	76829525	3	3	46	1	0	0	0	0	1	0	0	0	1200	188	7	4	117	4	ATP9B	18	76829525	Missense_Mutation	SNP	A	TCGA-OR-A5L6-01A-11D-A29I-10	19849596	76829525	1247723	85	9523										
KHSRP	8570	broad.mit.edu	37	chr19	6417772	6417772	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0188679245283019	2	1	0.331619894415115	1.30437158469945	0	0.428571428571429	1	0	tgcttgaactgtatccgcacGccagcatcattctggatctt	8	12	3	1	novel		TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	.	KHSRP-226	NM_003685	exon11	c.C1059T	p.G353G	CCGCACGCCAGCA	.	131	6	89	1	.	12	12	0	0	0	A	6417772	G	A	6417772	2	1	46	1	0	0	0	0	0	0	0	1	8172	1074	38	1		1	KHSRP	19	6417772	Silent	SNP	G	TCGA-OR-A5L6-01A-11D-A29I-10		6417772	52711211	86	9524										
EVI5L	115704	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr19	7915003	7915004	+	Frame_Shift_Ins	INS	-	-	T													0.0188679245283019	2	1	0.331619894415115	1.30437158469945	0	0.428571428571429	1	0	ctatcagttcgagtacatgcINStgcaggtgagcagggccgca					novel		TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	.	EVI5L-91	NM_001159944	exon5	c.748_749insT	p.L250fs	TACATGCTGCAGG	.	88	15	70	0	.	0	0	0	0	0	T	7915004	-	T	7915003	7	5	46	1	0	1	1	0	0	0	0	0	5303	796	28	0	766	0	EVI5L	19	7915003	Frame_Shift_Ins	INS	-	TCGA-OR-A5L6-01A-11D-A29I-10	1497231	7915003	51213980	87	9525										
MUC16	94025	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	9063150	9063150	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.0188679245283019	2	1	0.331619894415115	1.30437158469945	0	0.428571428571429	1	0	aaaagccaggagttgatgtgGagacactcgtatcctccatg	11	9	0	2	novel		TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	.	MUC16-566	NM_024690	exon3	c.C24296G	p.S8099C	GATGTGGAGACAC	.	291	105	234	1	.	0	0	0	0	0	C	9063150	G	C	9063150	3	2	46	1	0	0	0	0	1	0	0	0	10001	1174	41	3	19555	3	MUC16	19	9063150	Missense_Mutation	SNP	G	TCGA-OR-A5L6-01A-11D-A29I-10	1148147	9063150	50065833	88	9526										
LPPR2	0	broad.mit.edu	37	chr19	11472132	11472132	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0188679245283019	2	1	0.331619894415115	1.30437158469945	0	0.428571428571429	1	0	ccttcccctgcaaggatgcgGccctctgcgcctacgcggtc	11	18	1	0	novel		TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	.	LPPR2-153	NM_022737	exon6	c.G631T	p.A211S	GATGCGGCCCTCT	.	106	9	23	0	.	1	1	0	0	0	T	11472132	G	T	11472132	3	4	46	1	0	0	0	0	1	0	0	0	8952	1203	42	3	645	3	LPPR2	19	11472132	Missense_Mutation	SNP	G	TCGA-OR-A5L6-01A-11D-A29I-10	2408982	11472132	47656851	89	9527										
EMR2	30817	bcgsc.ca	37	chr19	14877820	14877820	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0188679245283019	2	1	0.331619894415115	1.30437158469945	0	0.428571428571429	1	0	cttcgggtcctcaggtttgaGcttgaagccaggcaggcact	13	11	1	2	rs74182239		TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	.	EMR2-524	NM_001271052	exon5	c.C457T	p.L153F	GTTTGAGCTTGAA	.	35	26	118	8	A|1.000;|0.000	0	0	0	0	0	A	14877820	G	A	14877820	3	1	46	1	0	0	0	0	1	0	0	0	5118	971	34	3	2078	3	EMR2	19	14877820	Missense_Mutation	SNP	G	TCGA-OR-A5L6-01A-11D-A29I-10	3405688	14877820	44251163	90	9528										
RHPN2	85415	ucsc.edu	37	chr19	33517507	33517507	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0188679245283019	2	1	0.331619894415115	1.30437158469945	0	0.428571428571429	1	0	gaagctcagctccagccgcaCttgctcccgcacctttgagt	9	16	1	1	novel		TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	.	RHPN2-516	NM_033103	exon3	c.G217A	p.V73M	GCCGCACTTGCTC	.	30	8	20	0	.	0	0	0	0	0	T	33517507	C	T	33517507	3	4	46	1	0	0	0	0	1	0	0	0	13386	565	20	3	1895	3	RHPN2	19	33517507	Missense_Mutation	SNP	C	TCGA-OR-A5L6-01A-11D-A29I-10	18639687	33517507	25611476	91	9529										
CATSPERG	57828	broad.mit.edu	37	chr19	38827960	38827960	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0188679245283019	2	1	0.331619894415115	1.30437158469945	0	0.428571428571429	1	0	gtgggccctgctggcagtgcTcctggcgtcgtggaggctgt	18	11	0	0	rs2302182	byfrequency	TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	.	CATSPERG-92	NM_021185	exon2	c.T86C	p.L29P	CAGTGCTCCTGGC	.	115	3	85	0	T|0.855;C|0.145	1	1	0	0	0	C	38827960	T	C	38827960	3	2	46	1	0	0	0	0	1	0	0	0	2698	1551	54	4	88	4	CATSPERG	19	38827960	Missense_Mutation	SNP	T	TCGA-OR-A5L6-01A-11D-A29I-10	5310453	38827960	20301023	92	9530										
PTPRA	5786	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr20	2945574	2945574	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0188679245283019	2	1	0.331619894415115	1.30437158469945	0	0.428571428571429	1	0	gaaccagttaaagaagaggcCaaaacttcaaatccaacttc	6	10	1	2	novel		TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	.	PTPRA-227	NM_002836	exon9	c.C141G	p.A47A	AGAGGCCAAAACT	.	159	28	87	0	.	1	0	1	0	0	G	2945574	C	G	2945574	2	3	46	1	0	0	0	0	0	0	0	1	12830	581	21	3		3	PTPRA	20	2945574	Silent	SNP	C	TCGA-OR-A5L6-01A-11D-A29I-10		2945574	60079946	93	9531										
ADAM33	80332	hgsc.bcm.edu	37	chr20	3654433	3654433	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0188679245283019	2	1	0.331619894415115	1.30437158469945	0	0.428571428571429	1	0	tggggccgctgcgcccacagCccccggcgccactgcaggaa	14	18	0	0	rs2271511	byfrequency	TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	.	ADAM33-291	NM_025220	exon9	c.G864A	p.G288G	CCACAGCCCCCGG	.	20	9	0	0	C|0.751;T|0.249	0	0	0	0	0	T	3654433	C	T	3654433	2	4	46	1	0	0	0	0	0	0	0	1	250	726	26	3		3	ADAM33	20	3654433	Silent	SNP	C	TCGA-OR-A5L6-01A-11D-A29I-10	708859	3654433	59371087	94	9532										
INSM1	3642	hgsc.bcm.edu	37	chr20	20348962	20348962	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0188679245283019	2	1	0.331619894415115	1.30437158469945	0	0.428571428571429	1	0	aagaagtccacgcccgtttcCtaccgggtccgcggcggcga	13	15	0	1	rs111558392	byfrequency	TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	.	INSM1-91	NM_002196	exon1	c.C51T	p.S17S	CGTTTCCTACCGG	.	11	5	0	0	C|0.912;T|0.088	0	0	0	0	0	T	20348962	C	T	20348962	2	4	46	1	0	0	0	0	0	0	0	1	7792	668	24	3		3	INSM1	20	20348962	Silent	SNP	C	TCGA-OR-A5L6-01A-11D-A29I-10	16694529	20348962	42676558	95	9533										
PIGU	128869	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr20	33225690	33225693	+	Frame_Shift_Del	DEL	CTTT	CTTT	-													0.0188679245283019	2	1	0.331619894415115	1.30437158469945	0	0.428571428571429	1	0	gaatacttacaacagggccaCtttcaaagggatgtaacgca					novel		TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	CTTT	CTTT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	.	PIGU-226	NM_080476	exon5	c.415_418del	p.139_140del	GGGCCACTTTCAA	.	159	35	90	0	.	0	0	0	0	0	-	33225693	CTTT	-	33225690	7	5	46	1	0	1	0	1	0	0	0	0	11929	565	20	0	921	0	PIGU	20	33225690	Frame_Shift_Del	DEL	CTTT	TCGA-OR-A5L6-01A-11D-A29I-10	12876728	33225690	29799830	96	9534										
ARFGEF2	10564	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr20	47605959	47605959	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0188679245283019	2	1	0.331619894415115	1.30437158469945	0	0.428571428571429	1	0	ccactcacctggaccatgtcCggccaatgttcaaagtgagt	9	13	2	1	novel		TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	.	ARFGEF2-358	NM_006420	exon19	c.C2671T	p.R891W	CATGTCCGGCCAA	.	191	96	83	0	.	0	0	0	0	0	T	47605959	C	T	47605959	3	4	46	1	0	0	0	0	1	0	0	0	853	643	23	1	2745	1	ARFGEF2	20	47605959	Missense_Mutation	SNP	C	TCGA-OR-A5L6-01A-11D-A29I-10	14380269	47605959	15419561	97	9535										
B4GALT5	9334	ucsc.edu;bcgsc.ca	37	chr20	48252968	48252968	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0188679245283019	2	1	0.331619894415115	1.30437158469945	0	0.428571428571429	1	0	gaggccatccagcccttgccGttcttttgacttcctcagca	8	15	2	1	novel		TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	.	B4GALT5-91	NM_004776	exon9	c.C1048T	p.R350W	CTTGCCGTTCTTT	.	473	193	234	2	.	4	3	1	0	0	A	48252968	G	A	48252968	3	1	46	1	0	0	0	0	1	0	0	0	1275	1144	40	1	122	1	B4GALT5	20	48252968	Missense_Mutation	SNP	G	TCGA-OR-A5L6-01A-11D-A29I-10	647009	48252968	14772552	98	9536										
CTCFL	140690	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr20	56090878	56090878	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0188679245283019	2	1	0.331619894415115	1.30437158469945	0	0.428571428571429	1	0	gtgggatcggacatggcgctTcaatttacttgcctaataaa	10	8	1	0	novel		TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	.	CTCFL-292	NM_001269044	exon5	c.A1072G	p.K358E	GGCGCTTCAATTT	.	79	9	43	0	.	0	0	0	0	0	C	56090878	T	C	56090878	3	2	46	1	0	0	0	0	1	0	0	0	4007	1792	62	4	943	4	CTCFL	20	56090878	Missense_Mutation	SNP	T	TCGA-OR-A5L6-01A-11D-A29I-10	7837910	56090878	6934642	99	9537										
KRTAP10-4	386672	ucsc.edu	37	chr21	45993851	45993851	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0188679245283019	2	1	0.331619894415115	1.30437158469945	0	0.428571428571429	1	0	ccctgctgcccagtgacctgCgagcccagcccctgccaatc	9	20	0	1	rs543299		TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	.	KRTAP10-4-90	NM_198687	exon1	c.C216T	p.C72C	GACCTGCGAGCCC	.	39	25	38	6	C|1.000;|0.000	0	0	0	0	0	T	45993851	C	T	45993851	2	4	46	1	0	0	0	0	0	0	0	1	8532	776	27	1		1	KRTAP10-4	21	45993851	Silent	SNP	C	TCGA-OR-A5L6-01A-11D-A29I-10		45993851	2136044	100	9538										
GSTT2	2953	bcgsc.ca	37	chr22	24325062	24325062	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0188679245283019	2	1	0.331619894415115	1.30437158469945	0	0.428571428571429	1	0	ccactctctgcccccatcagGtgttggggccactcattggg	11	15	3	0	rs78284383	byfrequency	TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	.	GSTT2-68	NM_000854	exon4	c.G352A	p.V118M	CATCAGGTGTTGG	.	260	7	547	3	G|0.850;A|0.151	0	0	0	0	0	A	24325062	G	A	24325062	3	1	46	1	0	0	0	0	1	0	0	0	6867	1275	44	3	1121	3	GSTT2	22	24325062	Missense_Mutation	SNP	G	TCGA-OR-A5L6-01A-11D-A29I-10		24325062	26979504	101	9539										
ARSD	414	bcgsc.ca	37	chrX	2836037	2836037	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0188679245283019	2	1	0.331619894415115	1.30437158469945	0	0.428571428571429	1	0	tgactgctctcgcggagacaGagaagaaaccgcaggtctgg	14	10	2	4	rs211653	byfrequency	TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	.	ARSD-130	NM_001669	exon5	c.C671G	p.S224C	GAGACAGAGAAGA	.	76	4	93	0	0|0.004;C|0.405	0	0	0	0	0	C	2836037	G	C	2836037	3	2	46	1	0	0	0	0	1	0	0	0	990	942	33	3	1287	3	ARSD	23	2836037	Missense_Mutation	SNP	G	TCGA-OR-A5L6-01A-11D-A29I-10		2836037	152434523	102	9540										
ASB11	140456	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	15332559	15332559	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0188679245283019	2	1	0.331619894415115	1.30437158469945	0	0.428571428571429	1	0	atggtccggaccttctgataCgttctgaaacttcacaattc	7	11	3	2	novel		TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	.	ASB11-289	NM_001012428	exon1	c.G50C	p.R17P	CTGATACGTTCTG	.	35	15	51	0	.	0	0	0	0	0	G	15332559	C	G	15332559	3	3	46	1	0	0	0	0	1	0	0	0	1016	536	19	2	886	2	ASB11	23	15332559	Missense_Mutation	SNP	C	TCGA-OR-A5L6-01A-11D-A29I-10	12496522	15332559	139938001	103	9541										
DMD	1756	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chrX	32407770	32407770	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0188679245283019	2	1	0.331619894415115	1.30437158469945	0	0.428571428571429	1	0	ctggaataatcgaaacttcaTggagacatcttgtaattttt	7	6	2	1	novel		TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	.	DMD-265	NM_004006	exon32	c.A4366C	p.M1456L	ACTTCATGGAGAC	.	38	15	46	0	.	0	0	0	0	0	G	32407770	T	G	32407770	3	3	46	1	0	0	0	0	1	0	0	0	4591	1464	51	5	7031	5	DMD	23	32407770	Missense_Mutation	SNP	T	TCGA-OR-A5L6-01A-11D-A29I-10	17075211	32407770	122862790	104	9542										
TCEAL3	85012	broad.mit.edu	37	chrX	102864220	102864220	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0188679245283019	2	1	0.331619894415115	1.30437158469945	0	0.428571428571429	1	0	ggcaggtccgaaggtgagggCaagccacaaggcgagggcaa	18	9	0	1	novel		TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	.	TCEAL3-90	NM_001006933	exon3	c.C228A	p.G76G	TGAGGGCAAGCCA	.	131	22	75	12	.	28	27	1	0	0	A	102864220	C	A	102864220	2	1	46	1	0	0	0	0	0	0	0	1	15709	697	25	3		3	TCEAL3	23	102864220	Silent	SNP	C	TCGA-OR-A5L6-01A-11D-A29I-10	70456450	102864220	52406340	105	9543										
MCF2	4168	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chrX	138713564	138713564	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0188679245283019	2	1	0.331619894415115	1.30437158469945	0	0.428571428571429	1	0	gacaacatacatttctgaagAtgatccattcactgtggcag	8	9	2	3	novel		TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	.	MCF2-227	NM_001171876	exon6	c.T458C	p.I153T	CTGAAGATGATCC	.	144	8	110	0	.	0	0	0	0	0	G	138713564	A	G	138713564	3	3	46	1	0	0	0	0	1	0	0	0	9406	333	12	4	2671	4	MCF2	23	138713564	Missense_Mutation	SNP	A	TCGA-OR-A5L6-01A-11D-A29I-10	35849344	138713564	16556996	106	9544										
IL9R	3581	broad.mit.edu	37	chrX	155239804	155239804	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0188679245283019	2	1	0.331619894415115	1.30437158469945	0	0.428571428571429	1	0	tcagagggcagcaggagcagCagcagcagcagcagcagcaa	15	11	1	1	rs71382248		TCGA-OR-A5L6-01A-11D-A29I-10	TCGA-OR-A5L6-10C-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d6782167-c280-47be-9306-dd6794cd6c34	f9f463db-8197-4665-b7a3-a2f02f00e992	.	IL9R-40	NM_002186	exon9	c.C1296G	p.S432R	GAGCAGCAGCAGC	.	127	4	108	0	C|1.000;|0.000	0	0	0	0	0	G	155239804	C	G	155239804	3	3	46	1	0	0	0	0	1	0	0	0	7729	709	25	3	1330	3	IL9R	23	155239804	Missense_Mutation	SNP	C	TCGA-OR-A5L6-01A-11D-A29I-10	16526240	155239804	30756	107	9545										
ST6GALNAC5	81849	broad.mit.edu	37	chr1	77334277	77334279	+	In_Frame_Del	DEL	GCA	GCA	-													0.0112359550561798	1	1	0.368808049535604	0	0.522478070175439	1	1	0	ggccagaaggagcggcccccGcagcagcagcagcagcagca					rs113832855	alternate_allele	TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	.	ST6GALNAC5-92	NM_030965	exon2	c.111_113del	p.37_38del	GCCCCCGCAGCAG	.	194	8	87	0	GCA|0.500;-|0.500	0	0	0	0	0	-	77334279	GCA	-	77334277	7	5	47	1	0	1	0	1	0	0	0	0	15264	1074	38	0	117	0	ST6GALNAC5	1	77334277	In_Frame_Del	DEL	GCA	TCGA-OR-A5L9-01A-11D-A29I-10		77334277	171916344	1	9546										
BCL11A	53335	broad.mit.edu	37	chr2	60688968	60688968	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0112359550561798	1	1	0.368808049535604	0	0.522478070175439	1	1	0	gggcggattgcagaggagggAgggggggcgtcgccaggaag	24	6	0	1	novel		TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	.	BCL11A-1149	NM_018014	exon4	c.T1079C	p.L360P	GGAGGGAGGGGGG	.	87	9	59	5	.	0	0	0	0	0	G	60688968	A	G	60688968	3	3	47	1	0	0	0	0	1	0	0	0	1364	304	11	4	1538	4	BCL11A	2	60688968	Missense_Mutation	SNP	A	TCGA-OR-A5L9-01A-11D-A29I-10		60688968	182510405	2	9547										
COPS7B	64708	broad.mit.edu;bcgsc.ca	37	chr2	232659056	232659056	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0112359550561798	1	1	0.368808049535604	0	0.522478070175439	1	1	0	tcgtgagcttggcatcaagaAtgaaggtacggtactgagcc	13	8	1	4	novel		TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	.	COPS7B-228	NM_022730	exon4	c.A322G	p.M108V	TCAAGAATGAAGG	.	58	4	90	0	.	0	0	0	0	0	G	232659056	A	G	232659056	3	3	47	1	0	0	0	0	1	0	0	0	3745	101	4	4	332	4	COPS7B	2	232659056	Missense_Mutation	SNP	A	TCGA-OR-A5L9-01A-11D-A29I-10	171970088	232659056	10540317	3	9548										
FBLN2	2199	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr3	13612958	13612958	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0112359550561798	1	1	0.368808049535604	0	0.522478070175439	1	1	0	cctgggcaaggctgctctcgTcccaactcaggccgtgcctg	12	16	2	0	novel		TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	.	FBLN2-91	NM_001998	exon2	c.T1103C	p.V368A	CTCTCGTCCCAAC	.	110	8	33	0	.	0	0	0	0	0	C	13612958	T	C	13612958	3	2	47	1	0	0	0	0	1	0	0	0	5718	1667	58	4		4	FBLN2	3	13612958	Missense_Mutation	SNP	T	TCGA-OR-A5L9-01A-11D-A29I-10		13612958	184409472	4	9549										
HHATL	57467	bcgsc.ca	37	chr3	42735150	42735150	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0112359550561798	1	1	0.368808049535604	0	0.522478070175439	1	1	0	ccactctgccagtttttgcaTccagagctcaaagttgaggc	9	12	2	2	rs11079	bycluster;byfrequency;by1000genomes	TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	.	HHATL-93	NM_020707	exon10	c.A1207G	p.M403V	TTTGCATCCAGAG	.	117	8	111	0	T|0.381;C|0.619	3	3	0	0	0	C	42735150	T	C	42735150	3	2	47	1	0	0	0	0	1	0	0	0	7111	1435	50	4	319	4	HHATL	3	42735150	Missense_Mutation	SNP	T	TCGA-OR-A5L9-01A-11D-A29I-10	29122192	42735150	155287280	5	9550										
NBEAL2	23218	broad.mit.edu	37	chr3	47036675	47036675	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0112359550561798	1	1	0.368808049535604	0	0.522478070175439	1	1	0	ggctctgtgacagctgccctGccagccgtgccacctgtgtg	13	15	1	1	novel		TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	.	NBEAL2-69	NM_015175	exon13	c.G1450T	p.A484S	TGCCCTGCCAGCC	.	97	9	23	0	.	0	0	0	0	0	T	47036675	G	T	47036675	3	4	47	1	0	0	0	0	1	0	0	0	10217	1319	46	3	1500	3	NBEAL2	3	47036675	Missense_Mutation	SNP	G	TCGA-OR-A5L9-01A-11D-A29I-10	4301525	47036675	150985755	6	9551										
LRIG1	26018	hgsc.bcm.edu	37	chr3	66550756	66550756	+	Missense_Mutation	SNP	G	G	C													0.0112359550561798	1	1	0.368808049535604	0	0.522478070175439	1	1	0	ggtcaccggctccagccgaaGcaaaagcagccagagaagga					rs1403625		TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	.	LRIG1-230	NM_015541	exon1	c.C76G	p.L26V	GCCGAAGCAAAAG	.	8	6	0	0	G|0.237;C|0.763	0	0	0	0	0	C	66550756	G	C	66550756	3	2	47	1	0	0	0	0	1	0	0	0	8971	971	34	3	3281	3	LRIG1	3	66550756	Missense_Mutation	SNP	G	TCGA-OR-A5L9-01A-11D-A29I-10	19514081	66550756	131471674	7	9552	115	2								
LRIG1	26018	hgsc.bcm.edu	37	chr3	66550762	66550762	+	Missense_Mutation	SNP	G	G	C													0.0112359550561798	1	1	0.368808049535604	0	0.522478070175439	1	1	0	cggctccagccgaagcaaaaGcagccagagaaggagaaggc					rs1403626	byfrequency	TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	.	LRIG1-230	NM_015541	exon1	c.C70G	p.L24V	GCAAAAGCAGCCA	.	8	6	1	0	G|0.252;C|0.748	0	0	0	0	0	C	66550762	G	C	66550762	3	2	47	1	0	0	0	0	1	0	0	0	8971	971	34	3	3287	3	LRIG1	3	66550762	Missense_Mutation	SNP	G	TCGA-OR-A5L9-01A-11D-A29I-10	6	66550762	131471668	8	9553	115	2								
PPP2R3A	5523	bcgsc.ca	37	chr3	135722264	135722264	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0112359550561798	1	1	0.368808049535604	0	0.522478070175439	1	1	0	ccaatttatcagtctgtagaAgtcctgttggtgataaagcc	9	8	2	2	rs17197552	byfrequency	TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	.	PPP2R3A-662	NM_002718	exon2	c.A1924G	p.S642G	TGTAGAAGTCCTG	.	125	7	150	0	A|0.779;G|0.221	0	0	0	0	0	G	135722264	A	G	135722264	3	3	47	1	0	0	0	0	1	0	0	0	12420	72	3	4	1926	4	PPP2R3A	3	135722264	Missense_Mutation	SNP	A	TCGA-OR-A5L9-01A-11D-A29I-10	69171502	135722264	62300166	9	9554										
SPON2	10417	hgsc.bcm.edu	37	chr4	1165131	1165131	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0112359550561798	1	1	0.368808049535604	0	0.522478070175439	1	1	0	ggcgggcgccgaaaacaccgCgtgcacgctctgcagcgcct	14	16	1	0	rs193114328	byfrequency	TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	.	SPON2-90	NM_012445	exon3	c.G364A	p.A122T	ACACCGCGTGCAC	.	36	31	0	0	C|0.990;T|0.010	0	0	0	0	0	T	1165131	C	T	1165131	3	4	47	1	0	0	0	0	1	0	0	0	15120	768	27	1	647	1	SPON2	4	1165131	Missense_Mutation	SNP	C	TCGA-OR-A5L9-01A-11D-A29I-10		1165131	189989145	10	9555										
CRIPAK	285464	hgsc.bcm.edu	37	chr4	1388664	1388664	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0112359550561798	1	1	0.368808049535604	0	0.522478070175439	1	1	0	cgcctgctcacacgtgccgaTgcggagtgcccgcctgctca	12	17	2	0	rs199774688	byfrequency	TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	.	CRIPAK-90	NM_175918	exon1	c.T365C	p.M122T	TGCCGATGCGGAG	.	135	8	26	0	T|0.995;C|0.005	2	2	0	0	0	C	1388664	T	C	1388664	3	2	47	1	0	0	0	0	1	0	0	0	3883	1464	51	4	367	4	CRIPAK	4	1388664	Missense_Mutation	SNP	T	TCGA-OR-A5L9-01A-11D-A29I-10	223533	1388664	189765612	11	9556										
HTT	3064	bcgsc.ca	37	chr4	3215835	3215835	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0112359550561798	1	1	0.368808049535604	0	0.522478070175439	1	1	0	cccacgcctgctccctcatcTactgtgtgcacttcatcctg	6	18	3	0	rs362331	byfrequency	TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	.	HTT-281	NM_002111	exon50	c.T6925C	p.Y2309H	CTCATCTACTGTG	.	82	5	109	1	C|0.453;N|0.000	0	0	0	0	0	C	3215835	T	C	3215835	3	2	47	1	0	0	0	0	1	0	0	0	7478	1522	53	4	7123	4	HTT	4	3215835	Missense_Mutation	SNP	T	TCGA-OR-A5L9-01A-11D-A29I-10	1827171	3215835	187938441	12	9557										
ZAR1	326340	hgsc.bcm.edu	37	chr4	48492434	48492434	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0112359550561798	1	1	0.368808049535604	0	0.522478070175439	1	1	0	gcgggcggcagctggcagcaGcgcggcaggggctgccttcc	19	14	0	0	rs10008444		TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	.	ZAR1-90	NM_175619	exon1	c.G126C	p.Q42H	GCAGCAGCGCGGC	.	4	4	0	0	G|0.025;C|0.975	0	0	0	0	0	C	48492434	G	C	48492434	3	2	47	1	0	0	0	0	1	0	0	0	17553	962	34	3	128	3	ZAR1	4	48492434	Missense_Mutation	SNP	G	TCGA-OR-A5L9-01A-11D-A29I-10	45276599	48492434	142661842	13	9558										
DSPP	1834	bcgsc.ca	37	chr4	88537027	88537027	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0112359550561798	1	1	0.368808049535604	0	0.522478070175439	1	1	0	gacagcagtgatagcagtgaCagcagtgacagcagcgacag	14	9	0	3	novel		TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	.	DSPP-90	NM_014208	exon5	c.C3213A	p.D1071E	CAGTGACAGCAGT	.	912	41	812	8	.	0	0	0	0	0	A	88537027	C	A	88537027	3	1	47	1	0	0	0	0	1	0	0	0	4793	477	17	3	3227	3	DSPP	4	88537027	Missense_Mutation	SNP	C	TCGA-OR-A5L9-01A-11D-A29I-10	40044593	88537027	102617249	14	9559										
DSPP	1834	bcgsc.ca	37	chr4	88537090	88537090	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0112359550561798	1	1	0.368808049535604	0	0.522478070175439	1	1	0	gatagcagtgacagcagcaaTagcagtgacagcagcgatag	13	8	0	2	novel		TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	.	DSPP-90	NM_014208	exon5	c.T3276C	p.N1092N	CAGCAATAGCAGT	.	377	51	648	38	.	0	0	0	0	0	C	88537090	T	C	88537090	2	2	47	1	0	0	0	0	0	0	0	1	4793	1403	49	4		4	DSPP	4	88537090	Silent	SNP	T	TCGA-OR-A5L9-01A-11D-A29I-10	63	88537090	102617186	15	9560										
ADH6	130	broad.mit.edu	37	chr4	100137315	100137316	+	Splice_Site	DEL	TA	TA	-													0.0112359550561798	1	1	0.368808049535604	0	0.522478070175439	1	1	0	ttttttttttttttttttttTacctttatgcgaacttcctt					rs56278423	bycluster	TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	.	ADH6-228	.	.	.	.	TTTTTTTACCTTT	.	9	4	4	0	T|1.000	0	0	0	0	0	-	100137316	TA	-	100137315	8	5	47	1	0	1	0	1	0	0	1	0	312	1769	61	0		0	ADH6	4	100137315	Splice_Site	DEL	TA	TCGA-OR-A5L9-01A-11D-A29I-10	11600225	100137315	91016961	16	9561										
COL25A1	84570	bcgsc.ca	37	chr4	109863370	109863370	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0112359550561798	1	1	0.368808049535604	0	0.522478070175439	1	1	0	gtgacaaccacaaaccttgaCggtgaggatctgattactgt	10	9	1	4	rs17531474	byfrequency	TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	.	COL25A1-92	NM_001256074	exon7	c.G547A	p.V183I	CCTTGACGGTGAG	.	345	14	396	3	C|0.940;T|0.060	0	0	0	0	0	T	109863370	C	T	109863370	3	4	47	1	0	0	0	0	1	0	0	0	3690	551	19	1		1	COL25A1	4	109863370	Missense_Mutation	SNP	C	TCGA-OR-A5L9-01A-11D-A29I-10	9726055	109863370	81290906	17	9562										
SRD5A1	6715	hgsc.bcm.edu	37	chr5	6633779	6633779	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0112359550561798	1	1	0.368808049535604	0	0.522478070175439	1	1	0	ggctgcgcggtcttcgcgcgCaatcgtcagacgaactcagt	13	13	3	1	rs248793	byfrequency	TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	.	SRD5A1-90	NM_001047	exon1	c.C90G	p.R30R	CGCGCGCAATCGT	.	6	6	0	0	C|0.454;G|0.546	0	0	0	0	0	G	6633779	C	G	6633779	2	3	47	1	0	0	0	0	0	0	0	1	15175	697	25	3		3	SRD5A1	5	6633779	Silent	SNP	C	TCGA-OR-A5L9-01A-11D-A29I-10		6633779	174281481	18	9563										
GABRG2	2566	hgsc.bcm.edu	37	chr5	161529571	161529571	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0112359550561798	1	1	0.368808049535604	0	0.522478070175439	1	1	0	tttggacagggtctcgttctAttgcccaggctggaatgtgc	13	9	2	0	rs211035	byfrequency	TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	.	GABRG2-95	NM_198903	exon6	c.A643G	p.I215V	CGTTCTATTGCCC	.	6	6	0	0	A|0.193;G|0.807	0	0	0	0	0	G	161529571	A	G	161529571	3	3	47	1	0	0	0	0	1	0	0	0	6191	449	16	4	665	4	GABRG2	5	161529571	Missense_Mutation	SNP	A	TCGA-OR-A5L9-01A-11D-A29I-10	154895792	161529571	19385689	19	9564										
HLA-B	3106	bcgsc.ca	37	chr6	31324516	31324516	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0112359550561798	1	1	0.368808049535604	0	0.522478070175439	1	1	0	gttccgcaggctctctcggtCagtctgtgcctgggccttgt	13	13	3	0	rs1131215	byfrequency	TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	.	HLA-B-90	NM_005514	exon2	c.G292T	p.D98Y	CTCGGTCAGTCTG	.	89	37	147	4	C|0.417;A|0.583	6	6	0	0	0	A	31324516	C	A	31324516	3	1	47	1	0	0	0	0	1	0	0	0	7217	826	29	3	820	3	HLA-B	6	31324516	Missense_Mutation	SNP	C	TCGA-OR-A5L9-01A-11D-A29I-10		31324516	139790551	20	9565										
HLA-B	3106	bcgsc.ca	37	chr6	31324586	31324586	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0112359550561798	1	1	0.368808049535604	0	0.522478070175439	1	1	0	ggcccctcctgctctatccaCggcgcccgcggctcctctct	9	21	2	0	rs151341145	alternate_allele	TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	.	HLA-B-90	NM_005514	exon2	c.G222A	p.P74P	TATCCACGGCGCC	.	89	28	170	3	.	67	67	0	0	0	T	31324586	C	T	31324586	2	4	47	1	0	0	0	0	0	0	0	1	7217	523	19	1		1	HLA-B	6	31324586	Silent	SNP	C	TCGA-OR-A5L9-01A-11D-A29I-10	70	31324586	139790481	21	9566										
VARS	7407	hgsc.bcm.edu	37	chr6	31762843	31762844	+	Missense_Mutation	DNP	GG	GG	CT													0.0112359550561798	1	1	0.368808049535604	0	0.522478070175439	1	1	0	gcaggcggggtgggggaaagGgagtcctgctagtcgggggt					novel		TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10	GG	GG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	.	VARS-93	NM_006295	exon2	c.C151A	p.P51S	GAAAGGGAGTCCT	.	6	0	1	0	G|0.721;T|0.279	0	0	0	0	0	CT	31762844	GG	CT	31762843	3	2	47	1	0	0	0	0	1	0	0	0	17161	1232	43	3	3758	3	VARS	6	31762843	Missense_Mutation	DNP	GG	TCGA-OR-A5L9-01A-11D-A29I-10	438257	31762843	139352224	22	9567										
HLA-DRB1	3123	bcgsc.ca	37	chr6	32557436	32557436	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0112359550561798	1	1	0.368808049535604	0	0.522478070175439	1	1	0	ttacgtcgggtgtccccagaCaaagccagtggggagctcag	14	11	1	1	rs201614260	byfrequency	TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	.	HLA-DRB1-1	NM_002124	exon1	c.G84C	p.L28F	CCCAGACAAAGCC	.	143	18	222	3	C|0.936;G|0.064	0	0	0	0	0	G	32557436	C	G	32557436	3	3	47	1	0	0	0	0	1	0	0	0	7229	477	17	3	740	3	HLA-DRB1	6	32557436	Missense_Mutation	SNP	C	TCGA-OR-A5L9-01A-11D-A29I-10	794593	32557436	138557631	23	9568										
TRERF1	55809	broad.mit.edu	37	chr6	42196330	42196330	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0112359550561798	1	1	0.368808049535604	0	0.522478070175439	1	1	0	ctgcaaaagccgccttctgaGccttttgcctctgttgttcc	8	14	2	1	novel		TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	.	TRERF1-230	NM_033502	exon18	c.C3356A	p.A1119D	TTCTGAGCCTTTT	.	24	3	25	0	.	1	1	0	0	0	T	42196330	G	T	42196330	3	4	47	1	0	0	0	0	1	0	0	0	16513	971	34	3	250	3	TRERF1	6	42196330	Missense_Mutation	SNP	G	TCGA-OR-A5L9-01A-11D-A29I-10	9638894	42196330	128918737	24	9569										
FAM46A	55603	broad.mit.edu	37	chr6	82461728	82461742	+	In_Frame_Del	DEL	CCGCCGAAGTCGCCG	CCGCCGAAGTCGCCG	-													0.0112359550561798	1	1	0.368808049535604	0	0.522478070175439	1	1	0	gcccaccgaagctgccgccaCcgccgaagtcgccgccgccg					novel		TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	.	FAM46A-90	NM_017633	exon2	c.117_131del	p.39_44del	CCGCCACCGCCGA	.	80	10	34	0	.	0	0	0	0	0	-	82461742	CCGCCGAAGTCGCCG	-	82461728	7	5	47	1	0	1	0	1	0	0	0	0	5584	507	18	0	1205	0	FAM46A	6	82461728	In_Frame_Del	DEL	CCGCCGAAGTCGCCG	TCGA-OR-A5L9-01A-11D-A29I-10	40265398	82461728	88653339	25	9570										
SYTL3	94120	broad.mit.edu	37	chr6	159086557	159086557	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0112359550561798	1	1	0.368808049535604	0	0.522478070175439	1	1	0	tgcaccggggcgccgtgtgcCggggctgcagccaccgcgtg	18	15	0	0	rs150257129	byfrequency	TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	.	SYTL3-90	NM_001242384	exon6	c.C241T	p.R81W	GTGTGCCGGGGCT	.	92	4	39	1	C|0.998;T|0.002	0	0	0	0	0	T	159086557	C	T	159086557	3	4	47	1	0	0	0	0	1	0	0	0	15521	643	23	1	247	1	SYTL3	6	159086557	Missense_Mutation	SNP	C	TCGA-OR-A5L9-01A-11D-A29I-10	76624829	159086557	12028510	26	9571										
EGFR	1956	bcgsc.ca	37	chr7	55249063	55249063	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0112359550561798	1	1	0.368808049535604	0	0.522478070175439	1	1	0	tgcctcacctccaccgtgcaGctcatcacgcagctcatgcc	7	19	4	0	rs1050171	byfrequency	TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	.	EGFR-44910	NM_005228	exon20	c.G2361A	p.Q787Q	CGTGCAGCTCATC	.	263	8	250	1	G|0.497;A|0.503	0	0	0	0	0	A	55249063	G	A	55249063	2	1	47	1	0	0	0	0	0	0	0	1	4978	962	34	3		3	EGFR	7	55249063	Silent	SNP	G	TCGA-OR-A5L9-01A-11D-A29I-10		55249063	103889600	27	9572										
GAL3ST4	79690	bcgsc.ca	37	chr7	99758136	99758136	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0112359550561798	1	1	0.368808049535604	0	0.522478070175439	1	1	0	tcaaagacagagtccagccaTgccagaccccactggatgaa	9	13	1	4	rs3800951	byfrequency	TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	.	GAL3ST4-47	NM_024637	exon4	c.A876C	p.A292A	CAGCCATGCCAGA	.	132	6	161	1	T|0.464;G|0.536	0	0	0	0	0	G	99758136	T	G	99758136	2	3	47	1	0	0	0	0	0	0	0	1	6220	1451	51	5		5	GAL3ST4	7	99758136	Silent	SNP	T	TCGA-OR-A5L9-01A-11D-A29I-10	44509073	99758136	59380527	28	9573										
RELN	5649	broad.mit.edu	37	chr7	103206814	103206814	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0112359550561798	1	1	0.368808049535604	0	0.522478070175439	1	1	0	cagtttgagagctgtcattcAttcctataagaacatcatcc	6	10	3	2	novel		TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	.	RELN-574	NM_173054	exon33	c.T4793C	p.M1598T	TCATTCATTCCTA	.	66	3	47	0	.	0	0	0	0	0	G	103206814	A	G	103206814	3	3	47	1	0	0	0	0	1	0	0	0	13255	217	8	4	5721	4	RELN	7	103206814	Missense_Mutation	SNP	A	TCGA-OR-A5L9-01A-11D-A29I-10	3448678	103206814	55931849	29	9574										
SLC37A3	84255	bcgsc.ca	37	chr7	140080087	140080087	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0112359550561798	1	1	0.368808049535604	0	0.522478070175439	1	1	0	ctctgttctgcttacctccaCaggcagctcaactgacgtgt	8	14	3	1	rs62490396	byfrequency	TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	.	SLC37A3-93	NM_207113	exon3	c.G193C	p.V65L	CCTCCACAGGCAG	.	96	5	110	0	C|0.599;G|0.401	0	0	0	0	0	G	140080087	C	G	140080087	3	3	47	1	0	0	0	0	1	0	0	0	14634	478	17	3	1492	3	SLC37A3	7	140080087	Missense_Mutation	SNP	C	TCGA-OR-A5L9-01A-11D-A29I-10	36873273	140080087	19058576	30	9575										
CLDN23	137075	hgsc.bcm.edu	37	chr8	8560536	8560536	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0112359550561798	1	1	0.368808049535604	0	0.522478070175439	1	1	0	gcagcgtcagcaccatccaaGtggagtggcccgagcccgac	13	15	1	0	rs12548737	byfrequency	TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	.	.	NM_194284	exon1	c.G628A	p.V210M	ATCCAAGTGGAGT	.	8	7	0	0	G|0.907;A|0.093	0	0	0	0	0	A	8560536	G	A	8560536	3	1	47	1	0	0	0	0	1	0	0	0	3490	1029	36	3	630	3	CLDN23	8	8560536	Missense_Mutation	SNP	G	TCGA-OR-A5L9-01A-11D-A29I-10		8560536	137803486	31	9576										
WWP1	11059	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr8	87437479	87437479	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0112359550561798	1	1	0.368808049535604	0	0.522478070175439	1	1	0	caaagaaaagatcctcatggTagaacctattatgtggatca	8	7	2	3	novel		TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	.	WWP1-659	NM_007013	exon10	c.T1089G	p.G363G	TCATGGTAGAACC	.	56	19	32	0	.	0	0	0	0	0	G	87437479	T	G	87437479	2	3	47	1	0	0	0	0	0	0	0	1	17453	1625	57	5		5	WWP1	8	87437479	Silent	SNP	T	TCGA-OR-A5L9-01A-11D-A29I-10	78876943	87437479	58926543	32	9577										
MAL2	114569	hgsc.bcm.edu	37	chr8	120220776	120220776	+	Splice_Site	DEL	G	G	-													0.0112359550561798	1	1	0.368808049535604	0	0.522478070175439	1	1	0	cgtgtccttcccgccgccccGgggtcaccctgcccgccggc					novel		TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	.	.	NM_052886	exon1	c.64+1G>-	.	CGCCCCGGGGTCA	.	10	10	0	0	.	0	0	0	0	0	-	120220776	G	-	120220776	8	5	47	1	0	1	0	1	0	0	1	0	9228	1116	39	0	67	0	MAL2	8	120220776	Splice_Site	DEL	G	TCGA-OR-A5L9-01A-11D-A29I-10	32783297	120220776	26143246	33	9578										
PLEC	5339	hgsc.bcm.edu	37	chr8	144990396	144990396	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0112359550561798	1	1	0.368808049535604	0	0.522478070175439	1	1	0	gaggccgaggaccccgaggcGtagcggcggccgtagcccga	18	14	0	0	novel		TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	.	PLEC-141	NM_201380	exon32	c.C14004A	p.Y4668X	CGAGGCGTAGCGG	.	63	4	17	0	.	5	5	0	0	0	T	144990396	G	T	144990396	4	4	47	1	0	0	0	0	0	1	0	0	12081	1140	40	2	54	2	PLEC	8	144990396	Nonsense_Mutation	SNP	G	TCGA-OR-A5L9-01A-11D-A29I-10	24769620	144990396	1373626	34	9579										
PLEC	5339	hgsc.bcm.edu	37	chr8	144998514	144998514	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0112359550561798	1	1	0.368808049535604	0	0.522478070175439	1	1	0	cgccgcaggcgctcgttctcCgcctccttctccttgagcgc	10	19	2	1	rs75586449	byfrequency	TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	.	PLEC-141	NM_201380	exon31	c.G5994A	p.A1998A	GTTCTCCGCCTCC	.	10	5	0	0	C|0.961;T|0.039	1	1	0	0	0	T	144998514	C	T	144998514	2	4	47	1	0	0	0	0	0	0	0	1	12081	639	23	1		1	PLEC	8	144998514	Silent	SNP	C	TCGA-OR-A5L9-01A-11D-A29I-10	8118	144998514	1365508	35	9580										
PLEC	5339	hgsc.bcm.edu	37	chr8	145001588	145001588	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0112359550561798	1	1	0.368808049535604	0	0.522478070175439	1	1	0	ccaagcccacctgctcctgcCgcagctgctcccgcacagcc	8	22	0	0	rs11136334	byfrequency	TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	.	PLEC-141	NM_201380	exon27	c.G4157A	p.R1386Q	TCCTGCCGCAGCT	.	9	4	0	0	C|0.707;T|0.293	0	0	0	0	0	T	145001588	C	T	145001588	3	4	47	1	0	0	0	0	1	0	0	0	12081	652	23	1	9921	1	PLEC	8	145001588	Missense_Mutation	SNP	C	TCGA-OR-A5L9-01A-11D-A29I-10	3074	145001588	1362434	36	9581										
ERMP1	79956	hgsc.bcm.edu	37	chr9	5832728	5832728	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0112359550561798	1	1	0.368808049535604	0	0.522478070175439	1	1	0	aactccccgcggtgtccagcGgccccgcgtagcacgagctg	13	17	0	0	rs1131727	byfrequency	TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	.	ERMP1-69	NM_024896	exon1	c.C300G	p.A100A	TCCAGCGGCCCCG	.	13	13	0	0	G|0.572;C|0.428	0	0	0	0	0	C	5832728	G	C	5832728	2	2	47	1	0	0	0	0	0	0	0	1	5249	1103	39	2		2	ERMP1	9	5832728	Silent	SNP	G	TCGA-OR-A5L9-01A-11D-A29I-10		5832728	135380703	37	9582										
AQP7	364	ucsc.edu	37	chr9	33385287	33385287	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0112359550561798	1	1	0.368808049535604	0	0.522478070175439	1	1	0	ccaccaccagttctccccatTgctgcaggcaagaggcagag	10	15	1	2	rs74557595		TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	.	AQP7-90	NM_001170	exon8	c.A745G	p.N249D	CCCCATTGCTGCA	.	31	8	27	2	.	0	0	0	0	0	C	33385287	T	C	33385287	3	2	47	1	0	0	0	0	1	0	0	0	831	1826	63	4	287	4	AQP7	9	33385287	Missense_Mutation	SNP	T	TCGA-OR-A5L9-01A-11D-A29I-10	27552559	33385287	107828144	38	9583										
CA9	768	hgsc.bcm.edu	37	chr9	35675852	35675852	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0112359550561798	1	1	0.368808049535604	0	0.522478070175439	1	1	0	ctcgccgccttctgcccggcCctgcgccccctggaactcct	9	22	1	0	rs2301370	byfrequency	TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	.	CA9-95	NM_001216	exon3	c.C528G	p.A176A	CCCGGCCCTGCGC	.	27	16	3	0	C|0.941;G|0.059	0	0	0	0	0	G	35675852	C	G	35675852	2	3	47	1	0	0	0	0	0	0	0	1	2530	610	22	3		3	CA9	9	35675852	Silent	SNP	C	TCGA-OR-A5L9-01A-11D-A29I-10	2290565	35675852	105537579	39	9584										
TMEM72	643236	bcgsc.ca	37	chr10	45430462	45430462	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0112359550561798	1	1	0.368808049535604	0	0.522478070175439	1	1	0	cgcatagtcccctccctcgcCgaaggtctggatgatgggga	13	13	1	1	rs17417442	byfrequency	TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	.	TMEM72-90	NM_001123376	exon5	c.C708T	p.A236A	CCTCGCCGAAGGT	.	124	6	124	1	C|0.634;T|0.366	0	0	0	0	0	T	45430462	C	T	45430462	2	4	47	1	0	0	0	0	0	0	0	1	16238	639	23	1		1	TMEM72	10	45430462	Silent	SNP	C	TCGA-OR-A5L9-01A-11D-A29I-10		45430462	90104285	40	9585										
GDF10	2662	hgsc.bcm.edu	37	chr10	48438647	48438649	+	In_Frame_Del	DEL	GCA	GCA	-													0.0112359550561798	1	1	0.368808049535604	0	0.522478070175439	1	1	0	gagcaacagcagaaacaacgGcagcagcagcagcagcagct					rs71522826	alternate_allele	TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10	GCA	GCA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	.	GDF10-650	NM_004962	exon1	c.62_64del	p.21_22del	ACAACGGCAGCAG	.	34	28	2	1	-|0.500;CAG|0.500	0	0	0	0	0	-	48438649	GCA	-	48438647	7	5	47	1	0	1	0	1	0	0	0	0	6331	1203	42	0	1384	0	GDF10	10	48438647	In_Frame_Del	DEL	GCA	TCGA-OR-A5L9-01A-11D-A29I-10	3008185	48438647	87096100	41	9586										
TET1	80312	broad.mit.edu	37	chr10	70451264	70451264	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0112359550561798	1	1	0.368808049535604	0	0.522478070175439	1	1	0	cgctaccactcctgttgagcAccccaaccgtaatcatccaa	5	17	1	1	novel		TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	.	TET1-663	NM_030625	exon12	c.A6104C	p.H2035P	TTGAGCACCCCAA	.	55	13	62	9	.	0	0	0	0	0	C	70451264	A	C	70451264	3	2	47	1	0	0	0	0	1	0	0	0	15806	159	6	5	6146	5	TET1	10	70451264	Missense_Mutation	SNP	A	TCGA-OR-A5L9-01A-11D-A29I-10	22012617	70451264	65083483	42	9587										
PI4K2A	55361	bcgsc.ca	37	chr10	99410790	99410790	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0112359550561798	1	1	0.368808049535604	0	0.522478070175439	1	1	0	ctgcagaagctgtgctgtccTtgctgctttggccgtgactg	13	11	0	2	rs7915721	byfrequency	TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	.	PI4K2A-226	NM_018425	exon2	c.T528C	p.P176P	CTGTCCTTGCTGC	.	145	5	169	1	T|0.663;C|0.337	0	0	0	0	0	C	99410790	T	C	99410790	2	2	47	1	0	0	0	0	0	0	0	1	11900	1596	56	4		4	PI4K2A	10	99410790	Silent	SNP	T	TCGA-OR-A5L9-01A-11D-A29I-10	28959526	99410790	36123957	43	9588										
IRF7	3665	hgsc.bcm.edu	37	chr11	615103	615103	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0112359550561798	1	1	0.368808049535604	0	0.522478070175439	1	1	0	gctggggtccccaccttgaaGatgcgcgcgtcggcctcgct	14	15	0	2	rs113083699		TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	.	IRF7-90	NM_004031	exon1	c.C216T	p.I72I	CTTGAAGATGCGC	.	10	9	0	0	G|0.949;A|0.051	1	1	0	0	0	A	615103	G	A	615103	2	1	47	1	0	0	0	0	0	0	0	1	7856	932	33	3		3	IRF7	11	615103	Silent	SNP	G	TCGA-OR-A5L9-01A-11D-A29I-10		615103	134391413	44	9589										
MUC2	4583	broad.mit.edu	37	chr11	1093314	1093314	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0112359550561798	1	1	0.368808049535604	0	0.522478070175439	1	1	0	actacggtgaccccaaccccAacacccaccggcacacagac	6	20	0	2	novel		TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	.	MUC2-90	NM_002457	exon30	c.A5133T	p.P1711P	AACCCCAACACCC	.	208	8	111	1	.	0	0	0	0	0	T	1093314	A	T	1093314	2	4	47	1	0	0	0	0	0	0	0	1	10003	117	5	5		5	MUC2	11	1093314	Silent	SNP	A	TCGA-OR-A5L9-01A-11D-A29I-10	478211	1093314	133913202	45	9590										
ART5	116969	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr11	3661315	3661315	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0112359550561798	1	1	0.368808049535604	0	0.522478070175439	1	1	0	cccgggagcctccgcccgtcCgcacggcctgattcaactcc	10	20	1	1	novel		TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	.	ART5-91	NM_053017	exon2	c.G344A	p.R115Q	CCCGTCCGCACGG	.	141	8	143	0	.	0	0	0	0	0	T	3661315	C	T	3661315	3	4	47	1	0	0	0	0	1	0	0	0	1001	652	23	1	543	1	ART5	11	3661315	Missense_Mutation	SNP	C	TCGA-OR-A5L9-01A-11D-A29I-10	2568001	3661315	131345201	46	9591										
NLRP14	338323	broad.mit.edu	37	chr11	7064833	7064833	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0112359550561798	1	1	0.368808049535604	0	0.522478070175439	1	1	0	gttataaagacccccatttgAcacagatgaagtgctttttg	8	8	0	4	novel		TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	.	NLRP14-295	NM_176822	exon4	c.A1576C	p.T526P	CATTTGACACAGA	.	71	4	55	0	.	0	0	0	0	0	C	7064833	A	C	7064833	3	2	47	1	0	0	0	0	1	0	0	0	10505	275	10	5	1586	5	NLRP14	11	7064833	Missense_Mutation	SNP	A	TCGA-OR-A5L9-01A-11D-A29I-10	3403518	7064833	127941683	47	9592										
CST6	1474	hgsc.bcm.edu	37	chr11	65779590	65779590	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0112359550561798	1	1	0.368808049535604	0	0.522478070175439	1	1	0	ctcctggcgctgccacgcgaCgcccgggcccggccgcagga	15	19	0	0	rs1131544		TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	.	CST6-523	NM_001323	exon1	c.C75T	p.D25D	ACGCGACGCCCGG	.	5	5	0	0	C|0.921;T|0.079	0	0	0	0	0	T	65779590	C	T	65779590	2	4	47	1	0	0	0	0	0	0	0	1	3982	535	19	1		1	CST6	11	65779590	Silent	SNP	C	TCGA-OR-A5L9-01A-11D-A29I-10	58714757	65779590	69226926	48	9593										
USP2	9099	hgsc.bcm.edu	37	chr11	119234664	119234664	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0112359550561798	1	1	0.368808049535604	0	0.522478070175439	1	1	0	agggcgggaaagggggcggcGggggggtcctcgggcagggt	26	7	0	0	rs201288742		TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	.	USP2-661	NM_171997	exon1	c.C42G	p.P14P	GGCGGCGGGGGGG	.	21	19	3	0	G|0.991;C|0.009	0	0	0	0	0	C	119234664	G	C	119234664	2	2	47	1	0	0	0	0	0	0	0	1	17089	1103	39	2		2	USP2	11	119234664	Silent	SNP	G	TCGA-OR-A5L9-01A-11D-A29I-10	53455074	119234664	15771852	49	9594										
VWF	7450	broad.mit.edu	37	chr12	6132943	6132944	+	Frame_Shift_Ins	INS	-	-	C													0.0112359550561798	1	1	0.368808049535604	0	0.522478070175439	1	1	0	gcagacatccagatatggctINScggggtccacctgcaaaggc					novel		TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	.	VWF-163	NM_000552	exon25	c.3233_3234insG	p.E1078fs	TATGGCTCGGGGT	.	616	9	364	0	.	0	0	0	0	0	C	6132944	-	C	6132943	7	5	47	1	0	1	1	0	0	0	0	0	17284	1551	54	0	5320	0	VWF	12	6132943	Frame_Shift_Ins	INS	-	TCGA-OR-A5L9-01A-11D-A29I-10		6132943	127718952	50	9595										
ATXN2	6311	hgsc.bcm.edu	37	chr12	112036797	112036797	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0112359550561798	1	1	0.368808049535604	0	0.522478070175439	1	1	0	tgctgttgctgctgctgctgCtgctgctgctgctgctgctg	14	12	0	0	rs4098854		TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	.	ATXN2-136	NM_002973	exon1	c.G522A	p.Q174Q	CTGCTGCTGCTGC	.	10	10	0	0	C|0.429;T|0.571	4	4	0	0	0	T	112036797	C	T	112036797	2	4	47	1	0	0	0	0	0	0	0	1	1212	796	28	3		3	ATXN2	12	112036797	Silent	SNP	C	TCGA-OR-A5L9-01A-11D-A29I-10	105903854	112036797	21815098	51	9596										
RNFT2	84900	hgsc.bcm.edu	37	chr12	117187907	117187907	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0112359550561798	1	1	0.368808049535604	0	0.522478070175439	1	1	0	caccgccagccccaccaccaTttccaccatggcggccaccg	7	22	0	0	rs111256849	byfrequency	TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	.	.	NM_001109903	exon4	c.T345C	p.H115H	CCACCATTTCCAC	.	10	5	2	0	T|0.767;C|0.233	0	0	0	0	0	C	117187907	T	C	117187907	2	2	47	1	0	0	0	0	0	0	0	1	13537	1490	52	4		4	RNFT2	12	117187907	Silent	SNP	T	TCGA-OR-A5L9-01A-11D-A29I-10	5151110	117187907	16663988	52	9597										
SRRM4	84530	hgsc.bcm.edu	37	chr12	119594447	119594447	+	Missense_Mutation	SNP	A	A	C													0.0112359550561798	1	1	0.368808049535604	0	0.522478070175439	1	1	0	agtcggagccggagccggagAcggagccggacccgcacgag					novel		TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	.	SRRM4-2	NM_194286	exon13	c.A1680C	p.R560S	CCGGAGACGGAGC	.	74	17	8	0	.	0	0	0	0	0	C	119594447	A	C	119594447	3	2	47	1	0	0	0	0	1	0	0	0	15208	272	10	5	1730	5	SRRM4	12	119594447	Missense_Mutation	SNP	A	TCGA-OR-A5L9-01A-11D-A29I-10	2406540	119594447	14257448	53	9598	116	2								
SRRM4	84530	hgsc.bcm.edu	37	chr12	119594453	119594453	+	Missense_Mutation	SNP	C	C	A													0.0112359550561798	1	1	0.368808049535604	0	0.522478070175439	1	1	0	agccggagccggagacggagCcggacccgcacgagcagcag					novel		TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	.	SRRM4-2	NM_194286	exon13	c.C1686A	p.S562R	ACGGAGCCGGACC	.	59	10	6	0	.	0	0	0	0	0	A	119594453	C	A	119594453	3	1	47	1	0	0	0	0	1	0	0	0	15208	738	26	3	1736	3	SRRM4	12	119594453	Missense_Mutation	SNP	C	TCGA-OR-A5L9-01A-11D-A29I-10	6	119594453	14257442	54	9599	116	2								
HNRNPA1L2	144983	hgsc.bcm.edu	37	chr13	53217493	53217493	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0112359550561798	1	1	0.368808049535604	0	0.522478070175439	1	1	0	aggcagaagctctggcccctAtggcggtggaggccaatact	14	11	1	1	rs78872760	byfrequency	TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	.	HNRNPA1L2-90	NM_001011724	exon7	c.A866G	p.Y289C	GCCCCTATGGCGG	.	4	4	0	0	A|0.826;G|0.174	132	129	3	0	0	G	53217493	A	G	53217493	3	3	47	1	0	0	0	0	1	0	0	0	7279	449	16	4	868	4	HNRNPA1L2	13	53217493	Missense_Mutation	SNP	A	TCGA-OR-A5L9-01A-11D-A29I-10		53217493	61952385	55	9600										
ARHGEF7	8874	bcgsc.ca	37	chr13	111870037	111870037	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0112359550561798	1	1	0.368808049535604	0	0.522478070175439	1	1	0	cccttttaggacatgaccgaTaatagcaacaatcaactggt	7	10	1	1	rs2296354	byfrequency	TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	.	ARHGEF7-232	NM_001113511	exon6	c.T543C	p.D181D	GACCGATAATAGC	.	204	8	215	0	T|0.807;C|0.193	0	0	0	0	0	C	111870037	T	C	111870037	2	2	47	1	0	0	0	0	0	0	0	1	911	1403	49	4		4	ARHGEF7	13	111870037	Silent	SNP	T	TCGA-OR-A5L9-01A-11D-A29I-10	58652544	111870037	3299841	56	9601										
NDRG2	57447	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr14	21488972	21488972	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0112359550561798	1	1	0.368808049535604	0	0.522478070175439	1	1	0	cgccaggatgtaggctccagCtccaacaccaactccaatta	7	15	0	0	novel		TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	.	NDRG2-154	NM_201537	exon7	c.G439C	p.A147P	CTCCAGCTCCAAC	.	34	22	36	0	.	2	0	2	0	0	G	21488972	C	G	21488972	3	3	47	1	0	0	0	0	1	0	0	0	10281	797	28	3	716	3	NDRG2	14	21488972	Missense_Mutation	SNP	C	TCGA-OR-A5L9-01A-11D-A29I-10		21488972	85860568	57	9602										
SAMD4A	23034	hgsc.bcm.edu	37	chr14	55227152	55227152	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0112359550561798	1	1	0.368808049535604	0	0.522478070175439	1	1	0	gcagctgcgatggggagctgGccgtcgcccccctgccagag	16	15	0	1	rs149416017		TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	.	SAMD4A-90	NM_015589	exon6	c.G1450T	p.A484S	GAGCTGGCCGTCG	.	4	4	1	0	G|0.987;T|0.013	0	0	0	0	0	T	55227152	G	T	55227152	3	4	47	1	0	0	0	0	1	0	0	0	13856	1203	42	3	1469	3	SAMD4A	14	55227152	Missense_Mutation	SNP	G	TCGA-OR-A5L9-01A-11D-A29I-10	33738180	55227152	52122388	58	9603										
KBTBD13	390594	hgsc.bcm.edu	37	chr15	65369395	65369395	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0112359550561798	1	1	0.368808049535604	0	0.522478070175439	1	1	0	ggaggacgagctgctgcaggCcgtggagtgcgccgccttcc	17	13	0	0	rs2919358	byfrequency	TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	.	.	NM_001101362	exon1	c.C242T	p.A81V	TGCAGGCCGTGGA	.	11	9	1	0	C|0.452;T|0.548	0	0	0	0	0	T	65369395	C	T	65369395	3	4	47	1	0	0	0	0	1	0	0	0	8013	739	26	3	244	3	KBTBD13	15	65369395	Missense_Mutation	SNP	C	TCGA-OR-A5L9-01A-11D-A29I-10		65369395	37161997	59	9604										
PLIN1	5346	hgsc.bcm.edu	37	chr15	90209135	90209135	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0112359550561798	1	1	0.368808049535604	0	0.522478070175439	1	1	0	ggtgggttgtcgatgtcccgGaattcgctctcgggctccat	14	11	1	0	rs8179074	byfrequency	TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	.	PLIN1-91	NM_001145311	exon9	c.C1248T	p.F416F	GTCCCGGAATTCG	.	9	9	0	0	G|0.976;A|0.024	0	0	0	0	0	A	90209135	G	A	90209135	2	1	47	1	0	0	0	0	0	0	0	1	12118	1165	41	3		3	PLIN1	15	90209135	Silent	SNP	G	TCGA-OR-A5L9-01A-11D-A29I-10	24839740	90209135	12322257	60	9605										
MEFV	4210	hgsc.bcm.edu	37	chr16	3304573	3304573	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0112359550561798	1	1	0.368808049535604	0	0.522478070175439	1	1	0	tgcgcgtccaggccctccgaGgccttctctctgcgtttgct	11	16	2	0	rs224223	byfrequency	TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	.	MEFV-228	NM_000243	exon2	c.C495A	p.A165A	CTCCGAGGCCTTC	.	10	10	0	0	G|0.570;T|0.430	0	0	0	0	0	T	3304573	G	T	3304573	2	4	47	1	0	0	0	0	0	0	0	1	9487	987	35	3		3	MEFV	16	3304573	Silent	SNP	G	TCGA-OR-A5L9-01A-11D-A29I-10		3304573	87050180	61	9606										
ANKS3	124401	hgsc.bcm.edu	37	chr16	4748461	4748461	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0112359550561798	1	1	0.368808049535604	0	0.522478070175439	1	1	0	ggacgagggcagcatcccggGccagggcccacgtctcccgc	15	17	1	0	novel		TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	.	ANKS3-90	NM_133450	exon14	c.C1691G	p.A564G	TCCCGGGCCAGGG	.	21	5	3	0	.	1	1	0	0	0	C	4748461	G	C	4748461	3	2	47	1	0	0	0	0	1	0	0	0	690	1203	42	3	295	3	ANKS3	16	4748461	Missense_Mutation	SNP	G	TCGA-OR-A5L9-01A-11D-A29I-10	1443888	4748461	85606292	62	9607										
CCDC102A	92922	hgsc.bcm.edu	37	chr16	57562804	57562804	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0112359550561798	1	1	0.368808049535604	0	0.522478070175439	1	1	0	ggcagtgcagtccgaccaccGgcgcatggtcttctccatct	11	15	3	0	rs12935069		TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	.	CCDC102A-91	NM_033212	exon2	c.C286T	p.R96W	ACCACCGGCGCAT	.	12	12	0	0	G|0.001;A|0.999	0	0	0	0	0	A	57562804	G	A	57562804	3	1	47	1	0	0	0	0	1	0	0	0	2742	1115	39	1	1398	1	CCDC102A	16	57562804	Missense_Mutation	SNP	G	TCGA-OR-A5L9-01A-11D-A29I-10	52814343	57562804	32791949	63	9608										
SPNS3	201305	bcgsc.ca	37	chr17	4391132	4391132	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0112359550561798	1	1	0.368808049535604	0	0.522478070175439	1	1	0	agcaatgatgtggacagcaaCgacctggagagacaaggcct	13	9	0	2	rs2291743	byfrequency	TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	.	SPNS3-153	NM_182538	exon12	c.C1482T	p.N494N	CAGCAACGACCTG	.	244	8	266	2	C|0.793;T|0.207	2	2	0	0	0	T	4391132	C	T	4391132	2	4	47	1	0	0	0	0	0	0	0	1	15113	535	19	1		1	SPNS3	17	4391132	Silent	SNP	C	TCGA-OR-A5L9-01A-11D-A29I-10		4391132	76804078	64	9609			1	47		2	2	22	N	C_A	6.037277e-05
SPNS3	201305	bcgsc.ca	37	chr17	4391153	4391153	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0112359550561798	1	1	0.368808049535604	0	0.522478070175439	1	1	0	gacctggagagacaaggcctActttcgggcgctggcgcctc	14	13	0	1	rs333122	byfrequency	TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	.	SPNS3-153	NM_182538	exon12	c.A1503G	p.L501L	AGGCCTACTTTCG	.	228	8	262	4	A|0.784;G|0.216	3	3	0	0	0	G	4391153	A	G	4391153	2	3	47	1	0	0	0	0	0	0	0	1	15113	378	14	4		4	SPNS3	17	4391153	Silent	SNP	A	TCGA-OR-A5L9-01A-11D-A29I-10	21	4391153	76804057	65	9610			1	47		2	2	22	N	C_A	6.037277e-05
RNF135	84282	hgsc.bcm.edu	37	chr17	29298390	29298390	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0112359550561798	1	1	0.368808049535604	0	0.522478070175439	1	1	0	ggcgggctccgaccctgcccActgcccctgcccgggctcca	12	21	0	0	novel		TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	.	RNF135-227	NM_197939	exon1	c.A299G	p.H100R	CTGCCCACTGCCC	.	9	5	2	0	.	0	0	0	0	0	G	29298390	A	G	29298390	3	3	47	1	0	0	0	0	1	0	0	0	13475	159	6	4	301	4	RNF135	17	29298390	Missense_Mutation	SNP	A	TCGA-OR-A5L9-01A-11D-A29I-10	24907237	29298390	51896820	66	9611										
KRTAP4-5	85289	broad.mit.edu	37	chr17	39305775	39305776	+	In_Frame_Ins	INS	-	-	GGCAGCAGCTGGGGC													0.0112359550561798	1	1	0.368808049535604	0	0.522478070175439	1	1	0	ggtcctgcagcaggtggtctINSggcagcagcaggggcggcag					novel		TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	.	KRTAP4-5-90	NM_033188	exon1	c.245_246insGCCCCAGCTGCTGCC	p.Q82delinsRPSCCQ	GTGGTCTGGCAGC	.	97	51	29	0	.	0	0	0	0	0	GGCAGCAGCTGGGGC	39305776	-	GGCAGCAGCTGGGGC	39305775	7	5	47	1	0	1	1	0	0	0	0	0	8576	1580	55	0	304	0	KRTAP4-5	17	39305775	In_Frame_Ins	INS	-	TCGA-OR-A5L9-01A-11D-A29I-10	10007385	39305775	41889435	67	9612										
TTLL6	284076	hgsc.bcm.edu	37	chr17	46846505	46846505	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0112359550561798	1	1	0.368808049535604	0	0.522478070175439	1	1	0	tcaccagcaggtccctcagaGtaacattatagctctgagga	9	11	3	2	novel		TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	.	TTLL6-90	NM_001130918	exon15	c.C2522A	p.T841N	CTCAGAGTAACAT	.	78	4	108	0	.	0	0	0	0	0	T	46846505	G	T	46846505	3	4	47	1	0	0	0	0	1	0	0	0	16769	1029	36	3	157	3	TTLL6	17	46846505	Missense_Mutation	SNP	G	TCGA-OR-A5L9-01A-11D-A29I-10	7540730	46846505	34348705	68	9613										
FADS6	283985	hgsc.bcm.edu	37	chr17	72889676	72889677	+	In_Frame_Ins	INS	-	-	GGCTCCGTAGGTTCCATC													0.0112359550561798	1	1	0.368808049535604	0	0.522478070175439	1	1	0	tgggctccgtaggttccatgINSggctccgtgggttccatgga					novel		TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	.	FADS6-22	NM_178128	exon1	c.18_19insGATGGAACCTACGGAGCC	p.P6delinsPMEPTEP	TTCCATGGGCTCC	.	114	0	37	0	.	0	0	0	0	0	GGCTCCGTAGGTTCCATC	72889677	-	GGCTCCGTAGGTTCCATC	72889676	7	5	47	1	0	1	1	0	0	0	0	0	5384	1335	47	0	1058	0	FADS6	17	72889676	In_Frame_Ins	INS	-	TCGA-OR-A5L9-01A-11D-A29I-10	26043171	72889676	8305534	69	9614										
EVPL	2125	bcgsc.ca	37	chr17	74014668	74014668	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0112359550561798	1	1	0.368808049535604	0	0.522478070175439	1	1	0	ccagcttataccgctcacccTgcagcagctgcacctggggg	11	16	1	0	rs2071192	byfrequency	TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	.	EVPL-93	NM_001988	exon12	c.A1298G	p.Q433R	TCACCCTGCAGCA	.	230	8	190	2	T|0.239;G|0.223	0	0	0	0	0	C	74014668	T	C	74014668	3	2	47	1	0	0	0	0	1	0	0	0	5305	1580	55	4	4847	4	EVPL	17	74014668	Missense_Mutation	SNP	T	TCGA-OR-A5L9-01A-11D-A29I-10	1124992	74014668	7180542	70	9615										
UTS2R	2837	broad.mit.edu	37	chr17	80333066	80333066	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0112359550561798	1	1	0.368808049535604	0	0.522478070175439	1	1	0	gtaccaccaggccccgctggCgccgcggacggcgcgcatcg	15	18	0	0	novel		TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	.	UTS2R-153	NM_018949	exon1	c.C866A	p.A289E	CGCTGGCGCCGCG	.	114	7	32	1	.	0	0	0	0	0	A	80333066	C	A	80333066	3	1	47	1	0	0	0	0	1	0	0	0	17144	768	27	2	868	2	UTS2R	17	80333066	Missense_Mutation	SNP	C	TCGA-OR-A5L9-01A-11D-A29I-10	6318398	80333066	862144	71	9616										
ZFR2	23217	hgsc.bcm.edu	37	chr19	3831404	3831404	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.0112359550561798	1	1	0.368808049535604	0	0.522478070175439	1	1	0	tgctgggaagcggtggcttcGagtcggccctggggctgctt	18	10	0	0	novel		TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	.	ZFR2-70	NM_015174	exon5	c.C749G	p.S250W	GGCTTCGAGTCGG	.	19	10	2	0	.	0	0	0	0	0	C	3831404	G	C	3831404	3	2	47	1	0	0	0	0	1	0	0	0	17697	1059	37	2	2130	2	ZFR2	19	3831404	Missense_Mutation	SNP	G	TCGA-OR-A5L9-01A-11D-A29I-10		3831404	55297579	72	9617										
PLIN5	440503	hgsc.bcm.edu	37	chr19	4524016	4524016	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0112359550561798	1	1	0.368808049535604	0	0.522478070175439	1	1	0	ggcgccggcgggcaggccccGcacgctggactccagagcct	16	17	0	1	rs1062223	byfrequency	TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	.	PLIN5-22	NM_001013706	exon8	c.C916T	p.R306W	GGCCCCGCACGCT	.	8	6	0	0	G|0.892;A|0.108	0	0	0	0	0	A	4524016	G	A	4524016	3	1	47	1	0	0	0	0	1	0	0	0	12122	1086	38	1	479	1	PLIN5	19	4524016	Missense_Mutation	SNP	G	TCGA-OR-A5L9-01A-11D-A29I-10	692612	4524016	54604967	73	9618										
ZNF266	10781	bcgsc.ca	37	chr19	9524185	9524185	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0112359550561798	1	1	0.368808049535604	0	0.522478070175439	1	1	0	acacacgtgggaaacttaaaAgctttgccacattccataca	6	11	0	0	rs2241356	byfrequency	TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	.	ZNF266-91	NM_001271314	exon11	c.T1416C	p.A472A	CTTAAAAGCTTTG	.	176	6	161	1	A|0.383;G|0.617	1	1	0	0	0	G	9524185	A	G	9524185	2	3	47	1	0	0	0	0	0	0	0	1	17842	59	3	4		4	ZNF266	19	9524185	Silent	SNP	A	TCGA-OR-A5L9-01A-11D-A29I-10	5000169	9524185	49604798	74	9619										
NWD1	284434	broad.mit.edu	37	chr19	16859997	16859997	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0112359550561798	1	1	0.368808049535604	0	0.522478070175439	1	1	0	tgctgagctcagaggaccggGaacagggagccaccgtcttc	14	12	2	2	novel		TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	.	NWD1-7	NM_001007525	exon6	c.G544A	p.E182K	GACCGGGAACAGG	.	204	6	182	0	.	0	0	0	0	0	A	16859997	G	A	16859997	3	1	47	1	0	0	0	0	1	0	0	0	10810	1175	41	3	145	3	NWD1	19	16859997	Missense_Mutation	SNP	G	TCGA-OR-A5L9-01A-11D-A29I-10	7335812	16859997	42268986	75	9620										
ZNF676	163223	hgsc.bcm.edu	37	chr19	22363460	22363460	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0112359550561798	1	1	0.368808049535604	0	0.522478070175439	1	1	0	gtatgaataatcttatgtttAgtaaggattgaggatcgatt	10	2	1	2	rs78757874		TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	.	ZNF676-90	NM_001001411	exon3	c.T1059C	p.T353T	ATGTTTAGTAAGG	.	40	5	20	0	.	0	0	0	0	0	G	22363460	A	G	22363460	2	3	47	1	0	0	0	0	0	0	0	1	18120	407	15	4		4	ZNF676	19	22363460	Silent	SNP	A	TCGA-OR-A5L9-01A-11D-A29I-10	5503463	22363460	36765523	76	9621										
PTGIR	5739	hgsc.bcm.edu	37	chr19	47127439	47127439	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0112359550561798	1	1	0.368808049535604	0	0.522478070175439	1	1	0	gggtgctggtggccggccccAccgagccccgcacgtaggtg	17	15	0	0	rs200213497		TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	.	PTGIR-522	NM_000960	exon2	c.T44C	p.V15A	GGCCCCACCGAGC	.	6	5	0	0	.	0	0	0	0	0	G	47127439	A	G	47127439	3	3	47	1	0	0	0	0	1	0	0	0	12784	159	6	4	1124	4	PTGIR	19	47127439	Missense_Mutation	SNP	A	TCGA-OR-A5L9-01A-11D-A29I-10	24763979	47127439	12001544	77	9622										
PPP1R15A	23645	bcgsc.ca	37	chr19	49377873	49377873	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0112359550561798	1	1	0.368808049535604	0	0.522478070175439	1	1	0	gatgattcagaagcagccttGggagaagctgagtcagaccc	13	9	2	5	rs35023389	byfrequency	TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	.	PPP1R15A-226	NM_014330	exon2	c.G1383A	p.L461L	AGCCTTGGGAGAA	.	189	8	222	2	G|0.861;A|0.139	11	11	0	0	0	A	49377873	G	A	49377873	2	1	47	1	0	0	0	0	0	0	0	1	12395	1339	47	3		3	PPP1R15A	19	49377873	Silent	SNP	G	TCGA-OR-A5L9-01A-11D-A29I-10	2250434	49377873	9751110	78	9623										
GYS1	2997	bcgsc.ca	37	chr19	49485548	49485548	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0112359550561798	1	1	0.368808049535604	0	0.522478070175439	1	1	0	agccgagccaatgcctccagGaagacgtcagcacccttgtt	10	14	1	1	rs5464	bycluster;byfrequency;by1000genomes	TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	.	GYS1-524	NM_002103	exon7	c.C1026T	p.F342F	CTCCAGGAAGACG	.	182	7	230	0	G|0.713;A|0.287	0	0	0	0	0	A	49485548	G	A	49485548	2	1	47	1	0	0	0	0	0	0	0	1	6933	1165	41	3		3	GYS1	19	49485548	Silent	SNP	G	TCGA-OR-A5L9-01A-11D-A29I-10	107675	49485548	9643435	79	9624										
ZNF83	55769	bcgsc.ca	37	chr19	53116856	53116856	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0112359550561798	1	1	0.368808049535604	0	0.522478070175439	1	1	0	gactgaagaccttgccacacTcattacatttgtaaggtttc	7	10	1	2	rs199873537		TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	.	ZNF83-91	NM_018300	exon3	c.A962T	p.E321V	CCACACTCATTAC	.	185	10	121	2	.	6	5	1	0	0	A	53116856	T	A	53116856	3	1	47	1	0	0	0	0	1	0	0	0	18220	1551	54	5	592	5	ZNF83	19	53116856	Missense_Mutation	SNP	T	TCGA-OR-A5L9-01A-11D-A29I-10	3631308	53116856	6012127	80	9625										
ZBTB45	84878	hgsc.bcm.edu	37	chr19	59028585	59028585	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0112359550561798	1	1	0.368808049535604	0	0.522478070175439	1	1	0	gcagccagcaggtggcgcagGcggtgacgcagctgcgcagg	19	12	0	1	rs11545185	byfrequency	TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	.	ZBTB45-90	NM_032792	exon2	c.C456T	p.R152R	GCGCAGGCGGTGA	.	4	4	0	0	G|0.844;A|0.156	0	0	0	0	0	A	59028585	G	A	59028585	2	1	47	1	0	0	0	0	0	0	0	1	17583	1190	42	3		3	ZBTB45	19	59028585	Silent	SNP	G	TCGA-OR-A5L9-01A-11D-A29I-10	5911729	59028585	100398	81	9626										
DSTN	11034	broad.mit.edu	37	chr20	17581488	17581489	+	Frame_Shift_Ins	INS	-	-	T													0.0112359550561798	1	1	0.368808049535604	0	0.522478070175439	1	1	0	gaaaagaaagaaggctgtcaINSttttttgtctcagtgcagac					novel		TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	.	DSTN-154	NM_006870	exon2	c.109_110insT	p.I37fs	GCTGTCATTTTTT	.	203	22	120	3	.	0	0	0	0	0	T	17581489	-	T	17581488	7	5	47	1	0	1	1	0	0	0	0	0	4795	217	8	0	115	0	DSTN	20	17581488	Frame_Shift_Ins	INS	-	TCGA-OR-A5L9-01A-11D-A29I-10		17581488	45444032	82	9627										
WISP2	8839	hgsc.bcm.edu	37	chr20	43348735	43348735	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0112359550561798	1	1	0.368808049535604	0	0.522478070175439	1	1	0	cccggggcaggacccggtggCcggggggccctgtgcctctg	19	15	1	0	rs2296530	byfrequency	TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	.	WISP2-130	NM_003881	exon2	c.C258A	p.G86G	CGGTGGCCGGGGG	.	9	9	0	0	C|0.615;A|0.385	1	0	1	0	0	A	43348735	C	A	43348735	2	1	47	1	0	0	0	0	0	0	0	1	17411	726	26	3		3	WISP2	20	43348735	Silent	SNP	C	TCGA-OR-A5L9-01A-11D-A29I-10	25767247	43348735	19676785	83	9628										
MN1	4330	broad.mit.edu	37	chr22	28194934	28194936	+	In_Frame_Del	DEL	TGC	TGC	-													0.0112359550561798	1	1	0.368808049535604	0	0.522478070175439	1	1	0	gctgctgctgctgctgctgtTgctgctgctgctgctgctgc					rs34890218		TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	.	MN1-993	NM_002430	exon1	c.1596_1598del	p.532_533del	TGCTGTTGCTGCT	.	100	7	10	0	.	0	0	0	0	0	-	28194936	TGC	-	28194934	7	5	47	1	0	1	0	1	0	0	0	0	9701	1812	63	0	2372	0	MN1	22	28194934	In_Frame_Del	DEL	TGC	TCGA-OR-A5L9-01A-11D-A29I-10		28194934	23109632	84	9629										
TRIOBP	11078	hgsc.bcm.edu	37	chr22	38122462	38122462	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0112359550561798	1	1	0.368808049535604	0	0.522478070175439	1	1	0	cagcagcgggggccgcacccAcagccctggccgtgcagagg	16	16	0	1	rs739138	byfrequency	TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	.	TRIOBP-136	NM_001039141	exon7	c.A3899G	p.H1300R	GCACCCACAGCCC	.	4	4	0	0	A|0.354;G|0.646	0	0	0	0	0	G	38122462	A	G	38122462	3	3	47	1	0	0	0	0	1	0	0	0	16591	159	6	4	3917	4	TRIOBP	22	38122462	Missense_Mutation	SNP	A	TCGA-OR-A5L9-01A-11D-A29I-10	9927528	38122462	13182104	85	9630										
SRPX	8406	broad.mit.edu	37	chrX	38079976	38079978	+	In_Frame_Del	DEL	GCA	GCA	-													0.0112359550561798	1	1	0.368808049535604	0	0.522478070175439	1	1	0	gctgcggctgggcgggacgcGcagcagcagcagcagcagca					rs35523939	alternate_allele	TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	.	SRPX-130	NM_001170751	exon1	c.68_70del	p.23_24del	GGACGCGCAGCAG	.	43	0	5	0	-|1.000;|0.000	0	0	0	0	0	-	38079978	GCA	-	38079976	7	5	47	1	0	1	0	1	0	0	0	0	15201	1087	38	0	1364	0	SRPX	23	38079976	In_Frame_Del	DEL	GCA	TCGA-OR-A5L9-01A-11D-A29I-10		38079976	117190584	86	9631										
HDAC6	10013	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	48676475	48676475	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0112359550561798	1	1	0.368808049535604	0	0.522478070175439	1	1	0	attgtggattgggatgtccaCcacggtaatggaactcagca	12	8	1	0	novel		TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	.	HDAC6-230	NM_006044	exon21	c.C1953A	p.H651Q	TGTCCACCACGGT	.	492	204	321	0	.	1	1	0	0	0	A	48676475	C	A	48676475	3	1	47	1	0	0	0	0	1	0	0	0	7032	506	18	3	2031	3	HDAC6	23	48676475	Missense_Mutation	SNP	C	TCGA-OR-A5L9-01A-11D-A29I-10	10596499	48676475	106594085	87	9632										
FAM155B	27112	broad.mit.edu	37	chrX	68725179	68725181	+	In_Frame_Del	DEL	CTG	CTG	-													0.0112359550561798	1	1	0.368808049535604	0	0.522478070175439	1	1	0	gacgccgccgcgctgactatCtgctgctgctgctgctgctg					novel		TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	.	FAM155B-131	NM_015686	exon1	c.54_56del	p.18_19del	GACTATCTGCTGC	.	84	8	10	0	.	0	0	0	0	0	-	68725181	CTG	-	68725179	7	5	47	1	0	1	0	1	0	0	0	0	5482	903	32	0	56	0	FAM155B	23	68725179	In_Frame_Del	DEL	CTG	TCGA-OR-A5L9-01A-11D-A29I-10	20048704	68725179	86545381	88	9633										
ZMYM3	9203	ucsc.edu;bcgsc.ca	37	chrX	70467669	70467669	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0112359550561798	1	1	0.368808049535604	0	0.522478070175439	1	1	0	ccagttgctcggtgactccgCgctggcaggtctgggagcag	16	12	1	1	novel		TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	.	ZMYM3-131	NM_005096	exon12	c.G2063A	p.R688H	ACTCCGCGCTGGC	.	441	181	321	2	.	0	0	0	0	0	T	70467669	C	T	70467669	3	4	47	1	0	0	0	0	1	0	0	0	17738	768	27	1	2105	1	ZMYM3	23	70467669	Missense_Mutation	SNP	C	TCGA-OR-A5L9-01A-11D-A29I-10	1742490	70467669	84802891	89	9634										
GPRASP2	114928	broad.mit.edu	37	chrX	101971018	101971018	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0112359550561798	1	1	0.368808049535604	0	0.522478070175439	1	1	0	ggtggagcttcagcaatctgTgaatctgagccaggaactga	13	8	3	3	novel		TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	.	GPRASP2-131	NM_138437	exon4	c.T1221C	p.C407C	AATCTGTGAATCT	.	173	13	77	2	.	0	0	0	0	0	C	101971018	T	C	101971018	2	2	47	1	0	0	0	0	0	0	0	1	6744	1702	59	4		4	GPRASP2	23	101971018	Silent	SNP	T	TCGA-OR-A5L9-01A-11D-A29I-10	31503349	101971018	53299542	90	9635										
G6PD	2539	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	153761190	153761190	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0112359550561798	1	1	0.368808049535604	0	0.522478070175439	1	1	0	attctccacatagaggacgaCggctgcaaaagtggcggtgg	14	9	1	1	novel		TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	.	G6PD-135	NM_000402	exon9	c.G1108A	p.V370I	GGACGACGGCTGC	.	473	163	271	1	.	11	11	0	0	0	T	153761190	C	T	153761190	3	4	47	1	0	0	0	0	1	0	0	0	6165	536	19	1	549	1	G6PD	23	153761190	Missense_Mutation	SNP	C	TCGA-OR-A5L9-01A-11D-A29I-10	51790172	153761190	1509370	91	9636										
CYP4B1	1580	bcgsc.ca	37	chr1	47279175	47279175	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0147058823529412	1	1	0.494594594594595	0	0.54954954954955	1	1	0	acaagtgggaagagaaagctCgggagggtaagtcctttgac	15	6	0	2	rs4646487	byfrequency	TCGA-OR-A5LA-01A-11D-A29I-10	TCGA-OR-A5LA-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	88fcb98e-87f0-400d-a518-d71acd4d4f15	dbf1a7bc-94a6-4ca2-af78-a3649deac3ed	.	CYP4B1-92	NM_000779	exon5	c.C517T	p.R173W	AAAGCTCGGGAGG	.	70	4	80	0	C|0.839;T|0.161	0	0	0	0	0	T	47279175	C	T	47279175	3	4	48	1	0	0	0	0	1	0	0	0	4191	875	31	1	535	1	CYP4B1	1	47279175	Missense_Mutation	SNP	C	TCGA-OR-A5LA-01A-11D-A29I-10		47279175	201971446	1	9637										
IL12RB2	3595	bcgsc.ca	37	chr1	67852335	67852335	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0147058823529412	1	1	0.494594594594595	0	0.54954954954955	1	1	0	atggtgggcattttctcaacGcattacttccagcaaaagtg	9	9	1	0	rs4297265	byfrequency	TCGA-OR-A5LA-01A-11D-A29I-10	TCGA-OR-A5LA-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	88fcb98e-87f0-400d-a518-d71acd4d4f15	dbf1a7bc-94a6-4ca2-af78-a3649deac3ed	.	IL12RB2-92	NM_001559	exon14	c.G1929A	p.T643T	CTCAACGCATTAC	.	174	6	168	1	A|0.433;G|0.567	0	0	0	0	0	A	67852335	G	A	67852335	2	1	48	1	0	0	0	0	0	0	0	1	7648	1074	38	1		1	IL12RB2	1	67852335	Silent	SNP	G	TCGA-OR-A5LA-01A-11D-A29I-10	20573160	67852335	181398286	2	9638										
HMCN1	83872	ucsc.edu;bcgsc.ca	37	chr1	186031041	186031041	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0147058823529412	1	1	0.494594594594595	0	0.54954954954955	1	1	0	gatgctggccaatatacttgCgttgtaaggaatgcagctgg	13	7	0	0	rs7522627	byfrequency	TCGA-OR-A5LA-01A-11D-A29I-10	TCGA-OR-A5LA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	88fcb98e-87f0-400d-a518-d71acd4d4f15	dbf1a7bc-94a6-4ca2-af78-a3649deac3ed	.	HMCN1-113	NM_031935	exon47	c.C7371T	p.C2457C	TACTTGCGTTGTA	.	36	4	53	0	C|0.372;T|0.628	0	0	0	0	0	T	186031041	C	T	186031041	2	4	48	1	0	0	0	0	0	0	0	1	7241	776	27	1		1	HMCN1	1	186031041	Silent	SNP	C	TCGA-OR-A5LA-01A-11D-A29I-10	118178706	186031041	63219580	3	9639										
C1orf106	55765	hgsc.bcm.edu	37	chr1	200880978	200880978	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0147058823529412	1	1	0.494594594594595	0	0.54954954954955	1	1	0	cgcctggcgagtgggagctgCgccgcgcagccccgggccct	17	17	0	0	rs296520	byfrequency	TCGA-OR-A5LA-01A-11D-A29I-10	TCGA-OR-A5LA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	88fcb98e-87f0-400d-a518-d71acd4d4f15	dbf1a7bc-94a6-4ca2-af78-a3649deac3ed	.	C1orf106-93	NM_018265	exon9	c.C1654T	p.R552C	GAGCTGCGCCGCG	.	9	9	0	0	C|0.242;T|0.758	0	0	0	0	0	T	200880978	C	T	200880978	3	4	48	1	0	0	0	0	1	0	0	0	1986	768	27	1	1646	1	C1orf106	1	200880978	Missense_Mutation	SNP	C	TCGA-OR-A5LA-01A-11D-A29I-10	14849937	200880978	48369643	4	9640										
FEZ2	9637	hgsc.bcm.edu	37	chr2	36825137	36825137	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0147058823529412	1	1	0.494594594594595	0	0.54954954954955	1	1	0	tctcctccaagctgcaggccGgggccgggaaaccgtcggcg	15	15	1	0	rs1544655		TCGA-OR-A5LA-01A-11D-A29I-10	TCGA-OR-A5LA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	88fcb98e-87f0-400d-a518-d71acd4d4f15	dbf1a7bc-94a6-4ca2-af78-a3649deac3ed	.	FEZ2-23	NM_001042548	exon1	c.C149T	p.P50L	CAGGCCGGGGCCG	.	6	6	0	0	T|0.817;C|0.180	2	0	2	0	0	A	36825137	G	A	36825137	3	1	48	1	0	0	0	0	1	0	0	0	5843	1116	39	1	1029	1	FEZ2	2	36825137	Missense_Mutation	SNP	G	TCGA-OR-A5LA-01A-11D-A29I-10		36825137	206374236	5	9641										
USP34	9736	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	61463189	61463189	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0147058823529412	1	1	0.494594594594595	0	0.54954954954955	1	1	0	tagaatgaataaatgtctctAggacaaaggaagtgcttaac	9	5	1	2	novel		TCGA-OR-A5LA-01A-11D-A29I-10	TCGA-OR-A5LA-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	88fcb98e-87f0-400d-a518-d71acd4d4f15	dbf1a7bc-94a6-4ca2-af78-a3649deac3ed	.	USP34-579	NM_014709	exon56	c.T6938G	p.L2313R	GTCTCTAGGACAA	.	58	23	37	0	.	2	2	0	0	0	C	61463189	A	C	61463189	3	2	48	1	0	0	0	0	1	0	0	0	17103	420	15	5	3802	5	USP34	2	61463189	Missense_Mutation	SNP	A	TCGA-OR-A5LA-01A-11D-A29I-10	24638052	61463189	181736184	6	9642										
PRR21	643905	hgsc.bcm.edu	37	chr2	240982362	240982362	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0147058823529412	1	1	0.494594594594595	0	0.54954954954955	1	1	0	atgaaaagccgtggatgaagGgccgtggatgaagagctgtg	17	5	0	4	rs151246209	byfrequency	TCGA-OR-A5LA-01A-11D-A29I-10	TCGA-OR-A5LA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	88fcb98e-87f0-400d-a518-d71acd4d4f15	dbf1a7bc-94a6-4ca2-af78-a3649deac3ed	.	PRR21-70	NM_001080835	exon1	c.C38T	p.P13L	ATGAAGGGCCGTG	.	107	9	113	0	G|0.991;A|0.009	0	0	0	0	0	A	240982362	G	A	240982362	3	1	48	1	0	0	0	0	1	0	0	0	12624	1232	43	3	1134	3	PRR21	2	240982362	Missense_Mutation	SNP	G	TCGA-OR-A5LA-01A-11D-A29I-10	179519173	240982362	2217011	7	9643			1	48		2	2	28	N	G_C	5.930681e-05
PRR21	643905	hgsc.bcm.edu	37	chr2	240982389	240982389	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0147058823529412	1	1	0.494594594594595	0	0.54954954954955	1	1	0	gatgaagagctgtggatgaaCaggcatgcatgtggccaagg	16	6	0	3	rs143417758	byfrequency	TCGA-OR-A5LA-01A-11D-A29I-10	TCGA-OR-A5LA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	88fcb98e-87f0-400d-a518-d71acd4d4f15	dbf1a7bc-94a6-4ca2-af78-a3649deac3ed	.	PRR21-70	NM_001080835	exon1	c.G11C	p.C4S	GATGAACAGGCAT	.	86	5	88	0	C|0.998;G|0.002	0	0	0	0	0	G	240982389	C	G	240982389	3	3	48	1	0	0	0	0	1	0	0	0	12624	478	17	3	1161	3	PRR21	2	240982389	Missense_Mutation	SNP	C	TCGA-OR-A5LA-01A-11D-A29I-10	27	240982389	2216984	8	9644			1	48		2	2	28	N	G_C	5.930681e-05
NUP210	23225	bcgsc.ca	37	chr3	13421150	13421150	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0147058823529412	1	1	0.494594594594595	0	0.54954954954955	1	1	0	caagacagccaccggccgggCtgggtctccttcggggcccg	15	16	1	1	rs7628051	byfrequency	TCGA-OR-A5LA-01A-11D-A29I-10	TCGA-OR-A5LA-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	88fcb98e-87f0-400d-a518-d71acd4d4f15	dbf1a7bc-94a6-4ca2-af78-a3649deac3ed	.	NUP210-256	NM_024923	exon7	c.G889A	p.A297T	GCCGGGCTGGGTC	.	134	7	200	2	C|0.416;T|0.584	0	0	0	0	0	T	13421150	C	T	13421150	3	4	48	1	0	0	0	0	1	0	0	0	10789	797	28	3	4910	3	NUP210	3	13421150	Missense_Mutation	SNP	C	TCGA-OR-A5LA-01A-11D-A29I-10		13421150	184601280	9	9645										
CCDC71	64925	ucsc.edu;bcgsc.ca	37	chr3	49200692	49200692	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0147058823529412	1	1	0.494594594594595	0	0.54954954954955	1	1	0	ctttggccttagccttgaccTgtgctgccttggccttggcc	11	14	0	1	rs4955419	byfrequency	TCGA-OR-A5LA-01A-11D-A29I-10	TCGA-OR-A5LA-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	88fcb98e-87f0-400d-a518-d71acd4d4f15	dbf1a7bc-94a6-4ca2-af78-a3649deac3ed	.	CCDC71-91	NM_022903	exon2	c.A950T	p.Q317L	TTGACCTGTGCTG	.	31	4	71	0	T|0.394;A|0.606	15	15	0	0	0	A	49200692	T	A	49200692	3	1	48	1	0	0	0	0	1	0	0	0	2850	1580	55	5	457	5	CCDC71	3	49200692	Missense_Mutation	SNP	T	TCGA-OR-A5LA-01A-11D-A29I-10	35779542	49200692	148821738	10	9646										
ROBO1	6091	hgsc.bcm.edu;bcgsc.ca	37	chr3	78710311	78710311	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0147058823529412	1	1	0.494594594594595	0	0.54954954954955	1	1	0	ccacactgtttttggctggcGtcctcacttcaaaaactaac	6	13	2	0	rs201271022	alternate_allele	TCGA-OR-A5LA-01A-11D-A29I-10	TCGA-OR-A5LA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	88fcb98e-87f0-400d-a518-d71acd4d4f15	dbf1a7bc-94a6-4ca2-af78-a3649deac3ed	.	ROBO1-67	NM_002941	exon16	c.C2189A	p.T730K	GCTGGCGTCCTCA	.	57	4	45	0	.	0	0	0	0	0	T	78710311	G	T	78710311	3	4	48	1	0	0	0	0	1	0	0	0	13548	1145	40	2	2830	2	ROBO1	3	78710311	Missense_Mutation	SNP	G	TCGA-OR-A5LA-01A-11D-A29I-10	29509619	78710311	119312119	11	9647										
OPA1	4976	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	193380667	193380667	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0147058823529412	1	1	0.494594594594595	0	0.54954954954955	1	1	0	atgttgaaatgtaatgaggaGcacccagcttatcttgcaag	10	7	1	2	novel		TCGA-OR-A5LA-01A-11D-A29I-10	TCGA-OR-A5LA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	88fcb98e-87f0-400d-a518-d71acd4d4f15	dbf1a7bc-94a6-4ca2-af78-a3649deac3ed	.	OPA1-68	NM_130837	exon26	c.G2577T	p.E859D	TGAGGAGCACCCA	.	162	82	163	1	.	4	0	4	0	0	T	193380667	G	T	193380667	3	4	48	1	0	0	0	0	1	0	0	0	10900	962	34	3	2679	3	OPA1	3	193380667	Missense_Mutation	SNP	G	TCGA-OR-A5LA-01A-11D-A29I-10	114670356	193380667	4641763	12	9648										
CRIPAK	285464	hgsc.bcm.edu	37	chr4	1388974	1388974	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0147058823529412	1	1	0.494594594594595	0	0.54954954954955	1	1	0	cgcctgctcacacgtgccgaTgcggagtgcccgcctgctca	12	17	2	0	rs71614969	bycluster	TCGA-OR-A5LA-01A-11D-A29I-10	TCGA-OR-A5LA-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	88fcb98e-87f0-400d-a518-d71acd4d4f15	dbf1a7bc-94a6-4ca2-af78-a3649deac3ed	.	CRIPAK-90	NM_175918	exon1	c.T675C	p.D225D	TGCCGATGCGGAG	.	100	8	19	0	C|1.000;|0.000	16	10	6	0	0	C	1388974	T	C	1388974	2	2	48	1	0	0	0	0	0	0	0	1	3883	1461	51	4		4	CRIPAK	4	1388974	Silent	SNP	T	TCGA-OR-A5LA-01A-11D-A29I-10		1388974	189765302	13	9649										
ZAR1	326340	hgsc.bcm.edu	37	chr4	48492434	48492434	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0147058823529412	1	1	0.494594594594595	0	0.54954954954955	1	1	0	gcgggcggcagctggcagcaGcgcggcaggggctgccttcc	19	14	0	0	rs10008444		TCGA-OR-A5LA-01A-11D-A29I-10	TCGA-OR-A5LA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	88fcb98e-87f0-400d-a518-d71acd4d4f15	dbf1a7bc-94a6-4ca2-af78-a3649deac3ed	.	ZAR1-90	NM_175619	exon1	c.G126C	p.Q42H	GCAGCAGCGCGGC	.	11	11	1	0	G|0.025;C|0.975	0	0	0	0	0	C	48492434	G	C	48492434	3	2	48	1	0	0	0	0	1	0	0	0	17553	962	34	3	128	3	ZAR1	4	48492434	Missense_Mutation	SNP	G	TCGA-OR-A5LA-01A-11D-A29I-10	47103460	48492434	142661842	14	9650										
AMBN	258	hgsc.bcm.edu	37	chr4	71462749	71462749	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0147058823529412	1	1	0.494594594594595	0	0.54954954954955	1	1	0	aatctggaacaccgggtatgGctagtttgagccttgaggta	13	7	1	2	novel		TCGA-OR-A5LA-01A-11D-A29I-10	TCGA-OR-A5LA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	88fcb98e-87f0-400d-a518-d71acd4d4f15	dbf1a7bc-94a6-4ca2-af78-a3649deac3ed	.	AMBN-94	NM_016519	exon3	c.G118T	p.A40S	GGTATGGCTAGTT	.	72	4	32	0	.	0	0	0	0	0	T	71462749	G	T	71462749	3	4	48	1	0	0	0	0	1	0	0	0	563	1203	42	3	128	3	AMBN	4	71462749	Missense_Mutation	SNP	G	TCGA-OR-A5LA-01A-11D-A29I-10	22970315	71462749	119691527	15	9651										
FAM170A	340069	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	118970068	118970068	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0147058823529412	1	1	0.494594594594595	0	0.54954954954955	1	1	0	gcctgccaggctcacccaccGttgaggacacacccagagcc	10	18	1	2	novel		TCGA-OR-A5LA-01A-11D-A29I-10	TCGA-OR-A5LA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	88fcb98e-87f0-400d-a518-d71acd4d4f15	dbf1a7bc-94a6-4ca2-af78-a3649deac3ed	.	FAM170A-91	NM_182761	exon3	c.G625A	p.V209I	CCCACCGTTGAGG	.	115	44	92	0	.	0	0	0	0	0	A	118970068	G	A	118970068	3	1	48	1	0	0	0	0	1	0	0	0	5505	1145	40	1	635	1	FAM170A	5	118970068	Missense_Mutation	SNP	G	TCGA-OR-A5LA-01A-11D-A29I-10		118970068	61945192	16	9652										
AARS2	57505	bcgsc.ca	37	chr6	44268371	44268371	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0147058823529412	1	1	0.494594594594595	0	0.54954954954955	1	1	0	gtgccttgggccaccactcgTgagccccacgccttgccccc	10	20	0	1	rs325008	byfrequency	TCGA-OR-A5LA-01A-11D-A29I-10	TCGA-OR-A5LA-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	88fcb98e-87f0-400d-a518-d71acd4d4f15	dbf1a7bc-94a6-4ca2-af78-a3649deac3ed	.	AARS2-91	NM_020745	exon22	c.A2871G	p.S957S	CACTCGTGAGCCC	.	76	4	83	1	T|0.130;C|0.870	2	2	0	0	0	C	44268371	T	C	44268371	2	2	48	1	0	0	0	0	0	0	0	1	20	1683	59	4		4	AARS2	6	44268371	Silent	SNP	T	TCGA-OR-A5LA-01A-11D-A29I-10		44268371	126846696	17	9653										
FAM26F	441168	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	chr6	116783563	116783563	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0147058823529412	1	1	0.494594594594595	0	0.54954954954955	1	1	0	ccgctggtgccgtgcaaccaGgccaaggcgtcggacgtgca	15	14	0	0	novel		TCGA-OR-A5LA-01A-11D-A29I-10	TCGA-OR-A5LA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	88fcb98e-87f0-400d-a518-d71acd4d4f15	dbf1a7bc-94a6-4ca2-af78-a3649deac3ed	.	FAM26F-68	NM_001010919	exon2	c.A471A	p.G157G	CAACCAGGCCAAG	.	24	15	14	0	.	1	1	0	0	0	A	116783563	G	A	116783563	2	1	48	1	0	0	0	0	0	0	0	1	5570	991	35	3		3	FAM26F	6	116783563	Silent	SNP	G	TCGA-OR-A5LA-01A-11D-A29I-10	72515192	116783563	54331504	18	9654										
MAP7	9053	hgsc.bcm.edu	37	chr6	136682172	136682172	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0147058823529412	1	1	0.494594594594595	0	0.54954954954955	1	1	0	ggcgcgctctgcctcctcccGctcgcgcagcgcccgctcct	11	22	1	0	rs2076190	byfrequency	TCGA-OR-A5LA-01A-11D-A29I-10	TCGA-OR-A5LA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	88fcb98e-87f0-400d-a518-d71acd4d4f15	dbf1a7bc-94a6-4ca2-af78-a3649deac3ed	.	MAP7-90	NM_001198609	exon12	c.C1762T	p.R588W	CCTCCCGCTCGCG	.	8	8	0	0	G|0.243;A|0.757	0	0	0	0	0	A	136682172	G	A	136682172	3	1	48	1	0	0	0	0	1	0	0	0	9294	1086	38	1	605	1	MAP7	6	136682172	Missense_Mutation	SNP	G	TCGA-OR-A5LA-01A-11D-A29I-10	19898609	136682172	34432895	19	9655										
SYNE1	23345	ucsc.edu	37	chr6	152469513	152469513	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0147058823529412	1	1	0.494594594594595	0	0.54954954954955	1	1	0	gtcgtgctcatcgtctgggaGctagaagggaagtcaaggca	15	8	3	1	novel		TCGA-OR-A5LA-01A-11D-A29I-10	TCGA-OR-A5LA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	88fcb98e-87f0-400d-a518-d71acd4d4f15	dbf1a7bc-94a6-4ca2-af78-a3649deac3ed	.	SYNE1-607	NM_182961	exon137	c.C24643T	p.L8215F	CTGGGAGCTAGAA	.	37	4	43	0	.	0	0	0	0	0	A	152469513	G	A	152469513	3	1	48	1	0	0	0	0	1	0	0	0	15482	985	34	3	1863	3	SYNE1	6	152469513	Missense_Mutation	SNP	G	TCGA-OR-A5LA-01A-11D-A29I-10	15787341	152469513	18645554	20	9656										
GET4	51608	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	930643	930643	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0147058823529412	1	1	0.494594594594595	0	0.54954954954955	1	1	0	tgccaacatgctggtggagtAttccacgtcccgcggcttcc	11	14	0	0	novel		TCGA-OR-A5LA-01A-11D-A29I-10	TCGA-OR-A5LA-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	88fcb98e-87f0-400d-a518-d71acd4d4f15	dbf1a7bc-94a6-4ca2-af78-a3649deac3ed	.	GET4-90	NM_015949	exon5	c.A545G	p.Y182C	TGGAGTATTCCAC	.	254	71	221	0	.	116	67	49	0	0	G	930643	A	G	930643	3	3	48	1	0	0	0	0	1	0	0	0	6356	449	16	4	563	4	GET4	7	930643	Missense_Mutation	SNP	A	TCGA-OR-A5LA-01A-11D-A29I-10		930643	158208020	21	9657										
TNRC18	84629	hgsc.bcm.edu	37	chr7	5352665	5352665	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0147058823529412	1	1	0.494594594594595	0	0.54954954954955	1	1	0	gaggaggaggaggaggaggaTgaggaggaggaggaggaggc	26	1	0	1	novel		TCGA-OR-A5LA-01A-11D-A29I-10	TCGA-OR-A5LA-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	88fcb98e-87f0-400d-a518-d71acd4d4f15	dbf1a7bc-94a6-4ca2-af78-a3649deac3ed	.	TNRC18-46	NM_001080495	exon27	c.A7857C	p.S2619S	GGAGGATGAGGAG	.	12	7	7	0	.	7	0	5	2	0	G	5352665	T	G	5352665	2	3	48	1	0	0	0	0	0	0	0	1	16376	1451	51	5		5	TNRC18	7	5352665	Silent	SNP	T	TCGA-OR-A5LA-01A-11D-A29I-10	4422022	5352665	153785998	22	9658										
TNRC18	84629	hgsc.bcm.edu	37	chr7	5372406	5372406	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0147058823529412	1	1	0.494594594594595	0	0.54954954954955	1	1	0	tgcaggaagatgcgctcgctGcggcgccgcgtccacaggtc	15	14	0	1	rs13238738	byfrequency	TCGA-OR-A5LA-01A-11D-A29I-10	TCGA-OR-A5LA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	88fcb98e-87f0-400d-a518-d71acd4d4f15	dbf1a7bc-94a6-4ca2-af78-a3649deac3ed	.	TNRC18-46	NM_001080495	exon19	c.C5994A	p.R1998R	CTCGCTGCGGCGC	.	6	6	0	0	G|0.411;T|0.589	0	0	0	0	0	T	5372406	G	T	5372406	2	4	48	1	0	0	0	0	0	0	0	1	16376	1306	46	3		3	TNRC18	7	5372406	Silent	SNP	G	TCGA-OR-A5LA-01A-11D-A29I-10	19741	5372406	153766257	23	9659										
CLDN23	137075	hgsc.bcm.edu	37	chr8	8560536	8560536	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0147058823529412	1	1	0.494594594594595	0	0.54954954954955	1	1	0	gcagcgtcagcaccatccaaGtggagtggcccgagcccgac	13	15	1	0	rs12548737	byfrequency	TCGA-OR-A5LA-01A-11D-A29I-10	TCGA-OR-A5LA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	88fcb98e-87f0-400d-a518-d71acd4d4f15	dbf1a7bc-94a6-4ca2-af78-a3649deac3ed	.	.	NM_194284	exon1	c.G628A	p.V210M	ATCCAAGTGGAGT	.	11	4	0	0	G|0.907;A|0.093	0	0	0	0	0	A	8560536	G	A	8560536	3	1	48	1	0	0	0	0	1	0	0	0	3490	1029	36	3	630	3	CLDN23	8	8560536	Missense_Mutation	SNP	G	TCGA-OR-A5LA-01A-11D-A29I-10		8560536	137803486	24	9660										
MAL2	114569	hgsc.bcm.edu	37	chr8	120220776	120220776	+	Splice_Site	DEL	G	G	-													0.0147058823529412	1	1	0.494594594594595	0	0.54954954954955	1	1	0	cgtgtccttcccgccgccccGgggtcaccctgcccgccggc					novel		TCGA-OR-A5LA-01A-11D-A29I-10	TCGA-OR-A5LA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	88fcb98e-87f0-400d-a518-d71acd4d4f15	dbf1a7bc-94a6-4ca2-af78-a3649deac3ed	.	.	NM_052886	exon1	c.64+1G>-	.	CGCCCCGGGGTCA	.	12	12	0	0	.	0	0	0	0	0	-	120220776	G	-	120220776	8	5	48	1	0	1	0	1	0	0	1	0	9228	1116	39	0	67	0	MAL2	8	120220776	Splice_Site	DEL	G	TCGA-OR-A5LA-01A-11D-A29I-10	111660240	120220776	26143246	25	9661										
ZNF696	79943	hgsc.bcm.edu	37	chr8	144378868	144378868	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0147058823529412	1	1	0.494594594594595	0	0.54954954954955	1	1	0	ggcttcttccggcaccagcgActccacacgggcgagaagcc	12	16	1	1	rs7386259	byfrequency	TCGA-OR-A5LA-01A-11D-A29I-10	TCGA-OR-A5LA-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	88fcb98e-87f0-400d-a518-d71acd4d4f15	dbf1a7bc-94a6-4ca2-af78-a3649deac3ed	.	ZNF696-90	NM_030895	exon3	c.A1023G	p.R341R	CCAGCGACTCCAC	.	4	4	0	0	A|0.118;G|0.882	1	0	1	0	0	G	144378868	A	G	144378868	2	3	48	1	0	0	0	0	0	0	0	1	18136	262	10	4		4	ZNF696	8	144378868	Silent	SNP	A	TCGA-OR-A5LA-01A-11D-A29I-10	24158092	144378868	1985154	26	9662										
PLEC	5339	hgsc.bcm.edu	37	chr8	144998190	144998190	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0147058823529412	1	1	0.494594594594595	0	0.54954954954955	1	1	0	gccagctgccgctgcctcgcAgcctccagctcggcctgctc	11	20	0	0	rs2857829	byfrequency	TCGA-OR-A5LA-01A-11D-A29I-10	TCGA-OR-A5LA-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	88fcb98e-87f0-400d-a518-d71acd4d4f15	dbf1a7bc-94a6-4ca2-af78-a3649deac3ed	.	PLEC-141	NM_201380	exon31	c.T6318C	p.A2106A	CCTCGCAGCCTCC	.	12	12	0	0	A|0.738;G|0.262	4	0	4	0	0	G	144998190	A	G	144998190	2	3	48	1	0	0	0	0	0	0	0	1	12081	175	7	4		4	PLEC	8	144998190	Silent	SNP	A	TCGA-OR-A5LA-01A-11D-A29I-10	619322	144998190	1365832	27	9663			2	49		3	3	3595	N	C_A	3.099046e-05
PLEC	5339	hgsc.bcm.edu	37	chr8	145001588	145001588	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0147058823529412	1	1	0.494594594594595	0	0.54954954954955	1	1	0	ccaagcccacctgctcctgcCgcagctgctcccgcacagcc	8	22	0	0	rs11136334	byfrequency	TCGA-OR-A5LA-01A-11D-A29I-10	TCGA-OR-A5LA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	88fcb98e-87f0-400d-a518-d71acd4d4f15	dbf1a7bc-94a6-4ca2-af78-a3649deac3ed	.	PLEC-141	NM_201380	exon27	c.G4157A	p.R1386Q	TCCTGCCGCAGCT	.	14	14	0	0	C|0.707;T|0.293	0	0	0	0	0	T	145001588	C	T	145001588	3	4	48	1	0	0	0	0	1	0	0	0	12081	652	23	1	9921	1	PLEC	8	145001588	Missense_Mutation	SNP	C	TCGA-OR-A5LA-01A-11D-A29I-10	3398	145001588	1362434	28	9664			2	49		3	3	3595	N	C_A	3.099046e-05
PLEC	5339	hgsc.bcm.edu	37	chr8	145001784	145001784	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0147058823529412	1	1	0.494594594594595	0	0.54954954954955	1	1	0	agcctgccagcgctcaagcaActgggcgacccgctcccgcc	11	19	1	0	rs3135109	byfrequency	TCGA-OR-A5LA-01A-11D-A29I-10	TCGA-OR-A5LA-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	88fcb98e-87f0-400d-a518-d71acd4d4f15	dbf1a7bc-94a6-4ca2-af78-a3649deac3ed	.	PLEC-141	NM_201380	exon27	c.T3961C	p.L1321L	CAAGCAACTGGGC	.	8	8	0	0	G|0.246;A|0.754	1	0	1	0	0	G	145001784	A	G	145001784	2	3	48	1	0	0	0	0	0	0	0	1	12081	40	2	4		4	PLEC	8	145001784	Silent	SNP	A	TCGA-OR-A5LA-01A-11D-A29I-10	196	145001784	1362238	29	9665			2	49		3	3	3595	N	C_A	3.099046e-05
ZNF517	340385	hgsc.bcm.edu	37	chr8	146033347	146033347	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0147058823529412	1	1	0.494594594594595	0	0.54954954954955	1	1	0	gggtgcccaggacggcggcgTggggcagggcgccctgctcg	21	13	0	0	rs2976653		TCGA-OR-A5LA-01A-11D-A29I-10	TCGA-OR-A5LA-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	88fcb98e-87f0-400d-a518-d71acd4d4f15	dbf1a7bc-94a6-4ca2-af78-a3649deac3ed	.	ZNF517-90	NM_213605	exon5	c.T1046C	p.V349A	GCGGCGTGGGGCA	.	11	11	0	0	G|0.992;C|0.006	2	0	2	0	0	C	146033347	T	C	146033347	3	2	48	1	0	0	0	0	1	0	0	0	17998	1696	59	4	1060	4	ZNF517	8	146033347	Missense_Mutation	SNP	T	TCGA-OR-A5LA-01A-11D-A29I-10	1031563	146033347	330675	30	9666										
TMEM2	23670	broad.mit.edu	37	chr9	74300311	74300312	+	Splice_Site	INS	-	-	AA													0.0147058823529412	1	1	0.494594594594595	0	0.54954954954955	1	1	0	ccaaaaatatggtactccctINSaaaaaaaaaaaaaaaaaaga					rs36080695	alternate_allele	TCGA-OR-A5LA-01A-11D-A29I-10	TCGA-OR-A5LA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	88fcb98e-87f0-400d-a518-d71acd4d4f15	dbf1a7bc-94a6-4ca2-af78-a3649deac3ed	.	TMEM2-92	NM_001135820	exon24	c.3767-2->TT	.	ACTCCCTAAAAAA	.	7	2	7	0	A|1.000;|0.000	0	0	0	0	0	AA	74300312	-	AA	74300311	8	5	48	1	0	1	1	0	0	0	1	0	16158	1536	53	0	201	0	TMEM2	9	74300311	Splice_Site	INS	-	TCGA-OR-A5LA-01A-11D-A29I-10		74300311	66913120	31	9667										
SURF6	6838	hgsc.bcm.edu	37	chr9	136198859	136198859	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0147058823529412	1	1	0.494594594594595	0	0.54954954954955	1	1	0	tcttctccaccacgccggccGtgcgcttctcccaccggcgc	9	21	3	0	rs1800867	byfrequency	TCGA-OR-A5LA-01A-11D-A29I-10	TCGA-OR-A5LA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	88fcb98e-87f0-400d-a518-d71acd4d4f15	dbf1a7bc-94a6-4ca2-af78-a3649deac3ed	.	SURF6-91	NM_006753	exon5	c.C932T	p.T311M	CCGGCCGTGCGCT	.	27	16	2	0	G|0.988;A|0.012	10	0	10	0	0	A	136198859	G	A	136198859	3	1	48	1	0	0	0	0	1	0	0	0	15443	1145	40	1	157	1	SURF6	9	136198859	Missense_Mutation	SNP	G	TCGA-OR-A5LA-01A-11D-A29I-10	61898548	136198859	5014572	32	9668										
GPRIN2	9721	hgsc.bcm.edu	37	chr10	47000217	47000217	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0147058823529412	1	1	0.494594594594595	0	0.54954954954955	1	1	0	tgtcatgcagtccctgcggcGccccagctgctgcggctgct	13	16	1	0	rs72780221	byfrequency	TCGA-OR-A5LA-01A-11D-A29I-10	TCGA-OR-A5LA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	88fcb98e-87f0-400d-a518-d71acd4d4f15	dbf1a7bc-94a6-4ca2-af78-a3649deac3ed	.	GPRIN2-90	NM_014696	exon3	c.G1337A	p.R446H	TGCGGCGCCCCAG	.	19	9	2	0	G|0.901;A|0.099	0	0	0	0	0	A	47000217	G	A	47000217	3	1	48	1	0	0	0	0	1	0	0	0	6751	1087	38	1	1339	1	GPRIN2	10	47000217	Missense_Mutation	SNP	G	TCGA-OR-A5LA-01A-11D-A29I-10		47000217	88534530	33	9669										
AGAP11	119385	broad.mit.edu;bcgsc.ca	37	chr10	88768599	88768599	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0147058823529412	1	1	0.494594594594595	0	0.54954954954955	1	1	0	ctgcgcacccatctccagctCtaaaagcaatggcctatcca	6	16	2	0	novel		TCGA-OR-A5LA-01A-11D-A29I-10	TCGA-OR-A5LA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	88fcb98e-87f0-400d-a518-d71acd4d4f15	dbf1a7bc-94a6-4ca2-af78-a3649deac3ed	.	.	NM_133447	exon12	c.C590T	p.S197F	CCAGCTCTAAAAG	.	586	24	670	0	.	10	10	0	0	0	T	88768599	C	T	88768599	3	4	48	1	0	0	0	0	1	0	0	0	367	913	32	3	604	3	AGAP11	10	88768599	Missense_Mutation	SNP	C	TCGA-OR-A5LA-01A-11D-A29I-10	41768382	88768599	46766148	34	9670										
NFKB2	4791	hgsc.bcm.edu	37	chr10	104159196	104159196	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0147058823529412	1	1	0.494594594594595	0	0.54954954954955	1	1	0	ggggaggaagccgcggagccAagcgccccctccaggacccc	15	17	0	0	rs4919633	byfrequency	TCGA-OR-A5LA-01A-11D-A29I-10	TCGA-OR-A5LA-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	88fcb98e-87f0-400d-a518-d71acd4d4f15	dbf1a7bc-94a6-4ca2-af78-a3649deac3ed	.	NFKB2-522	NM_001077494	exon13	c.A1269G	p.P423P	GGAGCCAAGCGCC	.	7	7	0	0	A|0.009;G|0.991	2	0	2	0	0	G	104159196	A	G	104159196	2	3	48	1	0	0	0	0	0	0	0	1	10405	117	5	4		4	NFKB2	10	104159196	Silent	SNP	A	TCGA-OR-A5LA-01A-11D-A29I-10	15390597	104159196	31375551	35	9671										
KNDC1	85442	hgsc.bcm.edu	37	chr10	135000148	135000148	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0147058823529412	1	1	0.494594594594595	0	0.54954954954955	1	1	0	gagagaattccagaaggagcTaggcagctggaaagtgcagc	15	7	0	2	rs3810965	byfrequency	TCGA-OR-A5LA-01A-11D-A29I-10	TCGA-OR-A5LA-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	88fcb98e-87f0-400d-a518-d71acd4d4f15	dbf1a7bc-94a6-4ca2-af78-a3649deac3ed	.	KNDC1-229	NM_152643	exon6	c.T1296C	p.A432A	AGGAGCTAGGCAG	.	4	4	1	0	T|0.607;C|0.393	1	0	1	0	0	C	135000148	T	C	135000148	2	2	48	1	0	0	0	0	0	0	0	1	8447	1509	53	4		4	KNDC1	10	135000148	Silent	SNP	T	TCGA-OR-A5LA-01A-11D-A29I-10	30840952	135000148	534599	36	9672			3	50		2	2	12	N	T_A	2.416246e-05
KNDC1	85442	hgsc.bcm.edu	37	chr10	135000159	135000159	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0147058823529412	1	1	0.494594594594595	0	0.54954954954955	1	1	0	agaaggagctaggcagctggAaagtgcagccgcggagcagg	18	8	0	1	rs3810964	byfrequency	TCGA-OR-A5LA-01A-11D-A29I-10	TCGA-OR-A5LA-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	88fcb98e-87f0-400d-a518-d71acd4d4f15	dbf1a7bc-94a6-4ca2-af78-a3649deac3ed	.	KNDC1-229	NM_152643	exon6	c.A1307G	p.E436G	AGCTGGAAAGTGC	.	4	4	1	0	A|0.608;G|0.392	0	0	0	0	0	G	135000159	A	G	135000159	3	3	48	1	0	0	0	0	1	0	0	0	8447	246	9	4	1329	4	KNDC1	10	135000159	Missense_Mutation	SNP	A	TCGA-OR-A5LA-01A-11D-A29I-10	11	135000159	534588	37	9673			3	50		2	2	12	N	T_A	2.416246e-05
MUC6	4588	broad.mit.edu	37	chr11	1027716	1027716	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0147058823529412	1	1	0.494594594594595	0	0.54954954954955	1	1	0	acactgcttctccagccccaGagcaggacgccccgcaagga	10	17	1	1	novel		TCGA-OR-A5LA-01A-11D-A29I-10	TCGA-OR-A5LA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	88fcb98e-87f0-400d-a518-d71acd4d4f15	dbf1a7bc-94a6-4ca2-af78-a3649deac3ed	.	MUC6-23	NM_005961	exon16	c.C1950A	p.L650L	GCCCCAGAGCAGG	.	78	3	81	0	.	0	0	0	0	0	T	1027716	G	T	1027716	2	4	48	1	0	0	0	0	0	0	0	1	10008	929	33	3		3	MUC6	11	1027716	Silent	SNP	G	TCGA-OR-A5LA-01A-11D-A29I-10		1027716	133978800	38	9674										
MUC5B	727897	hgsc.bcm.edu	37	chr11	1253980	1253980	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0147058823529412	1	1	0.494594594594595	0	0.54954954954955	1	1	0	caagggcgtacagctcagcgActggagggacggcgtctgca	16	11	2	0	rs202127660		TCGA-OR-A5LA-01A-11D-A29I-10	TCGA-OR-A5LA-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	88fcb98e-87f0-400d-a518-d71acd4d4f15	dbf1a7bc-94a6-4ca2-af78-a3649deac3ed	.	.	NM_002458	exon17	c.A2045G	p.D682G	TCAGCGACTGGAG	.	90	7	45	0	.	0	0	0	0	0	G	1253980	A	G	1253980	3	3	48	1	0	0	0	0	1	0	0	0	10007	275	10	4	2120	4	MUC5B	11	1253980	Missense_Mutation	SNP	A	TCGA-OR-A5LA-01A-11D-A29I-10	226264	1253980	133752536	39	9675										
OR9G4	283189	bcgsc.ca	37	chr11	56510623	56510623	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0147058823529412	1	1	0.494594594594595	0	0.54954954954955	1	1	0	tagcaagaatgctggagagtActgtgaagcccaccacacca	10	11	0	3	rs513873	byfrequency	TCGA-OR-A5LA-01A-11D-A29I-10	TCGA-OR-A5LA-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	88fcb98e-87f0-400d-a518-d71acd4d4f15	dbf1a7bc-94a6-4ca2-af78-a3649deac3ed	.	OR9G4-71	NM_001005284	exon1	c.T665C	p.V222A	GAGAGTACTGTGA	.	118	7	118	1	A|0.748;G|0.252	0	0	0	0	0	G	56510623	A	G	56510623	3	3	48	1	0	0	0	0	1	0	0	0	11280	391	14	4	321	4	OR9G4	11	56510623	Missense_Mutation	SNP	A	TCGA-OR-A5LA-01A-11D-A29I-10	55256643	56510623	78495893	40	9676										
USP35	57558	broad.mit.edu	37	chr11	77920714	77920714	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0147058823529412	1	1	0.494594594594595	0	0.54954954954955	1	1	0	tcgccttccctcctcctgagCgctgtcgccgccgccgcctg	10	21	0	1	novel		TCGA-OR-A5LA-01A-11D-A29I-10	TCGA-OR-A5LA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	88fcb98e-87f0-400d-a518-d71acd4d4f15	dbf1a7bc-94a6-4ca2-af78-a3649deac3ed	.	USP35-637	NM_020798	exon10	c.C1813T	p.R605C	CCTGAGCGCTGTC	.	81	4	97	0	.	0	0	0	0	0	T	77920714	C	T	77920714	3	4	48	1	0	0	0	0	1	0	0	0	17104	768	27	1	1847	1	USP35	11	77920714	Missense_Mutation	SNP	C	TCGA-OR-A5LA-01A-11D-A29I-10	21410091	77920714	57085802	41	9677										
MMP8	4317	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	102586132	102586132	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0147058823529412	1	1	0.494594594594595	0	0.54954954954955	1	1	0	agagaaataaaattcatttcGactctttgtagctgaggatg	9	5	2	2	novel		TCGA-OR-A5LA-01A-11D-A29I-10	TCGA-OR-A5LA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	88fcb98e-87f0-400d-a518-d71acd4d4f15	dbf1a7bc-94a6-4ca2-af78-a3649deac3ed	.	MMP8-229	NM_002424	exon7	c.C939T	p.V313V	CATTTCGACTCTT	.	68	8	68	0	.	0	0	0	0	0	A	102586132	G	A	102586132	2	1	48	1	0	0	0	0	0	0	0	1	9696	1045	37	1		1	MMP8	11	102586132	Silent	SNP	G	TCGA-OR-A5LA-01A-11D-A29I-10	24665418	102586132	32420384	42	9678										
UBE3B	89910	broad.mit.edu	37	chr12	109947450	109947450	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0147058823529412	1	1	0.494594594594595	0	0.54954954954955	1	1	0	aacagatttcattcaaactgGaagagctggtcactatctcc	7	10	4	2	novel		TCGA-OR-A5LA-01A-11D-A29I-10	TCGA-OR-A5LA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	88fcb98e-87f0-400d-a518-d71acd4d4f15	dbf1a7bc-94a6-4ca2-af78-a3649deac3ed	.	UBE3B-660	NM_130466	exon16	c.G1672T	p.E558X	AAACTGGAAGAGC	.	88	3	70	0	.	2	2	0	0	0	T	109947450	G	T	109947450	4	4	48	1	0	0	0	0	0	1	0	0	16918	1175	41	3	1726	3	UBE3B	12	109947450	Nonsense_Mutation	SNP	G	TCGA-OR-A5LA-01A-11D-A29I-10		109947450	23904445	43	9679										
FAM109A	144717	hgsc.bcm.edu	37	chr12	111800836	111800836	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0147058823529412	1	1	0.494594594594595	0	0.54954954954955	1	1	0	ggcagggccatgccacccccGccacgtacagccgccagctg	12	19	0	0	novel		TCGA-OR-A5LA-01A-11D-A29I-10	TCGA-OR-A5LA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	88fcb98e-87f0-400d-a518-d71acd4d4f15	dbf1a7bc-94a6-4ca2-af78-a3649deac3ed	.	FAM109A-90	NM_001177996	exon4	c.C435T	p.G145G	ACCCCCGCCACGT	.	19	12	0	0	.	0	0	0	0	0	A	111800836	G	A	111800836	2	1	48	1	0	0	0	0	0	0	0	1	5410	1074	38	1		1	FAM109A	12	111800836	Silent	SNP	G	TCGA-OR-A5LA-01A-11D-A29I-10	1853386	111800836	22051059	44	9680										
PITPNM2	57605	bcgsc.ca	37	chr12	123471094	123471094	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0147058823529412	1	1	0.494594594594595	0	0.54954954954955	1	1	0	ttggtggagccataggccgcGtgcacgcgcaggtgcagctg	17	11	0	0	rs12811109	byfrequency	TCGA-OR-A5LA-01A-11D-A29I-10	TCGA-OR-A5LA-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	88fcb98e-87f0-400d-a518-d71acd4d4f15	dbf1a7bc-94a6-4ca2-af78-a3649deac3ed	.	PITPNM2-228	NM_020845	exon24	c.C3615T	p.H1205H	GGCCGCGTGCACG	.	206	8	137	0	G|0.860;A|0.140	4	4	0	0	0	A	123471094	G	A	123471094	2	1	48	1	0	0	0	0	0	0	0	1	11980	1136	40	1		1	PITPNM2	12	123471094	Silent	SNP	G	TCGA-OR-A5LA-01A-11D-A29I-10	11670258	123471094	10380801	45	9681										
SOLH	6650	hgsc.bcm.edu	37	chr16	597505	597505	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0147058823529412	1	1	0.494594594594595	0	0.54954954954955	1	1	0	ccagccagggcccagctgccGaaccagagccgcccagggtc	13	18	0	1	novel		TCGA-OR-A5LA-01A-11D-A29I-10	TCGA-OR-A5LA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	88fcb98e-87f0-400d-a518-d71acd4d4f15	dbf1a7bc-94a6-4ca2-af78-a3649deac3ed	.	SOLH-523	NM_005632	exon4	c.G667A	p.E223K	GCTGCCGAACCAG	.	21	11	0	0	.	0	0	0	0	0	A	597505	G	A	597505	3	1	48	1	0	0	0	0	1	0	0	0	14960	1059	37	1	669	1	SOLH	16	597505	Missense_Mutation	SNP	G	TCGA-OR-A5LA-01A-11D-A29I-10		597505	89757248	46	9682										
TELO2	9894	ucsc.edu;bcgsc.ca	37	chr16	1547477	1547477	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0147058823529412	1	1	0.494594594594595	0	0.54954954954955	1	1	0	ccggaccgggccatggaggcTgtgctgaccgggctggtgga	19	11	0	1	rs2745108	byfrequency	TCGA-OR-A5LA-01A-11D-A29I-10	TCGA-OR-A5LA-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	88fcb98e-87f0-400d-a518-d71acd4d4f15	dbf1a7bc-94a6-4ca2-af78-a3649deac3ed	.	TELO2-90	NM_016111	exon5	c.T798C	p.A266A	GGAGGCTGTGCTG	.	80	28	21	0	T|0.754;C|0.246	9	5	4	0	0	C	1547477	T	C	1547477	2	2	48	1	0	0	0	0	0	0	0	1	15794	1567	55	4		4	TELO2	16	1547477	Silent	SNP	T	TCGA-OR-A5LA-01A-11D-A29I-10	949972	1547477	88807276	47	9683										
CCDC102A	92922	hgsc.bcm.edu	37	chr16	57562804	57562804	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0147058823529412	1	1	0.494594594594595	0	0.54954954954955	1	1	0	ggcagtgcagtccgaccaccGgcgcatggtcttctccatct	11	15	3	0	rs12935069		TCGA-OR-A5LA-01A-11D-A29I-10	TCGA-OR-A5LA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	88fcb98e-87f0-400d-a518-d71acd4d4f15	dbf1a7bc-94a6-4ca2-af78-a3649deac3ed	.	CCDC102A-91	NM_033212	exon2	c.C286T	p.R96W	ACCACCGGCGCAT	.	6	6	0	0	G|0.001;A|0.999	1	0	1	0	0	A	57562804	G	A	57562804	3	1	48	1	0	0	0	0	1	0	0	0	2742	1115	39	1	1398	1	CCDC102A	16	57562804	Missense_Mutation	SNP	G	TCGA-OR-A5LA-01A-11D-A29I-10	56015327	57562804	32791949	48	9684										
ZFPM1	161882	hgsc.bcm.edu	37	chr16	88599697	88599705	+	In_Frame_Del	DEL	AGCCTCTGG	AGCCTCTGG	-													0.0147058823529412	1	1	0.494594594594595	0	0.54954954954955	1	1	0	caacggagaggccagagcggAgcctctggcccagaatggag					novel		TCGA-OR-A5LA-01A-11D-A29I-10	TCGA-OR-A5LA-10A-01D-A29L-10	AGCCTCTGG	AGCCTCTGG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	88fcb98e-87f0-400d-a518-d71acd4d4f15	dbf1a7bc-94a6-4ca2-af78-a3649deac3ed	.	ZFPM1-90	NM_153813	exon10	c.1331_1339del	p.444_447del	GAGCGGAGCCTCT	.	12	0	0	0	.	0	0	0	0	0	-	88599705	AGCCTCTGG	-	88599697	7	5	48	1	0	1	0	1	0	0	0	0	17694	304	11	0	1369	0	ZFPM1	16	88599697	In_Frame_Del	DEL	AGCCTCTGG	TCGA-OR-A5LA-01A-11D-A29I-10	31036893	88599697	1755056	49	9685										
ALOX12	239	broad.mit.edu	37	chr17	6903656	6903656	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0147058823529412	1	1	0.494594594594595	0	0.54954954954955	1	1	0	acatccctcctgtccccagaAtggttccctgtttgaagctg	8	14	0	2	novel		TCGA-OR-A5LA-01A-11D-A29I-10	TCGA-OR-A5LA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	88fcb98e-87f0-400d-a518-d71acd4d4f15	dbf1a7bc-94a6-4ca2-af78-a3649deac3ed	.	ALOX12-226	NM_000697	exon7	c.A809G	p.N270S	CCCAGAATGGTTC	.	89	5	103	0	.	0	0	0	0	0	G	6903656	A	G	6903656	3	3	48	1	0	0	0	0	1	0	0	0	536	115	4	4	835	4	ALOX12	17	6903656	Missense_Mutation	SNP	A	TCGA-OR-A5LA-01A-11D-A29I-10		6903656	74291554	50	9686										
DVL2	1856	ucsc.edu;bcgsc.ca	37	chr17	7129840	7129840	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0147058823529412	1	1	0.494594594594595	0	0.54954954954955	1	1	0	taggggtgtggggcagggtaTtggtaggagaaagtgggcag	22	2	0	1	rs35594616	byfrequency	TCGA-OR-A5LA-01A-11D-A29I-10	TCGA-OR-A5LA-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	88fcb98e-87f0-400d-a518-d71acd4d4f15	dbf1a7bc-94a6-4ca2-af78-a3649deac3ed	.	DVL2-659	NM_004422	exon14	c.A1662G	p.Q554Q	AGGGTATTGGTAG	.	30	4	41	0	T|0.450;C|0.550	8	8	0	0	0	C	7129840	T	C	7129840	2	2	48	1	0	0	0	0	0	0	0	1	4847	1490	52	4		4	DVL2	17	7129840	Silent	SNP	T	TCGA-OR-A5LA-01A-11D-A29I-10	226184	7129840	74065370	51	9687										
NF1	4763	hgsc.bcm.edu	37	chr17	29676201	29676202	+	Frame_Shift_Del	DEL	CT	CT	-													0.0147058823529412	1	1	0.494594594594595	0	0.54954954954955	1	1	0	aattttacatacactactaaCtctggttaacaaacacagaa					novel		TCGA-OR-A5LA-01A-11D-A29I-10	TCGA-OR-A5LA-10A-01D-A29L-10	CT	CT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	88fcb98e-87f0-400d-a518-d71acd4d4f15	dbf1a7bc-94a6-4ca2-af78-a3649deac3ed	.	NF1-3353	NM_001042492	exon49	c.7253_7254del	p.2418_2418del	TACTAACTCTGGT	.	43	24	76	2	.	0	0	0	0	0	-	29676202	CT	-	29676201	7	5	48	1	0	1	0	1	0	0	0	0	10385	565	20	0	7508	0	NF1	17	29676201	Frame_Shift_Del	DEL	CT	TCGA-OR-A5LA-01A-11D-A29I-10	22546361	29676201	51519009	52	9688										
EPX	8288	broad.mit.edu	37	chr17	56274588	56274588	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0147058823529412	1	1	0.494594594594595	0	0.54954954954955	1	1	0	acccctgtctcctcaccaacCgctcggcgcgcatcccctgc	7	22	2	0	novel		TCGA-OR-A5LA-01A-11D-A29I-10	TCGA-OR-A5LA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	88fcb98e-87f0-400d-a518-d71acd4d4f15	dbf1a7bc-94a6-4ca2-af78-a3649deac3ed	.	EPX-92	NM_000502	exon7	c.C1090T	p.R364C	ACCAACCGCTCGG	.	40	3	49	1	.	0	0	0	0	0	T	56274588	C	T	56274588	3	4	48	1	0	0	0	0	1	0	0	0	5213	652	23	1	1116	1	EPX	17	56274588	Missense_Mutation	SNP	C	TCGA-OR-A5LA-01A-11D-A29I-10	26598387	56274588	24920622	53	9689										
RAX	30062	hgsc.bcm.edu	37	chr18	56936395	56936395	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0147058823529412	1	1	0.494594594594595	0	0.54954954954955	1	1	0	ggcggcggcggcgcgagaggTtgcaggccggggcccaacgg	22	12	0	1	rs7226481		TCGA-OR-A5LA-01A-11D-A29I-10	TCGA-OR-A5LA-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	88fcb98e-87f0-400d-a518-d71acd4d4f15	dbf1a7bc-94a6-4ca2-af78-a3649deac3ed	.	RAX-90	NM_013435	exon3	c.A882G	p.Q294Q	GAGAGGTTGCAGG	.	8	7	1	0	T|0.767;C|0.233	0	0	0	0	0	C	56936395	T	C	56936395	2	2	48	1	0	0	0	0	0	0	0	1	13131	1722	60	4		4	RAX	18	56936395	Silent	SNP	T	TCGA-OR-A5LA-01A-11D-A29I-10		56936395	21140853	54	9690										
GRIN3B	116444	hgsc.bcm.edu	37	chr19	1003292	1003292	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0147058823529412	1	1	0.494594594594595	0	0.54954954954955	1	1	0	ctggacaagccgggctggccGgcccccacagctggtcctgg	15	16	0	0	rs149087926		TCGA-OR-A5LA-01A-11D-A29I-10	TCGA-OR-A5LA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	88fcb98e-87f0-400d-a518-d71acd4d4f15	dbf1a7bc-94a6-4ca2-af78-a3649deac3ed	.	GRIN3B-90	NM_138690	exon2	c.G590A	p.R197Q	CTGGCCGGCCCCC	.	22	7	0	0	G|0.997;A|0.003	0	0	0	0	0	A	1003292	G	A	1003292	3	1	48	1	0	0	0	0	1	0	0	0	6805	1116	39	1	596	1	GRIN3B	19	1003292	Missense_Mutation	SNP	G	TCGA-OR-A5LA-01A-11D-A29I-10		1003292	58125691	55	9691										
ZNRF4	148066	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr19	5456615	5456615	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0147058823529412	1	1	0.494594594594595	0	0.54954954954955	1	1	0	accacctacagcttcagggaCgaggacccctccctaccggg	10	17	1	0	novel		TCGA-OR-A5LA-01A-11D-A29I-10	TCGA-OR-A5LA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	88fcb98e-87f0-400d-a518-d71acd4d4f15	dbf1a7bc-94a6-4ca2-af78-a3649deac3ed	.	ZNRF4-135	NM_181710	exon1	c.C1113T	p.D371D	CAGGGACGAGGAC	.	64	4	53	0	.	0	0	0	0	0	T	5456615	C	T	5456615	2	4	48	1	0	0	0	0	0	0	0	1	18251	535	19	1		1	ZNRF4	19	5456615	Silent	SNP	C	TCGA-OR-A5LA-01A-11D-A29I-10	4453323	5456615	53672368	56	9692										
MUC16	94025	bcgsc.ca	37	chr19	9068397	9068397	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0147058823529412	1	1	0.494594594594595	0	0.54954954954955	1	1	0	caatctttttcatcgcagagGatctaggcattgatgtggaa	10	7	3	2	novel		TCGA-OR-A5LA-01A-11D-A29I-10	TCGA-OR-A5LA-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	88fcb98e-87f0-400d-a518-d71acd4d4f15	dbf1a7bc-94a6-4ca2-af78-a3649deac3ed	.	MUC16-566	NM_024690	exon3	c.C19049A	p.S6350Y	GCAGAGGATCTAG	.	54	4	52	0	.	0	0	0	0	0	T	9068397	G	T	9068397	3	4	48	1	0	0	0	0	1	0	0	0	10001	1174	41	3	24802	3	MUC16	19	9068397	Missense_Mutation	SNP	G	TCGA-OR-A5LA-01A-11D-A29I-10	3611782	9068397	50060586	57	9693										
RGS9BP	388531	hgsc.bcm.edu	37	chr19	33167455	33167455	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0147058823529412	1	1	0.494594594594595	0	0.54954954954955	1	1	0	tggaagcggacatgcgacgcGcgctggagctgggcgccgcg	19	12	0	0	rs259290	byfrequency	TCGA-OR-A5LA-01A-11D-A29I-10	TCGA-OR-A5LA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	88fcb98e-87f0-400d-a518-d71acd4d4f15	dbf1a7bc-94a6-4ca2-af78-a3649deac3ed	.	RGS9BP-90	NM_207391	exon1	c.G286T	p.A96S	CGACGCGCGCTGG	.	4	4	0	0	G|0.540;T|0.460	0	0	0	0	0	T	33167455	G	T	33167455	3	4	48	1	0	0	0	0	1	0	0	0	13349	1087	38	2	288	2	RGS9BP	19	33167455	Missense_Mutation	SNP	G	TCGA-OR-A5LA-01A-11D-A29I-10	24099058	33167455	25961528	58	9694										
GEMIN7	79760	broad.mit.edu	37	chr19	45593754	45593754	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0147058823529412	1	1	0.494594594594595	0	0.54954954954955	1	1	0	gtagtgacattatttcatatAccttcaagccataaagatat	5	7	2	2	novel		TCGA-OR-A5LA-01A-11D-A29I-10	TCGA-OR-A5LA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	88fcb98e-87f0-400d-a518-d71acd4d4f15	dbf1a7bc-94a6-4ca2-af78-a3649deac3ed	.	GEMIN7-91	NM_024707	exon3	c.A382C	p.T128P	TCATATACCTTCA	.	122	29	124	21	.	10	10	0	0	0	C	45593754	A	C	45593754	3	2	48	1	0	0	0	0	1	0	0	0	6353	391	14	5	384	5	GEMIN7	19	45593754	Missense_Mutation	SNP	A	TCGA-OR-A5LA-01A-11D-A29I-10	12426299	45593754	13535229	59	9695										
BCL2L1	598	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr20	30309831	30309831	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0147058823529412	1	1	0.494594594594595	0	0.54954954954955	1	1	0	ggccagtggctccattcaccGcggggctgtctgccaggtgc	15	14	2	0	novel		TCGA-OR-A5LA-01A-11D-A29I-10	TCGA-OR-A5LA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	88fcb98e-87f0-400d-a518-d71acd4d4f15	dbf1a7bc-94a6-4ca2-af78-a3649deac3ed	.	BCL2L1-1084	NM_138578	exon2	c.C191T	p.A64V	TTCACCGCGGGGC	.	95	38	70	0	.	3	1	2	0	0	A	30309831	G	A	30309831	3	1	48	1	0	0	0	0	1	0	0	0	1368	1087	38	1	518	1	BCL2L1	20	30309831	Missense_Mutation	SNP	G	TCGA-OR-A5LA-01A-11D-A29I-10		30309831	32715689	60	9696										
BAGE2	85319	bcgsc.ca	37	chr21	11058322	11058322	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0147058823529412	1	1	0.494594594594595	0	0.54954954954955	1	1	0	agtgcttacaaaatgcacatCgctgaaaggggtaaaggaga	12	6	0	2	rs2951027	byfrequency	TCGA-OR-A5LA-01A-11D-A29I-10	TCGA-OR-A5LA-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	88fcb98e-87f0-400d-a518-d71acd4d4f15	dbf1a7bc-94a6-4ca2-af78-a3649deac3ed	.	.	NM_182482	exon3	c.G118A	p.D40N	GCACATCGCTGAA	.	235	14	250	4	C|0.750;T|0.250	0	0	0	0	0	T	11058322	C	T	11058322	3	4	48	1	0	0	0	0	1	0	0	0	1293	898	31	1	219	1	BAGE2	21	11058322	Missense_Mutation	SNP	C	TCGA-OR-A5LA-01A-11D-A29I-10		11058322	37071573	61	9697										
TMPRSS2	7113	bcgsc.ca	37	chr21	42845383	42845383	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0147058823529412	1	1	0.494594594594595	0	0.54954954954955	1	1	0	agcgcgctctcgccgcccacAatcctgctctggcggcttga	11	17	2	1	rs17854725	byfrequency	TCGA-OR-A5LA-01A-11D-A29I-10	TCGA-OR-A5LA-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	88fcb98e-87f0-400d-a518-d71acd4d4f15	dbf1a7bc-94a6-4ca2-af78-a3649deac3ed	.	TMPRSS2-5208	NM_001135099	exon9	c.T879C	p.I293I	GCCCACAATCCTG	.	245	8	107	0	A|0.555;G|0.445	0	0	0	0	0	G	42845383	A	G	42845383	2	3	48	1	0	0	0	0	0	0	0	1	16284	126	5	4		4	TMPRSS2	21	42845383	Silent	SNP	A	TCGA-OR-A5LA-01A-11D-A29I-10	31787061	42845383	5284512	62	9698										
KRTAP10-1	386677	bcgsc.ca	37	chr21	45959559	45959559	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0147058823529412	1	1	0.494594594594595	0	0.54954954954955	1	1	0	ctggcagcatgaagaggaatCctcagagcaggtgggcacat	14	9	1	3	rs62218859	byfrequency	TCGA-OR-A5LA-01A-11D-A29I-10	TCGA-OR-A5LA-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	88fcb98e-87f0-400d-a518-d71acd4d4f15	dbf1a7bc-94a6-4ca2-af78-a3649deac3ed	.	KRTAP10-1-91	NM_198691	exon1	c.G475T	p.D159Y	AGGAATCCTCAGA	.	546	16	456	5	C|0.434;A|0.566	0	0	0	0	0	A	45959559	C	A	45959559	3	1	48	1	0	0	0	0	1	0	0	0	8526	855	30	3	377	3	KRTAP10-1	21	45959559	Missense_Mutation	SNP	C	TCGA-OR-A5LA-01A-11D-A29I-10	3114176	45959559	2170336	63	9699										
SH3BP1	23616	bcgsc.ca	37	chr22	38046718	38046718	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0147058823529412	1	1	0.494594594594595	0	0.54954954954955	1	1	0	gccccagccttggcttcagcAgctaccaaggaaaggtgagg	13	12	1	1	rs762987	byfrequency	TCGA-OR-A5LA-01A-11D-A29I-10	TCGA-OR-A5LA-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	88fcb98e-87f0-400d-a518-d71acd4d4f15	dbf1a7bc-94a6-4ca2-af78-a3649deac3ed	.	SH3BP1-90	NM_018957	exon16	c.A1584G	p.A528A	TTCAGCAGCTACC	.	122	5	98	0	A|0.859;G|0.141	0	0	0	0	0	G	38046718	A	G	38046718	2	3	48	1	0	0	0	0	0	0	0	1	14279	175	7	4		4	SH3BP1	22	38046718	Silent	SNP	A	TCGA-OR-A5LA-01A-11D-A29I-10		38046718	13257848	64	9700										
TRIOBP	11078	hgsc.bcm.edu	37	chr22	38122462	38122462	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0147058823529412	1	1	0.494594594594595	0	0.54954954954955	1	1	0	cagcagcgggggccgcacccAcagccctggccgtgcagagg	16	16	0	1	rs739138	byfrequency	TCGA-OR-A5LA-01A-11D-A29I-10	TCGA-OR-A5LA-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	88fcb98e-87f0-400d-a518-d71acd4d4f15	dbf1a7bc-94a6-4ca2-af78-a3649deac3ed	.	TRIOBP-136	NM_001039141	exon7	c.A3899G	p.H1300R	GCACCCACAGCCC	.	12	12	0	0	A|0.354;G|0.646	0	0	0	0	0	G	38122462	A	G	38122462	3	3	48	1	0	0	0	0	1	0	0	0	16591	159	6	4	3917	4	TRIOBP	22	38122462	Missense_Mutation	SNP	A	TCGA-OR-A5LA-01A-11D-A29I-10	75744	38122462	13182104	65	9701										
TLR7	51284	bcgsc.ca	37	chrX	12903659	12903659	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0147058823529412	1	1	0.494594594594595	0	0.54954954954955	1	1	0	aatgtggacactgaagagacAaattcttatcctttttaaca	6	7	1	2	rs179008	bycluster;byfrequency;by1000genomes	TCGA-OR-A5LA-01A-11D-A29I-10	TCGA-OR-A5LA-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	88fcb98e-87f0-400d-a518-d71acd4d4f15	dbf1a7bc-94a6-4ca2-af78-a3649deac3ed	.	TLR7-564	NM_016562	exon3	c.A32T	p.Q11L	AGAGACAAATTCT	.	116	6	126	0	0|0.021;A|0.822;T|0.157	0	0	0	0	0	T	12903659	A	T	12903659	3	4	48	1	0	0	0	0	1	0	0	0	15993	130	5	5	38	5	TLR7	23	12903659	Missense_Mutation	SNP	A	TCGA-OR-A5LA-01A-11D-A29I-10		12903659	142366901	66	9702										
MAGT1	84061	hgsc.bcm.edu	37	chrX	77111010	77111010	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0147058823529412	1	1	0.494594594594595	0	0.54954954954955	1	1	0	tcccttaccacatgtcccgtGtggggattcttatgggcata	10	11	1	0	novel		TCGA-OR-A5LA-01A-11D-A29I-10	TCGA-OR-A5LA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	88fcb98e-87f0-400d-a518-d71acd4d4f15	dbf1a7bc-94a6-4ca2-af78-a3649deac3ed	.	MAGT1-63	NM_032121	exon6	c.C846A	p.H282Q	TCCCGTGTGGGGA	.	72	4	94	0	.	0	0	0	0	0	T	77111010	G	T	77111010	3	4	48	1	0	0	0	0	1	0	0	0	9224	1368	48	3	277	3	MAGT1	23	77111010	Missense_Mutation	SNP	G	TCGA-OR-A5LA-01A-11D-A29I-10	64207351	77111010	78159550	67	9703										
PLXNA3	55558	bcgsc.ca	37	chrX	153694334	153694334	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0147058823529412	1	1	0.494594594594595	0	0.54954954954955	1	1	0	cgggtcaccatcgtgggtgaCaacctgggcctcttgtcccg	13	14	2	1	rs5945430	byfrequency	TCGA-OR-A5LA-01A-11D-A29I-10	TCGA-OR-A5LA-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	88fcb98e-87f0-400d-a518-d71acd4d4f15	dbf1a7bc-94a6-4ca2-af78-a3649deac3ed	.	PLXNA3-132	NM_017514	exon14	c.C2589G	p.D863E	GGGTGACAACCTG	.	268	7	321	2	C|0.625;G|0.375	2	2	0	0	0	G	153694334	C	G	153694334	3	3	48	1	0	0	0	0	1	0	0	0	12150	477	17	3	2639	3	PLXNA3	23	153694334	Missense_Mutation	SNP	C	TCGA-OR-A5LA-01A-11D-A29I-10	76583324	153694334	1576226	68	9704										
MORN1	79906	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	2316501	2316501	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	tcgccgtcgtacttgtcaccGttcctgggggacacacgcac	11	15	1	0	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	MORN1-92	NM_024848	exon6	c.C453T	p.N151N	GTCACCGTTCCTG	.	69	29	32	0	.	0	0	0	0	0	A	2316501	G	A	2316501	2	1	49	1	0	0	0	0	0	0	0	1	9736	1136	40	1		1	MORN1	1	2316501	Silent	SNP	G	TCGA-OR-A5LB-01A-11D-A29I-10		2316501	246934120	1	9705										
RPL22	6146	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	6246838	6246840	+	In_Frame_Del	DEL	TTC	TTC	-													0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	gcaaccagtcacgtagattaTtcttcttcaaatattttttg					novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	TTC	TTC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	RPL22-650	NM_000983	exon4	c.279_281del	p.93_94del	AGATTATTCTTCT	.	297	191	323	0	.	0	0	0	0	0	-	6246840	TTC	-	6246838	7	5	49	1	0	1	0	1	0	0	0	0	13603	1493	52	0	109	0	RPL22	1	6246838	In_Frame_Del	DEL	TTC	TCGA-OR-A5LB-01A-11D-A29I-10	3930337	6246838	243003783	2	9706										
DFFA	1676	broad.mit.edu	37	chr1	10521671	10521671	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	gcaggcgcagggcgagctccCgctcacaggcctcctgaaca	13	16	1	1	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	DFFA-90	NM_004401	exon6	c.G872A	p.R291Q	AGCTCCCGCTCAC	.	320	6	308	0	.	9	9	0	0	0	T	10521671	C	T	10521671	3	4	49	1	0	0	0	0	1	0	0	0	4463	652	23	1	127	1	DFFA	1	10521671	Missense_Mutation	SNP	C	TCGA-OR-A5LB-01A-11D-A29I-10	4274833	10521671	238728950	3	9707										
ZBTB40	9923	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	22852723	22852723	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	aaccccagagccggtggcccCgacagagcaggtgatcactt	12	14	1	3	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	ZBTB40-91	NM_001083621	exon19	c.C3554T	p.P1185L	TGGCCCCGACAGA	.	136	125	115	1	.	0	0	0	0	0	T	22852723	C	T	22852723	3	4	49	1	0	0	0	0	1	0	0	0	17579	652	23	1	3620	1	ZBTB40	1	22852723	Missense_Mutation	SNP	C	TCGA-OR-A5LB-01A-11D-A29I-10	12331052	22852723	226397898	4	9708										
HPCAL4	51440	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	40148354	40148354	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	acgctgctggggcgtgagccCgtcctggttcatgcgcatca	14	13	2	1	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	HPCAL4-90	NM_016257	exon4	c.G430A	p.G144R	TGAGCCCGTCCTG	.	235	217	210	0	.	0	0	0	0	0	T	40148354	C	T	40148354	3	4	49	1	0	0	0	0	1	0	0	0	7352	652	23	1	149	1	HPCAL4	1	40148354	Missense_Mutation	SNP	C	TCGA-OR-A5LB-01A-11D-A29I-10	17295631	40148354	209102267	5	9709										
TRIT1	54802	bcgsc.ca	37	chr1	40309802	40309802	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	cgcgatccccaatgatgattCgatcacagaggtcacacagg	10	12	2	3	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	TRIT1-91	NM_017646	exon10	c.G1205A	p.R402Q	ATGATTCGATCAC	.	92	84	81	3	.	7	0	7	0	0	T	40309802	C	T	40309802	3	4	49	1	0	0	0	0	1	0	0	0	16598	884	31	1	206	1	TRIT1	1	40309802	Missense_Mutation	SNP	C	TCGA-OR-A5LB-01A-11D-A29I-10	161448	40309802	208940819	6	9710										
CYP4A22	284541	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	47610627	47610627	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	ccgtcaccttccctgatgggCgctccttgcccaaaggtatg	10	15	1	1	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	CYP4A22-139	NM_001010969	exon9	c.C1207G	p.R403G	GATGGGCGCTCCT	.	194	173	206	1	.	0	0	0	0	0	G	47610627	C	G	47610627	3	3	49	1	0	0	0	0	1	0	0	0	4190	768	27	2	1241	2	CYP4A22	1	47610627	Missense_Mutation	SNP	C	TCGA-OR-A5LB-01A-11D-A29I-10	7300825	47610627	201639994	7	9711										
RPF1	80135	broad.mit.edu;bcgsc.ca	37	chr1	84945010	84945010	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	gcagcagcgggaagaaaagtCtaaaacggaaagccgctgcc	13	10	1	1	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	RPF1-90	NM_025065	exon1	c.C46G	p.L16V	AAAAGTCTAAAAC	.	129	7	111	1	.	15	15	0	0	0	G	84945010	C	G	84945010	3	3	49	1	0	0	0	0	1	0	0	0	13581	912	32	3	48	3	RPF1	1	84945010	Missense_Mutation	SNP	C	TCGA-OR-A5LB-01A-11D-A29I-10	37334383	84945010	164305611	8	9712										
ZNF326	284695	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	90487883	90487883	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	aataatccaatagtgaaggcGcgatatgaacgttttgttaa	9	5	0	2	rs146247512	byfrequency	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	ZNF326-91	NM_182976	exon11	c.G1380A	p.A460A	GAAGGCGCGATAT	.	170	152	197	0	G|0.999;A|0.001	24	0	24	0	0	A	90487883	G	A	90487883	2	1	49	1	0	0	0	0	0	0	0	1	17883	1074	38	1		1	ZNF326	1	90487883	Silent	SNP	G	TCGA-OR-A5LB-01A-11D-A29I-10	5542873	90487883	158762738	9	9713										
KCNC4	3749	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	110766300	110766300	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	tggctggcgtgctcaccatcGccatgccggtgcctgtcatc	12	15	2	0	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	KCNC4-154	NM_001039574	exon2	c.G1393A	p.A465T	ACCATCGCCATGC	.	165	42	155	1	.	0	0	0	0	0	A	110766300	G	A	110766300	3	1	49	1	0	0	0	0	1	0	0	0	8038	1087	38	1	1399	1	KCNC4	1	110766300	Missense_Mutation	SNP	G	TCGA-OR-A5LB-01A-11D-A29I-10	20278417	110766300	138484321	10	9714										
KCNA3	3738	broad.mit.edu	37	chr1	111216774	111216774	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	gtactcgaagagcagccacaCctggcgctggaagtcgcggc	14	13	0	1	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	KCNA3-95	NM_002232	exon1	c.G658A	p.V220M	GCCACACCTGGCG	.	81	4	57	0	.	0	0	0	0	0	T	111216774	C	T	111216774	3	4	49	1	0	0	0	0	1	0	0	0	8025	507	18	3	1073	3	KCNA3	1	111216774	Missense_Mutation	SNP	C	TCGA-OR-A5LB-01A-11D-A29I-10	450474	111216774	138033847	11	9715										
IGSF3	3321	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	117131615	117131615	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	tgtggacataccagagcaccGcaaagtgggagttctggcta	13	9	1	1	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	IGSF3-92	NM_001542	exon9	c.C2201T	p.A734V	AGCACCGCAAAGT	.	236	218	221	1	.	4	0	4	0	0	A	117131615	G	A	117131615	3	1	49	1	0	0	0	0	1	0	0	0	7622	1087	38	1	1459	1	IGSF3	1	117131615	Missense_Mutation	SNP	G	TCGA-OR-A5LB-01A-11D-A29I-10	5914841	117131615	132119006	12	9716										
BOLA1	51027	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	149871945	149871945	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	gccatccaggcacggaccccCgcccagtggagagagaactc	12	16	0	2	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	BOLA1-69	NM_016074	exon2	c.C333T	p.P111P	GACCCCCGCCCAG	.	117	105	64	1	.	15	0	15	0	0	T	149871945	C	T	149871945	2	4	49	1	0	0	0	0	0	0	0	1	1486	639	23	1		1	BOLA1	1	149871945	Silent	SNP	C	TCGA-OR-A5LB-01A-11D-A29I-10	32740330	149871945	99378676	13	9717										
FLG	2312	broad.mit.edu;bcgsc.ca	37	chr1	152286313	152286313	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	ctgattgtctggagctgtctGcagagtgcccatgactggct	13	10	2	3	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	FLG-106	NM_002016	exon3	c.C1049T	p.A350V	CTGTCTGCAGAGT	.	371	11	280	0	.	0	0	0	0	0	A	152286313	G	A	152286313	3	1	49	1	0	0	0	0	1	0	0	0	5941	1319	46	3	11140	3	FLG	1	152286313	Missense_Mutation	SNP	G	TCGA-OR-A5LB-01A-11D-A29I-10	2414368	152286313	96964308	14	9718										
SPRR2G	6706	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	153122484	153122484	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	acaaggaggaggcaggtaagGctcagggcacttcgggggtg	19	7	1	0	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	SPRR2G-68	NM_001014291	exon2	c.C103A	p.P35T	GGTAAGGCTCAGG	.	76	68	73	0	.	0	0	0	0	0	T	153122484	G	T	153122484	3	4	49	1	0	0	0	0	1	0	0	0	15139	1203	42	3	122	3	SPRR2G	1	153122484	Missense_Mutation	SNP	G	TCGA-OR-A5LB-01A-11D-A29I-10	836171	153122484	96128137	15	9719										
PBXIP1	57326	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	154917581	154917583	+	In_Frame_Del	DEL	CTT	CTT	-													0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	gggctctgtgagtgcttgtcCttcttccctgacctgtgggg					novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	CTT	CTT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	PBXIP1-153	NM_020524	exon11	c.2113_2115del	p.705_705del	CTTGTCCTTCTTC	.	90	62	81	0	.	0	0	0	0	0	-	154917583	CTT	-	154917581	7	5	49	1	0	1	0	1	0	0	0	0	11525	680	24	0	84	0	PBXIP1	1	154917581	In_Frame_Del	DEL	CTT	TCGA-OR-A5LB-01A-11D-A29I-10	1795097	154917581	94333040	16	9720										
IQGAP3	128239	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	156498355	156498355	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	cacccttttccaggagctgaGcagcagtgtaatgaagagaa	11	9	0	3	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	IQGAP3-96	NM_178229	exon36	c.C4619T	p.A1540V	AGCTGAGCAGCAG	.	60	51	64	0	.	1	0	1	0	0	A	156498355	G	A	156498355	3	1	49	1	0	0	0	0	1	0	0	0	7837	971	34	3	288	3	IQGAP3	1	156498355	Missense_Mutation	SNP	G	TCGA-OR-A5LB-01A-11D-A29I-10	1580774	156498355	92752266	17	9721										
KLHDC9	126823	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	161068381	161068382	+	Frame_Shift_Del	DEL	CA	CA	-													0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	ctcaggctgggcctggaggcCagtggcgcgggacgcgcttt					novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	CA	CA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	KLHDC9-22	NM_152366	exon1	c.56_57del	p.19_19del	GGAGGCCAGTGGC	.	131	113	72	0	.	0	0	0	0	0	-	161068382	CA	-	161068381	7	5	49	1	0	1	0	1	0	0	0	0	8385	594	21	0	58	0	KLHDC9	1	161068381	Frame_Shift_Del	DEL	CA	TCGA-OR-A5LB-01A-11D-A29I-10	4570026	161068381	88182240	18	9722										
TNR	7143	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	175372700	175372700	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	ttgcagatgcagccacaggaCtcaaagctaaagttgccgtg	11	10	1	1	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	TNR-324	NM_003285	exon4	c.G552A	p.E184E	ACAGGACTCAAAG	.	190	162	161	2	.	0	0	0	0	0	T	175372700	C	T	175372700	2	4	49	1	0	0	0	0	0	0	0	1	16375	564	20	3		3	TNR	1	175372700	Silent	SNP	C	TCGA-OR-A5LB-01A-11D-A29I-10	14304319	175372700	73877921	19	9723										
TDRD5	163589	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	179621206	179621206	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	ctcaaccctttagctttataCacgacatccagtggagggcc	8	13	1	0	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	TDRD5-94	NM_001199091	exon13	c.C2034T	p.Y678Y	TTTATACACGACA	.	143	127	135	0	.	1	0	1	0	0	T	179621206	C	T	179621206	2	4	49	1	0	0	0	0	0	0	0	1	15770	489	17	3		3	TDRD5	1	179621206	Silent	SNP	C	TCGA-OR-A5LB-01A-11D-A29I-10	4248506	179621206	69629415	20	9724										
CFH	3075	broad.mit.edu;bcgsc.ca	37	chr1	196659363	196659363	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	ctcctactcccagatgcatcCgtgtcagtaagtacactact	6	14	1	1	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	CFH-566	NM_001014975	exon9	c.C1330T	p.R444C	TGCATCCGTGTCA	.	464	22	417	1	.	0	0	0	0	0	T	196659363	C	T	196659363	3	4	49	1	0	0	0	0	1	0	0	0	3289	652	23	1	1364	1	CFH	1	196659363	Missense_Mutation	SNP	C	TCGA-OR-A5LB-01A-11D-A29I-10	17038157	196659363	52591258	21	9725										
F13B	2165	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	197031011	197031011	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	gtggttttgtaccctgaagcGcaaccataacgcatgttctc	9	11	1	1	rs142562955		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	F13B-92	NM_001994	exon3	c.C354T	p.C118C	TGAAGCGCAACCA	.	108	94	89	0	G|1.000;A|0.000	0	0	0	0	0	A	197031011	G	A	197031011	2	1	49	1	0	0	0	0	0	0	0	1	5354	1079	38	1		1	F13B	1	197031011	Silent	SNP	G	TCGA-OR-A5LB-01A-11D-A29I-10	371648	197031011	52219610	22	9726										
NUAK2	81788	ucsc.edu;bcgsc.ca	37	chr1	205273536	205273536	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	gagcctcctgctctcccactCgggtggcgtagccccagttg	12	16	1	0	rs200627742		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	NUAK2-391	NM_030952	exon7	c.G929A	p.R310Q	CCCACTCGGGTGG	.	212	191	178	3	.	3	0	3	0	0	T	205273536	C	T	205273536	3	4	49	1	0	0	0	0	1	0	0	0	10742	884	31	1	961	1	NUAK2	1	205273536	Missense_Mutation	SNP	C	TCGA-OR-A5LB-01A-11D-A29I-10	8242525	205273536	43977085	23	9727										
SLC41A1	254428	broad.mit.edu;bcgsc.ca	37	chr1	205760791	205760791	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	agaagttgtccgggtccaggCcccggccccacatccagtgc	12	16	0	1	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	SLC41A1-92	NM_173854	exon11	c.G1412A	p.G471D	TCCAGGCCCCGGC	.	248	8	229	0	.	7	7	0	0	0	T	205760791	C	T	205760791	3	4	49	1	0	0	0	0	1	0	0	0	14664	739	26	3	133	3	SLC41A1	1	205760791	Missense_Mutation	SNP	C	TCGA-OR-A5LB-01A-11D-A29I-10	487255	205760791	43489830	24	9728										
MIA3	375056	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	222803533	222803534	+	Frame_Shift_Ins	INS	-	-	A													0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	acaaattctgagcatagcagINSaaaaaatgcttgatactcgt					novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	MIA3-98	NM_198551	exon4	c.2971_2972insA	p.E991fs	ATAGCAGAAAAAA	.	119	96	141	0	.	0	0	0	0	0	A	222803534	-	A	222803533	7	5	49	1	0	1	1	0	0	0	0	0	9593	943	33	0	2985	0	MIA3	1	222803533	Frame_Shift_Ins	INS	-	TCGA-OR-A5LB-01A-11D-A29I-10	17042742	222803533	26447088	25	9729										
PCNXL2	80003	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	233135059	233135059	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	actgccgcgctccggattgcGgttgcgaagaaatataagct	12	10	0	1	rs201746355		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	PCNXL2-91	NM_014801	exon31	c.C5395T	p.R1799C	GATTGCGGTTGCG	.	98	35	113	0	.	5	2	3	0	0	A	233135059	G	A	233135059	3	1	49	1	0	0	0	0	1	0	0	0	11621	1116	39	1	1034	1	PCNXL2	1	233135059	Missense_Mutation	SNP	G	TCGA-OR-A5LB-01A-11D-A29I-10	10331526	233135059	16115562	26	9730										
TAF1B	9014	hgsc.bcm.edu;bcgsc.ca	37	chr2	10059788	10059788	+	Frame_Shift_Del	DEL	A	A	-													0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	gagtcaacagcaactgctggAaaaaaaagcccttcaagttt					novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	TAF1B-92	NM_005680	exon14	c.1404delA	p.G468fs	TGCTGGAAAAAAA	.	164	33	141	1	.	0	0	0	0	0	-	10059788	A	-	10059788	7	5	49	1	0	1	0	1	0	0	0	0	15557	233	9	0	1458	0	TAF1B	2	10059788	Frame_Shift_Del	DEL	A	TCGA-OR-A5LB-01A-11D-A29I-10		10059788	233139585	27	9731										
GRHL1	29841	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	10105471	10105471	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	atcgaggagattgcgtataaCgccatttccttcacatggga	10	9	1	1	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	GRHL1-92	NM_198182	exon8	c.C1071T	p.N357N	GTATAACGCCATT	.	73	67	74	0	.	0	0	0	0	0	T	10105471	C	T	10105471	2	4	49	1	0	0	0	0	0	0	0	1	6784	535	19	1		1	GRHL1	2	10105471	Silent	SNP	C	TCGA-OR-A5LB-01A-11D-A29I-10	45683	10105471	233093902	28	9732										
C1D	10438	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr2	68270087	68270088	+	Frame_Shift_Ins	INS	-	-	T													0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	attttggttcccagagggcaINSttttttacaaatcttgaagc					novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	C1D-186	NM_001190263	exon6	c.360_361insA	p.N120fs	GAGGGCATTTTTT	.	104	35	111	0	.	0	0	0	0	0	T	68270088	-	T	68270087	7	5	49	1	0	1	1	0	0	0	0	0	1957	214	8	0	69	0	C1D	2	68270087	Frame_Shift_Ins	INS	-	TCGA-OR-A5LB-01A-11D-A29I-10	58164616	68270087	174929286	29	9733										
SMYD5	10322	broad.mit.edu	37	chr2	73441441	73441442	+	Frame_Shift_Ins	INS	-	-	GG													0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	tccttctgcgtgggcgtggcINSgggccgcgcgcgggtctccg					novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	SMYD5-226	NM_006062	exon1	c.47_48insGG	p.A16fs	GCGTGGCGGGCCG	.	152	11	62	0	.	0	0	0	0	0	GG	73441442	-	GG	73441441	7	5	49	1	0	1	1	0	0	0	0	0	14860	768	27	0	49	0	SMYD5	2	73441441	Frame_Shift_Ins	INS	-	TCGA-OR-A5LB-01A-11D-A29I-10	5171354	73441441	169757932	30	9734										
LOXL3	84695	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	74779681	74779681	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	tcagggcccgtggaaggggaCggagaccccaagcacgaact	15	12	1	1	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	LOXL3-226	NM_032603	exon2	c.G81A	p.P27P	AGGGGACGGAGAC	.	175	16	142	0	.	0	0	0	0	0	T	74779681	C	T	74779681	2	4	49	1	0	0	0	0	0	0	0	1	8928	523	19	1		1	LOXL3	2	74779681	Silent	SNP	C	TCGA-OR-A5LB-01A-11D-A29I-10	1338240	74779681	168419692	31	9735										
HK2	3099	ucsc.edu;bcgsc.ca	37	chr2	75105940	75105940	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	cacacgctccgccagcctgtGcgcagccaccctggccgccg	11	21	0	0	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	HK2-252	NM_000189	exon9	c.G1157A	p.C386Y	GCCTGTGCGCAGC	.	346	133	142	2	.	0	0	0	0	0	A	75105940	G	A	75105940	3	1	49	1	0	0	0	0	1	0	0	0	7212	1319	46	3	1191	3	HK2	2	75105940	Missense_Mutation	SNP	G	TCGA-OR-A5LB-01A-11D-A29I-10	326259	75105940	168093433	32	9736										
CAPG	822	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	85628351	85628351	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	tcccagttcagtgcccgctcGgtggcacggatgttcttctt	11	13	3	0	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	CAPG-204	NM_001256140	exon5	c.C453T	p.T151T	CCGCTCGGTGGCA	.	183	161	195	0	.	5	5	0	0	0	A	85628351	G	A	85628351	2	1	49	1	0	0	0	0	0	0	0	1	2627	1103	39	1		1	CAPG	2	85628351	Silent	SNP	G	TCGA-OR-A5LB-01A-11D-A29I-10	10522411	85628351	157571022	33	9737										
CAPG	822	ucsc.edu;bcgsc.ca	37	chr2	85628769	85628769	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	ttgaggtgcacagccagcacGgcacaggccccctgctcatc	11	16	1	1	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	CAPG-204	NM_001256140	exon4	c.C234T	p.A78A	CAGCACGGCACAG	.	141	123	113	2	.	5	5	0	0	0	A	85628769	G	A	85628769	2	1	49	1	0	0	0	0	0	0	0	1	2627	1103	39	1		1	CAPG	2	85628769	Silent	SNP	G	TCGA-OR-A5LB-01A-11D-A29I-10	418	85628769	157570604	34	9738										
ZAP70	7535	broad.mit.edu	37	chr2	98354472	98354472	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	gagcagaagatgaaagggccGgaggtcatggccttcatcga	15	8	2	3	rs115143372	byfrequency	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	ZAP70-955	NM_001079	exon13	c.G1638A	p.P546P	AGGGCCGGAGGTC	.	194	4	223	0	G|0.999;A|0.001	0	0	0	0	0	A	98354472	G	A	98354472	2	1	49	1	0	0	0	0	0	0	0	1	17552	1103	39	1		1	ZAP70	2	98354472	Silent	SNP	G	TCGA-OR-A5LB-01A-11D-A29I-10	12725703	98354472	144844901	35	9739										
NPHP1	4867	broad.mit.edu;bcgsc.ca	37	chr2	110962528	110962528	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	agggcctggagaggatctcgCtgtcgtctcgccagcatctc	13	13	3	1	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	NPHP1-92	NM_207181	exon1	c.G18A	p.Q6Q	ATCTCGCTGTCGT	.	183	62	89	2	.	8	5	3	0	0	T	110962528	C	T	110962528	2	4	49	1	0	0	0	0	0	0	0	1	10608	796	28	3		3	NPHP1	2	110962528	Silent	SNP	C	TCGA-OR-A5LB-01A-11D-A29I-10	12608056	110962528	132236845	36	9740										
ERCC3	2071	hgsc.bcm.edu;bcgsc.ca	37	chr2	128046943	128046944	+	In_Frame_Ins	INS	-	-	TCT													0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	caaaagacactgtctgtgtcINStcttcttcttcttcttcatc					novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	ERCC3-723	NM_000122	exon6	c.792_793insAGA	p.E264delinsEE	CTGTGTCTCTTCT	.	305	196	248	0	.	0	0	0	0	0	TCT	128046944	-	TCT	128046943	7	5	49	1	0	1	1	0	0	0	0	0	5227	912	32	0	1596	0	ERCC3	2	128046943	In_Frame_Ins	INS	-	TCGA-OR-A5LB-01A-11D-A29I-10	17084415	128046943	115152430	37	9741										
PLA2R1	22925	bcgsc.ca	37	chr2	160869814	160869814	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	tgcaggaggacagtaataacCgctggaagcttggtcaaagc	13	8	1	0	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	PLA2R1-93	NM_001195641	exon10	c.G1624A	p.G542S	AATAACCGCTGGA	.	70	4	53	0	.	3	3	0	0	0	T	160869814	C	T	160869814	3	4	49	1	0	0	0	0	1	0	0	0	12039	652	23	1	2859	1	PLA2R1	2	160869814	Missense_Mutation	SNP	C	TCGA-OR-A5LB-01A-11D-A29I-10	32822871	160869814	82329559	38	9742										
SLC40A1	30061	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	190430180	190430180	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	taaaccttccagagcagaacGtactccacgcacatggatac	7	13	0	2	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	SLC40A1-91	NM_014585	exon6	c.C660T	p.Y220Y	CAGAACGTACTCC	.	130	106	114	0	.	0	0	0	0	0	A	190430180	G	A	190430180	2	1	49	1	0	0	0	0	0	0	0	1	14663	1140	40	1		1	SLC40A1	2	190430180	Silent	SNP	G	TCGA-OR-A5LB-01A-11D-A29I-10	29560366	190430180	52769193	39	9743										
ORMDL1	94101	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	190640321	190640321	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	gagaaattgtgaaaaacttcCgtgaagatgtaaactgtact	9	5	0	4	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	ORMDL1-68	NM_016467	exon4	c.G296A	p.R99Q	AACTTCCGTGAAG	.	69	20	64	1	.	37	26	11	0	0	T	190640321	C	T	190640321	3	4	49	1	0	0	0	0	1	0	0	0	11298	652	23	1	173	1	ORMDL1	2	190640321	Missense_Mutation	SNP	C	TCGA-OR-A5LB-01A-11D-A29I-10	210141	190640321	52559052	40	9744										
SPEG	10290	broad.mit.edu	37	chr2	220354177	220354177	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	ccctagctcctgctgcccccAcacccccgtcagtcactgtc	6	22	2	0	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	SPEG-383	NM_005876	exon36	c.A8437C	p.T2813P	GCCCCCACACCCC	.	28	3	26	2	.	0	0	0	0	0	C	220354177	A	C	220354177	3	2	49	1	0	0	0	0	1	0	0	0	15073	159	6	5	8591	5	SPEG	2	220354177	Missense_Mutation	SNP	A	TCGA-OR-A5LB-01A-11D-A29I-10	29713856	220354177	22845196	41	9745										
DNAJB3	414061	hgsc.bcm.edu;bcgsc.ca	37	chr2	234652188	234652188	+	Frame_Shift_Del	DEL	C	C	-													0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	ttccccagcagttcctctgaCccccccaaaatattctccag					novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	.	NM_001001394	exon1	c.375delG	p.G125fs	CTCTGACCCCCCC	.	74	61	117	0	.	0	0	0	0	0	-	234652188	C	-	234652188	7	5	49	1	0	1	0	1	0	0	0	0	4632	494	18	0	66	0	DNAJB3	2	234652188	Frame_Shift_Del	DEL	C	TCGA-OR-A5LB-01A-11D-A29I-10	14298011	234652188	8547185	42	9746										
SH3BP4	23677	broad.mit.edu	37	chr2	235949696	235949696	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	ctggcggtgagtggtggtacGcacacaacaccaccgaaatg	13	11	0	1	rs199774203		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	SH3BP4-94	NM_014521	exon4	c.G283A	p.A95T	TGGTACGCACACA	.	305	10	277	1	G|0.999;A|0.000	11	11	0	0	0	A	235949696	G	A	235949696	3	1	49	1	0	0	0	0	1	0	0	0	14281	1087	38	1	289	1	SH3BP4	2	235949696	Missense_Mutation	SNP	G	TCGA-OR-A5LB-01A-11D-A29I-10	1297508	235949696	7249677	43	9747										
ANO7	50636	bcgsc.ca	37	chr2	242148703	242148703	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	cccgctccctgccacaggccGgccggctgttcgaccacggc	12	20	0	0	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	ANO7-92	NM_001001891	exon12	c.G1243A	p.G415S	CAGGCCGGCCGGC	.	63	4	62	0	.	0	0	0	0	0	A	242148703	G	A	242148703	3	1	49	1	0	0	0	0	1	0	0	0	702	1116	39	1	1361	1	ANO7	2	242148703	Missense_Mutation	SNP	G	TCGA-OR-A5LB-01A-11D-A29I-10	6199007	242148703	1050670	44	9748										
SETD5	55209	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	9516182	9516182	+	Nonsense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	gagaaggagggagcatccccAaggtcctccgaagcagcgtg	15	11	0	1	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	SETD5-70	NM_001080517	exon21	c.A3547T	p.K1183X	ATCCCCAAGGTCC	.	105	86	70	0	.	31	4	27	0	0	T	9516182	A	T	9516182	4	4	49	1	0	0	0	0	0	1	0	0	14169	131	5	5	3621	5	SETD5	3	9516182	Nonsense_Mutation	SNP	A	TCGA-OR-A5LB-01A-11D-A29I-10		9516182	188506248	45	9749										
SLC6A11	6538	broad.mit.edu;bcgsc.ca	37	chr3	10858122	10858122	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	gccactggaacaacaaggtgGagttcgtgctgagcgtggcc	15	10	0	1	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	SLC6A11-132	NM_014229	exon1	c.G172A	p.E58K	AAGGTGGAGTTCG	.	291	10	172	0	.	0	0	0	0	0	A	10858122	G	A	10858122	3	1	49	1	0	0	0	0	1	0	0	0	14709	1175	41	3	174	3	SLC6A11	3	10858122	Missense_Mutation	SNP	G	TCGA-OR-A5LB-01A-11D-A29I-10	1341940	10858122	187164308	46	9750										
STAC	6769	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr3	36570404	36570406	+	In_Frame_Del	DEL	AGA	AGA	-													0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	tcagagactacaacaaaatgAgaagatttttagatgtgtta					novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	AGA	AGA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	STAC-94	NM_003149	exon10	c.1037_1039del	p.346_347del	AAAATGAGAAGAT	.	80	75	85	0	.	0	0	0	0	0	-	36570406	AGA	-	36570404	7	5	49	1	0	1	0	1	0	0	0	0	15276	304	11	0	1075	0	STAC	3	36570404	In_Frame_Del	DEL	AGA	TCGA-OR-A5LB-01A-11D-A29I-10	25712282	36570404	161452026	47	9751										
MLH1	4292	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr3	37042447	37042449	+	In_Frame_Del	DEL	AAG	AAG	-													0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	tctttttggtatctaacagaAagaagatctggatattgtat					novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	AAG	AAG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	MLH1-2559	NM_000249	exon3	c.209_211del	p.70_71del	AACAGAAAGAAGA	.	61	51	65	0	.	0	0	0	0	0	-	37042449	AAG	-	37042447	7	5	49	1	0	1	0	1	0	0	0	0	9645	28	1	0	219	0	MLH1	3	37042447	In_Frame_Del	DEL	AAG	TCGA-OR-A5LB-01A-11D-A29I-10	472043	37042447	160979983	48	9752										
XIRP1	165904	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	39230192	39230192	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	ggccttgacctcatggatggCgccctctgcatcctggatgg	13	13	2	1	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	XIRP1-158	NM_001198621	exon2	c.G745A	p.A249T	GGATGGCGCCCTC	.	57	45	47	0	.	0	0	0	0	0	T	39230192	C	T	39230192	3	4	49	1	0	0	0	0	1	0	0	0	17467	768	27	1	4790	1	XIRP1	3	39230192	Missense_Mutation	SNP	C	TCGA-OR-A5LB-01A-11D-A29I-10	2187745	39230192	158792238	49	9753										
RBM5	10181	hgsc.bcm.edu	37	chr3	50155887	50155888	+	Frame_Shift_Ins	INS	-	-	GA													0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	ccggttcactgagatggagtINSgagagagagagagagagaga					rs112672304		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	RBM5-278	NM_005778	exon25	c.2446_2447insGA	p.X816delinsX	ATGGAGTGAGAGA	.	59	21	72	0	-|0.500;GA|0.500	0	0	0	0	0	GA	50155888	-	GA	50155887	7	5	49	1	0	1	1	0	0	0	0	0	13178	1709	59	0	2540	0	RBM5	3	50155887	Frame_Shift_Ins	INS	-	TCGA-OR-A5LB-01A-11D-A29I-10	10925695	50155887	147866543	50	9754										
SEMA3G	56920	broad.mit.edu	37	chr3	52476810	52476810	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	cagccgcagagagtagagggCgtccaggccacccagaaaga	14	12	0	4	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	SEMA3G-70	NM_020163	exon2	c.G229A	p.A77T	AGAGGGCGTCCAG	.	211	4	172	0	.	1	1	0	0	0	T	52476810	C	T	52476810	3	4	49	1	0	0	0	0	1	0	0	0	14065	768	27	1	2179	1	SEMA3G	3	52476810	Missense_Mutation	SNP	C	TCGA-OR-A5LB-01A-11D-A29I-10	2320923	52476810	145545620	51	9755										
PDZRN3	23024	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr3	73432786	73432788	+	In_Frame_Del	DEL	CTC	CTC	-													0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	ttcaccaggtgctgcttcctCtcctccttgctccagtagcg					novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	CTC	CTC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	PDZRN3-232	NM_015009	exon10	c.2929_2931del	p.977_977del	CTTCCTCTCCTCC	.	94	82	85	0	.	0	0	0	0	0	-	73432788	CTC	-	73432786	7	5	49	1	0	1	0	1	0	0	0	0	11738	912	32	0	273	0	PDZRN3	3	73432786	In_Frame_Del	DEL	CTC	TCGA-OR-A5LB-01A-11D-A29I-10	20955976	73432786	124589644	52	9756										
ITGB5	3693	broad.mit.edu;bcgsc.ca	37	chr3	124515279	124515279	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	tggcacaggagaagttgtcgCactcacagaaaggcccatag	12	10	1	2	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	ITGB5-227	NM_002213	exon10	c.G1649A	p.C550Y	TTGTCGCACTCAC	.	147	7	113	0	.	55	54	1	0	0	T	124515279	C	T	124515279	3	4	49	1	0	0	0	0	1	0	0	0	7919	710	25	3	774	3	ITGB5	3	124515279	Missense_Mutation	SNP	C	TCGA-OR-A5LB-01A-11D-A29I-10	51082493	124515279	73507151	53	9757										
COL6A5	256076	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr3	130159651	130159651	+	Frame_Shift_Del	DEL	T	T	-													0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	ttgcgaagttcttaaagccaTttttatactcggtcaggcgt					novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	.	NM_153264	exon35	c.6469delT	p.F2157fs	AAGCCATTTTTAT	.	77	33	54	0	.	0	0	0	0	0	-	130159651	T	-	130159651	7	5	49	1	0	1	0	1	0	0	0	0	3708	1493	52	0	6603	0	COL6A5	3	130159651	Frame_Shift_Del	DEL	T	TCGA-OR-A5LB-01A-11D-A29I-10	5644372	130159651	67862779	54	9758										
EPHB3	2049	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	184299402	184299402	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	tgaaccagacgctgcctgtgCaggtctgacaccggctccca	11	15	1	3	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	EPHB3-1455	NM_004443	exon16	c.C2989A	p.Q997K	CCTGTGCAGGTCT	.	124	107	130	0	.	2	1	1	0	0	A	184299402	C	A	184299402	3	1	49	1	0	0	0	0	1	0	0	0	5189	711	25	3	3051	3	EPHB3	3	184299402	Missense_Mutation	SNP	C	TCGA-OR-A5LB-01A-11D-A29I-10	54139751	184299402	13723028	55	9759										
FAM43A	131583	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	194407766	194407766	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	ctagcgaggacccaacttacAccgtgctctacctgggcaat	9	14	1	0	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	FAM43A-90	NM_153690	exon1	c.A211G	p.T71A	ACTTACACCGTGC	.	351	310	279	1	.	4	4	0	0	0	G	194407766	A	G	194407766	3	3	49	1	0	0	0	0	1	0	0	0	5581	159	6	4	213	4	FAM43A	3	194407766	Missense_Mutation	SNP	A	TCGA-OR-A5LB-01A-11D-A29I-10	10108364	194407766	3614664	56	9760										
MUC4	4585	bcgsc.ca	37	chr3	195505791	195505791	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	acaggaagaggggtggcgtgAcctgtggatgctgaggaagt	19	5	0	3	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	MUC4-90	NM_018406	exon2	c.T12660A	p.G4220G	GGCGTGACCTGTG	.	326	34	283	4	.	0	0	0	0	0	T	195505791	A	T	195505791	2	4	49	1	0	0	0	0	0	0	0	1	10006	262	10	5		5	MUC4	3	195505791	Silent	SNP	A	TCGA-OR-A5LB-01A-11D-A29I-10	1098025	195505791	2516639	57	9761										
MUC4	4585	bcgsc.ca	37	chr3	195505870	195505870	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	ctgaggaagtgtcggtgacaGgaagaggggtggtgtcacct	18	6	1	3	rs201928034		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	MUC4-90	NM_018406	exon2	c.C12581T	p.P4194L	GTGACAGGAAGAG	.	316	21	251	6	.	0	0	0	0	0	A	195505870	G	A	195505870	3	1	49	1	0	0	0	0	1	0	0	0	10006	1000	35	3		3	MUC4	3	195505870	Missense_Mutation	SNP	G	TCGA-OR-A5LB-01A-11D-A29I-10	79	195505870	2516560	58	9762										
MUC4	4585	bcgsc.ca	37	chr3	195510020	195510020	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	aagagaggtggcgtgacctgTggacactgacgaagcgtcgg	17	8	0	3	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	MUC4-90	NM_018406	exon2	c.A8431T	p.T2811S	GACCTGTGGACAC	.	96	27	276	5	.	0	0	0	0	0	A	195510020	T	A	195510020	3	1	49	1	0	0	0	0	1	0	0	0	10006	1696	59	5		5	MUC4	3	195510020	Missense_Mutation	SNP	T	TCGA-OR-A5LB-01A-11D-A29I-10	4150	195510020	2512410	59	9763										
STIM2	57620	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	27000929	27000929	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	agtcacagacaaaaacttcaGctcaaggcattggatgtggt	10	8	3	1	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	STIM2-91	NM_001169118	exon5	c.G585A	p.Q195Q	ACTTCAGCTCAAG	.	144	62	59	0	.	9	7	2	0	0	A	27000929	G	A	27000929	2	1	49	1	0	0	0	0	0	0	0	1	15321	962	34	3		3	STIM2	4	27000929	Silent	SNP	G	TCGA-OR-A5LB-01A-11D-A29I-10		27000929	164153347	60	9764										
TLR6	10333	hgsc.bcm.edu;bcgsc.ca	37	chr4	38830935	38830935	+	Frame_Shift_Del	DEL	T	T	-													0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	agacatatctaagactttggTtttcagcggtaggtcttttg					novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	TLR6-524	NM_006068	exon2	c.160delA	p.T54fs	CTTTGGTTTTCAG	.	171	83	79	1	.	0	0	0	0	0	-	38830935	T	-	38830935	7	5	49	1	0	1	0	1	0	0	0	0	15992	1725	60	0	2234	0	TLR6	4	38830935	Frame_Shift_Del	DEL	T	TCGA-OR-A5LB-01A-11D-A29I-10	11830006	38830935	152323341	61	9765										
FRYL	285527	bcgsc.ca	37	chr4	48592687	48592687	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	taaactaacctatgacttttGcttcttcatctgtcaaggtt	5	9	4	1	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	FRYL-69	NM_015030	exon17	c.C1496A	p.A499E	ACTTTTGCTTCTT	.	58	4	34	0	.	0	0	0	0	0	T	48592687	G	T	48592687	3	4	49	1	0	0	0	0	1	0	0	0	6083	1319	46	3	7737	3	FRYL	4	48592687	Missense_Mutation	SNP	G	TCGA-OR-A5LB-01A-11D-A29I-10	9761752	48592687	142561589	62	9766										
UGT2B15	7366	hgsc.bcm.edu	37	chr4	69536320	69536320	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	gtatcagcagaaagactgacGtccatttcagagacatcctg	9	10	2	4	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	UGT2B15-46	NM_001076	exon1	c.C17T	p.T6M	ACTGACGTCCATT	.	133	8	60	0	.	0	0	0	0	0	A	69536320	G	A	69536320	3	1	49	1	0	0	0	0	1	0	0	0	16996	1145	40	1	3216	1	UGT2B15	4	69536320	Missense_Mutation	SNP	G	TCGA-OR-A5LB-01A-11D-A29I-10	20943633	69536320	121617956	63	9767										
SHROOM3	57619	hgsc.bcm.edu	37	chr4	77662309	77662309	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	tgacccctgctgagggcgacCtggccaggcccgtgccccct	13	18	0	2	rs344143	byfrequency	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	SHROOM3-93	NM_020859	exon5	c.C2983T	p.L995L	GGCGACCTGGCCA	.	10	10	0	0	C|0.604;T|0.396	3	0	3	0	0	T	77662309	C	T	77662309	2	4	49	1	0	0	0	0	0	0	0	1	14330	680	24	3		3	SHROOM3	4	77662309	Silent	SNP	C	TCGA-OR-A5LB-01A-11D-A29I-10	8125989	77662309	113491967	64	9768										
PRKG2	5593	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	82126123	82126123	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	cagctctgtcaccttgttccGcagagcatcagtggtgaggt	12	11	3	2	rs187350442		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	PRKG2-524	NM_006259	exon1	c.C79T	p.R27W	TGTTCCGCAGAGC	.	295	139	137	2	G|0.999;A|0.001	0	0	0	0	0	A	82126123	G	A	82126123	3	1	49	1	0	0	0	0	1	0	0	0	12555	1086	38	1	2281	1	PRKG2	4	82126123	Missense_Mutation	SNP	G	TCGA-OR-A5LB-01A-11D-A29I-10	4463814	82126123	109028153	65	9769										
HERC6	55008	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr4	89311864	89311865	+	Frame_Shift_Ins	INS	-	-	C													0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	ctgggcttggggaaggagttINScccctcccaagccagcccgc					novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	HERC6-658	NM_017912	exon4	c.497_498insC	p.F166fs	AGGAGTTCCCCTC	.	165	76	80	0	.	0	0	0	0	0	C	89311865	-	C	89311864	7	5	49	1	0	1	1	0	0	0	0	0	7083	1783	62	0	308	0	HERC6	4	89311864	Frame_Shift_Ins	INS	-	TCGA-OR-A5LB-01A-11D-A29I-10	7185741	89311864	101842412	66	9770										
UNC5C	8633	hgsc.bcm.edu;bcgsc.ca	37	chr4	96140294	96140294	+	Frame_Shift_Del	DEL	G	G	-													0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	aaactcagagaggtcatcttGgggggtgacagcacctgagg					novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	UNC5C-94	NM_003728	exon9	c.1471delC	p.Q491fs	CATCTTGGGGGGT	.	450	214	149	0	.	0	0	0	0	0	-	96140294	G	-	96140294	7	5	49	1	0	1	0	1	0	0	0	0	17031	1357	47	0	1356	0	UNC5C	4	96140294	Frame_Shift_Del	DEL	G	TCGA-OR-A5LB-01A-11D-A29I-10	6828430	96140294	95013982	67	9771										
AP1AR	55435	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	113189441	113189441	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	caatgggctggagtgggaaaAtgattttgttagtgccgaaa	14	4	0	1	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	AP1AR-90	NM_018569	exon10	c.A785G	p.N262S	GGGAAAATGATTT	.	213	92	133	0	.	49	32	16	0	1	G	113189441	A	G	113189441	3	3	49	1	0	0	0	0	1	0	0	0	730	101	4	4	823	4	AP1AR	4	113189441	Missense_Mutation	SNP	A	TCGA-OR-A5LB-01A-11D-A29I-10	17049147	113189441	77964835	68	9772										
ANK2	287	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	114276759	114276759	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	aaagacaagatgattgcacaGgcagctgtagtgtagcatta	11	6	0	3	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	ANK2-583	NM_001148	exon38	c.G6985A	p.G2329S	TGCACAGGCAGCT	.	154	70	82	0	.	0	0	0	0	0	A	114276759	G	A	114276759	3	1	49	1	0	0	0	0	1	0	0	0	621	1000	35	3	7200	3	ANK2	4	114276759	Missense_Mutation	SNP	G	TCGA-OR-A5LB-01A-11D-A29I-10	1087318	114276759	76877517	69	9773										
FAT4	79633	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr4	126369791	126369791	+	Frame_Shift_Del	DEL	A	A	-													0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	gtgacattttctgtgcatgtAaaagatggtggctcatttcc					novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	FAT4-108	NM_024582	exon9	c.7620delA	p.V2540fs	GCATGTAAAAGAT	.	259	115	105	0	.	0	0	0	0	0	-	126369791	A	-	126369791	7	5	49	1	0	1	0	1	0	0	0	0	5711	349	13	0	7654	0	FAT4	4	126369791	Frame_Shift_Del	DEL	A	TCGA-OR-A5LB-01A-11D-A29I-10	12093032	126369791	64784485	70	9774										
NAA15	80155	hgsc.bcm.edu;bcgsc.ca	37	chr4	140291458	140291459	+	Frame_Shift_Del	DEL	AA	AA	-													0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	agaagagaaaaaaaatgcagAaaaagaaaagcagcagagaa					novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	AA	AA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	NAA15-92	NM_057175	exon15	c.1847_1848del	p.616_616del	ATGCAGAAAAAGA	.	214	109	123	2	.	0	0	0	0	0	-	140291459	AA	-	140291458	7	5	49	1	0	1	0	1	0	0	0	0	10146	246	9	0	1905	0	NAA15	4	140291458	Frame_Shift_Del	DEL	AA	TCGA-OR-A5LB-01A-11D-A29I-10	13921667	140291458	50862818	71	9775										
ZNF330	27309	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	142143548	142143548	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	gcctaaaaaaaagactggtgCgaggaagaaggctgagaacc	13	7	0	3	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	ZNF330-90	NM_014487	exon2	c.C23T	p.A8V	CTGGTGCGAGGAA	.	333	160	164	0	.	52	23	29	0	0	T	142143548	C	T	142143548	3	4	49	1	0	0	0	0	1	0	0	0	17885	768	27	1	25	1	ZNF330	4	142143548	Missense_Mutation	SNP	C	TCGA-OR-A5LB-01A-11D-A29I-10	1852090	142143548	49010728	72	9776										
DCLK2	166614	bcgsc.ca	37	chr4	151000382	151000384	+	In_Frame_Del	DEL	AGA	AGA	-													0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	cctgcaggccctcagctcggAgaagaaggccaagaaggcgc					novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	AGA	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	DCLK2-300	NM_001040260	exon1	c.203_205del	p.68_69del	GCTCGGAGAAGAA	.	665	0	297	4	.	0	0	0	0	0	-	151000384	AGA	-	151000382	7	5	49	1	0	1	0	1	0	0	0	0	4298	304	11	0	205	0	DCLK2	4	151000382	In_Frame_Del	DEL	AGA	TCGA-OR-A5LB-01A-11D-A29I-10	8856834	151000382	40153894	73	9777										
ACSL1	2180	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	185684335	185684335	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	actcacctcgccctcgccctCggcagccatgtaattcattt	6	17	2	0	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	ACSL1-92	NM_001995	exon16	c.G1507A	p.E503K	CGCCCTCGGCAGC	.	72	66	72	0	.	13	0	13	0	0	T	185684335	C	T	185684335	3	4	49	1	0	0	0	0	1	0	0	0	177	893	31	1	613	1	ACSL1	4	185684335	Missense_Mutation	SNP	C	TCGA-OR-A5LB-01A-11D-A29I-10	34683953	185684335	5469941	74	9778										
DNAH5	1767	bcgsc.ca	37	chr5	13766210	13766210	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	cctttgaaacagcagcagtaCgcaatccatgatccgcatga	8	12	0	3	rs149452082	alternate_allele	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	DNAH5-182	NM_001369	exon59	c.G9976A	p.V3326I	GCAGTACGCAATC	.	192	114	97	2	C|1.000;A|0.000	0	0	0	0	0	T	13766210	C	T	13766210	3	4	49	1	0	0	0	0	1	0	0	0	4615	536	19	1	3982	1	DNAH5	5	13766210	Missense_Mutation	SNP	C	TCGA-OR-A5LB-01A-11D-A29I-10		13766210	167149050	75	9779										
AGXT2	64902	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	34998917	34998917	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	ttagtgatgcacattgagggCgcaatgcgaaatgtctgagg	14	6	1	3	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	AGXT2-94	NM_031900	exon14	c.G1452A	p.A484A	TGAGGGCGCAATG	.	100	40	65	0	.	0	0	0	0	0	T	34998917	C	T	34998917	2	4	49	1	0	0	0	0	0	0	0	1	405	755	27	1		1	AGXT2	5	34998917	Silent	SNP	C	TCGA-OR-A5LB-01A-11D-A29I-10	21232707	34998917	145916343	76	9780										
NUP155	9631	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr5	37348627	37348628	+	Frame_Shift_Del	DEL	AG	AG	-													0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	ctagcaatgttaccagcagcAgagacaatggcattctgtga					novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	AG	AG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	NUP155-205	NM_153485	exon9	c.974_975del	p.325_325del	AGCAGCAGAGACA	.	683	313	384	0	.	0	0	0	0	0	-	37348628	AG	-	37348627	7	5	49	1	0	1	0	1	0	0	0	0	10785	175	7	0	3308	0	NUP155	5	37348627	Frame_Shift_Del	DEL	AG	TCGA-OR-A5LB-01A-11D-A29I-10	2349710	37348627	143566633	77	9781										
OSMR	9180	hgsc.bcm.edu;broad.mit.edu	37	chr5	38923329	38923329	+	Frame_Shift_Del	DEL	A	A	-													0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	ggattgcttgtttattagagAaaaaaacaggatactctcag					novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	OSMR-496	NM_003999	exon13	c.1843delA	p.K615fs	TTAGAGAAAAAAA	.	62	11	37	0	.	0	0	0	0	0	-	38923329	A	-	38923329	7	5	49	1	0	1	0	1	0	0	0	0	11321	247	9	0	1927	0	OSMR	5	38923329	Frame_Shift_Del	DEL	A	TCGA-OR-A5LB-01A-11D-A29I-10	1574702	38923329	141991931	78	9782										
CWC27	10283	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr5	64100133	64100134	+	Frame_Shift_Ins	INS	-	-	A													0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	tgatgagagaaagaattgccINSaaaaaattaaaaaaggacac					novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	CWC27-90	NM_005869	exon10	c.858_859insA	p.A286fs	AATTGCCAAAAAA	.	68	33	28	0	.	0	0	0	0	0	A	64100134	-	A	64100133	7	5	49	1	0	1	1	0	0	0	0	0	4076	581	21	0	896	0	CWC27	5	64100133	Frame_Shift_Ins	INS	-	TCGA-OR-A5LB-01A-11D-A29I-10	25176804	64100133	116815127	79	9783										
SPATA9	83890	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	94994526	94994526	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	gctcagaaaaggcttttctaCaattttcactctcctctctg	5	12	5	1	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	SPATA9-90	NM_031952	exon5	c.G566T	p.C189F	TTTCTACAATTTT	.	62	29	44	0	.	1	0	1	0	0	A	94994526	C	A	94994526	3	1	49	1	0	0	0	0	1	0	0	0	15053	478	17	3	202	3	SPATA9	5	94994526	Missense_Mutation	SNP	C	TCGA-OR-A5LB-01A-11D-A29I-10	30894393	94994526	85920734	80	9784										
MCC	4163	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	112720886	112720886	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	actcttccatattcagctggCgacagaccattagcaagtca	7	12	3	1	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	MCC-69	NM_001085377	exon2	c.G194A	p.R65H	AGCTGGCGACAGA	.	260	108	144	0	.	0	0	0	0	0	T	112720886	C	T	112720886	3	4	49	1	0	0	0	0	1	0	0	0	9401	768	27	1	2998	1	MCC	5	112720886	Missense_Mutation	SNP	C	TCGA-OR-A5LB-01A-11D-A29I-10	17726360	112720886	68194374	81	9785										
AQPEP	0	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr5	115335468	115335468	+	Frame_Shift_Del	DEL	T	T	-													0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	ttcctttatagaatgagatcTttttttctaacattttacat					novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	.	NM_173800	exon7	c.1384delT	p.F462fs	GAGATCTTTTTTT	.	200	92	102	0	.	0	0	0	0	0	-	115335468	T	-	115335468	7	5	49	1	0	1	0	1	0	0	0	0	834	1609	56	0	1410	0	AQPEP	5	115335468	Frame_Shift_Del	DEL	T	TCGA-OR-A5LB-01A-11D-A29I-10	2614582	115335468	65579792	82	9786										
FBN2	2201	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	127728872	127728872	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	gtcccccggcccccacaccgGctcccccaacgccaggagaa	9	22	0	1	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	FBN2-146	NM_001999	exon10	c.C1421T	p.A474V	ACACCGGCTCCCC	.	126	61	61	0	.	0	0	0	0	0	A	127728872	G	A	127728872	3	1	49	1	0	0	0	0	1	0	0	0	5722	1203	42	3	7541	3	FBN2	5	127728872	Missense_Mutation	SNP	G	TCGA-OR-A5LB-01A-11D-A29I-10	12393404	127728872	53186388	83	9787										
PCDHA10	56139	bcgsc.ca	37	chr5	140237079	140237079	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	gtgtctgcgtgggacgcggaCgcgcaggagaacgccctggt	18	11	1	1	rs189056024	by1000genomes;alternate_allele	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	PCDHA10-99	NM_031859	exon1	c.C1446T	p.D482D	CGCGGACGCGCAG	.	987	432	247	4	C|0.999;A|0.000	2	0	2	0	0	T	140237079	C	T	140237079	2	4	49	1	0	0	0	0	0	0	0	1	11549	535	19	1		1	PCDHA10	5	140237079	Silent	SNP	C	TCGA-OR-A5LB-01A-11D-A29I-10	12508207	140237079	40678181	84	9788										
ERGIC1	57222	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	172315747	172315747	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	aaggaccttacgcagccaacGtacaccggggccattagtga	11	12	0	1	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	ERGIC1-93	NM_001031711	exon2	c.G66A	p.T22T	GCCAACGTACACC	.	346	133	165	1	.	62	34	28	0	0	A	172315747	G	A	172315747	2	1	49	1	0	0	0	0	0	0	0	1	5236	1132	40	1		1	ERGIC1	5	172315747	Silent	SNP	G	TCGA-OR-A5LB-01A-11D-A29I-10	32078668	172315747	8599513	85	9789										
CLTB	1212	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	175824972	175824972	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	tctgctcctctcgccacttgCggatgctctcaggctcctgg	10	16	3	0	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	CLTB-90	NM_001834	exon3	c.G311A	p.R104H	CACTTGCGGATGC	.	239	39	122	0	.	386	315	71	0	0	T	175824972	C	T	175824972	3	4	49	1	0	0	0	0	1	0	0	0	3571	768	27	1	394	1	CLTB	5	175824972	Missense_Mutation	SNP	C	TCGA-OR-A5LB-01A-11D-A29I-10	3509225	175824972	5090288	86	9790										
NSD1	64324	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	176687121	176687121	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	ttacccctaggcggggctgcCgaaatcatgagcatgttaat	11	10	1	1	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	NSD1-188	NM_022455	exon14	c.C5098T	p.R1700X	GGCTGCCGAAATC	.	205	28	97	0	.	4	3	1	0	0	T	176687121	C	T	176687121	4	4	49	1	0	0	0	0	0	1	0	0	10698	644	23	1	5148	1	NSD1	5	176687121	Nonsense_Mutation	SNP	C	TCGA-OR-A5LB-01A-11D-A29I-10	862149	176687121	4228139	87	9791										
RASGEF1C	255426	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	179564923	179564923	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	caggtgctggatcagtgtttCcagggaggctgaggatggcg	18	7	1	1	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	RASGEF1C-228	NM_175062	exon2	c.G130T	p.E44X	GTGTTTCCAGGGA	.	388	66	170	0	.	0	0	0	0	0	A	179564923	C	A	179564923	4	1	49	1	0	0	0	0	0	1	0	0	13106	864	30	3	1322	3	RASGEF1C	5	179564923	Nonsense_Mutation	SNP	C	TCGA-OR-A5LB-01A-11D-A29I-10	2877802	179564923	1350337	88	9792										
EHMT2	10919	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr6	31857309	31857311	+	In_Frame_Del	DEL	TCT	TCT	-													0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	cctcttcctcctcctcttccTcttcttcttcttcctcctct					novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	TCT	TCT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	EHMT2-91	NM_025256	exon8	c.933_935del	p.311_312del	TCTTCCTCTTCTT	.	52	10	74	0	.	0	0	0	0	0	-	31857311	TCT	-	31857309	7	5	49	1	0	1	0	1	0	0	0	0	4995	1551	54	0	2781	0	EHMT2	6	31857309	In_Frame_Del	DEL	TCT	TCGA-OR-A5LB-01A-11D-A29I-10		31857309	139257758	89	9793										
BTNL2	56244	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	32370751	32370751	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	ccccttctcctcagtgaggaCggggttgtggaccaagcagg	14	12	2	1	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	BTNL2-90	NM_019602	exon3	c.G670A	p.V224I	TGAGGACGGGGTT	.	182	159	178	2	.	0	0	0	0	0	T	32370751	C	T	32370751	3	4	49	1	0	0	0	0	1	0	0	0	1568	536	19	1	713	1	BTNL2	6	32370751	Missense_Mutation	SNP	C	TCGA-OR-A5LB-01A-11D-A29I-10	513442	32370751	138744316	90	9794										
HLA-DQB1	3119	bcgsc.ca	37	chr6	32628022	32628022	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	agtctcaggagtcagtgcagAagccctggagaagagagaag	15	7	2	4	rs1140347	byfrequency	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	HLA-DQB1-22	NM_001243961	exon6	c.T801C	p.L267L	GTGCAGAAGCCCT	.	14	5	81	1	A|0.440;G|0.560	0	0	0	0	0	G	32628022	A	G	32628022	2	3	49	1	0	0	0	0	0	0	0	1	7227	233	9	4		4	HLA-DQB1	6	32628022	Silent	SNP	A	TCGA-OR-A5LB-01A-11D-A29I-10	257271	32628022	138487045	91	9795										
B3GALT4	8705	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	33245779	33245779	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	agctggtcttgcgagggggcCgttgggggcaatgggagaga	21	6	1	1	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	B3GALT4-68	NM_003782	exon1	c.C583T	p.R195C	GGGGGCCGTTGGG	.	125	111	101	1	.	15	2	13	0	0	T	33245779	C	T	33245779	3	4	49	1	0	0	0	0	1	0	0	0	1250	652	23	1	585	1	B3GALT4	6	33245779	Missense_Mutation	SNP	C	TCGA-OR-A5LB-01A-11D-A29I-10	617757	33245779	137869288	92	9796										
DAXX	1616	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr6	33288228	33288232	+	Frame_Shift_Del	DEL	TCTTT	TCTTT	-													0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	gccttggagccgagctcttcTcttttttctctcgccctcct					novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	TCTTT	TCTTT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	DAXX-731	NM_001141970	exon4	c.1212_1216del	p.404_406del	CTCTTCTCTTTTT	.	48	41	62	0	.	0	0	0	0	0	-	33288232	TCTTT	-	33288228	7	5	49	1	0	1	0	1	0	0	0	0	4249	1559	54	0	1062	0	DAXX	6	33288228	Frame_Shift_Del	DEL	TCTTT	TCGA-OR-A5LB-01A-11D-A29I-10	42449	33288228	137826839	93	9797										
KLHL31	401265	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	53519456	53519456	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	gtaagtttcataaactgatcCgattctgcaaattcaaggaa	7	7	3	1	rs114605120	alternate_allele	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	KLHL31-23	NM_001003760	exon2	c.G615T	p.S205S	CTGATCCGATTCT	.	56	48	71	0	C|0.999;T|0.001	0	0	0	0	0	A	53519456	C	A	53519456	2	1	49	1	0	0	0	0	0	0	0	1	8406	639	23	2		2	KLHL31	6	53519456	Silent	SNP	C	TCGA-OR-A5LB-01A-11D-A29I-10	20231228	53519456	117595611	94	9798										
SYNE1	23345	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	152751308	152751308	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	aacatattttaattggaacaGcaagtttatcttcaaattca	4	6	3	0	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	SYNE1-607	NM_033071	exon36	c.C4748T	p.A1583V	GGAACAGCAAGTT	.	119	109	137	0	.	0	0	0	0	0	A	152751308	G	A	152751308	3	1	49	1	0	0	0	0	1	0	0	0	15482	971	34	3	22183	3	SYNE1	6	152751308	Missense_Mutation	SNP	G	TCGA-OR-A5LB-01A-11D-A29I-10	99231852	152751308	18363759	95	9799										
PMS2	5395	broad.mit.edu;bcgsc.ca	37	chr7	6026767	6026767	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	tccacatctgaaaaagagtcGtcagttttaggcgctttctc	8	10	3	2	rs111673299		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	PMS2-1083	NM_000535	exon11	c.C1629T	p.D543D	AGAGTCGTCAGTT	.	161	74	69	2	A|1.000;|0.000	3	0	3	0	0	A	6026767	G	A	6026767	2	1	49	1	0	0	0	0	0	0	0	1	12172	1136	40	1		1	PMS2	7	6026767	Silent	SNP	G	TCGA-OR-A5LB-01A-11D-A29I-10		6026767	153111896	96	9800										
TMEM196	256130	hgsc.bcm.edu;broad.mit.edu	37	chr7	19769017	19769017	+	Frame_Shift_Del	DEL	T	T	-													0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	acacttacgacaagtcctgaTttttttttggcacacaatat					novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	TMEM196-22	NM_152774	exon2	c.192delA	p.K64fs	TCCTGATTTTTTT	.	94	40	42	0	.	0	0	0	0	0	-	19769017	T	-	19769017	7	5	49	1	0	1	0	1	0	0	0	0	16155	1490	52	0	338	0	TMEM196	7	19769017	Frame_Shift_Del	DEL	T	TCGA-OR-A5LB-01A-11D-A29I-10	13742250	19769017	139369646	97	9801										
TNS3	64759	hgsc.bcm.edu;bcgsc.ca	37	chr7	47385878	47385878	+	Frame_Shift_Del	DEL	C	C	-													0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	catttggagaagggcagctgCcccccagcatcgttgtcgta					novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	TNS3-94	NM_022748	exon18	c.2358delG	p.G786fs	CAGCTGCCCCCCA	.	169	82	72	1	.	0	0	0	0	0	-	47385878	C	-	47385878	7	5	49	1	0	1	0	1	0	0	0	0	16381	726	26	0	2035	0	TNS3	7	47385878	Frame_Shift_Del	DEL	C	TCGA-OR-A5LB-01A-11D-A29I-10	27616861	47385878	111752785	98	9802										
ABCA13	154664	bcgsc.ca;mdanderson.org	37	chr7	48311657	48311657	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	aaactcttggaatttggcaaCgaagtgatttggaaaatgca	10	5	1	1	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	ABCA13-521	NM_152701	exon17	c.C2394T	p.N798N	TGGCAACGAAGTG	.	103	43	27	1	.	0	0	0	0	0	T	48311657	C	T	48311657	2	4	49	1	0	0	0	0	0	0	0	1	31	535	19	1		1	ABCA13	7	48311657	Silent	SNP	C	TCGA-OR-A5LB-01A-11D-A29I-10	925779	48311657	110827006	99	9803										
ZPBP	11055	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	50129273	50129273	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	cactgaatctttggtcaagcGaaaagctcttggtaatcgaa	9	8	3	1	rs200921057	alternate_allele	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	ZPBP-90	NM_007009	exon2	c.C160T	p.R54C	TCAAGCGAAAAGC	.	202	86	122	0	G|0.999;T|0.001	0	0	0	0	0	A	50129273	G	A	50129273	3	1	49	1	0	0	0	0	1	0	0	0	18256	1058	37	1	923	1	ZPBP	7	50129273	Missense_Mutation	SNP	G	TCGA-OR-A5LB-01A-11D-A29I-10	1817616	50129273	109009390	100	9804										
GTF2IRD1	9569	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr7	73944069	73944069	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	tggttgtctttccagcggaaGccctgggcctggaccacatg	13	12	1	0	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	GTF2IRD1-94	NM_001199207	exon9	c.G1192A	p.A398T	GCGGAAGCCCTGG	.	112	24	50	0	.	0	0	0	0	0	A	73944069	G	A	73944069	3	1	49	1	0	0	0	0	1	0	0	0	6889	971	34	3	1126	3	GTF2IRD1	7	73944069	Missense_Mutation	SNP	G	TCGA-OR-A5LB-01A-11D-A29I-10	23814796	73944069	85194594	101	9805										
DTX2	113878	broad.mit.edu	37	chr7	76112242	76112242	+	Frame_Shift_Del	DEL	A	A	-													0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	tgcataccccgtcccccagcAccccccacacaggaccgctt					novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	DTX2-524	NM_001102596	exon2	c.686delA	p.H229fs	CCCAGCACCCCCC	.	1156	9	496	0	.	0	0	0	0	0	-	76112242	A	-	76112242	7	5	49	1	0	1	0	1	0	0	0	0	4805	159	6	0	692	0	DTX2	7	76112242	Frame_Shift_Del	DEL	A	TCGA-OR-A5LB-01A-11D-A29I-10	2168173	76112242	83026421	102	9806										
TMEM130	222865	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr7	98452922	98452923	+	Frame_Shift_Ins	INS	-	-	A													0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	tctgaattagggtgggccccINSaacacttggatgcctcgaag					novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	TMEM130-91	NM_152913	exon5	c.744_745insT	p.L248fs	GGGCCCCAACACT	.	256	41	145	0	.	0	0	0	0	0	A	98452923	-	A	98452922	7	5	49	1	0	1	1	0	0	0	0	0	16080	593	21	0	579	0	TMEM130	7	98452922	Frame_Shift_Ins	INS	-	TCGA-OR-A5LB-01A-11D-A29I-10	22340680	98452922	60685741	103	9807										
ACHE	43	hgsc.bcm.edu	37	chr7	100491127	100491127	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	gctgggcggggacagcaggtGcatgcccaccgaggcggctc	18	13	0	0	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	ACHE-92	NM_000665	exon2	c.C727T	p.H243Y	GCAGGTGCATGCC	.	46	26	6	0	.	2	2	0	0	0	A	100491127	G	A	100491127	3	1	49	1	0	0	0	0	1	0	0	0	141	1319	46	3	1268	3	ACHE	7	100491127	Missense_Mutation	SNP	G	TCGA-OR-A5LB-01A-11D-A29I-10	2038205	100491127	58647536	104	9808										
PPP1R3A	5506	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	113519565	113519565	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	gaaattttttctttgtttttCattaacacctaaatatattc	2	6	2	0	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	PPP1R3A-832	NM_002711	exon4	c.G1582T	p.E528X	GTTTTTCATTAAC	.	61	10	53	0	.	0	0	0	0	0	A	113519565	C	A	113519565	4	1	49	1	0	0	0	0	0	1	0	0	12403	835	29	3	1790	3	PPP1R3A	7	113519565	Nonsense_Mutation	SNP	C	TCGA-OR-A5LB-01A-11D-A29I-10	13028438	113519565	45619098	105	9809										
CPA1	1357	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	130020366	130020366	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	ccctcccggcagcagcatgcGggggttgctggtgttgagtg	17	11	0	1	rs145988366	byfrequency	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	CPA1-91	NM_001868	exon1	c.G5A	p.R2Q	GCATGCGGGGGTT	.	53	34	31	0	G|1.000;A|0.000	0	0	0	0	0	A	130020366	G	A	130020366	3	1	49	1	0	0	0	0	1	0	0	0	3795	1116	39	1	7	1	CPA1	7	130020366	Missense_Mutation	SNP	G	TCGA-OR-A5LB-01A-11D-A29I-10	16500801	130020366	29118297	106	9810										
CPA1	1357	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	130021521	130021521	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	ggctcccccatcgacgtccgAgtgcccttccccagcatcca	8	20	0	0	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	CPA1-91	NM_001868	exon3	c.A198G	p.R66R	CGTCCGAGTGCCC	.	288	127	99	1	.	0	0	0	0	0	G	130021521	A	G	130021521	2	3	49	1	0	0	0	0	0	0	0	1	3795	291	11	4		4	CPA1	7	130021521	Silent	SNP	A	TCGA-OR-A5LB-01A-11D-A29I-10	1155	130021521	29117142	107	9811										
EXOC4	60412	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	132959896	132959896	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	taccagagcatcacagagcgCatcactaactcccgaaataa	6	13	2	2	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	EXOC4-159	NM_021807	exon2	c.C246T	p.R82R	AGAGCGCATCACT	.	362	148	159	0	.	9	5	4	0	0	T	132959896	C	T	132959896	2	4	49	1	0	0	0	0	0	0	0	1	5319	697	25	3		3	EXOC4	7	132959896	Silent	SNP	C	TCGA-OR-A5LB-01A-11D-A29I-10	2938375	132959896	26178767	108	9812										
PARP12	64761	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	139726084	139726084	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	cacaaaaatggcgctggtgcCgtggaacagctgccgctcgt	13	12	0	0	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	PARP12-525	NM_022750	exon11	c.G1693A	p.G565S	TGGTGCCGTGGAA	.	167	90	86	0	.	32	18	14	0	0	T	139726084	C	T	139726084	3	4	49	1	0	0	0	0	1	0	0	0	11486	652	23	1	420	1	PARP12	7	139726084	Missense_Mutation	SNP	C	TCGA-OR-A5LB-01A-11D-A29I-10	6766188	139726084	19412579	109	9813										
MLL3	58508	broad.mit.edu;bcgsc.ca	37	chr7	151878058	151878058	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	gagactgatcatagggatcaCgggcagcagatggggaaaca	15	7	2	3	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	MLL3-1398	NM_170606	exon36	c.G6887A	p.R2296H	GGATCACGGGCAG	.	424	11	174	0	.	3	3	0	0	0	T	151878058	C	T	151878058	3	4	49	1	0	0	0	0	1	0	0	0	9650	536	19	1	7944	1	MLL3	7	151878058	Missense_Mutation	SNP	C	TCGA-OR-A5LB-01A-11D-A29I-10	12151974	151878058	7260605	110	9814										
MLL3	58508	broad.mit.edu	37	chr7	151879078	151879078	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	aggggtcattatttgtcgtgGaagaagaacataaatctctg	11	5	2	2	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	MLL3-1398	NM_170606	exon36	c.C5867T	p.S1956F	GTCGTGGAAGAAG	.	241	6	103	0	.	3	3	0	0	0	A	151879078	G	A	151879078	3	1	49	1	0	0	0	0	1	0	0	0	9650	1174	41	3	8964	3	MLL3	7	151879078	Missense_Mutation	SNP	G	TCGA-OR-A5LB-01A-11D-A29I-10	1020	151879078	7259585	111	9815										
WDR60	55112	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	158738347	158738347	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	gccctggtgctggccagggcGtctggctccatcgacatcca	13	15	1	0	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	WDR60-92	NM_018051	exon25	c.G3078A	p.A1026A	CAGGGCGTCTGGC	.	213	91	64	0	.	19	9	10	0	0	A	158738347	G	A	158738347	2	1	49	1	0	0	0	0	0	0	0	1	17349	1132	40	1		1	WDR60	7	158738347	Silent	SNP	G	TCGA-OR-A5LB-01A-11D-A29I-10	6859269	158738347	400316	112	9816										
MYOM2	9172	bcgsc.ca	37	chr8	2021421	2021421	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	gtgttaacgctctttcagacGtgctgttgaaagagtccaag	11	8	2	3	rs2272720	byfrequency	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	MYOM2-95	NM_003970	exon10	c.G961T	p.V321L	TCAGACGTGCTGT	.	154	5	100	0	G|0.687;T|0.313	0	0	0	0	0	T	2021421	G	T	2021421	3	4	49	1	0	0	0	0	1	0	0	0	10120	1145	40	2	995	2	MYOM2	8	2021421	Missense_Mutation	SNP	G	TCGA-OR-A5LB-01A-11D-A29I-10		2021421	144342601	113	9817										
DEFB135	613209	broad.mit.edu;bcgsc.ca	37	chr8	11839860	11839860	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	ggagcgtcctcttggccctcGtggtccttaacttactcttc	9	14	2	0	rs141141605		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	DEFB135-68	NM_001033017	exon1	c.G31A	p.V11M	GCCCTCGTGGTCC	.	83	75	88	2	G|0.999;A|0.001	0	0	0	0	0	A	11839860	G	A	11839860	3	1	49	1	0	0	0	0	1	0	0	0	4430	1145	40	1	33	1	DEFB135	8	11839860	Missense_Mutation	SNP	G	TCGA-OR-A5LB-01A-11D-A29I-10	9818439	11839860	134524162	114	9818										
HOOK3	84376	ucsc.edu	37	chr8	42819577	42819577	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	caggaagaaggcatttgcagCtccagactcaattagaacag	10	9	1	3	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	HOOK3-154	NM_032410	exon9	c.C739A	p.L247I	TTGCAGCTCCAGA	.	45	4	47	0	.	2	2	0	0	0	A	42819577	C	A	42819577	3	1	49	1	0	0	0	0	1	0	0	0	7305	797	28	3	773	3	HOOK3	8	42819577	Missense_Mutation	SNP	C	TCGA-OR-A5LB-01A-11D-A29I-10	30979717	42819577	103544445	115	9819										
MYBL1	4603	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr8	67511292	67511294	+	In_Frame_Del	DEL	TCT	TCT	-													0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	atgaacacattaccctctgaTcttcttctttagtccaagga					novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	TCT	TCT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	MYBL1-395	NM_001080416	exon4	c.282_284del	p.94_95del	CTCTGATCTTCTT	.	46	34	38	0	.	0	0	0	0	0	-	67511294	TCT	-	67511292	7	5	49	1	0	1	0	1	0	0	0	0	10037	1435	50	0	2026	0	MYBL1	8	67511292	In_Frame_Del	DEL	TCT	TCGA-OR-A5LB-01A-11D-A29I-10	24691715	67511292	78852730	116	9820										
PABPC1	26986	broad.mit.edu	37	chr8	101724606	101724606	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	ttacctttgcactagtgattGtaccaaatggagaaaactct	7	8	1	2	rs202060459		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	PABPC1-68	NM_002568	exon7	c.C956T	p.T319I	GTGATTGTACCAA	.	116	3	117	1	.	352	351	0	1	0	A	101724606	G	A	101724606	3	1	49	1	0	0	0	0	1	0	0	0	11392	1377	48	3	986	3	PABPC1	8	101724606	Missense_Mutation	SNP	G	TCGA-OR-A5LB-01A-11D-A29I-10	34213314	101724606	44639416	117	9821										
UBR5	51366	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	103297940	103297940	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	aagcagctgctgcagctgcaGcacttgtactgatggtacca	11	11	0	1	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	UBR5-761	NM_015902	exon39	c.C5285A	p.A1762D	GCTGCAGCACTTG	.	137	123	103	1	.	1	0	1	0	0	T	103297940	G	T	103297940	3	4	49	1	0	0	0	0	1	0	0	0	16943	971	34	3	3198	3	UBR5	8	103297940	Missense_Mutation	SNP	G	TCGA-OR-A5LB-01A-11D-A29I-10	1573334	103297940	43066082	118	9822										
TYRP1	7306	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr9	12704553	12704553	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	tgaccccacgggaaagtatgAccctgctgttcgaagtcttc	10	12	1	2	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	TYRP1-226	NM_000550	exon6	c.A1109G	p.D370G	AGTATGACCCTGC	.	46	45	46	1	.	0	0	0	0	0	G	12704553	A	G	12704553	3	3	49	1	0	0	0	0	1	0	0	0	16854	275	10	4	1127	4	TYRP1	9	12704553	Missense_Mutation	SNP	A	TCGA-OR-A5LB-01A-11D-A29I-10		12704553	128508878	119	9823										
NUDT2	318	hgsc.bcm.edu	37	chr9	34339072	34339072	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	atgtggcttgatcatcttccGaagatgcctcattcccaaag	8	11	3	2	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	NUDT2-90	NM_147173	exon3	c.G35T	p.R12L	TCTTCCGAAGATG	.	100	6	82	0	.	37	37	0	0	0	T	34339072	G	T	34339072	3	4	49	1	0	0	0	0	1	0	0	0	10766	1058	37	2	37	2	NUDT2	9	34339072	Missense_Mutation	SNP	G	TCGA-OR-A5LB-01A-11D-A29I-10	21634519	34339072	106874359	120	9824										
CCIN	881	hgsc.bcm.edu;broad.mit.edu	37	chr9	36170452	36170452	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	agacatgccctatcgggcagCagcacttagtgccacctctg	10	14	1	1	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	CCIN-92	NM_005893	exon1	c.C953A	p.A318E	GGGCAGCAGCACT	.	74	4	66	0	.	0	0	0	0	0	A	36170452	C	A	36170452	3	1	49	1	0	0	0	0	1	0	0	0	2884	710	25	3	955	3	CCIN	9	36170452	Missense_Mutation	SNP	C	TCGA-OR-A5LB-01A-11D-A29I-10	1831380	36170452	105042979	121	9825										
C9orf41	138199	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr9	77613553	77613553	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	ttgaaaatctcctgctgtcaTagaaaagttagaaccaggag	9	7	2	3	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	C9orf41-92	NM_152420	exon5	c.A871G	p.M291V	CTGTCATAGAAAA	.	240	108	138	0	.	7	5	2	0	0	C	77613553	T	C	77613553	3	2	49	1	0	0	0	0	1	0	0	0	2488	1406	49	4	374	4	C9orf41	9	77613553	Missense_Mutation	SNP	T	TCGA-OR-A5LB-01A-11D-A29I-10	41443101	77613553	63599878	122	9826										
SECISBP2	79048	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr9	91949587	91949587	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	tagtataccatcttctgaagCtttatcttcggatccttcct	5	11	3	1	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	SECISBP2-93	NM_024077	exon7	c.C1031T	p.A344V	CTGAAGCTTTATC	.	117	43	81	0	.	37	13	24	0	0	T	91949587	C	T	91949587	3	4	49	1	0	0	0	0	1	0	0	0	14041	797	28	3	1057	3	SECISBP2	9	91949587	Missense_Mutation	SNP	C	TCGA-OR-A5LB-01A-11D-A29I-10	14336034	91949587	49263844	123	9827										
CDK5RAP2	55755	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr9	123290085	123290085	+	Frame_Shift_Del	DEL	T	T	-													0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	tcaagtgtatcagacataccTttttttcctttgattttaat					novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	CDK5RAP2-229	NM_018249	exon10	c.998delA	p.K333fs	CATACCTTTTTTT	.	53	26	28	0	.	0	0	0	0	0	-	123290085	T	-	123290085	7	5	49	1	0	1	0	1	0	0	0	0	3152	1623	56	0	4799	0	CDK5RAP2	9	123290085	Frame_Shift_Del	DEL	T	TCGA-OR-A5LB-01A-11D-A29I-10	31340498	123290085	17923346	124	9828										
NR5A1	2516	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr9	127253373	127253375	+	In_Frame_Del	DEL	GAT	GAT	-													0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	cactcacccaggctgaagagGatgatgaacttgaggcagac					novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	GAT	GAT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	NR5A1-186	NM_004959	exon6	c.1123_1125del	p.375_375del	GAAGAGGATGATG	.	240	106	98	0	.	0	0	0	0	0	-	127253375	GAT	-	127253373	7	5	49	1	0	1	0	1	0	0	0	0	10664	1164	41	0	268	0	NR5A1	9	127253373	In_Frame_Del	DEL	GAT	TCGA-OR-A5LB-01A-11D-A29I-10	3963288	127253373	13960058	125	9829										
GOLGA1	2800	ucsc.edu;bcgsc.ca	37	chr9	127674275	127674275	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	ctcttgcaaatgtgtgataaCgtcttctttctcttgagttt	7	8	4	2	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	GOLGA1-91	NM_002077	exon11	c.G874A	p.V292I	TGATAACGTCTTC	.	214	117	106	2	.	11	7	4	0	0	T	127674275	C	T	127674275	3	4	49	1	0	0	0	0	1	0	0	0	6571	536	19	1	1481	1	GOLGA1	9	127674275	Missense_Mutation	SNP	C	TCGA-OR-A5LB-01A-11D-A29I-10	420902	127674275	13539156	126	9830										
GAPVD1	26130	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr9	128069806	128069806	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	gaactgtggtttatataaccTacagtcagcttattactctg	7	8	2	0	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	GAPVD1-93	NM_015635	exon5	c.T1231C	p.Y411H	ATAACCTACAGTC	.	82	6	59	0	.	4	4	0	0	0	C	128069806	T	C	128069806	3	2	49	1	0	0	0	0	1	0	0	0	6259	1522	53	4	1245	4	GAPVD1	9	128069806	Missense_Mutation	SNP	T	TCGA-OR-A5LB-01A-11D-A29I-10	395531	128069806	13143625	127	9831										
GOLGA2	2801	hgsc.bcm.edu;broad.mit.edu	37	chr9	131022875	131022875	+	Frame_Shift_Del	DEL	C	C	-													0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	cctgcgcgcctccgcctgctCcccccagagctcggccgccc					novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	GOLGA2-91	NM_004486	exon17	c.1546delG	p.E516fs	CCTGCTCCCCCCA	.	127	19	31	0	.	0	0	0	0	0	-	131022875	C	-	131022875	7	5	49	1	0	1	0	1	0	0	0	0	6572	864	30	0	1502	0	GOLGA2	9	131022875	Frame_Shift_Del	DEL	C	TCGA-OR-A5LB-01A-11D-A29I-10	2953069	131022875	10190556	128	9832										
C9orf96	169436	hgsc.bcm.edu;bcgsc.ca	37	chr9	136262309	136262311	+	In_Frame_Del	DEL	CTT	CTT	-													0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	agggacgtggtgcacatcacCttcttgagaggctccttcaa					novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	CTT	CTT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	C9orf96-334	NM_153710	exon10	c.885_887del	p.295_296del	CATCACCTTCTTG	.	252	103	116	1	.	0	0	0	0	0	-	136262311	CTT	-	136262309	7	5	49	1	0	1	0	1	0	0	0	0	2514	668	24	0	923	0	C9orf96	9	136262309	In_Frame_Del	DEL	CTT	TCGA-OR-A5LB-01A-11D-A29I-10	5239434	136262309	4951122	129	9833										
ADAMTS13	11093	broad.mit.edu;bcgsc.ca	37	chr9	136303424	136303424	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	atgggacaggtgccaggtgtGtggtggggacaacagcacgt	18	7	0	0	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	ADAMTS13-229	NM_139027	exon14	c.G1643A	p.C548Y	AGGTGTGTGGTGG	.	314	12	160	0	.	3	3	0	0	0	A	136303424	G	A	136303424	3	1	49	1	0	0	0	0	1	0	0	0	258	1377	48	3	1697	3	ADAMTS13	9	136303424	Missense_Mutation	SNP	G	TCGA-OR-A5LB-01A-11D-A29I-10	41115	136303424	4910007	130	9834										
BRD3	8019	broad.mit.edu;bcgsc.ca	37	chr9	136918407	136918407	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	cggcaggttcaatttgattgCgtccacgggctggtagaagg	15	8	1	2	rs200965087		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	BRD3-377	NM_007371	exon2	c.G193A	p.A65T	TGATTGCGTCCAC	.	125	59	65	3	C|0.999;T|0.000	8	2	6	0	0	T	136918407	C	T	136918407	3	4	49	1	0	0	0	0	1	0	0	0	1506	768	27	1	2031	1	BRD3	9	136918407	Missense_Mutation	SNP	C	TCGA-OR-A5LB-01A-11D-A29I-10	614983	136918407	4295024	131	9835										
FCN2	2220	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr9	137777089	137777089	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	cgggttcccttcccaggcccGcgtacctgcaaggacctgct	11	17	0	0	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	FCN2-153	NM_004108	exon5	c.G306A	p.P102P	AGGCCCGCGTACC	.	181	98	94	1	.	0	0	0	0	0	A	137777089	G	A	137777089	2	1	49	1	0	0	0	0	0	0	0	1	5811	1074	38	1		1	FCN2	9	137777089	Silent	SNP	G	TCGA-OR-A5LB-01A-11D-A29I-10	858682	137777089	3436342	132	9836										
KCNT1	57582	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	138662903	138662903	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	gcaggggctgcacgagggtcCggcccgcctgcccgtgcaca	16	16	0	0	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	KCNT1-137	NM_020822	exon18	c.C1970T	p.P657L	AGGGTCCGGCCCG	.	258	139	94	1	.	1	0	1	0	0	T	138662903	C	T	138662903	3	4	49	1	0	0	0	0	1	0	0	0	8112	652	23	1	2040	1	KCNT1	9	138662903	Missense_Mutation	SNP	C	TCGA-OR-A5LB-01A-11D-A29I-10	885814	138662903	2550528	133	9837										
KCNT1	57582	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr9	138669186	138669186	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	tccagcatctgcccccagggCtgcaagcacaacagctatga	9	15	1	1	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	KCNT1-137	NM_020822	exon21	c.C2352T	p.G784G	CCAGGGCTGCAAG	.	464	42	230	0	.	0	0	0	0	0	T	138669186	C	T	138669186	2	4	49	1	0	0	0	0	0	0	0	1	8112	784	28	3		3	KCNT1	9	138669186	Silent	SNP	C	TCGA-OR-A5LB-01A-11D-A29I-10	6283	138669186	2544245	134	9838										
GRIN1	2902	broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr9	140055846	140055846	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	ggtgcacctggtggcagatgGcaagttcggcacacaggagc	16	10	0	1	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	GRIN1-187	NM_001185091	exon11	c.G1508A	p.G503D	CAGATGGCAAGTT	.	674	100	269	1	.	0	0	0	0	0	A	140055846	G	A	140055846	3	1	49	1	0	0	0	0	1	0	0	0	6799	1203	42	3	1550	3	GRIN1	9	140055846	Missense_Mutation	SNP	G	TCGA-OR-A5LB-01A-11D-A29I-10	1386660	140055846	1157585	135	9839										
TMEM203	94107	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr9	140099815	140099815	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	cagcaggtgcacgaagatctCgaaggtggcgaagcctagcc	14	11	1	1	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	TMEM203-22	NM_053045	exon1	c.G52T	p.E18X	AGATCTCGAAGGT	.	604	184	172	0	.	85	63	22	0	0	A	140099815	C	A	140099815	4	1	49	1	0	0	0	0	0	1	0	0	16165	893	31	2	362	2	TMEM203	9	140099815	Nonsense_Mutation	SNP	C	TCGA-OR-A5LB-01A-11D-A29I-10	43969	140099815	1113616	136	9840										
CACNA1B	774	broad.mit.edu;bcgsc.ca	37	chr9	141015261	141015261	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	tttgggggccgtgagcccccGaagcccaagccctccctcag	12	17	1	1	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	CACNA1B-138	NM_001243812	exon45	c.G6417A	p.P2139P	GCCCCCGAAGCCC	.	219	84	70	2	.	2	1	1	0	0	A	141015261	G	A	141015261	2	1	49	1	0	0	0	0	0	0	0	1	2545	1045	37	1		1	CACNA1B	9	141015261	Silent	SNP	G	TCGA-OR-A5LB-01A-11D-A29I-10	915446	141015261	198170	137	9841										
IDI1	3422	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr10	1088637	1088637	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	tgctcgcctcactccaagggCgtcactttcctcaagctcgg	9	16	3	0	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	IDI1-90	NM_004508	exon4	c.G472T	p.A158S	CAAGGGCGTCACT	.	196	32	94	1	.	443	366	76	0	1	A	1088637	C	A	1088637	3	1	49	1	0	0	0	0	1	0	0	0	7520	768	27	2	390	2	IDI1	10	1088637	Missense_Mutation	SNP	C	TCGA-OR-A5LB-01A-11D-A29I-10		1088637	134446110	138	9842										
FBXO18	84893	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr10	5948345	5948345	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	ggccaggcaagaagcagaggAcagtacgtctcggctctctg	14	11	2	2	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	FBXO18-228	NM_032807	exon4	c.A656G	p.D219G	CAGAGGACAGTAC	.	464	99	225	0	.	15	11	4	0	0	G	5948345	A	G	5948345	3	3	49	1	0	0	0	0	1	0	0	0	5750	275	10	4	675	4	FBXO18	10	5948345	Missense_Mutation	SNP	A	TCGA-OR-A5LB-01A-11D-A29I-10	4859708	5948345	129586402	139	9843										
SFMBT2	57713	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr10	7269870	7269870	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	cccatgctgcttgtgataatCtgcccagtcgaagtcctggc	10	13	1	1	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	SFMBT2-141	NM_001029880	exon10	c.G1150C	p.D384H	GATAATCTGCCCA	.	108	59	54	0	.	0	0	0	0	0	G	7269870	C	G	7269870	3	3	49	1	0	0	0	0	1	0	0	0	14193	913	32	3	1582	3	SFMBT2	10	7269870	Missense_Mutation	SNP	C	TCGA-OR-A5LB-01A-11D-A29I-10	1321525	7269870	128264877	140	9844										
TAF3	83860	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	chr10	8051255	8051255	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	gggccagtgccaaagcccccGtgcgcagcgtggtgactgag	16	13	0	2	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	TAF3-69	NM_031923	exon5	c.G2530A	p.V844M	GCCCCCGTGCGCA	.	75	37	17	0	.	15	5	10	0	0	A	8051255	G	A	8051255	3	1	49	1	0	0	0	0	1	0	0	0	15562	1145	40	1	2548	1	TAF3	10	8051255	Missense_Mutation	SNP	G	TCGA-OR-A5LB-01A-11D-A29I-10	781385	8051255	127483492	141	9845										
KIAA1217	56243	hgsc.bcm.edu;ucsc.edu	37	chr10	24783527	24783527	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	tacaagttatagcaaagatgCgtctaggtaaaaaagaagaa	9	4	1	3	rs148941784	byfrequency	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	KIAA1217-98	NM_019590	exon7	c.C1778T	p.A593V	AAGATGCGTCTAG	.	56	6	19	0	C|0.999;T|0.001	0	0	0	0	0	T	24783527	C	T	24783527	3	4	49	1	0	0	0	0	1	0	0	0	8237	768	27	1	1804	1	KIAA1217	10	24783527	Missense_Mutation	SNP	C	TCGA-OR-A5LB-01A-11D-A29I-10	16732272	24783527	110751220	142	9846										
PTCHD3	374308	hgsc.bcm.edu;broad.mit.edu	37	chr10	27687470	27687470	+	Frame_Shift_Del	DEL	T	T	-													0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	gatttttatctacatagacaTttttttcaaaaattttagta					novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	PTCHD3-94	NM_001034842	exon4	c.2057delA	p.N686fs	TAGACATTTTTTT	.	33	12	17	0	.	0	0	0	0	0	-	27687470	T	-	27687470	7	5	49	1	0	1	0	1	0	0	0	0	12766	1493	52	0	250	0	PTCHD3	10	27687470	Frame_Shift_Del	DEL	T	TCGA-OR-A5LB-01A-11D-A29I-10	2903943	27687470	107847277	143	9847										
ZNF25	219749	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr10	38241708	38241710	+	In_Frame_Del	DEL	AGA	AGA	-													0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	catgaggtatgccttcacatAgaagaacttcccacattcag					novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	AGA	AGA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	ZNF25-154	NM_145011	exon6	c.716_718del	p.239_240del	TCACATAGAAGAA	.	195	74	117	0	.	0	0	0	0	0	-	38241710	AGA	-	38241708	7	5	49	1	0	1	0	1	0	0	0	0	17831	420	15	0	656	0	ZNF25	10	38241708	In_Frame_Del	DEL	AGA	TCGA-OR-A5LB-01A-11D-A29I-10	10554238	38241708	97293039	144	9848										
RASSF4	83937	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr10	45484790	45484790	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	aacagcaccatgacaaccctGcaggtgctcaccctgctgct	8	16	1	1	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	RASSF4-290	NM_032023	exon7	c.G600A	p.L200L	AACCCTGCAGGTG	.	299	148	162	0	.	3	2	1	0	0	A	45484790	G	A	45484790	2	1	49	1	0	0	0	0	0	0	0	1	13123	1306	46	3		3	RASSF4	10	45484790	Silent	SNP	G	TCGA-OR-A5LB-01A-11D-A29I-10	7243082	45484790	90049957	145	9849										
NCOA4	8031	broad.mit.edu	37	chr10	51579175	51579175	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	aagaccagagtggcagctccAgtaatagagaaccccttttg	10	10	0	3	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	NCOA4-1042	NM_001145261	exon3	c.A82C	p.S28R	AGCTCCAGTAATA	.	90	10	45	0	.	16	15	1	0	0	C	51579175	A	C	51579175	3	2	49	1	0	0	0	0	1	0	0	0	10260	188	7	5	88	5	NCOA4	10	51579175	Missense_Mutation	SNP	A	TCGA-OR-A5LB-01A-11D-A29I-10	6094385	51579175	83955572	146	9850										
PCDH15	65217	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr10	56423995	56423995	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	gatgatccctgaagctaaacAtgtccagagataaaactgtc	8	9	0	3	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	PCDH15-193	NM_001142763	exon2	c.T28G	p.C10G	CTAAACATGTCCA	.	108	51	44	0	.	0	0	0	0	0	C	56423995	A	C	56423995	3	2	49	1	0	0	0	0	1	0	0	0	11540	217	8	5	7630	5	PCDH15	10	56423995	Missense_Mutation	SNP	A	TCGA-OR-A5LB-01A-11D-A29I-10	4844820	56423995	79110752	147	9851										
EGR2	1959	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr10	64573625	64573625	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	gtggagtgagtggagggggcAcccgcagggtgtccagtggg	22	7	0	1	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	EGR2-92	NM_000399	exon2	c.T773C	p.V258A	GGGGGCACCCGCA	.	146	62	108	0	.	0	0	0	0	0	G	64573625	A	G	64573625	3	3	49	1	0	0	0	0	1	0	0	0	4983	159	6	4	661	4	EGR2	10	64573625	Missense_Mutation	SNP	A	TCGA-OR-A5LB-01A-11D-A29I-10	8149630	64573625	70961122	148	9852										
UNC5B	219699	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr10	73046620	73046620	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	gcaccactgccaccgtcatcGtctacggtgcgggcctttcg	11	16	2	0	rs143653939	byfrequency	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	UNC5B-228	NM_001244889	exon5	c.G727A	p.V243I	GTCATCGTCTACG	.	274	126	160	1	G|0.999;A|0.001	0	0	0	0	0	A	73046620	G	A	73046620	3	1	49	1	0	0	0	0	1	0	0	0	17030	1145	40	1	745	1	UNC5B	10	73046620	Missense_Mutation	SNP	G	TCGA-OR-A5LB-01A-11D-A29I-10	8472995	73046620	62488127	149	9853										
MYOF	26509	broad.mit.edu;bcgsc.ca	37	chr10	95191176	95191176	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	aacactcaccccagtatcttGccctttttcatttagcaggg	6	13	3	0	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	MYOF-93	NM_133337	exon4	c.C334A	p.Q112K	TATCTTGCCCTTT	.	225	8	152	0	.	0	0	0	0	0	T	95191176	G	T	95191176	3	4	49	1	0	0	0	0	1	0	0	0	10117	1328	46	3	6055	3	MYOF	10	95191176	Missense_Mutation	SNP	G	TCGA-OR-A5LB-01A-11D-A29I-10	22144556	95191176	40343571	150	9854										
GBF1	8729	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	104136514	104136514	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	cctgacaactttgagctctgCgtcaagactctccggatctt	8	13	4	3	rs139000128		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	GBF1-91	NM_001199378	exon32	c.C4245T	p.C1415C	GCTCTGCGTCAAG	.	40	6	30	1	C|1.000;T|0.000	57	47	10	0	0	T	104136514	C	T	104136514	2	4	49	1	0	0	0	0	0	0	0	1	6291	776	27	1		1	GBF1	10	104136514	Silent	SNP	C	TCGA-OR-A5LB-01A-11D-A29I-10	8945338	104136514	31398233	151	9855										
C10orf95	79946	hgsc.bcm.edu	37	chr10	104210735	104210735	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	tcccgggccggctgcggaagCtgtgggcctggactgggggt	20	11	0	0	rs2281878	byfrequency	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	C10orf95-91	NM_024886	exon2	c.G253T	p.A85S	CGGAAGCTGTGGG	.	4	4	0	0	C|0.759;A|0.241	1	1	0	0	0	A	104210735	C	A	104210735	3	1	49	1	0	0	0	0	1	0	0	0	1630	797	28	3	524	3	C10orf95	10	104210735	Missense_Mutation	SNP	C	TCGA-OR-A5LB-01A-11D-A29I-10	74221	104210735	31324012	152	9856										
CALHM1	255022	bcgsc.ca	37	chr10	105215373	105215373	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	gtgcacgtctcgtcgaagagCttgcgctcgatgtcgatata	12	10	1	1	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	CALHM1-91	NM_001001412	exon2	c.G687A	p.K229K	GAAGAGCTTGCGC	.	323	152	156	4	.	0	0	0	0	0	T	105215373	C	T	105215373	2	4	49	1	0	0	0	0	0	0	0	1	2588	796	28	3		3	CALHM1	10	105215373	Silent	SNP	C	TCGA-OR-A5LB-01A-11D-A29I-10	1004638	105215373	30319374	153	9857										
ADRA2A	150	broad.mit.edu	37	chr10	112839104	112839104	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	ttcaaccacgatttccgccgCgccttcaagaagatcctctg	7	15	3	2	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	ADRA2A-90	NM_000681	exon1	c.C1350T	p.R450R	CCGCCGCGCCTTC	.	190	5	86	1	.	33	32	1	0	0	T	112839104	C	T	112839104	2	4	49	1	0	0	0	0	0	0	0	1	337	755	27	1		1	ADRA2A	10	112839104	Silent	SNP	C	TCGA-OR-A5LB-01A-11D-A29I-10	7623731	112839104	22695643	154	9858										
C10orf118	55088	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	115904312	115904312	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	tgcccactttactttgatgaCgtgagagttaatgtcttcct	8	9	1	3	rs201374071		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	C10orf118-92	NM_018017	exon6	c.G1165A	p.V389I	TGATGACGTGAGA	.	238	35	120	0	C|0.999;T|0.000	3	3	0	0	0	T	115904312	C	T	115904312	3	4	49	1	0	0	0	0	1	0	0	0	1591	536	19	1	1575	1	C10orf118	10	115904312	Missense_Mutation	SNP	C	TCGA-OR-A5LB-01A-11D-A29I-10	3065208	115904312	19630435	155	9859										
PNLIPRP3	119548	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr10	118220558	118220558	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	cggatgccaactttgttgacGttattcatacaaatgcagct	8	9	1	1	rs114674677	byfrequency	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	PNLIPRP3-91	NM_001011709	exon6	c.G646A	p.V216I	GTTGACGTTATTC	.	182	80	106	0	G|0.999;A|0.001	1	1	0	0	0	A	118220558	G	A	118220558	3	1	49	1	0	0	0	0	1	0	0	0	12181	1145	40	1	668	1	PNLIPRP3	10	118220558	Missense_Mutation	SNP	G	TCGA-OR-A5LB-01A-11D-A29I-10	2316246	118220558	17314189	156	9860										
PRLHR	2834	broad.mit.edu	37	chr10	120354224	120354224	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	cccagatggccagcacagcgTaggcgctgaggcgcagcgag	16	13	0	2	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	PRLHR-90	NM_004248	exon2	c.A533G	p.Y178C	ACAGCGTAGGCGC	.	21	4	8	0	.	0	0	0	0	0	C	120354224	T	C	120354224	3	2	49	1	0	0	0	0	1	0	0	0	12562	1638	57	4	583	4	PRLHR	10	120354224	Missense_Mutation	SNP	T	TCGA-OR-A5LB-01A-11D-A29I-10	2133666	120354224	15180523	157	9861										
FAM45A	404636	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	120879946	120879946	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	gtatcaccccaagatagaagCggtccaggagttcaccaggt	11	11	2	2	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	FAM45A-91	NM_207009	exon5	c.C575T	p.A192V	TAGAAGCGGTCCA	.	517	102	273	2	.	19	15	4	0	0	T	120879946	C	T	120879946	3	4	49	1	0	0	0	0	1	0	0	0	5583	768	27	1	593	1	FAM45A	10	120879946	Missense_Mutation	SNP	C	TCGA-OR-A5LB-01A-11D-A29I-10	525722	120879946	14654801	158	9862										
DOCK1	1793	ucsc.edu;bcgsc.ca	37	chr10	128830513	128830513	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	caagagcatgcagagccttgGgagctgcaccattagcaagg	13	10	0	2	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	DOCK1-698	NM_001380	exon18	c.G1778A	p.G593E	GCCTTGGGAGCTG	.	620	277	286	2	.	5	0	5	0	0	A	128830513	G	A	128830513	3	1	49	1	0	0	0	0	1	0	0	0	4695	1232	43	3	1848	3	DOCK1	10	128830513	Missense_Mutation	SNP	G	TCGA-OR-A5LB-01A-11D-A29I-10	7950567	128830513	6704234	159	9863										
PWWP2B	170394	broad.mit.edu	37	chr10	134218800	134218800	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	cgccccagggcaagggagagGtggtcaagatcccctcccgc	14	15	1	2	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	PWWP2B-90	NM_001098637	exon2	c.G796A	p.V266M	GGAGAGGTGGTCA	.	344	8	103	0	.	48	47	1	0	0	A	134218800	G	A	134218800	3	1	49	1	0	0	0	0	1	0	0	0	12881	1261	44	3	802	3	PWWP2B	10	134218800	Missense_Mutation	SNP	G	TCGA-OR-A5LB-01A-11D-A29I-10	5388287	134218800	1315947	160	9864										
KRTAP5-5	439915	broad.mit.edu	37	chr11	1651158	1651169	+	In_Frame_Del	DEL	GGCTGTGGCTCT	GGCTGTGGCTCT	-													0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	gctgtggctccggctgtggaGgctgtggctctggctgtggg					novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	KRTAP5-5-23	NM_001001480	exon1	c.88_99del	p.30_33del	TGTGGAGGCTGTG	.	72	7	17	0	.	0	0	0	0	0	-	1651169	GGCTGTGGCTCT	-	1651158	7	5	49	1	0	1	0	1	0	0	0	0	8586	1000	35	0	90	0	KRTAP5-5	11	1651158	In_Frame_Del	DEL	GGCTGTGGCTCT	TCGA-OR-A5LB-01A-11D-A29I-10		1651158	133355358	161	9865										
SYT8	90019	hgsc.bcm.edu;ucsc.edu	37	chr11	1858479	1858479	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	tgccgctccgaactgagcccGtaggcaaggtgcacctgggt	14	13	0	1	rs138799724	byfrequency	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	SYT8-91	NM_138567	exon9	c.G1024A	p.V342I	GAGCCCGTAGGCA	.	24	11	17	0	G|0.998;A|0.002	0	0	0	0	0	A	1858479	G	A	1858479	3	1	49	1	0	0	0	0	1	0	0	0	15517	1145	40	1	1058	1	SYT8	11	1858479	Missense_Mutation	SNP	G	TCGA-OR-A5LB-01A-11D-A29I-10	207321	1858479	133148037	162	9866										
TRIM21	6737	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr11	4409704	4409705	+	Frame_Shift_Ins	INS	-	-	T													0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	gttcttcttcaaccaggaagINStttttttgctgcacaaactc					novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	TRIM21-229	NM_003141	exon4	c.561_562insA	p.N187fs	CAGGAAGTTTTTT	.	32	21	50	0	.	0	0	0	0	0	T	4409705	-	T	4409704	7	5	49	1	0	1	1	0	0	0	0	0	16533	1020	36	0	882	0	TRIM21	11	4409704	Frame_Shift_Ins	INS	-	TCGA-OR-A5LB-01A-11D-A29I-10	2551225	4409704	130596812	163	9867										
DNHD1	144132	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	6550209	6550209	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	cctcagaagctggaagacatGagaggtggtcccatcaagaa	12	9	2	4	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	DNHD1-24	NM_144666	exon12	c.G2205A	p.M735I	AGACATGAGAGGT	.	149	128	142	2	.	0	0	0	0	0	A	6550209	G	A	6550209	3	1	49	1	0	0	0	0	1	0	0	0	4679	1290	45	3	2252	3	DNHD1	11	6550209	Missense_Mutation	SNP	G	TCGA-OR-A5LB-01A-11D-A29I-10	2140505	6550209	128456307	164	9868										
RNF141	50862	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr11	10540661	10540663	+	In_Frame_Del	DEL	CTC	CTC	-													0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	ccatccatacagatacaacaCtcctcctcatcggtcagctg					novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	CTC	CTC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	RNF141-226	NM_016422	exon5	c.460_462del	p.154_154del	ACAACACTCCTCC	.	44	35	34	0	.	0	0	0	0	0	-	10540663	CTC	-	10540661	7	5	49	1	0	1	0	1	0	0	0	0	13479	564	20	0	238	0	RNF141	11	10540661	In_Frame_Del	DEL	CTC	TCGA-OR-A5LB-01A-11D-A29I-10	3990452	10540661	124465855	165	9869										
KCNJ11	3767	bcgsc.ca	37	chr11	17409071	17409071	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	gaggcggccgtggcgcagggCgatcaccgcatgcttgctga	17	12	1	1	rs77131926		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	KCNJ11-91	NM_000525	exon1	c.G568A	p.A190T	GCAGGGCGATCAC	.	93	82	107	3	C|0.999;T|0.001	0	0	0	0	0	T	17409071	C	T	17409071	3	4	49	1	0	0	0	0	1	0	0	0	8066	768	27	1	608	1	KCNJ11	11	17409071	Missense_Mutation	SNP	C	TCGA-OR-A5LB-01A-11D-A29I-10	6868410	17409071	117597445	166	9870										
ABCC8	6833	bcgsc.ca	37	chr11	17452492	17452492	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	gcctctttgaagaagctgacGtggcccacgaaagtctgtgg	13	10	2	3	rs1799857	byfrequency	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	ABCC8-91	NM_000352	exon12	c.C1686T	p.H562H	GCTGACGTGGCCC	.	182	7	156	1	G|0.566;A|0.434	0	0	0	0	0	A	17452492	G	A	17452492	2	1	49	1	0	0	0	0	0	0	0	1	58	1136	40	1		1	ABCC8	11	17452492	Silent	SNP	G	TCGA-OR-A5LB-01A-11D-A29I-10	43421	17452492	117554024	167	9871										
HPS5	11234	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	18303703	18303703	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	gactcctggggggctggcctCgtgctcttgctctgtatgag	15	11	2	1	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	HPS5-133	NM_181507	exon22	c.G3123A	p.T1041T	TGGCCTCGTGCTC	.	72	66	85	0	.	14	0	14	0	0	T	18303703	C	T	18303703	2	4	49	1	0	0	0	0	0	0	0	1	7363	871	31	1		1	HPS5	11	18303703	Silent	SNP	C	TCGA-OR-A5LB-01A-11D-A29I-10	851211	18303703	116702813	168	9872										
BDNF	627	ucsc.edu;bcgsc.ca	37	chr11	27681195	27681195	+	Splice_Site	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	tctgtgtgtgtgtgtgtgtgTgcgcgcgcgcgtgtgcgcgc	19	9	1	0	rs28405820		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	BDNF-514	.	.	.	.	TGTGTGTGCGCGC	.	38	34	39	1	.	3	3	0	0	0	C	27681195	T	C	27681195	5	2	49	1	0	0	0	0	0	0	1	0	1395	1710	59	4		4	BDNF	11	27681195	Splice_Site	SNP	T	TCGA-OR-A5LB-01A-11D-A29I-10	9377492	27681195	107325321	169	9873										
SLC39A13	91252	broad.mit.edu	37	chr11	47433996	47433996	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	ggagaagatgttcctggacaGcaaggaggaggggaccagcc	17	8	0	2	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	SLC39A13-90	NM_152264	exon4	c.G515A	p.S172N	TGGACAGCAAGGA	.	129	4	141	0	.	31	31	0	0	0	A	47433996	G	A	47433996	3	1	49	1	0	0	0	0	1	0	0	0	14651	971	34	3	525	3	SLC39A13	11	47433996	Missense_Mutation	SNP	G	TCGA-OR-A5LB-01A-11D-A29I-10	19752801	47433996	87572520	170	9874										
PGA5	5222	ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	61018642	61018642	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	agtggcttccagggcatgaaCgtccccaccgaatctggaga	12	12	1	2	rs12280940	byfrequency	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	PGA5-91	NM_014224	exon9	c.C1056T	p.N352N	CATGAACGTCCCC	.	524	103	462	1	C|0.912;T|0.088	0	0	0	0	0	T	61018642	C	T	61018642	2	4	49	1	0	0	0	0	0	0	0	1	11801	535	19	1		1	PGA5	11	61018642	Silent	SNP	C	TCGA-OR-A5LB-01A-11D-A29I-10	13584646	61018642	73987874	171	9875										
DPP3	10072	broad.mit.edu	37	chr11	66272116	66272116	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	caggggatgtggccggagggCgggccctgtacgaggggtat	21	8	0	0	rs147163996		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	DPP3-46	NM_130443	exon17	c.C1912T	p.R638W	GGAGGGCGGGCCC	.	63	3	66	0	C|1.000;T|0.000	19	18	1	0	0	T	66272116	C	T	66272116	3	4	49	1	0	0	0	0	1	0	0	0	4739	759	27	1	1974	1	DPP3	11	66272116	Missense_Mutation	SNP	C	TCGA-OR-A5LB-01A-11D-A29I-10	5253474	66272116	68734400	172	9876										
CCS	9973	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	66361154	66361154	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	acctgtcagagctgtgtggaCgcggtgcgcaaatccctgca	13	12	1	1	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	CCS-90	NM_005125	exon2	c.C81T	p.D27D	TGTGGACGCGGTG	.	98	89	99	1	.	29	1	28	0	0	T	66361154	C	T	66361154	2	4	49	1	0	0	0	0	0	0	0	1	2958	535	19	1		1	CCS	11	66361154	Silent	SNP	C	TCGA-OR-A5LB-01A-11D-A29I-10	89038	66361154	68645362	173	9877										
MYO7A	4647	broad.mit.edu;bcgsc.ca	37	chr11	76900479	76900479	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	tggattctcgtgtctctctgCgtgggctgtttcgccccctc	11	14	3	0	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	MYO7A-138	NM_000260	exon28	c.C3594T	p.C1198C	TCTCTGCGTGGGC	.	83	5	121	1	.	0	0	0	0	0	T	76900479	C	T	76900479	2	4	49	1	0	0	0	0	0	0	0	1	10110	776	27	1		1	MYO7A	11	76900479	Silent	SNP	C	TCGA-OR-A5LB-01A-11D-A29I-10	10539325	76900479	58106037	174	9878										
EXPH5	23086	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr11	108383875	108383876	+	Frame_Shift_Ins	INS	-	-	TG													0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	ttaatgtcattggatttatcINStgtgtgcggtatatacattt					novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	EXPH5-95	NM_015065	exon6	c.2359_2360insCA	p.D787fs	ATTTATCTGTGTG	.	75	57	73	0	.	0	0	0	0	0	TG	108383876	-	TG	108383875	7	5	49	1	0	1	1	0	0	0	0	0	5335	913	32	0	3614	0	EXPH5	11	108383875	Frame_Shift_Ins	INS	-	TCGA-OR-A5LB-01A-11D-A29I-10	31483396	108383875	26622641	175	9879										
CADM1	23705	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	115111112	115111112	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	tctccctcgatcactgtcacGtctttcgtaaacagattctg	6	13	5	1	rs138296059		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	CADM1-92	NM_014333	exon2	c.C153T	p.D51D	TGTCACGTCTTTC	.	86	34	96	0	G|1.000;A|0.000	14	8	6	0	0	A	115111112	G	A	115111112	2	1	49	1	0	0	0	0	0	0	0	1	2572	1136	40	1		1	CADM1	11	115111112	Silent	SNP	G	TCGA-OR-A5LB-01A-11D-A29I-10	6727237	115111112	19895404	176	9880										
SIK3	23387	ucsc.edu;bcgsc.ca	37	chr11	116734454	116734454	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	ctttgaaggcctggatgctcGcagccccatctgagaaccgg	12	13	1	2	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	SIK3-919	NM_025164	exon15	c.C1715T	p.A572V	ATGCTCGCAGCCC	.	214	192	196	2	.	5	0	4	1	0	A	116734454	G	A	116734454	3	1	49	1	0	0	0	0	1	0	0	0	14354	1087	38	1	2112	1	SIK3	11	116734454	Missense_Mutation	SNP	G	TCGA-OR-A5LB-01A-11D-A29I-10	1623342	116734454	18272062	177	9881										
MLL	4297	broad.mit.edu	37	chr11	118344186	118344186	+	Frame_Shift_Del	DEL	C	C	-													0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	ttctgagctctcacctctcaCccccccgtcttctgtctctt					novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	MLL-1255	NM_001197104	exon3	c.2312delC	p.T771fs	CTCTCACCCCCCC	.	119	8	128	0	.	0	0	0	0	0	-	118344186	C	-	118344186	7	5	49	1	0	1	0	1	0	0	0	0	9648	507	18	0	2322	0	MLL	11	118344186	Frame_Shift_Del	DEL	C	TCGA-OR-A5LB-01A-11D-A29I-10	1609732	118344186	16662330	178	9882										
MLL	4297	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr11	118344494	118344495	+	Frame_Shift_Del	DEL	AG	AG	-													0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	gcgtggagaaggacaagagtAgagagagagaccgggagaga					novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	AG	AG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	MLL-1255	NM_001197104	exon3	c.2620_2621del	p.874_874del	AAGAGTAGAGAGA	.	46	38	47	0	.	0	0	0	0	0	-	118344495	AG	-	118344494	7	5	49	1	0	1	0	1	0	0	0	0	9648	412	15	0	2630	0	MLL	11	118344494	Frame_Shift_Del	DEL	AG	TCGA-OR-A5LB-01A-11D-A29I-10	308	118344494	16662022	179	9883										
MLL	4297	bcgsc.ca	37	chr11	118367048	118367048	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	agaagacaatagacagtgtgCgttatgtttgacttatggtg	12	4	0	4	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	MLL-1255	NM_001197104	exon20	c.C5630T	p.A1877V	AGTGTGCGTTATG	.	123	110	128	3	.	0	0	0	0	0	T	118367048	C	T	118367048	3	4	49	1	0	0	0	0	1	0	0	0	9648	768	27	1	5699	1	MLL	11	118367048	Missense_Mutation	SNP	C	TCGA-OR-A5LB-01A-11D-A29I-10	22554	118367048	16639468	180	9884										
CCDC77	84318	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	539878	539878	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	ctgtaggtgaatgtgagcagAgtgaatcttcagctttcaaa	11	6	3	4	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	CCDC77-91	NM_032358	exon7	c.A559C	p.S187R	GAGCAGAGTGAAT	.	169	77	94	0	.	8	3	5	0	0	C	539878	A	C	539878	3	2	49	1	0	0	0	0	1	0	0	0	2857	304	11	5	577	5	CCDC77	12	539878	Missense_Mutation	SNP	A	TCGA-OR-A5LB-01A-11D-A29I-10		539878	133312017	181	9885										
EFCAB4B	84766	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	3736625	3736625	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	cacgctgctcagccaccgccGgaccgacaggaacgactgct	11	17	1	0	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	EFCAB4B-92	NM_001144958	exon17	c.C1909T	p.R637W	ACCGCCGGACCGA	.	198	35	91	0	.	0	0	0	0	0	A	3736625	G	A	3736625	3	1	49	1	0	0	0	0	1	0	0	0	4948	1115	39	1	302	1	EFCAB4B	12	3736625	Missense_Mutation	SNP	G	TCGA-OR-A5LB-01A-11D-A29I-10	3196747	3736625	130115270	182	9886										
VWF	7450	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	6219643	6219643	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	agcaggacttgaaagttgccGctgccatcgatcctggccac	11	13	0	1	rs202062122		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	VWF-163	NM_000552	exon5	c.C429T	p.S143S	GTTGCCGCTGCCA	.	315	163	148	1	G|0.999;A|0.000	15	15	0	0	0	A	6219643	G	A	6219643	2	1	49	1	0	0	0	0	0	0	0	1	17284	1078	38	1		1	VWF	12	6219643	Silent	SNP	G	TCGA-OR-A5LB-01A-11D-A29I-10	2483018	6219643	127632252	183	9887										
LPAR5	57121	broad.mit.edu	37	chr12	6729418	6729418	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	ggtggtgacggcggacctttCggattgcgcgagcgccgccc	17	13	0	1	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	LPAR5-70	NM_001142961	exon2	c.G997A	p.E333K	ACCTTTCGGATTG	.	72	3	33	0	.	0	0	0	0	0	T	6729418	C	T	6729418	3	4	49	1	0	0	0	0	1	0	0	0	8935	893	31	1	125	1	LPAR5	12	6729418	Missense_Mutation	SNP	C	TCGA-OR-A5LB-01A-11D-A29I-10	509775	6729418	127122477	184	9888										
ZNF384	171017	hgsc.bcm.edu	37	chr12	6787405	6787405	+	Frame_Shift_Del	DEL	G	G	-													0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	ccgcttcttcttccggccccGgggtggcttaggagccacac					novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	ZNF384-1083	NM_133476	exon6	c.574delC	p.R192fs	GGCCCCGGGGTGG	.	189	23	88	1	.	0	0	0	0	0	-	6787405	G	-	6787405	7	5	49	1	0	1	0	1	0	0	0	0	17912	1115	39	0	1183	0	ZNF384	12	6787405	Frame_Shift_Del	DEL	G	TCGA-OR-A5LB-01A-11D-A29I-10	57987	6787405	127064490	185	9889										
ATN1	1822	ucsc.edu	37	chr12	7045912	7045912	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	cagcagcagcagcagcagcaGcagcagcagcagcagcagca	13	14	0	0	rs144280633	byfrequency	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	ATN1-139	NM_001007026	exon5	c.G1482A	p.Q494Q	GCAGCAGCAGCAG	.	202	29	131	0	G|0.972;A|0.028	3285	3220	60	4	1	A	7045912	G	A	7045912	2	1	49	1	0	0	0	0	0	0	0	1	1112	962	34	3		3	ATN1	12	7045912	Silent	SNP	G	TCGA-OR-A5LB-01A-11D-A29I-10	258507	7045912	126805983	186	9890										
PEX5	5830	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	7356126	7356126	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	ctttctgactatgatgacctTacgtcagctacctatgataa	6	10	2	4	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	PEX5-91	NM_001131023	exon10	c.T990G	p.L330L	TGACCTTACGTCA	.	245	138	123	0	.	12	8	4	0	0	G	7356126	T	G	7356126	2	3	49	1	0	0	0	0	0	0	0	1	11777	1741	61	5		5	PEX5	12	7356126	Silent	SNP	T	TCGA-OR-A5LB-01A-11D-A29I-10	310214	7356126	126495769	187	9891										
MAGOHB	55110	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	10766108	10766108	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	tgccctacgtagtagcgcagGtagaaatcgctagccacagc	11	12	0	1	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	MAGOHB-153	NM_018048	exon1	c.C24T	p.Y8Y	GCGCAGGTAGAAA	.	260	107	89	0	.	19	13	6	0	0	A	10766108	G	A	10766108	2	1	49	1	0	0	0	0	0	0	0	1	9223	1256	44	3		3	MAGOHB	12	10766108	Silent	SNP	G	TCGA-OR-A5LB-01A-11D-A29I-10	3409982	10766108	123085787	188	9892										
PRB3	5544	hgsc.bcm.edu	37	chr12	11420332	11420458	+	Splice_Site	DEL	GAGGGTGGGGGACCTTGAGGTTTGTTGCCTCCTTGTGAAGGTGGTCCTTCTGGCTTTCCTGGACGAGGTGGGGGACCTTGGGACTGGTTTCCTCCTTGTGGGGGTGGTCCTTCTGGCTTTCCTGGAC	GAGGGTGGGGGACCTTGAGGTTTGTTGCCTCCTTGTGAAGGTGGTCCTTCTGGCTTTCCTGGACGAGGTGGGGGACCTTGGGACTGGTTTCCTCCTTGTGGGGGTGGTCCTTCTGGCTTTCCTGGAC	-													0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	tccttgtggctttcctggatGagggtgggggaccttgaggt					novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	GAGGGTGGGGGACCTTGAGGTTTGTTGCCTCCTTGTGAAGGTGGTCCTTCTGGCTTTCCTGGACGAGGTGGGGGACCTTGGGACTGGTTTCCTCCTTGTGGGGGTGGTCCTTCTGGCTTTCCTGGAC	GAGGGTGGGGGACCTTGAGGTTTGTTGCCTCCTTGTGAAGGTGGTCCTTCTGGCTTTCCTGGACGAGGTGGGGGACCTTGGGACTGGTTTCCTCCTTGTGGGGGTGGTCCTTCTGGCTTTCCTGGAC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	PRB3-1	.	.	.	.	CTGGATGAGGGTG	.	87	0	35	0	.	0	0	0	0	0	-	11420458	GAGGGTGGGGGACCTTGAGGTTTGTTGCCTCCTTGTGAAGGTGGTCCTTCTGGCTTTCCTGGACGAGGTGGGGGACCTTGGGACTGGTTTCCTCCTTGTGGGGGTGGTCCTTCTGGCTTTCCTGGAC	-	11420332	8	5	49	1	0	1	0	1	0	0	1	0	12476	1304	45	0	209	0	PRB3	12	11420332	Splice_Site	DEL	GAGGGTGGGGGACCTTGAGGTTTGTTGCCTCCTTGTGAAGGTGGTCCTTCTGGCTTTCCTGGACGAGGTGGGGGACCTTGGGACTGGTTTCCTCCTTGTGGGGGTGGTCCTTCTGGCTTTCCTGGAC	TCGA-OR-A5LB-01A-11D-A29I-10	654224	11420332	122431563	189	9893										
C12orf36	283422	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	13526224	13526224	+	RNA	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	tttctcaattaaagccgtctGtccactcttcagcctctgaa	5	13	5	1	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	C12orf36-90	.	.	.	.	CCGTCTGTCCACT	.	156	65	68	1	.	0	0	0	0	0	T	13526224	G	T	13526224	1	4	49	0	1	0	0	0	0	0	0	0	1687	1386	48	3		3	C12orf36	12	13526224	RNA	SNP	G	TCGA-OR-A5LB-01A-11D-A29I-10	2105892	13526224	120325671	190	9894										
KIF21A	55605	broad.mit.edu;bcgsc.ca	37	chr12	39751149	39751149	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	catggctttaattcttacacGcaggttattattttcagtct	6	8	3	0	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	KIF21A-97	NM_001173463	exon9	c.C1306T	p.R436C	TTACACGCAGGTT	.	234	7	100	1	.	1	1	0	0	0	A	39751149	G	A	39751149	3	1	49	1	0	0	0	0	1	0	0	0	8309	1087	38	1	3838	1	KIF21A	12	39751149	Missense_Mutation	SNP	G	TCGA-OR-A5LB-01A-11D-A29I-10	26224925	39751149	94100746	191	9895										
SLC2A13	114134	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	40422218	40422218	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	ctacgggccttctgagtctgTcctttctgaataagccatcg	9	12	3	2	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	SLC2A13-515	NM_052885	exon3	c.A810T	p.G270G	AGTCTGTCCTTTC	.	62	9	42	0	.	4	4	0	0	0	A	40422218	T	A	40422218	2	1	49	1	0	0	0	0	0	0	0	1	14577	1654	58	5		5	SLC2A13	12	40422218	Silent	SNP	T	TCGA-OR-A5LB-01A-11D-A29I-10	671069	40422218	93429677	192	9896										
CACNB3	784	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	49218962	49218962	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	gcaggcggaacatgttccccCatatgacgtggtgccctcca	11	14	0	1	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	CACNB3-90	NM_000725	exon7	c.C509T	p.P170L	TTCCCCCATATGA	.	333	59	161	0	.	6	4	2	0	0	T	49218962	C	T	49218962	3	4	49	1	0	0	0	0	1	0	0	0	2560	594	21	3	535	3	CACNB3	12	49218962	Missense_Mutation	SNP	C	TCGA-OR-A5LB-01A-11D-A29I-10	8796744	49218962	84632933	193	9897										
LETMD1	25875	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	51453177	51453177	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	tctcttgctgcacaacgtggTcctgctctccaccaactacc	6	17	2	0	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	LETMD1-90	NM_001243689	exon9	c.T1085C	p.V362A	ACGTGGTCCTGCT	.	406	187	175	0	.	59	32	27	0	0	C	51453177	T	C	51453177	3	2	49	1	0	0	0	0	1	0	0	0	8758	1667	58	4	1080	4	LETMD1	12	51453177	Missense_Mutation	SNP	T	TCGA-OR-A5LB-01A-11D-A29I-10	2234215	51453177	82398718	194	9898										
HOXC4	3221	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	54448765	54448765	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	ggagaaggatcgagatcgccCactcgctgtgcctctctgag	13	12	1	3	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	HOXC4-91	NM_014620	exon4	c.C571A	p.H191N	ATCGCCCACTCGC	.	430	196	200	0	.	8	5	3	0	0	A	54448765	C	A	54448765	3	1	49	1	0	0	0	0	1	0	0	0	7334	594	21	3	577	3	HOXC4	12	54448765	Missense_Mutation	SNP	C	TCGA-OR-A5LB-01A-11D-A29I-10	2995588	54448765	79403130	195	9899										
LRP1	4035	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	57579562	57579562	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	agcacatgaagaacgtcatcGccctggcctttgactaccgg	10	13	1	3	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	LRP1-596	NM_002332	exon41	c.G6712A	p.A2238T	GTCATCGCCCTGG	.	243	106	119	2	.	2	2	0	0	0	A	57579562	G	A	57579562	3	1	49	1	0	0	0	0	1	0	0	0	8978	1087	38	1	6874	1	LRP1	12	57579562	Missense_Mutation	SNP	G	TCGA-OR-A5LB-01A-11D-A29I-10	3130797	57579562	76272333	196	9900										
CCDC53	51019	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	102437938	102437938	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	catttgtgacactggtgacaTttaaaggagatacttcaact	8	7	1	3	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	.	NM_016053	exon4	c.A269G	p.N90S	GTGACATTTAAAG	.	224	96	85	0	.	105	65	40	0	0	C	102437938	T	C	102437938	3	2	49	1	0	0	0	0	1	0	0	0	2829	1493	52	4	262	4	CCDC53	12	102437938	Missense_Mutation	SNP	T	TCGA-OR-A5LB-01A-11D-A29I-10	44858376	102437938	31413957	197	9901										
ALDH1L2	160428	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	105446693	105446693	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	gcatttttaccatgatttcaTtgacctcctttgaaatctga	5	9	2	4	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	ALDH1L2-91	NM_001034173	exon11	c.A1304T	p.N435I	ATTTCATTGACCT	.	196	68	108	0	.	0	0	0	0	0	A	105446693	T	A	105446693	3	1	49	1	0	0	0	0	1	0	0	0	495	1493	52	5	1519	5	ALDH1L2	12	105446693	Missense_Mutation	SNP	T	TCGA-OR-A5LB-01A-11D-A29I-10	3008755	105446693	28405202	198	9902										
CUX2	23316	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	111760254	111760254	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	ctgtcacagggcagcgtgagCgacatgctgtcccggccgaa	14	13	1	1	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	CUX2-140	NM_015267	exon18	c.C2796T	p.S932S	CGTGAGCGACATG	.	318	175	58	1	.	0	0	0	0	0	T	111760254	C	T	111760254	2	4	49	1	0	0	0	0	0	0	0	1	4071	767	27	1		1	CUX2	12	111760254	Silent	SNP	C	TCGA-OR-A5LB-01A-11D-A29I-10	6313561	111760254	22091641	199	9903										
NUFIP1	26747	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr13	45563471	45563471	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	cccagaacatccagctgtccCgcggcggggcagtgtcgctc	13	16	0	1	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	NUFIP1-90	NM_012345	exon1	c.G101A	p.R34Q	CTGTCCCGCGGCG	.	128	111	90	1	.	1	0	1	0	0	T	45563471	C	T	45563471	3	4	49	1	0	0	0	0	1	0	0	0	10777	652	23	1	1426	1	NUFIP1	13	45563471	Missense_Mutation	SNP	C	TCGA-OR-A5LB-01A-11D-A29I-10		45563471	69606407	200	9904										
TRIM13	10206	ucsc.edu;bcgsc.ca;mdanderson.org	37	chr13	50590277	50590277	+	RNA	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	tctctaaaaacttgaagttcCtcaggcctgtaacttctgga	7	10	3	1	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	TRIM13-228	.	.	.	.	AAGTTCCTCAGGC	.	63	24	54	0	.	0	0	0	0	0	A	50590277	C	A	50590277	1	1	49	0	1	0	0	0	0	0	0	0	16526	696	24	3		3	TRIM13	13	50590277	RNA	SNP	C	TCGA-OR-A5LB-01A-11D-A29I-10	5026806	50590277	64579601	201	9905										
ATP7B	540	hgsc.bcm.edu;bcgsc.ca	37	chr13	52548260	52548261	+	Frame_Shift_Ins	INS	-	-	AA													0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	gatgcacaggtcatgccggcINSaatggcaatcagagtggtac					novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	ATP7B-92	NM_000053	exon2	c.1096_1097insTT	p.A366fs	TGCCGGCAATGGC	.	131	116	136	1	.	0	0	0	0	0	AA	52548261	-	AA	52548260	7	5	49	1	0	1	1	0	0	0	0	0	1192	710	25	0	3381	0	ATP7B	13	52548260	Frame_Shift_Ins	INS	-	TCGA-OR-A5LB-01A-11D-A29I-10	1957983	52548260	62621618	202	9906										
SLITRK1	114798	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr13	84454943	84454943	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	gaccactcggccgatcagggCattcttgggaatgttttcca	11	11	2	0	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	SLITRK1-94	NM_052910	exon1	c.G700T	p.A234S	TCAGGGCATTCTT	.	107	86	117	1	.	0	0	0	0	0	A	84454943	C	A	84454943	3	1	49	1	0	0	0	0	1	0	0	0	14777	710	25	3	1394	3	SLITRK1	13	84454943	Missense_Mutation	SNP	C	TCGA-OR-A5LB-01A-11D-A29I-10	31906683	84454943	30714935	203	9907										
SLC15A1	6564	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr13	99339879	99339879	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	cgtgacagagaagaccacttCgccacaggtgagaagaaaat	11	9	0	5	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	SLC15A1-91	NM_005073	exon21	c.G1783A	p.E595K	CCACTTCGCCACA	.	118	19	116	0	.	0	0	0	0	0	T	99339879	C	T	99339879	3	4	49	1	0	0	0	0	1	0	0	0	14433	893	31	1	355	1	SLC15A1	13	99339879	Missense_Mutation	SNP	C	TCGA-OR-A5LB-01A-11D-A29I-10	14884936	99339879	15829999	204	9908										
SLC10A2	6555	broad.mit.edu;bcgsc.ca	37	chr13	103718400	103718400	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	agaggaagccaacacaaatgCcccacggccgctttatgtgc	10	13	0	1	rs201168803		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	SLC10A2-94	NM_000452	exon1	c.G200A	p.G67D	CAAATGCCCCACG	.	158	15	139	0	.	0	0	0	0	0	T	103718400	C	T	103718400	3	4	49	1	0	0	0	0	1	0	0	0	14409	739	26	3	870	3	SLC10A2	13	103718400	Missense_Mutation	SNP	C	TCGA-OR-A5LB-01A-11D-A29I-10	4378521	103718400	11451478	205	9909										
RPGRIP1	57096	bcgsc.ca	37	chr14	21793413	21793413	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	gctggtggagaagagttcggGgttctagagtactggatgag	18	4	1	4	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	RPGRIP1-140	NM_020366	exon15	c.G2238T	p.G746G	GTTCGGGGTTCTA	.	261	120	128	4	.	0	0	0	0	0	T	21793413	G	T	21793413	2	4	49	1	0	0	0	0	0	0	0	1	13584	1219	43	3		3	RPGRIP1	14	21793413	Silent	SNP	G	TCGA-OR-A5LB-01A-11D-A29I-10		21793413	85556127	206	9910										
SALL2	6297	broad.mit.edu;bcgsc.ca	37	chr14	21992636	21992636	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	ggttgccacgggtggtaaaaCggtttccacagacattgcac	12	10	0	1	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	SALL2-92	NM_005407	exon2	c.G1226A	p.R409H	GTAAAACGGTTTC	.	548	12	290	1	.	8	8	0	0	0	T	21992636	C	T	21992636	3	4	49	1	0	0	0	0	1	0	0	0	13846	536	19	1	1801	1	SALL2	14	21992636	Missense_Mutation	SNP	C	TCGA-OR-A5LB-01A-11D-A29I-10	199223	21992636	85356904	207	9911										
REM2	161253	broad.mit.edu;bcgsc.ca	37	chr14	23355347	23355347	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	aagttccagagaccctacttCggctccgggctgggaggccg	14	13	0	1	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	REM2-704	NM_173527	exon4	c.C634T	p.R212W	CTACTTCGGCTCC	.	281	13	134	1	.	0	0	0	0	0	T	23355347	C	T	23355347	3	4	49	1	0	0	0	0	1	0	0	0	13258	875	31	1	648	1	REM2	14	23355347	Missense_Mutation	SNP	C	TCGA-OR-A5LB-01A-11D-A29I-10	1362711	23355347	83994193	208	9912										
ACIN1	22985	bcgsc.ca	37	chr14	23549785	23549785	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	tcctctggttttactctaggTatctcttccccttcttcctt	4	14	4	0	rs3811182	byfrequency	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	ACIN1-156	NM_001164814	exon6	c.A933G	p.I311M	TCTAGGTATCTCT	.	249	7	122	2	T|0.511;C|0.489	20	20	0	0	0	C	23549785	T	C	23549785	3	2	49	1	0	0	0	0	1	0	0	0	142	1628	57	4	3295	4	ACIN1	14	23549785	Missense_Mutation	SNP	T	TCGA-OR-A5LB-01A-11D-A29I-10	194438	23549785	83799755	209	9913										
EFS	10278	broad.mit.edu	37	chr14	23829997	23829997	+	Frame_Shift_Del	DEL	G	G	-													0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	tcggcggaaggacagctcctGgggggactcagcggtgttgt					novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	EFS-153	NM_005864	exon2	c.64delC	p.Q22fs	GCTCCTGGGGGGA	.	213	9	84	0	.	0	0	0	0	0	-	23829997	G	-	23829997	7	5	49	1	0	1	0	1	0	0	0	0	4970	1357	47	0	1641	0	EFS	14	23829997	Frame_Shift_Del	DEL	G	TCGA-OR-A5LB-01A-11D-A29I-10	280212	23829997	83519543	210	9914										
MYH6	4624	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	chr14	23859651	23859651	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	cctcctccagctcctcgatgCgtgcctgggtcagacacaaa	9	16	1	1	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	MYH6-94	NM_002471	exon26	c.G3347A	p.R1116H	TCGATGCGTGCCT	.	103	39	23	0	.	0	0	0	0	0	T	23859651	C	T	23859651	3	4	49	1	0	0	0	0	1	0	0	0	10066	768	27	1	2528	1	MYH6	14	23859651	Missense_Mutation	SNP	C	TCGA-OR-A5LB-01A-11D-A29I-10	29654	23859651	83489889	211	9915										
AP1G2	8906	bcgsc.ca	37	chr14	24031492	24031495	+	Splice_Site	DEL	CTTA	CTTA	-													0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	tcaaggggctgggaccccttCttacttgttgtccccacaga					novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	CTTA	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	AP1G2-45	.	.	.	.	CCCCTTCTTACTT	.	321	154	191	1	.	0	0	0	0	0	-	24031495	CTTA	-	24031492	8	5	49	1	0	1	0	1	0	0	1	0	733	928	32	0		0	AP1G2	14	24031492	Splice_Site	DEL	CTTA	TCGA-OR-A5LB-01A-11D-A29I-10	171841	24031492	83318048	212	9916										
LRRC16B	90668	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr14	24538366	24538366	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	ggccccctgatccaggccggCggactgcccccctgaagccc	12	20	0	2	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	LRRC16B-139	NM_138360	exon39	c.C4003T	p.R1335W	GGCCGGCGGACTG	.	241	106	128	0	.	0	0	0	0	0	T	24538366	C	T	24538366	3	4	49	1	0	0	0	0	1	0	0	0	8999	759	27	1	4157	1	LRRC16B	14	24538366	Missense_Mutation	SNP	C	TCGA-OR-A5LB-01A-11D-A29I-10	506874	24538366	82811174	213	9917										
NYNRIN	57523	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr14	24885257	24885258	+	Frame_Shift_Del	DEL	CT	CT	-													0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	taccgaacctcctaccggggCtctctgtttgctgtgacagt					novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	CT	CT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	NYNRIN-3	NM_025081	exon9	c.4302_4303del	p.1434_1435del	CCGGGGCTCTCTG	.	124	74	68	0	.	0	0	0	0	0	-	24885258	CT	-	24885257	7	5	49	1	0	1	0	1	0	0	0	0	10825	784	28	0	4332	0	NYNRIN	14	24885257	Frame_Shift_Del	DEL	CT	TCGA-OR-A5LB-01A-11D-A29I-10	346891	24885257	82464283	214	9918										
INSM2	84684	broad.mit.edu	37	chr14	36004658	36004658	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	gagccaccgctgcctcagggCccctacacggagggggtgtt	15	14	1	0	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	INSM2-226	NM_032594	exon1	c.C1200A	p.G400G	TCAGGGCCCCTAC	.	146	5	39	1	.	0	0	0	0	0	A	36004658	C	A	36004658	2	1	49	1	0	0	0	0	0	0	0	1	7793	726	26	3		3	INSM2	14	36004658	Silent	SNP	C	TCGA-OR-A5LB-01A-11D-A29I-10	11119401	36004658	71344882	215	9919										
FBXO34	55030	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr14	55818555	55818555	+	Frame_Shift_Del	DEL	T	T	-													0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	acccagttccagggatgttgTtttttttgccacctggtcag					novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	FBXO34-228	NM_017943	exon2	c.1447delT	p.F483fs	ATGTTGTTTTTTT	.	197	78	106	0	.	0	0	0	0	0	-	55818555	T	-	55818555	7	5	49	1	0	1	0	1	0	0	0	0	5763	1725	60	0	1449	0	FBXO34	14	55818555	Frame_Shift_Del	DEL	T	TCGA-OR-A5LB-01A-11D-A29I-10	19813897	55818555	51530985	216	9920										
SYNE2	23224	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	64596621	64596621	+	Splice_Site	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	ggaggtttacaaattagaggTatgcctgagcagaaaacatt	11	5	0	3	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	SYNE2-164	NM_182914	exon75	c.14139+2T>C	.	TAGAGGTATGCCT	.	230	95	91	2	.	0	0	0	0	0	C	64596621	T	C	64596621	5	2	49	1	0	0	0	0	0	0	1	0	15483	1652	57	4	14435	4	SYNE2	14	64596621	Splice_Site	SNP	T	TCGA-OR-A5LB-01A-11D-A29I-10	8778066	64596621	42752919	217	9921										
GPR68	8111	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr14	91701094	91701094	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	gatgtagatgttctcgtacaGgaggatgccgcacacctggc	13	10	1	1	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	GPR68-91	NM_001177676	exon2	c.C301A	p.L101M	CGTACAGGAGGAT	.	405	199	186	0	.	0	0	0	0	0	T	91701094	G	T	91701094	3	4	49	1	0	0	0	0	1	0	0	0	6727	991	35	3	800	3	GPR68	14	91701094	Missense_Mutation	SNP	G	TCGA-OR-A5LB-01A-11D-A29I-10	27104473	91701094	15648446	218	9922										
GSC	145258	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr14	95235475	95235475	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	agaagctgcagctcggtgcgCgacagcgtgcccacgttcat	13	13	1	1	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	GSC-90	NM_173849	exon2	c.G435A	p.S145S	GGTGCGCGACAGC	.	343	83	114	0	.	0	0	0	0	0	T	95235475	C	T	95235475	2	4	49	1	0	0	0	0	0	0	0	1	6835	755	27	1		1	GSC	14	95235475	Silent	SNP	C	TCGA-OR-A5LB-01A-11D-A29I-10	3534381	95235475	12114065	219	9923										
BDKRB2	624	broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr14	96706741	96706741	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	cttttccactttctttcagcGccgacatgctcaatgtcacc	5	15	4	0	rs200693201		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	BDKRB2-662	NM_000623	exon3	c.G76A	p.A26T	TTCAGCGCCGACA	.	148	68	86	1	.	0	0	0	0	0	A	96706741	G	A	96706741	3	1	49	1	0	0	0	0	1	0	0	0	1394	1101	38	1	82	1	BDKRB2	14	96706741	Missense_Mutation	SNP	G	TCGA-OR-A5LB-01A-11D-A29I-10	1471266	96706741	10642799	220	9924										
ADSSL1	122622	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr14	105201420	105201420	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	agtacgacttccacctgctgCccagcggcatcatcaacacc	7	17	2	0	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	ADSSL1-515	NM_199165	exon2	c.C385T	p.P129S	CTGCTGCCCAGCG	.	459	89	201	1	.	5	3	2	0	0	T	105201420	C	T	105201420	3	4	49	1	0	0	0	0	1	0	0	0	348	739	26	3	587	3	ADSSL1	14	105201420	Missense_Mutation	SNP	C	TCGA-OR-A5LB-01A-11D-A29I-10	8494679	105201420	2148120	221	9925										
ADSSL1	122622	broad.mit.edu	37	chr14	105201447	105201447	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	gcatcatcaacaccaaggccGtgtccttcattggtgagtgc	10	12	3	1	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	ADSSL1-515	NM_199165	exon2	c.G412A	p.V138M	AAGGCCGTGTCCT	.	462	10	197	0	.	0	0	0	0	0	A	105201447	G	A	105201447	3	1	49	1	0	0	0	0	1	0	0	0	348	1145	40	1	614	1	ADSSL1	14	105201447	Missense_Mutation	SNP	G	TCGA-OR-A5LB-01A-11D-A29I-10	27	105201447	2148093	222	9926										
BRF1	2972	hgsc.bcm.edu;broad.mit.edu	37	chr14	105693009	105693010	+	Frame_Shift_Ins	INS	-	-	G													0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	ctctgcccagctgtgtacgaINSgggggggtcgcactcctcct					novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	BRF1-155	NM_001519	exon8	c.877_878insC	p.S293fs	TGTACGAGGGGGG	.	75	12	45	0	.	0	0	0	0	0	G	105693010	-	G	105693009	7	5	49	1	0	1	1	0	0	0	0	0	1513	304	11	0	1200	0	BRF1	14	105693009	Frame_Shift_Ins	INS	-	TCGA-OR-A5LB-01A-11D-A29I-10	491562	105693009	1656531	223	9927										
APBA2	321	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr15	29393975	29393975	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	aagatgatctgccatgtgttCgagtcggaggatgtaagtaa	13	5	1	2	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	APBA2-90	NM_005503	exon9	c.C1512T	p.F504F	TGTGTTCGAGTCG	.	308	132	132	0	.	0	0	0	0	0	T	29393975	C	T	29393975	2	4	49	1	0	0	0	0	0	0	0	1	757	883	31	1		1	APBA2	15	29393975	Silent	SNP	C	TCGA-OR-A5LB-01A-11D-A29I-10		29393975	73137417	224	9928										
RYR3	6263	ucsc.edu;bcgsc.ca	37	chr15	34080629	34080629	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	agatctctatgccttctaccCcatgctgatccgctacgtgg	8	14	2	2	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	RYR3-520	NM_001243996	exon67	c.C9800T	p.P3267L	TCTACCCCATGCT	.	283	124	131	2	.	0	0	0	0	0	T	34080629	C	T	34080629	3	4	49	1	0	0	0	0	1	0	0	0	13805	623	22	3	10066	3	RYR3	15	34080629	Missense_Mutation	SNP	C	TCGA-OR-A5LB-01A-11D-A29I-10	4686654	34080629	68450763	225	9929										
LPCAT4	254531	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr15	34651423	34651423	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	tggtgtctgggaggtgcctcGagaggtgtgtggggggcgca	22	6	1	1	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	LPCAT4-90	NM_153613	exon14	c.C1480T	p.R494X	TGCCTCGAGAGGT	.	93	48	41	0	.	29	22	7	0	0	A	34651423	G	A	34651423	4	1	49	1	0	0	0	0	0	1	0	0	8940	1066	37	1	98	1	LPCAT4	15	34651423	Nonsense_Mutation	SNP	G	TCGA-OR-A5LB-01A-11D-A29I-10	570794	34651423	67879969	226	9930										
SPRED1	161742	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr15	38643332	38643332	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	acagacatcctgacatgtggAaaaatgacttggaaagagat	10	6	0	4	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	SPRED1-1085	NM_152594	exon7	c.A802G	p.K268E	ATGTGGAAAAATG	.	171	29	83	0	.	11	7	4	0	0	G	38643332	A	G	38643332	3	3	49	1	0	0	0	0	1	0	0	0	15129	247	9	4	828	4	SPRED1	15	38643332	Missense_Mutation	SNP	A	TCGA-OR-A5LB-01A-11D-A29I-10	3991909	38643332	63888060	227	9931										
RASGRP1	10125	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr15	38786797	38786797	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	gacctgaagggccctcactgCcaatccaaggctgtgattca	10	13	2	2	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	RASGRP1-697	NM_005739	exon16	c.G2045A	p.G682D	TCACTGCCAATCC	.	142	68	78	0	.	2	0	2	0	0	T	38786797	C	T	38786797	3	4	49	1	0	0	0	0	1	0	0	0	13109	739	26	3	356	3	RASGRP1	15	38786797	Missense_Mutation	SNP	C	TCGA-OR-A5LB-01A-11D-A29I-10	143465	38786797	63744595	228	9932										
INO80	54617	broad.mit.edu	37	chr15	41337219	41337219	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	ccttctggcgctccccaggaGcgtagctgatggagcctgta	13	13	1	1	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	INO80-72	NM_017553	exon24	c.C2790A	p.R930R	CCAGGAGCGTAGC	.	97	5	46	1	.	14	12	2	0	0	T	41337219	G	T	41337219	2	4	49	1	0	0	0	0	0	0	0	1	7767	958	34	3		3	INO80	15	41337219	Silent	SNP	G	TCGA-OR-A5LB-01A-11D-A29I-10	2550422	41337219	61194173	229	9933										
SPTBN5	51332	bcgsc.ca	37	chr15	42169369	42169369	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	tggcacaggtggcagtgaaaCcatccacttctcggccaaac	10	13	1	1	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	SPTBN5-91	NM_016642	exon18	c.G3551A	p.G1184D	GTGAAACCATCCA	.	656	620	351	4	.	0	0	0	0	0	T	42169369	C	T	42169369	3	4	49	1	0	0	0	0	1	0	0	0	15159	507	18	3	7572	3	SPTBN5	15	42169369	Missense_Mutation	SNP	C	TCGA-OR-A5LB-01A-11D-A29I-10	832150	42169369	60362023	230	9934										
B2M	567	hgsc.bcm.edu	37	chr15	45003781	45003782	+	Frame_Shift_Del	DEL	CT	CT	-													0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	ccttagctgtgctcgcgctaCtctctctttctggcctggag					novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	CT	CT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	B2M-93	NM_004048	exon1	c.37_38del	p.13_13del	GCGCTACTCTCTC	.	201	177	65	2	.	0	0	0	0	0	-	45003782	CT	-	45003781	7	5	49	1	0	1	0	1	0	0	0	0	1245	565	20	0	39	0	B2M	15	45003781	Frame_Shift_Del	DEL	CT	TCGA-OR-A5LB-01A-11D-A29I-10	2834412	45003781	57527611	231	9935										
SPATA5L1	79029	hgsc.bcm.edu	37	chr15	45695445	45695445	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	cgccccggcgctgcagggttCccggcctggggagaccgagg	18	15	0	1	rs143453038		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	SPATA5L1-94	NM_024063	exon1	c.C818G	p.S273C	AGGGTTCCCGGCC	.	15	14	2	0	C|0.982;G|0.018	3	0	3	0	0	G	45695445	C	G	45695445	3	3	49	1	0	0	0	0	1	0	0	0	15049	855	30	3	820	3	SPATA5L1	15	45695445	Missense_Mutation	SNP	C	TCGA-OR-A5LB-01A-11D-A29I-10	691664	45695445	56835947	232	9936										
MNS1	55329	hgsc.bcm.edu	37	chr15	56736723	56736723	+	Frame_Shift_Del	DEL	T	T	-													0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	gctgctcataagcttcctgcTtttttttttcttgttcttca					novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	MNS1-91	NM_018365	exon5	c.605delA	p.K202fs	TCCTGCTTTTTTT	.	94	42	36	0	.	0	0	0	0	0	-	56736723	T	-	56736723	7	5	49	1	0	1	0	1	0	0	0	0	9705	1609	56	0	906	0	MNS1	15	56736723	Frame_Shift_Del	DEL	T	TCGA-OR-A5LB-01A-11D-A29I-10	11041278	56736723	45794669	233	9937										
NR2E3	10002	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	chr15	72105935	72105935	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	gcattggcggtggacccccaCggagtttgcctgcatgaagg	15	11	0	1	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	NR2E3-22	NM_016346	exon7	c.C953T	p.T318M	CCCCCACGGAGTT	.	131	46	31	0	.	0	0	0	0	0	T	72105935	C	T	72105935	3	4	49	1	0	0	0	0	1	0	0	0	10655	535	19	1	976	1	NR2E3	15	72105935	Missense_Mutation	SNP	C	TCGA-OR-A5LB-01A-11D-A29I-10	15369212	72105935	30425457	234	9938										
PML	5371	broad.mit.edu;bcgsc.ca	37	chr15	74315257	74315257	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	agctcaagtgcgacatcagcGcagagatccagcagcgacag	12	12	2	1	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	PML-1083	NM_033250	exon3	c.G691A	p.A231T	ATCAGCGCAGAGA	.	193	7	71	0	.	13	12	1	0	0	A	74315257	G	A	74315257	3	1	49	1	0	0	0	0	1	0	0	0	12164	1087	38	1	701	1	PML	15	74315257	Missense_Mutation	SNP	G	TCGA-OR-A5LB-01A-11D-A29I-10	2209322	74315257	28216135	235	9939										
PML	5371	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr15	74315308	74315308	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	acgccatgacgcaggcgctgCaggagcaggatagtgccttt	14	11	0	1	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	PML-1083	NM_033250	exon3	c.C742T	p.Q248X	GCGCTGCAGGAGC	.	133	57	37	0	.	2	2	0	0	0	T	74315308	C	T	74315308	4	4	49	1	0	0	0	0	0	1	0	0	12164	711	25	3	752	3	PML	15	74315308	Nonsense_Mutation	SNP	C	TCGA-OR-A5LB-01A-11D-A29I-10	51	74315308	28216084	236	9940										
KIAA1199	57214	broad.mit.edu	37	chr15	81201549	81201549	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	acctggccggtgatgtagacGaaaggggaggttatgaccca	15	8	0	3	rs200544972		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	KIAA1199-93	NM_018689	exon13	c.G1699A	p.E567K	GTAGACGAAAGGG	.	338	8	167	0	G|0.999;A|0.001	0	0	0	0	0	A	81201549	G	A	81201549	3	1	49	1	0	0	0	0	1	0	0	0	8234	1059	37	1	1745	1	KIAA1199	15	81201549	Missense_Mutation	SNP	G	TCGA-OR-A5LB-01A-11D-A29I-10	6886241	81201549	21329843	237	9941										
KIAA1199	57214	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr15	81218052	81218052	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	gcctacaagaaccaggaccaCggggcctggctgcgcggcgg	16	14	0	1	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	KIAA1199-93	NM_018689	exon18	c.C2376T	p.H792H	GGACCACGGGGCC	.	170	159	64	0	.	0	0	0	0	0	T	81218052	C	T	81218052	2	4	49	1	0	0	0	0	0	0	0	1	8234	535	19	1		1	KIAA1199	15	81218052	Silent	SNP	C	TCGA-OR-A5LB-01A-11D-A29I-10	16503	81218052	21313340	238	9942										
KIF7	374654	hgsc.bcm.edu	37	chr15	90171910	90171910	+	Frame_Shift_Del	DEL	C	C	-													0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	ctcctcccgggtgcggggggCcccctcagtgaggggggaca					novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	KIF7-523	NM_198525	exon19	c.3772delG	p.A1258fs	GGGGGGCCCCCTC	.	113	19	49	2	.	0	0	0	0	0	-	90171910	C	-	90171910	7	5	49	1	0	1	0	1	0	0	0	0	8330	739	26	0	263	0	KIF7	15	90171910	Frame_Shift_Del	DEL	C	TCGA-OR-A5LB-01A-11D-A29I-10	8953858	90171910	12359482	239	9943										
KIF7	374654	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr15	90190208	90190209	+	Frame_Shift_Ins	INS	-	-	C													0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	ggccattcaggagccgcgggINScccccccagcctggccgcac					novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	KIF7-523	NM_198525	exon7	c.1641_1642insG	p.G547fs	CCGCGGGCCCCCC	.	156	63	29	0	.	0	0	0	0	0	C	90190209	-	C	90190208	7	5	49	1	0	1	1	0	0	0	0	0	8330	1190	42	0	2442	0	KIF7	15	90190208	Frame_Shift_Ins	INS	-	TCGA-OR-A5LB-01A-11D-A29I-10	18298	90190208	12341184	240	9944										
KIF7	374654	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr15	90192528	90192528	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	gctcccgtgtgccgcgccgcGttgcccatctccaggaggct	13	17	1	0	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	KIF7-523	NM_198525	exon4	c.C600T	p.N200N	CGCCGCGTTGCCC	.	152	80	33	0	.	0	0	0	0	0	A	90192528	G	A	90192528	2	1	49	1	0	0	0	0	0	0	0	1	8330	1136	40	1		1	KIF7	15	90192528	Silent	SNP	G	TCGA-OR-A5LB-01A-11D-A29I-10	2320	90192528	12338864	241	9945										
TPSAB1	7177	broad.mit.edu	37	chr16	1291287	1291287	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	tgcgggggctccctcatccaCccccagtgggtgctgaccgc	13	17	1	1	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	TPSAB1-22	NM_003294	exon3	c.C195T	p.H65H	CATCCACCCCCAG	.	214	7	120	0	.	0	0	0	0	0	T	1291287	C	T	1291287	2	4	49	1	0	0	0	0	0	0	0	1	16461	506	18	3		3	TPSAB1	16	1291287	Silent	SNP	C	TCGA-OR-A5LB-01A-11D-A29I-10		1291287	89063466	242	9946										
TELO2	9894	hgsc.bcm.edu	37	chr16	1544462	1544462	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	tttgcctcggcccacttctcGcctgtcctcagatgtcttgc	8	16	3	1	rs146829780	alternate_allele	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	TELO2-90	NM_016111	exon2	c.G180T	p.S60S	CTTCTCGCCTGTC	.	107	6	96	0	G|1.000;C|0.000	18	18	0	0	0	T	1544462	G	T	1544462	2	4	49	1	0	0	0	0	0	0	0	1	15794	1074	38	2		2	TELO2	16	1544462	Silent	SNP	G	TCGA-OR-A5LB-01A-11D-A29I-10	253175	1544462	88810291	243	9947										
IFT140	9742	broad.mit.edu;bcgsc.ca	37	chr16	1608017	1608017	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	tgaagtggagcatggcgtccCgggtggccttgtcgcagtcc	16	11	0	1	rs140458893	alternate_allele	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	IFT140-95	NM_014714	exon19	c.G2318T	p.R773L	GCGTCCCGGGTGG	.	157	8	125	2	C|1.000;T|0.000	1	1	0	0	0	A	1608017	C	A	1608017	3	1	49	1	0	0	0	0	1	0	0	0	7577	652	23	2	2122	2	IFT140	16	1608017	Missense_Mutation	SNP	C	TCGA-OR-A5LB-01A-11D-A29I-10	63555	1608017	88746736	244	9948										
DNAJA3	9093	ucsc.edu;bcgsc.ca	37	chr16	4496977	4496977	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	aggctcttcttgggggtacaGccagagcccagggcctgtac	14	12	2	1	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	DNAJA3-291	NM_001135110	exon8	c.G1087A	p.A363T	GGTACAGCCAGAG	.	149	137	166	3	.	0	0	0	0	0	A	4496977	G	A	4496977	3	1	49	1	0	0	0	0	1	0	0	0	4624	971	34	3	1117	3	DNAJA3	16	4496977	Missense_Mutation	SNP	G	TCGA-OR-A5LB-01A-11D-A29I-10	2888960	4496977	85857776	245	9949										
SMG1	23049	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr16	18864971	18864974	+	Frame_Shift_Del	DEL	GAGT	GAGT	-													0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	aacagatggcagttctattaGagtgagtatgtttttagaca					novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	GAGT	GAGT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	SMG1-1160	NM_015092	exon31	c.4699_4702del	p.1567_1568del	CTATTAGAGTGAG	.	222	87	123	0	.	0	0	0	0	0	-	18864974	GAGT	-	18864971	7	5	49	1	0	1	0	1	0	0	0	0	14830	933	33	0	6415	0	SMG1	16	18864971	Frame_Shift_Del	DEL	GAGT	TCGA-OR-A5LB-01A-11D-A29I-10	14367994	18864971	71489782	246	9950										
GPR139	124274	broad.mit.edu	37	chr16	20043749	20043749	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	gacagcgatatacctgtcaaTggttaacggtacagtaatcc	9	9	1	0	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	GPR139-92	NM_001002911	exon2	c.A370G	p.I124V	TGTCAATGGTTAA	.	417	11	215	0	.	0	0	0	0	0	C	20043749	T	C	20043749	3	2	49	1	0	0	0	0	1	0	0	0	6668	1464	51	4	695	4	GPR139	16	20043749	Missense_Mutation	SNP	T	TCGA-OR-A5LB-01A-11D-A29I-10	1178778	20043749	70311004	247	9951										
VWA3A	146177	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr16	22128481	22128481	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	taggggctactaccactgctAcagcccaaagatggaggtaa	11	10	0	1	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	VWA3A-1	NM_173615	exon11	c.A974T	p.Y325F	ACTGCTACAGCCC	.	357	161	151	0	.	0	0	0	0	0	T	22128481	A	T	22128481	3	4	49	1	0	0	0	0	1	0	0	0	17278	391	14	5	1016	5	VWA3A	16	22128481	Missense_Mutation	SNP	A	TCGA-OR-A5LB-01A-11D-A29I-10	2084732	22128481	68226272	248	9952										
GTF3C1	2975	broad.mit.edu	37	chr16	27512657	27512657	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	tctcctgatccatgatcatcTtctgaatcctgggcatcaca	6	13	5	3	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	GTF3C1-94	NM_001520	exon12	c.A1916C	p.K639T	ATCATCTTCTGAA	.	312	7	183	0	.	0	0	0	0	0	G	27512657	T	G	27512657	3	3	49	1	0	0	0	0	1	0	0	0	6893	1609	56	5	4517	5	GTF3C1	16	27512657	Missense_Mutation	SNP	T	TCGA-OR-A5LB-01A-11D-A29I-10	5384176	27512657	62842096	249	9953										
ATP2A1	487	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr16	28909569	28909569	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	cctagggtgcccctgagggcGtcatcgaccgctgtaactat	12	13	1	1	rs200092983		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	ATP2A1-93	NM_004320	exon14	c.G1561A	p.V521I	GAGGGCGTCATCG	.	120	50	71	0	G|0.999;A|0.001	2	2	0	0	0	A	28909569	G	A	28909569	3	1	49	1	0	0	0	0	1	0	0	0	1137	1145	40	1	1615	1	ATP2A1	16	28909569	Missense_Mutation	SNP	G	TCGA-OR-A5LB-01A-11D-A29I-10	1396912	28909569	61445184	250	9954										
LAT	27040	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr16	28996226	28996227	+	Frame_Shift_Ins	INS	-	-	G													0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	caggtggctgtccccgtcttINSggggggggccagcagaccct					novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	LAT-44	NM_001014989	exon1	c.44_45insG	p.L15fs	CCGTCTTGGGGGG	.	58	24	35	0	.	0	0	0	0	0	G	28996227	-	G	28996226	7	5	49	1	0	1	1	0	0	0	0	0	8666	1821	63	0	46	0	LAT	16	28996226	Frame_Shift_Ins	INS	-	TCGA-OR-A5LB-01A-11D-A29I-10	86657	28996226	61358527	251	9955										
BCL7C	9274	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr16	30904237	30904238	+	Frame_Shift_Del	DEL	TC	TC	-													0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	cgacgttcccggccacgggaTctctctgccccgccacctgc					novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	TC	TC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	BCL7C-227	NM_004765	exon3	c.203_204del	p.68_68del	ACGGGATCTCTCT	.	47	22	24	0	.	0	0	0	0	0	-	30904238	TC	-	30904237	7	5	49	1	0	1	0	1	0	0	0	0	1381	1432	50	0	465	0	BCL7C	16	30904237	Frame_Shift_Del	DEL	TC	TCGA-OR-A5LB-01A-11D-A29I-10	1908011	30904237	59450516	252	9956										
WDR59	79726	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr16	74937919	74937919	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	ggggctcccactgtataaacGaaggttcccaggggcctctg	13	12	1	0	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	WDR59-92	NM_030581	exon18	c.C1792T	p.R598C	ATAAACGAAGGTT	.	73	60	100	1	.	6	1	5	0	0	A	74937919	G	A	74937919	3	1	49	1	0	0	0	0	1	0	0	0	17346	1058	37	1	1168	1	WDR59	16	74937919	Missense_Mutation	SNP	G	TCGA-OR-A5LB-01A-11D-A29I-10	44033682	74937919	15416834	253	9957										
PKD1L2	114780	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr16	81164209	81164209	+	RNA	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	gcgctggggtccctctgcccGtaggccacgagcagtagcat	14	14	1	0	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	PKD1L2-92	.	.	.	.	CTGCCCGTAGGCC	.	123	50	116	0	.	0	0	0	0	0	A	81164209	G	A	81164209	1	1	49	0	1	0	0	0	0	0	0	0	11994	1140	40	1		1	PKD1L2	16	81164209	RNA	SNP	G	TCGA-OR-A5LB-01A-11D-A29I-10	6226290	81164209	9190544	254	9958										
ZZEF1	23140	bcgsc.ca	37	chr17	3926110	3926110	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	gaaagtagcacggatctcctCaaaaccgtgagcctgccaag	10	12	2	1	rs711177	byfrequency	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	ZZEF1-93	NM_015113	exon44	c.G7105C	p.E2369Q	TCTCCTCAAAACC	.	136	5	141	0	C|0.870;G|0.130	0	0	0	0	0	G	3926110	C	G	3926110	3	3	49	1	0	0	0	0	1	0	0	0	18292	835	29	3	1828	3	ZZEF1	17	3926110	Missense_Mutation	SNP	C	TCGA-OR-A5LB-01A-11D-A29I-10		3926110	77269100	255	9959										
SMTNL2	342527	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr17	4497117	4497119	+	In_Frame_Del	DEL	AGA	AGA	-													0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	tctccctctctcttccacagAgaagaattcctctttcacgt					novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	AGA	AGA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	SMTNL2-90	NM_001114974	exon4	c.731_733del	p.244_245del	CCACAGAGAAGAA	.	69	16	79	0	.	0	0	0	0	0	-	4497119	AGA	-	4497117	7	5	49	1	0	1	0	1	0	0	0	0	14851	318	11	0	745	0	SMTNL2	17	4497117	In_Frame_Del	DEL	AGA	TCGA-OR-A5LB-01A-11D-A29I-10	571007	4497117	76698093	256	9960										
ACAP1	9744	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	7251702	7251702	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	gctgcctgagattcgagggcGaagaggtggccgggggcgcc	20	10	0	2	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	ACAP1-153	NM_014716	exon17	c.G1586A	p.R529Q	GAGGGCGAAGAGG	.	88	77	72	0	.	0	0	0	0	0	A	7251702	G	A	7251702	3	1	49	1	0	0	0	0	1	0	0	0	118	1058	37	1	1652	1	ACAP1	17	7251702	Missense_Mutation	SNP	G	TCGA-OR-A5LB-01A-11D-A29I-10	2754585	7251702	73943508	257	9961										
NLGN2	57555	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr17	7318830	7318830	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	ccctgaccccttctccccagCtaccacatcgcctttgggcc	6	21	1	1	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	NLGN2-90	NM_020795	exon6	c.C1038T	p.R346R	CCCCAGCTACCAC	.	224	12	160	0	.	0	0	0	0	0	T	7318830	C	T	7318830	2	4	49	1	0	0	0	0	0	0	0	1	10491	811	28	3		3	NLGN2	17	7318830	Silent	SNP	C	TCGA-OR-A5LB-01A-11D-A29I-10	67128	7318830	73876380	258	9962										
MYOCD	93649	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	12649333	12649333	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	aaaacagtttttctggacaaActggtgtctcttctttcaaa	6	8	4	0	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	MYOCD-93	NM_001146312	exon9	c.A1069G	p.T357A	GGACAAACTGGTG	.	98	94	75	0	.	0	0	0	0	0	G	12649333	A	G	12649333	3	3	49	1	0	0	0	0	1	0	0	0	10115	43	2	4	1103	4	MYOCD	17	12649333	Missense_Mutation	SNP	A	TCGA-OR-A5LB-01A-11D-A29I-10	5330503	12649333	68545877	259	9963										
SLFN12	55106	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	33747391	33747391	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	agatcacctcttcatatgaaCtggaaaattcttaaaaacaa	4	8	4	2	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	SLFN12-91	NM_018042	exon3	c.G1049A	p.S350N	TATGAACTGGAAA	.	73	59	87	0	.	1	0	1	0	0	T	33747391	C	T	33747391	3	4	49	1	0	0	0	0	1	0	0	0	14769	565	20	3	695	3	SLFN12	17	33747391	Missense_Mutation	SNP	C	TCGA-OR-A5LB-01A-11D-A29I-10	21098058	33747391	47447819	260	9964										
C17orf66	256957	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	34191866	34191866	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	tgggagatggaacattttgaTgtgggtttgatgtacctctt	13	4	1	3	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	C17orf66-155	NM_152781	exon4	c.A349T	p.I117F	TTTTGATGTGGGT	.	241	215	233	0	.	0	0	0	0	0	A	34191866	T	A	34191866	3	1	49	1	0	0	0	0	1	0	0	0	1879	1464	51	5	1411	5	C17orf66	17	34191866	Missense_Mutation	SNP	T	TCGA-OR-A5LB-01A-11D-A29I-10	444475	34191866	47003344	261	9965										
MPP3	4356	broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr17	41879215	41879215	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	atgccggtctatgaaggcggCagaagcggccatctcttgct	13	11	2	2	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	MPP3-91	NM_001932	exon20	c.G1612A	p.A538T	AGGCGGCAGAAGC	.	50	44	46	1	.	0	0	0	0	0	T	41879215	C	T	41879215	3	4	49	1	0	0	0	0	1	0	0	0	9763	710	25	3	149	3	MPP3	17	41879215	Missense_Mutation	SNP	C	TCGA-OR-A5LB-01A-11D-A29I-10	7687349	41879215	39315995	262	9966										
MAP3K14	9020	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	43347830	43347830	+	RNA	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	ccagctccgctgcagacacgCggtggatgggctctttcctc	12	15	1	1	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	MAP3K14-1453	.	.	.	.	GACACGCGGTGGA	.	143	70	66	0	.	7	0	7	0	0	T	43347830	C	T	43347830	1	4	49	0	1	0	0	0	0	0	0	0	9276	768	27	1		1	MAP3K14	17	43347830	RNA	SNP	C	TCGA-OR-A5LB-01A-11D-A29I-10	1468615	43347830	37847380	263	9967										
HOXB13	10481	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr17	46805884	46805884	+	Frame_Shift_Del	DEL	C	C	-													0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	gagtgggcgaccagattccgCccccctcccgctcccagcaa					novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	HOXB13-514	NM_006361	exon1	c.72delG	p.G24fs	ATTCCGCCCCCCT	.	133	111	122	0	.	0	0	0	0	0	-	46805884	C	-	46805884	7	5	49	1	0	1	0	1	0	0	0	0	7321	726	26	0	790	0	HOXB13	17	46805884	Frame_Shift_Del	DEL	C	TCGA-OR-A5LB-01A-11D-A29I-10	3458054	46805884	34389326	264	9968										
NGFR	4804	hgsc.bcm.edu	37	chr17	47583762	47583762	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	cgccgtgcgtggaggccgacGacgccgtgtgccgctgcgcc	17	16	0	0	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	NGFR-947	NM_002507	exon3	c.G310A	p.D104N	GCCGACGACGCCG	.	13	11	0	0	.	0	0	0	0	0	A	47583762	G	A	47583762	3	1	49	1	0	0	0	0	1	0	0	0	10425	1058	37	1	320	1	NGFR	17	47583762	Missense_Mutation	SNP	G	TCGA-OR-A5LB-01A-11D-A29I-10	777878	47583762	33611448	265	9969										
PCTP	58488	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	53851112	53851112	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	accttcggcagcggcgagacCtggacatggaagggaggaag	17	9	0	1	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	PCTP-91	NM_021213	exon4	c.C367G	p.L123V	CGAGACCTGGACA	.	158	143	137	0	.	4	0	4	0	0	G	53851112	C	G	53851112	3	3	49	1	0	0	0	0	1	0	0	0	11636	680	24	3	381	3	PCTP	17	53851112	Missense_Mutation	SNP	C	TCGA-OR-A5LB-01A-11D-A29I-10	6267350	53851112	27344098	266	9970										
ANKFN1	162282	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr17	54543810	54543810	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	tagtcaccatcagggaggtgGagatgctttattcatttttt	10	6	3	1	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	ANKFN1-136	NM_153228	exon14	c.G1660A	p.E554K	GAGGTGGAGATGC	.	191	10	168	0	.	0	0	0	0	0	A	54543810	G	A	54543810	3	1	49	1	0	0	0	0	1	0	0	0	625	1175	41	3	1714	3	ANKFN1	17	54543810	Missense_Mutation	SNP	G	TCGA-OR-A5LB-01A-11D-A29I-10	692698	54543810	26651400	267	9971										
PRKCA	5578	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr17	64731690	64731690	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	gtggtgattcaggatgatgaCgtggagtgcaccatggtaga	16	5	1	4	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	PRKCA-1404	NM_002737	exon10	c.C1140T	p.D380D	TGATGACGTGGAG	.	249	228	276	2	.	4	0	4	0	0	T	64731690	C	T	64731690	2	4	49	1	0	0	0	0	0	0	0	1	12539	535	19	1		1	PRKCA	17	64731690	Silent	SNP	C	TCGA-OR-A5LB-01A-11D-A29I-10	10187880	64731690	16463520	268	9972										
DNAH17	8632	bcgsc.ca	37	chr17	76497920	76497920	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	tcgccagcgttgaggttcccCatgagcagcgtgatgagtac	13	11	0	4	rs690844	byfrequency	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	DNAH17-142	NM_173628	exon34	c.G5226T	p.M1742I	GTTCCCCATGAGC	.	120	5	122	1	C|0.273;A|0.727	0	0	0	0	0	A	76497920	C	A	76497920	3	1	49	1	0	0	0	0	1	0	0	0	4612	594	21	3	8354	3	DNAH17	17	76497920	Missense_Mutation	SNP	C	TCGA-OR-A5LB-01A-11D-A29I-10	11766230	76497920	4697290	269	9973										
RPTOR	57521	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	78933974	78933974	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	tcggtgacggctccatccgcGtctacgacagaaggatggca	13	12	1	2	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	RPTOR-847	NM_020761	exon30	c.G3574A	p.V1192I	ATCCGCGTCTACG	.	211	44	203	0	.	13	9	4	0	0	A	78933974	G	A	78933974	3	1	49	1	0	0	0	0	1	0	0	0	13700	1145	40	1	3692	1	RPTOR	17	78933974	Missense_Mutation	SNP	G	TCGA-OR-A5LB-01A-11D-A29I-10	2436054	78933974	2261236	270	9974										
RAB40B	10966	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	80616520	80616520	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	gtaggcctgggcctgctccgTgggcacctgccgcttgaacg	15	14	0	1	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	RAB40B-227	NM_006822	exon5	c.A412G	p.T138A	GCTCCGTGGGCAC	.	80	56	63	1	.	6	0	6	0	0	C	80616520	T	C	80616520	3	2	49	1	0	0	0	0	1	0	0	0	12976	1696	59	4	432	4	RAB40B	17	80616520	Missense_Mutation	SNP	T	TCGA-OR-A5LB-01A-11D-A29I-10	1682546	80616520	578690	271	9975										
MPPE1	65258	broad.mit.edu	37	chr18	11889445	11889445	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	ttcagctgtacatgacttggGtgtctgaacattttctgaaa	9	7	3	3	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	MPPE1-90	NM_001242904	exon4	c.C435A	p.H145Q	ACTTGGGTGTCTG	.	83	4	91	0	.	18	18	0	0	0	T	11889445	G	T	11889445	3	4	49	1	0	0	0	0	1	0	0	0	9768	1252	44	3	783	3	MPPE1	18	11889445	Missense_Mutation	SNP	G	TCGA-OR-A5LB-01A-11D-A29I-10		11889445	66187803	272	9976										
ABHD3	171586	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr18	19244151	19244151	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	gtacatggtgaataactgtcTccaagtcttcagtgttagca	9	8	3	1	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	ABHD3-90	NM_138340	exon5	c.A596C	p.E199A	ACTGTCTCCAAGT	.	79	68	89	0	.	2	0	2	0	0	G	19244151	T	G	19244151	3	3	49	1	0	0	0	0	1	0	0	0	83	1551	54	5	653	5	ABHD3	18	19244151	Missense_Mutation	SNP	T	TCGA-OR-A5LB-01A-11D-A29I-10	7354706	19244151	58833097	273	9977										
ZNF521	25925	broad.mit.edu;bcgsc.ca	37	chr18	22806811	22806811	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	gagaggttggaatctggagtCgtactggacacggaggtata	16	5	1	1	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	ZNF521-275	NM_015461	exon4	c.G1071A	p.T357T	TGGAGTCGTACTG	.	73	5	68	1	.	13	13	0	0	0	T	22806811	C	T	22806811	2	4	49	1	0	0	0	0	0	0	0	1	18002	871	31	1		1	ZNF521	18	22806811	Silent	SNP	C	TCGA-OR-A5LB-01A-11D-A29I-10	3562660	22806811	55270437	274	9978										
SLC39A6	25800	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr18	33706547	33706547	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	gtctgggcaaagagcttttcGcttatttttaccagaagcag	10	8	1	2	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	SLC39A6-92	NM_012319	exon2	c.C424T	p.R142X	CTTTTCGCTTATT	.	234	203	221	1	.	3	0	3	0	0	A	33706547	G	A	33706547	4	1	49	1	0	0	0	0	0	1	0	0	14657	1095	38	1	1891	1	SLC39A6	18	33706547	Nonsense_Mutation	SNP	G	TCGA-OR-A5LB-01A-11D-A29I-10	10899736	33706547	44370701	275	9979										
FHOD3	80206	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr18	34289245	34289245	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	agtgaaaaagagaggcagaaCgagggggtgaacgagaggga	19	3	0	5	rs141915411		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	FHOD3-139	NM_025135	exon15	c.C1899T	p.N633N	GCAGAACGAGGGG	.	226	196	209	2	C|0.999;T|0.000	13	0	13	0	0	T	34289245	C	T	34289245	2	4	49	1	0	0	0	0	0	0	0	1	5902	535	19	1		1	FHOD3	18	34289245	Silent	SNP	C	TCGA-OR-A5LB-01A-11D-A29I-10	582698	34289245	43788003	276	9980										
PIAS2	9063	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr18	44470593	44470593	+	Frame_Shift_Del	DEL	T	T	-													0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	ggacatcataaaagggcagaTtttttaactgcacatcagga					novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	PIAS2-662	NM_173206	exon2	c.449delA	p.N150fs	GGCAGATTTTTTA	.	277	241	260	0	.	0	0	0	0	0	-	44470593	T	-	44470593	7	5	49	1	0	1	0	1	0	0	0	0	11905	1493	52	0	1543	0	PIAS2	18	44470593	Frame_Shift_Del	DEL	T	TCGA-OR-A5LB-01A-11D-A29I-10	10181348	44470593	33606655	277	9981										
ADNP2	22850	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr18	77893731	77893732	+	Frame_Shift_Del	DEL	TA	TA	-													0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	gtgaatattttaggtgaaacTaaatcatctaggagcgatgt					novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	TA	TA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	ADNP2-140	NM_014913	exon4	c.435_436del	p.145_146del	TGAAACTAAATCA	.	103	94	110	0	.	0	0	0	0	0	-	77893732	TA	-	77893731	7	5	49	1	0	1	0	1	0	0	0	0	324	1509	53	0	445	0	ADNP2	18	77893731	Frame_Shift_Del	DEL	TA	TCGA-OR-A5LB-01A-11D-A29I-10	33423138	77893731	183517	278	9982										
LMNB2	84823	ucsc.edu;bcgsc.ca	37	chr19	2438488	2438488	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	gggactccaggtccttcacaCggccctgggccaccgtaagc	12	16	1	0	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	LMNB2-290	NM_032737	exon3	c.G443A	p.R148H	TTCACACGGCCCT	.	806	359	320	2	.	3	1	2	0	0	T	2438488	C	T	2438488	3	4	49	1	0	0	0	0	1	0	0	0	8874	536	19	1	1459	1	LMNB2	19	2438488	Missense_Mutation	SNP	C	TCGA-OR-A5LB-01A-11D-A29I-10		2438488	56690495	279	9983										
CHAF1A	10036	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	4409751	4409751	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	tccccacctccacgcccctcCgcagagtgagtatctcccat	6	20	1	2	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	CHAF1A-92	NM_005483	exon3	c.C955T	p.R319C	CCCCTCCGCAGAG	.	117	49	79	0	.	0	0	0	0	0	T	4409751	C	T	4409751	3	4	49	1	0	0	0	0	1	0	0	0	3317	652	23	1	965	1	CHAF1A	19	4409751	Missense_Mutation	SNP	C	TCGA-OR-A5LB-01A-11D-A29I-10	1971263	4409751	54719232	280	9984										
KDM4B	23030	hgsc.bcm.edu	37	chr19	5151503	5151503	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	cctcctgcaggtgcagggccGgcccggagcccccttctagg	14	17	1	0	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	KDM4B-226	NM_015015	exon23	c.G3272T	p.R1091L	AGGGCCGGCCCGG	.	43	5	9	0	.	27	27	0	0	0	T	5151503	G	T	5151503	3	4	49	1	0	0	0	0	1	0	0	0	8150	1116	39	2	3354	2	KDM4B	19	5151503	Missense_Mutation	SNP	G	TCGA-OR-A5LB-01A-11D-A29I-10	741752	5151503	53977480	281	9985										
FUT6	2528	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	5831871	5831871	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	tagaacttgtaccgggacagCgtctccatcatggttccctg	10	12	2	1	rs141754965		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	FUT6-90	NM_000150	exon3	c.G708A	p.T236T	GGACAGCGTCTCC	.	663	282	325	1	C|1.000;T|0.000	0	0	0	0	0	T	5831871	C	T	5831871	2	4	49	1	0	0	0	0	0	0	0	1	6127	755	27	1		1	FUT6	19	5831871	Silent	SNP	C	TCGA-OR-A5LB-01A-11D-A29I-10	680368	5831871	53297112	282	9986										
PSPN	5623	bcgsc.ca	37	chr19	6375624	6375624	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	ggcgggcaagggggcggtggGtgcctgtgggagggaagggc	26	6	0	0	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	PSPN-91	NM_004158	exon2	c.C152T	p.T51I	CGGTGGGTGCCTG	.	407	200	132	4	.	6	4	2	0	0	A	6375624	G	A	6375624	3	1	49	1	0	0	0	0	1	0	0	0	12750	1261	44	3	321	3	PSPN	19	6375624	Missense_Mutation	SNP	G	TCGA-OR-A5LB-01A-11D-A29I-10	543753	6375624	52753359	283	9987										
VAV1	7409	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	6822269	6822269	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	atgaggacctgtatgactgcGtggagaatgaggaggcggaa	17	5	0	4	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	VAV1-1276	NM_005428	exon5	c.G487A	p.V163M	GACTGCGTGGAGA	.	411	54	148	1	.	0	0	0	0	0	A	6822269	G	A	6822269	3	1	49	1	0	0	0	0	1	0	0	0	17169	1145	40	1	505	1	VAV1	19	6822269	Missense_Mutation	SNP	G	TCGA-OR-A5LB-01A-11D-A29I-10	446645	6822269	52306714	284	9988										
PNPLA6	10908	hgsc.bcm.edu;broad.mit.edu	37	chr19	7605851	7605851	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	ccgtgtctgcccgggcggccCgggactccacggtgctgcgc	16	17	1	0	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	PNPLA6-47	NM_001166111	exon9	c.C865T	p.R289W	GCGGCCCGGGACT	.	203	14	40	0	.	10	10	0	0	0	T	7605851	C	T	7605851	3	4	49	1	0	0	0	0	1	0	0	0	12198	643	23	1	895	1	PNPLA6	19	7605851	Missense_Mutation	SNP	C	TCGA-OR-A5LB-01A-11D-A29I-10	783582	7605851	51523132	285	9989										
TIMM44	10469	broad.mit.edu	37	chr19	7998852	7998852	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	gggcccggtctgtcccaggaCgctgtcgtcaatttccttct	11	14	3	0	rs147925283	byfrequency	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	TIMM44-91	NM_006351	exon6	c.G580A	p.V194I	CCAGGACGCTGTC	.	109	4	56	0	C|0.999;T|0.001	84	83	1	0	0	T	7998852	C	T	7998852	3	4	49	1	0	0	0	0	1	0	0	0	15949	536	19	1	810	1	TIMM44	19	7998852	Missense_Mutation	SNP	C	TCGA-OR-A5LB-01A-11D-A29I-10	393001	7998852	51130131	286	9990										
FBN3	84467	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	8206917	8206917	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	acatggaaggccccaggcacGgcccacagtggcacagcaaa	12	14	0	0	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	FBN3-100	NM_032447	exon6	c.C646T	p.R216C	AGGCACGGCCCAC	.	163	50	99	0	.	0	0	0	0	0	A	8206917	G	A	8206917	3	1	49	1	0	0	0	0	1	0	0	0	5723	1116	39	1	8015	1	FBN3	19	8206917	Missense_Mutation	SNP	G	TCGA-OR-A5LB-01A-11D-A29I-10	208065	8206917	50922066	287	9991										
MYO1F	4542	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr19	8587291	8587291	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	gatctcaatgacctcgttcaCgttgaagctcagctcgtcca	8	13	3	2	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	MYO1F-93	NM_012335	exon27	c.G3190A	p.V1064M	CGTTCACGTTGAA	.	259	13	91	0	.	4	4	0	0	0	T	8587291	C	T	8587291	3	4	49	1	0	0	0	0	1	0	0	0	10101	536	19	1	114	1	MYO1F	19	8587291	Missense_Mutation	SNP	C	TCGA-OR-A5LB-01A-11D-A29I-10	380374	8587291	50541692	288	9992										
ICAM1	3383	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	10394443	10394443	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	tttgagaacacctcggccccCtaccagctccagacctttgg	8	16	0	2	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	ICAM1-91	NM_000201	exon3	c.C618A	p.P206P	GGCCCCCTACCAG	.	100	39	57	0	.	2	2	0	0	0	A	10394443	C	A	10394443	2	1	49	1	0	0	0	0	0	0	0	1	7500	668	24	3		3	ICAM1	19	10394443	Silent	SNP	C	TCGA-OR-A5LB-01A-11D-A29I-10	1807152	10394443	48734540	289	9993										
S1PR5	53637	broad.mit.edu;bcgsc.ca	37	chr19	10624719	10624719	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	ctgccgcaggagtggcgtccGcagcagaccaggcgcaggag	17	13	0	1	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	S1PR5-523	NM_030760	exon2	c.C969A	p.C323X	GCGTCCGCAGCAG	.	193	6	44	0	.	0	0	0	0	0	T	10624719	G	T	10624719	4	4	49	1	0	0	0	0	0	1	0	0	13832	1079	38	2	231	2	S1PR5	19	10624719	Nonsense_Mutation	SNP	G	TCGA-OR-A5LB-01A-11D-A29I-10	230276	10624719	48504264	290	9994										
LPHN1	22859	hgsc.bcm.edu;bcgsc.ca	37	chr19	14272167	14272167	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	ctctccaccagcatgccctgCtgggtggccggccactggac	12	17	1	0	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	LPHN1-523	NM_001008701	exon7	c.G1482A	p.Q494Q	GCCCTGCTGGGTG	.	142	64	34	0	.	4	1	3	0	0	T	14272167	C	T	14272167	2	4	49	1	0	0	0	0	0	0	0	1	8942	796	28	3		3	LPHN1	19	14272167	Silent	SNP	C	TCGA-OR-A5LB-01A-11D-A29I-10	3647448	14272167	44856816	291	9995										
CD97	976	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	14515325	14515325	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	cggcagcaccacctgccaatGcagccacctgagcagctttg	10	16	0	1	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	CD97-570	NM_078481	exon13	c.G1580A	p.C527Y	GCCAATGCAGCCA	.	261	54	101	0	.	1	1	0	0	0	A	14515325	G	A	14515325	3	1	49	1	0	0	0	0	1	0	0	0	3055	1319	46	3	1630	3	CD97	19	14515325	Missense_Mutation	SNP	G	TCGA-OR-A5LB-01A-11D-A29I-10	243158	14515325	44613658	292	9996										
EMR2	30817	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	14854448	14854448	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	ctgctggctgaggaggcagtAcaccaggaagatgaagacac	14	9	0	4	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	EMR2-524	NM_013447	exon19	c.T2332C	p.Y778H	GGCAGTACACCAG	.	454	87	245	0	.	0	0	0	0	0	G	14854448	A	G	14854448	3	3	49	1	0	0	0	0	1	0	0	0	5118	391	14	4	151	4	EMR2	19	14854448	Missense_Mutation	SNP	A	TCGA-OR-A5LB-01A-11D-A29I-10	339123	14854448	44274535	293	9997										
AKAP8	10270	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr19	15484604	15484604	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	ggtccataatcacctctcccGgtcctgtatgccctccccac	6	19	2	0	rs140271912		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	AKAP8-290	NM_005858	exon4	c.C364T	p.R122W	TCTCCCGGTCCTG	.	78	35	37	0	G|1.000;A|0.000	0	0	0	0	0	A	15484604	G	A	15484604	3	1	49	1	0	0	0	0	1	0	0	0	457	1115	39	1	1758	1	AKAP8	19	15484604	Missense_Mutation	SNP	G	TCGA-OR-A5LB-01A-11D-A29I-10	630156	15484604	43644379	294	9998										
OR10H5	284433	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	15905080	15905080	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	atcaccgagatcctctacacCgtggccatcatcccgcgcat	7	17	3	1	rs201176627		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	OR10H5-69	NM_001004466	exon1	c.C222T	p.T74T	CTACACCGTGGCC	.	766	330	338	3	C|0.999;T|0.001	0	0	0	0	0	T	15905080	C	T	15905080	2	4	49	1	0	0	0	0	0	0	0	1	10938	639	23	1		1	OR10H5	19	15905080	Silent	SNP	C	TCGA-OR-A5LB-01A-11D-A29I-10	420476	15905080	43223903	295	9999										
SLC5A5	6528	broad.mit.edu;bcgsc.ca	37	chr19	17994831	17994831	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	ggacccggctctcctccctgCtaacgactccagcagggccc	10	19	1	0	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	SLC5A5-93	NM_000453	exon12	c.C1502T	p.A501V	TCCCTGCTAACGA	.	162	76	68	2	.	0	0	0	0	0	T	17994831	C	T	17994831	3	4	49	1	0	0	0	0	1	0	0	0	14703	797	28	3	1548	3	SLC5A5	19	17994831	Missense_Mutation	SNP	C	TCGA-OR-A5LB-01A-11D-A29I-10	2089751	17994831	41134152	296	10000										
ARRDC2	27106	broad.mit.edu	37	chr19	18119374	18119374	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	gtggaggtcgtgagccaccgCgccacgctcctggcgccagg	16	15	0	1	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	ARRDC2-91	NM_015683	exon1	c.C255T	p.R85R	CCACCGCGCCACG	.	30	4	16	0	.	12	10	2	0	0	T	18119374	C	T	18119374	2	4	49	1	0	0	0	0	0	0	0	1	984	755	27	1		1	ARRDC2	19	18119374	Silent	SNP	C	TCGA-OR-A5LB-01A-11D-A29I-10	124543	18119374	41009609	297	10001										
TMEM161A	54929	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	19243492	19243492	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	catccacggtcgtgagggggCaggtctccagctggaacggg	17	11	1	1	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	TMEM161A-154	NM_001256766	exon4	c.G260T	p.C87F	AGGGGGCAGGTCT	.	119	20	59	0	.	152	122	30	0	0	A	19243492	C	A	19243492	3	1	49	1	0	0	0	0	1	0	0	0	16113	710	25	3	1215	3	TMEM161A	19	19243492	Missense_Mutation	SNP	C	TCGA-OR-A5LB-01A-11D-A29I-10	1124118	19243492	39885491	298	10002										
ZNF486	90649	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr19	20308051	20308052	+	Frame_Shift_Ins	INS	-	-	A													0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	acataaaagaagacatactgINSaaaaaaaacctttgaaatat					novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	ZNF486-47	NM_052852	exon4	c.532_533insA	p.E178fs	CATACTGAAAAAA	.	98	44	87	0	.	0	0	0	0	0	A	20308052	-	A	20308051	7	5	49	1	0	1	1	0	0	0	0	0	17976	1291	45	0	546	0	ZNF486	19	20308051	Frame_Shift_Ins	INS	-	TCGA-OR-A5LB-01A-11D-A29I-10	1064559	20308051	38820932	299	10003										
SLC7A10	56301	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	33706703	33706703	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	gcccccgaagatctctgtgaCgtaggcgtagtccccgccag	12	15	1	2	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	SLC7A10-91	NM_019849	exon2	c.G328A	p.V110I	CTGTGACGTAGGC	.	158	36	85	0	.	0	0	0	0	0	T	33706703	C	T	33706703	3	4	49	1	0	0	0	0	1	0	0	0	14728	536	19	1	1283	1	SLC7A10	19	33706703	Missense_Mutation	SNP	C	TCGA-OR-A5LB-01A-11D-A29I-10	13398652	33706703	25422280	300	10004										
COX6B1	1340	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	36145482	36145482	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	tttcttcacagacttccaccGctgtcagaaggcaatgaccg	8	13	3	3	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	COX6B1-226	NM_001863	exon3	c.G116A	p.R39H	TCCACCGCTGTCA	.	301	57	167	0	.	0	0	0	0	0	A	36145482	G	A	36145482	3	1	49	1	0	0	0	0	1	0	0	0	3782	1087	38	1	122	1	COX6B1	19	36145482	Missense_Mutation	SNP	G	TCGA-OR-A5LB-01A-11D-A29I-10	2438779	36145482	22983501	301	10005										
MLL4	8085	hgsc.bcm.edu;broad.mit.edu	37	chr19	36223002	36223002	+	Frame_Shift_Del	DEL	G	G	-													0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	tcgccatcccggaggcccttGgggggtgtctcctttggccc					novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	MLL4-697	NM_014727	exon27	c.5631delG	p.L1877fs	GCCCTTGGGGGGT	.	40	10	33	0	.	0	0	0	0	0	-	36223002	G	-	36223002	7	5	49	1	0	1	0	1	0	0	0	0	9651	1339	47	0	5737	0	MLL4	19	36223002	Frame_Shift_Del	DEL	G	TCGA-OR-A5LB-01A-11D-A29I-10	77520	36223002	22905981	302	10006										
LRFN3	79414	hgsc.bcm.edu	37	chr19	36431134	36431134	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	ctggcgcgggaggacgacctCgaggcctgcgcgtccccacc	15	17	0	0	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	LRFN3-90	NM_024509	exon2	c.C807T	p.L269L	CGACCTCGAGGCC	.	18	5	4	0	.	12	12	0	0	0	T	36431134	C	T	36431134	2	4	49	1	0	0	0	0	0	0	0	1	8966	871	31	1		1	LRFN3	19	36431134	Silent	SNP	C	TCGA-OR-A5LB-01A-11D-A29I-10	208132	36431134	22697849	303	10007										
ZNF529	57711	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	37038306	37038306	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	tcttaccagtatgaattctcTgatgacgagcaagttctcta	7	9	3	3	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	ZNF529-67	NM_001145649	exon6	c.A1154C	p.Q385P	ATTCTCTGATGAC	.	102	57	49	0	.	1	1	0	0	0	G	37038306	T	G	37038306	3	3	49	1	0	0	0	0	1	0	0	0	18007	1580	55	5	541	5	ZNF529	19	37038306	Missense_Mutation	SNP	T	TCGA-OR-A5LB-01A-11D-A29I-10	607172	37038306	22090677	304	10008										
RYR1	6261	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr19	38939333	38939333	+	Frame_Shift_Del	DEL	C	C	-													0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	cgggatgtggagggcatgggCccccctgagatcaagtacgg					novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	RYR1-100	NM_001042723	exon11	c.1002delC	p.G334fs	CATGGGCCCCCCT	.	344	136	166	0	.	0	0	0	0	0	-	38939333	C	-	38939333	7	5	49	1	0	1	0	1	0	0	0	0	13803	726	26	0	1044	0	RYR1	19	38939333	Frame_Shift_Del	DEL	C	TCGA-OR-A5LB-01A-11D-A29I-10	1901027	38939333	20189650	305	10009										
RYR1	6261	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	39018334	39018334	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	cagatggctctgtaccggggCgtcccgggtcgcgaggagga	18	11	1	1	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	RYR1-100	NM_000540	exon73	c.C10734T	p.G3578G	CCGGGGCGTCCCG	.	374	195	161	1	.	0	0	0	0	0	T	39018334	C	T	39018334	2	4	49	1	0	0	0	0	0	0	0	1	13803	755	27	1		1	RYR1	19	39018334	Silent	SNP	C	TCGA-OR-A5LB-01A-11D-A29I-10	79001	39018334	20110649	306	10010										
FBXO27	126433	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	39521937	39521937	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	ccagccgtccccaccgtgttGcaccatccactttcggaggc	9	18	0	0	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	FBXO27-227	NM_178820	exon3	c.C388T	p.Q130X	CGTGTTGCACCAT	.	269	50	142	0	.	0	0	0	0	0	A	39521937	G	A	39521937	4	1	49	1	0	0	0	0	0	1	0	0	5756	1328	46	3	479	3	FBXO27	19	39521937	Nonsense_Mutation	SNP	G	TCGA-OR-A5LB-01A-11D-A29I-10	503603	39521937	19607046	307	10011										
FCGBP	8857	ucsc.edu;bcgsc.ca	37	chr19	40362754	40362754	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	cctccagggcttcacggccaCgccagctgcctgacaggccg	12	18	1	1	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	FCGBP-98	NM_003890	exon32	c.G15316A	p.V5106M	CGGCCACGCCAGC	.	509	241	172	3	.	2	1	1	0	0	T	40362754	C	T	40362754	3	4	49	1	0	0	0	0	1	0	0	0	5797	536	19	1	921	1	FCGBP	19	40362754	Missense_Mutation	SNP	C	TCGA-OR-A5LB-01A-11D-A29I-10	840817	40362754	18766229	308	10012										
PRX	57716	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	40900691	40900691	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	tccaggcagagacagggtcaCctggggcacctgaaccctgt	13	13	1	2	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	PRX-92	NM_181882	exon7	c.G3568A	p.V1190M	GGGTCACCTGGGG	.	225	107	87	1	.	12	6	6	0	0	T	40900691	C	T	40900691	3	4	49	1	0	0	0	0	1	0	0	0	12674	507	18	3	821	3	PRX	19	40900691	Missense_Mutation	SNP	C	TCGA-OR-A5LB-01A-11D-A29I-10	537937	40900691	18228292	309	10013										
LIPE	3991	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr19	42914911	42914913	+	In_Frame_Del	DEL	AGA	AGA	-													0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	ttccccaggaccctggctcgAgaagaaggctatgttgtcct					novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	AGA	AGA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	LIPE-154	NM_005357	exon2	c.965_967del	p.322_323del	GGCTCGAGAAGAA	.	82	70	51	0	.	0	0	0	0	0	-	42914913	AGA	-	42914911	7	5	49	1	0	1	0	1	0	0	0	0	8845	304	11	0	2299	0	LIPE	19	42914911	In_Frame_Del	DEL	AGA	TCGA-OR-A5LB-01A-11D-A29I-10	2014220	42914911	16214072	310	10014										
PSG6	5675	hgsc.bcm.edu	37	chr19	43421937	43421937	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	tgcagggaggggctgagaggGgtcccatggtctctgctgtc	18	9	1	1	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	PSG6-92	NM_001031850	exon1	c.C8T	p.P3L	GAGAGGGGTCCCA	.	65	5	27	0	.	0	0	0	0	0	A	43421937	G	A	43421937	3	1	49	1	0	0	0	0	1	0	0	0	12691	1232	43	3	1362	3	PSG6	19	43421937	Missense_Mutation	SNP	G	TCGA-OR-A5LB-01A-11D-A29I-10	507026	43421937	15707046	311	10015										
NKPD1	284353	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr19	45655516	45655516	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	cacggtgaaggggaagtcggCgcccaggaagcgctcgaaga	17	10	0	2	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	NKPD1-68	NM_198478	exon4	c.G2179A	p.A727T	AGTCGGCGCCCAG	.	165	27	34	0	.	0	0	0	0	0	T	45655516	C	T	45655516	3	4	49	1	0	0	0	0	1	0	0	0	10475	768	27	1	323	1	NKPD1	19	45655516	Missense_Mutation	SNP	C	TCGA-OR-A5LB-01A-11D-A29I-10	2233579	45655516	13473467	312	10016										
ERCC1	2067	broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr19	45922382	45922382	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	cacctggacaagcaggacccGcaaggcgaagttcttcccca	10	15	1	0	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	ERCC1-659	NM_001983	exon5	c.C499T	p.R167W	GGACCCGCAAGGC	.	73	25	40	1	.	81	59	22	0	0	A	45922382	G	A	45922382	3	1	49	1	0	0	0	0	1	0	0	0	5225	1086	38	1	547	1	ERCC1	19	45922382	Missense_Mutation	SNP	G	TCGA-OR-A5LB-01A-11D-A29I-10	266866	45922382	13206601	313	10017										
RTN2	6253	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr19	45996512	45996513	+	Frame_Shift_Ins	INS	-	-	G													0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	gaacccggaggacaggagtaINSgggggggtggggcccctttg					novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	RTN2-93	NM_005619	exon5	c.939_940insC	p.P313fs	AGGAGTAGGGGGG	.	82	39	44	0	.	0	0	0	0	0	G	45996513	-	G	45996512	7	5	49	1	0	1	1	0	0	0	0	0	13761	407	15	0	726	0	RTN2	19	45996512	Frame_Shift_Ins	INS	-	TCGA-OR-A5LB-01A-11D-A29I-10	74130	45996512	13132471	314	10018										
GRIN2D	2906	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	chr19	48918195	48918195	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	cgacattctgaagcggctggCgcataccatcggcttcagct	11	13	2	1	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	GRIN2D-156	NM_000836	exon6	c.C1487T	p.A496V	GGCTGGCGCATAC	.	335	136	160	0	.	0	0	0	0	0	T	48918195	C	T	48918195	3	4	49	1	0	0	0	0	1	0	0	0	6803	768	27	1	1505	1	GRIN2D	19	48918195	Missense_Mutation	SNP	C	TCGA-OR-A5LB-01A-11D-A29I-10	2921683	48918195	10210788	315	10019										
PTOV1	53635	hgsc.bcm.edu;bcgsc.ca	37	chr19	50360301	50360303	+	In_Frame_Del	DEL	AAG	AAG	-													0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	tcatgctcctgtactcgtccAagaagaagatcttcatgggc					novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	AAG	AAG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	PTOV1-226	NM_017432	exon6	c.628_630del	p.210_210del	TCGTCCAAGAAGA	.	337	144	163	1	.	0	0	0	0	0	-	50360303	AAG	-	50360301	7	5	49	1	0	1	0	1	0	0	0	0	12802	131	5	0	650	0	PTOV1	19	50360301	In_Frame_Del	DEL	AAG	TCGA-OR-A5LB-01A-11D-A29I-10	1442106	50360301	8768682	316	10020										
LRRC4B	94030	hgsc.bcm.edu	37	chr19	51051969	51051969	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	ccctccggcggcagacgtcaCggccactccacctccaccgg	10	21	1	1	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	LRRC4B-205	NM_001080457	exon2	c.G127A	p.V43M	ACGTCACGGCCAC	.	14	7	1	0	.	1	0	1	0	0	T	51051969	C	T	51051969	3	4	49	1	0	0	0	0	1	0	0	0	9034	536	19	1	2022	1	LRRC4B	19	51051969	Missense_Mutation	SNP	C	TCGA-OR-A5LB-01A-11D-A29I-10	691668	51051969	8077014	317	10021										
ZNF841	284371	broad.mit.edu;bcgsc.ca	37	chr19	52568564	52568564	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	aggcaagaccgccgcccaaaCgccttgccacattccataca	7	17	0	1	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	.	NM_001136499	exon7	c.G2571A	p.A857A	CCCAAACGCCTTG	.	320	10	145	0	.	2	2	0	0	0	T	52568564	C	T	52568564	2	4	49	1	0	0	0	0	0	0	0	1	18226	523	19	1		1	ZNF841	19	52568564	Silent	SNP	C	TCGA-OR-A5LB-01A-11D-A29I-10	1516595	52568564	6560419	318	10022										
ZNF160	90338	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	53577421	53577421	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	acgcctttgacacattccggCgttcttggttttcttgctat	8	11	2	1	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	ZNF160-90	NM_001102603	exon6	c.G243A	p.T81T	TTCCGGCGTTCTT	.	175	83	85	0	.	0	0	0	0	0	T	53577421	C	T	53577421	2	4	49	1	0	0	0	0	0	0	0	1	17776	755	27	1		1	ZNF160	19	53577421	Silent	SNP	C	TCGA-OR-A5LB-01A-11D-A29I-10	1008857	53577421	5551562	319	10023										
ZNF444	55311	hgsc.bcm.edu	37	chr19	56658405	56658405	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	ggaggcgctggggctgctccGcgccctgtgccgggactggc	19	14	0	0	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	ZNF444-90	NM_001253792	exon3	c.G125A	p.R42H	TGCTCCGCGCCCT	.	9	8	2	0	.	15	9	6	0	0	A	56658405	G	A	56658405	3	1	49	1	0	0	0	0	1	0	0	0	17954	1087	38	1	127	1	ZNF444	19	56658405	Missense_Mutation	SNP	G	TCGA-OR-A5LB-01A-11D-A29I-10	3080984	56658405	2470578	320	10024										
ZNF211	10520	hgsc.bcm.edu;bcgsc.ca	37	chr19	58153343	58153345	+	In_Frame_Del	DEL	ATT	ATT	-													0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	ttagctgtaaatctaacctcAttaaacacctgagagttcac					novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	ATT	ATT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	ZNF211-92	NM_001265597	exon5	c.1684_1686del	p.562_562del	AACCTCATTAAAC	.	213	104	99	0	.	0	0	0	0	0	-	58153345	ATT	-	58153343	7	5	49	1	0	1	0	1	0	0	0	0	17804	217	8	0	1542	0	ZNF211	19	58153343	In_Frame_Del	DEL	ATT	TCGA-OR-A5LB-01A-11D-A29I-10	1494938	58153343	975640	321	10025										
NOP56	10528	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr20	2637510	2637510	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	tggagagataccacgaaagaAtctggatgtcatgaaggaag	13	5	2	3	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	NOP56-92	NM_006392	exon10	c.A1250T	p.N417I	GAAAGAATCTGGA	.	304	138	128	0	.	101	56	45	0	0	T	2637510	A	T	2637510	3	4	49	1	0	0	0	0	1	0	0	0	10568	101	4	5	1288	5	NOP56	20	2637510	Missense_Mutation	SNP	A	TCGA-OR-A5LB-01A-11D-A29I-10		2637510	60388010	322	10026										
VSX1	30813	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr20	25052585	25052585	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	aggtcatcaggcaccaccacGgggtctggggagcctgtgtg	16	11	3	0	rs149938697	by1000genomes;alternate_allele	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	VSX1-90	NM_001256272	exon5	c.C878A	p.P293Q	CACCACGGGGTCT	.	166	86	79	0	G|0.998;A|0.002	0	0	0	0	0	T	25052585	G	T	25052585	3	4	49	1	0	0	0	0	1	0	0	0	17269	1131	39	2		2	VSX1	20	25052585	Missense_Mutation	SNP	G	TCGA-OR-A5LB-01A-11D-A29I-10	22415075	25052585	37972935	323	10027										
ID1	3397	hgsc.bcm.edu	37	chr20	30193226	30193226	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	ggcagcaccgccaccgccgcCgcgggccccagctgcgcgct	14	21	0	0	rs11545368	byfrequency	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	ID1-651	NM_002165	exon1	c.C36G	p.A12A	CGCCGCCGCGGGC	.	8	5	1	0	C|0.993;G|0.007	1	0	1	0	0	G	30193226	C	G	30193226	2	3	49	1	0	0	0	0	0	0	0	1	7510	639	23	2		2	ID1	20	30193226	Silent	SNP	C	TCGA-OR-A5LB-01A-11D-A29I-10	5140641	30193226	32832294	324	10028										
KIF3B	9371	hgsc.bcm.edu;broad.mit.edu	37	chr20	30914608	30914609	+	Frame_Shift_Ins	INS	-	-	A													0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	aaactttatccctctggaagINSaaaaaagtaaaattatgaat					novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	KIF3B-517	NM_004798	exon6	c.1783_1784insA	p.E595fs	CTGGAAGAAAAAA	.	49	14	22	0	.	0	0	0	0	0	A	30914609	-	A	30914608	7	5	49	1	0	1	1	0	0	0	0	0	8322	943	33	0	1801	0	KIF3B	20	30914608	Frame_Shift_Ins	INS	-	TCGA-OR-A5LB-01A-11D-A29I-10	721382	30914608	32110912	325	10029										
E2F1	1869	broad.mit.edu;bcgsc.ca	37	chr20	32266084	32266084	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	aggtggtccagctgctgctcGctctcctgcagctgtcggag	14	13	1	0	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	E2F1-838	NM_005225	exon4	c.C648T	p.S216S	CTGCTCGCTCTCC	.	369	10	168	0	.	22	22	0	0	0	A	32266084	G	A	32266084	2	1	49	1	0	0	0	0	0	0	0	1	4877	1078	38	1		1	E2F1	20	32266084	Silent	SNP	G	TCGA-OR-A5LB-01A-11D-A29I-10	1351476	32266084	30759436	326	10030										
GSS	2937	hgsc.bcm.edu	37	chr20	33519853	33519855	+	In_Frame_Del	DEL	CTT	CTT	-													0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	ctgcttagctcctgctgcacCttcttagtcccagccagctg					novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	CTT	CTT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	GSS-93	NM_000178	exon10	c.916_918del	p.306_306del	CTGCACCTTCTTA	.	550	257	247	4	.	0	0	0	0	0	-	33519855	CTT	-	33519853	7	5	49	1	0	1	0	1	0	0	0	0	6850	680	24	0	522	0	GSS	20	33519853	In_Frame_Del	DEL	CTT	TCGA-OR-A5LB-01A-11D-A29I-10	1253769	33519853	29505667	327	10031										
TOP1	7150	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr20	39713140	39713141	+	Frame_Shift_Ins	INS	-	-	A													0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	ccaagaataaagataaagatINSaaaaaagttcctgagccaga					novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	TOP1-1148	NM_003286	exon8	c.546_547insA	p.D182fs	TAAAGATAAAAAA	.	76	24	68	0	.	0	0	0	0	0	A	39713141	-	A	39713140	7	5	49	1	0	1	1	0	0	0	0	0	16401	1403	49	0	576	0	TOP1	20	39713140	Frame_Shift_Ins	INS	-	TCGA-OR-A5LB-01A-11D-A29I-10	6193287	39713140	23312380	328	10032										
ZNF831	128611	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr20	57769225	57769225	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	caccaggggctcccagggagGctacctcctccccgcccact	10	20	0	0	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	ZNF831-126	NM_178457	exon1	c.G3151A	p.A1051T	AGGGAGGCTACCT	.	139	67	73	1	.	0	0	0	0	0	A	57769225	G	A	57769225	3	1	49	1	0	0	0	0	1	0	0	0	18222	1203	42	3	3153	3	ZNF831	20	57769225	Missense_Mutation	SNP	G	TCGA-OR-A5LB-01A-11D-A29I-10	18056085	57769225	5256295	329	10033										
PHACTR3	116154	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr20	58342325	58342325	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	tgagctctcccaagccttagCtggggctgactccctggaca	11	14	1	2	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	PHACTR3-93	NM_080672	exon5	c.C626A	p.A209D	CCTTAGCTGGGGC	.	357	23	170	0	.	0	0	0	0	0	A	58342325	C	A	58342325	3	1	49	1	0	0	0	0	1	0	0	0	11840	797	28	3	644	3	PHACTR3	20	58342325	Missense_Mutation	SNP	C	TCGA-OR-A5LB-01A-11D-A29I-10	573100	58342325	4683195	330	10034										
CABLES2	81928	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr20	60966048	60966048	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	tagaactgctgggtgaggcgCctgtaatgaggtaacacttg	14	7	0	3	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	CABLES2-91	NM_031215	exon10	c.G1416T	p.R472S	GAGGCGCCTGTAA	.	239	125	112	1	.	1	0	1	0	0	A	60966048	C	A	60966048	3	1	49	1	0	0	0	0	1	0	0	0	2536	738	26	3	24	3	CABLES2	20	60966048	Missense_Mutation	SNP	C	TCGA-OR-A5LB-01A-11D-A29I-10	2623723	60966048	2059472	331	10035										
COL20A1	57642	broad.mit.edu	37	chr20	61938844	61938844	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	ccgctcccaccgccccagccGgcccccagttccgctgcctg	9	24	0	0	rs201827276		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	COL20A1-90	NM_020882	exon6	c.G499A	p.G167S	CCAGCCGGCCCCC	.	129	4	36	0	.	0	0	0	0	0	A	61938844	G	A	61938844	3	1	49	1	0	0	0	0	1	0	0	0	3685	1116	39	1	517	1	COL20A1	20	61938844	Missense_Mutation	SNP	G	TCGA-OR-A5LB-01A-11D-A29I-10	972796	61938844	1086676	332	10036										
COL20A1	57642	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr20	61944185	61944185	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	agctgtccatgacggagctgCcaggggatgcagtccagctg	15	11	0	1	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	COL20A1-90	NM_020882	exon16	c.C1975T	p.P659S	GAGCTGCCAGGGG	.	276	121	137	1	.	0	0	0	0	0	T	61944185	C	T	61944185	3	4	49	1	0	0	0	0	1	0	0	0	3685	739	26	3	2033	3	COL20A1	20	61944185	Missense_Mutation	SNP	C	TCGA-OR-A5LB-01A-11D-A29I-10	5341	61944185	1081335	333	10037										
BACH1	571	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr21	30701923	30701925	+	In_Frame_Del	DEL	GAA	GAA	-													0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	ggattgtatccatgatattcGaagaagaagtaaaaacagaa					novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	GAA	GAA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	BACH1-92	NM_206866	exon4	c.1685_1687del	p.562_563del	ATATTCGAAGAAG	.	232	107	100	0	.	0	0	0	0	0	-	30701925	GAA	-	30701923	7	5	49	1	0	1	0	1	0	0	0	0	1284	1058	37	0	1695	0	BACH1	21	30701923	In_Frame_Del	DEL	GAA	TCGA-OR-A5LB-01A-11D-A29I-10		30701923	17427972	334	10038										
TIAM1	7074	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr21	32638636	32638636	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	tgctgagctgccgcggactcGcccgcgtttccatcccccga	11	18	0	1	rs202148756		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	TIAM1-724	NM_003253	exon5	c.C653T	p.A218V	GGACTCGCCCGCG	.	145	72	70	0	G|0.999;A|0.001	0	0	0	0	0	A	32638636	G	A	32638636	3	1	49	1	0	0	0	0	1	0	0	0	15927	1087	38	1	4222	1	TIAM1	21	32638636	Missense_Mutation	SNP	G	TCGA-OR-A5LB-01A-11D-A29I-10	1936713	32638636	15491259	335	10039										
UMODL1	89766	broad.mit.edu	37	chr21	43531700	43531700	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	acttcctgtggcatgccaccCgttccacccgggaaacactt	8	16	0	0	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	UMODL1-93	NM_173568	exon11	c.C2368A	p.R790S	GCCACCCGTTCCA	.	225	5	134	0	.	0	0	0	0	0	A	43531700	C	A	43531700	3	1	49	1	0	0	0	0	1	0	0	0	17018	652	23	2	2410	2	UMODL1	21	43531700	Missense_Mutation	SNP	C	TCGA-OR-A5LB-01A-11D-A29I-10	10893064	43531700	4598195	336	10040										
CCT8L2	150160	ucsc.edu;bcgsc.ca	37	chr22	17072883	17072883	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	tccttgatagcccagcaggcGtgggccaccagcttggtcaa	12	13	1	1	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	CCT8L2-69	NM_014406	exon1	c.C558T	p.H186H	GCAGGCGTGGGCC	.	180	166	146	2	.	0	0	0	0	0	A	17072883	G	A	17072883	2	1	49	1	0	0	0	0	0	0	0	1	2967	1136	40	1		1	CCT8L2	22	17072883	Silent	SNP	G	TCGA-OR-A5LB-01A-11D-A29I-10		17072883	34231683	337	10041										
LZTR1	8216	broad.mit.edu	37	chr22	21343966	21344002	+	In_Frame_Del	DEL	GAGGAGGTGAGGGGCGTGGGGAGCCAGGGCGCAGGTA	GAGGAGGTGAGGGGCGTGGGGAGCCAGGGCGCAGGTA	-													0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	accgagagctcacctgctggGaggaggtgaggggcgtgggg					novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	LZTR1-280	NM_006767	exon7	c.646_651del	p.216_217del	TGCTGGGAGGAGG	.	62	14	61	0	.	0	0	0	0	0	-	21344002	GAGGAGGTGAGGGGCGTGGGGAGCCAGGGCGCAGGTA	-	21343966	7	5	49	1	0	1	0	1	0	0	0	0	9165	1175	41	0	672	0	LZTR1	22	21343966	In_Frame_Del	DEL	GAGGAGGTGAGGGGCGTGGGGAGCCAGGGCGCAGGTA	TCGA-OR-A5LB-01A-11D-A29I-10	4271083	21343966	29960600	338	10042										
RAB36	9609	bcgsc.ca	37	chr22	23503121	23503121	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	gccctggcattcgagcagtcGgtgctgcaggacctggagag	16	11	0	1	rs5759611	byfrequency	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	RAB36-228	NM_004914	exon10	c.G873A	p.S291S	GCAGTCGGTGCTG	.	301	8	245	1	G|0.776;A|0.224	5	5	0	0	0	A	23503121	G	A	23503121	2	1	49	1	0	0	0	0	0	0	0	1	12961	1103	39	1		1	RAB36	22	23503121	Silent	SNP	G	TCGA-OR-A5LB-01A-11D-A29I-10	2159155	23503121	27801445	339	10043										
MIF	4282	hgsc.bcm.edu	37	chr22	24237074	24237074	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	cggcggcgcgcagaaccgctCctacagcaagctgctgtgcg	14	15	0	1	rs182012324		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	MIF-514	NM_002415	exon2	c.C224T	p.S75F	ACCGCTCCTACAG	.	5	5	4	0	C|0.999;T|0.000	837	9	827	0	1	T	24237074	C	T	24237074	3	4	49	1	0	0	0	0	1	0	0	0	9611	855	30	3	230	3	MIF	22	24237074	Missense_Mutation	SNP	C	TCGA-OR-A5LB-01A-11D-A29I-10	733953	24237074	27067492	340	10044										
CHEK2	11200	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr22	29130427	29130427	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	atcctgaagggcccataatcGagcccagggggcaggggtag	16	10	0	1	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	CHEK2-1515	NM_145862	exon2	c.C283T	p.R95X	ATAATCGAGCCCA	.	49	47	61	0	.	0	0	0	0	0	A	29130427	G	A	29130427	4	1	49	1	0	0	0	0	0	1	0	0	3341	1066	37	1	1537	1	CHEK2	22	29130427	Nonsense_Mutation	SNP	G	TCGA-OR-A5LB-01A-11D-A29I-10	4893353	29130427	22174139	341	10045										
XBP1	7494	broad.mit.edu	37	chr22	29191569	29191569	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	cttccagcttggctgatgacGtccccactgacagagaaagg	11	12	0	4	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	XBP1-290	NM_005080	exon5	c.C751T	p.R251C	GATGACGTCCCCA	.	114	4	90	1	.	71	71	0	0	0	A	29191569	G	A	29191569	3	1	49	1	0	0	0	0	1	0	0	0	17460	1145	40	1	409	1	XBP1	22	29191569	Missense_Mutation	SNP	G	TCGA-OR-A5LB-01A-11D-A29I-10	61142	29191569	22112997	342	10046										
ZNRF3	84133	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr22	29445345	29445345	+	Frame_Shift_Del	DEL	C	C	-													0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	agcatggactcccacggcaaCcccgtcaccttgctgaccat					novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	ZNRF3-69	NM_001206998	exon8	c.1176delC	p.N392fs	CGGCAACCCCGTC	.	165	146	117	0	.	0	0	0	0	0	-	29445345	C	-	29445345	7	5	49	1	0	1	0	1	0	0	0	0	18250	506	18	0	902	0	ZNRF3	22	29445345	Frame_Shift_Del	DEL	C	TCGA-OR-A5LB-01A-11D-A29I-10	253776	29445345	21859221	343	10047										
CRELD2	79174	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr22	50319196	50319196	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	aagatgcctgtgtgccgccgGcagaggctggtgagtggcac	17	10	0	3	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	CRELD2-90	NM_001135101	exon10	c.G1147A	p.A383T	CCGCCGGCAGAGG	.	94	88	68	0	.	0	0	0	0	0	A	50319196	G	A	50319196	3	1	49	1	0	0	0	0	1	0	0	0	3873	1203	42	3	1185	3	CRELD2	22	50319196	Missense_Mutation	SNP	G	TCGA-OR-A5LB-01A-11D-A29I-10	20873851	50319196	985370	344	10048										
PLXNB2	23654	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr22	50722344	50722344	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	tgctctggcccccgcaccacGcacacctgtagtcggggtta	11	16	1	0	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	PLXNB2-211	NM_012401	exon14	c.C2339T	p.A780V	CACCACGCACACC	.	88	75	34	0	.	24	0	24	0	0	A	50722344	G	A	50722344	3	1	49	1	0	0	0	0	1	0	0	0	12153	1087	38	1	3273	1	PLXNB2	22	50722344	Missense_Mutation	SNP	G	TCGA-OR-A5LB-01A-11D-A29I-10	403148	50722344	582222	345	10049										
PLXNB2	23654	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr22	50722601	50722601	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	ttcttgccgtaagacttgacGtagaggtgcaggggcagcgt	15	8	1	3	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	PLXNB2-211	NM_012401	exon13	c.C2223T	p.Y741Y	CTTGACGTAGAGG	.	71	65	48	0	.	32	1	31	0	0	A	50722601	G	A	50722601	2	1	49	1	0	0	0	0	0	0	0	1	12153	1140	40	1		1	PLXNB2	22	50722601	Silent	SNP	G	TCGA-OR-A5LB-01A-11D-A29I-10	257	50722601	581965	346	10050										
SCO2	9997	bcgsc.ca	37	chr22	50962208	50962208	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	tggtcctcatccttggggccTgcattgtagtacacgcggta	12	11	1	0	rs12148	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	SCO2-226	NM_001169111	exon2	c.A633C	p.A211A	GGGGCCTGCATTG	.	225	7	230	2	T|0.349;G|0.651	93	93	0	0	0	G	50962208	T	G	50962208	2	3	49	1	0	0	0	0	0	0	0	1	13967	1567	55	5		5	SCO2	22	50962208	Silent	SNP	T	TCGA-OR-A5LB-01A-11D-A29I-10	239607	50962208	342358	347	10051										
YY2	404281	broad.mit.edu	37	chrX	21875129	21875129	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	ggagcagaagcaaatgcaggTcaaaacgctggagggtgagt	16	6	1	2	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	YY2-193	NM_206923	exon1	c.T527G	p.V176G	TGCAGGTCAAAAC	.	104	3	67	1	.	0	0	0	0	0	G	21875129	T	G	21875129	3	3	49	1	0	0	0	0	1	0	0	0	17547	1667	58	5	529	5	YY2	23	21875129	Missense_Mutation	SNP	T	TCGA-OR-A5LB-01A-11D-A29I-10		21875129	133395431	348	10052										
SMC1A	8243	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chrX	53438821	53438823	+	In_Frame_Del	DEL	CTT	CTT	-													0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	ggtagctgctctcttgctggCttcttctttcaaccggtggt					novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	CTT	CTT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	SMC1A-232	NM_006306	exon7	c.1142_1144del	p.381_382del	TGCTGGCTTCTTC	.	123	109	63	0	.	0	0	0	0	0	-	53438823	CTT	-	53438821	7	5	49	1	0	1	0	1	0	0	0	0	14816	797	28	0	2633	0	SMC1A	23	53438821	In_Frame_Del	DEL	CTT	TCGA-OR-A5LB-01A-11D-A29I-10	31563692	53438821	101831739	349	10053										
FGD1	2245	broad.mit.edu	37	chrX	54497148	54497148	+	Frame_Shift_Del	DEL	G	G	-													0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	gaggggggatgggctccagtGgggggggcatccggggcatc					novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	FGD1-231	NM_004463	exon3	c.527delC	p.P176fs	TCCAGTGGGGGGG	.	27	7	8	0	.	0	0	0	0	0	-	54497148	G	-	54497148	7	5	49	1	0	1	0	1	0	0	0	0	5851	1348	47	0	2422	0	FGD1	23	54497148	Frame_Shift_Del	DEL	G	TCGA-OR-A5LB-01A-11D-A29I-10	1058327	54497148	100773412	350	10054										
CDX4	1046	broad.mit.edu;bcgsc.ca	37	chrX	72667191	72667191	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	gggacaggcggcacagggggCggtgggagtccgatgccagc	21	10	0	0	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	CDX4-130	NM_005193	exon1	c.C102T	p.G34G	AGGGGGCGGTGGG	.	107	95	42	2	.	0	0	0	0	0	T	72667191	C	T	72667191	2	4	49	1	0	0	0	0	0	0	0	1	3190	755	27	1		1	CDX4	23	72667191	Silent	SNP	C	TCGA-OR-A5LB-01A-11D-A29I-10	18170043	72667191	82603369	351	10055										
RPA4	29935	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	96139817	96139817	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	atgcacacatgatgctggatAaagcccgtcgtgataccact	9	11	0	2	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	RPA4-227	NM_013347	exon1	c.A508G	p.K170E	CTGGATAAAGCCC	.	179	69	83	0	.	0	0	0	0	0	G	96139817	A	G	96139817	3	3	49	1	0	0	0	0	1	0	0	0	13574	363	13	4	510	4	RPA4	23	96139817	Missense_Mutation	SNP	A	TCGA-OR-A5LB-01A-11D-A29I-10	23472626	96139817	59130743	352	10056										
HNRNPH2	3188	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	100667308	100667308	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	ccctgatactgccaacgatgGcttcgtccggcttagaggac	11	13	0	2	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	HNRNPH2-130	NM_001032393	exon2	c.G332A	p.G111D	ACGATGGCTTCGT	.	357	328	184	0	.	94	6	88	0	0	A	100667308	G	A	100667308	3	1	49	1	0	0	0	0	1	0	0	0	7288	1203	42	3	334	3	HNRNPH2	23	100667308	Missense_Mutation	SNP	G	TCGA-OR-A5LB-01A-11D-A29I-10	4527491	100667308	54603252	353	10057										
RNF128	79589	hgsc.bcm.edu;broad.mit.edu	37	chrX	105937256	105937256	+	Frame_Shift_Del	DEL	T	T	-													0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	aaccaggagaataggtccagTtttttttggctccttgtaat					novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	RNF128-227	NM_024539	exon1	c.24delT	p.S8fs	GTCCAGTTTTTTT	.	142	13	86	0	.	0	0	0	0	0	-	105937256	T	-	105937256	7	5	49	1	0	1	0	1	0	0	0	0	13471	1722	60	0	26	0	RNF128	23	105937256	Frame_Shift_Del	DEL	T	TCGA-OR-A5LB-01A-11D-A29I-10	5269948	105937256	49333304	354	10058										
CAPN6	827	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	110497633	110497633	+	Splice_Site	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	gggggtcatcacagatgtccTatgaatacaataattggtta	10	6	2	2	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	CAPN6-195	NM_014289	exon4	c.166-2A>G	.	ATGTCCTATGAAT	.	142	80	62	0	.	0	0	0	0	0	C	110497633	T	C	110497633	5	2	49	1	0	0	0	0	0	0	1	0	2636	1536	53	4	1805	4	CAPN6	23	110497633	Splice_Site	SNP	T	TCGA-OR-A5LB-01A-11D-A29I-10	4560377	110497633	44772927	355	10059										
KIAA1210	57481	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	118215302	118215302	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	caagagctctttattgcgtgAtttctgccatgtggctccat	9	10	2	2	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	KIAA1210-67	NM_020721	exon14	c.T5120A	p.I1707N	TGCGTGATTTCTG	.	81	78	34	0	.	0	0	0	0	0	T	118215302	A	T	118215302	3	4	49	1	0	0	0	0	1	0	0	0	8235	333	12	5	13	5	KIAA1210	23	118215302	Missense_Mutation	SNP	A	TCGA-OR-A5LB-01A-11D-A29I-10	7717669	118215302	37055258	356	10060										
GPC4	2239	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	132437297	132437297	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	aggatcagtatgtctggtttGctggtgtcaacctggacctc	12	9	3	0	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	GPC4-226	NM_001448	exon8	c.C1365T	p.S455S	TGGTTTGCTGGTG	.	140	126	71	0	.	22	0	22	0	0	A	132437297	G	A	132437297	2	1	49	1	0	0	0	0	0	0	0	1	6620	1310	46	3		3	GPC4	23	132437297	Silent	SNP	G	TCGA-OR-A5LB-01A-11D-A29I-10	14221995	132437297	22833263	357	10061										
SPANXC	64663	broad.mit.edu;bcgsc.ca	37	chrX	140336572	140336572	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	gctcctcttcaccccgccggCactggattgtttgtccattg	9	15	2	0	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	SPANXC-62	NM_022661	exon1	c.G19T	p.A7S	CGCCGGCACTGGA	.	466	12	262	1	.	0	0	0	0	0	A	140336572	C	A	140336572	3	1	49	1	0	0	0	0	1	0	0	0	15024	710	25	3	282	3	SPANXC	23	140336572	Missense_Mutation	SNP	C	TCGA-OR-A5LB-01A-11D-A29I-10	7899275	140336572	14933988	358	10062										
MAGEC1	9947	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chrX	140994548	140994548	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	tgtgagctcctctttctcctAcactttattgagtcttttcc	5	12	3	2	rs58117541	bycluster;alternate_allele	TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	MAGEC1-133	NM_005462	exon4	c.A1358G	p.Y453C	TCTCCTACACTTT	.	87	82	39	0	A|0.500;C|0.500	0	0	0	0	0	G	140994548	A	G	140994548	3	3	49	1	0	0	0	0	1	0	0	0	9208	391	14	4	1364	4	MAGEC1	23	140994548	Missense_Mutation	SNP	A	TCGA-OR-A5LB-01A-11D-A29I-10	657976	140994548	14276012	359	10063										
PLXNB3	5365	hgsc.bcm.edu;bcgsc.ca	37	chrX	153042691	153042691	+	Frame_Shift_Del	DEL	G	G	-													0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	acgctggaggatggcgaggaGgggggggtgtgcctctggca					novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	PLXNB3-130	NM_001163257	exon31	c.5025delG	p.E1675fs	CGAGGAGGGGGGG	.	106	90	44	1	.	0	0	0	0	0	-	153042691	G	-	153042691	7	5	49	1	0	1	0	1	0	0	0	0	12154	991	35	0	5188	0	PLXNB3	23	153042691	Frame_Shift_Del	DEL	G	TCGA-OR-A5LB-01A-11D-A29I-10	12048143	153042691	2227869	360	10064										
HCFC1	3054	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	153225825	153225825	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	cgagcacgggggatgttgtcCtccagtgtatccatcaggat	13	10	1	0	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	HCFC1-132	NM_005334	exon7	c.G945T	p.E315D	GTTGTCCTCCAGT	.	169	154	78	0	.	8	0	8	0	0	A	153225825	C	A	153225825	3	1	49	1	0	0	0	0	1	0	0	0	7012	680	24	3	5242	3	HCFC1	23	153225825	Missense_Mutation	SNP	C	TCGA-OR-A5LB-01A-11D-A29I-10	183134	153225825	2044735	361	10065										
DKC1	1736	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	154004462	154004462	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0110497237569061	4	1	0.182000286163972	3.95850622406639	0.0471250740960285	0.523809523809524	1	0	accaattgctttcatctcagCggaagcgagagagtgagagt	12	8	2	2	novel		TCGA-OR-A5LB-01A-11D-A29I-10	TCGA-OR-A5LB-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	1859d4f0-1cb2-48c4-8c28-f41da397e24d	1486299d-8e03-4ae8-8a7f-90c4d57168c2	.	DKC1-227	NM_001363	exon14	c.C1339T	p.R447W	TCTCAGCGGAAGC	.	131	49	80	1	.	1	0	1	0	0	T	154004462	C	T	154004462	3	4	49	1	0	0	0	0	1	0	0	0	4553	782	27	1	1393	1	DKC1	23	154004462	Missense_Mutation	SNP	C	TCGA-OR-A5LB-01A-11D-A29I-10	778637	154004462	1266098	362	10066										
AGMAT	79814	hgsc.bcm.edu	37	chr1	15911349	15911349	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0571428571428571	8	0.929330005145667	1.1585279547063	2.97907188353048	0.719086316714254	1	1	0	gggggctggttccggggcgcGtcggaagcctggcggctctg	21	11	1	0	rs3737705	byfrequency	TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	AGMAT-91	NM_024758	exon1	c.C114T	p.D38D	GGGCGCGTCGGAA	.	5	5	0	0	G|0.647;A|0.353	1	0	1	0	0	A	15911349	G	A	15911349	2	1	50	1	0	0	0	0	0	0	0	1	385	1136	40	1		1	AGMAT	1	15911349	Silent	SNP	G	TCGA-OR-A5LC-01A-11D-A29I-10		15911349	233339272	1	10067										
TRIM63	84676	hgsc.bcm.edu	37	chr1	26386772	26386772	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0571428571428571	8	0.929330005145667	1.1585279547063	2.97907188353048	0.719086316714254	1	1	0	ctcaccttggtcactcgacgGgaatcctccagctgagtgat	10	13	2	2	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	TRIM63-226	NM_032588	exon4	c.C582A	p.S194S	TCGACGGGAATCC	.	45	4	62	0	.	0	0	0	0	0	T	26386772	G	T	26386772	2	4	50	1	0	0	0	0	0	0	0	1	16576	1219	43	3		3	TRIM63	1	26386772	Silent	SNP	G	TCGA-OR-A5LC-01A-11D-A29I-10	10475423	26386772	222863849	2	10068										
PTGER3	5733	broad.mit.edu	37	chr1	71512493	71512493	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0571428571428571	8	0.929330005145667	1.1585279547063	2.97907188353048	0.719086316714254	1	1	0	ttggcccggcagcgggacacCagggccttaatggtggccag	16	12	0	0	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	PTGER3-660	NM_001126044	exon1	c.G768A	p.L256L	GGACACCAGGGCC	.	114	4	139	0	.	0	0	0	0	0	T	71512493	C	T	71512493	2	4	50	1	0	0	0	0	0	0	0	1	12777	581	21	3		3	PTGER3	1	71512493	Silent	SNP	C	TCGA-OR-A5LC-01A-11D-A29I-10	45125721	71512493	177738128	3	10069										
HRNR	388697	broad.mit.edu;bcgsc.ca	37	chr1	152188140	152188140	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0571428571428571	8	0.929330005145667	1.1585279547063	2.97907188353048	0.719086316714254	1	1	0	agactctcggtgacctaagcCagaagagtgaccggagccag	13	11	1	5	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	HRNR-93	NM_001009931	exon3	c.G5965A	p.G1989S	CTAAGCCAGAAGA	.	3928	167	2748	0	.	0	0	0	0	0	T	152188140	C	T	152188140	3	4	50	1	0	0	0	0	1	0	0	0	7380	594	21	3	2591	3	HRNR	1	152188140	Missense_Mutation	SNP	C	TCGA-OR-A5LC-01A-11D-A29I-10	80675647	152188140	97062481	4	10070										
FLG	2312	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	152280081	152280081	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0571428571428571	8	0.929330005145667	1.1585279547063	2.97907188353048	0.719086316714254	1	1	0	ctggtcccggtccgtccatgGgcggactcagactgttcatg	13	13	2	1	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	FLG-106	NM_002016	exon3	c.C7281A	p.A2427A	TCCATGGGCGGAC	.	481	116	309	0	.	0	0	0	0	0	T	152280081	G	T	152280081	2	4	50	1	0	0	0	0	0	0	0	1	5941	1219	43	3		3	FLG	1	152280081	Silent	SNP	G	TCGA-OR-A5LC-01A-11D-A29I-10	91941	152280081	96970540	5	10071										
OBSCN	84033	hgsc.bcm.edu	37	chr1	228504669	228504670	+	Missense_Mutation	DNP	GC	GC	AT													0.0571428571428571	8	0.929330005145667	1.1585279547063	2.97907188353048	0.719086316714254	1	1	0	cgcgacgccgtggcctctgcGcggctcaccgtgctgggtgg					novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	GC	GC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	OBSCN-403	NM_001271223	exon62	c.C16417T	p.R5228W	TCTGCGCGGCTCA	.	17	0	0	0	C|0.643;T|0.357	0	0	0	0	0	AT	228504670	GC	AT	228504669	3	1	50	1	0	0	0	0	1	0	0	0	10841	1074	38	1	13743	1	OBSCN	1	228504669	Missense_Mutation	DNP	GC	TCGA-OR-A5LC-01A-11D-A29I-10	76224588	228504669	20745952	6	10072										
OBSCN	84033	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	228526051	228526051	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0571428571428571	8	0.929330005145667	1.1585279547063	2.97907188353048	0.719086316714254	1	1	0	ctggggaggctgtgtctgaaGacgaatacaaggcaaggctg	16	7	1	2	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	OBSCN-403	NM_001271223	exon79	c.G19933A	p.D6645N	TCTGAAGACGAAT	.	55	9	31	0	.	2	2	0	0	0	A	228526051	G	A	228526051	3	1	50	1	0	0	0	0	1	0	0	0	10841	942	33	3	17328	3	OBSCN	1	228526051	Missense_Mutation	SNP	G	TCGA-OR-A5LC-01A-11D-A29I-10	21382	228526051	20724570	7	10073										
PCNXL2	80003	bcgsc.ca	37	chr1	233225848	233225848	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0571428571428571	8	0.929330005145667	1.1585279547063	2.97907188353048	0.719086316714254	1	1	0	ttcactggcctgacatatgaTgtgatgaaaatgacactccc	8	10	1	5	rs12059884	byfrequency	TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	PCNXL2-91	NM_014801	exon23	c.A4035G	p.T1345T	ATATGATGTGATG	.	147	6	120	0	T|0.854;C|0.146	0	0	0	0	0	C	233225848	T	C	233225848	2	2	50	1	0	0	0	0	0	0	0	1	11621	1451	51	4		4	PCNXL2	1	233225848	Silent	SNP	T	TCGA-OR-A5LC-01A-11D-A29I-10	4699797	233225848	16024773	8	10074										
RYR2	6262	bcgsc.ca	37	chr1	237958589	237958589	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0571428571428571	8	0.929330005145667	1.1585279547063	2.97907188353048	0.719086316714254	1	1	0	tatgcttttgtatattttagGtcatttcccaacaactactg	5	8	1	0	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	RYR2-158	NM_001035	exon96	c.G13914T	p.Q4638H	TTTTAGGTCATTT	.	127	6	142	0	.	0	0	0	0	0	T	237958589	G	T	237958589	3	4	50	1	0	0	0	0	1	0	0	0	13804	1275	44	3	14296	3	RYR2	1	237958589	Missense_Mutation	SNP	G	TCGA-OR-A5LC-01A-11D-A29I-10	4732741	237958589	11292032	9	10075										
CMPK2	129607	hgsc.bcm.edu	37	chr2	7005369	7005369	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0571428571428571	8	0.929330005145667	1.1585279547063	2.97907188353048	0.719086316714254	1	1	0	tgcgggcgtggtgcctcctgAcaggcgcccagcagctcgag	16	14	0	1	rs11678810		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	CMPK2-68	NM_001256478	exon1	c.T459C	p.C153C	CTCCTGACAGGCG	.	10	10	0	0	A|0.003;G|0.997	1	0	1	0	0	G	7005369	A	G	7005369	2	3	50	1	0	0	0	0	0	0	0	1	3587	273	10	4		4	CMPK2	2	7005369	Silent	SNP	A	TCGA-OR-A5LC-01A-11D-A29I-10		7005369	236194004	10	10076										
ASPRV1	151516	broad.mit.edu	37	chr2	70188562	70188562	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0571428571428571	8	0.929330005145667	1.1585279547063	2.97907188353048	0.719086316714254	1	1	0	ctcactcctggctccgctccCggccatcctgctgctctcct	7	21	2	0	rs148290351	byfrequency	TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	ASPRV1-69	NM_152792	exon1	c.G259A	p.G87R	CGCTCCCGGCCAT	.	200	5	125	0	C|0.999;T|0.001	1	1	0	0	0	T	70188562	C	T	70188562	3	4	50	1	0	0	0	0	1	0	0	0	1059	652	23	1	776	1	ASPRV1	2	70188562	Missense_Mutation	SNP	C	TCGA-OR-A5LC-01A-11D-A29I-10	63183193	70188562	173010811	11	10077										
DNAH6	1768	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	84771405	84771405	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0571428571428571	8	0.929330005145667	1.1585279547063	2.97907188353048	0.719086316714254	1	1	0	aatgactactatactattagCcaaagggcagtaacacacat	6	9	0	1	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	DNAH6-69	NM_001370	exon5	c.C711T	p.S237S	TATTAGCCAAAGG	.	146	58	116	0	.	0	0	0	0	0	T	84771405	C	T	84771405	2	4	50	1	0	0	0	0	0	0	0	1	4616	738	26	3		3	DNAH6	2	84771405	Silent	SNP	C	TCGA-OR-A5LC-01A-11D-A29I-10	14582843	84771405	158427968	12	10078										
XIRP2	129446	broad.mit.edu	37	chr2	168108439	168108439	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0571428571428571	8	0.929330005145667	1.1585279547063	2.97907188353048	0.719086316714254	1	1	0	tgagaaccaccttccaagagGaatctgcatttataagtggt	9	8	1	2	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	XIRP2-104	NM_152381	exon9	c.G10537A	p.E3513K	CAAGAGGAATCTG	.	26	3	16	0	.	0	0	0	0	0	A	168108439	G	A	168108439	3	1	50	1	0	0	0	0	1	0	0	0	17468	1175	41	3	10567	3	XIRP2	2	168108439	Missense_Mutation	SNP	G	TCGA-OR-A5LC-01A-11D-A29I-10	83337034	168108439	75090934	13	10079										
KCNE4	23704	broad.mit.edu;bcgsc.ca	37	chr2	223917881	223917881	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0571428571428571	8	0.929330005145667	1.1585279547063	2.97907188353048	0.719086316714254	1	1	0	ctgcaggagagcgtggcgccCgcgctgtcctgcaccctctg	14	16	1	1	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	KCNE4-91	NM_080671	exon2	c.C486T	p.P162P	GGCGCCCGCGCTG	.	110	36	47	2	.	3	3	0	0	0	T	223917881	C	T	223917881	2	4	50	1	0	0	0	0	0	0	0	1	8046	639	23	1		1	KCNE4	2	223917881	Silent	SNP	C	TCGA-OR-A5LC-01A-11D-A29I-10	55809442	223917881	19281492	14	10080										
WDFY1	57590	hgsc.bcm.edu	37	chr2	224809876	224809876	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0571428571428571	8	0.929330005145667	1.1585279547063	2.97907188353048	0.719086316714254	1	1	0	gggccctacctgtcctcgctGgccgtgatcacgccgtcctc	11	18	1	1	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	WDFY1-226	NM_020830	exon1	c.C126A	p.A42A	CTCGCTGGCCGTG	.	71	40	3	0	.	0	0	0	0	0	T	224809876	G	T	224809876	2	4	50	1	0	0	0	0	0	0	0	1	17306	1335	47	3		3	WDFY1	2	224809876	Silent	SNP	G	TCGA-OR-A5LC-01A-11D-A29I-10	891995	224809876	18389497	15	10081										
CNTN4	152330	broad.mit.edu;bcgsc.ca	37	chr3	3030028	3030028	+	Splice_Site	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0571428571428571	8	0.929330005145667	1.1585279547063	2.97907188353048	0.719086316714254	1	1	0	gttcatttactttgatttcaGaattaccatttctgaagatg	6	6	3	4	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	CNTN4-344	NM_175607	exon14	c.1359-1G>A	.	ATTTCAGAATTAC	.	60	5	49	1	.	0	0	0	0	0	A	3030028	G	A	3030028	5	1	50	1	0	0	0	0	0	0	1	0	3649	956	33	3	1400	3	CNTN4	3	3030028	Splice_Site	SNP	G	TCGA-OR-A5LC-01A-11D-A29I-10		3030028	194992402	16	10082										
LRRC3B	116135	bcgsc.ca	37	chr3	26751493	26751493	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0571428571428571	8	0.929330005145667	1.1585279547063	2.97907188353048	0.719086316714254	1	1	0	gatgagcatgccttcaaaggAgtagctgaaaccttgcagac	11	9	1	3	rs35497952	byfrequency	TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	LRRC3B-94	NM_052953	exon2	c.A330T	p.G110G	CAAAGGAGTAGCT	.	117	6	89	0	A|0.899;T|0.101	0	0	0	0	0	T	26751493	A	T	26751493	2	4	50	1	0	0	0	0	0	0	0	1	9023	291	11	5		5	LRRC3B	3	26751493	Silent	SNP	A	TCGA-OR-A5LC-01A-11D-A29I-10	23721465	26751493	171270937	17	10083										
FAM3D	131177	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	58631299	58631299	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0571428571428571	8	0.929330005145667	1.1585279547063	2.97907188353048	0.719086316714254	1	1	0	ccccactgcagattttaaacGcaaagtagttggctgggcag	11	10	0	1	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	FAM3D-90	NM_138805	exon5	c.C200T	p.A67V	TTAAACGCAAAGT	.	102	59	129	2	.	0	0	0	0	0	A	58631299	G	A	58631299	3	1	50	1	0	0	0	0	1	0	0	0	5578	1087	38	1	498	1	FAM3D	3	58631299	Missense_Mutation	SNP	G	TCGA-OR-A5LC-01A-11D-A29I-10	31879806	58631299	139391131	18	10084										
ADAMTS9	56999	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	64536626	64536626	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0571428571428571	8	0.929330005145667	1.1585279547063	2.97907188353048	0.719086316714254	1	1	0	gttgcaaactacagctttcaCggtccaccggccgcttgctc	9	15	1	0	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	ADAMTS9-230	NM_182920	exon31	c.G4811A	p.R1604H	CTTTCACGGTCCA	.	178	101	191	0	.	0	0	0	0	0	T	64536626	C	T	64536626	3	4	50	1	0	0	0	0	1	0	0	0	273	536	19	1	1032	1	ADAMTS9	3	64536626	Missense_Mutation	SNP	C	TCGA-OR-A5LC-01A-11D-A29I-10	5905327	64536626	133485804	19	10085										
TSC22D2	9819	hgsc.bcm.edu	37	chr3	150128392	150128392	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0571428571428571	8	0.929330005145667	1.1585279547063	2.97907188353048	0.719086316714254	1	1	0	ccgtgggcaccggccagaatGcttcctcggtgggcgcgcag	16	14	0	1	rs879634	byfrequency	TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	TSC22D2-91	NM_014779	exon1	c.G1255A	p.A419T	CAGAATGCTTCCT	.	12	8	0	0	G|0.797;A|0.203	0	0	0	0	0	A	150128392	G	A	150128392	3	1	50	1	0	0	0	0	1	0	0	0	16646	1319	46	3	1257	3	TSC22D2	3	150128392	Missense_Mutation	SNP	G	TCGA-OR-A5LC-01A-11D-A29I-10	85591766	150128392	47894038	20	10086										
MUC4	4585	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr3	195508392	195508392	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0571428571428571	8	0.929330005145667	1.1585279547063	2.97907188353048	0.719086316714254	1	1	0	ggggtggcgtgacctgtggaTactgaggaagtgtcggtgac	19	6	0	3	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	MUC4-90	NM_018406	exon2	c.A10059T	p.V3353V	TGTGGATACTGAG	.	691	112	624	1	.	0	0	0	0	0	A	195508392	T	A	195508392	2	1	50	1	0	0	0	0	0	0	0	1	10006	1393	49	5		5	MUC4	3	195508392	Silent	SNP	T	TCGA-OR-A5LC-01A-11D-A29I-10	45380000	195508392	2514038	21	10087										
TNK2	10188	hgsc.bcm.edu	37	chr3	195594805	195594805	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0571428571428571	8	0.929330005145667	1.1585279547063	2.97907188353048	0.719086316714254	1	1	0	ggaggcacccggggaggggaAgcaggtccaggccactggct	19	11	0	0	rs1056749	byfrequency	TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	TNK2-957	NM_001010938	exon13	c.T2553C	p.A851A	AGGGGAAGCAGGT	.	18	7	0	0	A|0.886;G|0.114	5	3	2	0	0	G	195594805	A	G	195594805	2	3	50	1	0	0	0	0	0	0	0	1	16355	59	3	4		4	TNK2	3	195594805	Silent	SNP	A	TCGA-OR-A5LC-01A-11D-A29I-10	86413	195594805	2427625	22	10088										
CRIPAK	285464	hgsc.bcm.edu	37	chr4	1388755	1388755	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0571428571428571	8	0.929330005145667	1.1585279547063	2.97907188353048	0.719086316714254	1	1	0	cccgcctgctcacacgtgccCatgcggagtgcccgcctgct	11	19	1	0	rs141481663	byfrequency	TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	CRIPAK-90	NM_175918	exon1	c.C456G	p.P152P	CGTGCCCATGCGG	.	46	12	2	0	C|0.960;G|0.040	12	6	6	0	0	G	1388755	C	G	1388755	2	3	50	1	0	0	0	0	0	0	0	1	3883	581	21	3		3	CRIPAK	4	1388755	Silent	SNP	C	TCGA-OR-A5LC-01A-11D-A29I-10		1388755	189765521	23	10089										
WHSC1	7468	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	1905977	1905977	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0571428571428571	8	0.929330005145667	1.1585279547063	2.97907188353048	0.719086316714254	1	1	0	agagtcttgtccaaacactgGaagagacaaagaccacctgt	9	10	1	3	rs192103195		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	WHSC1-664	NM_133335	exon3	c.G632A	p.G211E	ACACTGGAAGAGA	.	177	68	179	1	G|0.999;A|0.000	1	0	1	0	0	A	1905977	G	A	1905977	3	1	50	1	0	0	0	0	1	0	0	0	17400	1174	41	3	638	3	WHSC1	4	1905977	Missense_Mutation	SNP	G	TCGA-OR-A5LC-01A-11D-A29I-10	517222	1905977	189248299	24	10090										
WFS1	7466	ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	6302448	6302448	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0571428571428571	8	0.929330005145667	1.1585279547063	2.97907188353048	0.719086316714254	1	1	0	cctgattgacatggcctccaGggcaggcatgcactggctgt	13	12	0	2	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	WFS1-91	NM_001145853	exon8	c.G926T	p.R309M	CCTCCAGGGCAGG	.	279	157	248	3	.	3	1	2	0	0	T	6302448	G	T	6302448	3	4	50	1	0	0	0	0	1	0	0	0	17398	1000	35	3	952	3	WFS1	4	6302448	Missense_Mutation	SNP	G	TCGA-OR-A5LC-01A-11D-A29I-10	4396471	6302448	184851828	25	10091										
WFS1	7466	bcgsc.ca	37	chr4	6303354	6303354	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0571428571428571	8	0.929330005145667	1.1585279547063	2.97907188353048	0.719086316714254	1	1	0	tagtgtgcccctgctgttgcGctggtggaccaaggccagct	14	12	0	0	rs734312	byfrequency	TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	WFS1-91	NM_001145853	exon8	c.G1832A	p.R611H	TGTTGCGCTGGTG	.	196	7	150	0	G|0.550;A|0.450	4	4	0	0	0	A	6303354	G	A	6303354	3	1	50	1	0	0	0	0	1	0	0	0	17398	1087	38	1	1858	1	WFS1	4	6303354	Missense_Mutation	SNP	G	TCGA-OR-A5LC-01A-11D-A29I-10	906	6303354	184850922	26	10092										
GABRB1	2560	bcgsc.ca	37	chr4	47322219	47322219	+	Silent	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0571428571428571	8	0.929330005145667	1.1585279547063	2.97907188353048	0.719086316714254	1	1	0	cagaactgcaccctggagatCgaaagttgtgagttacttgg	12	8	0	3	rs6284	bycluster;byfrequency;bysubmitter;by1000genomes	TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	GABRB1-92	NM_000812	exon5	c.C537A	p.I179I	GGAGATCGAAAGT	.	100	5	106	1	C|0.849;A|0.151	0	0	0	0	0	A	47322219	C	A	47322219	2	1	50	1	0	0	0	0	0	0	0	1	6185	874	31	2		2	GABRB1	4	47322219	Silent	SNP	C	TCGA-OR-A5LC-01A-11D-A29I-10	41018865	47322219	143832057	27	10093										
DSPP	1834	bcgsc.ca	37	chr4	88537267	88537267	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0571428571428571	8	0.929330005145667	1.1585279547063	2.97907188353048	0.719086316714254	1	1	0	agtgacagcagtgaaagcagCgacagcagtgacagcagcga	14	9	0	3	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	DSPP-90	NM_014208	exon5	c.C3453T	p.S1151S	AAGCAGCGACAGC	.	589	27	531	7	.	0	0	0	0	0	T	88537267	C	T	88537267	2	4	50	1	0	0	0	0	0	0	0	1	4793	767	27	1		1	DSPP	4	88537267	Silent	SNP	C	TCGA-OR-A5LC-01A-11D-A29I-10	41215048	88537267	102617009	28	10094										
TRPC3	7222	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	122853648	122853648	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0571428571428571	8	0.929330005145667	1.1585279547063	2.97907188353048	0.719086316714254	1	1	0	ggccgctcgatcctggcaccCttcatcagcagcatgtgcac	10	16	2	0	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	TRPC3-92	NM_001130698	exon2	c.G765T	p.K255N	GGCACCCTTCATC	.	262	87	218	0	.	0	0	0	0	0	A	122853648	C	A	122853648	3	1	50	1	0	0	0	0	1	0	0	0	16617	680	24	3	2044	3	TRPC3	4	122853648	Missense_Mutation	SNP	C	TCGA-OR-A5LC-01A-11D-A29I-10	34316381	122853648	68300628	29	10095										
INTU	27152	bcgsc.ca	37	chr4	128584580	128584580	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0571428571428571	8	0.929330005145667	1.1585279547063	2.97907188353048	0.719086316714254	1	1	0	tatgatgtgaaaagggagacGtcccatccaagacagaaaaa	10	7	0	5	rs4833380	byfrequency	TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	INTU-91	NM_015693	exon4	c.G813A	p.T271T	GGAGACGTCCCAT	.	184	8	181	0	G|0.390;A|0.610	0	0	0	0	0	A	128584580	G	A	128584580	2	1	50	1	0	0	0	0	0	0	0	1	7807	1132	40	1		1	INTU	4	128584580	Silent	SNP	G	TCGA-OR-A5LC-01A-11D-A29I-10	5730932	128584580	62569696	30	10096										
PCDH18	54510	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	138452025	138452025	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0571428571428571	8	0.929330005145667	1.1585279547063	2.97907188353048	0.719086316714254	1	1	0	ttttcatatgtcttctgaagTttaaagtgaccatgtccatg	7	7	3	2	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	PCDH18-185	NM_019035	exon1	c.A1218G	p.K406K	CTGAAGTTTAAAG	.	62	15	71	0	.	0	0	0	0	0	C	138452025	T	C	138452025	2	2	50	1	0	0	0	0	0	0	0	1	11542	1722	60	4		4	PCDH18	4	138452025	Silent	SNP	T	TCGA-OR-A5LC-01A-11D-A29I-10	9867445	138452025	52702251	31	10097										
TRIM2	23321	bcgsc.ca	37	chr4	154216710	154216710	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0571428571428571	8	0.929330005145667	1.1585279547063	2.97907188353048	0.719086316714254	1	1	0	tccatccacaacctcgggacGatcttaaccaccaacgccgt	6	17	1	0	rs893805	byfrequency	TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	TRIM2-650	NM_015271	exon6	c.G1032A	p.T344T	CGGGACGATCTTA	.	195	7	191	0	G|0.511;A|0.489	0	0	0	0	0	A	154216710	G	A	154216710	2	1	50	1	0	0	0	0	0	0	0	1	16532	1045	37	1		1	TRIM2	4	154216710	Silent	SNP	G	TCGA-OR-A5LC-01A-11D-A29I-10	15764685	154216710	36937566	32	10098										
DCHS2	54798	bcgsc.ca	37	chr4	155241572	155241572	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0571428571428571	8	0.929330005145667	1.1585279547063	2.97907188353048	0.719086316714254	1	1	0	acgtcatgttttcatttcctGagaggatgctgtatgttact	9	7	2	1	rs11935573	byfrequency	TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	DCHS2-94	NM_017639	exon14	c.C3614T	p.S1205L	TTTCCTGAGAGGA	.	159	6	146	0	G|0.746;A|0.254	0	0	0	0	0	A	155241572	G	A	155241572	3	1	50	1	0	0	0	0	1	0	0	0	4294	1294	45	3	5184	3	DCHS2	4	155241572	Missense_Mutation	SNP	G	TCGA-OR-A5LC-01A-11D-A29I-10	1024862	155241572	35912704	33	10099										
IRX4	50805	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	1879909	1879909	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0571428571428571	8	0.929330005145667	1.1585279547063	2.97907188353048	0.719086316714254	1	1	0	gctggtggtctcgcgcgtggCgttcttgcgccgcgtgccgc	17	14	2	0	rs200961337	alternate_allele	TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	IRX4-226	NM_016358	exon4	c.G445T	p.A149S	GCGTGGCGTTCTT	.	106	82	62	0	.	0	0	0	0	0	A	1879909	C	A	1879909	3	1	50	1	0	0	0	0	1	0	0	0	7867	768	27	2	1122	2	IRX4	5	1879909	Missense_Mutation	SNP	C	TCGA-OR-A5LC-01A-11D-A29I-10		1879909	179035351	34	10100										
MYO10	4651	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	16671084	16671084	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0571428571428571	8	0.929330005145667	1.1585279547063	2.97907188353048	0.719086316714254	1	1	0	gccatggataaccgcttcgtGggcctgaaaggagacagtca	13	10	1	2	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	MYO10-3	NM_012334	exon39	c.C5434A	p.H1812N	CTTCGTGGGCCTG	.	86	13	98	0	.	0	0	0	0	0	T	16671084	G	T	16671084	3	4	50	1	0	0	0	0	1	0	0	0	10090	1348	47	3	754	3	MYO10	5	16671084	Missense_Mutation	SNP	G	TCGA-OR-A5LC-01A-11D-A29I-10	14791175	16671084	164244176	35	10101										
C9	735	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	39308392	39308392	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0571428571428571	8	0.929330005145667	1.1585279547063	2.97907188353048	0.719086316714254	1	1	0	aaattcagctccaacagagaTttcagagaaagccagagata	8	8	2	3	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	C9-90	NM_001737	exon8	c.A1180T	p.I394F	CAGAGATTTCAGA	.	161	73	144	2	.	0	0	0	0	0	A	39308392	T	A	39308392	3	1	50	1	0	0	0	0	1	0	0	0	2449	1493	52	5	515	5	C9	5	39308392	Missense_Mutation	SNP	T	TCGA-OR-A5LC-01A-11D-A29I-10	22637308	39308392	141606868	36	10102										
MSH3	4437	hgsc.bcm.edu	37	chr5	79950715	79950715	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0571428571428571	8	0.929330005145667	1.1585279547063	2.97907188353048	0.719086316714254	1	1	0	gcgctgcagcggctgcagcgGccgcagcggccgcagcgccc	17	18	0	0	rs144776112		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	MSH3-661	NM_002439	exon1	c.G169C	p.A57P	GCAGCGGCCGCAG	.	26	14	3	0	G|0.834;C|0.166	0	0	0	0	0	C	79950715	G	C	79950715	3	2	50	1	0	0	0	0	1	0	0	0	9899	1203	42	3	171	3	MSH3	5	79950715	Missense_Mutation	SNP	G	TCGA-OR-A5LC-01A-11D-A29I-10	40642323	79950715	100964545	37	10103										
ARL10	285598	hgsc.bcm.edu	37	chr5	175792605	175792605	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0571428571428571	8	0.929330005145667	1.1585279547063	2.97907188353048	0.719086316714254	1	1	0	ggccccttggtgctggcgctGggcggcgccgcggcggtgct	20	14	0	0	rs2303667		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	ARL10-91	NM_173664	exon1	c.G39C	p.L13L	GGCGCTGGGCGGC	.	5	5	0	0	G|0.585;C|0.415	0	0	0	0	0	C	175792605	G	C	175792605	2	2	50	1	0	0	0	0	0	0	0	1	926	1335	47	3		3	ARL10	5	175792605	Silent	SNP	G	TCGA-OR-A5LC-01A-11D-A29I-10	95841890	175792605	5122655	38	10104										
ATXN1	6310	broad.mit.edu	37	chr6	16327915	16327916	+	In_Frame_Ins	INS	-	-	TGC													0.0571428571428571	8	0.929330005145667	1.1585279547063	2.97907188353048	0.719086316714254	1	1	0	gctgctgctgctgatgctgaINStgctgctgctgctgctgctg					rs71806515		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	ATXN1-93	NM_001128164	exon7	c.627_628insGCA	p.H209delinsQH	ATGCTGATGCTGC	.	27	15	9	0	.	0	0	0	0	0	TGC	16327916	-	TGC	16327915	7	5	50	1	0	1	1	0	0	0	0	0	1210	330	12	0	1828	0	ATXN1	6	16327915	In_Frame_Ins	INS	-	TCGA-OR-A5LC-01A-11D-A29I-10		16327915	154787152	39	10105										
HIST1H2BA	255626	bcgsc.ca	37	chr6	25727334	25727334	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0571428571428571	8	0.929330005145667	1.1585279547063	2.97907188353048	0.719086316714254	1	1	0	gctatgagcattatgaattcCttcgtcactgatatctttga	7	8	2	4	rs4712961	byfrequency	TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	HIST1H2BA-204	NM_170610	exon1	c.C198T	p.S66S	GAATTCCTTCGTC	.	93	5	121	0	C|0.679;T|0.321	0	0	0	0	0	T	25727334	C	T	25727334	2	4	50	1	0	0	0	0	0	0	0	1	7161	668	24	3		3	HIST1H2BA	6	25727334	Silent	SNP	C	TCGA-OR-A5LC-01A-11D-A29I-10	9399419	25727334	145387733	40	10106										
COL21A1	81578	bcgsc.ca	37	chr6	56044578	56044578	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0571428571428571	8	0.929330005145667	1.1585279547063	2.97907188353048	0.719086316714254	1	1	0	tccttgacgtcatcttgggaTttgccatccgtaagtaccac	8	12	2	1	rs2038149	byfrequency	TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	COL21A1-24	NM_030820	exon3	c.A438G	p.K146K	TTGGGATTTGCCA	.	198	8	213	3	T|0.330;C|0.670	0	0	0	0	0	C	56044578	T	C	56044578	2	2	50	1	0	0	0	0	0	0	0	1	3686	1490	52	4		4	COL21A1	6	56044578	Silent	SNP	T	TCGA-OR-A5LC-01A-11D-A29I-10	30317244	56044578	115070489	41	10107										
ITGB8	3696	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	20418693	20418693	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0571428571428571	8	0.929330005145667	1.1585279547063	2.97907188353048	0.719086316714254	1	1	0	ggagccgaagctaattttatGctgaaagttcatcctctgaa	9	8	2	2	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	ITGB8-227	NM_002214	exon4	c.G408A	p.M136I	TTTTATGCTGAAA	.	28	9	19	0	.	0	0	0	0	0	A	20418693	G	A	20418693	3	1	50	1	0	0	0	0	1	0	0	0	7922	1319	46	3	422	3	ITGB8	7	20418693	Missense_Mutation	SNP	G	TCGA-OR-A5LC-01A-11D-A29I-10		20418693	138719970	42	10108										
GARS	2617	hgsc.bcm.edu	37	chr7	30634630	30634630	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0571428571428571	8	0.929330005145667	1.1585279547063	2.97907188353048	0.719086316714254	1	1	0	ttagcccgaccctcgctcctGctccgccggtccctcagcgc	9	21	1	0	rs2529438	byfrequency	TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	GARS-91	NM_002047	exon1	c.G93C	p.L31L	GCTCCTGCTCCGC	.	13	9	0	0	G|0.889;C|0.111	3	1	2	0	0	C	30634630	G	C	30634630	2	2	50	1	0	0	0	0	0	0	0	1	6262	1306	46	3		3	GARS	7	30634630	Silent	SNP	G	TCGA-OR-A5LC-01A-11D-A29I-10	10215937	30634630	128504033	43	10109										
EPDR1	54749	hgsc.bcm.edu	37	chr7	37960577	37960577	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0571428571428571	8	0.929330005145667	1.1585279547063	2.97907188353048	0.719086316714254	1	1	0	cccctccgcaccgtcccgggCgccctgggtgcctggctgct	13	20	0	0	rs147877097		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	EPDR1-91	NM_001242946	exon1	c.C36A	p.G12G	CCCGGGCGCCCTG	.	12	7	0	0	C|0.995;A|0.005	1	1	0	0	0	A	37960577	C	A	37960577	2	1	50	1	0	0	0	0	0	0	0	1	5176	755	27	2		2	EPDR1	7	37960577	Silent	SNP	C	TCGA-OR-A5LC-01A-11D-A29I-10	7325947	37960577	121178086	44	10110										
GLI3	2737	hgsc.bcm.edu	37	chr7	42005050	42005050	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0571428571428571	8	0.929330005145667	1.1585279547063	2.97907188353048	0.719086316714254	1	1	0	tgatagcccccagcaggcccGctcctcaaggggttctgcgg	13	15	2	1	rs147343252		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	GLI3-1149	NM_000168	exon15	c.C3621A	p.S1207R	AGGCCCGCTCCTC	.	61	4	11	0	G|1.000;T|0.000	3	3	0	0	0	T	42005050	G	T	42005050	3	4	50	1	0	0	0	0	1	0	0	0	6459	1078	38	2	1125	2	GLI3	7	42005050	Missense_Mutation	SNP	G	TCGA-OR-A5LC-01A-11D-A29I-10	4044473	42005050	117133613	45	10111										
MYO1G	64005	hgsc.bcm.edu;mdanderson.org	37	chr7	45002430	45002430	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0571428571428571	8	0.929330005145667	1.1585279547063	2.97907188353048	0.719086316714254	1	1	0	gggctccacggagatgaggcGccggaccccgcgatggctta	16	13	0	2	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	MYO1G-137	NM_033054	exon22	c.C2965T	p.R989C	TGAGGCGCCGGAC	.	105	64	12	0	.	0	0	0	0	0	A	45002430	G	A	45002430	3	1	50	1	0	0	0	0	1	0	0	0	10102	1087	38	1	95	1	MYO1G	7	45002430	Missense_Mutation	SNP	G	TCGA-OR-A5LC-01A-11D-A29I-10	2997380	45002430	114136233	46	10112										
SND1	27044	hgsc.bcm.edu	37	chr7	127292433	127292434	+	In_Frame_Ins	INS	-	-	TCCTCCGCGCAGAGCGGCGGC													0.0571428571428571	8	0.929330005145667	1.1585279547063	2.97907188353048	0.719086316714254	1	1	0	ttgcatctccacacatggcgINStcctccgcgcagagcggcgg					novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	SND1-92	NM_014390	exon1	c.6_7insTCCTCCGCGCAGAGCGGCGGC	p.A2delinsASSAQSGG	CATGGCGTCCTCC	.	246	0	59	0	.	0	0	0	0	0	TCCTCCGCGCAGAGCGGCGGC	127292434	-	TCCTCCGCGCAGAGCGGCGGC	127292433	7	5	50	1	0	1	1	0	0	0	0	0	14879	1132	40	0	8	0	SND1	7	127292433	In_Frame_Ins	INS	-	TCGA-OR-A5LC-01A-11D-A29I-10	82290003	127292433	31846230	47	10113										
ZNF775	285971	broad.mit.edu	37	chr7	150093920	150093920	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0571428571428571	8	0.929330005145667	1.1585279547063	2.97907188353048	0.719086316714254	1	1	0	gactgcgggaagaggttcagCtggtggtcgtccctgaagat	16	8	1	3	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	ZNF775-90	NM_173680	exon3	c.C351A	p.S117R	GTTCAGCTGGTGG	.	36	3	14	0	.	2	2	0	0	0	A	150093920	C	A	150093920	3	1	50	1	0	0	0	0	1	0	0	0	18185	796	28	3	357	3	ZNF775	7	150093920	Missense_Mutation	SNP	C	TCGA-OR-A5LC-01A-11D-A29I-10	22801487	150093920	9044743	48	10114										
ASB10	136371	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	150873649	150873649	+	Splice_Site	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0571428571428571	8	0.929330005145667	1.1585279547063	2.97907188353048	0.719086316714254	1	1	0	ttcagggccttggaatctgaCctgcagagtttcaggagtca	12	9	4	2	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	ASB10-226	NM_080871	exon5	c.1173+1G>T	.	ATCTGACCTGCAG	.	288	133	234	0	.	0	0	0	0	0	A	150873649	C	A	150873649	5	1	50	1	0	0	0	0	0	0	1	0	1015	521	18	3	192	3	ASB10	7	150873649	Splice_Site	SNP	C	TCGA-OR-A5LC-01A-11D-A29I-10	779729	150873649	8265014	49	10115										
UBE3C	9690	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	157041208	157041208	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0571428571428571	8	0.929330005145667	1.1585279547063	2.97907188353048	0.719086316714254	1	1	0	ttgctctttctgaagagctaCgaagacgatgtggaggagct	13	7	2	3	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	UBE3C-704	NM_014671	exon19	c.C2628T	p.Y876Y	GAGCTACGAAGAC	.	109	7	90	0	.	11	11	0	0	0	T	157041208	C	T	157041208	2	4	50	1	0	0	0	0	0	0	0	1	16919	547	19	1		1	UBE3C	7	157041208	Silent	SNP	C	TCGA-OR-A5LC-01A-11D-A29I-10	6167559	157041208	2097455	50	10116										
CSMD3	114788	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr8	114186110	114186110	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0571428571428571	8	0.929330005145667	1.1585279547063	2.97907188353048	0.719086316714254	1	1	0	atataatacacctttgggtgGaacaccaggatttccacaag	8	9	0	0	rs201775807	alternate_allele	TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	CSMD3-1132	NM_052900	exon4	c.C550T	p.P184S	TGGGTGGAACACC	.	78	31	50	0	G|0.999;C|0.001	0	0	0	0	0	A	114186110	G	A	114186110	3	1	50	1	0	0	0	0	1	0	0	0	3952	1174	41	3	10845	3	CSMD3	8	114186110	Missense_Mutation	SNP	G	TCGA-OR-A5LC-01A-11D-A29I-10		114186110	32177912	51	10117										
PLEC	5339	hgsc.bcm.edu	37	chr8	145001588	145001588	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0571428571428571	8	0.929330005145667	1.1585279547063	2.97907188353048	0.719086316714254	1	1	0	ccaagcccacctgctcctgcCgcagctgctcccgcacagcc	8	22	0	0	rs11136334	byfrequency	TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	PLEC-141	NM_201380	exon27	c.G4157A	p.R1386Q	TCCTGCCGCAGCT	.	11	4	1	0	C|0.707;T|0.293	0	0	0	0	0	T	145001588	C	T	145001588	3	4	50	1	0	0	0	0	1	0	0	0	12081	652	23	1	9921	1	PLEC	8	145001588	Missense_Mutation	SNP	C	TCGA-OR-A5LC-01A-11D-A29I-10	30815478	145001588	1362434	52	10118										
OPLAH	26873	hgsc.bcm.edu	37	chr8	145107390	145107390	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0571428571428571	8	0.929330005145667	1.1585279547063	2.97907188353048	0.719086316714254	1	1	0	cccaaaggcccccaggatgaCatccaccacgcgctgcgacg	10	18	0	1	rs185836803		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	OPLAH-68	NM_017570	exon23	c.G3265A	p.V1089I	GGATGACATCCAC	.	21	15	0	0	C|0.998;T|0.002	30	14	16	0	0	T	145107390	C	T	145107390	3	4	50	1	0	0	0	0	1	0	0	0	10905	478	17	3	623	3	OPLAH	8	145107390	Missense_Mutation	SNP	C	TCGA-OR-A5LC-01A-11D-A29I-10	105802	145107390	1256632	53	10119										
UBAP2	55833	bcgsc.ca	37	chr9	33941759	33941759	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0571428571428571	8	0.929330005145667	1.1585279547063	2.97907188353048	0.719086316714254	1	1	0	ttgctactggactagcagaaTtcagtgatgagcttgtcaga	11	7	2	4	rs307658	byfrequency	TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	UBAP2-94	NM_018449	exon16	c.A1817G	p.N606S	GCAGAATTCAGTG	.	85	4	125	1	T|0.481;G|0.077	3	3	0	0	0	C	33941759	T	C	33941759	3	2	50	1	0	0	0	0	1	0	0	0	16875	1493	52	4	1598	4	UBAP2	9	33941759	Missense_Mutation	SNP	T	TCGA-OR-A5LC-01A-11D-A29I-10		33941759	107271672	54	10120										
TLN1	7094	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr9	35716437	35716437	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0571428571428571	8	0.929330005145667	1.1585279547063	2.97907188353048	0.719086316714254	1	1	0	atcagctaggatcttggcagCacttaagagcttgcgggagt	13	8	2	1	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	TLN1-609	NM_006289	exon20	c.G2575A	p.A859T	TGGCAGCACTTAA	.	101	86	148	0	.	7	2	5	0	0	T	35716437	C	T	35716437	3	4	50	1	0	0	0	0	1	0	0	0	15984	710	25	3	5202	3	TLN1	9	35716437	Missense_Mutation	SNP	C	TCGA-OR-A5LC-01A-11D-A29I-10	1774678	35716437	105496994	55	10121										
VPS13A	23230	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr9	79954597	79954597	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0571428571428571	8	0.929330005145667	1.1585279547063	2.97907188353048	0.719086316714254	1	1	0	agcaagacattagttttgtcAgttttacttgtgttacagaa	8	5	1	2	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	VPS13A-161	NM_001018038	exon48	c.A6544T	p.S2182C	TTTGTCAGTTTTA	.	100	49	103	1	.	0	0	0	0	0	T	79954597	A	T	79954597	3	4	50	1	0	0	0	0	1	0	0	0	17227	188	7	5	6734	5	VPS13A	9	79954597	Missense_Mutation	SNP	A	TCGA-OR-A5LC-01A-11D-A29I-10	44238160	79954597	61258834	56	10122										
ALG2	85365	hgsc.bcm.edu	37	chr9	101984160	101984160	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0571428571428571	8	0.929330005145667	1.1585279547063	2.97907188353048	0.719086316714254	1	1	0	gaaccgagtcccgttcccggCcctgctcctccgccatggcc	10	20	0	0	rs180849348	byfrequency	TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	ALG2-92	NM_033087	exon1	c.G17C	p.G6A	TCCCGGCCCTGCT	.	7	6	0	0	C|0.996;G|0.004	5	0	5	0	0	G	101984160	C	G	101984160	3	3	50	1	0	0	0	0	1	0	0	0	519	739	26	3	1241	3	ALG2	9	101984160	Missense_Mutation	SNP	C	TCGA-OR-A5LC-01A-11D-A29I-10	22029563	101984160	39229271	57	10123										
CSGALNACT2	55454	broad.mit.edu	37	chr10	43659419	43659419	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0571428571428571	8	0.929330005145667	1.1585279547063	2.97907188353048	0.719086316714254	1	1	0	tgggacaagggagaggtcttGatgtttttctgtgatgttga	15	3	2	4	rs79064394		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	CSGALNACT2-69	NM_018590	exon5	c.G1086T	p.L362F	GGTCTTGATGTTT	.	194	4	124	0	.	2	2	0	0	0	T	43659419	G	T	43659419	3	4	50	1	0	0	0	0	1	0	0	0	3945	1281	45	3	1100	3	CSGALNACT2	10	43659419	Missense_Mutation	SNP	G	TCGA-OR-A5LC-01A-11D-A29I-10		43659419	91875328	58	10124										
NPFFR1	64106	hgsc.bcm.edu	37	chr10	72014863	72014863	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0571428571428571	8	0.929330005145667	1.1585279547063	2.97907188353048	0.719086316714254	1	1	0	cccgactcagagggcagcccGgagtcgctgggccgcaccac	14	17	1	1	rs60225321	byfrequency	TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	NPFFR1-22	NM_022146	exon4	c.C1143T	p.S381S	CAGCCCGGAGTCG	.	18	11	0	0	G|0.929;A|0.071	0	0	0	0	0	A	72014863	G	A	72014863	2	1	50	1	0	0	0	0	0	0	0	1	10606	1103	39	1		1	NPFFR1	10	72014863	Silent	SNP	G	TCGA-OR-A5LC-01A-11D-A29I-10	28355444	72014863	63519884	59	10125										
NRG3	10718	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr10	84745227	84745227	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0571428571428571	8	0.929330005145667	1.1585279547063	2.97907188353048	0.719086316714254	1	1	0	ggtcagaagactacgaactgGccagcgtagaaaccgaggac	13	10	1	3	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	NRG3-522	NM_001010848	exon9	c.G1957A	p.A653T	GAACTGGCCAGCG	.	96	43	71	0	.	2	2	0	0	0	A	84745227	G	A	84745227	3	1	50	1	0	0	0	0	1	0	0	0	10678	1203	42	3	2235	3	NRG3	10	84745227	Missense_Mutation	SNP	G	TCGA-OR-A5LC-01A-11D-A29I-10	12730364	84745227	50789520	60	10126										
PIK3AP1	118788	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr10	98386618	98386618	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0571428571428571	8	0.929330005145667	1.1585279547063	2.97907188353048	0.719086316714254	1	1	0	aacatcttcttcctgaccaaGatggcactgatctctctcca	5	14	4	3	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	PIK3AP1-519	NM_152309	exon10	c.C1516G	p.L506V	GACCAAGATGGCA	.	187	87	135	0	.	0	0	0	0	0	C	98386618	G	C	98386618	3	2	50	1	0	0	0	0	1	0	0	0	11937	942	33	3	933	3	PIK3AP1	10	98386618	Missense_Mutation	SNP	G	TCGA-OR-A5LC-01A-11D-A29I-10	13641391	98386618	37148129	61	10127										
GPAM	57678	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr10	113924340	113924340	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0571428571428571	8	0.929330005145667	1.1585279547063	2.97907188353048	0.719086316714254	1	1	0	gggaaagtagagcagacaccGgtttctgactttggctttct	12	8	2	3	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	GPAM-92	NM_001244949	exon13	c.C1250T	p.P417L	GACACCGGTTTCT	.	100	48	53	0	.	0	0	0	0	0	A	113924340	G	A	113924340	3	1	50	1	0	0	0	0	1	0	0	0	6608	1116	39	1	1276	1	GPAM	10	113924340	Missense_Mutation	SNP	G	TCGA-OR-A5LC-01A-11D-A29I-10	15537722	113924340	21610407	62	10128										
PNLIP	5406	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr10	118318731	118318731	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0571428571428571	8	0.929330005145667	1.1585279547063	2.97907188353048	0.719086316714254	1	1	0	cactatgctgatagatatccTgggaaaacaaatgatgtggg	11	6	0	3	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	PNLIP-92	NM_000936	exon10	c.T996G	p.P332P	ATATCCTGGGAAA	.	134	62	96	0	.	0	0	0	0	0	G	118318731	T	G	118318731	2	3	50	1	0	0	0	0	0	0	0	1	12178	1567	55	5		5	PNLIP	10	118318731	Silent	SNP	T	TCGA-OR-A5LC-01A-11D-A29I-10	4394391	118318731	17216016	63	10129										
C11orf35	256329	hgsc.bcm.edu	37	chr11	556372	556372	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0571428571428571	8	0.929330005145667	1.1585279547063	2.97907188353048	0.719086316714254	1	1	0	gccacgatcttcaggcctgtCgggctgggaagagaggagac	16	10	2	2	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	C11orf35-69	NM_173573	exon10	c.G1077A	p.P359P	GCCTGTCGGGCTG	.	8	8	0	0	.	1	0	1	0	0	T	556372	C	T	556372	2	4	50	1	0	0	0	0	0	0	0	1	1642	871	31	1		1	C11orf35	11	556372	Silent	SNP	C	TCGA-OR-A5LC-01A-11D-A29I-10		556372	134450144	64	10130										
CDHR5	53841	hgsc.bcm.edu	37	chr11	617593	617593	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0571428571428571	8	0.929330005145667	1.1585279547063	2.97907188353048	0.719086316714254	1	1	0	cgtggggcttccgccagctcGggccgctgcggggggctcag	19	14	1	0	rs137998609	byfrequency	TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	CDHR5-90	NM_021924	exon15	c.C2296G	p.R766G	CAGCTCGGGCCGC	.	20	19	0	0	G|0.990;C|0.010	37	0	37	0	0	C	617593	G	C	617593	3	2	50	1	0	0	0	0	1	0	0	0	3128	1124	39	2	245	2	CDHR5	11	617593	Missense_Mutation	SNP	G	TCGA-OR-A5LC-01A-11D-A29I-10	61221	617593	134388923	65	10131										
MUC5B	727897	ucsc.edu;bcgsc.ca	37	chr11	1253942	1253942	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0571428571428571	8	0.929330005145667	1.1585279547063	2.97907188353048	0.719086316714254	1	1	0	tgcgccgcgctgtcctcctaTgtgcacgcctgtgccgccaa	11	17	0	0	rs908229	byfrequency	TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	.	NM_002458	exon17	c.T2007C	p.Y669Y	CTCCTATGTGCAC	.	123	16	46	0	T|0.463;C|0.537	0	0	0	0	0	C	1253942	T	C	1253942	2	2	50	1	0	0	0	0	0	0	0	1	10007	1471	51	4		4	MUC5B	11	1253942	Silent	SNP	T	TCGA-OR-A5LC-01A-11D-A29I-10	636349	1253942	133752574	66	10132										
MUC5B	727897	hgsc.bcm.edu	37	chr11	1253980	1253980	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0571428571428571	8	0.929330005145667	1.1585279547063	2.97907188353048	0.719086316714254	1	1	0	caagggcgtacagctcagcgActggagggacggcgtctgca	16	11	2	0	rs202127660		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	.	NM_002458	exon17	c.A2045G	p.D682G	TCAGCGACTGGAG	.	102	10	25	0	.	0	0	0	0	0	G	1253980	A	G	1253980	3	3	50	1	0	0	0	0	1	0	0	0	10007	275	10	4	2120	4	MUC5B	11	1253980	Missense_Mutation	SNP	A	TCGA-OR-A5LC-01A-11D-A29I-10	38	1253980	133752536	67	10133										
MUC5B	727897	broad.mit.edu	37	chr11	1267340	1267340	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0571428571428571	8	0.929330005145667	1.1585279547063	2.97907188353048	0.719086316714254	1	1	0	ctccttcacccttgggaccaCcgggaccctcccagaacaga	8	18	1	2	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	.	NM_002458	exon31	c.C9230G	p.T3077S	GGACCACCGGGAC	.	187	5	335	0	.	0	0	0	0	0	G	1267340	C	G	1267340	3	3	50	1	0	0	0	0	1	0	0	0	10007	507	18	3	9361	3	MUC5B	11	1267340	Missense_Mutation	SNP	C	TCGA-OR-A5LC-01A-11D-A29I-10	13360	1267340	133739176	68	10134										
BRSK2	9024	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr11	1471882	1471882	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0571428571428571	8	0.929330005145667	1.1585279547063	2.97907188353048	0.719086316714254	1	1	0	aaggggacacctgtccacacGccaaaggagagcccggctgg	14	13	0	1	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	BRSK2-333	NM_001256630	exon14	c.G1491A	p.T497T	CCACACGCCAAAG	.	80	67	10	0	.	0	0	0	0	0	A	1471882	G	A	1471882	2	1	50	1	0	0	0	0	0	0	0	1	1527	1074	38	1		1	BRSK2	11	1471882	Silent	SNP	G	TCGA-OR-A5LC-01A-11D-A29I-10	204542	1471882	133534634	69	10135										
PLCB3	5331	broad.mit.edu	37	chr11	64034712	64034712	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0571428571428571	8	0.929330005145667	1.1585279547063	2.97907188353048	0.719086316714254	1	1	0	tgtggctgggcagcagcaggTcctgcaacagctggcagaag	16	10	0	1	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	PLCB3-228	NM_000932	exon30	c.T3470G	p.V1157G	AGCAGGTCCTGCA	.	140	20	161	17	.	35	35	0	0	0	G	64034712	T	G	64034712	3	3	50	1	0	0	0	0	1	0	0	0	12058	1667	58	5	3588	5	PLCB3	11	64034712	Missense_Mutation	SNP	T	TCGA-OR-A5LC-01A-11D-A29I-10	62562830	64034712	70971804	70	10136										
GSTP1	2950	bcgsc.ca	37	chr11	67353579	67353579	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0571428571428571	8	0.929330005145667	1.1585279547063	2.97907188353048	0.719086316714254	1	1	0	tggtggtgtctggcaggaggCgggcaaggatgactatgtga	19	5	1	2	rs1138272	byfrequency	TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	GSTP1-91	NM_000852	exon6	c.C341T	p.A114V	AGGAGGCGGGCAA	.	90	6	134	2	C|0.954;T|0.046	1	1	0	0	0	T	67353579	C	T	67353579	3	4	50	1	0	0	0	0	1	0	0	0	6865	768	27	1	363	1	GSTP1	11	67353579	Missense_Mutation	SNP	C	TCGA-OR-A5LC-01A-11D-A29I-10	3318867	67353579	67652937	71	10137										
C11orf92	399948	bcgsc.ca	37	chr11	111167792	111167792	+	RNA	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0571428571428571	8	0.929330005145667	1.1585279547063	2.97907188353048	0.719086316714254	1	1	0	ctctcccccagagatgtggcTtcagctgccaagcaattcct	8	15	2	1	rs10891245	byfrequency	TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	C11orf92-226	.	.	.	.	TGTGGCTTCAGCT	.	52	4	67	0	T|0.700;G|0.300	0	0	0	0	0	G	111167792	T	G	111167792	1	3	50	0	1	0	0	0	0	0	0	0	1676	1624	56	5		5	C11orf92	11	111167792	RNA	SNP	T	TCGA-OR-A5LC-01A-11D-A29I-10	43814213	111167792	23838724	72	10138										
SLC2A13	114134	hgsc.bcm.edu	37	chr12	40499118	40499118	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0571428571428571	8	0.929330005145667	1.1585279547063	2.97907188353048	0.719086316714254	1	1	0	cttgttgttggccgcagccaGcaccgcggagccggcggtga	16	13	0	1	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	SLC2A13-515	NM_052885	exon1	c.C493T	p.L165L	CAGCCAGCACCGC	.	93	50	4	0	.	2	0	2	0	0	A	40499118	G	A	40499118	2	1	50	1	0	0	0	0	0	0	0	1	14577	962	34	3		3	SLC2A13	12	40499118	Silent	SNP	G	TCGA-OR-A5LC-01A-11D-A29I-10		40499118	93352777	73	10139										
TMEM19	55266	hgsc.bcm.edu;broad.mit.edu	37	chr12	72091182	72091182	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0571428571428571	8	0.929330005145667	1.1585279547063	2.97907188353048	0.719086316714254	1	1	0	atttttccaagcagtactccGcttcctggatgtgtttgtct	8	10	1	0	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	TMEM19-90	NM_018279	exon4	c.G505T	p.A169S	TACTCCGCTTCCT	.	72	4	58	0	.	5	5	0	0	0	T	72091182	G	T	72091182	3	4	50	1	0	0	0	0	1	0	0	0	16150	1087	38	2	519	2	TMEM19	12	72091182	Missense_Mutation	SNP	G	TCGA-OR-A5LC-01A-11D-A29I-10	31592064	72091182	61760713	74	10140										
GALNT4	8693	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	89916603	89916603	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0571428571428571	8	0.929330005145667	1.1585279547063	2.97907188353048	0.719086316714254	1	1	0	ttgtgctctatttctcaaaaCtccaaatttgatttttatct	3	8	3	1	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	.	NM_003774	exon1	c.G1724A	p.S575N	TCAAAACTCCAAA	.	104	25	80	2	.	0	0	0	0	0	T	89916603	C	T	89916603	3	4	50	1	0	0	0	0	1	0	0	0	6235	565	20	3	16	3	GALNT4	12	89916603	Missense_Mutation	SNP	C	TCGA-OR-A5LC-01A-11D-A29I-10	17825421	89916603	43935292	75	10141										
C12orf65	91574	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	123738436	123738436	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0571428571428571	8	0.929330005145667	1.1585279547063	2.97907188353048	0.719086316714254	1	1	0	gaaaggacacggtccaggggGccaggcaaccaacaaaacca	12	12	0	0	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	C12orf65-90	NM_001194995	exon2	c.G215T	p.G72V	CAGGGGGCCAGGC	.	139	53	140	1	.	29	15	14	0	0	T	123738436	G	T	123738436	3	4	50	1	0	0	0	0	1	0	0	0	1712	1203	42	3	217	3	C12orf65	12	123738436	Missense_Mutation	SNP	G	TCGA-OR-A5LC-01A-11D-A29I-10	33821833	123738436	10113459	76	10142										
PCDH20	64881	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr13	61986775	61986775	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0571428571428571	8	0.929330005145667	1.1585279547063	2.97907188353048	0.719086316714254	1	1	0	ttgtggtctctagtaaatatTcattattgtatggtttgtaa	8	3	2	0	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	PCDH20-581	NM_022843	exon2	c.A1457G	p.E486G	AAATATTCATTAT	.	177	91	154	0	.	0	0	0	0	0	C	61986775	T	C	61986775	3	2	50	1	0	0	0	0	1	0	0	0	11544	1783	62	4	1402	4	PCDH20	13	61986775	Missense_Mutation	SNP	T	TCGA-OR-A5LC-01A-11D-A29I-10		61986775	53183103	77	10143										
KLF5	688	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr13	73636282	73636282	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0571428571428571	8	0.929330005145667	1.1585279547063	2.97907188353048	0.719086316714254	1	1	0	gactgcccctcctccggcccCgacccaggccctccctgagt	9	22	0	1	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	KLF5-155	NM_001730	exon2	c.C545T	p.P182L	CGGCCCCGACCCA	.	77	38	61	0	.	0	0	0	0	0	T	73636282	C	T	73636282	3	4	50	1	0	0	0	0	1	0	0	0	8370	652	23	1	551	1	KLF5	13	73636282	Missense_Mutation	SNP	C	TCGA-OR-A5LC-01A-11D-A29I-10	11649507	73636282	41533596	78	10144										
LRRC16B	90668	broad.mit.edu	37	chr14	24527404	24527404	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0571428571428571	8	0.929330005145667	1.1585279547063	2.97907188353048	0.719086316714254	1	1	0	ccctcaacagtcacctcagtGacctgcacctggatctcagc	7	17	4	1	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	LRRC16B-139	NM_138360	exon17	c.G1363C	p.D455H	CTCAGTGACCTGC	.	200	5	195	0	.	0	0	0	0	0	C	24527404	G	C	24527404	3	2	50	1	0	0	0	0	1	0	0	0	8999	1290	45	3	1429	3	LRRC16B	14	24527404	Missense_Mutation	SNP	G	TCGA-OR-A5LC-01A-11D-A29I-10		24527404	82822136	79	10145										
INSM2	84684	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr14	36004341	36004341	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0571428571428571	8	0.929330005145667	1.1585279547063	2.97907188353048	0.719086316714254	1	1	0	gcgtagagtaccgctgccctGagtgcgacaaggtgttcagc	14	11	1	2	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	INSM2-226	NM_032594	exon1	c.G883C	p.E295Q	TGCCCTGAGTGCG	.	92	25	23	0	.	0	0	0	0	0	C	36004341	G	C	36004341	3	2	50	1	0	0	0	0	1	0	0	0	7793	1291	45	3	885	3	INSM2	14	36004341	Missense_Mutation	SNP	G	TCGA-OR-A5LC-01A-11D-A29I-10	11476937	36004341	71345199	80	10146										
SLC10A1	6554	broad.mit.edu	37	chr14	70246042	70246042	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0571428571428571	8	0.929330005145667	1.1585279547063	2.97907188353048	0.719086316714254	1	1	0	atggcagagagaactgtgacGgccacactgcacaagagaat	12	9	0	4	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	SLC10A1-91	NM_003049	exon3	c.C603T	p.A201A	TGTGACGGCCACA	.	89	5	92	1	.	0	0	0	0	0	A	70246042	G	A	70246042	2	1	50	1	0	0	0	0	0	0	0	1	14408	1103	39	1		1	SLC10A1	14	70246042	Silent	SNP	G	TCGA-OR-A5LC-01A-11D-A29I-10	34241701	70246042	37103498	81	10147										
CHGA	1113	bcgsc.ca	37	chr14	93401178	93401178	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0571428571428571	8	0.929330005145667	1.1585279547063	2.97907188353048	0.719086316714254	1	1	0	gagagcctgtcggccattgaAgcagagctggagaaagtggc	16	8	0	4	rs941581	byfrequency	TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	CHGA-516	NM_001275	exon8	c.A1323G	p.E441E	CATTGAAGCAGAG	.	232	9	169	0	A|0.243;G|0.757	0	0	0	0	0	G	93401178	A	G	93401178	2	3	50	1	0	0	0	0	0	0	0	1	3344	69	3	4		4	CHGA	14	93401178	Silent	SNP	A	TCGA-OR-A5LC-01A-11D-A29I-10	23155136	93401178	13948362	82	10148										
CKB	1152	hgsc.bcm.edu	37	chr14	103988180	103988180	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0571428571428571	8	0.929330005145667	1.1585279547063	2.97907188353048	0.719086316714254	1	1	0	accgcgagcttctcgatggcGcggcgctccccgcggctgca	14	17	1	0	rs1136165	byfrequency	TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	CKB-115	NM_001823	exon4	c.C456A	p.R152R	GATGGCGCGGCGC	.	5	5	0	0	G|0.327;T|0.673	67	29	38	0	0	T	103988180	G	T	103988180	2	4	50	1	0	0	0	0	0	0	0	1	3452	1074	38	2		2	CKB	14	103988180	Silent	SNP	G	TCGA-OR-A5LC-01A-11D-A29I-10	10587002	103988180	3361360	83	10149										
APBA2	321	broad.mit.edu;bcgsc.ca	37	chr15	29393975	29393975	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0571428571428571	8	0.929330005145667	1.1585279547063	2.97907188353048	0.719086316714254	1	1	0	aagatgatctgccatgtgttCgagtcggaggatgtaagtaa	13	5	1	2	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	APBA2-90	NM_005503	exon9	c.C1512T	p.F504F	TGTGTTCGAGTCG	.	140	6	146	1	.	0	0	0	0	0	T	29393975	C	T	29393975	2	4	50	1	0	0	0	0	0	0	0	1	757	883	31	1		1	APBA2	15	29393975	Silent	SNP	C	TCGA-OR-A5LC-01A-11D-A29I-10		29393975	73137417	84	10150										
MFAP1	4236	broad.mit.edu	37	chr15	44116740	44116740	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0571428571428571	8	0.929330005145667	1.1585279547063	2.97907188353048	0.719086316714254	1	1	0	cgtagactgaatgggcggttGcttcatgagagcgcttggga	16	7	1	3	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	MFAP1-226	NM_005926	exon1	c.C28A	p.Q10K	GCGGTTGCTTCAT	.	204	6	183	0	.	5	5	0	0	0	T	44116740	G	T	44116740	3	4	50	1	0	0	0	0	1	0	0	0	9541	1328	46	3	1327	3	MFAP1	15	44116740	Missense_Mutation	SNP	G	TCGA-OR-A5LC-01A-11D-A29I-10	14722765	44116740	58414652	85	10151										
SPG11	80208	broad.mit.edu	37	chr15	44858189	44858189	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0571428571428571	8	0.929330005145667	1.1585279547063	2.97907188353048	0.719086316714254	1	1	0	gagccgctgacagtgctgggCctgtcgcacacaggagtcct	14	13	0	1	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	SPG11-95	NM_025137	exon38	c.G6862T	p.A2288S	GCTGGGCCTGTCG	.	55	4	80	1	.	27	27	0	0	0	A	44858189	C	A	44858189	3	1	50	1	0	0	0	0	1	0	0	0	15078	739	26	3	481	3	SPG11	15	44858189	Missense_Mutation	SNP	C	TCGA-OR-A5LC-01A-11D-A29I-10	741449	44858189	57673203	86	10152										
PDE8A	5151	hgsc.bcm.edu;bcgsc.ca	37	chr15	85656649	85656650	+	Frame_Shift_Del	DEL	TC	TC	-													0.0571428571428571	8	0.929330005145667	1.1585279547063	2.97907188353048	0.719086316714254	1	1	0	cttccatggcccggatacatTccatgacaattgaggcgccc					novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	TC	TC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	PDE8A-94	NM_002605	exon13	c.1156_1157del	p.386_386del	ATACATTCCATGA	.	156	36	113	0	.	0	0	0	0	0	-	85656650	TC	-	85656649	7	5	50	1	0	1	0	1	0	0	0	0	11682	1783	62	0	1206	0	PDE8A	15	85656649	Frame_Shift_Del	DEL	TC	TCGA-OR-A5LC-01A-11D-A29I-10	40798460	85656649	16874743	87	10153										
PTX4	390667	hgsc.bcm.edu	37	chr16	1537601	1537601	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0571428571428571	8	0.929330005145667	1.1585279547063	2.97907188353048	0.719086316714254	1	1	0	ccacgggcagccgcccctccAgagcagccagcctggcgccc	12	21	0	1	rs2667674	byfrequency	TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	PTX4-90	NM_001013658	exon2	c.T497C	p.L166P	CCCTCCAGAGCAG	.	29	11	0	0	A|0.928;G|0.072	0	0	0	0	0	G	1537601	A	G	1537601	3	3	50	1	0	0	0	0	1	0	0	0	12858	188	7	4	931	4	PTX4	16	1537601	Missense_Mutation	SNP	A	TCGA-OR-A5LC-01A-11D-A29I-10		1537601	88817152	88	10154										
EME2	197342	hgsc.bcm.edu	37	chr16	1823444	1823444	+	Silent	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.0571428571428571	8	0.929330005145667	1.1585279547063	2.97907188353048	0.719086316714254	1	1	0	ctgctgcggccggagcaggtCctgaagcgcctcgcggtgtg	17	13	0	1	rs761065		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	EME2-229	NM_001257370	exon1	c.C216G	p.V72V	GCAGGTCCTGAAG	.	9	5	0	0	C|0.615;G|0.385	0	0	0	0	0	G	1823444	C	G	1823444	2	3	50	1	0	0	0	0	0	0	0	1	5102	842	30	3		3	EME2	16	1823444	Silent	SNP	C	TCGA-OR-A5LC-01A-11D-A29I-10	285843	1823444	88531309	89	10155										
PKD1	5310	hgsc.bcm.edu	37	chr16	2156447	2156447	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0571428571428571	8	0.929330005145667	1.1585279547063	2.97907188353048	0.719086316714254	1	1	0	gagggcgtgcacagcgcccaGtgggaagaggcggcaagagc	19	10	0	2	rs2003782	bycluster;byfrequency;by1000genomes	TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	PKD1-91	NM_000296	exon18	c.C7441T	p.L2481L	CGCCCAGTGGGAA	.	21	11	0	0	G|0.793;A|0.207	21	18	3	0	0	A	2156447	G	A	2156447	2	1	50	1	0	0	0	0	0	0	0	1	11992	1020	36	3		3	PKD1	16	2156447	Silent	SNP	G	TCGA-OR-A5LC-01A-11D-A29I-10	333003	2156447	88198306	90	10156										
FLYWCH1	84256	hgsc.bcm.edu	37	chr16	2980747	2980747	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0571428571428571	8	0.929330005145667	1.1585279547063	2.97907188353048	0.719086316714254	1	1	0	gcccctggagggggtgggccCgtggcagtgccctgaggagc	20	12	0	1	rs201356969		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	FLYWCH1-22	NM_020912	exon4	c.C659T	p.P220L	TGGGCCCGTGGCA	.	42	20	4	0	.	7	3	4	0	0	T	2980747	C	T	2980747	3	4	50	1	0	0	0	0	1	0	0	0	5966	652	23	1	665	1	FLYWCH1	16	2980747	Missense_Mutation	SNP	C	TCGA-OR-A5LC-01A-11D-A29I-10	824300	2980747	87374006	91	10157										
MEFV	4210	hgsc.bcm.edu	37	chr16	3304573	3304573	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0571428571428571	8	0.929330005145667	1.1585279547063	2.97907188353048	0.719086316714254	1	1	0	tgcgcgtccaggccctccgaGgccttctctctgcgtttgct	11	16	2	0	rs224223	byfrequency	TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	MEFV-228	NM_000243	exon2	c.C495A	p.A165A	CTCCGAGGCCTTC	.	16	13	0	0	G|0.570;T|0.430	0	0	0	0	0	T	3304573	G	T	3304573	2	4	50	1	0	0	0	0	0	0	0	1	9487	987	35	3		3	MEFV	16	3304573	Silent	SNP	G	TCGA-OR-A5LC-01A-11D-A29I-10	323826	3304573	87050180	92	10158										
ATXN2L	11273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr16	28844676	28844676	+	Splice_Site	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0571428571428571	8	0.929330005145667	1.1585279547063	2.97907188353048	0.719086316714254	1	1	0	gatgagggccctgttgctgaGtgagtggagcggggtggggc	22	6	0	3	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	ATXN2L-92	NM_145714	exon14	c.1955+1G>T	.	TGCTGAGTGAGTG	.	89	43	79	0	.	9	0	9	0	0	T	28844676	G	T	28844676	5	4	50	1	0	0	0	0	0	0	1	0	1213	1043	36	3	2010	3	ATXN2L	16	28844676	Splice_Site	SNP	G	TCGA-OR-A5LC-01A-11D-A29I-10	25540103	28844676	61510077	93	10159										
SEZ6L2	26470	hgsc.bcm.edu	37	chr16	29908433	29908433	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0571428571428571	8	0.929330005145667	1.1585279547063	2.97907188353048	0.719086316714254	1	1	0	gggtggctagcgtggggtccCgatcagatcctgggacagtg	18	9	1	1	rs11649499	byfrequency	TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	SEZ6L2-92	NM_001243332	exon3	c.G221C	p.R74P	GGGTCCCGATCAG	.	8	8	0	0	C|0.218;G|0.782	0	0	0	0	0	G	29908433	C	G	29908433	3	3	50	1	0	0	0	0	1	0	0	0	14179	652	23	2	2614	2	SEZ6L2	16	29908433	Missense_Mutation	SNP	C	TCGA-OR-A5LC-01A-11D-A29I-10	1063757	29908433	60446320	94	10160										
CCDC102A	92922	hgsc.bcm.edu	37	chr16	57562804	57562804	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0571428571428571	8	0.929330005145667	1.1585279547063	2.97907188353048	0.719086316714254	1	1	0	ggcagtgcagtccgaccaccGgcgcatggtcttctccatct	11	15	3	0	rs12935069		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	CCDC102A-91	NM_033212	exon2	c.C286T	p.R96W	ACCACCGGCGCAT	.	7	7	0	0	G|0.001;A|0.999	0	0	0	0	0	A	57562804	G	A	57562804	3	1	50	1	0	0	0	0	1	0	0	0	2742	1115	39	1	1398	1	CCDC102A	16	57562804	Missense_Mutation	SNP	G	TCGA-OR-A5LC-01A-11D-A29I-10	27654371	57562804	32791949	95	10161										
ZFPM1	161882	hgsc.bcm.edu	37	chr16	88520086	88520086	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0571428571428571	8	0.929330005145667	1.1585279547063	2.97907188353048	0.719086316714254	1	1	0	gcaacccccggcagatcaagCgtgagtcaaactttgcccgc	10	15	2	2	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	ZFPM1-90	NM_153813	exon1	c.C40T	p.R14C	ATCAAGCGTGAGT	.	8	4	0	0	.	0	0	0	0	0	T	88520086	C	T	88520086	3	4	50	1	0	0	0	0	1	0	0	0	17694	782	27	1	42	1	ZFPM1	16	88520086	Missense_Mutation	SNP	C	TCGA-OR-A5LC-01A-11D-A29I-10	30957282	88520086	1834667	96	10162										
C17orf97	400566	hgsc.bcm.edu	37	chr17	260182	260182	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0571428571428571	8	0.929330005145667	1.1585279547063	2.97907188353048	0.719086316714254	1	1	0	tccgcgctgagagtcgccgaTtagtcggcatcgggcctcgg	15	13	0	1	rs7502594		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	C17orf97-91	NM_001013672	exon1	c.T49C	p.L17L	CGCCGATTAGTCG	.	10	7	0	0	T|0.657;C|0.343	0	0	0	0	0	C	260182	T	C	260182	2	2	50	1	0	0	0	0	0	0	0	1	1898	1490	52	4		4	C17orf97	17	260182	Silent	SNP	T	TCGA-OR-A5LC-01A-11D-A29I-10		260182	80935028	97	10163										
HIC1	3090	hgsc.bcm.edu	37	chr17	1960974	1960974	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0571428571428571	8	0.929330005145667	1.1585279547063	2.97907188353048	0.719086316714254	1	1	0	gacgagctgggccgggagcgCggctcccccagcgagcgctg	18	15	0	0	rs77393586		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	HIC1-135	NM_001098202	exon2	c.C1047T	p.R349R	GGAGCGCGGCTCC	.	10	5	0	0	C|0.839;T|0.161	0	0	0	0	0	T	1960974	C	T	1960974	2	4	50	1	0	0	0	0	0	0	0	1	7122	755	27	1		1	HIC1	17	1960974	Silent	SNP	C	TCGA-OR-A5LC-01A-11D-A29I-10	1700792	1960974	79234236	98	10164										
GSG2	83903	broad.mit.edu	37	chr17	3629267	3629267	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0571428571428571	8	0.929330005145667	1.1585279547063	2.97907188353048	0.719086316714254	1	1	0	gcagcactatccccagctgtGggttgcaagtgagcatcatt	11	11	1	1	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	GSG2-297	NM_031965	exon1	c.G2038T	p.G680W	AGCTGTGGGTTGC	.	82	3	55	0	.	1	1	0	0	0	T	3629267	G	T	3629267	3	4	50	1	0	0	0	0	1	0	0	0	6843	1348	47	3	2040	3	GSG2	17	3629267	Missense_Mutation	SNP	G	TCGA-OR-A5LC-01A-11D-A29I-10	1668293	3629267	77565943	99	10165										
KRTAP4-7	100132476	bcgsc.ca	37	chr17	39240737	39240737	+	Missense_Mutation	SNP	C	C	G													0.0571428571428571	8	0.929330005145667	1.1585279547063	2.97907188353048	0.719086316714254	1	1	0	cccagctgctgtatgtccagCtgctgcaagccccagtgctg					rs201389180		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	.	NM_033061	exon1	c.C279G	p.S93R	GTCCAGCTGCTGC	.	122	37	31	0	.	0	0	0	0	0	G	39240737	C	G	39240737	3	3	50	1	0	0	0	0	1	0	0	0	8577	796	28	3	281	3	KRTAP4-7	17	39240737	Missense_Mutation	SNP	C	TCGA-OR-A5LC-01A-11D-A29I-10	35611470	39240737	41954473	100	10166	117	2								
KRTAP4-7	100132476	bcgsc.ca	37	chr17	39240745	39240745	+	Missense_Mutation	SNP	A	A	G													0.0571428571428571	8	0.929330005145667	1.1585279547063	2.97907188353048	0.719086316714254	1	1	0	ctgtatgtccagctgctgcaAgccccagtgctgccagtctg					rs199744933		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	.	NM_033061	exon1	c.A287G	p.K96R	GCTGCAAGCCCCA	.	119	41	28	1	.	0	0	0	0	0	G	39240745	A	G	39240745	3	3	50	1	0	0	0	0	1	0	0	0	8577	72	3	4	289	4	KRTAP4-7	17	39240745	Missense_Mutation	SNP	A	TCGA-OR-A5LC-01A-11D-A29I-10	8	39240745	41954465	101	10167	117	2								
NPTX1	4884	hgsc.bcm.edu	37	chr17	78449948	78449948	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0571428571428571	8	0.929330005145667	1.1585279547063	2.97907188353048	0.719086316714254	1	1	0	cgccgcccgcccgggcctcgCcggctccggggtccagcgtg	16	20	0	0	rs144443274		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	NPTX1-90	NM_002522	exon1	c.G299A	p.G100D	GCCTCGCCGGCTC	.	6	4	0	0	C|0.910;T|0.090	1	0	1	0	0	T	78449948	C	T	78449948	3	4	50	1	0	0	0	0	1	0	0	0	10631	739	26	3	1019	3	NPTX1	17	78449948	Missense_Mutation	SNP	C	TCGA-OR-A5LC-01A-11D-A29I-10	39209203	78449948	2745262	102	10168										
MYO1F	4542	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	8595175	8595175	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0571428571428571	8	0.929330005145667	1.1585279547063	2.97907188353048	0.719086316714254	1	1	0	ctcgggccgctcctccagccCcaggtagtccccgacgaagt	11	18	0	0	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	MYO1F-93	NM_012335	exon21	c.G2233T	p.G745W	CCAGCCCCAGGTA	.	167	38	144	0	.	0	0	0	0	0	A	8595175	C	A	8595175	3	1	50	1	0	0	0	0	1	0	0	0	10101	623	22	3	1095	3	MYO1F	19	8595175	Missense_Mutation	SNP	C	TCGA-OR-A5LC-01A-11D-A29I-10		8595175	50533808	103	10169										
RLN3	117579	bcgsc.ca	37	chr19	14141666	14141666	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0571428571428571	8	0.929330005145667	1.1585279547063	2.97907188353048	0.719086316714254	1	1	0	cagctggcaaggaacccctgGggttcttcggggcagccgag	16	12	1	0	rs78161395	byfrequency	TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	RLN3-90	NM_080864	exon2	c.G335T	p.G112V	CCCCTGGGGTTCT	.	104	5	80	0	G|0.865;T|0.135	0	0	0	0	0	T	14141666	G	T	14141666	3	4	50	1	0	0	0	0	1	0	0	0	13428	1232	43	3	341	3	RLN3	19	14141666	Missense_Mutation	SNP	G	TCGA-OR-A5LC-01A-11D-A29I-10	5546491	14141666	44987317	104	10170										
OR7A10	390892	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	14951843	14951843	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0571428571428571	8	0.929330005145667	1.1585279547063	2.97907188353048	0.719086316714254	1	1	0	gatgaaggggttcagcatggGggtgaccacagtgtacatca	15	7	2	2	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	OR7A10-68	NM_001005190	exon1	c.C847A	p.P283T	GCATGGGGGTGAC	.	140	66	92	0	.	0	0	0	0	0	T	14951843	G	T	14951843	3	4	50	1	0	0	0	0	1	0	0	0	11243	1232	43	3	86	3	OR7A10	19	14951843	Missense_Mutation	SNP	G	TCGA-OR-A5LC-01A-11D-A29I-10	810177	14951843	44177140	105	10171										
SLC27A1	376497	hgsc.bcm.edu	37	chr19	17597661	17597661	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0571428571428571	8	0.929330005145667	1.1585279547063	2.97907188353048	0.719086316714254	1	1	0	tgggcctggccaaggcgggcAtggaggccgcgctgctcaac	17	13	1	0	rs61743602	byfrequency	TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	SLC27A1-226	NM_198580	exon2	c.A457T	p.M153L	GCGGGCATGGAGG	.	16	10	0	0	A|0.993;T|0.007	1	0	1	0	0	T	17597661	A	T	17597661	3	4	50	1	0	0	0	0	1	0	0	0	14560	217	8	5	463	5	SLC27A1	19	17597661	Missense_Mutation	SNP	A	TCGA-OR-A5LC-01A-11D-A29I-10	2645818	17597661	41531322	106	10172										
ZNF254	9534	hgsc.bcm.edu;mdanderson.org	37	chr19	24310744	24310744	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0571428571428571	8	0.929330005145667	1.1585279547063	2.97907188353048	0.719086316714254	1	1	0	ggtcctcgcacctcaccacaGataagataactcattggaga	8	12	2	3	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	ZNF254-90	NM_203282	exon4	c.G1942A	p.D648N	ACCACAGATAAGA	.	16	7	8	0	.	3	2	1	0	0	A	24310744	G	A	24310744	3	1	50	1	0	0	0	0	1	0	0	0	17835	942	33	3	1956	3	ZNF254	19	24310744	Missense_Mutation	SNP	G	TCGA-OR-A5LC-01A-11D-A29I-10	6713083	24310744	34818239	107	10173										
LRP3	4037	hgsc.bcm.edu	37	chr19	33698018	33698018	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0571428571428571	8	0.929330005145667	1.1585279547063	2.97907188353048	0.719086316714254	1	1	0	gctctttcaccggccgcgggCgccccgaggccagatcccac	12	19	2	1	rs11539586		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	LRP3-92	NM_002333	exon7	c.C1850T	p.A617V	CGCGGGCGCCCCG	.	14	9	0	0	T|0.000;G|0.967	53	27	25	0	1	T	33698018	C	T	33698018	3	4	50	1	0	0	0	0	1	0	0	0	8985	768	27	1	1876	1	LRP3	19	33698018	Missense_Mutation	SNP	C	TCGA-OR-A5LC-01A-11D-A29I-10	9387274	33698018	25430965	108	10174										
SLC7A10	56301	broad.mit.edu	37	chr19	33699842	33699842	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0571428571428571	8	0.929330005145667	1.1585279547063	2.97907188353048	0.719086316714254	1	1	0	gtggcaggcagcagggagggTgggcaggggccattctcctc	19	10	1	0	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	SLC7A10-91	NM_019849	exon11	c.A1527C	p.P509P	GGAGGGTGGGCAG	.	58	13	40	7	.	0	0	0	0	0	G	33699842	T	G	33699842	2	3	50	1	0	0	0	0	0	0	0	1	14728	1683	59	5		5	SLC7A10	19	33699842	Silent	SNP	T	TCGA-OR-A5LC-01A-11D-A29I-10	1824	33699842	25429141	109	10175										
FFAR1	2864	broad.mit.edu;mdanderson.org	37	chr19	35843174	35843174	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0571428571428571	8	0.929330005145667	1.1585279547063	2.97907188353048	0.719086316714254	1	1	0	ctgctctgcgtaggaccctaCaacgcctccaacgtggccag	10	16	1	0	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	FFAR1-90	NM_005303	exon1	c.C720A	p.Y240X	ACCCTACAACGCC	.	40	11	34	0	.	0	0	0	0	0	A	35843174	C	A	35843174	4	1	50	1	0	0	0	0	0	1	0	0	5846	489	17	3	722	3	FFAR1	19	35843174	Nonsense_Mutation	SNP	C	TCGA-OR-A5LC-01A-11D-A29I-10	2143332	35843174	23285809	110	10176										
CATSPERG	57828	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	38845375	38845375	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0571428571428571	8	0.929330005145667	1.1585279547063	2.97907188353048	0.719086316714254	1	1	0	tggattcgtgtcctggccagCgagtgcatcaagaagctgtg	14	9	1	1	rs114967522		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	CATSPERG-92	NM_021185	exon9	c.C1023T	p.S341S	GGCCAGCGAGTGC	.	182	82	119	0	C|0.999;T|0.001	0	0	0	0	0	T	38845375	C	T	38845375	2	4	50	1	0	0	0	0	0	0	0	1	2698	767	27	1		1	CATSPERG	19	38845375	Silent	SNP	C	TCGA-OR-A5LC-01A-11D-A29I-10	3002201	38845375	20283608	111	10177										
RINL	126432	hgsc.bcm.edu	37	chr19	39360720	39360720	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0571428571428571	8	0.929330005145667	1.1585279547063	2.97907188353048	0.719086316714254	1	1	0	ggctccgcaaggcgggggcgGggctctgcccttccggtccc	17	16	1	0	rs8110393		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	RINL-91	NM_001195833	exon9	c.C1205T	p.P402L	GGGGCGGGGCTCT	.	9	9	0	0	G|0.349;A|0.651	0	0	0	0	0	A	39360720	G	A	39360720	3	1	50	1	0	0	0	0	1	0	0	0	13410	1232	43	3	511	3	RINL	19	39360720	Missense_Mutation	SNP	G	TCGA-OR-A5LC-01A-11D-A29I-10	515345	39360720	19768263	112	10178										
ZNF234	10780	bcgsc.ca	37	chr19	44660559	44660559	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0571428571428571	8	0.929330005145667	1.1585279547063	2.97907188353048	0.719086316714254	1	1	0	ttccccagacaaggtgatttGtcctgccaggttagggcagg	13	10	0	2	rs151243299	byfrequency	TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	.	NM_006630	exon6	c.G390T	p.L130F	TGATTTGTCCTGC	.	209	7	169	0	G|0.993;T|0.007	0	0	0	0	0	T	44660559	G	T	44660559	3	4	50	1	0	0	0	0	1	0	0	0	17824	1368	48	3	404	3	ZNF234	19	44660559	Missense_Mutation	SNP	G	TCGA-OR-A5LC-01A-11D-A29I-10	5299839	44660559	14468424	113	10179										
GLTSCR2	29997	hgsc.bcm.edu	37	chr19	48258619	48258619	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0571428571428571	8	0.929330005145667	1.1585279547063	2.97907188353048	0.719086316714254	1	1	0	ccacagcgggtacagcaggcCgcgttgcgggccgcccggct	16	16	0	0	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	GLTSCR2-514	NM_015710	exon9	c.C1068T	p.A356A	GCAGGCCGCGTTG	.	13	7	0	0	.	299	158	141	0	0	T	48258619	C	T	48258619	2	4	50	1	0	0	0	0	0	0	0	1	6495	639	23	1		1	GLTSCR2	19	48258619	Silent	SNP	C	TCGA-OR-A5LC-01A-11D-A29I-10	3598060	48258619	10870364	114	10180										
RASIP1	54922	hgsc.bcm.edu	37	chr19	49232226	49232226	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0571428571428571	8	0.929330005145667	1.1585279547063	2.97907188353048	0.719086316714254	1	1	0	cttgatgagccgggccaggcGgcccagcagtcgtggcaggt	17	12	0	2	rs2287922		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	RASIP1-228	NM_017805	exon5	c.C1801T	p.R601C	CCAGGCGGCCCAG	.	5	5	0	0	G|0.738;A|0.262	15	0	15	0	0	A	49232226	G	A	49232226	3	1	50	1	0	0	0	0	1	0	0	0	13113	1116	39	1	1122	1	RASIP1	19	49232226	Missense_Mutation	SNP	G	TCGA-OR-A5LC-01A-11D-A29I-10	973607	49232226	9896757	115	10181										
TRPM4	54795	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr19	49699903	49699903	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0571428571428571	8	0.929330005145667	1.1585279547063	2.97907188353048	0.719086316714254	1	1	0	ggtgctgctcgtggatttccAgccggcgccgcccggctccc	14	17	0	0	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	TRPM4-91	NM_017636	exon17	c.A2417G	p.Q806R	ATTTCCAGCCGGC	.	55	26	24	0	.	2	2	0	0	0	G	49699903	A	G	49699903	3	3	50	1	0	0	0	0	1	0	0	0	16626	188	7	4	2483	4	TRPM4	19	49699903	Missense_Mutation	SNP	A	TCGA-OR-A5LC-01A-11D-A29I-10	467677	49699903	9429080	116	10182										
SLC6A16	28968	broad.mit.edu	37	chr19	49812163	49812163	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0571428571428571	8	0.929330005145667	1.1585279547063	2.97907188353048	0.719086316714254	1	1	0	agcgatgtgtgatgactgtcGcccagaagcccaggacacag	13	11	0	3	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	SLC6A16-94	NM_014037	exon7	c.C1199T	p.A400V	ACTGTCGCCCAGA	.	148	5	112	0	.	0	0	0	0	0	A	49812163	G	A	49812163	3	1	50	1	0	0	0	0	1	0	0	0	14714	1087	38	1	1035	1	SLC6A16	19	49812163	Missense_Mutation	SNP	G	TCGA-OR-A5LC-01A-11D-A29I-10	112260	49812163	9316820	117	10183										
TSKS	60385	hgsc.bcm.edu	37	chr19	50249883	50249883	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0571428571428571	8	0.929330005145667	1.1585279547063	2.97907188353048	0.719086316714254	1	1	0	gcgggccggggcagccctggGacgtggcggcggggcccagg	23	13	0	0	rs142807989	byfrequency	TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	TSKS-154	NM_021733	exon6	c.C836T	p.S279F	CCCTGGGACGTGG	.	22	13	0	0	G|0.999;A|0.001	0	0	0	0	0	A	50249883	G	A	50249883	3	1	50	1	0	0	0	0	1	0	0	0	16664	1174	41	3	966	3	TSKS	19	50249883	Missense_Mutation	SNP	G	TCGA-OR-A5LC-01A-11D-A29I-10	437720	50249883	8879100	118	10184										
SHANK1	50944	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	51172454	51172454	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0571428571428571	8	0.929330005145667	1.1585279547063	2.97907188353048	0.719086316714254	1	1	0	ggggacgtggtgggtggcggGggaatgtcctccgaaccagg	21	8	0	0	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	SHANK1-153	NM_016148	exon22	c.C2763A	p.P921P	TGGCGGGGGAATG	.	40	18	26	0	.	0	0	0	0	0	T	51172454	G	T	51172454	2	4	50	1	0	0	0	0	0	0	0	1	14299	1219	43	3		3	SHANK1	19	51172454	Silent	SNP	G	TCGA-OR-A5LC-01A-11D-A29I-10	922571	51172454	7956529	119	10185										
DPRX	503834	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	54140161	54140161	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0571428571428571	8	0.929330005145667	1.1585279547063	2.97907188353048	0.719086316714254	1	1	0	aatatatactgcctctacccCattttggaatcccaagtttg	5	11	1	0	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	DPRX-90	NM_001012728	exon3	c.C495G	p.P165P	CTACCCCATTTTG	.	166	71	130	0	.	0	0	0	0	0	G	54140161	C	G	54140161	2	3	50	1	0	0	0	0	0	0	0	1	4749	581	21	3		3	DPRX	19	54140161	Silent	SNP	C	TCGA-OR-A5LC-01A-11D-A29I-10	2967707	54140161	4988822	120	10186										
TMC4	147798	bcgsc.ca	37	chr19	54676763	54676763	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0571428571428571	8	0.929330005145667	1.1585279547063	2.97907188353048	0.719086316714254	1	1	0	cctcccggggggccagccacCccctagaggagccccaggct	13	19	0	1	rs641738	byfrequency	TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	TMC4-91	NM_001145303	exon1	c.G50A	p.G17E	AGCCACCCCCTAG	.	64	5	59	0	C|0.615;T|0.385	0	0	0	0	0	T	54676763	C	T	54676763	3	4	50	1	0	0	0	0	1	0	0	0	16024	623	22	3	2148	3	TMC4	19	54676763	Missense_Mutation	SNP	C	TCGA-OR-A5LC-01A-11D-A29I-10	536602	54676763	4452220	121	10187										
ZNF814	730051	ucsc.edu	37	chr19	58384712	58384712	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0571428571428571	8	0.929330005145667	1.1585279547063	2.97907188353048	0.719086316714254	1	1	0	acataaggtctttctccagtAtggccatgctggtgtagaat	10	8	2	1	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	.	NM_001144989	exon3	c.T2046C	p.H682H	TCCAGTATGGCCA	.	189	1	139	0	.	5	3	2	0	0	G	58384712	A	G	58384712	2	3	50	1	0	0	0	0	0	0	0	1	18213	446	16	4		4	ZNF814	19	58384712	Silent	SNP	A	TCGA-OR-A5LC-01A-11D-A29I-10	3707949	58384712	744271	122	10188										
ZNF606	80095	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	58500063	58500063	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0571428571428571	8	0.929330005145667	1.1585279547063	2.97907188353048	0.719086316714254	1	1	0	tcttcttgggtgaagtccacGgccacgtccttgaaggtcac	11	12	3	2	rs182994172	alternate_allele	TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	ZNF606-92	NM_025027	exon5	c.C204T	p.A68A	GTCCACGGCCACG	.	90	43	67	1	G|0.999;T|0.001	0	0	0	0	0	A	58500063	G	A	58500063	2	1	50	1	0	0	0	0	0	0	0	1	18069	1103	39	1		1	ZNF606	19	58500063	Silent	SNP	G	TCGA-OR-A5LC-01A-11D-A29I-10	115351	58500063	628920	123	10189										
IFT52	51098	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr20	42233641	42233641	+	Splice_Site	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0571428571428571	8	0.929330005145667	1.1585279547063	2.97907188353048	0.719086316714254	1	1	0	ttttaatttttcttcttcaaGggaaattagccgagctgcag	8	7	3	0	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	IFT52-92	NM_016004	exon6	c.414-1G>T	.	CTTCAAGGGAAAT	.	69	31	48	0	.	0	0	0	0	0	T	42233641	G	T	42233641	5	4	50	1	0	0	0	0	0	0	1	0	7582	1014	35	3	431	3	IFT52	20	42233641	Splice_Site	SNP	G	TCGA-OR-A5LC-01A-11D-A29I-10		42233641	20791879	124	10190										
SYCP2	10388	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr20	58450354	58450354	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0571428571428571	8	0.929330005145667	1.1585279547063	2.97907188353048	0.719086316714254	1	1	0	acttctatagatgatggactGccagataaagatctgggaga	11	6	2	5	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	SYCP2-525	NM_014258	exon33	c.C3321A	p.G1107G	TGGACTGCCAGAT	.	69	6	52	0	.	0	0	0	0	0	T	58450354	G	T	58450354	2	4	50	1	0	0	0	0	0	0	0	1	15469	1306	46	3		3	SYCP2	20	58450354	Silent	SNP	G	TCGA-OR-A5LC-01A-11D-A29I-10	16216713	58450354	4575166	125	10191										
RGS19	10287	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr20	62705725	62705725	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0571428571428571	8	0.929330005145667	1.1585279547063	2.97907188353048	0.719086316714254	1	1	0	tgcacctcctcaggacttggCgtggcactgtgggcacgggg	16	12	1	0	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	RGS19-227	NM_005873	exon5	c.G234A	p.T78T	ACTTGGCGTGGCA	.	131	64	26	0	.	0	0	0	0	0	T	62705725	C	T	62705725	2	4	50	1	0	0	0	0	0	0	0	1	13336	755	27	1		1	RGS19	20	62705725	Silent	SNP	C	TCGA-OR-A5LC-01A-11D-A29I-10	4255371	62705725	319795	126	10192										
CLIC6	54102	hgsc.bcm.edu	37	chr21	36041978	36041978	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0571428571428571	8	0.929330005145667	1.1585279547063	2.97907188353048	0.719086316714254	1	1	0	gagggtgccgaggtgccccaAggaggggaggagacaagcgg	21	8	0	1	rs7280973		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	CLIC6-91	NM_053277	exon1	c.A291G	p.Q97Q	GCCCCAAGGAGGG	.	4	4	0	0	A|0.001;G|0.999	0	0	0	0	0	G	36041978	A	G	36041978	2	3	50	1	0	0	0	0	0	0	0	1	3536	69	3	4		4	CLIC6	21	36041978	Silent	SNP	A	TCGA-OR-A5LC-01A-11D-A29I-10		36041978	12087917	127	10193										
CLIC6	54102	hgsc.bcm.edu	37	chr21	36042579	36042579	+	Missense_Mutation	SNP	C	C	G													0.0571428571428571	8	0.929330005145667	1.1585279547063	2.97907188353048	0.719086316714254	1	1	0	gggtctcgggtgagccgcagCaatcgggggacggcagcctc					rs13049028	byfrequency	TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	CLIC6-91	NM_053277	exon1	c.C892G	p.Q298E	CCGCAGCAATCGG	.	13	13	0	0	C|0.802;G|0.198	0	0	0	0	0	G	36042579	C	G	36042579	3	3	50	1	0	0	0	0	1	0	0	0	3536	711	25	3	894	3	CLIC6	21	36042579	Missense_Mutation	SNP	C	TCGA-OR-A5LC-01A-11D-A29I-10	601	36042579	12087316	128	10194	118	2								
CLIC6	54102	hgsc.bcm.edu	37	chr21	36042584	36042584	+	Silent	SNP	G	G	A													0.0571428571428571	8	0.929330005145667	1.1585279547063	2.97907188353048	0.719086316714254	1	1	0	tcgggtgagccgcagcaatcGggggacggcagcctctcgcc					rs13049239	byfrequency	TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	CLIC6-91	NM_053277	exon1	c.G897A	p.S299S	GCAATCGGGGGAC	.	13	13	0	0	G|0.803;A|0.197	0	0	0	0	0	A	36042584	G	A	36042584	2	1	50	1	0	0	0	0	0	0	0	1	3536	1103	39	1		1	CLIC6	21	36042584	Silent	SNP	G	TCGA-OR-A5LC-01A-11D-A29I-10	5	36042584	12087311	129	10195	118	2								
U2AF1	7307	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr21	44524486	44524486	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0571428571428571	8	0.929330005145667	1.1585279547063	2.97907188353048	0.719086316714254	1	1	0	ctccatgacgacatgctccaAttttgaaataaaatgaacag	6	9	0	3	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	U2AF1-90	NM_001025203	exon2	c.T71C	p.I24T	GCTCCAATTTTGA	.	125	44	137	0	.	75	56	19	0	0	G	44524486	A	G	44524486	3	3	50	1	0	0	0	0	1	0	0	0	16859	101	4	4	750	4	U2AF1	21	44524486	Missense_Mutation	SNP	A	TCGA-OR-A5LC-01A-11D-A29I-10	8481902	44524486	3605409	130	10196										
COL6A2	1292	hgsc.bcm.edu	37	chr21	47552201	47552201	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0571428571428571	8	0.929330005145667	1.1585279547063	2.97907188353048	0.719086316714254	1	1	0	caatgccatcgtgcgcagccCgcgtggcggggcccggaggc	17	15	0	0	rs117725825	byfrequency	TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	COL6A2-515	NM_001849	exon28	c.C2795T	p.P932L	GCAGCCCGCGTGG	.	82	58	6	0	C|0.998;T|0.002	340	139	201	0	0	T	47552201	C	T	47552201	3	4	50	1	0	0	0	0	1	0	0	0	3706	652	23	1	3231	1	COL6A2	21	47552201	Missense_Mutation	SNP	C	TCGA-OR-A5LC-01A-11D-A29I-10	3027715	47552201	577694	131	10197										
MN1	4330	hgsc.bcm.edu	37	chr22	28194895	28194900	+	In_Frame_Del	DEL	TGCTGT	TGCTGT	-													0.0571428571428571	8	0.929330005145667	1.1585279547063	2.97907188353048	0.719086316714254	1	1	0	tttggcgctgctgctgctgcTgctgttgctgttgctgttgc					rs75719175	alternate_allele	TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	TGCTGT	TGCTGT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	MN1-993	NM_002430	exon1	c.1632_1637del	p.544_546del	TGCTGCTGCTGTT	.	33	26	8	0	.	0	0	0	0	0	-	28194900	TGCTGT	-	28194895	7	5	50	1	0	1	0	1	0	0	0	0	9701	1580	55	0	2333	0	MN1	22	28194895	In_Frame_Del	DEL	TGCTGT	TCGA-OR-A5LC-01A-11D-A29I-10		28194895	23109671	132	10198										
RHBDD3	25807	bcgsc.ca	37	chr22	29656389	29656389	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0571428571428571	8	0.929330005145667	1.1585279547063	2.97907188353048	0.719086316714254	1	1	0	gctggcccgtcaagaagcgaGgcctggatgccctcctgcag	14	14	1	1	rs2231398	byfrequency	TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	RHBDD3-91	NM_012265	exon6	c.C909A	p.A303A	AAGCGAGGCCTGG	.	78	5	88	1	G|0.749;T|0.251	22	22	0	0	0	T	29656389	G	T	29656389	2	4	50	1	0	0	0	0	0	0	0	1	13353	987	35	3		3	RHBDD3	22	29656389	Silent	SNP	G	TCGA-OR-A5LC-01A-11D-A29I-10	1461494	29656389	21648177	133	10199										
SEC14L4	284904	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr22	30887672	30887672	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0571428571428571	8	0.929330005145667	1.1585279547063	2.97907188353048	0.719086316714254	1	1	0	gcactctgctgctcccccatCttggtcttcaggaaaacccc	7	17	4	0	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	SEC14L4-91	NM_001161368	exon11	c.G969C	p.K323N	CCCCATCTTGGTC	.	75	6	104	0	.	0	0	0	0	0	G	30887672	C	G	30887672	3	3	50	1	0	0	0	0	1	0	0	0	14019	912	32	3	265	3	SEC14L4	22	30887672	Missense_Mutation	SNP	C	TCGA-OR-A5LC-01A-11D-A29I-10	1231283	30887672	20416894	134	10200										
CARD10	29775	hgsc.bcm.edu	37	chr22	37915145	37915145	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0571428571428571	8	0.929330005145667	1.1585279547063	2.97907188353048	0.719086316714254	1	1	0	cacagcgcgtcctcctccgcCtcagaccccgagccggcccc	9	23	1	1	rs79861380		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	CARD10-662	NM_014550	exon1	c.G63A	p.E21E	CTCCGCCTCAGAC	.	11	11	0	0	C|0.935;T|0.065	0	0	0	0	0	T	37915145	C	T	37915145	2	4	50	1	0	0	0	0	0	0	0	1	2650	680	24	3		3	CARD10	22	37915145	Silent	SNP	C	TCGA-OR-A5LC-01A-11D-A29I-10	7027473	37915145	13389421	135	10201										
TCF20	6942	broad.mit.edu	37	chr22	42609400	42609400	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0571428571428571	8	0.929330005145667	1.1585279547063	2.97907188353048	0.719086316714254	1	1	0	tgccccaccattgctaggtgGcctttgagtggctgcaggat	13	11	0	1	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	TCF20-95	NM_181492	exon1	c.C1912A	p.P638T	TAGGTGGCCTTTG	.	94	5	112	1	.	1	1	0	0	0	T	42609400	G	T	42609400	3	4	50	1	0	0	0	0	1	0	0	0	15727	1203	42	3	4008	3	TCF20	22	42609400	Missense_Mutation	SNP	G	TCGA-OR-A5LC-01A-11D-A29I-10	4694255	42609400	8695166	136	10202										
PNPLA3	80339	bcgsc.ca	37	chr22	44322922	44322922	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0571428571428571	8	0.929330005145667	1.1585279547063	2.97907188353048	0.719086316714254	1	1	0	agttcctccgacagggtctcTgcaaatgcctcccggccaat	9	15	1	0	rs2076213	byfrequency	TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	PNPLA3-90	NM_025225	exon2	c.T295G	p.C99G	GGTCTCTGCAAAT	.	115	8	160	0	T|0.735;G|0.060;C|0.016;A|0.189	0	0	0	0	0	G	44322922	T	G	44322922	3	3	50	1	0	0	0	0	1	0	0	0	12195	1580	55	5	301	5	PNPLA3	22	44322922	Missense_Mutation	SNP	T	TCGA-OR-A5LC-01A-11D-A29I-10	1713522	44322922	6981644	137	10203										
PNPLA3	80339	bcgsc.ca	37	chr22	44322970	44322970	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0571428571428571	8	0.929330005145667	1.1585279547063	2.97907188353048	0.719086316714254	1	1	0	agctcatctccggcaaaataGgcatctctcttaccagagtg	8	12	4	1	rs2076212	byfrequency	TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	PNPLA3-90	NM_025225	exon2	c.G343T	p.G115C	AAAATAGGCATCT	.	175	10	215	0	G|0.868;T|0.132	0	0	0	0	0	T	44322970	G	T	44322970	3	4	50	1	0	0	0	0	1	0	0	0	12195	1000	35	3	349	3	PNPLA3	22	44322970	Missense_Mutation	SNP	G	TCGA-OR-A5LC-01A-11D-A29I-10	48	44322970	6981596	138	10204										
GLRA2	2742	bcgsc.ca	37	chrX	14627144	14627144	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0571428571428571	8	0.929330005145667	1.1585279547063	2.97907188353048	0.719086316714254	1	1	0	tgcattgaggtcaagtttcaTctggaacgccaaatgggata	11	7	3	1	rs2229963	byfrequency	TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	GLRA2-131	NM_002063	exon7	c.T747C	p.H249H	GTTTCATCTGGAA	.	158	7	123	0	0|0.003;C|0.269	0	0	0	0	0	C	14627144	T	C	14627144	2	2	50	1	0	0	0	0	0	0	0	1	6475	1432	50	4		4	GLRA2	23	14627144	Silent	SNP	T	TCGA-OR-A5LC-01A-11D-A29I-10		14627144	140643416	139	10205										
IL13RA1	3597	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	117925779	117925779	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0571428571428571	8	0.929330005145667	1.1585279547063	2.97907188353048	0.719086316714254	1	1	0	ccaaggaggaaaccgactctGtagtgctgatagaaaacctg	11	9	1	2	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	IL13RA1-554	NM_001560	exon11	c.G1246T	p.V416L	GACTCTGTAGTGC	.	141	48	106	1	.	12	12	0	0	0	T	117925779	G	T	117925779	3	4	50	1	0	0	0	0	1	0	0	0	7650	1377	48	3	1288	3	IL13RA1	23	117925779	Missense_Mutation	SNP	G	TCGA-OR-A5LC-01A-11D-A29I-10	103298635	117925779	37344781	140	10206										
BCORL1	63035	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	129155104	129155104	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0571428571428571	8	0.929330005145667	1.1585279547063	2.97907188353048	0.719086316714254	1	1	0	agtcccagtctccaggaaaaCgagccgacagccacgaggaa	11	13	1	0	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	BCORL1-294	NM_021946	exon4	c.C3586T	p.R1196X	GGAAAACGAGCCG	.	321	158	208	1	.	2	1	1	0	0	T	129155104	C	T	129155104	4	4	50	1	0	0	0	0	0	1	0	0	1388	528	19	1	3600	1	BCORL1	23	129155104	Nonsense_Mutation	SNP	C	TCGA-OR-A5LC-01A-11D-A29I-10	11229325	129155104	26115456	141	10207										
MAP7D3	79649	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	135313873	135313873	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0571428571428571	8	0.929330005145667	1.1585279547063	2.97907188353048	0.719086316714254	1	1	0	gctccccttgggaggtgcttCcaggctcccctctggggctg	14	15	1	0	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	MAP7D3-110	NM_024597	exon8	c.G1243A	p.E415K	GTGCTTCCAGGCT	.	183	90	148	1	.	1	0	1	0	0	T	135313873	C	T	135313873	3	4	50	1	0	0	0	0	1	0	0	0	9297	864	30	3	1431	3	MAP7D3	23	135313873	Missense_Mutation	SNP	C	TCGA-OR-A5LC-01A-11D-A29I-10	6158769	135313873	19956687	142	10208										
SRM	6723	hgsc.bcm.edu	37	chr1	11119899	11119899	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0560747663551402	6	0.929330005145667	1.31370851370851	1.8474025974026	1.0192566054635	1	1	0	agcagctgctccacctgcagTgacagggcctggccgggcca	14	15	0	1	rs7545802		TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	SRM-90	NM_003132	exon1	c.A102G	p.S34S	CTGCAGTGACAGG	.	4	4	0	0	T|0.001;C|0.999	1	0	1	0	0	C	11119899	T	C	11119899	2	2	51	1	0	0	0	0	0	0	0	1	15188	1683	59	4		4	SRM	1	11119899	Silent	SNP	T	TCGA-OR-A5LD-01A-11D-A29I-10		11119899	238130722	1	10209										
SLC9A1	6548	broad.mit.edu;bcgsc.ca	37	chr1	27436203	27436203	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0560747663551402	6	0.929330005145667	1.31370851370851	1.8474025974026	1.0192566054635	1	1	0	acgaagaagctcaggaagccGaggaagatgtccacgatgcc	13	10	1	2	novel		TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	SLC9A1-91	NM_003047	exon3	c.C879T	p.L293L	GAAGCCGAGGAAG	.	206	19	220	1	.	0	0	0	0	0	A	27436203	G	A	27436203	2	1	51	1	0	0	0	0	0	0	0	1	14744	1045	37	1		1	SLC9A1	1	27436203	Silent	SNP	G	TCGA-OR-A5LD-01A-11D-A29I-10	16316304	27436203	221814418	2	10210										
KANK4	163782	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	62713267	62713267	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0560747663551402	6	0.929330005145667	1.31370851370851	1.8474025974026	1.0192566054635	1	1	0	tggtcctgcagattgacatcTgcctggcagctaagcagcgc	12	12	1	2	novel		TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	KANK4-74	NM_181712	exon9	c.A2760T	p.A920A	GACATCTGCCTGG	.	140	44	178	3	.	0	0	0	0	0	A	62713267	T	A	62713267	2	1	51	1	0	0	0	0	0	0	0	1	8000	1567	55	5		5	KANK4	1	62713267	Silent	SNP	T	TCGA-OR-A5LD-01A-11D-A29I-10	35277064	62713267	186537354	3	10211										
CLCA4	22802	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	87033202	87033202	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0560747663551402	6	0.929330005145667	1.31370851370851	1.8474025974026	1.0192566054635	1	1	0	gtggggatggttcactttgaTagtactgccactattgtaaa	11	6	1	1	novel		TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	CLCA4-92	NM_012128	exon7	c.T1050C	p.D350D	CTTTGATAGTACT	.	142	49	147	0	.	0	0	0	0	0	C	87033202	T	C	87033202	2	2	51	1	0	0	0	0	0	0	0	1	3465	1403	49	4		4	CLCA4	1	87033202	Silent	SNP	T	TCGA-OR-A5LD-01A-11D-A29I-10	24319935	87033202	162217419	4	10212										
SLC25A24	29957	bcgsc.ca	37	chr1	108728484	108728484	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0560747663551402	6	0.929330005145667	1.31370851370851	1.8474025974026	1.0192566054635	1	1	0	tctaaactcttaaatgccaaTttcattttcttctcatggtc	3	10	5	0	rs862493	byfrequency	TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	SLC25A24-91	NM_013386	exon2	c.A276G	p.K92K	TGCCAATTTCATT	.	90	6	74	0	C|0.183;N|0.000	2	2	0	0	0	C	108728484	T	C	108728484	2	2	51	1	0	0	0	0	0	0	0	1	14522	1490	52	4		4	SLC25A24	1	108728484	Silent	SNP	T	TCGA-OR-A5LD-01A-11D-A29I-10	21695282	108728484	140522137	5	10213										
POGZ	23126	hgsc.bcm.edu;broad.mit.edu	37	chr1	151397436	151397437	+	Frame_Shift_Del	DEL	TG	TG	-													0.0560747663551402	6	0.929330005145667	1.31370851370851	1.8474025974026	1.0192566054635	1	1	0	ggtgatatcacttacacacaTgtgacctctcaaagcttcag					novel		TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10	TG	TG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	POGZ-93	NM_015100	exon8	c.1179_1180del	p.393_394del	CACACATGTGACC	.	259	23	295	0	.	0	0	0	0	0	-	151397437	TG	-	151397436	7	5	51	1	0	1	0	1	0	0	0	0	12215	1464	51	0	3100	0	POGZ	1	151397436	Frame_Shift_Del	DEL	TG	TCGA-OR-A5LD-01A-11D-A29I-10	42668952	151397436	97853185	6	10214										
TNR	7143	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	175293508	175293508	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0560747663551402	6	0.929330005145667	1.31370851370851	1.8474025974026	1.0192566054635	1	1	0	ttacctgactgtgcctggacTccccgtacttcccattgagg	9	14	0	2	novel		TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	TNR-324	NM_003285	exon22	c.A3941T	p.E1314V	CTGGACTCCCCGT	.	257	67	294	0	.	0	0	0	0	0	A	175293508	T	A	175293508	3	1	51	1	0	0	0	0	1	0	0	0	16375	1551	54	5	143	5	TNR	1	175293508	Missense_Mutation	SNP	T	TCGA-OR-A5LD-01A-11D-A29I-10	23896072	175293508	73957113	7	10215										
HMCN1	83872	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	186092320	186092320	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0560747663551402	6	0.929330005145667	1.31370851370851	1.8474025974026	1.0192566054635	1	1	0	ggcagccaatgtagcaggatCaagcagcacaagcaccaagc	11	12	1	0	novel		TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	HMCN1-113	NM_031935	exon81	c.C12467T	p.S4156L	CAGGATCAAGCAG	.	103	32	132	0	.	0	0	0	0	0	T	186092320	C	T	186092320	3	4	51	1	0	0	0	0	1	0	0	0	7241	838	29	3	12789	3	HMCN1	1	186092320	Missense_Mutation	SNP	C	TCGA-OR-A5LD-01A-11D-A29I-10	10798812	186092320	63158301	8	10216										
NFASC	23114	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	204923329	204923329	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0560747663551402	6	0.929330005145667	1.31370851370851	1.8474025974026	1.0192566054635	1	1	0	tccacagcttccactggacaCgaaacagcagattcttcaac	6	14	2	1	novel		TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	NFASC-139	NM_001005388	exon6	c.C229T	p.R77X	TGGACACGAAACA	.	120	12	144	0	.	0	0	0	0	0	T	204923329	C	T	204923329	4	4	51	1	0	0	0	0	0	1	0	0	10388	528	19	1	243	1	NFASC	1	204923329	Nonsense_Mutation	SNP	C	TCGA-OR-A5LD-01A-11D-A29I-10	18831009	204923329	44327292	9	10217										
CR2	1380	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	207643213	207643213	+	Nonsense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0560747663551402	6	0.929330005145667	1.31370851370851	1.8474025974026	1.0192566054635	1	1	0	gttgtacagttgatagtcagAagactgggacctggagtggc	15	6	1	3	novel		TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	CR2-232	NM_001006658	exon6	c.A991T	p.K331X	AGTCAGAAGACTG	.	156	22	163	2	.	0	0	0	0	0	T	207643213	A	T	207643213	4	4	51	1	0	0	0	0	0	1	0	0	3848	247	9	5	1013	5	CR2	1	207643213	Nonsense_Mutation	SNP	A	TCGA-OR-A5LD-01A-11D-A29I-10	2719884	207643213	41607408	10	10218										
TPO	7173	hgsc.bcm.edu	37	chr2	1481231	1481231	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0560747663551402	6	0.929330005145667	1.31370851370851	1.8474025974026	1.0192566054635	1	1	0	ggccggagacggccgcgccaGcgaggtcccctccctgacgg	16	17	0	2	rs2175977	byfrequency	TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	TPO-332	NM_175719	exon8	c.G1193C	p.S398T	GCGCCAGCGAGGT	.	11	9	2	0	G|0.301;C|0.699	0	0	0	0	0	C	1481231	G	C	1481231	3	2	51	1	0	0	0	0	1	0	0	0	16448	971	34	3	1219	3	TPO	2	1481231	Missense_Mutation	SNP	G	TCGA-OR-A5LD-01A-11D-A29I-10		1481231	241718142	11	10219										
C2orf71	388939	broad.mit.edu;bcgsc.ca	37	chr2	29296512	29296512	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0560747663551402	6	0.929330005145667	1.31370851370851	1.8474025974026	1.0192566054635	1	1	0	ccgggtctgggtggcctgatGgatgatgcacagaattgctt	15	8	1	3	novel		TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	C2orf71-91	NM_001029883	exon1	c.C616G	p.H206D	CCTGATGGATGAT	.	164	8	144	0	.	0	0	0	0	0	C	29296512	G	C	29296512	3	2	51	1	0	0	0	0	1	0	0	0	2197	1348	47	3	3258	3	C2orf71	2	29296512	Missense_Mutation	SNP	G	TCGA-OR-A5LD-01A-11D-A29I-10	27815281	29296512	213902861	12	10220										
PEX13	5194	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	61275821	61275821	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0560747663551402	6	0.929330005145667	1.31370851370851	1.8474025974026	1.0192566054635	1	1	0	ttggatgaacaggaagctgcCtttgaatctgtttttgttga	11	5	1	3	novel		TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	PEX13-91	NM_002618	exon4	c.C1128T	p.A376A	AGCTGCCTTTGAA	.	169	31	126	0	.	7	5	2	0	0	T	61275821	C	T	61275821	2	4	51	1	0	0	0	0	0	0	0	1	11770	668	24	3		3	PEX13	2	61275821	Silent	SNP	C	TCGA-OR-A5LD-01A-11D-A29I-10	31979309	61275821	181923552	13	10221										
GLI2	2736	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	121747796	121747796	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0560747663551402	6	0.929330005145667	1.31370851370851	1.8474025974026	1.0192566054635	1	1	0	cccagccgcctccgcaggacGcaggtggggccccggaccac	14	19	0	0	novel		TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	GLI2-954	NM_005270	exon13	c.G4306A	p.A1436T	CAGGACGCAGGTG	.	312	66	256	1	.	4	4	0	0	0	A	121747796	G	A	121747796	3	1	51	1	0	0	0	0	1	0	0	0	6458	1087	38	1	4356	1	GLI2	2	121747796	Missense_Mutation	SNP	G	TCGA-OR-A5LD-01A-11D-A29I-10	60471975	121747796	121451577	14	10222										
NXPH2	11249	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr2	139429091	139429091	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0560747663551402	6	0.929330005145667	1.31370851370851	1.8474025974026	1.0192566054635	1	1	0	cgccatggggccgggcttggGcaccggagactgtttaacaa	15	11	0	1	novel		TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	NXPH2-72	NM_007226	exon2	c.C196T	p.P66S	GCTTGGGCACCGG	.	115	8	76	0	.	0	0	0	0	0	A	139429091	G	A	139429091	3	1	51	1	0	0	0	0	1	0	0	0	10820	1203	42	3	602	3	NXPH2	2	139429091	Missense_Mutation	SNP	G	TCGA-OR-A5LD-01A-11D-A29I-10	17681295	139429091	103770282	15	10223										
MAP2	4133	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	210557459	210557459	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0560747663551402	6	0.929330005145667	1.31370851370851	1.8474025974026	1.0192566054635	1	1	0	cagagaagcaaagtaagcctGgtgaagaccttaaacatgct	10	8	0	3	novel		TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	MAP2-591	NM_002374	exon7	c.G565T	p.G189C	AAGCCTGGTGAAG	.	162	37	121	0	.	0	0	0	0	0	T	210557459	G	T	210557459	3	4	51	1	0	0	0	0	1	0	0	0	9263	1348	47	3	579	3	MAP2	2	210557459	Missense_Mutation	SNP	G	TCGA-OR-A5LD-01A-11D-A29I-10	71128368	210557459	32641914	16	10224										
ARPC2	10109	broad.mit.edu	37	chr2	219103504	219103505	+	Frame_Shift_Ins	INS	-	-	C													0.0560747663551402	6	0.929330005145667	1.31370851370851	1.8474025974026	1.0192566054635	1	1	0	tctgtctttgaaaaatacttINSccaattccaagaagagggca					novel		TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	ARPC2-91	NM_005731	exon5	c.386_387insC	p.F129fs	AATACTTCCAATT	.	349	8	263	0	.	0	0	0	0	0	C	219103505	-	C	219103504	7	5	51	1	0	1	1	0	0	0	0	0	972	1783	62	0	404	0	ARPC2	2	219103504	Frame_Shift_Ins	INS	-	TCGA-OR-A5LD-01A-11D-A29I-10	8546045	219103504	24095869	17	10225										
SP140	11262	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	231102964	231102964	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0560747663551402	6	0.929330005145667	1.31370851370851	1.8474025974026	1.0192566054635	1	1	0	ttagaaacctggtcccagtgAcaagagtgatgtattgtgta	11	6	0	4	novel		TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	SP140-90	NM_007237	exon3	c.A274T	p.T92S	CCAGTGACAAGAG	.	252	29	174	1	.	0	0	0	0	0	T	231102964	A	T	231102964	3	4	51	1	0	0	0	0	1	0	0	0	14997	275	10	5	284	5	SP140	2	231102964	Missense_Mutation	SNP	A	TCGA-OR-A5LD-01A-11D-A29I-10	11999460	231102964	12096409	18	10226										
ESPNL	339768	hgsc.bcm.edu	37	chr2	239009289	239009289	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0560747663551402	6	0.929330005145667	1.31370851370851	1.8474025974026	1.0192566054635	1	1	0	gggccaccccagcgcatgacGccgctgccacgggcagcctg	14	18	0	1	novel		TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	ESPNL-69	NM_194312	exon1	c.G229A	p.A77T	CATGACGCCGCTG	.	19	6	3	0	.	0	0	0	0	0	A	239009289	G	A	239009289	3	1	51	1	0	0	0	0	1	0	0	0	5268	1087	38	1	231	1	ESPNL	2	239009289	Missense_Mutation	SNP	G	TCGA-OR-A5LD-01A-11D-A29I-10	7906325	239009289	4190084	19	10227										
IQSEC1	9922	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	12977227	12977227	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0560747663551402	6	0.929330005145667	1.31370851370851	1.8474025974026	1.0192566054635	1	1	0	tggccaagtggctgtccaggGgcctggggggccggggccgc	21	12	0	0	novel		TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	IQSEC1-91	NM_014869	exon3	c.C1331G	p.P444R	TCCAGGGGCCTGG	.	54	12	56	0	.	0	0	0	0	0	C	12977227	G	C	12977227	3	2	51	1	0	0	0	0	1	0	0	0	7838	1232	43	3	2153	3	IQSEC1	3	12977227	Missense_Mutation	SNP	G	TCGA-OR-A5LD-01A-11D-A29I-10		12977227	185045203	20	10228										
LSM3	27258	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	14220380	14220380	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0560747663551402	6	0.929330005145667	1.31370851370851	1.8474025974026	1.0192566054635	1	1	0	catggcggacgacgtagaccAggtaagtgtattttaaggag	14	6	0	1	rs200658802		TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	LSM3-91	NM_014463	exon1	c.A20C	p.Q7P	TAGACCAGGTAAG	.	138	42	152	9	A|0.999;C|0.001	0	0	0	0	0	C	14220380	A	C	14220380	3	2	51	1	0	0	0	0	1	0	0	0	9084	202	7	5	22	5	LSM3	3	14220380	Missense_Mutation	SNP	A	TCGA-OR-A5LD-01A-11D-A29I-10	1243153	14220380	183802050	21	10229										
LZTFL1	54585	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	45879475	45879475	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0560747663551402	6	0.929330005145667	1.31370851370851	1.8474025974026	1.0192566054635	1	1	0	gttttgagtctcaagcctctCtttgaacgagcaaaacgcat	8	10	2	2	novel		TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	LZTFL1-90	NM_020347	exon2	c.G72C	p.K24N	GCCTCTCTTTGAA	.	60	16	59	0	.	0	0	0	0	0	G	45879475	C	G	45879475	3	3	51	1	0	0	0	0	1	0	0	0	9164	912	32	3	863	3	LZTFL1	3	45879475	Missense_Mutation	SNP	C	TCGA-OR-A5LD-01A-11D-A29I-10	31659095	45879475	152142955	22	10230										
PTH1R	5745	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	46943321	46943321	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0560747663551402	6	0.929330005145667	1.31370851370851	1.8474025974026	1.0192566054635	1	1	0	aagctgcgggagaccaacgcCggccggtgtgacacacggca	15	13	0	2	rs151330461	byfrequency;alternate_allele	TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	PTH1R-522	NM_001184744	exon12	c.C1182A	p.A394A	CAACGCCGGCCGG	.	201	52	236	0	C|1.000;T|0.000	0	0	0	0	0	A	46943321	C	A	46943321	2	1	51	1	0	0	0	0	0	0	0	1	12791	639	23	2		2	PTH1R	3	46943321	Silent	SNP	C	TCGA-OR-A5LD-01A-11D-A29I-10	1063846	46943321	151079109	23	10231										
SEMA5B	54437	hgsc.bcm.edu	37	chr3	122631896	122631896	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0560747663551402	6	0.929330005145667	1.31370851370851	1.8474025974026	1.0192566054635	1	1	0	tgctcccgctgcgcaggaggAcctccaccagggctgcggag	15	15	0	0	rs2276782	byfrequency	TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	SEMA5B-157	NM_001256347	exon18	c.T2681A	p.V894D	AGGAGGACCTCCA	.	4	4	0	0	T|0.412;A|0.588	0	0	0	0	0	T	122631896	A	T	122631896	3	4	51	1	0	0	0	0	1	0	0	0	14073	275	10	5	960	5	SEMA5B	3	122631896	Missense_Mutation	SNP	A	TCGA-OR-A5LD-01A-11D-A29I-10	75688575	122631896	75390534	24	10232										
MME	4311	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	154884739	154884739	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0560747663551402	6	0.929330005145667	1.31370851370851	1.8474025974026	1.0192566054635	1	1	0	cttctttagtgcccagcagtCcaactcattgaactatgggg	9	11	2	1	novel		TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	MME-516	NM_007287	exon18	c.C1709A	p.S570Y	AGCAGTCCAACTC	.	103	30	111	0	.	0	0	0	0	0	A	154884739	C	A	154884739	3	1	51	1	0	0	0	0	1	0	0	0	9673	855	30	3	1775	3	MME	3	154884739	Missense_Mutation	SNP	C	TCGA-OR-A5LD-01A-11D-A29I-10	32252843	154884739	43137691	25	10233										
AHSG	197	bcgsc.ca	37	chr3	186338564	186338564	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0560747663551402	6	0.929330005145667	1.31370851370851	1.8474025974026	1.0192566054635	1	1	0	accgggcgcactacgacctgCgccacaccttcatgggtgtg	12	15	1	0	rs35457250	byfrequency	TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	AHSG-90	NM_001622	exon7	c.C949T	p.R317C	GACCTGCGCCACA	.	168	6	172	2	C|0.993;T|0.007	0	0	0	0	0	T	186338564	C	T	186338564	3	4	51	1	0	0	0	0	1	0	0	0	420	768	27	1	975	1	AHSG	3	186338564	Missense_Mutation	SNP	C	TCGA-OR-A5LD-01A-11D-A29I-10	31453825	186338564	11683866	26	10234										
CRIPAK	285464	hgsc.bcm.edu	37	chr4	1388755	1388755	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0560747663551402	6	0.929330005145667	1.31370851370851	1.8474025974026	1.0192566054635	1	1	0	cccgcctgctcacacgtgccCatgcggagtgcccgcctgct	11	19	1	0	rs141481663	byfrequency	TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	CRIPAK-90	NM_175918	exon1	c.C456G	p.P152P	CGTGCCCATGCGG	.	62	10	19	0	C|0.960;G|0.040	6	3	3	0	0	G	1388755	C	G	1388755	2	3	51	1	0	0	0	0	0	0	0	1	3883	581	21	3		3	CRIPAK	4	1388755	Silent	SNP	C	TCGA-OR-A5LD-01A-11D-A29I-10		1388755	189765521	27	10235										
STIM2	57620	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	26997088	26997088	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0560747663551402	6	0.929330005145667	1.31370851370851	1.8474025974026	1.0192566054635	1	1	0	gaagaattttagagacaacaAtgtcaaaggaacgacacttc	8	7	1	2	novel		TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	STIM2-91	NM_001169118	exon4	c.A485G	p.N162S	ACAACAATGTCAA	.	67	16	95	0	.	3	3	0	0	0	G	26997088	A	G	26997088	3	3	51	1	0	0	0	0	1	0	0	0	15321	101	4	4	499	4	STIM2	4	26997088	Missense_Mutation	SNP	A	TCGA-OR-A5LD-01A-11D-A29I-10	25608333	26997088	164157188	28	10236										
DSPP	1834	bcgsc.ca	37	chr4	88536550	88536550	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0560747663551402	6	0.929330005145667	1.31370851370851	1.8474025974026	1.0192566054635	1	1	0	agtgatagcagcaacagcagTgacagcagtgatagcagcaa	12	8	0	3	rs145589857		TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	DSPP-90	NM_014208	exon5	c.T2736C	p.S912S	CAGCAGTGACAGC	.	564	17	560	5	.	0	0	0	0	0	C	88536550	T	C	88536550	2	2	51	1	0	0	0	0	0	0	0	1	4793	1693	59	4		4	DSPP	4	88536550	Silent	SNP	T	TCGA-OR-A5LD-01A-11D-A29I-10	61539462	88536550	102617726	29	10237										
FRG1	2483	bcgsc.ca	37	chr4	190874269	190874269	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0560747663551402	6	0.929330005145667	1.31370851370851	1.8474025974026	1.0192566054635	1	1	0	cagtttacggctgtcaaattAtctgattccaggtgagctta	9	8	2	2	novel		TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	FRG1-90	NM_004477	exon4	c.A306T	p.L102F	CAAATTATCTGAT	.	337	13	463	6	.	0	0	0	0	0	T	190874269	A	T	190874269	3	4	51	1	0	0	0	0	1	0	0	0	6065	446	16	5	320	5	FRG1	4	190874269	Missense_Mutation	SNP	A	TCGA-OR-A5LD-01A-11D-A29I-10	102337719	190874269	280007	30	10238										
SLCO6A1	133482	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	101748695	101748695	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0560747663551402	6	0.929330005145667	1.31370851370851	1.8474025974026	1.0192566054635	1	1	0	aattataaaaaataattaccTttttttggttttgtgcttta	4	3	0	0	novel		TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	SLCO6A1-96	NM_173488	exon9	c.A1625C	p.K542T	ATTACCTTTTTTT	.	39	18	51	0	.	0	0	0	0	0	G	101748695	T	G	101748695	3	3	51	1	0	0	0	0	1	0	0	0	14767	1623	56	5	554	5	SLCO6A1	5	101748695	Missense_Mutation	SNP	T	TCGA-OR-A5LD-01A-11D-A29I-10		101748695	79166565	31	10239										
DOK3	79930	bcgsc.ca	37	chr5	176936590	176936590	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0560747663551402	6	0.929330005145667	1.31370851370851	1.8474025974026	1.0192566054635	1	1	0	tcaagacctggggagactgaTgacaggctggacgggaactc	15	9	1	4	rs2112181	byfrequency	TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	DOK3-226	NM_024872	exon2	c.A120G	p.S40S	GACTGATGACAGG	.	101	5	94	0	T|0.892;C|0.108	0	0	0	0	0	C	176936590	T	C	176936590	2	2	51	1	0	0	0	0	0	0	0	1	4709	1451	51	4		4	DOK3	5	176936590	Silent	SNP	T	TCGA-OR-A5LD-01A-11D-A29I-10	75187895	176936590	3978670	32	10240										
BPHL	670	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr6	3118992	3118992	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0560747663551402	6	0.929330005145667	1.31370851370851	1.8474025974026	1.0192566054635	1	1	0	accatggtggctgtgctgggCggccggggcgtgttgcgcct	19	11	0	0	novel		TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	BPHL-90	NM_004332	exon1	c.C18T	p.G6G	GCTGGGCGGCCGG	.	57	11	30	0	.	0	0	0	0	0	T	3118992	C	T	3118992	2	4	51	1	0	0	0	0	0	0	0	1	1492	755	27	1		1	BPHL	6	3118992	Silent	SNP	C	TCGA-OR-A5LD-01A-11D-A29I-10		3118992	167996075	33	10241										
EYS	346007	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	65655687	65655687	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0560747663551402	6	0.929330005145667	1.31370851370851	1.8474025974026	1.0192566054635	1	1	0	ctaaaaatatgttactcaccGatagcttttgtaaaggtcag	7	7	2	0	novel		TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	EYS-660	NM_001142800	exon15	c.C2380T	p.R794X	CTCACCGATAGCT	.	91	24	90	0	.	0	0	0	0	0	A	65655687	G	A	65655687	4	1	51	1	0	0	0	0	0	1	0	0	5345	1072	37	1	7015	1	EYS	6	65655687	Nonsense_Mutation	SNP	G	TCGA-OR-A5LD-01A-11D-A29I-10	62536695	65655687	105459380	34	10242										
SNX14	57231	broad.mit.edu	37	chr6	86227557	86227557	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0560747663551402	6	0.929330005145667	1.31370851370851	1.8474025974026	1.0192566054635	1	1	0	tggagactcacaagaattaaTgaaattcatgataaaaggtt	8	4	2	4	novel		TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	SNX14-226	NM_153816	exon23	c.A2185G	p.I729V	AATTAATGAAATT	.	54	3	80	0	.	3	3	0	0	0	C	86227557	T	C	86227557	3	2	51	1	0	0	0	0	1	0	0	0	14920	1464	51	4	683	4	SNX14	6	86227557	Missense_Mutation	SNP	T	TCGA-OR-A5LD-01A-11D-A29I-10	20571870	86227557	84887510	35	10243										
C6orf58	352999	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	127899852	127899852	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0560747663551402	6	0.929330005145667	1.31370851370851	1.8474025974026	1.0192566054635	1	1	0	cagattagctgatccaacccGaaggacaaactgtggctatg	10	10	0	2	novel		TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	C6orf58-90	NM_001010905	exon2	c.G323A	p.R108Q	CAACCCGAAGGAC	.	153	51	133	1	.	0	0	0	0	0	A	127899852	G	A	127899852	3	1	51	1	0	0	0	0	1	0	0	0	2373	1058	37	1	329	1	C6orf58	6	127899852	Missense_Mutation	SNP	G	TCGA-OR-A5LD-01A-11D-A29I-10	41672295	127899852	43215215	36	10244										
FGFR1OP	11116	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	167436000	167436000	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0560747663551402	6	0.929330005145667	1.31370851370851	1.8474025974026	1.0192566054635	1	1	0	ccatgaaacaaaaattggatCttttctaagcaacagaactt	5	8	2	2	novel		TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	FGFR1OP-683	NM_007045	exon8	c.C683G	p.S228C	TTGGATCTTTTCT	.	79	18	87	0	.	8	8	0	0	0	G	167436000	C	G	167436000	3	3	51	1	0	0	0	0	1	0	0	0	5883	913	32	3	713	3	FGFR1OP	6	167436000	Missense_Mutation	SNP	C	TCGA-OR-A5LD-01A-11D-A29I-10	39536148	167436000	3679067	37	10245										
TNRC18	84629	hgsc.bcm.edu	37	chr7	5372406	5372406	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0560747663551402	6	0.929330005145667	1.31370851370851	1.8474025974026	1.0192566054635	1	1	0	tgcaggaagatgcgctcgctGcggcgccgcgtccacaggtc	15	14	0	1	rs13238738	byfrequency	TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	TNRC18-46	NM_001080495	exon19	c.C5994A	p.R1998R	CTCGCTGCGGCGC	.	9	7	0	0	G|0.411;T|0.589	0	0	0	0	0	T	5372406	G	T	5372406	2	4	51	1	0	0	0	0	0	0	0	1	16376	1306	46	3		3	TNRC18	7	5372406	Silent	SNP	G	TCGA-OR-A5LD-01A-11D-A29I-10		5372406	153766257	38	10246										
USP42	84132	hgsc.bcm.edu	37	chr7	6193521	6193521	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0560747663551402	6	0.929330005145667	1.31370851370851	1.8474025974026	1.0192566054635	1	1	0	caagaaggctccgccgccccGcgatcccggcacccccgcta	10	21	0	1	rs61729726	byfrequency	TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	USP42-659	NM_032172	exon15	c.G2336C	p.R779P	CGCCCCGCGATCC	.	23	16	0	0	G|0.456;C|0.544	0	0	0	0	0	C	6193521	G	C	6193521	3	2	51	1	0	0	0	0	1	0	0	0	17111	1087	38	2		2	USP42	7	6193521	Missense_Mutation	SNP	G	TCGA-OR-A5LD-01A-11D-A29I-10	821115	6193521	152945142	39	10247										
HDAC9	9734	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	18705997	18705997	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0560747663551402	6	0.929330005145667	1.31370851370851	1.8474025974026	1.0192566054635	1	1	0	tgtgtggatgacacactgggAcaagttggggctgtgaaggt	17	5	0	2	novel		TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	HDAC9-227	NM_178425	exon11	c.A1629G	p.G543G	ACTGGGACAAGTT	.	185	38	171	0	.	0	0	0	0	0	G	18705997	A	G	18705997	2	3	51	1	0	0	0	0	0	0	0	1	7035	262	10	4		4	HDAC9	7	18705997	Silent	SNP	A	TCGA-OR-A5LD-01A-11D-A29I-10	12512476	18705997	140432666	40	10248										
OR2F1	26211	bcgsc.ca	37	chr7	143657801	143657801	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0560747663551402	6	0.929330005145667	1.31370851370851	1.8474025974026	1.0192566054635	1	1	0	acgtgtgcctctcacctcacAgtggttgccctgtgctatgg	11	13	2	0	rs2072166	byfrequency	TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	OR2F1-71	NM_012369	exon1	c.A738G	p.T246T	CCTCACAGTGGTT	.	143	5	225	2	A|0.568;G|0.432	0	0	0	0	0	G	143657801	A	G	143657801	2	3	51	1	0	0	0	0	0	0	0	1	11025	175	7	4		4	OR2F1	7	143657801	Silent	SNP	A	TCGA-OR-A5LD-01A-11D-A29I-10	124951804	143657801	15480862	41	10249										
PCM1	5108	ucsc.edu;bcgsc.ca	37	chr8	17817553	17817553	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0560747663551402	6	0.929330005145667	1.31370851370851	1.8474025974026	1.0192566054635	1	1	0	cagctcaaggagttatctctGccagtgcatcaaatttggat	9	9	3	0	rs17635381	byfrequency	TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	PCM1-742	NM_006197	exon14	c.G2071T	p.A691S	ATCTCTGCCAGTG	.	108	25	136	0	G|0.834;N|0.000	1	1	0	0	0	T	17817553	G	T	17817553	3	4	51	1	0	0	0	0	1	0	0	0	11613	1319	46	3	2117	3	PCM1	8	17817553	Missense_Mutation	SNP	G	TCGA-OR-A5LD-01A-11D-A29I-10		17817553	128546469	42	10250										
ZFAT	57623	broad.mit.edu;bcgsc.ca	37	chr8	135615137	135615137	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0560747663551402	6	0.929330005145667	1.31370851370851	1.8474025974026	1.0192566054635	1	1	0	aacttgaagaccttgttgcaGtattcacaagtgaagatttt	8	6	1	4	novel		TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	ZFAT-90	NM_020863	exon6	c.C825A	p.Y275X	GTTGCAGTATTCA	.	311	13	198	0	.	0	0	0	0	0	T	135615137	G	T	135615137	4	4	51	1	0	0	0	0	0	1	0	0	17669	1024	36	3	2950	3	ZFAT	8	135615137	Nonsense_Mutation	SNP	G	TCGA-OR-A5LD-01A-11D-A29I-10	117797584	135615137	10748885	43	10251										
PLEC	5339	hgsc.bcm.edu	37	chr8	145001784	145001784	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0560747663551402	6	0.929330005145667	1.31370851370851	1.8474025974026	1.0192566054635	1	1	0	agcctgccagcgctcaagcaActgggcgacccgctcccgcc	11	19	1	0	rs3135109	byfrequency	TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	PLEC-141	NM_201380	exon27	c.T3961C	p.L1321L	CAAGCAACTGGGC	.	29	10	1	0	G|0.246;A|0.754	0	0	0	0	0	G	145001784	A	G	145001784	2	3	51	1	0	0	0	0	0	0	0	1	12081	40	2	4		4	PLEC	8	145001784	Silent	SNP	A	TCGA-OR-A5LD-01A-11D-A29I-10	9386647	145001784	1362238	44	10252										
TTC16	158248	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr9	130492920	130492920	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0560747663551402	6	0.929330005145667	1.31370851370851	1.8474025974026	1.0192566054635	1	1	0	gcacccccttcctagtcaggAccacaggcacctcagagact	8	17	2	1	novel		TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	TTC16-90	NM_144965	exon14	c.A1858G	p.T620A	GTCAGGACCACAG	.	67	23	62	0	.	0	0	0	0	0	G	130492920	A	G	130492920	3	3	51	1	0	0	0	0	1	0	0	0	16721	275	10	4	1912	4	TTC16	9	130492920	Missense_Mutation	SNP	A	TCGA-OR-A5LD-01A-11D-A29I-10		130492920	10720511	45	10253										
TTC16	158248	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr9	130493619	130493619	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0560747663551402	6	0.929330005145667	1.31370851370851	1.8474025974026	1.0192566054635	1	1	0	gcaaggccgagtccacctggGgacccagcccaagtctcagc	12	16	1	0	novel		TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	TTC16-90	NM_144965	exon14	c.G2557A	p.G853R	ACCTGGGGACCCA	.	215	19	185	0	.	0	0	0	0	0	A	130493619	G	A	130493619	3	1	51	1	0	0	0	0	1	0	0	0	16721	1233	43	3	2611	3	TTC16	9	130493619	Missense_Mutation	SNP	G	TCGA-OR-A5LD-01A-11D-A29I-10	699	130493619	10719812	46	10254										
WDR34	89891	hgsc.bcm.edu	37	chr9	131418828	131418828	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0560747663551402	6	0.929330005145667	1.31370851370851	1.8474025974026	1.0192566054635	1	1	0	ccgcgccctcaccgtctcccAgcggatgccctggacggccc	11	21	2	0	rs4837292		TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	WDR34-92	NM_052844	exon1	c.T178G	p.W60G	TCTCCCAGCGGAT	.	6	6	0	0	A|0.006;C|0.994	0	0	0	0	0	C	131418828	A	C	131418828	3	2	51	1	0	0	0	0	1	0	0	0	17326	188	7	5	1468	5	WDR34	9	131418828	Missense_Mutation	SNP	A	TCGA-OR-A5LD-01A-11D-A29I-10	925209	131418828	9794603	47	10255										
SLC2A6	11182	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr9	136339193	136339193	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0560747663551402	6	0.929330005145667	1.31370851370851	1.8474025974026	1.0192566054635	1	1	0	cgcacggccccaacgatggcTgcgtcgtccttggggggcta	15	14	0	0	novel		TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	SLC2A6-90	NM_017585	exon7	c.A945G	p.A315A	GATGGCTGCGTCG	.	112	7	102	0	.	0	0	0	0	0	C	136339193	T	C	136339193	2	2	51	1	0	0	0	0	0	0	0	1	14584	1567	55	4		4	SLC2A6	9	136339193	Silent	SNP	T	TCGA-OR-A5LD-01A-11D-A29I-10	4920365	136339193	4874238	48	10256										
TPRN	286262	hgsc.bcm.edu;bcgsc.ca	37	chr9	140086594	140086594	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0560747663551402	6	0.929330005145667	1.31370851370851	1.8474025974026	1.0192566054635	1	1	0	agggctggctcgctgcggaaGtccgagaggtcattctgact	15	10	2	2	novel		TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	TPRN-90	NM_001128228	exon4	c.C2106A	p.D702E	GCGGAAGTCCGAG	.	55	4	81	0	.	9	9	0	0	0	T	140086594	G	T	140086594	3	4	51	1	0	0	0	0	1	0	0	0	16459	1020	36	3	33	3	TPRN	9	140086594	Missense_Mutation	SNP	G	TCGA-OR-A5LD-01A-11D-A29I-10	3747401	140086594	1126837	49	10257										
TACC2	10579	broad.mit.edu;bcgsc.ca	37	chr10	123842918	123842918	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0560747663551402	6	0.929330005145667	1.31370851370851	1.8474025974026	1.0192566054635	1	1	0	gcgccgcctcagtatttaacAgatgacttggaattcctcag	9	11	2	2	novel		TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	TACC2-296	NM_206862	exon4	c.A903T	p.T301T	TTTAACAGATGAC	.	184	11	135	1	.	0	0	0	0	0	T	123842918	A	T	123842918	2	4	51	1	0	0	0	0	0	0	0	1	15539	175	7	5		5	TACC2	10	123842918	Silent	SNP	A	TCGA-OR-A5LD-01A-11D-A29I-10		123842918	11691829	50	10258										
KNDC1	85442	hgsc.bcm.edu;broad.mit.edu	37	chr10	135015372	135015372	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0560747663551402	6	0.929330005145667	1.31370851370851	1.8474025974026	1.0192566054635	1	1	0	gacctggggcggcagcaggcGgacggggccctgcccgacgc	19	15	0	0	novel		TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	KNDC1-229	NM_152643	exon17	c.G3357T	p.A1119A	GCAGGCGGACGGG	.	69	5	23	0	.	0	0	0	0	0	T	135015372	G	T	135015372	2	4	51	1	0	0	0	0	0	0	0	1	8447	1103	39	2		2	KNDC1	10	135015372	Silent	SNP	G	TCGA-OR-A5LD-01A-11D-A29I-10	11172454	135015372	519375	51	10259										
OR52I2	143502	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr11	4608887	4608887	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0560747663551402	6	0.929330005145667	1.31370851370851	1.8474025974026	1.0192566054635	1	1	0	gggggttatggctttgtactAtctacctgggatggcatcca	13	8	1	0	novel		TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	OR52I2-91	NM_001005170	exon1	c.A845C	p.Y282S	TGTACTATCTACC	.	222	50	179	0	.	0	0	0	0	0	C	4608887	A	C	4608887	3	2	51	1	0	0	0	0	1	0	0	0	11150	449	16	5	847	5	OR52I2	11	4608887	Missense_Mutation	SNP	A	TCGA-OR-A5LD-01A-11D-A29I-10		4608887	130397629	52	10260										
NLRP10	338322	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	7982583	7982583	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0560747663551402	6	0.929330005145667	1.31370851370851	1.8474025974026	1.0192566054635	1	1	0	cggcctgggtacagagtaccGgtggcccagtccaacaccat	12	14	0	1	rs138681119	byfrequency	TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	NLRP10-209	NM_176821	exon2	c.C576T	p.T192T	AGTACCGGTGGCC	.	140	25	75	0	G|1.000;A|0.000	0	0	0	0	0	A	7982583	G	A	7982583	2	1	51	1	0	0	0	0	0	0	0	1	10501	1103	39	1		1	NLRP10	11	7982583	Silent	SNP	G	TCGA-OR-A5LD-01A-11D-A29I-10	3373696	7982583	127023933	53	10261										
CAPRIN1	4076	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr11	34097794	34097795	+	Frame_Shift_Del	DEL	AA	AA	-													0.0560747663551402	6	0.929330005145667	1.31370851370851	1.8474025974026	1.0192566054635	1	1	0	gttttgcagattcagaaaacAataaagaagacagcacgtcg					novel		TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10	AA	AA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	CAPRIN1-91	NM_203364	exon5	c.378_379del	p.126_127del	GAAAACAATAAAG	.	50	13	70	0	.	0	0	0	0	0	-	34097795	AA	-	34097794	7	5	51	1	0	1	0	1	0	0	0	0	2641	117	5	0	392	0	CAPRIN1	11	34097794	Frame_Shift_Del	DEL	AA	TCGA-OR-A5LD-01A-11D-A29I-10	26115211	34097794	100908722	54	10262										
DGKZ	8525	broad.mit.edu;bcgsc.ca	37	chr11	46389253	46389253	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.0560747663551402	6	0.929330005145667	1.31370851370851	1.8474025974026	1.0192566054635	1	1	0	tcgagaccaacgtgtccgggGacttctgctacgttggggag	15	10	1	1	novel		TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	DGKZ-676	NM_001105540	exon4	c.G889C	p.D297H	TCCGGGGACTTCT	.	143	8	118	2	.	0	0	0	0	0	C	46389253	G	C	46389253	3	2	51	1	0	0	0	0	1	0	0	0	4485	1174	41	3	1343	3	DGKZ	11	46389253	Missense_Mutation	SNP	G	TCGA-OR-A5LD-01A-11D-A29I-10	12291459	46389253	88617263	55	10263										
CDC42BPG	55561	bcgsc.ca	37	chr11	64601933	64601933	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0560747663551402	6	0.929330005145667	1.31370851370851	1.8474025974026	1.0192566054635	1	1	0	agctgggcctcctgcacctgTgtcagccgctcctgcaggcc	12	17	1	0	rs7933683	byfrequency	TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	CDC42BPG-528	NM_017525	exon19	c.A2292G	p.T764T	CACCTGTGTCAGC	.	67	4	42	0	T|0.722;C|0.278	0	0	0	0	0	C	64601933	T	C	64601933	2	2	51	1	0	0	0	0	0	0	0	1	3080	1683	59	4		4	CDC42BPG	11	64601933	Silent	SNP	T	TCGA-OR-A5LD-01A-11D-A29I-10	18212680	64601933	70404583	56	10264										
TM7SF2	7108	hgsc.bcm.edu	37	chr11	64880090	64880090	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0560747663551402	6	0.929330005145667	1.31370851370851	1.8474025974026	1.0192566054635	1	1	0	ggtccacccgcgtccctgccGgggctggaggtgctgtggag	18	13	0	0	rs4930284		TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	TM7SF2-91	NM_003273	exon2	c.G156C	p.P52P	CCTGCCGGGGCTG	.	8	8	0	0	G|0.005;C|0.995	0	0	0	0	0	C	64880090	G	C	64880090	2	2	51	1	0	0	0	0	0	0	0	1	16011	1103	39	2		2	TM7SF2	11	64880090	Silent	SNP	G	TCGA-OR-A5LD-01A-11D-A29I-10	278157	64880090	70126426	57	10265										
FRMD8	83786	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	65167232	65167232	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0560747663551402	6	0.929330005145667	1.31370851370851	1.8474025974026	1.0192566054635	1	1	0	ccttcttccacggtgaggttGacaagccggcccaaggcttt	11	13	1	2	rs139960411	byfrequency;alternate_allele	TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	FRMD8-227	NM_031904	exon8	c.G829A	p.D277N	GAGGTTGACAAGC	.	323	42	87	3	G|0.999;C|0.001	3	3	0	0	0	A	65167232	G	A	65167232	3	1	51	1	0	0	0	0	1	0	0	0	6075	1290	45	3	855	3	FRMD8	11	65167232	Missense_Mutation	SNP	G	TCGA-OR-A5LD-01A-11D-A29I-10	287142	65167232	69839284	58	10266										
FRMD8	83786	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	65167323	65167323	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0560747663551402	6	0.929330005145667	1.31370851370851	1.8474025974026	1.0192566054635	1	1	0	cgtgcacgtcatcgatagcaGagagaaggtactgcccccag	12	12	1	2	novel		TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	FRMD8-227	NM_031904	exon8	c.G920C	p.R307T	ATAGCAGAGAGAA	.	247	40	54	0	.	0	0	0	0	0	C	65167323	G	C	65167323	3	2	51	1	0	0	0	0	1	0	0	0	6075	942	33	3	946	3	FRMD8	11	65167323	Missense_Mutation	SNP	G	TCGA-OR-A5LD-01A-11D-A29I-10	91	65167323	69839193	59	10267										
TRPC6	7225	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	101375498	101375498	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0560747663551402	6	0.929330005145667	1.31370851370851	1.8474025974026	1.0192566054635	1	1	0	ctcacggagaactgtctgccGccggtgagccagtctgttgt	13	12	3	2	novel		TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	TRPC6-93	NM_004621	exon2	c.C202T	p.R68W	TCTGCCGCCGGTG	.	150	25	151	1	.	0	0	0	0	0	A	101375498	G	A	101375498	3	1	51	1	0	0	0	0	1	0	0	0	16621	1086	38	1	2641	1	TRPC6	11	101375498	Missense_Mutation	SNP	G	TCGA-OR-A5LD-01A-11D-A29I-10	36208175	101375498	33631018	60	10268										
ESAM	90952	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	124631990	124631990	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0560747663551402	6	0.929330005145667	1.31370851370851	1.8474025974026	1.0192566054635	1	1	0	gtttcactcaccgagggcacTcagccccaggaacaaaaacc	8	15	3	0	novel		TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	ESAM-90	NM_138961	exon1	c.A61G	p.S21G	GGGCACTCAGCCC	.	166	49	155	1	.	0	0	0	0	0	C	124631990	T	C	124631990	3	2	51	1	0	0	0	0	1	0	0	0	5260	1551	54	4	1139	4	ESAM	11	124631990	Missense_Mutation	SNP	T	TCGA-OR-A5LD-01A-11D-A29I-10	23256492	124631990	10374526	61	10269										
GLB1L2	89944	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	134240910	134240910	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0560747663551402	6	0.929330005145667	1.31370851370851	1.8474025974026	1.0192566054635	1	1	0	ttctgtacgcagccaatcaaGtctgaaaagcccatcaacat	6	12	4	1	novel		TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	GLB1L2-25	NM_138342	exon13	c.G1224C	p.K408N	AATCAAGTCTGAA	.	97	18	91	0	.	0	0	0	0	0	C	134240910	G	C	134240910	3	2	51	1	0	0	0	0	1	0	0	0	6449	1020	36	3	1274	3	GLB1L2	11	134240910	Missense_Mutation	SNP	G	TCGA-OR-A5LD-01A-11D-A29I-10	9608920	134240910	765606	62	10270										
SLC2A13	114134	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	40441854	40441854	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0560747663551402	6	0.929330005145667	1.31370851370851	1.8474025974026	1.0192566054635	1	1	0	gtaaaaagtatttacaaaccTccatccatccttctggagat	5	10	1	1	novel		TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	SLC2A13-515	NM_052885	exon2	c.A715T	p.R239W	CAAACCTCCATCC	.	62	9	47	0	.	0	0	0	0	0	A	40441854	T	A	40441854	3	1	51	1	0	0	0	0	1	0	0	0	14577	1565	54	5	1267	5	SLC2A13	12	40441854	Missense_Mutation	SNP	T	TCGA-OR-A5LD-01A-11D-A29I-10		40441854	93410041	63	10271										
MCRS1	10445	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	49957272	49957272	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0560747663551402	6	0.929330005145667	1.31370851370851	1.8474025974026	1.0192566054635	1	1	0	gccttgctaaacagggccttGctctggatggctgcaatagc	12	11	1	0	novel		TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	MCRS1-289	NM_001012300	exon6	c.C654T	p.S218S	GGCCTTGCTCTGG	.	46	14	56	0	.	3	2	1	0	0	A	49957272	G	A	49957272	2	1	51	1	0	0	0	0	0	0	0	1	9427	1310	46	3		3	MCRS1	12	49957272	Silent	SNP	G	TCGA-OR-A5LD-01A-11D-A29I-10	9515418	49957272	83894623	64	10272										
ALX1	8092	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	85677521	85677521	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0560747663551402	6	0.929330005145667	1.31370851370851	1.8474025974026	1.0192566054635	1	1	0	tgtatccagcagtaagaaacGgaggcaccgaaccaccttca	9	12	1	1	novel		TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	ALX1-24	NM_006982	exon2	c.G398A	p.R133Q	AGAAACGGAGGCA	.	210	41	176	0	.	0	0	0	0	0	A	85677521	G	A	85677521	3	1	51	1	0	0	0	0	1	0	0	0	556	1116	39	1	404	1	ALX1	12	85677521	Missense_Mutation	SNP	G	TCGA-OR-A5LD-01A-11D-A29I-10	35720249	85677521	48174374	65	10273										
AACS	65985	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	125561105	125561105	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0560747663551402	6	0.929330005145667	1.31370851370851	1.8474025974026	1.0192566054635	1	1	0	ggcagtcggctcaactatgcAgaaaacctcctgcggcacaa	10	13	1	1	novel		TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	AACS-92	NM_023928	exon3	c.A306C	p.A102A	CTATGCAGAAAAC	.	158	36	135	0	.	0	0	0	0	0	C	125561105	A	C	125561105	2	2	51	1	0	0	0	0	0	0	0	1	9	175	7	5		5	AACS	12	125561105	Silent	SNP	A	TCGA-OR-A5LD-01A-11D-A29I-10	39883584	125561105	8290790	66	10274										
NOC4L	79050	broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr12	132633391	132633391	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0560747663551402	6	0.929330005145667	1.31370851370851	1.8474025974026	1.0192566054635	1	1	0	gacgccatcctgccgcagctGgcgcagcccacgctcatgat	11	17	1	1	novel		TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	NOC4L-90	NM_024078	exon9	c.G852C	p.L284L	GCAGCTGGCGCAG	.	87	19	101	1	.	4	4	0	0	0	C	132633391	G	C	132633391	2	2	51	1	0	0	0	0	0	0	0	1	10544	1335	47	3		3	NOC4L	12	132633391	Silent	SNP	G	TCGA-OR-A5LD-01A-11D-A29I-10	7072286	132633391	1218504	67	10275										
TPTE2	93492	bcgsc.ca	37	chr13	20006685	20006685	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0560747663551402	6	0.929330005145667	1.31370851370851	1.8474025974026	1.0192566054635	1	1	0	gagattccagttgtagagatGtttcacttgtgcaaaatatc	9	6	1	2	rs192298083	alternate_allele	TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	TPTE2-92	NM_199254	exon17	c.C1150A	p.H384N	AGAGATGTTTCAC	.	153	7	228	0	G|0.999;A|0.001	0	0	0	0	0	T	20006685	G	T	20006685	3	4	51	1	0	0	0	0	1	0	0	0	16469	1377	48	3	438	3	TPTE2	13	20006685	Missense_Mutation	SNP	G	TCGA-OR-A5LD-01A-11D-A29I-10		20006685	95163193	68	10276										
ARL11	115761	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr13	50204849	50204849	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0560747663551402	6	0.929330005145667	1.31370851370851	1.8474025974026	1.0192566054635	1	1	0	tatcctcgtgtacgtgctggAcagcacagatgaagcccgct	11	12	0	2	novel		TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	ARL11-90	NM_138450	exon2	c.A266G	p.D89G	TGCTGGACAGCAC	.	98	11	144	0	.	0	0	0	0	0	G	50204849	A	G	50204849	3	3	51	1	0	0	0	0	1	0	0	0	927	275	10	4	268	4	ARL11	13	50204849	Missense_Mutation	SNP	A	TCGA-OR-A5LD-01A-11D-A29I-10	30198164	50204849	64965029	69	10277			1	51		2	2	15	N	G_A	4.838897e-05
ARL11	115761	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr13	50204863	50204863	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0560747663551402	6	0.929330005145667	1.31370851370851	1.8474025974026	1.0192566054635	1	1	0	tgctggacagcacagatgaaGcccgcttacccgagtcggcg	13	13	0	2	novel		TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	ARL11-90	NM_138450	exon2	c.G280T	p.A94S	GATGAAGCCCGCT	.	92	11	132	0	.	0	0	0	0	0	T	50204863	G	T	50204863	3	4	51	1	0	0	0	0	1	0	0	0	927	971	34	3	282	3	ARL11	13	50204863	Missense_Mutation	SNP	G	TCGA-OR-A5LD-01A-11D-A29I-10	14	50204863	64965015	70	10278			1	51		2	2	15	N	G_A	4.838897e-05
GZMB	3002	bcgsc.ca	37	chr14	25101618	25101618	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0560747663551402	6	0.929330005145667	1.31370851370851	1.8474025974026	1.0192566054635	1	1	0	cagggataaactgctgggtcGgctcctgttctttgatattg	12	8	1	1	rs52812266	alternate_allele	TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	GZMB-514	NM_004131	exon3	c.C251T	p.P84L	TGGGTCGGCTCCT	.	166	16	141	2	.	0	0	0	0	0	A	25101618	G	A	25101618	3	1	51	1	0	0	0	0	1	0	0	0	6937	1116	39	1	504	1	GZMB	14	25101618	Missense_Mutation	SNP	G	TCGA-OR-A5LD-01A-11D-A29I-10		25101618	82247922	71	10279										
SLC24A4	123041	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr14	92920319	92920319	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0560747663551402	6	0.929330005145667	1.31370851370851	1.8474025974026	1.0192566054635	1	1	0	gagctccagccctcccaagtTcaccttccctgaagcaggct	8	17	1	1	novel		TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	SLC24A4-93	NM_153646	exon11	c.T956A	p.F319Y	CCAAGTTCACCTT	.	302	80	395	0	.	0	0	0	0	0	A	92920319	T	A	92920319	3	1	51	1	0	0	0	0	1	0	0	0	14503	1783	62	5	947	5	SLC24A4	14	92920319	Missense_Mutation	SNP	T	TCGA-OR-A5LD-01A-11D-A29I-10	67818701	92920319	14429221	72	10280										
AHNAK2	113146	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr14	105404743	105404743	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0560747663551402	6	0.929330005145667	1.31370851370851	1.8474025974026	1.0192566054635	1	1	0	taggcagttctgcctctggtCgtgcctcaggctgtgtttga	13	10	3	1	novel		TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	AHNAK2-47	NM_138420	exon7	c.G17045A	p.R5682Q	TCTGGTCGTGCCT	.	153	42	145	1	.	0	0	0	0	0	T	105404743	C	T	105404743	3	4	51	1	0	0	0	0	1	0	0	0	415	884	31	1	346	1	AHNAK2	14	105404743	Missense_Mutation	SNP	C	TCGA-OR-A5LD-01A-11D-A29I-10	12484424	105404743	1944797	73	10281										
RYR3	6263	ucsc.edu;bcgsc.ca;mdanderson.org	37	chr15	34030716	34030716	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0560747663551402	6	0.929330005145667	1.31370851370851	1.8474025974026	1.0192566054635	1	1	0	ccttcaggatgggggagctaCgggctagctgtggaagaaga	17	7	1	2	rs112521485		TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	RYR3-520	NM_001243996	exon50	c.C7581T	p.Y2527Y	GAGCTACGGGCTA	.	57	25	110	1	C|0.995;T|0.005	0	0	0	0	0	T	34030716	C	T	34030716	2	4	51	1	0	0	0	0	0	0	0	1	13805	547	19	1		1	RYR3	15	34030716	Silent	SNP	C	TCGA-OR-A5LD-01A-11D-A29I-10		34030716	68500676	74	10282										
SCG3	29106	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr15	51981440	51981440	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0560747663551402	6	0.929330005145667	1.31370851370851	1.8474025974026	1.0192566054635	1	1	0	cagaaagccaagcacatacaCtggaagatgaagtagcagag	11	8	0	4	novel		TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	SCG3-91	NM_013243	exon6	c.C565G	p.L189V	CATACACTGGAAG	.	86	8	159	0	.	0	0	0	0	0	G	51981440	C	G	51981440	3	3	51	1	0	0	0	0	1	0	0	0	13927	564	20	3	587	3	SCG3	15	51981440	Missense_Mutation	SNP	C	TCGA-OR-A5LD-01A-11D-A29I-10	17950724	51981440	50549952	75	10283										
NARG2	79664	bcgsc.ca	37	chr15	60734697	60734697	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0560747663551402	6	0.929330005145667	1.31370851370851	1.8474025974026	1.0192566054635	1	1	0	tcagtcagagcttcaactccAtaacaagcttgatactctac	5	12	4	2	rs55905322		TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	NARG2-227	NM_024611	exon12	c.T2343C	p.Y781Y	AACTCCATAACAA	.	316	12	393	4	.	2	2	0	0	0	G	60734697	A	G	60734697	2	3	51	1	0	0	0	0	0	0	0	1	10197	224	8	4		4	NARG2	15	60734697	Silent	SNP	A	TCGA-OR-A5LD-01A-11D-A29I-10	8753257	60734697	41796695	76	10284										
ZNF598	90850	hgsc.bcm.edu	37	chr16	2059674	2059674	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0560747663551402	6	0.929330005145667	1.31370851370851	1.8474025974026	1.0192566054635	1	1	0	acagcacgcagctcccgcctTcccgctcaggagctgccgcc	10	20	1	0	rs71384660		TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	ZNF598-432	NM_178167	exon2	c.A74G	p.E25G	CCGCCTTCCCGCT	.	8	8	0	0	T|0.007;C|0.993	0	0	0	0	0	C	2059674	T	C	2059674	3	2	51	1	0	0	0	0	1	0	0	0	18065	1770	62	4	2689	4	ZNF598	16	2059674	Missense_Mutation	SNP	T	TCGA-OR-A5LD-01A-11D-A29I-10		2059674	88295079	77	10285										
C16orf45	89927	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	15596190	15596190	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0560747663551402	6	0.929330005145667	1.31370851370851	1.8474025974026	1.0192566054635	1	1	0	aattcttccatgtggggcgaCctcacagagacgggatgtat	12	9	2	1	novel		TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	C16orf45-91	NM_001142469	exon1	c.C12A	p.D4E	GGGCGACCTCACA	.	185	22	127	0	.	0	0	0	0	0	A	15596190	C	A	15596190	3	1	51	1	0	0	0	0	1	0	0	0	1818	506	18	3	124	3	C16orf45	16	15596190	Missense_Mutation	SNP	C	TCGA-OR-A5LD-01A-11D-A29I-10	13536516	15596190	74758563	78	10286										
GTF3C1	2975	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr16	27503663	27503663	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0560747663551402	6	0.929330005145667	1.31370851370851	1.8474025974026	1.0192566054635	1	1	0	gacagccgacacccacctagTggggtgttgaggcagacgca	14	12	0	2	novel		TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	GTF3C1-94	NM_001520	exon19	c.A3147G	p.P1049P	ACCTAGTGGGGTG	.	137	24	94	0	.	0	0	0	0	0	C	27503663	T	C	27503663	2	2	51	1	0	0	0	0	0	0	0	1	6893	1683	59	4		4	GTF3C1	16	27503663	Silent	SNP	T	TCGA-OR-A5LD-01A-11D-A29I-10	11907473	27503663	62851090	79	10287										
CDIPT	10423	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr16	29870513	29870515	+	In_Frame_Del	DEL	CTT	CTT	-													0.0560747663551402	6	0.929330005145667	1.31370851370851	1.8474025974026	1.0192566054635	1	1	0	gacccggggctccagcgtcaCttcttcttggcgcggtctgc					novel		TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10	CTT	CTT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	CDIPT-90	NM_006319	exon6	c.637_639del	p.213_213del	GCGTCACTTCTTC	.	149	34	108	0	.	0	0	0	0	0	-	29870515	CTT	-	29870513	7	5	51	1	0	1	0	1	0	0	0	0	3129	564	20	0	6	0	CDIPT	16	29870513	In_Frame_Del	DEL	CTT	TCGA-OR-A5LD-01A-11D-A29I-10	2366850	29870513	60484240	80	10288										
ABCC11	85320	broad.mit.edu	37	chr16	48245093	48245093	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0560747663551402	6	0.929330005145667	1.31370851370851	1.8474025974026	1.0192566054635	1	1	0	tggacatagaaaacagggctCtcctggaggaaaaacttctg	11	8	2	1	novel		TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	ABCC11-95	NM_033151	exon10	c.G1374A	p.E458E	AGGGCTCTCCTGG	.	25	3	35	0	.	0	0	0	0	0	T	48245093	C	T	48245093	2	4	51	1	0	0	0	0	0	0	0	1	51	912	32	3		3	ABCC11	16	48245093	Silent	SNP	C	TCGA-OR-A5LD-01A-11D-A29I-10	18374580	48245093	42109660	81	10289										
N4BP1	9683	broad.mit.edu;bcgsc.ca	37	chr16	48595678	48595678	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0560747663551402	6	0.929330005145667	1.31370851370851	1.8474025974026	1.0192566054635	1	1	0	aactgcttcttcgtatgcctTtcttcagaatcagaaaatct	5	10	5	2	novel		TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	N4BP1-22	NM_153029	exon2	c.A876C	p.E292D	ATGCCTTTCTTCA	.	15	4	37	0	.	0	0	0	0	0	G	48595678	T	G	48595678	3	3	51	1	0	0	0	0	1	0	0	0	10137	1838	64	5	1838	5	N4BP1	16	48595678	Missense_Mutation	SNP	T	TCGA-OR-A5LD-01A-11D-A29I-10	350585	48595678	41759075	82	10290										
ELMO3	79767	broad.mit.edu	37	chr16	67234630	67234630	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0560747663551402	6	0.929330005145667	1.31370851370851	1.8474025974026	1.0192566054635	1	1	0	ggcccttgggctgctggagaGtgtgaccttgagcagcccag	16	11	0	3	novel		TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	ELMO3-90	NM_024712	exon7	c.G743A	p.S248N	TGGAGAGTGTGAC	.	294	32	100	2	.	3	1	2	0	0	A	67234630	G	A	67234630	3	1	51	1	0	0	0	0	1	0	0	0	5080	1029	36	3	769	3	ELMO3	16	67234630	Missense_Mutation	SNP	G	TCGA-OR-A5LD-01A-11D-A29I-10	18638952	67234630	23120123	83	10291										
PKD1L2	114780	bcgsc.ca	37	chr16	81185478	81185478	+	RNA	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0560747663551402	6	0.929330005145667	1.31370851370851	1.8474025974026	1.0192566054635	1	1	0	gcacaggaaataccacttccGgtccatcaccaggtcataga	8	13	2	1	novel		TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	PKD1L2-92	.	.	.	.	ACTTCCGGTCCAT	.	168	7	326	2	.	0	0	0	0	0	A	81185478	G	A	81185478	1	1	51	0	1	0	0	0	0	0	0	0	11994	1115	39	1		1	PKD1L2	16	81185478	RNA	SNP	G	TCGA-OR-A5LD-01A-11D-A29I-10	13950848	81185478	9169275	84	10292										
ACAP1	9744	hgsc.bcm.edu	37	chr17	7251272	7251273	+	Frame_Shift_Del	DEL	TC	TC	-													0.0560747663551402	6	0.929330005145667	1.31370851370851	1.8474025974026	1.0192566054635	1	1	0	ttcacttctccaaagtccggTctctgacccttgactcatgg					novel		TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10	TC	TC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	ACAP1-153	NM_014716	exon15	c.1375_1376del	p.459_459del	GTCCGGTCTCTGA	.	87	14	94	1	.	0	0	0	0	0	-	7251273	TC	-	7251272	7	5	51	1	0	1	0	1	0	0	0	0	118	1667	58	0	1433	0	ACAP1	17	7251272	Frame_Shift_Del	DEL	TC	TCGA-OR-A5LD-01A-11D-A29I-10		7251272	73943938	85	10293										
IGFBP4	3487	hgsc.bcm.edu	37	chr17	38600092	38600092	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0560747663551402	6	0.929330005145667	1.31370851370851	1.8474025974026	1.0192566054635	1	1	0	ccctgctccgaggagaagctGgcgcgctgccgcccccccgt	13	19	0	1	rs598892	byfrequency	TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	IGFBP4-522	NM_001552	exon1	c.G105A	p.L35L	GAAGCTGGCGCGC	.	7	6	1	0	G|0.645;A|0.355	0	0	0	0	0	A	38600092	G	A	38600092	2	1	51	1	0	0	0	0	0	0	0	1	7602	1335	47	3		3	IGFBP4	17	38600092	Silent	SNP	G	TCGA-OR-A5LD-01A-11D-A29I-10	31348820	38600092	42595118	86	10294										
QRICH2	84074	bcgsc.ca	37	chr17	74288508	74288508	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0560747663551402	6	0.929330005145667	1.31370851370851	1.8474025974026	1.0192566054635	1	1	0	gttggaccaaaccatgctgaTctgcaccaggttggaccaaa	10	11	1	1	novel		TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	QRICH2-94	NM_032134	exon4	c.A1802T	p.D601V	TGCTGATCTGCAC	.	288	13	297	3	.	0	0	0	0	0	A	74288508	T	A	74288508	3	1	51	1	0	0	0	0	1	0	0	0	12915	1435	50	5	3253	5	QRICH2	17	74288508	Missense_Mutation	SNP	T	TCGA-OR-A5LD-01A-11D-A29I-10	35688416	74288508	6906702	87	10295										
ENGASE	64772	hgsc.bcm.edu	37	chr17	77071040	77071040	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0560747663551402	6	0.929330005145667	1.31370851370851	1.8474025974026	1.0192566054635	1	1	0	cagtgtcatggaggccgcggCggtgacggtcacccggtcgg	18	12	2	1	rs56107536		TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	ENGASE-91	NM_001042573	exon1	c.C14A	p.A5E	CCGCGGCGGTGAC	.	7	5	0	0	C|0.836;A|0.164	0	0	0	0	0	A	77071040	C	A	77071040	3	1	51	1	0	0	0	0	1	0	0	0	5131	768	27	2	16	2	ENGASE	17	77071040	Missense_Mutation	SNP	C	TCGA-OR-A5LD-01A-11D-A29I-10	2782532	77071040	4124170	88	10296										
THOC1	9984	broad.mit.edu;bcgsc.ca	37	chr18	268019	268021	+	Frame_Shift_Del	DEL	TCT	TCT	-													0.0560747663551402	6	0.929330005145667	1.31370851370851	1.8474025974026	1.0192566054635	1	1	0	gagcggcggcgtcggagacaTcttctcggctgcgcgtgccc					novel		TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	THOC1-91	NM_005131	wholegene			GAGACATCTTCTC	.	69	0	102	0	.	0	0	0	0	0	-	268021	TCT	-	268019	7	5	51	1	0	1	0	1	0	0	0	0	15901	1435	50	0	2056	0	THOC1	18	268019	Frame_Shift_Del	DEL	TCT	TCGA-OR-A5LD-01A-11D-A29I-10		268019	77809229	89	10297										
RNF165	494470	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr18	44013156	44013156	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0560747663551402	6	0.929330005145667	1.31370851370851	1.8474025974026	1.0192566054635	1	1	0	ctgtccttgccttccaggtgCcccctttcaaaggtctcagc	8	16	2	0	novel		TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	RNF165-90	NM_152470	exon2	c.C65T	p.A22V	CAGGTGCCCCCTT	.	126	28	78	1	.	0	0	0	0	0	T	44013156	C	T	44013156	3	4	51	1	0	0	0	0	1	0	0	0	13491	739	26	3	71	3	RNF165	18	44013156	Missense_Mutation	SNP	C	TCGA-OR-A5LD-01A-11D-A29I-10	43745137	44013156	34064092	90	10298										
MUC16	94025	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	9045734	9045734	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0560747663551402	6	0.929330005145667	1.31370851370851	1.8474025974026	1.0192566054635	1	1	0	ccattgtagttctcaagataGtggttggactcactccttct	8	10	3	1	novel		TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	MUC16-566	NM_024690	exon5	c.C35897G	p.T11966S	AAGATAGTGGTTG	.	306	100	297	0	.	0	0	0	0	0	C	9045734	G	C	9045734	3	2	51	1	0	0	0	0	1	0	0	0	10001	1029	36	3	7946	3	MUC16	19	9045734	Missense_Mutation	SNP	G	TCGA-OR-A5LD-01A-11D-A29I-10		9045734	50083249	91	10299										
DNMT1	1786	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	10259655	10259655	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0560747663551402	6	0.929330005145667	1.31370851370851	1.8474025974026	1.0192566054635	1	1	0	tggtagaagtaggtcttcccGtcgtccccctccagcaggga	12	13	1	1	rs200928585		TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	DNMT1-660	NM_001130823	exon27	c.C2625T	p.D875D	CTTCCCGTCGTCC	.	170	36	112	0	G|0.999;A|0.000	0	0	0	0	0	A	10259655	G	A	10259655	2	1	51	1	0	0	0	0	0	0	0	1	4686	1136	40	1		1	DNMT1	19	10259655	Silent	SNP	G	TCGA-OR-A5LD-01A-11D-A29I-10	1213921	10259655	48869328	92	10300										
UQCRFS1	7386	hgsc.bcm.edu	37	chr19	29704002	29704002	+	Silent	SNP	T	T	C													0.0560747663551402	6	0.929330005145667	1.31370851370851	1.8474025974026	1.0192566054635	1	1	0	aggacgggcgcgaacgggccTgagcgggatgctaccgacaa					rs11666764	byfrequency	TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	UQCRFS1-226	NM_006003	exon1	c.A24G	p.S8S	CGGGCCTGAGCGG	.	7	6	0	0	T|0.072;C|0.928	0	0	0	0	0	C	29704002	T	C	29704002	2	2	51	1	0	0	0	0	0	0	0	1	17059	1567	55	4		4	UQCRFS1	19	29704002	Silent	SNP	T	TCGA-OR-A5LD-01A-11D-A29I-10	19444347	29704002	29424981	93	10301	119	2								
UQCRFS1	7386	hgsc.bcm.edu	37	chr19	29704010	29704010	+	Missense_Mutation	SNP	A	A	C													0.0560747663551402	6	0.929330005145667	1.31370851370851	1.8474025974026	1.0192566054635	1	1	0	cgcgaacgggcctgagcgggAtgctaccgacaacatggcga					rs8100724	byfrequency	TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	UQCRFS1-226	NM_006003	exon1	c.T16G	p.S6A	AGCGGGATGCTAC	.	8	8	0	0	A|0.065;C|0.935	0	0	0	0	0	C	29704010	A	C	29704010	3	2	51	1	0	0	0	0	1	0	0	0	17059	333	12	5	816	5	UQCRFS1	19	29704010	Missense_Mutation	SNP	A	TCGA-OR-A5LD-01A-11D-A29I-10	8	29704010	29424973	94	10302	119	2								
ZNF420	147923	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	37619839	37619839	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0560747663551402	6	0.929330005145667	1.31370851370851	1.8474025974026	1.0192566054635	1	1	0	atatcaatgtaaggaatgtgGgaaggcctttactcgtggtt	12	5	1	0	novel		TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	ZNF420-90	NM_144689	exon5	c.G1946A	p.G649E	AATGTGGGAAGGC	.	88	22	60	0	.	1	1	0	0	0	A	37619839	G	A	37619839	3	1	51	1	0	0	0	0	1	0	0	0	17934	1232	43	3	1956	3	ZNF420	19	37619839	Missense_Mutation	SNP	G	TCGA-OR-A5LD-01A-11D-A29I-10	7915829	37619839	21509144	95	10303										
ADCK4	79934	hgsc.bcm.edu;broad.mit.edu	37	chr19	41220217	41220217	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0560747663551402	6	0.929330005145667	1.31370851370851	1.8474025974026	1.0192566054635	1	1	0	tcttcctgggacgggcctccCgtgccctgcgaatgtcctcc	11	17	1	0	novel		TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	ADCK4-319	NM_001142555	exon3	c.G188C	p.R63P	GCCTCCCGTGCCC	.	35	8	28	0	.	0	0	0	0	0	G	41220217	C	G	41220217	3	3	51	1	0	0	0	0	1	0	0	0	290	652	23	2	1498	2	ADCK4	19	41220217	Missense_Mutation	SNP	C	TCGA-OR-A5LD-01A-11D-A29I-10	3600378	41220217	17908766	96	10304										
ERF	2077	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	42753866	42753866	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0560747663551402	6	0.929330005145667	1.31370851370851	1.8474025974026	1.0192566054635	1	1	0	taccacccgacggcactggcGgggcactctggggcactgca	14	15	1	0	novel		TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	ERF-658	NM_006494	exon4	c.C398T	p.P133L	ACTGGCGGGGCAC	.	103	23	96	0	.	4	2	2	0	0	A	42753866	G	A	42753866	3	1	51	1	0	0	0	0	1	0	0	0	5234	1116	39	1	1252	1	ERF	19	42753866	Missense_Mutation	SNP	G	TCGA-OR-A5LD-01A-11D-A29I-10	1533649	42753866	16375117	97	10305										
ZNF226	7769	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr19	44680835	44680837	+	In_Frame_Del	DEL	TCA	TCA	-													0.0560747663551402	6	0.929330005145667	1.31370851370851	1.8474025974026	1.0192566054635	1	1	0	gagttcacactggagagaagTcatacatatgtactgtatgt					novel		TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10	TCA	TCA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	.	NM_001032372	exon6	c.1420_1422del	p.474_474del	GAGAAGTCATACA	.	141	20	131	0	.	0	0	0	0	0	-	44680837	TCA	-	44680835	7	5	51	1	0	1	0	1	0	0	0	0	17817	1667	58	0	1488	0	ZNF226	19	44680835	In_Frame_Del	DEL	TCA	TCGA-OR-A5LD-01A-11D-A29I-10	1926969	44680835	14448148	98	10306										
SYMPK	8189	broad.mit.edu	37	chr19	46321272	46321272	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0560747663551402	6	0.929330005145667	1.31370851370851	1.8474025974026	1.0192566054635	1	1	0	cgaagccccccaggcgggggTacatggtcagggactggatg	17	11	1	0	novel		TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	SYMPK-91	NM_004819	exon23	c.A3026C	p.Y1009S	CGGGGGTACATGG	.	100	18	74	7	.	31	29	1	1	0	G	46321272	T	G	46321272	3	3	51	1	0	0	0	0	1	0	0	0	15476	1638	57	5	818	5	SYMPK	19	46321272	Missense_Mutation	SNP	T	TCGA-OR-A5LD-01A-11D-A29I-10	1640437	46321272	12807711	99	10307										
LILRB2	10288	broad.mit.edu;bcgsc.ca	37	chr19	54783810	54783810	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0560747663551402	6	0.929330005145667	1.31370851370851	1.8474025974026	1.0192566054635	1	1	0	taatccaagatgctgattttTtctccctatatagacggtac	6	9	1	3	novel		TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	LILRB2-91	NM_005874	exon4	c.A191G	p.K64R	GATTTTTTCTCCC	.	209	6	212	0	.	0	0	0	0	0	C	54783810	T	C	54783810	3	2	51	1	0	0	0	0	1	0	0	0	8814	1841	64	4	1649	4	LILRB2	19	54783810	Missense_Mutation	SNP	T	TCGA-OR-A5LD-01A-11D-A29I-10	8462538	54783810	4345173	100	10308										
PANK2	80025	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr20	3869889	3869889	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0560747663551402	6	0.929330005145667	1.31370851370851	1.8474025974026	1.0192566054635	1	1	0	ccccgccccgtcacgatagcCtctcattggacggaggcacg	11	17	2	0	novel		TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	PANK2-115	NM_153638	exon1	c.C142G	p.L48V	GATAGCCTCTCAT	.	118	46	162	0	.	0	0	0	0	0	G	3869889	C	G	3869889	3	3	51	1	0	0	0	0	1	0	0	0	11446	681	24	3	144	3	PANK2	20	3869889	Missense_Mutation	SNP	C	TCGA-OR-A5LD-01A-11D-A29I-10		3869889	59155631	101	10309										
PAK7	57144	broad.mit.edu	37	chr20	9546653	9546653	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0560747663551402	6	0.929330005145667	1.31370851370851	1.8474025974026	1.0192566054635	1	1	0	tacgatgccggttgagccttCcccgattttgataaagttgg	11	9	0	2	novel		TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	PAK7-1434	NM_177990	exon5	c.G1369T	p.E457X	AGCCTTCCCCGAT	.	191	6	192	0	.	0	0	0	0	0	A	9546653	C	A	9546653	4	1	51	1	0	0	0	0	0	1	0	0	11434	864	30	3	814	3	PAK7	20	9546653	Nonsense_Mutation	SNP	C	TCGA-OR-A5LD-01A-11D-A29I-10	5676764	9546653	53478867	102	10310										
NINL	22981	bcgsc.ca	37	chr20	25439036	25439036	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0560747663551402	6	0.929330005145667	1.31370851370851	1.8474025974026	1.0192566054635	1	1	0	tacccgctgtgcatccaggcGcctcctggcctgctctccct	9	19	1	0	rs41310175	byfrequency	TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	NINL-94	NM_025176	exon22	c.C3826T	p.R1276C	CCAGGCGCCTCCT	.	115	6	101	1	G|0.973;A|0.027	9	9	0	0	0	A	25439036	G	A	25439036	3	1	51	1	0	0	0	0	1	0	0	0	10449	1087	38	1	334	1	NINL	20	25439036	Missense_Mutation	SNP	G	TCGA-OR-A5LD-01A-11D-A29I-10	15892383	25439036	37586484	103	10311										
TIAM1	7074	broad.mit.edu	37	chr21	32624321	32624321	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0560747663551402	6	0.929330005145667	1.31370851370851	1.8474025974026	1.0192566054635	1	1	0	cccgccggaagttctcgtacAccccctgacgagccgcatcc	9	19	1	1	novel		TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	TIAM1-724	NM_003253	exon6	c.T1148G	p.V383G	TCGTACACCCCCT	.	84	17	66	11	.	0	0	0	0	0	C	32624321	A	C	32624321	3	2	51	1	0	0	0	0	1	0	0	0	15927	159	6	5	3723	5	TIAM1	21	32624321	Missense_Mutation	SNP	A	TCGA-OR-A5LD-01A-11D-A29I-10		32624321	15505574	104	10312										
TIMP3	7078	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr22	33255323	33255324	+	Frame_Shift_Ins	INS	-	-	C													0.0560747663551402	6	0.929330005145667	1.31370851370851	1.8474025974026	1.0192566054635	1	1	0	cagctggtaccgaggatgggINScccccccggataaaagcatc					novel		TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	TIMP3-226	NM_000362	exon5	c.595_596insC	p.A199fs	GGATGGGCCCCCC	.	76	20	74	0	.	0	0	0	0	0	C	33255324	-	C	33255323	7	5	51	1	0	1	1	0	0	0	0	0	15956	1203	42	0	613	0	TIMP3	22	33255323	Frame_Shift_Ins	INS	-	TCGA-OR-A5LD-01A-11D-A29I-10		33255323	18049243	105	10313										
GCAT	23464	broad.mit.edu	37	chr22	38205989	38205989	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0560747663551402	6	0.929330005145667	1.31370851370851	1.8474025974026	1.0192566054635	1	1	0	catctttccaggcctgccctTgccccacctgagctgctgta	8	17	1	1	rs2285178	byfrequency	TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	GCAT-90	NM_001171690	exon2	c.T230C	p.L77S	TGCCCTTGCCCCA	.	95	5	145	1	T|0.722;C|0.278	0	0	0	0	0	C	38205989	T	C	38205989	3	2	51	1	0	0	0	0	1	0	0	0	6304	1821	63	4	236	4	GCAT	22	38205989	Missense_Mutation	SNP	T	TCGA-OR-A5LD-01A-11D-A29I-10	4950666	38205989	13098577	106	10314										
AR	367	bcgsc.ca	37	chrX	66765161	66765161	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0560747663551402	6	0.929330005145667	1.31370851370851	1.8474025974026	1.0192566054635	1	1	0	cgccagtttgctgctgctgcAgcagcagcagcagcagcagc	13	14	0	0	rs200185441		TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	AR-661	NM_000044	exon1	c.A173T	p.Q58L	TGCTGCAGCAGCA	.	21	4	35	0	.	0	0	0	0	0	T	66765161	A	T	66765161	3	4	51	1	0	0	0	0	1	0	0	0	836	188	7	5	175	5	AR	23	66765161	Missense_Mutation	SNP	A	TCGA-OR-A5LD-01A-11D-A29I-10		66765161	88505399	107	10315										
PASD1	139135	bcgsc.ca	37	chrX	150840185	150840185	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0560747663551402	6	0.929330005145667	1.31370851370851	1.8474025974026	1.0192566054635	1	1	0	gacgtcaagtgtttctgtggTttatctttatccaactctct	7	9	4	0	rs6627174	byfrequency	TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	PASD1-133	NM_173493	exon13	c.T1371C	p.G457G	CTGTGGTTTATCT	.	87	6	107	0	0|0.003;C|0.270	0	0	0	0	0	C	150840185	T	C	150840185	2	2	51	1	0	0	0	0	0	0	0	1	11500	1712	60	4		4	PASD1	23	150840185	Silent	SNP	T	TCGA-OR-A5LD-01A-11D-A29I-10	84075024	150840185	4430375	108	10316										
TNFRSF25	8718	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr1	6525618	6525618	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	cccagcagcaccaggaggagCgcctgggggacaggtgctgc	17	13	0	0	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	TNFRSF25-714	NM_148966	exon2	c.G42A	p.A14A	GAGGAGCGCCTGG	.	174	141	138	0	.	2	1	1	0	0	T	6525618	C	T	6525618	2	4	52	1	0	0	0	0	0	0	0	1	16333	755	27	1		1	TNFRSF25	1	6525618	Silent	SNP	C	TCGA-OR-A5LJ-01A-11D-A29I-10		6525618	242725003	1	10317										
KLHL21	9903	broad.mit.edu;bcgsc.ca	37	chr1	6659127	6659127	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	ctgacaaagtacatgagtccGtttagagtcgcagtcttggg	12	8	1	3	rs141078522		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	KLHL21-514	NM_014851	exon2	c.C1407T	p.N469N	GAGTCCGTTTAGA	.	187	6	225	0	A|0.000;C|0.000;G|1.000	6	6	0	0	0	A	6659127	G	A	6659127	2	1	52	1	0	0	0	0	0	0	0	1	8397	1136	40	1		1	KLHL21	1	6659127	Silent	SNP	G	TCGA-OR-A5LJ-01A-11D-A29I-10	133509	6659127	242591494	2	10318										
SRM	6723	hgsc.bcm.edu	37	chr1	11119899	11119899	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	agcagctgctccacctgcagTgacagggcctggccgggcca	14	15	0	1	rs7545802		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	SRM-90	NM_003132	exon1	c.A102G	p.S34S	CTGCAGTGACAGG	.	5	5	0	0	T|0.001;C|0.999	27	0	27	0	0	C	11119899	T	C	11119899	2	2	52	1	0	0	0	0	0	0	0	1	15188	1683	59	4		4	SRM	1	11119899	Silent	SNP	T	TCGA-OR-A5LJ-01A-11D-A29I-10	4460772	11119899	238130722	3	10319										
PRAMEF19	645414	broad.mit.edu	37	chr1	13474795	13474798	+	Frame_Shift_Del	DEL	CTTA	CTTA	-													0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	agaagatcctgttgggctccCttacttccctcagtatacgc					novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	.	NM_001099790	exon3	c.1331_1334del	p.444_445del	GGCTCCCTTACTT	.	470	250	863	2	.	0	0	0	0	0	-	13474798	CTTA	-	13474795	7	5	52	1	0	1	0	1	0	0	0	0	12466	681	24	0	109	0	PRAMEF19	1	13474795	Frame_Shift_Del	DEL	CTTA	TCGA-OR-A5LJ-01A-11D-A29I-10	2354896	13474795	235775826	4	10320										
MFAP2	4237	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	17302155	17302155	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	cacctgtagaagcagacctcGttgagacactgtttgcaagg	11	10	0	3	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	MFAP2-514	NM_017459	exon7	c.C357T	p.N119N	GACCTCGTTGAGA	.	96	73	183	0	.	1	1	0	0	0	A	17302155	G	A	17302155	2	1	52	1	0	0	0	0	0	0	0	1	9542	1136	40	1		1	MFAP2	1	17302155	Silent	SNP	G	TCGA-OR-A5LJ-01A-11D-A29I-10	3827360	17302155	231948466	5	10321										
IGSF21	84966	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	18691904	18691904	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	ccggggtgggcgaccctacaCggagcgcccctcccgtggcc	15	18	0	0	rs144142024	byfrequency	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	IGSF21-156	NM_032880	exon6	c.C728T	p.T243M	CCTACACGGAGCG	.	154	125	274	1	C|1.000;T|0.000	3	3	0	0	0	T	18691904	C	T	18691904	3	4	52	1	0	0	0	0	1	0	0	0	7620	536	19	1	750	1	IGSF21	1	18691904	Missense_Mutation	SNP	C	TCGA-OR-A5LJ-01A-11D-A29I-10	1389749	18691904	230558717	6	10322										
EPHB2	2048	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	23222940	23222940	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	cgtgctgactcggagtacacGgacaagctgcaacactacac	10	13	0	1	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	EPHB2-1381	NM_004442	exon9	c.G1737A	p.T579T	GTACACGGACAAG	.	78	62	143	0	.	12	0	12	0	0	A	23222940	G	A	23222940	2	1	52	1	0	0	0	0	0	0	0	1	5188	1103	39	1		1	EPHB2	1	23222940	Silent	SNP	G	TCGA-OR-A5LJ-01A-11D-A29I-10	4531036	23222940	226027681	7	10323										
FUCA1	2517	hgsc.bcm.edu	37	chr1	24194748	24194748	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	gcaacagcgcgggacccgccGgccgcgacctcatccccgga	13	19	1	0	rs2070956	byfrequency	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	FUCA1-153	NM_000147	exon1	c.C29G	p.P10R	CCCGCCGGCCGCG	.	11	8	0	0	G|0.177;C|0.823	1	0	1	0	0	C	24194748	G	C	24194748	3	2	52	1	0	0	0	0	1	0	0	0	6113	1116	39	2	1403	2	FUCA1	1	24194748	Missense_Mutation	SNP	G	TCGA-OR-A5LJ-01A-11D-A29I-10	971808	24194748	225055873	8	10324										
MYOM3	127294	broad.mit.edu	37	chr1	24407850	24407853	+	Frame_Shift_Del	DEL	CAAA	CAAA	-													0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	cattgtccactctttgcactCaaacaggctgctgggtgccg					novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	MYOM3-93	NM_152372	exon19	c.2374_2377del	p.792_793del	TGCACTCAAACAG	.	322	11	504	0	.	0	0	0	0	0	-	24407853	CAAA	-	24407850	7	5	52	1	0	1	0	1	0	0	0	0	10121	835	29	0	2012	0	MYOM3	1	24407850	Frame_Shift_Del	DEL	CAAA	TCGA-OR-A5LJ-01A-11D-A29I-10	213102	24407850	224842771	9	10325										
SEPN1	57190	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	26139207	26139207	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	ttgccgttcactgaggccttCgaccgagccaaggctgagaa	12	12	1	2	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	SEPN1-92	.	.	.	.	GGCCTTCGACCGA	.	62	50	90	0	.	12	1	11	0	0	T	26139207	C	T	26139207	2	4	52	1	0	0	0	0	0	0	0	1	14091	883	31	1		1	SEPN1	1	26139207	Silent	SNP	C	TCGA-OR-A5LJ-01A-11D-A29I-10	1731357	26139207	223111414	10	10326										
CATSPER4	378807	broad.mit.edu	37	chr1	26527381	26527381	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	tggtgcattgtgtggtcgccCgctcggagaaatctggtctc	14	10	2	1	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	CATSPER4-91	NM_198137	exon8	c.C1048T	p.R350C	GTCGCCCGCTCGG	.	147	5	210	1	.	0	0	0	0	0	T	26527381	C	T	26527381	3	4	52	1	0	0	0	0	1	0	0	0	2696	652	23	1	1078	1	CATSPER4	1	26527381	Missense_Mutation	SNP	C	TCGA-OR-A5LJ-01A-11D-A29I-10	388174	26527381	222723240	11	10327										
C1orf172	126695	bcgsc.ca	37	chr1	27277925	27277925	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	cccgagttgaacgaccctccGaggtctgtgggcgagcacgg	15	13	1	1	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	C1orf172-154	NM_152365	exon2	c.C947T	p.S316L	CCCTCCGAGGTCT	.	199	7	265	0	.	0	0	0	0	0	A	27277925	G	A	27277925	3	1	52	1	0	0	0	0	1	0	0	0	2019	1059	37	1	261	1	C1orf172	1	27277925	Missense_Mutation	SNP	G	TCGA-OR-A5LJ-01A-11D-A29I-10	750544	27277925	221972696	12	10328										
RBBP4	5928	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	33134949	33134949	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	ttcattcttgccacaggatcAgctgacaaggtcagtttcgt	9	10	4	1	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	RBBP4-227	NM_005610	exon7	c.A879G	p.S293S	AGGATCAGCTGAC	.	100	87	143	2	.	0	0	0	0	0	G	33134949	A	G	33134949	2	3	52	1	0	0	0	0	0	0	0	1	13136	175	7	4		4	RBBP4	1	33134949	Silent	SNP	A	TCGA-OR-A5LJ-01A-11D-A29I-10	5857024	33134949	216115672	13	10329										
DLGAP3	58512	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	35365799	35365799	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	catggctttgatgtagctgcCgctccgcatcctgcggcagg	13	13	0	1	rs140339373		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	DLGAP3-71	NM_001080418	exon2	c.G1183A	p.G395S	AGCTGCCGCTCCG	.	95	7	125	0	C|0.999;T|0.000	4	3	1	0	0	T	35365799	C	T	35365799	3	4	52	1	0	0	0	0	1	0	0	0	4572	652	23	1	1792	1	DLGAP3	1	35365799	Missense_Mutation	SNP	C	TCGA-OR-A5LJ-01A-11D-A29I-10	2230850	35365799	213884822	14	10330										
KIAA0754	643314	broad.mit.edu	37	chr1	39879079	39879079	+	Frame_Shift_Del	DEL	A	A	-													0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	ccccagctgctgcagtgcccAccccagaggagcccacctcc					novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	.	NM_015038	exon1	c.3142delA	p.T1048fs	GTGCCCACCCCAG	.	22	9	16	0	.	0	0	0	0	0	-	39879079	A	-	39879079	7	5	52	1	0	1	0	1	0	0	0	0	8213	159	6	0	3144	0	KIAA0754	1	39879079	Frame_Shift_Del	DEL	A	TCGA-OR-A5LJ-01A-11D-A29I-10	4513280	39879079	209371542	15	10331										
BMP8B	656	broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr1	40230376	40230376	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	cctcagtggcctcactgcccGaggggtgcggatgggactcg	16	13	2	0	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	BMP8B-91	NM_001720	exon4	c.C787T	p.R263W	CTGCCCGAGGGGT	.	996	157	1460	0	.	0	0	0	0	0	A	40230376	G	A	40230376	3	1	52	1	0	0	0	0	1	0	0	0	1468	1057	37	1	437	1	BMP8B	1	40230376	Missense_Mutation	SNP	G	TCGA-OR-A5LJ-01A-11D-A29I-10	351297	40230376	209020245	16	10332										
FOXJ3	22887	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	42657281	42657281	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	ctgccatgactgttggacagGctgctttggttgctgtgtgg	15	8	0	1	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	FOXJ3-228	NM_001198851	exon11	c.C1044G	p.S348R	GGACAGGCTGCTT	.	169	144	246	0	.	6	0	6	0	0	C	42657281	G	C	42657281	3	2	52	1	0	0	0	0	1	0	0	0	6032	1194	42	3	844	3	FOXJ3	1	42657281	Missense_Mutation	SNP	G	TCGA-OR-A5LJ-01A-11D-A29I-10	2426905	42657281	206593340	17	10333										
LRRC41	10489	broad.mit.edu;bcgsc.ca	37	chr1	46751559	46751559	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	gctctcctgtgtgctccggcGtgttacccgagtggcaggtg	15	12	1	0	rs145805978		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	LRRC41-156	NM_006369	exon4	c.C970T	p.R324C	TCCGGCGTGTTAC	.	48	5	84	0	G|1.000;A|0.000	17	16	1	0	0	A	46751559	G	A	46751559	3	1	52	1	0	0	0	0	1	0	0	0	9026	1145	40	1	1496	1	LRRC41	1	46751559	Missense_Mutation	SNP	G	TCGA-OR-A5LJ-01A-11D-A29I-10	4094278	46751559	202499062	18	10334										
C1orf87	127795	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	60456488	60456488	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	gtgaatgaggcgtctggctcGttccttctccagaactcctg	11	12	2	3	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	C1orf87-154	NM_152377	exon12	c.C1498T	p.R500X	TGGCTCGTTCCTT	.	64	35	125	1	.	0	0	0	0	0	A	60456488	G	A	60456488	4	1	52	1	0	0	0	0	0	1	0	0	2070	1153	40	1	146	1	C1orf87	1	60456488	Nonsense_Mutation	SNP	G	TCGA-OR-A5LJ-01A-11D-A29I-10	13704929	60456488	188794133	19	10335										
C1orf87	127795	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	60463390	60463390	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	acagctggattcacgaagggCtgggagactggcctgatctt	14	9	2	2	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	C1orf87-154	NM_152377	exon11	c.G1371C	p.Q457H	GAAGGGCTGGGAG	.	85	73	125	0	.	0	0	0	0	0	G	60463390	C	G	60463390	3	3	52	1	0	0	0	0	1	0	0	0	2070	796	28	3	277	3	C1orf87	1	60463390	Missense_Mutation	SNP	C	TCGA-OR-A5LJ-01A-11D-A29I-10	6902	60463390	188787231	20	10336										
FOXD3	27022	hgsc.bcm.edu;broad.mit.edu	37	chr1	63789205	63789207	+	In_Frame_Del	DEL	AGA	AGA	-													0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	ggccatcctgcagagcccgcAgaagaagctgaccctgagcg					novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	AGA	AGA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	FOXD3-226	NM_012183	exon1	c.476_478del	p.159_160del	GCCCGCAGAAGAA	.	209	20	301	0	.	0	0	0	0	0	-	63789207	AGA	-	63789205	7	5	52	1	0	1	0	1	0	0	0	0	6017	188	7	0	478	0	FOXD3	1	63789205	In_Frame_Del	DEL	AGA	TCGA-OR-A5LJ-01A-11D-A29I-10	3325815	63789205	185461416	21	10337										
SGIP1	84251	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	67155933	67155933	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	ctccaatagcacccttagcgCgggctgaaagcacttcttca	8	14	2	1	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	SGIP1-93	NM_032291	exon17	c.C1504T	p.R502W	TTAGCGCGGGCTG	.	73	61	85	0	.	0	0	0	0	0	T	67155933	C	T	67155933	3	4	52	1	0	0	0	0	1	0	0	0	14241	759	27	1	1570	1	SGIP1	1	67155933	Missense_Mutation	SNP	C	TCGA-OR-A5LJ-01A-11D-A29I-10	3366728	67155933	182094688	22	10338										
SGIP1	84251	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	67195022	67195022	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	agacactttgccaacaacccGtccccagctgctctgacttt	6	16	1	2	rs150154953	byfrequency	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	SGIP1-93	NM_032291	exon20	c.G1818A	p.P606P	CAACCCGTCCCCA	.	146	107	180	0	G|0.999;A|0.001	1	1	0	0	0	A	67195022	G	A	67195022	2	1	52	1	0	0	0	0	0	0	0	1	14241	1132	40	1		1	SGIP1	1	67195022	Silent	SNP	G	TCGA-OR-A5LJ-01A-11D-A29I-10	39089	67195022	182055599	23	10339										
SEP15	0	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	87369102	87369102	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	cctaactctctgcatgcctcCgatgaaaactctgccccaaa	5	16	2	1	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	SEP15-68	.	.	.	.	TGCCTCCGATGAA	.	87	75	97	0	.	53	4	49	0	0	T	87369102	C	T	87369102	2	4	52	1	0	0	0	0	0	0	0	1	14088	639	23	1		1	SEP15	1	87369102	Silent	SNP	C	TCGA-OR-A5LJ-01A-11D-A29I-10	20174080	87369102	161881519	24	10340										
LPPR5	0	broad.mit.edu	37	chr1	99470095	99470097	+	In_Frame_Del	DEL	AGA	AGA	-													0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	gcggtaggcgctgtcgtggcAgaagaagccctgcacgttca					novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	.	NM_001010861	exon1	c.131_133del	p.44_45del	CGTGGCAGAAGAA	.	234	8	290	0	.	0	0	0	0	0	-	99470097	AGA	-	99470095	7	5	52	1	0	1	0	1	0	0	0	0	8955	188	7	0	856	0	LPPR5	1	99470095	In_Frame_Del	DEL	AGA	TCGA-OR-A5LJ-01A-11D-A29I-10	12100993	99470095	149780526	25	10341										
KCNC4	3749	bcgsc.ca	37	chr1	110766454	110766454	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	gtctgaggagacttccccccGggacagcacctgcagtgata	12	13	1	3	rs59123361	byfrequency	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	KCNC4-154	NM_001039574	exon2	c.G1547A	p.R516Q	CCCCCCGGGACAG	.	93	4	200	0	G|0.919;A|0.081	4	4	0	0	0	A	110766454	G	A	110766454	3	1	52	1	0	0	0	0	1	0	0	0	8038	1116	39	1	1553	1	KCNC4	1	110766454	Missense_Mutation	SNP	G	TCGA-OR-A5LJ-01A-11D-A29I-10	11296359	110766454	138484167	26	10342										
OLFML3	56944	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	114524270	114524270	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	agcactcccttattttccccGcagatatggtgcccatgcca	7	15	0	1	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	OLFML3-68	NM_020190	exon3	c.G1100A	p.R367H	TTCCCCGCAGATA	.	85	11	120	0	.	0	0	0	0	0	A	114524270	G	A	114524270	3	1	52	1	0	0	0	0	1	0	0	0	10888	1087	38	1	1110	1	OLFML3	1	114524270	Missense_Mutation	SNP	G	TCGA-OR-A5LJ-01A-11D-A29I-10	3757816	114524270	134726351	27	10343										
TSPAN2	10100	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	115615562	115615562	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	tggggacttgtcctctgatgAtaactcctttatggcacctc	9	11	1	2	rs199774469		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	TSPAN2-226	NM_005725	exon2	c.T136C	p.S46P	CTGATGATAACTC	.	97	75	127	2	A|0.999;G|0.001	0	0	0	0	0	G	115615562	A	G	115615562	3	3	52	1	0	0	0	0	1	0	0	0	16682	333	12	4	557	4	TSPAN2	1	115615562	Missense_Mutation	SNP	A	TCGA-OR-A5LJ-01A-11D-A29I-10	1091292	115615562	133635059	28	10344										
THEM4	117145	hgsc.bcm.edu	37	chr1	151881885	151881885	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	ggcgccggcctactggcggcAggcacagagcccccagcgtg	16	16	0	1	rs3748805		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	THEM4-522	NM_053055	exon1	c.T50G	p.L17R	GGCGGCAGGCACA	.	9	9	0	0	T|0.073;G|0.921	1	0	1	0	0	C	151881885	A	C	151881885	3	2	52	1	0	0	0	0	1	0	0	0	15895	188	7	5	696	5	THEM4	1	151881885	Missense_Mutation	SNP	A	TCGA-OR-A5LJ-01A-11D-A29I-10	36266323	151881885	97368736	29	10345										
RPTN	126638	bcgsc.ca	37	chr1	152128212	152128212	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	ggaactctggccttgtctgtCtgtctgaccatagtgggaat	12	9	4	1	rs143744326	byfrequency	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	RPTN-68	NM_001122965	exon3	c.G1363C	p.D455H	GTCTGTCTGTCTG	.	187	6	273	0	C|0.978;G|0.022	0	0	0	0	0	G	152128212	C	G	152128212	3	3	52	1	0	0	0	0	1	0	0	0	13699	913	32	3	995	3	RPTN	1	152128212	Missense_Mutation	SNP	C	TCGA-OR-A5LJ-01A-11D-A29I-10	246327	152128212	97122409	30	10346										
LCE2B	26239	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	152659333	152659333	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	tgccaggatgtcttgccagcAaaaccagcagcagtgccagc	11	13	1	0	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	LCE2B-92	NM_014357	exon2	c.A14G	p.Q5R	GCCAGCAAAACCA	.	80	69	86	0	.	0	0	0	0	0	G	152659333	A	G	152659333	3	3	52	1	0	0	0	0	1	0	0	0	8688	130	5	4	16	4	LCE2B	1	152659333	Missense_Mutation	SNP	A	TCGA-OR-A5LJ-01A-11D-A29I-10	531121	152659333	96591288	31	10347										
HCN3	57657	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	155257602	155257602	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	ttccatactgcagcggaagcGctccgagccaagtccaggca	11	14	0	0	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	HCN3-154	NM_020897	exon8	c.G1673A	p.R558H	GGAAGCGCTCCGA	.	254	39	456	1	.	8	8	0	0	0	A	155257602	G	A	155257602	3	1	52	1	0	0	0	0	1	0	0	0	7019	1087	38	1	1703	1	HCN3	1	155257602	Missense_Mutation	SNP	G	TCGA-OR-A5LJ-01A-11D-A29I-10	2598269	155257602	93993019	32	10348										
MEF2D	4209	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	156437983	156437983	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	aacacagctggagggggaggCgcagggctgcgctcacggct	18	11	1	0	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	MEF2D-659	NM_005920	exon11	c.G1356A	p.A452A	GGGAGGCGCAGGG	.	73	63	40	0	.	16	0	16	0	0	T	156437983	C	T	156437983	2	4	52	1	0	0	0	0	0	0	0	1	9486	755	27	1		1	MEF2D	1	156437983	Silent	SNP	C	TCGA-OR-A5LJ-01A-11D-A29I-10	1180381	156437983	92812638	33	10349										
NES	10763	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr1	156640677	156640677	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	agccctcccaccccctgcccCgggcctggctcagctcccgc	9	24	1	0	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	NES-520	NM_006617	exon4	c.G3303A	p.P1101P	CTGCCCCGGGCCT	.	52	47	48	0	.	2	0	2	0	0	T	156640677	C	T	156640677	2	4	52	1	0	0	0	0	0	0	0	1	10366	639	23	1		1	NES	1	156640677	Silent	SNP	C	TCGA-OR-A5LJ-01A-11D-A29I-10	202694	156640677	92609944	34	10350										
HDGF	3068	bcgsc.ca	37	chr1	156713558	156713558	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	ggccagagccgggctcagagGgggtgctattcttttccacc	14	12	2	2	rs4399146	byfrequency	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	HDGF-226	NM_001126050	exon5	c.C650T	p.P217L	TCAGAGGGGGTGC	.	36	4	52	0	G|0.789;A|0.211	63	63	0	0	0	A	156713558	G	A	156713558	3	1	52	1	0	0	0	0	1	0	0	0	7039	1232	43	3	128	3	HDGF	1	156713558	Missense_Mutation	SNP	G	TCGA-OR-A5LJ-01A-11D-A29I-10	72881	156713558	92537063	35	10351										
CD5L	922	bcgsc.ca;mdanderson.org	37	chr1	157805632	157805632	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	ctgccatactcactctcacaCgatgccccagcatcttcatc	4	18	4	0	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	CD5L-91	NM_005894	exon3	c.G369A	p.S123S	CTCACACGATGCC	.	42	31	57	2	.	0	0	0	0	0	T	157805632	C	T	157805632	2	4	52	1	0	0	0	0	0	0	0	1	3033	523	19	1		1	CD5L	1	157805632	Silent	SNP	C	TCGA-OR-A5LJ-01A-11D-A29I-10	1092074	157805632	91444989	36	10352										
NHLH1	4807	hgsc.bcm.edu	37	chr1	160340658	160340658	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	tccgggagggggccaggcccGaggcccagagccgggagagc	20	13	0	2	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	NHLH1-69	NM_005598	exon2	c.G137A	p.R46Q	AGGCCCGAGGCCC	.	24	21	2	0	.	0	0	0	0	0	A	160340658	G	A	160340658	3	1	52	1	0	0	0	0	1	0	0	0	10432	1058	37	1	139	1	NHLH1	1	160340658	Missense_Mutation	SNP	G	TCGA-OR-A5LJ-01A-11D-A29I-10	2535026	160340658	88909963	37	10353										
UCK2	7371	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	165865482	165865482	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	tggtgctctttgaagggatcCtggccttctactcccaggag	12	11	2	1	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	UCK2-91	NM_012474	exon4	c.C412A	p.L138M	GGGATCCTGGCCT	.	145	19	190	0	.	7	7	0	0	0	A	165865482	C	A	165865482	3	1	52	1	0	0	0	0	1	0	0	0	16962	680	24	3	426	3	UCK2	1	165865482	Missense_Mutation	SNP	C	TCGA-OR-A5LJ-01A-11D-A29I-10	5524824	165865482	83385139	38	10354										
ILDR2	387597	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	166891885	166891885	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	ctccatggctgagggcccgcGgcttgccccactgctgcctc	12	18	0	1	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	ILDR2-91	NM_199351	exon8	c.C1156T	p.R386C	GCCCGCGGCTTGC	.	61	45	114	0	.	0	0	0	0	0	A	166891885	G	A	166891885	3	1	52	1	0	0	0	0	1	0	0	0	7731	1116	39	1	775	1	ILDR2	1	166891885	Missense_Mutation	SNP	G	TCGA-OR-A5LJ-01A-11D-A29I-10	1026403	166891885	82358736	39	10355										
SELP	6403	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	169559391	169559391	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	tatagggatcttaccttaagGactcgggtcaaatgcagcgt	11	8	2	0	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	SELP-94	NM_003005	exon16	c.C2488T	p.P830S	CTTAAGGACTCGG	.	43	35	63	0	.	0	0	0	0	0	A	169559391	G	A	169559391	3	1	52	1	0	0	0	0	1	0	0	0	14054	1174	41	3	8	3	SELP	1	169559391	Missense_Mutation	SNP	G	TCGA-OR-A5LJ-01A-11D-A29I-10	2667506	169559391	79691230	40	10356										
RASAL2	9462	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	178412191	178412191	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	cttctattcggattaaatcaCgtttccaaactatcaccatt	3	11	3	0	rs200438546		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	RASAL2-155	NM_170692	exon8	c.C1309T	p.R437C	AAATCACGTTTCC	.	107	29	145	0	.	1	0	1	0	0	T	178412191	C	T	178412191	3	4	52	1	0	0	0	0	1	0	0	0	13099	536	19	1	1356	1	RASAL2	1	178412191	Missense_Mutation	SNP	C	TCGA-OR-A5LJ-01A-11D-A29I-10	8852800	178412191	70838430	41	10357										
CACNA1E	777	broad.mit.edu	37	chr1	181702849	181702849	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	agcgtcaccgtcgccatcccCgacgtggaccccttggtgga	12	16	1	0	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	CACNA1E-95	NM_000721	exon21	c.C3225T	p.P1075P	CATCCCCGACGTG	.	342	7	436	0	.	0	0	0	0	0	T	181702849	C	T	181702849	2	4	52	1	0	0	0	0	0	0	0	1	2548	639	23	1		1	CACNA1E	1	181702849	Silent	SNP	C	TCGA-OR-A5LJ-01A-11D-A29I-10	3290658	181702849	67547772	42	10358										
LGR6	59352	broad.mit.edu	37	chr1	202287206	202287206	+	Frame_Shift_Del	DEL	T	T	-													0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	cgtgttcgctggcgggcctgTccccctgcccccggtcaagt					novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	LGR6-160	NM_001017403	exon18	c.1775delT	p.V592fs	GGCCTGTCCCCCT	.	101	10	104	0	.	0	0	0	0	0	-	202287206	T	-	202287206	7	5	52	1	0	1	0	1	0	0	0	0	8781	1667	58	0	1992	0	LGR6	1	202287206	Frame_Shift_Del	DEL	T	TCGA-OR-A5LJ-01A-11D-A29I-10	20584357	202287206	46963415	43	10359										
PPFIA4	8497	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	203025515	203025515	+	Silent	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	ctgttcagtcgccagtgtctCgggaagagaaccgagaggat	14	9	2	2	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	PPFIA4-230	NM_015053	exon5	c.C601A	p.R201R	GTGTCTCGGGAAG	.	147	118	262	1	.	0	0	0	0	0	A	203025515	C	A	203025515	2	1	52	1	0	0	0	0	0	0	0	1	12341	875	31	2		2	PPFIA4	1	203025515	Silent	SNP	C	TCGA-OR-A5LJ-01A-11D-A29I-10	738309	203025515	46225106	44	10360										
KCNK2	3776	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	215408439	215408439	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	tatctatctgaatggtttgaCgccacactgtgctggtgaag	11	8	2	3	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	KCNK2-90	NM_001017425	exon7	c.C1232T	p.T411M	GTTTGACGCCACA	.	46	36	87	1	.	11	0	11	0	0	T	215408439	C	T	215408439	3	4	52	1	0	0	0	0	1	0	0	0	8087	536	19	1	1301	1	KCNK2	1	215408439	Missense_Mutation	SNP	C	TCGA-OR-A5LJ-01A-11D-A29I-10	12382924	215408439	33842182	45	10361										
ACBD3	64746	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr1	226342403	226342403	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	tctggttccagttctttttcGgagctgtcagtgtgtgtttt	11	7	3	0	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	ACBD3-226	NM_022735	exon6	c.C1035T	p.S345S	TTTTTCGGAGCTG	.	150	134	194	0	.	12	0	12	0	0	A	226342403	G	A	226342403	2	1	52	1	0	0	0	0	0	0	0	1	123	1103	39	1		1	ACBD3	1	226342403	Silent	SNP	G	TCGA-OR-A5LJ-01A-11D-A29I-10	10933964	226342403	22908218	46	10362										
PARP1	142	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	226555191	226555191	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	accctgttaccttaatgtcaGttttgagcttctcatagttg	7	9	2	1	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	PARP1-727	NM_001618	exon17	c.C2396T	p.T799I	ATGTCAGTTTTGA	.	110	24	157	0	.	1	0	1	0	0	A	226555191	G	A	226555191	3	1	52	1	0	0	0	0	1	0	0	0	11483	1029	36	3	676	3	PARP1	1	226555191	Missense_Mutation	SNP	G	TCGA-OR-A5LJ-01A-11D-A29I-10	212788	226555191	22695430	47	10363										
OBSCN	84033	hgsc.bcm.edu	37	chr1	228504670	228504670	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	gcgacgccgtggcctctgcgCggctcaccgtgctgggtggg	18	14	2	0	rs11810627	byfrequency	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	OBSCN-403	NM_001271223	exon62	c.C16417T	p.R5473W	TCTGCGCGGCTCA	.	10	9	0	0	C|0.643;T|0.357	5	0	5	0	0	T	228504670	C	T	228504670	3	4	52	1	0	0	0	0	1	0	0	0	10841	759	27	1	13744	1	OBSCN	1	228504670	Missense_Mutation	SNP	C	TCGA-OR-A5LJ-01A-11D-A29I-10	1949479	228504670	20745951	48	10364										
OBSCN	84033	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	228509610	228509610	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	gctcttccgcaccaaaagtcCggctgaagtttcagatgagg	11	11	2	3	rs182318410		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	OBSCN-403	NM_001271223	exon66	c.C17939T	p.P5980L	AAAGTCCGGCTGA	.	44	32	68	1	C|0.997;T|0.003	3	0	3	0	0	T	228509610	C	T	228509610	3	4	52	1	0	0	0	0	1	0	0	0	10841	652	23	1	15282	1	OBSCN	1	228509610	Missense_Mutation	SNP	C	TCGA-OR-A5LJ-01A-11D-A29I-10	4940	228509610	20741011	49	10365										
HIST3H3	8290	broad.mit.edu;bcgsc.ca	37	chr1	228612628	228612628	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	tagccctcctaggcccgctcCccgcggatacggcgtgccag	12	18	0	0	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	HIST3H3-90	NM_003493	exon1	c.G399A	p.G133G	CCGCTCCCCGCGG	.	209	12	322	1	.	0	0	0	0	0	T	228612628	C	T	228612628	2	4	52	1	0	0	0	0	0	0	0	1	7205	610	22	3		3	HIST3H3	1	228612628	Silent	SNP	C	TCGA-OR-A5LJ-01A-11D-A29I-10	103018	228612628	20637993	50	10366										
URB2	9816	broad.mit.edu;bcgsc.ca	37	chr1	229768022	229768022	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	tccttcaaattcaggtgttaCttgattgggcaagacaatca	8	8	3	2	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	URB2-174	NM_014777	exon3	c.C133A	p.L45I	GTGTTACTTGATT	.	158	8	222	1	.	0	0	0	0	0	A	229768022	C	A	229768022	3	1	52	1	0	0	0	0	1	0	0	0	17063	565	20	3	139	3	URB2	1	229768022	Missense_Mutation	SNP	C	TCGA-OR-A5LJ-01A-11D-A29I-10	1155394	229768022	19482599	51	10367										
SLC35F3	148641	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	234367444	234367444	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	cgttgtactacgtggggcacGtctgcaagtccacagagaag	13	10	1	1	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	SLC35F3-92	NM_173508	exon3	c.G565A	p.V189I	GGGCACGTCTGCA	.	216	172	338	0	.	1	0	1	0	0	A	234367444	G	A	234367444	3	1	52	1	0	0	0	0	1	0	0	0	14625	1145	40	1	575	1	SLC35F3	1	234367444	Missense_Mutation	SNP	G	TCGA-OR-A5LJ-01A-11D-A29I-10	4599422	234367444	14883177	52	10368										
FMN2	56776	hgsc.bcm.edu;bcgsc.ca	37	chr1	240370291	240370295	+	Frame_Shift_Del	DEL	AGGTT	AGGTT	-													0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	atgtctgtctcgaagctctcAggttagaagaaaaggaagta					novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	AGGTT	AGGTT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	FMN2-145	NM_020066	exon5	c.2179_2183del	p.727_728del	GCTCTCAGGTTAG	.	121	92	197	1	.	0	0	0	0	0	-	240370295	AGGTT	-	240370291	7	5	52	1	0	1	0	1	0	0	0	0	5969	179	7	0	2197	0	FMN2	1	240370291	Frame_Shift_Del	DEL	AGGTT	TCGA-OR-A5LJ-01A-11D-A29I-10	6002847	240370291	8880330	53	10369										
TPO	7173	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	1520736	1520736	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	aggcttcgcaggtctcacctCgacggtgatttgcaggtggt	14	10	1	1	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	TPO-332	NM_001206744	exon15	c.C2600T	p.S867L	TCACCTCGACGGT	.	70	57	122	1	.	0	0	0	0	0	T	1520736	C	T	1520736	3	4	52	1	0	0	0	0	1	0	0	0	16448	893	31	1	2654	1	TPO	2	1520736	Missense_Mutation	SNP	C	TCGA-OR-A5LJ-01A-11D-A29I-10		1520736	241678637	54	10370										
LPIN1	23175	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	11960588	11960588	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	ctttgaatagaatatttaccGtcaaccctaaaggagagctg	8	8	1	3	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	LPIN1-156	NM_001261428	exon21	c.G2716A	p.V906I	TTTACCGTCAACC	.	100	75	134	1	.	6	0	6	0	0	A	11960588	G	A	11960588	3	1	52	1	0	0	0	0	1	0	0	0	8945	1145	40	1	2531	1	LPIN1	2	11960588	Missense_Mutation	SNP	G	TCGA-OR-A5LJ-01A-11D-A29I-10	10439852	11960588	231238785	55	10371										
APOB	338	broad.mit.edu	37	chr2	21230766	21230766	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	gcccacatgctgggaatcgaCttgtgattgaatttcaagtt	10	8	1	2	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	APOB-175	NM_000384	exon26	c.G8974A	p.V2992I	AATCGACTTGTGA	.	93	4	163	0	.	0	0	0	0	0	T	21230766	C	T	21230766	3	4	52	1	0	0	0	0	1	0	0	0	785	565	20	3	4733	3	APOB	2	21230766	Missense_Mutation	SNP	C	TCGA-OR-A5LJ-01A-11D-A29I-10	9270178	21230766	221968607	56	10372										
SLC30A6	55676	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	32396391	32396391	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	tttcgaaaaccacaaagatcCttttttggcaagttgttacg	7	8	0	1	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	SLC30A6-90	NM_001193513	exon2	c.C39T	p.S13S	AAGATCCTTTTTT	.	98	42	165	0	.	1	0	1	0	0	T	32396391	C	T	32396391	2	4	52	1	0	0	0	0	0	0	0	1	14594	668	24	3		3	SLC30A6	2	32396391	Silent	SNP	C	TCGA-OR-A5LJ-01A-11D-A29I-10	11165625	32396391	210802982	57	10373										
FEZ2	9637	hgsc.bcm.edu	37	chr2	36825137	36825137	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	tctcctccaagctgcaggccGgggccgggaaaccgtcggcg	15	15	1	0	rs1544655		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	FEZ2-23	NM_001042548	exon1	c.C149T	p.P50L	CAGGCCGGGGCCG	.	4	4	0	0	T|0.817;C|0.180	1	0	1	0	0	A	36825137	G	A	36825137	3	1	52	1	0	0	0	0	1	0	0	0	5843	1116	39	1	1029	1	FEZ2	2	36825137	Missense_Mutation	SNP	G	TCGA-OR-A5LJ-01A-11D-A29I-10	4428746	36825137	206374236	58	10374										
SIX3	6496	hgsc.bcm.edu	37	chr2	45171842	45171842	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	tccagcctgacggagcgcgcAgacaccggcacctccatcct	10	18	0	2	rs62840660	byfrequency	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	SIX3-90	NM_005413	exon2	c.A942G	p.A314A	GCGCGCAGACACC	.	5	5	0	0	A|0.059;G|0.941	0	0	0	0	0	G	45171842	A	G	45171842	2	3	52	1	0	0	0	0	0	0	0	1	14383	175	7	4		4	SIX3	2	45171842	Silent	SNP	A	TCGA-OR-A5LJ-01A-11D-A29I-10	8346705	45171842	198027531	59	10375										
MSH2	4436	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr2	47707899	47707900	+	Frame_Shift_Del	DEL	AG	AG	-													0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	aatttccctaagcatgtaatAgagtgtgctaaacagaaagc					novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	AG	AG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	MSH2-2445	NM_000251	exon15	c.2523_2524del	p.841_842del	TGTAATAGAGTGT	.	112	91	155	0	.	0	0	0	0	0	-	47707900	AG	-	47707899	7	5	52	1	0	1	0	1	0	0	0	0	9898	410	15	0	2581	0	MSH2	2	47707899	Frame_Shift_Del	DEL	AG	TCGA-OR-A5LJ-01A-11D-A29I-10	2536057	47707899	195491474	60	10376										
XPO1	7514	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr2	61729431	61729431	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	cttgataatgaggccaacaaCgtatttttttattcctatta	5	7	0	2	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	XPO1-229	NM_003400	exon5	c.G316A	p.V106I	CAACAACGTATTT	.	89	6	111	0	.	43	43	0	0	0	T	61729431	C	T	61729431	3	4	52	1	0	0	0	0	1	0	0	0	17483	536	19	1	2983	1	XPO1	2	61729431	Missense_Mutation	SNP	C	TCGA-OR-A5LJ-01A-11D-A29I-10	14021532	61729431	181469942	61	10377										
ARHGAP25	9938	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr2	69049670	69049670	+	Frame_Shift_Del	DEL	A	A	-													0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	gcagcaaaatggagatctttAaaaatgaattctggtcgcct					novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	ARHGAP25-274	NM_001007231	exon10	c.1399delA	p.K467fs	ATCTTTAAAAATG	.	110	34	161	0	.	0	0	0	0	0	-	69049670	A	-	69049670	7	5	52	1	0	1	0	1	0	0	0	0	874	363	13	0	1477	0	ARHGAP25	2	69049670	Frame_Shift_Del	DEL	A	TCGA-OR-A5LJ-01A-11D-A29I-10	7320239	69049670	174149703	62	10378										
STAMBP	10617	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	74058012	74058012	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	ccatggagatgtgagcctccCgcccgaagaccgggtgaggg	16	12	0	4	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	STAMBP-524	NM_006463	exon3	c.C29T	p.P10L	GCCTCCCGCCCGA	.	77	65	99	0	.	19	0	19	0	0	T	74058012	C	T	74058012	3	4	52	1	0	0	0	0	1	0	0	0	15287	652	23	1	31	1	STAMBP	2	74058012	Missense_Mutation	SNP	C	TCGA-OR-A5LJ-01A-11D-A29I-10	5008342	74058012	169141361	63	10379										
LOXL3	84695	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	74763595	74763595	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	gccgccctttagacggacacGggcctatagaagagagaagt	13	10	0	4	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	LOXL3-226	NM_032603	exon6	c.C916T	p.R306C	GGACACGGGCCTA	.	60	50	83	0	.	0	0	0	0	0	A	74763595	G	A	74763595	3	1	52	1	0	0	0	0	1	0	0	0	8928	1116	39	1	1381	1	LOXL3	2	74763595	Missense_Mutation	SNP	G	TCGA-OR-A5LJ-01A-11D-A29I-10	705583	74763595	168435778	64	10380										
GNLY	10578	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	85922477	85922477	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	cgtctgagccctgagtactaCgacctggcaagagcccacct	10	15	1	3	rs201139886		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	GNLY-90	NM_006433	exon2	c.C87T	p.Y29Y	GTACTACGACCTG	.	145	128	196	0	C|0.999;T|0.000	1	0	1	0	0	T	85922477	C	T	85922477	2	4	52	1	0	0	0	0	0	0	0	1	6559	547	19	1		1	GNLY	2	85922477	Silent	SNP	C	TCGA-OR-A5LJ-01A-11D-A29I-10	11158882	85922477	157276896	65	10381										
GNLY	10578	ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	85924745	85924745	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	gttacccagggcctcgtggcCggagaaactgcccagcagat	13	13	0	2	rs147680816		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	GNLY-90	NM_006433	exon4	c.C372T	p.A124A	CGTGGCCGGAGAA	.	118	103	132	2	C|1.000;T|0.000	3	3	0	0	0	T	85924745	C	T	85924745	2	4	52	1	0	0	0	0	0	0	0	1	6559	639	23	1		1	GNLY	2	85924745	Silent	SNP	C	TCGA-OR-A5LJ-01A-11D-A29I-10	2268	85924745	157274628	66	10382										
POU3F3	5455	hgsc.bcm.edu	37	chr2	105472055	105472055	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	cactcggacgcggcaggggcTggcggcggcgggggtggcgg	24	11	0	0	rs186512421	by1000genomes	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	POU3F3-45	NM_006236	exon1	c.T87C	p.A29A	AGGGGCTGGCGGC	.	5	4	0	0	T|0.299;C|0.701	0	0	0	0	0	C	105472055	T	C	105472055	2	2	52	1	0	0	0	0	0	0	0	1	12305	1567	55	4		4	POU3F3	2	105472055	Silent	SNP	T	TCGA-OR-A5LJ-01A-11D-A29I-10	19547310	105472055	137727318	67	10383										
RGPD3	653489	bcgsc.ca	37	chr2	107049414	107049414	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	aatggcctttacttcttggcGaatcattttcagtaaagaat	7	7	3	1	rs199953271		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	RGPD3-23	NM_001144013	exon17	c.C2446T	p.R816C	CTTGGCGAATCAT	.	551	67	675	7	.	0	0	0	0	0	A	107049414	G	A	107049414	3	1	52	1	0	0	0	0	1	0	0	0	13322	1058	37	1	2858	1	RGPD3	2	107049414	Missense_Mutation	SNP	G	TCGA-OR-A5LJ-01A-11D-A29I-10	1577359	107049414	136149959	68	10384										
ST6GAL2	84620	broad.mit.edu	37	chr2	107459762	107459762	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	gcggtcaggtaatccttcatCgccttctgcaggcgcgggtt	13	12	3	0	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	ST6GAL2-191	NM_032528	exon2	c.G672A	p.A224A	CTTCATCGCCTTC	.	53	4	73	0	.	0	0	0	0	0	T	107459762	C	T	107459762	2	4	52	1	0	0	0	0	0	0	0	1	15259	871	31	1		1	ST6GAL2	2	107459762	Silent	SNP	C	TCGA-OR-A5LJ-01A-11D-A29I-10	410348	107459762	135739611	69	10385										
GCC2	9648	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	109124031	109124031	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	caaaggtgaggaagaaaatgCttcccgttcttctggatggg	13	7	2	2	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	GCC2-91	NM_181453	exon23	c.C5000T	p.A1667V	AAAATGCTTCCCG	.	228	191	381	1	.	1	0	1	0	0	T	109124031	C	T	109124031	3	4	52	1	0	0	0	0	1	0	0	0	6306	797	28	3	5090	3	GCC2	2	109124031	Missense_Mutation	SNP	C	TCGA-OR-A5LJ-01A-11D-A29I-10	1664269	109124031	134075342	70	10386										
EN1	2019	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr2	119600797	119600799	+	In_Frame_Del	DEL	TTC	TTC	-													0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	gccgcttgtcctccttctcgTtcttcttcttcttcagcttc					novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	TTC	TTC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	EN1-154	NM_001426	exon2	c.894_896del	p.298_299del	TTCTCGTTCTTCT	.	30	19	52	0	.	0	0	0	0	0	-	119600799	TTC	-	119600797	7	5	52	1	0	1	0	1	0	0	0	0	5122	1725	60	0	286	0	EN1	2	119600797	In_Frame_Del	DEL	TTC	TCGA-OR-A5LJ-01A-11D-A29I-10	10476766	119600797	123598576	71	10387										
UGGT1	56886	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	128945079	128945079	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	gcagctgtgcggattgtcccGgagtggcaggactacgacca	15	11	0	0	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	UGGT1-91	NM_020120	exon40	c.G4533A	p.P1511P	TGTCCCGGAGTGG	.	252	45	312	1	.	18	16	2	0	0	A	128945079	G	A	128945079	2	1	52	1	0	0	0	0	0	0	0	1	16979	1103	39	1		1	UGGT1	2	128945079	Silent	SNP	G	TCGA-OR-A5LJ-01A-11D-A29I-10	9344282	128945079	114254294	72	10388										
SLC4A10	57282	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr2	162813676	162813676	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	aacccaaatttctcggcattCgggagcaaagggttactggg	12	9	1	0	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	SLC4A10-229	NM_001178015	exon20	c.C2719T	p.R907W	GGCATTCGGGAGC	.	110	10	116	0	.	0	0	0	0	0	T	162813676	C	T	162813676	3	4	52	1	0	0	0	0	1	0	0	0	14686	875	31	1	2882	1	SLC4A10	2	162813676	Missense_Mutation	SNP	C	TCGA-OR-A5LJ-01A-11D-A29I-10	33868597	162813676	80385697	73	10389										
KCNH7	90134	hgsc.bcm.edu;broad.mit.edu	37	chr2	163236465	163236465	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	aggcagctcgctgaagtgcaGatggactggagtcttcaggc	15	9	2	2	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	KCNH7-95	NM_033272	exon14	c.C3029G	p.S1010C	AGTGCAGATGGAC	.	123	8	127	0	.	0	0	0	0	0	C	163236465	G	C	163236465	3	2	52	1	0	0	0	0	1	0	0	0	8058	942	33	3	573	3	KCNH7	2	163236465	Missense_Mutation	SNP	G	TCGA-OR-A5LJ-01A-11D-A29I-10	422789	163236465	79962908	74	10390										
MYO3B	140469	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr2	171509587	171509587	+	Frame_Shift_Del	DEL	T	T	-													0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	acaactcagcccacccttccTttttttcttcatcctcaaaa					novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	MYO3B-530	NM_138995	exon35	c.3982delT	p.F1328fs	CCTTCCTTTTTTT	.	94	40	122	0	.	0	0	0	0	0	-	171509587	T	-	171509587	7	5	52	1	0	1	0	1	0	0	0	0	10105	1609	56	0	4246	0	MYO3B	2	171509587	Frame_Shift_Del	DEL	T	TCGA-OR-A5LJ-01A-11D-A29I-10	8273122	171509587	71689786	75	10391										
CDCA7	83879	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	174228042	174228042	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	ggcgatgaagtttccagcgcGgagtaccaggggagcaacca	15	10	0	1	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	CDCA7-91	NM_031942	exon4	c.G473A	p.R158Q	CAGCGCGGAGTAC	.	214	29	337	0	.	0	0	0	0	0	A	174228042	G	A	174228042	3	1	52	1	0	0	0	0	1	0	0	0	3096	1116	39	1	487	1	CDCA7	2	174228042	Missense_Mutation	SNP	G	TCGA-OR-A5LJ-01A-11D-A29I-10	2718455	174228042	68971331	76	10392										
TTN	7273	bcgsc.ca	37	chr2	179543217	179543217	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	ggcacaggcttcttgggtacCtctggcactttaacgaaatg	11	10	2	0	rs35112591	byfrequency	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	TTN-636	NM_001267550	exon144	c.G33834A	p.E11278E	GGGTACCTCTGGC	.	98	6	115	0	C|0.788;T|0.212	0	0	0	0	0	T	179543217	C	T	179543217	2	4	52	1	0	0	0	0	0	0	0	1	16773	680	24	3		3	TTN	2	179543217	Silent	SNP	C	TCGA-OR-A5LJ-01A-11D-A29I-10	5315175	179543217	63656156	77	10393										
NAB1	4664	bcgsc.ca	37	chr2	191524587	191524587	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	taaaaaccaacaagaagttgGccaaaatgattggtcacatc	7	8	1	2	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	NAB1-226	NM_005966	exon4	c.G685A	p.A229T	AAGTTGGCCAAAA	.	360	10	482	2	.	8	8	0	0	0	A	191524587	G	A	191524587	3	1	52	1	0	0	0	0	1	0	0	0	10159	1203	42	3	687	3	NAB1	2	191524587	Missense_Mutation	SNP	G	TCGA-OR-A5LJ-01A-11D-A29I-10	11981370	191524587	51674786	78	10394										
ALS2CR8	79800	hgsc.bcm.edu	37	chr2	203817288	203817288	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	ttaatgcttccaagatgatcGttgccagcccaacagaaaat	7	10	0	3	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	ALS2CR8-136	NM_024744	exon6	c.G313A	p.V105I	ATGATCGTTGCCA	.	43	4	55	0	.	1	1	0	0	0	A	203817288	G	A	203817288	3	1	52	1	0	0	0	0	1	0	0	0	555	1145	40	1	323	1	ALS2CR8	2	203817288	Missense_Mutation	SNP	G	TCGA-OR-A5LJ-01A-11D-A29I-10	12292701	203817288	39382085	79	10395										
ABCA12	26154	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	215820071	215820071	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	cagccagcaagtacatccagGaaaatgttgcatacctgcag	9	11	0	0	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	ABCA12-99	NM_173076	exon43	c.C6248T	p.S2083F	ATCCAGGAAAATG	.	201	161	219	0	.	0	0	0	0	0	A	215820071	G	A	215820071	3	1	52	1	0	0	0	0	1	0	0	0	30	1174	41	3	1583	3	ABCA12	2	215820071	Missense_Mutation	SNP	G	TCGA-OR-A5LJ-01A-11D-A29I-10	12002783	215820071	27379302	80	10396										
TNS1	7145	hgsc.bcm.edu	37	chr2	218712886	218712887	+	In_Frame_Ins	INS	-	-	GCT													0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	ctggcgtggaggtgggcgagINSgctgctgctgctgctgctgc					novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	TNS1-156	NM_022648	exon17	c.1979_1980insAGC	p.P660delinsQP	GGGCGAGGCTGCT	.	66	37	35	0	.	0	0	0	0	0	GCT	218712887	-	GCT	218712886	7	5	52	1	0	1	1	0	0	0	0	0	16380	1000	35	0	3296	0	TNS1	2	218712886	In_Frame_Ins	INS	-	TCGA-OR-A5LJ-01A-11D-A29I-10	2892815	218712886	24486487	81	10397										
CCDC108	255101	hgsc.bcm.edu;bcgsc.ca	37	chr2	219892999	219892999	+	Frame_Shift_Del	DEL	G	G	-													0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	gcatggcatccaggatgtcaGgggggtagagcgtcaggccc					novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	CCDC108-94	NM_194302	exon12	c.1775delC	p.P592fs	ATGTCAGGGGGGT	.	95	78	141	1	.	0	0	0	0	0	-	219892999	G	-	219892999	7	5	52	1	0	1	0	1	0	0	0	0	2749	1000	35	0	4098	0	CCDC108	2	219892999	Frame_Shift_Del	DEL	G	TCGA-OR-A5LJ-01A-11D-A29I-10	1180113	219892999	23306374	82	10398										
LRRFIP1	9208	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	238617211	238617211	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	aagcccggctcgctgcaaaaCgggcggcccgcgcggaggct	16	15	0	0	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	LRRFIP1-153	NM_001137550	exon2	c.C121T	p.R41W	GCAAAACGGGCGG	.	304	238	246	1	.	3	1	2	0	0	T	238617211	C	T	238617211	3	4	52	1	0	0	0	0	1	0	0	0	9054	527	19	1	197	1	LRRFIP1	2	238617211	Missense_Mutation	SNP	C	TCGA-OR-A5LJ-01A-11D-A29I-10	18724212	238617211	4582162	83	10399										
GPC1	2817	broad.mit.edu;bcgsc.ca	37	chr2	241401648	241401648	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	aacgactcggagcggacgctGcaggccaccttccccggcgc	13	17	0	0	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	GPC1-153	NM_002081	exon3	c.G366A	p.L122L	GACGCTGCAGGCC	.	154	7	177	0	.	85	80	5	0	0	A	241401648	G	A	241401648	2	1	52	1	0	0	0	0	0	0	0	1	6617	1306	46	3		3	GPC1	2	241401648	Silent	SNP	G	TCGA-OR-A5LJ-01A-11D-A29I-10	2784437	241401648	1797725	84	10400										
CHL1	10752	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	447311	447311	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	tcagtgaagatggatcatttAttggtgcctacgctggatct	11	7	3	2	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	CHL1-583	NM_006614	exon28	c.A3592G	p.I1198V	TCATTTATTGGTG	.	75	62	118	0	.	4	0	4	0	0	G	447311	A	G	447311	3	3	52	1	0	0	0	0	1	0	0	0	3355	449	16	4	3694	4	CHL1	3	447311	Missense_Mutation	SNP	A	TCGA-OR-A5LJ-01A-11D-A29I-10		447311	197575119	85	10401										
IL17RE	132014	broad.mit.edu	37	chr3	9953188	9953190	+	In_Frame_Del	DEL	CTC	CTC	-													0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	cagcagctgattcttcacttCtcctcaagaatgcatgccac					novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	IL17RE-90	NM_153483	exon13	c.1254_1256del	p.418_419del	TCACTTCTCCTCA	.	276	15	262	0	.	0	0	0	0	0	-	9953190	CTC	-	9953188	7	5	52	1	0	1	0	1	0	0	0	0	7664	912	32	0	1180	0	IL17RE	3	9953188	In_Frame_Del	DEL	CTC	TCGA-OR-A5LJ-01A-11D-A29I-10	9505877	9953188	188069242	86	10402										
IRAK2	3656	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	10219666	10219666	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	acttgtggacctcctgtgccGcctggagctctaccgggctg	13	14	1	0	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	IRAK2-574	NM_001570	exon2	c.G239A	p.R80H	TGTGCCGCCTGGA	.	96	9	92	0	.	0	0	0	0	0	A	10219666	G	A	10219666	3	1	52	1	0	0	0	0	1	0	0	0	7844	1087	38	1	245	1	IRAK2	3	10219666	Missense_Mutation	SNP	G	TCGA-OR-A5LJ-01A-11D-A29I-10	266478	10219666	187802764	87	10403										
TMEM40	55287	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	12778317	12778317	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	gatggcaaagcacaggaggaCgaaatggaaaaactcatctg	12	7	2	0	rs201284335		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	TMEM40-90	NM_018306	exon9	c.G490A	p.V164I	GGAGGACGAAATG	.	460	54	398	0	C|0.999;T|0.001	1	1	0	0	0	T	12778317	C	T	12778317	3	4	52	1	0	0	0	0	1	0	0	0	16200	536	19	1	227	1	TMEM40	3	12778317	Missense_Mutation	SNP	C	TCGA-OR-A5LJ-01A-11D-A29I-10	2558651	12778317	185244113	88	10404										
EFHB	151651	bcgsc.ca	37	chr3	19961331	19961331	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	agaaaataacttaccagtacTgaaattttagatctaattcc	4	7	1	3	rs2929362	byfrequency	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	EFHB-22	NM_144715	exon3	c.A990G	p.S330S	CAGTACTGAAATT	.	164	6	120	0	T|0.442;G|0.068;C|0.104;A|0.385	0	0	0	0	0	C	19961331	T	C	19961331	2	2	52	1	0	0	0	0	0	0	0	1	4956	1567	55	4		4	EFHB	3	19961331	Silent	SNP	T	TCGA-OR-A5LJ-01A-11D-A29I-10	7183014	19961331	178061099	89	10405										
NEK10	152110	broad.mit.edu	37	chr3	27346443	27346443	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	gggctctgcacaaagtaggcGcagcaactccgctgttagtc	12	12	1	0	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	NEK10-695	NM_199347	exon13	c.C823T	p.R275C	GTAGGCGCAGCAA	.	87	3	57	0	.	0	0	0	0	0	A	27346443	G	A	27346443	3	1	52	1	0	0	0	0	1	0	0	0	10351	1087	38	1	1367	1	NEK10	3	27346443	Missense_Mutation	SNP	G	TCGA-OR-A5LJ-01A-11D-A29I-10	7385112	27346443	170675987	90	10406										
CNOT10	25904	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr3	32774948	32774948	+	Frame_Shift_Del	DEL	A	A	-													0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	aaactaaaggccttcccagcAaaaaaggaattgtacagtct					novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	CNOT10-91	NM_001256742	exon11	c.1429delA	p.K477fs	CCCAGCAAAAAAG	.	169	48	144	0	.	0	0	0	0	0	-	32774948	A	-	32774948	7	5	52	1	0	1	0	1	0	0	0	0	3624	131	5	0	1291	0	CNOT10	3	32774948	Frame_Shift_Del	DEL	A	TCGA-OR-A5LJ-01A-11D-A29I-10	5428505	32774948	165247482	91	10407										
LRRFIP2	9209	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	37107722	37107722	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	aatgctaacatacctctcccGtcttcactgtctcctgcagg	6	15	4	0	rs148787856	byfrequency	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	LRRFIP2-91	NM_006309	exon23	c.C1559T	p.T520M	TCTCCCGTCTTCA	.	146	15	79	0	G|1.000;A|0.000	3	3	0	0	0	A	37107722	G	A	37107722	3	1	52	1	0	0	0	0	1	0	0	0	9055	1145	40	1	634	1	LRRFIP2	3	37107722	Missense_Mutation	SNP	G	TCGA-OR-A5LJ-01A-11D-A29I-10	4332774	37107722	160914708	92	10408										
ITGA9	3680	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	37514857	37514857	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	ttctccagggaagaatcgggGcacgtcctgcggaaagacct	13	11	1	2	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	ITGA9-715	NM_002207	exon3	c.G326A	p.G109D	ATCGGGGCACGTC	.	274	117	184	2	.	1	1	0	0	0	A	37514857	G	A	37514857	3	1	52	1	0	0	0	0	1	0	0	0	7904	1203	42	3	336	3	ITGA9	3	37514857	Missense_Mutation	SNP	G	TCGA-OR-A5LJ-01A-11D-A29I-10	407135	37514857	160507573	93	10409										
SCN5A	6331	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	38618243	38618243	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	gtgttggtcatgtctgctgtGctgccctcggagcaactgtc	13	11	2	0	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	SCN5A-98	NM_198056	exon19	c.C3420T	p.S1140S	TGCTGTGCTGCCC	.	154	60	128	0	.	0	0	0	0	0	A	38618243	G	A	38618243	2	1	52	1	0	0	0	0	0	0	0	1	13957	1310	46	3		3	SCN5A	3	38618243	Silent	SNP	G	TCGA-OR-A5LJ-01A-11D-A29I-10	1103386	38618243	159404187	94	10410										
CTNNB1	1499	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	41266104	41266104	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	acagtcttacctggactctgGaatccattctggtgccacta	8	12	3	0	rs28931589	bycluster	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	CTNNB1-24361	NM_001098209	exon3	c.G101A	p.G34E	ACTCTGGAATCCA	.	110	97	210	0	G|1.000;T|0.000	63	3	60	0	0	A	41266104	G	A	41266104	3	1	52	1	0	0	0	0	1	0	0	0	4022	1174	41	3	107	3	CTNNB1	3	41266104	Missense_Mutation	SNP	G	TCGA-OR-A5LJ-01A-11D-A29I-10	2647861	41266104	156756326	95	10411										
ZNF445	353274	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	44488379	44488379	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	tgagaggaagaccgtgcaggCgggctacgttcagcctgtgc	16	10	1	2	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	ZNF445-91	NM_181489	exon8	c.G2784A	p.P928P	TGCAGGCGGGCTA	.	101	84	113	1	.	1	0	1	0	0	T	44488379	C	T	44488379	2	4	52	1	0	0	0	0	0	0	0	1	17955	755	27	1		1	ZNF445	3	44488379	Silent	SNP	C	TCGA-OR-A5LJ-01A-11D-A29I-10	3222275	44488379	153534051	96	10412										
ALS2CL	259173	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	46718502	46718502	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	ttccacggggaaggcacccaCgcccagctgcctgcgatggg	14	15	0	0	rs200208936		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	ALS2CL-155	NM_001190707	exon17	c.G1768A	p.V590M	CACCCACGCCCAG	.	46	35	91	0	C|0.999;T|0.000	1	0	1	0	0	T	46718502	C	T	46718502	3	4	52	1	0	0	0	0	1	0	0	0	551	536	19	1	1133	1	ALS2CL	3	46718502	Missense_Mutation	SNP	C	TCGA-OR-A5LJ-01A-11D-A29I-10	2230123	46718502	151303928	97	10413										
SCAP	22937	broad.mit.edu	37	chr3	47461048	47461048	+	Frame_Shift_Del	DEL	G	G	-													0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	aaggcagggtccgggtggctGgggggcagcatgccactagg					novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	SCAP-91	NM_012235	exon13	c.1710delC	p.P570fs	GTGGCTGGGGGGC	.	139	7	212	0	.	0	0	0	0	0	-	47461048	G	-	47461048	7	5	52	1	0	1	0	1	0	0	0	0	13912	1335	47	0	2173	0	SCAP	3	47461048	Frame_Shift_Del	DEL	G	TCGA-OR-A5LJ-01A-11D-A29I-10	742546	47461048	150561382	98	10414										
NME6	10201	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr3	48336637	48336637	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	agaatctggggccacatggcGtgctcggaacactctggtgg	15	10	2	1	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	NME6-115	NM_005793	exon5	c.C346T	p.R116C	CATGGCGTGCTCG	.	158	12	236	0	.	9	8	1	0	0	A	48336637	G	A	48336637	3	1	52	1	0	0	0	0	1	0	0	0	10524	1145	40	1	246	1	NME6	3	48336637	Missense_Mutation	SNP	G	TCGA-OR-A5LJ-01A-11D-A29I-10	875589	48336637	149685793	99	10415										
CELSR3	1951	broad.mit.edu;bcgsc.ca	37	chr3	48693263	48693263	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	ccgttgtagaagagcagcccGctctgctgcactgtcgcgaa	12	13	1	2	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	CELSR3-523	NM_001407	exon4	c.C4647T	p.S1549S	CAGCCCGCTCTGC	.	121	17	187	1	.	0	0	0	0	0	A	48693263	G	A	48693263	2	1	52	1	0	0	0	0	0	0	0	1	3229	1078	38	1		1	CELSR3	3	48693263	Silent	SNP	G	TCGA-OR-A5LJ-01A-11D-A29I-10	356626	48693263	149329167	100	10416										
GMPPB	29925	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	49760038	49760038	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	ctcctacacacctggatgcgCtgcagcactgcagggctcag	11	15	1	0	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	GMPPB-90	NM_021971	exon5	c.G552T	p.Q184H	GATGCGCTGCAGC	.	150	42	225	0	.	0	0	0	0	0	A	49760038	C	A	49760038	3	1	52	1	0	0	0	0	1	0	0	0	6515	796	28	3	627	3	GMPPB	3	49760038	Missense_Mutation	SNP	C	TCGA-OR-A5LJ-01A-11D-A29I-10	1066775	49760038	148262392	101	10417										
RBM6	10180	broad.mit.edu	37	chr3	50097175	50097175	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	taaacctggccactggaaaaCgaaggtaaggcagaagggtg	14	7	0	1	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	RBM6-280	NM_005777	exon11	c.C2224T	p.R742X	GGAAAACGAAGGT	.	123	4	191	0	.	3	3	0	0	0	T	50097175	C	T	50097175	4	4	52	1	0	0	0	0	0	1	0	0	13179	528	19	1	2262	1	RBM6	3	50097175	Nonsense_Mutation	SNP	C	TCGA-OR-A5LJ-01A-11D-A29I-10	337137	50097175	147925255	102	10418										
SEMA3B	7869	broad.mit.edu	37	chr3	50310793	50310795	+	RNA	DEL	CTT	CTT	-													0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	ccagacgacgacaaaatctaCttcttctttcgtgagacggc					novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	SEMA3B-840	.	.	.	.	AATCTACTTCTTC	.	377	8	529	0	.	0	0	0	0	0	-	50310795	CTT	-	50310793	6	5	52	0	1	1	0	1	0	0	0	0	14060	576	20	0		0	SEMA3B	3	50310793	RNA	DEL	CTT	TCGA-OR-A5LJ-01A-11D-A29I-10	213618	50310793	147711637	103	10419										
TLR9	54106	broad.mit.edu	37	chr3	52257538	52257538	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	agtgacgagggcactccatgCaggggttgggagcgtggtcg	19	8	0	1	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	TLR9-587	NM_017442	exon2	c.G794A	p.C265Y	TCCATGCAGGGGT	.	158	5	212	0	.	3	3	0	0	0	T	52257538	C	T	52257538	3	4	52	1	0	0	0	0	1	0	0	0	15995	710	25	3	2308	3	TLR9	3	52257538	Missense_Mutation	SNP	C	TCGA-OR-A5LJ-01A-11D-A29I-10	1946745	52257538	145764892	104	10420										
STAB1	23166	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	52550142	52550142	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	ggggtgtgctcaggccatggGcagtgccaggacaggttcct	17	10	1	0	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	STAB1-139	NM_015136	exon38	c.G4032A	p.G1344G	CCATGGGCAGTGC	.	122	13	106	1	.	2	2	0	0	0	A	52550142	G	A	52550142	2	1	52	1	0	0	0	0	0	0	0	1	15274	1190	42	3		3	STAB1	3	52550142	Silent	SNP	G	TCGA-OR-A5LJ-01A-11D-A29I-10	292604	52550142	145472288	105	10421										
STAB1	23166	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	52554026	52554026	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	tcacaatgctgtggcccacaGacgccgcctttcgagctctg	10	15	2	1	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	STAB1-139	NM_015136	exon51	c.G5302C	p.D1768H	CCCACAGACGCCG	.	250	109	237	2	.	5	4	1	0	0	C	52554026	G	C	52554026	3	2	52	1	0	0	0	0	1	0	0	0	15274	942	33	3	5504	3	STAB1	3	52554026	Missense_Mutation	SNP	G	TCGA-OR-A5LJ-01A-11D-A29I-10	3884	52554026	145468404	106	10422										
PBRM1	55193	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	52584594	52584594	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	tgtatgacagggggtccagcTggatgtgggccgggatatgg	19	6	0	1	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	PBRM1-575	NM_018313	exon29	c.A4419T	p.P1473P	TCCAGCTGGATGT	.	71	39	51	0	.	18	10	8	0	0	A	52584594	T	A	52584594	2	1	52	1	0	0	0	0	0	0	0	1	11520	1567	55	5		5	PBRM1	3	52584594	Silent	SNP	T	TCGA-OR-A5LJ-01A-11D-A29I-10	30568	52584594	145437836	107	10423										
ITIH1	3697	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	52821065	52821065	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	gacctccatgagcatcagggGcatggcggaccaggacggcc	15	13	1	1	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	ITIH1-93	NM_002215	exon14	c.G1838T	p.G613V	TCAGGGGCATGGC	.	297	45	276	1	.	0	0	0	0	0	T	52821065	G	T	52821065	3	4	52	1	0	0	0	0	1	0	0	0	7924	1203	42	3	1892	3	ITIH1	3	52821065	Missense_Mutation	SNP	G	TCGA-OR-A5LJ-01A-11D-A29I-10	236471	52821065	145201365	108	10424										
ITIH4	3700	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	52847474	52847474	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	agcaggaaatctccactcccGggggcccctcctggtaatcc	10	16	1	0	rs140372968	byfrequency	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	ITIH4-46	NM_002218	exon24	c.C2756T	p.P919L	ACTCCCGGGGGCC	.	197	92	179	1	G|1.000;A|0.000	12	5	7	0	0	A	52847474	G	A	52847474	3	1	52	1	0	0	0	0	1	0	0	0	7927	1116	39	1	40	1	ITIH4	3	52847474	Missense_Mutation	SNP	G	TCGA-OR-A5LJ-01A-11D-A29I-10	26409	52847474	145174956	109	10425										
ACTR8	93973	broad.mit.edu;bcgsc.ca	37	chr3	53911367	53911367	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	atatttaactgacctcttctGataggccagtgaatattgta	7	7	2	3	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	ACTR8-91	NM_022899	exon5	c.C558T	p.I186I	TCTTCTGATAGGC	.	254	12	177	0	.	6	6	0	0	0	A	53911367	G	A	53911367	2	1	52	1	0	0	0	0	0	0	0	1	217	1280	45	3		3	ACTR8	3	53911367	Silent	SNP	G	TCGA-OR-A5LJ-01A-11D-A29I-10	1063893	53911367	144111063	110	10426										
DNASE1L3	1776	ucsc.edu;bcgsc.ca	37	chr3	58196552	58196552	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	gctttccccaaaggacctgaCgttgaaggagcagatcctca	10	12	1	3	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	DNASE1L3-153	NM_004944	exon1	c.G82A	p.V28I	ACCTGACGTTGAA	.	258	110	275	2	.	2	2	0	0	0	T	58196552	C	T	58196552	3	4	52	1	0	0	0	0	1	0	0	0	4674	536	19	1	867	1	DNASE1L3	3	58196552	Missense_Mutation	SNP	C	TCGA-OR-A5LJ-01A-11D-A29I-10	4285185	58196552	139825878	111	10427										
FEZF2	55079	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr3	62355881	62355881	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	aaccctttgccgcaagtggcGcacgtgaaaggcttcttgtc	11	12	1	1	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	FEZF2-278	NM_018008	exon5	c.C1257T	p.C419C	AGTGGCGCACGTG	.	407	21	367	0	.	0	0	0	0	0	A	62355881	G	A	62355881	2	1	52	1	0	0	0	0	0	0	0	1	5845	1079	38	1		1	FEZF2	3	62355881	Silent	SNP	G	TCGA-OR-A5LJ-01A-11D-A29I-10	4159329	62355881	135666549	112	10428										
LRIG1	26018	hgsc.bcm.edu	37	chr3	66550756	66550756	+	Missense_Mutation	SNP	G	G	C													0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	ggtcaccggctccagccgaaGcaaaagcagccagagaagga					rs1403625		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	LRIG1-230	NM_015541	exon1	c.C76G	p.L26V	GCCGAAGCAAAAG	.	7	7	0	0	G|0.237;C|0.763	0	0	0	0	0	C	66550756	G	C	66550756	3	2	52	1	0	0	0	0	1	0	0	0	8971	971	34	3	3281	3	LRIG1	3	66550756	Missense_Mutation	SNP	G	TCGA-OR-A5LJ-01A-11D-A29I-10	4194875	66550756	131471674	113	10429	120	2								
LRIG1	26018	hgsc.bcm.edu	37	chr3	66550762	66550762	+	Missense_Mutation	SNP	G	G	C													0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	cggctccagccgaagcaaaaGcagccagagaaggagaaggc					rs1403626	byfrequency	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	LRIG1-230	NM_015541	exon1	c.C70G	p.L24V	GCAAAAGCAGCCA	.	10	10	0	0	G|0.252;C|0.748	0	0	0	0	0	C	66550762	G	C	66550762	3	2	52	1	0	0	0	0	1	0	0	0	8971	971	34	3	3287	3	LRIG1	3	66550762	Missense_Mutation	SNP	G	TCGA-OR-A5LJ-01A-11D-A29I-10	6	66550762	131471668	114	10430	120	2								
ROBO2	6092	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr3	77623681	77623681	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	accccagtttatccaaggctAccgagtgatgtatcgtcaga	9	11	1	2	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	ROBO2-328	NM_002942	exon14	c.A2003G	p.Y668C	AAGGCTACCGAGT	.	244	14	152	0	.	0	0	0	0	0	G	77623681	A	G	77623681	3	3	52	1	0	0	0	0	1	0	0	0	13549	391	14	4	2059	4	ROBO2	3	77623681	Missense_Mutation	SNP	A	TCGA-OR-A5LJ-01A-11D-A29I-10	11072919	77623681	120398749	115	10431										
GABRR3	200959	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	97744481	97744481	+	RNA	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	tgctcatatttctgaggccgCgctttggtactgtcatcttt	9	10	4	1	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	GABRR3-68	.	.	.	.	AGGCCGCGCTTTG	.	151	65	97	0	.	0	0	0	0	0	T	97744481	C	T	97744481	1	4	52	0	1	0	0	0	0	0	0	0	6197	755	27	1		1	GABRR3	3	97744481	RNA	SNP	C	TCGA-OR-A5LJ-01A-11D-A29I-10	20120800	97744481	100277949	116	10432										
TFG	10342	bcgsc.ca	37	chr3	100451359	100451359	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	tctatttttacagatactgtGgatggtagggaagaaaagtc	11	4	1	2	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	TFG-861	NM_006070	exon5	c.G423T	p.V141V	TACTGTGGATGGT	.	148	6	114	0	.	0	0	0	0	0	T	100451359	G	T	100451359	2	4	52	1	0	0	0	0	0	0	0	1	15843	1335	47	3		3	TFG	3	100451359	Silent	SNP	G	TCGA-OR-A5LJ-01A-11D-A29I-10	2706878	100451359	97571071	117	10433										
MYH15	22989	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr3	108219012	108219012	+	Frame_Shift_Del	DEL	G	G	-													0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	tggcaacagcaaagatgtgaGggggagcctctgatcgcctc					novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	MYH15-73	NM_014981	exon5	c.509delC	p.P170fs	ATGTGAGGGGGAG	.	150	16	91	0	.	0	0	0	0	0	-	108219012	G	-	108219012	7	5	52	1	0	1	0	1	0	0	0	0	10062	1000	35	0	5483	0	MYH15	3	108219012	Frame_Shift_Del	DEL	G	TCGA-OR-A5LJ-01A-11D-A29I-10	7767653	108219012	89803418	118	10434										
TMPRSS7	344805	broad.mit.edu	37	chr3	111766778	111766778	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	tgactccctgaccatttacgActcccttttgcccatccgga	6	16	0	2	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	TMPRSS7-70	NM_001042575	exon5	c.A545T	p.D182V	TTTACGACTCCCT	.	198	6	186	2	.	0	0	0	0	0	T	111766778	A	T	111766778	3	4	52	1	0	0	0	0	1	0	0	0	16289	275	10	5	559	5	TMPRSS7	3	111766778	Missense_Mutation	SNP	A	TCGA-OR-A5LJ-01A-11D-A29I-10	3547766	111766778	86255652	119	10435										
DRD3	1814	broad.mit.edu	37	chr3	113890760	113890760	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	gggcatagtaggcatgtgggCgggcctggctggcacctgtg	19	9	0	0	rs201554805	alternate_allele	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	DRD3-93	NM_000796	exon2	c.G80T	p.R27L	TGTGGGCGGGCCT	.	200	4	158	0	.	0	0	0	0	0	A	113890760	C	A	113890760	3	1	52	1	0	0	0	0	1	0	0	0	4769	768	27	2	1146	2	DRD3	3	113890760	Missense_Mutation	SNP	C	TCGA-OR-A5LJ-01A-11D-A29I-10	2123982	113890760	84131670	120	10436										
POPDC2	64091	broad.mit.edu	37	chr3	119379040	119379040	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	agcaggaagctccaaagaacAatgtccaggccacaggcact	10	12	0	1	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	POPDC2-90	NM_022135	exon1	c.T231C	p.I77I	AAGAACAATGTCC	.	280	7	238	0	.	0	0	0	0	0	G	119379040	A	G	119379040	2	3	52	1	0	0	0	0	0	0	0	1	12284	126	5	4		4	POPDC2	3	119379040	Silent	SNP	A	TCGA-OR-A5LJ-01A-11D-A29I-10	5488280	119379040	78643390	121	10437										
KALRN	8997	broad.mit.edu	37	chr3	124175505	124175505	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	tcccagcaagcctttcggatCgggaggtcaagctgcgggac	14	12	1	0	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	KALRN-738	NM_003947	exon23	c.C3778T	p.R1260W	TCGGATCGGGAGG	.	396	9	306	0	.	1	1	0	0	0	T	124175505	C	T	124175505	3	4	52	1	0	0	0	0	1	0	0	0	7996	875	31	1	3868	1	KALRN	3	124175505	Missense_Mutation	SNP	C	TCGA-OR-A5LJ-01A-11D-A29I-10	4796465	124175505	73846925	122	10438										
CHST13	166012	hgsc.bcm.edu	37	chr3	126261180	126261180	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	cccgtgtcgcctccgctacgAcgtcgtgggcaagttcgaga	13	14	0	1	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	CHST13-90	NM_152889	exon3	c.A785G	p.D262G	GCTACGACGTCGT	.	14	5	0	0	.	0	0	0	0	0	G	126261180	A	G	126261180	3	3	52	1	0	0	0	0	1	0	0	0	3407	275	10	4	795	4	CHST13	3	126261180	Missense_Mutation	SNP	A	TCGA-OR-A5LJ-01A-11D-A29I-10	2085675	126261180	71761250	123	10439										
PLXNA1	5361	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	126726724	126726724	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	cacacaacgtggctgactgcGccttcctggagggccgtgtc	13	14	0	1	rs149327396		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	PLXNA1-93	NM_032242	exon8	c.G2080A	p.A694T	GACTGCGCCTTCC	.	191	80	192	0	G|1.000;A|0.000	4	2	2	0	0	A	126726724	G	A	126726724	3	1	52	1	0	0	0	0	1	0	0	0	12148	1087	38	1	2110	1	PLXNA1	3	126726724	Missense_Mutation	SNP	G	TCGA-OR-A5LJ-01A-11D-A29I-10	465544	126726724	71295706	124	10440										
PLXNA1	5361	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	126752807	126752807	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	atgagcaggcgcggcggcagCggctgcggagcaagctggag	20	10	0	1	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	PLXNA1-93	NM_032242	exon31	c.C5638T	p.R1880W	CGGCAGCGGCTGC	.	467	98	266	0	.	58	49	9	0	0	T	126752807	C	T	126752807	3	4	52	1	0	0	0	0	1	0	0	0	12148	759	27	1	5760	1	PLXNA1	3	126752807	Missense_Mutation	SNP	C	TCGA-OR-A5LJ-01A-11D-A29I-10	26083	126752807	71269623	125	10441										
MRPL3	11222	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr3	131219274	131219274	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	gtcttctgtttctctcttacCtgaagtaatgtgaccacatg	7	10	4	2	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	MRPL3-90	NM_007208	exon3	c.G369A	p.Q123Q	TCTTACCTGAAGT	.	115	48	91	0	.	1	0	1	0	0	T	131219274	C	T	131219274	2	4	52	1	0	0	0	0	0	0	0	1	9821	695	24	3		3	MRPL3	3	131219274	Silent	SNP	C	TCGA-OR-A5LJ-01A-11D-A29I-10	4466467	131219274	66803156	126	10442										
EPHB1	2047	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	134911554	134911554	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	agtgaggcgagcatcatgggCcagttcgaccatcctaacat	11	11	1	1	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	EPHB1-1492	NM_004441	exon11	c.C2019T	p.G673G	CATGGGCCAGTTC	.	404	171	337	1	.	0	0	0	0	0	T	134911554	C	T	134911554	2	4	52	1	0	0	0	0	0	0	0	1	5187	726	26	3		3	EPHB1	3	134911554	Silent	SNP	C	TCGA-OR-A5LJ-01A-11D-A29I-10	3692280	134911554	63110876	127	10443										
PRR23B	389151	hgsc.bcm.edu	37	chr3	138739402	138739402	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	gcgcggggttcggggcccgcGggctcctccaatcggaggcg	19	14	0	0	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	PRR23B-135	NM_001013650	exon1	c.C102T	p.P34P	GCCCGCGGGCTCC	.	7	4	0	0	.	0	0	0	0	0	A	138739402	G	A	138739402	2	1	52	1	0	0	0	0	0	0	0	1	12627	1103	39	1		1	PRR23B	3	138739402	Silent	SNP	G	TCGA-OR-A5LJ-01A-11D-A29I-10	3827848	138739402	59283028	128	10444										
TRIM42	287015	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	140407267	140407267	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	tggagtgctggagcagacagCcagtctgtacagaacagcag	14	9	1	2	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	TRIM42-227	NM_152616	exon3	c.C1743T	p.S581S	AGACAGCCAGTCT	.	215	76	140	0	.	0	0	0	0	0	T	140407267	C	T	140407267	2	4	52	1	0	0	0	0	0	0	0	1	16555	738	26	3		3	TRIM42	3	140407267	Silent	SNP	C	TCGA-OR-A5LJ-01A-11D-A29I-10	1667865	140407267	57615163	129	10445										
GPR87	53836	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	151011993	151011993	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	tcataatatatgcgaacttcCgatcttctcacactttgcag	5	11	3	0	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	GPR87-153	NM_023915	exon3	c.G1041A	p.S347S	AACTTCCGATCTT	.	381	182	276	1	.	0	0	0	0	0	T	151011993	C	T	151011993	2	4	52	1	0	0	0	0	0	0	0	1	6736	639	23	1		1	GPR87	3	151011993	Silent	SNP	C	TCGA-OR-A5LJ-01A-11D-A29I-10	10604726	151011993	47010437	130	10446										
SI	6476	broad.mit.edu	37	chr3	164712168	164712168	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	ttgacatttcagcaaaagttTcattccaggaagcgggatct	9	8	3	1	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	SI-104	NM_001041	exon41	c.A4718G	p.E1573G	AAAGTTTCATTCC	.	325	8	236	0	.	0	0	0	0	0	C	164712168	T	C	164712168	3	2	52	1	0	0	0	0	1	0	0	0	14332	1783	62	4	797	4	SI	3	164712168	Missense_Mutation	SNP	T	TCGA-OR-A5LJ-01A-11D-A29I-10	13700175	164712168	33310262	131	10447										
LRRC34	151827	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	169511575	169511575	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	atctaccacaaatggctccaCatctgtattgtctggtttta	6	10	3	0	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	LRRC34-90	NM_001172779	exon11	c.G1243A	p.V415M	GCTCCACATCTGT	.	195	21	108	0	.	1	1	0	0	0	T	169511575	C	T	169511575	3	4	52	1	0	0	0	0	1	0	0	0	9016	478	17	3	155	3	LRRC34	3	169511575	Missense_Mutation	SNP	C	TCGA-OR-A5LJ-01A-11D-A29I-10	4799407	169511575	28510855	132	10448										
PRKCI	5584	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	169985778	169985778	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	ccacactttccaagccaagcGtttcaacagggtaaacatag	7	12	1	0	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	PRKCI-1378	NM_002740	exon5	c.G440A	p.R147H	CCAAGCGTTTCAA	.	93	33	56	0	.	0	0	0	0	0	A	169985778	G	A	169985778	3	1	52	1	0	0	0	0	1	0	0	0	12546	1145	40	1	458	1	PRKCI	3	169985778	Missense_Mutation	SNP	G	TCGA-OR-A5LJ-01A-11D-A29I-10	474203	169985778	28036652	133	10449										
FNDC3B	64778	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	172070715	172070715	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	gagccccttgatgcctacccTgattcaccttctgcgtgcct	8	16	2	2	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	FNDC3B-155	NM_001135095	exon22	c.T2637C	p.P879P	CTACCCTGATTCA	.	177	69	133	2	.	12	6	6	0	0	C	172070715	T	C	172070715	2	2	52	1	0	0	0	0	0	0	0	1	5989	1567	55	4		4	FNDC3B	3	172070715	Silent	SNP	T	TCGA-OR-A5LJ-01A-11D-A29I-10	2084937	172070715	25951715	134	10450										
USP13	8975	bcgsc.ca	37	chr3	179437819	179437819	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	attgatatgcttcatatgcaTggggtgaggtctccttttgt	11	6	2	2	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	USP13-659	NM_003940	exon7	c.T897C	p.H299H	TATGCATGGGGTG	.	126	6	70	1	.	0	0	0	0	0	C	179437819	T	C	179437819	2	2	52	1	0	0	0	0	0	0	0	1	17082	1461	51	4		4	USP13	3	179437819	Silent	SNP	T	TCGA-OR-A5LJ-01A-11D-A29I-10	7367104	179437819	18584611	135	10451										
ABCC5	10057	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	183732094	183732094	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	gaatcttcacggtctctgtgCgtcccagaagtgctggttct	11	11	4	1	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	ABCC5-137	NM_005688	exon2	c.G87A	p.T29T	TCTGTGCGTCCCA	.	130	14	93	0	.	16	14	2	0	0	T	183732094	C	T	183732094	2	4	52	1	0	0	0	0	0	0	0	1	56	755	27	1		1	ABCC5	3	183732094	Silent	SNP	C	TCGA-OR-A5LJ-01A-11D-A29I-10	4294275	183732094	14290336	136	10452										
ECE2	9718	broad.mit.edu	37	chr3	183994339	183994339	+	Frame_Shift_Del	DEL	C	C	-													0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	ccccgtagagggcggggcctCcccggacgccatggaggtgg					novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	ECE2-94	NM_001100121	exon2	c.110delC	p.S37fs	GGGCCTCCCCGGA	.	198	13	147	0	.	0	0	0	0	0	-	183994339	C	-	183994339	7	5	52	1	0	1	0	1	0	0	0	0	4901	855	30	0	896	0	ECE2	3	183994339	Frame_Shift_Del	DEL	C	TCGA-OR-A5LJ-01A-11D-A29I-10	262245	183994339	14028091	137	10453										
EIF4G1	1981	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr3	184042024	184042025	+	Frame_Shift_Del	DEL	TG	TG	-													0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	acggaaaagccaacagtgacTgtgaacttccgaaagctgtt					novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	TG	TG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	EIF4G1-344	NM_001194946	exon18	c.2529_2530del	p.843_844del	AGTGACTGTGAAC	.	376	92	298	0	.	0	0	0	0	0	-	184042025	TG	-	184042024	7	5	52	1	0	1	0	1	0	0	0	0	5049	1567	55	0	2566	0	EIF4G1	3	184042024	Frame_Shift_Del	DEL	TG	TCGA-OR-A5LJ-01A-11D-A29I-10	47685	184042024	13980406	138	10454										
EPHB3	2049	ucsc.edu;bcgsc.ca	37	chr3	184290407	184290407	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	cacggggttcatctggcggcGggatgtgcagcgggtctacg	18	10	3	0	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	EPHB3-1455	NM_004443	exon3	c.G299A	p.R100Q	GGCGGCGGGATGT	.	310	156	249	3	.	4	2	2	0	0	A	184290407	G	A	184290407	3	1	52	1	0	0	0	0	1	0	0	0	5189	1116	39	1	309	1	EPHB3	3	184290407	Missense_Mutation	SNP	G	TCGA-OR-A5LJ-01A-11D-A29I-10	248383	184290407	13732023	139	10455										
EPHB3	2049	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	184297350	184297350	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	gagtttgccaaggagatcgaCgtgtcctgcgtcaagatcga	13	9	1	2	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	EPHB3-1455	NM_004443	exon10	c.C1887T	p.D629D	GATCGACGTGTCC	.	441	47	390	0	.	10	9	1	0	0	T	184297350	C	T	184297350	2	4	52	1	0	0	0	0	0	0	0	1	5189	535	19	1		1	EPHB3	3	184297350	Silent	SNP	C	TCGA-OR-A5LJ-01A-11D-A29I-10	6943	184297350	13725080	140	10456										
LRRC15	131578	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	194080702	194080702	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	aacatgcggaagacgttcccGtccaggtcctgcagtgcgtt	12	12	0	1	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	LRRC15-71	NM_001135057	exon3	c.C1089T	p.D363D	GTTCCCGTCCAGG	.	227	108	231	0	.	0	0	0	0	0	A	194080702	G	A	194080702	2	1	52	1	0	0	0	0	0	0	0	1	8997	1136	40	1		1	LRRC15	3	194080702	Silent	SNP	G	TCGA-OR-A5LJ-01A-11D-A29I-10	9783352	194080702	3941728	141	10457										
APOD	347	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	195306326	195306326	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	ggaaagcagcagcagcagcaTcaccatcttggggctgggtg	15	10	2	0	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	APOD-516	NM_001647	exon2	c.A7C	p.M3L	GCAGCATCACCAT	.	71	27	56	0	.	11	11	0	0	0	G	195306326	T	G	195306326	3	3	52	1	0	0	0	0	1	0	0	0	801	1435	50	5	578	5	APOD	3	195306326	Missense_Mutation	SNP	T	TCGA-OR-A5LJ-01A-11D-A29I-10	1225624	195306326	2716104	142	10458										
MUC4	4585	ucsc.edu;bcgsc.ca	37	chr3	195516022	195516022	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	ctgaaggtgttgtgccactcGccccggatgaggaaggggta	16	9	0	2	rs148722108	by1000genomes	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	MUC4-90	NM_018406	exon2	c.C2429T	p.A810V	CCACTCGCCCCGG	.	213	84	193	2	G|0.999;A|0.001	0	0	0	0	0	A	195516022	G	A	195516022	3	1	52	1	0	0	0	0	1	0	0	0	10006	1087	38	1		1	MUC4	3	195516022	Missense_Mutation	SNP	G	TCGA-OR-A5LJ-01A-11D-A29I-10	209696	195516022	2506408	143	10459										
MUC4	4585	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	195516579	195516579	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	gattcctgaggagaggtgctTgtggaatgtattgttgaatg	15	3	0	3	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	MUC4-90	NM_018406	exon2	c.A1872G	p.T624T	GGTGCTTGTGGAA	.	282	117	246	0	.	0	0	0	0	0	C	195516579	T	C	195516579	2	2	52	1	0	0	0	0	0	0	0	1	10006	1799	63	4		4	MUC4	3	195516579	Silent	SNP	T	TCGA-OR-A5LJ-01A-11D-A29I-10	557	195516579	2505851	144	10460										
LRCH3	84859	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	197598289	197598289	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	gccatttggccaatcatgtgCgacctcgatctgtcccaagc	9	14	2	0	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	LRCH3-91	NM_032773	exon19	c.C2086T	p.R696X	CATGTGCGACCTC	.	334	161	249	1	.	9	7	2	0	0	T	197598289	C	T	197598289	4	4	52	1	0	0	0	0	0	1	0	0	8961	760	27	1	2160	1	LRCH3	3	197598289	Nonsense_Mutation	SNP	C	TCGA-OR-A5LJ-01A-11D-A29I-10	2081710	197598289	424141	145	10461										
LMLN	89782	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	197702954	197702954	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	agaagacttttcaggtccgtCgacctgcgggcactatctta	10	11	2	2	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	LMLN-91	NM_001136049	exon4	c.C403T	p.R135X	GTCCGTCGACCTG	.	153	69	119	0	.	1	1	0	0	0	T	197702954	C	T	197702954	4	4	52	1	0	0	0	0	0	1	0	0	8871	876	31	1	417	1	LMLN	3	197702954	Nonsense_Mutation	SNP	C	TCGA-OR-A5LJ-01A-11D-A29I-10	104665	197702954	319476	146	10462										
RGS12	6002	broad.mit.edu	37	chr4	3432439	3432439	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	ctcctgggacgaccccccccGggcagaagtctcccagcggg	13	18	1	1	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	RGS12-226	NM_002926	exon17	c.G3871A	p.G1291R	CCCCCCGGGCAGA	.	40	3	34	0	.	24	23	1	0	0	A	3432439	G	A	3432439	3	1	52	1	0	0	0	0	1	0	0	0	13330	1116	39	1	3991	1	RGS12	4	3432439	Missense_Mutation	SNP	G	TCGA-OR-A5LJ-01A-11D-A29I-10		3432439	187721837	147	10463										
HGFAC	3083	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	3444827	3444827	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	tccccttccgctacgggggcCgcatgctgcatgcctgcact	11	17	0	0	rs140691145		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	HGFAC-514	NM_001528	exon3	c.C349T	p.R117C	GGGGGCCGCATGC	.	38	31	26	0	C|1.000;T|0.000	0	0	0	0	0	T	3444827	C	T	3444827	3	4	52	1	0	0	0	0	1	0	0	0	7107	652	23	1	359	1	HGFAC	4	3444827	Missense_Mutation	SNP	C	TCGA-OR-A5LJ-01A-11D-A29I-10	12388	3444827	187709449	148	10464										
ARAP2	116984	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr4	36069850	36069851	+	Frame_Shift_Del	DEL	TT	TT	-													0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	aagctagagtccacggactcTttatcacacttttcactgag					novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	TT	TT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	ARAP2-93	NM_015230	exon33	c.4793_4794del	p.1598_1598del	GGACTCTTTATCA	.	38	34	56	0	.	0	0	0	0	0	-	36069851	TT	-	36069850	7	5	52	1	0	1	0	1	0	0	0	0	839	1606	56	0	324	0	ARAP2	4	36069850	Frame_Shift_Del	DEL	TT	TCGA-OR-A5LJ-01A-11D-A29I-10	32625023	36069850	155084426	149	10465										
TMEM165	55858	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	56283354	56283354	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	gaaggcttaaagatgagcccTgatgagggtcaagaggaact	14	6	1	5	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	TMEM165-514	NM_018475	exon3	c.T549C	p.P183P	GAGCCCTGATGAG	.	52	43	100	0	.	35	2	33	0	0	C	56283354	T	C	56283354	2	2	52	1	0	0	0	0	0	0	0	1	16117	1567	55	4		4	TMEM165	4	56283354	Silent	SNP	T	TCGA-OR-A5LJ-01A-11D-A29I-10	20213504	56283354	134870922	150	10466										
CXCL9	4283	broad.mit.edu	37	chr4	76924817	76924817	+	Frame_Shift_Del	DEL	T	T	-													0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	agaactttctttttttgatgTtttttcccattcttttgctt					novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	CXCL9-227	NM_002416	exon4	c.312delA	p.K104fs	TTGATGTTTTTTC	.	14	5	24	0	.	0	0	0	0	0	-	76924817	T	-	76924817	7	5	52	1	0	1	0	1	0	0	0	0	4095	1722	60	0	69	0	CXCL9	4	76924817	Frame_Shift_Del	DEL	T	TCGA-OR-A5LJ-01A-11D-A29I-10	20641463	76924817	114229459	151	10467										
FRAS1	80144	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	78987147	78987147	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	ttttccccacaggtgcttgtGtctatcaggattccttgttg	9	10	2	0	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	FRAS1-68	NM_001166133	exon2	c.G85A	p.V29I	GCTTGTGTCTATC	.	53	41	95	0	.	0	0	0	0	0	A	78987147	G	A	78987147	3	1	52	1	0	0	0	0	1	0	0	0	6061	1377	48	3	91	3	FRAS1	4	78987147	Missense_Mutation	SNP	G	TCGA-OR-A5LJ-01A-11D-A29I-10	2062330	78987147	112167129	152	10468										
FRAS1	80144	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr4	79366741	79366742	+	Frame_Shift_Ins	INS	-	-	A													0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	tcctattcaagacgtcctggINSaaaactacatttactacttt					novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	FRAS1-68	NM_025074	exon42	c.5731_5732insA	p.E1911fs	GTCCTGGAAAACT	.	108	13	125	0	.	0	0	0	0	0	A	79366742	-	A	79366741	7	5	52	1	0	1	1	0	0	0	0	0	6061	1175	41	0	5897	0	FRAS1	4	79366741	Frame_Shift_Ins	INS	-	TCGA-OR-A5LJ-01A-11D-A29I-10	379594	79366741	111787535	153	10469										
BMP3	651	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr4	81967503	81967503	+	Frame_Shift_Del	DEL	A	A	-													0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	ctggggcagaataccagtatAaaaaggatgaggtgtgggag					novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	BMP3-518	NM_001201	exon2	c.928delA	p.K310fs	CAGTATAAAAAGG	.	79	69	108	0	.	0	0	0	0	0	-	81967503	A	-	81967503	7	5	52	1	0	1	0	1	0	0	0	0	1462	363	13	0	934	0	BMP3	4	81967503	Frame_Shift_Del	DEL	A	TCGA-OR-A5LJ-01A-11D-A29I-10	2600762	81967503	109186773	154	10470	121	2								
BMP3	651	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	chr4	81967507	81967507	+	Missense_Mutation	SNP	A	A	T													0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	ggcagaataccagtataaaaAggatgaggtgtgggaggaga					rs138325448	alternate_allele	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	BMP3-518	NM_001201	exon2	c.A932T	p.K311M	ATAAAAAGGATGA	.	80	73	103	0	A|1.000;G|0.000	0	0	0	0	0	T	81967507	A	T	81967507	3	4	52	1	0	0	0	0	1	0	0	0	1462	72	3	5	938	5	BMP3	4	81967507	Missense_Mutation	SNP	A	TCGA-OR-A5LJ-01A-11D-A29I-10	4	81967507	109186769	155	10471	121	2								
METAP1	23173	bcgsc.ca	37	chr4	99982342	99982342	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	acctggccagatggttggacTgcggtgacaagagacggaaa	15	8	0	3	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	.	NM_015143	exon11	c.T1035G	p.T345T	TTGGACTGCGGTG	.	101	44	180	4	.	10	5	5	0	0	G	99982342	T	G	99982342	2	3	52	1	0	0	0	0	0	0	0	1	9514	1567	55	5		5	METAP1	4	99982342	Silent	SNP	T	TCGA-OR-A5LJ-01A-11D-A29I-10	18014835	99982342	91171934	156	10472										
ADH7	131	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	100349278	100349278	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	aaggttgccatctgggttgcGacaagcattgcattctctac	10	10	2	0	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	ADH7-227	NM_001166504	exon4	c.C373T	p.R125C	GGTTGCGACAAGC	.	133	106	157	0	.	0	0	0	0	0	A	100349278	G	A	100349278	3	1	52	1	0	0	0	0	1	0	0	0	313	1058	37	1	835	1	ADH7	4	100349278	Missense_Mutation	SNP	G	TCGA-OR-A5LJ-01A-11D-A29I-10	366936	100349278	90804998	157	10473										
DDIT4L	115265	bcgsc.ca	37	chr4	101108877	101108877	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	ttccaatcagtgagtaaagtTttttcttaacaagtcgaaat	6	6	2	1	rs201713115		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	DDIT4L-91	NM_145244	exon3	c.A539G	p.K180R	TAAAGTTTTTTCT	.	104	5	146	1	.	7	7	0	0	0	C	101108877	T	C	101108877	3	2	52	1	0	0	0	0	1	0	0	0	4338	1841	64	4	46	4	DDIT4L	4	101108877	Missense_Mutation	SNP	T	TCGA-OR-A5LJ-01A-11D-A29I-10	759599	101108877	90045399	158	10474										
TET2	54790	broad.mit.edu;bcgsc.ca	37	chr4	106196951	106196951	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	aacatcattcaccttctcacAtaatccataactacagtgca	2	13	3	0	rs2454206	byfrequency	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	TET2-4618	NM_001127208	exon11	c.A5284G	p.I1762V	TCTCACATAATCC	.	57	5	83	0	A|0.768;G|0.232	1	1	0	0	0	G	106196951	A	G	106196951	3	3	52	1	0	0	0	0	1	0	0	0	15807	217	8	4	5407	4	TET2	4	106196951	Missense_Mutation	SNP	A	TCGA-OR-A5LJ-01A-11D-A29I-10	5088074	106196951	84957325	159	10475										
QRFPR	84109	hgsc.bcm.edu;bcgsc.ca	37	chr4	122301511	122301513	+	In_Frame_Del	DEL	AGA	AGA	-													0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	gagcatggtgacgggaatgcAgaagaaggtgatgagcaggt					novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	AGA	AGA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	QRFPR-90	NM_198179	exon1	c.290_292del	p.97_98del	GAATGCAGAAGAA	.	134	110	142	1	.	0	0	0	0	0	-	122301513	AGA	-	122301511	7	5	52	1	0	1	0	1	0	0	0	0	12913	188	7	0	1027	0	QRFPR	4	122301511	In_Frame_Del	DEL	AGA	TCGA-OR-A5LJ-01A-11D-A29I-10	16104560	122301511	68852765	160	10476										
FBXW7	55294	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	153249473	153249473	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	gtccgatctgtagatccactAatgatgatgttgtctctcat	8	9	3	3	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	FBXW7-6296	NM_033632	exon9	c.T1305C	p.I435I	TCCACTAATGATG	.	130	111	170	2	.	3	0	3	0	0	G	153249473	A	G	153249473	2	3	52	1	0	0	0	0	0	0	0	1	5788	358	13	4		4	FBXW7	4	153249473	Silent	SNP	A	TCGA-OR-A5LJ-01A-11D-A29I-10	30947962	153249473	37904803	161	10477										
FAM198B	51313	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr4	159092445	159092445	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	gggtccttggacgccggctgCtccagagcttacgcacccgc	13	16	0	1	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	FAM198B-90	NM_016613	exon2	c.G83C	p.S28T	CGGCTGCTCCAGA	.	123	105	138	0	.	6	0	6	0	0	G	159092445	C	G	159092445	3	3	52	1	0	0	0	0	1	0	0	0	5545	797	28	3	1597	3	FAM198B	4	159092445	Missense_Mutation	SNP	C	TCGA-OR-A5LJ-01A-11D-A29I-10	5842972	159092445	32061831	162	10478										
SNX25	83891	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	186272686	186272686	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	actacctcaaggttatcgacGtgcaggggaaaaaaaattct	9	8	2	0	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	SNX25-273	NM_031953	exon14	c.G1897A	p.V633M	ATCGACGTGCAGG	.	68	49	98	0	.	4	0	4	0	0	A	186272686	G	A	186272686	3	1	52	1	0	0	0	0	1	0	0	0	14931	1145	40	1	1947	1	SNX25	4	186272686	Missense_Mutation	SNP	G	TCGA-OR-A5LJ-01A-11D-A29I-10	27180241	186272686	4881590	163	10479										
FAT1	2195	broad.mit.edu	37	chr4	187539571	187539574	+	Frame_Shift_Del	DEL	ATCT	ATCT	-													0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	ctatgttctgctcggatgagAtctatctctgttccaatagg					novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	FAT1-34	NM_005245	exon10	c.8166_8169del	p.2722_2723del	GATGAGATCTATC	.	111	8	193	0	.	0	0	0	0	0	-	187539574	ATCT	-	187539571	7	5	52	1	0	1	0	1	0	0	0	0	5708	330	12	0	5669	0	FAT1	4	187539571	Frame_Shift_Del	DEL	ATCT	TCGA-OR-A5LJ-01A-11D-A29I-10	1266885	187539571	3614705	164	10480										
LRRC14B	389257	hgsc.bcm.edu;broad.mit.edu	37	chr5	192355	192355	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	cacgtgcagcagcttctggcCcaggtgggcttcccccggct	13	16	1	0	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	LRRC14B-69	NM_001080478	exon1	c.C702A	p.A234A	TCTGGCCCAGGTG	.	159	12	13	0	.	0	0	0	0	0	A	192355	C	A	192355	2	1	52	1	0	0	0	0	0	0	0	1	8996	610	22	3		3	LRRC14B	5	192355	Silent	SNP	C	TCGA-OR-A5LJ-01A-11D-A29I-10		192355	180722905	165	10481										
DAP	1611	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	10681252	10681252	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	ggcttctggtgagccacctgCgcagccgccggggggaaatc	16	13	1	1	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	DAP-90	NM_004394	exon4	c.G225A	p.A75A	CACCTGCGCAGCC	.	94	35	64	1	.	52	24	28	0	0	T	10681252	C	T	10681252	2	4	52	1	0	0	0	0	0	0	0	1	4239	755	27	1		1	DAP	5	10681252	Silent	SNP	C	TCGA-OR-A5LJ-01A-11D-A29I-10	10488897	10681252	170234008	166	10482										
DAB2	1601	hgsc.bcm.edu;bcgsc.ca	37	chr5	39390566	39390567	+	Frame_Shift_Ins	INS	-	-	A													0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	tgttgcccggtttttatggcINSaaaaaactgatgctggcctt					novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	DAB2-227	NM_001343	exon5	c.442_443insT	p.A148fs	TTATGGCAAAAAA	.	122	37	93	1	.	0	0	0	0	0	A	39390567	-	A	39390566	7	5	52	1	0	1	1	0	0	0	0	0	4224	710	25	0	1910	0	DAB2	5	39390566	Frame_Shift_Ins	INS	-	TCGA-OR-A5LJ-01A-11D-A29I-10	28709314	39390566	141524694	167	10483										
DDX4	54514	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	55056049	55056049	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	aatggatgatggaccttctcGaagagatcatttcatgaaaa	9	6	3	3	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	DDX4-227	NM_001166533	exon4	c.G149A	p.R50Q	CTTCTCGAAGAGA	.	150	68	97	1	.	0	0	0	0	0	A	55056049	G	A	55056049	3	1	52	1	0	0	0	0	1	0	0	0	4366	1058	37	1	159	1	DDX4	5	55056049	Missense_Mutation	SNP	G	TCGA-OR-A5LJ-01A-11D-A29I-10	15665483	55056049	125859211	168	10484										
DDX4	54514	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	55063742	55063742	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	ctgcgaagataatccaacacGgaacagagggttttccaaga	10	9	0	3	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	DDX4-227	NM_001142549	exon7	c.G368T	p.R123L	CAACACGGAACAG	.	220	108	173	1	.	0	0	0	0	0	T	55063742	G	T	55063742	3	4	52	1	0	0	0	0	1	0	0	0	4366	1116	39	2	431	2	DDX4	5	55063742	Missense_Mutation	SNP	G	TCGA-OR-A5LJ-01A-11D-A29I-10	7693	55063742	125851518	169	10485										
ERCC8	1161	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr5	60224762	60224765	+	Frame_Shift_Del	DEL	TTTA	TTTA	-													0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	attctttcaacatctctgtcTttatttaattccagtcccaa					novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	TTTA	TTTA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	ERCC8-227	NM_000082	exon2	c.99_102del	p.33_34del	TCTGTCTTTATTT	.	107	44	75	0	.	0	0	0	0	0	-	60224765	TTTA	-	60224762	7	5	52	1	0	1	0	1	0	0	0	0	5232	1606	56	0	1132	0	ERCC8	5	60224762	Frame_Shift_Del	DEL	TTTA	TCGA-OR-A5LJ-01A-11D-A29I-10	5161020	60224762	120690498	170	10486										
BDP1	55814	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr5	70858262	70858262	+	Frame_Shift_Del	DEL	A	A	-													0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	tccattcaatgaaagccaggAaaaaaatcgagagtcctctg					novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	BDP1-92	NM_018429	exon38	c.7658delA	p.E2553fs	GCCAGGAAAAAAA	.	111	13	66	0	.	0	0	0	0	0	-	70858262	A	-	70858262	7	5	52	1	0	1	0	1	0	0	0	0	1396	246	9	0	7808	0	BDP1	5	70858262	Frame_Shift_Del	DEL	A	TCGA-OR-A5LJ-01A-11D-A29I-10	10633500	70858262	110056998	171	10487										
NSA2	10412	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr5	74066537	74066539	+	In_Frame_Del	DEL	AAG	AAG	-													0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	ttattcgaacaggaaagagaAagaagaaggcatggaagaga					novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	AAG	AAG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	NSA2-91	NM_001271665	exon4	c.424_426del	p.142_142del	AAGAGAAAGAAGA	.	608	256	392	0	.	0	0	0	0	0	-	74066539	AAG	-	74066537	7	5	52	1	0	1	0	1	0	0	0	0	10697	15	1	0	438	0	NSA2	5	74066537	In_Frame_Del	DEL	AAG	TCGA-OR-A5LJ-01A-11D-A29I-10	3208275	74066537	106848723	172	10488										
PDE8B	8622	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	76709039	76709039	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	cctggttccaagtgatcgaaGccaactaccactcttccaat	6	14	1	1	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	PDE8B-90	NM_003719	exon17	c.G1816A	p.A606T	ATCGAAGCCAACT	.	232	25	161	1	.	35	35	0	0	0	A	76709039	G	A	76709039	3	1	52	1	0	0	0	0	1	0	0	0	11683	971	34	3	1882	3	PDE8B	5	76709039	Missense_Mutation	SNP	G	TCGA-OR-A5LJ-01A-11D-A29I-10	2642502	76709039	104206221	173	10489										
NR2F1	7025	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	92929487	92929487	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	ccccatcgaaactctcatccGcgatatgttactgtctggga	8	13	2	0	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	NR2F1-227	NM_005654	exon3	c.G1211A	p.R404H	TCATCCGCGATAT	.	332	165	332	1	.	1	1	0	0	0	A	92929487	G	A	92929487	3	1	52	1	0	0	0	0	1	0	0	0	10656	1087	38	1	1221	1	NR2F1	5	92929487	Missense_Mutation	SNP	G	TCGA-OR-A5LJ-01A-11D-A29I-10	16220448	92929487	87985773	174	10490										
WDR36	134430	broad.mit.edu	37	chr5	110428267	110428267	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	gcggttcagcgcgctcaagcGccggttctatgtaacaacct	11	13	3	0	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	WDR36-92	NM_139281	exon1	c.G281T	p.R94L	TCAAGCGCCGGTT	.	116	10	59	2	.	0	0	0	0	0	T	110428267	G	T	110428267	3	4	52	1	0	0	0	0	1	0	0	0	17328	1087	38	2	283	2	WDR36	5	110428267	Missense_Mutation	SNP	G	TCGA-OR-A5LJ-01A-11D-A29I-10	17498780	110428267	70486993	175	10491										
SEMA6A	57556	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	115813772	115813772	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	tttatcacacaggtagagaaCgcaacatacagagagctgct	9	9	1	2	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	SEMA6A-92	NM_020796	exon14	c.G1506A	p.A502A	AGAGAACGCAACA	.	260	29	207	0	.	7	7	0	0	0	T	115813772	C	T	115813772	2	4	52	1	0	0	0	0	0	0	0	1	14074	523	19	1		1	SEMA6A	5	115813772	Silent	SNP	C	TCGA-OR-A5LJ-01A-11D-A29I-10	5385505	115813772	65101488	176	10492										
SEPT8	23176	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	132097247	132097247	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	ccggctgtgggtctgctcgcGgaggtcttccatgttcaccc	13	14	3	0	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	SEPT8-70	NM_015146	exon7	c.C865T	p.R289C	GCTCGCGGAGGTC	.	156	72	104	0	.	74	41	33	0	0	A	132097247	G	A	132097247	3	1	52	1	0	0	0	0	1	0	0	0	14105	1116	39	1	657	1	SEPT8	5	132097247	Missense_Mutation	SNP	G	TCGA-OR-A5LJ-01A-11D-A29I-10	16283475	132097247	48818013	177	10493										
FSTL4	23105	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	132569152	132569152	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	tggaacagctgctcgtggccGgaagcatggcaggtgtaatt	15	8	0	0	rs190908572		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	FSTL4-91	NM_015082	exon8	c.C972T	p.S324S	GTGGCCGGAAGCA	.	290	133	276	1	G|0.999;A|0.000	19	10	9	0	0	A	132569152	G	A	132569152	2	1	52	1	0	0	0	0	0	0	0	1	6098	1103	39	1		1	FSTL4	5	132569152	Silent	SNP	G	TCGA-OR-A5LJ-01A-11D-A29I-10	471905	132569152	48346108	178	10494										
BRD8	10902	broad.mit.edu;bcgsc.ca	37	chr5	137502305	137502305	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	cttgggacacagactctacaGggggtggcacaagtttaact	12	9	1	1	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	BRD8-91	NM_006696	exon11	c.C1118A	p.P373H	TCTACAGGGGGTG	.	266	8	208	1	.	13	11	2	0	0	T	137502305	G	T	137502305	3	4	52	1	0	0	0	0	1	0	0	0	1509	1000	35	3	2944	3	BRD8	5	137502305	Missense_Mutation	SNP	G	TCGA-OR-A5LJ-01A-11D-A29I-10	4933153	137502305	43412955	179	10495										
KDM3B	51780	broad.mit.edu	37	chr5	137708468	137708468	+	Frame_Shift_Del	DEL	C	C	-													0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	aagggtctcttgtatgggcgCcccgtgaggacccagtcctt					novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	KDM3B-542	NM_016604	exon2	c.298delC	p.P100fs	TGGGCGCCCCGTG	.	194	7	143	0	.	0	0	0	0	0	-	137708468	C	-	137708468	7	5	52	1	0	1	0	1	0	0	0	0	8148	739	26	0	304	0	KDM3B	5	137708468	Frame_Shift_Del	DEL	C	TCGA-OR-A5LJ-01A-11D-A29I-10	206163	137708468	43206792	180	10496										
EGR1	1958	broad.mit.edu	37	chr5	137803250	137803250	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	ccagaagcccttccagtgccGcatctgcatgcgcaacttca	8	16	2	1	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	EGR1-227	NM_001964	exon2	c.G1112A	p.R371H	AGTGCCGCATCTG	.	237	7	188	0	.	4	4	0	0	0	A	137803250	G	A	137803250	3	1	52	1	0	0	0	0	1	0	0	0	4982	1087	38	1	1118	1	EGR1	5	137803250	Missense_Mutation	SNP	G	TCGA-OR-A5LJ-01A-11D-A29I-10	94782	137803250	43112010	181	10497										
APBB3	10307	broad.mit.edu;bcgsc.ca	37	chr5	139939977	139939977	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	ctgcgcactggaagctctgaCggcccaggtcagcgatgagg	15	12	2	2	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	APBB3-92	NM_006051	exon11	c.G1166A	p.R389H	CTCTGACGGCCCA	.	430	12	337	0	.	117	111	6	0	0	T	139939977	C	T	139939977	3	4	52	1	0	0	0	0	1	0	0	0	762	536	19	1	323	1	APBB3	5	139939977	Missense_Mutation	SNP	C	TCGA-OR-A5LJ-01A-11D-A29I-10	2136727	139939977	40975283	182	10498										
PCDHA2	56146	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	140174695	140174695	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	caccttcgtgggccgcatcgCgcaggacctggggctggagc	16	14	0	0	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	PCDHA2-94	NM_031495	exon1	c.C146T	p.A49V	GCATCGCGCAGGA	.	158	78	46	0	.	3	3	0	0	0	T	140174695	C	T	140174695	3	4	52	1	0	0	0	0	1	0	0	0	11553	768	27	1	148	1	PCDHA2	5	140174695	Missense_Mutation	SNP	C	TCGA-OR-A5LJ-01A-11D-A29I-10	234718	140174695	40740565	183	10499										
PCDHA12	56137	broad.mit.edu;bcgsc.ca	37	chr5	140256782	140256782	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	ccggctggcagcgcaggaggCgcagttagcgagttggtacc	17	11	0	0	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	.	NM_018903	exon1	c.C1725T	p.G575G	AGGAGGCGCAGTT	.	672	332	57	2	.	0	0	0	0	0	T	140256782	C	T	140256782	2	4	52	1	0	0	0	0	0	0	0	1	11551	755	27	1		1	PCDHA12	5	140256782	Silent	SNP	C	TCGA-OR-A5LJ-01A-11D-A29I-10	82087	140256782	40658478	184	10500										
PCDHA13	56136	broad.mit.edu	37	chr5	140263345	140263346	+	Frame_Shift_Ins	INS	-	-	G													0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	ctactcgctggtggagcggcINSgggtgggcgagcgtgcgctg					novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	PCDHA13-75	NM_031865	exon1	c.1492_1493insG	p.R498fs	GAGCGGCGGGTGG	.	513	9	96	0	.	0	0	0	0	0	G	140263346	-	G	140263345	7	5	52	1	0	1	1	0	0	0	0	0	11552	759	27	0	1494	0	PCDHA13	5	140263345	Frame_Shift_Ins	INS	-	TCGA-OR-A5LJ-01A-11D-A29I-10	6563	140263345	40651915	185	10501										
PCDHB10	56126	broad.mit.edu	37	chr5	140573347	140573347	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	acatcctaattacagaaggcGcgctggacagagagatcaga	11	9	1	4	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	PCDHB10-92	NM_018930	exon1	c.G1222A	p.A408T	GAAGGCGCGCTGG	.	227	6	155	0	.	2	2	0	0	0	A	140573347	G	A	140573347	3	1	52	1	0	0	0	0	1	0	0	0	11564	1087	38	1	1224	1	PCDHB10	5	140573347	Missense_Mutation	SNP	G	TCGA-OR-A5LJ-01A-11D-A29I-10	310002	140573347	40341913	186	10502										
PCDHGA3	56112	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	140725147	140725147	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	caacactggcgtcctatacgCgctgagatccttcgactacg	9	14	0	1	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	PCDHGA3-68	NM_032011	exon1	c.C1547T	p.A516V	TATACGCGCTGAG	.	527	178	340	0	.	4	2	2	0	0	T	140725147	C	T	140725147	3	4	52	1	0	0	0	0	1	0	0	0	11584	768	27	1	1549	1	PCDHGA3	5	140725147	Missense_Mutation	SNP	C	TCGA-OR-A5LJ-01A-11D-A29I-10	151800	140725147	40190113	187	10503										
PCDHGA3	56112	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr5	140725295	140725295	+	Silent	SNP	C	C	T													0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	gcgcccgagatcctgtacccCgccctccccacagacggttc					novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	PCDHGA3-68	NM_032011	exon1	c.C1695T	p.P565P	GTACCCCGCCCTC	.	468	99	190	0	.	6	6	0	0	0	T	140725295	C	T	140725295	2	4	52	1	0	0	0	0	0	0	0	1	11584	639	23	1		1	PCDHGA3	5	140725295	Silent	SNP	C	TCGA-OR-A5LJ-01A-11D-A29I-10	148	140725295	40189965	188	10504	122	2								
PCDHGA3	56112	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr5	140725299	140725299	+	Missense_Mutation	SNP	C	C	T													0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	ccgagatcctgtaccccgccCtccccacagacggttccact					rs201819603	byfrequency	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	PCDHGA3-68	NM_032011	exon1	c.C1699T	p.L567F	CCCGCCCTCCCCA	.	454	92	183	0	C|0.999;T|0.001	8	8	0	0	0	T	140725299	C	T	140725299	3	4	52	1	0	0	0	0	1	0	0	0	11584	681	24	3	1701	3	PCDHGA3	5	140725299	Missense_Mutation	SNP	C	TCGA-OR-A5LJ-01A-11D-A29I-10	4	140725299	40189961	189	10505	122	2								
CYFIP2	26999	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	156746911	156746911	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	agcccctgcggcaggcggtaCggaagaagaagaatgtcctc	14	11	0	3	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	CYFIP2-22	NM_001037332	exon14	c.C1498T	p.R500W	GCGGTACGGAAGA	.	210	86	197	0	.	10	5	5	0	0	T	156746911	C	T	156746911	3	4	52	1	0	0	0	0	1	0	0	0	4144	527	19	1	1548	1	CYFIP2	5	156746911	Missense_Mutation	SNP	C	TCGA-OR-A5LJ-01A-11D-A29I-10	16021612	156746911	24168349	190	10506										
LCP2	3937	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	169685169	169685169	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	tggggcaaaggtctctgatgCactgtgcagaagtagaaaac	13	7	1	3	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	LCP2-23	NM_005565	exon16	c.G972A	p.V324V	CTGATGCACTGTG	.	155	18	120	0	.	0	0	0	0	0	T	169685169	C	T	169685169	2	4	52	1	0	0	0	0	0	0	0	1	8714	724	25	3		3	LCP2	5	169685169	Silent	SNP	C	TCGA-OR-A5LJ-01A-11D-A29I-10	12938258	169685169	11230091	191	10507										
STC2	8614	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr5	172744904	172744904	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	tcttcccactcgctgcttccGgaaggtccctgagccccaag	9	17	1	1	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	STC2-93	NM_003714	exon4	c.C855T	p.S285S	GCTTCCGGAAGGT	.	160	10	119	0	.	28	28	0	0	0	A	172744904	G	A	172744904	2	1	52	1	0	0	0	0	0	0	0	1	15313	1103	39	1		1	STC2	5	172744904	Silent	SNP	G	TCGA-OR-A5LJ-01A-11D-A29I-10	3059735	172744904	8170356	192	10508										
KIAA1191	57179	hgsc.bcm.edu;bcgsc.ca	37	chr5	175775319	175775320	+	Frame_Shift_Del	DEL	CT	CT	-													0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	actgggctgatgcaggctgcCtctcttcttttgttacctct					novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	CT	CT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	KIAA1191-91	NM_020444	exon7	c.499_500del	p.167_167del	GGCTGCCTCTCTT	.	155	78	117	2	.	0	0	0	0	0	-	175775320	CT	-	175775319	7	5	52	1	0	1	0	1	0	0	0	0	8233	681	24	0	429	0	KIAA1191	5	175775319	Frame_Shift_Del	DEL	CT	TCGA-OR-A5LJ-01A-11D-A29I-10	3030415	175775319	5139941	193	10509										
RNF44	22838	broad.mit.edu;bcgsc.ca	37	chr5	175959061	175959061	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	ggtggctgggtgcagcattcGggggctcccgccggcaggag	20	11	0	0	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	RNF44-658	NM_014901	exon3	c.C241T	p.R81X	GCATTCGGGGGCT	.	225	10	107	0	.	34	32	2	0	0	A	175959061	G	A	175959061	4	1	52	1	0	0	0	0	0	1	0	0	13531	1124	39	1	1093	1	RNF44	5	175959061	Nonsense_Mutation	SNP	G	TCGA-OR-A5LJ-01A-11D-A29I-10	183742	175959061	4956199	194	10510										
PROP1	5626	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	177420005	177420005	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	ccagaggctgaagcagtgagCgctcttgcttccgttgctta	12	11	1	3	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	PROP1-90	NM_006261	exon3	c.G386A	p.R129H	AGTGAGCGCTCTT	.	141	49	101	0	.	0	0	0	0	0	T	177420005	C	T	177420005	3	4	52	1	0	0	0	0	1	0	0	0	12589	768	27	1	298	1	PROP1	5	177420005	Missense_Mutation	SNP	C	TCGA-OR-A5LJ-01A-11D-A29I-10	1460944	177420005	3495255	195	10511										
ADAMTS2	9509	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	178567010	178567010	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	ttgaggatgtcaggtgtcagCcagatgcagtgtcctttaaa	12	7	2	2	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	ADAMTS2-228	NM_014244	exon11	c.G1656A	p.W552X	TGTCAGCCAGATG	.	281	147	187	0	.	0	0	0	0	0	T	178567010	C	T	178567010	4	4	52	1	0	0	0	0	0	1	0	0	265	740	26	3	2027	3	ADAMTS2	5	178567010	Nonsense_Mutation	SNP	C	TCGA-OR-A5LJ-01A-11D-A29I-10	1147005	178567010	2348250	196	10512										
TRIM41	90933	hgsc.bcm.edu;bcgsc.ca	37	chr5	180651181	180651182	+	In_Frame_Ins	INS	-	-	GGA													0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	gacagagatgagttagatcgINSggaggaggaggaggaggacg					novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	TRIM41-226	NM_033549	exon1	c.182_183insGGA	p.R61delinsRE	TAGATCGGGAGGA	.	208	54	161	0	.	0	0	0	0	0	GGA	180651182	-	GGA	180651181	7	5	52	1	0	1	1	0	0	0	0	0	16554	1116	39	0	184	0	TRIM41	5	180651181	In_Frame_Ins	INS	-	TCGA-OR-A5LJ-01A-11D-A29I-10	2084171	180651181	264079	197	10513										
RIOK1	83732	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	7393387	7393387	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	atgacattctgtttgaagacCttcaagacaatgtgaatgag	9	6	2	6	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	RIOK1-336	NM_031480	exon2	c.C127T	p.L43F	GAAGACCTTCAAG	.	84	69	130	1	.	6	0	6	0	0	T	7393387	C	T	7393387	3	4	52	1	0	0	0	0	1	0	0	0	13412	681	24	3	133	3	RIOK1	6	7393387	Missense_Mutation	SNP	C	TCGA-OR-A5LJ-01A-11D-A29I-10		7393387	163721680	198	10514										
NEDD9	4739	broad.mit.edu	37	chr6	11192636	11192636	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	ttatctctcccactggaactGaaaacacagggccttttgct	7	12	1	1	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	NEDD9-226	NM_001142393	exon5	c.C605T	p.S202L	GGAACTGAAAACA	.	105	4	130	0	.	2	2	0	0	0	A	11192636	G	A	11192636	3	1	52	1	0	0	0	0	1	0	0	0	10342	1294	45	3	1915	3	NEDD9	6	11192636	Missense_Mutation	SNP	G	TCGA-OR-A5LJ-01A-11D-A29I-10	3799249	11192636	159922431	199	10515										
HIVEP1	3096	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	12162023	12162023	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	tccggggaaggccaggcagcGtgctgcgagagatgaaaacg	17	9	0	2	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	HIVEP1-139	NM_002114	exon8	c.G6839A	p.R2280H	GGCAGCGTGCTGC	.	121	92	183	0	.	18	0	18	0	0	A	12162023	G	A	12162023	3	1	52	1	0	0	0	0	1	0	0	0	7207	1145	40	1	6865	1	HIVEP1	6	12162023	Missense_Mutation	SNP	G	TCGA-OR-A5LJ-01A-11D-A29I-10	969387	12162023	158953044	200	10516										
MYLIP	29116	broad.mit.edu	37	chr6	16145408	16145408	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	gcgagggcctcagctgccagCagacccgggtgctgcaggag	17	13	1	1	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	MYLIP-91	NM_013262	exon6	c.C1108T	p.Q370X	TGCCAGCAGACCC	.	174	5	242	0	.	2	2	0	0	0	T	16145408	C	T	16145408	4	4	52	1	0	0	0	0	0	1	0	0	10083	711	25	3	1130	3	MYLIP	6	16145408	Nonsense_Mutation	SNP	C	TCGA-OR-A5LJ-01A-11D-A29I-10	3983385	16145408	154969659	201	10517										
ATXN1	6310	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	16306908	16306908	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	aggacgctggcgggatccacGggctggccctttttaacaga	14	11	0	1	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	ATXN1-93	NM_001128164	exon8	c.C2100T	p.P700P	ATCCACGGGCTGG	.	97	81	144	1	.	0	0	0	0	0	A	16306908	G	A	16306908	2	1	52	1	0	0	0	0	0	0	0	1	1210	1103	39	1		1	ATXN1	6	16306908	Silent	SNP	G	TCGA-OR-A5LJ-01A-11D-A29I-10	161500	16306908	154808159	202	10518										
ATXN1	6310	hgsc.bcm.edu	37	chr6	16327924	16327924	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	tgctgatgctgatgctgctgCtgctgctgctgctgctgctg	14	11	0	2	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	ATXN1-93	NM_001128164	exon7	c.G618T	p.Q206H	CTGCTGCTGCTGC	.	47	4	20	0	.	2	2	0	0	0	A	16327924	C	A	16327924	3	1	52	1	0	0	0	0	1	0	0	0	1210	796	28	3	1837	3	ATXN1	6	16327924	Missense_Mutation	SNP	C	TCGA-OR-A5LJ-01A-11D-A29I-10	21016	16327924	154787143	203	10519										
PRL	5617	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	22294740	22294740	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	acctggcatcgggcagccccGccgggacagatgggcaaggg	17	13	0	1	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	PRL-90	NM_001163558	exon3	c.C102A	p.G34G	AGCCCCGCCGGGA	.	238	72	314	0	.	0	0	0	0	0	T	22294740	G	T	22294740	2	4	52	1	0	0	0	0	0	0	0	1	12560	1074	38	2		2	PRL	6	22294740	Silent	SNP	G	TCGA-OR-A5LJ-01A-11D-A29I-10	5966816	22294740	148820327	204	10520										
HFE	3077	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	26093089	26093089	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	ccaatggggatgggacctacCagggctggataaccttggct	14	10	0	0	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	HFE-90	NM_000410	exon4	c.C793A	p.Q265K	ACCTACCAGGGCT	.	286	74	439	2	.	1	1	0	0	0	A	26093089	C	A	26093089	3	1	52	1	0	0	0	0	1	0	0	0	7102	595	21	3	807	3	HFE	6	26093089	Missense_Mutation	SNP	C	TCGA-OR-A5LJ-01A-11D-A29I-10	3798349	26093089	145021978	205	10521										
BTN2A2	10385	hgsc.bcm.edu;bcgsc.ca	37	chr6	26384116	26384118	+	In_Frame_Del	DEL	CTT	CTT	-													0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	tcctcctcctgctcctcctcCttctcagcctgtgtgcactg					novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	CTT	CTT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	BTN2A2-90	NM_181531	exon2	c.67_69del	p.23_23del	CTCCTCCTTCTCA	.	114	95	169	1	.	0	0	0	0	0	-	26384118	CTT	-	26384116	7	5	52	1	0	1	0	1	0	0	0	0	1564	681	24	0	69	0	BTN2A2	6	26384116	In_Frame_Del	DEL	CTT	TCGA-OR-A5LJ-01A-11D-A29I-10	291027	26384116	144730951	206	10522										
VARS	7407	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	31747038	31747038	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	gacaccgccgatgccagggcGcccgtggcctcatccgccac	12	19	1	0	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	VARS-93	NM_006295	exon29	c.C3432T	p.G1144G	CAGGGCGCCCGTG	.	65	59	36	0	.	94	8	82	4	0	A	31747038	G	A	31747038	2	1	52	1	0	0	0	0	0	0	0	1	17161	1074	38	1		1	VARS	6	31747038	Silent	SNP	G	TCGA-OR-A5LJ-01A-11D-A29I-10	5362922	31747038	139368029	207	10523										
EHMT2	10919	ucsc.edu;bcgsc.ca	37	chr6	31860337	31860337	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	cgggcagaacctaactcctcTgactagaaaaagatcagaaa	8	10	2	5	rs535586	byfrequency	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	EHMT2-91	NM_025256	exon7	c.A711G	p.S237S	CTCCTCTGACTAG	.	62	7	95	1	T|0.179;G|0.170	0	0	0	0	0	C	31860337	T	C	31860337	2	2	52	1	0	0	0	0	0	0	0	1	4995	1567	55	4		4	EHMT2	6	31860337	Silent	SNP	T	TCGA-OR-A5LJ-01A-11D-A29I-10	113299	31860337	139254730	208	10524										
TNXB	7148	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr6	32037421	32037421	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	ctgtgggcagggtccaggccCggcacgctgacctccctgag	15	15	0	2	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	TNXB-90	NM_019105	exon15	c.G5496A	p.P1832P	CAGGCCCGGCACG	.	85	7	80	0	.	0	0	0	0	0	T	32037421	C	T	32037421	2	4	52	1	0	0	0	0	0	0	0	1	16383	639	23	1		1	TNXB	6	32037421	Silent	SNP	C	TCGA-OR-A5LJ-01A-11D-A29I-10	177084	32037421	139077646	209	10525										
ZBTB9	221504	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr6	33423520	33423522	+	In_Frame_Del	DEL	GAG	GAG	-													0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	aaattcaggtggaagaagaaGaggaggaggaggaagatgat					novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	GAG	GAG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	ZBTB9-90	NM_152735	exon2	c.643_645del	p.215_215del	GAAGAAGAGGAGG	.	61	16	79	0	.	0	0	0	0	0	-	33423522	GAG	-	33423520	7	5	52	1	0	1	0	1	0	0	0	0	17595	943	33	0	645	0	ZBTB9	6	33423520	In_Frame_Del	DEL	GAG	TCGA-OR-A5LJ-01A-11D-A29I-10	1386099	33423520	137691547	210	10526										
ITPR3	3710	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	33638975	33638975	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	cgcacaatctcatctacttcGgcttctacagcttcagcgag	7	14	4	0	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	ITPR3-1085	NM_002224	exon21	c.G2620A	p.G874S	TACTTCGGCTTCT	.	152	35	181	0	.	1	0	1	0	0	A	33638975	G	A	33638975	3	1	52	1	0	0	0	0	1	0	0	0	7943	1116	39	1	2702	1	ITPR3	6	33638975	Missense_Mutation	SNP	G	TCGA-OR-A5LJ-01A-11D-A29I-10	215455	33638975	137476092	211	10527										
BRPF3	27154	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	36179103	36179103	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	tgcagctgaaggagctgctgGagaaactggacctggtgagc	16	8	0	3	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	BRPF3-92	NM_015695	exon7	c.G2248T	p.E750X	CTGCTGGAGAAAC	.	51	47	77	0	.	3	0	3	0	0	T	36179103	G	T	36179103	4	4	52	1	0	0	0	0	0	1	0	0	1524	1175	41	3	2270	3	BRPF3	6	36179103	Nonsense_Mutation	SNP	G	TCGA-OR-A5LJ-01A-11D-A29I-10	2540128	36179103	134935964	212	10528										
LRFN2	57497	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	40400435	40400435	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	gtcctcaaaagcctcatctgCgatgccgcccagctggttgt	10	14	3	0	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	LRFN2-93	NM_020737	exon2	c.G418A	p.A140T	CATCTGCGATGCC	.	68	56	77	0	.	0	0	0	0	0	T	40400435	C	T	40400435	3	4	52	1	0	0	0	0	1	0	0	0	8965	768	27	1	1959	1	LRFN2	6	40400435	Missense_Mutation	SNP	C	TCGA-OR-A5LJ-01A-11D-A29I-10	4221332	40400435	130714632	213	10529										
UBR2	23304	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	42627467	42627467	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	ttcctgaacaaagacaattcGttacatgtatattgtgtcaa	6	7	1	2	rs147922807	byfrequency	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	UBR2-94	NM_015255	exon30	c.G3316A	p.V1106I	CAATTCGTTACAT	.	110	88	142	0	G|0.999;A|0.001	13	0	13	0	0	A	42627467	G	A	42627467	3	1	52	1	0	0	0	0	1	0	0	0	16940	1145	40	1	3580	1	UBR2	6	42627467	Missense_Mutation	SNP	G	TCGA-OR-A5LJ-01A-11D-A29I-10	2227032	42627467	128487600	214	10530										
TTBK1	84630	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	43230559	43230559	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	tctgcctggctcgccctcgcGccaggcctgctcctctcagc	10	20	2	0	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	TTBK1-353	NM_032538	exon13	c.G1457A	p.R486H	CCTCGCGCCAGGC	.	112	26	50	0	.	0	0	0	0	0	A	43230559	G	A	43230559	3	1	52	1	0	0	0	0	1	0	0	0	16714	1087	38	1	1503	1	TTBK1	6	43230559	Missense_Mutation	SNP	G	TCGA-OR-A5LJ-01A-11D-A29I-10	603092	43230559	127884508	215	10531										
ABCC10	89845	broad.mit.edu;bcgsc.ca	37	chr6	43415084	43415084	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	cagaggccatgctggtgagcGtcgagcggctggaagagtac	17	9	0	3	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	ABCC10-96	NM_001198934	exon17	c.G3643A	p.V1215I	GTGAGCGTCGAGC	.	59	4	91	1	.	13	13	0	0	0	A	43415084	G	A	43415084	3	1	52	1	0	0	0	0	1	0	0	0	50	1145	40	1	3617	1	ABCC10	6	43415084	Missense_Mutation	SNP	G	TCGA-OR-A5LJ-01A-11D-A29I-10	184525	43415084	127699983	216	10532										
CAPN11	11131	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	44144037	44144037	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	ctgattcgggtccggaatccCtggggccggattgagtggaa	16	9	0	2	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	CAPN11-136	NM_007058	exon9	c.C963A	p.P321P	GAATCCCTGGGGC	.	125	32	147	0	.	0	0	0	0	0	A	44144037	C	A	44144037	2	1	52	1	0	0	0	0	0	0	0	1	2630	668	24	3		3	CAPN11	6	44144037	Silent	SNP	C	TCGA-OR-A5LJ-01A-11D-A29I-10	728953	44144037	126971030	217	10533										
TINAG	27283	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	54185431	54185431	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	atcagtaattaaagaaaactGcaactcctggtaataaattt	5	6	1	1	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	TINAG-93	NM_014464	exon2	c.G410T	p.C137F	AAAACTGCAACTC	.	27	17	47	0	.	0	0	0	0	0	T	54185431	G	T	54185431	3	4	52	1	0	0	0	0	1	0	0	0	15958	1319	46	3	416	3	TINAG	6	54185431	Missense_Mutation	SNP	G	TCGA-OR-A5LJ-01A-11D-A29I-10	10041394	54185431	116929636	218	10534										
PHF3	23469	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	64395054	64395054	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	agaaacagccagtcaagtagCgtttcttacttagagtcaaa	8	8	3	2	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	PHF3-229	NM_015153	exon3	c.C1431T	p.S477S	AAGTAGCGTTTCT	.	136	112	187	1	.	6	0	6	0	0	T	64395054	C	T	64395054	2	4	52	1	0	0	0	0	0	0	0	1	11865	767	27	1		1	PHF3	6	64395054	Silent	SNP	C	TCGA-OR-A5LJ-01A-11D-A29I-10	10209623	64395054	106720013	219	10535										
COL19A1	1310	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	70873275	70873275	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	acatcctggtcccacaggagCaaaaggtgaaaaggtacaaa	10	9	0	1	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	COL19A1-156	NM_001858	exon36	c.C2387T	p.A796V	CAGGAGCAAAAGG	.	82	61	108	0	.	0	0	0	0	0	T	70873275	C	T	70873275	3	4	52	1	0	0	0	0	1	0	0	0	3682	710	25	3	2525	3	COL19A1	6	70873275	Missense_Mutation	SNP	C	TCGA-OR-A5LJ-01A-11D-A29I-10	6478221	70873275	100241792	220	10536										
ARMC2	84071	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	109249377	109249377	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	gcccttccccagctctgcacGgcaatggaacagtacaaggg	11	14	1	0	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	ARMC2-68	NM_032131	exon11	c.G1437A	p.T479T	CTGCACGGCAATG	.	117	59	211	0	.	1	1	0	0	0	A	109249377	G	A	109249377	2	1	52	1	0	0	0	0	0	0	0	1	952	1103	39	1		1	ARMC2	6	109249377	Silent	SNP	G	TCGA-OR-A5LJ-01A-11D-A29I-10	38376102	109249377	61865690	221	10537										
SESN1	27244	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	109308793	109308793	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	tcagagcataaaggagttctGcttgcatcctagcttctata	8	9	3	1	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	SESN1-227	NM_014454	exon10	c.C1610T	p.A537V	AGTTCTGCTTGCA	.	50	32	62	0	.	6	2	4	0	0	A	109308793	G	A	109308793	3	1	52	1	0	0	0	0	1	0	0	0	14159	1319	46	3	49	3	SESN1	6	109308793	Missense_Mutation	SNP	G	TCGA-OR-A5LJ-01A-11D-A29I-10	59416	109308793	61806274	222	10538										
GPR6	2830	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	110300812	110300812	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	gctggccattacggtggaccGctacctgtccctgtataacg	11	13	0	0	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	GPR6-90	NM_005284	exon1	c.G497A	p.R166H	TGGACCGCTACCT	.	75	60	102	0	.	0	0	0	0	0	A	110300812	G	A	110300812	3	1	52	1	0	0	0	0	1	0	0	0	6721	1087	38	1	499	1	GPR6	6	110300812	Missense_Mutation	SNP	G	TCGA-OR-A5LJ-01A-11D-A29I-10	992019	110300812	60814255	223	10539										
C6orf170	221322	broad.mit.edu;bcgsc.ca	37	chr6	121655474	121655474	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	taaaagaatctcttcggcacActccagggaaggggcacccg	11	12	1	1	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	C6orf170-92	NM_152730	exon1	c.T103G	p.C35G	CGGCACACTCCAG	.	312	21	357	1	.	0	0	0	0	0	C	121655474	A	C	121655474	3	2	52	1	0	0	0	0	1	0	0	0	2350	159	6	5	3798	5	C6orf170	6	121655474	Missense_Mutation	SNP	A	TCGA-OR-A5LJ-01A-11D-A29I-10	11354662	121655474	49459593	224	10540										
MED23	9439	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr6	131944491	131944491	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	ttataataagaaaaatatacCttgtaatccactcccccaat	2	10	0	1	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	MED23-24	NM_015979	exon5	c.G396T	p.K132N	ATATACCTTGTAA	.	20	6	30	0	.	0	0	0	0	0	A	131944491	C	A	131944491	3	1	52	1	0	0	0	0	1	0	0	0	9469	695	24	3	3839	3	MED23	6	131944491	Missense_Mutation	SNP	C	TCGA-OR-A5LJ-01A-11D-A29I-10	10289017	131944491	39170576	225	10541										
TCF21	6943	broad.mit.edu;bcgsc.ca	37	chr6	134210849	134210849	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	cttctccagactcaagaccaCcctgccctgggtgccccccg	8	20	2	2	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	TCF21-90	NM_003206	exon1	c.C314T	p.T105I	AGACCACCCTGCC	.	181	9	192	1	.	1	1	0	0	0	T	134210849	C	T	134210849	3	4	52	1	0	0	0	0	1	0	0	0	15728	507	18	3	316	3	TCF21	6	134210849	Missense_Mutation	SNP	C	TCGA-OR-A5LJ-01A-11D-A29I-10	2266358	134210849	36904218	226	10542										
PLAGL1	5325	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	144269185	144269185	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	gctgcacacacttgtacggcCgctccctggagtgggaataa	12	12	0	0	rs201696236		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	PLAGL1-91	NM_001080953	exon6	c.G89A	p.R30Q	TACGGCCGCTCCC	.	272	232	310	1	.	0	0	0	0	0	T	144269185	C	T	144269185	3	4	52	1	0	0	0	0	1	0	0	0	12048	652	23	1	1310	1	PLAGL1	6	144269185	Missense_Mutation	SNP	C	TCGA-OR-A5LJ-01A-11D-A29I-10	10058336	144269185	26845882	227	10543										
SNX9	51429	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	158349722	158349722	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	tggggcaggagcactggaagCgctgcacgggccgtaagtcc	17	11	0	0	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	SNX9-226	NM_016224	exon12	c.C1276T	p.R426C	TGGAAGCGCTGCA	.	55	48	80	0	.	0	0	0	0	0	T	158349722	C	T	158349722	3	4	52	1	0	0	0	0	1	0	0	0	14944	768	27	1	1322	1	SNX9	6	158349722	Missense_Mutation	SNP	C	TCGA-OR-A5LJ-01A-11D-A29I-10	14080537	158349722	12765345	228	10544										
FNDC1	84624	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	159660704	159660704	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	tcatcaaaaaaaccacccatCcccctaccactaccatgcag	2	18	2	0	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	FNDC1-138	NM_032532	exon14	c.C4336T	p.P1446S	ACCCATCCCCCTA	.	51	31	87	0	.	0	0	0	0	0	T	159660704	C	T	159660704	3	4	52	1	0	0	0	0	1	0	0	0	5987	855	30	3	4390	3	FNDC1	6	159660704	Missense_Mutation	SNP	C	TCGA-OR-A5LJ-01A-11D-A29I-10	1310982	159660704	11454363	229	10545										
SLC22A3	6581	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	160864677	160864677	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	aacagaaatttcggagtttcGctctgttcaggtctgtgtga	11	7	3	2	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	SLC22A3-517	NM_021977	exon9	c.G1413A	p.S471S	AGTTTCGCTCTGT	.	42	35	55	0	.	19	0	19	0	0	A	160864677	G	A	160864677	2	1	52	1	0	0	0	0	0	0	0	1	14490	1074	38	1		1	SLC22A3	6	160864677	Silent	SNP	G	TCGA-OR-A5LJ-01A-11D-A29I-10	1203973	160864677	10250390	230	10546										
PLG	5340	broad.mit.edu;bcgsc.ca	37	chr6	161139344	161139344	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	agcaacacctccaccatcttCtggtcccacctaccagtgtc	5	18	2	0	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	PLG-94	NM_000301	exon8	c.C806A	p.S269Y	CATCTTCTGGTCC	.	129	6	182	0	.	0	0	0	0	0	A	161139344	C	A	161139344	3	1	52	1	0	0	0	0	1	0	0	0	12115	913	32	3	840	3	PLG	6	161139344	Missense_Mutation	SNP	C	TCGA-OR-A5LJ-01A-11D-A29I-10	274667	161139344	9975723	231	10547										
PRR18	285800	hgsc.bcm.edu	37	chr6	166720806	166720806	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	cggccccgcgcggcagccgcGgactccacgccgcgcagcca	14	21	0	0	rs911203	byfrequency	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	PRR18-514	NM_175922	exon1	c.C825G	p.S275S	AGCCGCGGACTCC	.	5	5	0	0	G|0.796;C|0.204	0	0	0	0	0	C	166720806	G	C	166720806	2	2	52	1	0	0	0	0	0	0	0	1	12622	1103	39	2		2	PRR18	6	166720806	Silent	SNP	G	TCGA-OR-A5LJ-01A-11D-A29I-10	5581462	166720806	4394261	232	10548										
SMOC2	64094	hgsc.bcm.edu	37	chr6	168842113	168842113	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	ctgctcccgccggtgcccgcTcagaagttctcggcgctcac	11	18	3	1	rs73270928	byfrequency	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	SMOC2-91	NM_022138	exon1	c.T63G	p.A21A	GCCCGCTCAGAAG	.	25	20	5	0	T|0.654;G|0.346	0	0	0	0	0	G	168842113	T	G	168842113	2	3	52	1	0	0	0	0	0	0	0	1	14837	1538	54	5		5	SMOC2	6	168842113	Silent	SNP	T	TCGA-OR-A5LJ-01A-11D-A29I-10	2121307	168842113	2272954	233	10549										
CYP2W1	54905	hgsc.bcm.edu	37	chr7	1027032	1027032	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	ctgggccctgggcggactccCcggctggaggaccagcaggc	17	15	0	0	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	CYP2W1-90	NM_017781	exon7	c.C1008G	p.P336P	GACTCCCCGGCTG	.	45	20	7	0	.	6	0	6	0	0	G	1027032	C	G	1027032	2	3	52	1	0	0	0	0	0	0	0	1	4182	610	22	3		3	CYP2W1	7	1027032	Silent	SNP	C	TCGA-OR-A5LJ-01A-11D-A29I-10		1027032	158111631	234	10550										
IQCE	23288	hgsc.bcm.edu;broad.mit.edu	37	chr7	2641074	2641075	+	Splice_Site	INS	-	-	A													0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	ctttctttttttttttccagINSaaaaaaaaggctgttctgga					novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	IQCE-226	NM_001100390	exon17	c.1561-1->A	.	TTTCCAGAAAAAA	.	82	13	52	0	.	0	0	0	0	0	A	2641075	-	A	2641074	8	5	52	1	0	1	1	0	0	0	1	0	7827	956	33	0	1678	0	IQCE	7	2641074	Splice_Site	INS	-	TCGA-OR-A5LJ-01A-11D-A29I-10	1614042	2641074	156497589	235	10551										
USP42	84132	hgsc.bcm.edu	37	chr7	6193521	6193521	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	caagaaggctccgccgccccGcgatcccggcacccccgcta	10	21	0	1	rs61729726	byfrequency	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	USP42-659	NM_032172	exon15	c.G2336C	p.R779P	CGCCCCGCGATCC	.	13	6	0	0	G|0.456;C|0.544	3	1	2	0	0	C	6193521	G	C	6193521	3	2	52	1	0	0	0	0	1	0	0	0	17111	1087	38	2		2	USP42	7	6193521	Missense_Mutation	SNP	G	TCGA-OR-A5LJ-01A-11D-A29I-10	3552447	6193521	152945142	236	10552										
USP42	84132	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr7	6193968	6193968	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	cgagagggtcgaggacgccgCggcgccgaaagccccaggcc	17	15	0	1	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	USP42-659	NM_032172	exon15	c.C2783T	p.A928V	ACGCCGCGGCGCC	.	116	73	34	0	.	4	1	3	0	0	T	6193968	C	T	6193968	3	4	52	1	0	0	0	0	1	0	0	0	17111	768	27	1		1	USP42	7	6193968	Missense_Mutation	SNP	C	TCGA-OR-A5LJ-01A-11D-A29I-10	447	6193968	152944695	237	10553										
HOXA3	3200	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr7	27147667	27147667	+	Frame_Shift_Del	DEL	C	C	-													0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	cgctgcccagcggcccggcaCccccatagtccatggcgccc					novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	HOXA3-153	NM_030661	exon3	c.1199delG	p.G400fs	CCGGCACCCCCAT	.	76	37	23	0	.	0	0	0	0	0	-	27147667	C	-	27147667	7	5	52	1	0	1	0	1	0	0	0	0	7314	507	18	0	136	0	HOXA3	7	27147667	Frame_Shift_Del	DEL	C	TCGA-OR-A5LJ-01A-11D-A29I-10	20953699	27147667	131990996	238	10554										
PRR15	222171	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr7	29606205	29606205	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	caaatccggcagcagccgccGcaatttgaagatctcgcgct	10	14	1	2	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	PRR15-46	NM_175887	exon2	c.G260A	p.R87H	GCCGCCGCAATTT	.	88	14	57	0	.	14	11	3	0	0	A	29606205	G	A	29606205	3	1	52	1	0	0	0	0	1	0	0	0	12619	1087	38	1	262	1	PRR15	7	29606205	Missense_Mutation	SNP	G	TCGA-OR-A5LJ-01A-11D-A29I-10	2458538	29606205	129532458	239	10555										
NOD1	10392	hgsc.bcm.edu;bcgsc.ca	37	chr7	30491510	30491510	+	Frame_Shift_Del	DEL	C	C	-													0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	actcataggactgctggtcaCccccggggcccagctccggc					novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	NOD1-229	NM_006092	exon6	c.1523delG	p.G508fs	TGGTCACCCCCGG	.	94	40	92	1	.	0	0	0	0	0	-	30491510	C	-	30491510	7	5	52	1	0	1	0	1	0	0	0	0	10545	507	18	0	1374	0	NOD1	7	30491510	Frame_Shift_Del	DEL	C	TCGA-OR-A5LJ-01A-11D-A29I-10	885305	30491510	128647153	240	10556										
MYO1G	64005	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	45014805	45014805	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	gtggaagtttctttcacccaCgtgctgcttgaggacccgag	12	11	2	1	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	MYO1G-137	NM_033054	exon5	c.G586A	p.V196M	CACCCACGTGCTG	.	179	80	161	0	.	0	0	0	0	0	T	45014805	C	T	45014805	3	4	52	1	0	0	0	0	1	0	0	0	10102	536	19	1	2542	1	MYO1G	7	45014805	Missense_Mutation	SNP	C	TCGA-OR-A5LJ-01A-11D-A29I-10	14523295	45014805	114123858	241	10557										
TNS3	64759	broad.mit.edu	37	chr7	47331569	47331569	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	tgacctgccccctgcttcaaCagctcagctgctgaattggc	9	15	2	2	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	TNS3-94	NM_022748	exon27	c.G3912C	p.L1304L	CTTCAACAGCTCA	.	88	3	67	0	.	1	1	0	0	0	G	47331569	C	G	47331569	2	3	52	1	0	0	0	0	0	0	0	1	16381	465	17	3		3	TNS3	7	47331569	Silent	SNP	C	TCGA-OR-A5LJ-01A-11D-A29I-10	2316764	47331569	111807094	242	10558										
EGFR	1956	broad.mit.edu;bcgsc.ca	37	chr7	55273030	55273030	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	caatcagcctctgaaccccgCgcccagcagagacccacact	7	19	2	2	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	EGFR-44910	NM_005228	exon28	c.C3353T	p.A1118V	ACCCCGCGCCCAG	.	162	6	119	0	.	3	2	1	0	0	T	55273030	C	T	55273030	3	4	52	1	0	0	0	0	1	0	0	0	4978	768	27	1	3727	1	EGFR	7	55273030	Missense_Mutation	SNP	C	TCGA-OR-A5LJ-01A-11D-A29I-10	7941461	55273030	103865633	243	10559										
MLXIPL	51085	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr7	73008706	73008709	+	Frame_Shift_Del	DEL	CAAA	CAAA	-													0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	caccatcccgttgaaggactCaaacagaggccggatgagga					novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	CAAA	CAAA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	MLXIPL-91	NM_032951	exon16	c.2335_2338del	p.779_780del	AGGACTCAAACAG	.	61	29	61	0	.	0	0	0	0	0	-	73008709	CAAA	-	73008706	7	5	52	1	0	1	0	1	0	0	0	0	9665	835	29	0	228	0	MLXIPL	7	73008706	Frame_Shift_Del	DEL	CAAA	TCGA-OR-A5LJ-01A-11D-A29I-10	17735676	73008706	86129957	244	10560										
GTF2IRD2B	389524	bcgsc.ca	37	chr7	74538966	74538966	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	tagggacaacagtgatggtgCctgttccctatgagaagatg	13	7	0	3	rs2539083	bycluster;byfrequency	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	GTF2IRD2B-45	NM_001003795	exon5	c.C388T	p.P130S	ATGGTGCCTGTTC	.	1350	30	1243	1	C|0.500;T|0.500	9	9	0	0	0	T	74538966	C	T	74538966	3	4	52	1	0	0	0	0	1	0	0	0	6891	739	26	3	402	3	GTF2IRD2B	7	74538966	Missense_Mutation	SNP	C	TCGA-OR-A5LJ-01A-11D-A29I-10	1530260	74538966	84599697	245	10561										
DTX2	113878	broad.mit.edu	37	chr7	76111983	76111983	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	tggccaggggcaaccagctcGtggacttggcccccctgggg	16	14	0	0	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	DTX2-524	NM_001102596	exon2	c.G427A	p.V143M	CAGCTCGTGGACT	.	506	14	362	0	.	3	3	0	0	0	A	76111983	G	A	76111983	3	1	52	1	0	0	0	0	1	0	0	0	4805	1145	40	1	433	1	DTX2	7	76111983	Missense_Mutation	SNP	G	TCGA-OR-A5LJ-01A-11D-A29I-10	1573017	76111983	83026680	246	10562										
CCDC146	57639	broad.mit.edu	37	chr7	76888378	76888378	+	Frame_Shift_Del	DEL	A	A	-													0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	agatagaaaaaataacacgcAaaaaagtgtatgatttaata					novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	CCDC146-70	NM_020879	exon7	c.751delA	p.K251fs	ACACGCAAAAAAG	.	104	10	95	0	.	0	0	0	0	0	-	76888378	A	-	76888378	7	5	52	1	0	1	0	1	0	0	0	0	2786	131	5	0	773	0	CCDC146	7	76888378	Frame_Shift_Del	DEL	A	TCGA-OR-A5LJ-01A-11D-A29I-10	776395	76888378	82250285	247	10563										
KIAA1324L	222223	hgsc.bcm.edu;broad.mit.edu	37	chr7	86556094	86556096	+	In_Frame_Del	DEL	AAG	AAG	-													0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	tccaggaggacagggatggcAagaagatgatccattgttat					novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	AAG	AAG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	KIAA1324L-97	NM_001142749	exon9	c.1226_1228del	p.409_410del	GATGGCAAGAAGA	.	154	12	86	0	.	0	0	0	0	0	-	86556096	AAG	-	86556094	7	5	52	1	0	1	0	1	0	0	0	0	8245	130	5	0	1917	0	KIAA1324L	7	86556094	In_Frame_Del	DEL	AAG	TCGA-OR-A5LJ-01A-11D-A29I-10	9667716	86556094	72582569	248	10564										
DBF4	10926	hgsc.bcm.edu	37	chr7	87514295	87514295	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	atactttgttctcttctagcGagttgaagaatttctcagca	7	8	3	2	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	DBF4-253	NM_006716	exon3	c.G221A	p.R74Q	TCTAGCGAGTTGA	.	70	4	43	0	.	0	0	0	0	0	A	87514295	G	A	87514295	3	1	52	1	0	0	0	0	1	0	0	0	4254	1072	37	1	231	1	DBF4	7	87514295	Missense_Mutation	SNP	G	TCGA-OR-A5LJ-01A-11D-A29I-10	958201	87514295	71624368	249	10565										
ZNF804B	219578	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr7	88964603	88964603	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	ttctacttgtctgatgatatAacaaagagcagccaaatgca	7	8	2	3	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	ZNF804B-101	NM_181646	exon4	c.A2307G	p.I769M	TGATATAACAAAG	.	273	22	215	0	.	0	0	0	0	0	G	88964603	A	G	88964603	3	3	52	1	0	0	0	0	1	0	0	0	18208	352	13	4	2321	4	ZNF804B	7	88964603	Missense_Mutation	SNP	A	TCGA-OR-A5LJ-01A-11D-A29I-10	1450308	88964603	70174060	250	10566										
AKAP9	10142	broad.mit.edu	37	chr7	91659279	91659279	+	Frame_Shift_Del	DEL	A	A	-													0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	tgtaccctggaagttgtgtgAaaaagaatattgatggtaca					novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	AKAP9-755	NM_005751	exon15	c.4219delA	p.K1407fs	TGTGTGAAAAAGA	.	186	9	106	0	.	0	0	0	0	0	-	91659279	A	-	91659279	7	5	52	1	0	1	0	1	0	0	0	0	459	247	9	0	4277	0	AKAP9	7	91659279	Frame_Shift_Del	DEL	A	TCGA-OR-A5LJ-01A-11D-A29I-10	2694676	91659279	67479384	251	10567										
AP4M1	9179	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	99701292	99701292	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	gcagtgcagccagccgccccGtcctgtccagtcgctctgac	11	18	1	1	rs201065427		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	AP4M1-90	NM_004722	exon6	c.G520A	p.V174I	CGCCCCGTCCTGT	.	96	44	90	0	G|0.999;A|0.000	20	6	14	0	0	A	99701292	G	A	99701292	3	1	52	1	0	0	0	0	1	0	0	0	753	1145	40	1	542	1	AP4M1	7	99701292	Missense_Mutation	SNP	G	TCGA-OR-A5LJ-01A-11D-A29I-10	8042013	99701292	59437371	252	10568										
PLOD3	8985	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	100853911	100853911	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	catccgcagggtatcaccccGgatcacataggcctgggaga	12	13	2	1	rs75592752	byfrequency	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	PLOD3-92	NM_001084	exon13	c.C1402T	p.R468W	CACCCCGGATCAC	.	132	57	114	0	A|0.000;C|0.010;G|0.990	197	82	115	0	0	A	100853911	G	A	100853911	3	1	52	1	0	0	0	0	1	0	0	0	12132	1115	39	1	842	1	PLOD3	7	100853911	Missense_Mutation	SNP	G	TCGA-OR-A5LJ-01A-11D-A29I-10	1152619	100853911	58284752	253	10569										
PRKRIP1	79706	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	102038071	102038071	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	tgtttaaatgttgcaggacaAagcagttccaattccagaga	9	7	0	1	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	PRKRIP1-91	NM_024653	exon2	c.A131G	p.K44R	AGGACAAAGCAGT	.	169	83	138	0	.	2	2	0	0	0	G	102038071	A	G	102038071	3	3	52	1	0	0	0	0	1	0	0	0	12557	14	1	4	137	4	PRKRIP1	7	102038071	Missense_Mutation	SNP	A	TCGA-OR-A5LJ-01A-11D-A29I-10	1184160	102038071	57100592	254	10570										
ALKBH4	54784	bcgsc.ca	37	chr7	102098305	102098305	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	gttgcactgctcgacgggccGgaagccctccagccccgggt	14	16	0	0	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	ALKBH4-90	NM_017621	exon3	c.C445T	p.R149W	CGGGCCGGAAGCC	.	76	23	38	1	.	14	8	6	0	0	A	102098305	G	A	102098305	3	1	52	1	0	0	0	0	1	0	0	0	529	1115	39	1	467	1	ALKBH4	7	102098305	Missense_Mutation	SNP	G	TCGA-OR-A5LJ-01A-11D-A29I-10	60234	102098305	57040358	255	10571										
PSMC2	5701	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr7	103006564	103006564	+	Frame_Shift_Del	DEL	A	A	-													0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	ctctttgaaatggccagaacAaaaaaagcctgccttatctt					novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	PSMC2-90	NM_002803	exon9	c.798delA	p.T266fs	CAGAACAAAAAAA	.	78	34	52	0	.	0	0	0	0	0	-	103006564	A	-	103006564	7	5	52	1	0	1	0	1	0	0	0	0	12718	117	5	0	832	0	PSMC2	7	103006564	Frame_Shift_Del	DEL	A	TCGA-OR-A5LJ-01A-11D-A29I-10	908259	103006564	56132099	256	10572										
MLL5	55904	ucsc.edu;bcgsc.ca	37	chr7	104717504	104717504	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	ggatcgatatgaagaagcaaAtaacaaccagtacagtgagg	11	6	0	3	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	MLL5-93	NM_018682	exon9	c.A863G	p.N288S	AAGCAAATAACAA	.	350	151	222	3	.	14	5	9	0	0	G	104717504	A	G	104717504	3	3	52	1	0	0	0	0	1	0	0	0	9652	101	4	4	893	4	MLL5	7	104717504	Missense_Mutation	SNP	A	TCGA-OR-A5LJ-01A-11D-A29I-10	1710940	104717504	54421159	257	10573										
SRPK2	6733	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr7	104767476	104767479	+	Frame_Shift_Del	DEL	CAAA	CAAA	-													0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	gtcttccccagaatgtggttCaaacaaataatctcccgttg					novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	CAAA	CAAA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	SRPK2-805	NM_182692	exon14	c.1783_1786del	p.595_596del	GTGGTTCAAACAA	.	166	62	161	0	.	0	0	0	0	0	-	104767479	CAAA	-	104767476	7	5	52	1	0	1	0	1	0	0	0	0	15197	835	29	0	325	0	SRPK2	7	104767476	Frame_Shift_Del	DEL	CAAA	TCGA-OR-A5LJ-01A-11D-A29I-10	49972	104767476	54371187	258	10574										
BCAP29	55973	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	107253834	107253834	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	gatgcagtcagagagactttCgaaagaatatgatcaactcc	9	8	2	4	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	BCAP29-136	NM_018844	exon7	c.C647T	p.S216L	GACTTTCGAAAGA	.	232	101	208	1	.	72	39	33	0	0	T	107253834	C	T	107253834	3	4	52	1	0	0	0	0	1	0	0	0	1347	893	31	1	669	1	BCAP29	7	107253834	Missense_Mutation	SNP	C	TCGA-OR-A5LJ-01A-11D-A29I-10	2486358	107253834	51884829	259	10575										
NRCAM	4897	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	107820770	107820770	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	tggctaaagggctctagcccCggcaacatgccatgagtctt	11	12	2	1	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	NRCAM-156	NM_001037132	exon22	c.G2748A	p.P916P	TAGCCCCGGCAAC	.	187	100	129	0	.	35	24	11	0	0	T	107820770	C	T	107820770	2	4	52	1	0	0	0	0	0	0	0	1	10673	639	23	1		1	NRCAM	7	107820770	Silent	SNP	C	TCGA-OR-A5LJ-01A-11D-A29I-10	566936	107820770	51317893	260	10576										
WNT16	51384	broad.mit.edu;bcgsc.ca	37	chr7	120971850	120971850	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	tgtgacaccaccttgcagaaCggcggctcagcaagtgaagg	13	11	1	3	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	WNT16-1011	NM_057168	exon3	c.C465T	p.N155N	GCAGAACGGCGGC	.	245	11	175	0	.	0	0	0	0	0	T	120971850	C	T	120971850	2	4	52	1	0	0	0	0	0	0	0	1	17423	535	19	1		1	WNT16	7	120971850	Silent	SNP	C	TCGA-OR-A5LJ-01A-11D-A29I-10	13151080	120971850	38166813	261	10577										
SMO	6608	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	128843243	128843243	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	aggcctccggaatgccccccGctgctgggcagtgatccagc	13	16	0	1	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	SMO-2451	NM_005631	exon2	c.G350A	p.R117H	CCCCCCGCTGCTG	.	120	55	79	0	.	1	0	1	0	0	A	128843243	G	A	128843243	3	1	52	1	0	0	0	0	1	0	0	0	14835	1087	38	1	356	1	SMO	7	128843243	Missense_Mutation	SNP	G	TCGA-OR-A5LJ-01A-11D-A29I-10	7871393	128843243	30295420	262	10578										
TMEM209	84928	broad.mit.edu;bcgsc.ca	37	chr7	129832631	129832631	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	ggtccaacagtggtagggtaCggagaaggaggagaggggct	20	5	0	2	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	TMEM209-92	NM_032842	exon6	c.G606A	p.P202P	AGGGTACGGAGAA	.	207	8	149	0	.	18	18	0	0	0	T	129832631	C	T	129832631	2	4	52	1	0	0	0	0	0	0	0	1	16171	523	19	1		1	TMEM209	7	129832631	Silent	SNP	C	TCGA-OR-A5LJ-01A-11D-A29I-10	989388	129832631	29306032	263	10579										
AKR1D1	6718	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	137761290	137761290	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	tctcagtgctgcaagtcaccGcatacctctaagtgatggaa	9	11	3	1	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	AKR1D1-91	NM_001190907	exon1	c.G26A	p.R9H	GTCACCGCATACC	.	165	87	148	0	.	0	0	0	0	0	A	137761290	G	A	137761290	3	1	52	1	0	0	0	0	1	0	0	0	473	1087	38	1	28	1	AKR1D1	7	137761290	Missense_Mutation	SNP	G	TCGA-OR-A5LJ-01A-11D-A29I-10	7928659	137761290	21377373	264	10580										
JHDM1D	80853	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	139796487	139796487	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	tatttgcctttgtaaacacgTggaatagtgcaaccctgcca	8	10	0	0	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	JHDM1D-91	NM_030647	exon17	c.A2242T	p.T748S	AACACGTGGAATA	.	192	75	155	0	.	1	1	0	0	0	A	139796487	T	A	139796487	3	1	52	1	0	0	0	0	1	0	0	0	7969	1696	59	5	599	5	JHDM1D	7	139796487	Missense_Mutation	SNP	T	TCGA-OR-A5LJ-01A-11D-A29I-10	2035197	139796487	19342176	265	10581										
ZYX	7791	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	143087734	143087734	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	gcttccccctggacggtcacGtgctctgtcggaagtgccac	12	15	2	0	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	ZYX-90	NM_003461	exon10	c.G1678A	p.V560M	GGTCACGTGCTCT	.	180	17	165	0	.	198	174	24	0	0	A	143087734	G	A	143087734	3	1	52	1	0	0	0	0	1	0	0	0	18291	1145	40	1	1712	1	ZYX	7	143087734	Missense_Mutation	SNP	G	TCGA-OR-A5LJ-01A-11D-A29I-10	3291247	143087734	16050929	266	10582										
OR2A14	135941	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	143826996	143826996	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	gtacatggcccccaagtcccGccatcctgaggagcagcaga	11	15	0	2	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	OR2A14-90	NM_001001659	exon1	c.G791A	p.R264H	AGTCCCGCCATCC	.	224	85	187	1	.	0	0	0	0	0	A	143826996	G	A	143826996	3	1	52	1	0	0	0	0	1	0	0	0	11005	1087	38	1	793	1	OR2A14	7	143826996	Missense_Mutation	SNP	G	TCGA-OR-A5LJ-01A-11D-A29I-10	739262	143826996	15311667	267	10583										
OR2A7	401427	hgsc.bcm.edu;broad.mit.edu	37	chr7	143955878	143955878	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	gataaggggattgagcatggGattaaagaggctgtgaaaca	15	3	0	3	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	OR2A7-23	NM_001005328	exon1	c.C844A	p.P282T	GCATGGGATTAAA	.	433	23	469	0	.	1	1	0	0	0	T	143955878	G	T	143955878	3	4	52	1	0	0	0	0	1	0	0	0	11011	1174	41	3	91	3	OR2A7	7	143955878	Missense_Mutation	SNP	G	TCGA-OR-A5LJ-01A-11D-A29I-10	128882	143955878	15182785	268	10584										
NOBOX	135935	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr7	144096190	144096190	+	Frame_Shift_Del	DEL	G	G	-													0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	caggtggggggctgaagagtGggggggtcaccaccctctga					novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	NOBOX-69	NM_001080413	exon8	c.1322delC	p.P441fs	AAGAGTGGGGGGG	.	89	49	69	0	.	0	0	0	0	0	-	144096190	G	-	144096190	7	5	52	1	0	1	0	1	0	0	0	0	10541	1348	47	0	765	0	NOBOX	7	144096190	Frame_Shift_Del	DEL	G	TCGA-OR-A5LJ-01A-11D-A29I-10	140312	144096190	15042473	269	10585										
SSPO	23145	broad.mit.edu	37	chr7	149474770	149474770	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	gctctggagccagcaccagcGtccctcggccacctgtgcct	11	18	1	0	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	.	NM_198455	exon5	c.G569A	p.R190H	ACCAGCGTCCCTC	.	73	3	37	0	.	0	0	0	0	0	A	149474770	G	A	149474770	3	1	52	1	0	0	0	0	1	0	0	0	15226	1145	40	1	587	1	SSPO	7	149474770	Missense_Mutation	SNP	G	TCGA-OR-A5LJ-01A-11D-A29I-10	5378580	149474770	9663893	270	10586										
NOS3	4846	hgsc.bcm.edu;mdanderson.org	37	chr7	150706627	150706627	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	cgcgtggaggacccgccggcGcccactgagcccgtggcagt	16	16	0	1	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	NOS3-1011	NM_000603	exon20	c.G2466A	p.A822A	GCCGGCGCCCACT	.	85	41	10	0	.	18	17	1	0	0	A	150706627	G	A	150706627	2	1	52	1	0	0	0	0	0	0	0	1	10573	1074	38	1		1	NOS3	7	150706627	Silent	SNP	G	TCGA-OR-A5LJ-01A-11D-A29I-10	1231857	150706627	8432036	271	10587										
ABCF2	10061	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	150920935	150920935	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	ccatgagcttctcacactccGctgtggacagtgtatggcca	10	13	1	1	rs138611892		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	ABCF2-90	NM_005692	exon5	c.C551T	p.A184V	CACTCCGCTGTGG	.	95	40	67	0	G|1.000;A|0.000	0	0	0	0	0	A	150920935	G	A	150920935	3	1	52	1	0	0	0	0	1	0	0	0	66	1101	38	1	1405	1	ABCF2	7	150920935	Missense_Mutation	SNP	G	TCGA-OR-A5LJ-01A-11D-A29I-10	214308	150920935	8217728	272	10588										
RNF32	140545	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	156469120	156469120	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	ctgtgtgccgcaggctctgcGccgggagacccacgagtgct	15	14	1	1	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	RNF32-226	NM_001184996	exon9	c.G860A	p.R287H	CTCTGCGCCGGGA	.	176	94	57	0	.	9	3	6	0	0	A	156469120	G	A	156469120	3	1	52	1	0	0	0	0	1	0	0	0	13523	1087	38	1	890	1	RNF32	7	156469120	Missense_Mutation	SNP	G	TCGA-OR-A5LJ-01A-11D-A29I-10	5548185	156469120	2669543	273	10589										
ANGPT2	285	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr8	6371316	6371316	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	gttgctgattagtcagttgcGaaacaaactcatttcccagc	8	10	2	1	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	ANGPT2-91	NM_001147	exon7	c.C1082T	p.S361L	AGTTGCGAAACAA	.	56	45	86	0	.	7	7	0	0	0	A	6371316	G	A	6371316	3	1	52	1	0	0	0	0	1	0	0	0	611	1059	37	1	420	1	ANGPT2	8	6371316	Missense_Mutation	SNP	G	TCGA-OR-A5LJ-01A-11D-A29I-10		6371316	139992706	274	10590										
CLDN23	137075	hgsc.bcm.edu	37	chr8	8560536	8560536	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	gcagcgtcagcaccatccaaGtggagtggcccgagcccgac	13	15	1	0	rs12548737	byfrequency	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	.	NM_194284	exon1	c.G628A	p.V210M	ATCCAAGTGGAGT	.	6	6	0	0	G|0.907;A|0.093	2	0	2	0	0	A	8560536	G	A	8560536	3	1	52	1	0	0	0	0	1	0	0	0	3490	1029	36	3	630	3	CLDN23	8	8560536	Missense_Mutation	SNP	G	TCGA-OR-A5LJ-01A-11D-A29I-10	2189220	8560536	137803486	275	10591										
PDLIM2	64236	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	22447189	22447189	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	gcaggaaaatcgcgagggacGggcggccccccgacagtcca	15	14	0	0	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	PDLIM2-90	NM_021630	exon8	c.G1448A	p.R483Q	AGGGACGGGCGGC	.	183	152	295	2	.	30	1	29	0	0	A	22447189	G	A	22447189	3	1	52	1	0	0	0	0	1	0	0	0	11709	1116	39	1	724	1	PDLIM2	8	22447189	Missense_Mutation	SNP	G	TCGA-OR-A5LJ-01A-11D-A29I-10	13886653	22447189	123916833	276	10592										
CDCA2	157313	bcgsc.ca	37	chr8	25365209	25365209	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	gggaagggagagagctctctGactgccttggaaaggattga	16	6	1	3	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	CDCA2-90	NM_152562	exon15	c.G3027T	p.L1009L	CTCTCTGACTGCC	.	60	4	76	0	.	7	7	0	0	0	T	25365209	G	T	25365209	2	4	52	1	0	0	0	0	0	0	0	1	3092	1277	45	3		3	CDCA2	8	25365209	Silent	SNP	G	TCGA-OR-A5LJ-01A-11D-A29I-10	2918020	25365209	120998813	277	10593										
CHRNA2	1135	bcgsc.ca	37	chr8	27328511	27328511	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	acaaacactcacctgctgggGtcagaaggagccaccacagg	11	13	2	1	rs2472553	byfrequency	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	CHRNA2-91	NM_000742	exon2	c.C65T	p.T22I	GCTGGGGTCAGAA	.	209	8	245	0	G|0.819;A|0.181	0	0	0	0	0	A	27328511	G	A	27328511	3	1	52	1	0	0	0	0	1	0	0	0	3389	1261	44	3	1548	3	CHRNA2	8	27328511	Missense_Mutation	SNP	G	TCGA-OR-A5LJ-01A-11D-A29I-10	1963302	27328511	119035511	278	10594										
UNC5D	137970	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr8	35608159	35608159	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	tgccttttggacccctttgcGtgtcatgtgctcctggacag	11	12	1	0	rs145027081	alternate_allele	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	UNC5D-96	NM_080872	exon13	c.G1995A	p.A665A	CTTTGCGTGTCAT	.	186	145	248	0	G|1.000;C|0.000	0	0	0	0	0	A	35608159	G	A	35608159	2	1	52	1	0	0	0	0	0	0	0	1	17033	1132	40	1		1	UNC5D	8	35608159	Silent	SNP	G	TCGA-OR-A5LJ-01A-11D-A29I-10	8279648	35608159	110755863	279	10595										
BRF2	55290	broad.mit.edu;bcgsc.ca	37	chr8	37702689	37702689	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	atcttctctttgtcttccacGtatttggctggcacagaagg	9	10	3	1	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	BRF2-90	NM_018310	exon4	c.C579T	p.Y193Y	TTCCACGTATTTG	.	147	8	234	1	.	10	10	0	0	0	A	37702689	G	A	37702689	2	1	52	1	0	0	0	0	0	0	0	1	1514	1140	40	1		1	BRF2	8	37702689	Silent	SNP	G	TCGA-OR-A5LJ-01A-11D-A29I-10	2094530	37702689	108661333	280	10596										
BAG4	9530	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr8	38067995	38067995	+	Frame_Shift_Del	DEL	A	A	-													0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	ggccatactggaaaaattagAaaaaaaaggattatgaaagg					novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	BAG4-228	NM_004874	exon5	c.1358delA	p.E453fs	AATTAGAAAAAAA	.	54	29	74	0	.	0	0	0	0	0	-	38067995	A	-	38067995	7	5	52	1	0	1	0	1	0	0	0	0	1290	246	9	0	1376	0	BAG4	8	38067995	Frame_Shift_Del	DEL	A	TCGA-OR-A5LJ-01A-11D-A29I-10	365306	38067995	108296027	281	10597										
WHSC1L1	54904	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr8	38162210	38162210	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	ggaggatactaacatgcttcCggccgcaatgcaagcatctc	10	12	1	0	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	WHSC1L1-658	NM_023034	exon14	c.G2506A	p.G836R	TGCTTCCGGCCGC	.	57	45	76	0	.	1	0	1	0	0	T	38162210	C	T	38162210	3	4	52	1	0	0	0	0	1	0	0	0	17401	661	23	1	1851	1	WHSC1L1	8	38162210	Missense_Mutation	SNP	C	TCGA-OR-A5LJ-01A-11D-A29I-10	94215	38162210	108201812	282	10598										
HOOK3	84376	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr8	42823193	42823193	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	tatctaaactagaaggtcaaGtagaatcttataaaaagaag	7	4	3	3	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	HOOK3-154	NM_032410	exon11	c.G958C	p.V320L	GGTCAAGTAGAAT	.	153	27	258	0	.	4	4	0	0	0	C	42823193	G	C	42823193	3	2	52	1	0	0	0	0	1	0	0	0	7305	1029	36	3	1000	3	HOOK3	8	42823193	Missense_Mutation	SNP	G	TCGA-OR-A5LJ-01A-11D-A29I-10	4660983	42823193	103540829	283	10599										
CHD7	55636	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	61743055	61743055	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	tcacatttctttccaaaggcGgtggtcaagctaacgtacct	8	11	3	0	rs190548814		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	CHD7-141	NM_017780	exon15	c.G3697A	p.G1233S	AAAGGCGGTGGTC	.	115	33	186	0	G|0.999;A|0.001	0	0	0	0	0	A	61743055	G	A	61743055	3	1	52	1	0	0	0	0	1	0	0	0	3336	1116	39	1	3751	1	CHD7	8	61743055	Missense_Mutation	SNP	G	TCGA-OR-A5LJ-01A-11D-A29I-10	18919862	61743055	84620967	284	10600										
BHLHE22	27319	hgsc.bcm.edu	37	chr8	65493532	65493532	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	gtcctcctcctcgtcgccccTgggctgcttcgagccggctg	12	18	0	0	rs62519835		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	BHLHE22-90	NM_152414	exon1	c.T185A	p.L62Q	CGCCCCTGGGCTG	.	8	8	0	0	T|0.935;A|0.065	0	0	0	0	0	A	65493532	T	A	65493532	3	1	52	1	0	0	0	0	1	0	0	0	1422	1580	55	5	187	5	BHLHE22	8	65493532	Missense_Mutation	SNP	T	TCGA-OR-A5LJ-01A-11D-A29I-10	3750477	65493532	80870490	285	10601										
TRIM55	84675	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr8	67049359	67049359	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	agtgatggcatcgccatcctCgtgggcagcaacgatcgagt	13	11	0	1	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	TRIM55-230	NM_184086	exon4	c.C537T	p.L179L	CATCCTCGTGGGC	.	92	19	127	0	.	0	0	0	0	0	T	67049359	C	T	67049359	2	4	52	1	0	0	0	0	0	0	0	1	16567	871	31	1		1	TRIM55	8	67049359	Silent	SNP	C	TCGA-OR-A5LJ-01A-11D-A29I-10	1555827	67049359	79314663	286	10602										
CA3	761	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr8	86354416	86354416	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	ggatggagtcaagtatgcagCggaggtaagaggaactgcca	16	6	1	1	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	CA3-514	NM_005181	exon3	c.C347T	p.A116V	ATGCAGCGGAGGT	.	114	15	91	0	.	0	0	0	0	0	T	86354416	C	T	86354416	3	4	52	1	0	0	0	0	1	0	0	0	2523	768	27	1	357	1	CA3	8	86354416	Missense_Mutation	SNP	C	TCGA-OR-A5LJ-01A-11D-A29I-10	19305057	86354416	60009606	287	10603										
POP1	10940	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr8	99146235	99146235	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	agaggaagaaatactaaaggCgctttctggaatgtgtaaca	11	5	1	2	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	POP1-154	NM_001145860	exon6	c.C794T	p.A265V	TAAAGGCGCTTTC	.	140	66	124	0	.	1	0	1	0	0	T	99146235	C	T	99146235	3	4	52	1	0	0	0	0	1	0	0	0	12280	768	27	1	812	1	POP1	8	99146235	Missense_Mutation	SNP	C	TCGA-OR-A5LJ-01A-11D-A29I-10	12791819	99146235	47217787	288	10604										
UBR5	51366	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr8	103297999	103297999	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	ggatcaatataaatcaaaccCgctgaacttgctataaggaa	7	8	2	1	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	UBR5-761	NM_015902	exon39	c.G5226A	p.A1742A	CAAACCCGCTGAA	.	75	33	63	0	.	2	0	2	0	0	T	103297999	C	T	103297999	2	4	52	1	0	0	0	0	0	0	0	1	16943	639	23	1		1	UBR5	8	103297999	Silent	SNP	C	TCGA-OR-A5LJ-01A-11D-A29I-10	4151764	103297999	43066023	289	10605										
ZFPM2	23414	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr8	106813889	106813889	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	tgtctgaactggtgcatcggCgactgaggcatggcagtagt	15	8	1	2	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	ZFPM2-139	NM_012082	exon8	c.C1579T	p.R527X	CATCGGCGACTGA	.	54	27	35	0	.	0	0	0	0	0	T	106813889	C	T	106813889	4	4	52	1	0	0	0	0	0	1	0	0	17695	760	27	1	1609	1	ZFPM2	8	106813889	Nonsense_Mutation	SNP	C	TCGA-OR-A5LJ-01A-11D-A29I-10	3515890	106813889	39550133	290	10606										
TRPS1	7227	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr8	116616259	116616259	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	gggactcatgcacactttcaTagtgaaagaggagtacatct	10	8	3	2	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	TRPS1-229	NM_014112	exon4	c.A1937G	p.Y646C	CTTTCATAGTGAA	.	268	15	168	0	.	2	2	0	0	0	C	116616259	T	C	116616259	3	2	52	1	0	0	0	0	1	0	0	0	16631	1406	49	4	1963	4	TRPS1	8	116616259	Missense_Mutation	SNP	T	TCGA-OR-A5LJ-01A-11D-A29I-10	9802370	116616259	29747763	291	10607										
COLEC10	10584	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr8	120101975	120101975	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	gaaagcatggcaaagtgggaCgcatggggccgaaaggtaac	16	7	0	0	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	COLEC10-229	NM_006438	exon2	c.C205T	p.R69C	GTGGGACGCATGG	.	270	18	212	0	.	0	0	0	0	0	T	120101975	C	T	120101975	3	4	52	1	0	0	0	0	1	0	0	0	3716	536	19	1	211	1	COLEC10	8	120101975	Missense_Mutation	SNP	C	TCGA-OR-A5LJ-01A-11D-A29I-10	3485716	120101975	26262047	292	10608										
MAL2	114569	hgsc.bcm.edu	37	chr8	120220776	120220776	+	Splice_Site	DEL	G	G	-													0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	cgtgtccttcccgccgccccGgggtcaccctgcccgccggc					novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	.	NM_052886	exon1	c.64+1G>-	.	CGCCCCGGGGTCA	.	14	14	0	0	.	0	0	0	0	0	-	120220776	G	-	120220776	8	5	52	1	0	1	0	1	0	0	1	0	9228	1116	39	0	67	0	MAL2	8	120220776	Splice_Site	DEL	G	TCGA-OR-A5LJ-01A-11D-A29I-10	118801	120220776	26143246	293	10609										
MTBP	27085	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	121458716	121458716	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	cacctcttgaaaagaagcatTagtgcttcaattaatccaga	6	9	2	3	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	MTBP-228	NM_022045	exon2	c.T162C	p.I54I	AAGCATTAGTGCT	.	74	10	55	0	.	2	2	0	0	0	C	121458716	T	C	121458716	2	2	52	1	0	0	0	0	0	0	0	1	9940	1742	61	4		4	MTBP	8	121458716	Silent	SNP	T	TCGA-OR-A5LJ-01A-11D-A29I-10	1237940	121458716	24905306	294	10610										
FER1L6	654463	ucsc.edu;bcgsc.ca	37	chr8	125015418	125015418	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	cctctgcaggtaattttggaAacctgattgatggaggatcc	11	8	1	2	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	FER1L6-100	NM_001039112	exon13	c.A1531G	p.N511D	TTTGGAAACCTGA	.	408	199	343	2	.	0	0	0	0	0	G	125015418	A	G	125015418	3	3	52	1	0	0	0	0	1	0	0	0	5834	14	1	4	1577	4	FER1L6	8	125015418	Missense_Mutation	SNP	A	TCGA-OR-A5LJ-01A-11D-A29I-10	3556702	125015418	21348604	295	10611										
TG	7038	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr8	133913766	133913766	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	cggagaagaggtgcctgggaCgcgcgtgaccgggggccagc	20	11	0	3	rs201453011		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	TG-145	NM_003235	exon16	c.C3602T	p.T1201M	CTGGGACGCGCGT	.	210	106	196	0	C|0.999;T|0.001	0	0	0	0	0	T	133913766	C	T	133913766	3	4	52	1	0	0	0	0	1	0	0	0	15850	536	19	1	3664	1	TG	8	133913766	Missense_Mutation	SNP	C	TCGA-OR-A5LJ-01A-11D-A29I-10	8898348	133913766	12450256	296	10612										
FAM135B	51059	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr8	139164439	139164439	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	acttagtgagtgccacctccCgctcatcctcctcaaaaggt	7	15	2	1	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	FAM135B-31	NM_015912	exon13	c.G2279A	p.R760Q	ACCTCCCGCTCAT	.	62	15	72	1	.	0	0	0	0	0	T	139164439	C	T	139164439	3	4	52	1	0	0	0	0	1	0	0	0	5465	652	23	1	1973	1	FAM135B	8	139164439	Missense_Mutation	SNP	C	TCGA-OR-A5LJ-01A-11D-A29I-10	5250673	139164439	7199583	297	10613										
TRAPPC9	83696	broad.mit.edu;bcgsc.ca	37	chr8	140898200	140898200	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	ccacactcgcctcgccactgCgcttcagggaggggtgagcc	13	16	1	1	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	TRAPPC9-228	NM_031466	exon21	c.G3272A	p.R1091H	CCACTGCGCTTCA	.	331	14	472	0	.	0	0	0	0	0	T	140898200	C	T	140898200	3	4	52	1	0	0	0	0	1	0	0	0	16503	768	27	1	480	1	TRAPPC9	8	140898200	Missense_Mutation	SNP	C	TCGA-OR-A5LJ-01A-11D-A29I-10	1733761	140898200	5465822	298	10614										
CYP11B1	1584	broad.mit.edu	37	chr8	143960582	143960582	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	ggcagcatcacacacaccatGcctgctcctcccaagtcgta	7	17	1	0	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	CYP11B1-94	NM_000497	exon2	c.C261G	p.G87G	CACCATGCCTGCT	.	115	4	197	0	.	4	4	0	0	0	C	143960582	G	C	143960582	2	2	52	1	0	0	0	0	0	0	0	1	4151	1306	46	3		3	CYP11B1	8	143960582	Silent	SNP	G	TCGA-OR-A5LJ-01A-11D-A29I-10	3062382	143960582	2403440	299	10615										
GRINA	2907	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr8	145066998	145066998	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	tcctcaccatcattggccgcGccaaggagtagccgagctcc	10	16	2	0	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	GRINA-90	NM_001009184	exon7	c.G1105A	p.A369T	GGCCGCGCCAAGG	.	115	89	144	1	.	407	3	403	1	0	A	145066998	G	A	145066998	3	1	52	1	0	0	0	0	1	0	0	0	6806	1087	38	1	1127	1	GRINA	8	145066998	Missense_Mutation	SNP	G	TCGA-OR-A5LJ-01A-11D-A29I-10	1106416	145066998	1297024	300	10616										
ZNF251	90987	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr8	145947714	145947714	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	gctgaacaagagtggaactcCgacgaaaggctttgccgcac	12	11	0	2	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	ZNF251-68	NM_138367	exon5	c.G1331A	p.R444Q	GAACTCCGACGAA	.	70	63	97	1	.	9	1	8	0	0	T	145947714	C	T	145947714	3	4	52	1	0	0	0	0	1	0	0	0	17833	652	23	1	688	1	ZNF251	8	145947714	Missense_Mutation	SNP	C	TCGA-OR-A5LJ-01A-11D-A29I-10	880716	145947714	416308	301	10617										
WASH1	100287171	bcgsc.ca	37	chr9	14909	14909	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	acaaaggctcctccgggcccCtcaccagccccaggtccttt	8	19	1	0	rs2974795	bycluster;by2hit2allele;byhapmap	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	.	NM_182905	exon11	c.G1296C	p.E432D	GGGCCCCTCACCA	.	457	40	611	1	.	230	230	0	0	0	G	14909	C	G	14909	3	3	52	1	0	0	0	0	1	0	0	0	17293	680	24	3	105	3	WASH1	9	14909	Missense_Mutation	SNP	C	TCGA-OR-A5LJ-01A-11D-A29I-10		14909	141198522	302	10618										
C9orf66	157983	hgsc.bcm.edu	37	chr9	214719	214719	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	cagtatcgggaggccagttcCgcgctgggcccacgccctcc	13	17	0	0	rs115610637	byfrequency	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	C9orf66-514	NM_152569	exon1	c.G678A	p.A226A	CAGTTCCGCGCTG	.	6	4	0	0	C|0.983;T|0.017	0	0	0	0	0	T	214719	C	T	214719	2	4	52	1	0	0	0	0	0	0	0	1	2496	639	23	1		1	C9orf66	9	214719	Silent	SNP	C	TCGA-OR-A5LJ-01A-11D-A29I-10	199810	214719	140998712	303	10619										
SMARCA2	6595	hgsc.bcm.edu	37	chr9	2039777	2039791	+	In_Frame_Del	DEL	CAGCAGCAGCAGCAG	CAGCAGCAGCAGCAG	-													0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	agcaacaacagcagcagcaaCagcagcagcagcagcagcag					rs113070757	byfrequency;alternate_allele	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	CAGCAGCAGCAGCAG	CAGCAGCAGCAGCAG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	SMARCA2-653	NM_139045	exon4	c.667_681del	p.223_227del	CAGCAACAGCAGC	.	141	48	89	0	-|0.500;CAG|0.500	0	0	0	0	0	-	2039791	CAGCAGCAGCAGCAG	-	2039777	7	5	52	1	0	1	0	1	0	0	0	0	14804	479	17	0	677	0	SMARCA2	9	2039777	In_Frame_Del	DEL	CAGCAGCAGCAGCAG	TCGA-OR-A5LJ-01A-11D-A29I-10	1825058	2039777	139173654	304	10620										
RFX3	5991	broad.mit.edu;bcgsc.ca	37	chr9	3263055	3263055	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	agcgacgtgtatcttcgcagAgtctgggcaaaggcacttac	12	10	2	1	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	RFX3-93	NM_134428	exon14	c.T1485G	p.T495T	TCGCAGAGTCTGG	.	225	9	206	0	.	1	1	0	0	0	C	3263055	A	C	3263055	2	2	52	1	0	0	0	0	0	0	0	1	13299	291	11	5		5	RFX3	9	3263055	Silent	SNP	A	TCGA-OR-A5LJ-01A-11D-A29I-10	1223278	3263055	137950376	305	10621										
MPDZ	8777	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	13119542	13119542	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	ttcttgggtggcattacgaaCgtcttccccattcaccatta	7	12	3	0	rs202112833		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	MPDZ-231	NM_003829	exon39	c.G5338A	p.V1780I	TACGAACGTCTTC	.	132	61	117	1	.	10	5	5	0	0	T	13119542	C	T	13119542	3	4	52	1	0	0	0	0	1	0	0	0	9750	536	19	1	819	1	MPDZ	9	13119542	Missense_Mutation	SNP	C	TCGA-OR-A5LJ-01A-11D-A29I-10	9856487	13119542	128093889	306	10622										
MTAP	4507	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	21854738	21854738	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	gggcagaaagcttcatgttcCgcacctggggggcggatgtt	16	9	1	1	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	MTAP-651	NM_002451	exon6	c.C559T	p.R187C	ATGTTCCGCACCT	.	217	42	142	3	.	17	14	3	0	0	T	21854738	C	T	21854738	3	4	52	1	0	0	0	0	1	0	0	0	9939	652	23	1	581	1	MTAP	9	21854738	Missense_Mutation	SNP	C	TCGA-OR-A5LJ-01A-11D-A29I-10	8735196	21854738	119358693	307	10623										
SMU1	55234	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr9	33056173	33056173	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	atcttgtgtaaatgttgcttCgttaacaaaggaggaatggc	11	5	1	0	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	SMU1-91	NM_018225	exon9	c.G1060A	p.E354K	TTGCTTCGTTAAC	.	85	41	71	0	.	68	39	29	0	0	T	33056173	C	T	33056173	3	4	52	1	0	0	0	0	1	0	0	0	14852	893	31	1	497	1	SMU1	9	33056173	Missense_Mutation	SNP	C	TCGA-OR-A5LJ-01A-11D-A29I-10	11201435	33056173	108157258	308	10624										
KIF24	347240	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr9	34306345	34306345	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	aataatattaatttctccacGacgtacctccctcatgccca	3	14	2	0	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	KIF24-22	NM_194313	exon3	c.C718T	p.R240C	CTCCACGACGTAC	.	123	8	86	0	.	0	0	0	0	0	A	34306345	G	A	34306345	3	1	52	1	0	0	0	0	1	0	0	0	8313	1058	37	1	3432	1	KIF24	9	34306345	Missense_Mutation	SNP	G	TCGA-OR-A5LJ-01A-11D-A29I-10	1250172	34306345	106907086	309	10625										
UNC13B	10497	broad.mit.edu	37	chr9	35399222	35399222	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	gtgtactgaaggagctctggCgcgtggtgatgaacacaatg	15	7	1	3	rs140628524		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	UNC13B-157	NM_006377	exon33	c.C3892T	p.R1298C	CTCTGGCGCGTGG	.	473	8	393	1	C|1.000;T|0.000	31	27	3	0	1	T	35399222	C	T	35399222	3	4	52	1	0	0	0	0	1	0	0	0	17023	768	27	1	4022	1	UNC13B	9	35399222	Missense_Mutation	SNP	C	TCGA-OR-A5LJ-01A-11D-A29I-10	1092877	35399222	105814209	310	10626										
RUSC2	9853	hgsc.bcm.edu;bcgsc.ca	37	chr9	35560687	35560688	+	Frame_Shift_Del	DEL	CT	CT	-													0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	tggatggggagcccccctgaCtctgtgctggccgagctgag					novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	CT	CT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	RUSC2-91	NM_014806	exon10	c.4050_4051del	p.1350_1351del	CCCTGACTCTGTG	.	69	31	53	1	.	0	0	0	0	0	-	35560688	CT	-	35560687	7	5	52	1	0	1	0	1	0	0	0	0	13786	564	20	0	4084	0	RUSC2	9	35560687	Frame_Shift_Del	DEL	CT	TCGA-OR-A5LJ-01A-11D-A29I-10	161465	35560687	105652744	311	10627										
CEP78	84131	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr9	80854984	80854984	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	aagtcgtgttcctgcgataaGatacaaagatgtgaccttcc	9	9	0	3	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	CEP78-69	NM_001098802	exon2	c.G299A	p.R100K	CGATAAGATACAA	.	105	9	91	0	.	3	3	0	0	0	A	80854984	G	A	80854984	3	1	52	1	0	0	0	0	1	0	0	0	3268	942	33	3	305	3	CEP78	9	80854984	Missense_Mutation	SNP	G	TCGA-OR-A5LJ-01A-11D-A29I-10	45294297	80854984	60358447	312	10628										
DAPK1	1612	broad.mit.edu;bcgsc.ca	37	chr9	90321154	90321154	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	tccgtggagaccccacgggcGctgcaccactaccggggccg	14	17	0	1	rs193150601	by1000genomes	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	DAPK1-359	NM_004938	exon26	c.G3168A	p.A1056A	ACGGGCGCTGCAC	.	327	15	160	0	G|0.999;A|0.000	2	2	0	0	0	A	90321154	G	A	90321154	2	1	52	1	0	0	0	0	0	0	0	1	4241	1074	38	1		1	DAPK1	9	90321154	Silent	SNP	G	TCGA-OR-A5LJ-01A-11D-A29I-10	9466170	90321154	50892277	313	10629										
SPTLC1	10558	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	94794822	94794822	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	tcttcctctgtttgttccacCgtgaccacaacccgaatgct	6	15	2	1	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	SPTLC1-154	NM_006415	exon15	c.G1347A	p.T449T	TTCCACCGTGACC	.	193	81	193	1	.	106	49	57	0	0	T	94794822	C	T	94794822	2	4	52	1	0	0	0	0	0	0	0	1	15160	639	23	1		1	SPTLC1	9	94794822	Silent	SNP	C	TCGA-OR-A5LJ-01A-11D-A29I-10	4473668	94794822	46418609	314	10630										
PTCH1	5727	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr9	98231105	98231105	+	Frame_Shift_Del	DEL	G	G	-													0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	gagagtgtccacttcgtacaGgggggctcgaggcagtggag					novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	PTCH1-3532	NM_000264	exon14	c.2178delC	p.P726fs	CGTACAGGGGGGC	.	184	76	176	0	.	0	0	0	0	0	-	98231105	G	-	98231105	7	5	52	1	0	1	0	1	0	0	0	0	12762	987	35	0	2205	0	PTCH1	9	98231105	Frame_Shift_Del	DEL	G	TCGA-OR-A5LJ-01A-11D-A29I-10	3436283	98231105	42982326	315	10631										
MUSK	4593	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	113562990	113562990	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	cagagtccattttttataacCgctacactacagagtctgat	6	10	1	3	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	MUSK-1379	NM_005592	exon14	c.C2332T	p.R778C	TATAACCGCTACA	.	209	90	169	1	.	0	0	0	0	0	T	113562990	C	T	113562990	3	4	52	1	0	0	0	0	1	0	0	0	10017	652	23	1	2422	1	MUSK	9	113562990	Missense_Mutation	SNP	C	TCGA-OR-A5LJ-01A-11D-A29I-10	15331885	113562990	27650441	316	10632										
ASTN2	23245	broad.mit.edu	37	chr9	119625887	119625887	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	atcccgaggaatccacctgcCggtcagacacacacttgaag	9	14	1	2	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	ASTN2-161	NM_014010	exon10	c.G1862A	p.R621Q	ACCTGCCGGTCAG	.	154	5	138	0	.	0	0	0	0	0	T	119625887	C	T	119625887	3	4	52	1	0	0	0	0	1	0	0	0	1066	652	23	1	2288	1	ASTN2	9	119625887	Missense_Mutation	SNP	C	TCGA-OR-A5LJ-01A-11D-A29I-10	6062897	119625887	21587544	317	10633										
DBC1	1620	ucsc.edu;bcgsc.ca	37	chr9	121929614	121929614	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	tggccgccctgtgtgtaggaCtggttgacctgctgcactgc	14	12	0	1	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	DBC1-582	NM_014618	exon8	c.G2034A	p.Q678Q	GTAGGACTGGTTG	.	269	97	228	3	.	1	1	0	0	0	T	121929614	C	T	121929614	2	4	52	1	0	0	0	0	0	0	0	1	4253	564	20	3		3	DBC1	9	121929614	Silent	SNP	C	TCGA-OR-A5LJ-01A-11D-A29I-10	2303727	121929614	19283817	318	10634										
PSMD5	5711	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr9	123586958	123586958	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	caggtttccaaaaaacttcaCgaatcctaaagagatttaca	5	9	1	1	rs149552567		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	PSMD5-90	NM_005047	exon7	c.G820A	p.V274M	ACTTCACGAATCC	.	64	33	63	0	C|1.000;T|0.000	0	0	0	0	0	T	123586958	C	T	123586958	3	4	52	1	0	0	0	0	1	0	0	0	12733	536	19	1	710	1	PSMD5	9	123586958	Missense_Mutation	SNP	C	TCGA-OR-A5LJ-01A-11D-A29I-10	1657344	123586958	17626473	319	10635										
DAB2IP	153090	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	124519406	124519406	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	gaagaggtggtcatcaagccCgtgcacagcagcatccttgg	13	11	2	1	rs35510547	byfrequency;alternate_allele	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	DAB2IP-91	NM_032552	exon4	c.C393T	p.P131P	CAAGCCCGTGCAC	.	376	165	330	1	C|0.994;G|0.006	0	0	0	0	0	T	124519406	C	T	124519406	2	4	52	1	0	0	0	0	0	0	0	1	4225	639	23	1		1	DAB2IP	9	124519406	Silent	SNP	C	TCGA-OR-A5LJ-01A-11D-A29I-10	932448	124519406	16694025	320	10636										
HSPA5	3309	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr9	127998973	127998973	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	tgaacaatttcttccagttcCttcttcttagctttgaagtc	5	10	3	2	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	HSPA5-230	NM_005347	exon8	c.G1863T	p.K621N	CAGTTCCTTCTTC	.	140	8	122	0	.	593	570	22	0	1	A	127998973	C	A	127998973	3	1	52	1	0	0	0	0	1	0	0	0	7435	680	24	3	105	3	HSPA5	9	127998973	Missense_Mutation	SNP	C	TCGA-OR-A5LJ-01A-11D-A29I-10	3479567	127998973	13214458	321	10637										
TTC16	158248	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	130479967	130479967	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	ctctgtgacttctcctcggcCgcccagaacctgcgaagggc	11	16	2	2	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	TTC16-90	NM_144965	exon4	c.C342T	p.A114A	CTCGGCCGCCCAG	.	197	90	190	1	.	0	0	0	0	0	T	130479967	C	T	130479967	2	4	52	1	0	0	0	0	0	0	0	1	16721	639	23	1		1	TTC16	9	130479967	Silent	SNP	C	TCGA-OR-A5LJ-01A-11D-A29I-10	2480994	130479967	10733464	322	10638										
FPGS	2356	hgsc.bcm.edu	37	chr9	130565267	130565267	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	cagcggcgtctgcgcgcggcAtaacgacccaggtcgcggcg	16	15	1	0	rs10760502	byfrequency	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	FPGS-90	NM_004957	exon1	c.A64G	p.I22V	CGCGGCATAACGA	.	6	6	0	0	A|0.235;G|0.765	2	0	2	0	0	G	130565267	A	G	130565267	3	3	52	1	0	0	0	0	1	0	0	0	6055	217	8	4	66	4	FPGS	9	130565267	Missense_Mutation	SNP	A	TCGA-OR-A5LJ-01A-11D-A29I-10	85300	130565267	10648164	323	10639										
COL5A1	1289	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr9	137623934	137623934	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	cagattggaggacctcggggCgagaaaggccaaaagggaga	17	7	0	3	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	COL5A1-524	NM_000093	exon9	c.C1350T	p.G450G	TCGGGGCGAGAAA	.	177	68	160	1	.	5	3	2	0	0	T	137623934	C	T	137623934	2	4	52	1	0	0	0	0	0	0	0	1	3702	755	27	1		1	COL5A1	9	137623934	Silent	SNP	C	TCGA-OR-A5LJ-01A-11D-A29I-10	7058667	137623934	3589497	324	10640										
COL5A1	1289	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	137716657	137716657	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	cacgcagcagaaccccgcccGcacctgcaaggacctgcagc	10	19	0	1	rs199998065		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	COL5A1-524	NM_000093	exon62	c.G4910A	p.R1637H	CCGCCCGCACCTG	.	173	85	114	1	G|0.999;A|0.001	12	7	5	0	0	A	137716657	G	A	137716657	3	1	52	1	0	0	0	0	1	0	0	0	3702	1087	38	1	5156	1	COL5A1	9	137716657	Missense_Mutation	SNP	G	TCGA-OR-A5LJ-01A-11D-A29I-10	92723	137716657	3496774	325	10641										
RNF208	727800	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr9	140115250	140115250	+	Missense_Mutation	SNP	C	C	T													0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	ggtggggcactccaggggctCgcctgccgccgccgaagaag					novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	.	NM_031297	exon1	c.G415A	p.E139K	GGGGCTCGCCTGC	.	104	18	21	0	.	15	12	3	0	0	T	140115250	C	T	140115250	3	4	52	1	0	0	0	0	1	0	0	0	13510	893	31	1	374	1	RNF208	9	140115250	Missense_Mutation	SNP	C	TCGA-OR-A5LJ-01A-11D-A29I-10	2398593	140115250	1098181	326	10642	123	2								
RNF208	727800	hgsc.bcm.edu;broad.mit.edu	37	chr9	140115251	140115251	+	Silent	SNP	G	G	A													0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	gtggggcactccaggggctcGcctgccgccgccgaagaagc					novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	.	NM_031297	exon1	c.C414T	p.G138G	GGGCTCGCCTGCC	.	100	10	18	0	.	22	13	7	2	0	A	140115251	G	A	140115251	2	1	52	1	0	0	0	0	0	0	0	1	13510	1074	38	1		1	RNF208	9	140115251	Silent	SNP	G	TCGA-OR-A5LJ-01A-11D-A29I-10	1	140115251	1098180	327	10643	123	2								
EXD3	54932	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	140243597	140243597	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	cggtgctgacgctttctgcaGgccgggtggcttccgtgccc	15	14	1	1	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	EXD3-90	NM_017820	exon16	c.C1795A	p.L599M	TCTGCAGGCCGGG	.	91	44	56	1	.	0	0	0	0	0	T	140243597	G	T	140243597	3	4	52	1	0	0	0	0	1	0	0	0	5312	991	35	3	863	3	EXD3	9	140243597	Missense_Mutation	SNP	G	TCGA-OR-A5LJ-01A-11D-A29I-10	128346	140243597	969834	328	10644										
EXD3	54932	broad.mit.edu	37	chr9	140262422	140262422	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	gctccgactgcagcttcaacGtcgcgcccagcgtggctgcc	12	17	1	0	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	EXD3-90	NM_017820	exon6	c.C482T	p.T161M	TTCAACGTCGCGC	.	113	5	119	0	.	1	1	0	0	0	A	140262422	G	A	140262422	3	1	52	1	0	0	0	0	1	0	0	0	5312	1145	40	1	2216	1	EXD3	9	140262422	Missense_Mutation	SNP	G	TCGA-OR-A5LJ-01A-11D-A29I-10	18825	140262422	951009	329	10645										
ARRDC1	92714	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr9	140508572	140508572	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	cacagccagcactgatctccGcggctatgtggtggggcagg	15	12	1	1	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	ARRDC1-90	NM_152285	exon5	c.G524A	p.R175H	ATCTCCGCGGCTA	.	192	15	156	0	.	99	92	7	0	0	A	140508572	G	A	140508572	3	1	52	1	0	0	0	0	1	0	0	0	983	1087	38	1	542	1	ARRDC1	9	140508572	Missense_Mutation	SNP	G	TCGA-OR-A5LJ-01A-11D-A29I-10	246150	140508572	704859	330	10646										
EHMT1	79813	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr9	140676778	140676778	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	ccaacttcaaaatggagcacCagaataagcgctctccactg	7	13	2	1	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	EHMT1-154	NM_001145527	exon15	c.C2311T	p.Q771X	GAGCACCAGAATA	.	95	43	87	0	.	24	18	6	0	0	T	140676778	C	T	140676778	4	4	52	1	0	0	0	0	0	1	0	0	4994	595	21	3	2369	3	EHMT1	9	140676778	Nonsense_Mutation	SNP	C	TCGA-OR-A5LJ-01A-11D-A29I-10	168206	140676778	536653	331	10647										
NET1	10276	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr10	5498113	5498113	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	ggcccgtcacacggaacgaaCggcactcttaccaggtttac	10	14	2	0	rs139037982		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	NET1-290	NM_001047160	exon11	c.C1261T	p.R421W	AACGAACGGCACT	.	103	46	69	0	C|1.000;T|0.000	11	5	6	0	0	T	5498113	C	T	5498113	3	4	52	1	0	0	0	0	1	0	0	0	10367	527	19	1	1400	1	NET1	10	5498113	Missense_Mutation	SNP	C	TCGA-OR-A5LJ-01A-11D-A29I-10		5498113	130036634	332	10648										
TAF3	83860	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr10	8007680	8007682	+	In_Frame_Del	DEL	AGA	AGA	-													0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	gcgagagaagagagaaaaagAgaaggagaaacacaagcatg					novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	AGA	AGA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	TAF3-69	NM_031923	exon3	c.2207_2209del	p.736_737del	AAAAAGAGAAGGA	.	160	65	121	0	.	0	0	0	0	0	-	8007682	AGA	-	8007680	7	5	52	1	0	1	0	1	0	0	0	0	15562	304	11	0	2217	0	TAF3	10	8007680	In_Frame_Del	DEL	AGA	TCGA-OR-A5LJ-01A-11D-A29I-10	2509567	8007680	127527067	333	10649										
ARHGAP21	57584	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr10	24873649	24873649	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	agaggtactggtgcgtaggcGttccctggccagccagtctg	15	11	1	1	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	ARHGAP21-235	NM_020824	exon26	c.C5569T	p.R1857C	GTAGGCGTTCCCT	.	244	102	196	0	.	45	20	25	0	0	A	24873649	G	A	24873649	3	1	52	1	0	0	0	0	1	0	0	0	871	1145	40	1	311	1	ARHGAP21	10	24873649	Missense_Mutation	SNP	G	TCGA-OR-A5LJ-01A-11D-A29I-10	16865969	24873649	110661098	334	10650										
KIAA1462	57608	hgsc.bcm.edu;bcgsc.ca	37	chr10	30316849	30316852	+	Frame_Shift_Del	DEL	TGTT	TGTT	-													0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	ggttacgggcacttggcctcTgtttgtgatcaccggtaggg					novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	TGTT	TGTT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	KIAA1462-72	NM_020848	exon3	c.2225_2228del	p.742_743del	GGCCTCTGTTTGT	.	232	92	190	1	.	0	0	0	0	0	-	30316852	TGTT	-	30316849	7	5	52	1	0	1	0	1	0	0	0	0	8255	1580	55	0	1859	0	KIAA1462	10	30316849	Frame_Shift_Del	DEL	TGTT	TCGA-OR-A5LJ-01A-11D-A29I-10	5443200	30316849	105217898	335	10651										
ERCC6	2074	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	50691492	50691492	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	acctgctaatgtcatcctgcAtcaatcgaatgtaggagtaa	8	9	2	0	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	ERCC6-1153	NM_000124	exon9	c.T1892G	p.M631R	TCCTGCATCAATC	.	230	108	149	1	.	0	0	0	0	0	C	50691492	A	C	50691492	3	2	52	1	0	0	0	0	1	0	0	0	5230	217	8	5	2641	5	ERCC6	10	50691492	Missense_Mutation	SNP	A	TCGA-OR-A5LJ-01A-11D-A29I-10	20374643	50691492	84843255	336	10652										
SGMS1	259230	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	52103641	52103641	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	aggtgcccattggcatggccGttcttgtgtgcttccaaatg	12	10	1	0	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	SGMS1-227	NM_147156	exon7	c.C234T	p.N78N	ATGGCCGTTCTTG	.	138	29	80	1	.	6	2	4	0	0	A	52103641	G	A	52103641	2	1	52	1	0	0	0	0	0	0	0	1	14249	1136	40	1		1	SGMS1	10	52103641	Silent	SNP	G	TCGA-OR-A5LJ-01A-11D-A29I-10	1412149	52103641	83431106	337	10653										
PCDH15	65217	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	55581863	55581863	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	gccttttggttctctctgagGgtctgttttacacactgtcg	10	10	3	1	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	PCDH15-193	NM_001142763	exon35	c.C5644A	p.P1882T	TCTGAGGGTCTGT	.	114	62	76	2	.	0	0	0	0	0	T	55581863	G	T	55581863	3	4	52	1	0	0	0	0	1	0	0	0	11540	1232	43	3	1854	3	PCDH15	10	55581863	Missense_Mutation	SNP	G	TCGA-OR-A5LJ-01A-11D-A29I-10	3478222	55581863	79952884	338	10654										
IPMK	253430	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr10	59956132	59956132	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	tatatattttcctgtgacgcGcatacatcttggacaagctt	7	9	1	1	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	IPMK-228	NM_152230	exon6	c.C956T	p.A319V	TGACGCGCATACA	.	83	34	56	0	.	2	1	1	0	0	A	59956132	G	A	59956132	3	1	52	1	0	0	0	0	1	0	0	0	7813	1087	38	1	298	1	IPMK	10	59956132	Missense_Mutation	SNP	G	TCGA-OR-A5LJ-01A-11D-A29I-10	4374269	59956132	75578615	339	10655										
ANK3	288	broad.mit.edu	37	chr10	61828580	61828580	+	Frame_Shift_Del	DEL	T	T	-													0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	cggacaactcggactgcatcTttttttcttcttcagagagg					novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	ANK3-107	NM_020987	exon37	c.12059delA	p.K4020fs	TGCATCTTTTTTT	.	162	7	122	0	.	0	0	0	0	0	-	61828580	T	-	61828580	7	5	52	1	0	1	0	1	0	0	0	0	622	1609	56	0	1415	0	ANK3	10	61828580	Frame_Shift_Del	DEL	T	TCGA-OR-A5LJ-01A-11D-A29I-10	1872448	61828580	73706167	340	10656										
RUFY2	55680	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr10	70105818	70105820	+	In_Frame_Del	DEL	TTT	TTT	-													0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	agtttacaatgtgttgcttcTttgtctttcagccaaaccag					novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	TTT	TTT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	RUFY2-91	NM_017987	exon17	c.1726_1728del	p.576_576del	TGCTTCTTTGTCT	.	65	27	56	0	.	0	0	0	0	0	-	70105820	TTT	-	70105818	7	5	52	1	0	1	0	1	0	0	0	0	13774	1606	56	0	205	0	RUFY2	10	70105818	In_Frame_Del	DEL	TTT	TCGA-OR-A5LJ-01A-11D-A29I-10	8277238	70105818	65428929	341	10657										
TET1	80312	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr10	70426853	70426853	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	ttctttgtttggtccggcagCgtacaggccaccactgtcca	10	13	1	0	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	TET1-663	NM_030625	exon7	c.C4513T	p.R1505C	CGGCAGCGTACAG	.	138	59	109	0	.	0	0	0	0	0	T	70426853	C	T	70426853	3	4	52	1	0	0	0	0	1	0	0	0	15806	768	27	1	4535	1	TET1	10	70426853	Missense_Mutation	SNP	C	TCGA-OR-A5LJ-01A-11D-A29I-10	321035	70426853	65107894	342	10658										
NPFFR1	64106	hgsc.bcm.edu	37	chr10	72014863	72014863	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	cccgactcagagggcagcccGgagtcgctgggccgcaccac	14	17	1	1	rs60225321	byfrequency	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	NPFFR1-22	NM_022146	exon4	c.C1143T	p.S381S	CAGCCCGGAGTCG	.	18	9	0	0	G|0.929;A|0.071	0	0	0	0	0	A	72014863	G	A	72014863	2	1	52	1	0	0	0	0	0	0	0	1	10606	1103	39	1		1	NPFFR1	10	72014863	Silent	SNP	G	TCGA-OR-A5LJ-01A-11D-A29I-10	1588010	72014863	63519884	343	10659										
CDH23	64072	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	73551036	73551036	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	cctggatgacaatgacaaccGgcccacctttagccctgcca	8	16	0	2	rs201887949		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	CDH23-563	NM_022124	exon45	c.G6197A	p.R2066Q	ACAACCGGCCCAC	.	207	35	169	0	G|0.998;A|0.002	0	0	0	0	0	A	73551036	G	A	73551036	3	1	52	1	0	0	0	0	1	0	0	0	3114	1116	39	1	6724	1	CDH23	10	73551036	Missense_Mutation	SNP	G	TCGA-OR-A5LJ-01A-11D-A29I-10	1536173	73551036	61983711	344	10660										
CDH23	64072	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr10	73560424	73560424	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	tgtgctgtcttctctggaccGggagaagaaggaccactata	12	9	2	2	rs199903227		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	CDH23-563	NM_022124	exon51	c.G7394A	p.R2465Q	TGGACCGGGAGAA	.	155	61	172	0	.	0	0	0	0	0	A	73560424	G	A	73560424	3	1	52	1	0	0	0	0	1	0	0	0	3114	1116	39	1	7945	1	CDH23	10	73560424	Missense_Mutation	SNP	G	TCGA-OR-A5LJ-01A-11D-A29I-10	9388	73560424	61974323	345	10661										
SYNPO2L	79933	broad.mit.edu;bcgsc.ca	37	chr10	75414029	75414029	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	tgctctgccagcctggctccGtcttcgaatctgagatgttg	11	12	3	1	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	SYNPO2L-91	NM_001114133	exon2	c.C115T	p.R39W	GGCTCCGTCTTCG	.	162	59	136	3	.	0	0	0	0	0	A	75414029	G	A	75414029	3	1	52	1	0	0	0	0	1	0	0	0	15495	1144	40	1	2934	1	SYNPO2L	10	75414029	Missense_Mutation	SNP	G	TCGA-OR-A5LJ-01A-11D-A29I-10	1853605	75414029	60120718	346	10662										
DLG5	9231	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr10	79603319	79603319	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	cctcccccagctgctccaggCggctcaggtctgcattgtgg	12	16	2	0	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	DLG5-98	NM_004747	exon6	c.G1010A	p.R337H	TCCAGGCGGCTCA	.	311	155	277	1	.	22	14	8	0	0	T	79603319	C	T	79603319	3	4	52	1	0	0	0	0	1	0	0	0	4569	768	27	1	4857	1	DLG5	10	79603319	Missense_Mutation	SNP	C	TCGA-OR-A5LJ-01A-11D-A29I-10	4189290	79603319	55931428	347	10663										
GRID1	2894	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	87675969	87675969	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	cacaaagacccagtggctgtCcttggaagccaggttggtct	12	11	1	1	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	GRID1-142	NM_017551	exon5	c.G754A	p.D252N	GGCTGTCCTTGGA	.	65	31	55	1	.	2	1	1	0	0	T	87675969	C	T	87675969	3	4	52	1	0	0	0	0	1	0	0	0	6792	855	30	3	2323	3	GRID1	10	87675969	Missense_Mutation	SNP	C	TCGA-OR-A5LJ-01A-11D-A29I-10	8072650	87675969	47858778	348	10664										
GRID1	2894	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr10	87898579	87898579	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	aggcccccatgacctacctcGttgatgaaggagtgggctcc	12	13	0	3	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	GRID1-142	NM_017551	exon4	c.C723T	p.N241N	TACCTCGTTGATG	.	170	81	130	0	.	0	0	0	0	0	A	87898579	G	A	87898579	2	1	52	1	0	0	0	0	0	0	0	1	6792	1136	40	1		1	GRID1	10	87898579	Silent	SNP	G	TCGA-OR-A5LJ-01A-11D-A29I-10	222610	87898579	47636168	349	10665										
HELLS	3070	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	96353307	96353307	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	ttatcttcttagtgagtacaCgagctggtggcctgggcatt	12	8	2	1	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	HELLS-92	NM_018063	exon18	c.C2023T	p.R675X	AGTACACGAGCTG	.	200	99	134	1	.	0	0	0	0	0	T	96353307	C	T	96353307	4	4	52	1	0	0	0	0	0	1	0	0	7067	528	19	1	2093	1	HELLS	10	96353307	Nonsense_Mutation	SNP	C	TCGA-OR-A5LJ-01A-11D-A29I-10	8454728	96353307	39181440	350	10666										
MORN4	118812	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr10	99376052	99376052	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	atttctggctgacttggaggCgctctgggcccgctgaacaa	13	11	2	2	rs150577682		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	MORN4-90	NM_001098831	exon5	c.G409A	p.A137T	TGGAGGCGCTCTG	.	114	55	91	1	C|0.999;T|0.000	4	3	1	0	0	T	99376052	C	T	99376052	3	4	52	1	0	0	0	0	1	0	0	0	9738	768	27	1	35	1	MORN4	10	99376052	Missense_Mutation	SNP	C	TCGA-OR-A5LJ-01A-11D-A29I-10	3022745	99376052	36158695	351	10667										
PI4K2A	55361	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr10	99426276	99426276	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	tctgatccttccaaagatatCggaccctaacttcgtcaagg	7	12	2	2	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	PI4K2A-226	NM_018425	exon7	c.C1166G	p.S389W	AGATATCGGACCC	.	56	15	56	0	.	14	0	14	0	0	G	99426276	C	G	99426276	3	3	52	1	0	0	0	0	1	0	0	0	11900	893	31	2	1192	2	PI4K2A	10	99426276	Missense_Mutation	SNP	C	TCGA-OR-A5LJ-01A-11D-A29I-10	50224	99426276	36108471	352	10668										
CNNM1	26507	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr10	101124242	101124242	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	ggagcctttacttactatggCgtcccagccatcatgaccac	8	14	1	1	rs142898303		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	CNNM1-68	NM_020348	exon5	c.C2097T	p.G699G	CTATGGCGTCCCA	.	83	38	61	0	C|1.000;T|0.000	0	0	0	0	0	T	101124242	C	T	101124242	2	4	52	1	0	0	0	0	0	0	0	1	3618	755	27	1		1	CNNM1	10	101124242	Silent	SNP	C	TCGA-OR-A5LJ-01A-11D-A29I-10	1697966	101124242	34410505	353	10669										
FBXW4	6468	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr10	103371420	103371420	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	ttgacgccggtcccacagccGtacaacaccgtagtaggagg	12	13	0	1	rs140286143		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	FBXW4-226	NM_022039	exon8	c.C1084T	p.R362W	ACAGCCGTACAAC	.	206	82	204	0	G|1.000;A|0.000	122	56	66	0	0	A	103371420	G	A	103371420	3	1	52	1	0	0	0	0	1	0	0	0	5786	1144	40	1	162	1	FBXW4	10	103371420	Missense_Mutation	SNP	G	TCGA-OR-A5LJ-01A-11D-A29I-10	2247178	103371420	32163327	354	10670										
C10orf76	79591	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr10	103716388	103716388	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	ttgtcaaagctctggtgcatGcggataatctcatagtaaag	10	7	3	0	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	C10orf76-90	NM_024541	exon22	c.C1671T	p.R557R	GTGCATGCGGATA	.	203	35	150	0	.	15	14	1	0	0	A	103716388	G	A	103716388	2	1	52	1	0	0	0	0	0	0	0	1	1620	1306	46	3		3	C10orf76	10	103716388	Silent	SNP	G	TCGA-OR-A5LJ-01A-11D-A29I-10	344968	103716388	31818359	355	10671										
NFKB2	4791	hgsc.bcm.edu	37	chr10	104159196	104159196	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	ggggaggaagccgcggagccAagcgccccctccaggacccc	15	17	0	0	rs4919633	byfrequency	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	NFKB2-522	NM_001077494	exon13	c.A1269G	p.P423P	GGAGCCAAGCGCC	.	9	9	0	0	A|0.009;G|0.991	7	0	7	0	0	G	104159196	A	G	104159196	2	3	52	1	0	0	0	0	0	0	0	1	10405	117	5	4		4	NFKB2	10	104159196	Silent	SNP	A	TCGA-OR-A5LJ-01A-11D-A29I-10	442808	104159196	31375551	356	10672										
PDCD11	22984	ucsc.edu;bcgsc.ca;mdanderson.org	37	chr10	105177645	105177645	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	cagagccaaagaaagagcctGcaggacacagtcagaagaaa	11	9	1	5	rs11598673	byfrequency;alternate_allele	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	PDCD11-275	NM_014976	exon14	c.G1867A	p.A623T	GAGCCTGCAGGAC	.	279	134	223	2	G|0.954;T|0.046	3	2	1	0	0	A	105177645	G	A	105177645	3	1	52	1	0	0	0	0	1	0	0	0	11646	1319	46	3	1917	3	PDCD11	10	105177645	Missense_Mutation	SNP	G	TCGA-OR-A5LJ-01A-11D-A29I-10	1018449	105177645	30357102	357	10673										
COL17A1	1308	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr10	105803593	105803593	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	acctgcctacccgaagtcacGatcttgcctggagctcctgg	10	15	2	0	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	COL17A1-95	NM_000494	exon34	c.C2424T	p.I808I	AGTCACGATCTTG	.	209	93	189	0	.	0	0	0	0	0	A	105803593	G	A	105803593	2	1	52	1	0	0	0	0	0	0	0	1	3680	1048	37	1		1	COL17A1	10	105803593	Silent	SNP	G	TCGA-OR-A5LJ-01A-11D-A29I-10	625948	105803593	29731154	358	10674										
ADRA2A	150	hgsc.bcm.edu;broad.mit.edu	37	chr10	112838325	112838327	+	In_Frame_Del	DEL	GGC	GGC	-													0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	tcatctccatcgagaagaagGgcggcggcggcggcccgcag					novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	GGC	GGC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	ADRA2A-90	NM_000681	exon1	c.571_573del	p.191_191del	AAGAAGGGCGGCG	.	77	15	19	0	.	0	0	0	0	0	-	112838327	GGC	-	112838325	7	5	52	1	0	1	0	1	0	0	0	0	337	1232	43	0	573	0	ADRA2A	10	112838325	In_Frame_Del	DEL	GGC	TCGA-OR-A5LJ-01A-11D-A29I-10	7034732	112838325	22696422	359	10675										
VWA2	340706	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr10	116049187	116049187	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	ccccgggattccctgatccaCgtggcagcttacgccgacct	10	17	0	1	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	VWA2-156	NM_001272046	exon12	c.C2061T	p.H687H	GATCCACGTGGCA	.	265	38	240	0	.	0	0	0	0	0	T	116049187	C	T	116049187	2	4	52	1	0	0	0	0	0	0	0	1	17277	535	19	1		1	VWA2	10	116049187	Silent	SNP	C	TCGA-OR-A5LJ-01A-11D-A29I-10	3210862	116049187	19485560	360	10676										
SEC23IP	11196	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr10	121691801	121691803	+	In_Frame_Del	DEL	AAG	AAG	-													0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	gaaggtggccaatcagatcaAagaagaagaagaaaagcaag					novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	AAG	AAG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	SEC23IP-93	NM_007190	exon16	c.2729_2731del	p.910_911del	AGATCAAAGAAGA	.	109	32	83	0	.	0	0	0	0	0	-	121691803	AAG	-	121691801	7	5	52	1	0	1	0	1	0	0	0	0	14028	14	1	0	2791	0	SEC23IP	10	121691801	In_Frame_Del	DEL	AAG	TCGA-OR-A5LJ-01A-11D-A29I-10	5642614	121691801	13842946	361	10677										
FANK1	92565	hgsc.bcm.edu	37	chr10	127585221	127585221	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	agcagccgaccatggagcccCagagtaagggaggcccgggc	16	13	0	1	rs202109621		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	FANK1-91	NM_145235	exon1	c.C10T	p.Q4X	GAGCCCCAGAGTA	.	115	6	20	0	.	1	1	0	0	0	T	127585221	C	T	127585221	4	4	52	1	0	0	0	0	0	1	0	0	5691	595	21	3	12	3	FANK1	10	127585221	Nonsense_Mutation	SNP	C	TCGA-OR-A5LJ-01A-11D-A29I-10	5893420	127585221	7949526	362	10678										
KNDC1	85442	hgsc.bcm.edu	37	chr10	135000124	135000124	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	gaagcccagactcccagggaCgatgagagaattccagaagg	13	10	0	4	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	KNDC1-229	NM_152643	exon6	c.C1272T	p.D424D	CAGGGACGATGAG	.	19	12	1	0	.	18	9	9	0	0	T	135000124	C	T	135000124	2	4	52	1	0	0	0	0	0	0	0	1	8447	535	19	1		1	KNDC1	10	135000124	Silent	SNP	C	TCGA-OR-A5LJ-01A-11D-A29I-10	7414903	135000124	534623	363	10679			1	52		3	3	36	N	T_C_A	2.819145e-07
KNDC1	85442	hgsc.bcm.edu	37	chr10	135000148	135000148	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	gagagaattccagaaggagcTaggcagctggaaagtgcagc	15	7	0	2	rs3810965	byfrequency	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	KNDC1-229	NM_152643	exon6	c.T1296C	p.A432A	AGGAGCTAGGCAG	.	8	5	2	0	T|0.607;C|0.393	10	10	0	0	0	C	135000148	T	C	135000148	2	2	52	1	0	0	0	0	0	0	0	1	8447	1509	53	4		4	KNDC1	10	135000148	Silent	SNP	T	TCGA-OR-A5LJ-01A-11D-A29I-10	24	135000148	534599	364	10680			1	52		3	3	36	N	T_C_A	2.819145e-07
KNDC1	85442	hgsc.bcm.edu	37	chr10	135000159	135000159	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	agaaggagctaggcagctggAaagtgcagccgcggagcagg	18	8	0	1	rs3810964	byfrequency	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	KNDC1-229	NM_152643	exon6	c.A1307G	p.E436G	AGCTGGAAAGTGC	.	6	5	2	0	A|0.608;G|0.392	1	1	0	0	0	G	135000159	A	G	135000159	3	3	52	1	0	0	0	0	1	0	0	0	8447	246	9	4	1329	4	KNDC1	10	135000159	Missense_Mutation	SNP	A	TCGA-OR-A5LJ-01A-11D-A29I-10	11	135000159	534588	365	10681			1	52		3	3	36	N	T_C_A	2.819145e-07
KNDC1	85442	hgsc.bcm.edu	37	chr10	135012429	135012430	+	Missense_Mutation	DNP	TT	TT	AC													0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	tgagccgatcccacctggagTtgcttccgggggcctcaggc					novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	TT	TT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	KNDC1-229	NM_152643	exon14	c.T2418C	p.V806D	TGGAGTTGCTTCC	.	7	0	2	0	T|0.470;C|0.530	0	0	0	0	0	AC	135012430	TT	AC	135012429	3	1	52	1	0	0	0	0	1	0	0	0	8447	1725	60	5	2471	5	KNDC1	10	135012429	Missense_Mutation	DNP	TT	TCGA-OR-A5LJ-01A-11D-A29I-10	12270	135012429	522318	366	10682										
MUC5B	727897	bcgsc.ca	37	chr11	1271633	1271633	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	agggactgcaactgcccttcCagcactgagaagcacagcca	10	14	0	1	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	.	NM_002458	exon31	c.C13523A	p.P4508Q	CCCTTCCAGCACT	.	707	541	1117	7	.	0	0	0	0	0	A	1271633	C	A	1271633	3	1	52	1	0	0	0	0	1	0	0	0	10007	594	21	3	13654	3	MUC5B	11	1271633	Missense_Mutation	SNP	C	TCGA-OR-A5LJ-01A-11D-A29I-10		1271633	133734883	367	10683										
KRTAP5-5	439915	broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr11	1651190	1651190	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	ggctgtgggggctgtggctcCggctgtggaggctgtggggg	24	7	0	0	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	KRTAP5-5-23	NM_001001480	exon1	c.C120T	p.S40S	TGGCTCCGGCTGT	.	147	119	36	2	.	0	0	0	0	0	T	1651190	C	T	1651190	2	4	52	1	0	0	0	0	0	0	0	1	8586	639	23	1		1	KRTAP5-5	11	1651190	Silent	SNP	C	TCGA-OR-A5LJ-01A-11D-A29I-10	379557	1651190	133355326	368	10684										
TH	7054	ucsc.edu;bcgsc.ca	37	chr11	2190951	2190951	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	ggagaagagcaggtttagcaCggccttcccctccttctcct	10	14	1	2	rs6356	bycluster;byfrequency;by1000genomes	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	TH-90	NM_199292	exon3	c.G334A	p.V112M	TTAGCACGGCCTT	.	203	170	317	3	C|0.652;T|0.348	0	0	0	0	0	T	2190951	C	T	2190951	3	4	52	1	0	0	0	0	1	0	0	0	15875	536	19	1	1300	1	TH	11	2190951	Missense_Mutation	SNP	C	TCGA-OR-A5LJ-01A-11D-A29I-10	539761	2190951	132815565	369	10685										
OR56A3	390083	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	5969261	5969261	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	acaccttcattctgcgagctGtgctgagactcaaggcagag	11	11	3	2	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	OR56A3-68	NM_001003443	exon1	c.G685T	p.V229L	CGAGCTGTGCTGA	.	90	71	96	0	.	0	0	0	0	0	T	5969261	G	T	5969261	3	4	52	1	0	0	0	0	1	0	0	0	11163	1377	48	3	687	3	OR56A3	11	5969261	Missense_Mutation	SNP	G	TCGA-OR-A5LJ-01A-11D-A29I-10	3778310	5969261	129037255	370	10686										
FAM160A2	84067	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	6232915	6232915	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	tcgaagagcctcaccttggcGttcaggggccccgccccggg	14	16	2	1	rs201012137		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	FAM160A2-92	NM_032127	exon12	c.C2782T	p.R928C	CTTGGCGTTCAGG	.	54	9	78	0	G|1.000;A|0.000	11	8	3	0	0	A	6232915	G	A	6232915	3	1	52	1	0	0	0	0	1	0	0	0	5485	1145	40	1	182	1	FAM160A2	11	6232915	Missense_Mutation	SNP	G	TCGA-OR-A5LJ-01A-11D-A29I-10	263654	6232915	128773601	371	10687										
ST5	6764	broad.mit.edu	37	chr11	8724250	8724250	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	tccagccttgagtccatgggCcgccgcagctctaacacctg	10	16	1	1	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	ST5-227	NM_005418	exon17	c.G2589A	p.R863R	CATGGGCCGCCGC	.	88	4	137	0	.	9	8	1	0	0	T	8724250	C	T	8724250	2	4	52	1	0	0	0	0	0	0	0	1	15257	726	26	3		3	ST5	11	8724250	Silent	SNP	C	TCGA-OR-A5LJ-01A-11D-A29I-10	2491335	8724250	126282266	372	10688										
TEAD1	7003	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr11	12923632	12923632	+	Frame_Shift_Del	DEL	A	A	-													0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	actgtttggaaagggccctcAaaatgccttcttcctcgtaa					novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	TEAD1-90	NM_021961	exon10	c.845delA	p.Q282fs	GCCCTCAAAATGC	.	141	25	183	0	.	0	0	0	0	0	-	12923632	A	-	12923632	7	5	52	1	0	1	0	1	0	0	0	0	15775	130	5	0	875	0	TEAD1	11	12923632	Frame_Shift_Del	DEL	A	TCGA-OR-A5LJ-01A-11D-A29I-10	4199382	12923632	122082884	373	10689										
NAV2	89797	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	19955447	19955447	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	gggggaagctcaacagtgccAagaaggagcccatggcccct	14	12	1	1	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	NAV2-96	NM_001244963	exon8	c.A1726G	p.K576E	AGTGCCAAGAAGG	.	24	20	32	0	.	0	0	0	0	0	G	19955447	A	G	19955447	3	3	52	1	0	0	0	0	1	0	0	0	10212	131	5	4	1762	4	NAV2	11	19955447	Missense_Mutation	SNP	A	TCGA-OR-A5LJ-01A-11D-A29I-10	7031815	19955447	115051069	374	10690										
QSER1	79832	hgsc.bcm.edu;bcgsc.ca	37	chr11	32979554	32979554	+	Frame_Shift_Del	DEL	A	A	-													0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	agccaccaccaaagaaacggAaaaaatggaaagaagaattt					novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	QSER1-95	NM_001076786	exon8	c.4504delA	p.K1502fs	AAACGGAAAAAAT	.	102	79	102	1	.	0	0	0	0	0	-	32979554	A	-	32979554	7	5	52	1	0	1	0	1	0	0	0	0	12917	247	9	0	4526	0	QSER1	11	32979554	Frame_Shift_Del	DEL	A	TCGA-OR-A5LJ-01A-11D-A29I-10	13024107	32979554	102026962	375	10691										
TNKS1BP1	85456	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr11	57077118	57077119	+	Frame_Shift_Del	DEL	CT	CT	-													0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	actgaacaagcccccggatcCtctctctcctggccggccag					novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	CT	CT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	TNKS1BP1-91	NM_033396	exon6	c.3066_3067del	p.1022_1023del	CGGATCCTCTCTC	.	52	36	65	0	.	0	0	0	0	0	-	57077119	CT	-	57077118	7	5	52	1	0	1	0	1	0	0	0	0	16357	690	24	0	2146	0	TNKS1BP1	11	57077118	Frame_Shift_Del	DEL	CT	TCGA-OR-A5LJ-01A-11D-A29I-10	24097564	57077118	77929398	376	10692										
FADS2	9415	hgsc.bcm.edu	37	chr11	61607885	61607887	+	In_Frame_Del	DEL	TCC	TCC	-													0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	caagaccaaccacgtgttctTcctcctcctcctggcccaca					novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	TCC	TCC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	FADS2-92	NM_004265	exon3	c.398_400del	p.133_134del	TGTTCTTCCTCCT	.	193	14	292	1	.	0	0	0	0	0	-	61607887	TCC	-	61607885	7	5	52	1	0	1	0	1	0	0	0	0	5382	1783	62	0	408	0	FADS2	11	61607885	In_Frame_Del	DEL	TCC	TCGA-OR-A5LJ-01A-11D-A29I-10	4530767	61607885	73398631	377	10693										
SLC22A24	283238	ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	62850786	62850786	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	acaatatctggcttattcgaCgacccatatgattcagtgtc	7	10	2	1	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	.	NM_001136506	exon7	c.G1214A	p.R405H	ATTCGACGACCCA	.	153	129	175	2	.	0	0	0	0	0	T	62850786	C	T	62850786	3	4	52	1	0	0	0	0	1	0	0	0	14488	536	19	1	455	1	SLC22A24	11	62850786	Missense_Mutation	SNP	C	TCGA-OR-A5LJ-01A-11D-A29I-10	1242901	62850786	72155730	378	10694										
LGALS12	85329	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	63276041	63276041	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	tcaggtggttccttatgtcaCgacgatttttggaggcctgc	12	9	2	0	rs144263194	byfrequency	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	LGALS12-92	NM_001142535	exon2	c.C152T	p.T51M	ATGTCACGACGAT	.	70	56	139	0	C|1.000;T|0.000	0	0	0	0	0	T	63276041	C	T	63276041	3	4	52	1	0	0	0	0	1	0	0	0	8761	536	19	1	158	1	LGALS12	11	63276041	Missense_Mutation	SNP	C	TCGA-OR-A5LJ-01A-11D-A29I-10	425255	63276041	71730475	379	10695										
TM7SF2	7108	hgsc.bcm.edu	37	chr11	64880090	64880090	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	ggtccacccgcgtccctgccGgggctggaggtgctgtggag	18	13	0	0	rs4930284		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	TM7SF2-91	NM_003273	exon2	c.G156C	p.P52P	CCTGCCGGGGCTG	.	5	5	0	0	G|0.005;C|0.995	29	0	29	0	0	C	64880090	G	C	64880090	2	2	52	1	0	0	0	0	0	0	0	1	16011	1103	39	2		2	TM7SF2	11	64880090	Silent	SNP	G	TCGA-OR-A5LJ-01A-11D-A29I-10	1604049	64880090	70126426	380	10696										
LTBP3	4054	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	65319519	65319519	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	tgctggggcttgggtggcccGtcagggtgcaggaaaaggga	20	7	1	0	rs200551731		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	LTBP3-91	NM_001130144	exon8	c.C1455T	p.D485D	TGGCCCGTCAGGG	.	132	110	185	1	G|1.000;A|0.000	27	3	24	0	0	A	65319519	G	A	65319519	2	1	52	1	0	0	0	0	0	0	0	1	9102	1136	40	1		1	LTBP3	11	65319519	Silent	SNP	G	TCGA-OR-A5LJ-01A-11D-A29I-10	439429	65319519	69686997	381	10697										
RHOD	29984	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr11	66838933	66838933	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	agatggcgaggtccgtgggcGcggtggcctacctcgagtgc	18	11	0	1	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	RHOD-659	NM_014578	exon5	c.G493A	p.A165T	GTGGGCGCGGTGG	.	76	6	40	0	.	0	0	0	0	0	A	66838933	G	A	66838933	3	1	52	1	0	0	0	0	1	0	0	0	13372	1087	38	1	511	1	RHOD	11	66838933	Missense_Mutation	SNP	G	TCGA-OR-A5LJ-01A-11D-A29I-10	1519414	66838933	68167583	382	10698										
IGHMBP2	3508	broad.mit.edu	37	chr11	68682296	68682296	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	acttgcggttcccaggttctGtgctgcgccccctccaacat	9	16	1	0	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	IGHMBP2-90	NM_002180	exon6	c.G717A	p.L239L	GGTTCTGTGCTGC	.	87	4	126	1	.	0	0	0	0	0	A	68682296	G	A	68682296	2	1	52	1	0	0	0	0	0	0	0	1	7612	1364	48	3		3	IGHMBP2	11	68682296	Silent	SNP	G	TCGA-OR-A5LJ-01A-11D-A29I-10	1843363	68682296	66324220	383	10699										
KCTD21	283219	ucsc.edu;bcgsc.ca	37	chr11	77885257	77885257	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	tctgcacacgctggttcagtGtgatgttgagcatggcattc	12	9	2	2	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	KCTD21-69	NM_001029859	exon2	c.C344A	p.T115K	TTCAGTGTGATGT	.	70	59	141	2	.	4	0	4	0	0	T	77885257	G	T	77885257	3	4	52	1	0	0	0	0	1	0	0	0	8130	1377	48	3	442	3	KCTD21	11	77885257	Missense_Mutation	SNP	G	TCGA-OR-A5LJ-01A-11D-A29I-10	9202961	77885257	57121259	384	10700										
PICALM	8301	broad.mit.edu	37	chr11	85694914	85694914	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	attttttttccttacccccaGaatctacaataacatttgta	2	10	1	1	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	PICALM-659	NM_007166	exon14	c.C1511A	p.S504Y	CCCCCAGAATCTA	.	79	3	91	0	.	0	0	0	0	0	T	85694914	G	T	85694914	3	4	52	1	0	0	0	0	1	0	0	0	11909	942	33	3	503	3	PICALM	11	85694914	Missense_Mutation	SNP	G	TCGA-OR-A5LJ-01A-11D-A29I-10	7809657	85694914	49311602	385	10701										
FAT3	120114	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	92616519	92616519	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	tcaccctgccgctccgactgCgactccatccggaagaatgg	10	16	1	1	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	FAT3-73	NM_001008781	exon23	c.C12897T	p.C4299C	CGACTGCGACTCC	.	162	128	138	0	.	0	0	0	0	0	T	92616519	C	T	92616519	2	4	52	1	0	0	0	0	0	0	0	1	5710	776	27	1		1	FAT3	11	92616519	Silent	SNP	C	TCGA-OR-A5LJ-01A-11D-A29I-10	6921605	92616519	42389997	386	10702										
ATM	472	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	108138056	108138056	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	gcaaacgaacctggagagagCcaaagtaccataggtaaata	10	8	0	1	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	ATM-3419	NM_000051	exon17	c.C2625T	p.S875S	AGAGAGCCAAAGT	.	74	14	129	0	.	0	0	0	0	0	T	108138056	C	T	108138056	2	4	52	1	0	0	0	0	0	0	0	1	1110	738	26	3		3	ATM	11	108138056	Silent	SNP	C	TCGA-OR-A5LJ-01A-11D-A29I-10	15521537	108138056	26868460	387	10703										
DIXDC1	85458	broad.mit.edu;bcgsc.ca	37	chr11	111865744	111865744	+	Splice_Site	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	tttcttcatgctgctgtaggCgaccaactacaacagtcaca	7	12	3	0	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	DIXDC1-91	.	.	.	.	TGTAGGCGACCAA	.	71	5	104	0	.	0	0	0	0	0	T	111865744	C	T	111865744	5	4	52	1	0	0	0	0	0	0	1	0	4552	782	27	1	1523	1	DIXDC1	11	111865744	Splice_Site	SNP	C	TCGA-OR-A5LJ-01A-11D-A29I-10	3727688	111865744	23140772	388	10704										
C11orf57	55216	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr11	111953573	111953576	+	Frame_Shift_Del	DEL	AAAG	AAAG	-													0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	actaagaaaaccaaaaggaaAaagagagagaaaaaagccca					novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	AAAG	AAAG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	C11orf57-155	NM_001082969	exon6	c.759_762del	p.253_254del	AAGGAAAAAGAGA	.	22	19	31	0	.	0	0	0	0	0	-	111953576	AAAG	-	111953573	7	5	52	1	0	1	0	1	0	0	0	0	1654	11	1	0	777	0	C11orf57	11	111953573	Frame_Shift_Del	DEL	AAAG	TCGA-OR-A5LJ-01A-11D-A29I-10	87829	111953573	23052943	389	10705										
TIMM8B	26521	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	111956053	111956053	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	tctgtacaatctgggcaaacCgactggtgatggcaagagtg	13	8	2	2	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	TIMM8B-90	NM_012459	exon2	c.G263A	p.R88Q	GCAAACCGACTGG	.	96	81	148	1	.	106	6	99	1	0	T	111956053	C	T	111956053	3	4	52	1	0	0	0	0	1	0	0	0	15952	652	23	1	37	1	TIMM8B	11	111956053	Missense_Mutation	SNP	C	TCGA-OR-A5LJ-01A-11D-A29I-10	2480	111956053	23050463	390	10706										
DSCAML1	57453	broad.mit.edu;bcgsc.ca	37	chr11	117303148	117303148	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	ggtggtgcaaggagacgccaGtacagaagctctgtgggttg	17	7	1	2	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	DSCAML1-159	NM_020693	exon30	c.C5279T	p.T1760I	ACGCCAGTACAGA	.	140	6	225	0	.	0	0	0	0	0	A	117303148	G	A	117303148	3	1	52	1	0	0	0	0	1	0	0	0	4780	1029	36	3	1078	3	DSCAML1	11	117303148	Missense_Mutation	SNP	G	TCGA-OR-A5LJ-01A-11D-A29I-10	5347095	117303148	17703368	391	10707										
CD3D	915	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	118210583	118210583	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	atcagtgacaatgatgccagCcacggtggctggatccagct	12	11	1	2	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	CD3D-91	NM_000732	exon3	c.G313A	p.A105T	TGCCAGCCACGGT	.	161	134	235	0	.	6	6	0	0	0	T	118210583	C	T	118210583	3	4	52	1	0	0	0	0	1	0	0	0	3016	739	26	3	214	3	CD3D	11	118210583	Missense_Mutation	SNP	C	TCGA-OR-A5LJ-01A-11D-A29I-10	907435	118210583	16795933	392	10708										
TRIM29	23650	broad.mit.edu;bcgsc.ca	37	chr11	119983148	119983148	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	ggcttcgttggacccaatccCgttgcctttgttgacgtaga	11	11	0	2	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	TRIM29-291	NM_012101	exon9	c.G1741A	p.G581R	CAATCCCGTTGCC	.	334	8	497	1	.	0	0	0	0	0	T	119983148	C	T	119983148	3	4	52	1	0	0	0	0	1	0	0	0	16541	652	23	1	29	1	TRIM29	11	119983148	Missense_Mutation	SNP	C	TCGA-OR-A5LJ-01A-11D-A29I-10	1772565	119983148	15023368	393	10709										
GRIK4	2900	broad.mit.edu	37	chr11	120852883	120852883	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	gcttaatcgtggccatttttAtggctatgttggagttttta	10	5	0	0	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	GRIK4-92	NM_014619	exon18	c.A2464G	p.M822V	ATTTTTATGGCTA	.	54	3	102	0	.	7	7	0	0	0	G	120852883	A	G	120852883	3	3	52	1	0	0	0	0	1	0	0	0	6797	449	16	4	2534	4	GRIK4	11	120852883	Missense_Mutation	SNP	A	TCGA-OR-A5LJ-01A-11D-A29I-10	869735	120852883	14153633	394	10710										
VWF	7450	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	6230433	6230433	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	gctcccatcaaaggtgttgaCgaagtcacttccgaaaaggc	10	11	2	1	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	VWF-163	NM_000552	exon3	c.G127A	p.V43I	TGTTGACGAAGTC	.	266	131	225	0	.	2	2	0	0	0	T	6230433	C	T	6230433	3	4	52	1	0	0	0	0	1	0	0	0	17284	536	19	1	8514	1	VWF	12	6230433	Missense_Mutation	SNP	C	TCGA-OR-A5LJ-01A-11D-A29I-10		6230433	127621462	395	10711										
PLEKHG6	55200	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	6424203	6424203	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	gcccatgagctggaggtgagGctgcacactttcagcatgtt	13	10	1	2	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	PLEKHG6-295	NM_001144856	exon4	c.G327A	p.R109R	GGTGAGGCTGCAC	.	184	77	148	1	.	0	0	0	0	0	A	6424203	G	A	6424203	2	1	52	1	0	0	0	0	0	0	0	1	12103	1194	42	3		3	PLEKHG6	12	6424203	Silent	SNP	G	TCGA-OR-A5LJ-01A-11D-A29I-10	193770	6424203	127427692	396	10712										
GPR162	27239	bcgsc.ca	37	chr12	6933232	6933232	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	ctgctgctctgcttcctagcGggcacacacatactcatggc	9	15	2	0	rs141636256	byfrequency	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	GPR162-92	NM_019858	exon2	c.G168A	p.A56A	CCTAGCGGGCACA	.	151	59	121	2	G|1.000;A|0.000	9	9	0	0	0	A	6933232	G	A	6933232	2	1	52	1	0	0	0	0	0	0	0	1	6686	1103	39	1		1	GPR162	12	6933232	Silent	SNP	G	TCGA-OR-A5LJ-01A-11D-A29I-10	509029	6933232	126918663	397	10713										
CSDA	8531	hgsc.bcm.edu	37	chr12	10875525	10875525	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	gccgcggtgcccgtggctgcGggggccgcgtccccaccggg	19	17	0	0	rs1042085	byfrequency	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	CSDA-586	NM_003651	exon1	c.C186T	p.P62P	GGCTGCGGGGGCC	.	10	5	0	0	G|0.824;A|0.176	4	2	2	0	0	A	10875525	G	A	10875525	2	1	52	1	0	0	0	0	0	0	0	1	3933	1103	39	1		1	CSDA	12	10875525	Silent	SNP	G	TCGA-OR-A5LJ-01A-11D-A29I-10	3942293	10875525	122976370	398	10714										
KIAA1467	57613	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	13229066	13229066	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	caacaccaccggcacagtgaCggcttcagagggtgagtccc	12	14	1	3	rs142863695	byfrequency	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	KIAA1467-92	NM_020853	exon11	c.C1631T	p.T544M	CAGTGACGGCTTC	.	186	84	174	0	C|0.999;T|0.001	0	0	0	0	0	T	13229066	C	T	13229066	3	4	52	1	0	0	0	0	1	0	0	0	8256	536	19	1	1673	1	KIAA1467	12	13229066	Missense_Mutation	SNP	C	TCGA-OR-A5LJ-01A-11D-A29I-10	2353541	13229066	120622829	399	10715										
EPS8	2059	broad.mit.edu	37	chr12	15814975	15814975	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	cttaccacatctctgtcaatGcgggctgccatcatctcagg	8	14	4	0	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	EPS8-94	NM_004447	exon9	c.C795T	p.R265R	GTCAATGCGGGCT	.	118	4	83	0	.	1	1	0	0	0	A	15814975	G	A	15814975	2	1	52	1	0	0	0	0	0	0	0	1	5207	1306	46	3		3	EPS8	12	15814975	Silent	SNP	G	TCGA-OR-A5LJ-01A-11D-A29I-10	2585909	15814975	118036920	400	10716										
TM7SF3	51768	bcgsc.ca	37	chr12	27152534	27152534	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	agtccccaagtaccaagtgcAtgtactctgctctggtctaa	8	12	3	0	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	TM7SF3-92	NM_016551	exon3	c.T322C	p.C108R	AAGTGCATGTACT	.	236	7	157	1	.	4	4	0	0	0	G	27152534	A	G	27152534	3	3	52	1	0	0	0	0	1	0	0	0	16012	217	8	4	1430	4	TM7SF3	12	27152534	Missense_Mutation	SNP	A	TCGA-OR-A5LJ-01A-11D-A29I-10	11337559	27152534	106699361	401	10717										
CCNT1	904	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	49086936	49086936	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	cgaggattcagatagtcactAtaaggacgaacaaattcaaa	8	7	3	1	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	CCNT1-418	NM_001240	exon9	c.T2061C	p.Y687Y	GTCACTATAAGGA	.	226	84	149	0	.	5	4	1	0	0	G	49086936	A	G	49086936	2	3	52	1	0	0	0	0	0	0	0	1	2940	456	16	4		4	CCNT1	12	49086936	Silent	SNP	A	TCGA-OR-A5LJ-01A-11D-A29I-10	21934402	49086936	84764959	402	10718										
ADCY6	112	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	49170332	49170332	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	cccgctgtggatgcccacgcGcatgttcacattcacacctg	9	16	2	0	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	ADCY6-90	NM_020983	exon7	c.C1414T	p.R472C	CCACGCGCATGTT	.	95	37	85	0	.	11	7	4	0	0	A	49170332	G	A	49170332	3	1	52	1	0	0	0	0	1	0	0	0	298	1087	38	1	2156	1	ADCY6	12	49170332	Missense_Mutation	SNP	G	TCGA-OR-A5LJ-01A-11D-A29I-10	83396	49170332	84681563	403	10719										
FKBP11	51303	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr12	49318027	49318028	+	Frame_Shift_Del	DEL	CT	CT	-													0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	ccacacacatgtcgagaagaCtctgctccagaccttgaaga					novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	CT	CT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	FKBP11-226	NM_016594	exon4	c.295_296del	p.99_99del	AGAAGACTCTGCT	.	158	69	121	0	.	0	0	0	0	0	-	49318028	CT	-	49318027	7	5	52	1	0	1	0	1	0	0	0	0	5922	565	20	0	378	0	FKBP11	12	49318027	Frame_Shift_Del	DEL	CT	TCGA-OR-A5LJ-01A-11D-A29I-10	147695	49318027	84533868	404	10720										
ARF3	377	bcgsc.ca	37	chr12	49333524	49333524	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	ctcttcccgggcctcatttaCtcgctcccgatcattgctgt	7	16	3	0	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	ARF3-227	NM_001659	exon4	c.G298A	p.V100I	CATTTACTCGCTC	.	248	7	211	0	.	133	128	5	0	0	T	49333524	C	T	49333524	3	4	52	1	0	0	0	0	1	0	0	0	845	565	20	3	255	3	ARF3	12	49333524	Missense_Mutation	SNP	C	TCGA-OR-A5LJ-01A-11D-A29I-10	15497	49333524	84518371	405	10721										
C1QL4	338761	broad.mit.edu	37	chr12	49729769	49729769	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	cacatgctggtgccgtcgccGccgcgcatgagcacgtggta	14	14	0	1	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	C1QL4-90	NM_001008223	exon1	c.C492T	p.G164G	GTCGCCGCCGCGC	.	165	6	123	0	.	0	0	0	0	0	A	49729769	G	A	49729769	2	1	52	1	0	0	0	0	0	0	0	1	1967	1074	38	1		1	C1QL4	12	49729769	Silent	SNP	G	TCGA-OR-A5LJ-01A-11D-A29I-10	396245	49729769	84122126	406	10722										
CSRNP2	81566	broad.mit.edu;bcgsc.ca	37	chr12	51457707	51457707	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	cagggttacaatcttcgggcAatagagcttctagggtgggt	14	7	2	1	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	CSRNP2-90	NM_030809	exon5	c.T1454C	p.L485S	TCGGGCAATAGAG	.	157	7	96	0	.	47	46	1	0	0	G	51457707	A	G	51457707	3	3	52	1	0	0	0	0	1	0	0	0	3970	131	5	4	181	4	CSRNP2	12	51457707	Missense_Mutation	SNP	A	TCGA-OR-A5LJ-01A-11D-A29I-10	1727938	51457707	82394188	407	10723										
KRT71	112802	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	52946699	52946699	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	actggccacattgaggctccGgacaccccccaggctgtaga	11	15	0	2	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	KRT71-92	NM_033448	exon1	c.C163T	p.R55W	GGCTCCGGACACC	.	96	9	70	1	.	0	0	0	0	0	A	52946699	G	A	52946699	3	1	52	1	0	0	0	0	1	0	0	0	8505	1115	39	1	1444	1	KRT71	12	52946699	Missense_Mutation	SNP	G	TCGA-OR-A5LJ-01A-11D-A29I-10	1488992	52946699	80905196	408	10724										
KRT76	51350	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	53170942	53170942	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	tgcctgctccgctcctgaagCcacaggcccctccaccagct	8	20	0	1	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	KRT76-154	NM_015848	exon1	c.G134A	p.G45D	CTGAAGCCACAGG	.	124	56	124	0	.	0	0	0	0	0	T	53170942	C	T	53170942	3	4	52	1	0	0	0	0	1	0	0	0	8510	739	26	3	1818	3	KRT76	12	53170942	Missense_Mutation	SNP	C	TCGA-OR-A5LJ-01A-11D-A29I-10	224243	53170942	80680953	409	10725										
SOAT2	8435	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr12	53497419	53497419	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	cagaagggctgggaggggagCgggagcgccaaccctgtgga	20	9	0	1	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	SOAT2-91	NM_003578	exon1	c.C58T	p.R20W	GGGGAGCGGGAGC	.	101	8	40	0	.	0	0	0	0	0	T	53497419	C	T	53497419	3	4	52	1	0	0	0	0	1	0	0	0	14946	759	27	1	60	1	SOAT2	12	53497419	Missense_Mutation	SNP	C	TCGA-OR-A5LJ-01A-11D-A29I-10	326477	53497419	80354476	410	10726										
MAP3K12	7786	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	53876621	53876621	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	agctccgcctgtggccccccGgccccgggaccctagtgctg	13	19	0	0	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	MAP3K12-604	NM_001193511	exon11	c.C1966T	p.R656W	CCCCCCGGCCCCG	.	54	8	26	0	.	17	12	5	0	0	A	53876621	G	A	53876621	3	1	52	1	0	0	0	0	1	0	0	0	9274	1115	39	1	728	1	MAP3K12	12	53876621	Missense_Mutation	SNP	G	TCGA-OR-A5LJ-01A-11D-A29I-10	379202	53876621	79975274	411	10727										
ATF7	11016	bcgsc.ca	37	chr12	53946410	53946410	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	tgaactgccaggtggtcctcGtttgtaaatctctgaaacga	10	9	1	2	rs33921258	byfrequency	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	ATF7-455	NM_001130060	exon3	c.C60T	p.N20N	GTCCTCGTTTGTA	.	125	56	80	2	G|0.934;A|0.066	0	0	0	0	0	A	53946410	G	A	53946410	2	1	52	1	0	0	0	0	0	0	0	1	1087	1136	40	1		1	ATF7	12	53946410	Silent	SNP	G	TCGA-OR-A5LJ-01A-11D-A29I-10	69789	53946410	79905485	412	10728										
NACA	4666	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr12	57113563	57113564	+	Frame_Shift_Del	DEL	AG	AG	-													0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	ctagggtggcttcaggagaaAgaggtatctctggagaagag					novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	AG	AG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	NACA-254	NM_001113203	exon3	c.1750_1751del	p.584_584del	GGAGAAAGAGGTA	.	104	42	82	0	.	0	0	0	0	0	-	57113564	AG	-	57113563	7	5	52	1	0	1	0	1	0	0	0	0	10161	72	3	0	4513	0	NACA	12	57113563	Frame_Shift_Del	DEL	AG	TCGA-OR-A5LJ-01A-11D-A29I-10	3167153	57113563	76738332	413	10729										
TAC3	6866	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr12	57409529	57409530	+	Frame_Shift_Del	DEL	CT	CT	-													0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	ccttacagacagccccaaagCtctgagctaggctgaaggcc					novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	CT	CT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	TAC3-92	NM_013251	exon2	c.52_53del	p.18_18del	CCAAAGCTCTGAG	.	111	52	88	0	.	0	0	0	0	0	-	57409530	CT	-	57409529	7	5	52	1	0	1	0	1	0	0	0	0	15536	797	28	0	332	0	TAC3	12	57409529	Frame_Shift_Del	DEL	CT	TCGA-OR-A5LJ-01A-11D-A29I-10	295966	57409529	76442366	414	10730										
KIF5A	3798	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	57963112	57963112	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	tctcgggggaaactgccggaCgactatgttcatctgttgct	12	10	3	0	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	KIF5A-517	NM_004984	exon10	c.C893T	p.T298M	GCCGGACGACTAT	.	156	69	120	0	.	1	0	1	0	0	T	57963112	C	T	57963112	3	4	52	1	0	0	0	0	1	0	0	0	8326	536	19	1	931	1	KIF5A	12	57963112	Missense_Mutation	SNP	C	TCGA-OR-A5LJ-01A-11D-A29I-10	553583	57963112	75888783	415	10731										
SLC16A7	9194	broad.mit.edu	37	chr12	60173233	60173233	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	tggatttaactggagaatatAaatacatgtacatgtcctgt	8	5	0	1	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	SLC16A7-91	NM_001270622	exon6	c.A1210G	p.K404E	GAATATAAATACA	.	56	5	36	0	.	1	1	0	0	0	G	60173233	A	G	60173233	3	3	52	1	0	0	0	0	1	0	0	0	14448	363	13	4	1224	4	SLC16A7	12	60173233	Missense_Mutation	SNP	A	TCGA-OR-A5LJ-01A-11D-A29I-10	2210121	60173233	73678662	416	10732										
BEST3	144453	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr12	70049362	70049362	+	Frame_Shift_Del	DEL	G	G	-													0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	ttccaggtgggtgaggccctGggggggtttcttgagggcac					novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	BEST3-248	NM_032735	exon10	c.1332delC	p.P444fs	GGCCCTGGGGGGG	.	59	17	46	0	.	0	0	0	0	0	-	70049362	G	-	70049362	7	5	52	1	0	1	0	1	0	0	0	0	1407	1335	47	0	678	0	BEST3	12	70049362	Frame_Shift_Del	DEL	G	TCGA-OR-A5LJ-01A-11D-A29I-10	9876129	70049362	63802533	417	10733										
ZDHHC17	23390	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr12	77222254	77222255	+	Frame_Shift_Ins	INS	-	-	T													0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	ggatgtatgtgacgtggttcINSttctggttttggaatgatat					novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	.	NM_015336	exon10	c.1125_1126insT	p.F375fs	GTGGTTCTTCTGG	.	108	41	114	0	.	0	0	0	0	0	T	77222255	-	T	77222254	7	5	52	1	0	1	1	0	0	0	0	0	17644	912	32	0	1163	0	ZDHHC17	12	77222254	Frame_Shift_Ins	INS	-	TCGA-OR-A5LJ-01A-11D-A29I-10	7172892	77222254	56629641	418	10734										
NAV3	89795	broad.mit.edu	37	chr12	78400316	78400316	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	aagtgccagcaagccctggcGcagcaagtccatgaatgtca	11	12	1	1	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	NAV3-279	NM_014903	exon8	c.G998A	p.R333H	CCTGGCGCAGCAA	.	214	6	174	1	.	0	0	0	0	0	A	78400316	G	A	78400316	3	1	52	1	0	0	0	0	1	0	0	0	10213	1087	38	1	1028	1	NAV3	12	78400316	Missense_Mutation	SNP	G	TCGA-OR-A5LJ-01A-11D-A29I-10	1178062	78400316	55451579	419	10735										
CEP290	80184	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr12	88508192	88508210	+	Frame_Shift_Del	DEL	CTTACATTAACTAGTCTTT	CTTACATTAACTAGTCTTT	-													0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	cattaacatgaaaaaaataaCttacattaactagtctttca					novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	CTTACATTAACTAGTCTTT	CTTACATTAACTAGTCTTT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	CEP290-96	NM_025114	exon20	c.2039_2052del	p.680_684del	AAATAACTTACAT	.	41	9	40	0	.	0	0	0	0	0	-	88508210	CTTACATTAACTAGTCTTT	-	88508192	7	5	52	1	0	1	0	1	0	0	0	0	3259	580	20	0		0	CEP290	12	88508192	Frame_Shift_Del	DEL	CTTACATTAACTAGTCTTT	TCGA-OR-A5LJ-01A-11D-A29I-10	10107876	88508192	45343703	420	10736										
GNPTAB	79158	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	102158675	102158675	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	tctcttaaacttcgggaagcGtttttctttgggaatatcct	8	8	2	0	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	GNPTAB-92	NM_024312	exon13	c.C2020T	p.R674C	GGAAGCGTTTTTC	.	35	16	23	0	.	3	1	2	0	0	A	102158675	G	A	102158675	3	1	52	1	0	0	0	0	1	0	0	0	6565	1145	40	1	1786	1	GNPTAB	12	102158675	Missense_Mutation	SNP	G	TCGA-OR-A5LJ-01A-11D-A29I-10	13650483	102158675	31693220	421	10737										
IFT81	28981	bcgsc.ca	37	chr12	110630488	110630488	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	cctcagttataaaagagctaCgacagttgcgtcaaaaatat	7	8	2	1	rs200335504		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	IFT81-91	NM_014055	exon14	c.C1534T	p.R512X	GAGCTACGACAGT	.	201	64	156	4	.	7	7	0	0	0	T	110630488	C	T	110630488	4	4	52	1	0	0	0	0	0	1	0	0	7586	528	19	1	1696	1	IFT81	12	110630488	Nonsense_Mutation	SNP	C	TCGA-OR-A5LJ-01A-11D-A29I-10	8471813	110630488	23221407	422	10738										
ATP2A2	488	hgsc.bcm.edu;bcgsc.ca	37	chr12	110784062	110784064	+	In_Frame_Del	DEL	CTC	CTC	-													0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	tggctgatggtgctgaaaatCtccttgcccgtgattctcat					novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	CTC	CTC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	ATP2A2-94	NM_001681	exon20	c.2916_2918del	p.972_973del	GAAAATCTCCTTG	.	268	107	200	0	.	0	0	0	0	0	-	110784064	CTC	-	110784062	7	5	52	1	0	1	0	1	0	0	0	0	1138	903	32	0	2994	0	ATP2A2	12	110784062	In_Frame_Del	DEL	CTC	TCGA-OR-A5LJ-01A-11D-A29I-10	153574	110784062	23067833	423	10739										
OAS3	4940	bcgsc.ca	37	chr12	113400607	113400607	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	tccggacggtgctggggctcGtgcaacagcatcagcagctc	14	13	1	0	rs201723513		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	OAS3-1	NM_006187	exon9	c.G1984A	p.V662M	GGGCTCGTGCAAC	.	280	129	245	4	.	4	1	3	0	0	A	113400607	G	A	113400607	3	1	52	1	0	0	0	0	1	0	0	0	10830	1145	40	1	2018	1	OAS3	12	113400607	Missense_Mutation	SNP	G	TCGA-OR-A5LJ-01A-11D-A29I-10	2616545	113400607	20451288	424	10740										
MLEC	9761	hgsc.bcm.edu;bcgsc.ca	37	chr12	121132922	121132923	+	Frame_Shift_Del	DEL	TG	TG	-													0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	actatgacaatcccaaggtcTgtgcactctacatcatggct					novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	TG	TG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	MLEC-91	NM_014730	exon4	c.616_617del	p.206_206del	AAGGTCTGTGCAC	.	61	49	119	1	.	0	0	0	0	0	-	121132923	TG	-	121132922	7	5	52	1	0	1	0	1	0	0	0	0	9641	1580	55	0	630	0	MLEC	12	121132922	Frame_Shift_Del	DEL	TG	TCGA-OR-A5LJ-01A-11D-A29I-10	7732315	121132922	12718973	425	10741										
P2RX7	5027	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	121622497	121622497	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	gccacctggcgcttcggctcCcaggacatggctgactttgc	12	15	0	1	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	P2RX7-268	NM_002562	exon13	c.C1680A	p.S560S	CGGCTCCCAGGAC	.	132	41	184	0	.	4	3	1	0	0	A	121622497	C	A	121622497	2	1	52	1	0	0	0	0	0	0	0	1	11374	610	22	3		3	P2RX7	12	121622497	Silent	SNP	C	TCGA-OR-A5LJ-01A-11D-A29I-10	489575	121622497	12229398	426	10742										
KNTC1	9735	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	123089580	123089580	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	atcttattgtcagtctctacGaacatcctagcatcaatcaa	4	11	5	0	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	KNTC1-543	NM_014708	exon50	c.G5332A	p.E1778K	CTCTACGAACATC	.	95	50	89	0	.	4	1	3	0	0	A	123089580	G	A	123089580	3	1	52	1	0	0	0	0	1	0	0	0	8449	1059	37	1	5526	1	KNTC1	12	123089580	Missense_Mutation	SNP	G	TCGA-OR-A5LJ-01A-11D-A29I-10	1467083	123089580	10762315	427	10743										
ARL6IP4	51329	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr12	123466588	123466588	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	tgcccggcagagcatcatccGcaaggtggtggaccctgaga	14	12	1	2	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	ARL6IP4-90	NM_018694	exon4	c.G923A	p.R308H	TCATCCGCAAGGT	.	114	12	167	0	.	404	356	47	0	1	A	123466588	G	A	123466588	3	1	52	1	0	0	0	0	1	0	0	0	944	1087	38	1	937	1	ARL6IP4	12	123466588	Missense_Mutation	SNP	G	TCGA-OR-A5LJ-01A-11D-A29I-10	377008	123466588	10385307	428	10744										
RIMBP2	23504	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	130912861	130912861	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	gctgctctctgtgtggtactCgtctccatggcaacagtgcg	12	12	2	0	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	RIMBP2-142	NM_015347	exon12	c.G2224A	p.E742K	GGTACTCGTCTCC	.	74	68	106	0	.	5	0	5	0	0	T	130912861	C	T	130912861	3	4	52	1	0	0	0	0	1	0	0	0	13398	893	31	1	966	1	RIMBP2	12	130912861	Missense_Mutation	SNP	C	TCGA-OR-A5LJ-01A-11D-A29I-10	7446273	130912861	2939034	429	10745										
EP400	57634	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	132504663	132504663	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	gctttccccagcactcacccGccccggacggcagcccccac	8	23	1	0	rs150248915	byfrequency	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	EP400-520	NM_015409	exon22	c.G4347A	p.P1449P	TCACCCGCCCCGG	.	80	62	22	0	G|0.999;A|0.001	11	0	11	0	0	A	132504663	G	A	132504663	2	1	52	1	0	0	0	0	0	0	0	1	5162	1074	38	1		1	EP400	12	132504663	Silent	SNP	G	TCGA-OR-A5LJ-01A-11D-A29I-10	1591802	132504663	1347232	430	10746										
ATP12A	479	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr13	25262636	25262636	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	tatgggattcagtactccagCgacaagtctgcatccctgaa	9	11	2	1	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	ATP12A-137	NM_001185085	exon4	c.C408T	p.S136S	CTCCAGCGACAAG	.	37	32	62	0	.	0	0	0	0	0	T	25262636	C	T	25262636	2	4	52	1	0	0	0	0	0	0	0	1	1123	767	27	1		1	ATP12A	13	25262636	Silent	SNP	C	TCGA-OR-A5LJ-01A-11D-A29I-10		25262636	89907242	431	10747										
PABPC3	5042	ucsc.edu	37	chr13	25671755	25671755	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	gttccacgagtcatgtcaacGcagcgtgttgctaacacatc	9	12	2	0	rs116223079	byfrequency	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	PABPC3-72	NM_030979	exon1	c.G1419A	p.T473T	GTCAACGCAGCGT	.	99	18	154	3	G|0.977;A|0.023	2358	1	2353	4	0	A	25671755	G	A	25671755	2	1	52	1	0	0	0	0	0	0	0	1	11394	1074	38	1		1	PABPC3	13	25671755	Silent	SNP	G	TCGA-OR-A5LJ-01A-11D-A29I-10	409119	25671755	89498123	432	10748										
PABPC3	5042	ucsc.edu	37	chr13	25671786	25671786	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	ctaacacatcaacacagacaGtgggtccacgtcctgcagct	8	14	1	1	rs113301206	byfrequency	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	PABPC3-72	NM_030979	exon1	c.G1450A	p.V484M	CAGACAGTGGGTC	.	95	17	142	4	G|0.994;A|0.006	1207	1	1206	0	0	A	25671786	G	A	25671786	3	1	52	1	0	0	0	0	1	0	0	0	11394	1029	36	3	1452	3	PABPC3	13	25671786	Missense_Mutation	SNP	G	TCGA-OR-A5LJ-01A-11D-A29I-10	31	25671786	89498092	433	10749										
RASL11A	387496	broad.mit.edu;bcgsc.ca	37	chr13	27847563	27847563	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	ggccccgctctcccaacatgCaggacctgaagagacgcttc	10	16	1	2	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	RASL11A-522	NM_206827	exon4	c.C661T	p.Q221X	AACATGCAGGACC	.	181	7	245	0	.	12	12	0	0	0	T	27847563	C	T	27847563	4	4	52	1	0	0	0	0	0	1	0	0	13116	711	25	3	675	3	RASL11A	13	27847563	Nonsense_Mutation	SNP	C	TCGA-OR-A5LJ-01A-11D-A29I-10	2175777	27847563	87322315	434	10750										
FREM2	341640	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr13	39264775	39264775	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	gctgaagatgtcgactccctGaatgatgacatcttgtgcac	10	10	1	5	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	FREM2-100	NM_207361	exon1	c.G3294T	p.L1098L	CTCCCTGAATGAT	.	22	6	40	0	.	0	0	0	0	0	T	39264775	G	T	39264775	2	4	52	1	0	0	0	0	0	0	0	1	6064	1277	45	3		3	FREM2	13	39264775	Silent	SNP	G	TCGA-OR-A5LJ-01A-11D-A29I-10	11417212	39264775	75905103	435	10751										
LHFP	10186	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr13	39952603	39952603	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	aagtgtagccacaagtctgcCggacttcctcactgtcccag	9	14	2	0	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	LHFP-683	NM_005780	exon3	c.G446A	p.R149Q	GTCTGCCGGACTT	.	61	46	80	0	.	12	8	4	0	0	T	39952603	C	T	39952603	3	4	52	1	0	0	0	0	1	0	0	0	8786	652	23	1	164	1	LHFP	13	39952603	Missense_Mutation	SNP	C	TCGA-OR-A5LJ-01A-11D-A29I-10	687828	39952603	75217275	436	10752										
EBPL	84650	broad.mit.edu	37	chr13	50235138	50235138	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	tcactgaactggtttctttcTgatgcattttcttgagttct	7	8	5	3	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	EBPL-90	NM_032565	exon4	c.A587C	p.Q196P	TCTTTCTGATGCA	.	105	3	137	0	.	84	84	0	0	0	G	50235138	T	G	50235138	3	3	52	1	0	0	0	0	1	0	0	0	4898	1580	55	5	37	5	EBPL	13	50235138	Missense_Mutation	SNP	T	TCGA-OR-A5LJ-01A-11D-A29I-10	10282535	50235138	64934740	437	10753										
PCDH8	5100	hgsc.bcm.edu	37	chr13	53420056	53420056	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	cggcgaccgcaggcggaggcGcgtccgccgcggggctgcca	19	16	0	0	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	PCDH8-153	NM_002590	exon1	c.C2516T	p.A839V	GGAGGCGCGTCCG	.	5	5	0	0	.	0	0	0	0	0	A	53420056	G	A	53420056	3	1	52	1	0	0	0	0	1	0	0	0	11546	1087	38	1	708	1	PCDH8	13	53420056	Missense_Mutation	SNP	G	TCGA-OR-A5LJ-01A-11D-A29I-10	3184918	53420056	61749822	438	10754										
SCEL	8796	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr13	78211275	78211275	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	taaatcacccaaggatggatAtcaggagaatatctctggaa	9	7	3	1	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	SCEL-95	NM_144777	exon30	c.A1784T	p.Y595F	ATGGATATCAGGA	.	42	7	39	0	.	0	0	0	0	0	T	78211275	A	T	78211275	3	4	52	1	0	0	0	0	1	0	0	0	13923	449	16	5	1898	5	SCEL	13	78211275	Missense_Mutation	SNP	A	TCGA-OR-A5LJ-01A-11D-A29I-10	24791219	78211275	36958603	439	10755										
ABCC4	10257	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr13	95830011	95830011	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	tctactgcactgagaggatcGtccaggagatagatgtcagc	12	9	2	3	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	ABCC4-515	NM_005845	exon13	c.C1677T	p.D559D	AGGATCGTCCAGG	.	127	35	172	0	.	0	0	0	0	0	A	95830011	G	A	95830011	2	1	52	1	0	0	0	0	0	0	0	1	55	1136	40	1		1	ABCC4	13	95830011	Silent	SNP	G	TCGA-OR-A5LJ-01A-11D-A29I-10	17618736	95830011	19339867	440	10756										
COL4A1	1282	hgsc.bcm.edu;broad.mit.edu	37	chr13	110804812	110804812	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	tccaggcaggagccgggggaCgccagggcttggccagagcc	18	13	0	1	rs146638269	byfrequency	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	COL4A1-654	NM_001845	exon51	c.G4797A	p.A1599A	GGGGGACGCCAGG	.	89	4	142	0	C|1.000;T|0.000	60	60	0	0	0	T	110804812	C	T	110804812	2	4	52	1	0	0	0	0	0	0	0	1	3695	523	19	1		1	COL4A1	13	110804812	Silent	SNP	C	TCGA-OR-A5LJ-01A-11D-A29I-10	14974801	110804812	4365066	441	10757										
OR4Q3	441669	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr14	20216029	20216029	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	atgcctttggttggttcttgCctgctggtgtgggggtttta	15	6	1	0	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	OR4Q3-71	NM_172194	exon1	c.C443T	p.A148V	TTCTTGCCTGCTG	.	342	26	508	0	.	0	0	0	0	0	T	20216029	C	T	20216029	3	4	52	1	0	0	0	0	1	0	0	0	11110	739	26	3	445	3	OR4Q3	14	20216029	Missense_Mutation	SNP	C	TCGA-OR-A5LJ-01A-11D-A29I-10		20216029	87133511	442	10758										
OR4K2	390431	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr14	20345046	20345046	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	ctcaacaagtggcataattgCgttgtcctgttttattgttt	8	7	1	0	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	OR4K2-72	NM_001005501	exon1	c.C620T	p.A207V	TAATTGCGTTGTC	.	206	57	254	0	.	0	0	0	0	0	T	20345046	C	T	20345046	3	4	52	1	0	0	0	0	1	0	0	0	11101	768	27	1	622	1	OR4K2	14	20345046	Missense_Mutation	SNP	C	TCGA-OR-A5LJ-01A-11D-A29I-10	129017	20345046	87004494	443	10759										
CMA1	1215	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr14	24976583	24976583	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	ttcctgcacaatgagcagccGtcagcacaaagttccgtctt	8	13	2	1	rs13306251		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	CMA1-90	NM_001836	exon2	c.C188T	p.T63M	GCAGCCGTCAGCA	.	101	75	109	1	G|0.163;T|0.000	0	0	0	0	0	A	24976583	G	A	24976583	3	1	52	1	0	0	0	0	1	0	0	0	3580	1145	40	1	571	1	CMA1	14	24976583	Missense_Mutation	SNP	G	TCGA-OR-A5LJ-01A-11D-A29I-10	4631537	24976583	82372957	444	10760										
VSX2	338917	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr14	74711911	74711911	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	tagaggagctggagaaggcaTtcaacgaagcccactaccca	11	11	1	2	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	VSX2-69	NM_182894	exon3	c.T499G	p.F167V	AAGGCATTCAACG	.	112	9	142	0	.	0	0	0	0	0	G	74711911	T	G	74711911	3	3	52	1	0	0	0	0	1	0	0	0	17270	1493	52	5	509	5	VSX2	14	74711911	Missense_Mutation	SNP	T	TCGA-OR-A5LJ-01A-11D-A29I-10	49735328	74711911	32637629	445	10761										
TDP1	55775	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr14	90450919	90450919	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	aacccacaaatctggagagtCgccaacacattttaaagctg	7	11	1	1	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	TDP1-92	NM_018319	exon9	c.C944T	p.S315L	GAGAGTCGCCAAC	.	37	30	52	0	.	1	0	1	0	0	T	90450919	C	T	90450919	3	4	52	1	0	0	0	0	1	0	0	0	15765	893	31	1	970	1	TDP1	14	90450919	Missense_Mutation	SNP	C	TCGA-OR-A5LJ-01A-11D-A29I-10	15739008	90450919	16898621	446	10762										
DYNC1H1	1778	bcgsc.ca	37	chr14	102508056	102508056	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	cagccgctcgacctgacccaCattgtgggcacagaggtaat	11	13	0	2	rs10129889	byfrequency	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	DYNC1H1-98	NM_001376	exon65	c.C12087A	p.H4029Q	GACCCACATTGTG	.	84	5	143	1	C|0.882;A|0.118	85	85	0	0	0	A	102508056	C	A	102508056	3	1	52	1	0	0	0	0	1	0	0	0	4852	477	17	3	12345	3	DYNC1H1	14	102508056	Missense_Mutation	SNP	C	TCGA-OR-A5LJ-01A-11D-A29I-10	12057137	102508056	4841484	447	10763										
TDRD9	122402	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr14	104481118	104481118	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	tcacagttcaacatgcatgtTgattctcggcgacctgtcat	8	11	4	1	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	TDRD9-70	NM_153046	exon21	c.T2163C	p.V721V	GCATGTTGATTCT	.	48	39	57	0	.	0	0	0	0	0	C	104481118	T	C	104481118	2	2	52	1	0	0	0	0	0	0	0	1	15773	1799	63	4		4	TDRD9	14	104481118	Silent	SNP	T	TCGA-OR-A5LJ-01A-11D-A29I-10	1973062	104481118	2868422	448	10764										
KIF26A	26153	hgsc.bcm.edu	37	chr14	104644099	104644099	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	caccacagcggtggcagcagTggctatgagagcctgcggcg	16	12	0	1	rs2497297	byfrequency	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	KIF26A-24	NM_015656	exon12	c.T4974C	p.S1658S	CAGCAGTGGCTAT	.	5	5	0	0	T|0.603;C|0.397	10	0	10	0	0	C	104644099	T	C	104644099	2	2	52	1	0	0	0	0	0	0	0	1	8315	1693	59	4		4	KIF26A	14	104644099	Silent	SNP	T	TCGA-OR-A5LJ-01A-11D-A29I-10	162981	104644099	2705441	449	10765										
AHNAK2	113146	ucsc.edu;bcgsc.ca	37	chr14	105409902	105409902	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	ttgaacttgctgtctttggcCgtcatgtccttgtcggccag	11	11	2	1	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	AHNAK2-47	NM_138420	exon7	c.G11886A	p.T3962T	TTTGGCCGTCATG	.	164	123	355	3	.	0	0	0	0	0	T	105409902	C	T	105409902	2	4	52	1	0	0	0	0	0	0	0	1	415	639	23	1		1	AHNAK2	14	105409902	Silent	SNP	C	TCGA-OR-A5LJ-01A-11D-A29I-10	765803	105409902	1939638	450	10766										
OR4M2	390538	bcgsc.ca	37	chr15	22369046	22369046	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	gggggcttcattcattctatCatacaggtggctctcattgt	10	9	5	0	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	OR4M2-69	NM_001004719	exon1	c.C471T	p.I157I	TTCTATCATACAG	.	733	29	1141	2	.	0	0	0	0	0	T	22369046	C	T	22369046	2	4	52	1	0	0	0	0	0	0	0	1	11105	816	29	3		3	OR4M2	15	22369046	Silent	SNP	C	TCGA-OR-A5LJ-01A-11D-A29I-10		22369046	80162346	451	10767										
MTMR10	54893	broad.mit.edu	37	chr15	31269078	31269078	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	tttgaagttactgcatatcaGctttccccacaaatcgtact	5	11	1	1	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	MTMR10-91	NM_017762	exon3	c.C202T	p.L68L	ATATCAGCTTTCC	.	102	3	129	0	.	0	0	0	0	0	A	31269078	G	A	31269078	2	1	52	1	0	0	0	0	0	0	0	1	9967	962	34	3		3	MTMR10	15	31269078	Silent	SNP	G	TCGA-OR-A5LJ-01A-11D-A29I-10	8900032	31269078	71262314	452	10768										
FMN1	342184	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	33358991	33358991	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	cccatctcttctctcctgggCgactcagggtctgctccctt	8	17	4	0	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	FMN1-23	NM_001103184	exon1	c.G1095A	p.S365S	CCTGGGCGACTCA	.	72	10	124	0	.	0	0	0	0	0	T	33358991	C	T	33358991	2	4	52	1	0	0	0	0	0	0	0	1	5968	755	27	1		1	FMN1	15	33358991	Silent	SNP	C	TCGA-OR-A5LJ-01A-11D-A29I-10	2089913	33358991	69172401	453	10769										
ZFYVE19	84936	broad.mit.edu;bcgsc.ca	37	chr15	41106184	41106185	+	Frame_Shift_Ins	INS	-	-	C													0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	gaggctgaggaagaggagctINScccctggtgctgcatctgca					novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	ZFYVE19-91	NM_001077268	exon10	c.1253_1254insC	p.L418fs	AGGAGCTCCCCTG	.	72	8	156	0	.	0	0	0	0	0	C	41106185	-	C	41106184	7	5	52	1	0	1	1	0	0	0	0	0	17702	1551	54	0	1291	0	ZFYVE19	15	41106184	Frame_Shift_Ins	INS	-	TCGA-OR-A5LJ-01A-11D-A29I-10	7747193	41106184	61425208	454	10770										
JMJD7-PLA2G4B	8681	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr15	42137956	42137956	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	gaagaggcttcctgagtcccGcatctgcttcttagaaggtg	12	10	2	3	rs150220260		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	JMJD7-PLA2G4B-135	NM_005090	exon20	c.G2171A	p.R724H	AGTCCCGCATCTG	.	35	26	65	0	G|1.000;A|0.000	17	1	16	0	0	A	42137956	G	A	42137956	3	1	52	1	0	0	0	0	1	0	0	0	7976	1087	38	1	2249	1	JMJD7-PLA2G4B	15	42137956	Missense_Mutation	SNP	G	TCGA-OR-A5LJ-01A-11D-A29I-10	1031772	42137956	60393436	455	10771										
SCG3	29106	broad.mit.edu	37	chr15	52011690	52011690	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	atccttgacaaggaagaagcCgaggccatcaagcgcattta	10	10	1	2	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	SCG3-91	NM_013243	exon12	c.C1374T	p.A458A	AGAAGCCGAGGCC	.	74	3	75	0	.	0	0	0	0	0	T	52011690	C	T	52011690	2	4	52	1	0	0	0	0	0	0	0	1	13927	639	23	1		1	SCG3	15	52011690	Silent	SNP	C	TCGA-OR-A5LJ-01A-11D-A29I-10	9873734	52011690	50519702	456	10772										
LACTB	114294	hgsc.bcm.edu	37	chr15	63414083	63414083	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	gagacgccatgtaccggctcAtgtcagcagtgactgcccgg	13	13	2	2	rs34317102	byfrequency	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	LACTB-90	NM_171846	exon1	c.A13C	p.M5L	CGGCTCATGTCAG	.	4	4	0	0	A|0.226;C|0.774	0	0	0	0	0	C	63414083	A	C	63414083	3	2	52	1	0	0	0	0	1	0	0	0	8619	217	8	5	15	5	LACTB	15	63414083	Missense_Mutation	SNP	A	TCGA-OR-A5LJ-01A-11D-A29I-10	11402393	63414083	39117309	457	10773										
DENND4A	10260	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr15	65995235	65995235	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	tttgttcttctgaacatgggCaaagggctattaggactact	10	7	2	1	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	DENND4A-229	NM_001144823	exon16	c.G2199A	p.L733L	CATGGGCAAAGGG	.	34	31	67	0	.	4	0	4	0	0	T	65995235	C	T	65995235	2	4	52	1	0	0	0	0	0	0	0	1	4444	709	25	3		3	DENND4A	15	65995235	Silent	SNP	C	TCGA-OR-A5LJ-01A-11D-A29I-10	2581152	65995235	36536157	458	10774										
CLK3	1198	bcgsc.ca	37	chr15	74921337	74921337	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	tgggatgagaacagctctgaCggccggtatgtgaaggagaa	16	6	1	4	rs192164311		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	CLK3-358	NM_001130028	exon12	c.C1704T	p.D568D	CTCTGACGGCCGG	.	121	5	127	1	C|0.999;T|0.000	77	76	1	0	0	T	74921337	C	T	74921337	2	4	52	1	0	0	0	0	0	0	0	1	3544	535	19	1		1	CLK3	15	74921337	Silent	SNP	C	TCGA-OR-A5LJ-01A-11D-A29I-10	8926102	74921337	27610055	459	10775										
FBXO22	26263	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr15	76225297	76225297	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	ttcctagtgttcccttattcGgcttctttggaaatggagaa	9	8	1	1	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	FBXO22-658	NM_147188	exon7	c.G1066A	p.G356S	TTATTCGGCTTCT	.	98	23	98	0	.	27	24	3	0	0	A	76225297	G	A	76225297	3	1	52	1	0	0	0	0	1	0	0	0	5753	1116	39	1	1129	1	FBXO22	15	76225297	Missense_Mutation	SNP	G	TCGA-OR-A5LJ-01A-11D-A29I-10	1303960	76225297	26306095	460	10776										
C15orf40	123207	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr15	83679055	83679055	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	ggtgacgcatcctttaggatCaactgccacaggacctaagg	11	11	1	1	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	C15orf40-91	NM_001160116	exon2	c.G172A	p.D58N	TAGGATCAACTGC	.	183	153	262	0	.	4	0	4	0	0	T	83679055	C	T	83679055	3	4	52	1	0	0	0	0	1	0	0	0	1798	826	29	3	773	3	C15orf40	15	83679055	Missense_Mutation	SNP	C	TCGA-OR-A5LJ-01A-11D-A29I-10	7453758	83679055	18852337	461	10777										
ALPK3	57538	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	85360157	85360157	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	gggtcagtcacggctggtgcCaggaagagggctggttcttt	17	8	3	1	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	ALPK3-337	NM_020778	exon1	c.C80T	p.P27L	TGGTGCCAGGAAG	.	220	21	212	0	.	0	0	0	0	0	T	85360157	C	T	85360157	3	4	52	1	0	0	0	0	1	0	0	0	546	594	21	3	82	3	ALPK3	15	85360157	Missense_Mutation	SNP	C	TCGA-OR-A5LJ-01A-11D-A29I-10	1681102	85360157	17171235	462	10778										
HDDC3	374659	bcgsc.ca	37	chr15	91475059	91475060	+	Frame_Shift_Del	DEL	AG	AG	-													0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	tctttctctccagcttgggcAgagtcttgtcatctgttacc					novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	AG	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	HDDC3-91	NM_198527	exon3	c.283_284del	p.95_95del	TTGGGCAGAGTCT	.	33	7	60	0	.	0	0	0	0	0	-	91475060	AG	-	91475059	7	5	52	1	0	1	0	1	0	0	0	0	7038	188	7	0	146	0	HDDC3	15	91475059	Frame_Shift_Del	DEL	AG	TCGA-OR-A5LJ-01A-11D-A29I-10	6114902	91475059	11056333	463	10779										
ARRDC4	91947	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	98513945	98513945	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	tgcctgtatacaagaattccGgtttcaacccccacctcttt	5	14	2	1	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	ARRDC4-90	NM_183376	exon7	c.G1172A	p.R391Q	AATTCCGGTTTCA	.	41	4	91	0	.	0	0	0	0	0	A	98513945	G	A	98513945	3	1	52	1	0	0	0	0	1	0	0	0	986	1116	39	1	1198	1	ARRDC4	15	98513945	Missense_Mutation	SNP	G	TCGA-OR-A5LJ-01A-11D-A29I-10	7038886	98513945	4017447	464	10780										
ADAMTS17	170691	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr15	100594247	100594247	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	tgttgatggaccccttacccGagtctttgagagctagaaag	11	9	1	3	rs143817747	byfrequency	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	ADAMTS17-228	NM_139057	exon16	c.C2150T	p.S717L	TTACCCGAGTCTT	.	57	43	65	0	G|0.999;A|0.001	0	0	0	0	0	A	100594247	G	A	100594247	3	1	52	1	0	0	0	0	1	0	0	0	262	1059	37	1	1165	1	ADAMTS17	15	100594247	Missense_Mutation	SNP	G	TCGA-OR-A5LJ-01A-11D-A29I-10	2080302	100594247	1937145	465	10781										
OR4F15	390649	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr15	102358851	102358851	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	tcctctatcattggccttatCcactcattggtccaattagt	5	12	3	0	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	OR4F15-68	NM_001001674	exon1	c.C462T	p.I154I	CCTTATCCACTCA	.	187	53	247	0	.	0	0	0	0	0	T	102358851	C	T	102358851	2	4	52	1	0	0	0	0	0	0	0	1	11090	845	30	3		3	OR4F15	15	102358851	Silent	SNP	C	TCGA-OR-A5LJ-01A-11D-A29I-10	1764604	102358851	172541	466	10782										
ITFG3	83986	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr16	314146	314146	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	ttcttcttctggggcctccaCgagctggggagcaccagcga	13	13	3	0	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	ITFG3-90	NM_032039	exon11	c.C1320T	p.H440H	CCTCCACGAGCTG	.	28	23	36	0	.	19	1	18	0	0	T	314146	C	T	314146	2	4	52	1	0	0	0	0	0	0	0	1	7892	535	19	1		1	ITFG3	16	314146	Silent	SNP	C	TCGA-OR-A5LJ-01A-11D-A29I-10		314146	90040607	467	10783										
JMJD8	339123	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	732820	732820	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	gaggaaggtggagatgaagaCgctggtgtcaaggttgagcg	19	4	1	4	rs113649865	byfrequency	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	JMJD8-67	NM_001005920	exon9	c.G832A	p.V278I	TGAAGACGCTGGT	.	144	122	238	2	C|0.999;T|0.001	60	2	58	0	0	T	732820	C	T	732820	3	4	52	1	0	0	0	0	1	0	0	0	7977	536	19	1	29	1	JMJD8	16	732820	Missense_Mutation	SNP	C	TCGA-OR-A5LJ-01A-11D-A29I-10	418674	732820	89621933	468	10784										
UBE2I	7329	bcgsc.ca	37	chr16	1364365	1364365	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	aactgggagtgcgccattccAggaaagaaaggggtaagggg	17	6	0	1	rs4610	bycluster;byfrequency;by1000genomes	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	UBE2I-290	NM_003345	exon3	c.A138G	p.P46P	CATTCCAGGAAAG	.	133	6	175	1	A|0.870;G|0.130	1	1	0	0	0	G	1364365	A	G	1364365	2	3	52	1	0	0	0	0	0	0	0	1	16897	175	7	4		4	UBE2I	16	1364365	Silent	SNP	A	TCGA-OR-A5LJ-01A-11D-A29I-10	631545	1364365	88990388	469	10785										
RNF151	146310	hgsc.bcm.edu	37	chr16	2018635	2018635	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	cccctgggctgcggggccacCctggacccggccgagcgtgc	16	18	0	0	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	RNF151-22	NM_174903	exon4	c.C447A	p.T149T	GGCCACCCTGGAC	.	25	23	4	0	.	0	0	0	0	0	A	2018635	C	A	2018635	2	1	52	1	0	0	0	0	0	0	0	1	13487	610	22	3		3	RNF151	16	2018635	Silent	SNP	C	TCGA-OR-A5LJ-01A-11D-A29I-10	654270	2018635	88336118	470	10786										
PKMYT1	9088	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr16	3024609	3024609	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	tgctgccagccctccccaccGtggggcagctccatgttgca	11	17	0	0	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	PKMYT1-765	NM_182687	exon5	c.C921T	p.H307H	CCCACCGTGGGGC	.	162	122	277	1	.	23	2	21	0	0	A	3024609	G	A	3024609	2	1	52	1	0	0	0	0	0	0	0	1	12007	1136	40	1		1	PKMYT1	16	3024609	Silent	SNP	G	TCGA-OR-A5LJ-01A-11D-A29I-10	1005974	3024609	87330144	471	10787										
ZNF263	10127	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr16	3340332	3340332	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	gtataaatgtaccctttgtgGggaaaacttctctcatagat	8	7	2	1	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	ZNF263-94	NM_005741	exon6	c.G1826T	p.G609V	TTTGTGGGGAAAA	.	60	13	95	0	.	7	4	3	0	0	T	3340332	G	T	3340332	3	4	52	1	0	0	0	0	1	0	0	0	17840	1232	43	3	1848	3	ZNF263	16	3340332	Missense_Mutation	SNP	G	TCGA-OR-A5LJ-01A-11D-A29I-10	315723	3340332	87014421	472	10788										
ERCC4	2072	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr16	14041727	14041727	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	tacaagcgtcccgtgcttctGattgagtttgaccctagcaa	9	11	1	3	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	ERCC4-665	NM_005236	exon11	c.G2274A	p.L758L	GCTTCTGATTGAG	.	79	8	76	0	.	0	0	0	0	0	A	14041727	G	A	14041727	2	1	52	1	0	0	0	0	0	0	0	1	5228	1277	45	3		3	ERCC4	16	14041727	Silent	SNP	G	TCGA-OR-A5LJ-01A-11D-A29I-10	10701395	14041727	76313026	473	10789										
ABCC1	4363	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr16	16184382	16184382	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	agctgctggctcgagacggcGccttcgctgagttcctgcgt	14	13	0	2	rs45517537		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	ABCC1-94	NM_004996	exon19	c.G2581A	p.A861T	GACGGCGCCTTCG	.	64	54	130	0	G|1.000;A|0.000	11	2	9	0	0	A	16184382	G	A	16184382	3	1	52	1	0	0	0	0	1	0	0	0	49	1087	38	1	2655	1	ABCC1	16	16184382	Missense_Mutation	SNP	G	TCGA-OR-A5LJ-01A-11D-A29I-10	2142655	16184382	74170371	474	10790										
COG7	91949	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	23415033	23415033	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	acgtccatcttcgaaataagCaacagctgttgtttgatgcg	9	9	1	1	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	COG7-90	NM_153603	exon13	c.G1785A	p.L595L	AATAAGCAACAGC	.	139	14	191	0	.	15	13	2	0	0	T	23415033	C	T	23415033	2	4	52	1	0	0	0	0	0	0	0	1	3669	709	25	3		3	COG7	16	23415033	Silent	SNP	C	TCGA-OR-A5LJ-01A-11D-A29I-10	7230651	23415033	66939720	475	10791										
TAOK2	9344	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr16	29997670	29997670	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	ccacgcgggagctggagctgCggcagctccaggccgtgcag	17	14	0	0	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	TAOK2-521	NM_004783	exon16	c.C2077T	p.R693W	GAGCTGCGGCAGC	.	88	6	30	0	.	44	42	2	0	0	T	29997670	C	T	29997670	3	4	52	1	0	0	0	0	1	0	0	0	15585	759	27	1	2135	1	TAOK2	16	29997670	Missense_Mutation	SNP	C	TCGA-OR-A5LJ-01A-11D-A29I-10	6582637	29997670	60357083	476	10792										
PRR14	78994	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr16	30664048	30664048	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	tctttctcttccaggtccccGtggtgccctcaaagcagacc	8	16	3	1	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	PRR14-90	NM_024031	exon4	c.G199A	p.V67M	GTCCCCGTGGTGC	.	175	47	242	0	.	0	0	0	0	0	A	30664048	G	A	30664048	3	1	52	1	0	0	0	0	1	0	0	0	12618	1145	40	1	209	1	PRR14	16	30664048	Missense_Mutation	SNP	G	TCGA-OR-A5LJ-01A-11D-A29I-10	666378	30664048	59690705	477	10793										
RNF40	9810	broad.mit.edu;bcgsc.ca	37	chr16	30780607	30780607	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	acagcagttgcgggaaaaggAtgatgccaactttaagctaa	11	7	0	1	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	RNF40-226	NM_014771	exon16	c.A2348G	p.D783G	AAAAGGATGATGC	.	216	8	334	0	.	28	27	1	0	0	G	30780607	A	G	30780607	3	3	52	1	0	0	0	0	1	0	0	0	13528	333	12	4	2406	4	RNF40	16	30780607	Missense_Mutation	SNP	A	TCGA-OR-A5LJ-01A-11D-A29I-10	116559	30780607	59574146	478	10794										
ZNF646	9726	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr16	31091261	31091261	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	ctgagcggcccttcagctgcGaggtgtgtggccgatcctac	14	13	1	1	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	ZNF646-153	NM_014699	exon2	c.G3616A	p.E1206K	AGCTGCGAGGTGT	.	152	26	218	1	.	6	5	1	0	0	A	31091261	G	A	31091261	3	1	52	1	0	0	0	0	1	0	0	0	18099	1059	37	1	3618	1	ZNF646	16	31091261	Missense_Mutation	SNP	G	TCGA-OR-A5LJ-01A-11D-A29I-10	310654	31091261	59263492	479	10795										
ARMC5	79798	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr16	31473937	31473937	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	gggctgtgtgcctcctatgtCgtgaggccatcaaccgggcc	14	13	1	1	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	ARMC5-24	NM_024742	exon3	c.C1069T	p.R357C	CTATGTCGTGAGG	.	39	34	67	0	.	7	0	7	0	0	T	31473937	C	T	31473937	3	4	52	1	0	0	0	0	1	0	0	0	955	884	31	1	1079	1	ARMC5	16	31473937	Missense_Mutation	SNP	C	TCGA-OR-A5LJ-01A-11D-A29I-10	382676	31473937	58880816	480	10796										
PHKB	5257	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr16	47697593	47697593	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	ttatccaatgtctaggtaccGtttctgatcacattgagaga	8	8	3	3	rs56010117	byfrequency	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	PHKB-154	NM_000293	exon24	c.G2284A	p.V762I	GGTACCGTTTCTG	.	50	33	68	0	G|0.999;A|0.001	0	0	0	0	0	A	47697593	G	A	47697593	3	1	52	1	0	0	0	0	1	0	0	0	11874	1145	40	1	2437	1	PHKB	16	47697593	Missense_Mutation	SNP	G	TCGA-OR-A5LJ-01A-11D-A29I-10	16223656	47697593	42657160	481	10797										
NKD1	85407	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr16	50667165	50667165	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	cctccaatcccactcgatctCgctcccatgagccggaagcc	7	19	1	1	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	NKD1-226	NM_033119	exon10	c.C886T	p.R296C	CGATCTCGCTCCC	.	221	181	312	1	.	30	0	30	0	0	T	50667165	C	T	50667165	3	4	52	1	0	0	0	0	1	0	0	0	10470	884	31	1	924	1	NKD1	16	50667165	Missense_Mutation	SNP	C	TCGA-OR-A5LJ-01A-11D-A29I-10	2969572	50667165	39687588	482	10798										
DOK4	55715	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr16	57507532	57507532	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	ggaagcgactcaccagcataGctggaggcttcggcgatgtt	14	10	1	0	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	DOK4-227	NM_018110	exon8	c.C855T	p.S285S	AGCATAGCTGGAG	.	156	35	224	0	.	3	3	0	0	0	A	57507532	G	A	57507532	2	1	52	1	0	0	0	0	0	0	0	1	4710	962	34	3		3	DOK4	16	57507532	Silent	SNP	G	TCGA-OR-A5LJ-01A-11D-A29I-10	6840367	57507532	32847221	483	10799										
CDH8	1006	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	61761065	61761065	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	cgaattcaggggcgttgtcaTtgacatccagcactttaata	9	9	2	1	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	CDH8-161	NM_001796	exon9	c.A1469G	p.N490S	TTGTCATTGACAT	.	131	105	161	1	.	0	0	0	0	0	C	61761065	T	C	61761065	3	2	52	1	0	0	0	0	1	0	0	0	3122	1493	52	4	946	4	CDH8	16	61761065	Missense_Mutation	SNP	T	TCGA-OR-A5LJ-01A-11D-A29I-10	4253533	61761065	28593688	484	10800										
LRRC36	55282	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr16	67380244	67380244	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	ggaagtgtcccgtctacaacCgttacccttcctcaaagaac	7	14	2	1	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	LRRC36-90	NM_018296	exon3	c.C284T	p.P95L	TACAACCGTTACC	.	72	59	110	0	.	0	0	0	0	0	T	67380244	C	T	67380244	3	4	52	1	0	0	0	0	1	0	0	0	9017	652	23	1	294	1	LRRC36	16	67380244	Missense_Mutation	SNP	C	TCGA-OR-A5LJ-01A-11D-A29I-10	5619179	67380244	22974509	485	10801										
C16orf86	388284	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr16	67701268	67701268	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	gaacccagagtgaagaccagCgcccagcaggcgcagcttcg	13	14	0	3	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	.	NM_001012984	exon2	c.C172T	p.R58C	GACCAGCGCCCAG	.	156	135	193	1	.	1	0	1	0	0	T	67701268	C	T	67701268	3	4	52	1	0	0	0	0	1	0	0	0	1843	768	27	1	178	1	C16orf86	16	67701268	Missense_Mutation	SNP	C	TCGA-OR-A5LJ-01A-11D-A29I-10	321024	67701268	22653485	486	10802										
TSNAXIP1	55815	broad.mit.edu	37	chr16	67859858	67859858	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	agctacgaggaggttcgcaaGgagcatgagatcctcatgca	13	9	1	1	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	TSNAXIP1-90	NM_018430	exon9	c.G861T	p.K287N	TCGCAAGGAGCAT	.	75	3	126	0	.	0	0	0	0	0	T	67859858	G	T	67859858	3	4	52	1	0	0	0	0	1	0	0	0	16670	991	35	3	887	3	TSNAXIP1	16	67859858	Missense_Mutation	SNP	G	TCGA-OR-A5LJ-01A-11D-A29I-10	158590	67859858	22494895	487	10803										
VPS4A	27183	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr16	69352767	69352767	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	ccaacatacggtggaacgacGtggccgggctggagggggcc	18	11	0	0	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	.	NM_013245	exon5	c.G385A	p.V129M	AACGACGTGGCCG	.	48	38	64	0	.	30	0	30	0	0	A	69352767	G	A	69352767	3	1	52	1	0	0	0	0	1	0	0	0	17250	1145	40	1	403	1	VPS4A	16	69352767	Missense_Mutation	SNP	G	TCGA-OR-A5LJ-01A-11D-A29I-10	1492909	69352767	21001986	488	10804										
MLYCD	23417	hgsc.bcm.edu	37	chr16	83933193	83933193	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	caccacatcagcaagctggaCggcggcgtgcgcttcctggt	13	14	1	0	rs62640904	byfrequency	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	MLYCD-90	NM_012213	exon1	c.C444T	p.D148D	GCTGGACGGCGGC	.	14	8	0	0	C|0.970;T|0.030	2	0	2	0	0	T	83933193	C	T	83933193	2	4	52	1	0	0	0	0	0	0	0	1	9666	535	19	1		1	MLYCD	16	83933193	Silent	SNP	C	TCGA-OR-A5LJ-01A-11D-A29I-10	14580426	83933193	6421560	489	10805										
MBTPS1	8720	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	84092913	84092913	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	aggcggacactaacctgggcGccgtctcgtttaaaggctgt	13	11	1	0	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	MBTPS1-92	NM_003791	exon21	c.C2825T	p.A942V	CTGGGCGCCGTCT	.	105	15	155	0	.	1	1	0	0	0	A	84092913	G	A	84092913	3	1	52	1	0	0	0	0	1	0	0	0	9389	1087	38	1	345	1	MBTPS1	16	84092913	Missense_Mutation	SNP	G	TCGA-OR-A5LJ-01A-11D-A29I-10	159720	84092913	6261840	490	10806										
IL17C	27189	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	88706470	88706470	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	ctgcacctgcgtgctgccccGttcagtgtgaccgccgaggc	13	16	1	1	rs189692693		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	IL17C-90	NM_013278	exon3	c.G584A	p.R195H	TGCCCCGTTCAGT	.	92	10	115	0	G|0.999;A|0.000	0	0	0	0	0	A	88706470	G	A	88706470	3	1	52	1	0	0	0	0	1	0	0	0	7657	1145	40	1	594	1	IL17C	16	88706470	Missense_Mutation	SNP	G	TCGA-OR-A5LJ-01A-11D-A29I-10	4613557	88706470	1648283	491	10807										
CDT1	81620	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr16	88873021	88873021	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	gctgccccagccacccgccaCggagaagctcaccactgctc	9	20	1	1	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	CDT1-227	NM_030928	exon7	c.C1061T	p.T354M	CCGCCACGGAGAA	.	218	59	99	0	.	18	12	6	0	0	T	88873021	C	T	88873021	3	4	52	1	0	0	0	0	1	0	0	0	3186	536	19	1	1087	1	CDT1	16	88873021	Missense_Mutation	SNP	C	TCGA-OR-A5LJ-01A-11D-A29I-10	166551	88873021	1481732	492	10808										
CPNE7	27132	broad.mit.edu;bcgsc.ca	37	chr16	89661966	89661966	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	tccccacggggtgagcccgcGctccgggacatcgtacagtt	13	15	0	1	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	CPNE7-90	NM_014427	exon16	c.G1719A	p.A573A	GCCCGCGCTCCGG	.	174	7	71	0	.	21	18	2	1	0	A	89661966	G	A	89661966	2	1	52	1	0	0	0	0	0	0	0	1	3823	1074	38	1		1	CPNE7	16	89661966	Silent	SNP	G	TCGA-OR-A5LJ-01A-11D-A29I-10	788945	89661966	692787	493	10809										
DEF8	54849	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	90021667	90021667	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	gtctgaggaccacttctcccGccctgtggtaaggttttaga	11	11	2	2	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	DEF8-68	NM_207514	exon4	c.G398A	p.R133H	TCTCCCGCCCTGT	.	120	13	189	0	.	0	0	0	0	0	A	90021667	G	A	90021667	3	1	52	1	0	0	0	0	1	0	0	0	4393	1087	38	1	408	1	DEF8	16	90021667	Missense_Mutation	SNP	G	TCGA-OR-A5LJ-01A-11D-A29I-10	359701	90021667	333086	494	10810										
ZZEF1	23140	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	3954155	3954155	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	gggtggtggcactgctgcgcGtctgggggtccagcttctcc	17	12	2	0	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	ZZEF1-93	NM_015113	exon36	c.C5783T	p.T1928M	CTGCGCGTCTGGG	.	94	72	110	0	.	4	0	4	0	0	A	3954155	G	A	3954155	3	1	52	1	0	0	0	0	1	0	0	0	18292	1145	40	1	3182	1	ZZEF1	17	3954155	Missense_Mutation	SNP	G	TCGA-OR-A5LJ-01A-11D-A29I-10		3954155	77241055	495	10811										
ANKFY1	51479	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	4071191	4071191	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	agcatttatggcaaagaagaCgtccgcagtgacgactgtgg	13	8	0	3	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	ANKFY1-93	NM_001257999	exon25	c.G3518A	p.R1173H	AGAAGACGTCCGC	.	49	5	70	0	.	8	7	1	0	0	T	4071191	C	T	4071191	3	4	52	1	0	0	0	0	1	0	0	0	626	536	19	1	121	1	ANKFY1	17	4071191	Missense_Mutation	SNP	C	TCGA-OR-A5LJ-01A-11D-A29I-10	117036	4071191	77124019	496	10812										
SPNS3	201305	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	4348462	4348462	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	tagctccttcatctccccccGggtacgtgtccatgcccctg	8	18	2	0	rs141797761	alternate_allele	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	SPNS3-153	NM_182538	exon3	c.G401C	p.R134P	CCCCCCGGGTACG	.	93	83	176	1	G|1.000;A|0.000	0	0	0	0	0	C	4348462	G	C	4348462	3	2	52	1	0	0	0	0	1	0	0	0	15113	1130	39	2	411	2	SPNS3	17	4348462	Missense_Mutation	SNP	G	TCGA-OR-A5LJ-01A-11D-A29I-10	277271	4348462	76846748	497	10813										
NLRP1	22861	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	5436698	5436698	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	cctgagcaacatgggaagccGccctctctacagaaaaaaga	9	12	1	3	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	NLRP1-274	NM_014922	exon10	c.C3059T	p.A1020V	GAAGCCGCCCTCT	.	28	25	33	0	.	0	0	0	0	0	A	5436698	G	A	5436698	3	1	52	1	0	0	0	0	1	0	0	0	10500	1087	38	1	1469	1	NLRP1	17	5436698	Missense_Mutation	SNP	G	TCGA-OR-A5LJ-01A-11D-A29I-10	1088236	5436698	75758512	498	10814										
KIAA0753	9851	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr17	6502594	6502594	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	ctttcgctgtgtttactgacGagccatctttcaaatgaata	7	9	2	2	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	KIAA0753-90	NM_014804	exon14	c.C2135T	p.S712L	ACTGACGAGCCAT	.	90	6	111	0	.	6	6	0	0	0	A	6502594	G	A	6502594	3	1	52	1	0	0	0	0	1	0	0	0	8212	1059	37	1	792	1	KIAA0753	17	6502594	Missense_Mutation	SNP	G	TCGA-OR-A5LJ-01A-11D-A29I-10	1065896	6502594	74692616	499	10815										
DVL2	1856	broad.mit.edu	37	chr17	7132483	7132483	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	catgtcccctggctcaatgcGcccgtcggccgccacagccc	10	20	1	0	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	DVL2-659	NM_004422	exon8	c.C928T	p.R310C	CAATGCGCCCGTC	.	88	4	141	0	.	7	7	0	0	0	A	7132483	G	A	7132483	3	1	52	1	0	0	0	0	1	0	0	0	4847	1087	38	1	1314	1	DVL2	17	7132483	Missense_Mutation	SNP	G	TCGA-OR-A5LJ-01A-11D-A29I-10	629889	7132483	74062727	500	10816										
NEURL4	84461	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr17	7224496	7224496	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	gccggtgtctgaactgggggAaggaggctgggtgccttctg	19	8	2	1	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	NEURL4-46	NM_032442	exon20	c.T3295C	p.S1099P	TGGGGGAAGGAGG	.	113	20	229	0	.	10	6	4	0	0	G	7224496	A	G	7224496	3	3	52	1	0	0	0	0	1	0	0	0	10376	246	9	4	1433	4	NEURL4	17	7224496	Missense_Mutation	SNP	A	TCGA-OR-A5LJ-01A-11D-A29I-10	92013	7224496	73970714	501	10817										
TP53	7157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	7578212	7578212	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	gggcaccaccacactatgtcGaaaagtgtttctgtcatcca	8	12	2	0	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	TP53-70225	NM_000546	exon6	c.C637T	p.R213X	TATGTCGAAAAGT	.	132	112	188	0	.	1	0	1	0	0	A	7578212	G	A	7578212	4	1	52	1	0	0	0	0	0	1	0	0	16419	1066	37	1	657	1	TP53	17	7578212	Nonsense_Mutation	SNP	G	TCGA-OR-A5LJ-01A-11D-A29I-10	353716	7578212	73616998	502	10818										
KDM6B	23135	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr17	7752034	7752034	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	tgctcaaatccttggcctccGtgctggagggacaaaagtac	11	11	1	0	rs148573983		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	KDM6B-205	NM_001080424	exon11	c.G2428A	p.V810M	GCCTCCGTGCTGG	.	61	48	105	0	G|1.000;A|0.000	3	0	3	0	0	A	7752034	G	A	7752034	3	1	52	1	0	0	0	0	1	0	0	0	8159	1145	40	1	2458	1	KDM6B	17	7752034	Missense_Mutation	SNP	G	TCGA-OR-A5LJ-01A-11D-A29I-10	173822	7752034	73443176	503	10819										
MPRIP	23164	hgsc.bcm.edu;bcgsc.ca	37	chr17	17046886	17046886	+	Frame_Shift_Del	DEL	C	C	-													0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	acaggacttcaccaatgaagCccccccagctcctctcccag					novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	MPRIP-90	NM_015134	exon9	c.1052delC	p.A351fs	ATGAAGCCCCCCC	.	78	68	97	1	.	0	0	0	0	0	-	17046886	C	-	17046886	7	5	52	1	0	1	0	1	0	0	0	0	9771	739	26	0	1086	0	MPRIP	17	17046886	Frame_Shift_Del	DEL	C	TCGA-OR-A5LJ-01A-11D-A29I-10	9294852	17046886	64148324	504	10820										
MYO15A	51168	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	18054476	18054476	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	tgtaggcaccggtccccctgCcaaacccgtgctcctgcgtg	11	17	0	0	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	MYO15A-97	NM_016239	exon38	c.C7526T	p.A2509V	CCCCTGCCAAACC	.	72	57	92	0	.	0	0	0	0	0	T	18054476	C	T	18054476	3	4	52	1	0	0	0	0	1	0	0	0	10091	739	26	3	7672	3	MYO15A	17	18054476	Missense_Mutation	SNP	C	TCGA-OR-A5LJ-01A-11D-A29I-10	1007590	18054476	63140734	505	10821										
FLII	2314	broad.mit.edu	37	chr17	18152474	18152474	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	aggtccccttgaggggcacaGgctccaacttgatgttcttt	11	11	1	2	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	FLII-91	NM_002018	exon16	c.C1901A	p.P634H	GGCACAGGCTCCA	.	67	3	122	0	.	37	37	0	0	0	T	18152474	G	T	18152474	3	4	52	1	0	0	0	0	1	0	0	0	5944	1000	35	3	1968	3	FLII	17	18152474	Missense_Mutation	SNP	G	TCGA-OR-A5LJ-01A-11D-A29I-10	97998	18152474	63042736	506	10822										
SLC13A2	9058	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	26800779	26800779	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	cctatcgctcctacctgatcGtgttcttcgtgcccattctc	6	16	2	1	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	SLC13A2-90	NM_001145975	exon1	c.G49A	p.V17M	CTGATCGTGTTCT	.	92	17	161	0	.	0	0	0	0	0	A	26800779	G	A	26800779	3	1	52	1	0	0	0	0	1	0	0	0	14427	1145	40	1	51	1	SLC13A2	17	26800779	Missense_Mutation	SNP	G	TCGA-OR-A5LJ-01A-11D-A29I-10	8648305	26800779	54394431	507	10823										
SPAG5	10615	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	26919548	26919548	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	acagaggaaggcaagaaggcGttactttcagaaggtactaa	12	6	1	3	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	SPAG5-90	NM_006461	exon3	c.C714T	p.N238N	GAAGGCGTTACTT	.	71	58	119	0	.	6	0	6	0	0	A	26919548	G	A	26919548	2	1	52	1	0	0	0	0	0	0	0	1	15018	1136	40	1		1	SPAG5	17	26919548	Silent	SNP	G	TCGA-OR-A5LJ-01A-11D-A29I-10	118769	26919548	54275662	508	10824										
EFCAB5	374786	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	28405430	28405430	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	gtctgaggaattctgccaggCggaaatggctgcaccaaatc	12	10	2	1	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	EFCAB5-70	NM_198529	exon15	c.C2935T	p.R979W	GCCAGGCGGAAAT	.	171	147	192	0	.	0	0	0	0	0	T	28405430	C	T	28405430	3	4	52	1	0	0	0	0	1	0	0	0	4949	759	27	1	3160	1	EFCAB5	17	28405430	Missense_Mutation	SNP	C	TCGA-OR-A5LJ-01A-11D-A29I-10	1485882	28405430	52789780	509	10825										
ATAD5	79915	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	29204542	29204542	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	agaacccagcagaaaaaatgCaacatctcttattctttttg	5	9	2	2	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	ATAD5-93	NM_024857	exon16	c.C3893T	p.A1298V	AAAATGCAACATC	.	89	71	170	2	.	0	0	0	0	0	T	29204542	C	T	29204542	3	4	52	1	0	0	0	0	1	0	0	0	1077	710	25	3	3955	3	ATAD5	17	29204542	Missense_Mutation	SNP	C	TCGA-OR-A5LJ-01A-11D-A29I-10	799112	29204542	51990668	510	10826										
RFFL	117584	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	33338994	33338994	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	ccgatgcaagctctcaggacCggaagacatgcacagctcgg	12	13	1	1	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	RFFL-90	NM_001017368	exon7	c.G1085A	p.R362Q	CAGGACCGGAAGA	.	129	25	152	1	.	4	2	2	0	0	T	33338994	C	T	33338994	3	4	52	1	0	0	0	0	1	0	0	0	13285	652	23	1	10	1	RFFL	17	33338994	Missense_Mutation	SNP	C	TCGA-OR-A5LJ-01A-11D-A29I-10	4134452	33338994	47856216	511	10827										
ACACA	31	bcgsc.ca	37	chr17	35581989	35581989	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	tagactctacttggttatggCgaagctcatatgatggcaaa	10	7	2	2	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	ACACA-154	NM_198834	exon27	c.G3398A	p.R1133H	TTATGGCGAAGCT	.	218	6	283	2	.	0	0	0	0	0	T	35581989	C	T	35581989	3	4	52	1	0	0	0	0	1	0	0	0	106	768	27	1	3873	1	ACACA	17	35581989	Missense_Mutation	SNP	C	TCGA-OR-A5LJ-01A-11D-A29I-10	2242995	35581989	45613221	512	10828										
GSDMA	284110	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	38130530	38130530	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	attattgtccccataggggaCgtacacgaaggcttcaggac	11	10	1	0	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	GSDMA-90	NM_178171	exon9	c.C756T	p.D252D	AGGGGACGTACAC	.	76	61	114	0	.	0	0	0	0	0	T	38130530	C	T	38130530	2	4	52	1	0	0	0	0	0	0	0	1	6837	535	19	1		1	GSDMA	17	38130530	Silent	SNP	C	TCGA-OR-A5LJ-01A-11D-A29I-10	2548541	38130530	43064680	513	10829										
TNS4	84951	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	38633890	38633890	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	agtcaccaggccgatgacctGcgaggctggctggaccatgt	14	12	1	1	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	TNS4-155	NM_032865	exon13	c.C2098A	p.Q700K	TGACCTGCGAGGC	.	95	79	156	0	.	0	0	0	0	0	T	38633890	G	T	38633890	3	4	52	1	0	0	0	0	1	0	0	0	16382	1328	46	3	53	3	TNS4	17	38633890	Missense_Mutation	SNP	G	TCGA-OR-A5LJ-01A-11D-A29I-10	503360	38633890	42561320	514	10830										
KRT33B	3884	broad.mit.edu	37	chr17	39521763	39521763	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	gggagcagcgtccacctccaCgttgaggcggtctccaagct	13	14	1	1	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	KRT33B-90	NM_002279	exon4	c.G631A	p.V211M	CCTCCACGTTGAG	.	124	5	224	0	.	0	0	0	0	0	T	39521763	C	T	39521763	3	4	52	1	0	0	0	0	1	0	0	0	8491	536	19	1	599	1	KRT33B	17	39521763	Missense_Mutation	SNP	C	TCGA-OR-A5LJ-01A-11D-A29I-10	887873	39521763	41673447	515	10831										
MLX	6945	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr17	40720854	40720856	+	Frame_Shift_Del	DEL	GAT	GAT	-													0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	tgcccccatctctgagcgtaGatgatgaggacagtgattac					novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	GAT	GAT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	MLX-90	NM_170607	exon4	c.332_333del	p.111_111del	AGCGTAGATGATG	.	165	131	304	0	.	0	0	0	0	0	-	40720856	GAT	-	40720854	7	5	52	1	0	1	0	1	0	0	0	0	9663	956	33	0	345	0	MLX	17	40720854	Frame_Shift_Del	DEL	GAT	TCGA-OR-A5LJ-01A-11D-A29I-10	1199091	40720854	40474356	516	10832										
WNT3	7473	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	44846089	44846089	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	cacggaagtcaggctgcgccCaccagcaggtcttcacctca	10	16	4	0	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	WNT3-522	NM_030753	exon4	c.A665A	p.Q222Q	TGCGCCCACCAGC	.	137	99	201	1	.	11	0	11	0	0	T	44846089	C	T	44846089	2	4	52	1	0	0	0	0	0	0	0	1	17426	595	21	3		3	WNT3	17	44846089	Silent	SNP	C	TCGA-OR-A5LJ-01A-11D-A29I-10	4125235	44846089	36349121	517	10833										
BZRAP1	9256	broad.mit.edu	37	chr17	56388998	56388998	+	Silent	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	ttggatgtgccagcagcatcGatggtgactgggagccaact	14	9	0	1	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	BZRAP1-229	NM_004758	exon18	c.C3015A	p.I1005I	AGCATCGATGGTG	.	154	5	194	0	.	2	1	1	0	0	T	56388998	G	T	56388998	2	4	52	1	0	0	0	0	0	0	0	1	1580	1048	37	2		2	BZRAP1	17	56388998	Silent	SNP	G	TCGA-OR-A5LJ-01A-11D-A29I-10	11542909	56388998	24806212	518	10834										
CLTC	1213	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	57754463	57754463	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	atccctactatgacagtcgcGttgttggaaagtattgtgag	11	7	0	2	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	CLTC-835	NM_004859	exon17	c.G2710A	p.V904I	AGTCGCGTTGTTG	.	110	89	142	1	.	19	1	18	0	0	A	57754463	G	A	57754463	3	1	52	1	0	0	0	0	1	0	0	0	3572	1145	40	1	2776	1	CLTC	17	57754463	Missense_Mutation	SNP	G	TCGA-OR-A5LJ-01A-11D-A29I-10	1365465	57754463	23440747	519	10835										
KCNH6	81033	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr17	61621675	61621675	+	Frame_Shift_Del	DEL	C	C	-													0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	ctgagctactgcaggaaatgCccccaaggcacagcccccaa					novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	KCNH6-91	NM_030779	exon12	c.2407delC	p.P803fs	GAAATGCCCCCAA	.	65	49	120	0	.	0	0	0	0	0	-	61621675	C	-	61621675	7	5	52	1	0	1	0	1	0	0	0	0	8057	739	26	0	2453	0	KCNH6	17	61621675	Frame_Shift_Del	DEL	C	TCGA-OR-A5LJ-01A-11D-A29I-10	3867212	61621675	19573535	520	10836										
DDX42	11325	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr17	61895428	61895428	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	gagactggcaatcggcatagCgatagtccacgtcacggaga	13	10	1	2	rs145932119		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	DDX42-230	NM_203499	exon18	c.C2487T	p.S829S	GCATAGCGATAGT	.	80	9	85	0	C|1.000;T|0.000	44	43	1	0	0	T	61895428	C	T	61895428	2	4	52	1	0	0	0	0	0	0	0	1	4368	767	27	1		1	DDX42	17	61895428	Silent	SNP	C	TCGA-OR-A5LJ-01A-11D-A29I-10	273753	61895428	19299782	521	10837										
TEX2	55852	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	62271012	62271012	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	aaaccattcctctttttctcGgccagttctcccaaagagat	5	13	3	1	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	TEX2-91	NM_018469	exon4	c.C2083T	p.R695X	TTTCTCGGCCAGT	.	115	96	168	1	.	0	0	0	0	0	A	62271012	G	A	62271012	4	1	52	1	0	0	0	0	0	1	0	0	15818	1124	39	1	1357	1	TEX2	17	62271012	Nonsense_Mutation	SNP	G	TCGA-OR-A5LJ-01A-11D-A29I-10	375584	62271012	18924198	522	10838										
ARSG	22901	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	66391298	66391298	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	tttgatggtgtggacgtctcCgaggtgctctttggccggtc	15	9	2	1	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	ARSG-91	NM_001267727	exon10	c.C1176T	p.S392S	CGTCTCCGAGGTG	.	104	83	168	0	.	2	1	1	0	0	T	66391298	C	T	66391298	2	4	52	1	0	0	0	0	0	0	0	1	993	639	23	1		1	ARSG	17	66391298	Silent	SNP	C	TCGA-OR-A5LJ-01A-11D-A29I-10	4120286	66391298	14803912	523	10839										
ABCA9	10350	bcgsc.ca	37	chr17	67028260	67028260	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	attggttacctgatggcttcTttcccacagaattctggaga	9	9	2	3	rs2302291	byfrequency	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	ABCA9-95	NM_080283	exon10	c.A1434G	p.K478K	GGCTTCTTTCCCA	.	84	6	123	1	T|0.542;C|0.458	0	0	0	0	0	C	67028260	T	C	67028260	2	2	52	1	0	0	0	0	0	0	0	1	39	1606	56	4		4	ABCA9	17	67028260	Silent	SNP	T	TCGA-OR-A5LJ-01A-11D-A29I-10	636962	67028260	14166950	524	10840										
ABCA6	23460	hgsc.bcm.edu;bcgsc.ca	37	chr17	67125767	67125767	+	Frame_Shift_Del	DEL	A	A	-													0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	ttaccaaagataagccatatAaaaaaaagagtataaatatg					novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	ABCA6-159	NM_080284	exon7	c.917delT	p.L306fs	CCATATAAAAAAA	.	180	144	202	1	.	0	0	0	0	0	-	67125767	A	-	67125767	7	5	52	1	0	1	0	1	0	0	0	0	36	372	13	0	4068	0	ABCA6	17	67125767	Frame_Shift_Del	DEL	A	TCGA-OR-A5LJ-01A-11D-A29I-10	97507	67125767	14069443	525	10841										
GRIN2C	2905	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr17	72838754	72838754	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	gccccggagagccaggagccGtggctggcacagggtggaag	19	11	0	1	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	GRIN2C-228	NM_000835	exon13	c.C3522T	p.H1174H	GGAGCCGTGGCTG	.	90	22	82	0	.	11	7	4	0	0	A	72838754	G	A	72838754	2	1	52	1	0	0	0	0	0	0	0	1	6802	1136	40	1		1	GRIN2C	17	72838754	Silent	SNP	G	TCGA-OR-A5LJ-01A-11D-A29I-10	5712987	72838754	8356456	526	10842										
TRIM65	201292	broad.mit.edu	37	chr17	73888574	73888574	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	cccaggaggccaagatgcagGccgagttctgggcgggaaca	16	11	1	1	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	TRIM65-90	NM_001256124	exon3	c.C518A	p.A173D	ATGCAGGCCGAGT	.	55	5	133	0	.	3	3	0	0	0	T	73888574	G	T	73888574	3	4	52	1	0	0	0	0	1	0	0	0	16577	1203	42	3	1051	3	TRIM65	17	73888574	Missense_Mutation	SNP	G	TCGA-OR-A5LJ-01A-11D-A29I-10	1049820	73888574	7306636	527	10843										
DNAH17	8632	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	76424720	76424720	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	gtcagaaagccaatctctgcGttggggtgcaggccatacag	13	10	2	1	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	DNAH17-142	NM_173628	exon77	c.C12474T	p.N4158N	CTCTGCGTTGGGG	.	122	34	226	0	.	1	1	0	0	0	A	76424720	G	A	76424720	2	1	52	1	0	0	0	0	0	0	0	1	4612	1136	40	1		1	DNAH17	17	76424720	Silent	SNP	G	TCGA-OR-A5LJ-01A-11D-A29I-10	2536146	76424720	4770490	528	10844										
SGSH	6448	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	78188920	78188920	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	tgcacgtcctggtgcagcccGtacatcccattctgatgctg	10	14	1	1	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	SGSH-91	NM_000199	exon3	c.C267T	p.Y89Y	CAGCCCGTACATC	.	52	48	58	0	.	9	1	8	0	0	A	78188920	G	A	78188920	2	1	52	1	0	0	0	0	0	0	0	1	14256	1140	40	1		1	SGSH	17	78188920	Silent	SNP	G	TCGA-OR-A5LJ-01A-11D-A29I-10	1764200	78188920	3006290	529	10845										
BAHCC1	57597	bcgsc.ca	37	chr17	79424537	79424537	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	ccggggccagtgtggccgtgCtggggccctcaccctcctct	14	17	2	0	rs34224936	byfrequency	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	BAHCC1-23	.	.	.	.	GCCGTGCTGGGGC	.	61	5	122	1	C|0.696;T|0.304	0	0	0	0	0	T	79424537	C	T	79424537	2	4	52	1	0	0	0	0	0	0	0	1	1297	796	28	3		3	BAHCC1	17	79424537	Silent	SNP	C	TCGA-OR-A5LJ-01A-11D-A29I-10	1235617	79424537	1770673	530	10846										
BAHCC1	57597	broad.mit.edu;bcgsc.ca	37	chr17	79424588	79424590	+	In_Frame_Del	DEL	AAG	AAG	-													0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	tggaggccaaccagaaggccAagaagaagaaggagaggcag					novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	BAHCC1-23	.	.	.	.	AAGGCCAAGAAGA	.	55	8	101	0	.	0	0	0	0	0	-	79424590	AAG	-	79424588	7	5	52	1	0	1	0	1	0	0	0	0	1297	131	5	0	4908	0	BAHCC1	17	79424588	In_Frame_Del	DEL	AAG	TCGA-OR-A5LJ-01A-11D-A29I-10	51	79424588	1770622	531	10847										
LAMA1	284217	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr18	6997824	6997824	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	agtgaggttcagagaaagaaCggcatcaccaatctcatcca	9	10	3	3	rs150510890		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	LAMA1-149	NM_005559	exon33	c.G4723A	p.V1575I	AAAGAACGGCATC	.	110	34	117	0	C|1.000;T|0.000	0	0	0	0	0	T	6997824	C	T	6997824	3	4	52	1	0	0	0	0	1	0	0	0	8627	536	19	1	4628	1	LAMA1	18	6997824	Missense_Mutation	SNP	C	TCGA-OR-A5LJ-01A-11D-A29I-10		6997824	71079424	532	10848										
CDH2	1000	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr18	25582999	25582999	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	tgccactgtgatgatgtcacCagtctcattgttgattgtaa	9	8	2	3	rs202045628	alternate_allele	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	CDH2-525	NM_001792	exon7	c.G982T	p.G328C	TGTCACCAGTCTC	.	173	145	271	1	.	5	0	5	0	0	A	25582999	C	A	25582999	3	1	52	1	0	0	0	0	1	0	0	0	3111	594	21	3	1778	3	CDH2	18	25582999	Missense_Mutation	SNP	C	TCGA-OR-A5LJ-01A-11D-A29I-10	18585175	25582999	52494249	533	10849										
ASXL3	80816	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr18	31250678	31250678	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	agaagaaatggagtctcaatGatggtaaacaagactgttcc	10	6	1	4	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	ASXL3-49	NM_030632	exon6	c.G519A	p.M173I	CTCAATGATGGTA	.	87	74	141	1	.	0	0	0	0	0	A	31250678	G	A	31250678	3	1	52	1	0	0	0	0	1	0	0	0	1069	1290	45	3	541	3	ASXL3	18	31250678	Missense_Mutation	SNP	G	TCGA-OR-A5LJ-01A-11D-A29I-10	5667679	31250678	46826570	534	10850										
ASXL3	80816	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr18	31324011	31324011	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	agccctcagctgcagtgattCtgtagcggtcacagactctc	10	13	4	2	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	ASXL3-49	NM_030632	exon12	c.C4199G	p.S1400C	GTGATTCTGTAGC	.	137	8	150	0	.	0	0	0	0	0	G	31324011	C	G	31324011	3	3	52	1	0	0	0	0	1	0	0	0	1069	913	32	3	4245	3	ASXL3	18	31324011	Missense_Mutation	SNP	C	TCGA-OR-A5LJ-01A-11D-A29I-10	73333	31324011	46753237	535	10851										
SLC14A1	6563	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr18	43319234	43319234	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	actctcctccccactcatgtGcctgcatgctgccataggat	7	16	2	0	rs201451018	alternate_allele	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	SLC14A1-515	NM_001146037	exon6	c.G938A	p.C313Y	TCATGTGCCTGCA	.	88	8	145	0	G|0.999;T|0.001	0	0	0	0	0	A	43319234	G	A	43319234	3	1	52	1	0	0	0	0	1	0	0	0	14431	1319	46	3	960	3	SLC14A1	18	43319234	Missense_Mutation	SNP	G	TCGA-OR-A5LJ-01A-11D-A29I-10	11995223	43319234	34758014	536	10852										
CXXC1	30827	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr18	47809921	47809921	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	ggtacatggacccaaaggacGtctggctctcatactggagg	13	10	2	0	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	CXXC1-131	NM_001101654	exon12	c.C1550T	p.T517M	AAGGACGTCTGGC	.	144	109	267	1	.	20	2	18	0	0	A	47809921	G	A	47809921	3	1	52	1	0	0	0	0	1	0	0	0	4103	1145	40	1	448	1	CXXC1	18	47809921	Missense_Mutation	SNP	G	TCGA-OR-A5LJ-01A-11D-A29I-10	4490687	47809921	30267327	537	10853										
NEDD4L	23327	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr18	56063446	56063446	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	tgaaacctttgaagatttacGagagaaacttctcatggccg	9	8	1	4	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	NEDD4L-658	NM_001144967	exon31	c.G2873A	p.R958Q	ATTTACGAGAGAA	.	45	32	74	1	.	12	1	11	0	0	A	56063446	G	A	56063446	3	1	52	1	0	0	0	0	1	0	0	0	10340	1058	37	1	3023	1	NEDD4L	18	56063446	Missense_Mutation	SNP	G	TCGA-OR-A5LJ-01A-11D-A29I-10	8253525	56063446	22013802	538	10854										
TNFRSF11A	8792	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr18	60017106	60017106	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	gtatgtctgccctgtggcccGgatgaatacttggatagctg	13	9	1	1	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	TNFRSF11A-659	NM_001270951	exon3	c.G219A	p.P73P	TGGCCCGGATGAA	.	68	59	105	0	.	0	0	0	0	0	A	60017106	G	A	60017106	2	1	52	1	0	0	0	0	0	0	0	1	16321	1103	39	1		1	TNFRSF11A	18	60017106	Silent	SNP	G	TCGA-OR-A5LJ-01A-11D-A29I-10	3953660	60017106	18060142	539	10855										
SERPINB2	5055	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr18	61564454	61564454	+	Splice_Site	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	agtctgcgagcttccgggaaGtaagtgaaacctgtaattga	12	7	1	2	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	SERPINB2-226	NM_002575	exon4	c.417+1G>A	.	CGGGAAGTAAGTG	.	35	24	43	0	.	0	0	0	0	0	A	61564454	G	A	61564454	5	1	52	1	0	0	0	0	0	0	1	0	14136	1043	36	3	428	3	SERPINB2	18	61564454	Splice_Site	SNP	G	TCGA-OR-A5LJ-01A-11D-A29I-10	1547348	61564454	16512794	540	10856										
ZNF407	55628	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr18	72347651	72347651	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	ggccttcctggcacacattcGcactcacacaggtatgtagc	9	14	1	0	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	ZNF407-92	NM_001146190	exon1	c.G4676A	p.R1559H	ACATTCGCACTCA	.	201	171	110	0	.	0	0	0	0	0	A	72347651	G	A	72347651	3	1	52	1	0	0	0	0	1	0	0	0	17924	1087	38	1	4678	1	ZNF407	18	72347651	Missense_Mutation	SNP	G	TCGA-OR-A5LJ-01A-11D-A29I-10	10783197	72347651	5729597	541	10857										
ARID3A	1820	hgsc.bcm.edu	37	chr19	929753	929753	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	gctgcgggcctgggacacccAgccagccccggcggctctga	15	17	1	1	rs1799595		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	ARID3A-90	NM_005224	exon2	c.A225G	p.P75P	ACACCCAGCCAGC	.	8	7	0	0	A|0.114;G|0.886	1	0	1	0	0	G	929753	A	G	929753	2	3	52	1	0	0	0	0	0	0	0	1	916	175	7	4		4	ARID3A	19	929753	Silent	SNP	A	TCGA-OR-A5LJ-01A-11D-A29I-10		929753	58199230	542	10858										
ATP8B3	148229	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	1796766	1796766	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	tgtggcagatggccagcaggCgccagaactcccgcacggcc	14	15	0	2	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	.	NM_138813	exon16	c.G1697A	p.R566H	AGCAGGCGCCAGA	.	114	101	46	0	.	0	0	0	0	0	T	1796766	C	T	1796766	3	4	52	1	0	0	0	0	1	0	0	0	1197	768	27	1	2291	1	ATP8B3	19	1796766	Missense_Mutation	SNP	C	TCGA-OR-A5LJ-01A-11D-A29I-10	867013	1796766	57332217	543	10859										
NCLN	56926	broad.mit.edu	37	chr19	3198895	3198895	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	gacgcctttggagtggccccCgtacgtatgtgtgtccccat	12	13	0	0	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	NCLN-90	NM_020170	exon5	c.C696T	p.P232P	GGCCCCCGTACGT	.	92	4	120	0	.	1	1	0	0	0	T	3198895	C	T	3198895	2	4	52	1	0	0	0	0	0	0	0	1	10256	666	23	1		1	NCLN	19	3198895	Silent	SNP	C	TCGA-OR-A5LJ-01A-11D-A29I-10	1402129	3198895	55930088	544	10860										
TBXA2R	6915	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr19	3595765	3595765	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	tgctgaggcgaggctggagaCgccggagcacggcgcggcgg	21	11	0	2	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	TBXA2R-90	NM_201636	exon3	c.G953A	p.R318H	TGGAGACGCCGGA	.	182	66	76	0	.	8	6	2	0	0	T	3595765	C	T	3595765	3	4	52	1	0	0	0	0	1	0	0	0	15700	536	19	1	327	1	TBXA2R	19	3595765	Missense_Mutation	SNP	C	TCGA-OR-A5LJ-01A-11D-A29I-10	396870	3595765	55533218	545	10861										
PLIN3	10226	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	4839518	4839518	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	cagttgctgggcaatgtcccGgaacatggtgagcgcccggg	16	11	0	1	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	PLIN3-90	NM_005817	exon8	c.C991T	p.R331W	TGTCCCGGAACAT	.	89	69	132	1	.	84	3	81	0	0	A	4839518	G	A	4839518	3	1	52	1	0	0	0	0	1	0	0	0	12120	1115	39	1	317	1	PLIN3	19	4839518	Missense_Mutation	SNP	G	TCGA-OR-A5LJ-01A-11D-A29I-10	1243753	4839518	54289465	546	10862										
PTPRS	5802	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	5244045	5244045	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	gtcagcaggctgtcgtccacGttgtgcttctgccagttgcc	12	13	2	0	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	PTPRS-357	NM_002850	exon11	c.C1437T	p.N479N	GTCCACGTTGTGC	.	61	47	46	0	.	1	0	1	0	0	A	5244045	G	A	5244045	2	1	52	1	0	0	0	0	0	0	0	1	12846	1136	40	1		1	PTPRS	19	5244045	Silent	SNP	G	TCGA-OR-A5LJ-01A-11D-A29I-10	404527	5244045	53884938	547	10863										
ARHGEF18	23370	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr19	7529570	7529576	+	Frame_Shift_Del	DEL	GCAGGTG	GCAGGTG	-													0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	gggagctctgaggaatcgccGcaggtggtacgtggatatcc					novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	GCAGGTG	GCAGGTG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	ARHGEF18-228	NM_001130955	exon13	c.2334_2340del	p.778_780del	ATCGCCGCAGGTG	.	194	29	142	0	.	0	0	0	0	0	-	7529576	GCAGGTG	-	7529570	7	5	52	1	0	1	0	1	0	0	0	0	901	1074	38	0	2384	0	ARHGEF18	19	7529570	Frame_Shift_Del	DEL	GCAGGTG	TCGA-OR-A5LJ-01A-11D-A29I-10	2285525	7529570	51599413	548	10864										
FBN3	84467	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	8203066	8203066	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	ccaggctggggatcccacgcGcatcagagccatgggggttg	16	12	1	1	rs141919495		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	FBN3-100	NM_032447	exon9	c.C1160T	p.A387V	CCACGCGCATCAG	.	162	93	90	1	G|1.000;A|0.000	0	0	0	0	0	A	8203066	G	A	8203066	3	1	52	1	0	0	0	0	1	0	0	0	5723	1087	38	1	7489	1	FBN3	19	8203066	Missense_Mutation	SNP	G	TCGA-OR-A5LJ-01A-11D-A29I-10	673496	8203066	50925917	549	10865										
KANK3	256949	hgsc.bcm.edu	37	chr19	8399709	8399709	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	gtcacccacgcgtccgcctcCacggtctcgggggcagcctc	12	19	2	0	rs890852		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	KANK3-90	NM_198471	exon3	c.G1002T	p.V334V	CGCCTCCACGGTC	.	5	4	0	0	T|0.129;G|0.871	1	0	1	0	0	A	8399709	C	A	8399709	2	1	52	1	0	0	0	0	0	0	0	1	7999	581	21	3		3	KANK3	19	8399709	Silent	SNP	C	TCGA-OR-A5LJ-01A-11D-A29I-10	196643	8399709	50729274	550	10866										
RAB11B	9230	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	8464942	8464942	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	ctaccgcgccatcacctccgCgtgcgtgtcggcagcctggg	13	17	1	0	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	RAB11B-227	NM_004218	exon2	c.C236T	p.A79V	CCTCCGCGTGCGT	.	574	210	92	0	.	0	0	0	0	0	T	8464942	C	T	8464942	3	4	52	1	0	0	0	0	1	0	0	0	12927	782	27	1	242	1	RAB11B	19	8464942	Missense_Mutation	SNP	C	TCGA-OR-A5LJ-01A-11D-A29I-10	65233	8464942	50664041	551	10867										
PIN1	5300	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	9959811	9959811	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	cgcctcgtttgcgctgcggaCgggggagatgagcgggcccg	19	12	0	2	rs112773610		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	PIN1-227	NM_006221	exon4	c.C428T	p.T143M	TGCGGACGGGGGA	.	128	76	54	0	C|0.500;T|0.500	165	61	104	0	0	T	9959811	C	T	9959811	3	4	52	1	0	0	0	0	1	0	0	0	11959	536	19	1	442	1	PIN1	19	9959811	Missense_Mutation	SNP	C	TCGA-OR-A5LJ-01A-11D-A29I-10	1494869	9959811	49169172	552	10868										
TYK2	7297	hgsc.bcm.edu;bcgsc.ca	37	chr19	10479028	10479028	+	Frame_Shift_Del	DEL	G	G	-													0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	ggatctctaggatgtggtttGggggcaaccagacttgggcc					novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	TYK2-1009	NM_003331	exon4	c.260delC	p.P87fs	TGGTTTGGGGGCA	.	509	156	285	2	.	0	0	0	0	0	-	10479028	G	-	10479028	7	5	52	1	0	1	0	1	0	0	0	0	16848	1348	47	0	3391	0	TYK2	19	10479028	Frame_Shift_Del	DEL	G	TCGA-OR-A5LJ-01A-11D-A29I-10	519217	10479028	48649955	553	10869										
ILF3	3609	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr19	10798173	10798173	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	gctgggaagaagcagccgcaCgggggccagcagaagccctc	16	13	0	2	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	ILF3-93	NM_017620	exon18	c.C2223T	p.H741H	GCCGCACGGGGGC	.	279	166	166	0	.	134	53	80	0	1	T	10798173	C	T	10798173	2	4	52	1	0	0	0	0	0	0	0	1	7733	535	19	1		1	ILF3	19	10798173	Silent	SNP	C	TCGA-OR-A5LJ-01A-11D-A29I-10	319145	10798173	48330810	554	10870										
LDLR	3949	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr19	11218155	11218155	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	ctgcaacatggctagagactGccgggactggtcagatgaac	13	10	1	3	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	LDLR-94	NM_001195798	exon6	c.G905T	p.C302F	GAGACTGCCGGGA	.	351	22	253	0	.	78	75	3	0	0	T	11218155	G	T	11218155	3	4	52	1	0	0	0	0	1	0	0	0	8726	1319	46	3	927	3	LDLR	19	11218155	Missense_Mutation	SNP	G	TCGA-OR-A5LJ-01A-11D-A29I-10	419982	11218155	47910828	555	10871										
ZNF563	147837	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr19	12429665	12429665	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	acatatcttgcatttatgagGtccacctccagtgtgcatta	7	10	1	1	rs201356487	alternate_allele	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	ZNF563-90	NM_145276	exon4	c.C1174T	p.P392S	TATGAGGTCCACC	.	287	15	148	0	G|1.000;T|0.000	13	11	2	0	0	A	12429665	G	A	12429665	3	1	52	1	0	0	0	0	1	0	0	0	18031	1261	44	3	260	3	ZNF563	19	12429665	Missense_Mutation	SNP	G	TCGA-OR-A5LJ-01A-11D-A29I-10	1211510	12429665	46699318	556	10872										
ASNA1	439	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	12858083	12858083	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	agctggaggagacgctgcccGtcatccgctcagtcagcgaa	13	13	3	1	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	ASNA1-92	NM_004317	exon5	c.G682A	p.V228I	CTGCCCGTCATCC	.	201	53	119	0	.	252	180	72	0	0	A	12858083	G	A	12858083	3	1	52	1	0	0	0	0	1	0	0	0	1048	1145	40	1	700	1	ASNA1	19	12858083	Missense_Mutation	SNP	G	TCGA-OR-A5LJ-01A-11D-A29I-10	428418	12858083	46270900	557	10873										
HOOK2	29911	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr19	12881872	12881872	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	agcgcaggcgctcatcctccCtgccactctccagcctgggg	11	18	2	0	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	HOOK2-92	NM_001100176	exon10	c.G776T	p.R259M	TCCTCCCTGCCAC	.	215	21	118	0	.	10	6	4	0	0	A	12881872	C	A	12881872	3	1	52	1	0	0	0	0	1	0	0	0	7304	681	24	3	1439	3	HOOK2	19	12881872	Missense_Mutation	SNP	C	TCGA-OR-A5LJ-01A-11D-A29I-10	23789	12881872	46247111	558	10874										
MAST1	22983	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	12980051	12980051	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	gaagtatggcttcacactgcGtgccatccgtgtctacatgg	11	11	2	0	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	MAST1-523	NM_014975	exon22	c.G2945A	p.R982H	CACTGCGTGCCAT	.	283	99	162	1	.	0	0	0	0	0	A	12980051	G	A	12980051	3	1	52	1	0	0	0	0	1	0	0	0	9352	1145	40	1	3031	1	MAST1	19	12980051	Missense_Mutation	SNP	G	TCGA-OR-A5LJ-01A-11D-A29I-10	98179	12980051	46148932	559	10875										
KLF1	10661	broad.mit.edu	37	chr19	12995769	12995769	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	cacgtgggcagagctggcagCggaaggggcgctgccccgtg	19	12	0	1	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	KLF1-90	NM_006563	exon3	c.G1019A	p.R340H	TGGCAGCGGAAGG	.	265	5	119	0	.	0	0	0	0	0	T	12995769	C	T	12995769	3	4	52	1	0	0	0	0	1	0	0	0	8358	768	27	1	73	1	KLF1	19	12995769	Missense_Mutation	SNP	C	TCGA-OR-A5LJ-01A-11D-A29I-10	15718	12995769	46133214	560	10876										
FARSA	2193	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	13035057	13035057	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	cggaagacccccgagtttccGacctccacccacttcttcag	7	18	2	1	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	FARSA-91	NM_004461	exon12	c.C1296T	p.V432V	GTTTCCGACCTCC	.	188	65	105	1	.	161	110	51	0	0	A	13035057	G	A	13035057	2	1	52	1	0	0	0	0	0	0	0	1	5698	1045	37	1		1	FARSA	19	13035057	Silent	SNP	G	TCGA-OR-A5LJ-01A-11D-A29I-10	39288	13035057	46093926	561	10877										
CCDC105	126402	hgsc.bcm.edu	37	chr19	15133926	15133926	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	gcagcaagagcagcgcggacCcctagtgaccccagcgtccc	12	17	0	2	rs8112667	byfrequency	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	CCDC105-91	NM_173482	exon7	c.C1495A	p.P499T	GCGGACCCCTAGT	.	10	8	1	0	C|0.671;A|0.329	0	0	0	0	0	A	15133926	C	A	15133926	3	1	52	1	0	0	0	0	1	0	0	0	2746	623	22	3	1521	3	CCDC105	19	15133926	Missense_Mutation	SNP	C	TCGA-OR-A5LJ-01A-11D-A29I-10	2098869	15133926	43995057	562	10878										
NOTCH3	4854	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr19	15292567	15292567	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	cagggaggcaggagcaggaaAaggagcccacgccgtcttgg	17	10	1	0	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	NOTCH3-855	NM_000435	exon17	c.T2612C	p.F871S	CAGGAAAAGGAGC	.	422	31	83	0	.	1	1	0	0	0	G	15292567	A	G	15292567	3	3	52	1	0	0	0	0	1	0	0	0	10579	14	1	4	4421	4	NOTCH3	19	15292567	Missense_Mutation	SNP	A	TCGA-OR-A5LJ-01A-11D-A29I-10	158641	15292567	43836416	563	10879										
BRD4	23476	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	15355539	15355539	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	accttcttctgctccctcccGgggtgccccttcttttttga	7	16	3	1	rs201923211		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	BRD4-767	NM_058243	exon12	c.C2193T	p.P731P	CCTCCCGGGGTGC	.	213	72	123	0	.	23	14	9	0	0	A	15355539	G	A	15355539	2	1	52	1	0	0	0	0	0	0	0	1	1507	1103	39	1		1	BRD4	19	15355539	Silent	SNP	G	TCGA-OR-A5LJ-01A-11D-A29I-10	62972	15355539	43773444	564	10880										
CYP4F8	11283	broad.mit.edu;bcgsc.ca	37	chr19	15740063	15740063	+	RNA	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	gtggtcctggcgctcacgctGctgcgcttccgcatcctgcc	12	17	1	0	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	CYP4F8-90	.	.	.	.	CACGCTGCTGCGC	.	361	12	216	0	.	1	1	0	0	0	A	15740063	G	A	15740063	1	1	52	0	1	0	0	0	0	0	0	0	4197	1306	46	3		3	CYP4F8	19	15740063	RNA	SNP	G	TCGA-OR-A5LJ-01A-11D-A29I-10	384524	15740063	43388920	565	10881										
MAP1S	55201	hgsc.bcm.edu	37	chr19	17837425	17837425	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	cgccgagcgcacgctggcctCtgtgtgcgccctgctggtgt	15	15	1	0	rs17710707	byfrequency	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	MAP1S-90	NM_018174	exon5	c.C1232G	p.S411C	TGGCCTCTGTGTG	.	12	7	3	0	C|0.883;G|0.117	9	4	5	0	0	G	17837425	C	G	17837425	3	3	52	1	0	0	0	0	1	0	0	0	9262	913	32	3	1250	3	MAP1S	19	17837425	Missense_Mutation	SNP	C	TCGA-OR-A5LJ-01A-11D-A29I-10	2097362	17837425	41291558	566	10882										
JAK3	3718	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr19	17945987	17945987	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	cccgagccaggagcaccttcCgggcagagacattgccatgg	13	14	0	1	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	JAK3-2418	NM_000215	exon15	c.G1952A	p.R651Q	ACCTTCCGGGCAG	.	145	13	85	0	.	6	6	0	0	0	T	17945987	C	T	17945987	3	4	52	1	0	0	0	0	1	0	0	0	7960	652	23	1	1462	1	JAK3	19	17945987	Missense_Mutation	SNP	C	TCGA-OR-A5LJ-01A-11D-A29I-10	108562	17945987	41182996	567	10883										
ATP13A1	57130	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	19770410	19770410	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	caggcaaatcaaggactcacTtgttgctcccaaatttcttc	6	12	3	0	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	ATP13A1-138	NM_020410	exon3	c.A677C	p.K226T	ACTCACTTGTTGC	.	192	23	94	0	.	0	0	0	0	0	G	19770410	T	G	19770410	3	3	52	1	0	0	0	0	1	0	0	0	1124	1623	56	5	3033	5	ATP13A1	19	19770410	Missense_Mutation	SNP	T	TCGA-OR-A5LJ-01A-11D-A29I-10	1824423	19770410	39358573	568	10884										
PLEKHF1	79156	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	30165469	30165469	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	gcccggcccatctgcggagcGtccagtggagatgacgatga	15	12	1	3	rs143273878	byfrequency;alternate_allele	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	PLEKHF1-226	NM_024310	exon2	c.G723A	p.A241A	CGGAGCGTCCAGT	.	89	25	35	0	G|0.999;T|0.001	8	4	4	0	0	A	30165469	G	A	30165469	2	1	52	1	0	0	0	0	0	0	0	1	12095	1132	40	1		1	PLEKHF1	19	30165469	Silent	SNP	G	TCGA-OR-A5LJ-01A-11D-A29I-10	10395059	30165469	28963514	569	10885										
TSHZ3	57616	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	31769263	31769263	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	taggtttctcgtcagtgaccGctttctccttgtcgacttcc	8	13	3	1	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	TSHZ3-232	NM_020856	exon2	c.C1436T	p.A479V	GTGACCGCTTTCT	.	155	25	107	0	.	3	3	0	0	0	A	31769263	G	A	31769263	3	1	52	1	0	0	0	0	1	0	0	0	16663	1087	38	1	1813	1	TSHZ3	19	31769263	Missense_Mutation	SNP	G	TCGA-OR-A5LJ-01A-11D-A29I-10	1603794	31769263	27359720	570	10886										
DMKN	93099	ucsc.edu;bcgsc.ca	37	chr19	35991471	35991471	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	gcacgtttctgcagtgatgaCgcgtccgcaccctgaaagga	12	12	1	3	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	DMKN-155	NM_033317	exon12	c.G1251A	p.A417A	TGATGACGCGTCC	.	174	68	126	2	.	0	0	0	0	0	T	35991471	C	T	35991471	2	4	52	1	0	0	0	0	0	0	0	1	4593	523	19	1		1	DMKN	19	35991471	Silent	SNP	C	TCGA-OR-A5LJ-01A-11D-A29I-10	4222208	35991471	23137512	571	10887										
MLL4	8085	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr19	36218685	36218686	+	Frame_Shift_Del	DEL	TG	TG	-													0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	gaggatggccactacaagtcTgtggtgagtggtacaccagg					novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	TG	TG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	MLL4-697	NM_014727	exon17	c.4389_4390del	p.1463_1464del	CAAGTCTGTGGTG	.	264	39	259	0	.	0	0	0	0	0	-	36218686	TG	-	36218685	7	5	52	1	0	1	0	1	0	0	0	0	9651	1567	55	0	4455	0	MLL4	19	36218685	Frame_Shift_Del	DEL	TG	TCGA-OR-A5LJ-01A-11D-A29I-10	227214	36218685	22910298	572	10888										
MLL4	8085	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	36229230	36229230	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	gatgactttgatgtagtggaCgccacgatgcatggcaatgc	13	8	0	2	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	MLL4-697	NM_014727	exon37	c.C7920T	p.D2640D	AGTGGACGCCACG	.	229	84	161	2	.	116	60	56	0	0	T	36229230	C	T	36229230	2	4	52	1	0	0	0	0	0	0	0	1	9651	535	19	1		1	MLL4	19	36229230	Silent	SNP	C	TCGA-OR-A5LJ-01A-11D-A29I-10	10545	36229230	22899753	573	10889										
KIRREL2	84063	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr19	36357214	36357214	+	Frame_Shift_Del	DEL	C	C	-													0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	aacccacacctgggcatggtCcccccctgcagactttacag					novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	KIRREL2-93	NM_199180	exon15	c.1947delC	p.V649fs	CATGGTCCCCCCC	.	32	18	31	0	.	0	0	0	0	0	-	36357214	C	-	36357214	7	5	52	1	0	1	0	1	0	0	0	0	8346	842	30	0	2005	0	KIRREL2	19	36357214	Frame_Shift_Del	DEL	C	TCGA-OR-A5LJ-01A-11D-A29I-10	127984	36357214	22771769	574	10890										
ZNF793	390927	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr19	38028650	38028650	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	attggagaactcacacaggaGagaagccctatgggtgcaat	12	8	1	2	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	ZNF793-68	NM_001013659	exon8	c.G1090C	p.E364Q	ACAGGAGAGAAGC	.	95	9	66	0	.	1	1	0	0	0	C	38028650	G	C	38028650	3	2	52	1	0	0	0	0	1	0	0	0	18202	943	33	3	1104	3	ZNF793	19	38028650	Missense_Mutation	SNP	G	TCGA-OR-A5LJ-01A-11D-A29I-10	1671436	38028650	21100333	575	10891										
SIPA1L3	23094	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr19	38609984	38609985	+	Frame_Shift_Ins	INS	-	-	C													0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	aaagacgctcctcctttcggINScccccccatccccagtggaa					novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	SIPA1L3-91	NM_015073	exon9	c.2330_2331insC	p.G777fs	CTTTCGGCCCCCC	.	85	35	86	0	.	0	0	0	0	0	C	38609985	-	C	38609984	7	5	52	1	0	1	1	0	0	0	0	0	14366	1203	42	0	2356	0	SIPA1L3	19	38609984	Frame_Shift_Ins	INS	-	TCGA-OR-A5LJ-01A-11D-A29I-10	581334	38609984	20518999	576	10892										
SPINT2	10653	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	38780794	38780794	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	acgcagtcactgggccttgcCgtgcatccttcccacgctgg	11	16	1	0	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	SPINT2-90	NM_021102	exon5	c.C427T	p.R143C	CCTTGCCGTGCAT	.	172	99	198	0	.	32	22	10	0	0	T	38780794	C	T	38780794	3	4	52	1	0	0	0	0	1	0	0	0	15106	652	23	1	445	1	SPINT2	19	38780794	Missense_Mutation	SNP	C	TCGA-OR-A5LJ-01A-11D-A29I-10	170810	38780794	20348189	577	10893										
RYR1	6261	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	39018344	39018344	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	tgtaccggggcgtcccgggtCgcgaggaggacgccgatgac	18	12	0	1	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	RYR1-100	NM_000540	exon73	c.C10744T	p.R3582C	CCGGGTCGCGAGG	.	244	119	237	1	.	0	0	0	0	0	T	39018344	C	T	39018344	3	4	52	1	0	0	0	0	1	0	0	0	13803	884	31	1	11034	1	RYR1	19	39018344	Missense_Mutation	SNP	C	TCGA-OR-A5LJ-01A-11D-A29I-10	237550	39018344	20110639	578	10894										
PLEKHG2	64857	hgsc.bcm.edu;bcgsc.ca	37	chr19	39905656	39905656	+	Frame_Shift_Del	DEL	C	C	-													0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	tgcagcccccaccatggcctCcccccgaggttctgggagct					novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	PLEKHG2-274	NM_022835	exon3	c.134delC	p.S45fs	TGGCCTCCCCCCG	.	176	76	195	0	.	0	0	0	0	0	-	39905656	C	-	39905656	7	5	52	1	0	1	0	1	0	0	0	0	12098	855	30	0	140	0	PLEKHG2	19	39905656	Frame_Shift_Del	DEL	C	TCGA-OR-A5LJ-01A-11D-A29I-10	887312	39905656	19223327	579	10895										
FCGBP	8857	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr19	40368454	40368454	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	ttgaagaagctctcaggtggCacatgagcatggcaggtggt	15	7	1	3	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	FCGBP-98	NM_003890	exon28	c.G12894A	p.V4298V	AGGTGGCACATGA	.	399	56	360	0	.	0	0	0	0	0	T	40368454	C	T	40368454	2	4	52	1	0	0	0	0	0	0	0	1	5797	697	25	3		3	FCGBP	19	40368454	Silent	SNP	C	TCGA-OR-A5LJ-01A-11D-A29I-10	462798	40368454	18760529	580	10896										
PSMC4	5704	bcgsc.ca	37	chr19	40486359	40486359	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	tgaggaggttgacttggaagActgtatcctgctccagaagt	13	7	0	4	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	PSMC4-91	NM_006503	exon9	c.A1085T	p.D362V	TGGAAGACTGTAT	.	90	39	72	2	.	4	3	1	0	0	T	40486359	A	T	40486359	3	4	52	1	0	0	0	0	1	0	0	0	12721	275	10	5	1119	5	PSMC4	19	40486359	Missense_Mutation	SNP	A	TCGA-OR-A5LJ-01A-11D-A29I-10	117905	40486359	18642624	581	10897										
LTBP4	8425	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	41132999	41132999	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	gtccaccttaccagggcctcCcatatgggcctgagttgtac	10	14	0	1	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	LTBP4-93	.	.	.	.	GGCCTCCCATATG	.	105	43	95	0	.	60	31	29	0	0	T	41132999	C	T	41132999	3	4	52	1	0	0	0	0	1	0	0	0	9103	623	22	3	4720	3	LTBP4	19	41132999	Missense_Mutation	SNP	C	TCGA-OR-A5LJ-01A-11D-A29I-10	646640	41132999	17995984	582	10898										
ADCK4	79934	broad.mit.edu	37	chr19	41211038	41211038	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	gcatgaagtcggcgctctggCggacccgctcaaagatgtgc	14	12	2	2	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	ADCK4-319	NM_024876	exon7	c.G539A	p.R180H	CTCTGGCGGACCC	.	171	6	189	0	.	17	17	0	0	0	T	41211038	C	T	41211038	3	4	52	1	0	0	0	0	1	0	0	0	290	768	27	1	1131	1	ADCK4	19	41211038	Missense_Mutation	SNP	C	TCGA-OR-A5LJ-01A-11D-A29I-10	78039	41211038	17917945	583	10899										
ITPKC	80271	broad.mit.edu;bcgsc.ca	37	chr19	41245300	41245300	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	ctcttcgtgcacgaccacacCggcctggccaaggtctggat	11	15	2	0	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	ITPKC-115	NM_025194	exon7	c.C1887T	p.T629T	CCACACCGGCCTG	.	326	9	274	0	.	5	5	0	0	0	T	41245300	C	T	41245300	2	4	52	1	0	0	0	0	0	0	0	1	7940	639	23	1		1	ITPKC	19	41245300	Silent	SNP	C	TCGA-OR-A5LJ-01A-11D-A29I-10	34262	41245300	17883683	584	10900										
GRIK5	2901	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr19	42525580	42525580	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	gttctccaggatgtgggggcGtgcccgcaggcatgggtgtg	19	9	1	0	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	GRIK5-90	NM_002088	exon14	c.C1744T	p.R582C	GGGGGCGTGCCCG	.	74	6	61	0	.	16	15	1	0	0	A	42525580	G	A	42525580	3	1	52	1	0	0	0	0	1	0	0	0	6798	1145	40	1	1222	1	GRIK5	19	42525580	Missense_Mutation	SNP	G	TCGA-OR-A5LJ-01A-11D-A29I-10	1280280	42525580	16603403	585	10901										
LIPE	3991	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr19	42914843	42914843	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	agggccggctccagccccagCgcctgctcccgtacaccggc	12	20	0	0	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	LIPE-154	NM_005357	exon2	c.G1035A	p.A345A	CCCCAGCGCCTGC	.	171	39	37	0	.	6	5	1	0	0	T	42914843	C	T	42914843	2	4	52	1	0	0	0	0	0	0	0	1	8845	755	27	1		1	LIPE	19	42914843	Silent	SNP	C	TCGA-OR-A5LJ-01A-11D-A29I-10	389263	42914843	16214140	586	10902										
PSG6	5675	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	43411758	43411758	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	cagggtgactgggttactgcGgatgccaccatatcggtccc	13	12	0	1	rs200244036		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	PSG6-92	NM_001031850	exon4	c.C955T	p.R319C	TACTGCGGATGCC	.	156	65	137	0	.	0	0	0	0	0	A	43411758	G	A	43411758	3	1	52	1	0	0	0	0	1	0	0	0	12691	1116	39	1	403	1	PSG6	19	43411758	Missense_Mutation	SNP	G	TCGA-OR-A5LJ-01A-11D-A29I-10	496915	43411758	15717225	587	10903										
PVR	5817	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	45157249	45157249	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	ccaccctgacctgcgatgctCgcagcaacccagagcccaca	8	19	0	2	rs3745145	alternate_allele	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	PVR-90	NM_001135769	exon4	c.C805T	p.R269C	GATGCTCGCAGCA	.	87	50	71	0	C|0.161;G|0.839	48	23	25	0	0	T	45157249	C	T	45157249	3	4	52	1	0	0	0	0	1	0	0	0	12872	884	31	1	819	1	PVR	19	45157249	Missense_Mutation	SNP	C	TCGA-OR-A5LJ-01A-11D-A29I-10	1745491	45157249	13971734	588	10904										
ERCC2	2068	hgsc.bcm.edu	37	chr19	45867259	45867259	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	ctcaccctgcagcacttcgtCgggcagcacggggttggcca	13	15	1	0	rs1799793	byfrequency	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	ERCC2-848	NM_000400	exon10	c.G934A	p.D312N	CTTCGTCGGGCAG	.	14	7	0	0	C|0.804;T|0.196	10	6	4	0	0	T	45867259	C	T	45867259	3	4	52	1	0	0	0	0	1	0	0	0	5226	884	31	1	1461	1	ERCC2	19	45867259	Missense_Mutation	SNP	C	TCGA-OR-A5LJ-01A-11D-A29I-10	710010	45867259	13261724	589	10905										
GPR4	2828	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	46094248	46094248	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	cttggccacatcgctgcgggCgccctcgttgaccaggcagt	13	15	0	1	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	GPR4-92	NM_005282	exon2	c.G877A	p.A293T	TGCGGGCGCCCTC	.	163	79	127	1	.	58	43	15	0	0	T	46094248	C	T	46094248	3	4	52	1	0	0	0	0	1	0	0	0	6714	768	27	1	215	1	GPR4	19	46094248	Missense_Mutation	SNP	C	TCGA-OR-A5LJ-01A-11D-A29I-10	226989	46094248	13034735	590	10906										
DMWD	1762	hgsc.bcm.edu	37	chr19	46289542	46289544	+	In_Frame_Del	DEL	CTC	CTC	-													0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	cctgtgcccgcagcctcgggCtcctcctcctcctcttcgcc					novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	CTC	CTC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	DMWD-90	NM_004943	exon3	c.1210_1212del	p.404_404del	CTCGGGCTCCTCC	.	197	80	41	1	.	0	0	0	0	0	-	46289544	CTC	-	46289542	7	5	52	1	0	1	0	1	0	0	0	0	4604	796	28	0	824	0	DMWD	19	46289542	In_Frame_Del	DEL	CTC	TCGA-OR-A5LJ-01A-11D-A29I-10	195294	46289542	12839441	591	10907										
STRN4	29888	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr19	47236402	47236402	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	ttcactcggctccactgcccCgttgagctccagcgagcggc	11	17	1	1	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	STRN4-90	NM_001039877	exon5	c.G631A	p.G211R	CTGCCCCGTTGAG	.	73	6	41	0	.	40	38	2	0	0	T	47236402	C	T	47236402	3	4	52	1	0	0	0	0	1	0	0	0	15368	652	23	1	1703	1	STRN4	19	47236402	Missense_Mutation	SNP	C	TCGA-OR-A5LJ-01A-11D-A29I-10	946860	47236402	11892581	592	10908										
ARHGAP35	2909	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	47423998	47423998	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	agagtccacgctgggccggcGggataatcatttagtccatc	12	11	1	1	rs142807428	by1000genomes	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	.	NM_004491	exon1	c.G2066A	p.R689Q	GCCGGCGGGATAA	.	119	51	64	0	G|0.999;A|0.000	5	2	3	0	0	A	47423998	G	A	47423998	3	1	52	1	0	0	0	0	1	0	0	0	6816	1116	39	1	2068	1	ARHGAP35	19	47423998	Missense_Mutation	SNP	G	TCGA-OR-A5LJ-01A-11D-A29I-10	187596	47423998	11704985	593	10909										
ZC3H4	23211	broad.mit.edu;bcgsc.ca	37	chr19	47597799	47597799	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	cggcttctctcaggccctccGgaggtatcctgggtctcctc	11	16	3	0	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	ZC3H4-74	NM_015168	exon3	c.C228T	p.S76S	CCCTCCGGAGGTA	.	240	11	199	1	.	1	1	0	0	0	A	47597799	G	A	47597799	2	1	52	1	0	0	0	0	0	0	0	1	17607	1103	39	1		1	ZC3H4	19	47597799	Silent	SNP	G	TCGA-OR-A5LJ-01A-11D-A29I-10	173801	47597799	11531184	594	10910										
FAM83E	54854	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr19	49107038	49107038	+	Frame_Shift_Del	DEL	G	G	-													0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	acctatgaccgagggtttctGggggggcgcaggtgggagcg					novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	FAM83E-91	NM_017708	exon4	c.889delC	p.Q297fs	GTTTCTGGGGGGG	.	117	57	71	0	.	0	0	0	0	0	-	49107038	G	-	49107038	7	5	52	1	0	1	0	1	0	0	0	0	5656	1357	47	0	555	0	FAM83E	19	49107038	Frame_Shift_Del	DEL	G	TCGA-OR-A5LJ-01A-11D-A29I-10	1509239	49107038	10021945	595	10911										
RASIP1	54922	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	49238683	49238683	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	caaagacaagttttctgagcGctccttgcctccagacccag	8	14	1	3	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	RASIP1-228	NM_017805	exon4	c.C949T	p.R317C	CTGAGCGCTCCTT	.	189	92	50	0	.	29	18	11	0	0	A	49238683	G	A	49238683	3	1	52	1	0	0	0	0	1	0	0	0	13113	1087	38	1	1978	1	RASIP1	19	49238683	Missense_Mutation	SNP	G	TCGA-OR-A5LJ-01A-11D-A29I-10	131645	49238683	9890300	596	10912										
DHDH	27294	bcgsc.ca	37	chr19	49445795	49445795	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	agctctccaacacggcctccGtgagcggcaccaagggcatg	12	15	1	1	rs140363616		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	DHDH-90	NM_014475	exon5	c.G718A	p.V240M	GCCTCCGTGAGCG	.	264	129	247	5	G|1.000;A|0.000	5	4	1	0	0	A	49445795	G	A	49445795	3	1	52	1	0	0	0	0	1	0	0	0	4490	1145	40	1	736	1	DHDH	19	49445795	Missense_Mutation	SNP	G	TCGA-OR-A5LJ-01A-11D-A29I-10	207112	49445795	9683188	597	10913										
TRPM4	54795	hgsc.bcm.edu	37	chr19	49699770	49699770	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	gtccgggttgctgcgggggcCgctgcggggggcgccggtgc	23	12	0	0	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	TRPM4-91	NM_017636	exon17	c.C2284T	p.R762C	GGGGGCCGCTGCG	.	12	8	0	0	.	1	0	1	0	0	T	49699770	C	T	49699770	3	4	52	1	0	0	0	0	1	0	0	0	16626	652	23	1	2350	1	TRPM4	19	49699770	Missense_Mutation	SNP	C	TCGA-OR-A5LJ-01A-11D-A29I-10	253975	49699770	9429213	598	10914										
FUZ	80199	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr19	50311889	50311889	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	ttcagttccaggtggaggagCagcagcctgtgggaaaggga	17	7	1	0	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	FUZ-90	NM_025129	exon9	c.G900C	p.L300L	GAGGAGCAGCAGC	.	122	66	83	0	.	2	0	2	0	0	G	50311889	C	G	50311889	2	3	52	1	0	0	0	0	0	0	0	1	6131	697	25	3		3	FUZ	19	50311889	Silent	SNP	C	TCGA-OR-A5LJ-01A-11D-A29I-10	612119	50311889	8817094	599	10915										
PNKP	11284	broad.mit.edu	37	chr19	50370408	50370408	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	ggcaggaagatggggggcgcTcccccaggggggctctcgag	20	11	1	1	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	PNKP-253	NM_007254	exon2	c.A54G	p.G18G	GGGCGCTCCCCCA	.	97	25	39	1	.	33	33	0	0	0	C	50370408	T	C	50370408	2	2	52	1	0	0	0	0	0	0	0	1	12176	1538	54	4		4	PNKP	19	50370408	Silent	SNP	T	TCGA-OR-A5LJ-01A-11D-A29I-10	58519	50370408	8758575	600	10916										
ZNF845	91664	broad.mit.edu	37	chr19	53856028	53856028	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	aatgagtgtggcaagaccttCggtcgaaattcagcccttat	10	9	1	2	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	.	NM_138374	exon4	c.C2100T	p.F700F	GACCTTCGGTCGA	.	98	3	70	0	.	0	0	0	0	0	T	53856028	C	T	53856028	2	4	52	1	0	0	0	0	0	0	0	1	18228	883	31	1		1	ZNF845	19	53856028	Silent	SNP	C	TCGA-OR-A5LJ-01A-11D-A29I-10	3485620	53856028	5272955	601	10917										
LILRB4	11006	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	55177714	55177714	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	agagacaggctgatttccaaCgtcctccaggggctgccgag	13	12	0	2	rs201125273		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	LILRB4-93	NM_006847	exon8	c.C898T	p.R300C	TTCCAACGTCCTC	.	136	62	140	0	C|0.997;T|0.003	4	4	0	0	0	T	55177714	C	T	55177714	3	4	52	1	0	0	0	0	1	0	0	0	8816	536	19	1	928	1	LILRB4	19	55177714	Missense_Mutation	SNP	C	TCGA-OR-A5LJ-01A-11D-A29I-10	1321686	55177714	3951269	602	10918										
NLRP2	55655	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	55494012	55494012	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	agaagaagaagccggtgcccGtcctcctggggagtttgctg	15	10	0	3	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	NLRP2-120	NM_017852	exon6	c.G946A	p.V316I	GTGCCCGTCCTCC	.	129	53	88	0	.	0	0	0	0	0	A	55494012	G	A	55494012	3	1	52	1	0	0	0	0	1	0	0	0	10506	1145	40	1	964	1	NLRP2	19	55494012	Missense_Mutation	SNP	G	TCGA-OR-A5LJ-01A-11D-A29I-10	316298	55494012	3634971	603	10919										
TNNT1	7138	broad.mit.edu	37	chr19	55656925	55656925	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	atctcaccttggtttggggcGttcctcttctgttggtggtg	13	9	3	0	rs139279150	byfrequency;alternate_allele	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	TNNT1-91	NM_001126132	exon6	c.C115T	p.R39C	TGGGGCGTTCCTC	.	47	4	35	0	G|1.000;T|0.000	0	0	0	0	0	A	55656925	G	A	55656925	3	1	52	1	0	0	0	0	1	0	0	0	16367	1145	40	1	757	1	TNNT1	19	55656925	Missense_Mutation	SNP	G	TCGA-OR-A5LJ-01A-11D-A29I-10	162913	55656925	3472058	604	10920										
CCDC106	29903	broad.mit.edu	37	chr19	56162847	56162847	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	ctttgggaagcccaaggcccGggagaggcagcgaggtgagt	18	9	0	2	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	CCDC106-90	NM_013301	exon5	c.G512A	p.R171Q	AGGCCCGGGAGAG	.	330	8	195	0	.	1	1	0	0	0	A	56162847	G	A	56162847	3	1	52	1	0	0	0	0	1	0	0	0	2747	1116	39	1	526	1	CCDC106	19	56162847	Missense_Mutation	SNP	G	TCGA-OR-A5LJ-01A-11D-A29I-10	505922	56162847	2966136	605	10921										
ZNF470	388566	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr19	57088962	57088964	+	In_Frame_Del	DEL	TAT	TAT	-													0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	ctcttatacgtcatcggcgaTattatcatactggagagaaa					novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	TAT	TAT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	ZNF470-92	NM_001001668	exon6	c.1165_1167del	p.389_389del	CGGCGATATTATC	.	161	57	104	0	.	0	0	0	0	0	-	57088964	TAT	-	57088962	7	5	52	1	0	1	0	1	0	0	0	0	17966	1406	49	0	1179	0	ZNF470	19	57088962	In_Frame_Del	DEL	TAT	TCGA-OR-A5LJ-01A-11D-A29I-10	926115	57088962	2040021	606	10922										
PEG3	5178	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	57328441	57328441	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	gacactgaacgacctcccacActcatcacatacatatggca	5	15	2	1	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	PEG3-164	NM_001146184	exon9	c.T1369C	p.C457R	TCCCACACTCATC	.	398	193	321	1	.	7	0	7	0	0	G	57328441	A	G	57328441	3	3	52	1	0	0	0	0	1	0	0	0	11749	159	6	4	3401	4	PEG3	19	57328441	Missense_Mutation	SNP	A	TCGA-OR-A5LJ-01A-11D-A29I-10	239479	57328441	1800542	607	10923										
ZNF419	79744	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr19	58002904	58002904	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	gaatggagattgcttgatgaCgctcagaggctcctctaccg	12	10	2	4	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	ZNF419-90	NM_001098494	exon3	c.C141T	p.D47D	TGATGACGCTCAG	.	379	122	268	0	.	9	7	2	0	0	T	58002904	C	T	58002904	2	4	52	1	0	0	0	0	0	0	0	1	17933	535	19	1		1	ZNF419	19	58002904	Silent	SNP	C	TCGA-OR-A5LJ-01A-11D-A29I-10	674463	58002904	1126079	608	10924										
ZNF814	730051	ucsc.edu	37	chr19	58385033	58385033	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	ccacattctccacacccataAgatctttctctagggtgaac	5	14	3	2	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	.	NM_001144989	exon3	c.T1725C	p.S575S	CCCATAAGATCTT	.	113	1	88	0	.	6	4	2	0	0	G	58385033	A	G	58385033	2	3	52	1	0	0	0	0	0	0	0	1	18213	59	3	4		4	ZNF814	19	58385033	Silent	SNP	A	TCGA-OR-A5LJ-01A-11D-A29I-10	382129	58385033	743950	609	10925										
ZSCAN22	342945	bcgsc.ca	37	chr19	58846516	58846516	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	ggagcccagagtcccaagagCggagaggaagccgctgtgct	16	11	0	3	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	ZSCAN22-91	NM_181846	exon2	c.C348T	p.S116S	CAAGAGCGGAGAG	.	207	86	164	3	.	1	1	0	0	0	T	58846516	C	T	58846516	2	4	52	1	0	0	0	0	0	0	0	1	18271	767	27	1		1	ZSCAN22	19	58846516	Silent	SNP	C	TCGA-OR-A5LJ-01A-11D-A29I-10	461483	58846516	282467	610	10926										
ZBTB45	84878	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	59028363	59028363	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	gcctggccctcgcctgggccGccaccttcgccatcctcgcc	10	22	0	0	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	ZBTB45-90	NM_032792	exon2	c.C678T	p.G226G	TGGGCCGCCACCT	.	224	29	158	0	.	10	8	2	0	0	A	59028363	G	A	59028363	2	1	52	1	0	0	0	0	0	0	0	1	17583	1074	38	1		1	ZBTB45	19	59028363	Silent	SNP	G	TCGA-OR-A5LJ-01A-11D-A29I-10	181847	59028363	100620	611	10927										
TCF15	6939	hgsc.bcm.edu	37	chr20	590456	590456	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	cccttggcactgcccgcggcAcggaagcacggctgcccgtc	13	18	0	0	rs282164	byfrequency	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	TCF15-90	NM_004609	exon1	c.T426C	p.R142R	CGCGGCACGGAAG	.	5	5	0	0	A|0.165;G|0.835	1	0	1	0	0	G	590456	A	G	590456	2	3	52	1	0	0	0	0	0	0	0	1	15725	146	6	4		4	TCF15	20	590456	Silent	SNP	A	TCGA-OR-A5LJ-01A-11D-A29I-10		590456	62435064	612	10928										
C20orf194	25943	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr20	3275220	3275220	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	gagtaactttagggaactccGtttctccccagcaggctggc	11	12	1	0	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	C20orf194-68	NM_001009984	exon24	c.C2074T	p.R692W	AACTCCGTTTCTC	.	68	24	75	0	.	1	1	0	0	0	A	3275220	G	A	3275220	3	1	52	1	0	0	0	0	1	0	0	0	2105	1144	40	1	1515	1	C20orf194	20	3275220	Missense_Mutation	SNP	G	TCGA-OR-A5LJ-01A-11D-A29I-10	2684764	3275220	59750300	613	10929										
GFRA4	64096	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr20	3640605	3640605	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	gaagtatggagagcagggagCgtctctccagggccctgcct	15	11	1	1	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	GFRA4-90	NM_145762	exon5	c.G851A	p.R284H	AGGGAGCGTCTCT	.	61	25	60	0	.	0	0	0	0	0	T	3640605	C	T	3640605	3	4	52	1	0	0	0	0	1	0	0	0	6370	768	27	1	52	1	GFRA4	20	3640605	Missense_Mutation	SNP	C	TCGA-OR-A5LJ-01A-11D-A29I-10	365385	3640605	59384915	614	10930										
CEP250	11190	broad.mit.edu;bcgsc.ca	37	chr20	34092645	34092645	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	ctttagagcccaggctgcagCgggagctggagcggctacag	16	11	0	1	rs147676735		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	CEP250-27	NM_007186	exon30	c.C6448T	p.R2150W	CTGCAGCGGGAGC	.	191	11	179	2	C|1.000;T|0.000	8	8	0	0	0	T	34092645	C	T	34092645	3	4	52	1	0	0	0	0	1	0	0	0	3258	759	27	1	6554	1	CEP250	20	34092645	Missense_Mutation	SNP	C	TCGA-OR-A5LJ-01A-11D-A29I-10	30452040	34092645	28932875	615	10931										
DLGAP4	22839	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr20	35060497	35060497	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	cagcaccctccaatttccccGtggcgaggccaaggcccgtg	11	17	0	0	rs202172659		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	DLGAP4-94	NM_014902	exon2	c.G377A	p.R126H	TTCCCCGTGGCGA	.	134	62	98	0	G|0.999;A|0.001	0	0	0	0	0	A	35060497	G	A	35060497	3	1	52	1	0	0	0	0	1	0	0	0	4573	1145	40	1	379	1	DLGAP4	20	35060497	Missense_Mutation	SNP	G	TCGA-OR-A5LJ-01A-11D-A29I-10	967852	35060497	27965023	616	10932										
PPP1R16B	26051	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr20	37546897	37546897	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	tgagaatggcctccgggctcCggtcagtgcctaccagtatg	13	12	1	1	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	PPP1R16B-228	NM_015568	exon11	c.C1292T	p.P431L	GGGCTCCGGTCAG	.	219	18	171	0	.	2	2	0	0	0	T	37546897	C	T	37546897	3	4	52	1	0	0	0	0	1	0	0	0	12398	652	23	1	1330	1	PPP1R16B	20	37546897	Missense_Mutation	SNP	C	TCGA-OR-A5LJ-01A-11D-A29I-10	2486400	37546897	25478623	617	10933										
PLCG1	5335	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr20	39795024	39795024	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	tcccacagaccaacgcccacGagagcaaagagtgagggaag	12	12	0	4	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	PLCG1-911	NM_182811	exon17	c.G1990A	p.E664K	GCCCACGAGAGCA	.	202	95	186	1	.	2	0	2	0	0	A	39795024	G	A	39795024	3	1	52	1	0	0	0	0	1	0	0	0	12064	1059	37	1	2056	1	PLCG1	20	39795024	Missense_Mutation	SNP	G	TCGA-OR-A5LJ-01A-11D-A29I-10	2248127	39795024	23230496	618	10934										
JPH2	57158	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr20	42815069	42815069	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	gctctgccggattccgtagcGtcccttgaagccatgtgtcc	11	14	1	1	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	JPH2-91	NM_175913	exon1	c.C277T	p.R93C	CGTAGCGTCCCTT	.	150	8	138	0	.	1	1	0	0	0	A	42815069	G	A	42815069	3	1	52	1	0	0	0	0	1	0	0	0	7982	1145	40	1	1848	1	JPH2	20	42815069	Missense_Mutation	SNP	G	TCGA-OR-A5LJ-01A-11D-A29I-10	3020045	42815069	20210451	619	10935										
TTPAL	79183	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr20	43118014	43118014	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	ctggacactgccacctggaaCgcggtactgctggcttcaga	12	13	1	1	rs180792442		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	TTPAL-153	NM_001039199	exon5	c.C861T	p.N287N	CTGGAACGCGGTA	.	206	11	214	0	C|0.999;T|0.000	5	5	0	0	0	T	43118014	C	T	43118014	2	4	52	1	0	0	0	0	0	0	0	1	16775	535	19	1		1	TTPAL	20	43118014	Silent	SNP	C	TCGA-OR-A5LJ-01A-11D-A29I-10	302945	43118014	19907506	620	10936										
PABPC1L	80336	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr20	43559220	43559220	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	gtgggcaccaagccactctaCgtggcactggcccagcgcaa	12	15	1	0	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	PABPC1L-47	NM_001124756	exon8	c.C1092T	p.Y364Y	ACTCTACGTGGCA	.	202	87	148	1	.	16	12	4	0	0	T	43559220	C	T	43559220	2	4	52	1	0	0	0	0	0	0	0	1	11393	547	19	1		1	PABPC1L	20	43559220	Silent	SNP	C	TCGA-OR-A5LJ-01A-11D-A29I-10	441206	43559220	19466300	621	10937										
DNTTIP1	116092	hgsc.bcm.edu	37	chr20	44420682	44420682	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	gccgagcagccgcggggaccTagcggggccgagaggggcgg	22	12	0	1	rs2664591	byfrequency	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	DNTTIP1-91	NM_052951	exon1	c.T39C	p.P13P	GGGACCTAGCGGG	.	6	6	0	0	T|0.311;C|0.689	6	0	6	0	0	C	44420682	T	C	44420682	2	2	52	1	0	0	0	0	0	0	0	1	4692	1509	53	4		4	DNTTIP1	20	44420682	Silent	SNP	T	TCGA-OR-A5LJ-01A-11D-A29I-10	861462	44420682	18604838	622	10938										
ELMO2	63916	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr20	45023110	45023110	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	gccactttgacaatgtctgaCggtggtggcatcgttcccaa	11	11	1	2	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	ELMO2-91	NM_182764	exon2	c.G12A	p.P4P	GTCTGACGGTGGT	.	379	156	250	0	.	0	0	0	0	0	T	45023110	C	T	45023110	2	4	52	1	0	0	0	0	0	0	0	1	5079	523	19	1		1	ELMO2	20	45023110	Silent	SNP	C	TCGA-OR-A5LJ-01A-11D-A29I-10	602428	45023110	18002410	623	10939										
SULF2	55959	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr20	46293982	46293982	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	attcttctggccgctttttcTtcaggtgacctcggacttcc	8	13	4	1	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	SULF2-293	NM_001161841	exon14	c.A1958C	p.K653T	TTTTTCTTCAGGT	.	171	79	94	1	.	148	66	82	0	0	G	46293982	T	G	46293982	3	3	52	1	0	0	0	0	1	0	0	0	15408	1609	56	5	686	5	SULF2	20	46293982	Missense_Mutation	SNP	T	TCGA-OR-A5LJ-01A-11D-A29I-10	1270872	46293982	16731538	624	10940										
SPATA2	9825	broad.mit.edu	37	chr20	48524772	48524772	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	cagcatgctgaaggcgccgtGcagagcccgcaggctagagg	16	12	0	3	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	SPATA2-91	NM_006038	exon2	c.C256T	p.H86Y	CGCCGTGCAGAGC	.	181	6	164	0	.	2	2	0	0	0	A	48524772	G	A	48524772	3	1	52	1	0	0	0	0	1	0	0	0	15042	1319	46	3	1314	3	SPATA2	20	48524772	Missense_Mutation	SNP	G	TCGA-OR-A5LJ-01A-11D-A29I-10	2230790	48524772	14500748	625	10941										
BMP7	655	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr20	55777574	55777574	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	tgcaggcccaggttgtgccgCggattgaccacccagtggtt	14	12	0	1	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	BMP7-187	NM_001719	exon3	c.G717A	p.P239P	GTGCCGCGGATTG	.	107	46	84	0	.	2	0	2	0	0	T	55777574	C	T	55777574	2	4	52	1	0	0	0	0	0	0	0	1	1466	755	27	1		1	BMP7	20	55777574	Silent	SNP	C	TCGA-OR-A5LJ-01A-11D-A29I-10	7252802	55777574	7247946	626	10942										
RAE1	8480	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr20	55931510	55931510	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	ttgttactacaggttcgctgCtgggaagttcaagacagtgg	13	7	1	1	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	RAE1-226	NM_003610	exon4	c.C204T	p.C68C	TCGCTGCTGGGAA	.	141	61	93	0	.	0	0	0	0	0	T	55931510	C	T	55931510	2	4	52	1	0	0	0	0	0	0	0	1	13033	805	28	3		3	RAE1	20	55931510	Silent	SNP	C	TCGA-OR-A5LJ-01A-11D-A29I-10	153936	55931510	7094010	627	10943										
CDH4	1002	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr20	60499460	60499460	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	caacggccagatcaccacggCggcagtgctggaccgtgagt	14	13	1	2	rs1051676		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	CDH4-282	NM_001794	exon11	c.C1697T	p.A566V	CCACGGCGGCAGT	.	241	96	208	0	C|1.000;T|0.000	4	1	3	0	0	T	60499460	C	T	60499460	3	4	52	1	0	0	0	0	1	0	0	0	3118	768	27	1	1739	1	CDH4	20	60499460	Missense_Mutation	SNP	C	TCGA-OR-A5LJ-01A-11D-A29I-10	4567950	60499460	2526060	628	10944										
CDH4	1002	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr20	60509119	60509119	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	ggctccctcccccaggactaCgacctcagccagctgcagca	9	19	1	0	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	CDH4-282	NM_001794	exon15	c.C2385T	p.Y795Y	GGACTACGACCTC	.	181	84	78	0	.	0	0	0	0	0	T	60509119	C	T	60509119	2	4	52	1	0	0	0	0	0	0	0	1	3118	547	19	1		1	CDH4	20	60509119	Silent	SNP	C	TCGA-OR-A5LJ-01A-11D-A29I-10	9659	60509119	2516401	629	10945										
OGFR	11054	broad.mit.edu	37	chr20	61443813	61443813	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	gagcacttccggccccgctgCaagttcgtctgggggcccca	13	16	1	0	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	OGFR-68	NM_007346	exon7	c.C846T	p.C282C	CCGCTGCAAGTTC	.	130	17	45	1	.	66	57	9	0	0	T	61443813	C	T	61443813	2	4	52	1	0	0	0	0	0	0	0	1	10872	718	25	3		3	OGFR	20	61443813	Silent	SNP	C	TCGA-OR-A5LJ-01A-11D-A29I-10	934694	61443813	1581707	630	10946										
SRMS	6725	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr20	62172334	62172334	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	ctcgcatgatctgctgcagcGtctcgtggttggtcatccct	11	13	3	1	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	SRMS-521	NM_080823	exon8	c.C1304T	p.T435M	TGCAGCGTCTCGT	.	75	35	19	0	.	0	0	0	0	0	A	62172334	G	A	62172334	3	1	52	1	0	0	0	0	1	0	0	0	15189	1145	40	1	166	1	SRMS	20	62172334	Missense_Mutation	SNP	G	TCGA-OR-A5LJ-01A-11D-A29I-10	728521	62172334	853186	631	10947										
TNFRSF6B	8771	hgsc.bcm.edu;broad.mit.edu	37	chr20	62328346	62328346	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	cgtgtggcccgtgtccaccgCgccactacacgcagttctgg	12	16	1	0	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	TNFRSF6B-651	NM_003823	exon1	c.C226T	p.R76C	CCACCGCGCCACT	.	154	10	23	0	.	8	8	0	0	0	T	62328346	C	T	62328346	3	4	52	1	0	0	0	0	1	0	0	0	16335	768	27	1	228	1	TNFRSF6B	20	62328346	Missense_Mutation	SNP	C	TCGA-OR-A5LJ-01A-11D-A29I-10	156012	62328346	697174	632	10948										
PWP2	5822	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr21	45548439	45548439	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	agtctccctttcagagccggGacgctgctgcctgtcattca	10	14	4	1	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	PWP2-91	NM_005049	exon20	c.G2517A	p.G839G	AGCCGGGACGCTG	.	109	98	154	0	.	2	0	2	0	0	A	45548439	G	A	45548439	2	1	52	1	0	0	0	0	0	0	0	1	12879	1161	41	3		3	PWP2	21	45548439	Silent	SNP	G	TCGA-OR-A5LJ-01A-11D-A29I-10		45548439	2581456	633	10949										
COL18A1	80781	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr21	46931077	46931077	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	gttctcaggctctgagggtcCgctgaagcccggggcacgca	15	13	2	2	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	COL18A1-90	NM_030582	exon41	c.C4277T	p.P1426L	AGGGTCCGCTGAA	.	66	17	110	0	.	236	165	71	0	0	T	46931077	C	T	46931077	3	4	52	1	0	0	0	0	1	0	0	0	3681	652	23	1	5258	1	COL18A1	21	46931077	Missense_Mutation	SNP	C	TCGA-OR-A5LJ-01A-11D-A29I-10	1382638	46931077	1198818	634	10950										
SLC25A18	83733	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr22	18070754	18070754	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	cttaacaacctggggttcaaCgagctcgccggtaaggcgtc	12	12	1	0	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	SLC25A18-90	NM_031481	exon9	c.C639T	p.N213N	GTTCAACGAGCTC	.	173	142	301	0	.	0	0	0	0	0	T	18070754	C	T	18070754	2	4	52	1	0	0	0	0	0	0	0	1	14515	535	19	1		1	SLC25A18	22	18070754	Silent	SNP	C	TCGA-OR-A5LJ-01A-11D-A29I-10		18070754	33233812	635	10951										
RTN4R	65078	ucsc.edu;bcgsc.ca	37	chr22	20230060	20230060	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	ggtcgaggctgtgcagcccaCggaaggcgcgctcgggcacg	18	13	0	0	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	RTN4R-90	NM_023004	exon2	c.G596A	p.R199H	AGCCCACGGAAGG	.	184	151	153	2	.	82	0	82	0	0	T	20230060	C	T	20230060	3	4	52	1	0	0	0	0	1	0	0	0	13765	536	19	1	829	1	RTN4R	22	20230060	Missense_Mutation	SNP	C	TCGA-OR-A5LJ-01A-11D-A29I-10	2159306	20230060	31074506	636	10952										
AIFM3	150209	broad.mit.edu	37	chr22	21332292	21332292	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	ttggcagatggctcatgctcAgggtatggccagtcccgagg	15	10	2	1	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	AIFM3-280	NM_001146288	exon16	c.A1493G	p.Q498R	ATGCTCAGGGTAT	.	107	4	189	1	.	0	0	0	0	0	G	21332292	A	G	21332292	3	3	52	1	0	0	0	0	1	0	0	0	428	188	7	4	1551	4	AIFM3	22	21332292	Missense_Mutation	SNP	A	TCGA-OR-A5LJ-01A-11D-A29I-10	1102232	21332292	29972274	637	10953										
MYO18B	84700	broad.mit.edu	37	chr22	26422656	26422656	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	tacaaatacatccccgctgtCgagggaaaagctgcccagtc	9	13	0	0	rs192136611	by1000genomes;alternate_allele	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	MYO18B-142	NM_032608	exon43	c.C6716T	p.S2239L	CGCTGTCGAGGGA	.	73	4	103	0	C|0.999;G|0.000	0	0	0	0	0	T	26422656	C	T	26422656	3	4	52	1	0	0	0	0	1	0	0	0	10094	893	31	1	6882	1	MYO18B	22	26422656	Missense_Mutation	SNP	C	TCGA-OR-A5LJ-01A-11D-A29I-10	5090364	26422656	24881910	638	10954										
SLC5A4	6527	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr22	32614516	32614516	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	agagttcaggcatagtagccGtgaataaagaccaccacagc	10	10	1	3	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	SLC5A4-90	NM_014227	exon15	c.C1965T	p.H655H	GTAGCCGTGAATA	.	75	66	119	0	.	0	0	0	0	0	A	32614516	G	A	32614516	2	1	52	1	0	0	0	0	0	0	0	1	14702	1136	40	1		1	SLC5A4	22	32614516	Silent	SNP	G	TCGA-OR-A5LJ-01A-11D-A29I-10	6191860	32614516	18690050	639	10955										
TOM1	10043	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr22	35734781	35734781	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	cggcagcagagcactggcgcGgtaagcagaggggccatcct	16	12	0	2	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	TOM1-91	NM_001135732	exon12	c.G1224A	p.A408A	TGGCGCGGTAAGC	.	37	5	33	0	.	1	1	0	0	0	A	35734781	G	A	35734781	2	1	52	1	0	0	0	0	0	0	0	1	16388	1130	39	1		1	TOM1	22	35734781	Silent	SNP	G	TCGA-OR-A5LJ-01A-11D-A29I-10	3120265	35734781	15569785	640	10956										
FOXRED2	80020	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr22	36900582	36900582	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	ctgaggtctccaacgtagtgGgtggcccaggacagacggac	15	11	1	2	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	FOXRED2-92	NM_001102371	exon3	c.C759A	p.T253T	GTAGTGGGTGGCC	.	87	75	135	1	.	3	0	3	0	0	T	36900582	G	T	36900582	2	4	52	1	0	0	0	0	0	0	0	1	6053	1219	43	3		3	FOXRED2	22	36900582	Silent	SNP	G	TCGA-OR-A5LJ-01A-11D-A29I-10	1165801	36900582	14403984	641	10957										
TRIOBP	11078	hgsc.bcm.edu	37	chr22	38122462	38122462	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	cagcagcgggggccgcacccAcagccctggccgtgcagagg	16	16	0	1	rs739138	byfrequency	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	TRIOBP-136	NM_001039141	exon7	c.A3899G	p.H1300R	GCACCCACAGCCC	.	7	7	0	0	A|0.354;G|0.646	0	0	0	0	0	G	38122462	A	G	38122462	3	3	52	1	0	0	0	0	1	0	0	0	16591	159	6	4	3917	4	TRIOBP	22	38122462	Missense_Mutation	SNP	A	TCGA-OR-A5LJ-01A-11D-A29I-10	1221880	38122462	13182104	642	10958										
EIF3L	51386	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr22	38273801	38273801	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	aatatggggacaagatgttgCgcatgcagaaaggtgaccca	13	7	0	3	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	EIF3L-69	NM_016091	exon11	c.C1198T	p.R400C	ATGTTGCGCATGC	.	169	140	279	1	.	285	18	267	0	0	T	38273801	C	T	38273801	3	4	52	1	0	0	0	0	1	0	0	0	5035	768	27	1	1240	1	EIF3L	22	38273801	Missense_Mutation	SNP	C	TCGA-OR-A5LJ-01A-11D-A29I-10	151339	38273801	13030765	643	10959										
SGSM3	27352	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr22	40803553	40803553	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	cgacgacgagctgggcttccGcaagaacgacatcatcacag	11	13	2	1	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	SGSM3-494	NM_015705	exon13	c.G1505A	p.R502H	GCTTCCGCAAGAA	.	35	34	13	0	.	30	0	30	0	0	A	40803553	G	A	40803553	3	1	52	1	0	0	0	0	1	0	0	0	14259	1087	38	1	1551	1	SGSM3	22	40803553	Missense_Mutation	SNP	G	TCGA-OR-A5LJ-01A-11D-A29I-10	2529752	40803553	10501013	644	10960										
EP300	2033	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr22	41572252	41572254	+	In_Frame_Del	DEL	TCT	TCT	-													0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	gagactgtctgtttttcaggTcttctttgtgatccgcctca					novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	TCT	TCT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	EP300-2011	NM_001429	exon30	c.4781_4783del	p.1594_1595del	TTCAGGTCTTCTT	.	59	41	98	0	.	0	0	0	0	0	-	41572254	TCT	-	41572252	7	5	52	1	0	1	0	1	0	0	0	0	5161	1681	58	0	4899	0	EP300	22	41572252	In_Frame_Del	DEL	TCT	TCGA-OR-A5LJ-01A-11D-A29I-10	768699	41572252	9732314	645	10961										
TOB2	10766	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr22	41832698	41832698	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	ggtgggtgagcgggccatgcGaggctgctgtggtggctgct	21	8	0	1	rs139245662	byfrequency	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	TOB2-227	NM_016272	exon2	c.C652T	p.R218C	CCATGCGAGGCTG	.	103	82	93	1	G|1.000;A|0.000	6	0	6	0	0	A	41832698	G	A	41832698	3	1	52	1	0	0	0	0	1	0	0	0	16385	1058	37	1	386	1	TOB2	22	41832698	Missense_Mutation	SNP	G	TCGA-OR-A5LJ-01A-11D-A29I-10	260446	41832698	9471868	646	10962										
PKDREJ	10343	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr22	46653903	46653903	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	tgttggattcaggtcattgtGtaacaaaggcaacagcacgc	11	8	2	0	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	PKDREJ-156	NM_006071	exon1	c.C5317T	p.H1773Y	CATTGTGTAACAA	.	97	20	136	2	.	2	2	0	0	0	A	46653903	G	A	46653903	3	1	52	1	0	0	0	0	1	0	0	0	11999	1377	48	3	1448	3	PKDREJ	22	46653903	Missense_Mutation	SNP	G	TCGA-OR-A5LJ-01A-11D-A29I-10	4821205	46653903	4650663	647	10963										
CELSR1	9620	broad.mit.edu	37	chr22	46835126	46835126	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	gaagcgctgtctcaggccccGgaaggtgacgaaggactggg	17	10	1	1	rs150197128		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	CELSR1-525	NM_014246	exon3	c.C4366T	p.R1456W	GGCCCCGGAAGGT	.	140	4	198	1	G|1.000;A|0.000	0	0	0	0	0	A	46835126	G	A	46835126	3	1	52	1	0	0	0	0	1	0	0	0	3227	1115	39	1	4810	1	CELSR1	22	46835126	Missense_Mutation	SNP	G	TCGA-OR-A5LJ-01A-11D-A29I-10	181223	46835126	4469440	648	10964										
SBF1	6305	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr22	50899065	50899065	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	ccctgatgtccggcgggtacCgcagcttatgcagctgctta	12	13	0	1	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	SBF1-90	NM_002972	exon24	c.G3044A	p.R1015Q	GGGTACCGCAGCT	.	87	67	167	1	.	12	0	12	0	0	T	50899065	C	T	50899065	3	4	52	1	0	0	0	0	1	0	0	0	13893	652	23	1	2709	1	SBF1	22	50899065	Missense_Mutation	SNP	C	TCGA-OR-A5LJ-01A-11D-A29I-10	4063939	50899065	405501	649	10965										
ASMTL	8623	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	1546767	1546767	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	cttctcatcgcggctgcccgCgtccctctgagtgggctccg	12	17	2	1	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	ASMTL-62	NM_004192	exon7	c.G757A	p.A253T	TGCCCGCGTCCCT	.	98	82	25	0	.	55	3	52	0	0	T	1546767	C	T	1546767	3	4	52	1	0	0	0	0	1	0	0	0	1047	768	27	1	1136	1	ASMTL	23	1546767	Missense_Mutation	SNP	C	TCGA-OR-A5LJ-01A-11D-A29I-10		1546767	153723793	650	10966										
PNPLA4	8228	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	7890071	7890071	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	cgggccatgaagtcataaccGggcgttactgccccgaaaga	12	12	1	2	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	PNPLA4-130	NM_004650	exon3	c.C249T	p.P83P	ATAACCGGGCGTT	.	242	202	263	1	.	37	1	36	0	0	A	7890071	G	A	7890071	2	1	52	1	0	0	0	0	0	0	0	1	12196	1103	39	1		1	PNPLA4	23	7890071	Silent	SNP	G	TCGA-OR-A5LJ-01A-11D-A29I-10	6343304	7890071	147380489	651	10967										
KAL1	3730	broad.mit.edu;bcgsc.ca	37	chrX	8538724	8538724	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	tggccagccggaggttagccGgtgctggtggggcagatgga	20	8	0	1	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	KAL1-134	NM_000216	exon7	c.C878T	p.P293L	TTAGCCGGTGCTG	.	237	9	321	0	.	0	0	0	0	0	A	8538724	G	A	8538724	3	1	52	1	0	0	0	0	1	0	0	0	7995	1116	39	1	1196	1	KAL1	23	8538724	Missense_Mutation	SNP	G	TCGA-OR-A5LJ-01A-11D-A29I-10	648653	8538724	146731836	652	10968										
KAL1	3730	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	8553424	8553424	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	ttatgtcagtcagttgaactCgctcgtctgtggtctgaggg	13	8	4	2	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	KAL1-134	NM_000216	exon6	c.G740A	p.R247Q	TGAACTCGCTCGT	.	144	112	164	2	.	0	0	0	0	0	T	8553424	C	T	8553424	3	4	52	1	0	0	0	0	1	0	0	0	7995	884	31	1	1338	1	KAL1	23	8553424	Missense_Mutation	SNP	C	TCGA-OR-A5LJ-01A-11D-A29I-10	14700	8553424	146717136	653	10969										
MAP3K15	389840	broad.mit.edu	37	chrX	19390842	19390842	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	gaggattttgtacaggatggCacggcgctcactgtccttgc	13	10	1	0	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	MAP3K15-335	NM_001001671	exon22	c.G3037A	p.A1013T	GGATGGCACGGCG	.	229	6	323	0	.	19	18	1	0	0	T	19390842	C	T	19390842	3	4	52	1	0	0	0	0	1	0	0	0	9277	710	25	3	936	3	MAP3K15	23	19390842	Missense_Mutation	SNP	C	TCGA-OR-A5LJ-01A-11D-A29I-10	10837418	19390842	135879718	654	10970										
MAGEB1	4112	broad.mit.edu	37	chrX	30268991	30268991	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	cgtaagtataaaatgagagaGcccattatgaaggcagatat	10	5	0	4	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	MAGEB1-130	NM_177415	exon3	c.G381A	p.E127E	GAGAGAGCCCATT	.	141	4	189	0	.	0	0	0	0	0	A	30268991	G	A	30268991	2	1	52	1	0	0	0	0	0	0	0	1	9200	962	34	3		3	MAGEB1	23	30268991	Silent	SNP	G	TCGA-OR-A5LJ-01A-11D-A29I-10	10878149	30268991	125001569	655	10971										
TSPAN7	7102	hgsc.bcm.edu;bcgsc.ca	37	chrX	38535027	38535027	+	Frame_Shift_Del	DEL	C	C	-													0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	tacttcctggagcatggcatCccccccagctgctgcatgaa					novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	TSPAN7-63	NM_004615	exon5	c.510delC	p.I170fs	TGGCATCCCCCCC	.	170	136	206	1	.	0	0	0	0	0	-	38535027	C	-	38535027	7	5	52	1	0	1	0	1	0	0	0	0	16690	845	30	0	528	0	TSPAN7	23	38535027	Frame_Shift_Del	DEL	C	TCGA-OR-A5LJ-01A-11D-A29I-10	8266036	38535027	116735533	656	10972										
MED14	9282	broad.mit.edu;bcgsc.ca	37	chrX	40518765	40518765	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	gtgtcacttttagctgaagcGtttggttggttttgggacta	13	5	1	1	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	MED14-289	NM_004229	exon27	c.C3779T	p.T1260M	TGAAGCGTTTGGT	.	109	5	109	0	.	32	28	4	0	0	A	40518765	G	A	40518765	3	1	52	1	0	0	0	0	1	0	0	0	9460	1145	40	1	605	1	MED14	23	40518765	Missense_Mutation	SNP	G	TCGA-OR-A5LJ-01A-11D-A29I-10	1983738	40518765	114751795	657	10973										
USP9X	8239	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chrX	41075161	41075161	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	gtttattttaggttgataccGtaaagcgcttgctgattaaa	9	5	0	2	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	USP9X-563	NM_001039591	exon35	c.G5341A	p.V1781I	GATACCGTAAAGC	.	119	9	143	0	.	1	1	0	0	0	A	41075161	G	A	41075161	3	1	52	1	0	0	0	0	1	0	0	0	17128	1145	40	1	5475	1	USP9X	23	41075161	Missense_Mutation	SNP	G	TCGA-OR-A5LJ-01A-11D-A29I-10	556396	41075161	114195399	658	10974										
SSX5	6758	ucsc.edu;bcgsc.ca	37	chrX	48053647	48053647	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	ttacgcatgaaaggtgggagGgtggccttgaaacctagaaa	14	6	0	3	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	SSX5-90	NM_021015	exon5	c.C321A	p.T107T	TGGGAGGGTGGCC	.	786	631	1273	4	.	0	0	0	0	0	T	48053647	G	T	48053647	2	4	52	1	0	0	0	0	0	0	0	1	15245	1219	43	3		3	SSX5	23	48053647	Silent	SNP	G	TCGA-OR-A5LJ-01A-11D-A29I-10	6978486	48053647	107216913	659	10975										
KCND1	3750	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	48826543	48826543	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	ctcaaagcgccgtccgctcaCgttcaccaccagaacctcat	6	18	4	1	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	KCND1-133	NM_004979	exon1	c.G136A	p.V46M	CGCTCACGTTCAC	.	126	109	225	1	.	2	0	2	0	0	T	48826543	C	T	48826543	3	4	52	1	0	0	0	0	1	0	0	0	8039	536	19	1	1831	1	KCND1	23	48826543	Missense_Mutation	SNP	C	TCGA-OR-A5LJ-01A-11D-A29I-10	772896	48826543	106444017	660	10976										
SHROOM4	57477	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chrX	50350688	50350690	+	In_Frame_Del	DEL	CCT	CCT	-													0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	ctcctcttcctcctcctctgCctcctcctcctcctcttcct					rs143151534	alternate_allele	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	CCT	CCT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	SHROOM4-131	NM_020717	exon6	c.3452_3454del	p.1151_1152del	CCTCTGCCTCCTC	.	92	65	106	0	-|0.701;TCC|0.299	0	0	0	0	0	-	50350690	CCT	-	50350688	7	5	52	1	0	1	0	1	0	0	0	0	14331	739	26	0	1043	0	SHROOM4	23	50350688	In_Frame_Del	DEL	CCT	TCGA-OR-A5LJ-01A-11D-A29I-10	1524145	50350688	104919872	661	10977										
HEPH	9843	broad.mit.edu;bcgsc.ca	37	chrX	65486456	65486456	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	acatcgacagagaaagctacGacgcaataggaggtccatcc	10	11	0	1	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	HEPH-135	NM_138737	exon21	c.G3581A	p.R1194Q	AGCTACGACGCAA	.	240	10	327	0	.	1	1	0	0	0	A	65486456	G	A	65486456	3	1	52	1	0	0	0	0	1	0	0	0	7075	1058	37	1	3663	1	HEPH	23	65486456	Missense_Mutation	SNP	G	TCGA-OR-A5LJ-01A-11D-A29I-10	15135768	65486456	89784104	662	10978										
TEX11	56159	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	69774510	69774510	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	atagctcttacttgcaattgTttcaaaagttttagtttcta	5	6	3	0	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	TEX11-178	NM_001003811	exon27	c.A2326G	p.T776A	CAATTGTTTCAAA	.	161	32	246	0	.	0	0	0	0	0	C	69774510	T	C	69774510	3	2	52	1	0	0	0	0	1	0	0	0	15811	1725	60	4	516	4	TEX11	23	69774510	Missense_Mutation	SNP	T	TCGA-OR-A5LJ-01A-11D-A29I-10	4288054	69774510	85496050	663	10979										
MED12	9968	ucsc.edu;bcgsc.ca	37	chrX	70356163	70356163	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	tccaccaaacagaagatctcGccctgggatctttttgaggg	10	11	2	3	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	MED12-272	NM_005120	exon37	c.G5058A	p.S1686S	GATCTCGCCCTGG	.	175	143	239	2	.	45	0	45	0	0	A	70356163	G	A	70356163	2	1	52	1	0	0	0	0	0	0	0	1	9456	1074	38	1		1	MED12	23	70356163	Silent	SNP	G	TCGA-OR-A5LJ-01A-11D-A29I-10	581653	70356163	84914397	664	10980										
CXCR3	2833	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chrX	70836820	70836820	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	agccaggcaggtgagggtcaCgcgggccgggggcccccggc	20	14	1	1	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	CXCR3-660	NM_001142797	exon2	c.G643A	p.V215M	GGGTCACGCGGGC	.	171	15	198	0	.	6	6	0	0	0	T	70836820	C	T	70836820	3	4	52	1	0	0	0	0	1	0	0	0	4098	536	19	1	608	1	CXCR3	23	70836820	Missense_Mutation	SNP	C	TCGA-OR-A5LJ-01A-11D-A29I-10	480657	70836820	84433740	665	10981										
ZDHHC15	158866	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	74636938	74636938	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	ttaccttggttgtcatcctcGttgtcttcccaggtttcttc	7	12	3	0	rs192529997		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	ZDHHC15-132	NM_144969	exon10	c.C951T	p.N317N	ATCCTCGTTGTCT	.	100	76	200	0	G|0.998;A|0.002	1	0	1	0	0	A	74636938	G	A	74636938	2	1	52	1	0	0	0	0	0	0	0	1	17642	1136	40	1		1	ZDHHC15	23	74636938	Silent	SNP	G	TCGA-OR-A5LJ-01A-11D-A29I-10	3800118	74636938	80633622	666	10982										
ATRX	546	hgsc.bcm.edu	37	chrX	76938582	76938585	+	Frame_Shift_Del	DEL	TGAT	TGAT	-													0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	gaattttgatccacagtctcTgattgcttagattttggcaa					novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	TGAT	TGAT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	ATRX-248	NM_000489	exon9	c.2163_2166del	p.721_722del	AGTCTCTGATTGC	.	28	22	39	2	.	0	0	0	0	0	-	76938585	TGAT	-	76938582	7	5	52	1	0	1	0	1	0	0	0	0	1209	1567	55	0	5420	0	ATRX	23	76938582	Frame_Shift_Del	DEL	TGAT	TCGA-OR-A5LJ-01A-11D-A29I-10	2301644	76938582	78331978	667	10983										
ZNF711	7552	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chrX	84510411	84510413	+	In_Frame_Del	DEL	ATC	ATC	-													0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	aagttgtccatggacctgatAtcatcacagagactgatgta					novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	ATC	ATC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	ZNF711-134	NM_021998	exon4	c.226_228del	p.76_76del	CCTGATATCATCA	.	285	47	396	0	.	0	0	0	0	0	-	84510413	ATC	-	84510411	7	5	52	1	0	1	0	1	0	0	0	0	18153	449	16	0	232	0	ZNF711	23	84510411	In_Frame_Del	DEL	ATC	TCGA-OR-A5LJ-01A-11D-A29I-10	7571829	84510411	70760149	668	10984										
PCDH11X	27328	hgsc.bcm.edu;bcgsc.ca	37	chrX	91132408	91132408	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	aactgtgacggataaggatgCggaccataatggcagggtga	15	6	0	2	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	PCDH11X-193	NM_001168363	exon2	c.C1169T	p.A390V	AGGATGCGGACCA	.	313	261	413	2	.	0	0	0	0	0	T	91132408	C	T	91132408	3	4	52	1	0	0	0	0	1	0	0	0	11537	768	27	1	1175	1	PCDH11X	23	91132408	Missense_Mutation	SNP	C	TCGA-OR-A5LJ-01A-11D-A29I-10	6621997	91132408	64138152	669	10985										
SRPX2	27286	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	99905848	99905848	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	ggaggtcccacaggctcctgCcctggactaccgaggtaatc	12	14	0	0	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	SRPX2-132	NM_014467	exon3	c.C149T	p.A50V	CTCCTGCCCTGGA	.	89	79	118	0	.	0	0	0	0	0	T	99905848	C	T	99905848	3	4	52	1	0	0	0	0	1	0	0	0	15202	739	26	3	155	3	SRPX2	23	99905848	Missense_Mutation	SNP	C	TCGA-OR-A5LJ-01A-11D-A29I-10	8773440	99905848	55364712	670	10986										
RGAG1	57529	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chrX	109695052	109695052	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	gggtgatgtctgcaccaccaGtaagagctttagattctgga	12	8	2	3	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	RGAG1-132	NM_020769	exon3	c.G1207C	p.V403L	CCACCAGTAAGAG	.	98	6	177	0	.	0	0	0	0	0	C	109695052	G	C	109695052	3	2	52	1	0	0	0	0	1	0	0	0	13309	1029	36	3	1209	3	RGAG1	23	109695052	Missense_Mutation	SNP	G	TCGA-OR-A5LJ-01A-11D-A29I-10	9789204	109695052	45575508	671	10987										
SLITRK4	139065	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	142717897	142717897	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	ttttgcagaagcaaggtgccGggcaaggtgttagaggaggc	17	6	0	2	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	SLITRK4-193	NM_001184750	exon2	c.C1028T	p.P343L	GGTGCCGGGCAAG	.	212	177	272	1	.	0	0	0	0	0	A	142717897	G	A	142717897	3	1	52	1	0	0	0	0	1	0	0	0	14780	1116	39	1	1489	1	SLITRK4	23	142717897	Missense_Mutation	SNP	G	TCGA-OR-A5LJ-01A-11D-A29I-10	33022845	142717897	12552663	672	10988										
FMR1NB	158521	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	147090160	147090160	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	cctaaacagatgatgcaaatGtttgggcttggtgcgatcag	12	7	1	2	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	FMR1NB-131	NM_152578	exon4	c.G561T	p.M187I	GCAAATGTTTGGG	.	90	75	129	0	.	0	0	0	0	0	T	147090160	G	T	147090160	3	4	52	1	0	0	0	0	1	0	0	0	5980	1377	48	3	575	3	FMR1NB	23	147090160	Missense_Mutation	SNP	G	TCGA-OR-A5LJ-01A-11D-A29I-10	4372263	147090160	8180400	673	10989										
AFF2	2334	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chrX	147733548	147733548	+	Frame_Shift_Del	DEL	A	A	-													0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	aacaagaccgtagtgcacttAaaaaaagggaatgggagcgg					novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	AFF2-135	NM_002025	exon2	c.76delA	p.K26fs	GCACTTAAAAAAA	.	277	157	315	0	.	0	0	0	0	0	-	147733548	A	-	147733548	7	5	52	1	0	1	0	1	0	0	0	0	357	363	13	0	82	0	AFF2	23	147733548	Frame_Shift_Del	DEL	A	TCGA-OR-A5LJ-01A-11D-A29I-10	643388	147733548	7537012	674	10990										
MAGEA11	4110	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	148797592	148797592	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	agctgaggagcaggaggctgCcttcttctcctctactctga	11	12	4	2	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	MAGEA11-132	NM_005366	exon5	c.C446T	p.A149V	AGGCTGCCTTCTT	.	198	163	301	0	.	0	0	0	0	0	T	148797592	C	T	148797592	3	4	52	1	0	0	0	0	1	0	0	0	9193	739	26	3	473	3	MAGEA11	23	148797592	Missense_Mutation	SNP	C	TCGA-OR-A5LJ-01A-11D-A29I-10	1064044	148797592	6472968	675	10991										
CD99L2	83692	broad.mit.edu	37	chrX	149999704	149999704	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	ttatttgatttactactcacGctttactgaggaagtttctt	6	7	2	2	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	CD99L2-195	NM_001242614	exon2	c.C130T	p.Q44X	ACTCACGCTTTAC	.	25	3	47	0	.	0	0	0	0	0	A	149999704	G	A	149999704	4	1	52	1	0	0	0	0	0	1	0	0	3057	1101	38	1	698	1	CD99L2	23	149999704	Nonsense_Mutation	SNP	G	TCGA-OR-A5LJ-01A-11D-A29I-10	1202112	149999704	5270856	676	10992										
ATP2B3	492	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	152815531	152815531	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	gaaggaaggcgccctcccacGccaggtgggcaataagacgg	15	12	0	1	novel		TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	ATP2B3-109	NM_001001344	exon10	c.G1610A	p.R537H	TCCCACGCCAGGT	.	102	86	151	0	.	25	0	24	1	0	A	152815531	G	A	152815531	3	1	52	1	0	0	0	0	1	0	0	0	1142	1087	38	1	1648	1	ATP2B3	23	152815531	Missense_Mutation	SNP	G	TCGA-OR-A5LJ-01A-11D-A29I-10	2815827	152815531	2455029	677	10993										
GDI1	2664	broad.mit.edu;bcgsc.ca	37	chrX	153669455	153669455	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0192878338278932	13	1	0.274588992137241	2.64987978426149	0.15528214869721	1	1	0	caccacagattgagtgccatCtatggggggacatatatgct	11	9	1	2	rs201655775	alternate_allele	TCGA-OR-A5LJ-01A-11D-A29I-10	TCGA-OR-A5LJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b6c34287-1788-487a-a5e2-0d5e329894ee	096a0d03-997c-4951-9168-94d78bccc493	.	GDI1-90	NM_001493	exon7	c.C732A	p.I244I	TGCCATCTATGGG	.	66	9	125	0	.	6	4	2	0	0	A	153669455	C	A	153669455	2	1	52	1	0	0	0	0	0	0	0	1	6340	903	32	3		3	GDI1	23	153669455	Silent	SNP	C	TCGA-OR-A5LJ-01A-11D-A29I-10	853924	153669455	1601105	678	10994										
NOL9	79707	broad.mit.edu;bcgsc.ca	37	chr1	6610521	6610521	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0333333333333333	4	1	0.632380073800738	0.879833146157548	0.493564935649356	1	1	0	gttccttcttgcttttctcaGgctgtgagtagtgaagtgca	11	8	2	2	novel		TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	de28f978-5783-417f-acac-610329360c22	695b49cf-c521-442f-9074-e9b47b7200c9	.	NOL9-515	NM_024654	exon2	c.C551A	p.P184H	TTCTCAGGCTGTG	.	84	6	128	1	.	1	1	0	0	0	T	6610521	G	T	6610521	3	4	53	1	0	0	0	0	1	0	0	0	10557	1000	35	3	1601	3	NOL9	1	6610521	Missense_Mutation	SNP	G	TCGA-OR-A5LK-01A-11D-A29I-10		6610521	242640100	1	10995										
HNRNPCL1	343069	bcgsc.ca	37	chr1	12907358	12907358	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0333333333333333	4	1	0.632380073800738	0.879833146157548	0.493564935649356	1	1	0	actccagctggtcatcccccTgatcttcattaacatcatca	4	15	5	1	rs74587302		TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	de28f978-5783-417f-acac-610329360c22	695b49cf-c521-442f-9074-e9b47b7200c9	.	HNRNPCL1-68	NM_001013631	exon2	c.A785G	p.Q262R	TCCCCCTGATCTT	.	86	9	91	1	.	0	0	0	0	0	C	12907358	T	C	12907358	3	2	53	1	0	0	0	0	1	0	0	0	7284	1580	55	4	98	4	HNRNPCL1	1	12907358	Missense_Mutation	SNP	T	TCGA-OR-A5LK-01A-11D-A29I-10	6296837	12907358	236343263	2	10996										
ARHGEF19	128272	bcgsc.ca	37	chr1	16534646	16534646	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0333333333333333	4	1	0.632380073800738	0.879833146157548	0.493564935649356	1	1	0	ctgctcttgcactacctggcCaggctctaggaagacagcgt	11	13	2	1	rs221058	byfrequency	TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	de28f978-5783-417f-acac-610329360c22	695b49cf-c521-442f-9074-e9b47b7200c9	.	ARHGEF19-229	NM_153213	exon3	c.G487C	p.G163R	CCTGGCCAGGCTC	.	148	5	164	0	C|0.794;G|0.206	0	0	0	0	0	G	16534646	C	G	16534646	3	3	53	1	0	0	0	0	1	0	0	0	902	594	21	3	1977	3	ARHGEF19	1	16534646	Missense_Mutation	SNP	C	TCGA-OR-A5LK-01A-11D-A29I-10	3627288	16534646	232715975	3	10997										
PLA2G2C	391013	bcgsc.ca	37	chr1	20501582	20501582	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0333333333333333	4	1	0.632380073800738	0.879833146157548	0.493564935649356	1	1	0	atatgagaagaaggcacttcGccccgtgatgtgtttgaccc	11	10	0	4	rs12139100	byfrequency	TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	de28f978-5783-417f-acac-610329360c22	695b49cf-c521-442f-9074-e9b47b7200c9	.	PLA2G2C-68	NM_001105572	exon1	c.C106T	p.R36X	CACTTCGCCCCGT	.	188	9	242	2	G|0.802;A|0.198	0	0	0	0	0	A	20501582	G	A	20501582	4	1	53	1	0	0	0	0	0	1	0	0	12025	1095	38	1	358	1	PLA2G2C	1	20501582	Nonsense_Mutation	SNP	G	TCGA-OR-A5LK-01A-11D-A29I-10	3966936	20501582	228749039	4	10998										
MUL1	79594	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	20828581	20828581	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0333333333333333	4	1	0.632380073800738	0.879833146157548	0.493564935649356	1	1	0	ccaaaggtgggtggttcgatTccacaccatcttgtgctcct	10	12	1	0	novel		TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	de28f978-5783-417f-acac-610329360c22	695b49cf-c521-442f-9074-e9b47b7200c9	.	MUL1-90	NM_024544	exon3	c.A310G	p.N104D	TTCGATTCCACAC	.	130	26	168	0	.	2	1	1	0	0	C	20828581	T	C	20828581	3	2	53	1	0	0	0	0	1	0	0	0	10012	1783	62	4	756	4	MUL1	1	20828581	Missense_Mutation	SNP	T	TCGA-OR-A5LK-01A-11D-A29I-10	326999	20828581	228422040	5	10999										
HSPG2	3339	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	22182300	22182300	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0333333333333333	4	1	0.632380073800738	0.879833146157548	0.493564935649356	1	1	0	ctgtccactcgagggtgggcGtggggctccctgtggcgctg	18	12	0	0	rs151035968	alternate_allele	TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	de28f978-5783-417f-acac-610329360c22	695b49cf-c521-442f-9074-e9b47b7200c9	.	HSPG2-141	NM_005529	exon45	c.C5681T	p.T1894M	GTGGGCGTGGGGC	.	61	42	30	0	G|1.000;T|0.000	0	0	0	0	0	A	22182300	G	A	22182300	3	1	53	1	0	0	0	0	1	0	0	0	7451	1145	40	1	7706	1	HSPG2	1	22182300	Missense_Mutation	SNP	G	TCGA-OR-A5LK-01A-11D-A29I-10	1353719	22182300	227068321	6	11000										
SEPN1	57190	bcgsc.ca	37	chr1	26138262	26138262	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0333333333333333	4	1	0.632380073800738	0.879833146157548	0.493564935649356	1	1	0	atgatcgacagccacctgccTtcaggggagcccctgcagtt	11	14	1	1	rs760597	byfrequency	TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	de28f978-5783-417f-acac-610329360c22	695b49cf-c521-442f-9074-e9b47b7200c9	.	SEPN1-92	.	.	.	.	CCTGCCTTCAGGG	.	338	12	366	3	T|0.001;G|0.786;C|0.007;A|0.206	5	5	0	0	0	C	26138262	T	C	26138262	2	2	53	1	0	0	0	0	0	0	0	1	14091	1596	56	4		4	SEPN1	1	26138262	Silent	SNP	T	TCGA-OR-A5LK-01A-11D-A29I-10	3955962	26138262	223112359	7	11001										
CSF1	1435	bcgsc.ca	37	chr1	110466338	110466338	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0333333333333333	4	1	0.632380073800738	0.879833146157548	0.493564935649356	1	1	0	ccggcagatgtaactggtacCgccttgcccagggtgggccc	14	14	0	1	rs333970	byfrequency	TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	de28f978-5783-417f-acac-610329360c22	695b49cf-c521-442f-9074-e9b47b7200c9	.	CSF1-91	NM_000757	exon6	c.C1095A	p.T365T	TGGTACCGCCTTG	.	126	5	160	0	C|0.554;A|0.446	4	4	0	0	0	A	110466338	C	A	110466338	2	1	53	1	0	0	0	0	0	0	0	1	3937	639	23	2		2	CSF1	1	110466338	Silent	SNP	C	TCGA-OR-A5LK-01A-11D-A29I-10	84328076	110466338	138784283	8	11002										
KCNN3	3782	broad.mit.edu	37	chr1	154842199	154842200	+	In_Frame_Ins	INS	-	-	GCTGCTGCT													0.0333333333333333	4	1	0.632380073800738	0.879833146157548	0.493564935649356	1	1	0	ctgagacaggggatgcggtgINSgctgctgctgctgctgctgc					rs3831942	alternate_allele	TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	de28f978-5783-417f-acac-610329360c22	695b49cf-c521-442f-9074-e9b47b7200c9	.	KCNN3-91	NM_001204087	exon1	c.242_243insAGCAGCAGC	p.P81delinsQQQP	TGCGGTGGCTGCT	.	65	14	17	0	.	0	0	0	0	0	GCTGCTGCT	154842200	-	GCTGCTGCT	154842199	7	5	53	1	0	1	1	0	0	0	0	0	8101	1348	47	0	2007	0	KCNN3	1	154842199	In_Frame_Ins	INS	-	TCGA-OR-A5LK-01A-11D-A29I-10	44375861	154842199	94408422	9	11003										
HSPA6	3310	bcgsc.ca	37	chr1	161495885	161495885	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0333333333333333	4	1	0.632380073800738	0.879833146157548	0.493564935649356	1	1	0	gtcccccagatagaggtgacTtttgacattgatgctaatgg	11	8	0	5	rs404508	byfrequency	TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	de28f978-5783-417f-acac-610329360c22	695b49cf-c521-442f-9074-e9b47b7200c9	.	HSPA6-226	NM_002155	exon1	c.T1437C	p.T479T	GGTGACTTTTGAC	.	331	9	452	2	T|0.179;G|0.216;C|0.555;A|0.050	16	2	0	0	14	C	161495885	T	C	161495885	2	2	53	1	0	0	0	0	0	0	0	1	7436	1596	56	4		4	HSPA6	1	161495885	Silent	SNP	T	TCGA-OR-A5LK-01A-11D-A29I-10	6653686	161495885	87754736	10	11004										
TNR	7143	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	175365862	175365862	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0333333333333333	4	1	0.632380073800738	0.879833146157548	0.493564935649356	1	1	0	ggtaagagatcacatattccGtcactgccatcggcccgtcc	9	14	2	1	rs138654492		TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	de28f978-5783-417f-acac-610329360c22	695b49cf-c521-442f-9074-e9b47b7200c9	.	TNR-324	NM_003285	exon5	c.C1058T	p.T353M	TATTCCGTCACTG	.	100	13	110	0	G|1.000;A|0.000	0	0	0	0	0	A	175365862	G	A	175365862	3	1	53	1	0	0	0	0	1	0	0	0	16375	1145	40	1	3094	1	TNR	1	175365862	Missense_Mutation	SNP	G	TCGA-OR-A5LK-01A-11D-A29I-10	13869977	175365862	73884759	11	11005										
HMCN1	83872	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	186092228	186092228	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0333333333333333	4	1	0.632380073800738	0.879833146157548	0.493564935649356	1	1	0	attgtggaatctatccgccaGcgcgtcctcagctctggctc	10	14	3	0	novel		TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	de28f978-5783-417f-acac-610329360c22	695b49cf-c521-442f-9074-e9b47b7200c9	.	HMCN1-113	NM_031935	exon81	c.G12375C	p.Q4125H	CCGCCAGCGCGTC	.	103	33	153	0	.	0	0	0	0	0	C	186092228	G	C	186092228	3	2	53	1	0	0	0	0	1	0	0	0	7241	962	34	3	12697	3	HMCN1	1	186092228	Missense_Mutation	SNP	G	TCGA-OR-A5LK-01A-11D-A29I-10	10726366	186092228	63158393	12	11006										
OR2T12	127064	bcgsc.ca	37	chr1	248457979	248457979	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0333333333333333	4	1	0.632380073800738	0.879833146157548	0.493564935649356	1	1	0	ttacacacgtccccagccacCgtttcagggcttccttgacc	7	17	1	1	rs6667171	byfrequency	TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	de28f978-5783-417f-acac-610329360c22	695b49cf-c521-442f-9074-e9b47b7200c9	.	OR2T12-71	NM_001004692	exon1	c.G902T	p.R301L	AGCCACCGTTTCA	.	252	7	270	3	C|0.242;A|0.758	0	0	0	0	0	A	248457979	C	A	248457979	3	1	53	1	0	0	0	0	1	0	0	0	11048	652	23	2	63	2	OR2T12	1	248457979	Missense_Mutation	SNP	C	TCGA-OR-A5LK-01A-11D-A29I-10	62365751	248457979	792642	13	11007										
OR2M7	391196	bcgsc.ca	37	chr1	248487638	248487638	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0333333333333333	4	1	0.632380073800738	0.879833146157548	0.493564935649356	1	1	0	agttgaaggccatcttgggtAcagtggtgcagatgagcatg	15	6	1	3	rs7555310	byfrequency	TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	de28f978-5783-417f-acac-610329360c22	695b49cf-c521-442f-9074-e9b47b7200c9	.	OR2M7-70	NM_001004691	exon1	c.T233C	p.V78A	TTGGGTACAGTGG	.	216	9	290	1	A|0.247;G|0.753	0	0	0	0	0	G	248487638	A	G	248487638	3	3	53	1	0	0	0	0	1	0	0	0	11043	391	14	4	708	4	OR2M7	1	248487638	Missense_Mutation	SNP	A	TCGA-OR-A5LK-01A-11D-A29I-10	29659	248487638	762983	14	11008										
PLB1	151056	bcgsc.ca	37	chr2	28827533	28827533	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0333333333333333	4	1	0.632380073800738	0.879833146157548	0.493564935649356	1	1	0	tgtccccagagcagcatgcgCgagctggtggggtcaggccg	17	12	1	1	rs146023795	byfrequency	TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	de28f978-5783-417f-acac-610329360c22	695b49cf-c521-442f-9074-e9b47b7200c9	.	PLB1-141	NM_153021	exon41	c.C2868T	p.R956R	CATGCGCGAGCTG	.	119	6	171	0	C|0.993;T|0.007	0	0	0	0	0	T	28827533	C	T	28827533	2	4	53	1	0	0	0	0	0	0	0	1	12053	755	27	1		1	PLB1	2	28827533	Silent	SNP	C	TCGA-OR-A5LK-01A-11D-A29I-10		28827533	214371840	15	11009										
ADD2	119	broad.mit.edu	37	chr2	70918047	70918047	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0333333333333333	4	1	0.632380073800738	0.879833146157548	0.493564935649356	1	1	0	gagacaggcaggaggccccaCttcatggccgacaccttaga	12	13	1	2	novel		TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	de28f978-5783-417f-acac-610329360c22	695b49cf-c521-442f-9074-e9b47b7200c9	.	ADD2-93	NM_001185055	exon7	c.G768T	p.K256N	GCCCCACTTCATG	.	109	4	109	0	.	0	0	0	0	0	A	70918047	C	A	70918047	3	1	53	1	0	0	0	0	1	0	0	0	305	564	20	3	1673	3	ADD2	2	70918047	Missense_Mutation	SNP	C	TCGA-OR-A5LK-01A-11D-A29I-10	42090514	70918047	172281326	16	11010										
SLC4A10	57282	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	162820668	162820668	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0333333333333333	4	1	0.632380073800738	0.879833146157548	0.493564935649356	1	1	0	tttgataggataaagctcttCtggatgccggcaaaacatca	9	8	3	1	novel		TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	de28f978-5783-417f-acac-610329360c22	695b49cf-c521-442f-9074-e9b47b7200c9	.	SLC4A10-229	NM_001178015	exon22	c.C2886T	p.F962F	GCTCTTCTGGATG	.	33	7	42	0	.	0	0	0	0	0	T	162820668	C	T	162820668	2	4	53	1	0	0	0	0	0	0	0	1	14686	912	32	3		3	SLC4A10	2	162820668	Silent	SNP	C	TCGA-OR-A5LK-01A-11D-A29I-10	91902621	162820668	80378705	17	11011										
XIRP1	165904	bcgsc.ca	37	chr3	39230386	39230386	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0333333333333333	4	1	0.632380073800738	0.879833146157548	0.493564935649356	1	1	0	taccctgcacatctccgctgGctgcaggctccctcacagtg	9	17	2	0	novel		TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	de28f978-5783-417f-acac-610329360c22	695b49cf-c521-442f-9074-e9b47b7200c9	.	XIRP1-158	NM_001198621	exon2	c.C551A	p.A184D	CCGCTGGCTGCAG	.	73	4	53	0	.	0	0	0	0	0	T	39230386	G	T	39230386	3	4	53	1	0	0	0	0	1	0	0	0	17467	1203	42	3	4984	3	XIRP1	3	39230386	Missense_Mutation	SNP	G	TCGA-OR-A5LK-01A-11D-A29I-10		39230386	158792044	18	11012										
LRIG1	26018	hgsc.bcm.edu	37	chr3	66550762	66550762	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0333333333333333	4	1	0.632380073800738	0.879833146157548	0.493564935649356	1	1	0	cggctccagccgaagcaaaaGcagccagagaaggagaaggc	14	11	0	2	rs1403626	byfrequency	TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	de28f978-5783-417f-acac-610329360c22	695b49cf-c521-442f-9074-e9b47b7200c9	.	LRIG1-230	NM_015541	exon1	c.C70G	p.L24V	GCAAAAGCAGCCA	.	6	6	0	0	G|0.252;C|0.748	0	0	0	0	0	C	66550762	G	C	66550762	3	2	53	1	0	0	0	0	1	0	0	0	8971	971	34	3	3287	3	LRIG1	3	66550762	Missense_Mutation	SNP	G	TCGA-OR-A5LK-01A-11D-A29I-10	27320376	66550762	131471668	19	11013										
OR5H14	403273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	97869140	97869140	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0333333333333333	4	1	0.632380073800738	0.879833146157548	0.493564935649356	1	1	0	aatagcttcattcacaaaaaTgttcaaaagaaatgatgttt	5	5	3	2	novel		TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	de28f978-5783-417f-acac-610329360c22	695b49cf-c521-442f-9074-e9b47b7200c9	.	OR5H14-91	NM_001005514	exon1	c.T911C	p.M304T	CAAAAATGTTCAA	.	214	19	154	0	.	0	0	0	0	0	C	97869140	T	C	97869140	3	2	53	1	0	0	0	0	1	0	0	0	11189	1464	51	4	913	4	OR5H14	3	97869140	Missense_Mutation	SNP	T	TCGA-OR-A5LK-01A-11D-A29I-10	31318378	97869140	100153290	20	11014										
SEMA5B	54437	hgsc.bcm.edu	37	chr3	122631896	122631896	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0333333333333333	4	1	0.632380073800738	0.879833146157548	0.493564935649356	1	1	0	tgctcccgctgcgcaggaggAcctccaccagggctgcggag	15	15	0	0	rs2276782	byfrequency	TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	de28f978-5783-417f-acac-610329360c22	695b49cf-c521-442f-9074-e9b47b7200c9	.	SEMA5B-157	NM_001256347	exon18	c.T2681A	p.V894D	AGGAGGACCTCCA	.	6	5	0	0	T|0.412;A|0.588	0	0	0	0	0	T	122631896	A	T	122631896	3	4	53	1	0	0	0	0	1	0	0	0	14073	275	10	5	960	5	SEMA5B	3	122631896	Missense_Mutation	SNP	A	TCGA-OR-A5LK-01A-11D-A29I-10	24762756	122631896	75390534	21	11015										
TRIM42	287015	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr3	140401765	140401765	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0333333333333333	4	1	0.632380073800738	0.879833146157548	0.493564935649356	1	1	0	ctgcctcaaggccttccactCggatgtggccatgcaagacc	10	15	1	1	novel		TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	de28f978-5783-417f-acac-610329360c22	695b49cf-c521-442f-9074-e9b47b7200c9	.	TRIM42-227	NM_152616	exon2	c.C803T	p.S268L	TCCACTCGGATGT	.	244	16	157	0	.	0	0	0	0	0	T	140401765	C	T	140401765	3	4	53	1	0	0	0	0	1	0	0	0	16555	893	31	1	809	1	TRIM42	3	140401765	Missense_Mutation	SNP	C	TCGA-OR-A5LK-01A-11D-A29I-10	17769869	140401765	57620665	22	11016										
SHOX2	6474	hgsc.bcm.edu	37	chr3	157823581	157823582	+	In_Frame_Ins	INS	-	-	CACCTCCTC													0.0333333333333333	4	1	0.632380073800738	0.879833146157548	0.493564935649356	1	1	0	gcctgctcctcctcctcctaINScacctcctccgcctcctccg					novel		TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	de28f978-5783-417f-acac-610329360c22	695b49cf-c521-442f-9074-e9b47b7200c9	.	SHOX2-90	NM_001163678	exon1	c.233_234insGAGGAGGTG	p.V78delinsGGGV	CCTCCTACACCTC	.	56	14	10	0	.	0	0	0	0	0	CACCTCCTC	157823582	-	CACCTCCTC	157823581	7	5	53	1	0	1	1	0	0	0	0	0	14324	391	14	0	858	0	SHOX2	3	157823581	In_Frame_Ins	INS	-	TCGA-OR-A5LK-01A-11D-A29I-10	17421816	157823581	40198849	23	11017										
PIK3CA	5290	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	178952085	178952085	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0333333333333333	4	1	0.632380073800738	0.879833146157548	0.493564935649356	1	1	0	gaaacaaatgaatgatgcacAtcatggtggctggacaacaa	10	7	1	2	rs121913279	bycluster	TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	de28f978-5783-417f-acac-610329360c22	695b49cf-c521-442f-9074-e9b47b7200c9	.	PIK3CA-27752	NM_006218	exon21	c.A3140G	p.H1047R	ATGCACATCATGG	.	179	38	156	0	.	6	6	0	0	0	G	178952085	A	G	178952085	3	3	53	1	0	0	0	0	1	0	0	0	11942	217	8	4	3218	4	PIK3CA	3	178952085	Missense_Mutation	SNP	A	TCGA-OR-A5LK-01A-11D-A29I-10	21128504	178952085	19070345	24	11018										
IDUA	3425	broad.mit.edu	37	chr4	996204	996204	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0333333333333333	4	1	0.632380073800738	0.879833146157548	0.493564935649356	1	1	0	cgcgcttccaggtcaacaacAcccgcccgccgcacgtgcag	10	19	1	0	novel		TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	de28f978-5783-417f-acac-610329360c22	695b49cf-c521-442f-9074-e9b47b7200c9	.	IDUA-91	NM_000203	exon8	c.A1120C	p.T374P	AACAACACCCGCC	.	236	96	29	1	.	4	4	0	0	0	C	996204	A	C	996204	3	2	53	1	0	0	0	0	1	0	0	0	7525	159	6	5	1150	5	IDUA	4	996204	Missense_Mutation	SNP	A	TCGA-OR-A5LK-01A-11D-A29I-10		996204	190158072	25	11019										
CRIPAK	285464	hgsc.bcm.edu	37	chr4	1388974	1388974	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0333333333333333	4	1	0.632380073800738	0.879833146157548	0.493564935649356	1	1	0	cgcctgctcacacgtgccgaTgcggagtgcccgcctgctca	12	17	2	0	rs71614969	bycluster	TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	de28f978-5783-417f-acac-610329360c22	695b49cf-c521-442f-9074-e9b47b7200c9	.	CRIPAK-90	NM_175918	exon1	c.T675C	p.D225D	TGCCGATGCGGAG	.	10	8	0	0	C|1.000;|0.000	6	3	3	0	0	C	1388974	T	C	1388974	2	2	53	1	0	0	0	0	0	0	0	1	3883	1461	51	4		4	CRIPAK	4	1388974	Silent	SNP	T	TCGA-OR-A5LK-01A-11D-A29I-10	392770	1388974	189765302	26	11020										
RBM47	54502	hgsc.bcm.edu	37	chr4	40440854	40440854	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0333333333333333	4	1	0.632380073800738	0.879833146157548	0.493564935649356	1	1	0	acgccctcgggcaccttggcGgaggacccggcggccgagtc	16	16	0	0	rs1052153	byfrequency	TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	de28f978-5783-417f-acac-610329360c22	695b49cf-c521-442f-9074-e9b47b7200c9	.	RBM47-25	NM_001098634	exon4	c.C57G	p.S19S	CTTGGCGGAGGAC	.	4	4	0	0	G|0.794;C|0.206	1	0	1	0	0	C	40440854	G	C	40440854	2	2	53	1	0	0	0	0	0	0	0	1	13176	1103	39	2		2	RBM47	4	40440854	Silent	SNP	G	TCGA-OR-A5LK-01A-11D-A29I-10	39051880	40440854	150713422	27	11021										
PHOX2B	8929	broad.mit.edu	37	chr4	41749416	41749416	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0333333333333333	4	1	0.632380073800738	0.879833146157548	0.493564935649356	1	1	0	cagggccagctcctcccgagTgtagatgtcggggtagtgag	16	10	0	2	novel		TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	de28f978-5783-417f-acac-610329360c22	695b49cf-c521-442f-9074-e9b47b7200c9	.	PHOX2B-1970	NM_003924	exon2	c.A379C	p.T127P	CCCGAGTGTAGAT	.	57	3	53	0	.	0	0	0	0	0	G	41749416	T	G	41749416	3	3	53	1	0	0	0	0	1	0	0	0	11888	1696	59	5	573	5	PHOX2B	4	41749416	Missense_Mutation	SNP	T	TCGA-OR-A5LK-01A-11D-A29I-10	1308562	41749416	149404860	28	11022										
ZAR1	326340	hgsc.bcm.edu	37	chr4	48492434	48492434	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0333333333333333	4	1	0.632380073800738	0.879833146157548	0.493564935649356	1	1	0	gcgggcggcagctggcagcaGcgcggcaggggctgccttcc	19	14	0	0	rs10008444		TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	de28f978-5783-417f-acac-610329360c22	695b49cf-c521-442f-9074-e9b47b7200c9	.	ZAR1-90	NM_175619	exon1	c.G126C	p.Q42H	GCAGCAGCGCGGC	.	9	9	0	0	G|0.025;C|0.975	0	0	0	0	0	C	48492434	G	C	48492434	3	2	53	1	0	0	0	0	1	0	0	0	17553	962	34	3	128	3	ZAR1	4	48492434	Missense_Mutation	SNP	G	TCGA-OR-A5LK-01A-11D-A29I-10	6743018	48492434	142661842	29	11023										
NPFFR2	10886	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	73012700	73012700	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0333333333333333	4	1	0.632380073800738	0.879833146157548	0.493564935649356	1	1	0	tgtgtttaattgcaggttccAgtgtgtggtctaccctttta	10	7	1	0	novel		TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	de28f978-5783-417f-acac-610329360c22	695b49cf-c521-442f-9074-e9b47b7200c9	.	NPFFR2-92	NM_004885	exon4	c.A740G	p.Q247R	GGTTCCAGTGTGT	.	79	14	68	0	.	0	0	0	0	0	G	73012700	A	G	73012700	3	3	53	1	0	0	0	0	1	0	0	0	10607	188	7	4	760	4	NPFFR2	4	73012700	Missense_Mutation	SNP	A	TCGA-OR-A5LK-01A-11D-A29I-10	24520266	73012700	118141576	30	11024										
COQ2	27235	hgsc.bcm.edu	37	chr4	84205872	84205872	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0333333333333333	4	1	0.632380073800738	0.879833146157548	0.493564935649356	1	1	0	cggcagccacgccagtgccaCagcccgcaggccccgcgcga	13	20	0	0	rs6818847	byfrequency	TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	de28f978-5783-417f-acac-610329360c22	695b49cf-c521-442f-9074-e9b47b7200c9	.	COQ2-92	NM_015697	exon1	c.G196T	p.V66L	GTGCCACAGCCCG	.	5	5	0	0	C|0.324;A|0.676	0	0	0	0	0	A	84205872	C	A	84205872	3	1	53	1	0	0	0	0	1	0	0	0	3751	478	17	3	1097	3	COQ2	4	84205872	Missense_Mutation	SNP	C	TCGA-OR-A5LK-01A-11D-A29I-10	11193172	84205872	106948404	31	11025										
GRID2	2895	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	94376818	94376818	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0333333333333333	4	1	0.632380073800738	0.879833146157548	0.493564935649356	1	1	0	ctttcaatttctcagagagcCgacatagggatttctgcttt	8	9	3	1	novel		TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	de28f978-5783-417f-acac-610329360c22	695b49cf-c521-442f-9074-e9b47b7200c9	.	GRID2-159	NM_001510	exon11	c.C1551T	p.A517A	GAGAGCCGACATA	.	149	21	123	0	.	0	0	0	0	0	T	94376818	C	T	94376818	2	4	53	1	0	0	0	0	0	0	0	1	6793	639	23	1		1	GRID2	4	94376818	Silent	SNP	C	TCGA-OR-A5LK-01A-11D-A29I-10	10170946	94376818	96777458	32	11026										
RAPGEF2	9693	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	160275135	160275135	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0333333333333333	4	1	0.632380073800738	0.879833146157548	0.493564935649356	1	1	0	cgtctgtgactacggaagaaAccaagcctgtccccatgcct	9	14	1	2	novel		TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	de28f978-5783-417f-acac-610329360c22	695b49cf-c521-442f-9074-e9b47b7200c9	.	RAPGEF2-637	NM_014247	exon22	c.A4105G	p.T1369A	GAAGAAACCAAGC	.	131	46	86	0	.	3	1	1	1	0	G	160275135	A	G	160275135	3	3	53	1	0	0	0	0	1	0	0	0	13079	43	2	4	4191	4	RAPGEF2	4	160275135	Missense_Mutation	SNP	A	TCGA-OR-A5LK-01A-11D-A29I-10	65898317	160275135	30879141	33	11027										
DNAH5	1767	broad.mit.edu;bcgsc.ca	37	chr5	13845019	13845019	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0333333333333333	4	1	0.632380073800738	0.879833146157548	0.493564935649356	1	1	0	cctgtatagtgtgggagtccGacgcctgccccagaatctct	11	13	1	1	rs146087064		TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	de28f978-5783-417f-acac-610329360c22	695b49cf-c521-442f-9074-e9b47b7200c9	.	DNAH5-182	NM_001369	exon32	c.C5198T	p.S1733L	GAGTCCGACGCCT	.	219	10	155	0	G|1.000;A|0.000	0	0	0	0	0	A	13845019	G	A	13845019	3	1	53	1	0	0	0	0	1	0	0	0	4615	1059	37	1	8868	1	DNAH5	5	13845019	Missense_Mutation	SNP	G	TCGA-OR-A5LK-01A-11D-A29I-10		13845019	167070241	34	11028										
FBN2	2201	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	127863580	127863580	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0333333333333333	4	1	0.632380073800738	0.879833146157548	0.493564935649356	1	1	0	cttacgttgtccacaataagTtccaatatatcctttctggc	5	11	1	0	novel		TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	de28f978-5783-417f-acac-610329360c22	695b49cf-c521-442f-9074-e9b47b7200c9	.	FBN2-146	NM_001999	exon4	c.A517T	p.T173S	AATAAGTTCCAAT	.	172	20	131	0	.	0	0	0	0	0	A	127863580	T	A	127863580	3	1	53	1	0	0	0	0	1	0	0	0	5722	1725	60	5	8469	5	FBN2	5	127863580	Missense_Mutation	SNP	T	TCGA-OR-A5LK-01A-11D-A29I-10	114018561	127863580	53051680	35	11029										
GDF9	2661	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr5	132197395	132197395	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0333333333333333	4	1	0.632380073800738	0.879833146157548	0.493564935649356	1	1	0	tatttggcaggtacacatgaCggtcttggcactgaggagtc	13	8	1	2	novel		TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	de28f978-5783-417f-acac-610329360c22	695b49cf-c521-442f-9074-e9b47b7200c9	.	GDF9-227	NM_005260	exon2	c.G1251A	p.P417P	ACATGACGGTCTT	.	209	13	133	0	.	0	0	0	0	0	T	132197395	C	T	132197395	2	4	53	1	0	0	0	0	0	0	0	1	6339	523	19	1		1	GDF9	5	132197395	Silent	SNP	C	TCGA-OR-A5LK-01A-11D-A29I-10	4333815	132197395	48717865	36	11030										
SEC24A	10802	broad.mit.edu	37	chr5	134022586	134022586	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0333333333333333	4	1	0.632380073800738	0.879833146157548	0.493564935649356	1	1	0	ccagagtttgttagacaatcTggatttgtaagtttctcaat	8	6	2	2	novel		TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	de28f978-5783-417f-acac-610329360c22	695b49cf-c521-442f-9074-e9b47b7200c9	.	SEC24A-68	NM_001252231	exon10	c.T1598A	p.L533Q	ACAATCTGGATTT	.	57	4	29	0	.	0	0	0	0	0	A	134022586	T	A	134022586	3	1	53	1	0	0	0	0	1	0	0	0	14029	1580	55	5	1636	5	SEC24A	5	134022586	Missense_Mutation	SNP	T	TCGA-OR-A5LK-01A-11D-A29I-10	1825191	134022586	46892674	37	11031										
ABLIM3	22885	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	148624490	148624490	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0333333333333333	4	1	0.632380073800738	0.879833146157548	0.493564935649356	1	1	0	aaaacaagtgaagacatcagCcagacctccaagtacagtcc	7	12	1	3	novel		TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	de28f978-5783-417f-acac-610329360c22	695b49cf-c521-442f-9074-e9b47b7200c9	.	ABLIM3-93	NM_014945	exon16	c.C1398G	p.S466R	CATCAGCCAGACC	.	222	81	178	0	.	5	1	4	0	0	G	148624490	C	G	148624490	3	3	53	1	0	0	0	0	1	0	0	0	96	738	26	3	1456	3	ABLIM3	5	148624490	Missense_Mutation	SNP	C	TCGA-OR-A5LK-01A-11D-A29I-10	14601904	148624490	32290770	38	11032										
HLA-B	3106	hgsc.bcm.edu	37	chr6	31323953	31323960	+	Frame_Shift_Del	DEL	CCAGCTTG	CCAGCTTG	-													0.0333333333333333	4	1	0.632380073800738	0.879833146157548	0.493564935649356	1	1	0	gcccctggtaccagcgcgctCcagcttgtccttcccgttct					novel		TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10	CCAGCTTG	CCAGCTTG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	de28f978-5783-417f-acac-610329360c22	695b49cf-c521-442f-9074-e9b47b7200c9	.	HLA-B-90	NM_005514	exon3	c.603_610del	p.201_204del	CGCGCTCCAGCTT	.	85	0	22	0	.	0	0	0	0	0	-	31323960	CCAGCTTG	-	31323953	7	5	53	1	0	1	0	1	0	0	0	0	7217	864	30	0	498	0	HLA-B	6	31323953	Frame_Shift_Del	DEL	CCAGCTTG	TCGA-OR-A5LK-01A-11D-A29I-10		31323953	139791114	39	11033										
EYS	346007	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	65622395	65622395	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0333333333333333	4	1	0.632380073800738	0.879833146157548	0.493564935649356	1	1	0	accttctctacaaatacaatGctgatttgcgtctaccaaag	5	11	2	1	novel		TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	de28f978-5783-417f-acac-610329360c22	695b49cf-c521-442f-9074-e9b47b7200c9	.	EYS-660	NM_001142800	exon16	c.C2623T	p.H875Y	TACAATGCTGATT	.	171	19	165	0	.	0	0	0	0	0	A	65622395	G	A	65622395	3	1	53	1	0	0	0	0	1	0	0	0	5345	1319	46	3	6768	3	EYS	6	65622395	Missense_Mutation	SNP	G	TCGA-OR-A5LK-01A-11D-A29I-10	34298442	65622395	105492672	40	11034										
ROS1	6098	broad.mit.edu	37	chr6	117622297	117622297	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0333333333333333	4	1	0.632380073800738	0.879833146157548	0.493564935649356	1	1	0	cagcactgggtcattaaattCcacctaaatatatggggaaa	8	8	1	0	novel		TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	de28f978-5783-417f-acac-610329360c22	695b49cf-c521-442f-9074-e9b47b7200c9	.	ROS1-1353	NM_002944	exon42	c.G6573A	p.W2191X	TAAATTCCACCTA	.	69	3	52	0	.	0	0	0	0	0	T	117622297	C	T	117622297	4	4	53	1	0	0	0	0	0	1	0	0	13566	856	30	3	478	3	ROS1	6	117622297	Nonsense_Mutation	SNP	C	TCGA-OR-A5LK-01A-11D-A29I-10	51999902	117622297	53492770	41	11035										
MAP3K5	4217	broad.mit.edu;bcgsc.ca	37	chr6	136913613	136913613	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0333333333333333	4	1	0.632380073800738	0.879833146157548	0.493564935649356	1	1	0	attcccttgacatctctttcTccgcaggacttggctcttgt	7	13	3	1	novel		TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	de28f978-5783-417f-acac-610329360c22	695b49cf-c521-442f-9074-e9b47b7200c9	.	MAP3K5-982	NM_005923	exon22	c.A3018G	p.G1006G	TCTTTCTCCGCAG	.	175	7	126	0	.	2	2	0	0	0	C	136913613	T	C	136913613	2	2	53	1	0	0	0	0	0	0	0	1	9281	1538	54	4		4	MAP3K5	6	136913613	Silent	SNP	T	TCGA-OR-A5LK-01A-11D-A29I-10	19291316	136913613	34201454	42	11036										
PPIL4	85313	hgsc.bcm.edu	37	chr6	149862718	149862718	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0333333333333333	4	1	0.632380073800738	0.879833146157548	0.493564935649356	1	1	0	cacagtttcaagaaattcaaGcaggctgaaagaaagtaaat	8	6	2	3	novel		TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	de28f978-5783-417f-acac-610329360c22	695b49cf-c521-442f-9074-e9b47b7200c9	.	PPIL4-90	NM_139126	exon2	c.C75A	p.C25X	ATTCAAGCAGGCT	.	77	4	56	0	.	0	0	0	0	0	T	149862718	G	T	149862718	4	4	53	1	0	0	0	0	0	1	0	0	12361	963	34	3	1451	3	PPIL4	6	149862718	Nonsense_Mutation	SNP	G	TCGA-OR-A5LK-01A-11D-A29I-10	12949105	149862718	21252349	43	11037										
SYNE1	23345	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	152832157	152832157	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0333333333333333	4	1	0.632380073800738	0.879833146157548	0.493564935649356	1	1	0	gcacaatacctggaaatataGaataatggtccacatcaatc	6	9	1	1	novel		TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	de28f978-5783-417f-acac-610329360c22	695b49cf-c521-442f-9074-e9b47b7200c9	.	SYNE1-607	NM_033071	exon7	c.C412A	p.L138I	AATATAGAATAAT	.	190	23	153	0	.	0	0	0	0	0	T	152832157	G	T	152832157	3	4	53	1	0	0	0	0	1	0	0	0	15482	933	33	3	26635	3	SYNE1	6	152832157	Missense_Mutation	SNP	G	TCGA-OR-A5LK-01A-11D-A29I-10	2969439	152832157	18282910	44	11038										
MTRF1L	54516	broad.mit.edu;bcgsc.ca	37	chr6	153315693	153315693	+	Silent	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.0333333333333333	4	1	0.632380073800738	0.879833146157548	0.493564935649356	1	1	0	acagtcatggtgctagtatgGacgcggccttgcttttctgt	12	9	2	0	novel		TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	de28f978-5783-417f-acac-610329360c22	695b49cf-c521-442f-9074-e9b47b7200c9	.	MTRF1L-90	NM_019041	exon4	c.C642G	p.V214V	AGTATGGACGCGG	.	151	6	112	0	.	1	1	0	0	0	C	153315693	G	C	153315693	2	2	53	1	0	0	0	0	0	0	0	1	9988	1161	41	3		3	MTRF1L	6	153315693	Silent	SNP	G	TCGA-OR-A5LK-01A-11D-A29I-10	483536	153315693	17799374	45	11039										
IGF2R	3482	broad.mit.edu;bcgsc.ca	37	chr6	160450598	160450598	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0333333333333333	4	1	0.632380073800738	0.879833146157548	0.493564935649356	1	1	0	ccaggcttgtcctgagttacGtgagggaagaggcaggaaag	16	7	0	3	rs199715599		TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	de28f978-5783-417f-acac-610329360c22	695b49cf-c521-442f-9074-e9b47b7200c9	.	IGF2R-118	NM_000876	exon7	c.G793A	p.V265M	AGTTACGTGAGGG	.	136	6	103	0	.	1	1	0	0	0	A	160450598	G	A	160450598	3	1	53	1	0	0	0	0	1	0	0	0	7597	1145	40	1	819	1	IGF2R	6	160450598	Missense_Mutation	SNP	G	TCGA-OR-A5LK-01A-11D-A29I-10	7134905	160450598	10664469	46	11040										
PRR18	285800	hgsc.bcm.edu	37	chr6	166720806	166720806	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0333333333333333	4	1	0.632380073800738	0.879833146157548	0.493564935649356	1	1	0	cggccccgcgcggcagccgcGgactccacgccgcgcagcca	14	21	0	0	rs911203	byfrequency	TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	de28f978-5783-417f-acac-610329360c22	695b49cf-c521-442f-9074-e9b47b7200c9	.	PRR18-514	NM_175922	exon1	c.C825G	p.S275S	AGCCGCGGACTCC	.	5	4	0	0	G|0.796;C|0.204	0	0	0	0	0	C	166720806	G	C	166720806	2	2	53	1	0	0	0	0	0	0	0	1	12622	1103	39	2		2	PRR18	6	166720806	Silent	SNP	G	TCGA-OR-A5LK-01A-11D-A29I-10	6270208	166720806	4394261	47	11041										
CHN2	1124	bcgsc.ca	37	chr7	29407600	29407600	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0333333333333333	4	1	0.632380073800738	0.879833146157548	0.493564935649356	1	1	0	aagagaatcatttgtcctcgGgaggtcagtgctcagctatt	11	8	3	1	novel		TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	de28f978-5783-417f-acac-610329360c22	695b49cf-c521-442f-9074-e9b47b7200c9	.	CHN2-229	NM_004067	exon3	c.G141T	p.R47R	TCCTCGGGAGGTC	.	60	4	59	0	.	0	0	0	0	0	T	29407600	G	T	29407600	2	4	53	1	0	0	0	0	0	0	0	1	3369	1219	43	3		3	CHN2	7	29407600	Silent	SNP	G	TCGA-OR-A5LK-01A-11D-A29I-10		29407600	129731063	48	11042										
CHN2	1124	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	29519803	29519803	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0333333333333333	4	1	0.632380073800738	0.879833146157548	0.493564935649356	1	1	0	gtctaagcagggcaggaaacGccaagaactgctggccgtag	14	10	1	1	novel		TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	de28f978-5783-417f-acac-610329360c22	695b49cf-c521-442f-9074-e9b47b7200c9	.	CHN2-229	NM_001039936	exon1	c.G77A	p.R26H	GGAAACGCCAAGA	.	307	52	220	0	.	0	0	0	0	0	A	29519803	G	A	29519803	3	1	53	1	0	0	0	0	1	0	0	0	3369	1087	38	1	679	1	CHN2	7	29519803	Missense_Mutation	SNP	G	TCGA-OR-A5LK-01A-11D-A29I-10	112203	29519803	129618860	49	11043										
GARS	2617	hgsc.bcm.edu	37	chr7	30634661	30634661	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0333333333333333	4	1	0.632380073800738	0.879833146157548	0.493564935649356	1	1	0	ccctcagcgcggcctcctgcCccccgatctccttgcccgcc	8	24	2	0	rs1049402	byfrequency	TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	de28f978-5783-417f-acac-610329360c22	695b49cf-c521-442f-9074-e9b47b7200c9	.	GARS-91	NM_002047	exon1	c.C124G	p.P42A	TCCTGCCCCCCGA	.	7	7	0	0	C|0.329;G|0.671	1	0	1	0	0	G	30634661	C	G	30634661	3	3	53	1	0	0	0	0	1	0	0	0	6262	623	22	3	126	3	GARS	7	30634661	Missense_Mutation	SNP	C	TCGA-OR-A5LK-01A-11D-A29I-10	1114858	30634661	128504002	50	11044										
TRRAP	8295	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr7	98581870	98581870	+	Silent	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.0333333333333333	4	1	0.632380073800738	0.879833146157548	0.493564935649356	1	1	0	gctctggatatattaagtcgGattcatactattccaactgt	7	8	2	0	novel		TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	de28f978-5783-417f-acac-610329360c22	695b49cf-c521-442f-9074-e9b47b7200c9	.	TRRAP-923	NM_001244580	exon60	c.G9189C	p.R3063R	AAGTCGGATTCAT	.	204	16	151	0	.	1	1	0	0	0	C	98581870	G	C	98581870	2	2	53	1	0	0	0	0	0	0	0	1	16639	1161	41	3		3	TRRAP	7	98581870	Silent	SNP	G	TCGA-OR-A5LK-01A-11D-A29I-10	67947209	98581870	60556793	51	11045										
PTPRN2	5799	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr7	157333452	157333452	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0333333333333333	4	1	0.632380073800738	0.879833146157548	0.493564935649356	1	1	0	ggcgttcacctcctcagccaCggctgtcagcgcgaactcaa	10	16	4	0	rs138836883		TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	de28f978-5783-417f-acac-610329360c22	695b49cf-c521-442f-9074-e9b47b7200c9	.	PTPRN2-295	NM_002847	exon23	c.G3004A	p.V1002M	CAGCCACGGCTGT	.	267	20	162	0	C|1.000;T|0.000	11	10	1	0	0	T	157333452	C	T	157333452	3	4	53	1	0	0	0	0	1	0	0	0	12843	536	19	1	47	1	PTPRN2	7	157333452	Missense_Mutation	SNP	C	TCGA-OR-A5LK-01A-11D-A29I-10	58751582	157333452	1805211	52	11046										
EBF2	64641	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	25708132	25708132	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0333333333333333	4	1	0.632380073800738	0.879833146157548	0.493564935649356	1	1	0	ctgaatccatttccattgccGctggagcaggcaggtgaagg	13	10	0	2	novel		TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	de28f978-5783-417f-acac-610329360c22	695b49cf-c521-442f-9074-e9b47b7200c9	.	EBF2-26	NM_022659	exon15	c.C1674T	p.S558S	ATTGCCGCTGGAG	.	152	18	209	1	.	1	1	0	0	0	A	25708132	G	A	25708132	2	1	53	1	0	0	0	0	0	0	0	1	4892	1078	38	1		1	EBF2	8	25708132	Silent	SNP	G	TCGA-OR-A5LK-01A-11D-A29I-10		25708132	120655890	53	11047										
ADAM2	2515	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr8	39634610	39634610	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0333333333333333	4	1	0.632380073800738	0.879833146157548	0.493564935649356	1	1	0	tgttaatgtcatcataagtgAtccccatactaaggctcaat	6	9	3	1	novel		TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	de28f978-5783-417f-acac-610329360c22	695b49cf-c521-442f-9074-e9b47b7200c9	.	ADAM2-227	NM_001464	exon11	c.T962A	p.I321N	TAAGTGATCCCCA	.	84	7	80	0	.	1	0	1	0	0	T	39634610	A	T	39634610	3	4	53	1	0	0	0	0	1	0	0	0	241	333	12	5	1285	5	ADAM2	8	39634610	Missense_Mutation	SNP	A	TCGA-OR-A5LK-01A-11D-A29I-10	13926478	39634610	106729412	54	11048										
CHRNB3	1142	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr8	42586825	42586825	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0333333333333333	4	1	0.632380073800738	0.879833146157548	0.493564935649356	1	1	0	tgcagtgctgacggccgcttCgaaggctccctgatgaccaa	12	13	0	3	novel		TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	de28f978-5783-417f-acac-610329360c22	695b49cf-c521-442f-9074-e9b47b7200c9	.	CHRNB3-91	NM_000749	exon5	c.C375A	p.F125L	CCGCTTCGAAGGC	.	106	61	112	0	.	0	0	0	0	0	A	42586825	C	A	42586825	3	1	53	1	0	0	0	0	1	0	0	0	3398	883	31	2	393	2	CHRNB3	8	42586825	Missense_Mutation	SNP	C	TCGA-OR-A5LK-01A-11D-A29I-10	2952215	42586825	103777197	55	11049										
PXDNL	137902	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr8	52321748	52321748	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0333333333333333	4	1	0.632380073800738	0.879833146157548	0.493564935649356	1	1	0	ggcactgtgtggtccaagtcGtgctctagaaaccagcccca	11	13	1	1	novel		TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	de28f978-5783-417f-acac-610329360c22	695b49cf-c521-442f-9074-e9b47b7200c9	.	PXDNL-70	NM_144651	exon17	c.C2436T	p.H812H	CAAGTCGTGCTCT	.	26	5	17	0	.	0	0	0	0	0	A	52321748	G	A	52321748	2	1	53	1	0	0	0	0	0	0	0	1	12883	1136	40	1		1	PXDNL	8	52321748	Silent	SNP	G	TCGA-OR-A5LK-01A-11D-A29I-10	9734923	52321748	94042274	56	11050										
E2F5	1875	hgsc.bcm.edu	37	chr8	86089787	86089787	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0333333333333333	4	1	0.632380073800738	0.879833146157548	0.493564935649356	1	1	0	ccgccgcagctcgggggcgcCgggggcggcagcagcaggca	20	15	0	0	rs12926	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	de28f978-5783-417f-acac-610329360c22	695b49cf-c521-442f-9074-e9b47b7200c9	.	E2F5-415	NM_001083588	exon1	c.C132G	p.A44A	GGGCGCCGGGGGC	.	4	4	0	0	C|0.434;G|0.566	0	0	0	0	0	G	86089787	C	G	86089787	2	3	53	1	0	0	0	0	0	0	0	1	4881	639	23	2		2	E2F5	8	86089787	Silent	SNP	C	TCGA-OR-A5LK-01A-11D-A29I-10	33768039	86089787	60274235	57	11051										
ESRP1	54845	bcgsc.ca	37	chr8	95655596	95655596	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0333333333333333	4	1	0.632380073800738	0.879833146157548	0.493564935649356	1	1	0	tccttctgtctctgtactgaTgggcagcttcatgtcaggca	10	11	4	1	rs72676907	byfrequency	TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	de28f978-5783-417f-acac-610329360c22	695b49cf-c521-442f-9074-e9b47b7200c9	.	ESRP1-94	NM_001122827	exon3	c.T327C	p.D109D	TACTGATGGGCAG	.	157	6	156	0	T|0.887;C|0.113	0	0	0	0	0	C	95655596	T	C	95655596	2	2	53	1	0	0	0	0	0	0	0	1	5271	1461	51	4		4	ESRP1	8	95655596	Silent	SNP	T	TCGA-OR-A5LK-01A-11D-A29I-10	9565809	95655596	50708426	58	11052										
SMARCA2	6595	bcgsc.ca	37	chr9	2191309	2191309	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0333333333333333	4	1	0.632380073800738	0.879833146157548	0.493564935649356	1	1	0	aagctcaataaaaaagatgaCaaaggccgggacaaagggaa	11	6	1	2	rs2296212	byfrequency	TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	de28f978-5783-417f-acac-610329360c22	695b49cf-c521-442f-9074-e9b47b7200c9	.	SMARCA2-653	NM_003070	exon33	c.C4638G	p.D1546E	AGATGACAAAGGC	.	170	6	240	0	C|0.831;G|0.169	3	3	0	0	0	G	2191309	C	G	2191309	3	3	53	1	0	0	0	0	1	0	0	0	14804	477	17	3	4764	3	SMARCA2	9	2191309	Missense_Mutation	SNP	C	TCGA-OR-A5LK-01A-11D-A29I-10		2191309	139022122	59	11053										
KDM4C	23081	bcgsc.ca	37	chr9	7174673	7174673	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0333333333333333	4	1	0.632380073800738	0.879833146157548	0.493564935649356	1	1	0	atgaatatgtggccgaccctGtataccgcacttttttgaag	9	9	0	2	rs913588	byfrequency	TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	de28f978-5783-417f-acac-610329360c22	695b49cf-c521-442f-9074-e9b47b7200c9	.	KDM4C-228	NM_015061	exon22	c.G3115A	p.V1039I	GACCCTGTATACC	.	122	6	169	2	G|0.609;A|0.391	3	3	0	0	0	A	7174673	G	A	7174673	3	1	53	1	0	0	0	0	1	0	0	0	8151	1377	48	3	3439	3	KDM4C	9	7174673	Missense_Mutation	SNP	G	TCGA-OR-A5LK-01A-11D-A29I-10	4983364	7174673	134038758	60	11054										
SYK	6850	bcgsc.ca	37	chr9	93640009	93640009	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0333333333333333	4	1	0.632380073800738	0.879833146157548	0.493564935649356	1	1	0	gaggccgagtcctggatgctGgttatggagatggcagaact	16	7	0	2	rs2290887	byfrequency	TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	de28f978-5783-417f-acac-610329360c22	695b49cf-c521-442f-9074-e9b47b7200c9	.	SYK-1402	NM_003177	exon10	c.G1338A	p.L446L	GATGCTGGTTATG	.	200	7	258	0	G|0.824;A|0.176	0	0	0	0	0	A	93640009	G	A	93640009	2	1	53	1	0	0	0	0	0	0	0	1	15475	1335	47	3		3	SYK	9	93640009	Silent	SNP	G	TCGA-OR-A5LK-01A-11D-A29I-10	86465336	93640009	47573422	61	11055										
AKAP2	11217	hgsc.bcm.edu	37	chr9	112811038	112811038	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0333333333333333	4	1	0.632380073800738	0.879833146157548	0.493564935649356	1	1	0	cccggagtctcctggaccccCggagtctcctggacccccgg	12	19	2	0	rs78923754	byfrequency	TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	de28f978-5783-417f-acac-610329360c22	695b49cf-c521-442f-9074-e9b47b7200c9	.	AKAP2-24	NM_001004065	exon1	c.C59T	p.P20L	GACCCCCGGAGTC	.	10	10	0	0	C|0.917;T|0.083	0	0	0	0	0	T	112811038	C	T	112811038	3	4	53	1	0	0	0	0	1	0	0	0	451	652	23	1	61	1	AKAP2	9	112811038	Missense_Mutation	SNP	C	TCGA-OR-A5LK-01A-11D-A29I-10	19171029	112811038	28402393	62	11056										
PRDM12	59335	bcgsc.ca	37	chr9	133553993	133553993	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0333333333333333	4	1	0.632380073800738	0.879833146157548	0.493564935649356	1	1	0	ctggggatcccaggtgtgccCgggctagaggaggaccagaa	17	10	0	2	rs7021384	byfrequency	TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	de28f978-5783-417f-acac-610329360c22	695b49cf-c521-442f-9074-e9b47b7200c9	.	PRDM12-90	NM_021619	exon4	c.C648T	p.P216P	TGTGCCCGGGCTA	.	168	8	223	1	C|0.650;T|0.350	0	0	0	0	0	T	133553993	C	T	133553993	2	4	53	1	0	0	0	0	0	0	0	1	12485	639	23	1		1	PRDM12	9	133553993	Silent	SNP	C	TCGA-OR-A5LK-01A-11D-A29I-10	20742955	133553993	7659438	63	11057										
PITRM1	10531	hgsc.bcm.edu	37	chr10	3214937	3214937	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0333333333333333	4	1	0.632380073800738	0.879833146157548	0.493564935649356	1	1	0	cagccgcctcagcacacacaGgccctgccgcccgccgcagc	10	22	1	0	novel		TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	de28f978-5783-417f-acac-610329360c22	695b49cf-c521-442f-9074-e9b47b7200c9	.	PITRM1-91	NM_001242309	exon1	c.C35T	p.P12L	CACACAGGCCCTG	.	63	50	2	0	.	0	0	0	0	0	A	3214937	G	A	3214937	3	1	53	1	0	0	0	0	1	0	0	0	11982	991	35	3	3193	3	PITRM1	10	3214937	Missense_Mutation	SNP	G	TCGA-OR-A5LK-01A-11D-A29I-10		3214937	132319810	64	11058										
MYPN	84665	bcgsc.ca	37	chr10	69926334	69926334	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.0333333333333333	4	1	0.632380073800738	0.879833146157548	0.493564935649356	1	1	0	cagaccaggcccgattctttCcaggagaggttcaacggaca	11	12	2	2	rs10823148	byfrequency	TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	de28f978-5783-417f-acac-610329360c22	695b49cf-c521-442f-9074-e9b47b7200c9	.	MYPN-95	NM_032578	exon10	c.C1884G	p.F628L	TTCTTTCCAGGAG	.	95	7	113	1	C|0.625;G|0.374	0	0	0	0	0	G	69926334	C	G	69926334	3	3	53	1	0	0	0	0	1	0	0	0	10126	854	30	3	1918	3	MYPN	10	69926334	Missense_Mutation	SNP	C	TCGA-OR-A5LK-01A-11D-A29I-10	66711397	69926334	65608413	65	11059										
SEC31B	25956	bcgsc.ca	37	chr10	102265847	102265847	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0333333333333333	4	1	0.632380073800738	0.879833146157548	0.493564935649356	1	1	0	ccagctcctacccatcacagAgtacaaactgatccagccgt	6	16	1	2	rs2295774	byfrequency	TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	de28f978-5783-417f-acac-610329360c22	695b49cf-c521-442f-9074-e9b47b7200c9	.	SEC31B-91	NM_015490	exon9	c.T994G	p.S332A	TCACAGAGTACAA	.	146	5	152	0	A|0.836;C|0.164	1	1	0	0	0	C	102265847	A	C	102265847	3	2	53	1	0	0	0	0	1	0	0	0	14034	304	11	5	2617	5	SEC31B	10	102265847	Missense_Mutation	SNP	A	TCGA-OR-A5LK-01A-11D-A29I-10	32339513	102265847	33268900	66	11060										
ATRNL1	26033	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr10	116853707	116853707	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0333333333333333	4	1	0.632380073800738	0.879833146157548	0.493564935649356	1	1	0	tccaagccgtgcgagaggacCggctcctgcttctcgggccg	14	15	1	1	novel		TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	de28f978-5783-417f-acac-610329360c22	695b49cf-c521-442f-9074-e9b47b7200c9	.	ATRNL1-96	NM_207303	exon1	c.C198A	p.T66T	GAGGACCGGCTCC	.	75	30	30	0	.	0	0	0	0	0	A	116853707	C	A	116853707	2	1	53	1	0	0	0	0	0	0	0	1	1208	639	23	2		2	ATRNL1	10	116853707	Silent	SNP	C	TCGA-OR-A5LK-01A-11D-A29I-10	14587860	116853707	18681040	67	11061										
LHPP	64077	hgsc.bcm.edu	37	chr10	126150523	126150523	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0333333333333333	4	1	0.632380073800738	0.879833146157548	0.493564935649356	1	1	0	cagcggcgcgggcggcggcaCggccatcgccggctcggtgg	20	15	0	0	rs75426652		TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	de28f978-5783-417f-acac-610329360c22	695b49cf-c521-442f-9074-e9b47b7200c9	.	LHPP-90	NM_022126	exon1	c.C92A	p.T31K	GCGGCACGGCCAT	.	7	6	0	0	C|0.919;A|0.081	1	0	1	0	0	A	126150523	C	A	126150523	3	1	53	1	0	0	0	0	1	0	0	0	8792	536	19	2	94	2	LHPP	10	126150523	Missense_Mutation	SNP	C	TCGA-OR-A5LK-01A-11D-A29I-10	9296816	126150523	9384224	68	11062										
PWWP2B	170394	hgsc.bcm.edu	37	chr10	134219066	134219066	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0333333333333333	4	1	0.632380073800738	0.879833146157548	0.493564935649356	1	1	0	gtgtaccgggccgagctggtGggggagctgaacgggtacct	19	9	0	1	rs76595411	byfrequency	TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	de28f978-5783-417f-acac-610329360c22	695b49cf-c521-442f-9074-e9b47b7200c9	.	PWWP2B-90	NM_001098637	exon2	c.G1062C	p.V354V	GCTGGTGGGGGAG	.	10	6	0	0	G|0.955;C|0.045	10	0	10	0	0	C	134219066	G	C	134219066	2	2	53	1	0	0	0	0	0	0	0	1	12881	1335	47	3		3	PWWP2B	10	134219066	Silent	SNP	G	TCGA-OR-A5LK-01A-11D-A29I-10	8068543	134219066	1315681	69	11063										
MUC2	4583	broad.mit.edu	37	chr11	1092971	1092971	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0333333333333333	4	1	0.632380073800738	0.879833146157548	0.493564935649356	1	1	0	tacggtgaccccaaccccaaCacccaccggcacacagaccc	6	21	0	2	novel		TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	de28f978-5783-417f-acac-610329360c22	695b49cf-c521-442f-9074-e9b47b7200c9	.	MUC2-90	NM_002457	exon30	c.C4790T	p.T1597I	CCCCAACACCCAC	.	93	7	102	1	.	0	0	0	0	0	T	1092971	C	T	1092971	3	4	53	1	0	0	0	0	1	0	0	0	10003	478	17	3	4908	3	MUC2	11	1092971	Missense_Mutation	SNP	C	TCGA-OR-A5LK-01A-11D-A29I-10		1092971	133913545	70	11064										
SCUBE2	57758	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr11	9101018	9101018	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0333333333333333	4	1	0.632380073800738	0.879833146157548	0.493564935649356	1	1	0	aatattcaaacagtcatggaCacagcctccattgagctcat	6	11	3	1	novel		TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	de28f978-5783-417f-acac-610329360c22	695b49cf-c521-442f-9074-e9b47b7200c9	.	SCUBE2-92	NM_001170690	exon3	c.G295T	p.V99F	CATGGACACAGCC	.	105	9	158	0	.	1	1	0	0	0	A	9101018	C	A	9101018	3	1	53	1	0	0	0	0	1	0	0	0	13980	478	17	3	2875	3	SCUBE2	11	9101018	Missense_Mutation	SNP	C	TCGA-OR-A5LK-01A-11D-A29I-10	8008047	9101018	125905498	71	11065										
ATG2A	23130	hgsc.bcm.edu	37	chr11	64673875	64673880	+	In_Frame_Del	DEL	GCCCTT	GCCCTT	-													0.0333333333333333	4	1	0.632380073800738	0.879833146157548	0.493564935649356	1	1	0	atgtggggtccccggccctgGcccttgcggcccgaggctcc					novel		TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10	GCCCTT	GCCCTT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	de28f978-5783-417f-acac-610329360c22	695b49cf-c521-442f-9074-e9b47b7200c9	.	ATG2A-69	NM_015104	exon21	c.3109_3114del	p.1037_1038del	GCCCTGGCCCTTG	.	33	21	5	1	.	0	0	0	0	0	-	64673880	GCCCTT	-	64673875	7	5	53	1	0	1	0	1	0	0	0	0	1094	1190	42	0	2786	0	ATG2A	11	64673875	In_Frame_Del	DEL	GCCCTT	TCGA-OR-A5LK-01A-11D-A29I-10	55572857	64673875	70332641	72	11066										
CNTN5	53942	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	99942451	99942451	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0333333333333333	4	1	0.632380073800738	0.879833146157548	0.493564935649356	1	1	0	ttacagagtagggttgagatGgttaatggagtattgatgat	14	1	0	4	novel		TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	de28f978-5783-417f-acac-610329360c22	695b49cf-c521-442f-9074-e9b47b7200c9	.	CNTN5-366	NM_001243270	exon11	c.G1314T	p.M438I	TGAGATGGTTAAT	.	84	12	85	0	.	0	0	0	0	0	T	99942451	G	T	99942451	3	4	53	1	0	0	0	0	1	0	0	0	3650	1348	47	3	1352	3	CNTN5	11	99942451	Missense_Mutation	SNP	G	TCGA-OR-A5LK-01A-11D-A29I-10	35268576	99942451	35064065	73	11067										
SORL1	6653	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	121490527	121490527	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0333333333333333	4	1	0.632380073800738	0.879833146157548	0.493564935649356	1	1	0	gtagtgaagatgatcccggaCagcaggcttccaccccgtca	11	13	1	3	novel		TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	de28f978-5783-417f-acac-610329360c22	695b49cf-c521-442f-9074-e9b47b7200c9	.	SORL1-228	NM_003105	exon43	c.C5790G	p.D1930E	CCCGGACAGCAGG	.	147	40	201	0	.	0	0	0	0	0	G	121490527	C	G	121490527	3	3	53	1	0	0	0	0	1	0	0	0	14969	477	17	3	5960	3	SORL1	11	121490527	Missense_Mutation	SNP	C	TCGA-OR-A5LK-01A-11D-A29I-10	21548076	121490527	13515989	74	11068										
OR10S1	219873	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	123848074	123848074	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0333333333333333	4	1	0.632380073800738	0.879833146157548	0.493564935649356	1	1	0	aagctgtacggcacagccctCaaaggagatcaccttcccat	8	14	2	1	novel		TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	de28f978-5783-417f-acac-610329360c22	695b49cf-c521-442f-9074-e9b47b7200c9	.	OR10S1-70	NM_001004474	exon1	c.G325C	p.E109Q	AGCCCTCAAAGGA	.	103	12	140	0	.	0	0	0	0	0	G	123848074	C	G	123848074	3	3	53	1	0	0	0	0	1	0	0	0	10947	835	29	3	674	3	OR10S1	11	123848074	Missense_Mutation	SNP	C	TCGA-OR-A5LK-01A-11D-A29I-10	2357547	123848074	11158442	75	11069										
ABCD2	225	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	40012643	40012643	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0333333333333333	4	1	0.632380073800738	0.879833146157548	0.493564935649356	1	1	0	atacaccacaagtcctgctaGtagggtgggcccaattgggc	12	11	0	0	novel		TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	de28f978-5783-417f-acac-610329360c22	695b49cf-c521-442f-9074-e9b47b7200c9	.	ABCD2-95	NM_005164	exon1	c.C775A	p.L259I	CTGCTAGTAGGGT	.	259	85	192	1	.	0	0	0	0	0	T	40012643	G	T	40012643	3	4	53	1	0	0	0	0	1	0	0	0	61	1020	36	3	1487	3	ABCD2	12	40012643	Missense_Mutation	SNP	G	TCGA-OR-A5LK-01A-11D-A29I-10		40012643	93839252	76	11070										
NDUFA12	55967	bcgsc.ca	37	chr12	95387985	95387985	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0333333333333333	4	1	0.632380073800738	0.879833146157548	0.493564935649356	1	1	0	ttccatccacatcccagaatGtgtttttgccattcatttca	4	12	2	1	rs199506466	alternate_allele	TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	de28f978-5783-417f-acac-610329360c22	695b49cf-c521-442f-9074-e9b47b7200c9	.	NDUFA12-90	NM_018838	exon3	c.C218A	p.T73K	CAGAATGTGTTTT	.	79	5	65	0	G|1.000;A|0.000	160	160	0	0	0	T	95387985	G	T	95387985	3	4	53	1	0	0	0	0	1	0	0	0	10291	1377	48	3	227	3	NDUFA12	12	95387985	Missense_Mutation	SNP	G	TCGA-OR-A5LK-01A-11D-A29I-10	55375342	95387985	38463910	77	11071										
FAM109A	144717	hgsc.bcm.edu	37	chr12	111800603	111800603	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0333333333333333	4	1	0.632380073800738	0.879833146157548	0.493564935649356	1	1	0	cgtggggtgccgaggcccggCggcgaggcggtggtggaggg	25	9	0	0	novel		TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	de28f978-5783-417f-acac-610329360c22	695b49cf-c521-442f-9074-e9b47b7200c9	.	FAM109A-90	NM_001177996	exon4	c.G668A	p.R223H	GCCCGGCGGCGAG	.	21	13	0	0	.	2	2	0	0	0	T	111800603	C	T	111800603	3	4	53	1	0	0	0	0	1	0	0	0	5410	768	27	1	124	1	FAM109A	12	111800603	Missense_Mutation	SNP	C	TCGA-OR-A5LK-01A-11D-A29I-10	16412618	111800603	22051292	78	11072										
TRAFD1	10906	bcgsc.ca	37	chr12	112590550	112590550	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0333333333333333	4	1	0.632380073800738	0.879833146157548	0.493564935649356	1	1	0	gttcaccaggcaaagccttcCaagcaacagggagctgggga	13	11	1	0	novel		TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	de28f978-5783-417f-acac-610329360c22	695b49cf-c521-442f-9074-e9b47b7200c9	.	TRAFD1-90	NM_001143906	exon12	c.C1704G	p.S568S	GCCTTCCAAGCAA	.	109	5	84	0	.	0	0	0	0	0	G	112590550	C	G	112590550	2	3	53	1	0	0	0	0	0	0	0	1	16485	581	21	3		3	TRAFD1	12	112590550	Silent	SNP	C	TCGA-OR-A5LK-01A-11D-A29I-10	789947	112590550	21261345	79	11073										
RIMBP2	23504	hgsc.bcm.edu	37	chr12	130921471	130921471	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0333333333333333	4	1	0.632380073800738	0.879833146157548	0.493564935649356	1	1	0	accggggtgccctgtggctgTggcaggatgcggctgggtga	20	9	0	1	rs2292663	byfrequency	TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	de28f978-5783-417f-acac-610329360c22	695b49cf-c521-442f-9074-e9b47b7200c9	.	RIMBP2-142	NM_015347	exon10	c.A1971G	p.P657P	TGGCTGTGGCAGG	.	34	14	0	0	T|0.868;C|0.132	1	1	0	0	0	C	130921471	T	C	130921471	2	2	53	1	0	0	0	0	0	0	0	1	13398	1683	59	4		4	RIMBP2	12	130921471	Silent	SNP	T	TCGA-OR-A5LK-01A-11D-A29I-10	18330921	130921471	2930424	80	11074										
TMCO3	55002	bcgsc.ca	37	chr13	114156093	114156093	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0333333333333333	4	1	0.632380073800738	0.879833146157548	0.493564935649356	1	1	0	gttaccataggaatgctgtcCttgccttgtggctggctatg	12	9	0	0	rs2260080	byfrequency	TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	de28f978-5783-417f-acac-610329360c22	695b49cf-c521-442f-9074-e9b47b7200c9	.	TMCO3-90	NM_017905	exon5	c.C843T	p.S281S	GCTGTCCTTGCCT	.	74	5	106	0	C|0.772;T|0.228	1	1	0	0	0	T	114156093	C	T	114156093	2	4	53	1	0	0	0	0	0	0	0	1	16034	668	24	3		3	TMCO3	13	114156093	Silent	SNP	C	TCGA-OR-A5LK-01A-11D-A29I-10		114156093	1013785	81	11075										
ACIN1	22985	hgsc.bcm.edu	37	chr14	23548793	23548793	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0333333333333333	4	1	0.632380073800738	0.879833146157548	0.493564935649356	1	1	0	atgctgaacgagaacgtgaaCgtgaccttgatctggactct	11	9	2	5	rs80007670	byfrequency	TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	de28f978-5783-417f-acac-610329360c22	695b49cf-c521-442f-9074-e9b47b7200c9	.	ACIN1-156	NM_001164814	exon6	c.G1925A	p.R642H	CGTGAACGTGACC	.	148	8	202	0	C|0.994;T|0.006	0	0	0	0	0	T	23548793	C	T	23548793	3	4	53	1	0	0	0	0	1	0	0	0	142	536	19	1	2303	1	ACIN1	14	23548793	Missense_Mutation	SNP	C	TCGA-OR-A5LK-01A-11D-A29I-10		23548793	83800747	82	11076										
FMN1	342184	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	33149251	33149251	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0333333333333333	4	1	0.632380073800738	0.879833146157548	0.493564935649356	1	1	0	cctctagtttgtccttgaaaGgctggagatactcctttggg	11	9	1	2	novel		TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	de28f978-5783-417f-acac-610329360c22	695b49cf-c521-442f-9074-e9b47b7200c9	.	FMN1-23	NM_001103184	exon13	c.C3224A	p.P1075H	TTGAAAGGCTGGA	.	79	15	126	0	.	0	0	0	0	0	T	33149251	G	T	33149251	3	4	53	1	0	0	0	0	1	0	0	0	5968	1000	35	3	386	3	FMN1	15	33149251	Missense_Mutation	SNP	G	TCGA-OR-A5LK-01A-11D-A29I-10		33149251	69382141	83	11077										
ADAMTS7	11173	ucsc.edu	37	chr15	79089111	79089111	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0333333333333333	4	1	0.632380073800738	0.879833146157548	0.493564935649356	1	1	0	ctcccaacgctcccgtcgagActccagctctgggtacactg	9	17	1	1	rs3825807	byfrequency	TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	de28f978-5783-417f-acac-610329360c22	695b49cf-c521-442f-9074-e9b47b7200c9	.	ADAMTS7-226	NM_014272	exon4	c.T640C	p.S214P	GTCGAGACTCCAG	.	34	8	10	0	A|0.704;G|0.296	0	0	0	0	0	G	79089111	A	G	79089111	3	3	53	1	0	0	0	0	1	0	0	0	271	275	10	4	4504	4	ADAMTS7	15	79089111	Missense_Mutation	SNP	A	TCGA-OR-A5LK-01A-11D-A29I-10	45939860	79089111	23442281	84	11078										
SLC28A1	9154	bcgsc.ca	37	chr15	85432030	85432030	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0333333333333333	4	1	0.632380073800738	0.879833146157548	0.493564935649356	1	1	0	gccagctccctaggagtgacTtgagccccgcagagatcagg	13	13	1	3	rs17222302	byfrequency	TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	de28f978-5783-417f-acac-610329360c22	695b49cf-c521-442f-9074-e9b47b7200c9	.	SLC28A1-93	NM_201651	exon4	c.T124C	p.L42L	AGTGACTTGAGCC	.	75	4	62	0	T|0.991;C|0.009	0	0	0	0	0	C	85432030	T	C	85432030	2	2	53	1	0	0	0	0	0	0	0	1	14566	1606	56	4		4	SLC28A1	15	85432030	Silent	SNP	T	TCGA-OR-A5LK-01A-11D-A29I-10	6342919	85432030	17099362	85	11079										
ZNF598	90850	hgsc.bcm.edu	37	chr16	2059674	2059674	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0333333333333333	4	1	0.632380073800738	0.879833146157548	0.493564935649356	1	1	0	acagcacgcagctcccgcctTcccgctcaggagctgccgcc	10	20	1	0	rs71384660		TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	de28f978-5783-417f-acac-610329360c22	695b49cf-c521-442f-9074-e9b47b7200c9	.	ZNF598-432	NM_178167	exon2	c.A74G	p.E25G	CCGCCTTCCCGCT	.	5	5	0	0	T|0.007;C|0.993	0	0	0	0	0	C	2059674	T	C	2059674	3	2	53	1	0	0	0	0	1	0	0	0	18065	1770	62	4	2689	4	ZNF598	16	2059674	Missense_Mutation	SNP	T	TCGA-OR-A5LK-01A-11D-A29I-10		2059674	88295079	86	11080										
MYLK3	91807	broad.mit.edu	37	chr16	46744683	46744683	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0333333333333333	4	1	0.632380073800738	0.879833146157548	0.493564935649356	1	1	0	gcatctgtttcccctagaaaTggggacaagccactgagtct	10	11	2	2	rs200273306		TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	de28f978-5783-417f-acac-610329360c22	695b49cf-c521-442f-9074-e9b47b7200c9	.	MYLK3-374	NM_182493	exon11	c.A2133C	p.P711P	TAGAAATGGGGAC	.	58	9	73	8	T|0.996;G|0.004	0	0	0	0	0	G	46744683	T	G	46744683	2	3	53	1	0	0	0	0	0	0	0	1	10086	1451	51	5		5	MYLK3	16	46744683	Silent	SNP	T	TCGA-OR-A5LK-01A-11D-A29I-10	44685009	46744683	43610070	87	11081										
WWP2	11060	bcgsc.ca	37	chr16	69963355	69963355	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0333333333333333	4	1	0.632380073800738	0.879833146157548	0.493564935649356	1	1	0	tcttctcatgtggcagagaaGagacaggacaatggacgggt	14	7	2	2	rs1566452	byfrequency	TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	de28f978-5783-417f-acac-610329360c22	695b49cf-c521-442f-9074-e9b47b7200c9	.	WWP2-658	NM_001270454	exon12	c.G1239A	p.K413K	AGAGAAGAGACAG	.	224	8	265	1	A|0.812;C|0.000	1	1	0	0	0	A	69963355	G	A	69963355	2	1	53	1	0	0	0	0	0	0	0	1	17454	933	33	3		3	WWP2	16	69963355	Silent	SNP	G	TCGA-OR-A5LK-01A-11D-A29I-10	23218672	69963355	20391398	88	11082										
MTSS1L	92154	hgsc.bcm.edu	37	chr16	70698094	70698094	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0333333333333333	4	1	0.632380073800738	0.879833146157548	0.493564935649356	1	1	0	tggggccagcgctggacaggGcgcggcgcacggtgggcttg	21	11	0	0	rs77173170	byfrequency	TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	de28f978-5783-417f-acac-610329360c22	695b49cf-c521-442f-9074-e9b47b7200c9	.	MTSS1L-68	NM_138383	exon15	c.C1730T	p.A577V	GACAGGGCGCGGC	.	9	9	1	0	G|0.995;A|0.005	7	0	7	0	0	A	70698094	G	A	70698094	3	1	53	1	0	0	0	0	1	0	0	0	9991	1203	42	3	517	3	MTSS1L	16	70698094	Missense_Mutation	SNP	G	TCGA-OR-A5LK-01A-11D-A29I-10	734739	70698094	19656659	89	11083										
PLCG2	5336	bcgsc.ca	37	chr16	81929527	81929527	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0333333333333333	4	1	0.632380073800738	0.879833146157548	0.493564935649356	1	1	0	aaagaccacgcctttgttacCtcgaggtcagttggctgatt	10	10	1	2	rs13333716	byfrequency	TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	de28f978-5783-417f-acac-610329360c22	695b49cf-c521-442f-9074-e9b47b7200c9	.	PLCG2-892	NM_002661	exon13	c.C1188G	p.T396T	TGTTACCTCGAGG	.	137	5	135	0	C|0.936;G|0.064	0	0	0	0	0	G	81929527	C	G	81929527	2	3	53	1	0	0	0	0	0	0	0	1	12065	668	24	3		3	PLCG2	16	81929527	Silent	SNP	C	TCGA-OR-A5LK-01A-11D-A29I-10	11231433	81929527	8425226	90	11084										
JPH3	57338	hgsc.bcm.edu	37	chr16	87678021	87678021	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0333333333333333	4	1	0.632380073800738	0.879833146157548	0.493564935649356	1	1	0	ggcacggcgctgcatcccgaCgcctctccggcggtggccgg	16	17	1	0	novel		TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	de28f978-5783-417f-acac-610329360c22	695b49cf-c521-442f-9074-e9b47b7200c9	.	JPH3-92	NM_020655	exon2	c.C540T	p.D180D	TCCCGACGCCTCT	.	46	10	4	0	.	0	0	0	0	0	T	87678021	C	T	87678021	2	4	53	1	0	0	0	0	0	0	0	1	7983	535	19	1		1	JPH3	16	87678021	Silent	SNP	C	TCGA-OR-A5LK-01A-11D-A29I-10	5748494	87678021	2676732	91	11085										
MPRIP	23164	hgsc.bcm.edu	37	chr17	17062002	17062002	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0333333333333333	4	1	0.632380073800738	0.879833146157548	0.493564935649356	1	1	0	ccctgcgccctgaggcggagCctggggagctggagcgggag	20	12	0	1	rs190974068		TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	de28f978-5783-417f-acac-610329360c22	695b49cf-c521-442f-9074-e9b47b7200c9	.	MPRIP-90	NM_015134	exon14	c.C1732T	p.P578S	GCGGAGCCTGGGG	.	18	6	0	0	C|0.999;T|0.000	4	4	0	0	0	T	17062002	C	T	17062002	3	4	53	1	0	0	0	0	1	0	0	0	9771	739	26	3	1786	3	MPRIP	17	17062002	Missense_Mutation	SNP	C	TCGA-OR-A5LK-01A-11D-A29I-10		17062002	64133208	92	11086										
SLC47A2	146802	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr17	19582079	19582079	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0333333333333333	4	1	0.632380073800738	0.879833146157548	0.493564935649356	1	1	0	ccccagagcagccccacggcGgatgaccagctgtttcactg	11	16	1	2	rs201004962		TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	de28f978-5783-417f-acac-610329360c22	695b49cf-c521-442f-9074-e9b47b7200c9	.	SLC47A2-90	NM_152908	exon17	c.C1729T	p.R577C	CACGGCGGATGAC	.	132	8	139	0	.	0	0	0	0	0	A	19582079	G	A	19582079	3	1	53	1	0	0	0	0	1	0	0	0	14683	1116	39	1	83	1	SLC47A2	17	19582079	Missense_Mutation	SNP	G	TCGA-OR-A5LK-01A-11D-A29I-10	2520077	19582079	61613131	93	11087										
ENPP7	339221	bcgsc.ca	37	chr17	77709339	77709339	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0333333333333333	4	1	0.632380073800738	0.879833146157548	0.493564935649356	1	1	0	ctggagaaggtgtacgatgcCctcaaggacgcccaccccaa	11	14	1	1	rs11657217	byfrequency	TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	de28f978-5783-417f-acac-610329360c22	695b49cf-c521-442f-9074-e9b47b7200c9	.	ENPP7-92	NM_178543	exon3	c.C897G	p.A299A	CGATGCCCTCAAG	.	128	5	169	0	C|0.673;G|0.327	0	0	0	0	0	G	77709339	C	G	77709339	2	3	53	1	0	0	0	0	0	0	0	1	5148	610	22	3		3	ENPP7	17	77709339	Silent	SNP	C	TCGA-OR-A5LK-01A-11D-A29I-10	58127260	77709339	3485871	94	11088										
LAMA1	284217	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr18	7013829	7013829	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0333333333333333	4	1	0.632380073800738	0.879833146157548	0.493564935649356	1	1	0	aataccttgcaagggcaggcCccggtttcctccacacagcc	9	16	0	0	novel		TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	de28f978-5783-417f-acac-610329360c22	695b49cf-c521-442f-9074-e9b47b7200c9	.	LAMA1-149	NM_005559	exon23	c.G3348A	p.G1116G	GCAGGCCCCGGTT	.	174	13	214	0	.	0	0	0	0	0	T	7013829	C	T	7013829	2	4	53	1	0	0	0	0	0	0	0	1	8627	610	22	3		3	LAMA1	18	7013829	Silent	SNP	C	TCGA-OR-A5LK-01A-11D-A29I-10		7013829	71063419	95	11089										
RAX	30062	hgsc.bcm.edu	37	chr18	56940307	56940307	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0333333333333333	4	1	0.632380073800738	0.879833146157548	0.493564935649356	1	1	0	aaggtgccgaggatcccgtcGtccttggtaaaccccaggat	12	12	0	0	rs2271733	byfrequency	TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	de28f978-5783-417f-acac-610329360c22	695b49cf-c521-442f-9074-e9b47b7200c9	.	RAX-90	NM_013435	exon1	c.C132A	p.D44E	CCCGTCGTCCTTG	.	4	4	0	0	G|0.801;T|0.199	0	0	0	0	0	T	56940307	G	T	56940307	3	4	53	1	0	0	0	0	1	0	0	0	13131	1136	40	2	920	2	RAX	18	56940307	Missense_Mutation	SNP	G	TCGA-OR-A5LK-01A-11D-A29I-10	49926478	56940307	21136941	96	11090										
CNDP2	55748	bcgsc.ca	37	chr18	72178161	72178161	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0333333333333333	4	1	0.632380073800738	0.879833146157548	0.493564935649356	1	1	0	ttctttaaggatgtggactaTgtctgcatttctgacaatta	8	6	3	1	rs2278159	byfrequency	TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	de28f978-5783-417f-acac-610329360c22	695b49cf-c521-442f-9074-e9b47b7200c9	.	CNDP2-93	NM_018235	exon6	c.T570C	p.Y190Y	GGACTATGTCTGC	.	195	8	225	1	T|0.825;C|0.175	6	6	0	0	0	C	72178161	T	C	72178161	2	2	53	1	0	0	0	0	0	0	0	1	3600	1471	51	4		4	CNDP2	18	72178161	Silent	SNP	T	TCGA-OR-A5LK-01A-11D-A29I-10	15237854	72178161	5899087	97	11091										
CNDP1	84735	bcgsc.ca	37	chr18	72234635	72234635	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0333333333333333	4	1	0.632380073800738	0.879833146157548	0.493564935649356	1	1	0	aggaagccagcaatcacttaCggaacccgggggaacagcta	12	11	1	0	rs12960862	byfrequency	TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	de28f978-5783-417f-acac-610329360c22	695b49cf-c521-442f-9074-e9b47b7200c9	.	CNDP1-90	NM_032649	exon6	c.C723T	p.Y241Y	CACTTACGGAACC	.	177	8	165	0	C|0.481;T|0.519	0	0	0	0	0	T	72234635	C	T	72234635	2	4	53	1	0	0	0	0	0	0	0	1	3599	547	19	1		1	CNDP1	18	72234635	Silent	SNP	C	TCGA-OR-A5LK-01A-11D-A29I-10	56474	72234635	5842613	98	11092										
SALL3	27164	hgsc.bcm.edu	37	chr18	76753067	76753067	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0333333333333333	4	1	0.632380073800738	0.879833146157548	0.493564935649356	1	1	0	gggtgcggcgcccggcctgcCaagtccgcttctacctcaga	13	16	2	1	novel		TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	de28f978-5783-417f-acac-610329360c22	695b49cf-c521-442f-9074-e9b47b7200c9	.	SALL3-155	NM_171999	exon2	c.C1076G	p.P359R	GCCTGCCAAGTCC	.	40	10	2	0	.	0	0	0	0	0	G	76753067	C	G	76753067	3	3	53	1	0	0	0	0	1	0	0	0	13847	594	21	3	1082	3	SALL3	18	76753067	Missense_Mutation	SNP	C	TCGA-OR-A5LK-01A-11D-A29I-10	4518432	76753067	1324181	99	11093										
POLRMT	5442	hgsc.bcm.edu	37	chr19	621561	621561	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0333333333333333	4	1	0.632380073800738	0.879833146157548	0.493564935649356	1	1	0	ctgcagcaccaggtccagcaCgcgcccgttgacgcgccagg	13	17	0	1	rs10421235		TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	de28f978-5783-417f-acac-610329360c22	695b49cf-c521-442f-9074-e9b47b7200c9	.	POLRMT-92	NM_005035	exon10	c.G2137T	p.V713L	CCAGCACGCGCCC	.	20	12	0	0	C|0.918;A|0.082	2	2	0	0	0	A	621561	C	A	621561	3	1	53	1	0	0	0	0	1	0	0	0	12267	536	19	2	1603	2	POLRMT	19	621561	Missense_Mutation	SNP	C	TCGA-OR-A5LK-01A-11D-A29I-10		621561	58507422	100	11094										
XAB2	56949	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	7689283	7689283	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0333333333333333	4	1	0.632380073800738	0.879833146157548	0.493564935649356	1	1	0	gtcaaacacctgtgtgaagtCccgcacggtcatcactgtcc	9	14	3	1	novel		TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	de28f978-5783-417f-acac-610329360c22	695b49cf-c521-442f-9074-e9b47b7200c9	.	XAB2-272	NM_020196	exon7	c.G871A	p.D291N	TGAAGTCCCGCAC	.	141	9	109	0	.	11	9	2	0	0	T	7689283	C	T	7689283	3	4	53	1	0	0	0	0	1	0	0	0	17456	855	30	3	1748	3	XAB2	19	7689283	Missense_Mutation	SNP	C	TCGA-OR-A5LK-01A-11D-A29I-10	7067722	7689283	51439700	101	11095										
KLF1	10661	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr19	12996235	12996235	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0333333333333333	4	1	0.632380073800738	0.879833146157548	0.493564935649356	1	1	0	cctgcctcttgcgcgcccacGaacgtcggcctcgcttggat	11	17	1	0	novel		TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	de28f978-5783-417f-acac-610329360c22	695b49cf-c521-442f-9074-e9b47b7200c9	.	KLF1-90	NM_006563	exon2	c.C809T	p.S270L	GCCCACGAACGTC	.	142	21	10	0	.	0	0	0	0	0	A	12996235	G	A	12996235	3	1	53	1	0	0	0	0	1	0	0	0	8358	1059	37	1	287	1	KLF1	19	12996235	Missense_Mutation	SNP	G	TCGA-OR-A5LK-01A-11D-A29I-10	5306952	12996235	46132748	102	11096										
OCEL1	79629	hgsc.bcm.edu	37	chr19	17337557	17337557	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0333333333333333	4	1	0.632380073800738	0.879833146157548	0.493564935649356	1	1	0	cgacgccccccgcaggacccGcccatcagcccggaaacccc	9	23	1	0	rs10425488	byfrequency	TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	de28f978-5783-417f-acac-610329360c22	695b49cf-c521-442f-9074-e9b47b7200c9	.	OCEL1-68	NM_024578	exon2	c.G125T	p.R42L	GGACCCGCCCATC	.	13	9	0	0	G|0.934;T|0.066	5	3	2	0	0	T	17337557	G	T	17337557	3	4	53	1	0	0	0	0	1	0	0	0	10845	1087	38	2	131	2	OCEL1	19	17337557	Missense_Mutation	SNP	G	TCGA-OR-A5LK-01A-11D-A29I-10	4341322	17337557	41791426	103	11097										
PGLS	25796	hgsc.bcm.edu	37	chr19	17622614	17622614	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0333333333333333	4	1	0.632380073800738	0.879833146157548	0.493564935649356	1	1	0	gcgcccgtttcgcgctcggcCtgtcgggcgggagcctcgtc	16	16	0	0	rs11086075	byfrequency	TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	de28f978-5783-417f-acac-610329360c22	695b49cf-c521-442f-9074-e9b47b7200c9	.	PGLS-90	NM_012088	exon1	c.C133T	p.L45L	CTCGGCCTGTCGG	.	9	9	0	0	C|0.617;T|0.383	12	0	12	0	0	T	17622614	C	T	17622614	2	4	53	1	0	0	0	0	0	0	0	1	11821	680	24	3		3	PGLS	19	17622614	Silent	SNP	C	TCGA-OR-A5LK-01A-11D-A29I-10	285057	17622614	41506369	104	11098										
MAP1S	55201	hgsc.bcm.edu	37	chr19	17837425	17837425	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0333333333333333	4	1	0.632380073800738	0.879833146157548	0.493564935649356	1	1	0	cgccgagcgcacgctggcctCtgtgtgcgccctgctggtgt	15	15	1	0	rs17710707	byfrequency	TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	de28f978-5783-417f-acac-610329360c22	695b49cf-c521-442f-9074-e9b47b7200c9	.	MAP1S-90	NM_018174	exon5	c.C1232G	p.S411C	TGGCCTCTGTGTG	.	12	6	0	0	C|0.883;G|0.117	3	1	2	0	0	G	17837425	C	G	17837425	3	3	53	1	0	0	0	0	1	0	0	0	9262	913	32	3	1250	3	MAP1S	19	17837425	Missense_Mutation	SNP	C	TCGA-OR-A5LK-01A-11D-A29I-10	214811	17837425	41291558	105	11099										
LGI4	163175	hgsc.bcm.edu	37	chr19	35622449	35622449	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0333333333333333	4	1	0.632380073800738	0.879833146157548	0.493564935649356	1	1	0	gtcacactggaacgggttccCgcggaggtccctggggcaag	16	12	1	0	novel		TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	de28f978-5783-417f-acac-610329360c22	695b49cf-c521-442f-9074-e9b47b7200c9	.	LGI4-91	NM_139284	exon6	c.G469T	p.G157W	GGTTCCCGCGGAG	.	93	15	7	0	.	0	0	0	0	0	A	35622449	C	A	35622449	3	1	53	1	0	0	0	0	1	0	0	0	8777	652	23	2	1160	2	LGI4	19	35622449	Missense_Mutation	SNP	C	TCGA-OR-A5LK-01A-11D-A29I-10	17785024	35622449	23506534	106	11100										
CKM	1158	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	45815122	45815122	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0333333333333333	4	1	0.632380073800738	0.879833146157548	0.493564935649356	1	1	0	ctgctgctgctccttctccgTcatgctcttcagagggtagt	10	13	4	1	novel		TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	de28f978-5783-417f-acac-610329360c22	695b49cf-c521-442f-9074-e9b47b7200c9	.	CKM-91	NM_001824	exon5	c.A538G	p.T180A	TCTCCGTCATGCT	.	119	19	94	0	.	0	0	0	0	0	C	45815122	T	C	45815122	3	2	53	1	0	0	0	0	1	0	0	0	3454	1667	58	4	623	4	CKM	19	45815122	Missense_Mutation	SNP	T	TCGA-OR-A5LK-01A-11D-A29I-10	10192673	45815122	13313861	107	11101										
PPP1R13L	10848	hgsc.bcm.edu	37	chr19	45900158	45900158	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0333333333333333	4	1	0.632380073800738	0.879833146157548	0.493564935649356	1	1	0	tagagcggggtgcgcggcgaCgacggccgtcccttggggga	20	11	0	1	novel		TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	de28f978-5783-417f-acac-610329360c22	695b49cf-c521-442f-9074-e9b47b7200c9	.	PPP1R13L-91	NM_001142502	exon4	c.G357C	p.S119S	CGGCGACGACGGC	.	6	4	0	0	.	1	0	1	0	0	G	45900158	C	G	45900158	2	3	53	1	0	0	0	0	0	0	0	1	12390	523	19	2		2	PPP1R13L	19	45900158	Silent	SNP	C	TCGA-OR-A5LK-01A-11D-A29I-10	85036	45900158	13228825	108	11102										
ARHGAP35	2909	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	47492807	47492807	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0333333333333333	4	1	0.632380073800738	0.879833146157548	0.493564935649356	1	1	0	tgacttcctttcagaccacaAcctggacctggcagagaaag	9	12	1	3	novel		TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	de28f978-5783-417f-acac-610329360c22	695b49cf-c521-442f-9074-e9b47b7200c9	.	.	NM_004491	exon4	c.A3911G	p.N1304S	ACCACAACCTGGA	.	154	21	138	1	.	0	0	0	0	0	G	47492807	A	G	47492807	3	3	53	1	0	0	0	0	1	0	0	0	6816	43	2	4	3925	4	ARHGAP35	19	47492807	Missense_Mutation	SNP	A	TCGA-OR-A5LK-01A-11D-A29I-10	1592649	47492807	11636176	109	11103										
NR1H2	7376	hgsc.bcm.edu;ucsc.edu	37	chr19	50881825	50881825	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0333333333333333	4	1	0.632380073800738	0.879833146157548	0.493564935649356	1	1	0	aagaagaagattcggaaacaGcagcaggagtcacagtcaca	11	8	2	3	rs55817866	byfrequency	TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	de28f978-5783-417f-acac-610329360c22	695b49cf-c521-442f-9074-e9b47b7200c9	.	NR1H2-186	NM_007121	exon6	c.G519A	p.Q173Q	GAAACAGCAGCAG	.	125	7	64	0	G|0.903;A|0.097	0	0	0	0	0	A	50881825	G	A	50881825	2	1	53	1	0	0	0	0	0	0	0	1	10646	962	34	3		3	NR1H2	19	50881825	Silent	SNP	G	TCGA-OR-A5LK-01A-11D-A29I-10	3389018	50881825	8247158	110	11104										
ZNF761	388561	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	53959137	53959137	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0333333333333333	4	1	0.632380073800738	0.879833146157548	0.493564935649356	1	1	0	ccttacatgccatcgtagacGtcatactggagagcaacctt	8	12	1	2	novel		TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	de28f978-5783-417f-acac-610329360c22	695b49cf-c521-442f-9074-e9b47b7200c9	.	ZNF761-91	NM_001008401	exon7	c.G1376A	p.R459H	GTAGACGTCATAC	.	131	24	72	0	.	2	2	0	0	0	A	53959137	G	A	53959137	3	1	53	1	0	0	0	0	1	0	0	0	18173	1145	40	1	1387	1	ZNF761	19	53959137	Missense_Mutation	SNP	G	TCGA-OR-A5LK-01A-11D-A29I-10	3077312	53959137	5169846	111	11105										
PPP1R12C	54776	hgsc.bcm.edu	37	chr19	55628609	55628609	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0333333333333333	4	1	0.632380073800738	0.879833146157548	0.493564935649356	1	1	0	acctggtgcagggcgctgatAccgtcggcgttggtggagtc	17	10	0	1	rs66707428		TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	de28f978-5783-417f-acac-610329360c22	695b49cf-c521-442f-9074-e9b47b7200c9	.	PPP1R12C-227	NM_017607	exon1	c.T303C	p.G101G	GCTGATACCGTCG	.	8	4	0	0	A|0.808;G|0.192	2	1	1	0	0	G	55628609	A	G	55628609	2	3	53	1	0	0	0	0	0	0	0	1	12388	378	14	4		4	PPP1R12C	19	55628609	Silent	SNP	A	TCGA-OR-A5LK-01A-11D-A29I-10	1669472	55628609	3500374	112	11106										
ZNF628	89887	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	55995158	55995158	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0333333333333333	4	1	0.632380073800738	0.879833146157548	0.493564935649356	1	1	0	caggaggtgaccacggtccaGctccagcccgtggccggcca	14	16	0	1	novel		TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	de28f978-5783-417f-acac-610329360c22	695b49cf-c521-442f-9074-e9b47b7200c9	.	ZNF628-22	NM_033113	exon3	c.G2598A	p.Q866Q	GGTCCAGCTCCAG	.	202	68	114	0	.	8	3	5	0	0	A	55995158	G	A	55995158	2	1	53	1	0	0	0	0	0	0	0	1	18089	962	34	3		3	ZNF628	19	55995158	Silent	SNP	G	TCGA-OR-A5LK-01A-11D-A29I-10	366549	55995158	3133825	113	11107										
TMC2	117532	broad.mit.edu;bcgsc.ca	37	chr20	2582894	2582894	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0333333333333333	4	1	0.632380073800738	0.879833146157548	0.493564935649356	1	1	0	tcatttactttgtggttaagCgatctcagcaattctccaaa	6	9	3	0	rs202171256		TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	de28f978-5783-417f-acac-610329360c22	695b49cf-c521-442f-9074-e9b47b7200c9	.	TMC2-93	NM_080751	exon11	c.C1360T	p.R454X	GTTAAGCGATCTC	.	261	10	215	0	C|0.999;T|0.001	0	0	0	0	0	T	2582894	C	T	2582894	4	4	53	1	0	0	0	0	0	1	0	0	16022	760	27	1	1402	1	TMC2	20	2582894	Nonsense_Mutation	SNP	C	TCGA-OR-A5LK-01A-11D-A29I-10		2582894	60442626	114	11108										
MYLK2	85366	broad.mit.edu;bcgsc.ca	37	chr20	30418931	30418931	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0333333333333333	4	1	0.632380073800738	0.879833146157548	0.493564935649356	1	1	0	acatgtggagtatgggggtgAtcacctacatgctgtgagct	14	7	1	2	novel		TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	de28f978-5783-417f-acac-610329360c22	695b49cf-c521-442f-9074-e9b47b7200c9	.	MYLK2-760	NM_033118	exon10	c.A1411C	p.I471L	GGGGTGATCACCT	.	198	8	134	0	.	0	0	0	0	0	C	30418931	A	C	30418931	3	2	53	1	0	0	0	0	1	0	0	0	10085	333	12	5	1445	5	MYLK2	20	30418931	Missense_Mutation	SNP	A	TCGA-OR-A5LK-01A-11D-A29I-10	27836037	30418931	32606589	115	11109										
RTDR1	27156	bcgsc.ca	37	chr22	23482460	23482460	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0333333333333333	4	1	0.632380073800738	0.879833146157548	0.493564935649356	1	1	0	gtcatgcatgaggtcacacaAggccatgagggctttctgcc	12	11	3	2	rs4822360	byfrequency	TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	de28f978-5783-417f-acac-610329360c22	695b49cf-c521-442f-9074-e9b47b7200c9	.	RTDR1-516	NM_014433	exon2	c.T148C	p.L50L	CACACAAGGCCAT	.	95	4	121	0	A|0.436;G|0.564	0	0	0	0	0	G	23482460	A	G	23482460	2	3	53	1	0	0	0	0	0	0	0	1	13754	69	3	4		4	RTDR1	22	23482460	Silent	SNP	A	TCGA-OR-A5LK-01A-11D-A29I-10		23482460	27822106	116	11110										
CRYBB3	1417	broad.mit.edu;bcgsc.ca	37	chr22	25597401	25597401	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0333333333333333	4	1	0.632380073800738	0.879833146157548	0.493564935649356	1	1	0	agcacccgaacaggctgcagCtggcaagagccatggagacc	13	13	0	2	rs147831812	byfrequency	TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	de28f978-5783-417f-acac-610329360c22	695b49cf-c521-442f-9074-e9b47b7200c9	.	CRYBB3-90	NM_004076	exon2	c.A38G	p.E13G	CTGCAGCTGGCAA	.	119	6	202	0	C|0.997;G|0.003	0	0	0	0	0	G	25597401	C	G	25597401	3	3	53	1	0	0	0	0	1	0	0	0	3918	797	28	3	40	3	CRYBB3	22	25597401	Missense_Mutation	SNP	C	TCGA-OR-A5LK-01A-11D-A29I-10	2114941	25597401	25707165	117	11111										
LIMK2	3985	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr22	31667154	31667154	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0333333333333333	4	1	0.632380073800738	0.879833146157548	0.493564935649356	1	1	0	tctatgtgcatcatccaccgGgatctgaactcgcacaactg	8	13	3	1	novel		TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	de28f978-5783-417f-acac-610329360c22	695b49cf-c521-442f-9074-e9b47b7200c9	.	LIMK2-548	NM_005569	exon12	c.G1350A	p.R450R	CCACCGGGATCTG	.	131	10	152	0	.	1	1	0	0	0	A	31667154	G	A	31667154	2	1	53	1	0	0	0	0	0	0	0	1	8825	1219	43	3		3	LIMK2	22	31667154	Silent	SNP	G	TCGA-OR-A5LK-01A-11D-A29I-10	6069753	31667154	19637412	118	11112										
TBL1X	6907	hgsc.bcm.edu;broad.mit.edu	37	chrX	9656179	9656180	+	In_Frame_Ins	INS	-	-	GCG													0.0333333333333333	4	1	0.632380073800738	0.879833146157548	0.493564935649356	1	1	0	tcgctcagcagcaagccagtINSgcggcggcggcggcggctgc					novel		TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	de28f978-5783-417f-acac-610329360c22	695b49cf-c521-442f-9074-e9b47b7200c9	.	TBL1X-131	NM_001139466	exon7	c.480_481insGCG	p.S160delinsSA	AGCCAGTGCGGCG	.	81	28	14	0	.	0	0	0	0	0	GCG	9656180	-	GCG	9656179	7	5	53	1	0	1	1	0	0	0	0	0	15676	1693	59	0	494	0	TBL1X	23	9656179	In_Frame_Ins	INS	-	TCGA-OR-A5LK-01A-11D-A29I-10		9656179	145614381	119	11113										
PPEF1	5475	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	18822065	18822065	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0333333333333333	4	1	0.632380073800738	0.879833146157548	0.493564935649356	1	1	0	aaatggctgttttccaaataCgtgccgaggagggggctgct	14	8	0	0	novel		TCGA-OR-A5LK-01A-11D-A29I-10	TCGA-OR-A5LK-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	de28f978-5783-417f-acac-610329360c22	695b49cf-c521-442f-9074-e9b47b7200c9	.	PPEF1-226	NM_006240	exon14	c.C1121T	p.T374M	CAAATACGTGCCG	.	46	8	43	0	.	0	0	0	0	0	T	18822065	C	T	18822065	3	4	53	1	0	0	0	0	1	0	0	0	12336	536	19	1	1163	1	PPEF1	23	18822065	Missense_Mutation	SNP	C	TCGA-OR-A5LK-01A-11D-A29I-10	9165886	18822065	136448495	120	11114										
PRAMEF4	400735	broad.mit.edu;bcgsc.ca	37	chr1	12939507	12939507	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0909090909090909	9	0.676513436209403	1.45897631779985	2.97198879551821	1.16295213737669	0.369849964277209	1	0	cagccctaatttgagcaaatCtgctccagcagagagtacca	8	12	1	2	rs140792942		TCGA-OR-A5LL-01A-11D-A29I-10	TCGA-OR-A5LL-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9bfd4b2e-0577-4c94-8d6c-dafa9104b502	2d4f1606-9261-4ba8-96a9-ee307989af11	.	PRAMEF4-45	NM_001009611	exon4	c.G1295C	p.R432T	GCAAATCTGCTCC	.	217	55	244	2	C|1.000;G|0.000	0	0	0	0	0	G	12939507	C	G	12939507	3	3	54	1	0	0	0	0	1	0	0	0	12469	913	32	3	145	3	PRAMEF4	1	12939507	Missense_Mutation	SNP	C	TCGA-OR-A5LL-01A-11D-A29I-10		12939507	236311114	1	11115										
PRAMEF10	343071	ucsc.edu	37	chr1	12952796	12952796	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	9	0.676513436209403	1.45897631779985	2.97198879551821	1.16295213737669	0.369849964277209	1	0	cagatggccatgagccacagTtagggcaagggacgggacca	15	10	0	2	rs2637919	bycluster;byfrequency	TCGA-OR-A5LL-01A-11D-A29I-10	TCGA-OR-A5LL-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9bfd4b2e-0577-4c94-8d6c-dafa9104b502	2d4f1606-9261-4ba8-96a9-ee307989af11	.	PRAMEF10-90	NM_001039361	exon4	c.A1376C	p.N459T	CCACAGTTAGGGC	.	41	17	170	12	T|0.667;G|0.333	0	0	0	0	0	G	12952796	T	G	12952796	3	3	54	1	0	0	0	0	1	0	0	0	12458	1725	60	5	52	5	PRAMEF10	1	12952796	Missense_Mutation	SNP	T	TCGA-OR-A5LL-01A-11D-A29I-10	13289	12952796	236297825	2	11116										
TMEM50A	23585	bcgsc.ca	37	chr1	25678142	25678142	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	9	0.676513436209403	1.45897631779985	2.97198879551821	1.16295213737669	0.369849964277209	1	0	atgcagtatcgaatggacaaGtccgaggtgatagttacagt	12	6	0	1	novel		TCGA-OR-A5LL-01A-11D-A29I-10	TCGA-OR-A5LL-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9bfd4b2e-0577-4c94-8d6c-dafa9104b502	2d4f1606-9261-4ba8-96a9-ee307989af11	.	TMEM50A-90	NM_014313	exon4	c.G232T	p.V78F	GGACAAGTCCGAG	.	54	4	80	0	.	58	58	0	0	0	T	25678142	G	T	25678142	3	4	54	1	0	0	0	0	1	0	0	0	16212	1029	36	3	242	3	TMEM50A	1	25678142	Missense_Mutation	SNP	G	TCGA-OR-A5LL-01A-11D-A29I-10	12725346	25678142	223572479	3	11117										
CSMD2	114784	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	34276428	34276428	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	9	0.676513436209403	1.45897631779985	2.97198879551821	1.16295213737669	0.369849964277209	1	0	aaattgggggaggtgatgatGcccgaggggcctcgaaggtg	19	6	0	2	novel		TCGA-OR-A5LL-01A-11D-A29I-10	TCGA-OR-A5LL-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9bfd4b2e-0577-4c94-8d6c-dafa9104b502	2d4f1606-9261-4ba8-96a9-ee307989af11	.	CSMD2-103	NM_052896	exon10	c.C1242T	p.G414G	GATGATGCCCGAG	.	16	6	46	0	.	0	0	0	0	0	A	34276428	G	A	34276428	2	1	54	1	0	0	0	0	0	0	0	1	3951	1306	46	3		3	CSMD2	1	34276428	Silent	SNP	G	TCGA-OR-A5LL-01A-11D-A29I-10	8598286	34276428	214974193	4	11118										
DNAJC6	9829	bcgsc.ca	37	chr1	65858145	65858145	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	9	0.676513436209403	1.45897631779985	2.97198879551821	1.16295213737669	0.369849964277209	1	0	gagaagtcattctgtgaggaGgaccacgctgccctagtgaa	13	9	2	3	rs4325172	byfrequency	TCGA-OR-A5LL-01A-11D-A29I-10	TCGA-OR-A5LL-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9bfd4b2e-0577-4c94-8d6c-dafa9104b502	2d4f1606-9261-4ba8-96a9-ee307989af11	.	DNAJC6-272	NM_001256864	exon12	c.G1500A	p.E500E	TGAGGAGGACCAC	.	77	5	226	1	G|0.576;A|0.424	2	2	0	0	0	A	65858145	G	A	65858145	2	1	54	1	0	0	0	0	0	0	0	1	4664	991	35	3		3	DNAJC6	1	65858145	Silent	SNP	G	TCGA-OR-A5LL-01A-11D-A29I-10	31581717	65858145	183392476	5	11119										
SV2A	9900	bcgsc.ca	37	chr1	149876665	149876665	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0909090909090909	9	0.676513436209403	1.45897631779985	2.97198879551821	1.16295213737669	0.369849964277209	1	0	aggatgggtgcagccttggtGattcccacgaaggatgtgaa	15	7	0	2	rs13067	bycluster;byfrequency;by1000genomes	TCGA-OR-A5LL-01A-11D-A29I-10	TCGA-OR-A5LL-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9bfd4b2e-0577-4c94-8d6c-dafa9104b502	2d4f1606-9261-4ba8-96a9-ee307989af11	.	SV2A-97	NM_014849	exon13	c.C2130T	p.I710I	CTTGGTGATTCCC	.	480	40	352	1	G|0.984;A|0.016	2	2	0	0	0	A	149876665	G	A	149876665	2	1	54	1	0	0	0	0	0	0	0	1	15454	1280	45	3		3	SV2A	1	149876665	Silent	SNP	G	TCGA-OR-A5LL-01A-11D-A29I-10	84018520	149876665	99373956	6	11120										
SPTA1	6708	broad.mit.edu	37	chr1	158641186	158641186	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0909090909090909	9	0.676513436209403	1.45897631779985	2.97198879551821	1.16295213737669	0.369849964277209	1	0	ctcaaagtcttcatgcttctGaagaagggcttctgcactgc	9	11	5	2	novel		TCGA-OR-A5LL-01A-11D-A29I-10	TCGA-OR-A5LL-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9bfd4b2e-0577-4c94-8d6c-dafa9104b502	2d4f1606-9261-4ba8-96a9-ee307989af11	.	SPTA1-142	NM_003126	exon12	c.C1546T	p.Q516X	GCTTCTGAAGAAG	.	161	6	70	0	.	0	0	0	0	0	A	158641186	G	A	158641186	4	1	54	1	0	0	0	0	0	1	0	0	15153	1299	45	3	5877	3	SPTA1	1	158641186	Nonsense_Mutation	SNP	G	TCGA-OR-A5LL-01A-11D-A29I-10	8764521	158641186	90609435	7	11121										
SPTA1	6708	broad.mit.edu;bcgsc.ca	37	chr1	158644356	158644356	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0909090909090909	9	0.676513436209403	1.45897631779985	2.97198879551821	1.16295213737669	0.369849964277209	1	0	ctgctgatgcctgtccagcaGaacttctccaccagccacat	7	16	1	2	novel		TCGA-OR-A5LL-01A-11D-A29I-10	TCGA-OR-A5LL-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9bfd4b2e-0577-4c94-8d6c-dafa9104b502	2d4f1606-9261-4ba8-96a9-ee307989af11	.	SPTA1-142	NM_003126	exon9	c.C1222T	p.L408L	CCAGCAGAACTTC	.	183	12	96	1	.	0	0	0	0	0	A	158644356	G	A	158644356	2	1	54	1	0	0	0	0	0	0	0	1	15153	933	33	3		3	SPTA1	1	158644356	Silent	SNP	G	TCGA-OR-A5LL-01A-11D-A29I-10	3170	158644356	90606265	8	11122										
OR10J1	26476	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	159410014	159410014	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	9	0.676513436209403	1.45897631779985	2.97198879551821	1.16295213737669	0.369849964277209	1	0	agaggctgcgtatccaacttGtcctgggggcctgcagcatt	13	11	0	1	novel		TCGA-OR-A5LL-01A-11D-A29I-10	TCGA-OR-A5LL-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9bfd4b2e-0577-4c94-8d6c-dafa9104b502	2d4f1606-9261-4ba8-96a9-ee307989af11	.	OR10J1-69	NM_012351	exon1	c.G466T	p.V156F	CAACTTGTCCTGG	.	800	83	239	0	.	0	0	0	0	0	T	159410014	G	T	159410014	3	4	54	1	0	0	0	0	1	0	0	0	10939	1377	48	3	468	3	OR10J1	1	159410014	Missense_Mutation	SNP	G	TCGA-OR-A5LL-01A-11D-A29I-10	765658	159410014	89840607	9	11123										
OLFML2B	25903	bcgsc.ca	37	chr1	161967692	161967692	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	9	0.676513436209403	1.45897631779985	2.97198879551821	1.16295213737669	0.369849964277209	1	0	ttgttccccacccagcaggaGcatctttccccagcgagtct	8	16	2	0	novel		TCGA-OR-A5LL-01A-11D-A29I-10	TCGA-OR-A5LL-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9bfd4b2e-0577-4c94-8d6c-dafa9104b502	2d4f1606-9261-4ba8-96a9-ee307989af11	.	OLFML2B-69	NM_015441	exon6	c.C1397T	p.A466V	GCAGGAGCATCTT	.	280	8	96	0	.	10	10	0	0	0	A	161967692	G	A	161967692	3	1	54	1	0	0	0	0	1	0	0	0	10887	971	34	3	867	3	OLFML2B	1	161967692	Missense_Mutation	SNP	G	TCGA-OR-A5LL-01A-11D-A29I-10	2557678	161967692	87282929	10	11124										
FMO1	2326	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	171254505	171254505	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	9	0.676513436209403	1.45897631779985	2.97198879551821	1.16295213737669	0.369849964277209	1	0	atgctcaccataccagttccGcttgactggcccaggaaaat	8	13	1	1	rs28360433	byfrequency	TCGA-OR-A5LL-01A-11D-A29I-10	TCGA-OR-A5LL-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9bfd4b2e-0577-4c94-8d6c-dafa9104b502	2d4f1606-9261-4ba8-96a9-ee307989af11	.	FMO1-515	NM_002021	exon9	c.G1421A	p.R474H	AGTTCCGCTTGAC	.	99	14	109	0	G|0.994;A|0.006	0	0	0	0	0	A	171254505	G	A	171254505	3	1	54	1	0	0	0	0	1	0	0	0	5973	1087	38	1	1451	1	FMO1	1	171254505	Missense_Mutation	SNP	G	TCGA-OR-A5LL-01A-11D-A29I-10	9286813	171254505	77996116	11	11125										
HMCN1	83872	broad.mit.edu	37	chr1	185956605	185956605	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	9	0.676513436209403	1.45897631779985	2.97198879551821	1.16295213737669	0.369849964277209	1	0	ggcagcagatactcagtacaAttgaaggcattccagtaact	9	9	1	2	novel		TCGA-OR-A5LL-01A-11D-A29I-10	TCGA-OR-A5LL-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9bfd4b2e-0577-4c94-8d6c-dafa9104b502	2d4f1606-9261-4ba8-96a9-ee307989af11	.	HMCN1-113	NM_031935	exon20	c.A2977G	p.I993V	AGTACAATTGAAG	.	63	3	88	0	.	0	0	0	0	0	G	185956605	A	G	185956605	3	3	54	1	0	0	0	0	1	0	0	0	7241	101	4	4	3055	4	HMCN1	1	185956605	Missense_Mutation	SNP	A	TCGA-OR-A5LL-01A-11D-A29I-10	14702100	185956605	63294016	12	11126										
PM20D1	148811	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	205797785	205797785	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	9	0.676513436209403	1.45897631779985	2.97198879551821	1.16295213737669	0.369849964277209	1	0	gagaaactggctcctggtctGtgtcagcattctgaatcaac	10	10	4	2	novel		TCGA-OR-A5LL-01A-11D-A29I-10	TCGA-OR-A5LL-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9bfd4b2e-0577-4c94-8d6c-dafa9104b502	2d4f1606-9261-4ba8-96a9-ee307989af11	.	PM20D1-69	NM_152491	exon13	c.C1472G	p.T491R	TGGTCTGTGTCAG	.	54	9	67	0	.	0	0	0	0	0	C	205797785	G	C	205797785	3	2	54	1	0	0	0	0	1	0	0	0	12157	1377	48	3	40	3	PM20D1	1	205797785	Missense_Mutation	SNP	G	TCGA-OR-A5LL-01A-11D-A29I-10	19841180	205797785	43452836	13	11127										
NLRP3	114548	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	247587746	247587746	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	9	0.676513436209403	1.45897631779985	2.97198879551821	1.16295213737669	0.369849964277209	1	0	gggagacattctcctgagcaGcctcatcagaaagaagctgc	11	11	3	4	novel		TCGA-OR-A5LL-01A-11D-A29I-10	TCGA-OR-A5LL-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9bfd4b2e-0577-4c94-8d6c-dafa9104b502	2d4f1606-9261-4ba8-96a9-ee307989af11	.	NLRP3-674	NM_183395	exon3	c.G1001A	p.S334N	TGAGCAGCCTCAT	.	84	28	110	0	.	0	0	0	0	0	A	247587746	G	A	247587746	3	1	54	1	0	0	0	0	1	0	0	0	10507	971	34	3	1011	3	NLRP3	1	247587746	Missense_Mutation	SNP	G	TCGA-OR-A5LL-01A-11D-A29I-10	41789961	247587746	1662875	14	11128										
DCTN1	1639	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr2	74588719	74588719	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0909090909090909	9	0.676513436209403	1.45897631779985	2.97198879551821	1.16295213737669	0.369849964277209	1	0	ccagccgcacatgagaaggtCactttgcccatgtagactgt	10	12	1	2	novel		TCGA-OR-A5LL-01A-11D-A29I-10	TCGA-OR-A5LL-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9bfd4b2e-0577-4c94-8d6c-dafa9104b502	2d4f1606-9261-4ba8-96a9-ee307989af11	.	DCTN1-95	NM_004082	exon32	c.G3744A	p.V1248V	GAAGGTCACTTTG	.	34	6	87	0	.	54	24	29	1	0	T	74588719	C	T	74588719	2	4	54	1	0	0	0	0	0	0	0	1	4312	813	29	3		3	DCTN1	2	74588719	Silent	SNP	C	TCGA-OR-A5LL-01A-11D-A29I-10		74588719	168610654	15	11129										
DNAH6	1768	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	84924798	84924798	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	9	0.676513436209403	1.45897631779985	2.97198879551821	1.16295213737669	0.369849964277209	1	0	aactggagcaggttttagcgGccaccagaccaagagcaaaa	11	10	0	2	novel		TCGA-OR-A5LL-01A-11D-A29I-10	TCGA-OR-A5LL-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9bfd4b2e-0577-4c94-8d6c-dafa9104b502	2d4f1606-9261-4ba8-96a9-ee307989af11	.	DNAH6-69	NM_001370	exon47	c.G7624T	p.A2542S	TTAGCGGCCACCA	.	388	44	96	0	.	1	1	0	0	0	T	84924798	G	T	84924798	3	4	54	1	0	0	0	0	1	0	0	0	4616	1203	42	3	7806	3	DNAH6	2	84924798	Missense_Mutation	SNP	G	TCGA-OR-A5LL-01A-11D-A29I-10	10336079	84924798	158274575	16	11130										
ZRANB3	84083	broad.mit.edu;bcgsc.ca	37	chr2	135965341	135965341	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	9	0.676513436209403	1.45897631779985	2.97198879551821	1.16295213737669	0.369849964277209	1	0	tggatgtagagggcttcacaGtgagatctgcctggactgtg	15	7	2	2	novel		TCGA-OR-A5LL-01A-11D-A29I-10	TCGA-OR-A5LL-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9bfd4b2e-0577-4c94-8d6c-dafa9104b502	2d4f1606-9261-4ba8-96a9-ee307989af11	.	ZRANB3-658	NM_032143	exon19	c.C2672T	p.T891I	TTCACAGTGAGAT	.	66	28	69	2	.	1	1	0	0	0	A	135965341	G	A	135965341	3	1	54	1	0	0	0	0	1	0	0	0	18261	1029	36	3	579	3	ZRANB3	2	135965341	Missense_Mutation	SNP	G	TCGA-OR-A5LL-01A-11D-A29I-10	51040543	135965341	107234032	17	11131										
SP5	389058	hgsc.bcm.edu	37	chr2	171573185	171573185	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	9	0.676513436209403	1.45897631779985	2.97198879551821	1.16295213737669	0.369849964277209	1	0	gcggcgcaggccgcgctgccGccaggctactccaacctgct	13	18	0	0	rs1134626	byfrequency	TCGA-OR-A5LL-01A-11D-A29I-10	TCGA-OR-A5LL-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9bfd4b2e-0577-4c94-8d6c-dafa9104b502	2d4f1606-9261-4ba8-96a9-ee307989af11	.	SP5-90	NM_001003845	exon2	c.G468T	p.P156P	GCTGCCGCCAGGC	.	4	4	0	0	G|0.766;T|0.234	1	0	1	0	0	T	171573185	G	T	171573185	2	4	54	1	0	0	0	0	0	0	0	1	15002	1074	38	2		2	SP5	2	171573185	Silent	SNP	G	TCGA-OR-A5LL-01A-11D-A29I-10	35607844	171573185	71626188	18	11132										
CLK1	1195	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	201719353	201719353	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0909090909090909	9	0.676513436209403	1.45897631779985	2.97198879551821	1.16295213737669	0.369849964277209	1	0	acgtacctggttttctgtatCatatgttttggtagaggtcc	10	7	2	1	novel		TCGA-OR-A5LL-01A-11D-A29I-10	TCGA-OR-A5LL-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9bfd4b2e-0577-4c94-8d6c-dafa9104b502	2d4f1606-9261-4ba8-96a9-ee307989af11	.	CLK1-784	NM_001162407	exon11	c.G1332A	p.M444I	CTGTATCATATGT	.	53	6	104	0	.	169	130	39	0	0	T	201719353	C	T	201719353	3	4	54	1	0	0	0	0	1	0	0	0	3542	826	29	3	260	3	CLK1	2	201719353	Missense_Mutation	SNP	C	TCGA-OR-A5LL-01A-11D-A29I-10	30146168	201719353	41480020	19	11133										
FAM124B	79843	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	225266236	225266236	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0909090909090909	9	0.676513436209403	1.45897631779985	2.97198879551821	1.16295213737669	0.369849964277209	1	0	ctggagagagtccaggacgcGaaatagcctatcctctcccg	11	13	1	1	novel		TCGA-OR-A5LL-01A-11D-A29I-10	TCGA-OR-A5LL-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9bfd4b2e-0577-4c94-8d6c-dafa9104b502	2d4f1606-9261-4ba8-96a9-ee307989af11	.	FAM124B-92	NM_024785	exon1	c.C250T	p.R84C	GGACGCGAAATAG	.	93	19	110	0	.	0	0	0	0	0	A	225266236	G	A	225266236	3	1	54	1	0	0	0	0	1	0	0	0	5442	1058	37	1	1216	1	FAM124B	2	225266236	Missense_Mutation	SNP	G	TCGA-OR-A5LL-01A-11D-A29I-10	23546883	225266236	17933137	20	11134										
KLHL30	377007	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	239059526	239059526	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	9	0.676513436209403	1.45897631779985	2.97198879551821	1.16295213737669	0.369849964277209	1	0	gatgcgctgtacgtgacgggCggccgctggcagggcatgga	19	10	0	1	novel		TCGA-OR-A5LL-01A-11D-A29I-10	TCGA-OR-A5LL-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9bfd4b2e-0577-4c94-8d6c-dafa9104b502	2d4f1606-9261-4ba8-96a9-ee307989af11	.	KLHL30-22	NM_198582	exon8	c.C1557T	p.G519G	GACGGGCGGCCGC	.	155	21	236	1	.	0	0	0	0	0	T	239059526	C	T	239059526	2	4	54	1	0	0	0	0	0	0	0	1	8405	755	27	1		1	KLHL30	2	239059526	Silent	SNP	C	TCGA-OR-A5LL-01A-11D-A29I-10	13793290	239059526	4139847	21	11135										
STAB1	23166	broad.mit.edu	37	chr3	52546974	52546974	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	9	0.676513436209403	1.45897631779985	2.97198879551821	1.16295213737669	0.369849964277209	1	0	gacgctgccgaacctggtcaGgtggggccgccattgccagg	16	13	1	0	novel		TCGA-OR-A5LL-01A-11D-A29I-10	TCGA-OR-A5LL-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9bfd4b2e-0577-4c94-8d6c-dafa9104b502	2d4f1606-9261-4ba8-96a9-ee307989af11	.	STAB1-139	NM_015136	exon29	c.G3158T	p.R1053M	TGGTCAGGTGGGG	.	86	3	95	0	.	1	1	0	0	0	T	52546974	G	T	52546974	3	4	54	1	0	0	0	0	1	0	0	0	15274	1014	35	3	3272	3	STAB1	3	52546974	Missense_Mutation	SNP	G	TCGA-OR-A5LL-01A-11D-A29I-10		52546974	145475456	22	11136										
DZIP3	9666	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	108407467	108407467	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	9	0.676513436209403	1.45897631779985	2.97198879551821	1.16295213737669	0.369849964277209	1	0	gaaaatcagtgtcaaatgttAattgtgtttcacctagtcat	7	6	4	0	novel		TCGA-OR-A5LL-01A-11D-A29I-10	TCGA-OR-A5LL-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9bfd4b2e-0577-4c94-8d6c-dafa9104b502	2d4f1606-9261-4ba8-96a9-ee307989af11	.	DZIP3-91	NM_014648	exon30	c.A3298G	p.N1100D	AATGTTAATTGTG	.	179	95	260	0	.	9	3	6	0	0	G	108407467	A	G	108407467	3	3	54	1	0	0	0	0	1	0	0	0	4876	362	13	4	3412	4	DZIP3	3	108407467	Missense_Mutation	SNP	A	TCGA-OR-A5LL-01A-11D-A29I-10	55860493	108407467	89614963	23	11137										
PODXL2	50512	broad.mit.edu;bcgsc.ca	37	chr3	127379708	127379708	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0909090909090909	9	0.676513436209403	1.45897631779985	2.97198879551821	1.16295213737669	0.369849964277209	1	0	gcagggcttggggtagagttCgaggctcctcaggaagcaag	17	8	1	1	rs114235935	byfrequency	TCGA-OR-A5LL-01A-11D-A29I-10	TCGA-OR-A5LL-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9bfd4b2e-0577-4c94-8d6c-dafa9104b502	2d4f1606-9261-4ba8-96a9-ee307989af11	.	PODXL2-91	NM_015720	exon3	c.C837T	p.F279F	AGAGTTCGAGGCT	.	80	14	112	0	C|0.997;T|0.003	12	9	3	0	0	T	127379708	C	T	127379708	2	4	54	1	0	0	0	0	0	0	0	1	12210	883	31	1		1	PODXL2	3	127379708	Silent	SNP	C	TCGA-OR-A5LL-01A-11D-A29I-10	18972241	127379708	70642722	24	11138										
CP	1356	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	148896230	148896230	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	9	0.676513436209403	1.45897631779985	2.97198879551821	1.16295213737669	0.369849964277209	1	0	ttattgctttctatgaattcCtcatcatctttgtttacttt	3	8	4	1	novel		TCGA-OR-A5LL-01A-11D-A29I-10	TCGA-OR-A5LL-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9bfd4b2e-0577-4c94-8d6c-dafa9104b502	2d4f1606-9261-4ba8-96a9-ee307989af11	.	CP-515	NM_000096	exon16	c.G2850C	p.E950D	GAATTCCTCATCA	.	88	15	107	0	.	4	4	0	0	0	G	148896230	C	G	148896230	3	3	54	1	0	0	0	0	1	0	0	0	3793	680	24	3	363	3	CP	3	148896230	Missense_Mutation	SNP	C	TCGA-OR-A5LL-01A-11D-A29I-10	21516522	148896230	49126200	25	11139										
SLITRK3	22865	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	164908554	164908554	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	9	0.676513436209403	1.45897631779985	2.97198879551821	1.16295213737669	0.369849964277209	1	0	tagtccatcctagagcaattGtgcttagaagaattatccac	7	9	0	3	novel		TCGA-OR-A5LL-01A-11D-A29I-10	TCGA-OR-A5LL-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9bfd4b2e-0577-4c94-8d6c-dafa9104b502	2d4f1606-9261-4ba8-96a9-ee307989af11	.	SLITRK3-100	NM_014926	exon2	c.C65T	p.T22I	GCAATTGTGCTTA	.	67	15	113	0	.	0	0	0	0	0	A	164908554	G	A	164908554	3	1	54	1	0	0	0	0	1	0	0	0	14779	1377	48	3	2872	3	SLITRK3	3	164908554	Missense_Mutation	SNP	G	TCGA-OR-A5LL-01A-11D-A29I-10	16012324	164908554	33113876	26	11140										
RFC1	5981	broad.mit.edu;bcgsc.ca	37	chr4	39310527	39310528	+	Frame_Shift_Ins	INS	-	-	A													0.0909090909090909	9	0.676513436209403	1.45897631779985	2.97198879551821	1.16295213737669	0.369849964277209	1	0	ccttttttattgtctttgccINSaaactgtcccttttggaagt					novel		TCGA-OR-A5LL-01A-11D-A29I-10	TCGA-OR-A5LL-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9bfd4b2e-0577-4c94-8d6c-dafa9104b502	2d4f1606-9261-4ba8-96a9-ee307989af11	.	RFC1-230	NM_002913	exon13	c.1614_1615insT	p.L538fs	CTTTGCCAAACTG	.	78	9	76	0	.	0	0	0	0	0	A	39310528	-	A	39310527	7	5	54	1	0	1	1	0	0	0	0	0	13279	593	21	0	1881	0	RFC1	4	39310527	Frame_Shift_Ins	INS	-	TCGA-OR-A5LL-01A-11D-A29I-10		39310527	151843749	27	11141										
CHRNA9	55584	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr4	40337918	40337918	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0909090909090909	9	0.676513436209403	1.45897631779985	2.97198879551821	1.16295213737669	0.369849964277209	1	0	aagattattctaatgctcttCgtccagtggaagatacagat	8	7	2	3	novel		TCGA-OR-A5LL-01A-11D-A29I-10	TCGA-OR-A5LL-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9bfd4b2e-0577-4c94-8d6c-dafa9104b502	2d4f1606-9261-4ba8-96a9-ee307989af11	.	CHRNA9-96	NM_017581	exon2	c.C139T	p.R47C	GCTCTTCGTCCAG	.	144	8	133	0	.	0	0	0	0	0	T	40337918	C	T	40337918	3	4	54	1	0	0	0	0	1	0	0	0	3395	884	31	1	145	1	CHRNA9	4	40337918	Missense_Mutation	SNP	C	TCGA-OR-A5LL-01A-11D-A29I-10	1027391	40337918	150816358	28	11142										
FRAS1	80144	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	79328954	79328954	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	9	0.676513436209403	1.45897631779985	2.97198879551821	1.16295213737669	0.369849964277209	1	0	aaggcatcgtatggtacaggCactcaggagccccagcccag	12	13	1	0	novel		TCGA-OR-A5LL-01A-11D-A29I-10	TCGA-OR-A5LL-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9bfd4b2e-0577-4c94-8d6c-dafa9104b502	2d4f1606-9261-4ba8-96a9-ee307989af11	.	FRAS1-68	NM_001166133	exon31	c.C4267T	p.H1423Y	TACAGGCACTCAG	.	126	41	172	1	.	0	0	0	0	0	T	79328954	C	T	79328954	3	4	54	1	0	0	0	0	1	0	0	0	6061	710	25	3	4389	3	FRAS1	4	79328954	Missense_Mutation	SNP	C	TCGA-OR-A5LL-01A-11D-A29I-10	38991036	79328954	111825322	29	11143										
DSPP	1834	bcgsc.ca	37	chr4	88536999	88536999	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	9	0.676513436209403	1.45897631779985	2.97198879551821	1.16295213737669	0.369849964277209	1	0	caatagcagtgacagcagtgAcagcagcgacagcagtgata	12	9	0	3	rs202222170		TCGA-OR-A5LL-01A-11D-A29I-10	TCGA-OR-A5LL-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9bfd4b2e-0577-4c94-8d6c-dafa9104b502	2d4f1606-9261-4ba8-96a9-ee307989af11	.	DSPP-90	NM_014208	exon5	c.A3185G	p.D1062G	GCAGTGACAGCAG	.	356	17	452	0	.	0	0	0	0	0	G	88536999	A	G	88536999	3	3	54	1	0	0	0	0	1	0	0	0	4793	275	10	4	3199	4	DSPP	4	88536999	Missense_Mutation	SNP	A	TCGA-OR-A5LL-01A-11D-A29I-10	9208045	88536999	102617277	30	11144										
FBXL7	23194	bcgsc.ca	37	chr5	15937010	15937010	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0909090909090909	9	0.676513436209403	1.45897631779985	2.97198879551821	1.16295213737669	0.369849964277209	1	0	gaccacggtgtggagtacctCgccaagaactgcaccaaact	10	13	0	1	rs61748187	byfrequency	TCGA-OR-A5LL-01A-11D-A29I-10	TCGA-OR-A5LL-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9bfd4b2e-0577-4c94-8d6c-dafa9104b502	2d4f1606-9261-4ba8-96a9-ee307989af11	.	FBXL7-228	NM_012304	exon4	c.C1191T	p.L397L	GTACCTCGCCAAG	.	122	5	128	1	C|0.982;T|0.018	7	7	0	0	0	T	15937010	C	T	15937010	2	4	54	1	0	0	0	0	0	0	0	1	5743	871	31	1		1	FBXL7	5	15937010	Silent	SNP	C	TCGA-OR-A5LL-01A-11D-A29I-10		15937010	164978250	31	11145										
LOX	4015	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr5	121405754	121405754	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	9	0.676513436209403	1.45897631779985	2.97198879551821	1.16295213737669	0.369849964277209	1	0	caaataacacttacggtgaaAttgtgcagcctgaggcatac	9	9	0	2	novel		TCGA-OR-A5LL-01A-11D-A29I-10	TCGA-OR-A5LL-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9bfd4b2e-0577-4c94-8d6c-dafa9104b502	2d4f1606-9261-4ba8-96a9-ee307989af11	.	LOX-650	NM_002317	exon6	c.T1241G	p.I414S	GGTGAAATTGTGC	.	247	16	117	0	.	0	0	0	0	0	C	121405754	A	C	121405754	3	2	54	1	0	0	0	0	1	0	0	0	8925	101	4	5	20	5	LOX	5	121405754	Missense_Mutation	SNP	A	TCGA-OR-A5LL-01A-11D-A29I-10	105468744	121405754	59509506	32	11146										
PHAX	51808	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr5	125939673	125939673	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0909090909090909	9	0.676513436209403	1.45897631779985	2.97198879551821	1.16295213737669	0.369849964277209	1	0	aatctcaagagcatacaaaaGatctagacaaggaactagat	7	7	2	4	novel		TCGA-OR-A5LL-01A-11D-A29I-10	TCGA-OR-A5LL-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9bfd4b2e-0577-4c94-8d6c-dafa9104b502	2d4f1606-9261-4ba8-96a9-ee307989af11	.	PHAX-90	NM_032177	exon2	c.G508C	p.D170H	ACAAAAGATCTAG	.	268	16	96	0	.	51	51	0	0	0	C	125939673	G	C	125939673	3	2	54	1	0	0	0	0	1	0	0	0	11842	942	33	3	514	3	PHAX	5	125939673	Missense_Mutation	SNP	G	TCGA-OR-A5LL-01A-11D-A29I-10	4533919	125939673	54975587	33	11147			1	53		4	4	153	G		1.876047e-11
PHAX	51808	broad.mit.edu;bcgsc.ca	37	chr5	125939735	125939735	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	9	0.676513436209403	1.45897631779985	2.97198879551821	1.16295213737669	0.369849964277209	1	0	aaaatgggatcaaaggaagaGgaaaatgggcaaggtcatct	13	4	3	1	novel		TCGA-OR-A5LL-01A-11D-A29I-10	TCGA-OR-A5LL-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9bfd4b2e-0577-4c94-8d6c-dafa9104b502	2d4f1606-9261-4ba8-96a9-ee307989af11	.	PHAX-90	NM_032177	exon2	c.G570C	p.E190D	GGAAGAGGAAAAT	.	295	23	85	1	.	85	85	0	0	0	C	125939735	G	C	125939735	3	2	54	1	0	0	0	0	1	0	0	0	11842	991	35	3	576	3	PHAX	5	125939735	Missense_Mutation	SNP	G	TCGA-OR-A5LL-01A-11D-A29I-10	62	125939735	54975525	34	11148			1	53		4	4	153	G		1.876047e-11
PHAX	51808	broad.mit.edu;bcgsc.ca	37	chr5	125939799	125939799	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0909090909090909	9	0.676513436209403	1.45897631779985	2.97198879551821	1.16295213737669	0.369849964277209	1	0	acaggctagggaacagaccaGaaatgaactataaaggtcga	11	7	0	3	novel		TCGA-OR-A5LL-01A-11D-A29I-10	TCGA-OR-A5LL-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9bfd4b2e-0577-4c94-8d6c-dafa9104b502	2d4f1606-9261-4ba8-96a9-ee307989af11	.	PHAX-90	NM_032177	exon2	c.G634C	p.E212Q	AGACCAGAAATGA	.	324	18	107	1	.	79	79	0	0	0	C	125939799	G	C	125939799	3	2	54	1	0	0	0	0	1	0	0	0	11842	943	33	3	640	3	PHAX	5	125939799	Missense_Mutation	SNP	G	TCGA-OR-A5LL-01A-11D-A29I-10	64	125939799	54975461	35	11149			1	53		4	4	153	G		1.876047e-11
PHAX	51808	broad.mit.edu;bcgsc.ca	37	chr5	125939825	125939825	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0909090909090909	9	0.676513436209403	1.45897631779985	2.97198879551821	1.16295213737669	0.369849964277209	1	0	aactataaaggtcgatacgaGatcacagcggaagattctca	9	8	2	2	novel		TCGA-OR-A5LL-01A-11D-A29I-10	TCGA-OR-A5LL-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9bfd4b2e-0577-4c94-8d6c-dafa9104b502	2d4f1606-9261-4ba8-96a9-ee307989af11	.	PHAX-90	NM_032177	exon2	c.G660A	p.E220E	ATACGAGATCACA	.	318	22	125	1	.	116	116	0	0	0	A	125939825	G	A	125939825	2	1	54	1	0	0	0	0	0	0	0	1	11842	933	33	3		3	PHAX	5	125939825	Silent	SNP	G	TCGA-OR-A5LL-01A-11D-A29I-10	26	125939825	54975435	36	11150			1	53		4	4	153	G		1.876047e-11
CDKN2AIPNL	91368	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr5	133745680	133745680	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	9	0.676513436209403	1.45897631779985	2.97198879551821	1.16295213737669	0.369849964277209	1	0	ttccatcaccttgtctaaaaGgtctttattgtaactgcaca	5	10	3	0	novel		TCGA-OR-A5LL-01A-11D-A29I-10	TCGA-OR-A5LL-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9bfd4b2e-0577-4c94-8d6c-dafa9104b502	2d4f1606-9261-4ba8-96a9-ee307989af11	.	CDKN2AIPNL-68	NM_080656	exon2	c.C253G	p.L85V	CTAAAAGGTCTTT	.	103	11	65	0	.	23	23	0	0	0	C	133745680	G	C	133745680	3	2	54	1	0	0	0	0	1	0	0	0	3169	1000	35	3	105	3	CDKN2AIPNL	5	133745680	Missense_Mutation	SNP	G	TCGA-OR-A5LL-01A-11D-A29I-10	7805855	133745680	47169580	37	11151										
KLHL3	26249	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	137056267	137056267	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	9	0.676513436209403	1.45897631779985	2.97198879551821	1.16295213737669	0.369849964277209	1	0	atcagagtctgggagctcagCttgacactgtgaacaggaag	13	8	3	3	novel		TCGA-OR-A5LL-01A-11D-A29I-10	TCGA-OR-A5LL-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9bfd4b2e-0577-4c94-8d6c-dafa9104b502	2d4f1606-9261-4ba8-96a9-ee307989af11	.	KLHL3-90	NM_017415	exon2	c.G21A	p.K7K	GCTCAGCTTGACA	.	90	13	97	0	.	0	0	0	0	0	T	137056267	C	T	137056267	2	4	54	1	0	0	0	0	0	0	0	1	8404	796	28	3		3	KLHL3	5	137056267	Silent	SNP	C	TCGA-OR-A5LL-01A-11D-A29I-10	3310587	137056267	43858993	38	11152										
PCDHGB1	56104	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	140731780	140731780	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	9	0.676513436209403	1.45897631779985	2.97198879551821	1.16295213737669	0.369849964277209	1	0	ggaggacagccgccactctcCgccaccgccacgctgcacct	10	20	1	0	novel		TCGA-OR-A5LL-01A-11D-A29I-10	TCGA-OR-A5LL-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9bfd4b2e-0577-4c94-8d6c-dafa9104b502	2d4f1606-9261-4ba8-96a9-ee307989af11	.	PCDHGB1-33	NM_018922	exon1	c.C1953T	p.S651S	ACTCTCCGCCACC	.	57	12	72	0	.	6	6	0	0	0	T	140731780	C	T	140731780	2	4	54	1	0	0	0	0	0	0	0	1	11591	639	23	1		1	PCDHGB1	5	140731780	Silent	SNP	C	TCGA-OR-A5LL-01A-11D-A29I-10	3675513	140731780	40183480	39	11153										
PCDHGB2	56103	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	140741378	140741378	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	9	0.676513436209403	1.45897631779985	2.97198879551821	1.16295213737669	0.369849964277209	1	0	gggcgacctcaatgacaatgCgccacgggtgctgtaccccg	13	14	1	1	novel		TCGA-OR-A5LL-01A-11D-A29I-10	TCGA-OR-A5LL-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9bfd4b2e-0577-4c94-8d6c-dafa9104b502	2d4f1606-9261-4ba8-96a9-ee307989af11	.	PCDHGB2-33	NM_018923	exon1	c.C1676T	p.A559V	ACAATGCGCCACG	.	113	17	134	1	.	1	1	0	0	0	T	140741378	C	T	140741378	3	4	54	1	0	0	0	0	1	0	0	0	11592	768	27	1	1678	1	PCDHGB2	5	140741378	Missense_Mutation	SNP	C	TCGA-OR-A5LL-01A-11D-A29I-10	9598	140741378	40173882	40	11154										
RASGEF1C	255426	bcgsc.ca	37	chr5	179563435	179563435	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	9	0.676513436209403	1.45897631779985	2.97198879551821	1.16295213737669	0.369849964277209	1	0	aggtgcccgatagtcgactcTtcctggaagtcccttgggaa	12	11	1	0	rs11546322	byfrequency	TCGA-OR-A5LL-01A-11D-A29I-10	TCGA-OR-A5LL-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9bfd4b2e-0577-4c94-8d6c-dafa9104b502	2d4f1606-9261-4ba8-96a9-ee307989af11	.	RASGEF1C-228	NM_175062	exon4	c.A381G	p.E127E	CGACTCTTCCTGG	.	314	11	280	1	T|0.588;C|0.412	0	0	0	0	0	C	179563435	T	C	179563435	2	2	54	1	0	0	0	0	0	0	0	1	13106	1606	56	4		4	RASGEF1C	5	179563435	Silent	SNP	T	TCGA-OR-A5LL-01A-11D-A29I-10	38822057	179563435	1351825	41	11155										
E2F3	1871	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	20488470	20488470	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	9	0.676513436209403	1.45897631779985	2.97198879551821	1.16295213737669	0.369849964277209	1	0	atgggaatatccctaaacccGcttccaaaggtaaaaactcc	6	12	0	0	rs147333935	byfrequency	TCGA-OR-A5LL-01A-11D-A29I-10	TCGA-OR-A5LL-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9bfd4b2e-0577-4c94-8d6c-dafa9104b502	2d4f1606-9261-4ba8-96a9-ee307989af11	.	E2F3-414	NM_001949	exon6	c.G1126A	p.A376T	AAACCCGCTTCCA	.	78	14	86	0	G|0.999;A|0.001	0	0	0	0	0	A	20488470	G	A	20488470	3	1	54	1	0	0	0	0	1	0	0	0	4879	1087	38	1	1148	1	E2F3	6	20488470	Missense_Mutation	SNP	G	TCGA-OR-A5LL-01A-11D-A29I-10		20488470	150626597	42	11156										
OR2B6	26212	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	27925596	27925596	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	9	0.676513436209403	1.45897631779985	2.97198879551821	1.16295213737669	0.369849964277209	1	0	gttatcttgtgttgagacaaCagcaaatgaggctgaactat	10	6	1	3	novel		TCGA-OR-A5LL-01A-11D-A29I-10	TCGA-OR-A5LL-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9bfd4b2e-0577-4c94-8d6c-dafa9104b502	2d4f1606-9261-4ba8-96a9-ee307989af11	.	OR2B6-69	NM_012367	exon1	c.C578T	p.T193I	AGACAACAGCAAA	.	129	54	177	0	.	0	0	0	0	0	T	27925596	C	T	27925596	3	4	54	1	0	0	0	0	1	0	0	0	11020	478	17	3	580	3	OR2B6	6	27925596	Missense_Mutation	SNP	C	TCGA-OR-A5LL-01A-11D-A29I-10	7437126	27925596	143189471	43	11157										
GRIK2	2898	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	102511871	102511871	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	9	0.676513436209403	1.45897631779985	2.97198879551821	1.16295213737669	0.369849964277209	1	0	gttagtgccaccataccatcCagacactgtttagtaatctt	6	11	1	1	novel		TCGA-OR-A5LL-01A-11D-A29I-10	TCGA-OR-A5LL-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9bfd4b2e-0577-4c94-8d6c-dafa9104b502	2d4f1606-9261-4ba8-96a9-ee307989af11	.	GRIK2-157	NM_175768	exon16	c.C2597A	p.P866Q	ACCATCCAGACAC	.	171	42	212	0	.	0	0	0	0	0	A	102511871	C	A	102511871	3	1	54	1	0	0	0	0	1	0	0	0	6795	594	21	3	2659	3	GRIK2	6	102511871	Missense_Mutation	SNP	C	TCGA-OR-A5LL-01A-11D-A29I-10	74586275	102511871	68603196	44	11158										
ESR1	2099	broad.mit.edu	37	chr6	152129382	152129382	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	9	0.676513436209403	1.45897631779985	2.97198879551821	1.16295213737669	0.369849964277209	1	0	gagcccgctgatgctactgcAcccgccgccgcagctgtcgc	12	18	0	1	novel		TCGA-OR-A5LL-01A-11D-A29I-10	TCGA-OR-A5LL-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9bfd4b2e-0577-4c94-8d6c-dafa9104b502	2d4f1606-9261-4ba8-96a9-ee307989af11	.	ESR1-1042	NM_000125	exon1	c.A335C	p.H112P	TACTGCACCCGCC	.	67	14	58	7	.	0	0	0	0	0	C	152129382	A	C	152129382	3	2	54	1	0	0	0	0	1	0	0	0	5269	159	6	5	337	5	ESR1	6	152129382	Missense_Mutation	SNP	A	TCGA-OR-A5LL-01A-11D-A29I-10	49617511	152129382	18985685	45	11159										
STK31	56164	bcgsc.ca	37	chr7	23811800	23811800	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	9	0.676513436209403	1.45897631779985	2.97198879551821	1.16295213737669	0.369849964277209	1	0	tattgaatatttaaataagaGtcccagtgtggatcacttgc	8	6	1	2	rs10247878	byfrequency	TCGA-OR-A5LL-01A-11D-A29I-10	TCGA-OR-A5LL-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9bfd4b2e-0577-4c94-8d6c-dafa9104b502	2d4f1606-9261-4ba8-96a9-ee307989af11	.	STK31-338	NM_031414	exon15	c.G1868T	p.S623I	ATAAGAGTCCCAG	.	93	5	99	0	G|0.876;T|0.124	0	0	0	0	0	T	23811800	G	T	23811800	3	4	54	1	0	0	0	0	1	0	0	0	15333	1029	36	3	1926	3	STK31	7	23811800	Missense_Mutation	SNP	G	TCGA-OR-A5LL-01A-11D-A29I-10		23811800	135326863	46	11160										
WNT2	7472	broad.mit.edu;bcgsc.ca	37	chr7	116937913	116937913	+	Frame_Shift_Del	DEL	C	C	-													0.0909090909090909	9	0.676513436209403	1.45897631779985	2.97198879551821	1.16295213737669	0.369849964277209	1	0	tggcacttgcactcttgtttCaagaaccgctttacagcctg					novel		TCGA-OR-A5LL-01A-11D-A29I-10	TCGA-OR-A5LL-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9bfd4b2e-0577-4c94-8d6c-dafa9104b502	2d4f1606-9261-4ba8-96a9-ee307989af11	.	WNT2-1011	NM_003391	exon4	c.606delG	p.L202fs	TTGTTTCAAGAAC	.	28	8	33	0	.	0	0	0	0	0	-	116937913	C	-	116937913	7	5	54	1	0	1	0	1	0	0	0	0	17424	825	29	0	484	0	WNT2	7	116937913	Frame_Shift_Del	DEL	C	TCGA-OR-A5LL-01A-11D-A29I-10	93126113	116937913	42200750	47	11161	124	2								
WNT2	7472	broad.mit.edu;bcgsc.ca	37	chr7	116937915	116937916	+	Frame_Shift_Del	DEL	AG	AG	-													0.0909090909090909	9	0.676513436209403	1.45897631779985	2.97198879551821	1.16295213737669	0.369849964277209	1	0	gcacttgcactcttgtttcaAgaaccgctttacagcctgcc					novel		TCGA-OR-A5LL-01A-11D-A29I-10	TCGA-OR-A5LL-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9bfd4b2e-0577-4c94-8d6c-dafa9104b502	2d4f1606-9261-4ba8-96a9-ee307989af11	.	WNT2-1011	NM_003391	exon4	c.603_604del	p.201_202del	GTTTCAAGAACCG	.	27	8	32	0	.	0	0	0	0	0	-	116937916	AG	-	116937915	7	5	54	1	0	1	0	1	0	0	0	0	17424	69	3	0	486	0	WNT2	7	116937915	Frame_Shift_Del	DEL	AG	TCGA-OR-A5LL-01A-11D-A29I-10	2	116937915	42200748	48	11162	124	2								
CLDN23	137075	hgsc.bcm.edu	37	chr8	8560536	8560536	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	9	0.676513436209403	1.45897631779985	2.97198879551821	1.16295213737669	0.369849964277209	1	0	gcagcgtcagcaccatccaaGtggagtggcccgagcccgac	13	15	1	0	rs12548737	byfrequency	TCGA-OR-A5LL-01A-11D-A29I-10	TCGA-OR-A5LL-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9bfd4b2e-0577-4c94-8d6c-dafa9104b502	2d4f1606-9261-4ba8-96a9-ee307989af11	.	.	NM_194284	exon1	c.G628A	p.V210M	ATCCAAGTGGAGT	.	6	6	2	0	G|0.907;A|0.093	2	0	2	0	0	A	8560536	G	A	8560536	3	1	54	1	0	0	0	0	1	0	0	0	3490	1029	36	3	630	3	CLDN23	8	8560536	Missense_Mutation	SNP	G	TCGA-OR-A5LL-01A-11D-A29I-10		8560536	137803486	49	11163										
DOCK5	80005	bcgsc.ca	37	chr8	25203011	25203013	+	In_Frame_Del	DEL	CCA	CCA	-													0.0909090909090909	9	0.676513436209403	1.45897631779985	2.97198879551821	1.16295213737669	0.369849964277209	1	0	agtgcagagaagtgctgctgCcactgctgacagaccagctc					novel		TCGA-OR-A5LL-01A-11D-A29I-10	TCGA-OR-A5LL-10A-01D-A29L-10	CCA	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9bfd4b2e-0577-4c94-8d6c-dafa9104b502	2d4f1606-9261-4ba8-96a9-ee307989af11	.	DOCK5-71	NM_024940	exon26	c.2638_2640del	p.880_880del	CTGCTGCCACTGC	.	23	4	63	0	.	0	0	0	0	0	-	25203013	CCA	-	25203011	7	5	54	1	0	1	0	1	0	0	0	0	4701	739	26	0	2740	0	DOCK5	8	25203011	In_Frame_Del	DEL	CCA	TCGA-OR-A5LL-01A-11D-A29I-10	16642475	25203011	121161011	50	11164										
ARMC1	55156	bcgsc.ca	37	chr8	66525548	66525548	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	9	0.676513436209403	1.45897631779985	2.97198879551821	1.16295213737669	0.369849964277209	1	0	tttgtagttcccagaaaaaaTtgagctttccttcgacgtga	8	8	0	3	rs11559265	byfrequency	TCGA-OR-A5LL-01A-11D-A29I-10	TCGA-OR-A5LL-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9bfd4b2e-0577-4c94-8d6c-dafa9104b502	2d4f1606-9261-4ba8-96a9-ee307989af11	.	ARMC1-91	NM_018120	exon4	c.A396G	p.Q132Q	AAAAAATTGAGCT	.	79	4	106	1	T|0.731;C|0.269	23	23	0	0	0	C	66525548	T	C	66525548	2	2	54	1	0	0	0	0	0	0	0	1	950	1490	52	4		4	ARMC1	8	66525548	Silent	SNP	T	TCGA-OR-A5LL-01A-11D-A29I-10	41322537	66525548	79838474	51	11165										
RGS22	26166	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr8	101016248	101016248	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0909090909090909	9	0.676513436209403	1.45897631779985	2.97198879551821	1.16295213737669	0.369849964277209	1	0	aaaatgcttgtattctgcagGaacattatcccaatattctg	6	8	2	0	novel		TCGA-OR-A5LL-01A-11D-A29I-10	TCGA-OR-A5LL-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9bfd4b2e-0577-4c94-8d6c-dafa9104b502	2d4f1606-9261-4ba8-96a9-ee307989af11	.	RGS22-140	NM_015668	exon17	c.C2533T	p.P845S	CTGCAGGAACATT	.	92	17	117	0	.	0	0	0	0	0	A	101016248	G	A	101016248	3	1	54	1	0	0	0	0	1	0	0	0	13340	1174	41	3	1305	3	RGS22	8	101016248	Missense_Mutation	SNP	G	TCGA-OR-A5LL-01A-11D-A29I-10	34490700	101016248	45347774	52	11166										
COL14A1	7373	broad.mit.edu	37	chr8	121344902	121344902	+	Splice_Site	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	9	0.676513436209403	1.45897631779985	2.97198879551821	1.16295213737669	0.369849964277209	1	0	attttcctacctctcttctaGggcattcctggcacccctgg	7	15	2	0	novel		TCGA-OR-A5LL-01A-11D-A29I-10	TCGA-OR-A5LL-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9bfd4b2e-0577-4c94-8d6c-dafa9104b502	2d4f1606-9261-4ba8-96a9-ee307989af11	.	COL14A1-543	NM_021110	exon42	c.4714-1G>T	.	CTTCTAGGGCATT	.	62	3	84	0	.	0	0	0	0	0	T	121344902	G	T	121344902	5	4	54	1	0	0	0	0	0	0	1	0	3677	1014	35	3	4875	3	COL14A1	8	121344902	Splice_Site	SNP	G	TCGA-OR-A5LL-01A-11D-A29I-10	20328654	121344902	25019120	53	11167										
KIAA1432	57589	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	5754924	5754924	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	9	0.676513436209403	1.45897631779985	2.97198879551821	1.16295213737669	0.369849964277209	1	0	tataacataaatgaccgtcaAgaagaggtaagttttttctc	7	6	2	3	novel		TCGA-OR-A5LL-01A-11D-A29I-10	TCGA-OR-A5LL-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9bfd4b2e-0577-4c94-8d6c-dafa9104b502	2d4f1606-9261-4ba8-96a9-ee307989af11	.	KIAA1432-90	NM_001135920	exon15	c.A1686G	p.Q562Q	CCGTCAAGAAGAG	.	26	6	17	0	.	0	0	0	0	0	G	5754924	A	G	5754924	2	3	54	1	0	0	0	0	0	0	0	1	8254	69	3	4		4	KIAA1432	9	5754924	Silent	SNP	A	TCGA-OR-A5LL-01A-11D-A29I-10		5754924	135458507	54	11168										
FRMPD1	22844	bcgsc.ca	37	chr9	37731007	37731007	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	9	0.676513436209403	1.45897631779985	2.97198879551821	1.16295213737669	0.369849964277209	1	0	gaaagggaggagtcacatgaCtaccgctgcctcttcagggt	13	10	3	1	rs2274324	byfrequency	TCGA-OR-A5LL-01A-11D-A29I-10	TCGA-OR-A5LL-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9bfd4b2e-0577-4c94-8d6c-dafa9104b502	2d4f1606-9261-4ba8-96a9-ee307989af11	.	FRMPD1-159	NM_014907	exon9	c.C765T	p.D255D	ACATGACTACCGC	.	52	4	59	0	C|0.942;T|0.058	0	0	0	0	0	T	37731007	C	T	37731007	2	4	54	1	0	0	0	0	0	0	0	1	6076	564	20	3		3	FRMPD1	9	37731007	Silent	SNP	C	TCGA-OR-A5LL-01A-11D-A29I-10	31976083	37731007	103482424	55	11169										
PSAT1	29968	broad.mit.edu	37	chr9	80919786	80919786	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	9	0.676513436209403	1.45897631779985	2.97198879551821	1.16295213737669	0.369849964277209	1	0	gtgacaggagcttggtcagcTaaggccgcagaagaagccaa	14	9	1	3	novel		TCGA-OR-A5LL-01A-11D-A29I-10	TCGA-OR-A5LL-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9bfd4b2e-0577-4c94-8d6c-dafa9104b502	2d4f1606-9261-4ba8-96a9-ee307989af11	.	PSAT1-91	NM_021154	exon4	c.T327G	p.A109A	GTCAGCTAAGGCC	.	84	8	121	1	.	84	83	1	0	0	G	80919786	T	G	80919786	2	3	54	1	0	0	0	0	0	0	0	1	12676	1509	53	5		5	PSAT1	9	80919786	Silent	SNP	T	TCGA-OR-A5LL-01A-11D-A29I-10	43188779	80919786	60293645	56	11170										
COL5A1	1289	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr9	137710730	137710730	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	9	0.676513436209403	1.45897631779985	2.97198879551821	1.16295213737669	0.369849964277209	1	0	caggatccccaggcccggacGgtccccccggccccatggtg	13	19	0	0	rs183114696		TCGA-OR-A5LL-01A-11D-A29I-10	TCGA-OR-A5LL-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9bfd4b2e-0577-4c94-8d6c-dafa9104b502	2d4f1606-9261-4ba8-96a9-ee307989af11	.	COL5A1-524	NM_000093	exon56	c.G4375A	p.G1459S	CCGGACGGTCCCC	.	70	8	56	0	G|0.999;A|0.000	2	1	1	0	0	A	137710730	G	A	137710730	3	1	54	1	0	0	0	0	1	0	0	0	3702	1116	39	1	4597	1	COL5A1	9	137710730	Missense_Mutation	SNP	G	TCGA-OR-A5LL-01A-11D-A29I-10	56790944	137710730	3502701	57	11171										
ECHDC3	79746	hgsc.bcm.edu;bcgsc.ca	37	chr10	11805375	11805375	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	9	0.676513436209403	1.45897631779985	2.97198879551821	1.16295213737669	0.369849964277209	1	0	tcgctgagccgtccggtggtGtccctgggcaaagccacctt	13	14	0	1	novel		TCGA-OR-A5LL-01A-11D-A29I-10	TCGA-OR-A5LL-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9bfd4b2e-0577-4c94-8d6c-dafa9104b502	2d4f1606-9261-4ba8-96a9-ee307989af11	.	ECHDC3-90	NM_024693	exon5	c.G744A	p.V248V	GGTGGTGTCCCTG	.	41	7	33	0	.	3	3	0	0	0	A	11805375	G	A	11805375	2	1	54	1	0	0	0	0	0	0	0	1	4906	1364	48	3		3	ECHDC3	10	11805375	Silent	SNP	G	TCGA-OR-A5LL-01A-11D-A29I-10		11805375	123729372	58	11172										
SLIT1	6585	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr10	98799839	98799839	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	9	0.676513436209403	1.45897631779985	2.97198879551821	1.16295213737669	0.369849964277209	1	0	caggcaggcgcactcctgtgGgcactgtgggcggggcaggc	19	12	0	0	novel		TCGA-OR-A5LL-01A-11D-A29I-10	TCGA-OR-A5LL-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9bfd4b2e-0577-4c94-8d6c-dafa9104b502	2d4f1606-9261-4ba8-96a9-ee307989af11	.	SLIT1-94	NM_003061	exon21	c.C2203T	p.P735S	CCTGTGGGCACTG	.	203	39	222	0	.	1	1	0	0	0	A	98799839	G	A	98799839	3	1	54	1	0	0	0	0	1	0	0	0	14774	1232	43	3	2469	3	SLIT1	10	98799839	Missense_Mutation	SNP	G	TCGA-OR-A5LL-01A-11D-A29I-10	86994464	98799839	36734908	59	11173										
PTPMT1	114971	broad.mit.edu	37	chr11	47587390	47587390	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	9	0.676513436209403	1.45897631779985	2.97198879551821	1.16295213737669	0.369849964277209	1	0	gggcccctgccccgtccccgCcgctccgtccctgtcgggcc	12	23	0	0	rs193125282	by1000genomes	TCGA-OR-A5LL-01A-11D-A29I-10	TCGA-OR-A5LL-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9bfd4b2e-0577-4c94-8d6c-dafa9104b502	2d4f1606-9261-4ba8-96a9-ee307989af11	.	PTPMT1-23	NM_001143984	exon1	c.C216T	p.R72R	TCCCCGCCGCTCC	.	45	8	34	1	C|0.998;T|0.002	6	5	1	0	0	T	47587390	C	T	47587390	2	4	54	1	0	0	0	0	0	0	0	1	12811	726	26	3		3	PTPMT1	11	47587390	Silent	SNP	C	TCGA-OR-A5LL-01A-11D-A29I-10		47587390	87419126	60	11174										
PC	5091	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr11	66636324	66636324	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	9	0.676513436209403	1.45897631779985	2.97198879551821	1.16295213737669	0.369849964277209	1	0	cgcccacactcactcggtgaTctcctctgtgaccgtgtgct	9	16	3	2	novel		TCGA-OR-A5LL-01A-11D-A29I-10	TCGA-OR-A5LL-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9bfd4b2e-0577-4c94-8d6c-dafa9104b502	2d4f1606-9261-4ba8-96a9-ee307989af11	.	PC-228	NM_000920	exon9	c.A1015G	p.I339V	CGGTGATCTCCTC	.	79	7	100	0	.	0	0	0	0	0	C	66636324	T	C	66636324	3	2	54	1	0	0	0	0	1	0	0	0	11526	1435	50	4	2577	4	PC	11	66636324	Missense_Mutation	SNP	T	TCGA-OR-A5LL-01A-11D-A29I-10	19048934	66636324	68370192	61	11175										
MRPS35	60488	bcgsc.ca	37	chr12	27867727	27867727	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	9	0.676513436209403	1.45897631779985	2.97198879551821	1.16295213737669	0.369849964277209	1	0	gtacagcggaaagaacacccGgaaatgaaaggccaccaaga	11	10	0	3	rs1127787	byfrequency	TCGA-OR-A5LL-01A-11D-A29I-10	TCGA-OR-A5LL-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9bfd4b2e-0577-4c94-8d6c-dafa9104b502	2d4f1606-9261-4ba8-96a9-ee307989af11	.	MRPS35-90	NM_001190864	exon2	c.G127A	p.G43R	ACACCCGGAAATG	.	97	6	103	1	G|0.873;A|0.127	0	0	0	0	0	A	27867727	G	A	27867727	3	1	54	1	0	0	0	0	1	0	0	0	9872	1117	39	1	133	1	MRPS35	12	27867727	Missense_Mutation	SNP	G	TCGA-OR-A5LL-01A-11D-A29I-10		27867727	105984168	62	11176										
KRT1	3848	hgsc.bcm.edu	37	chr12	53069243	53069243	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	9	0.676513436209403	1.45897631779985	2.97198879551821	1.16295213737669	0.369849964277209	1	0	acctccggagccgtagctgcTacctccggagccatagctgc	11	16	0	0	rs77846840		TCGA-OR-A5LL-01A-11D-A29I-10	TCGA-OR-A5LL-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9bfd4b2e-0577-4c94-8d6c-dafa9104b502	2d4f1606-9261-4ba8-96a9-ee307989af11	.	KRT1-92	NM_006121	exon9	c.A1669G	p.S557G	AGCTGCTACCTCC	.	17	4	19	0	T|0.500;C|0.500	0	0	0	0	0	C	53069243	T	C	53069243	3	2	54	1	0	0	0	0	1	0	0	0	8468	1522	53	4	269	4	KRT1	12	53069243	Missense_Mutation	SNP	T	TCGA-OR-A5LL-01A-11D-A29I-10	25201516	53069243	80782652	63	11177										
DNAJC14	85406	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr12	56215846	56215846	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	9	0.676513436209403	1.45897631779985	2.97198879551821	1.16295213737669	0.369849964277209	1	0	tgctgttgggcttagaggctGcagcggctccaggggcaggc	18	10	0	1	novel		TCGA-OR-A5LL-01A-11D-A29I-10	TCGA-OR-A5LL-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9bfd4b2e-0577-4c94-8d6c-dafa9104b502	2d4f1606-9261-4ba8-96a9-ee307989af11	.	DNAJC14-229	NM_032364	exon7	c.C2024T	p.A675V	GAGGCTGCAGCGG	.	66	31	85	0	.	16	8	8	0	0	A	56215846	G	A	56215846	3	1	54	1	0	0	0	0	1	0	0	0	4644	1319	46	3	88	3	DNAJC14	12	56215846	Missense_Mutation	SNP	G	TCGA-OR-A5LL-01A-11D-A29I-10	3146603	56215846	77636049	64	11178										
MMP19	4327	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	56231788	56231788	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	9	0.676513436209403	1.45897631779985	2.97198879551821	1.16295213737669	0.369849964277209	1	0	aagcataggtcttcccacggGgccctgagcgtaatggtgtg	14	10	1	1	novel		TCGA-OR-A5LL-01A-11D-A29I-10	TCGA-OR-A5LL-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9bfd4b2e-0577-4c94-8d6c-dafa9104b502	2d4f1606-9261-4ba8-96a9-ee307989af11	.	MMP19-227	NM_002429	exon7	c.C899T	p.P300L	CCACGGGGCCCTG	.	56	15	87	0	.	0	0	0	0	0	A	56231788	G	A	56231788	3	1	54	1	0	0	0	0	1	0	0	0	9685	1232	43	3	639	3	MMP19	12	56231788	Missense_Mutation	SNP	G	TCGA-OR-A5LL-01A-11D-A29I-10	15942	56231788	77620107	65	11179										
MBD6	114785	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr12	57922471	57922471	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	9	0.676513436209403	1.45897631779985	2.97198879551821	1.16295213737669	0.369849964277209	1	0	gcccccgggagtagtcagaaAgtctcgtcgtggccgtagga	15	11	2	1	novel		TCGA-OR-A5LL-01A-11D-A29I-10	TCGA-OR-A5LL-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9bfd4b2e-0577-4c94-8d6c-dafa9104b502	2d4f1606-9261-4ba8-96a9-ee307989af11	.	MBD6-516	NM_052897	exon11	c.A2843C	p.K948T	TCAGAAAGTCTCG	.	88	8	116	0	.	31	26	5	0	0	C	57922471	A	C	57922471	3	2	54	1	0	0	0	0	1	0	0	0	9376	72	3	5	2877	5	MBD6	12	57922471	Missense_Mutation	SNP	A	TCGA-OR-A5LL-01A-11D-A29I-10	1690683	57922471	75929424	66	11180										
WIF1	11197	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr12	65448919	65448919	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	9	0.676513436209403	1.45897631779985	2.97198879551821	1.16295213737669	0.369849964277209	1	0	tttattgcagtgtcttccatGccaaccttcttgacattggc	7	11	2	1	novel		TCGA-OR-A5LL-01A-11D-A29I-10	TCGA-OR-A5LL-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9bfd4b2e-0577-4c94-8d6c-dafa9104b502	2d4f1606-9261-4ba8-96a9-ee307989af11	.	WIF1-1110	NM_007191	exon9	c.C997A	p.H333N	TTCCATGCCAACC	.	68	6	58	0	.	0	0	0	0	0	T	65448919	G	T	65448919	3	4	54	1	0	0	0	0	1	0	0	0	17404	1319	46	3	150	3	WIF1	12	65448919	Missense_Mutation	SNP	G	TCGA-OR-A5LL-01A-11D-A29I-10	7526448	65448919	68402976	67	11181										
ERCC5	2073	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr13	103498624	103498624	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	9	0.676513436209403	1.45897631779985	2.97198879551821	1.16295213737669	0.369849964277209	1	0	acgcagccgcctcatgggggTccaggggctctggaagctgc	16	13	2	0	novel		TCGA-OR-A5LL-01A-11D-A29I-10	TCGA-OR-A5LL-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9bfd4b2e-0577-4c94-8d6c-dafa9104b502	2d4f1606-9261-4ba8-96a9-ee307989af11	.	ERCC5-689	NM_000123	exon1	c.T8A	p.V3D	TGGGGGTCCAGGG	.	22	14	32	0	.	8	3	5	0	0	A	103498624	T	A	103498624	3	1	54	1	0	0	0	0	1	0	0	0	5229	1667	58	5	10	5	ERCC5	13	103498624	Missense_Mutation	SNP	T	TCGA-OR-A5LL-01A-11D-A29I-10		103498624	11671254	68	11182										
LRP10	26020	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	23345363	23345363	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	9	0.676513436209403	1.45897631779985	2.97198879551821	1.16295213737669	0.369849964277209	1	0	tgtcggcattgccagcctggCaatttccgatgccgggacga	13	12	0	0	novel		TCGA-OR-A5LL-01A-11D-A29I-10	TCGA-OR-A5LL-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9bfd4b2e-0577-4c94-8d6c-dafa9104b502	2d4f1606-9261-4ba8-96a9-ee307989af11	.	LRP10-90	NM_014045	exon5	c.C1206T	p.G402G	GCCTGGCAATTTC	.	71	9	68	0	.	77	68	9	0	0	T	23345363	C	T	23345363	2	4	54	1	0	0	0	0	0	0	0	1	8979	697	25	3		3	LRP10	14	23345363	Silent	SNP	C	TCGA-OR-A5LL-01A-11D-A29I-10		23345363	84004177	69	11183										
EXOC5	10640	bcgsc.ca	37	chr14	57714427	57714427	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	9	0.676513436209403	1.45897631779985	2.97198879551821	1.16295213737669	0.369849964277209	1	0	atattcatctgccacaaaagGctcctagtttacaaaaaaat	4	9	2	0	novel		TCGA-OR-A5LL-01A-11D-A29I-10	TCGA-OR-A5LL-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9bfd4b2e-0577-4c94-8d6c-dafa9104b502	2d4f1606-9261-4ba8-96a9-ee307989af11	.	EXOC5-137	NM_006544	exon2	c.C31A	p.P11T	CAAAAGGCTCCTA	.	135	5	131	0	.	0	0	0	0	0	T	57714427	G	T	57714427	3	4	54	1	0	0	0	0	1	0	0	0	5320	1203	42	3	2163	3	EXOC5	14	57714427	Missense_Mutation	SNP	G	TCGA-OR-A5LL-01A-11D-A29I-10	34369064	57714427	49635113	70	11184										
MTHFD1	4522	broad.mit.edu	37	chr14	64884686	64884686	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	9	0.676513436209403	1.45897631779985	2.97198879551821	1.16295213737669	0.369849964277209	1	0	cgatgcatgacttgcttctgTggaacaatgccacagtgacc	10	11	1	2	novel		TCGA-OR-A5LL-01A-11D-A29I-10	TCGA-OR-A5LL-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9bfd4b2e-0577-4c94-8d6c-dafa9104b502	2d4f1606-9261-4ba8-96a9-ee307989af11	.	MTHFD1-92	NM_005956	exon7	c.T559G	p.W187G	CTTCTGTGGAACA	.	69	6	86	1	.	42	42	0	0	0	G	64884686	T	G	64884686	3	3	54	1	0	0	0	0	1	0	0	0	9955	1696	59	5	585	5	MTHFD1	14	64884686	Missense_Mutation	SNP	T	TCGA-OR-A5LL-01A-11D-A29I-10	7170259	64884686	42464854	71	11185										
ADAM21	8747	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	70926008	70926008	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	9	0.676513436209403	1.45897631779985	2.97198879551821	1.16295213737669	0.369849964277209	1	0	ggggtattgactatcatttaAggatgaacatatctgacatt	9	5	2	3	novel		TCGA-OR-A5LL-01A-11D-A29I-10	TCGA-OR-A5LL-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9bfd4b2e-0577-4c94-8d6c-dafa9104b502	2d4f1606-9261-4ba8-96a9-ee307989af11	.	ADAM21-92	NM_003813	exon2	c.A1792C	p.R598R	CATTTAAGGATGA	.	313	146	363	1	.	0	0	0	0	0	C	70926008	A	C	70926008	2	2	54	1	0	0	0	0	0	0	0	1	243	63	3	5		5	ADAM21	14	70926008	Silent	SNP	A	TCGA-OR-A5LL-01A-11D-A29I-10	6041322	70926008	36423532	72	11186										
FAM161B	145483	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr14	74411292	74411292	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	9	0.676513436209403	1.45897631779985	2.97198879551821	1.16295213737669	0.369849964277209	1	0	ggtagaggggcaggtagacaTgtgcaggcacaggctgtgcc	18	8	0	2	novel		TCGA-OR-A5LL-01A-11D-A29I-10	TCGA-OR-A5LL-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9bfd4b2e-0577-4c94-8d6c-dafa9104b502	2d4f1606-9261-4ba8-96a9-ee307989af11	.	FAM161B-91	NM_152445	exon3	c.A860T	p.H287L	TAGACATGTGCAG	.	65	27	79	0	.	3	1	2	0	0	A	74411292	T	A	74411292	3	1	54	1	0	0	0	0	1	0	0	0	5489	1464	51	5	1300	5	FAM161B	14	74411292	Missense_Mutation	SNP	T	TCGA-OR-A5LL-01A-11D-A29I-10	3485284	74411292	32938248	73	11187										
CEP152	22995	hgsc.bcm.edu	37	chr15	49034286	49034286	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0909090909090909	9	0.676513436209403	1.45897631779985	2.97198879551821	1.16295213737669	0.369849964277209	1	0	cttactctcctgaatataacGaagcatgtcacctataggga	7	10	2	1	novel		TCGA-OR-A5LL-01A-11D-A29I-10	TCGA-OR-A5LL-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9bfd4b2e-0577-4c94-8d6c-dafa9104b502	2d4f1606-9261-4ba8-96a9-ee307989af11	.	CEP152-70	NM_001194998	exon25	c.C3847A	p.R1283S	TATAACGAAGCAT	.	75	4	66	0	.	0	0	0	0	0	T	49034286	G	T	49034286	3	4	54	1	0	0	0	0	1	0	0	0	3254	1058	37	2	1297	2	CEP152	15	49034286	Missense_Mutation	SNP	G	TCGA-OR-A5LL-01A-11D-A29I-10		49034286	53497106	74	11188										
PML	5371	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	74335395	74335395	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	9	0.676513436209403	1.45897631779985	2.97198879551821	1.16295213737669	0.369849964277209	1	0	cagctggaaggccccagcacCctcagggtcctggacgagaa	13	14	1	1	novel		TCGA-OR-A5LL-01A-11D-A29I-10	TCGA-OR-A5LL-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9bfd4b2e-0577-4c94-8d6c-dafa9104b502	2d4f1606-9261-4ba8-96a9-ee307989af11	.	PML-1083	NM_002675	exon8	c.C1776T	p.T592T	CAGCACCCTCAGG	.	75	9	94	0	.	1	0	1	0	0	T	74335395	C	T	74335395	2	4	54	1	0	0	0	0	0	0	0	1	12164	610	22	3		3	PML	15	74335395	Silent	SNP	C	TCGA-OR-A5LL-01A-11D-A29I-10	25301109	74335395	28195997	75	11189										
LRRK1	79705	broad.mit.edu	37	chr15	101528910	101528910	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	9	0.676513436209403	1.45897631779985	2.97198879551821	1.16295213737669	0.369849964277209	1	0	agcgagggcacctgggggttGtgaagctcctggtcctgacg	17	10	0	2	novel		TCGA-OR-A5LL-01A-11D-A29I-10	TCGA-OR-A5LL-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9bfd4b2e-0577-4c94-8d6c-dafa9104b502	2d4f1606-9261-4ba8-96a9-ee307989af11	.	LRRK1-602	NM_024652	exon5	c.G505T	p.V169L	GGGGTTGTGAAGC	.	52	3	82	0	.	0	0	0	0	0	T	101528910	G	T	101528910	3	4	54	1	0	0	0	0	1	0	0	0	9059	1377	48	3	519	3	LRRK1	15	101528910	Missense_Mutation	SNP	G	TCGA-OR-A5LL-01A-11D-A29I-10	27193515	101528910	1002482	76	11190										
CCNF	899	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	2506732	2506732	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	9	0.676513436209403	1.45897631779985	2.97198879551821	1.16295213737669	0.369849964277209	1	0	acccctggtccgcaccagccGggagccagggaaggacgtca	14	15	1	0	rs148419125	byfrequency	TCGA-OR-A5LL-01A-11D-A29I-10	TCGA-OR-A5LL-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9bfd4b2e-0577-4c94-8d6c-dafa9104b502	2d4f1606-9261-4ba8-96a9-ee307989af11	.	CCNF-658	NM_001761	exon17	c.G2072A	p.R691Q	CCAGCCGGGAGCC	.	145	31	127	1	G|1.000;A|0.000	2	2	0	0	0	A	2506732	G	A	2506732	3	1	54	1	0	0	0	0	1	0	0	0	2928	1116	39	1	2138	1	CCNF	16	2506732	Missense_Mutation	SNP	G	TCGA-OR-A5LL-01A-11D-A29I-10		2506732	87848021	77	11191										
DNAH3	55567	broad.mit.edu	37	chr16	20966303	20966303	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	9	0.676513436209403	1.45897631779985	2.97198879551821	1.16295213737669	0.369849964277209	1	0	ggcccggagccctttgggggGctcattggtcattttgattc	14	10	2	1	rs148915896	alternate_allele	TCGA-OR-A5LL-01A-11D-A29I-10	TCGA-OR-A5LL-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9bfd4b2e-0577-4c94-8d6c-dafa9104b502	2d4f1606-9261-4ba8-96a9-ee307989af11	.	DNAH3-167	NM_017539	exon55	c.C10903A	p.P3635T	TGGGGGGCTCATT	.	70	3	60	0	G|1.000;A|0.000	0	0	0	0	0	T	20966303	G	T	20966303	3	4	54	1	0	0	0	0	1	0	0	0	4614	1203	42	3	1478	3	DNAH3	16	20966303	Missense_Mutation	SNP	G	TCGA-OR-A5LL-01A-11D-A29I-10	18459571	20966303	69388450	78	11192										
ZFPM1	161882	broad.mit.edu	37	chr16	88599696	88599697	+	Frame_Shift_Del	DEL	GA	GA	-													0.0909090909090909	9	0.676513436209403	1.45897631779985	2.97198879551821	1.16295213737669	0.369849964277209	1	0	ccaacggagaggccagagcgGagcctctggcccagaatgga					rs67549438	alternate_allele	TCGA-OR-A5LL-01A-11D-A29I-10	TCGA-OR-A5LL-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9bfd4b2e-0577-4c94-8d6c-dafa9104b502	2d4f1606-9261-4ba8-96a9-ee307989af11	.	ZFPM1-90	NM_153813	exon10	c.1330_1331del	p.444_444del	AGAGCGGAGCCTC	.	15	9	5	0	.	0	0	0	0	0	-	88599697	GA	-	88599696	7	5	54	1	0	1	0	1	0	0	0	0	17694	1175	41	0	1368	0	ZFPM1	16	88599696	Frame_Shift_Del	DEL	GA	TCGA-OR-A5LL-01A-11D-A29I-10	67633393	88599696	1755057	79	11193										
NLRP1	22861	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	5424256	5424256	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	9	0.676513436209403	1.45897631779985	2.97198879551821	1.16295213737669	0.369849964277209	1	0	cagacacagtgtaacgacagCccatataaagtggggtcagc	11	10	1	1	novel		TCGA-OR-A5LL-01A-11D-A29I-10	TCGA-OR-A5LL-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9bfd4b2e-0577-4c94-8d6c-dafa9104b502	2d4f1606-9261-4ba8-96a9-ee307989af11	.	NLRP1-274	NM_001033053	exon14	c.G3872A	p.G1291D	CGACAGCCCATAT	.	24	21	46	0	.	0	0	0	0	0	T	5424256	C	T	5424256	3	4	54	1	0	0	0	0	1	0	0	0	10500	739	26	3	640	3	NLRP1	17	5424256	Missense_Mutation	SNP	C	TCGA-OR-A5LL-01A-11D-A29I-10		5424256	75770954	80	11194										
MFSD6L	162387	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	8702218	8702218	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	9	0.676513436209403	1.45897631779985	2.97198879551821	1.16295213737669	0.369849964277209	1	0	tcagaagcgctctccttttcCggtagcttttggccaggaag	11	11	2	1	rs111726322	byfrequency;alternate_allele	TCGA-OR-A5LL-01A-11D-A29I-10	TCGA-OR-A5LL-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9bfd4b2e-0577-4c94-8d6c-dafa9104b502	2d4f1606-9261-4ba8-96a9-ee307989af11	.	MFSD6L-90	NM_152599	exon1	c.G221A	p.R74Q	CTTTTCCGGTAGC	.	67	20	83	0	C|0.986;A|0.014	0	0	0	0	0	T	8702218	C	T	8702218	3	4	54	1	0	0	0	0	1	0	0	0	9564	652	23	1	1543	1	MFSD6L	17	8702218	Missense_Mutation	SNP	C	TCGA-OR-A5LL-01A-11D-A29I-10	3277962	8702218	72492992	81	11195										
MYH3	4621	ucsc.edu;bcgsc.ca	37	chr17	10551910	10551910	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	9	0.676513436209403	1.45897631779985	2.97198879551821	1.16295213737669	0.369849964277209	1	0	tcattcctcacagtcttggcGttcccaaaggcctccagcag	8	15	3	0	rs16943604	byfrequency	TCGA-OR-A5LL-01A-11D-A29I-10	TCGA-OR-A5LL-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9bfd4b2e-0577-4c94-8d6c-dafa9104b502	2d4f1606-9261-4ba8-96a9-ee307989af11	.	MYH3-95	NM_002470	exon8	c.C699T	p.N233N	CTTGGCGTTCCCA	.	212	45	213	3	G|0.987;A|0.013	0	0	0	0	0	A	10551910	G	A	10551910	2	1	54	1	0	0	0	0	0	0	0	1	10064	1136	40	1		1	MYH3	17	10551910	Silent	SNP	G	TCGA-OR-A5LL-01A-11D-A29I-10	1849692	10551910	70643300	82	11196										
RAI1	10743	broad.mit.edu	37	chr17	17700826	17700826	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	9	0.676513436209403	1.45897631779985	2.97198879551821	1.16295213737669	0.369849964277209	1	0	cctgccagccccagacaaggGcacagaaacagccaggccac	10	17	0	2	novel		TCGA-OR-A5LL-01A-11D-A29I-10	TCGA-OR-A5LL-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9bfd4b2e-0577-4c94-8d6c-dafa9104b502	2d4f1606-9261-4ba8-96a9-ee307989af11	.	RAI1-91	NM_030665	exon3	c.G4564T	p.A1522S	ACAAGGGCACAGA	.	99	3	132	0	.	16	16	0	0	0	T	17700826	G	T	17700826	3	4	54	1	0	0	0	0	1	0	0	0	13042	1203	42	3	4566	3	RAI1	17	17700826	Missense_Mutation	SNP	G	TCGA-OR-A5LL-01A-11D-A29I-10	7148916	17700826	63494384	83	11197										
CD300A	11314	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	72470793	72470793	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	9	0.676513436209403	1.45897631779985	2.97198879551821	1.16295213737669	0.369849964277209	1	0	ccacccacagtgccagcatcCaggaggaaactgaggaggtg	13	12	0	1	novel		TCGA-OR-A5LL-01A-11D-A29I-10	TCGA-OR-A5LL-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9bfd4b2e-0577-4c94-8d6c-dafa9104b502	2d4f1606-9261-4ba8-96a9-ee307989af11	.	CD300A-92	NM_007261	exon3	c.C502A	p.Q168K	AGCATCCAGGAGG	.	135	25	170	0	.	0	0	0	0	0	A	72470793	C	A	72470793	3	1	54	1	0	0	0	0	1	0	0	0	3002	595	21	3	512	3	CD300A	17	72470793	Missense_Mutation	SNP	C	TCGA-OR-A5LL-01A-11D-A29I-10	54769967	72470793	8724417	84	11198										
LONP1	9361	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	5707755	5707755	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	9	0.676513436209403	1.45897631779985	2.97198879551821	1.16295213737669	0.369849964277209	1	0	ctcatgggactcggccccggTgagcgcggcgcccatgtcgc	15	16	1	1	novel		TCGA-OR-A5LL-01A-11D-A29I-10	TCGA-OR-A5LL-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9bfd4b2e-0577-4c94-8d6c-dafa9104b502	2d4f1606-9261-4ba8-96a9-ee307989af11	.	LONP1-91	NM_004793	exon6	c.T1015C	p.F339L	CCCCGGTGAGCGC	.	158	26	203	1	.	117	85	32	0	0	G	5707755	T	G	5707755	3	3	54	1	0	0	0	0	1	0	0	0	8919	1696	59	5	1916	5	LONP1	19	5707755	Missense_Mutation	SNP	T	TCGA-OR-A5LL-01A-11D-A29I-10		5707755	53421228	85	11199										
QTRT1	81890	hgsc.bcm.edu;broad.mit.edu	37	chr19	10823651	10823651	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	9	0.676513436209403	1.45897631779985	2.97198879551821	1.16295213737669	0.369849964277209	1	0	acagccgcgccttcctgcacGcactgctgcacagtgacaac	9	17	0	1	novel		TCGA-OR-A5LL-01A-11D-A29I-10	TCGA-OR-A5LL-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9bfd4b2e-0577-4c94-8d6c-dafa9104b502	2d4f1606-9261-4ba8-96a9-ee307989af11	.	QTRT1-91	NM_031209	exon9	c.G994A	p.A332T	CTGCACGCACTGC	.	58	4	87	0	.	53	51	2	0	0	A	10823651	G	A	10823651	3	1	54	1	0	0	0	0	1	0	0	0	12920	1087	38	1	1028	1	QTRT1	19	10823651	Missense_Mutation	SNP	G	TCGA-OR-A5LL-01A-11D-A29I-10	5115896	10823651	48305332	86	11200										
CCDC105	126402	hgsc.bcm.edu	37	chr19	15133926	15133926	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	9	0.676513436209403	1.45897631779985	2.97198879551821	1.16295213737669	0.369849964277209	1	0	gcagcaagagcagcgcggacCcctagtgaccccagcgtccc	12	17	0	2	rs8112667	byfrequency	TCGA-OR-A5LL-01A-11D-A29I-10	TCGA-OR-A5LL-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9bfd4b2e-0577-4c94-8d6c-dafa9104b502	2d4f1606-9261-4ba8-96a9-ee307989af11	.	CCDC105-91	NM_173482	exon7	c.C1495A	p.P499T	GCGGACCCCTAGT	.	10	5	1	0	C|0.671;A|0.329	0	0	0	0	0	A	15133926	C	A	15133926	3	1	54	1	0	0	0	0	1	0	0	0	2746	623	22	3	1521	3	CCDC105	19	15133926	Missense_Mutation	SNP	C	TCGA-OR-A5LL-01A-11D-A29I-10	4310275	15133926	43995057	87	11201										
UPF1	5976	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	18966869	18966869	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	9	0.676513436209403	1.45897631779985	2.97198879551821	1.16295213737669	0.369849964277209	1	0	tccccggtgtcttttctggcCctgcacaaccagatcaggaa	9	14	3	1	novel		TCGA-OR-A5LL-01A-11D-A29I-10	TCGA-OR-A5LL-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9bfd4b2e-0577-4c94-8d6c-dafa9104b502	2d4f1606-9261-4ba8-96a9-ee307989af11	.	UPF1-91	NM_002911	exon12	c.C1680G	p.A560A	TCTGGCCCTGCAC	.	119	24	127	0	.	34	26	8	0	0	G	18966869	C	G	18966869	2	3	54	1	0	0	0	0	0	0	0	1	17041	610	22	3		3	UPF1	19	18966869	Silent	SNP	C	TCGA-OR-A5LL-01A-11D-A29I-10	3832943	18966869	40162114	88	11202										
TFAP2C	7022	broad.mit.edu	37	chr20	55206414	55206414	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	9	0.676513436209403	1.45897631779985	2.97198879551821	1.16295213737669	0.369849964277209	1	0	cccctccctaccagcagctgGcctactcccagtcggccgac	8	21	0	0	novel		TCGA-OR-A5LL-01A-11D-A29I-10	TCGA-OR-A5LL-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9bfd4b2e-0577-4c94-8d6c-dafa9104b502	2d4f1606-9261-4ba8-96a9-ee307989af11	.	TFAP2C-514	NM_003222	exon2	c.G202A	p.A68T	CAGCTGGCCTACT	.	75	4	73	0	.	1	1	0	0	0	A	55206414	G	A	55206414	3	1	54	1	0	0	0	0	1	0	0	0	15826	1203	42	3	208	3	TFAP2C	20	55206414	Missense_Mutation	SNP	G	TCGA-OR-A5LL-01A-11D-A29I-10		55206414	7819106	89	11203										
CTCFL	140690	hgsc.bcm.edu;broad.mit.edu	37	chr20	56090847	56090847	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	9	0.676513436209403	1.45897631779985	2.97198879551821	1.16295213737669	0.369849964277209	1	0	actggcaacactgaaaggggCgctccccagtgtgggatcgg	15	11	0	1	novel		TCGA-OR-A5LL-01A-11D-A29I-10	TCGA-OR-A5LL-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9bfd4b2e-0577-4c94-8d6c-dafa9104b502	2d4f1606-9261-4ba8-96a9-ee307989af11	.	CTCFL-292	NM_001269044	exon5	c.G1103A	p.R368H	AAGGGGCGCTCCC	.	44	5	39	0	.	0	0	0	0	0	T	56090847	C	T	56090847	3	4	54	1	0	0	0	0	1	0	0	0	4007	768	27	1	912	1	CTCFL	20	56090847	Missense_Mutation	SNP	C	TCGA-OR-A5LL-01A-11D-A29I-10	884433	56090847	6934673	90	11204										
CDH4	1002	broad.mit.edu	37	chr20	60348208	60348208	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	9	0.676513436209403	1.45897631779985	2.97198879551821	1.16295213737669	0.369849964277209	1	0	atcaacgtgcccgagaactcGcgcgggcccttcccgcagca	11	17	1	1	novel		TCGA-OR-A5LL-01A-11D-A29I-10	TCGA-OR-A5LL-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9bfd4b2e-0577-4c94-8d6c-dafa9104b502	2d4f1606-9261-4ba8-96a9-ee307989af11	.	CDH4-282	NM_001794	exon4	c.G546A	p.S182S	GAACTCGCGCGGG	.	104	4	76	0	.	0	0	0	0	0	A	60348208	G	A	60348208	2	1	54	1	0	0	0	0	0	0	0	1	3118	1074	38	1		1	CDH4	20	60348208	Silent	SNP	G	TCGA-OR-A5LL-01A-11D-A29I-10	4257361	60348208	2677312	91	11205										
OLIG2	10215	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr21	34399459	34399459	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0909090909090909	9	0.676513436209403	1.45897631779985	2.97198879551821	1.16295213737669	0.369849964277209	1	0	ctgcgtcgtccaccaagaagGacaagaagcaaatgacagag	11	10	0	4	novel		TCGA-OR-A5LL-01A-11D-A29I-10	TCGA-OR-A5LL-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9bfd4b2e-0577-4c94-8d6c-dafa9104b502	2d4f1606-9261-4ba8-96a9-ee307989af11	.	OLIG2-629	NM_005806	exon2	c.G289A	p.D97N	AAGAAGGACAAGA	.	132	25	155	0	.	0	0	0	0	0	A	34399459	G	A	34399459	3	1	54	1	0	0	0	0	1	0	0	0	10890	1174	41	3	291	3	OLIG2	21	34399459	Missense_Mutation	SNP	G	TCGA-OR-A5LL-01A-11D-A29I-10		34399459	13730436	92	11206										
NEFH	4744	ucsc.edu	37	chr22	29885594	29885594	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	9	0.676513436209403	1.45897631779985	2.97198879551821	1.16295213737669	0.369849964277209	1	0	cctgagaaggccaagtccccAgagaaggaagaggccaagtc	13	11	0	3	rs79235463	byfrequency	TCGA-OR-A5LL-01A-11D-A29I-10	TCGA-OR-A5LL-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9bfd4b2e-0577-4c94-8d6c-dafa9104b502	2d4f1606-9261-4ba8-96a9-ee307989af11	.	NEFH-90	NM_021076	exon4	c.A1965T	p.P655P	GTCCCCAGAGAAG	.	205	37	263	1	A|0.500;T|0.500	7	7	0	0	0	T	29885594	A	T	29885594	2	4	54	1	0	0	0	0	0	0	0	1	10343	175	7	5		5	NEFH	22	29885594	Silent	SNP	A	TCGA-OR-A5LL-01A-11D-A29I-10		29885594	21418972	93	11207										
RABL2B	11158	hgsc.bcm.edu;bcgsc.ca	37	chr22	51208398	51208399	+	Frame_Shift_Ins	INS	-	-	A													0.0909090909090909	9	0.676513436209403	1.45897631779985	2.97198879551821	1.16295213737669	0.369849964277209	1	0	ctcccgaagctctgtataccINSaggtgctcaggttcctatag					novel		TCGA-OR-A5LL-01A-11D-A29I-10	TCGA-OR-A5LL-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9bfd4b2e-0577-4c94-8d6c-dafa9104b502	2d4f1606-9261-4ba8-96a9-ee307989af11	.	RABL2B-131	NM_001130920	exon7	c.344_345insT	p.W115fs	GTATACCAGGTGC	.	116	30	185	0	.	0	0	0	0	0	A	51208399	-	A	51208398	7	5	54	1	0	1	1	0	0	0	0	0	13006	595	21	0	391	0	RABL2B	22	51208398	Frame_Shift_Ins	INS	-	TCGA-OR-A5LL-01A-11D-A29I-10	21322804	51208398	96168	94	11208										
AKAP4	8852	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	49957052	49957052	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	9	0.676513436209403	1.45897631779985	2.97198879551821	1.16295213737669	0.369849964277209	1	0	ggacagcctggagctgcttcTgcaagctatttgtagagcac	12	10	1	1	rs61751432	alternate_allele	TCGA-OR-A5LL-01A-11D-A29I-10	TCGA-OR-A5LL-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9bfd4b2e-0577-4c94-8d6c-dafa9104b502	2d4f1606-9261-4ba8-96a9-ee307989af11	.	AKAP4-540	NM_003886	exon5	c.A2312G	p.Q771R	TGCTTCTGCAAGC	.	102	14	100	0	.	0	0	0	0	0	C	49957052	T	C	49957052	3	2	54	1	0	0	0	0	1	0	0	0	453	1580	55	4	260	4	AKAP4	23	49957052	Missense_Mutation	SNP	T	TCGA-OR-A5LL-01A-11D-A29I-10		49957052	105313508	95	11209										
SHROOM4	57477	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	50377344	50377344	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	9	0.676513436209403	1.45897631779985	2.97198879551821	1.16295213737669	0.369849964277209	1	0	ccgccggttttggatcgagcGgccccgggtccctccacttc	12	17	0	0	novel		TCGA-OR-A5LL-01A-11D-A29I-10	TCGA-OR-A5LL-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9bfd4b2e-0577-4c94-8d6c-dafa9104b502	2d4f1606-9261-4ba8-96a9-ee307989af11	.	SHROOM4-131	NM_020717	exon4	c.C1729T	p.R577C	TCGAGCGGCCCCG	.	46	10	43	0	.	0	0	0	0	0	A	50377344	G	A	50377344	3	1	54	1	0	0	0	0	1	0	0	0	14331	1116	39	1	2776	1	SHROOM4	23	50377344	Missense_Mutation	SNP	G	TCGA-OR-A5LL-01A-11D-A29I-10	420292	50377344	104893216	96	11210										
ITM2A	9452	ucsc.edu;bcgsc.ca	37	chrX	78616969	78616969	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0909090909090909	9	0.676513436209403	1.45897631779985	2.97198879551821	1.16295213737669	0.369849964277209	1	0	cataagtttgaggcagatatCtgccactctaaaaatcaaaa	6	8	3	2	novel		TCGA-OR-A5LL-01A-11D-A29I-10	TCGA-OR-A5LL-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9bfd4b2e-0577-4c94-8d6c-dafa9104b502	2d4f1606-9261-4ba8-96a9-ee307989af11	.	ITM2A-131	NM_004867	exon5	c.G560T	p.R187I	AGATATCTGCCAC	.	317	59	285	4	.	0	0	0	0	0	A	78616969	C	A	78616969	3	1	54	1	0	0	0	0	1	0	0	0	7933	913	32	3	239	3	ITM2A	23	78616969	Missense_Mutation	SNP	C	TCGA-OR-A5LL-01A-11D-A29I-10	28239625	78616969	76653591	97	11211										
COL4A6	1288	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	107457358	107457358	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	9	0.676513436209403	1.45897631779985	2.97198879551821	1.16295213737669	0.369849964277209	1	0	atacgggtggtccgagaagcCcaggatagccatcagggcct	14	11	1	1	novel		TCGA-OR-A5LL-01A-11D-A29I-10	TCGA-OR-A5LL-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9bfd4b2e-0577-4c94-8d6c-dafa9104b502	2d4f1606-9261-4ba8-96a9-ee307989af11	.	COL4A6-199	NM_001847	exon6	c.G428T	p.G143V	AGAAGCCCAGGAT	.	64	24	68	0	.	0	0	0	0	0	A	107457358	C	A	107457358	3	1	54	1	0	0	0	0	1	0	0	0	3701	623	22	3	4807	3	COL4A6	23	107457358	Missense_Mutation	SNP	C	TCGA-OR-A5LL-01A-11D-A29I-10	28840389	107457358	47813202	98	11212										
GPR50	9248	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	150349287	150349287	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.0909090909090909	9	0.676513436209403	1.45897631779985	2.97198879551821	1.16295213737669	0.369849964277209	1	0	caagtctgtctttagccactCcaaggctgcctctggtcacc	8	15	4	0	novel		TCGA-OR-A5LL-01A-11D-A29I-10	TCGA-OR-A5LL-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9bfd4b2e-0577-4c94-8d6c-dafa9104b502	2d4f1606-9261-4ba8-96a9-ee307989af11	.	GPR50-176	NM_004224	exon2	c.C1232G	p.S411C	GCCACTCCAAGGC	.	92	16	92	0	.	0	0	0	0	0	G	150349287	C	G	150349287	3	3	54	1	0	0	0	0	1	0	0	0	6717	855	30	3	1238	3	GPR50	23	150349287	Missense_Mutation	SNP	C	TCGA-OR-A5LL-01A-11D-A29I-10	42891929	150349287	4921273	99	11213										
SRPK3	26576	broad.mit.edu	37	chrX	153047594	153047594	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0909090909090909	9	0.676513436209403	1.45897631779985	2.97198879551821	1.16295213737669	0.369849964277209	1	0	aggtccgggacagcgaccccAgtgaccccaaaagagagacc	12	14	0	3	novel		TCGA-OR-A5LL-01A-11D-A29I-10	TCGA-OR-A5LL-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	9bfd4b2e-0577-4c94-8d6c-dafa9104b502	2d4f1606-9261-4ba8-96a9-ee307989af11	.	SRPK3-540	NM_014370	exon5	c.A406C	p.S136R	GACCCCAGTGACC	.	179	5	220	1	.	7	7	0	0	0	C	153047594	A	C	153047594	3	2	54	1	0	0	0	0	1	0	0	0	15198	188	7	5	424	5	SRPK3	23	153047594	Missense_Mutation	SNP	A	TCGA-OR-A5LL-01A-11D-A29I-10	2698307	153047594	2222966	100	11214										
AGMAT	79814	hgsc.bcm.edu	37	chr1	15911349	15911349	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.113207547169811	18	0.00131594018804135	2.75335634829306	4.90919612794613	1.28555054086969	0.0277826702146408	0.344505110661546	11	gggggctggttccggggcgcGtcggaagcctggcggctctg	21	11	1	0	rs3737705	byfrequency	TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	AGMAT-91	NM_024758	exon1	c.C114T	p.D38D	GGGCGCGTCGGAA	.	6	6	0	0	G|0.647;A|0.353	3	0	3	0	0	A	15911349	G	A	15911349	2	1	55	1	0	0	0	0	0	0	0	1	385	1136	40	1		1	AGMAT	1	15911349	Silent	SNP	G	TCGA-OR-A5LO-01A-11D-A29I-10		15911349	233339272	1	11215										
KIAA0754	643314	broad.mit.edu;mdanderson.org	37	chr1	39879083	39879083	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.113207547169811	18	0.00131594018804135	2.75335634829306	4.90919612794613	1.28555054086969	0.0277826702146408	0.344505110661546	11	agctgctgcagtgcccacccCagaggagcccacctccccag	10	19	0	1	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	.	NM_015038	exon1	c.C3146A	p.P1049Q	CCACCCCAGAGGA	.	25	11	19	0	.	0	0	0	0	0	A	39879083	C	A	39879083	3	1	55	1	0	0	0	0	1	0	0	0	8213	594	21	3	3148	3	KIAA0754	1	39879083	Missense_Mutation	SNP	C	TCGA-OR-A5LO-01A-11D-A29I-10	23967734	39879083	209371538	2	11216										
IGSF3	3321	broad.mit.edu	37	chr1	117142736	117142736	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.113207547169811	18	0.00131594018804135	2.75335634829306	4.90919612794613	1.28555054086969	0.0277826702146408	0.344505110661546	11	tgctggactcagccttctcgAtggcagttcgggttcggaag	14	10	2	0	rs75067537	byfrequency	TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	IGSF3-92	NM_001542	exon8	c.T1916C	p.I639T	TTCTCGATGGCAG	.	79	9	104	1	A|0.500;G|0.500	18	11	7	0	0	G	117142736	A	G	117142736	3	3	55	1	0	0	0	0	1	0	0	0	7622	333	12	4	1748	4	IGSF3	1	117142736	Missense_Mutation	SNP	A	TCGA-OR-A5LO-01A-11D-A29I-10	77263653	117142736	132107885	3	11217										
TTF2	8458	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	117618146	117618146	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.113207547169811	18	0.00131594018804135	2.75335634829306	4.90919612794613	1.28555054086969	0.0277826702146408	0.344505110661546	11	gcctgcctcaggggcatttcCaagagcggccggagacccac	13	15	1	2	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	TTF2-91	NM_003594	exon5	c.C940G	p.Q314E	CATTTCCAAGAGC	.	101	48	114	0	.	0	0	0	0	0	G	117618146	C	G	117618146	3	3	55	1	0	0	0	0	1	0	0	0	16757	595	21	3	958	3	TTF2	1	117618146	Missense_Mutation	SNP	C	TCGA-OR-A5LO-01A-11D-A29I-10	475410	117618146	131632475	4	11218										
NBPF7	343505	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	120378701	120378701	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.113207547169811	18	0.00131594018804135	2.75335634829306	4.90919612794613	1.28555054086969	0.0277826702146408	0.344505110661546	11	agcagagcaaactttctgttCaactagtgccaagaaagtgc	9	9	2	2	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	NBPF7-24	NM_001047980	exon7	c.G1045C	p.E349Q	TCTGTTCAACTAG	.	129	56	173	0	.	0	0	0	0	0	G	120378701	C	G	120378701	3	3	55	1	0	0	0	0	1	0	0	0	10227	835	29	3	227	3	NBPF7	1	120378701	Missense_Mutation	SNP	C	TCGA-OR-A5LO-01A-11D-A29I-10	2760555	120378701	128871920	5	11219										
TXNIP	10628	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	145441200	145441202	+	In_Frame_Del	DEL	CAA	CAA	-													0.113207547169811	18	0.00131594018804135	2.75335634829306	4.90919612794613	1.28555054086969	0.0277826702146408	0.344505110661546	11	taggtggatccctgcatcctCaacaacaatgtgcagtgagc					novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	CAA	CAA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	TXNIP-92	NM_006472	exon8	c.1158_1160del	p.386_387del	CATCCTCAACAAC	.	108	25	98	0	.	0	0	0	0	0	-	145441202	CAA	-	145441200	7	5	55	1	0	1	0	1	0	0	0	0	16841	813	29	0	1188	0	TXNIP	1	145441200	In_Frame_Del	DEL	CAA	TCGA-OR-A5LO-01A-11D-A29I-10	25062499	145441200	103809421	6	11220										
DENND4B	9909	broad.mit.edu	37	chr1	153906135	153906135	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.113207547169811	18	0.00131594018804135	2.75335634829306	4.90919612794613	1.28555054086969	0.0277826702146408	0.344505110661546	11	acccagccctcgtcggggggTgcctgcctcatcctgtcgcc	12	18	1	0	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	DENND4B-69	NM_014856	exon20	c.A3154C	p.T1052P	GGGGGGTGCCTGC	.	38	10	20	2	.	14	13	1	0	0	G	153906135	T	G	153906135	3	3	55	1	0	0	0	0	1	0	0	0	4445	1696	59	5	1372	5	DENND4B	1	153906135	Missense_Mutation	SNP	T	TCGA-OR-A5LO-01A-11D-A29I-10	8464935	153906135	95344486	7	11221										
NUP210L	91181	broad.mit.edu	37	chr1	154076608	154076608	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.113207547169811	18	0.00131594018804135	2.75335634829306	4.90919612794613	1.28555054086969	0.0277826702146408	0.344505110661546	11	tatgtgatacattgcaatggGtatttctataatctggccaa	8	6	2	1	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	NUP210L-77	NM_001159484	exon13	c.C1699A	p.P567T	CAATGGGTATTTC	.	58	4	72	0	.	0	0	0	0	0	T	154076608	G	T	154076608	3	4	55	1	0	0	0	0	1	0	0	0	10790	1261	44	3	4079	3	NUP210L	1	154076608	Missense_Mutation	SNP	G	TCGA-OR-A5LO-01A-11D-A29I-10	170473	154076608	95174013	8	11222										
SCAMP3	10067	ucsc.edu;bcgsc.ca	37	chr1	155230131	155230131	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.113207547169811	18	0.00131594018804135	2.75335634829306	4.90919612794613	1.28555054086969	0.0277826702146408	0.344505110661546	11	tattacttactagctgtgccCcccagggcagcatgctgcag	10	13	0	0	rs1142287	byfrequency	TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	SCAMP3-93	NM_005698	exon4	c.G378A	p.G126G	TGTGCCCCCCAGG	.	26	4	35	0	C|0.584;T|0.416	0	0	0	0	0	T	155230131	C	T	155230131	2	4	55	1	0	0	0	0	0	0	0	1	13907	610	22	3		3	SCAMP3	1	155230131	Silent	SNP	C	TCGA-OR-A5LO-01A-11D-A29I-10	1153523	155230131	94020490	9	11223										
ATP1B1	481	bcgsc.ca	37	chr1	169096477	169096477	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.113207547169811	18	0.00131594018804135	2.75335634829306	4.90919612794613	1.28555054086969	0.0277826702146408	0.344505110661546	11	tttagatgtgcccagtgaacCgaaagaacgaggagacttta	11	7	0	4	rs141812161	byfrequency	TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	ATP1B1-540	NM_001677	exon4	c.C398T	p.P133L	GTGAACCGAAAGA	.	56	6	69	0	C|1.000;T|0.000	60	60	0	0	0	T	169096477	C	T	169096477	3	4	55	1	0	0	0	0	1	0	0	0	1133	652	23	1	412	1	ATP1B1	1	169096477	Missense_Mutation	SNP	C	TCGA-OR-A5LO-01A-11D-A29I-10	13866346	169096477	80154144	10	11224										
NME7	29922	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	169292366	169292366	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.113207547169811	18	0.00131594018804135	2.75335634829306	4.90919612794613	1.28555054086969	0.0277826702146408	0.344505110661546	11	ttttcttacttttctttcctActgcccagctggcgagctgt	7	12	2	0	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	NME7-514	NM_013330	exon3	c.T267C	p.S89S	TTTCCTACTGCCC	.	32	13	50	0	.	1	1	0	0	0	G	169292366	A	G	169292366	2	3	55	1	0	0	0	0	0	0	0	1	10525	388	14	4		4	NME7	1	169292366	Silent	SNP	A	TCGA-OR-A5LO-01A-11D-A29I-10	195889	169292366	79958255	11	11225										
PAPPA2	60676	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	176679229	176679229	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.113207547169811	18	0.00131594018804135	2.75335634829306	4.90919612794613	1.28555054086969	0.0277826702146408	0.344505110661546	11	ctcccaaaggatacttggatCaatgggctacccgggcttac	10	12	1	0	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	PAPPA2-548	NM_020318	exon11	c.C3568G	p.Q1190E	TTGGATCAATGGG	.	128	52	193	1	.	0	0	0	0	0	G	176679229	C	G	176679229	3	3	55	1	0	0	0	0	1	0	0	0	11462	827	29	3	3659	3	PAPPA2	1	176679229	Missense_Mutation	SNP	C	TCGA-OR-A5LO-01A-11D-A29I-10	7386863	176679229	72571392	12	11226										
C1orf106	55765	hgsc.bcm.edu	37	chr1	200880978	200880978	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.113207547169811	18	0.00131594018804135	2.75335634829306	4.90919612794613	1.28555054086969	0.0277826702146408	0.344505110661546	11	cgcctggcgagtgggagctgCgccgcgcagccccgggccct	17	17	0	0	rs296520	byfrequency	TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	C1orf106-93	NM_018265	exon9	c.C1654T	p.R552C	GAGCTGCGCCGCG	.	12	11	0	0	C|0.242;T|0.758	1	0	1	0	0	T	200880978	C	T	200880978	3	4	55	1	0	0	0	0	1	0	0	0	1986	768	27	1	1646	1	C1orf106	1	200880978	Missense_Mutation	SNP	C	TCGA-OR-A5LO-01A-11D-A29I-10	24201749	200880978	48369643	13	11227										
ELK4	2005	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	205592890	205592890	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.113207547169811	18	0.00131594018804135	2.75335634829306	4.90919612794613	1.28555054086969	0.0277826702146408	0.344505110661546	11	aatcccccagagacgagccaCctcttctgcctgcaaaagct	7	16	2	1	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	ELK4-658	NM_021795	exon2	c.G121T	p.V41L	GAGCCACCTCTTC	.	114	50	179	0	.	4	1	3	0	0	A	205592890	C	A	205592890	3	1	55	1	0	0	0	0	1	0	0	0	5074	507	18	3	1328	3	ELK4	1	205592890	Missense_Mutation	SNP	C	TCGA-OR-A5LO-01A-11D-A29I-10	4711912	205592890	43657731	14	11228										
PGBD2	267002	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	249211953	249211953	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.113207547169811	18	0.00131594018804135	2.75335634829306	4.90919612794613	1.28555054086969	0.0277826702146408	0.344505110661546	11	ctaaaagaccccaaagaactGaaaaaaatgaagaggggttc	9	7	0	5	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	PGBD2-91	NM_170725	exon3	c.G1170C	p.L390L	AGAACTGAAAAAA	.	93	36	127	1	.	2	0	2	0	0	C	249211953	G	C	249211953	2	2	55	1	0	0	0	0	0	0	0	1	11810	1277	45	3		3	PGBD2	1	249211953	Silent	SNP	G	TCGA-OR-A5LO-01A-11D-A29I-10	43619063	249211953	38668	15	11229										
RETSAT	54884	broad.mit.edu	37	chr2	85577299	85577299	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.113207547169811	18	0.00131594018804135	2.75335634829306	4.90919612794613	1.28555054086969	0.0277826702146408	0.344505110661546	11	agcagcccacacctgtcgagGagctgaaccacgggcaatgg	13	13	0	1	rs138358940		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	RETSAT-70	NM_017750	exon4	c.C663T	p.L221L	GTCGAGGAGCTGA	.	123	3	211	0	G|1.000;A|0.000	51	51	0	0	0	A	85577299	G	A	85577299	2	1	55	1	0	0	0	0	0	0	0	1	13273	1161	41	3		3	RETSAT	2	85577299	Silent	SNP	G	TCGA-OR-A5LO-01A-11D-A29I-10		85577299	157622074	16	11230										
C2orf40	84417	hgsc.bcm.edu	37	chr2	106682235	106682235	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.113207547169811	18	0.00131594018804135	2.75335634829306	4.90919612794613	1.28555054086969	0.0277826702146408	0.344505110661546	11	gccgccatggctgcctccccCgcgcggcctgctgtcctggc	13	20	0	0	rs4266035		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	C2orf40-90	NM_032411	exon1	c.C15G	p.P5P	CTCCCCCGCGCGG	.	5	5	0	0	C|0.795;G|0.205	1	1	0	0	0	G	106682235	C	G	106682235	2	3	55	1	0	0	0	0	0	0	0	1	2171	639	23	2		2	C2orf40	2	106682235	Silent	SNP	C	TCGA-OR-A5LO-01A-11D-A29I-10	21104936	106682235	136517138	17	11231										
PTPN4	5775	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	120640081	120640081	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.113207547169811	18	0.00131594018804135	2.75335634829306	4.90919612794613	1.28555054086969	0.0277826702146408	0.344505110661546	11	ttttcctttcattattagctGaacttggagactacgatcag	7	8	2	2	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	PTPN4-228	NM_002830	exon8	c.G469A	p.E157K	TTAGCTGAACTTG	.	116	60	113	0	.	0	0	0	0	0	A	120640081	G	A	120640081	3	1	55	1	0	0	0	0	1	0	0	0	12825	1291	45	3	495	3	PTPN4	2	120640081	Missense_Mutation	SNP	G	TCGA-OR-A5LO-01A-11D-A29I-10	13957846	120640081	122559292	18	11232										
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	179581920	179581920	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.113207547169811	18	0.00131594018804135	2.75335634829306	4.90919612794613	1.28555054086969	0.0277826702146408	0.344505110661546	11	ctttgcctactttgagaactGtcagagtggcagtattttct	9	8	2	2	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	TTN-636	NM_001267550	exon88	c.C25541T	p.T8514I	AGAACTGTCAGAG	.	67	34	114	0	.	0	0	0	0	0	A	179581920	G	A	179581920	3	1	55	1	0	0	0	0	1	0	0	0	16773	1377	48	3	79088	3	TTN	2	179581920	Missense_Mutation	SNP	G	TCGA-OR-A5LO-01A-11D-A29I-10	58941839	179581920	63617453	19	11233										
RAPH1	65059	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	204305290	204305290	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.113207547169811	18	0.00131594018804135	2.75335634829306	4.90919612794613	1.28555054086969	0.0277826702146408	0.344505110661546	11	ctgagattccatggcaggggGagttggagggggtggaaact	19	5	0	1	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	RAPH1-1151	NM_213589	exon14	c.C2623G	p.P875A	CAGGGGGAGTTGG	.	33	22	58	1	.	2	0	2	0	0	C	204305290	G	C	204305290	3	2	55	1	0	0	0	0	1	0	0	0	13085	1174	41	3	1133	3	RAPH1	2	204305290	Missense_Mutation	SNP	G	TCGA-OR-A5LO-01A-11D-A29I-10	24723370	204305290	38894083	20	11234										
RHBDD1	84236	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	227729481	227729481	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.113207547169811	18	0.00131594018804135	2.75335634829306	4.90919612794613	1.28555054086969	0.0277826702146408	0.344505110661546	11	caaatcttccatgttgggatCaacaatattccacctgtcac	5	12	3	0	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	RHBDD1-91	NM_001167608	exon4	c.C72T	p.I24I	TGGGATCAACAAT	.	102	42	163	0	.	5	4	1	0	0	T	227729481	C	T	227729481	2	4	55	1	0	0	0	0	0	0	0	1	13351	816	29	3		3	RHBDD1	2	227729481	Silent	SNP	C	TCGA-OR-A5LO-01A-11D-A29I-10	23424191	227729481	15469892	21	11235										
ILKAP	80895	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	239079640	239079640	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.113207547169811	18	0.00131594018804135	2.75335634829306	4.90919612794613	1.28555054086969	0.0277826702146408	0.344505110661546	11	tggggtaaagaccttgaagaGcccatcacaggccaacaaaa	10	10	1	3	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	ILKAP-118	NM_030768	exon11	c.C982A	p.L328I	TGAAGAGCCCATC	.	141	67	174	0	.	50	26	23	0	1	T	239079640	G	T	239079640	3	4	55	1	0	0	0	0	1	0	0	0	7735	971	34	3	204	3	ILKAP	2	239079640	Missense_Mutation	SNP	G	TCGA-OR-A5LO-01A-11D-A29I-10	11350159	239079640	4119733	22	11236										
SI	6476	bcgsc.ca	37	chr3	164764719	164764719	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.113207547169811	18	0.00131594018804135	2.75335634829306	4.90919612794613	1.28555054086969	0.0277826702146408	0.344505110661546	11	gtattgtctcctaaccaatgCgcagcatgtcttccagatcc	7	13	2	1	rs9838509	byfrequency	TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	SI-104	NM_001041	exon16	c.G1797T	p.A599A	CCAATGCGCAGCA	.	161	5	181	0	C|0.416;A|0.584	0	0	0	0	0	A	164764719	C	A	164764719	2	1	55	1	0	0	0	0	0	0	0	1	14332	755	27	2		2	SI	3	164764719	Silent	SNP	C	TCGA-OR-A5LO-01A-11D-A29I-10		164764719	33257711	23	11237										
SPATA16	83893	bcgsc.ca	37	chr3	172766822	172766822	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.113207547169811	18	0.00131594018804135	2.75335634829306	4.90919612794613	1.28555054086969	0.0277826702146408	0.344505110661546	11	gtctcaatgaaacttgccacGcttgctatatcttcagcagg	8	11	3	1	rs508508	byfrequency	TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	SPATA16-94	NM_031955	exon3	c.C675T	p.S225S	TGCCACGCTTGCT	.	79	5	137	0	G|0.824;A|0.176	0	0	0	0	0	A	172766822	G	A	172766822	2	1	55	1	0	0	0	0	0	0	0	1	15038	1078	38	1		1	SPATA16	3	172766822	Silent	SNP	G	TCGA-OR-A5LO-01A-11D-A29I-10	8002103	172766822	25255608	24	11238										
MAP6D1	79929	hgsc.bcm.edu	37	chr3	183543009	183543009	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.113207547169811	18	0.00131594018804135	2.75335634829306	4.90919612794613	1.28555054086969	0.0277826702146408	0.344505110661546	11	tagaccccgcgggcgccgggCgcaggtggcgcggaggactg	20	13	0	1	rs114532244	byfrequency	TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	MAP6D1-90	NM_024871	exon1	c.G327T	p.A109A	GCCGGGCGCAGGT	.	35	33	0	0	C|0.982;A|0.018	0	0	0	0	0	A	183543009	C	A	183543009	2	1	55	1	0	0	0	0	0	0	0	1	9293	755	27	2		2	MAP6D1	3	183543009	Silent	SNP	C	TCGA-OR-A5LO-01A-11D-A29I-10	10776187	183543009	14479421	25	11239										
MUC4	4585	bcgsc.ca	37	chr3	195506187	195506187	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.113207547169811	18	0.00131594018804135	2.75335634829306	4.90919612794613	1.28555054086969	0.0277826702146408	0.344505110661546	11	gtggcgtgaccggtggatgcTgaggaagcatcggtgacagg	19	7	0	3	rs199574462		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	MUC4-90	NM_018406	exon2	c.A12264G	p.S4088S	GGATGCTGAGGAA	.	65	18	253	8	.	0	0	0	0	0	C	195506187	T	C	195506187	2	2	55	1	0	0	0	0	0	0	0	1	10006	1567	55	4		4	MUC4	3	195506187	Silent	SNP	T	TCGA-OR-A5LO-01A-11D-A29I-10	11963178	195506187	2516243	26	11240										
MUC4	4585	bcgsc.ca	37	chr3	195510011	195510011	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.113207547169811	18	0.00131594018804135	2.75335634829306	4.90919612794613	1.28555054086969	0.0277826702146408	0.344505110661546	11	ggtgacaggaagagaggtggCgtgacctgtggacactgacg	18	7	0	4	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	MUC4-90	NM_018406	exon2	c.G8440A	p.A2814T	AGGTGGCGTGACC	.	440	28	338	9	.	0	0	0	0	0	T	195510011	C	T	195510011	3	4	55	1	0	0	0	0	1	0	0	0	10006	768	27	1		1	MUC4	3	195510011	Missense_Mutation	SNP	C	TCGA-OR-A5LO-01A-11D-A29I-10	3824	195510011	2512419	27	11241										
IDUA	3425	broad.mit.edu	37	chr4	996204	996204	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.113207547169811	18	0.00131594018804135	2.75335634829306	4.90919612794613	1.28555054086969	0.0277826702146408	0.344505110661546	11	cgcgcttccaggtcaacaacAcccgcccgccgcacgtgcag	10	19	1	0	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	IDUA-91	NM_000203	exon8	c.A1120C	p.T374P	AACAACACCCGCC	.	131	54	71	6	.	5	4	1	0	0	C	996204	A	C	996204	3	2	55	1	0	0	0	0	1	0	0	0	7525	159	6	5	1150	5	IDUA	4	996204	Missense_Mutation	SNP	A	TCGA-OR-A5LO-01A-11D-A29I-10		996204	190158072	28	11242										
DOK7	285489	hgsc.bcm.edu	37	chr4	3495064	3495064	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.113207547169811	18	0.00131594018804135	2.75335634829306	4.90919612794613	1.28555054086969	0.0277826702146408	0.344505110661546	11	ctggctggctgggcacgagaCggcggggcctggtgatggag	21	9	0	2	rs16844470	byfrequency	TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	DOK7-91	NM_173660	exon7	c.C1351T	p.R451W	ACGAGACGGCGGG	.	16	16	0	0	C|0.990;T|0.010	0	0	0	0	0	T	3495064	C	T	3495064	3	4	55	1	0	0	0	0	1	0	0	0	4713	527	19	1	1377	1	DOK7	4	3495064	Missense_Mutation	SNP	C	TCGA-OR-A5LO-01A-11D-A29I-10	2498860	3495064	187659212	29	11243										
CRMP1	1400	hgsc.bcm.edu	37	chr4	5894586	5894586	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.113207547169811	18	0.00131594018804135	2.75335634829306	4.90919612794613	1.28555054086969	0.0277826702146408	0.344505110661546	11	tcgtaggcgccctccaccgcGgcgaacatgccgccgtactt	11	17	0	0	rs143304363		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	CRMP1-92	NM_001014809	exon1	c.C111T	p.A37A	CACCGCGGCGAAC	.	13	11	0	0	G|0.946;A|0.054	1	0	1	0	0	A	5894586	G	A	5894586	2	1	55	1	0	0	0	0	0	0	0	1	3896	1103	39	1		1	CRMP1	4	5894586	Silent	SNP	G	TCGA-OR-A5LO-01A-11D-A29I-10	2399522	5894586	185259690	30	11244										
CPZ	8532	broad.mit.edu	37	chr4	8621339	8621339	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.113207547169811	18	0.00131594018804135	2.75335634829306	4.90919612794613	1.28555054086969	0.0277826702146408	0.344505110661546	11	ggccacgctggctgctcaagTactagccccggccccagcac	11	18	1	0	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	CPZ-93	NM_001014447	exon11	c.T1954G	p.Y652D	CTCAAGTACTAGC	.	34	4	34	0	.	6	6	0	0	0	G	8621339	T	G	8621339	3	3	55	1	0	0	0	0	1	0	0	0	3845	1638	57	5	1996	5	CPZ	4	8621339	Missense_Mutation	SNP	T	TCGA-OR-A5LO-01A-11D-A29I-10	2726753	8621339	182532937	31	11245										
CSN1S1	1446	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	70802862	70802862	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.113207547169811	18	0.00131594018804135	2.75335634829306	4.90919612794613	1.28555054086969	0.0277826702146408	0.344505110661546	11	actaggaatgagtctactcaGgtgagaccctttgttttaaa	9	7	2	2	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	.	NM_001890	exon8	c.G219T	p.Q73H	TACTCAGGTGAGA	.	239	43	128	0	.	0	0	0	0	0	T	70802862	G	T	70802862	3	4	55	1	0	0	0	0	1	0	0	0	3953	1014	35	3	245	3	CSN1S1	4	70802862	Missense_Mutation	SNP	G	TCGA-OR-A5LO-01A-11D-A29I-10	62181523	70802862	120351414	32	11246										
CSN1S1	1446	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	70810573	70810573	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.113207547169811	18	0.00131594018804135	2.75335634829306	4.90919612794613	1.28555054086969	0.0277826702146408	0.344505110661546	11	tgtttttccctctagcctttCcagcagctcaaccaacttgc	5	15	2	0	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	.	NM_001890	exon15	c.C408A	p.F136L	GCCTTTCCAGCAG	.	254	70	151	1	.	0	0	0	0	0	A	70810573	C	A	70810573	3	1	55	1	0	0	0	0	1	0	0	0	3953	854	30	3	462	3	CSN1S1	4	70810573	Missense_Mutation	SNP	C	TCGA-OR-A5LO-01A-11D-A29I-10	7711	70810573	120343703	33	11247										
DSPP	1834	bcgsc.ca	37	chr4	88537051	88537051	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.113207547169811	18	0.00131594018804135	2.75335634829306	4.90919612794613	1.28555054086969	0.0277826702146408	0.344505110661546	11	agtgacagcagcgacagcagTgatagcagtgaaagcagtga	14	7	0	4	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	DSPP-90	NM_014208	exon5	c.T3237C	p.S1079S	CAGCAGTGATAGC	.	752	39	1025	16	.	0	0	0	0	0	C	88537051	T	C	88537051	2	2	55	1	0	0	0	0	0	0	0	1	4793	1693	59	4		4	DSPP	4	88537051	Silent	SNP	T	TCGA-OR-A5LO-01A-11D-A29I-10	17726478	88537051	102617225	34	11248										
DSPP	1834	bcgsc.ca	37	chr4	88537117	88537117	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.113207547169811	18	0.00131594018804135	2.75335634829306	4.90919612794613	1.28555054086969	0.0277826702146408	0.344505110661546	11	gacagcagcgatagcagcgaCagcagcgacagcagcgatag	14	11	0	0	rs199799532	alternate_allele	TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	DSPP-90	NM_014208	exon5	c.C3303T	p.D1101D	CAGCGACAGCAGC	.	329	28	643	15	.	0	0	0	0	0	T	88537117	C	T	88537117	2	4	55	1	0	0	0	0	0	0	0	1	4793	477	17	3		3	DSPP	4	88537117	Silent	SNP	C	TCGA-OR-A5LO-01A-11D-A29I-10	66	88537117	102617159	35	11249										
METTL14	57721	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	119626935	119626935	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.113207547169811	18	0.00131594018804135	2.75335634829306	4.90919612794613	1.28555054086969	0.0277826702146408	0.344505110661546	11	gcatttttgtcttggtagaaGacgccttcatctatttggaa	9	7	3	2	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	METTL14-90	NM_020961	exon10	c.G1025A	p.R342K	GTAGAAGACGCCT	.	87	21	56	0	.	10	10	0	0	0	A	119626935	G	A	119626935	3	1	55	1	0	0	0	0	1	0	0	0	9526	942	33	3	1063	3	METTL14	4	119626935	Missense_Mutation	SNP	G	TCGA-OR-A5LO-01A-11D-A29I-10	31089818	119626935	71527341	36	11250										
SMARCA5	8467	bcgsc.ca	37	chr4	144442735	144442735	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.113207547169811	18	0.00131594018804135	2.75335634829306	4.90919612794613	1.28555054086969	0.0277826702146408	0.344505110661546	11	aagatgagaagcagaacttaCtatccgttggcgagtgagta	12	6	0	4	rs11541117	byfrequency	TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	SMARCA5-227	NM_003601	exon3	c.C406T	p.L136L	AACTTACTATCCG	.	154	7	115	0	C|0.512;T|0.488	0	0	0	0	0	T	144442735	C	T	144442735	2	4	55	1	0	0	0	0	0	0	0	1	14806	564	20	3		3	SMARCA5	4	144442735	Silent	SNP	C	TCGA-OR-A5LO-01A-11D-A29I-10	24815800	144442735	46711541	37	11251										
TRIM60	166655	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	165962195	165962195	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.113207547169811	18	0.00131594018804135	2.75335634829306	4.90919612794613	1.28555054086969	0.0277826702146408	0.344505110661546	11	gcgatatgaaagaaaaaaacGaaacatttgttatgacccaa	7	6	0	3	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	TRIM60-226	NM_001258025	exon4	c.G971A	p.R324Q	AAAAACGAAACAT	.	154	33	118	0	.	0	0	0	0	0	A	165962195	G	A	165962195	3	1	55	1	0	0	0	0	1	0	0	0	16573	1058	37	1	973	1	TRIM60	4	165962195	Missense_Mutation	SNP	G	TCGA-OR-A5LO-01A-11D-A29I-10	21519460	165962195	25192081	38	11252										
ADAMTS16	170690	hgsc.bcm.edu	37	chr5	5140632	5140632	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.113207547169811	18	0.00131594018804135	2.75335634829306	4.90919612794613	1.28555054086969	0.0277826702146408	0.344505110661546	11	tggcggcgctgtggatgctgTtggcgcaggtggccgagcag	20	9	0	0	rs270208	byfrequency	TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	ADAMTS16-275	NM_139056	exon1	c.T52C	p.L18L	ATGCTGTTGGCGC	.	7	5	0	0	T|0.352;C|0.648	0	0	0	0	0	C	5140632	T	C	5140632	2	2	55	1	0	0	0	0	0	0	0	1	261	1722	60	4		4	ADAMTS16	5	5140632	Silent	SNP	T	TCGA-OR-A5LO-01A-11D-A29I-10		5140632	175774628	39	11253										
SEMA5A	9037	broad.mit.edu	37	chr5	9197318	9197318	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.113207547169811	18	0.00131594018804135	2.75335634829306	4.90919612794613	1.28555054086969	0.0277826702146408	0.344505110661546	11	gttgggatacggtagccaggCcgagcgcgagttttcttggt	16	8	1	0	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	SEMA5A-91	NM_003966	exon10	c.G1030T	p.A344S	GCCAGGCCGAGCG	.	129	9	92	1	.	0	0	0	0	0	A	9197318	C	A	9197318	3	1	55	1	0	0	0	0	1	0	0	0	14072	739	26	3	2250	3	SEMA5A	5	9197318	Missense_Mutation	SNP	C	TCGA-OR-A5LO-01A-11D-A29I-10	4056686	9197318	171717942	40	11254										
FYB	2533	broad.mit.edu	37	chr5	39135108	39135108	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.113207547169811	18	0.00131594018804135	2.75335634829306	4.90919612794613	1.28555054086969	0.0277826702146408	0.344505110661546	11	agatggatgacttgaataggGcctgttagctgcaaagagaa	13	5	0	4	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	FYB-24	NM_001243093	exon8	c.C1554A	p.G518G	AATAGGGCCTGTT	.	79	3	41	0	.	0	0	0	0	0	T	39135108	G	T	39135108	2	4	55	1	0	0	0	0	0	0	0	1	6143	1190	42	3		3	FYB	5	39135108	Silent	SNP	G	TCGA-OR-A5LO-01A-11D-A29I-10	29937790	39135108	141780152	41	11255										
MAST4	375449	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	66462103	66462103	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.113207547169811	18	0.00131594018804135	2.75335634829306	4.90919612794613	1.28555054086969	0.0277826702146408	0.344505110661546	11	gtcagccggccgccaacaccGacagaagggcggaagggaag	16	12	1	1	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	MAST4-647	NM_001164664	exon29	c.G7096A	p.D2366N	AACACCGACAGAA	.	135	33	96	0	.	21	15	6	0	0	A	66462103	G	A	66462103	3	1	55	1	0	0	0	0	1	0	0	0	9355	1058	37	1	7340	1	MAST4	5	66462103	Missense_Mutation	SNP	G	TCGA-OR-A5LO-01A-11D-A29I-10	27326995	66462103	114453157	42	11256										
CENPH	64946	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr5	68485476	68485476	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.113207547169811	18	0.00131594018804135	2.75335634829306	4.90919612794613	1.28555054086969	0.0277826702146408	0.344505110661546	11	ccagcaatggaggagcagccCcagatgcaagacgccgacga	13	13	0	2	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	CENPH-153	NM_022909	exon1	c.C15G	p.P5P	GCAGCCCCAGATG	.	51	12	32	0	.	1	0	1	0	0	G	68485476	C	G	68485476	2	3	55	1	0	0	0	0	0	0	0	1	3238	610	22	3		3	CENPH	5	68485476	Silent	SNP	C	TCGA-OR-A5LO-01A-11D-A29I-10	2023373	68485476	112429784	43	11257										
VCAN	1462	broad.mit.edu;bcgsc.ca	37	chr5	82833991	82833991	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.113207547169811	18	0.00131594018804135	2.75335634829306	4.90919612794613	1.28555054086969	0.0277826702146408	0.344505110661546	11	agtaccactgttgaggaaaaGaaaaggaaggaggaggaggg	17	3	0	2	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	VCAN-238	NM_004385	exon8	c.G5169T	p.K1723N	GGAAAAGAAAAGG	.	76	5	45	0	.	2	2	0	0	0	T	82833991	G	T	82833991	3	4	55	1	0	0	0	0	1	0	0	0	17176	933	33	3	5195	3	VCAN	5	82833991	Missense_Mutation	SNP	G	TCGA-OR-A5LO-01A-11D-A29I-10	14348515	82833991	98081269	44	11258										
CAMK4	814	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	110819981	110819981	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.113207547169811	18	0.00131594018804135	2.75335634829306	4.90919612794613	1.28555054086969	0.0277826702146408	0.344505110661546	11	gatataaatgctgaagaggcCcccaaaatggtgcccaaggc	11	10	0	2	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	CAMK4-386	NM_001744	exon11	c.C1239A	p.A413A	AGAGGCCCCCAAA	.	127	39	109	0	.	0	0	0	0	0	A	110819981	C	A	110819981	2	1	55	1	0	0	0	0	0	0	0	1	2611	610	22	3		3	CAMK4	5	110819981	Silent	SNP	C	TCGA-OR-A5LO-01A-11D-A29I-10	27985990	110819981	70095279	45	11259										
AQPEP	0	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	115336915	115336915	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.113207547169811	18	0.00131594018804135	2.75335634829306	4.90919612794613	1.28555054086969	0.0277826702146408	0.344505110661546	11	ttatcttgaaaacattaaaaAtcggactcttctaaccagca	4	9	3	1	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	.	NM_173800	exon10	c.A1799G	p.N600S	TTAAAAATCGGAC	.	376	100	220	0	.	0	0	0	0	0	G	115336915	A	G	115336915	3	3	55	1	0	0	0	0	1	0	0	0	834	101	4	4	1837	4	AQPEP	5	115336915	Missense_Mutation	SNP	A	TCGA-OR-A5LO-01A-11D-A29I-10	4516934	115336915	65578345	46	11260										
SLC26A2	1836	hgsc.bcm.edu;broad.mit.edu	37	chr5	149360347	149360348	+	Frame_Shift_Del	DEL	TG	TG	-													0.113207547169811	18	0.00131594018804135	2.75335634829306	4.90919612794613	1.28555054086969	0.0277826702146408	0.344505110661546	11	atcattggttttgctatcacTgtatcactttctgagatgtt					novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	TG	TG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	SLC26A2-90	NM_000112	exon3	c.1191_1192del	p.397_398del	TATCACTGTATCA	.	130	12	89	0	.	0	0	0	0	0	-	149360348	TG	-	149360347	7	5	55	1	0	1	0	1	0	0	0	0	14552	1567	55	0	1197	0	SLC26A2	5	149360347	Frame_Shift_Del	DEL	TG	TCGA-OR-A5LO-01A-11D-A29I-10	34023432	149360347	31554913	47	11261										
NIPAL4	348938	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	156899852	156899852	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.113207547169811	18	0.00131594018804135	2.75335634829306	4.90919612794613	1.28555054086969	0.0277826702146408	0.344505110661546	11	aaaacccacccccttctcccGccccggaacccactgttatt	4	20	1	0	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	NIPAL4-68	NM_001099287	exon6	c.G1285A	p.A429T	TCTCCCGCCCCGG	.	95	46	45	0	.	0	0	0	0	0	A	156899852	G	A	156899852	3	1	55	1	0	0	0	0	1	0	0	0	10456	1087	38	1	1307	1	NIPAL4	5	156899852	Missense_Mutation	SNP	G	TCGA-OR-A5LO-01A-11D-A29I-10	7539505	156899852	24015408	48	11262										
DBN1	1627	hgsc.bcm.edu	37	chr5	176900502	176900502	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.113207547169811	18	0.00131594018804135	2.75335634829306	4.90919612794613	1.28555054086969	0.0277826702146408	0.344505110661546	11	agcagctccaggcggtggccGctgaagctgacgccggccat	15	14	0	2	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	DBN1-587	NM_004395	exon1	c.C21T	p.S7S	GTGGCCGCTGAAG	.	32	4	0	0	.	7	7	0	0	0	A	176900502	G	A	176900502	2	1	55	1	0	0	0	0	0	0	0	1	4258	1078	38	1		1	DBN1	5	176900502	Silent	SNP	G	TCGA-OR-A5LO-01A-11D-A29I-10	20000650	176900502	4014758	49	11263										
ADAMTS2	9509	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	178608155	178608155	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.113207547169811	18	0.00131594018804135	2.75335634829306	4.90919612794613	1.28555054086969	0.0277826702146408	0.344505110661546	11	cgtcatggtagatttcattgAcctgaaagaaacagggaggc	12	7	2	4	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	ADAMTS2-228	NM_021599	exon5	c.T893C	p.V298A	TCATTGACCTGAA	.	240	69	140	0	.	0	0	0	0	0	G	178608155	A	G	178608155	3	3	55	1	0	0	0	0	1	0	0	0	265	289	10	4	2889	4	ADAMTS2	5	178608155	Missense_Mutation	SNP	A	TCGA-OR-A5LO-01A-11D-A29I-10	1707653	178608155	2307105	50	11264										
CD83	9308	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	14131769	14131769	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.113207547169811	18	0.00131594018804135	2.75335634829306	4.90919612794613	1.28555054086969	0.0277826702146408	0.344505110661546	11	agttattggagggtggtgaaGagaggatggagacaccccag	17	5	0	3	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	CD83-90	NM_004233	exon3	c.G172C	p.E58Q	GGTGAAGAGAGGA	.	127	46	132	0	.	59	34	25	0	0	C	14131769	G	C	14131769	3	2	55	1	0	0	0	0	1	0	0	0	3047	943	33	3	182	3	CD83	6	14131769	Missense_Mutation	SNP	G	TCGA-OR-A5LO-01A-11D-A29I-10		14131769	156983298	51	11265										
ATXN1	6310	broad.mit.edu	37	chr6	16327916	16327918	+	In_Frame_Del	DEL	TGC	TGC	-													0.113207547169811	18	0.00131594018804135	2.75335634829306	4.90919612794613	1.28555054086969	0.0277826702146408	0.344505110661546	11	gctgctgctgctgatgctgaTgctgctgctgctgctgctgc					rs71806515	alternate_allele	TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	ATXN1-93	NM_001128164	exon7	c.624_626del	p.208_209del	TGCTGATGCTGCT	.	30	19	11	0	.	0	0	0	0	0	-	16327918	TGC	-	16327916	7	5	55	1	0	1	0	1	0	0	0	0	1210	1464	51	0	1829	0	ATXN1	6	16327916	In_Frame_Del	DEL	TGC	TCGA-OR-A5LO-01A-11D-A29I-10	2196147	16327916	154787151	52	11266										
HIST1H1E	3008	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	26156922	26156922	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.113207547169811	18	0.00131594018804135	2.75335634829306	4.90919612794613	1.28555054086969	0.0277826702146408	0.344505110661546	11	agaccaagggcaccggcgcgTcgggttccttcaaactcaac	11	14	2	1	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	HIST1H1E-154	NM_005321	exon1	c.T304A	p.S102T	GGCGCGTCGGGTT	.	124	64	160	0	.	3	1	2	0	0	A	26156922	T	A	26156922	3	1	55	1	0	0	0	0	1	0	0	0	7147	1667	58	5	306	5	HIST1H1E	6	26156922	Missense_Mutation	SNP	T	TCGA-OR-A5LO-01A-11D-A29I-10	9829006	26156922	144958145	53	11267										
MUC21	394263	bcgsc.ca	37	chr6	30954594	30954594	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.113207547169811	18	0.00131594018804135	2.75335634829306	4.90919612794613	1.28555054086969	0.0277826702146408	0.344505110661546	11	agcacagccaccaactctgaGtccagaacgacctccaatgg	8	15	1	2	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	MUC21-92	NM_001010909	exon2	c.G642C	p.E214D	CTCTGAGTCCAGA	.	237	13	276	4	.	0	0	0	0	0	C	30954594	G	C	30954594	3	2	55	1	0	0	0	0	1	0	0	0	10005	1020	36	3	648	3	MUC21	6	30954594	Missense_Mutation	SNP	G	TCGA-OR-A5LO-01A-11D-A29I-10	4797672	30954594	140160473	54	11268										
HLA-DQA1	3117	bcgsc.ca	37	chr6	32609105	32609105	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.113207547169811	18	0.00131594018804135	2.75335634829306	4.90919612794613	1.28555054086969	0.0277826702146408	0.344505110661546	11	agctgaccacgttgcctcttGtggtgtaaacttgtaccagt	10	10	1	1	rs1129740	byfrequency	TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	HLA-DQA1-90	NM_002122	exon2	c.G101A	p.C34Y	CCTCTTGTGGTGT	.	26	16	164	0	G|0.446;A|0.554	0	0	0	0	0	A	32609105	G	A	32609105	3	1	55	1	0	0	0	0	1	0	0	0	7225	1377	48	3	107	3	HLA-DQA1	6	32609105	Missense_Mutation	SNP	G	TCGA-OR-A5LO-01A-11D-A29I-10	1654511	32609105	138505962	55	11269										
KCNK17	89822	hgsc.bcm.edu	37	chr6	39282036	39282036	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.113207547169811	18	0.00131594018804135	2.75335634829306	4.90919612794613	1.28555054086969	0.0277826702146408	0.344505110661546	11	gagcagcaggagcacggtgcTgggcaccgcgcagccccgga	17	14	0	0	rs10947804	byfrequency	TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	KCNK17-227	NM_001135111	exon1	c.A61G	p.S21G	CGGTGCTGGGCAC	.	12	12	0	0	T|0.441;C|0.559	0	0	0	0	0	C	39282036	T	C	39282036	3	2	55	1	0	0	0	0	1	0	0	0	8085	1580	55	4	1089	4	KCNK17	6	39282036	Missense_Mutation	SNP	T	TCGA-OR-A5LO-01A-11D-A29I-10	6672931	39282036	131833031	56	11270										
ENPP4	22875	broad.mit.edu	37	chr6	46107907	46107907	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.113207547169811	18	0.00131594018804135	2.75335634829306	4.90919612794613	1.28555054086969	0.0277826702146408	0.344505110661546	11	tgcaagtggccacaaatacgGacctgaagataaagaaaaca	9	8	0	3	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	ENPP4-94	NM_014936	exon2	c.G587T	p.G196V	AATACGGACCTGA	.	125	4	138	0	.	15	15	0	0	0	T	46107907	G	T	46107907	3	4	55	1	0	0	0	0	1	0	0	0	5145	1174	41	3	589	3	ENPP4	6	46107907	Missense_Mutation	SNP	G	TCGA-OR-A5LO-01A-11D-A29I-10	6825871	46107907	125007160	57	11271										
POU3F2	5454	hgsc.bcm.edu	37	chr6	99283376	99283376	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.113207547169811	18	0.00131594018804135	2.75335634829306	4.90919612794613	1.28555054086969	0.0277826702146408	0.344505110661546	11	gccggcgggcagccggccggTctgcaccaccacggcctgcg	16	18	1	0	rs195860		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	POU3F2-90	NM_005604	exon1	c.T627G	p.G209G	GGCCGGTCTGCAC	.	5	5	0	0	T|0.089;G|0.911	0	0	0	0	0	G	99283376	T	G	99283376	2	3	55	1	0	0	0	0	0	0	0	1	12304	1654	58	5		5	POU3F2	6	99283376	Silent	SNP	T	TCGA-OR-A5LO-01A-11D-A29I-10	53175469	99283376	71831691	58	11272										
ZDHHC14	79683	bcgsc.ca	37	chr6	158074629	158074629	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.113207547169811	18	0.00131594018804135	2.75335634829306	4.90919612794613	1.28555054086969	0.0277826702146408	0.344505110661546	11	ccctccaatggcatcaccatGtacggggccacgcagtcaca	9	16	2	0	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	ZDHHC14-227	NM_024630	exon8	c.G1038A	p.M346I	CACCATGTACGGG	.	51	45	84	2	.	4	2	2	0	0	A	158074629	G	A	158074629	3	1	55	1	0	0	0	0	1	0	0	0	17641	1377	48	3	1068	3	ZDHHC14	6	158074629	Missense_Mutation	SNP	G	TCGA-OR-A5LO-01A-11D-A29I-10	58791253	158074629	13040438	59	11273										
USP42	84132	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	6175530	6175530	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.113207547169811	18	0.00131594018804135	2.75335634829306	4.90919612794613	1.28555054086969	0.0277826702146408	0.344505110661546	11	gcacatattacccaggcactCagtaatcctggggacgttat	9	11	1	0	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	USP42-659	NM_032172	exon4	c.C501G	p.L167L	GGCACTCAGTAAT	.	195	34	143	0	.	2	2	0	0	0	G	6175530	C	G	6175530	2	3	55	1	0	0	0	0	0	0	0	1	17111	813	29	3		3	USP42	7	6175530	Silent	SNP	C	TCGA-OR-A5LO-01A-11D-A29I-10		6175530	152963133	60	11274										
GARS	2617	hgsc.bcm.edu	37	chr7	30634630	30634630	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.113207547169811	18	0.00131594018804135	2.75335634829306	4.90919612794613	1.28555054086969	0.0277826702146408	0.344505110661546	11	ttagcccgaccctcgctcctGctccgccggtccctcagcgc	9	21	1	0	rs2529438	byfrequency	TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	GARS-91	NM_002047	exon1	c.G93C	p.L31L	GCTCCTGCTCCGC	.	20	20	0	0	G|0.889;C|0.111	48	0	48	0	0	C	30634630	G	C	30634630	2	2	55	1	0	0	0	0	0	0	0	1	6262	1306	46	3		3	GARS	7	30634630	Silent	SNP	G	TCGA-OR-A5LO-01A-11D-A29I-10	24459100	30634630	128504033	61	11275										
GARS	2617	hgsc.bcm.edu	37	chr7	30634661	30634661	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.113207547169811	18	0.00131594018804135	2.75335634829306	4.90919612794613	1.28555054086969	0.0277826702146408	0.344505110661546	11	ccctcagcgcggcctcctgcCccccgatctccttgcccgcc	8	24	2	0	rs1049402	byfrequency	TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	GARS-91	NM_002047	exon1	c.C124G	p.P42A	TCCTGCCCCCCGA	.	15	15	0	0	C|0.329;G|0.671	36	0	36	0	0	G	30634661	C	G	30634661	3	3	55	1	0	0	0	0	1	0	0	0	6262	623	22	3	126	3	GARS	7	30634661	Missense_Mutation	SNP	C	TCGA-OR-A5LO-01A-11D-A29I-10	31	30634661	128504002	62	11276										
ZMIZ2	83637	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	44802986	44802986	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.113207547169811	18	0.00131594018804135	2.75335634829306	4.90919612794613	1.28555054086969	0.0277826702146408	0.344505110661546	11	gcaggatccagctccctgccCgaggtcatgactgtcgccac	11	16	1	1	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	ZMIZ2-137	NM_031449	exon13	c.C1834T	p.R612X	CCTGCCCGAGGTC	.	299	41	140	1	.	54	50	4	0	0	T	44802986	C	T	44802986	4	4	55	1	0	0	0	0	0	1	0	0	17734	644	23	1	1880	1	ZMIZ2	7	44802986	Nonsense_Mutation	SNP	C	TCGA-OR-A5LO-01A-11D-A29I-10	14168325	44802986	114335677	63	11277										
ELN	2006	broad.mit.edu	37	chr7	73466109	73466109	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.113207547169811	18	0.00131594018804135	2.75335634829306	4.90919612794613	1.28555054086969	0.0277826702146408	0.344505110661546	11	cagccggagtcctccctggtGttggaggggctggtgttcct	16	11	0	0	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	ELN-95	NM_001081753	exon16	c.G844T	p.V282F	CCTGGTGTTGGAG	.	129	3	121	0	.	9	9	0	0	0	T	73466109	G	T	73466109	3	4	55	1	0	0	0	0	1	0	0	0	5084	1377	48	3	906	3	ELN	7	73466109	Missense_Mutation	SNP	G	TCGA-OR-A5LO-01A-11D-A29I-10	28663123	73466109	85672554	64	11278										
FZD1	8321	hgsc.bcm.edu	37	chr7	90894459	90894460	+	In_Frame_Ins	INS	-	-	CCG													0.113207547169811	18	0.00131594018804135	2.75335634829306	4.90919612794613	1.28555054086969	0.0277826702146408	0.344505110661546	11	ggcccgggccggggcagcaaINSccgccgccgccgcctcagca					rs139480179		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	FZD1-658	NM_003505	exon1	c.264_265insCCG	p.Q88delinsQP	GCAGCAACCGCCG	.	25	24	5	5	-|0.606;CCG|0.394	0	0	0	0	0	CCG	90894460	-	CCG	90894459	7	5	55	1	0	1	1	0	0	0	0	0	6147	40	2	0	266	0	FZD1	7	90894459	In_Frame_Ins	INS	-	TCGA-OR-A5LO-01A-11D-A29I-10	17428350	90894459	68244204	65	11279										
MCM7	4176	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	99697290	99697290	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.113207547169811	18	0.00131594018804135	2.75335634829306	4.90919612794613	1.28555054086969	0.0277826702146408	0.344505110661546	11	tagcgcctggcattctcacaAattgagtccaccaactcggg	9	13	1	1	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	MCM7-651	NM_005916	exon3	c.T198A	p.I66I	CTCACAAATTGAG	.	38	6	55	0	.	23	15	8	0	0	T	99697290	A	T	99697290	2	4	55	1	0	0	0	0	0	0	0	1	9420	10	1	5		5	MCM7	7	99697290	Silent	SNP	A	TCGA-OR-A5LO-01A-11D-A29I-10	8802831	99697290	59441373	66	11280										
MUC17	140453	broad.mit.edu	37	chr7	100677627	100677627	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.113207547169811	18	0.00131594018804135	2.75335634829306	4.90919612794613	1.28555054086969	0.0277826702146408	0.344505110661546	11	taccagcataccaacctcgaCtcctagtgaaggaacgactc	7	14	0	1	rs149551296		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	MUC17-95	NM_001040105	exon3	c.C2930G	p.T977S	CCTCGACTCCTAG	.	227	4	243	0	C|1.000;G|0.000	0	0	0	0	0	G	100677627	C	G	100677627	3	3	55	1	0	0	0	0	1	0	0	0	10002	565	20	3	2940	3	MUC17	7	100677627	Missense_Mutation	SNP	C	TCGA-OR-A5LO-01A-11D-A29I-10	980337	100677627	58461036	67	11281										
TAS2R5	54429	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	141490447	141490447	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.113207547169811	18	0.00131594018804135	2.75335634829306	4.90919612794613	1.28555054086969	0.0277826702146408	0.344505110661546	11	gccaggccagcttatggtttGccaccttcctcagtgtcttc	9	14	2	0	rs142196311	alternate_allele	TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	TAS2R5-90	NM_018980	exon1	c.G286T	p.A96S	TGGTTTGCCACCT	.	118	31	138	0	G|1.000;A|0.000	0	0	0	0	0	T	141490447	G	T	141490447	3	4	55	1	0	0	0	0	1	0	0	0	15620	1319	46	3	288	3	TAS2R5	7	141490447	Missense_Mutation	SNP	G	TCGA-OR-A5LO-01A-11D-A29I-10	40812820	141490447	17648216	68	11282										
NOS3	4846	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	150696313	150696313	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.113207547169811	18	0.00131594018804135	2.75335634829306	4.90919612794613	1.28555054086969	0.0277826702146408	0.344505110661546	11	agccctgggcctgcgctggtAcgccctcccggcagtgtcca	13	17	0	0	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	NOS3-1011	NM_001160111	exon8	c.A992G	p.Y331C	GCTGGTACGCCCT	.	65	36	57	0	.	5	2	3	0	0	G	150696313	A	G	150696313	3	3	55	1	0	0	0	0	1	0	0	0	10573	391	14	4	1022	4	NOS3	7	150696313	Missense_Mutation	SNP	A	TCGA-OR-A5LO-01A-11D-A29I-10	9205866	150696313	8442350	69	11283										
NEFL	4747	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr8	24811264	24811264	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.113207547169811	18	0.00131594018804135	2.75335634829306	4.90919612794613	1.28555054086969	0.0277826702146408	0.344505110661546	11	tagccactggttatgcttccCacgctggtgaaactgagtcg	11	11	0	2	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	NEFL-24	NM_006158	exon3	c.G1215A	p.V405V	GCTTCCCACGCTG	.	65	52	86	0	.	215	0	215	0	0	T	24811264	C	T	24811264	2	4	55	1	0	0	0	0	0	0	0	1	10344	581	21	3		3	NEFL	8	24811264	Silent	SNP	C	TCGA-OR-A5LO-01A-11D-A29I-10		24811264	121552758	70	11284										
GPR124	25960	hgsc.bcm.edu	37	chr8	37699516	37699516	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.113207547169811	18	0.00131594018804135	2.75335634829306	4.90919612794613	1.28555054086969	0.0277826702146408	0.344505110661546	11	ctgctgtccagcgagagcggCagtctgcacaacagccccac	11	16	1	1	rs7010546	byfrequency	TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	GPR124-157	NM_032777	exon19	c.C3660T	p.G1220G	GAGCGGCAGTCTG	.	6	6	0	0	C|0.479;G|0.000;T|0.520	0	0	0	0	0	T	37699516	C	T	37699516	2	4	55	1	0	0	0	0	0	0	0	1	6658	697	25	3		3	GPR124	8	37699516	Silent	SNP	C	TCGA-OR-A5LO-01A-11D-A29I-10	12888252	37699516	108664506	71	11285										
OPRK1	4986	hgsc.bcm.edu	37	chr8	54163562	54163562	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.113207547169811	18	0.00131594018804135	2.75335634829306	4.90919612794613	1.28555054086969	0.0277826702146408	0.344505110661546	11	ctcggggcgcaggtagggccCggctccccgcggaagatctg	17	14	1	1	rs1051660	byfrequency	TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	OPRK1-70	NM_000912	exon2	c.G36T	p.P12P	AGGGCCCGGCTCC	.	13	10	1	0	C|0.895;A|0.105	0	0	0	0	0	A	54163562	C	A	54163562	2	1	55	1	0	0	0	0	0	0	0	1	10914	639	23	2		2	OPRK1	8	54163562	Silent	SNP	C	TCGA-OR-A5LO-01A-11D-A29I-10	16464046	54163562	92200460	72	11286										
PREX2	80243	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr8	69020559	69020559	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.113207547169811	18	0.00131594018804135	2.75335634829306	4.90919612794613	1.28555054086969	0.0277826702146408	0.344505110661546	11	gataaagaaaacaaatcttcGgagcaaggtatgctagcttt	9	6	1	1	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	PREX2-390	NM_024870	exon24	c.G2931A	p.S977S	ATCTTCGGAGCAA	.	63	22	74	0	.	0	0	0	0	0	A	69020559	G	A	69020559	2	1	55	1	0	0	0	0	0	0	0	1	12509	1103	39	1		1	PREX2	8	69020559	Silent	SNP	G	TCGA-OR-A5LO-01A-11D-A29I-10	14856997	69020559	77343463	73	11287										
JRK	8629	bcgsc.ca	37	chr8	143746416	143746416	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.113207547169811	18	0.00131594018804135	2.75335634829306	4.90919612794613	1.28555054086969	0.0277826702146408	0.344505110661546	11	tcgttcatgttgtagcgggcAtgggggccctgcagggggac	18	9	1	0	rs754957	byfrequency	TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	.	NM_003724	exon2	c.T1062C	p.H354H	GCGGGCATGGGGG	.	96	5	139	0	A|0.477;G|0.523	1	1	0	0	0	G	143746416	A	G	143746416	2	3	55	1	0	0	0	0	0	0	0	1	7985	214	8	4		4	JRK	8	143746416	Silent	SNP	A	TCGA-OR-A5LO-01A-11D-A29I-10	74725857	143746416	2617606	74	11288										
GNE	10020	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	36217454	36217454	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.113207547169811	18	0.00131594018804135	2.75335634829306	4.90919612794613	1.28555054086969	0.0277826702146408	0.344505110661546	11	cgaaaccaccacatccacgtCctgcacggaggacaaggcct	9	16	0	0	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	GNE-115	NM_001128227	exon12	c.G2170C	p.D724H	CCACGTCCTGCAC	.	140	50	169	1	.	31	20	11	0	0	G	36217454	C	G	36217454	3	3	55	1	0	0	0	0	1	0	0	0	6542	855	30	3	95	3	GNE	9	36217454	Missense_Mutation	SNP	C	TCGA-OR-A5LO-01A-11D-A29I-10		36217454	104995977	75	11289										
KIAA1958	158405	ucsc.edu;bcgsc.ca	37	chr9	115421992	115421992	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.113207547169811	18	0.00131594018804135	2.75335634829306	4.90919612794613	1.28555054086969	0.0277826702146408	0.344505110661546	11	cagccctactttgcccggacGgacagcgtcaagcgggagag	14	13	1	1	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	KIAA1958-91	NM_133465	exon4	c.G1794A	p.T598T	CCGGACGGACAGC	.	165	75	194	2	.	5	3	2	0	0	A	115421992	G	A	115421992	2	1	55	1	0	0	0	0	0	0	0	1	8285	1103	39	1		1	KIAA1958	9	115421992	Silent	SNP	G	TCGA-OR-A5LO-01A-11D-A29I-10	79204538	115421992	25791439	76	11290										
GPSM1	26086	broad.mit.edu	37	chr9	139244081	139244081	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.113207547169811	18	0.00131594018804135	2.75335634829306	4.90919612794613	1.28555054086969	0.0277826702146408	0.344505110661546	11	attcaggggactggcgggggCccagcagggactcgctaccc	16	13	1	0	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	GPSM1-90	NM_001145638	exon11	c.C1321G	p.P441A	CGGGGGCCCAGCA	.	116	16	149	10	.	1	1	0	0	0	G	139244081	C	G	139244081	3	3	55	1	0	0	0	0	1	0	0	0	6755	739	26	3	1530	3	GPSM1	9	139244081	Missense_Mutation	SNP	C	TCGA-OR-A5LO-01A-11D-A29I-10	23822089	139244081	1969350	77	11291										
NOXA1	10811	hgsc.bcm.edu	37	chr9	140317999	140317999	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.113207547169811	18	0.00131594018804135	2.75335634829306	4.90919612794613	1.28555054086969	0.0277826702146408	0.344505110661546	11	gccatggcctctctgggggaCctggtgcgcgcctggcacct	15	15	1	0	rs112864733		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	NOXA1-90	NM_006647	exon1	c.C18G	p.D6E	GGGGGACCTGGTG	.	6	6	0	0	C|0.934;G|0.066	0	0	0	0	0	G	140317999	C	G	140317999	3	3	55	1	0	0	0	0	1	0	0	0	10589	506	18	3	20	3	NOXA1	9	140317999	Missense_Mutation	SNP	C	TCGA-OR-A5LO-01A-11D-A29I-10	1073918	140317999	895432	78	11292										
TAF3	83860	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr10	8006163	8006163	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.113207547169811	18	0.00131594018804135	2.75335634829306	4.90919612794613	1.28555054086969	0.0277826702146408	0.344505110661546	11	atcccaccaatgctttctccAgtccatgtacaggacagtac	6	14	1	0	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	TAF3-69	NM_031923	exon3	c.A690G	p.P230P	TTCTCCAGTCCAT	.	222	44	183	0	.	11	10	1	0	0	G	8006163	A	G	8006163	2	3	55	1	0	0	0	0	0	0	0	1	15562	175	7	4		4	TAF3	10	8006163	Silent	SNP	A	TCGA-OR-A5LO-01A-11D-A29I-10		8006163	127528584	79	11293										
ARHGAP21	57584	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr10	24909959	24909959	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.113207547169811	18	0.00131594018804135	2.75335634829306	4.90919612794613	1.28555054086969	0.0277826702146408	0.344505110661546	11	tgaaggacctgtatggttgtTtctattggataacaaatcta	9	5	2	1	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	ARHGAP21-235	NM_020824	exon9	c.A865G	p.N289D	GGTTGTTTCTATT	.	429	93	285	0	.	3	2	1	0	0	C	24909959	T	C	24909959	3	2	55	1	0	0	0	0	1	0	0	0	871	1841	64	4	5083	4	ARHGAP21	10	24909959	Missense_Mutation	SNP	T	TCGA-OR-A5LO-01A-11D-A29I-10	16903796	24909959	110624788	80	11294										
ZEB1	6935	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr10	31810238	31810238	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.113207547169811	18	0.00131594018804135	2.75335634829306	4.90919612794613	1.28555054086969	0.0277826702146408	0.344505110661546	11	taaatatccctgccaagaacAatgatcagcctcaatctgca	5	12	3	2	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	ZEB1-518	NM_001174096	exon7	c.A1978C	p.N660H	AAGAACAATGATC	.	145	45	87	0	.	6	5	1	0	0	C	31810238	A	C	31810238	3	2	55	1	0	0	0	0	1	0	0	0	17660	130	5	5	2015	5	ZEB1	10	31810238	Missense_Mutation	SNP	A	TCGA-OR-A5LO-01A-11D-A29I-10	6900279	31810238	103724509	81	11295										
C10orf95	79946	hgsc.bcm.edu	37	chr10	104210735	104210735	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.113207547169811	18	0.00131594018804135	2.75335634829306	4.90919612794613	1.28555054086969	0.0277826702146408	0.344505110661546	11	tcccgggccggctgcggaagCtgtgggcctggactgggggt	20	11	0	0	rs2281878	byfrequency	TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	C10orf95-91	NM_024886	exon2	c.G253T	p.A85S	CGGAAGCTGTGGG	.	19	11	1	0	C|0.759;A|0.241	2	1	1	0	0	A	104210735	C	A	104210735	3	1	55	1	0	0	0	0	1	0	0	0	1630	797	28	3	524	3	C10orf95	10	104210735	Missense_Mutation	SNP	C	TCGA-OR-A5LO-01A-11D-A29I-10	72400497	104210735	31324012	82	11296										
NEURL	9148	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	105330702	105330702	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.113207547169811	18	0.00131594018804135	2.75335634829306	4.90919612794613	1.28555054086969	0.0277826702146408	0.344505110661546	11	aagcactgtccggcagtgctGcccagcggggggctcccagc	15	15	0	0	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	NEURL-226	NM_004210	exon2	c.G159T	p.L53L	AGTGCTGCCCAGC	.	210	55	221	1	.	2	2	0	0	0	T	105330702	G	T	105330702	2	4	55	1	0	0	0	0	0	0	0	1	10374	1306	46	3		3	NEURL	10	105330702	Silent	SNP	G	TCGA-OR-A5LO-01A-11D-A29I-10	1119967	105330702	30204045	83	11297										
ADRB1	153	hgsc.bcm.edu	37	chr10	115804008	115804008	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.113207547169811	18	0.00131594018804135	2.75335634829306	4.90919612794613	1.28555054086969	0.0277826702146408	0.344505110661546	11	ctggtgcccgcgtcgccgccCgcctcgttgctgcctcccgc	12	21	0	0	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	ADRB1-658	NM_000684	exon1	c.C117T	p.P39P	GCCGCCCGCCTCG	.	10	8	0	0	.	0	0	0	0	0	T	115804008	C	T	115804008	2	4	55	1	0	0	0	0	0	0	0	1	340	639	23	1		1	ADRB1	10	115804008	Silent	SNP	C	TCGA-OR-A5LO-01A-11D-A29I-10	10473306	115804008	19730739	84	11298										
PNLIP	5406	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr10	118307963	118307963	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.113207547169811	18	0.00131594018804135	2.75335634829306	4.90919612794613	1.28555054086969	0.0277826702146408	0.344505110661546	11	tcatggattcatagacaaggGagaagaaaactggctggcca	12	7	2	3	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	PNLIP-92	NM_000936	exon4	c.G293A	p.G98E	ACAAGGGAGAAGA	.	131	31	117	0	.	0	0	0	0	0	A	118307963	G	A	118307963	3	1	55	1	0	0	0	0	1	0	0	0	12178	1174	41	3	303	3	PNLIP	10	118307963	Missense_Mutation	SNP	G	TCGA-OR-A5LO-01A-11D-A29I-10	2503955	118307963	17226784	85	11299										
BTBD16	118663	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr10	124089066	124089066	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.113207547169811	18	0.00131594018804135	2.75335634829306	4.90919612794613	1.28555054086969	0.0277826702146408	0.344505110661546	11	gccgctcttcctctgcttgcGtctgcacggcatcaccaaag	9	16	4	0	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	BTBD16-91	NM_144587	exon11	c.G983A	p.R328H	GCTTGCGTCTGCA	.	71	28	58	0	.	1	1	0	0	0	A	124089066	G	A	124089066	3	1	55	1	0	0	0	0	1	0	0	0	1544	1145	40	1	1021	1	BTBD16	10	124089066	Missense_Mutation	SNP	G	TCGA-OR-A5LO-01A-11D-A29I-10	5781103	124089066	11445681	86	11300										
EBF3	253738	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr10	131639127	131639127	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.113207547169811	18	0.00131594018804135	2.75335634829306	4.90919612794613	1.28555054086969	0.0277826702146408	0.344505110661546	11	ctgccgtagggagagttagcGgaggagccattaagaaatcc	14	8	0	2	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	EBF3-91	NM_001005463	exon14	c.C1515T	p.S505S	GTTAGCGGAGGAG	.	64	15	89	0	.	0	0	0	0	0	A	131639127	G	A	131639127	2	1	55	1	0	0	0	0	0	0	0	1	4893	1103	39	1		1	EBF3	10	131639127	Silent	SNP	G	TCGA-OR-A5LO-01A-11D-A29I-10	7550061	131639127	3895620	87	11301										
KNDC1	85442	hgsc.bcm.edu	37	chr10	135012429	135012430	+	Missense_Mutation	DNP	TT	TT	AC													0.113207547169811	18	0.00131594018804135	2.75335634829306	4.90919612794613	1.28555054086969	0.0277826702146408	0.344505110661546	11	tgagccgatcccacctggagTtgcttccgggggcctcaggc					novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	TT	TT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	KNDC1-229	NM_152643	exon14	c.T2418C	p.V806D	TGGAGTTGCTTCC	.	9	0	2	0	T|0.470;C|0.530	0	0	0	0	0	AC	135012430	TT	AC	135012429	3	1	55	1	0	0	0	0	1	0	0	0	8447	1725	60	5	2471	5	KNDC1	10	135012429	Missense_Mutation	DNP	TT	TCGA-OR-A5LO-01A-11D-A29I-10	3373302	135012429	522318	88	11302										
MUC2	4583	bcgsc.ca	37	chr11	1092973	1092973	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.113207547169811	18	0.00131594018804135	2.75335634829306	4.90919612794613	1.28555054086969	0.0277826702146408	0.344505110661546	11	cggtgaccccaaccccaacaCccaccggcacacagacccca	6	22	0	2	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	MUC2-90	NM_002457	exon30	c.C4792T	p.P1598S	CCAACACCCACCG	.	77	6	143	0	.	0	0	0	0	0	T	1092973	C	T	1092973	3	4	55	1	0	0	0	0	1	0	0	0	10003	507	18	3	4910	3	MUC2	11	1092973	Missense_Mutation	SNP	C	TCGA-OR-A5LO-01A-11D-A29I-10		1092973	133913543	89	11303										
MUC5B	727897	bcgsc.ca	37	chr11	1253980	1253980	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.113207547169811	18	0.00131594018804135	2.75335634829306	4.90919612794613	1.28555054086969	0.0277826702146408	0.344505110661546	11	caagggcgtacagctcagcgActggagggacggcgtctgca	16	11	2	0	rs202127660		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	.	NM_002458	exon17	c.A2045G	p.D682G	TCAGCGACTGGAG	.	80	11	30	1	.	0	0	0	0	0	G	1253980	A	G	1253980	3	3	55	1	0	0	0	0	1	0	0	0	10007	275	10	4	2120	4	MUC5B	11	1253980	Missense_Mutation	SNP	A	TCGA-OR-A5LO-01A-11D-A29I-10	161007	1253980	133752536	90	11304										
SYT8	90019	hgsc.bcm.edu	37	chr11	1858572	1858572	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.113207547169811	18	0.00131594018804135	2.75335634829306	4.90919612794613	1.28555054086969	0.0277826702146408	0.344505110661546	11	cccggcggcccattgcccagCggcaccccctgcggccagcc	12	22	0	0	rs2292474	byfrequency	TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	SYT8-91	NM_138567	exon9	c.C1117T	p.R373W	GCCCAGCGGCACC	.	15	15	0	0	C|0.602;T|0.398	1	0	1	0	0	T	1858572	C	T	1858572	3	4	55	1	0	0	0	0	1	0	0	0	15517	759	27	1	1151	1	SYT8	11	1858572	Missense_Mutation	SNP	C	TCGA-OR-A5LO-01A-11D-A29I-10	604592	1858572	133147944	91	11305										
WT1	7490	hgsc.bcm.edu	37	chr11	32456694	32456694	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.113207547169811	18	0.00131594018804135	2.75335634829306	4.90919612794613	1.28555054086969	0.0277826702146408	0.344505110661546	11	acgtcggagcccatttgctgCggctcagacccggacgcccc	12	17	1	1	rs2234582	byfrequency	TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	WT1-6891	NM_024424	exon1	c.G198T	p.P66P	TTGCTGCGGCTCA	.	6	5	0	0	C|0.748;A|0.252	0	0	0	0	0	A	32456694	C	A	32456694	2	1	55	1	0	0	0	0	0	0	0	1	17446	755	27	2		2	WT1	11	32456694	Silent	SNP	C	TCGA-OR-A5LO-01A-11D-A29I-10	30598122	32456694	102549822	92	11306										
LRRC4C	57689	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr11	40136210	40136210	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.113207547169811	18	0.00131594018804135	2.75335634829306	4.90919612794613	1.28555054086969	0.0277826702146408	0.344505110661546	11	cctcatcttgtagaaaatgaCcagcatcactgcagccatga	7	12	3	3	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	LRRC4C-521	NM_001258419	exon7	c.G1633C	p.V545L	AAATGACCAGCAT	.	143	11	169	0	.	6	6	0	0	0	G	40136210	C	G	40136210	3	3	55	1	0	0	0	0	1	0	0	0	9035	507	18	3	293	3	LRRC4C	11	40136210	Missense_Mutation	SNP	C	TCGA-OR-A5LO-01A-11D-A29I-10	7679516	40136210	94870306	93	11307										
FOLH1	2346	bcgsc.ca	37	chr11	49204732	49204732	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.113207547169811	18	0.00131594018804135	2.75335634829306	4.90919612794613	1.28555054086969	0.0277826702146408	0.344505110661546	11	ctgtgcatcatagtatccaaTtggatgaacaggaatacttg	9	7	1	1	rs199782232		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	FOLH1-579	NM_004476	exon7	c.A889G	p.I297V	ATCCAATTGGATG	.	114	6	145	1	.	5	5	0	0	0	C	49204732	T	C	49204732	3	2	55	1	0	0	0	0	1	0	0	0	5998	1493	52	4	1415	4	FOLH1	11	49204732	Missense_Mutation	SNP	T	TCGA-OR-A5LO-01A-11D-A29I-10	9068522	49204732	85801784	94	11308										
FOLH1	2346	ucsc.edu	37	chr11	49204779	49204779	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.113207547169811	18	0.00131594018804135	2.75335634829306	4.90919612794613	1.28555054086969	0.0277826702146408	0.344505110661546	11	caacagcctctgcaattccaCgcctataagcatattctgaa	5	13	2	1	rs116795343	byfrequency	TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	FOLH1-579	NM_004476	exon7	c.G842A	p.R281H	ATTCCACGCCTAT	.	93	14	120	4	C|0.974;T|0.026	5	5	0	0	0	T	49204779	C	T	49204779	3	4	55	1	0	0	0	0	1	0	0	0	5998	536	19	1	1462	1	FOLH1	11	49204779	Missense_Mutation	SNP	C	TCGA-OR-A5LO-01A-11D-A29I-10	47	49204779	85801737	95	11309										
TM7SF2	7108	hgsc.bcm.edu	37	chr11	64880090	64880090	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.113207547169811	18	0.00131594018804135	2.75335634829306	4.90919612794613	1.28555054086969	0.0277826702146408	0.344505110661546	11	ggtccacccgcgtccctgccGgggctggaggtgctgtggag	18	13	0	0	rs4930284		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	TM7SF2-91	NM_003273	exon2	c.G156C	p.P52P	CCTGCCGGGGCTG	.	7	7	0	0	G|0.005;C|0.995	252	1	250	1	0	C	64880090	G	C	64880090	2	2	55	1	0	0	0	0	0	0	0	1	16011	1103	39	2		2	TM7SF2	11	64880090	Silent	SNP	G	TCGA-OR-A5LO-01A-11D-A29I-10	15675311	64880090	70126426	96	11310										
PPME1	51400	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	73957234	73957234	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.113207547169811	18	0.00131594018804135	2.75335634829306	4.90919612794613	1.28555054086969	0.0277826702146408	0.344505110661546	11	cttagttgtcccattcctaaAttgctgctcttggctggtaa	8	10	1	0	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	.	NM_001271593	exon10	c.A990G	p.K330K	TCCTAAATTGCTG	.	66	63	70	0	.	22	0	22	0	0	G	73957234	A	G	73957234	2	3	55	1	0	0	0	0	0	0	0	1	12379	98	4	4		4	PPME1	11	73957234	Silent	SNP	A	TCGA-OR-A5LO-01A-11D-A29I-10	9077144	73957234	61049282	97	11311										
CD163L1	283316	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	7531782	7531782	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.113207547169811	18	0.00131594018804135	2.75335634829306	4.90919612794613	1.28555054086969	0.0277826702146408	0.344505110661546	11	caaacaacttcagcaatgttCattccccagccattagcaca	4	14	2	0	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	CD163L1-100	NM_174941	exon9	c.G2163T	p.M721I	AATGTTCATTCCC	.	141	28	110	0	.	1	1	0	0	0	A	7531782	C	A	7531782	3	1	55	1	0	0	0	0	1	0	0	0	2974	826	29	3	2242	3	CD163L1	12	7531782	Missense_Mutation	SNP	C	TCGA-OR-A5LO-01A-11D-A29I-10		7531782	126320113	98	11312										
WBP11	51729	broad.mit.edu	37	chr12	14941906	14941906	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.113207547169811	18	0.00131594018804135	2.75335634829306	4.90919612794613	1.28555054086969	0.0277826702146408	0.344505110661546	11	tggaggtgcagggggaggtaGccttggtgggggtccacgag	22	6	0	0	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	WBP11-92	NM_016312	exon11	c.C1471A	p.L491I	GAGGTAGCCTTGG	.	117	4	79	0	.	90	90	0	0	0	T	14941906	G	T	14941906	3	4	55	1	0	0	0	0	1	0	0	0	17296	962	34	3	462	3	WBP11	12	14941906	Missense_Mutation	SNP	G	TCGA-OR-A5LO-01A-11D-A29I-10	7410124	14941906	118909989	99	11313										
EPS8	2059	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	15823815	15823815	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.113207547169811	18	0.00131594018804135	2.75335634829306	4.90919612794613	1.28555054086969	0.0277826702146408	0.344505110661546	11	cacggtattgagatatatctGacacactgctgacactgtcc	8	11	1	3	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	EPS8-94	NM_004447	exon4	c.C179T	p.S60L	ATATCTGACACAC	.	120	32	112	0	.	3	3	0	0	0	A	15823815	G	A	15823815	3	1	55	1	0	0	0	0	1	0	0	0	5207	1294	45	3	2361	3	EPS8	12	15823815	Missense_Mutation	SNP	G	TCGA-OR-A5LO-01A-11D-A29I-10	881909	15823815	118028080	100	11314										
KRT72	140807	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	52980754	52980754	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.113207547169811	18	0.00131594018804135	2.75335634829306	4.90919612794613	1.28555054086969	0.0277826702146408	0.344505110661546	11	gctcacagaatttggatattCgccagacatcctgaagaagg	10	9	1	4	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	KRT72-96	NM_001146225	exon8	c.G1321A	p.E441K	GATATTCGCCAGA	.	242	50	185	0	.	0	0	0	0	0	T	52980754	C	T	52980754	3	4	55	1	0	0	0	0	1	0	0	0	8506	893	31	1	222	1	KRT72	12	52980754	Missense_Mutation	SNP	C	TCGA-OR-A5LO-01A-11D-A29I-10	37156939	52980754	80871141	101	11315										
HNRNPA1	3178	broad.mit.edu;ucsc.edu	37	chr12	54677695	54677695	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.113207547169811	18	0.00131594018804135	2.75335634829306	4.90919612794613	1.28555054086969	0.0277826702146408	0.344505110661546	11	gggaggaaattttggaggcaGaagctctggcccctatggcg	16	8	1	1	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	HNRNPA1-93	NM_031157	exon9	c.G1007C	p.R336T	GAGGCAGAAGCTC	.	23	5	15	0	.	2572	1960	610	1	1	C	54677695	G	C	54677695	3	2	55	1	0	0	0	0	1	0	0	0	7278	942	33	3	1041	3	HNRNPA1	12	54677695	Missense_Mutation	SNP	G	TCGA-OR-A5LO-01A-11D-A29I-10	1696941	54677695	79174200	102	11316										
AMDHD1	144193	hgsc.bcm.edu	37	chr12	96337183	96337183	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.113207547169811	18	0.00131594018804135	2.75335634829306	4.90919612794613	1.28555054086969	0.0277826702146408	0.344505110661546	11	cggcgcgaggcgacatggcaAgcggccacagcctcctgctg	15	15	0	0	rs7955450	byfrequency	TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	AMDHD1-90	NM_152435	exon1	c.A7G	p.S3G	ATGGCAAGCGGCC	.	8	8	0	0	A|0.273;G|0.727	1	0	1	0	0	G	96337183	A	G	96337183	3	3	55	1	0	0	0	0	1	0	0	0	567	72	3	4	9	4	AMDHD1	12	96337183	Missense_Mutation	SNP	A	TCGA-OR-A5LO-01A-11D-A29I-10	41659488	96337183	37514712	103	11317										
UNG	7374	hgsc.bcm.edu	37	chr12	109536257	109536257	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.113207547169811	18	0.00131594018804135	2.75335634829306	4.90919612794613	1.28555054086969	0.0277826702146408	0.344505110661546	11	gccatcccagccaagaaggcCccggctgggcaggaggagcc	15	15	0	1	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	UNG-1083	NM_080911	exon2	c.C153G	p.A51A	GAAGGCCCCGGCT	.	94	30	3	0	.	106	71	35	0	0	G	109536257	C	G	109536257	2	3	55	1	0	0	0	0	0	0	0	1	17037	610	22	3		3	UNG	12	109536257	Silent	SNP	C	TCGA-OR-A5LO-01A-11D-A29I-10	13199074	109536257	24315638	104	11318										
RNFT2	84900	hgsc.bcm.edu	37	chr12	117187907	117187907	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.113207547169811	18	0.00131594018804135	2.75335634829306	4.90919612794613	1.28555054086969	0.0277826702146408	0.344505110661546	11	caccgccagccccaccaccaTttccaccatggcggccaccg	7	22	0	0	rs111256849	byfrequency	TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	.	NM_001109903	exon4	c.T345C	p.H115H	CCACCATTTCCAC	.	14	11	0	0	T|0.767;C|0.233	0	0	0	0	0	C	117187907	T	C	117187907	2	2	55	1	0	0	0	0	0	0	0	1	13537	1490	52	4		4	RNFT2	12	117187907	Silent	SNP	T	TCGA-OR-A5LO-01A-11D-A29I-10	7651650	117187907	16663988	105	11319			1	54		2	2	13	N	T_C	6.163259e-05
RNFT2	84900	hgsc.bcm.edu	37	chr12	117187919	117187919	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.113207547169811	18	0.00131594018804135	2.75335634829306	4.90919612794613	1.28555054086969	0.0277826702146408	0.344505110661546	11	caccaccatttccaccatggCggccaccgcgggggctccct	10	19	0	0	rs116754010	byfrequency	TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	.	NM_001109903	exon4	c.C357T	p.G119G	CCATGGCGGCCAC	.	12	11	0	0	C|0.954;T|0.046	0	0	0	0	0	T	117187919	C	T	117187919	2	4	55	1	0	0	0	0	0	0	0	1	13537	755	27	1		1	RNFT2	12	117187919	Silent	SNP	C	TCGA-OR-A5LO-01A-11D-A29I-10	12	117187919	16663976	106	11320			1	54		2	2	13	N	T_C	6.163259e-05
PGAM5	192111	hgsc.bcm.edu	37	chr12	133294107	133294107	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.113207547169811	18	0.00131594018804135	2.75335634829306	4.90919612794613	1.28555054086969	0.0277826702146408	0.344505110661546	11	atcgtccattcgtctatgacGcgcgccatagagaccaccga	9	14	1	2	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	PGAM5-90	NM_138575	exon3	c.G453T	p.T151T	TATGACGCGCGCC	.	77	4	107	0	.	24	24	0	0	0	T	133294107	G	T	133294107	2	4	55	1	0	0	0	0	0	0	0	1	11805	1074	38	2		2	PGAM5	12	133294107	Silent	SNP	G	TCGA-OR-A5LO-01A-11D-A29I-10	16106188	133294107	557788	107	11321										
SIX6	4990	broad.mit.edu	37	chr14	60977896	60977897	+	Frame_Shift_Ins	INS	-	-	C													0.113207547169811	18	0.00131594018804135	2.75335634829306	4.90919612794613	1.28555054086969	0.0277826702146408	0.344505110661546	11	gggcgtcgccaccagcccggINSccgccagtctatccagcaag					novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	SIX6-90	NM_007374	exon2	c.667_668insC	p.A223fs	AGCCCGGCCGCCA	.	124	6	28	0	.	0	0	0	0	0	C	60977897	-	C	60977896	7	5	55	1	0	1	1	0	0	0	0	0	14386	1203	42	0	673	0	SIX6	14	60977896	Frame_Shift_Ins	INS	-	TCGA-OR-A5LO-01A-11D-A29I-10		60977896	46371644	108	11322										
DIO3	1735	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr14	102028383	102028383	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.113207547169811	18	0.00131594018804135	2.75335634829306	4.90919612794613	1.28555054086969	0.0277826702146408	0.344505110661546	11	tgagcgccttccagcgcctgGtcactaagtaccagcgcgac	11	15	1	1	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	DIO3-494	.	.	.	.	CGCCTGGTCACTA	.	100	22	57	0	.	0	0	0	0	0	T	102028383	G	T	102028383	3	4	55	1	0	0	0	0	1	0	0	0	4537	1261	44	3	552	3	DIO3	14	102028383	Missense_Mutation	SNP	G	TCGA-OR-A5LO-01A-11D-A29I-10	41050487	102028383	5321157	109	11323										
SMAD6	4091	hgsc.bcm.edu	37	chr15	66995716	66995716	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.113207547169811	18	0.00131594018804135	2.75335634829306	4.90919612794613	1.28555054086969	0.0277826702146408	0.344505110661546	11	gacgaggatgggagcttgggCagccgagctgagccggcccc	18	12	0	1	rs149612008		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	SMAD6-415	NM_005585	exon1	c.C120T	p.G40G	CTTGGGCAGCCGA	.	57	23	0	0	A|0.008;C|0.992	0	0	0	0	0	T	66995716	C	T	66995716	2	4	55	1	0	0	0	0	0	0	0	1	14797	697	25	3		3	SMAD6	15	66995716	Silent	SNP	C	TCGA-OR-A5LO-01A-11D-A29I-10		66995716	35535676	110	11324										
PTPN9	5780	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr15	75782617	75782617	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.113207547169811	18	0.00131594018804135	2.75335634829306	4.90919612794613	1.28555054086969	0.0277826702146408	0.344505110661546	11	gcagggtacatccccataacGgtttttctctaggtttcctg	9	11	1	0	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	PTPN9-226	NM_002833	exon8	c.C994G	p.R332G	CATAACGGTTTTT	.	110	54	121	0	.	14	7	7	0	0	C	75782617	G	C	75782617	3	2	55	1	0	0	0	0	1	0	0	0	12829	1116	39	2	811	2	PTPN9	15	75782617	Missense_Mutation	SNP	G	TCGA-OR-A5LO-01A-11D-A29I-10	8786901	75782617	26748775	111	11325										
C16orf11	146325	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr16	615240	615241	+	In_Frame_Ins	INS	-	-	GACGAGGAGTTCCCA													0.113207547169811	18	0.00131594018804135	2.75335634829306	4.90919612794613	1.28555054086969	0.0277826702146408	0.344505110661546	11	ggctggggcacctgtgttgcINSgacgaggagttcccagaccc					novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	C16orf11-23	NM_145270	exon3	c.1649_1650insGACGAGGAGTTCCCA	p.A550delinsATRSSQ	GTGTTGCGACGAG	.	265	13	151	0	.	0	0	0	0	0	GACGAGGAGTTCCCA	615241	-	GACGAGGAGTTCCCA	615240	7	5	55	1	0	1	1	0	0	0	0	0	1814	768	27	0	1655	0	C16orf11	16	615240	In_Frame_Ins	INS	-	TCGA-OR-A5LO-01A-11D-A29I-10		615240	89739513	112	11326										
PKD1	5310	hgsc.bcm.edu	37	chr16	2140912	2140912	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.113207547169811	18	0.00131594018804135	2.75335634829306	4.90919612794613	1.28555054086969	0.0277826702146408	0.344505110661546	11	aaaagcaggaagagcagcgaGgccgccaggccacgggctgc	16	12	0	1	rs112387277		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	PKD1-91	NM_001009944	exon43	c.C11976G	p.A3992A	CAGCGAGGCCGCC	.	23	22	2	0	G|0.999;C|0.001	10	0	10	0	0	C	2140912	G	C	2140912	2	2	55	1	0	0	0	0	0	0	0	1	11992	987	35	3		3	PKD1	16	2140912	Silent	SNP	G	TCGA-OR-A5LO-01A-11D-A29I-10	1525672	2140912	88213841	113	11327										
FLYWCH2	114984	ucsc.edu;bcgsc.ca	37	chr16	2946453	2946453	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.113207547169811	18	0.00131594018804135	2.75335634829306	4.90919612794613	1.28555054086969	0.0277826702146408	0.344505110661546	11	caggccctgggtcccgggatGcccctgcccgagcccagcga	14	18	0	0	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	FLYWCH2-22	NM_001142499	exon3	c.G3T	p.M1I	CGGGATGCCCCTG	.	38	4	45	0	.	300	300	0	0	0	T	2946453	G	T	2946453	3	4	55	1	0	0	0	0	1	0	0	0	5967	1319	46	3	5	3	FLYWCH2	16	2946453	Missense_Mutation	SNP	G	TCGA-OR-A5LO-01A-11D-A29I-10	805541	2946453	87408300	114	11328										
BFAR	51283	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr16	14761544	14761544	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.113207547169811	18	0.00131594018804135	2.75335634829306	4.90919612794613	1.28555054086969	0.0277826702146408	0.344505110661546	11	ggaaagtatcaacgcaggggCtttttgtggccatgttctgg	14	7	2	0	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	BFAR-92	NM_016561	exon8	c.C1213A	p.L405I	CAGGGGCTTTTTG	.	92	41	85	0	.	37	24	13	0	0	A	14761544	C	A	14761544	3	1	55	1	0	0	0	0	1	0	0	0	1415	797	28	3	1239	3	BFAR	16	14761544	Missense_Mutation	SNP	C	TCGA-OR-A5LO-01A-11D-A29I-10	11815091	14761544	75593209	115	11329										
TOX3	27324	broad.mit.edu	37	chr16	52473370	52473370	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.113207547169811	18	0.00131594018804135	2.75335634829306	4.90919612794613	1.28555054086969	0.0277826702146408	0.344505110661546	11	cagctgctgttgattaatttGctgctggagatgctgctgct	12	8	0	2	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	TOX3-68	NM_001080430	exon7	c.C1498G	p.Q500E	TAATTTGCTGCTG	.	17	3	23	0	.	0	0	0	0	0	C	52473370	G	C	52473370	3	2	55	1	0	0	0	0	1	0	0	0	16417	1328	46	3	236	3	TOX3	16	52473370	Missense_Mutation	SNP	G	TCGA-OR-A5LO-01A-11D-A29I-10	37711826	52473370	37881383	116	11330										
IRX3	79191	hgsc.bcm.edu	37	chr16	54318528	54318528	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.113207547169811	18	0.00131594018804135	2.75335634829306	4.90919612794613	1.28555054086969	0.0277826702146408	0.344505110661546	11	ccagcagggagagcgggtgcAggcgggggccgggcggtggg	25	9	0	1	rs1450355		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	IRX3-90	NM_024336	exon2	c.T1265C	p.L422P	GGGTGCAGGCGGG	.	6	6	0	0	T|0.035;G|0.004	0	0	0	0	0	G	54318528	A	G	54318528	3	3	55	1	0	0	0	0	1	0	0	0	7866	188	7	4	252	4	IRX3	16	54318528	Missense_Mutation	SNP	A	TCGA-OR-A5LO-01A-11D-A29I-10	1845158	54318528	36036225	117	11331										
CNOT1	23019	broad.mit.edu	37	chr16	58577421	58577421	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.113207547169811	18	0.00131594018804135	2.75335634829306	4.90919612794613	1.28555054086969	0.0277826702146408	0.344505110661546	11	ttattaagaataagtggtaaCgcccagtgccatatatagac	8	7	0	2	rs41260	bycluster;byfrequency;bysubmitter;by2hit2allele;by1000genomes	TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	CNOT1-95	NM_206999	exon31	c.G4524A	p.A1508A	TGGTAACGCCCAG	.	102	6	84	2	C|0.186;T|0.814	6	6	0	0	0	T	58577421	C	T	58577421	2	4	55	1	0	0	0	0	0	0	0	1	3623	523	19	1		1	CNOT1	16	58577421	Silent	SNP	C	TCGA-OR-A5LO-01A-11D-A29I-10	4258893	58577421	31777332	118	11332										
CTRL	1506	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr16	67963838	67963838	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.113207547169811	18	0.00131594018804135	2.75335634829306	4.90919612794613	1.28555054086969	0.0277826702146408	0.344505110661546	11	gggagggcctgtggtgagctCagttgtaggctatgacctgg	18	7	1	2	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	CTRL-90	NM_001907	exon7	c.G794C	p.X265S	TGAGCTCAGTTGT	.	82	19	54	0	.	2	0	2	0	0	G	67963838	C	G	67963838	3	3	55	1	0	0	0	0	1	0	0	0	4034	837	29	3	4	3	CTRL	16	67963838	Missense_Mutation	SNP	C	TCGA-OR-A5LO-01A-11D-A29I-10	9386417	67963838	22390915	119	11333										
FUK	197258	broad.mit.edu	37	chr16	70507049	70507049	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.113207547169811	18	0.00131594018804135	2.75335634829306	4.90919612794613	1.28555054086969	0.0277826702146408	0.344505110661546	11	aggccctgcgagcctggcggGcctcctggcgcctgtcctgg	16	16	0	0	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	FUK-91	NM_145059	exon15	c.G1570T	p.A524S	TGGCGGGCCTCCT	.	68	5	13	1	.	3	3	0	0	0	T	70507049	G	T	70507049	3	4	55	1	0	0	0	0	1	0	0	0	6115	1203	42	3	1624	3	FUK	16	70507049	Missense_Mutation	SNP	G	TCGA-OR-A5LO-01A-11D-A29I-10	2543211	70507049	19847704	120	11334										
MARVELD3	91862	broad.mit.edu	37	chr16	71660364	71660365	+	Frame_Shift_Del	DEL	GA	GA	-													0.113207547169811	18	0.00131594018804135	2.75335634829306	4.90919612794613	1.28555054086969	0.0277826702146408	0.344505110661546	11	ggaaccgggaccgggagaggGagagagagagggaaagagac					novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	MARVELD3-91	NM_001017967	exon1	c.232_233del	p.78_78del	GAGAGGGAGAGAG	.	228	9	93	0	.	0	0	0	0	0	-	71660365	GA	-	71660364	7	5	55	1	0	1	0	1	0	0	0	0	9347	1175	41	0	234	0	MARVELD3	16	71660364	Frame_Shift_Del	DEL	GA	TCGA-OR-A5LO-01A-11D-A29I-10	1153315	71660364	18694389	121	11335										
UNC45B	146862	broad.mit.edu	37	chr17	33475419	33475419	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.113207547169811	18	0.00131594018804135	2.75335634829306	4.90919612794613	1.28555054086969	0.0277826702146408	0.344505110661546	11	ggccctgctggccacgctttAtcggaaccgggcagcctgtg	14	14	0	0	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	UNC45B-157	NM_001267052	exon2	c.A137T	p.Y46F	CGCTTTATCGGAA	.	86	3	141	1	.	0	0	0	0	0	T	33475419	A	T	33475419	3	4	55	1	0	0	0	0	1	0	0	0	17027	449	16	5	139	5	UNC45B	17	33475419	Missense_Mutation	SNP	A	TCGA-OR-A5LO-01A-11D-A29I-10		33475419	47719791	122	11336										
MED1	5469	bcgsc.ca	37	chr17	37580917	37580917	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.113207547169811	18	0.00131594018804135	2.75335634829306	4.90919612794613	1.28555054086969	0.0277826702146408	0.344505110661546	11	atgtgaccccataattaatgGtgcaattgggagtttgtaca	10	6	0	1	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	MED1-620	NM_004774	exon11	c.C814A	p.P272T	TTAATGGTGCAAT	.	56	4	149	0	.	1	1	0	0	0	T	37580917	G	T	37580917	3	4	55	1	0	0	0	0	1	0	0	0	9453	1261	44	3	3959	3	MED1	17	37580917	Missense_Mutation	SNP	G	TCGA-OR-A5LO-01A-11D-A29I-10	4105498	37580917	43614293	123	11337										
KRTAP4-4	84616	bcgsc.ca	37	chr17	39316482	39316482	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.113207547169811	18	0.00131594018804135	2.75335634829306	4.90919612794613	1.28555054086969	0.0277826702146408	0.344505110661546	11	ccacaatggggcctgtagcaCctggacacacagcagctggg	13	13	0	0	rs366700	byfrequency	TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	KRTAP4-4-44	NM_032524	exon1	c.G462C	p.R154S	GTAGCACCTGGAC	.	116	6	274	2	C|0.485;G|0.515	0	0	0	0	0	G	39316482	C	G	39316482	3	3	55	1	0	0	0	0	1	0	0	0	8575	506	18	3	42	3	KRTAP4-4	17	39316482	Missense_Mutation	SNP	C	TCGA-OR-A5LO-01A-11D-A29I-10	1735565	39316482	41878728	124	11338										
ASB16	92591	hgsc.bcm.edu	37	chr17	42254281	42254281	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.113207547169811	18	0.00131594018804135	2.75335634829306	4.90919612794613	1.28555054086969	0.0277826702146408	0.344505110661546	11	agggcgagactgcgctgaacAcggcgtgcgctggggccgag	19	11	0	2	rs7212573	byfrequency	TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	ASB16-227	NM_080863	exon3	c.A745G	p.T249A	CTGAACACGGCGT	.	4	4	0	0	A|0.476;G|0.524	3	0	3	0	0	G	42254281	A	G	42254281	3	3	55	1	0	0	0	0	1	0	0	0	1021	159	6	4	755	4	ASB16	17	42254281	Missense_Mutation	SNP	A	TCGA-OR-A5LO-01A-11D-A29I-10	2937799	42254281	38940929	125	11339										
GFAP	2670	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	42989105	42989105	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.113207547169811	18	0.00131594018804135	2.75335634829306	4.90919612794613	1.28555054086969	0.0277826702146408	0.344505110661546	11	gcgccggtagtcgttggcttCgtgcttggcctggcggagca	17	11	0	0	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	GFAP-516	NM_001131019	exon5	c.G841T	p.E281X	TGGCTTCGTGCTT	.	86	70	106	0	.	0	0	0	0	0	A	42989105	C	A	42989105	4	1	55	1	0	0	0	0	0	1	0	0	6357	893	31	2	606	2	GFAP	17	42989105	Nonsense_Mutation	SNP	C	TCGA-OR-A5LO-01A-11D-A29I-10	734824	42989105	38206105	126	11340										
PRKAR1A	5573	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	66521052	66521052	+	Splice_Site	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.113207547169811	18	0.00131594018804135	2.75335634829306	4.90919612794613	1.28555054086969	0.0277826702146408	0.344505110661546	11	aacttttttaccctcttttaGgtgatgaaggggataacttc	8	7	1	2	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	PRKAR1A-1141	NM_212471	exon6	c.503-1G>A	.	CTTTTAGGTGATG	.	34	18	67	0	.	2	2	0	0	0	A	66521052	G	A	66521052	5	1	55	1	0	0	0	0	0	0	1	0	12535	1014	35	3	520	3	PRKAR1A	17	66521052	Splice_Site	SNP	G	TCGA-OR-A5LO-01A-11D-A29I-10	23531947	66521052	14674158	127	11341										
FASN	2194	hgsc.bcm.edu	37	chr17	80039129	80039129	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.113207547169811	18	0.00131594018804135	2.75335634829306	4.90919612794613	1.28555054086969	0.0277826702146408	0.344505110661546	11	cggacagcaccaggttgagcTcacgctccagcgtctggcgc	13	15	2	1	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	FASN-90	NM_004104	exon38	c.A6506T	p.E2169V	TTGAGCTCACGCT	.	208	14	85	0	.	62	62	0	0	0	A	80039129	T	A	80039129	3	1	55	1	0	0	0	0	1	0	0	0	5702	1551	54	5	1053	5	FASN	17	80039129	Missense_Mutation	SNP	T	TCGA-OR-A5LO-01A-11D-A29I-10	13518077	80039129	1156081	128	11342										
FASN	2194	hgsc.bcm.edu	37	chr17	80042498	80042498	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.113207547169811	18	0.00131594018804135	2.75335634829306	4.90919612794613	1.28555054086969	0.0277826702146408	0.344505110661546	11	ccagggcaggtgggctgggcAtggcgcagcgaggagcagac	20	10	0	1	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	FASN-90	NM_004104	exon27	c.T4659G	p.H1553Q	CTGGGCATGGCGC	.	195	26	112	0	.	81	81	0	0	0	C	80042498	A	C	80042498	3	2	55	1	0	0	0	0	1	0	0	0	5702	214	8	5	2944	5	FASN	17	80042498	Missense_Mutation	SNP	A	TCGA-OR-A5LO-01A-11D-A29I-10	3369	80042498	1152712	129	11343										
KISS1R	84634	hgsc.bcm.edu	37	chr19	920642	920642	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.113207547169811	18	0.00131594018804135	2.75335634829306	4.90919612794613	1.28555054086969	0.0277826702146408	0.344505110661546	11	agccccacacgcggagctgcTccgcctggggtcccacccgg	13	19	0	0	rs350132		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	KISS1R-91	NM_032551	exon5	c.T1091A	p.L364H	AGCTGCTCCGCCT	.	5	5	0	0	T|0.232;A|0.768	3	0	3	0	0	A	920642	T	A	920642	3	1	55	1	0	0	0	0	1	0	0	0	8349	1551	54	5	1109	5	KISS1R	19	920642	Missense_Mutation	SNP	T	TCGA-OR-A5LO-01A-11D-A29I-10		920642	58208341	130	11344										
ABCA7	10347	hgsc.bcm.edu	37	chr19	1065044	1065044	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.113207547169811	18	0.00131594018804135	2.75335634829306	4.90919612794613	1.28555054086969	0.0277826702146408	0.344505110661546	11	ctgcgcgaggcacatggaggCcgcctgcgcttccagctgcc	14	16	0	0	rs4147935	byfrequency	TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	ABCA7-98	NM_019112	exon46	c.C6159T	p.G2053G	TGGAGGCCGCCTG	.	11	8	0	0	C|0.766;T|0.234	7	4	3	0	0	T	1065044	C	T	1065044	2	4	55	1	0	0	0	0	0	0	0	1	37	726	26	3		3	ABCA7	19	1065044	Silent	SNP	C	TCGA-OR-A5LO-01A-11D-A29I-10	144402	1065044	58063939	131	11345										
SH3GL1	6455	broad.mit.edu	37	chr19	4361787	4361787	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.113207547169811	18	0.00131594018804135	2.75335634829306	4.90919612794613	1.28555054086969	0.0277826702146408	0.344505110661546	11	ccttgcagctcggctggtccAggggcgctgggggcgggagc	20	12	0	0	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	SH3GL1-659	NM_003025	exon10	c.T917G	p.L306R	TGGTCCAGGGGCG	.	52	7	13	0	.	4	2	2	0	0	C	4361787	A	C	4361787	3	2	55	1	0	0	0	0	1	0	0	0	14285	188	7	5	193	5	SH3GL1	19	4361787	Missense_Mutation	SNP	A	TCGA-OR-A5LO-01A-11D-A29I-10	3296743	4361787	54767196	132	11346										
MUC16	94025	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	9066010	9066010	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.113207547169811	18	0.00131594018804135	2.75335634829306	4.90919612794613	1.28555054086969	0.0277826702146408	0.344505110661546	11	aggtgaactggttacaagttCtgggcttgtgtgtaacatgt	13	5	1	1	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	MUC16-566	NM_024690	exon3	c.G21436C	p.E7146Q	CAAGTTCTGGGCT	.	489	216	326	0	.	0	0	0	0	0	G	9066010	C	G	9066010	3	3	55	1	0	0	0	0	1	0	0	0	10001	922	32	3	22415	3	MUC16	19	9066010	Missense_Mutation	SNP	C	TCGA-OR-A5LO-01A-11D-A29I-10	4704223	9066010	50062973	133	11347										
LDLR	3949	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	11234004	11234004	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.113207547169811	18	0.00131594018804135	2.75335634829306	4.90919612794613	1.28555054086969	0.0277826702146408	0.344505110661546	11	ctcaccacggtggagatagtGacaatgtctcaccaaggtaa	10	10	2	2	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	LDLR-94	NM_001195798	exon15	c.G2295C	p.V765V	GATAGTGACAATG	.	134	27	72	0	.	474	343	131	0	0	C	11234004	G	C	11234004	2	2	55	1	0	0	0	0	0	0	0	1	8726	1277	45	3		3	LDLR	19	11234004	Silent	SNP	G	TCGA-OR-A5LO-01A-11D-A29I-10	2167994	11234004	47894979	134	11348										
RNASEH2A	10535	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	12918306	12918306	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.113207547169811	18	0.00131594018804135	2.75335634829306	4.90919612794613	1.28555054086969	0.0277826702146408	0.344505110661546	11	agtatgcattggaccagggcGtgaacgtcacccaggtgagt	14	9	1	2	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	RNASEH2A-524	NM_006397	exon4	c.G397T	p.V133L	CAGGGCGTGAACG	.	296	134	188	0	.	25	13	12	0	0	T	12918306	G	T	12918306	3	4	55	1	0	0	0	0	1	0	0	0	13447	1145	40	2	411	2	RNASEH2A	19	12918306	Missense_Mutation	SNP	G	TCGA-OR-A5LO-01A-11D-A29I-10	1684302	12918306	46210677	135	11349										
RAD23A	5886	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	13063541	13063541	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.113207547169811	18	0.00131594018804135	2.75335634829306	4.90919612794613	1.28555054086969	0.0277826702146408	0.344505110661546	11	gagcagttcatccagatgctGaacgagccccctggggagct	13	12	1	2	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	RAD23A-227	NM_005053	exon8	c.G852A	p.L284L	GATGCTGAACGAG	.	151	36	123	0	.	187	122	65	0	0	A	13063541	G	A	13063541	2	1	55	1	0	0	0	0	0	0	0	1	13017	1277	45	3		3	RAD23A	19	13063541	Silent	SNP	G	TCGA-OR-A5LO-01A-11D-A29I-10	145235	13063541	46065442	136	11350										
PGLS	25796	hgsc.bcm.edu	37	chr19	17622614	17622614	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.113207547169811	18	0.00131594018804135	2.75335634829306	4.90919612794613	1.28555054086969	0.0277826702146408	0.344505110661546	11	gcgcccgtttcgcgctcggcCtgtcgggcgggagcctcgtc	16	16	0	0	rs11086075	byfrequency	TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	PGLS-90	NM_012088	exon1	c.C133T	p.L45L	CTCGGCCTGTCGG	.	8	8	0	0	C|0.617;T|0.383	18	0	18	0	0	T	17622614	C	T	17622614	2	4	55	1	0	0	0	0	0	0	0	1	11821	680	24	3		3	PGLS	19	17622614	Silent	SNP	C	TCGA-OR-A5LO-01A-11D-A29I-10	4559073	17622614	41506369	137	11351										
MEGF8	1954	broad.mit.edu	37	chr19	42867198	42867198	+	Splice_Site	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.113207547169811	18	0.00131594018804135	2.75335634829306	4.90919612794613	1.28555054086969	0.0277826702146408	0.344505110661546	11	aatccccgtgccccacccccAggggagacccgccgcatcct	9	21	0	1	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	MEGF8-23	NM_001271938	exon35	c.6059-2A>G	.	ACCCCCAGGGGAG	.	145	8	105	3	.	0	0	0	0	0	G	42867198	A	G	42867198	5	3	55	1	0	0	0	0	0	0	1	0	9491	202	7	4	5990	4	MEGF8	19	42867198	Splice_Site	SNP	A	TCGA-OR-A5LO-01A-11D-A29I-10	25244584	42867198	16261785	138	11352										
ZFP112	7771	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	44832623	44832623	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.113207547169811	18	0.00131594018804135	2.75335634829306	4.90919612794613	1.28555054086969	0.0277826702146408	0.344505110661546	11	gtggactctctgatgggcttGaagatatgaactccgactga	12	8	1	5	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	ZFP112-95	NM_001083335	exon5	c.C1705G	p.Q569E	GGGCTTGAAGATA	.	108	13	74	1	.	14	11	3	0	0	C	44832623	G	C	44832623	3	2	55	1	0	0	0	0	1	0	0	0	17675	1299	45	3	1040	3	ZFP112	19	44832623	Missense_Mutation	SNP	G	TCGA-OR-A5LO-01A-11D-A29I-10	1965425	44832623	14296360	139	11353										
ERCC2	2068	hgsc.bcm.edu	37	chr19	45867259	45867259	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.113207547169811	18	0.00131594018804135	2.75335634829306	4.90919612794613	1.28555054086969	0.0277826702146408	0.344505110661546	11	ctcaccctgcagcacttcgtCgggcagcacggggttggcca	13	15	1	0	rs1799793	byfrequency	TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	ERCC2-848	NM_000400	exon10	c.G934A	p.D312N	CTTCGTCGGGCAG	.	13	7	2	0	C|0.804;T|0.196	23	12	11	0	0	T	45867259	C	T	45867259	3	4	55	1	0	0	0	0	1	0	0	0	5226	884	31	1	1461	1	ERCC2	19	45867259	Missense_Mutation	SNP	C	TCGA-OR-A5LO-01A-11D-A29I-10	1034636	45867259	13261724	140	11354										
GIPR	2696	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	46176189	46176189	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.113207547169811	18	0.00131594018804135	2.75335634829306	4.90919612794613	1.28555054086969	0.0277826702146408	0.344505110661546	11	accatacacaatgtgagaacCcagagaagaatgaggccttt	9	9	0	4	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	GIPR-523	NM_000164	exon5	c.C361T	p.P121S	GAGAACCCAGAGA	.	151	30	115	0	.	0	0	0	0	0	T	46176189	C	T	46176189	3	4	55	1	0	0	0	0	1	0	0	0	6415	623	22	3	375	3	GIPR	19	46176189	Missense_Mutation	SNP	C	TCGA-OR-A5LO-01A-11D-A29I-10	308930	46176189	12952794	141	11355										
SLC1A5	6510	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	47278856	47278856	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.113207547169811	18	0.00131594018804135	2.75335634829306	4.90919612794613	1.28555054086969	0.0277826702146408	0.344505110661546	11	ggggtttccttcctcagtggGgactggcagcggatccaggg	17	10	1	0	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	SLC1A5-90	NM_005628	exon8	c.C1537G	p.P513A	CAGTGGGGACTGG	.	112	17	101	0	.	0	0	0	0	0	C	47278856	G	C	47278856	3	2	55	1	0	0	0	0	1	0	0	0	14470	1232	43	3	92	3	SLC1A5	19	47278856	Missense_Mutation	SNP	G	TCGA-OR-A5LO-01A-11D-A29I-10	1102667	47278856	11850127	142	11356										
GLTSCR1	29998	hgsc.bcm.edu	37	chr19	48184063	48184063	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.113207547169811	18	0.00131594018804135	2.75335634829306	4.90919612794613	1.28555054086969	0.0277826702146408	0.344505110661546	11	cgcacatcctctccgccgctCccatccaggtgggccagcct	9	20	1	0	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	GLTSCR1-48	NM_015711	exon6	c.C1636T	p.P546S	GCCGCTCCCATCC	.	49	9	0	0	.	2	2	0	0	0	T	48184063	C	T	48184063	3	4	55	1	0	0	0	0	1	0	0	0	6494	855	30	3	1650	3	GLTSCR1	19	48184063	Missense_Mutation	SNP	C	TCGA-OR-A5LO-01A-11D-A29I-10	905207	48184063	10944920	143	11357										
HRC	3270	hgsc.bcm.edu	37	chr19	49657889	49657889	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.113207547169811	18	0.00131594018804135	2.75335634829306	4.90919612794613	1.28555054086969	0.0277826702146408	0.344505110661546	11	tactcagtggaggcctcctcTtcctcctcctcctcctcctc	5	20	2	0	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	HRC-91	NM_002152	exon1	c.A606G	p.E202E	CTCCTCTTCCTCC	.	110	5	73	0	.	0	0	0	0	0	C	49657889	T	C	49657889	2	2	55	1	0	0	0	0	0	0	0	1	7373	1606	56	4		4	HRC	19	49657889	Silent	SNP	T	TCGA-OR-A5LO-01A-11D-A29I-10	1473826	49657889	9471094	144	11358										
HRC	3270	hgsc.bcm.edu	37	chr19	49657916	49657916	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.113207547169811	18	0.00131594018804135	2.75335634829306	4.90919612794613	1.28555054086969	0.0277826702146408	0.344505110661546	11	tcctcctcctcctcctcctcTtctccttcatcatcttcccc	0	23	5	0	rs7409255		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	HRC-91	NM_002152	exon1	c.A579G	p.E193E	CTCCTCTTCTCCT	.	100	6	82	0	.	0	0	0	0	0	C	49657916	T	C	49657916	2	2	55	1	0	0	0	0	0	0	0	1	7373	1606	56	4		4	HRC	19	49657916	Silent	SNP	T	TCGA-OR-A5LO-01A-11D-A29I-10	27	49657916	9471067	145	11359										
ZNF83	55769	bcgsc.ca	37	chr19	53116855	53116856	+	Missense_Mutation	DNP	CT	CT	TA													0.113207547169811	18	0.00131594018804135	2.75335634829306	4.90919612794613	1.28555054086969	0.0277826702146408	0.344505110661546	11	tgactgaagaccttgccacaCtcattacatttgtaaggttt					novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	CT	CT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	ZNF83-91	NM_018300	exon3	c.A962T	p.E321V	CCACACTCATTAC	.	192	0	126	0	.	0	0	0	0	0	TA	53116856	CT	TA	53116855	3	4	55	1	0	0	0	0	1	0	0	0	18220	564	20	3	591	3	ZNF83	19	53116855	Missense_Mutation	DNP	CT	TCGA-OR-A5LO-01A-11D-A29I-10	3458939	53116855	6012128	146	11360	125	2								
ZNF83	55769	bcgsc.ca	37	chr19	53116865	53116865	+	Missense_Mutation	SNP	T	T	C													0.113207547169811	18	0.00131594018804135	2.75335634829306	4.90919612794613	1.28555054086969	0.0277826702146408	0.344505110661546	11	ccttgccacactcattacatTtgtaaggtttctctccagta					rs141749555		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	ZNF83-91	NM_018300	exon3	c.A953G	p.K318R	TTACATTTGTAAG	.	187	9	121	0	T|1.000;C|0.000	216	216	0	0	0	C	53116865	T	C	53116865	3	2	55	1	0	0	0	0	1	0	0	0	18220	1841	64	4	601	4	ZNF83	19	53116865	Missense_Mutation	SNP	T	TCGA-OR-A5LO-01A-11D-A29I-10	10	53116865	6012118	147	11361	125	2								
NLRP12	91662	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	54313435	54313435	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.113207547169811	18	0.00131594018804135	2.75335634829306	4.90919612794613	1.28555054086969	0.0277826702146408	0.344505110661546	11	agatgttcatgttgaggaagGcagagacgtcttccccgtct	12	9	3	3	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	NLRP12-211	NM_144687	exon3	c.A1478T	p.N493I	AGGAAGGCAGAGA	.	257	41	157	0	.	0	0	0	0	0	A	54313435	G	A	54313435	3	1	55	1	0	0	0	0	1	0	0	0	10503	1203	42	3	1835	3	NLRP12	19	54313435	Missense_Mutation	SNP	G	TCGA-OR-A5LO-01A-11D-A29I-10	1196570	54313435	4815548	148	11362										
NLRP9	338321	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	56226564	56226564	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.113207547169811	18	0.00131594018804135	2.75335634829306	4.90919612794613	1.28555054086969	0.0277826702146408	0.344505110661546	11	tcggaaatggagtcacaggaGacagaggtgagacagcagta	15	6	1	3	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	NLRP9-294	NM_176820	exon6	c.C2358G	p.V786V	ACAGGAGACAGAG	.	170	30	130	0	.	0	0	0	0	0	C	56226564	G	C	56226564	2	2	55	1	0	0	0	0	0	0	0	1	10513	929	33	3		3	NLRP9	19	56226564	Silent	SNP	G	TCGA-OR-A5LO-01A-11D-A29I-10	1913129	56226564	2902419	149	11363										
ZNF135	7694	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	58579299	58579299	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.113207547169811	18	0.00131594018804135	2.75335634829306	4.90919612794613	1.28555054086969	0.0277826702146408	0.344505110661546	11	ggcagagcacacacctcaccCaacaccagcgaatccacaca	6	18	1	1	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	ZNF135-91	NM_007134	exon4	c.C1519A	p.Q507K	CTCACCCAACACC	.	204	44	128	0	.	0	0	0	0	0	A	58579299	C	A	58579299	3	1	55	1	0	0	0	0	1	0	0	0	17762	595	21	3	1650	3	ZNF135	19	58579299	Missense_Mutation	SNP	C	TCGA-OR-A5LO-01A-11D-A29I-10	2352735	58579299	549684	150	11364										
PAK7	57144	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr20	9538346	9538346	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.113207547169811	18	0.00131594018804135	2.75335634829306	4.90919612794613	1.28555054086969	0.0277826702146408	0.344505110661546	11	aggagagagctctcagaactGacaggcagacagtagctatc	12	9	1	4	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	PAK7-1434	NM_177990	exon7	c.C1652A	p.S551X	AGAACTGACAGGC	.	73	29	82	0	.	1	0	1	0	0	T	9538346	G	T	9538346	4	4	55	1	0	0	0	0	0	1	0	0	11434	1294	45	3	523	3	PAK7	20	9538346	Nonsense_Mutation	SNP	G	TCGA-OR-A5LO-01A-11D-A29I-10		9538346	53487174	151	11365										
DSCR6	53820	broad.mit.edu;ucsc.edu	37	chr21	38390362	38390362	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.113207547169811	18	0.00131594018804135	2.75335634829306	4.90919612794613	1.28555054086969	0.0277826702146408	0.344505110661546	11	gccccaggaggtgggaggtcGgcaggaaaatggcccagggg	20	9	0	0	rs150799198	byfrequency;alternate_allele	TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	DSCR6-153	NM_018962	exon4	c.G428T	p.R143L	GAGGTCGGCAGGA	.	35	4	33	0	G|0.999;A|0.001	0	0	0	0	0	T	38390362	G	T	38390362	3	4	55	1	0	0	0	0	1	0	0	0	4784	1116	39	2	442	2	DSCR6	21	38390362	Missense_Mutation	SNP	G	TCGA-OR-A5LO-01A-11D-A29I-10		38390362	9739533	152	11366										
PDE9A	5152	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr21	44185575	44185575	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.113207547169811	18	0.00131594018804135	2.75335634829306	4.90919612794613	1.28555054086969	0.0277826702146408	0.344505110661546	11	aagagaaaatggagaattttGactacagcaacgaggagcac	11	6	0	3	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	PDE9A-92	NM_002606	exon15	c.G1327C	p.D443H	AATTTTGACTACA	.	306	77	312	1	.	43	31	12	0	0	C	44185575	G	C	44185575	3	2	55	1	0	0	0	0	1	0	0	0	11684	1290	45	3	1465	3	PDE9A	21	44185575	Missense_Mutation	SNP	G	TCGA-OR-A5LO-01A-11D-A29I-10	5795213	44185575	3944320	153	11367										
POFUT2	23275	broad.mit.edu;mdanderson.org	37	chr21	46707762	46707762	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.113207547169811	18	0.00131594018804135	2.75335634829306	4.90919612794613	1.28555054086969	0.0277826702146408	0.344505110661546	11	ggacactgcccccagcagcaGgaagacgaagctgagtgtcg	14	12	0	2	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	POFUT2-90	NM_015227	exon1	c.C25T	p.L9L	GCAGCAGGAAGAC	.	22	8	13	0	.	44	27	17	0	0	A	46707762	G	A	46707762	2	1	55	1	0	0	0	0	0	0	0	1	12213	991	35	3		3	POFUT2	21	46707762	Silent	SNP	G	TCGA-OR-A5LO-01A-11D-A29I-10	2522187	46707762	1422133	154	11368										
OR11H1	81061	broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr22	16449102	16449102	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.113207547169811	18	0.00131594018804135	2.75335634829306	4.90919612794613	1.28555054086969	0.0277826702146408	0.344505110661546	11	caacatagctttcaggacaaGagtataggatccaataataa	7	7	1	1	rs76160964	alternate_allele	TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	OR11H1-22	NM_001005239	exon1	c.C703G	p.L235V	GGACAAGAGTATA	.	513	147	431	0	T|1.000;|0.000	0	0	0	0	0	C	16449102	G	C	16449102	3	2	55	1	0	0	0	0	1	0	0	0	10955	942	33	3	279	3	OR11H1	22	16449102	Missense_Mutation	SNP	G	TCGA-OR-A5LO-01A-11D-A29I-10		16449102	34855464	155	11369										
KLHL15	80311	hgsc.bcm.edu;bcgsc.ca	37	chrX	24006761	24006763	+	In_Frame_Del	DEL	ATC	ATC	-													0.113207547169811	18	0.00131594018804135	2.75335634829306	4.90919612794613	1.28555054086969	0.0277826702146408	0.344505110661546	11	tcagagcgtggtacagacatAtctgccatctgcagccagga					novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	ATC	ATC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	KLHL15-131	NM_030624	exon4	c.1090_1092del	p.364_364del	AGACATATCTGCC	.	231	103	166	1	.	0	0	0	0	0	-	24006763	ATC	-	24006761	7	5	55	1	0	1	0	1	0	0	0	0	8392	446	16	0	726	0	KLHL15	23	24006761	In_Frame_Del	DEL	ATC	TCGA-OR-A5LO-01A-11D-A29I-10		24006761	131263799	156	11370										
CXorf21	80231	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	30577888	30577888	+	Silent	SNP	C	C	T													0.113207547169811	18	0.00131594018804135	2.75335634829306	4.90919612794613	1.28555054086969	0.0277826702146408	0.344505110661546	11	tgcatttgcaagctgcttttCtctttgatgcttgttattct					novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	CXorf21-131	NM_025159	exon3	c.G585A	p.E195E	GCTTTTCTCTTTG	.	147	38	87	0	.	0	0	0	0	0	T	30577888	C	T	30577888	2	4	55	1	0	0	0	0	0	0	0	1	4107	912	32	3		3	CXorf21	23	30577888	Silent	SNP	C	TCGA-OR-A5LO-01A-11D-A29I-10	6571127	30577888	124692672	157	11371	126	2								
CXorf21	80231	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	30577890	30577890	+	Missense_Mutation	SNP	C	C	T													0.113207547169811	18	0.00131594018804135	2.75335634829306	4.90919612794613	1.28555054086969	0.0277826702146408	0.344505110661546	11	catttgcaagctgcttttctCtttgatgcttgttattctcc					novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	CXorf21-131	NM_025159	exon3	c.G583A	p.E195K	TTTTCTCTTTGAT	.	146	36	87	0	.	0	0	0	0	0	T	30577890	C	T	30577890	3	4	55	1	0	0	0	0	1	0	0	0	4107	922	32	3	326	3	CXorf21	23	30577890	Missense_Mutation	SNP	C	TCGA-OR-A5LO-01A-11D-A29I-10	2	30577890	124692670	158	11372	126	2								
TAF1	6872	ucsc.edu;bcgsc.ca	37	chrX	70587376	70587376	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.113207547169811	18	0.00131594018804135	2.75335634829306	4.90919612794613	1.28555054086969	0.0277826702146408	0.344505110661546	11	agaagcacttggcaggcttgGgggctttggggctgggcagc	19	8	0	1	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	TAF1-900	NM_004606	exon2	c.G208T	p.G70W	GGCTTGGGGGCTT	.	270	127	183	2	.	6	6	0	0	0	T	70587376	G	T	70587376	3	4	55	1	0	0	0	0	1	0	0	0	15550	1232	43	3	214	3	TAF1	23	70587376	Missense_Mutation	SNP	G	TCGA-OR-A5LO-01A-11D-A29I-10	40009486	70587376	84683184	159	11373										
HS6ST2	90161	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	132090979	132090979	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.113207547169811	18	0.00131594018804135	2.75335634829306	4.90919612794613	1.28555054086969	0.0277826702146408	0.344505110661546	11	gtttcccgcttacccggccgGtggcaagtgcatttcttctg	11	13	2	0	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	HS6ST2-130	NM_001077188	exon3	c.C804A	p.H268Q	CGGCCGGTGGCAA	.	519	111	256	0	.	0	0	0	0	0	T	132090979	G	T	132090979	3	4	55	1	0	0	0	0	1	0	0	0	7392	1252	44	3	1149	3	HS6ST2	23	132090979	Missense_Mutation	SNP	G	TCGA-OR-A5LO-01A-11D-A29I-10	61503603	132090979	23179581	160	11374										
L1CAM	3897	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	153133282	153133282	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.113207547169811	18	0.00131594018804135	2.75335634829306	4.90919612794613	1.28555054086969	0.0277826702146408	0.344505110661546	11	gggggcattgtggtcttctgCaggactccaggacacgcgca	15	11	2	0	novel		TCGA-OR-A5LO-01A-11D-A29I-10	TCGA-OR-A5LO-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	89d60dde-b03a-4cb7-b32a-5d06fa328603	4a5886aa-889d-4ef2-89a9-be2f7a06bd58	.	L1CAM-138	NM_000425	exon15	c.G1912T	p.A638S	CTTCTGCAGGACT	.	177	34	125	0	.	14	14	0	0	0	A	153133282	C	A	153133282	3	1	55	1	0	0	0	0	1	0	0	0	8610	710	25	3	1917	3	L1CAM	23	153133282	Missense_Mutation	SNP	C	TCGA-OR-A5LO-01A-11D-A29I-10	21042303	153133282	2137278	161	11375										
OPRD1	4985	hgsc.bcm.edu	37	chr1	29138975	29138975	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0340909090909091	3	1	0.89079754601227	1.21472392638037	0.785997834716709	1	1	0	ggacgcctaccctagcgcctGccccagcgctggcgccaatg	12	18	0	0	rs1042114	byfrequency	TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	.	OPRD1-69	NM_000911	exon1	c.G80T	p.C27F	GCGCCTGCCCCAG	.	8	8	0	0	G|0.061;T|0.939	0	0	0	0	0	T	29138975	G	T	29138975	3	4	56	1	0	0	0	0	1	0	0	0	10913	1319	46	3	82	3	OPRD1	1	29138975	Missense_Mutation	SNP	G	TCGA-OR-A5LP-01A-11D-A29I-10		29138975	220111646	1	11376										
CCDC30	728621	bcgsc.ca	37	chr1	43047057	43047057	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0340909090909091	3	1	0.89079754601227	1.21472392638037	0.785997834716709	1	1	0	gacctgcagcggaaattagaAcatgctcataaagtctgtct	9	9	3	1	rs12037518	byfrequency	TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	.	CCDC30-90	NM_001080850	exon8	c.A1092G	p.E364E	ATTAGAACATGCT	.	172	6	220	1	A|0.811;G|0.189	6	6	0	0	0	G	43047057	A	G	43047057	2	3	56	1	0	0	0	0	0	0	0	1	2811	40	2	4		4	CCDC30	1	43047057	Silent	SNP	A	TCGA-OR-A5LP-01A-11D-A29I-10	13908082	43047057	206203564	2	11377										
CTH	1491	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	70904780	70904784	+	Frame_Shift_Del	DEL	ATAGC	ATAGC	-													0.0340909090909091	3	1	0.89079754601227	1.21472392638037	0.785997834716709	1	1	0	ttttcttgtgcactgttattAtagcaccctccaagtggaag					novel		TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10	ATAGC	ATAGC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	.	CTH-91	NM_001902	exon12	c.1192_1192del	p.398_398del	GTTATTATAGCAC	.	84	33	132	0	.	0	0	0	0	0	-	70904784	ATAGC	-	70904780	7	5	56	1	0	1	0	1	0	0	0	0	4015	464	16	0		0	CTH	1	70904780	Frame_Shift_Del	DEL	ATAGC	TCGA-OR-A5LP-01A-11D-A29I-10	27857723	70904780	178345841	3	11378										
GPR88	54112	hgsc.bcm.edu	37	chr1	101005425	101005425	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0340909090909091	3	1	0.89079754601227	1.21472392638037	0.785997834716709	1	1	0	ctggccacgcagccactggtGtgggtgagcctggccagcgg	17	13	0	1	rs201200849	byfrequency	TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	.	GPR88-90	NM_022049	exon2	c.G903A	p.V301V	ACTGGTGTGGGTG	.	11	10	0	0	G|0.993;A|0.007	0	0	0	0	0	A	101005425	G	A	101005425	2	1	56	1	0	0	0	0	0	0	0	1	6737	1364	48	3		3	GPR88	1	101005425	Silent	SNP	G	TCGA-OR-A5LP-01A-11D-A29I-10	30100645	101005425	148245196	4	11379										
RSBN1	54665	hgsc.bcm.edu	37	chr1	114354654	114354654	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0340909090909091	3	1	0.89079754601227	1.21472392638037	0.785997834716709	1	1	0	acagttggggctgcattcgtTggcggcagcggcccaggatg	17	10	0	0	rs3195954	byfrequency	TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	.	RSBN1-91	NM_018364	exon1	c.A381G	p.P127P	ATTCGTTGGCGGC	.	15	11	2	0	T|0.861;C|0.139	3	0	3	0	0	C	114354654	T	C	114354654	2	2	56	1	0	0	0	0	0	0	0	1	13731	1799	63	4		4	RSBN1	1	114354654	Silent	SNP	T	TCGA-OR-A5LP-01A-11D-A29I-10	13349229	114354654	134895967	5	11380										
PLEKHO1	51177	ucsc.edu	37	chr1	150131221	150131221	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0340909090909091	3	1	0.89079754601227	1.21472392638037	0.785997834716709	1	1	0	gcagtctctcccgaccttggGaaaaaacagacaaaggggcc	11	12	1	1	novel		TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	.	PLEKHO1-226	NM_016274	exon6	c.G733A	p.E245K	CCTTGGGAAAAAA	.	125	2	151	0	.	59	46	13	0	0	A	150131221	G	A	150131221	3	1	56	1	0	0	0	0	1	0	0	0	12113	1175	41	3	755	3	PLEKHO1	1	150131221	Missense_Mutation	SNP	G	TCGA-OR-A5LP-01A-11D-A29I-10	35776567	150131221	99119400	6	11381										
CEP350	9857	ucsc.edu;bcgsc.ca	37	chr1	179956383	179956383	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0340909090909091	3	1	0.89079754601227	1.21472392638037	0.785997834716709	1	1	0	tttttttcccagcagatataAccacatcgtgggatgcactt	7	10	0	1	novel		TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	.	CEP350-26	NM_014810	exon3	c.A82G	p.T28A	GATATAACCACAT	.	34	4	57	0	.	0	0	0	0	0	G	179956383	A	G	179956383	3	3	56	1	0	0	0	0	1	0	0	0	3260	43	2	4	88	4	CEP350	1	179956383	Missense_Mutation	SNP	A	TCGA-OR-A5LP-01A-11D-A29I-10	29825162	179956383	69294238	7	11382										
RGL1	23179	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	183867009	183867009	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0340909090909091	3	1	0.89079754601227	1.21472392638037	0.785997834716709	1	1	0	ccagaagcgtacccagaggcGgctgcagctccagaaggaca	13	13	0	3	novel		TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	.	RGL1-725	NM_015149	exon11	c.G1313T	p.R438L	AGAGGCGGCTGCA	.	119	60	142	0	.	25	4	21	0	0	T	183867009	G	T	183867009	3	4	56	1	0	0	0	0	1	0	0	0	13311	1116	39	2	1351	2	RGL1	1	183867009	Missense_Mutation	SNP	G	TCGA-OR-A5LP-01A-11D-A29I-10	3910626	183867009	65383612	8	11383										
IKBKE	9641	bcgsc.ca	37	chr1	206651107	206651107	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0340909090909091	3	1	0.89079754601227	1.21472392638037	0.785997834716709	1	1	0	cgcaggtaccggatcaccacGgagaagccggctggggccat	15	13	1	1	rs2297545	byfrequency	TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	.	IKBKE-1061	NM_001193322	exon8	c.G717A	p.T239T	CACCACGGAGAAG	.	123	6	161	0	G|0.745;A|0.255	0	0	0	0	0	A	206651107	G	A	206651107	2	1	56	1	0	0	0	0	0	0	0	1	7633	1103	39	1		1	IKBKE	1	206651107	Silent	SNP	G	TCGA-OR-A5LP-01A-11D-A29I-10	22784098	206651107	42599514	9	11384										
KCTD3	51133	hgsc.bcm.edu	37	chr1	215741053	215741053	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0340909090909091	3	1	0.89079754601227	1.21472392638037	0.785997834716709	1	1	0	cgggagggcactgcggcagcTtccccgcggcggcggccggc	19	16	0	0	rs2275768	byfrequency	TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	.	KCTD3-93	NM_016121	exon1	c.T25G	p.F9V	GGCAGCTTCCCCG	.	8	7	0	0	T|0.721;G|0.279	9	0	8	1	0	G	215741053	T	G	215741053	3	3	56	1	0	0	0	0	1	0	0	0	8131	1609	56	5	27	5	KCTD3	1	215741053	Missense_Mutation	SNP	T	TCGA-OR-A5LP-01A-11D-A29I-10	9089946	215741053	33509568	10	11385										
OBSCN	84033	hgsc.bcm.edu	37	chr1	228399799	228399799	+	Silent	SNP	C	C	T													0.0340909090909091	3	1	0.89079754601227	1.21472392638037	0.785997834716709	1	1	0	gtggacgcggaggccgcgtgCgccgagcaggcgccgcactt					rs11582369	byfrequency	TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	.	OBSCN-403	NM_001271223	exon2	c.C315T	p.C105C	CGCGTGCGCCGAG	.	11	11	0	0	C|0.943;T|0.057	0	0	0	0	0	T	228399799	C	T	228399799	2	4	56	1	0	0	0	0	0	0	0	1	10841	776	27	1		1	OBSCN	1	228399799	Silent	SNP	C	TCGA-OR-A5LP-01A-11D-A29I-10	12658746	228399799	20850822	11	11386	127	2								
OBSCN	84033	hgsc.bcm.edu	37	chr1	228399803	228399803	+	Missense_Mutation	SNP	G	G	C													0.0340909090909091	3	1	0.89079754601227	1.21472392638037	0.785997834716709	1	1	0	acgcggaggccgcgtgcgccGagcaggcgccgcacttcctg					novel		TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	.	OBSCN-403	NM_001271223	exon2	c.G319C	p.E107Q	TGCGCCGAGCAGG	.	10	10	0	0	.	0	0	0	0	0	C	228399803	G	C	228399803	3	2	56	1	0	0	0	0	1	0	0	0	10841	1059	37	2	321	2	OBSCN	1	228399803	Missense_Mutation	SNP	G	TCGA-OR-A5LP-01A-11D-A29I-10	4	228399803	20850818	12	11387	127	2								
OBSCN	84033	hgsc.bcm.edu	37	chr1	228504669	228504669	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0340909090909091	3	1	0.89079754601227	1.21472392638037	0.785997834716709	1	1	0	cgcgacgccgtggcctctgcGcggctcaccgtgctgggtgg	17	15	2	0	rs61825302	bycluster;byfrequency;by1000genomes	TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	.	OBSCN-403	NM_001271223	exon62	c.G16416A	p.A5472A	CTCTGCGCGGCTC	.	8	6	0	0	G|0.841;A|0.159	0	0	0	0	0	A	228504669	G	A	228504669	2	1	56	1	0	0	0	0	0	0	0	1	10841	1074	38	1		1	OBSCN	1	228504669	Silent	SNP	G	TCGA-OR-A5LP-01A-11D-A29I-10	104866	228504669	20745952	13	11388										
RNF149	284996	hgsc.bcm.edu	37	chr2	101925026	101925026	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0340909090909091	3	1	0.89079754601227	1.21472392638037	0.785997834716709	1	1	0	cacgccgcgagccccgacgcTggcttcgcgccgccgccacg	13	21	0	0	rs11123868	byfrequency	TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	.	RNF149-290	NM_173647	exon1	c.A25G	p.S9G	CGACGCTGGCTTC	.	6	6	0	0	T|0.543;C|0.457	0	0	0	0	0	C	101925026	T	C	101925026	3	2	56	1	0	0	0	0	1	0	0	0	13485	1580	55	4	1205	4	RNF149	2	101925026	Missense_Mutation	SNP	T	TCGA-OR-A5LP-01A-11D-A29I-10		101925026	141274347	14	11389										
RANBP2	5903	broad.mit.edu;bcgsc.ca	37	chr2	109382319	109382319	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0340909090909091	3	1	0.89079754601227	1.21472392638037	0.785997834716709	1	1	0	caaggctccaaagagtggatTtgaaggaatgttcatcagga	12	6	2	2	novel		TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	.	RANBP2-675	NM_006267	exon20	c.T5324A	p.F1775Y	GTGGATTTGAAGG	.	299	10	346	0	.	12	12	0	0	0	A	109382319	T	A	109382319	3	1	56	1	0	0	0	0	1	0	0	0	13063	1841	64	5	5402	5	RANBP2	2	109382319	Missense_Mutation	SNP	T	TCGA-OR-A5LP-01A-11D-A29I-10	7457293	109382319	133817054	15	11390										
FOXD4L1	200350	mdanderson.org	37	chr2	114257443	114257443	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0340909090909091	3	1	0.89079754601227	1.21472392638037	0.785997834716709	1	1	0	tccggcgtaggaagcgtttcAagcgccaccaactgaccccg	11	15	1	1	novel		TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	.	FOXD4L1-84	NM_012184	exon1	c.A610C	p.K204Q	CGTTTCAAGCGCC	.	25	12	23	1	.	1	0	1	0	0	C	114257443	A	C	114257443	3	2	56	1	0	0	0	0	1	0	0	0	6019	131	5	5	612	5	FOXD4L1	2	114257443	Missense_Mutation	SNP	A	TCGA-OR-A5LP-01A-11D-A29I-10	4875124	114257443	128941930	16	11391										
C2orf54	79919	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	241835134	241835134	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0340909090909091	3	1	0.89079754601227	1.21472392638037	0.785997834716709	1	1	0	gggtggcctctggttcctcaAtcagtagagcctcggcatcc	12	13	3	1	novel		TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	.	C2orf54-90	NM_001085437	exon1	c.T281C	p.I94T	TCCTCAATCAGTA	.	186	118	196	0	.	0	0	0	0	0	G	241835134	A	G	241835134	3	3	56	1	0	0	0	0	1	0	0	0	2181	101	4	4	1096	4	C2orf54	2	241835134	Missense_Mutation	SNP	A	TCGA-OR-A5LP-01A-11D-A29I-10	127577691	241835134	1364239	17	11392										
TSC22D2	9819	hgsc.bcm.edu	37	chr3	150128392	150128392	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0340909090909091	3	1	0.89079754601227	1.21472392638037	0.785997834716709	1	1	0	ccgtgggcaccggccagaatGcttcctcggtgggcgcgcag	16	14	0	1	rs879634	byfrequency	TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	.	TSC22D2-91	NM_014779	exon1	c.G1255A	p.A419T	CAGAATGCTTCCT	.	9	9	0	0	G|0.797;A|0.203	2	0	2	0	0	A	150128392	G	A	150128392	3	1	56	1	0	0	0	0	1	0	0	0	16646	1319	46	3	1257	3	TSC22D2	3	150128392	Missense_Mutation	SNP	G	TCGA-OR-A5LP-01A-11D-A29I-10		150128392	47894038	18	11393										
FAT4	79633	bcgsc.ca	37	chr4	126238924	126238924	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0340909090909091	3	1	0.89079754601227	1.21472392638037	0.785997834716709	1	1	0	gccccctggcgcagcagtccAggcgcgctcttctgtggcaa	13	16	2	0	rs6847454	byfrequency	TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	.	FAT4-108	NM_024582	exon1	c.A1358T	p.Q453L	CAGTCCAGGCGCG	.	207	7	260	3	A|0.518;T|0.482	2	2	0	0	0	T	126238924	A	T	126238924	3	4	56	1	0	0	0	0	1	0	0	0	5711	188	7	5	1360	5	FAT4	4	126238924	Missense_Mutation	SNP	A	TCGA-OR-A5LP-01A-11D-A29I-10		126238924	64915352	19	11394										
EDIL3	10085	bcgsc.ca	37	chr5	83259162	83259162	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0340909090909091	3	1	0.89079754601227	1.21472392638037	0.785997834716709	1	1	0	atgatgccagtcactttggtTggaacaagaagatccacctt	9	9	1	3	novel		TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	.	EDIL3-131	NM_005711	exon10	c.A1155G	p.P385P	TTTGGTTGGAACA	.	93	6	60	0	.	133	133	0	0	0	C	83259162	T	C	83259162	2	2	56	1	0	0	0	0	0	0	0	1	4926	1799	63	4		4	EDIL3	5	83259162	Silent	SNP	T	TCGA-OR-A5LP-01A-11D-A29I-10		83259162	97656098	20	11395										
MAN2A1	4124	broad.mit.edu;bcgsc.ca	37	chr5	109091082	109091082	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0340909090909091	3	1	0.89079754601227	1.21472392638037	0.785997834716709	1	1	0	caggtggctgggttatgcctGatgaagctactccacattat	11	9	0	2	novel		TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	.	MAN2A1-92	NM_002372	exon5	c.G760A	p.D254N	ATGCCTGATGAAG	.	147	8	116	0	.	22	22	0	0	0	A	109091082	G	A	109091082	3	1	56	1	0	0	0	0	1	0	0	0	9242	1290	45	3	778	3	MAN2A1	5	109091082	Missense_Mutation	SNP	G	TCGA-OR-A5LP-01A-11D-A29I-10	25831920	109091082	71824178	21	11396										
ATXN1	6310	broad.mit.edu	37	chr6	16327864	16327865	+	In_Frame_Ins	INS	-	-	TGC													0.0340909090909091	3	1	0.89079754601227	1.21472392638037	0.785997834716709	1	1	0	gccccggagccctgctgaggINStgctgctgctgctgctgctg					rs71806515		TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	.	ATXN1-93	NM_001128164	exon7	c.678_679insGCA	p.H226delinsQH	GCTGAGGTGCTGC	.	48	14	39	0	.	0	0	0	0	0	TGC	16327865	-	TGC	16327864	7	5	56	1	0	1	1	0	0	0	0	0	1210	1252	44	0	1777	0	ATXN1	6	16327864	In_Frame_Ins	INS	-	TCGA-OR-A5LP-01A-11D-A29I-10		16327864	154787203	22	11397										
MCCD1	401250	bcgsc.ca	37	chr6	31497706	31497706	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0340909090909091	3	1	0.89079754601227	1.21472392638037	0.785997834716709	1	1	0	caagagagccttggaggaggCgcctaagtttcccccagtgc	13	12	0	1	rs2075582	byfrequency	TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	.	MCCD1-90	NM_001011700	exon2	c.C354T	p.G118G	AGGAGGCGCCTAA	.	205	8	230	1	C|0.215;T|0.785	0	0	0	0	0	T	31497706	C	T	31497706	2	4	56	1	0	0	0	0	0	0	0	1	9404	755	27	1		1	MCCD1	6	31497706	Silent	SNP	C	TCGA-OR-A5LP-01A-11D-A29I-10	15169842	31497706	139617361	23	11398										
TNRC18	84629	hgsc.bcm.edu	37	chr7	5372499	5372499	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0340909090909091	3	1	0.89079754601227	1.21472392638037	0.785997834716709	1	1	0	agcttccgggccttgcgcccCttctccaccgccagcttggc	10	19	1	0	rs113405524		TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	.	TNRC18-46	NM_001080495	exon19	c.G5901A	p.K1967K	GCGCCCCTTCTCC	.	8	4	0	0	C|0.989;T|0.011	0	0	0	0	0	T	5372499	C	T	5372499	2	4	56	1	0	0	0	0	0	0	0	1	16376	680	24	3		3	TNRC18	7	5372499	Silent	SNP	C	TCGA-OR-A5LP-01A-11D-A29I-10		5372499	153766164	24	11399										
RAPGEF5	9771	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr7	22348060	22348060	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0340909090909091	3	1	0.89079754601227	1.21472392638037	0.785997834716709	1	1	0	tttcaaattcacagtacaagTagctacattcatcagaggaa	6	8	4	1	novel		TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	.	RAPGEF5-206	NM_012294	exon5	c.A119G	p.Y40C	TACAAGTAGCTAC	.	117	7	62	0	.	0	0	0	0	0	C	22348060	T	C	22348060	3	2	56	1	0	0	0	0	1	0	0	0	13082	1638	57	4	2161	4	RAPGEF5	7	22348060	Missense_Mutation	SNP	T	TCGA-OR-A5LP-01A-11D-A29I-10	16975561	22348060	136790603	25	11400										
GARS	2617	hgsc.bcm.edu	37	chr7	30634661	30634661	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0340909090909091	3	1	0.89079754601227	1.21472392638037	0.785997834716709	1	1	0	ccctcagcgcggcctcctgcCccccgatctccttgcccgcc	8	24	2	0	rs1049402	byfrequency	TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	.	GARS-91	NM_002047	exon1	c.C124G	p.P42A	TCCTGCCCCCCGA	.	7	7	0	0	C|0.329;G|0.671	104	0	104	0	0	G	30634661	C	G	30634661	3	3	56	1	0	0	0	0	1	0	0	0	6262	623	22	3	126	3	GARS	7	30634661	Missense_Mutation	SNP	C	TCGA-OR-A5LP-01A-11D-A29I-10	8286601	30634661	128504002	26	11401										
RAMP3	10268	hgsc.bcm.edu	37	chr7	45197433	45197433	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0340909090909091	3	1	0.89079754601227	1.21472392638037	0.785997834716709	1	1	0	tgcggccggccagccatggaGactggagcgctgcggcgccc	17	15	0	1	rs67477213		TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	.	RAMP3-90	NM_005856	exon1	c.G6A	p.E2E	CATGGAGACTGGA	.	6	6	0	0	G|0.760;A|0.240	36	0	36	0	0	A	45197433	G	A	45197433	2	1	56	1	0	0	0	0	0	0	0	1	13058	933	33	3		3	RAMP3	7	45197433	Silent	SNP	G	TCGA-OR-A5LP-01A-11D-A29I-10	14562772	45197433	113941230	27	11402										
COBL	23242	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	51111334	51111334	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0340909090909091	3	1	0.89079754601227	1.21472392638037	0.785997834716709	1	1	0	gtctcctccgcctctgacagCacctgcggggctccatccgg	11	18	2	1	novel		TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	.	COBL-95	NM_015198	exon8	c.G1152T	p.V384V	TGACAGCACCTGC	.	104	43	81	0	.	0	0	0	0	0	A	51111334	C	A	51111334	2	1	56	1	0	0	0	0	0	0	0	1	3659	697	25	3		3	COBL	7	51111334	Silent	SNP	C	TCGA-OR-A5LP-01A-11D-A29I-10	5913901	51111334	108027329	28	11403										
POM121L12	285877	hgsc.bcm.edu;broad.mit.edu	37	chr7	53103693	53103693	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0340909090909091	3	1	0.89079754601227	1.21472392638037	0.785997834716709	1	1	0	cggggagaccgctctggggcGagacctctcctgtgcctggg	17	13	2	2	novel		TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	.	.	NM_182595	exon1	c.G329T	p.R110L	TGGGGCGAGACCT	.	82	8	21	0	.	0	0	0	0	0	T	53103693	G	T	53103693	3	4	56	1	0	0	0	0	1	0	0	0	12270	1058	37	2	331	2	POM121L12	7	53103693	Missense_Mutation	SNP	G	TCGA-OR-A5LP-01A-11D-A29I-10	1992359	53103693	106034970	29	11404										
MLL3	58508	bcgsc.ca	37	chr7	151962269	151962269	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0340909090909091	3	1	0.89079754601227	1.21472392638037	0.785997834716709	1	1	0	aggtctcccgggctgtcgcaCactgcacagtttgcatcttc	10	14	2	0	novel		TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	.	MLL3-1398	NM_170606	exon8	c.G1038A	p.V346V	GTCGCACACTGCA	.	264	25	309	9	.	1	1	0	0	0	T	151962269	C	T	151962269	2	4	56	1	0	0	0	0	0	0	0	1	9650	465	17	3		3	MLL3	7	151962269	Silent	SNP	C	TCGA-OR-A5LP-01A-11D-A29I-10	98858576	151962269	7176394	30	11405										
NOM1	64434	hgsc.bcm.edu	37	chr7	156742501	156742501	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0340909090909091	3	1	0.89079754601227	1.21472392638037	0.785997834716709	1	1	0	gacgcgtggtccgcatgaagCgcagaggcgggcgcgggccg	20	12	0	2	rs6969990	byfrequency	TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	.	NOM1-90	NM_138400	exon1	c.C70G	p.R24G	ATGAAGCGCAGAG	.	7	4	1	0	C|0.663;G|0.337	1	0	1	0	0	G	156742501	C	G	156742501	3	3	56	1	0	0	0	0	1	0	0	0	10559	768	27	2	72	2	NOM1	7	156742501	Missense_Mutation	SNP	C	TCGA-OR-A5LP-01A-11D-A29I-10	4780232	156742501	2396162	31	11406										
DLGAP2	9228	broad.mit.edu	37	chr8	1626628	1626628	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0340909090909091	3	1	0.89079754601227	1.21472392638037	0.785997834716709	1	1	0	ctccaccctgccccctccagAcccctggctggagcccgcca	8	23	0	1	novel		TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	.	DLGAP2-22	NM_004745	exon9	c.A2297C	p.D766A	CTCCAGACCCCTG	.	77	13	97	17	.	0	0	0	0	0	C	1626628	A	C	1626628	3	2	56	1	0	0	0	0	1	0	0	0	4571	275	10	5	2327	5	DLGAP2	8	1626628	Missense_Mutation	SNP	A	TCGA-OR-A5LP-01A-11D-A29I-10		1626628	144737394	32	11407										
EPPK1	83481	hgsc.bcm.edu	37	chr8	144940658	144940658	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0340909090909091	3	1	0.89079754601227	1.21472392638037	0.785997834716709	1	1	0	gcaccagggccgtgccgggcCgcagcacgcccttccacatg	13	18	0	0	rs201270359		TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	.	EPPK1-25	NM_031308	exon1	c.G6764A	p.R2255Q	CCGGGCCGCAGCA	.	32	15	2	0	.	0	0	0	0	0	T	144940658	C	T	144940658	3	4	56	1	0	0	0	0	1	0	0	0	5203	652	23	1	502	1	EPPK1	8	144940658	Missense_Mutation	SNP	C	TCGA-OR-A5LP-01A-11D-A29I-10	143314030	144940658	1423364	33	11408										
CTSL1	1514	ucsc.edu;bcgsc.ca	37	chr9	90346015	90346015	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0340909090909091	3	1	0.89079754601227	1.21472392638037	0.785997834716709	1	1	0	ctcagcagccagctaccccaCtgtgtgagctggtggacggt	13	13	1	1	novel		TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	.	CTSL1-93	NM_145918	exon8	c.C995G	p.T332S	ACCCCACTGTGTG	.	89	49	124	2	.	325	49	276	0	0	G	90346015	C	G	90346015	3	3	56	1	0	0	0	0	1	0	0	0	4044	565	20	3	1021	3	CTSL1	9	90346015	Missense_Mutation	SNP	C	TCGA-OR-A5LP-01A-11D-A29I-10		90346015	50867416	34	11409										
SECISBP2	79048	ucsc.edu	37	chr9	91947874	91947874	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0340909090909091	3	1	0.89079754601227	1.21472392638037	0.785997834716709	1	1	0	aatctgtaactgctaatgccGctaccaattctccttcatgt	5	12	3	0	novel		TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	.	SECISBP2-93	NM_024077	exon6	c.G853A	p.A285T	AATGCCGCTACCA	.	38	4	71	1	.	26	26	0	0	0	A	91947874	G	A	91947874	3	1	56	1	0	0	0	0	1	0	0	0	14041	1087	38	1	875	1	SECISBP2	9	91947874	Missense_Mutation	SNP	G	TCGA-OR-A5LP-01A-11D-A29I-10	1601859	91947874	49265557	35	11410										
PALM2-AKAP2	445815	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	112899504	112899504	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0340909090909091	3	1	0.89079754601227	1.21472392638037	0.785997834716709	1	1	0	ttctctgctgctcgcaaacaAtttcagctgatggagaattc	8	10	2	2	novel		TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	.	PALM2-AKAP2-475	NM_007203	exon8	c.A1680T	p.Q560H	CAAACAATTTCAG	.	70	13	96	0	.	26	18	8	0	0	T	112899504	A	T	112899504	3	4	56	1	0	0	0	0	1	0	0	0	11439	98	4	5	1710	5	PALM2-AKAP2	9	112899504	Missense_Mutation	SNP	A	TCGA-OR-A5LP-01A-11D-A29I-10	20951630	112899504	28313927	36	11411										
GSN	2934	bcgsc.ca	37	chr9	124083614	124083614	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0340909090909091	3	1	0.89079754601227	1.21472392638037	0.785997834716709	1	1	0	tatggacagttctatggaggCgacagctacatcattctgta	10	8	3	0	rs2304393	byfrequency	TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	.	GSN-154	NM_000177	exon10	c.C1413T	p.G471G	TGGAGGCGACAGC	.	95	6	133	1	C|0.923;T|0.077	286	286	0	0	0	T	124083614	C	T	124083614	2	4	56	1	0	0	0	0	0	0	0	1	6846	755	27	1		1	GSN	9	124083614	Silent	SNP	C	TCGA-OR-A5LP-01A-11D-A29I-10	11184110	124083614	17129817	37	11412										
NR5A1	2516	broad.mit.edu	37	chr9	127262468	127262468	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0340909090909091	3	1	0.89079754601227	1.21472392638037	0.785997834716709	1	1	0	aggccgaaggccgccggctgGtcggggcggcttttggtggg	21	10	0	0	novel		TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	.	NR5A1-186	NM_004959	exon4	c.C771G	p.D257E	CGGCTGGTCGGGG	.	71	3	31	0	.	49	49	0	0	0	C	127262468	G	C	127262468	3	2	56	1	0	0	0	0	1	0	0	0	10664	1252	44	3	630	3	NR5A1	9	127262468	Missense_Mutation	SNP	G	TCGA-OR-A5LP-01A-11D-A29I-10	3178854	127262468	13950963	38	11413										
COL5A1	1289	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	137676893	137676893	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0340909090909091	3	1	0.89079754601227	1.21472392638037	0.785997834716709	1	1	0	ccctgaaggcccaaagggtcGcggaggtcccaatggtgacc	14	13	0	2	novel		TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	.	COL5A1-524	NM_000093	exon30	c.G2543A	p.R848H	AGGGTCGCGGAGG	.	56	7	59	0	.	9	6	3	0	0	A	137676893	G	A	137676893	3	1	56	1	0	0	0	0	1	0	0	0	3702	1087	38	1	2661	1	COL5A1	9	137676893	Missense_Mutation	SNP	G	TCGA-OR-A5LP-01A-11D-A29I-10	10414425	137676893	3536538	39	11414										
CSGALNACT2	55454	broad.mit.edu	37	chr10	43659419	43659419	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0340909090909091	3	1	0.89079754601227	1.21472392638037	0.785997834716709	1	1	0	tgggacaagggagaggtcttGatgtttttctgtgatgttga	15	3	2	4	rs79064394		TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	.	CSGALNACT2-69	NM_018590	exon5	c.G1086T	p.L362F	GGTCTTGATGTTT	.	140	4	139	0	.	9	9	0	0	0	T	43659419	G	T	43659419	3	4	56	1	0	0	0	0	1	0	0	0	3945	1281	45	3	1100	3	CSGALNACT2	10	43659419	Missense_Mutation	SNP	G	TCGA-OR-A5LP-01A-11D-A29I-10		43659419	91875328	40	11415										
ARHGAP22	58504	hgsc.bcm.edu	37	chr10	49659006	49659006	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0340909090909091	3	1	0.89079754601227	1.21472392638037	0.785997834716709	1	1	0	gggaagaggtcctgtgcgcgGgcaggccggggccgccgggc	22	12	0	1	rs80345791		TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	.	ARHGAP22-228	NM_001256024	exon9	c.C1214T	p.P405L	TGCGCGGGCAGGC	.	13	10	0	0	G|0.987;A|0.013	2	0	2	0	0	A	49659006	G	A	49659006	3	1	56	1	0	0	0	0	1	0	0	0	872	1232	43	3	938	3	ARHGAP22	10	49659006	Missense_Mutation	SNP	G	TCGA-OR-A5LP-01A-11D-A29I-10	5999587	49659006	85875741	41	11416										
GLUD1	2746	broad.mit.edu	37	chr10	88817461	88817461	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0340909090909091	3	1	0.89079754601227	1.21472392638037	0.785997834716709	1	1	0	cactcaccgatatcctgtctTggaactctgccgtgggtaca	9	13	3	0	novel		TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	.	GLUD1-90	NM_005271	exon11	c.A1481G	p.Q494R	CTGTCTTGGAACT	.	82	4	123	0	.	0	0	0	0	0	C	88817461	T	C	88817461	3	2	56	1	0	0	0	0	1	0	0	0	6496	1812	63	4	207	4	GLUD1	10	88817461	Missense_Mutation	SNP	T	TCGA-OR-A5LP-01A-11D-A29I-10	39158455	88817461	46717286	42	11417										
TBC1D12	23232	hgsc.bcm.edu	37	chr10	96163039	96163039	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0340909090909091	3	1	0.89079754601227	1.21472392638037	0.785997834716709	1	1	0	agcgactcgggggacagcccCgccagcagctgcagcagtag	15	14	0	0	rs2477534	byfrequency	TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	.	TBC1D12-68	NM_015188	exon1	c.C669G	p.P223P	CAGCCCCGCCAGC	.	14	14	0	0	C|0.339;G|0.661	0	0	0	0	0	G	96163039	C	G	96163039	2	3	56	1	0	0	0	0	0	0	0	1	15638	639	23	2		2	TBC1D12	10	96163039	Silent	SNP	C	TCGA-OR-A5LP-01A-11D-A29I-10	7345578	96163039	39371708	43	11418										
MKI67	4288	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr10	129913821	129913821	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0340909090909091	3	1	0.89079754601227	1.21472392638037	0.785997834716709	1	1	0	tacgcgagaccaacagttggGtctccccctgtaaaccatca	8	14	2	1	novel		TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	.	MKI67-519	NM_002417	exon7	c.C851A	p.T284N	AGTTGGGTCTCCC	.	69	40	88	0	.	0	0	0	0	0	T	129913821	G	T	129913821	3	4	56	1	0	0	0	0	1	0	0	0	9626	1261	44	3	8955	3	MKI67	10	129913821	Missense_Mutation	SNP	G	TCGA-OR-A5LP-01A-11D-A29I-10	33750782	129913821	5620926	44	11419										
PWWP2B	170394	hgsc.bcm.edu	37	chr10	134218296	134218296	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0340909090909091	3	1	0.89079754601227	1.21472392638037	0.785997834716709	1	1	0	ttcagccccccgagaccaccCgccccgagccacccccgccc	7	26	1	1	rs10747057	byfrequency	TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	.	PWWP2B-90	NM_001098637	exon2	c.C292G	p.R98G	ACCACCCGCCCCG	.	7	6	0	0	C|0.431;G|0.569	21	0	21	0	0	G	134218296	C	G	134218296	3	3	56	1	0	0	0	0	1	0	0	0	12881	652	23	2	298	2	PWWP2B	10	134218296	Missense_Mutation	SNP	C	TCGA-OR-A5LP-01A-11D-A29I-10	4304475	134218296	1316451	45	11420										
PWWP2B	170394	hgsc.bcm.edu	37	chr10	134219045	134219045	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0340909090909091	3	1	0.89079754601227	1.21472392638037	0.785997834716709	1	1	0	ggggacagcgagcacgagccCgtgtaccgggccgagctggt	18	12	0	0	rs11146364	byfrequency	TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	.	PWWP2B-90	NM_001098637	exon2	c.C1041T	p.P347P	CGAGCCCGTGTAC	.	5	5	1	0	C|0.860;T|0.140	65	2	63	0	0	T	134219045	C	T	134219045	2	4	56	1	0	0	0	0	0	0	0	1	12881	639	23	1		1	PWWP2B	10	134219045	Silent	SNP	C	TCGA-OR-A5LP-01A-11D-A29I-10	749	134219045	1315702	46	11421										
MUC5B	727897	hgsc.bcm.edu	37	chr11	1253980	1253980	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0340909090909091	3	1	0.89079754601227	1.21472392638037	0.785997834716709	1	1	0	caagggcgtacagctcagcgActggagggacggcgtctgca	16	11	2	0	rs202127660		TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	.	.	NM_002458	exon17	c.A2045G	p.D682G	TCAGCGACTGGAG	.	97	6	29	0	.	0	0	0	0	0	G	1253980	A	G	1253980	3	3	56	1	0	0	0	0	1	0	0	0	10007	275	10	4	2120	4	MUC5B	11	1253980	Missense_Mutation	SNP	A	TCGA-OR-A5LP-01A-11D-A29I-10		1253980	133752536	47	11422										
LSP1	4046	broad.mit.edu	37	chr11	1887806	1887806	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0340909090909091	3	1	0.89079754601227	1.21472392638037	0.785997834716709	1	1	0	ccctggctgggcacacctcaTcccagcctccccctacccct	6	23	1	0	rs7938342	byfrequency	TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	.	LSP1-90	NM_001242932	exon2	c.T102A	p.H34Q	ACCTCATCCCAGC	.	59	4	65	0	T|0.345;A|0.655	3	3	0	0	0	A	1887806	T	A	1887806	3	1	56	1	0	0	0	0	1	0	0	0	9090	1450	50	5		5	LSP1	11	1887806	Missense_Mutation	SNP	T	TCGA-OR-A5LP-01A-11D-A29I-10	633826	1887806	133118710	48	11423										
ANO5	203859	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	22279254	22279254	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0340909090909091	3	1	0.89079754601227	1.21472392638037	0.785997834716709	1	1	0	accttacatgcctctatacaCgcgtattccatggtactttc	5	13	1	0	rs148698633		TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	.	ANO5-515	NM_213599	exon14	c.C1361T	p.T454M	TATACACGCGTAT	.	87	42	107	0	C|1.000;T|0.000	6	0	6	0	0	T	22279254	C	T	22279254	3	4	56	1	0	0	0	0	1	0	0	0	700	536	19	1	1415	1	ANO5	11	22279254	Missense_Mutation	SNP	C	TCGA-OR-A5LP-01A-11D-A29I-10	20391448	22279254	112727262	49	11424										
CST6	1474	hgsc.bcm.edu	37	chr11	65779590	65779590	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0340909090909091	3	1	0.89079754601227	1.21472392638037	0.785997834716709	1	1	0	ctcctggcgctgccacgcgaCgcccgggcccggccgcagga	15	19	0	0	rs1131544		TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	.	CST6-523	NM_001323	exon1	c.C75T	p.D25D	ACGCGACGCCCGG	.	5	5	0	0	C|0.921;T|0.079	0	0	0	0	0	T	65779590	C	T	65779590	2	4	56	1	0	0	0	0	0	0	0	1	3982	535	19	1		1	CST6	11	65779590	Silent	SNP	C	TCGA-OR-A5LP-01A-11D-A29I-10	43500336	65779590	69226926	50	11425										
TNFRSF1A	7132	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	6439136	6439136	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0340909090909091	3	1	0.89079754601227	1.21472392638037	0.785997834716709	1	1	0	ggaggtgaaggtggaactggGcacgggactgaagcccaggg	20	7	0	2	novel		TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	.	TNFRSF1A-659	NM_001065	exon9	c.C865G	p.P289A	AACTGGGCACGGG	.	38	14	30	0	.	319	185	134	0	0	C	6439136	G	C	6439136	3	2	56	1	0	0	0	0	1	0	0	0	16330	1203	42	3	510	3	TNFRSF1A	12	6439136	Missense_Mutation	SNP	G	TCGA-OR-A5LP-01A-11D-A29I-10		6439136	127412759	51	11426										
LAG3	3902	hgsc.bcm.edu	37	chr12	6887493	6887494	+	In_Frame_Ins	INS	-	-	CCGGAG													0.0340909090909091	3	1	0.89079754601227	1.21472392638037	0.785997834716709	1	1	0	tagaggagctggagcaagaaINSccggagccggagccggagcc					novel		TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	.	LAG3-90	NM_002286	exon8	c.1515_1516insCCGGAG	p.E505delinsEPE	GCAAGAACCGGAG	.	84	22	37	0	.	0	0	0	0	0	CCGGAG	6887494	-	CCGGAG	6887493	7	5	56	1	0	1	1	0	0	0	0	0	8622	40	2	0	1545	0	LAG3	12	6887493	In_Frame_Ins	INS	-	TCGA-OR-A5LP-01A-11D-A29I-10	448357	6887493	126964402	52	11427										
LRIG3	121227	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	59268001	59268001	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0340909090909091	3	1	0.89079754601227	1.21472392638037	0.785997834716709	1	1	0	gccacgatatattactgaagCtccgttcgcaggattcttct	8	11	2	1	novel		TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	.	LRIG3-229	NM_153377	exon18	c.G2951A	p.S984N	CTGAAGCTCCGTT	.	227	76	181	0	.	14	8	6	0	0	T	59268001	C	T	59268001	3	4	56	1	0	0	0	0	1	0	0	0	8973	797	28	3	416	3	LRIG3	12	59268001	Missense_Mutation	SNP	C	TCGA-OR-A5LP-01A-11D-A29I-10	52380508	59268001	74583894	53	11428										
PLA2G1B	5319	broad.mit.edu	37	chr12	120763699	120763700	+	Frame_Shift_Ins	INS	-	-	A													0.0340909090909091	3	1	0.89079754601227	1.21472392638037	0.785997834716709	1	1	0	cgggggtgcctgagccccccINSaagccacagtagcagccgta					novel		TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	.	PLA2G1B-91	NM_000928	exon2	c.159_160insT	p.L53fs	GCCCCCCAAGCCA	.	129	19	98	0	.	0	0	0	0	0	A	120763700	-	A	120763699	7	5	56	1	0	1	1	0	0	0	0	0	12023	593	21	0	299	0	PLA2G1B	12	120763699	Frame_Shift_Ins	INS	-	TCGA-OR-A5LP-01A-11D-A29I-10	61495698	120763699	13088196	54	11429										
TMCO3	55002	bcgsc.ca	37	chr13	114152755	114152755	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0340909090909091	3	1	0.89079754601227	1.21472392638037	0.785997834716709	1	1	0	caaagtttatccatgcttgaCgagattcttgaagatgtaag	9	6	1	4	rs2260218	byfrequency	TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	.	TMCO3-90	NM_017905	exon3	c.C543T	p.D181D	GCTTGACGAGATT	.	99	8	129	0	C|0.795;T|0.205	37	37	0	0	0	T	114152755	C	T	114152755	2	4	56	1	0	0	0	0	0	0	0	1	16034	535	19	1		1	TMCO3	13	114152755	Silent	SNP	C	TCGA-OR-A5LP-01A-11D-A29I-10		114152755	1017123	55	11430										
ATP10A	57194	bcgsc.ca	37	chr15	25926186	25926186	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0340909090909091	3	1	0.89079754601227	1.21472392638037	0.785997834716709	1	1	0	aggctctggaaggcggcgtcGgccatgttaaaccagaacgt	14	10	1	1	rs2076743	byfrequency	TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	.	ATP10A-139	NM_024490	exon18	c.C3528T	p.A1176A	GGCGTCGGCCATG	.	216	7	242	4	G|0.329;A|0.671	3	3	0	0	0	A	25926186	G	A	25926186	2	1	56	1	0	0	0	0	0	0	0	1	1117	1103	39	1		1	ATP10A	15	25926186	Silent	SNP	G	TCGA-OR-A5LP-01A-11D-A29I-10		25926186	76605206	56	11431										
KBTBD13	390594	hgsc.bcm.edu	37	chr15	65369395	65369395	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0340909090909091	3	1	0.89079754601227	1.21472392638037	0.785997834716709	1	1	0	ggaggacgagctgctgcaggCcgtggagtgcgccgccttcc	17	13	0	0	rs2919358	byfrequency	TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	.	.	NM_001101362	exon1	c.C242T	p.A81V	TGCAGGCCGTGGA	.	7	7	1	0	C|0.452;T|0.548	0	0	0	0	0	T	65369395	C	T	65369395	3	4	56	1	0	0	0	0	1	0	0	0	8013	739	26	3	244	3	KBTBD13	15	65369395	Missense_Mutation	SNP	C	TCGA-OR-A5LP-01A-11D-A29I-10	39443209	65369395	37161997	57	11432										
SOLH	6650	hgsc.bcm.edu	37	chr16	597453	597453	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0340909090909091	3	1	0.89079754601227	1.21472392638037	0.785997834716709	1	1	0	gcgcctccacctggcctcccCggggaaggtgccgaggccaa	14	17	0	0	rs141612773	by1000genomes	TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	.	SOLH-523	NM_005632	exon4	c.C615T	p.P205P	CCTCCCCGGGGAA	.	11	9	0	0	C|0.999;T|0.001	10	3	7	0	0	T	597453	C	T	597453	2	4	56	1	0	0	0	0	0	0	0	1	14960	639	23	1		1	SOLH	16	597453	Silent	SNP	C	TCGA-OR-A5LP-01A-11D-A29I-10		597453	89757300	58	11433										
SPIRE2	84501	bcgsc.ca	37	chr16	89921057	89921057	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0340909090909091	3	1	0.89079754601227	1.21472392638037	0.785997834716709	1	1	0	actacaagctgcgcaaggtcAtggtgagcggggcagacgca	15	10	1	2	rs139065194		TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	.	SPIRE2-90	NM_032451	exon5	c.A889G	p.M297V	AAGGTCATGGTGA	.	202	19	129	0	A|1.000;G|0.000	0	0	0	0	0	G	89921057	A	G	89921057	3	3	56	1	0	0	0	0	1	0	0	0	15109	217	8	4	907	4	SPIRE2	16	89921057	Missense_Mutation	SNP	A	TCGA-OR-A5LP-01A-11D-A29I-10	89323604	89921057	433696	59	11434										
C17orf97	400566	hgsc.bcm.edu	37	chr17	260182	260182	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0340909090909091	3	1	0.89079754601227	1.21472392638037	0.785997834716709	1	1	0	tccgcgctgagagtcgccgaTtagtcggcatcgggcctcgg	15	13	0	1	rs7502594		TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	.	C17orf97-91	NM_001013672	exon1	c.T49C	p.L17L	CGCCGATTAGTCG	.	12	10	1	0	T|0.657;C|0.343	1	0	1	0	0	C	260182	T	C	260182	2	2	56	1	0	0	0	0	0	0	0	1	1898	1490	52	4		4	C17orf97	17	260182	Silent	SNP	T	TCGA-OR-A5LP-01A-11D-A29I-10		260182	80935028	60	11435										
SMG6	23293	ucsc.edu	37	chr17	2203570	2203570	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0340909090909091	3	1	0.89079754601227	1.21472392638037	0.785997834716709	1	1	0	tcctcctccacccgactggcGgattctttgctaacagtctg	8	15	2	0	rs150211793	byfrequency;alternate_allele	TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	.	SMG6-228	NM_017575	exon2	c.C477G	p.S159S	ACTGGCGGATTCT	.	29	4	42	0	G|1.000;A|0.000	12	12	0	0	0	C	2203570	G	C	2203570	2	2	56	1	0	0	0	0	0	0	0	1	14832	1103	39	2		2	SMG6	17	2203570	Silent	SNP	G	TCGA-OR-A5LP-01A-11D-A29I-10	1943388	2203570	78991640	61	11436										
KRTAP4-11	653240	broad.mit.edu	37	chr17	39274518	39274518	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0340909090909091	3	1	0.89079754601227	1.21472392638037	0.785997834716709	1	1	0	aggtctcctggcagaggtctCggccacagccttggtgagag	15	11	2	2	rs9897031		TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	.	.	NM_033059	exon1	c.G50A	p.R17Q	AGGTCTCGGCCAC	.	167	6	172	0	C|0.308;T|0.692	0	0	0	0	0	T	39274518	C	T	39274518	3	4	56	1	0	0	0	0	1	0	0	0	8571	884	31	1	541	1	KRTAP4-11	17	39274518	Missense_Mutation	SNP	C	TCGA-OR-A5LP-01A-11D-A29I-10	37070948	39274518	41920692	62	11437										
HSD17B1	3292	hgsc.bcm.edu	37	chr17	40706906	40706906	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0340909090909091	3	1	0.89079754601227	1.21472392638037	0.785997834716709	1	1	0	cagaggacgaggccgggcgcGgtgcggtgggggaccctgag	22	10	0	2	rs605059	byfrequency	TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	.	HSD17B1-90	NM_000413	exon6	c.G937A	p.G313S	GGGCGCGGTGCGG	.	8	6	0	0	G|0.505;A|0.495	0	0	0	0	0	A	40706906	G	A	40706906	3	1	56	1	0	0	0	0	1	0	0	0	7399	1116	39	1	959	1	HSD17B1	17	40706906	Missense_Mutation	SNP	G	TCGA-OR-A5LP-01A-11D-A29I-10	1432388	40706906	40488304	63	11438										
COG1	9382	bcgsc.ca	37	chr17	71197439	71197439	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0340909090909091	3	1	0.89079754601227	1.21472392638037	0.785997834716709	1	1	0	tccgatgcggcctgggtcagCgtggcaaaccggggtcagtt	16	11	2	0	rs1551036	byfrequency	TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	.	COG1-91	NM_018714	exon7	c.C1473T	p.S491S	GGTCAGCGTGGCA	.	104	6	137	1	C|0.867;N|0.001	18	18	0	0	0	T	71197439	C	T	71197439	2	4	56	1	0	0	0	0	0	0	0	1	3663	767	27	1		1	COG1	17	71197439	Silent	SNP	C	TCGA-OR-A5LP-01A-11D-A29I-10	30490533	71197439	9997771	64	11439										
CBLN2	147381	hgsc.bcm.edu	37	chr18	70209321	70209321	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0340909090909091	3	1	0.89079754601227	1.21472392638037	0.785997834716709	1	1	0	aggcaggatccgcagccgccCggctcgcgcagcgccccccg	14	20	0	0	rs7237888		TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	.	CBLN2-90	NM_182511	exon3	c.G75T	p.P25P	GCCGCCCGGCTCG	.	5	5	0	0	C|0.390;A|0.610	0	0	0	0	0	A	70209321	C	A	70209321	2	1	56	1	0	0	0	0	0	0	0	1	2711	639	23	2		2	CBLN2	18	70209321	Silent	SNP	C	TCGA-OR-A5LP-01A-11D-A29I-10		70209321	7867927	65	11440										
ODF3L2	284451	hgsc.bcm.edu	37	chr19	464080	464080	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0340909090909091	3	1	0.89079754601227	1.21472392638037	0.785997834716709	1	1	0	gcgctggcggtaggtgtttgCgtccgggctgtcgtactggc	18	10	0	0	rs76592524		TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	.	ODF3L2-68	NM_182577	exon4	c.G634A	p.A212T	TGTTTGCGTCCGG	.	13	7	1	0	C|0.969;T|0.031	4	1	3	0	0	T	464080	C	T	464080	3	4	56	1	0	0	0	0	1	0	0	0	10861	768	27	1	239	1	ODF3L2	19	464080	Missense_Mutation	SNP	C	TCGA-OR-A5LP-01A-11D-A29I-10		464080	58664903	66	11441										
POLRMT	5442	hgsc.bcm.edu	37	chr19	621561	621561	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0340909090909091	3	1	0.89079754601227	1.21472392638037	0.785997834716709	1	1	0	ctgcagcaccaggtccagcaCgcgcccgttgacgcgccagg	13	17	0	1	rs10421235		TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	.	POLRMT-92	NM_005035	exon10	c.G2137T	p.V713L	CCAGCACGCGCCC	.	20	15	0	0	C|0.918;A|0.082	21	10	11	0	0	A	621561	C	A	621561	3	1	56	1	0	0	0	0	1	0	0	0	12267	536	19	2	1603	2	POLRMT	19	621561	Missense_Mutation	SNP	C	TCGA-OR-A5LP-01A-11D-A29I-10	157481	621561	58507422	67	11442										
ABCA7	10347	hgsc.bcm.edu	37	chr19	1065044	1065044	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0340909090909091	3	1	0.89079754601227	1.21472392638037	0.785997834716709	1	1	0	ctgcgcgaggcacatggaggCcgcctgcgcttccagctgcc	14	16	0	0	rs4147935	byfrequency	TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	.	ABCA7-98	NM_019112	exon46	c.C6159T	p.G2053G	TGGAGGCCGCCTG	.	6	5	1	0	C|0.766;T|0.234	3	1	2	0	0	T	1065044	C	T	1065044	2	4	56	1	0	0	0	0	0	0	0	1	37	726	26	3		3	ABCA7	19	1065044	Silent	SNP	C	TCGA-OR-A5LP-01A-11D-A29I-10	443483	1065044	58063939	68	11443										
ARRDC2	27106	hgsc.bcm.edu	37	chr19	18112361	18112361	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0340909090909091	3	1	0.89079754601227	1.21472392638037	0.785997834716709	1	1	0	ccgcggagacctacctgcggCgtcggcagctgctgctccga	14	16	0	1	rs113540008		TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	.	ARRDC2-91	NM_001025604	exon1	c.C238T	p.R80C	CTGCGGCGTCGGC	.	13	13	0	0	C|0.966;T|0.034	5	0	5	0	0	T	18112361	C	T	18112361	3	4	56	1	0	0	0	0	1	0	0	0	984	768	27	1	240	1	ARRDC2	19	18112361	Missense_Mutation	SNP	C	TCGA-OR-A5LP-01A-11D-A29I-10	17047317	18112361	41016622	69	11444										
GPATCH1	55094	bcgsc.ca	37	chr19	33579128	33579128	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0340909090909091	3	1	0.89079754601227	1.21472392638037	0.785997834716709	1	1	0	cgattccacggggcctttagTggaggtttctctgctggata	13	9	1	0	rs7259333	byfrequency	TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	.	GPATCH1-91	NM_018025	exon2	c.T162C	p.S54S	CTTTAGTGGAGGT	.	112	6	58	0	T|0.549;C|0.451	4	4	0	0	0	C	33579128	T	C	33579128	2	2	56	1	0	0	0	0	0	0	0	1	6610	1693	59	4		4	GPATCH1	19	33579128	Silent	SNP	T	TCGA-OR-A5LP-01A-11D-A29I-10	15466767	33579128	25549855	70	11445										
FBXO17	115290	hgsc.bcm.edu	37	chr19	39440918	39440918	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0340909090909091	3	1	0.89079754601227	1.21472392638037	0.785997834716709	1	1	0	agcgcgtccagggccagggaTgggtccgccggcagccgtcg	18	14	0	0	rs2304117	byfrequency	TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	.	FBXO17-226	NM_148169	exon2	c.A69G	p.P23P	CAGGGATGGGTCC	.	10	10	0	0	T|0.545;C|0.455	0	0	0	0	0	C	39440918	T	C	39440918	2	2	56	1	0	0	0	0	0	0	0	1	5749	1451	51	4		4	FBXO17	19	39440918	Silent	SNP	T	TCGA-OR-A5LP-01A-11D-A29I-10	5861790	39440918	19688065	71	11446										
IRGC	56269	broad.mit.edu;bcgsc.ca	37	chr19	44223431	44223431	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0340909090909091	3	1	0.89079754601227	1.21472392638037	0.785997834716709	1	1	0	acgacctgccctcccaccggCgccacgctggcctgctgtcg	11	20	0	0	novel		TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	.	IRGC-70	NM_019612	exon2	c.C721T	p.R241C	CACCGGCGCCACG	.	181	9	63	0	.	0	0	0	0	0	T	44223431	C	T	44223431	3	4	56	1	0	0	0	0	1	0	0	0	7859	768	27	1	723	1	IRGC	19	44223431	Missense_Mutation	SNP	C	TCGA-OR-A5LP-01A-11D-A29I-10	4782513	44223431	14905552	72	11447										
SIX5	147912	broad.mit.edu;bcgsc.ca	37	chr19	46269609	46269609	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0340909090909091	3	1	0.89079754601227	1.21472392638037	0.785997834716709	1	1	0	gggagggagatgggggtaccTggggcagtggccgaaggcag	23	6	0	1	novel		TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	.	SIX5-91	NM_175875	exon2	c.A1608T	p.P536P	GGTACCTGGGGCA	.	81	5	43	0	.	2	2	0	0	0	A	46269609	T	A	46269609	2	1	56	1	0	0	0	0	0	0	0	1	14385	1594	55	5		5	SIX5	19	46269609	Silent	SNP	T	TCGA-OR-A5LP-01A-11D-A29I-10	2046178	46269609	12859374	73	11448										
PTGIR	5739	hgsc.bcm.edu	37	chr19	47127324	47127324	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0340909090909091	3	1	0.89079754601227	1.21472392638037	0.785997834716709	1	1	0	tcggtggccgccagtccggtCaccagcaccgcgaaggccga	14	16	1	0	rs2229128	byfrequency	TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	.	PTGIR-522	NM_000960	exon2	c.G159C	p.V53V	TCCGGTCACCAGC	.	8	6	0	0	C|0.254;G|0.746	3	3	0	0	0	G	47127324	C	G	47127324	2	3	56	1	0	0	0	0	0	0	0	1	12784	813	29	3		3	PTGIR	19	47127324	Silent	SNP	C	TCGA-OR-A5LP-01A-11D-A29I-10	857715	47127324	12001659	74	11449										
PPFIA3	8541	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr19	49645325	49645325	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0340909090909091	3	1	0.89079754601227	1.21472392638037	0.785997834716709	1	1	0	aggaggcctgccgccagggcCtaccttttgctgcctgggac	14	14	0	0	novel		TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	.	PPFIA3-226	NM_003660	exon20	c.C2497G	p.L833V	CAGGGCCTACCTT	.	97	6	74	0	.	5	5	0	0	0	G	49645325	C	G	49645325	3	3	56	1	0	0	0	0	1	0	0	0	12340	680	24	3	2571	3	PPFIA3	19	49645325	Missense_Mutation	SNP	C	TCGA-OR-A5LP-01A-11D-A29I-10	2518001	49645325	9483658	75	11450										
PNKP	11284	broad.mit.edu	37	chr19	50370408	50370408	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0340909090909091	3	1	0.89079754601227	1.21472392638037	0.785997834716709	1	1	0	ggcaggaagatggggggcgcTcccccaggggggctctcgag	20	11	1	1	novel		TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	.	PNKP-253	NM_007254	exon2	c.A54G	p.G18G	GGGCGCTCCCCCA	.	98	25	34	1	.	42	39	3	0	0	C	50370408	T	C	50370408	2	2	56	1	0	0	0	0	0	0	0	1	12176	1538	54	4		4	PNKP	19	50370408	Silent	SNP	T	TCGA-OR-A5LP-01A-11D-A29I-10	725083	50370408	8758575	76	11451										
LILRA3	11026	bcgsc.ca	37	chr19	54804167	54804167	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0340909090909091	3	1	0.89079754601227	1.21472392638037	0.785997834716709	1	1	0	gatcaggaccgtgaggatggGggtcatggcgtctcctccca	15	11	3	1	rs11574606	byfrequency	TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	.	LILRA3-91	NM_001172654	exon1	c.C7T	p.P3S	GGATGGGGGTCAT	.	177	6	123	0	G|0.907;A|0.093	1	1	0	0	0	A	54804167	G	A	54804167	3	1	56	1	0	0	0	0	1	0	0	0	8809	1232	43	3	1340	3	LILRA3	19	54804167	Missense_Mutation	SNP	G	TCGA-OR-A5LP-01A-11D-A29I-10	4433759	54804167	4324816	77	11452										
ZNF471	57573	broad.mit.edu	37	chr19	57036436	57036436	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0340909090909091	3	1	0.89079754601227	1.21472392638037	0.785997834716709	1	1	0	tcagtgatggctcgtcttttGctcgacatcagagatgtcac	10	10	4	2	rs75422502		TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	.	ZNF471-154	NM_020813	exon5	c.G1000T	p.A334S	TCTTTTGCTCGAC	.	94	20	79	10	.	4	2	2	0	0	T	57036436	G	T	57036436	3	4	56	1	0	0	0	0	1	0	0	0	17967	1319	46	3	1014	3	ZNF471	19	57036436	Missense_Mutation	SNP	G	TCGA-OR-A5LP-01A-11D-A29I-10	2232269	57036436	2092547	78	11453										
TCF15	6939	hgsc.bcm.edu	37	chr20	590456	590456	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0340909090909091	3	1	0.89079754601227	1.21472392638037	0.785997834716709	1	1	0	cccttggcactgcccgcggcAcggaagcacggctgcccgtc	13	18	0	0	rs282164	byfrequency	TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	.	TCF15-90	NM_004609	exon1	c.T426C	p.R142R	CGCGGCACGGAAG	.	8	8	0	0	A|0.165;G|0.835	0	0	0	0	0	G	590456	A	G	590456	2	3	56	1	0	0	0	0	0	0	0	1	15725	146	6	4		4	TCF15	20	590456	Silent	SNP	A	TCGA-OR-A5LP-01A-11D-A29I-10		590456	62435064	79	11454										
OTOR	56914	hgsc.bcm.edu	37	chr20	16729548	16729548	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0340909090909091	3	1	0.89079754601227	1.21472392638037	0.785997834716709	1	1	0	tagtgctcaagaagattataAtgccccggactgtagattca	9	8	2	3	novel		TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	.	OTOR-206	NM_020157	exon2	c.A152G	p.N51S	ATTATAATGCCCC	.	48	4	37	0	.	0	0	0	0	0	G	16729548	A	G	16729548	3	3	56	1	0	0	0	0	1	0	0	0	11337	101	4	4	158	4	OTOR	20	16729548	Missense_Mutation	SNP	A	TCGA-OR-A5LP-01A-11D-A29I-10	16139092	16729548	46295972	80	11455										
CST3	1471	hgsc.bcm.edu	37	chr20	23618488	23618488	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0340909090909091	3	1	0.89079754601227	1.21472392638037	0.785997834716709	1	1	0	aggagcagcggggcgcgcagGggcccggccatggtcggcta	20	12	0	0	rs1055084		TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	.	CST3-91	NM_000099	exon1	c.C12T	p.P4P	GCGCAGGGGCCCG	.	5	5	0	0	T|0.037;C|0.962	644	294	350	0	0	A	23618488	G	A	23618488	2	1	56	1	0	0	0	0	0	0	0	1	3979	1219	43	3		3	CST3	20	23618488	Silent	SNP	G	TCGA-OR-A5LP-01A-11D-A29I-10	6888940	23618488	39407032	81	11456										
MANBAL	63905	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr20	35944722	35944722	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0340909090909091	3	1	0.89079754601227	1.21472392638037	0.785997834716709	1	1	0	acctcacaggaggctgaaccGtctgagcccagaagtgctga	12	12	2	4	novel		TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	.	MANBAL-90	NM_001003897	exon3	c.G162A	p.P54P	TGAACCGTCTGAG	.	335	107	265	1	.	0	0	0	0	0	A	35944722	G	A	35944722	2	1	56	1	0	0	0	0	0	0	0	1	9248	1132	40	1		1	MANBAL	20	35944722	Silent	SNP	G	TCGA-OR-A5LP-01A-11D-A29I-10	12326234	35944722	27080798	82	11457										
NRIP1	8204	broad.mit.edu	37	chr21	16337507	16337507	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0340909090909091	3	1	0.89079754601227	1.21472392638037	0.785997834716709	1	1	0	aggagtttttactacacctgGgtatgaaaatgtcctgttat	9	6	0	1	novel		TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	.	NRIP1-186	NM_003489	exon4	c.C3007A	p.P1003T	CACCTGGGTATGA	.	34	3	48	0	.	12	12	0	0	0	T	16337507	G	T	16337507	3	4	56	1	0	0	0	0	1	0	0	0	10681	1232	43	3	473	3	NRIP1	21	16337507	Missense_Mutation	SNP	G	TCGA-OR-A5LP-01A-11D-A29I-10		16337507	31792388	83	11458										
PLAC4	191585	bcgsc.ca	37	chr21	42551432	42551432	+	Nonsense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0340909090909091	3	1	0.89079754601227	1.21472392638037	0.785997834716709	1	1	0	gggtgaggagtgacggtgtcTggggtgagtgagggtgtcca	22	4	1	4	rs5019194		TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	.	.	NM_182832	exon1	c.A124T	p.R42X	GGTGTCTGGGGTG	.	128	9	119	2	.	0	0	0	0	0	A	42551432	T	A	42551432	4	1	56	1	0	0	0	0	0	1	0	0	12043	1588	55	5	332	5	PLAC4	21	42551432	Nonsense_Mutation	SNP	T	TCGA-OR-A5LP-01A-11D-A29I-10	26213925	42551432	5578463	84	11459										
KRTAP10-6	386674	ucsc.edu	37	chr21	46011987	46011987	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0340909090909091	3	1	0.89079754601227	1.21472392638037	0.785997834716709	1	1	0	agaatccccacagcagacggAcacacagcacacaggcttgc	9	15	0	2	rs201334923		TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	.	KRTAP10-6-90	NM_198688	exon1	c.T379C	p.S127P	AGACGGACACACA	.	120	62	163	27	.	0	0	0	0	0	G	46011987	A	G	46011987	3	3	56	1	0	0	0	0	1	0	0	0	8534	275	10	4	722	4	KRTAP10-6	21	46011987	Missense_Mutation	SNP	A	TCGA-OR-A5LP-01A-11D-A29I-10	3460555	46011987	2117908	85	11460										
SCARF2	91179	hgsc.bcm.edu	37	chr22	20779768	20779768	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0340909090909091	3	1	0.89079754601227	1.21472392638037	0.785997834716709	1	1	0	tcttccggggggtctcaggcGcgggcaagtcggtcgccgcc	17	14	2	0	rs874101	byfrequency	TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	.	SCARF2-341	NM_153334	exon11	c.C2510G	p.A837G	TCAGGCGCGGGCA	.	5	5	0	0	G|0.531;C|0.469	0	0	0	0	0	C	20779768	G	C	20779768	3	2	56	1	0	0	0	0	1	0	0	0	13919	1087	38	2	106	2	SCARF2	22	20779768	Missense_Mutation	SNP	G	TCGA-OR-A5LP-01A-11D-A29I-10		20779768	30524798	86	11461										
RAB36	9609	bcgsc.ca	37	chr22	23503121	23503121	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0340909090909091	3	1	0.89079754601227	1.21472392638037	0.785997834716709	1	1	0	gccctggcattcgagcagtcGgtgctgcaggacctggagag	16	11	0	1	rs5759611	byfrequency	TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	.	RAB36-228	NM_004914	exon10	c.G873A	p.S291S	GCAGTCGGTGCTG	.	212	8	250	2	G|0.776;A|0.224	2	2	0	0	0	A	23503121	G	A	23503121	2	1	56	1	0	0	0	0	0	0	0	1	12961	1103	39	1		1	RAB36	22	23503121	Silent	SNP	G	TCGA-OR-A5LP-01A-11D-A29I-10	2723353	23503121	27801445	87	11462										
RBBP7	5931	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	16871808	16871808	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0340909090909091	3	1	0.89079754601227	1.21472392638037	0.785997834716709	1	1	0	tgaattttccaccttacatcAtaagtttctgatcatcagca	4	10	4	2	novel		TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	.	RBBP7-227	NM_001198719	exon6	c.T887C	p.M296T	TACATCATAAGTT	.	117	39	87	0	.	5	0	5	0	0	G	16871808	A	G	16871808	3	3	56	1	0	0	0	0	1	0	0	0	13139	217	8	4	550	4	RBBP7	23	16871808	Missense_Mutation	SNP	A	TCGA-OR-A5LP-01A-11D-A29I-10		16871808	138398752	88	11463										
KIAA1210	57481	broad.mit.edu	37	chrX	118222406	118222406	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0340909090909091	3	1	0.89079754601227	1.21472392638037	0.785997834716709	1	1	0	atagaagtgcccactgaactGgtggggacttgttgctgaac	13	8	0	3	novel		TCGA-OR-A5LP-01A-11D-A29I-10	TCGA-OR-A5LP-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b99240a5-4738-428d-ac47-18daf7a1aae2	d7bbc3ad-5693-4e16-913b-7c102e0882fc	.	KIAA1210-67	NM_020721	exon11	c.C2787A	p.T929T	TGAACTGGTGGGG	.	130	5	122	0	.	0	0	0	0	0	T	118222406	G	T	118222406	2	4	56	1	0	0	0	0	0	0	0	1	8235	1335	47	3		3	KIAA1210	23	118222406	Silent	SNP	G	TCGA-OR-A5LP-01A-11D-A29I-10	101350598	118222406	37048154	89	11464										
OPRD1	4985	hgsc.bcm.edu	37	chr1	29138975	29138975	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0508474576271186	3	0.929330005145667	1.40575396825397	5.62301587301587	1.02236652236652	1	1	0	ggacgcctaccctagcgcctGccccagcgctggcgccaatg	12	18	0	0	rs1042114	byfrequency	TCGA-OR-A5LR-01A-11D-A29I-10	TCGA-OR-A5LR-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a4944d75-a6da-45bb-b5b9-3fa3355b0ead	c2a8460f-138e-44eb-a933-a5cd6ca34d8b	.	OPRD1-69	NM_000911	exon1	c.G80T	p.C27F	GCGCCTGCCCCAG	.	8	8	0	0	G|0.061;T|0.939	0	0	0	0	0	T	29138975	G	T	29138975	3	4	57	1	0	0	0	0	1	0	0	0	10913	1319	46	3	82	3	OPRD1	1	29138975	Missense_Mutation	SNP	G	TCGA-OR-A5LR-01A-11D-A29I-10		29138975	220111646	1	11465										
HRNR	388697	bcgsc.ca	37	chr1	152192555	152192555	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0508474576271186	3	0.929330005145667	1.40575396825397	5.62301587301587	1.02236652236652	1	1	0	agccagacccatgctgaccaTagctggaagatgaacctgca	10	12	0	4	rs41266134	byfrequency	TCGA-OR-A5LR-01A-11D-A29I-10	TCGA-OR-A5LR-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a4944d75-a6da-45bb-b5b9-3fa3355b0ead	c2a8460f-138e-44eb-a933-a5cd6ca34d8b	.	HRNR-93	NM_001009931	exon3	c.A1550G	p.Y517C	TGACCATAGCTGG	.	281	12	359	3	T|0.836;C|0.164	0	0	0	0	0	C	152192555	T	C	152192555	3	2	57	1	0	0	0	0	1	0	0	0	7380	1406	49	4	7006	4	HRNR	1	152192555	Missense_Mutation	SNP	T	TCGA-OR-A5LR-01A-11D-A29I-10	123053580	152192555	97058066	2	11466										
ADAMTS4	9507	bcgsc.ca	37	chr1	161160928	161160928	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0508474576271186	3	0.929330005145667	1.40575396825397	5.62301587301587	1.02236652236652	1	1	0	gggcagccgggatagtgaggTtatttcctgcccgcccaggg	16	11	0	1	novel		TCGA-OR-A5LR-01A-11D-A29I-10	TCGA-OR-A5LR-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a4944d75-a6da-45bb-b5b9-3fa3355b0ead	c2a8460f-138e-44eb-a933-a5cd6ca34d8b	.	ADAMTS4-230	NM_005099	exon9	c.A2514G	p.X838X	GTGAGGTTATTTC	.	43	4	32	0	.	0	0	0	0	0	C	161160928	T	C	161160928	2	2	57	1	0	0	0	0	0	0	0	1	268	1732	60	4		4	ADAMTS4	1	161160928	Silent	SNP	T	TCGA-OR-A5LR-01A-11D-A29I-10	8968373	161160928	88089693	3	11467										
LAMC1	3915	bcgsc.ca	37	chr1	183072590	183072590	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0508474576271186	3	0.929330005145667	1.40575396825397	5.62301587301587	1.02236652236652	1	1	0	cagtactacagtggttcctgTgagaacacctactccaaggc	9	12	0	1	rs2296288	byfrequency	TCGA-OR-A5LR-01A-11D-A29I-10	TCGA-OR-A5LR-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a4944d75-a6da-45bb-b5b9-3fa3355b0ead	c2a8460f-138e-44eb-a933-a5cd6ca34d8b	.	LAMC1-252	NM_002293	exon2	c.T546C	p.C182C	TTCCTGTGAGAAC	.	267	9	355	3	T|0.486;C|0.514	7	7	0	0	0	C	183072590	T	C	183072590	2	2	57	1	0	0	0	0	0	0	0	1	8636	1702	59	4		4	LAMC1	1	183072590	Silent	SNP	T	TCGA-OR-A5LR-01A-11D-A29I-10	21911662	183072590	66178031	4	11468										
OR2L3	391192	ucsc.edu	37	chr1	248224578	248224578	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0508474576271186	3	0.929330005145667	1.40575396825397	5.62301587301587	1.02236652236652	1	1	0	gggtctatgagggcacagtgTttttgagcaccaccatcttt	11	9	2	2	rs60743763	byfrequency	TCGA-OR-A5LR-01A-11D-A29I-10	TCGA-OR-A5LR-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a4944d75-a6da-45bb-b5b9-3fa3355b0ead	c2a8460f-138e-44eb-a933-a5cd6ca34d8b	.	OR2L3-68	NM_001004687	exon1	c.T595C	p.F199L	ACAGTGTTTTTGA	.	107	23	235	9	T|0.975;C|0.025	0	0	0	0	0	C	248224578	T	C	248224578	3	2	57	1	0	0	0	0	1	0	0	0	11037	1725	60	4	597	4	OR2L3	1	248224578	Missense_Mutation	SNP	T	TCGA-OR-A5LR-01A-11D-A29I-10	65151988	248224578	1026043	5	11469										
RBM6	10180	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	50005492	50005492	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0508474576271186	3	0.929330005145667	1.40575396825397	5.62301587301587	1.02236652236652	1	1	0	ttagggccagagaacagtccCgttctgattttaggaataga	11	7	1	3	novel		TCGA-OR-A5LR-01A-11D-A29I-10	TCGA-OR-A5LR-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a4944d75-a6da-45bb-b5b9-3fa3355b0ead	c2a8460f-138e-44eb-a933-a5cd6ca34d8b	.	RBM6-280	NM_005777	exon3	c.C634T	p.R212C	CAGTCCCGTTCTG	.	77	17	123	0	.	9	5	4	0	0	T	50005492	C	T	50005492	3	4	57	1	0	0	0	0	1	0	0	0	13179	652	23	1	640	1	RBM6	3	50005492	Missense_Mutation	SNP	C	TCGA-OR-A5LR-01A-11D-A29I-10		50005492	148016938	6	11470										
HLTF	6596	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	148763873	148763873	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0508474576271186	3	0.929330005145667	1.40575396825397	5.62301587301587	1.02236652236652	1	1	0	ttctttctccataccttccaAtagtggctctgccttcattt	4	13	4	0	novel		TCGA-OR-A5LR-01A-11D-A29I-10	TCGA-OR-A5LR-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a4944d75-a6da-45bb-b5b9-3fa3355b0ead	c2a8460f-138e-44eb-a933-a5cd6ca34d8b	.	HLTF-659	NM_139048	exon18	c.T2066C	p.I689T	CTTCCAATAGTGG	.	92	65	122	0	.	0	0	0	0	0	G	148763873	A	G	148763873	3	3	57	1	0	0	0	0	1	0	0	0	7236	101	4	4	995	4	HLTF	3	148763873	Missense_Mutation	SNP	A	TCGA-OR-A5LR-01A-11D-A29I-10	98758381	148763873	49258557	7	11471										
EIF2B5	8893	broad.mit.edu;bcgsc.ca	37	chr3	183853220	183853220	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0508474576271186	3	0.929330005145667	1.40575396825397	5.62301587301587	1.02236652236652	1	1	0	tggtgtggtggttagtcgggCtaacaagcgcagcggcgcgg	19	8	0	0	rs113994041	alternate_allele	TCGA-OR-A5LR-01A-11D-A29I-10	TCGA-OR-A5LR-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a4944d75-a6da-45bb-b5b9-3fa3355b0ead	c2a8460f-138e-44eb-a933-a5cd6ca34d8b	.	EIF2B5-95	NM_003907	exon1	c.C47T	p.A16V	GTCGGGCTAACAA	.	95	5	50	0	.	9	7	2	0	0	T	183853220	C	T	183853220	3	4	57	1	0	0	0	0	1	0	0	0	5015	797	28	3	49	3	EIF2B5	3	183853220	Missense_Mutation	SNP	C	TCGA-OR-A5LR-01A-11D-A29I-10	35089347	183853220	14169210	8	11472										
MUC4	4585	bcgsc.ca	37	chr3	195507226	195507226	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0508474576271186	3	0.929330005145667	1.40575396825397	5.62301587301587	1.02236652236652	1	1	0	tggtgacaggaagaggggtgAcgtgacctgtggatgctgag	19	5	0	5	rs201269328		TCGA-OR-A5LR-01A-11D-A29I-10	TCGA-OR-A5LR-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a4944d75-a6da-45bb-b5b9-3fa3355b0ead	c2a8460f-138e-44eb-a933-a5cd6ca34d8b	.	MUC4-90	NM_018406	exon2	c.T11225C	p.V3742A	GGGGTGACGTGAC	.	240	19	286	7	A|0.001;G|0.999	0	0	0	0	0	G	195507226	A	G	195507226	3	3	57	1	0	0	0	0	1	0	0	0	10006	275	10	4		4	MUC4	3	195507226	Missense_Mutation	SNP	A	TCGA-OR-A5LR-01A-11D-A29I-10	11654006	195507226	2515204	9	11473										
CRIPAK	285464	ucsc.edu;bcgsc.ca	37	chr4	1388324	1388324	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0508474576271186	3	0.929330005145667	1.40575396825397	5.62301587301587	1.02236652236652	1	1	0	atgagccctcgctttgtgccAatgtggagtgcccgcctgct	12	13	0	1	rs74377230	byfrequency	TCGA-OR-A5LR-01A-11D-A29I-10	TCGA-OR-A5LR-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a4944d75-a6da-45bb-b5b9-3fa3355b0ead	c2a8460f-138e-44eb-a933-a5cd6ca34d8b	.	CRIPAK-90	NM_175918	exon1	c.A25C	p.N9H	TGTGCCAATGTGG	.	136	23	134	3	A|0.939;C|0.061	1	1	0	0	0	C	1388324	A	C	1388324	3	2	57	1	0	0	0	0	1	0	0	0	3883	130	5	5	27	5	CRIPAK	4	1388324	Missense_Mutation	SNP	A	TCGA-OR-A5LR-01A-11D-A29I-10		1388324	189765952	10	11474										
HGFAC	3083	bcgsc.ca	37	chr4	3449886	3449886	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0508474576271186	3	0.929330005145667	1.40575396825397	5.62301587301587	1.02236652236652	1	1	0	tactccagctccctgcgggaGgccctggtccccctggtcgc	12	18	0	0	rs28468427	byfrequency	TCGA-OR-A5LR-01A-11D-A29I-10	TCGA-OR-A5LR-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a4944d75-a6da-45bb-b5b9-3fa3355b0ead	c2a8460f-138e-44eb-a933-a5cd6ca34d8b	.	HGFAC-514	NM_001528	exon13	c.G1668A	p.E556E	GCGGGAGGCCCTG	.	167	7	49	0	G|0.745;A|0.255	0	0	0	0	0	A	3449886	G	A	3449886	2	1	57	1	0	0	0	0	0	0	0	1	7107	991	35	3		3	HGFAC	4	3449886	Silent	SNP	G	TCGA-OR-A5LR-01A-11D-A29I-10	2061562	3449886	187704390	11	11475										
DSPP	1834	bcgsc.ca	37	chr4	88537294	88537294	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0508474576271186	3	0.929330005145667	1.40575396825397	5.62301587301587	1.02236652236652	1	1	0	agtgacagcagcgacagcagTgacagcagcgatagcagcga	14	10	0	2	novel		TCGA-OR-A5LR-01A-11D-A29I-10	TCGA-OR-A5LR-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a4944d75-a6da-45bb-b5b9-3fa3355b0ead	c2a8460f-138e-44eb-a933-a5cd6ca34d8b	.	DSPP-90	NM_014208	exon5	c.T3480C	p.S1160S	CAGCAGTGACAGC	.	519	120	994	8	.	0	0	0	0	0	C	88537294	T	C	88537294	2	2	57	1	0	0	0	0	0	0	0	1	4793	1693	59	4		4	DSPP	4	88537294	Silent	SNP	T	TCGA-OR-A5LR-01A-11D-A29I-10	85087408	88537294	102616982	12	11476										
C4orf33	132321	bcgsc.ca	37	chr4	130032886	130032886	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0508474576271186	3	0.929330005145667	1.40575396825397	5.62301587301587	1.02236652236652	1	1	0	ttcaattttaacacactgctTggagaagagtggaaacaacc	8	8	1	2	novel		TCGA-OR-A5LR-01A-11D-A29I-10	TCGA-OR-A5LR-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a4944d75-a6da-45bb-b5b9-3fa3355b0ead	c2a8460f-138e-44eb-a933-a5cd6ca34d8b	.	C4orf33-69	NM_001099783	exon6	c.T540A	p.L180L	ACTGCTTGGAGAA	.	154	6	161	0	.	15	15	0	0	0	A	130032886	T	A	130032886	2	1	57	1	0	0	0	0	0	0	0	1	2269	1799	63	5		5	C4orf33	4	130032886	Silent	SNP	T	TCGA-OR-A5LR-01A-11D-A29I-10	41495592	130032886	61121390	13	11477										
EDNRA	1909	bcgsc.ca	37	chr4	148461037	148461037	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0508474576271186	3	0.929330005145667	1.40575396825397	5.62301587301587	1.02236652236652	1	1	0	ctttgctggttccctcttcaTttaagccgtatattgaagaa	7	9	2	2	rs5333	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-OR-A5LR-01A-11D-A29I-10	TCGA-OR-A5LR-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a4944d75-a6da-45bb-b5b9-3fa3355b0ead	c2a8460f-138e-44eb-a933-a5cd6ca34d8b	.	EDNRA-586	NM_001957	exon6	c.T969C	p.H323H	TCTTCATTTAAGC	.	78	5	82	0	T|0.642;C|0.358	1	1	0	0	0	C	148461037	T	C	148461037	2	2	57	1	0	0	0	0	0	0	0	1	4930	1490	52	4		4	EDNRA	4	148461037	Silent	SNP	T	TCGA-OR-A5LR-01A-11D-A29I-10	18428151	148461037	42693239	14	11478			1	55		2	2	37	N	T_G	6.860951e-05
EDNRA	1909	ucsc.edu;bcgsc.ca	37	chr4	148461073	148461073	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0508474576271186	3	0.929330005145667	1.40575396825397	5.62301587301587	1.02236652236652	1	1	0	aagaaaactgtgtataacgaGatggacaagaaccgatgtga	11	5	0	4	rs5334	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-OR-A5LR-01A-11D-A29I-10	TCGA-OR-A5LR-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a4944d75-a6da-45bb-b5b9-3fa3355b0ead	c2a8460f-138e-44eb-a933-a5cd6ca34d8b	.	EDNRA-586	NM_001957	exon6	c.G1005A	p.E335E	TAACGAGATGGAC	.	61	6	55	0	G|0.644;A|0.356	1	1	0	0	0	A	148461073	G	A	148461073	2	1	57	1	0	0	0	0	0	0	0	1	4930	933	33	3		3	EDNRA	4	148461073	Silent	SNP	G	TCGA-OR-A5LR-01A-11D-A29I-10	36	148461073	42693203	15	11479			1	55		2	2	37	N	T_G	6.860951e-05
MRPS30	10884	broad.mit.edu	37	chr5	44809179	44809179	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0508474576271186	3	0.929330005145667	1.40575396825397	5.62301587301587	1.02236652236652	1	1	0	cctgccaagacgtcgcggcgAcccccgtcgcgcggtacccg	13	19	0	1	novel		TCGA-OR-A5LR-01A-11D-A29I-10	TCGA-OR-A5LR-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a4944d75-a6da-45bb-b5b9-3fa3355b0ead	c2a8460f-138e-44eb-a933-a5cd6ca34d8b	.	MRPS30-227	NM_016640	exon1	c.A115C	p.T39P	GCGGCGACCCCCG	.	175	42	23	2	.	9	8	1	0	0	C	44809179	A	C	44809179	3	2	57	1	0	0	0	0	1	0	0	0	9868	275	10	5	117	5	MRPS30	5	44809179	Missense_Mutation	SNP	A	TCGA-OR-A5LR-01A-11D-A29I-10		44809179	136106081	16	11480										
HIST1H3D	8351	broad.mit.edu;bcgsc.ca	37	chr6	26197478	26197478	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0508474576271186	3	0.929330005145667	1.40575396825397	5.62301587301587	1.02236652236652	1	1	0	agtctgcttggtacgagccaTtgcgaacttctaaaccctgc	9	12	2	0	novel		TCGA-OR-A5LR-01A-11D-A29I-10	TCGA-OR-A5LR-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a4944d75-a6da-45bb-b5b9-3fa3355b0ead	c2a8460f-138e-44eb-a933-a5cd6ca34d8b	.	HIST1H3D-90	NM_003530	exon2	c.A1G	p.M1V	GAGCCATTGCGAA	.	274	13	301	0	.	1	1	0	0	0	C	26197478	T	C	26197478	3	2	57	1	0	0	0	0	1	0	0	0	7179	1493	52	4	413	4	HIST1H3D	6	26197478	Missense_Mutation	SNP	T	TCGA-OR-A5LR-01A-11D-A29I-10		26197478	144917589	17	11481										
PNPLA1	285848	ucsc.edu;bcgsc.ca	37	chr6	36260858	36260858	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0508474576271186	3	0.929330005145667	1.40575396825397	5.62301587301587	1.02236652236652	1	1	0	gccctatactgcagctgcttCgtcccggtgtactgtggcct	11	14	0	0	rs2239795	byfrequency	TCGA-OR-A5LR-01A-11D-A29I-10	TCGA-OR-A5LR-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a4944d75-a6da-45bb-b5b9-3fa3355b0ead	c2a8460f-138e-44eb-a933-a5cd6ca34d8b	.	PNPLA1-137	NM_001145717	exon3	c.C459T	p.F153F	CTGCTTCGTCCCG	.	64	6	101	1	C|0.568;T|0.432	0	0	0	0	0	T	36260858	C	T	36260858	2	4	57	1	0	0	0	0	0	0	0	1	12193	883	31	1		1	PNPLA1	6	36260858	Silent	SNP	C	TCGA-OR-A5LR-01A-11D-A29I-10	10063380	36260858	134854209	18	11482										
SH3BGRL2	83699	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	80406276	80406276	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0508474576271186	3	0.929330005145667	1.40575396825397	5.62301587301587	1.02236652236652	1	1	0	ggcctgaaaccacggttggcAtcaaaggtaggtaaatcttt	11	8	2	1	novel		TCGA-OR-A5LR-01A-11D-A29I-10	TCGA-OR-A5LR-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a4944d75-a6da-45bb-b5b9-3fa3355b0ead	c2a8460f-138e-44eb-a933-a5cd6ca34d8b	.	SH3BGRL2-226	NM_031469	exon3	c.A306G	p.A102A	GTTGGCATCAAAG	.	55	14	61	0	.	0	0	0	0	0	G	80406276	A	G	80406276	2	3	57	1	0	0	0	0	0	0	0	1	14277	204	8	4		4	SH3BGRL2	6	80406276	Silent	SNP	A	TCGA-OR-A5LR-01A-11D-A29I-10	44145418	80406276	90708791	19	11483										
EIF3B	8662	hgsc.bcm.edu	37	chr7	2394991	2394991	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0508474576271186	3	0.929330005145667	1.40575396825397	5.62301587301587	1.02236652236652	1	1	0	gaaccccgggcgctggagaaCggcgacgcggacgagccctc	16	15	0	1	rs11551167	byfrequency	TCGA-OR-A5LR-01A-11D-A29I-10	TCGA-OR-A5LR-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a4944d75-a6da-45bb-b5b9-3fa3355b0ead	c2a8460f-138e-44eb-a933-a5cd6ca34d8b	.	EIF3B-68	NM_001037283	exon1	c.C435T	p.N145N	GGAGAACGGCGAC	.	4	4	0	0	C|0.787;T|0.213	12	0	12	0	0	T	2394991	C	T	2394991	2	4	57	1	0	0	0	0	0	0	0	1	5024	535	19	1		1	EIF3B	7	2394991	Silent	SNP	C	TCGA-OR-A5LR-01A-11D-A29I-10		2394991	156743672	20	11484										
CLDN23	137075	hgsc.bcm.edu	37	chr8	8560536	8560536	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0508474576271186	3	0.929330005145667	1.40575396825397	5.62301587301587	1.02236652236652	1	1	0	gcagcgtcagcaccatccaaGtggagtggcccgagcccgac	13	15	1	0	rs12548737	byfrequency	TCGA-OR-A5LR-01A-11D-A29I-10	TCGA-OR-A5LR-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a4944d75-a6da-45bb-b5b9-3fa3355b0ead	c2a8460f-138e-44eb-a933-a5cd6ca34d8b	.	.	NM_194284	exon1	c.G628A	p.V210M	ATCCAAGTGGAGT	.	10	5	0	0	G|0.907;A|0.093	0	0	0	0	0	A	8560536	G	A	8560536	3	1	57	1	0	0	0	0	1	0	0	0	3490	1029	36	3	630	3	CLDN23	8	8560536	Missense_Mutation	SNP	G	TCGA-OR-A5LR-01A-11D-A29I-10		8560536	137803486	21	11485										
OPRK1	4986	hgsc.bcm.edu	37	chr8	54163562	54163562	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0508474576271186	3	0.929330005145667	1.40575396825397	5.62301587301587	1.02236652236652	1	1	0	ctcggggcgcaggtagggccCggctccccgcggaagatctg	17	14	1	1	rs1051660	byfrequency	TCGA-OR-A5LR-01A-11D-A29I-10	TCGA-OR-A5LR-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a4944d75-a6da-45bb-b5b9-3fa3355b0ead	c2a8460f-138e-44eb-a933-a5cd6ca34d8b	.	OPRK1-70	NM_000912	exon2	c.G36T	p.P12P	AGGGCCCGGCTCC	.	14	8	0	0	C|0.895;A|0.105	0	0	0	0	0	A	54163562	C	A	54163562	2	1	57	1	0	0	0	0	0	0	0	1	10914	639	23	2		2	OPRK1	8	54163562	Silent	SNP	C	TCGA-OR-A5LR-01A-11D-A29I-10	45603026	54163562	92200460	22	11486										
PLEC	5339	hgsc.bcm.edu	37	chr8	144992388	144992388	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0508474576271186	3	0.929330005145667	1.40575396825397	5.62301587301587	1.02236652236652	1	1	0	agcagctggccggtgccgtcGtcacgacggcaccgcctgag	15	15	1	1	rs75833626	byfrequency	TCGA-OR-A5LR-01A-11D-A29I-10	TCGA-OR-A5LR-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a4944d75-a6da-45bb-b5b9-3fa3355b0ead	c2a8460f-138e-44eb-a933-a5cd6ca34d8b	.	PLEC-141	NM_201380	exon32	c.C12012T	p.D4004D	GCCGTCGTCACGA	.	18	12	0	0	G|0.965;A|0.035	49	21	27	1	0	A	144992388	G	A	144992388	2	1	57	1	0	0	0	0	0	0	0	1	12081	1136	40	1		1	PLEC	8	144992388	Silent	SNP	G	TCGA-OR-A5LR-01A-11D-A29I-10	90828826	144992388	1371634	23	11487										
HSF1	3297	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr8	145535011	145535011	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0508474576271186	3	0.929330005145667	1.40575396825397	5.62301587301587	1.02236652236652	1	1	0	tcctctctctccacagctcaTtcagttcctgatctcactgg	5	16	5	1	novel		TCGA-OR-A5LR-01A-11D-A29I-10	TCGA-OR-A5LR-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a4944d75-a6da-45bb-b5b9-3fa3355b0ead	c2a8460f-138e-44eb-a933-a5cd6ca34d8b	.	HSF1-46	NM_005526	exon6	c.T569A	p.I190N	AGCTCATTCAGTT	.	79	27	50	0	.	2	1	1	0	0	A	145535011	T	A	145535011	3	1	57	1	0	0	0	0	1	0	0	0	7416	1493	52	5	591	5	HSF1	8	145535011	Missense_Mutation	SNP	T	TCGA-OR-A5LR-01A-11D-A29I-10	542623	145535011	829011	24	11488										
TMEM2	23670	broad.mit.edu;ucsc.edu	37	chr9	74359971	74359971	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0508474576271186	3	0.929330005145667	1.40575396825397	5.62301587301587	1.02236652236652	1	1	0	gatcagttcacttcccaaccGttcctggatcatctggatgg	9	12	4	0	novel		TCGA-OR-A5LR-01A-11D-A29I-10	TCGA-OR-A5LR-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a4944d75-a6da-45bb-b5b9-3fa3355b0ead	c2a8460f-138e-44eb-a933-a5cd6ca34d8b	.	TMEM2-92	NM_001135820	exon4	c.C997T	p.R333W	CCAACCGTTCCTG	.	60	7	72	1	.	0	0	0	0	0	A	74359971	G	A	74359971	3	1	57	1	0	0	0	0	1	0	0	0	16158	1144	40	1	3238	1	TMEM2	9	74359971	Missense_Mutation	SNP	G	TCGA-OR-A5LR-01A-11D-A29I-10		74359971	66853460	25	11489										
PPAPDC3	84814	bcgsc.ca	37	chr9	134165546	134165546	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0508474576271186	3	0.929330005145667	1.40575396825397	5.62301587301587	1.02236652236652	1	1	0	cagcccccacctgctggtgaCggggccagagagcgacgcca	14	16	0	2	rs141024100	byfrequency;alternate_allele	TCGA-OR-A5LR-01A-11D-A29I-10	TCGA-OR-A5LR-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a4944d75-a6da-45bb-b5b9-3fa3355b0ead	c2a8460f-138e-44eb-a933-a5cd6ca34d8b	.	PPAPDC3-153	NM_032728	exon1	c.C162T	p.D54D	TGGTGACGGGGCC	.	80	5	40	0	C|0.999;A|0.001	7	7	0	0	0	T	134165546	C	T	134165546	2	4	57	1	0	0	0	0	0	0	0	1	12325	535	19	1		1	PPAPDC3	9	134165546	Silent	SNP	C	TCGA-OR-A5LR-01A-11D-A29I-10	59805575	134165546	7047885	26	11490										
ABCA2	20	broad.mit.edu	37	chr9	139907251	139907251	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0508474576271186	3	0.929330005145667	1.40575396825397	5.62301587301587	1.02236652236652	1	1	0	tcaggatgtcgcctgtgaccAcccgcatctggggcgggtgc	15	13	2	1	novel		TCGA-OR-A5LR-01A-11D-A29I-10	TCGA-OR-A5LR-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a4944d75-a6da-45bb-b5b9-3fa3355b0ead	c2a8460f-138e-44eb-a933-a5cd6ca34d8b	.	ABCA2-90	NM_212533	exon31	c.T5084G	p.V1695G	GTGACCACCCGCA	.	174	50	93	7	.	7	7	0	0	0	C	139907251	A	C	139907251	3	2	57	1	0	0	0	0	1	0	0	0	32	159	6	5	2392	5	ABCA2	9	139907251	Missense_Mutation	SNP	A	TCGA-OR-A5LR-01A-11D-A29I-10	5741705	139907251	1306180	27	11491										
CSGALNACT2	55454	broad.mit.edu	37	chr10	43659419	43659419	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0508474576271186	3	0.929330005145667	1.40575396825397	5.62301587301587	1.02236652236652	1	1	0	tgggacaagggagaggtcttGatgtttttctgtgatgttga	15	3	2	4	rs79064394		TCGA-OR-A5LR-01A-11D-A29I-10	TCGA-OR-A5LR-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a4944d75-a6da-45bb-b5b9-3fa3355b0ead	c2a8460f-138e-44eb-a933-a5cd6ca34d8b	.	CSGALNACT2-69	NM_018590	exon5	c.G1086T	p.L362F	GGTCTTGATGTTT	.	136	5	154	1	.	3	3	0	0	0	T	43659419	G	T	43659419	3	4	57	1	0	0	0	0	1	0	0	0	3945	1281	45	3	1100	3	CSGALNACT2	10	43659419	Missense_Mutation	SNP	G	TCGA-OR-A5LR-01A-11D-A29I-10		43659419	91875328	28	11492										
TYSND1	219743	bcgsc.ca	37	chr10	71906150	71906150	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0508474576271186	3	0.929330005145667	1.40575396825397	5.62301587301587	1.02236652236652	1	1	0	gaagacggcgccggccgcggTcaggacttcgctgccagctc	15	15	1	1	rs4746970	byfrequency	TCGA-OR-A5LR-01A-11D-A29I-10	TCGA-OR-A5LR-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a4944d75-a6da-45bb-b5b9-3fa3355b0ead	c2a8460f-138e-44eb-a933-a5cd6ca34d8b	.	TYSND1-135	NM_173555	exon1	c.A193G	p.T65A	CCGCGGTCAGGAC	.	36	33	9	1	T|0.585;C|0.415	2	0	2	0	0	C	71906150	T	C	71906150	3	2	57	1	0	0	0	0	1	0	0	0	16855	1667	58	4	1523	4	TYSND1	10	71906150	Missense_Mutation	SNP	T	TCGA-OR-A5LR-01A-11D-A29I-10	28246731	71906150	63628597	29	11493										
ADAMTS14	140766	ucsc.edu	37	chr10	72498690	72498690	+	Nonsense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0508474576271186	3	0.929330005145667	1.40575396825397	5.62301587301587	1.02236652236652	1	1	0	tggaccaagtttgggtcatgTtcgcggtcatgtgggggcgg	18	7	2	0	novel		TCGA-OR-A5LR-01A-11D-A29I-10	TCGA-OR-A5LR-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a4944d75-a6da-45bb-b5b9-3fa3355b0ead	c2a8460f-138e-44eb-a933-a5cd6ca34d8b	.	ADAMTS14-232	NM_139155	exon11	c.T1701A	p.C567X	GTCATGTTCGCGG	.	42	4	72	1	.	0	0	0	0	0	A	72498690	T	A	72498690	4	1	57	1	0	0	0	0	0	1	0	0	259	1731	60	5	1743	5	ADAMTS14	10	72498690	Nonsense_Mutation	SNP	T	TCGA-OR-A5LR-01A-11D-A29I-10	592540	72498690	63036057	30	11494										
TAF5	6877	hgsc.bcm.edu	37	chr10	105128134	105128134	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0508474576271186	3	0.929330005145667	1.40575396825397	5.62301587301587	1.02236652236652	1	1	0	tggaggaggcagtggcgggcTccggagccccgggagaggtg	22	9	0	1	rs10883859	byfrequency	TCGA-OR-A5LR-01A-11D-A29I-10	TCGA-OR-A5LR-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a4944d75-a6da-45bb-b5b9-3fa3355b0ead	c2a8460f-138e-44eb-a933-a5cd6ca34d8b	.	TAF5-92	NM_006951	exon1	c.T388G	p.S130A	GCGGGCTCCGGAG	.	8	8	0	0	T|0.623;G|0.377	1	0	1	0	0	G	105128134	T	G	105128134	3	3	57	1	0	0	0	0	1	0	0	0	15565	1551	54	5	390	5	TAF5	10	105128134	Missense_Mutation	SNP	T	TCGA-OR-A5LR-01A-11D-A29I-10	32629444	105128134	30406613	31	11495										
KNDC1	85442	hgsc.bcm.edu	37	chr10	135015263	135015263	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0508474576271186	3	0.929330005145667	1.40575396825397	5.62301587301587	1.02236652236652	1	1	0	cccagccttgtcccccggccCagccggattccagagctgca	10	19	0	1	rs199987564		TCGA-OR-A5LR-01A-11D-A29I-10	TCGA-OR-A5LR-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a4944d75-a6da-45bb-b5b9-3fa3355b0ead	c2a8460f-138e-44eb-a933-a5cd6ca34d8b	.	KNDC1-229	NM_152643	exon17	c.C3248T	p.P1083L	CCGGCCCAGCCGG	.	66	9	6	0	.	9	9	0	0	0	T	135015263	C	T	135015263	3	4	57	1	0	0	0	0	1	0	0	0	8447	594	21	3	3314	3	KNDC1	10	135015263	Missense_Mutation	SNP	C	TCGA-OR-A5LR-01A-11D-A29I-10	29887129	135015263	519484	32	11496										
RASSF7	8045	broad.mit.edu;ucsc.edu	37	chr11	562525	562525	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0508474576271186	3	0.929330005145667	1.40575396825397	5.62301587301587	1.02236652236652	1	1	0	cccgggagcgagagggacagGcacgcctgcaggcactaagt	16	12	0	1	novel		TCGA-OR-A5LR-01A-11D-A29I-10	TCGA-OR-A5LR-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a4944d75-a6da-45bb-b5b9-3fa3355b0ead	c2a8460f-138e-44eb-a933-a5cd6ca34d8b	.	RASSF7-91	NM_001143994	exon3	c.G571A	p.A191T	GGACAGGCACGCC	.	46	5	20	0	.	4	4	0	0	0	A	562525	G	A	562525	3	1	57	1	0	0	0	0	1	0	0	0	13126	1203	42	3	577	3	RASSF7	11	562525	Missense_Mutation	SNP	G	TCGA-OR-A5LR-01A-11D-A29I-10		562525	134443991	33	11497										
SYT8	90019	hgsc.bcm.edu	37	chr11	1858572	1858572	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0508474576271186	3	0.929330005145667	1.40575396825397	5.62301587301587	1.02236652236652	1	1	0	cccggcggcccattgcccagCggcaccccctgcggccagcc	12	22	0	0	rs2292474	byfrequency	TCGA-OR-A5LR-01A-11D-A29I-10	TCGA-OR-A5LR-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a4944d75-a6da-45bb-b5b9-3fa3355b0ead	c2a8460f-138e-44eb-a933-a5cd6ca34d8b	.	SYT8-91	NM_138567	exon9	c.C1117T	p.R373W	GCCCAGCGGCACC	.	10	10	0	0	C|0.602;T|0.398	0	0	0	0	0	T	1858572	C	T	1858572	3	4	57	1	0	0	0	0	1	0	0	0	15517	759	27	1	1151	1	SYT8	11	1858572	Missense_Mutation	SNP	C	TCGA-OR-A5LR-01A-11D-A29I-10	1296047	1858572	133147944	34	11498										
OR51D1	390038	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	4661767	4661767	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0508474576271186	3	0.929330005145667	1.40575396825397	5.62301587301587	1.02236652236652	1	1	0	tctcggagggcagcactcaaGgctttcaacacctgcatctc	9	14	4	0	novel		TCGA-OR-A5LR-01A-11D-A29I-10	TCGA-OR-A5LR-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a4944d75-a6da-45bb-b5b9-3fa3355b0ead	c2a8460f-138e-44eb-a933-a5cd6ca34d8b	.	OR51D1-68	NM_001004751	exon1	c.G747T	p.K249N	ACTCAAGGCTTTC	.	80	69	99	0	.	0	0	0	0	0	T	4661767	G	T	4661767	3	4	57	1	0	0	0	0	1	0	0	0	11122	991	35	3	749	3	OR51D1	11	4661767	Missense_Mutation	SNP	G	TCGA-OR-A5LR-01A-11D-A29I-10	2803195	4661767	130344749	35	11499										
PTPMT1	114971	hgsc.bcm.edu	37	chr11	47587369	47587369	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0508474576271186	3	0.929330005145667	1.40575396825397	5.62301587301587	1.02236652236652	1	1	0	gtgagccgggccggggagccCgggcccctgccccgtccccg	17	19	0	1	novel		TCGA-OR-A5LR-01A-11D-A29I-10	TCGA-OR-A5LR-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a4944d75-a6da-45bb-b5b9-3fa3355b0ead	c2a8460f-138e-44eb-a933-a5cd6ca34d8b	.	PTPMT1-23	NM_001143984	exon1	c.C195T	p.P65P	GGAGCCCGGGCCC	.	35	34	1	0	.	2	1	1	0	0	T	47587369	C	T	47587369	2	4	57	1	0	0	0	0	0	0	0	1	12811	639	23	1		1	PTPMT1	11	47587369	Silent	SNP	C	TCGA-OR-A5LR-01A-11D-A29I-10	42925602	47587369	87419147	36	11500										
OR5D18	219438	bcgsc.ca	37	chr11	55587212	55587212	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0508474576271186	3	0.929330005145667	1.40575396825397	5.62301587301587	1.02236652236652	1	1	0	cctggtttttctggccatctAcaatgtcactgtgctaggga	10	10	3	0	rs7948629	byfrequency	TCGA-OR-A5LR-01A-11D-A29I-10	TCGA-OR-A5LR-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a4944d75-a6da-45bb-b5b9-3fa3355b0ead	c2a8460f-138e-44eb-a933-a5cd6ca34d8b	.	OR5D18-71	NM_001001952	exon1	c.A107G	p.Y36C	CCATCTACAATGT	.	147	6	153	1	A|0.964;G|0.036	0	0	0	0	0	G	55587212	A	G	55587212	3	3	57	1	0	0	0	0	1	0	0	0	11186	391	14	4	109	4	OR5D18	11	55587212	Missense_Mutation	SNP	A	TCGA-OR-A5LR-01A-11D-A29I-10	7999843	55587212	79419304	37	11501										
SLC37A2	219855	bcgsc.ca	37	chr11	124951752	124951752	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0508474576271186	3	0.929330005145667	1.40575396825397	5.62301587301587	1.02236652236652	1	1	0	tggccaaatgctccaaggggCcatgcgaagagcctgctgcc	13	13	0	1	novel		TCGA-OR-A5LR-01A-11D-A29I-10	TCGA-OR-A5LR-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a4944d75-a6da-45bb-b5b9-3fa3355b0ead	c2a8460f-138e-44eb-a933-a5cd6ca34d8b	.	SLC37A2-92	NM_001145290	exon9	c.C835T	p.P279S	AAGGGGCCATGCG	.	94	5	109	0	.	2	2	0	0	0	T	124951752	C	T	124951752	3	4	57	1	0	0	0	0	1	0	0	0	14633	739	26	3	869	3	SLC37A2	11	124951752	Missense_Mutation	SNP	C	TCGA-OR-A5LR-01A-11D-A29I-10	69364540	124951752	10054764	38	11502										
KLRB1	3820	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr12	9751229	9751229	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0508474576271186	3	0.929330005145667	1.40575396825397	5.62301587301587	1.02236652236652	1	1	0	ttgctgccaatatattgggcAgtttaagagacccggtctct	10	9	1	1	novel		TCGA-OR-A5LR-01A-11D-A29I-10	TCGA-OR-A5LR-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a4944d75-a6da-45bb-b5b9-3fa3355b0ead	c2a8460f-138e-44eb-a933-a5cd6ca34d8b	.	KLRB1-90	NM_002258	exon4	c.T280A	p.C94S	TTGGGCAGTTTAA	.	152	11	97	0	.	5	5	0	0	0	T	9751229	A	T	9751229	3	4	57	1	0	0	0	0	1	0	0	0	8435	188	7	5	408	5	KLRB1	12	9751229	Missense_Mutation	SNP	A	TCGA-OR-A5LR-01A-11D-A29I-10		9751229	124100666	39	11503										
PABPC3	5042	broad.mit.edu	37	chr13	25671714	25671714	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0508474576271186	3	0.929330005145667	1.40575396825397	5.62301587301587	1.02236652236652	1	1	0	ctagagtaccatttagtactAtgagaccagcttcttcacag	7	10	2	2	rs61739066	byfrequency	TCGA-OR-A5LR-01A-11D-A29I-10	TCGA-OR-A5LR-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a4944d75-a6da-45bb-b5b9-3fa3355b0ead	c2a8460f-138e-44eb-a933-a5cd6ca34d8b	.	PABPC3-72	NM_030979	exon1	c.A1378G	p.M460V	AGTACTATGAGAC	.	117	4	141	0	A|0.996;G|0.004	0	0	0	0	0	G	25671714	A	G	25671714	3	3	57	1	0	0	0	0	1	0	0	0	11394	449	16	4	1380	4	PABPC3	13	25671714	Missense_Mutation	SNP	A	TCGA-OR-A5LR-01A-11D-A29I-10		25671714	89498164	40	11504										
ING1	3621	hgsc.bcm.edu	37	chr13	111368316	111368316	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0508474576271186	3	0.929330005145667	1.40575396825397	5.62301587301587	1.02236652236652	1	1	0	gacagtttcaggccgcatctCtgctgacccgagggtggggc	15	12	2	1	rs9555726	byfrequency	TCGA-OR-A5LR-01A-11D-A29I-10	TCGA-OR-A5LR-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a4944d75-a6da-45bb-b5b9-3fa3355b0ead	c2a8460f-138e-44eb-a933-a5cd6ca34d8b	.	ING1-515	NM_005537	exon1	c.C526T	p.L176L	GCATCTCTGCTGA	.	6	6	0	0	C|0.372;T|0.628	3	0	3	0	0	T	111368316	C	T	111368316	2	4	57	1	0	0	0	0	0	0	0	1	7756	912	32	3		3	ING1	13	111368316	Silent	SNP	C	TCGA-OR-A5LR-01A-11D-A29I-10	85696602	111368316	3801562	41	11505										
CDH24	64403	bcgsc.ca	37	chr14	23518918	23518918	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0508474576271186	3	0.929330005145667	1.40575396825397	5.62301587301587	1.02236652236652	1	1	0	ctactgttgccaacttcatcTctgtccagggcccggatgac	9	14	2	1	rs11623976	byfrequency	TCGA-OR-A5LR-01A-11D-A29I-10	TCGA-OR-A5LR-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a4944d75-a6da-45bb-b5b9-3fa3355b0ead	c2a8460f-138e-44eb-a933-a5cd6ca34d8b	.	CDH24-90	NM_022478	exon11	c.A1629G	p.R543R	TTCATCTCTGTCC	.	83	5	75	0	T|0.841;C|0.159	0	0	0	0	0	C	23518918	T	C	23518918	2	2	57	1	0	0	0	0	0	0	0	1	3115	1548	54	4		4	CDH24	14	23518918	Silent	SNP	T	TCGA-OR-A5LR-01A-11D-A29I-10		23518918	83830622	42	11506										
LIPC	3990	bcgsc.ca	37	chr15	58834741	58834741	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0508474576271186	3	0.929330005145667	1.40575396825397	5.62301587301587	1.02236652236652	1	1	0	gctgtcttccaggaatctgtGcaactctctcgaagccatgt	9	12	3	0	rs690	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-OR-A5LR-01A-11D-A29I-10	TCGA-OR-A5LR-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a4944d75-a6da-45bb-b5b9-3fa3355b0ead	c2a8460f-138e-44eb-a933-a5cd6ca34d8b	.	LIPC-91	NM_000236	exon4	c.G465T	p.V155V	ATCTGTGCAACTC	.	187	7	232	2	G|0.489;T|0.511	0	0	0	0	0	T	58834741	G	T	58834741	2	4	57	1	0	0	0	0	0	0	0	1	8844	1306	46	3		3	LIPC	15	58834741	Silent	SNP	G	TCGA-OR-A5LR-01A-11D-A29I-10		58834741	43696651	43	11507										
C16orf3	750	bcgsc.ca	37	chr16	90095596	90095597	+	Missense_Mutation	DNP	AT	AT	GC													0.0508474576271186	3	0.929330005145667	1.40575396825397	5.62301587301587	1.02236652236652	1	1	0	ggcagcttacggggcaggctAtggggcagcctacggggcag					novel		TCGA-OR-A5LR-01A-11D-A29I-10	TCGA-OR-A5LR-10A-01D-A29L-10	AT	AT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a4944d75-a6da-45bb-b5b9-3fa3355b0ead	c2a8460f-138e-44eb-a933-a5cd6ca34d8b	.	C16orf3-90	NM_001214	exon1	c.A154G	p.I52A	AGGCTATGGGGCA	.	110	0	27	0	T|0.361;C|0.639	0	0	0	0	0	GC	90095597	AT	GC	90095596	3	3	57	1	0	0	0	0	1	0	0	0	1816	449	16	4	202	4	C16orf3	16	90095596	Missense_Mutation	DNP	AT	TCGA-OR-A5LR-01A-11D-A29I-10		90095596	259157	44	11508										
KRTAP4-11	653240	hgsc.bcm.edu	37	chr17	39274238	39274238	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0508474576271186	3	0.929330005145667	1.40575396825397	5.62301587301587	1.02236652236652	1	1	0	gacacacagcagctggggcgAcagcagctggagatgcagca	15	11	0	1	novel		TCGA-OR-A5LR-01A-11D-A29I-10	TCGA-OR-A5LR-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a4944d75-a6da-45bb-b5b9-3fa3355b0ead	c2a8460f-138e-44eb-a933-a5cd6ca34d8b	.	.	NM_033059	exon1	c.T330C	p.C110C	GGGGCGACAGCAG	.	104	7	31	0	.	0	0	0	0	0	G	39274238	A	G	39274238	2	3	57	1	0	0	0	0	0	0	0	1	8571	273	10	4		4	KRTAP4-11	17	39274238	Silent	SNP	A	TCGA-OR-A5LR-01A-11D-A29I-10		39274238	41920972	45	11509										
SP6	80320	hgsc.bcm.edu	37	chr17	45925222	45925222	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0508474576271186	3	0.929330005145667	1.40575396825397	5.62301587301587	1.02236652236652	1	1	0	ctccggggcggctacttccaAggccttagccccgtcgggcg	14	16	0	0	novel		TCGA-OR-A5LR-01A-11D-A29I-10	TCGA-OR-A5LR-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a4944d75-a6da-45bb-b5b9-3fa3355b0ead	c2a8460f-138e-44eb-a933-a5cd6ca34d8b	.	SP6-91	NM_001258248	exon2	c.T574G	p.L192V	CTTCCAAGGCCTT	.	13	9	2	0	.	2	0	2	0	0	C	45925222	A	C	45925222	3	2	57	1	0	0	0	0	1	0	0	0	15003	69	3	5	560	5	SP6	17	45925222	Missense_Mutation	SNP	A	TCGA-OR-A5LR-01A-11D-A29I-10	6650984	45925222	35269988	46	11510										
SP2	6668	broad.mit.edu	37	chr17	45994401	45994401	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0508474576271186	3	0.929330005145667	1.40575396825397	5.62301587301587	1.02236652236652	1	1	0	agatcccccagcaggctctgCgggtggtgcaggcggcatct	15	13	2	1	novel		TCGA-OR-A5LR-01A-11D-A29I-10	TCGA-OR-A5LR-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a4944d75-a6da-45bb-b5b9-3fa3355b0ead	c2a8460f-138e-44eb-a933-a5cd6ca34d8b	.	SP2-90	NM_003110	exon3	c.C964T	p.R322W	GCTCTGCGGGTGG	.	66	4	56	1	.	2	2	0	0	0	T	45994401	C	T	45994401	3	4	57	1	0	0	0	0	1	0	0	0	14999	759	27	1	974	1	SP2	17	45994401	Missense_Mutation	SNP	C	TCGA-OR-A5LR-01A-11D-A29I-10	69179	45994401	35200809	47	11511										
FADS6	283985	ucsc.edu	37	chr17	72889685	72889685	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0508474576271186	3	0.929330005145667	1.40575396825397	5.62301587301587	1.02236652236652	1	1	0	gtaggttccatgggctccgtGggttccatggactctgtggg	16	9	1	0	rs2683274	byfrequency	TCGA-OR-A5LR-01A-11D-A29I-10	TCGA-OR-A5LR-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a4944d75-a6da-45bb-b5b9-3fa3355b0ead	c2a8460f-138e-44eb-a933-a5cd6ca34d8b	.	FADS6-22	NM_178128	exon1	c.C9T	p.P3P	CTCCGTGGGTTCC	.	102	31	33	3	G|0.500;A|0.500	0	0	0	0	0	A	72889685	G	A	72889685	2	1	57	1	0	0	0	0	0	0	0	1	5384	1335	47	3		3	FADS6	17	72889685	Silent	SNP	G	TCGA-OR-A5LR-01A-11D-A29I-10	26895284	72889685	8305525	48	11512										
AATK	9625	hgsc.bcm.edu	37	chr17	79096115	79096115	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0508474576271186	3	0.929330005145667	1.40575396825397	5.62301587301587	1.02236652236652	1	1	0	gcagtcagggtcgtggccggCggcgggtgcggcctcctcta	18	13	2	0	rs61738821	byfrequency	TCGA-OR-A5LR-01A-11D-A29I-10	TCGA-OR-A5LR-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a4944d75-a6da-45bb-b5b9-3fa3355b0ead	c2a8460f-138e-44eb-a933-a5cd6ca34d8b	.	AATK-933	NM_001080395	exon11	c.G1621A	p.A541T	GGCCGGCGGCGGG	.	10	10	0	0	C|0.850;T|0.150	0	0	0	0	0	T	79096115	C	T	79096115	3	4	57	1	0	0	0	0	1	0	0	0	26	768	27	1	2519	1	AATK	17	79096115	Missense_Mutation	SNP	C	TCGA-OR-A5LR-01A-11D-A29I-10	6206430	79096115	2099095	49	11513										
VAPA	9218	broad.mit.edu;bcgsc.ca	37	chr18	9914291	9914291	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0508474576271186	3	0.929330005145667	1.40575396825397	5.62301587301587	1.02236652236652	1	1	0	ggccatggcgaagcacgagcAgatcctggtcctcgatccgc	13	14	0	1	novel		TCGA-OR-A5LR-01A-11D-A29I-10	TCGA-OR-A5LR-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a4944d75-a6da-45bb-b5b9-3fa3355b0ead	c2a8460f-138e-44eb-a933-a5cd6ca34d8b	.	VAPA-90	NM_003574	exon1	c.A38G	p.Q13R	ACGAGCAGATCCT	.	86	6	47	0	.	92	91	1	0	0	G	9914291	A	G	9914291	3	3	57	1	0	0	0	0	1	0	0	0	17159	188	7	4	40	4	VAPA	18	9914291	Missense_Mutation	SNP	A	TCGA-OR-A5LR-01A-11D-A29I-10		9914291	68162957	50	11514										
GNAL	2774	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr18	11752854	11752854	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0508474576271186	3	0.929330005145667	1.40575396825397	5.62301587301587	1.02236652236652	1	1	0	ctttctgtttgtttgcagggGctggtgagtctgggaaaagc	15	6	2	1	novel		TCGA-OR-A5LR-01A-11D-A29I-10	TCGA-OR-A5LR-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a4944d75-a6da-45bb-b5b9-3fa3355b0ead	c2a8460f-138e-44eb-a933-a5cd6ca34d8b	.	GNAL-228	NM_182978	exon2	c.G379A	p.A127T	GCAGGGGCTGGTG	.	112	86	94	0	.	0	0	0	0	0	A	11752854	G	A	11752854	3	1	57	1	0	0	0	0	1	0	0	0	6527	1203	42	3	534	3	GNAL	18	11752854	Missense_Mutation	SNP	G	TCGA-OR-A5LR-01A-11D-A29I-10	1838563	11752854	66324394	51	11515										
MUC16	94025	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	9063253	9063253	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0508474576271186	3	0.929330005145667	1.40575396825397	5.62301587301587	1.02236652236652	1	1	0	agtggattcatgtccagaacTggaggtccccacatcggtca	11	11	2	1	novel		TCGA-OR-A5LR-01A-11D-A29I-10	TCGA-OR-A5LR-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a4944d75-a6da-45bb-b5b9-3fa3355b0ead	c2a8460f-138e-44eb-a933-a5cd6ca34d8b	.	MUC16-566	NM_024690	exon3	c.A24193G	p.S8065G	CAGAACTGGAGGT	.	165	113	245	0	.	0	0	0	0	0	C	9063253	T	C	9063253	3	2	57	1	0	0	0	0	1	0	0	0	10001	1580	55	4	19658	4	MUC16	19	9063253	Missense_Mutation	SNP	T	TCGA-OR-A5LR-01A-11D-A29I-10		9063253	50065730	52	11516										
ISYNA1	51477	bcgsc.ca	37	chr19	18546678	18546678	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0508474576271186	3	0.929330005145667	1.40575396825397	5.62301587301587	1.02236652236652	1	1	0	cggaactgcaatggcgccgaTaggttctccccatcgttgtt	11	12	1	0	rs2303697	byfrequency	TCGA-OR-A5LR-01A-11D-A29I-10	TCGA-OR-A5LR-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a4944d75-a6da-45bb-b5b9-3fa3355b0ead	c2a8460f-138e-44eb-a933-a5cd6ca34d8b	.	ISYNA1-92	NM_016368	exon8	c.A1029G	p.L343L	CGCCGATAGGTTC	.	183	7	164	0	T|0.535;C|0.465	93	93	0	0	0	C	18546678	T	C	18546678	2	2	57	1	0	0	0	0	0	0	0	1	7888	1393	49	4		4	ISYNA1	19	18546678	Silent	SNP	T	TCGA-OR-A5LR-01A-11D-A29I-10	9483425	18546678	40582305	53	11517										
MAG	4099	bcgsc.ca	37	chr19	35786868	35786868	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0508474576271186	3	0.929330005145667	1.40575396825397	5.62301587301587	1.02236652236652	1	1	0	tacaccttctcagagcacagCgtcctggatatcgtcagtga	9	12	2	2	rs2301600	byfrequency	TCGA-OR-A5LR-01A-11D-A29I-10	TCGA-OR-A5LR-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a4944d75-a6da-45bb-b5b9-3fa3355b0ead	c2a8460f-138e-44eb-a933-a5cd6ca34d8b	.	MAG-947	NM_080600	exon4	c.C399T	p.S133S	GCACAGCGTCCTG	.	73	5	86	0	C|0.780;T|0.220	0	0	0	0	0	T	35786868	C	T	35786868	2	4	57	1	0	0	0	0	0	0	0	1	9190	767	27	1		1	MAG	19	35786868	Silent	SNP	C	TCGA-OR-A5LR-01A-11D-A29I-10	17240190	35786868	23342115	54	11518										
RUNX1	861	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr21	36259202	36259202	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0508474576271186	3	0.929330005145667	1.40575396825397	5.62301587301587	1.02236652236652	1	1	0	aggcagcacggagcagaggaAgttggggctgtcggtgcgca	19	8	0	1	novel		TCGA-OR-A5LR-01A-11D-A29I-10	TCGA-OR-A5LR-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a4944d75-a6da-45bb-b5b9-3fa3355b0ead	c2a8460f-138e-44eb-a933-a5cd6ca34d8b	.	RUNX1-5146	NM_001754	exon4	c.T289C	p.F97L	AGAGGAAGTTGGG	.	104	23	76	0	.	0	0	0	0	0	G	36259202	A	G	36259202	3	3	57	1	0	0	0	0	1	0	0	0	13781	72	3	4	1210	4	RUNX1	21	36259202	Missense_Mutation	SNP	A	TCGA-OR-A5LR-01A-11D-A29I-10		36259202	11870693	55	11519										
LIMK2	3985	broad.mit.edu	37	chr22	31674324	31674324	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.0508474576271186	3	0.929330005145667	1.40575396825397	5.62301587301587	1.02236652236652	1	1	0	ggactcctttgaggccctctCcctgtacctgggggagctgg	14	13	1	1	rs149034313	byfrequency	TCGA-OR-A5LR-01A-11D-A29I-10	TCGA-OR-A5LR-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a4944d75-a6da-45bb-b5b9-3fa3355b0ead	c2a8460f-138e-44eb-a933-a5cd6ca34d8b	.	LIMK2-548	NM_005569	exon16	c.C1814G	p.S605C	CCCTCTCCCTGTA	.	52	3	66	0	C|0.998;G|0.002	3	3	0	0	0	G	31674324	C	G	31674324	3	3	57	1	0	0	0	0	1	0	0	0	8825	855	30	3	2289	3	LIMK2	22	31674324	Missense_Mutation	SNP	C	TCGA-OR-A5LR-01A-11D-A29I-10		31674324	19630242	56	11520										
CELSR1	9620	ucsc.edu;bcgsc.ca	37	chr22	46760481	46760481	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0508474576271186	3	0.929330005145667	1.40575396825397	5.62301587301587	1.02236652236652	1	1	0	ctcctggtccggggggtactCtccacggtgactgccctgct	13	15	1	1	rs9615351	byfrequency	TCGA-OR-A5LR-01A-11D-A29I-10	TCGA-OR-A5LR-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a4944d75-a6da-45bb-b5b9-3fa3355b0ead	c2a8460f-138e-44eb-a933-a5cd6ca34d8b	.	CELSR1-525	NM_014246	exon33	c.G8707C	p.E2903Q	GGTACTCTCCACG	.	52	47	12	0	C|0.700;G|0.300	1	0	1	0	0	G	46760481	C	G	46760481	3	3	57	1	0	0	0	0	1	0	0	0	3227	922	32	3	349	3	CELSR1	22	46760481	Missense_Mutation	SNP	C	TCGA-OR-A5LR-01A-11D-A29I-10	15086157	46760481	4544085	57	11521										
CDKL5	6792	ucsc.edu;bcgsc.ca	37	chrX	18622933	18622933	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0508474576271186	3	0.929330005145667	1.40575396825397	5.62301587301587	1.02236652236652	1	1	0	gggcttggatggaagcttgaGcatagggcaagggatggcag	19	5	0	1	novel		TCGA-OR-A5LR-01A-11D-A29I-10	TCGA-OR-A5LR-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a4944d75-a6da-45bb-b5b9-3fa3355b0ead	c2a8460f-138e-44eb-a933-a5cd6ca34d8b	.	CDKL5-838	NM_003159	exon12	c.G1889A	p.S630N	GCTTGAGCATAGG	.	292	120	214	3	.	0	0	0	0	0	A	18622933	G	A	18622933	3	1	57	1	0	0	0	0	1	0	0	0	3163	971	34	3	1931	3	CDKL5	23	18622933	Missense_Mutation	SNP	G	TCGA-OR-A5LR-01A-11D-A29I-10		18622933	136647627	58	11522										
MAOA	4128	broad.mit.edu	37	chrX	43595521	43595523	+	In_Frame_Del	DEL	AAA	AAA	-													0.0508474576271186	3	0.929330005145667	1.40575396825397	5.62301587301587	1.02236652236652	1	1	0	acttgctaagctacataaggAaataaggtaagaatttataa					novel		TCGA-OR-A5LR-01A-11D-A29I-10	TCGA-OR-A5LR-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a4944d75-a6da-45bb-b5b9-3fa3355b0ead	c2a8460f-138e-44eb-a933-a5cd6ca34d8b	.	MAOA-194	NM_000240	exon10	c.1100_1102del	p.367_368del	ATAAGGAAATAAG	.	259	7	193	0	.	0	0	0	0	0	-	43595523	AAA	-	43595521	7	5	57	1	0	1	0	1	0	0	0	0	9253	246	9	0	1138	0	MAOA	23	43595521	In_Frame_Del	DEL	AAA	TCGA-OR-A5LR-01A-11D-A29I-10	24972588	43595521	111675039	59	11523	128	2								
MAOA	4128	broad.mit.edu;bcgsc.ca	37	chrX	43595525	43595530	+	In_Frame_Del	DEL	AAGGTA	AAGGTA	-													0.0508474576271186	3	0.929330005145667	1.40575396825397	5.62301587301587	1.02236652236652	1	1	0	gctaagctacataaggaaatAaggtaagaatttataactga					novel		TCGA-OR-A5LR-01A-11D-A29I-10	TCGA-OR-A5LR-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a4944d75-a6da-45bb-b5b9-3fa3355b0ead	c2a8460f-138e-44eb-a933-a5cd6ca34d8b	.	MAOA-194	NM_000240	exon10	c.1104_1106del	p.368_369del	GGAAATAAGGTAA	.	244	7	185	0	.	0	0	0	0	0	-	43595530	AAGGTA	-	43595525	7	5	57	1	0	1	0	1	0	0	0	0	9253	352	13	0	1142	0	MAOA	23	43595525	In_Frame_Del	DEL	AAGGTA	TCGA-OR-A5LR-01A-11D-A29I-10	4	43595525	111675035	60	11524	128	2								
IPP	3652	bcgsc.ca	37	chr1	46195375	46195375	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0405405405405405	3	1	0.917214912280702	0	1.10065789473684	0.142857142857143	0.738095238095239	0	acttgttctctttgggagatTtgcatacttcacagtactct	7	9	3	1	rs28375469	byfrequency	TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	.	IPP-91	NM_001145349	exon4	c.A791G	p.K264R	GGAGATTTGCATA	.	57	4	114	0	T|0.709;C|0.291	2	2	0	0	0	C	46195375	T	C	46195375	3	2	58	1	0	0	0	0	1	0	0	0	7821	1841	64	4	1089	4	IPP	1	46195375	Missense_Mutation	SNP	T	TCGA-P6-A5OF-01A-11D-A29I-10		46195375	203055246	1	11525										
FLG	2312	bcgsc.ca	37	chr1	152281479	152281479	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0405405405405405	3	1	0.917214912280702	0	1.10065789473684	0.142857142857143	0.738095238095239	0	ccgtgaccggctctgtcttcGtgatgggacccagggtgtct	14	12	3	2	rs3126079	byfrequency	TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	.	FLG-106	NM_002016	exon3	c.C5883A	p.H1961Q	GTCTTCGTGATGG	.	246	7	409	4	A|0.000;G|0.622;T|0.378	0	0	0	0	0	T	152281479	G	T	152281479	3	4	58	1	0	0	0	0	1	0	0	0	5941	1136	40	2	6306	2	FLG	1	152281479	Missense_Mutation	SNP	G	TCGA-P6-A5OF-01A-11D-A29I-10	106086104	152281479	96969142	2	11526										
TOR3A	64222	hgsc.bcm.edu	37	chr1	179051300	179051300	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0405405405405405	3	1	0.917214912280702	0	1.10065789473684	0.142857142857143	0.738095238095239	0	ggcgccagctttggctctttTtcctgctgctgctcccgggc	12	15	1	0	rs2296377	byfrequency	TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	.	TOR3A-90	NM_022371	exon1	c.T37C	p.F13L	CTCTTTTTCCTGC	.	5	5	0	0	T|0.229;C|0.771	1	0	1	0	0	C	179051300	T	C	179051300	3	2	58	1	0	0	0	0	1	0	0	0	16414	1841	64	4	39	4	TOR3A	1	179051300	Missense_Mutation	SNP	T	TCGA-P6-A5OF-01A-11D-A29I-10	26769821	179051300	70199321	3	11527										
THSD7B	80731	bcgsc.ca	37	chr2	137917922	137917922	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0405405405405405	3	1	0.917214912280702	0	1.10065789473684	0.142857142857143	0.738095238095239	0	atccatgaaaactgtcatgaTcctcaggggaaaaaaggtga	10	7	2	3	rs4954474	byfrequency	TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	.	THSD7B-75	.	.	.	.	TCATGATCCTCAG	.	137	7	231	0	T|0.686;A|0.314	2	2	0	0	0	A	137917922	T	A	137917922	3	1	58	1	0	0	0	0	1	0	0	0	15917	1432	50	5	1434	5	THSD7B	2	137917922	Missense_Mutation	SNP	T	TCGA-P6-A5OF-01A-11D-A29I-10		137917922	105281451	4	11528										
SP140	11262	broad.mit.edu	37	chr2	231174695	231174695	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0405405405405405	3	1	0.917214912280702	0	1.10065789473684	0.142857142857143	0.738095238095239	0	ggaggggagctgttctgttgCgacacttgttcaagagtctt	14	7	3	1	rs186449912		TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	.	SP140-90	NM_007237	exon23	c.C2115T	p.C705C	CTGTTGCGACACT	.	193	5	381	0	C|0.999;T|0.001	11	11	0	0	0	T	231174695	C	T	231174695	2	4	58	1	0	0	0	0	0	0	0	1	14997	776	27	1		1	SP140	2	231174695	Silent	SNP	C	TCGA-P6-A5OF-01A-11D-A29I-10	93256773	231174695	12024678	5	11529										
PLCH1	23007	broad.mit.edu	37	chr3	155199167	155199167	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0405405405405405	3	1	0.917214912280702	0	1.10065789473684	0.142857142857143	0.738095238095239	0	ctttgaatatagcacttggcAgttgtcttcctggtcaaagg	10	8	2	1	novel		TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	.	PLCH1-151	NM_001130960	exon23	c.T4672A	p.C1558S	CTTGGCAGTTGTC	.	72	3	134	0	.	0	0	0	0	0	T	155199167	A	T	155199167	3	4	58	1	0	0	0	0	1	0	0	0	12066	188	7	5	413	5	PLCH1	3	155199167	Missense_Mutation	SNP	A	TCGA-P6-A5OF-01A-11D-A29I-10		155199167	42823263	6	11530										
KNG1	3827	broad.mit.edu;bcgsc.ca	37	chr3	186460034	186460034	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0405405405405405	3	1	0.917214912280702	0	1.10065789473684	0.142857142857143	0.738095238095239	0	cctccccaaaatgtcctggaCgcccctggaagtcagttagt	9	14	1	0	rs201737072		TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	.	KNG1-92	NM_001102416	exon10	c.C1849T	p.R617C	CCTGGACGCCCCT	.	51	5	91	0	C|0.999;T|0.000	0	0	0	0	0	T	186460034	C	T	186460034	3	4	58	1	0	0	0	0	1	0	0	0	8448	536	19	1	1887	1	KNG1	3	186460034	Missense_Mutation	SNP	C	TCGA-P6-A5OF-01A-11D-A29I-10	31260867	186460034	11562396	7	11531										
HTT	3064	broad.mit.edu	37	chr4	3076604	3076609	+	In_Frame_Del	DEL	CAGCAG	CAGCAG	-													0.0405405405405405	3	1	0.917214912280702	0	1.10065789473684	0.142857142857143	0.738095238095239	0	tcgagtccctcaagtccttcCagcagcagcagcagcagcag					rs10618869	alternate_allele	TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	.	HTT-281	NM_002111	exon1	c.52_57del	p.18_19del	TCCTTCCAGCAGC	.	16	5	9	0	.	0	0	0	0	0	-	3076609	CAGCAG	-	3076604	7	5	58	1	0	1	0	1	0	0	0	0	7478	595	21	0	54	0	HTT	4	3076604	In_Frame_Del	DEL	CAGCAG	TCGA-P6-A5OF-01A-11D-A29I-10		3076604	188077672	8	11532										
NMU	10874	hgsc.bcm.edu	37	chr4	56502304	56502304	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0405405405405405	3	1	0.917214912280702	0	1.10065789473684	0.142857142857143	0.738095238095239	0	gcagcagcaggagcggggacGccgcggccacctgtccggcg	18	15	0	0	rs35771241		TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	.	NMU-650	NM_006681	exon1	c.C56A	p.A19E	GGGGACGCCGCGG	.	12	8	0	0	G|0.970;T|0.030	0	0	0	0	0	T	56502304	G	T	56502304	3	4	58	1	0	0	0	0	1	0	0	0	10534	1087	38	2	504	2	NMU	4	56502304	Missense_Mutation	SNP	G	TCGA-P6-A5OF-01A-11D-A29I-10	53425700	56502304	134651972	9	11533										
MAB21L2	10586	broad.mit.edu;bcgsc.ca	37	chr4	151504413	151504413	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0405405405405405	3	1	0.917214912280702	0	1.10065789473684	0.142857142857143	0.738095238095239	0	ccaccgaatttgaggtggtgCtctacctaaaccagatgggc	11	11	1	2	novel		TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	.	MAB21L2-91	NM_006439	exon1	c.C232T	p.L78F	GTGGTGCTCTACC	.	142	6	180	0	.	0	0	0	0	0	T	151504413	C	T	151504413	3	4	58	1	0	0	0	0	1	0	0	0	9170	797	28	3	234	3	MAB21L2	4	151504413	Missense_Mutation	SNP	C	TCGA-P6-A5OF-01A-11D-A29I-10	95002109	151504413	39649863	10	11534										
SRD5A1	6715	hgsc.bcm.edu	37	chr5	6633779	6633779	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0405405405405405	3	1	0.917214912280702	0	1.10065789473684	0.142857142857143	0.738095238095239	0	ggctgcgcggtcttcgcgcgCaatcgtcagacgaactcagt	13	13	3	1	rs248793	byfrequency	TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	.	SRD5A1-90	NM_001047	exon1	c.C90G	p.R30R	CGCGCGCAATCGT	.	8	8	0	0	C|0.454;G|0.546	4	0	4	0	0	G	6633779	C	G	6633779	2	3	58	1	0	0	0	0	0	0	0	1	15175	697	25	3		3	SRD5A1	5	6633779	Silent	SNP	C	TCGA-P6-A5OF-01A-11D-A29I-10		6633779	174281481	11	11535										
PCDHAC1	56135	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	140307778	140307778	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0405405405405405	3	1	0.917214912280702	0	1.10065789473684	0.142857142857143	0.738095238095239	0	ccgaaggacaatcactgtgtCagttgctgatgtgaatgaca	11	8	2	3	novel		TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	.	PCDHAC1-28	NM_031882	exon1	c.C1301T	p.S434L	CTGTGTCAGTTGC	.	108	49	110	0	.	1	0	1	0	0	T	140307778	C	T	140307778	3	4	58	1	0	0	0	0	1	0	0	0	11561	838	29	3	1303	3	PCDHAC1	5	140307778	Missense_Mutation	SNP	C	TCGA-P6-A5OF-01A-11D-A29I-10	133673999	140307778	40607482	12	11536										
HAVCR1	26762	broad.mit.edu	37	chr5	156482501	156482501	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0405405405405405	3	1	0.917214912280702	0	1.10065789473684	0.142857142857143	0.738095238095239	0	tggcagggtagtgtgacagaTggacctgcctctccaccaac	12	12	1	2	novel		TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	.	HAVCR1-92	NM_001099414	exon3	c.A90C	p.P30P	GACAGATGGACCT	.	234	8	254	4	.	0	0	0	0	0	G	156482501	T	G	156482501	2	3	58	1	0	0	0	0	0	0	0	1	6994	1451	51	5		5	HAVCR1	5	156482501	Silent	SNP	T	TCGA-P6-A5OF-01A-11D-A29I-10	16174723	156482501	24432759	13	11537										
AGXT2L2	85007	hgsc.bcm.edu	37	chr5	177659519	177659519	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0405405405405405	3	1	0.917214912280702	0	1.10065789473684	0.142857142857143	0.738095238095239	0	agccgttgcctcagggccagCgtgtcggccttcgggcgctg	16	14	1	0	rs116735771	byfrequency	TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	.	AGXT2L2-91	NM_153373	exon1	c.G33C	p.T11T	GGCCAGCGTGTCG	.	6	4	0	0	C|0.854;G|0.146	14	6	8	0	0	G	177659519	C	G	177659519	2	3	58	1	0	0	0	0	0	0	0	1	407	755	27	2		2	AGXT2L2	5	177659519	Silent	SNP	C	TCGA-P6-A5OF-01A-11D-A29I-10	21177018	177659519	3255741	14	11538										
SAMD5	389432	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr6	147830225	147830225	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0405405405405405	3	1	0.917214912280702	0	1.10065789473684	0.142857142857143	0.738095238095239	0	ggcgcccgcgcaccgccgccGtatcctggaggccgtgcgcc	15	19	0	0	novel		TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	.	SAMD5-68	NM_001030060	exon1	c.G161A	p.R54H	GCCGCCGTATCCT	.	40	7	59	0	.	0	0	0	0	0	A	147830225	G	A	147830225	3	1	58	1	0	0	0	0	1	0	0	0	13858	1145	40	1	163	1	SAMD5	6	147830225	Missense_Mutation	SNP	G	TCGA-P6-A5OF-01A-11D-A29I-10		147830225	23284842	15	11539										
LRP11	84918	hgsc.bcm.edu	37	chr6	150184882	150184882	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0405405405405405	3	1	0.917214912280702	0	1.10065789473684	0.142857142857143	0.738095238095239	0	cgctgtagccgccgctgcccGggcccgggcagtcctcctgg	15	18	0	0	rs9322225		TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	.	LRP11-90	NM_032832	exon1	c.C275G	p.P92R	CTGCCCGGGCCCG	.	4	4	0	0	G|0.492;C|0.508	0	0	0	0	0	C	150184882	G	C	150184882	3	2	58	1	0	0	0	0	1	0	0	0	8980	1116	39	2	1255	2	LRP11	6	150184882	Missense_Mutation	SNP	G	TCGA-P6-A5OF-01A-11D-A29I-10	2354657	150184882	20930185	16	11540										
TWISTNB	221830	hgsc.bcm.edu;bcgsc.ca	37	chr7	19748559	19748560	+	Frame_Shift_Ins	INS	-	-	T													0.0405405405405405	3	1	0.917214912280702	0	1.10065789473684	0.142857142857143	0.738095238095239	0	aagtcggcaactctaggcaaINSggcaggacgccagcctgccc					novel		TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	.	TWISTNB-91	NM_001002926	exon1	c.81_82insA	p.P27fs	TAGGCAAGGCAGG	.	74	12	106	0	.	0	0	0	0	0	T	19748560	-	T	19748559	7	5	58	1	0	1	1	0	0	0	0	0	16822	59	3	0	951	0	TWISTNB	7	19748559	Frame_Shift_Ins	INS	-	TCGA-P6-A5OF-01A-11D-A29I-10		19748559	139390104	17	11541	129	3								
TWISTNB	221830	hgsc.bcm.edu	37	chr7	19748560	19748582	+	Frame_Shift_Del	DEL	GGCAGGACGCCAGCCTGCCCTAC	GGCAGGACGCCAGCCTGCCCTAC	-													0.0405405405405405	3	1	0.917214912280702	0	1.10065789473684	0.142857142857143	0.738095238095239	0	aagtcggcaactctaggcaaGgcaggacgccagcctgccct					novel		TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10	GGCAGGACGCCAGCCTGCCCTAC	GGCAGGACGCCAGCCTGCCCTAC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	.	TWISTNB-91	NM_001002926	exon1	c.58_80del	p.20_27del	AGGCAAGGCAGGA	.	74	0	106	0	.	0	0	0	0	0	-	19748582	GGCAGGACGCCAGCCTGCCCTAC	-	19748560	7	5	58	1	0	1	0	1	0	0	0	0	16822	1000	35	0	952	0	TWISTNB	7	19748560	Frame_Shift_Del	DEL	GGCAGGACGCCAGCCTGCCCTAC	TCGA-P6-A5OF-01A-11D-A29I-10	1	19748560	139390103	18	11542	129	3								
TWISTNB	221830	bcgsc.ca	37	chr7	19748562	19748582	+	In_Frame_Del	DEL	CAGGACGCCAGCCTGCCCTAC	CAGGACGCCAGCCTGCCCTAC	-													0.0405405405405405	3	1	0.917214912280702	0	1.10065789473684	0.142857142857143	0.738095238095239	0	gtcggcaactctaggcaaggCaggacgccagcctgccctac					novel		TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10	CAGGACGCCAGCCTGCCCTAC	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	.	TWISTNB-91	NM_001002926	exon1	c.58_78del	p.20_26del	GCAAGGCAGGACG	.	72	4	104	0	.	0	0	0	0	0	-	19748582	CAGGACGCCAGCCTGCCCTAC	-	19748562	7	5	58	1	0	1	0	1	0	0	0	0	16822	697	25	0	954	0	TWISTNB	7	19748562	In_Frame_Del	DEL	CAGGACGCCAGCCTGCCCTAC	TCGA-P6-A5OF-01A-11D-A29I-10	2	19748562	139390101	19	11543	129	3								
GPR141	353345	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	37780431	37780431	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0405405405405405	3	1	0.917214912280702	0	1.10065789473684	0.142857142857143	0.738095238095239	0	tgtggacgctggtgattgtcAttgtggtacccctggttgtc	14	8	1	1	novel		TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	.	GPR141-93	NM_181791	exon1	c.A436T	p.I146F	ATTGTCATTGTGG	.	161	61	199	0	.	0	0	0	0	0	T	37780431	A	T	37780431	3	4	58	1	0	0	0	0	1	0	0	0	6669	217	8	5	438	5	GPR141	7	37780431	Missense_Mutation	SNP	A	TCGA-P6-A5OF-01A-11D-A29I-10	18031869	37780431	121358232	20	11544										
RAMP3	10268	hgsc.bcm.edu	37	chr7	45197433	45197433	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0405405405405405	3	1	0.917214912280702	0	1.10065789473684	0.142857142857143	0.738095238095239	0	tgcggccggccagccatggaGactggagcgctgcggcgccc	17	15	0	1	rs67477213		TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	.	RAMP3-90	NM_005856	exon1	c.G6A	p.E2E	CATGGAGACTGGA	.	9	9	6	0	G|0.760;A|0.240	19	9	10	0	0	A	45197433	G	A	45197433	2	1	58	1	0	0	0	0	0	0	0	1	13058	933	33	3		3	RAMP3	7	45197433	Silent	SNP	G	TCGA-P6-A5OF-01A-11D-A29I-10	7417002	45197433	113941230	21	11545										
CHD7	55636	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr8	61769317	61769317	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0405405405405405	3	1	0.917214912280702	0	1.10065789473684	0.142857142857143	0.738095238095239	0	agcaggcctttcgcgcacacCcacaaggcatctccttaatg	8	15	1	0	novel		TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	.	CHD7-141	NM_017780	exon34	c.C7478G	p.P2493R	GCACACCCACAAG	.	224	125	229	0	.	0	0	0	0	0	G	61769317	C	G	61769317	3	3	58	1	0	0	0	0	1	0	0	0	3336	623	22	3	7608	3	CHD7	8	61769317	Missense_Mutation	SNP	C	TCGA-P6-A5OF-01A-11D-A29I-10		61769317	84594705	22	11546										
TSNARE1	203062	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr8	143427201	143427201	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0405405405405405	3	1	0.917214912280702	0	1.10065789473684	0.142857142857143	0.738095238095239	0	ttctgcagcttgctctctggCgacgggcaggggaaatggcg	16	10	2	0	novel		TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	.	TSNARE1-90	NM_145003	exon3	c.G141T	p.S47S	CTCTGGCGACGGG	.	145	57	147	0	.	12	6	6	0	0	A	143427201	C	A	143427201	2	1	58	1	0	0	0	0	0	0	0	1	16668	755	27	2		2	TSNARE1	8	143427201	Silent	SNP	C	TCGA-P6-A5OF-01A-11D-A29I-10	81657884	143427201	2936821	23	11547										
SCRIB	23513	hgsc.bcm.edu	37	chr8	144874554	144874554	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0405405405405405	3	1	0.917214912280702	0	1.10065789473684	0.142857142857143	0.738095238095239	0	ggggcgccacctcccaggggTgggggggacgccgggctctg	21	13	1	0	rs6991873		TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	.	SCRIB-228	NM_015356	exon32	c.A4350G	p.P1450P	CAGGGGTGGGGGG	.	4	4	0	0	T|0.010;C|0.990	27	0	27	0	0	C	144874554	T	C	144874554	2	2	58	1	0	0	0	0	0	0	0	1	13972	1683	59	4		4	SCRIB	8	144874554	Silent	SNP	T	TCGA-P6-A5OF-01A-11D-A29I-10	1447353	144874554	1489468	24	11548										
SLC24A2	25769	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	19786455	19786455	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0405405405405405	3	1	0.917214912280702	0	1.10065789473684	0.142857142857143	0.738095238095239	0	agatcattccaatgacatgcAgaatgatcgcaccttttctt	6	10	2	4	novel		TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	.	SLC24A2-517	NM_001193288	exon1	c.T410C	p.L137P	ACATGCAGAATGA	.	53	9	55	0	.	0	0	0	0	0	G	19786455	A	G	19786455	3	3	58	1	0	0	0	0	1	0	0	0	14501	188	7	4	1615	4	SLC24A2	9	19786455	Missense_Mutation	SNP	A	TCGA-P6-A5OF-01A-11D-A29I-10		19786455	121426976	25	11549										
CCDC107	203260	bcgsc.ca	37	chr9	35660990	35660990	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0405405405405405	3	1	0.917214912280702	0	1.10065789473684	0.142857142857143	0.738095238095239	0	taaaggaggacgaggaggagAttggtgacagtcaggcctgg	18	5	1	2	rs1339374	byfrequency	TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	.	CCDC107-90	NM_174923	exon5	c.A658G	p.I220V	GAGGAGATTGGTG	.	128	5	138	1	A|0.226;G|0.774	215	215	0	0	0	G	35660990	A	G	35660990	3	3	58	1	0	0	0	0	1	0	0	0	2748	333	12	4	676	4	CCDC107	9	35660990	Missense_Mutation	SNP	A	TCGA-P6-A5OF-01A-11D-A29I-10	15874535	35660990	105552441	26	11550										
BICD2	23299	broad.mit.edu	37	chr9	95526977	95526977	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0405405405405405	3	1	0.917214912280702	0	1.10065789473684	0.142857142857143	0.738095238095239	0	cgcgcagccactccggctgcGcctccatcaccagccgcgcg	11	21	1	0	novel		TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	.	BICD2-226	NM_001003800	exon1	c.C50A	p.A17E	GGCTGCGCCTCCA	.	61	12	37	3	.	20	19	1	0	0	T	95526977	G	T	95526977	3	4	58	1	0	0	0	0	1	0	0	0	1430	1087	38	2	2555	2	BICD2	9	95526977	Missense_Mutation	SNP	G	TCGA-P6-A5OF-01A-11D-A29I-10	59865987	95526977	45686454	27	11551										
MAP3K8	1326	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr10	30740635	30740635	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0405405405405405	3	1	0.917214912280702	0	1.10065789473684	0.142857142857143	0.738095238095239	0	gcctaagtgttcaaatgaccGaagatgtctattttcctaag	8	8	2	2	novel		TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	.	MAP3K8-981	NM_001244134	exon5	c.G835A	p.E279K	ATGACCGAAGATG	.	79	7	95	0	.	2	2	0	0	0	A	30740635	G	A	30740635	3	1	58	1	0	0	0	0	1	0	0	0	9284	1059	37	1	849	1	MAP3K8	10	30740635	Missense_Mutation	SNP	G	TCGA-P6-A5OF-01A-11D-A29I-10		30740635	104794112	28	11552										
ZCCHC24	219654	hgsc.bcm.edu	37	chr10	81205023	81205023	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0405405405405405	3	1	0.917214912280702	0	1.10065789473684	0.142857142857143	0.738095238095239	0	gagcccagctgctcggggcgGcccttgccgaaggccagctc	15	16	0	0	novel		TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	.	ZCCHC24-153	NM_153367	exon1	c.C174T	p.G58G	GGGGCGGCCCTTG	.	18	12	3	0	.	6	6	0	0	0	A	81205023	G	A	81205023	2	1	58	1	0	0	0	0	0	0	0	1	17625	1190	42	3		3	ZCCHC24	10	81205023	Silent	SNP	G	TCGA-P6-A5OF-01A-11D-A29I-10	50464388	81205023	54329724	29	11553										
KRTAP5-3	387266	bcgsc.ca	37	chr11	1628992	1628992	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0405405405405405	3	1	0.917214912280702	0	1.10065789473684	0.142857142857143	0.738095238095239	0	tggcagcaggatgacccacaGcctgaggagcagcagcaggg	16	11	0	2	rs60210378		TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	.	KRTAP5-3-92	NM_001012708	exon1	c.C624T	p.G208G	CCCACAGCCTGAG	.	130	6	212	2	G|0.562;A|0.438	0	0	0	0	0	A	1628992	G	A	1628992	2	1	58	1	0	0	0	0	0	0	0	1	8584	958	34	3		3	KRTAP5-3	11	1628992	Silent	SNP	G	TCGA-P6-A5OF-01A-11D-A29I-10		1628992	133377524	30	11554										
NRXN2	9379	hgsc.bcm.edu	37	chr11	64480641	64480641	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0405405405405405	3	1	0.917214912280702	0	1.10065789473684	0.142857142857143	0.738095238095239	0	agcttcaggttggccaagagGccgcggaagggcggctcgta	17	10	1	1	rs2518907		TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	.	NRXN2-232	NM_138732	exon2	c.C531T	p.G177G	CAAGAGGCCGCGG	.	5	5	0	0	G|0.449;A|0.551	0	0	0	0	0	A	64480641	G	A	64480641	2	1	58	1	0	0	0	0	0	0	0	1	10695	1190	42	3		3	NRXN2	11	64480641	Silent	SNP	G	TCGA-P6-A5OF-01A-11D-A29I-10	62851649	64480641	70525875	31	11555										
MEN1	4221	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	64574681	64574681	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0405405405405405	3	1	0.917214912280702	0	1.10065789473684	0.142857142857143	0.738095238095239	0	gtcccaggtcatagagcagcCagagcagcttctaggagccg	13	12	2	2	novel		TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	.	MEN1-3017	NM_130800	exon5	c.G809A	p.W270X	AGCAGCCAGAGCA	.	23	14	45	0	.	0	0	0	0	0	T	64574681	C	T	64574681	4	4	58	1	0	0	0	0	0	1	0	0	9500	595	21	3	1062	3	MEN1	11	64574681	Nonsense_Mutation	SNP	C	TCGA-P6-A5OF-01A-11D-A29I-10	94040	64574681	70431835	32	11556										
DNAJB13	374407	bcgsc.ca	37	chr11	73681135	73681135	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0405405405405405	3	1	0.917214912280702	0	1.10065789473684	0.142857142857143	0.738095238095239	0	acaccccagaagaagcagatGctgcgccaggcattgctgac	11	13	0	4	rs72982975	byfrequency	TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	.	DNAJB13-90	NM_153614	exon8	c.G927A	p.M309I	GCAGATGCTGCGC	.	57	5	108	0	G|0.758;A|0.242	0	0	0	0	0	A	73681135	G	A	73681135	3	1	58	1	0	0	0	0	1	0	0	0	4629	1319	46	3	957	3	DNAJB13	11	73681135	Missense_Mutation	SNP	G	TCGA-P6-A5OF-01A-11D-A29I-10	9106454	73681135	61325381	33	11557										
PHLDB1	23187	bcgsc.ca	37	chr11	118509668	118509668	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0405405405405405	3	1	0.917214912280702	0	1.10065789473684	0.142857142857143	0.738095238095239	0	cgggctcaggccgtgcaggaAtcagaacgcctggcccggga	16	13	2	1	rs483598	byfrequency	TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	.	PHLDB1-90	NM_001144758	exon11	c.A2595G	p.E865E	GCAGGAATCAGAA	.	127	5	194	0	A|0.454;G|0.546	24	24	0	0	0	G	118509668	A	G	118509668	2	3	58	1	0	0	0	0	0	0	0	1	11880	98	4	4		4	PHLDB1	11	118509668	Silent	SNP	A	TCGA-P6-A5OF-01A-11D-A29I-10	44828533	118509668	16496848	34	11558										
HYLS1	219844	broad.mit.edu;bcgsc.ca	37	chr11	125770031	125770031	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0405405405405405	3	1	0.917214912280702	0	1.10065789473684	0.142857142857143	0.738095238095239	0	gaaccccaatccaaacctcaGcatatatatgtcccaaacaa	3	14	1	0	novel		TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	.	HYLS1-91	NM_001134793	exon3	c.G768A	p.Q256Q	ACCTCAGCATATA	.	103	5	170	0	.	10	10	0	0	0	A	125770031	G	A	125770031	2	1	58	1	0	0	0	0	0	0	0	1	7490	962	34	3		3	HYLS1	11	125770031	Silent	SNP	G	TCGA-P6-A5OF-01A-11D-A29I-10	7260363	125770031	9236485	35	11559										
BHLHE41	79365	broad.mit.edu	37	chr12	26275863	26275863	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0405405405405405	3	1	0.917214912280702	0	1.10065789473684	0.142857142857143	0.738095238095239	0	ggggcggccgcggacccggcGgccgagggagcgccggtgcc	22	15	0	0	novel		TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	.	BHLHE41-226	NM_030762	exon5	c.C585T	p.A195A	CCCGGCGGCCGAG	.	40	4	49	2	.	13	12	1	0	0	A	26275863	G	A	26275863	2	1	58	1	0	0	0	0	0	0	0	1	1425	1103	39	1		1	BHLHE41	12	26275863	Silent	SNP	G	TCGA-P6-A5OF-01A-11D-A29I-10		26275863	107576032	36	11560										
KRT85	3891	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	52757872	52757872	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0405405405405405	3	1	0.917214912280702	0	1.10065789473684	0.142857142857143	0.738095238095239	0	ctcttcatagaggcgcctcaGgaagctagactcctccacca	8	15	3	2	novel		TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	.	KRT85-91	NM_002283	exon4	c.C766T	p.L256L	GCCTCAGGAAGCT	.	157	26	194	0	.	0	0	0	0	0	A	52757872	G	A	52757872	2	1	58	1	0	0	0	0	0	0	0	1	8520	991	35	3		3	KRT85	12	52757872	Silent	SNP	G	TCGA-P6-A5OF-01A-11D-A29I-10	26482009	52757872	81094023	37	11561										
CD63	967	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	56119366	56119366	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0405405405405405	3	1	0.917214912280702	0	1.10065789473684	0.142857142857143	0.738095238095239	0	tacatcacctcgtagccactTctgatactcttcacgaggca	6	14	4	1	novel		TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	.	CD63-90	NM_001257390	exon8	c.A696C	p.R232S	GCCACTTCTGATA	.	113	53	100	1	.	3231	1628	1601	1	1	G	56119366	T	G	56119366	3	3	58	1	0	0	0	0	1	0	0	0	3035	1780	62	5	24	5	CD63	12	56119366	Missense_Mutation	SNP	T	TCGA-P6-A5OF-01A-11D-A29I-10	3361494	56119366	77732529	38	11562										
USP15	9958	broad.mit.edu	37	chr12	62777929	62777929	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0405405405405405	3	1	0.917214912280702	0	1.10065789473684	0.142857142857143	0.738095238095239	0	catagtagatatatttcatgGccttttcaaatcaactttag	5	7	3	1	novel		TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	.	USP15-1084	NM_001252078	exon11	c.G1319T	p.G440V	TTCATGGCCTTTT	.	64	4	85	0	.	20	20	0	0	0	T	62777929	G	T	62777929	3	4	58	1	0	0	0	0	1	0	0	0	17084	1203	42	3	1270	3	USP15	12	62777929	Missense_Mutation	SNP	G	TCGA-P6-A5OF-01A-11D-A29I-10	6658563	62777929	71073966	39	11563										
ARL6IP4	51329	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr12	123465730	123465730	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0405405405405405	3	1	0.917214912280702	0	1.10065789473684	0.142857142857143	0.738095238095239	0	gcgctcgaggagtcgcagccGgtcccggggacgggggtcgg	21	12	0	0	novel		TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	.	ARL6IP4-90	NM_018694	exon2	c.G413T	p.R138L	GCAGCCGGTCCCG	.	154	14	143	0	.	132	122	10	0	0	T	123465730	G	T	123465730	3	4	58	1	0	0	0	0	1	0	0	0	944	1116	39	2	419	2	ARL6IP4	12	123465730	Missense_Mutation	SNP	G	TCGA-P6-A5OF-01A-11D-A29I-10	60687801	123465730	10386165	40	11564										
EP400	57634	hgsc.bcm.edu	37	chr12	132547093	132547094	+	In_Frame_Ins	INS	-	-	CAGCAGCAG													0.0405405405405405	3	1	0.917214912280702	0	1.10065789473684	0.142857142857143	0.738095238095239	0	agcagcagcagcagcaacaaINScagcagcagcagcagcagca					rs10902490	bycluster;by2hit2allele;byhapmap	TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	.	EP400-520	NM_015409	exon47	c.8181_8182insCAGCAGCAG	p.Q2727delinsQQQQ	GCAACAACAGCAG	.	184	40	206	0	.	0	0	0	0	0	CAGCAGCAG	132547094	-	CAGCAGCAG	132547093	7	5	58	1	0	1	1	0	0	0	0	0	5162	40	2	0	8360	0	EP400	12	132547093	In_Frame_Ins	INS	-	TCGA-P6-A5OF-01A-11D-A29I-10	9081363	132547093	1304802	41	11565										
PXMP2	5827	hgsc.bcm.edu	37	chr12	133264332	133264332	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0405405405405405	3	1	0.917214912280702	0	1.10065789473684	0.142857142857143	0.738095238095239	0	ggcgggcgctcgcccagtacCtgctcttcctgcggctctac	12	17	2	0	rs11538534	byfrequency	TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	.	PXMP2-90	NM_018663	exon1	c.C76T	p.L26L	CAGTACCTGCTCT	.	9	5	0	0	C|0.572;T|0.428	5	5	0	0	0	T	133264332	C	T	133264332	2	4	58	1	0	0	0	0	0	0	0	1	12885	680	24	3		3	PXMP2	12	133264332	Silent	SNP	C	TCGA-P6-A5OF-01A-11D-A29I-10	717239	133264332	587563	42	11566										
ING1	3621	hgsc.bcm.edu	37	chr13	111368316	111368316	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0405405405405405	3	1	0.917214912280702	0	1.10065789473684	0.142857142857143	0.738095238095239	0	gacagtttcaggccgcatctCtgctgacccgagggtggggc	15	12	2	1	rs9555726	byfrequency	TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	.	ING1-515	NM_005537	exon1	c.C526T	p.L176L	GCATCTCTGCTGA	.	7	7	2	0	C|0.372;T|0.628	5	2	3	0	0	T	111368316	C	T	111368316	2	4	58	1	0	0	0	0	0	0	0	1	7756	912	32	3		3	ING1	13	111368316	Silent	SNP	C	TCGA-P6-A5OF-01A-11D-A29I-10		111368316	3801562	43	11567										
TDP1	55775	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr14	90450896	90450896	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0405405405405405	3	1	0.917214912280702	0	1.10065789473684	0.142857142857143	0.738095238095239	0	ttatacccacgaattgctgaTggaacccacaaatctggaga	8	10	1	2	novel		TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	.	TDP1-92	NM_018319	exon9	c.T921C	p.D307D	TGCTGATGGAACC	.	44	24	58	0	.	8	2	6	0	0	C	90450896	T	C	90450896	2	2	58	1	0	0	0	0	0	0	0	1	15765	1461	51	4		4	TDP1	14	90450896	Silent	SNP	T	TCGA-P6-A5OF-01A-11D-A29I-10		90450896	16898644	44	11568										
MGA	23269	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr15	42042367	42042367	+	Frame_Shift_Del	DEL	G	G	-													0.0405405405405405	3	1	0.917214912280702	0	1.10065789473684	0.142857142857143	0.738095238095239	0	ccttaaccaggaaatgtgttGgagcttcacaggaatgtaag					novel		TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	.	MGA-522	NM_001164273	exon17	c.6562delG	p.G2188fs	TGTGTTGGAGCTT	.	41	31	76	0	.	0	0	0	0	0	-	42042367	G	-	42042367	7	5	58	1	0	1	0	1	0	0	0	0	9568	1349	47	0	6624	0	MGA	15	42042367	Frame_Shift_Del	DEL	G	TCGA-P6-A5OF-01A-11D-A29I-10		42042367	60489025	45	11569										
MFAP1	4236	bcgsc.ca	37	chr15	44102010	44102010	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0405405405405405	3	1	0.917214912280702	0	1.10065789473684	0.142857142857143	0.738095238095239	0	aacttgtatttgcccttaacAgctttgttggtaatgacttt	7	7	0	1	rs2228368	byfrequency	TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	.	MFAP1-226	NM_005926	exon7	c.T990G	p.A330A	CTTAACAGCTTTG	.	109	5	197	2	T|0.304;G|0.088	21	21	0	0	0	C	44102010	A	C	44102010	2	2	58	1	0	0	0	0	0	0	0	1	9541	175	7	5		5	MFAP1	15	44102010	Silent	SNP	A	TCGA-P6-A5OF-01A-11D-A29I-10	2059643	44102010	58429382	46	11570										
GOLGA6A	342096	bcgsc.ca	37	chr15	74364639	74364639	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0405405405405405	3	1	0.917214912280702	0	1.10065789473684	0.142857142857143	0.738095238095239	0	ctcctcactgtccagatgttGtcctccatctcctgtaggga	8	14	2	1	rs200350318		TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	.	GOLGA6A-44	NM_001038640	exon14	c.C1513G	p.Q505E	GATGTTGTCCTCC	.	32	6	88	1	G|0.999;C|0.001	0	0	0	0	0	C	74364639	G	C	74364639	3	2	58	1	0	0	0	0	1	0	0	0	6577	1386	48	3	588	3	GOLGA6A	15	74364639	Missense_Mutation	SNP	G	TCGA-P6-A5OF-01A-11D-A29I-10	30262629	74364639	28166753	47	11571										
E4F1	1877	broad.mit.edu	37	chr16	2282180	2282180	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0405405405405405	3	1	0.917214912280702	0	1.10065789473684	0.142857142857143	0.738095238095239	0	tgcttctcctaggtggtgggCacatcaaagaggtcatcgtg	13	9	3	1	novel		TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	.	E4F1-187	NM_004424	exon4	c.C424A	p.H142N	GGTGGGCACATCA	.	54	4	42	1	.	2	2	0	0	0	A	2282180	C	A	2282180	3	1	58	1	0	0	0	0	1	0	0	0	4885	710	25	3	438	3	E4F1	16	2282180	Missense_Mutation	SNP	C	TCGA-P6-A5OF-01A-11D-A29I-10		2282180	88072573	48	11572										
NUDT16L1	84309	hgsc.bcm.edu	37	chr16	4744169	4744169	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0405405405405405	3	1	0.917214912280702	0	1.10065789473684	0.142857142857143	0.738095238095239	0	cgtggcgcacctgtacgcgcGgcagctgacgctggagcagc	16	14	0	1	novel		TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	.	NUDT16L1-90	NM_032349	exon2	c.G344T	p.R115L	ACGCGCGGCAGCT	.	29	4	6	0	.	37	37	0	0	0	T	4744169	G	T	4744169	3	4	58	1	0	0	0	0	1	0	0	0	10762	1116	39	2	350	2	NUDT16L1	16	4744169	Missense_Mutation	SNP	G	TCGA-P6-A5OF-01A-11D-A29I-10	2461989	4744169	85610584	49	11573										
USP31	57478	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	23119496	23119496	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0405405405405405	3	1	0.917214912280702	0	1.10065789473684	0.142857142857143	0.738095238095239	0	tactgcagtgcattctttgaCacaatagtctatgcaggtaa	8	8	2	1	novel		TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	.	USP31-663	NM_020718	exon2	c.G642A	p.V214V	CTTTGACACAATA	.	116	52	126	2	.	0	0	0	0	0	T	23119496	C	T	23119496	2	4	58	1	0	0	0	0	0	0	0	1	17100	465	17	3		3	USP31	16	23119496	Silent	SNP	C	TCGA-P6-A5OF-01A-11D-A29I-10	18375327	23119496	67235257	50	11574										
CCL11	6356	broad.mit.edu;ucsc.edu	37	chr17	32614690	32614690	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0405405405405405	3	1	0.917214912280702	0	1.10065789473684	0.142857142857143	0.738095238095239	0	gaagtatctggaccaaaaatCtccaactccaaagccataaa	5	11	2	0	novel		TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	.	CCL11-90	NM_002986	exon3	c.C275A	p.S92Y	AAAAATCTCCAAC	.	47	9	106	2	.	0	0	0	0	0	A	32614690	C	A	32614690	3	1	58	1	0	0	0	0	1	0	0	0	2889	913	32	3	285	3	CCL11	17	32614690	Missense_Mutation	SNP	C	TCGA-P6-A5OF-01A-11D-A29I-10		32614690	48580520	51	11575										
NT5C	30833	hgsc.bcm.edu	37	chr17	73127683	73127683	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0405405405405405	3	1	0.917214912280702	0	1.10065789473684	0.142857142857143	0.738095238095239	0	cgggccaggaagccgcggcgTtgctccagcggcacgtgcgg	18	14	0	0	rs4788867	byfrequency	TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	.	NT5C-90	NM_001252377	exon1	c.A120G	p.Q40Q	GCGGCGTTGCTCC	.	4	4	0	0	T|0.502;C|0.498	4	0	4	0	0	C	73127683	T	C	73127683	2	2	58	1	0	0	0	0	0	0	0	1	10713	1722	60	4		4	NT5C	17	73127683	Silent	SNP	T	TCGA-P6-A5OF-01A-11D-A29I-10	40512993	73127683	8067527	52	11576										
SEC14L1	6397	bcgsc.ca	37	chr17	75190962	75190962	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0405405405405405	3	1	0.917214912280702	0	1.10065789473684	0.142857142857143	0.738095238095239	0	gatgccctcagcagccccagCgcacctgagcccgtggtggg	14	16	1	1	rs674402	byfrequency	TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	.	SEC14L1-92	NM_001204408	exon9	c.C678T	p.S226S	CCCCAGCGCACCT	.	124	5	198	2	C|0.643;T|0.357	43	43	0	0	0	T	75190962	C	T	75190962	2	4	58	1	0	0	0	0	0	0	0	1	14016	767	27	1		1	SEC14L1	17	75190962	Silent	SNP	C	TCGA-P6-A5OF-01A-11D-A29I-10	2063279	75190962	6004248	53	11577										
ASXL3	80816	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr18	31324560	31324560	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0405405405405405	3	1	0.917214912280702	0	1.10065789473684	0.142857142857143	0.738095238095239	0	tcataactttgctgagcaggCacgtggcccagctcctttca	9	13	2	1	novel		TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	.	ASXL3-49	NM_030632	exon12	c.C4748T	p.A1583V	AGCAGGCACGTGG	.	28	23	43	0	.	0	0	0	0	0	T	31324560	C	T	31324560	3	4	58	1	0	0	0	0	1	0	0	0	1069	710	25	3	4794	3	ASXL3	18	31324560	Missense_Mutation	SNP	C	TCGA-P6-A5OF-01A-11D-A29I-10		31324560	46752688	54	11578										
ARID3A	1820	hgsc.bcm.edu	37	chr19	929753	929753	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0405405405405405	3	1	0.917214912280702	0	1.10065789473684	0.142857142857143	0.738095238095239	0	gctgcgggcctgggacacccAgccagccccggcggctctga	15	17	1	1	rs1799595		TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	.	ARID3A-90	NM_005224	exon2	c.A225G	p.P75P	ACACCCAGCCAGC	.	7	7	0	0	A|0.114;G|0.886	1	0	1	0	0	G	929753	A	G	929753	2	3	58	1	0	0	0	0	0	0	0	1	916	175	7	4		4	ARID3A	19	929753	Silent	SNP	A	TCGA-P6-A5OF-01A-11D-A29I-10		929753	58199230	55	11579										
TCF3	6929	hgsc.bcm.edu	37	chr19	1619333	1619333	+	Silent	SNP	G	G	A													0.0405405405405405	3	1	0.917214912280702	0	1.10065789473684	0.142857142857143	0.738095238095239	0	accaggcctgcgtgccgcccGcccagtgacatggggccggt					rs1140828	byfrequency	TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	.	TCF3-721	NM_003200	exon15	c.C1308T	p.G436G	CCGCCCGCCCAGT	.	12	6	0	0	G|0.749;A|0.251	12	12	0	0	0	A	1619333	G	A	1619333	2	1	58	1	0	0	0	0	0	0	0	1	15731	1074	38	1		1	TCF3	19	1619333	Silent	SNP	G	TCGA-P6-A5OF-01A-11D-A29I-10	689580	1619333	57509650	56	11580	130	2								
TCF3	6929	hgsc.bcm.edu	37	chr19	1619339	1619339	+	Silent	SNP	T	T	C													0.0405405405405405	3	1	0.917214912280702	0	1.10065789473684	0.142857142857143	0.738095238095239	0	cctgcgtgccgcccgcccagTgacatggggccggtgaaacc					rs8140	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	.	TCF3-721	NM_003200	exon15	c.A1302G	p.S434S	GCCCAGTGACATG	.	13	7	0	0	T|0.403;C|0.597	14	14	0	0	0	C	1619339	T	C	1619339	2	2	58	1	0	0	0	0	0	0	0	1	15731	1683	59	4		4	TCF3	19	1619339	Silent	SNP	T	TCGA-P6-A5OF-01A-11D-A29I-10	6	1619339	57509644	57	11581	130	2								
C19orf10	56005	hgsc.bcm.edu	37	chr19	4670313	4670313	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0405405405405405	3	1	0.917214912280702	0	1.10065789473684	0.142857142857143	0.738095238095239	0	cgcggcccacaagctcgcgcCgacgccgttccaccctccgc	10	22	0	0	rs2270090	byfrequency	TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	.	C19orf10-90	NM_019107	exon1	c.G34C	p.G12R	TCGCGCCGACGCC	.	15	5	0	0	C|0.752;G|0.248	2	1	1	0	0	G	4670313	C	G	4670313	3	3	58	1	0	0	0	0	1	0	0	0	1914	652	23	2	511	2	C19orf10	19	4670313	Missense_Mutation	SNP	C	TCGA-P6-A5OF-01A-11D-A29I-10	3050974	4670313	54458670	58	11582										
CLPP	8192	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr19	6364521	6364521	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0405405405405405	3	1	0.917214912280702	0	1.10065789473684	0.142857142857143	0.738095238095239	0	atgcagtacatcctcaacccGatctgcacctggtgcgtggg	11	13	2	0	novel		TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	.	CLPP-91	NM_006012	exon4	c.G426A	p.P142P	CAACCCGATCTGC	.	186	12	138	0	.	144	140	4	0	0	A	6364521	G	A	6364521	2	1	58	1	0	0	0	0	0	0	0	1	3558	1045	37	1		1	CLPP	19	6364521	Silent	SNP	G	TCGA-P6-A5OF-01A-11D-A29I-10	1694208	6364521	52764462	59	11583										
MCOLN1	57192	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	7589911	7589911	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0405405405405405	3	1	0.917214912280702	0	1.10065789473684	0.142857142857143	0.738095238095239	0	gcggggccttcaccggccccTccgacacccccagaagagga	12	18	1	2	novel		TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	.	MCOLN1-153	NM_020533	exon2	c.T96A	p.P32P	GGCCCCTCCGACA	.	67	26	71	1	.	79	49	28	2	0	A	7589911	T	A	7589911	2	1	58	1	0	0	0	0	0	0	0	1	9423	1538	54	5		5	MCOLN1	19	7589911	Silent	SNP	T	TCGA-P6-A5OF-01A-11D-A29I-10	1225390	7589911	51539072	60	11584										
MUC16	94025	bcgsc.ca	37	chr19	9075969	9075969	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0405405405405405	3	1	0.917214912280702	0	1.10065789473684	0.142857142857143	0.738095238095239	0	ctgctgatctgggcacctgcCctggatgtgcagaagtggtg	15	10	1	2	rs2591593	byfrequency	TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	.	MUC16-566	NM_024690	exon3	c.G11477A	p.G3826E	ACCTGCCCTGGAT	.	260	8	224	2	C|0.750;T|0.250	0	0	0	0	0	T	9075969	C	T	9075969	3	4	58	1	0	0	0	0	1	0	0	0	10001	623	22	3	32374	3	MUC16	19	9075969	Missense_Mutation	SNP	C	TCGA-P6-A5OF-01A-11D-A29I-10	1486058	9075969	50053014	61	11585										
OCEL1	79629	hgsc.bcm.edu	37	chr19	17337555	17337555	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0405405405405405	3	1	0.917214912280702	0	1.10065789473684	0.142857142857143	0.738095238095239	0	cacgacgccccccgcaggacCcgcccatcagcccggaaacc	9	22	1	0	rs3745163	byfrequency	TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	.	OCEL1-68	NM_024578	exon2	c.C123A	p.T41T	CAGGACCCGCCCA	.	10	7	0	0	C|0.734;A|0.266	30	5	25	0	0	A	17337555	C	A	17337555	2	1	58	1	0	0	0	0	0	0	0	1	10845	610	22	3		3	OCEL1	19	17337555	Silent	SNP	C	TCGA-P6-A5OF-01A-11D-A29I-10	8261586	17337555	41791428	62	11586										
ZNF208	7757	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	22171652	22171652	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0405405405405405	3	1	0.917214912280702	0	1.10065789473684	0.142857142857143	0.738095238095239	0	aaattctgctgtgcagtgtcCaggcattgccactcctccag	9	13	1	0	novel		TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	.	ZNF208-7	NM_007153	exon2	c.G63A	p.L21L	AGTGTCCAGGCAT	.	189	22	154	0	.	28	28	0	0	0	T	22171652	C	T	22171652	2	4	58	1	0	0	0	0	0	0	0	1	17803	581	21	3		3	ZNF208	19	22171652	Silent	SNP	C	TCGA-P6-A5OF-01A-11D-A29I-10	4834097	22171652	36957331	63	11587										
UQCRFS1	7386	hgsc.bcm.edu	37	chr19	29704002	29704002	+	Silent	SNP	T	T	C													0.0405405405405405	3	1	0.917214912280702	0	1.10065789473684	0.142857142857143	0.738095238095239	0	aggacgggcgcgaacgggccTgagcgggatgctaccgacaa					rs11666764	byfrequency	TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	.	UQCRFS1-226	NM_006003	exon1	c.A24G	p.S8S	CGGGCCTGAGCGG	.	7	5	0	0	T|0.072;C|0.928	1	1	0	0	0	C	29704002	T	C	29704002	2	2	58	1	0	0	0	0	0	0	0	1	17059	1567	55	4		4	UQCRFS1	19	29704002	Silent	SNP	T	TCGA-P6-A5OF-01A-11D-A29I-10	7532350	29704002	29424981	64	11588	131	2								
UQCRFS1	7386	hgsc.bcm.edu	37	chr19	29704010	29704010	+	Missense_Mutation	SNP	A	A	C													0.0405405405405405	3	1	0.917214912280702	0	1.10065789473684	0.142857142857143	0.738095238095239	0	cgcgaacgggcctgagcgggAtgctaccgacaacatggcga					rs8100724	byfrequency	TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	.	UQCRFS1-226	NM_006003	exon1	c.T16G	p.S6A	AGCGGGATGCTAC	.	7	5	0	0	A|0.065;C|0.935	1	1	0	0	0	C	29704010	A	C	29704010	3	2	58	1	0	0	0	0	1	0	0	0	17059	333	12	5	816	5	UQCRFS1	19	29704010	Missense_Mutation	SNP	A	TCGA-P6-A5OF-01A-11D-A29I-10	8	29704010	29424973	65	11589	131	2								
PPP5C	5536	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	46857169	46857169	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0405405405405405	3	1	0.917214912280702	0	1.10065789473684	0.142857142857143	0.738095238095239	0	ttgagctggacaagaagtacAtcaagggttattaccgccgg	12	8	1	2	novel		TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	.	PPP5C-227	NM_006247	exon2	c.A286T	p.I96F	AAGTACATCAAGG	.	248	116	259	1	.	92	49	43	0	0	T	46857169	A	T	46857169	3	4	58	1	0	0	0	0	1	0	0	0	12438	217	8	5	292	5	PPP5C	19	46857169	Missense_Mutation	SNP	A	TCGA-P6-A5OF-01A-11D-A29I-10	17153159	46857169	12271814	66	11590										
GLTSCR1	29998	hgsc.bcm.edu	37	chr19	48205288	48205288	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0405405405405405	3	1	0.917214912280702	0	1.10065789473684	0.142857142857143	0.738095238095239	0	gggctcatccgcgagctggcGgccgtggaggacgagctgta	18	11	1	0	rs8100472		TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	.	GLTSCR1-48	NM_015711	exon15	c.G4299A	p.A1433A	GCTGGCGGCCGTG	.	11	5	2	0	G|0.917;A|0.083	0	0	0	0	0	A	48205288	G	A	48205288	2	1	58	1	0	0	0	0	0	0	0	1	6494	1103	39	1		1	GLTSCR1	19	48205288	Silent	SNP	G	TCGA-P6-A5OF-01A-11D-A29I-10	1348119	48205288	10923695	67	11591										
PYGB	5834	bcgsc.ca	37	chr20	25276297	25276297	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0405405405405405	3	1	0.917214912280702	0	1.10065789473684	0.142857142857143	0.738095238095239	0	tgccaggcacaggtggaccaGctgtaccgggtgaggctcct	15	12	0	1	rs1130694	byfrequency	TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	.	PYGB-91	NM_002862	exon19	c.G2370A	p.Q790Q	GGACCAGCTGTAC	.	301	9	269	1	G|0.542;A|0.458	0	0	0	0	0	A	25276297	G	A	25276297	2	1	58	1	0	0	0	0	0	0	0	1	12895	962	34	3		3	PYGB	20	25276297	Silent	SNP	G	TCGA-P6-A5OF-01A-11D-A29I-10		25276297	37749223	68	11592										
LIME1	54923	bcgsc.ca	37	chr20	62368925	62368925	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0405405405405405	3	1	0.917214912280702	0	1.10065789473684	0.142857142857143	0.738095238095239	0	ggggctgccagtgtcctgggCccctcctgccctctgggttc	14	16	1	0	novel		TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	.	LIME1-44	NM_017806	exon2	c.C23T	p.A8V	CCTGGGCCCCTCC	.	200	175	172	3	.	16	0	16	0	0	T	62368925	C	T	62368925	3	4	58	1	0	0	0	0	1	0	0	0	8823	739	26	3	25	3	LIME1	20	62368925	Missense_Mutation	SNP	C	TCGA-P6-A5OF-01A-11D-A29I-10	37092628	62368925	656595	69	11593										
COL18A1	80781	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr21	46932128	46932128	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0405405405405405	3	1	0.917214912280702	0	1.10065789473684	0.142857142857143	0.738095238095239	0	gaagagcgtgtggcatggctCggaccccaacgggcgcaggc	17	12	0	1	novel		TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	.	COL18A1-90	NM_030582	exon42	c.C4367T	p.S1456L	ATGGCTCGGACCC	.	565	47	448	0	.	287	278	9	0	0	T	46932128	C	T	46932128	3	4	58	1	0	0	0	0	1	0	0	0	3681	893	31	1	5352	1	COL18A1	21	46932128	Missense_Mutation	SNP	C	TCGA-P6-A5OF-01A-11D-A29I-10		46932128	1197767	70	11594										
ZNRF3	84133	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr22	29444479	29444480	+	Splice_Site	DNP	GG	GG	TT													0.0405405405405405	3	1	0.917214912280702	0	1.10065789473684	0.142857142857143	0.738095238095239	0	actgtcggcacaacatcataGgtaactgtcacccgccttag					novel		TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10	GG	GG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	.	ZNRF3-69	NM_001206998	exon7	c.1015+1G>T	.	TCATAGGTAACTG	.	112	40	217	0	.	0	0	0	0	0	TT	29444480	GG	TT	29444479	5	4	58	1	0	0	0	0	0	0	1	0	18250	1014	35	3	737	3	ZNRF3	22	29444479	Splice_Site	DNP	GG	TCGA-P6-A5OF-01A-11D-A29I-10		29444479	21860087	71	11595										
TNRC6B	23112	broad.mit.edu;bcgsc.ca	37	chr22	40657974	40657974	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0405405405405405	3	1	0.917214912280702	0	1.10065789473684	0.142857142857143	0.738095238095239	0	acaaccgccaagcgccgcccGctacatgcctcgggaggtgc	12	17	0	0	novel		TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	.	TNRC6B-22	NM_001024843	exon7	c.G362A	p.R121H	CCGCCCGCTACAT	.	217	9	371	1	.	1	1	0	0	0	A	40657974	G	A	40657974	3	1	58	1	0	0	0	0	1	0	0	0	16378	1087	38	1	389	1	TNRC6B	22	40657974	Missense_Mutation	SNP	G	TCGA-P6-A5OF-01A-11D-A29I-10	11213495	40657974	10646592	72	11596										
TBL1X	6907	broad.mit.edu;bcgsc.ca	37	chrX	9656265	9656265	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0405405405405405	3	1	0.917214912280702	0	1.10065789473684	0.142857142857143	0.738095238095239	0	ttcccaccaaaatccatcgaAgaacagagaggccacggtga	9	12	0	3	novel		TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	.	TBL1X-131	NM_001139466	exon7	c.A566G	p.K189R	CATCGAAGAACAG	.	281	8	374	1	.	2	2	0	0	0	G	9656265	A	G	9656265	3	3	58	1	0	0	0	0	1	0	0	0	15676	72	3	4	580	4	TBL1X	23	9656265	Missense_Mutation	SNP	A	TCGA-P6-A5OF-01A-11D-A29I-10		9656265	145614295	73	11597										
TCEAL6	158931	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	101395946	101395946	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0405405405405405	3	1	0.917214912280702	0	1.10065789473684	0.142857142857143	0.738095238095239	0	ctgagagtccttgggggaatCgtccgtccccctgtctgttt	12	12	1	1	novel		TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	.	TCEAL6-91	NM_001006938	exon3	c.G358A	p.D120N	GGGAATCGTCCGT	.	170	39	307	0	.	94	94	0	0	0	T	101395946	C	T	101395946	3	4	58	1	0	0	0	0	1	0	0	0	15712	884	31	1	197	1	TCEAL6	23	101395946	Missense_Mutation	SNP	C	TCGA-P6-A5OF-01A-11D-A29I-10	91739681	101395946	53874614	74	11598										
TCEAL3	85012	broad.mit.edu	37	chrX	102864350	102864350	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0405405405405405	3	1	0.917214912280702	0	1.10065789473684	0.142857142857143	0.738095238095239	0	aaacggacagggggacggacGattcccccaaggactctcag	13	12	1	0	novel		TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	.	TCEAL3-90	NM_001006933	exon3	c.G358A	p.D120N	ACGGACGATTCCC	.	292	10	476	0	.	94	94	0	0	0	A	102864350	G	A	102864350	3	1	58	1	0	0	0	0	1	0	0	0	15709	1058	37	1	360	1	TCEAL3	23	102864350	Missense_Mutation	SNP	G	TCGA-P6-A5OF-01A-11D-A29I-10	1468404	102864350	52406210	75	11599										
IRS4	8471	broad.mit.edu;bcgsc.ca;mdanderson.org	37	chrX	107979158	107979158	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0405405405405405	3	1	0.917214912280702	0	1.10065789473684	0.142857142857143	0.738095238095239	0	cgccgcggtggaatgagcggGgggatcgcggcgccagaggc	21	11	0	2	novel		TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	.	IRS4-623	NM_003604	exon1	c.C417A	p.P139P	GAGCGGGGGGATC	.	47	17	99	0	.	0	0	0	0	0	T	107979158	G	T	107979158	2	4	58	1	0	0	0	0	0	0	0	1	7863	1219	43	3		3	IRS4	23	107979158	Silent	SNP	G	TCGA-P6-A5OF-01A-11D-A29I-10	5114808	107979158	47291402	76	11600										
NDUFA1	4694	broad.mit.edu	37	chrX	119007288	119007288	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0405405405405405	3	1	0.917214912280702	0	1.10065789473684	0.142857142857143	0.738095238095239	0	aaaaaagggttgctcattttGggtatcactggagtctgatg	12	5	3	1	novel		TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	.	NDUFA1-193	NM_004541	exon2	c.G124T	p.G42W	CATTTTGGGTATC	.	99	4	170	0	.	627	627	0	0	0	T	119007288	G	T	119007288	3	4	58	1	0	0	0	0	1	0	0	0	10288	1348	47	3	130	3	NDUFA1	23	119007288	Missense_Mutation	SNP	G	TCGA-P6-A5OF-01A-11D-A29I-10	11028130	119007288	36263272	77	11601										
MAGEA3	4102	bcgsc.ca	37	chrX	151935712	151935712	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0405405405405405	3	1	0.917214912280702	0	1.10065789473684	0.142857142857143	0.738095238095239	0	gcaaggaactggaagctttgCtgaagatcacaggaaagaaa	12	6	1	3	rs61744011	byfrequency	TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	.	MAGEA3-90	NM_005362	exon3	c.G455T	p.S152I	GCTTTGCTGAAGA	.	378	28	674	17	C|0.995;A|0.005	0	0	0	0	0	A	151935712	C	A	151935712	3	1	58	1	0	0	0	0	1	0	0	0	9195	797	28	3	493	3	MAGEA3	23	151935712	Missense_Mutation	SNP	C	TCGA-P6-A5OF-01A-11D-A29I-10	32928424	151935712	3334848	78	11602										
ARHGEF16	27237	ucsc.edu;bcgsc.ca	37	chr1	3395174	3395174	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0676691729323308	18	0.539713201460978	1.36467627545184	2.46691480562448	0.72067174096895	0.139785384641228	0.738095238095239	0	ctcctgctctcctcggactcCgcgtaagtgggctcccggga	12	16	1	0	rs61734742	byfrequency	TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	ARHGEF16-228	NM_014448	exon12	c.C1812A	p.S604S	GGACTCCGCGTAA	.	64	7	72	0	C|0.938;A|0.062	0	0	0	0	0	A	3395174	C	A	3395174	2	1	59	1	0	0	0	0	0	0	0	1	899	639	23	2		2	ARHGEF16	1	3395174	Silent	SNP	C	TCGA-P6-A5OH-01A-11D-A30A-10		3395174	245855447	1	11603										
PEX14	5195	bcgsc.ca	37	chr1	10596341	10596341	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0676691729323308	18	0.539713201460978	1.36467627545184	2.46691480562448	0.72067174096895	0.139785384641228	0.738095238095239	0	cttgcaaccaggagagcattCctaaagaagaaaggtacagg	11	8	0	3	rs12375	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	PEX14-90	NM_004565	exon3	c.C156T	p.F52F	AGCATTCCTAAAG	.	172	8	273	0	C|0.770;T|0.230	0	0	0	0	0	T	10596341	C	T	10596341	2	4	59	1	0	0	0	0	0	0	0	1	11771	854	30	3		3	PEX14	1	10596341	Silent	SNP	C	TCGA-P6-A5OH-01A-11D-A30A-10	7201167	10596341	238654280	2	11604										
MTHFR	4524	bcgsc.ca	37	chr1	11850927	11850927	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0676691729323308	18	0.539713201460978	1.36467627545184	2.46691480562448	0.72067174096895	0.139785384641228	0.738095238095239	0	cctcatacagctttccccacCgctcaatccacagggcaaag	6	17	2	0	rs2274976	byfrequency	TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	MTHFR-90	NM_005957	exon12	c.G1781A	p.R594Q	CCCCACCGCTCAA	.	260	9	199	3	C|0.949;T|0.051	0	0	0	0	0	T	11850927	C	T	11850927	3	4	59	1	0	0	0	0	1	0	0	0	9959	652	23	1	193	1	MTHFR	1	11850927	Missense_Mutation	SNP	C	TCGA-P6-A5OH-01A-11D-A30A-10	1254586	11850927	237399694	3	11605										
HNRNPCL1	343069	ucsc.edu;bcgsc.ca	37	chr1	12907358	12907358	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0676691729323308	18	0.539713201460978	1.36467627545184	2.46691480562448	0.72067174096895	0.139785384641228	0.738095238095239	0	actccagctggtcatcccccTgatcttcattaacatcatca	4	15	5	1	rs74587302		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	HNRNPCL1-68	NM_001013631	exon2	c.A785G	p.Q262R	TCCCCCTGATCTT	.	59	10	88	0	.	0	0	0	0	0	C	12907358	T	C	12907358	3	2	59	1	0	0	0	0	1	0	0	0	7284	1580	55	4	98	4	HNRNPCL1	1	12907358	Missense_Mutation	SNP	T	TCGA-P6-A5OH-01A-11D-A30A-10	1056431	12907358	236343263	4	11606										
AGMAT	79814	ucsc.edu;bcgsc.ca	37	chr1	15909850	15909850	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0676691729323308	18	0.539713201460978	1.36467627545184	2.46691480562448	0.72067174096895	0.139785384641228	0.738095238095239	0	cgtgctaggattgactgtccCaagcatcactgattcttccc	8	13	2	2	rs6429757	byfrequency	TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	AGMAT-91	NM_024758	exon2	c.G313C	p.G105R	CTGTCCCAAGCAT	.	70	7	74	0	C|0.348;G|0.652	0	0	0	0	0	G	15909850	C	G	15909850	3	3	59	1	0	0	0	0	1	0	0	0	385	594	21	3	769	3	AGMAT	1	15909850	Missense_Mutation	SNP	C	TCGA-P6-A5OH-01A-11D-A30A-10	3002492	15909850	233340771	5	11607										
WASF2	10163	broad.mit.edu;bcgsc.ca	37	chr1	27736665	27736665	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0676691729323308	18	0.539713201460978	1.36467627545184	2.46691480562448	0.72067174096895	0.139785384641228	0.738095238095239	0	cactggatcttttgggtccaGccaaaccagatcctctttgg	9	12	2	1	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	WASF2-228	NM_006990	exon8	c.C860T	p.A287V	GGTCCAGCCAAAC	.	105	25	68	1	.	0	0	0	0	0	A	27736665	G	A	27736665	3	1	59	1	0	0	0	0	1	0	0	0	17291	971	34	3	644	3	WASF2	1	27736665	Missense_Mutation	SNP	G	TCGA-P6-A5OH-01A-11D-A30A-10	11826815	27736665	221513956	6	11608										
OPRD1	4985	hgsc.bcm.edu	37	chr1	29138975	29138975	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0676691729323308	18	0.539713201460978	1.36467627545184	2.46691480562448	0.72067174096895	0.139785384641228	0.738095238095239	0	ggacgcctaccctagcgcctGccccagcgctggcgccaatg	12	18	0	0	rs1042114	byfrequency	TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	OPRD1-69	NM_000911	exon1	c.G80T	p.C27F	GCGCCTGCCCCAG	.	16	16	0	0	G|0.061;T|0.939	0	0	0	0	0	T	29138975	G	T	29138975	3	4	59	1	0	0	0	0	1	0	0	0	10913	1319	46	3	82	3	OPRD1	1	29138975	Missense_Mutation	SNP	G	TCGA-P6-A5OH-01A-11D-A30A-10	1402310	29138975	220111646	7	11609										
MACF1	23499	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	39920766	39920766	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0676691729323308	18	0.539713201460978	1.36467627545184	2.46691480562448	0.72067174096895	0.139785384641228	0.738095238095239	0	aaagcccttatcgctgagcaTcaggtatcttaacctcactg	7	12	3	1	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	MACF1-165	NM_012090	exon86	c.T14895A	p.H4965Q	TGAGCATCAGGTA	.	115	8	110	0	.	0	0	0	0	0	A	39920766	T	A	39920766	3	1	59	1	0	0	0	0	1	0	0	0	9172	1432	50	5	21384	5	MACF1	1	39920766	Missense_Mutation	SNP	T	TCGA-P6-A5OH-01A-11D-A30A-10	10781791	39920766	209329855	8	11610										
KDM4A	9682	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	44134891	44134891	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0676691729323308	18	0.539713201460978	1.36467627545184	2.46691480562448	0.72067174096895	0.139785384641228	0.738095238095239	0	tctgagcagtatgagatgacGgagtgcccggcagccctcgc	14	12	1	3	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	KDM4A-227	NM_014663	exon10	c.G1284A	p.T428T	GATGACGGAGTGC	.	305	65	210	1	.	0	0	0	0	0	A	44134891	G	A	44134891	2	1	59	1	0	0	0	0	0	0	0	1	8149	1103	39	1		1	KDM4A	1	44134891	Silent	SNP	G	TCGA-P6-A5OH-01A-11D-A30A-10	4214125	44134891	205115730	9	11611										
FOXD2	2306	hgsc.bcm.edu	37	chr1	47904909	47904909	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0676691729323308	18	0.539713201460978	1.36467627545184	2.46691480562448	0.72067174096895	0.139785384641228	0.738095238095239	0	gctgcgccaaagccttctacGcggcgtccctgagtcctccc	10	18	1	1	rs2405913		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	FOXD2-226	NM_004474	exon1	c.G1102C	p.A368P	TTCTACGCGGCGT	.	4	4	0	0	G|0.835;C|0.165	0	0	0	0	0	C	47904909	G	C	47904909	3	2	59	1	0	0	0	0	1	0	0	0	6016	1087	38	2	1104	2	FOXD2	1	47904909	Missense_Mutation	SNP	G	TCGA-P6-A5OH-01A-11D-A30A-10	3770018	47904909	201345712	10	11612										
NFIA	4774	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	61554105	61554106	+	Missense_Mutation	DNP	TC	TC	AT													0.0676691729323308	18	0.539713201460978	1.36467627545184	2.46691480562448	0.72067174096895	0.139785384641228	0.738095238095239	0	aaaaaacctccatgttgtgtTctttccaacccagaccagaa					novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	TC	TC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	NFIA-92	NM_001145512	exon3	c.C448T	p.L150F	TGTGTTCTTTCCA	.	143	0	198	0	.	0	0	0	0	0	AT	61554106	TC	AT	61554105	3	1	59	1	0	0	0	0	1	0	0	0	10399	1770	62	5	464	5	NFIA	1	61554105	Missense_Mutation	DNP	TC	TCGA-P6-A5OH-01A-11D-A30A-10	13649196	61554105	187696516	11	11613										
ADAMTSL4	54507	bcgsc.ca	37	chr1	150526044	150526044	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0676691729323308	18	0.539713201460978	1.36467627545184	2.46691480562448	0.72067174096895	0.139785384641228	0.738095238095239	0	tctcttctagaggggaagagGctattccgtcccctactcca	9	13	2	2	rs41317515	byfrequency	TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	ADAMTSL4-92	NM_019032	exon6	c.G577C	p.A193P	GAAGAGGCTATTC	.	186	8	123	0	G|0.456;C|0.544	0	0	0	0	0	C	150526044	G	C	150526044	3	2	59	1	0	0	0	0	1	0	0	0	277	1203	42	3	591	3	ADAMTSL4	1	150526044	Missense_Mutation	SNP	G	TCGA-P6-A5OH-01A-11D-A30A-10	88971939	150526044	98724577	12	11614										
FLG	2312	bcgsc.ca	37	chr1	152280782	152280782	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0676691729323308	18	0.539713201460978	1.36467627545184	2.46691480562448	0.72067174096895	0.139785384641228	0.738095238095239	0	tcctgattgttccttgtcatAtgtttttctgcttgcacttc	6	10	2	1	rs2184953	byfrequency	TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	FLG-106	NM_002016	exon3	c.T6580C	p.Y2194H	TGTCATATGTTTT	.	241	9	219	2	A|0.532;G|0.468	0	0	0	0	0	G	152280782	A	G	152280782	3	3	59	1	0	0	0	0	1	0	0	0	5941	449	16	4	5609	4	FLG	1	152280782	Missense_Mutation	SNP	A	TCGA-P6-A5OH-01A-11D-A30A-10	1754738	152280782	96969839	13	11615										
LOR	4014	hgsc.bcm.edu	37	chr1	153233701	153233701	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0676691729323308	18	0.539713201460978	1.36467627545184	2.46691480562448	0.72067174096895	0.139785384641228	0.738095238095239	0	gggagcgtcaagtactccggAggcggcggctcctccggcgg	18	13	1	0	rs1143390	bycluster;byfrequency;by1000genomes	TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	LOR-90	NM_000427	exon2	c.A276C	p.G92G	CTCCGGAGGCGGC	.	5	5	0	0	A|0.594;C|0.406	0	0	0	0	0	C	153233701	A	C	153233701	2	2	59	1	0	0	0	0	0	0	0	1	8924	291	11	5		5	LOR	1	153233701	Silent	SNP	A	TCGA-P6-A5OH-01A-11D-A30A-10	952919	153233701	96016920	14	11616										
GATAD2B	57459	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	153800736	153800736	+	Nonsense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0676691729323308	18	0.539713201460978	1.36467627545184	2.46691480562448	0.72067174096895	0.139785384641228	0.738095238095239	0	cccctccattttgagtcgctTtgccaggacatcatctcgct	7	15	2	1	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	GATAD2B-90	NM_020699	exon2	c.A88T	p.K30X	GTCGCTTTGCCAG	.	51	17	25	0	.	0	0	0	0	0	A	153800736	T	A	153800736	4	1	59	1	0	0	0	0	0	1	0	0	6281	1850	64	5	1733	5	GATAD2B	1	153800736	Nonsense_Mutation	SNP	T	TCGA-P6-A5OH-01A-11D-A30A-10	567035	153800736	95449885	15	11617										
NUP210L	91181	hgsc.bcm.edu	37	chr1	154067601	154067601	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0676691729323308	18	0.539713201460978	1.36467627545184	2.46691480562448	0.72067174096895	0.139785384641228	0.738095238095239	0	tttccttcacagactgccatGtcaccaatgccacttccaca	4	16	2	1	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	NUP210L-77	NM_001159484	exon15	c.C1997A	p.T666K	TGCCATGTCACCA	.	56	4	36	0	.	0	0	0	0	0	T	154067601	G	T	154067601	3	4	59	1	0	0	0	0	1	0	0	0	10790	1377	48	3	3773	3	NUP210L	1	154067601	Missense_Mutation	SNP	G	TCGA-P6-A5OH-01A-11D-A30A-10	266865	154067601	95183020	16	11618										
CADM3	57863	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	159170626	159170626	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0676691729323308	18	0.539713201460978	1.36467627545184	2.46691480562448	0.72067174096895	0.139785384641228	0.738095238095239	0	cacatgaggcaaaaggctccGacgatgctccagacgcggac	12	13	0	2	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	CADM3-92	NM_021189	exon10	c.G1213A	p.D405N	GGCTCCGACGATG	.	392	114	343	0	.	0	0	0	0	0	A	159170626	G	A	159170626	3	1	59	1	0	0	0	0	1	0	0	0	2574	1058	37	1	1251	1	CADM3	1	159170626	Missense_Mutation	SNP	G	TCGA-P6-A5OH-01A-11D-A30A-10	5103025	159170626	90079995	17	11619										
DUSP27	92235	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	167095939	167095939	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0676691729323308	18	0.539713201460978	1.36467627545184	2.46691480562448	0.72067174096895	0.139785384641228	0.738095238095239	0	ggatgatgaggacagcgtggGctctgaggccagttccttct	15	9	2	3	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	DUSP27-71	NM_001080426	exon5	c.G1571C	p.G524A	GCGTGGGCTCTGA	.	477	28	397	0	.	0	0	0	0	0	C	167095939	G	C	167095939	3	2	59	1	0	0	0	0	1	0	0	0	4835	1203	42	3	1589	3	DUSP27	1	167095939	Missense_Mutation	SNP	G	TCGA-P6-A5OH-01A-11D-A30A-10	7925313	167095939	82154682	18	11620										
TNR	7143	broad.mit.edu	37	chr1	175375841	175375841	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0676691729323308	18	0.539713201460978	1.36467627545184	2.46691480562448	0.72067174096895	0.139785384641228	0.738095238095239	0	cagaaccactgtttccccatCtgcccccatcctctcagcca	4	20	2	1	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	TNR-324	NM_003285	exon3	c.G10C	p.D4H	CCCCATCTGCCCC	.	113	4	100	0	.	0	0	0	0	0	G	175375841	C	G	175375841	3	3	59	1	0	0	0	0	1	0	0	0	16375	913	32	3	4150	3	TNR	1	175375841	Missense_Mutation	SNP	C	TCGA-P6-A5OH-01A-11D-A30A-10	8279902	175375841	73874780	19	11621										
IER5	51278	hgsc.bcm.edu	37	chr1	181058313	181058313	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0676691729323308	18	0.539713201460978	1.36467627545184	2.46691480562448	0.72067174096895	0.139785384641228	0.738095238095239	0	gccgcccccgcccgccgctcGtgcctcttggccggagaccg	13	21	1	1	rs3747955		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	IER5-227	NM_016545	exon1	c.G275A	p.R92H	CCGCTCGTGCCTC	.	20	20	0	0	G|0.568;A|0.432	0	0	0	0	0	A	181058313	G	A	181058313	3	1	59	1	0	0	0	0	1	0	0	0	7529	1145	40	1	277	1	IER5	1	181058313	Missense_Mutation	SNP	G	TCGA-P6-A5OH-01A-11D-A30A-10	5682472	181058313	68192308	20	11622										
SLC26A9	115019	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	205890762	205890762	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0676691729323308	18	0.539713201460978	1.36467627545184	2.46691480562448	0.72067174096895	0.139785384641228	0.738095238095239	0	catgtccaggatgagggtgtGgaaggtgacgaagggtggga	20	4	0	2	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	SLC26A9-92	NM_052934	exon17	c.C1987A	p.H663N	GGGTGTGGAAGGT	.	85	26	62	0	.	0	0	0	0	0	T	205890762	G	T	205890762	3	4	59	1	0	0	0	0	1	0	0	0	14559	1348	47	3	704	3	SLC26A9	1	205890762	Missense_Mutation	SNP	G	TCGA-P6-A5OH-01A-11D-A30A-10	24832449	205890762	43359859	21	11623										
KCTD3	51133	hgsc.bcm.edu	37	chr1	215741053	215741053	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0676691729323308	18	0.539713201460978	1.36467627545184	2.46691480562448	0.72067174096895	0.139785384641228	0.738095238095239	0	cgggagggcactgcggcagcTtccccgcggcggcggccggc	19	16	0	0	rs2275768	byfrequency	TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	KCTD3-93	NM_016121	exon1	c.T25G	p.F9V	GGCAGCTTCCCCG	.	57	14	2	0	T|0.721;G|0.279	0	0	0	0	0	G	215741053	T	G	215741053	3	3	59	1	0	0	0	0	1	0	0	0	8131	1609	56	5	27	5	KCTD3	1	215741053	Missense_Mutation	SNP	T	TCGA-P6-A5OH-01A-11D-A30A-10	9850291	215741053	33509568	22	11624										
TGFB2	7042	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	218609421	218609421	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0676691729323308	18	0.539713201460978	1.36467627545184	2.46691480562448	0.72067174096895	0.139785384641228	0.738095238095239	0	ctgctaatgttattgccctcCtacagacttgagtcacaaca	6	12	1	2	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	TGFB2-710	NM_001135599	exon6	c.C948G	p.S316S	GCCCTCCTACAGA	.	291	36	317	0	.	0	0	0	0	0	G	218609421	C	G	218609421	2	3	59	1	0	0	0	0	0	0	0	1	15855	668	24	3		3	TGFB2	1	218609421	Silent	SNP	C	TCGA-P6-A5OH-01A-11D-A30A-10	2868368	218609421	30641200	23	11625										
LBR	3930	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	225600179	225600179	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0676691729323308	18	0.539713201460978	1.36467627545184	2.46691480562448	0.72067174096895	0.139785384641228	0.738095238095239	0	agctggcaggcgacaggtcaTtccggggcgctttcaaagag	15	10	2	1	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	LBR-228	NM_194442	exon8	c.A1061G	p.N354S	AGGTCATTCCGGG	.	289	53	280	1	.	0	0	0	0	0	C	225600179	T	C	225600179	3	2	59	1	0	0	0	0	1	0	0	0	8674	1493	52	4	814	4	LBR	1	225600179	Missense_Mutation	SNP	T	TCGA-P6-A5OH-01A-11D-A30A-10	6990758	225600179	23650442	24	11626										
GJC2	57165	hgsc.bcm.edu	37	chr1	228346053	228346053	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0676691729323308	18	0.539713201460978	1.36467627545184	2.46691480562448	0.72067174096895	0.139785384641228	0.738095238095239	0	ccgggcccgaccgggcaacaCgatgggcggaggcgcatcca	16	15	0	0	rs116557768		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	GJC2-68	NM_020435	exon2	c.C594T	p.H198H	GCAACACGATGGG	.	73	49	1	0	C|0.986;T|0.014	0	0	0	0	0	T	228346053	C	T	228346053	2	4	59	1	0	0	0	0	0	0	0	1	6435	535	19	1		1	GJC2	1	228346053	Silent	SNP	C	TCGA-P6-A5OH-01A-11D-A30A-10	2745874	228346053	20904568	25	11627										
PLEKHH2	130271	broad.mit.edu	37	chr2	43953487	43953487	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0676691729323308	18	0.539713201460978	1.36467627545184	2.46691480562448	0.72067174096895	0.139785384641228	0.738095238095239	0	ttgtgattcagatgaagattAtgaagccagtggacgaagtc	12	5	1	5	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	PLEKHH2-92	NM_172069	exon17	c.A2618C	p.Y873S	AAGATTATGAAGC	.	314	7	230	0	.	0	0	0	0	0	C	43953487	A	C	43953487	3	2	59	1	0	0	0	0	1	0	0	0	12106	449	16	5	2680	5	PLEKHH2	2	43953487	Missense_Mutation	SNP	A	TCGA-P6-A5OH-01A-11D-A30A-10		43953487	199245886	26	11628										
PROKR1	10887	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr2	68873425	68873425	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0676691729323308	18	0.539713201460978	1.36467627545184	2.46691480562448	0.72067174096895	0.139785384641228	0.738095238095239	0	ccaccaatgccctgctggccAtcgccattgacaggtgagtg	11	14	0	2	rs147256235		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	PROKR1-523	NM_138964	exon1	c.A472G	p.I158V	CTGGCCATCGCCA	.	150	32	100	0	A|1.000;G|0.000	0	0	0	0	0	G	68873425	A	G	68873425	3	3	59	1	0	0	0	0	1	0	0	0	12584	217	8	4	474	4	PROKR1	2	68873425	Missense_Mutation	SNP	A	TCGA-P6-A5OH-01A-11D-A30A-10	24919938	68873425	174325948	27	11629										
HK2	3099	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	75115104	75115104	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0676691729323308	18	0.539713201460978	1.36467627545184	2.46691480562448	0.72067174096895	0.139785384641228	0.738095238095239	0	catcgatttcaccaagcgtgGactactcttccgaggccgca	9	14	2	0	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	HK2-252	NM_000189	exon16	c.G2294T	p.G765V	AGCGTGGACTACT	.	275	39	188	0	.	0	0	0	0	0	T	75115104	G	T	75115104	3	4	59	1	0	0	0	0	1	0	0	0	7212	1174	41	3	2356	3	HK2	2	75115104	Missense_Mutation	SNP	G	TCGA-P6-A5OH-01A-11D-A30A-10	6241679	75115104	168084269	28	11630										
TGOLN2	10618	broad.mit.edu;bcgsc.ca	37	chr2	85553698	85553700	+	In_Frame_Del	DEL	AAG	AAG	-													0.0676691729323308	18	0.539713201460978	1.36467627545184	2.46691480562448	0.72067174096895	0.139785384641228	0.738095238095239	0	ctgcagtcaccagatatgcaAagaagtggctgctctccgcg					novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	TGOLN2-22	NM_001206841	exon2	c.1155_1157del	p.385_386del	TATGCAAAGAAGT	.	292	42	168	0	.	0	0	0	0	0	-	85553700	AAG	-	85553698	7	5	59	1	0	1	0	1	0	0	0	0	15873	14	1	0	168	0	TGOLN2	2	85553698	In_Frame_Del	DEL	AAG	TCGA-P6-A5OH-01A-11D-A30A-10	10438594	85553698	157645675	29	11631										
AFF3	3899	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	100167958	100167958	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0676691729323308	18	0.539713201460978	1.36467627545184	2.46691480562448	0.72067174096895	0.139785384641228	0.738095238095239	0	atgacaggtgggcgctgttcCgcagccagtgcaggccctgt	15	12	0	1	rs150108936		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	AFF3-230	NM_001025108	exon24	c.G3734A	p.R1245Q	CTGTTCCGCAGCC	.	90	26	49	0	C|1.000;T|0.000	0	0	0	0	0	T	100167958	C	T	100167958	3	4	59	1	0	0	0	0	1	0	0	0	358	652	23	1	25	1	AFF3	2	100167958	Missense_Mutation	SNP	C	TCGA-P6-A5OH-01A-11D-A30A-10	14614260	100167958	143031415	30	11632										
POU3F3	5455	bcgsc.ca	37	chr2	105473180	105473180	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0676691729323308	18	0.539713201460978	1.36467627545184	2.46691480562448	0.72067174096895	0.139785384641228	0.738095238095239	0	gacaagatcgcggcgcagggCcgcaagcgcaagaagcggac	16	12	0	2	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	POU3F3-45	NM_006236	exon1	c.C1212A	p.G404G	GCAGGGCCGCAAG	.	634	30	350	3	.	0	0	0	0	0	A	105473180	C	A	105473180	2	1	59	1	0	0	0	0	0	0	0	1	12305	726	26	3		3	POU3F3	2	105473180	Silent	SNP	C	TCGA-P6-A5OH-01A-11D-A30A-10	5305222	105473180	137726193	31	11633										
C2orf40	84417	hgsc.bcm.edu	37	chr2	106682235	106682235	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0676691729323308	18	0.539713201460978	1.36467627545184	2.46691480562448	0.72067174096895	0.139785384641228	0.738095238095239	0	gccgccatggctgcctccccCgcgcggcctgctgtcctggc	13	20	0	0	rs4266035		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	C2orf40-90	NM_032411	exon1	c.C15G	p.P5P	CTCCCCCGCGCGG	.	16	16	0	0	C|0.795;G|0.205	0	0	0	0	0	G	106682235	C	G	106682235	2	3	59	1	0	0	0	0	0	0	0	1	2171	639	23	2		2	C2orf40	2	106682235	Silent	SNP	C	TCGA-P6-A5OH-01A-11D-A30A-10	1209055	106682235	136517138	32	11634										
IKZF2	22807	broad.mit.edu	37	chr2	213872285	213872285	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0676691729323308	18	0.539713201460978	1.36467627545184	2.46691480562448	0.72067174096895	0.139785384641228	0.738095238095239	0	tgttctccttctccattgaaGaccttgtagatgtccttcag	7	11	3	3	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	IKZF2-226	NM_016260	exon8	c.C1380A	p.V460V	ATTGAAGACCTTG	.	383	9	370	0	.	0	0	0	0	0	T	213872285	G	T	213872285	2	4	59	1	0	0	0	0	0	0	0	1	7636	929	33	3		3	IKZF2	2	213872285	Silent	SNP	G	TCGA-P6-A5OH-01A-11D-A30A-10	107190050	213872285	29327088	33	11635										
DNPEP	23549	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	220250725	220250725	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0676691729323308	18	0.539713201460978	1.36467627545184	2.46691480562448	0.72067174096895	0.139785384641228	0.738095238095239	0	ttgggcccaaagttctcgttGatatttcgctgcagatggat	11	8	1	2	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	DNPEP-90	NM_012100	exon6	c.C555G	p.I185M	CTCGTTGATATTT	.	260	57	130	0	.	0	0	0	0	0	C	220250725	G	C	220250725	3	2	59	1	0	0	0	0	1	0	0	0	4690	1280	45	3	942	3	DNPEP	2	220250725	Missense_Mutation	SNP	G	TCGA-P6-A5OH-01A-11D-A30A-10	6378440	220250725	22948648	34	11636										
ASB18	401036	hgsc.bcm.edu	37	chr2	237123104	237123104	+	Silent	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.0676691729323308	18	0.539713201460978	1.36467627545184	2.46691480562448	0.72067174096895	0.139785384641228	0.738095238095239	0	agagcgcaggatgcggtctgGagcacgcggcccagcggcga	18	12	1	1	rs7588748	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	ASB18-227	NM_212556	exon4	c.C1002G	p.L334L	GGTCTGGAGCACG	.	39	17	3	0	G|0.754;C|0.246	0	0	0	0	0	C	237123104	G	C	237123104	2	2	59	1	0	0	0	0	0	0	0	1	1023	1161	41	3		3	ASB18	2	237123104	Silent	SNP	G	TCGA-P6-A5OH-01A-11D-A30A-10	16872379	237123104	6076269	35	11637										
PRRT3	285368	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	9988097	9988097	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0676691729323308	18	0.539713201460978	1.36467627545184	2.46691480562448	0.72067174096895	0.139785384641228	0.738095238095239	0	tccactgatgacagcccgtgGcgccaggggttccaactgat	12	13	0	3	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	PRRT3-90	NM_207351	exon4	c.C2760T	p.R920R	CCCGTGGCGCCAG	.	258	67	126	0	.	0	0	0	0	0	A	9988097	G	A	9988097	2	1	59	1	0	0	0	0	0	0	0	1	12643	1190	42	3		3	PRRT3	3	9988097	Silent	SNP	G	TCGA-P6-A5OH-01A-11D-A30A-10		9988097	188034333	36	11638										
CCDC13	152206	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	42799655	42799655	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0676691729323308	18	0.539713201460978	1.36467627545184	2.46691480562448	0.72067174096895	0.139785384641228	0.738095238095239	0	ttcgagtttggctcccctgcGtggagaaggctgaggccatc	14	11	0	2	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	CCDC13-91	NM_144719	exon2	c.C183T	p.H61H	CCCTGCGTGGAGA	.	129	29	76	0	.	0	0	0	0	0	A	42799655	G	A	42799655	2	1	59	1	0	0	0	0	0	0	0	1	2771	1136	40	1		1	CCDC13	3	42799655	Silent	SNP	G	TCGA-P6-A5OH-01A-11D-A30A-10	32811558	42799655	155222775	37	11639										
SACM1L	22908	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	45776839	45776839	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0676691729323308	18	0.539713201460978	1.36467627545184	2.46691480562448	0.72067174096895	0.139785384641228	0.738095238095239	0	tgatccagagtttgttagctCgtcgttcacttcaggcccaa	9	11	2	2	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	SACM1L-91	NM_014016	exon14	c.C1213T	p.R405C	TTAGCTCGTCGTT	.	119	35	109	0	.	0	0	0	0	0	T	45776839	C	T	45776839	3	4	59	1	0	0	0	0	1	0	0	0	13838	884	31	1	1267	1	SACM1L	3	45776839	Missense_Mutation	SNP	C	TCGA-P6-A5OH-01A-11D-A30A-10	2977184	45776839	152245591	38	11640										
SCAP	22937	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr3	47455478	47455481	+	Frame_Shift_Del	DEL	CTGT	CTGT	-													0.0676691729323308	18	0.539713201460978	1.36467627545184	2.46691480562448	0.72067174096895	0.139785384641228	0.738095238095239	0	actgttcttccccaggtagaCtgtctgtaacaggtccccgt					novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	CTGT	CTGT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	SCAP-91	NM_012235	exon23	c.3703_3706del	p.1235_1236del	GGTAGACTGTCTG	.	137	0	103	0	.	0	0	0	0	0	-	47455481	CTGT	-	47455478	7	5	59	1	0	1	0	1	0	0	0	0	13912	565	20	0	137	0	SCAP	3	47455478	Frame_Shift_Del	DEL	CTGT	TCGA-P6-A5OH-01A-11D-A30A-10	1678639	47455478	150566952	39	11641										
CACNA1D	776	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	53844133	53844133	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0676691729323308	18	0.539713201460978	1.36467627545184	2.46691480562448	0.72067174096895	0.139785384641228	0.738095238095239	0	acaccgtgctacacccccctGatccaagtggagcagtcaga	9	15	1	2	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	CACNA1D-100	NM_000720	exon48	c.G6060C	p.L2020L	CCCCCTGATCCAA	.	177	38	128	0	.	0	0	0	0	0	C	53844133	G	C	53844133	2	2	59	1	0	0	0	0	0	0	0	1	2547	1277	45	3		3	CACNA1D	3	53844133	Silent	SNP	G	TCGA-P6-A5OH-01A-11D-A30A-10	6388655	53844133	144178297	40	11642										
LRIG1	26018	hgsc.bcm.edu	37	chr3	66550762	66550762	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0676691729323308	18	0.539713201460978	1.36467627545184	2.46691480562448	0.72067174096895	0.139785384641228	0.738095238095239	0	cggctccagccgaagcaaaaGcagccagagaaggagaaggc	14	11	0	2	rs1403626	byfrequency	TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	LRIG1-230	NM_015541	exon1	c.C70G	p.L24V	GCAAAAGCAGCCA	.	8	8	0	0	G|0.252;C|0.748	0	0	0	0	0	C	66550762	G	C	66550762	3	2	59	1	0	0	0	0	1	0	0	0	8971	971	34	3	3287	3	LRIG1	3	66550762	Missense_Mutation	SNP	G	TCGA-P6-A5OH-01A-11D-A30A-10	12706629	66550762	131471668	41	11643										
GBE1	2632	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	81627176	81627176	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0676691729323308	18	0.539713201460978	1.36467627545184	2.46691480562448	0.72067174096895	0.139785384641228	0.738095238095239	0	ataactggagtaaaaggagtCaggacactcatgtttgtata	10	5	2	0	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	GBE1-25	NM_000158	exon12	c.G1518T	p.L506L	AGGAGTCAGGACA	.	84	17	95	1	.	0	0	0	0	0	A	81627176	C	A	81627176	2	1	59	1	0	0	0	0	0	0	0	1	6290	813	29	3		3	GBE1	3	81627176	Silent	SNP	C	TCGA-P6-A5OH-01A-11D-A30A-10	15076414	81627176	116395254	42	11644										
PTPLB	201562	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	123247281	123247281	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0676691729323308	18	0.539713201460978	1.36467627545184	2.46691480562448	0.72067174096895	0.139785384641228	0.738095238095239	0	attagaaaaactcttgacatCacctggaaagaagtcaggac	8	8	3	3	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	PTPLB-226	NM_198402	exon4	c.G333A	p.V111V	TGACATCACCTGG	.	43	6	83	0	.	0	0	0	0	0	T	123247281	C	T	123247281	2	4	59	1	0	0	0	0	0	0	0	1	12810	813	29	3		3	PTPLB	3	123247281	Silent	SNP	C	TCGA-P6-A5OH-01A-11D-A30A-10	41620105	123247281	74775149	43	11645										
MYLK	4638	bcgsc.ca	37	chr3	123357037	123357037	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0676691729323308	18	0.539713201460978	1.36467627545184	2.46691480562448	0.72067174096895	0.139785384641228	0.738095238095239	0	aggaccttcagagaccccgcAttctctgaaaccaggatgga	10	12	2	2	rs820463	byfrequency	TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	MYLK-365	NM_053025	exon29	c.T4842C	p.N1614N	CCCCGCATTCTCT	.	126	5	158	0	A|0.733;G|0.267	0	0	0	0	0	G	123357037	A	G	123357037	2	3	59	1	0	0	0	0	0	0	0	1	10084	214	8	4		4	MYLK	3	123357037	Silent	SNP	A	TCGA-P6-A5OH-01A-11D-A30A-10	109756	123357037	74665393	44	11646										
COL6A5	256076	broad.mit.edu	37	chr3	130098349	130098349	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0676691729323308	18	0.539713201460978	1.36467627545184	2.46691480562448	0.72067174096895	0.139785384641228	0.738095238095239	0	gggaccggaggaaatttaagGcatcttcagaccttccttga	11	9	2	2	rs16845861	byfrequency	TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	.	NM_153264	exon4	c.G756A	p.R252R	TTTAAGGCATCTT	.	95	5	147	0	G|0.633;A|0.367	0	0	0	0	0	A	130098349	G	A	130098349	2	1	59	1	0	0	0	0	0	0	0	1	3708	1194	42	3		3	COL6A5	3	130098349	Silent	SNP	G	TCGA-P6-A5OH-01A-11D-A30A-10	6741312	130098349	67924081	45	11647										
ASTE1	28990	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	130737507	130737507	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0676691729323308	18	0.539713201460978	1.36467627545184	2.46691480562448	0.72067174096895	0.139785384641228	0.738095238095239	0	gggattggctccagaatggtCtgtttcaccttcagggtttc	12	9	3	1	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	ASTE1-90	NM_014065	exon4	c.G1356T	p.Q452H	AATGGTCTGTTTC	.	117	12	160	0	.	0	0	0	0	0	A	130737507	C	A	130737507	3	1	59	1	0	0	0	0	1	0	0	0	1063	912	32	3	695	3	ASTE1	3	130737507	Missense_Mutation	SNP	C	TCGA-P6-A5OH-01A-11D-A30A-10	639158	130737507	67284923	46	11648										
TSC22D2	9819	hgsc.bcm.edu	37	chr3	150128392	150128392	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0676691729323308	18	0.539713201460978	1.36467627545184	2.46691480562448	0.72067174096895	0.139785384641228	0.738095238095239	0	ccgtgggcaccggccagaatGcttcctcggtgggcgcgcag	16	14	0	1	rs879634	byfrequency	TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	TSC22D2-91	NM_014779	exon1	c.G1255A	p.A419T	CAGAATGCTTCCT	.	28	13	0	0	G|0.797;A|0.203	0	0	0	0	0	A	150128392	G	A	150128392	3	1	59	1	0	0	0	0	1	0	0	0	16646	1319	46	3	1257	3	TSC22D2	3	150128392	Missense_Mutation	SNP	G	TCGA-P6-A5OH-01A-11D-A30A-10	19390885	150128392	47894038	47	11649										
LRRC31	79782	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	169558017	169558017	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0676691729323308	18	0.539713201460978	1.36467627545184	2.46691480562448	0.72067174096895	0.139785384641228	0.738095238095239	0	gcacgttttggcagaacatgGtccaccccgcatcacagatg	10	13	1	2	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	LRRC31-93	NM_024727	exon9	c.C1412T	p.P471L	AACATGGTCCACC	.	217	24	137	0	.	0	0	0	0	0	A	169558017	G	A	169558017	3	1	59	1	0	0	0	0	1	0	0	0	9013	1261	44	3	250	3	LRRC31	3	169558017	Missense_Mutation	SNP	G	TCGA-P6-A5OH-01A-11D-A30A-10	19429625	169558017	28464413	48	11650										
HTR3D	200909	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	183756600	183756600	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0676691729323308	18	0.539713201460978	1.36467627545184	2.46691480562448	0.72067174096895	0.139785384641228	0.738095238095239	0	ggaggcagagctgacaggggGctcagaatggacaagggccc	18	9	1	3	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	HTR3D-90	NM_001163646	exon8	c.G1202A	p.G401D	CAGGGGGCTCAGA	.	488	75	280	1	.	0	0	0	0	0	A	183756600	G	A	183756600	3	1	59	1	0	0	0	0	1	0	0	0	7468	1203	42	3	1402	3	HTR3D	3	183756600	Missense_Mutation	SNP	G	TCGA-P6-A5OH-01A-11D-A30A-10	14198583	183756600	14265830	49	11651										
CRIPAK	285464	hgsc.bcm.edu	37	chr4	1388755	1388755	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0676691729323308	18	0.539713201460978	1.36467627545184	2.46691480562448	0.72067174096895	0.139785384641228	0.738095238095239	0	cccgcctgctcacacgtgccCatgcggagtgcccgcctgct	11	19	1	0	rs141481663	byfrequency	TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	CRIPAK-90	NM_175918	exon1	c.C456G	p.P152P	CGTGCCCATGCGG	.	72	13	3	0	C|0.960;G|0.040	0	0	0	0	0	G	1388755	C	G	1388755	2	3	59	1	0	0	0	0	0	0	0	1	3883	581	21	3		3	CRIPAK	4	1388755	Silent	SNP	C	TCGA-P6-A5OH-01A-11D-A30A-10		1388755	189765521	50	11652										
TNIP2	79155	hgsc.bcm.edu	37	chr4	2757800	2757800	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0676691729323308	18	0.539713201460978	1.36467627545184	2.46691480562448	0.72067174096895	0.139785384641228	0.738095238095239	0	tcgcagctgctcccggaagcGcgcaacctgctccagcagcg	12	17	0	0	rs74548850	byfrequency	TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	TNIP2-90	NM_024309	exon1	c.C217G	p.R73G	GGAAGCGCGCAAC	.	15	8	0	0	G|0.957;C|0.043	0	0	0	0	0	C	2757800	G	C	2757800	3	2	59	1	0	0	0	0	1	0	0	0	16352	1087	38	2	1096	2	TNIP2	4	2757800	Missense_Mutation	SNP	G	TCGA-P6-A5OH-01A-11D-A30A-10	1369045	2757800	188396476	51	11653										
JAKMIP1	152789	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	6114570	6114570	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0676691729323308	18	0.539713201460978	1.36467627545184	2.46691480562448	0.72067174096895	0.139785384641228	0.738095238095239	0	cgcccttgctccggcctttcTtcgacatgcttccccttggg	9	17	1	0	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	JAKMIP1-292	NM_001099433	exon2	c.A8G	p.K3R	CCTTTCTTCGACA	.	85	27	60	0	.	0	0	0	0	0	C	6114570	T	C	6114570	3	2	59	1	0	0	0	0	1	0	0	0	7961	1609	56	4	2642	4	JAKMIP1	4	6114570	Missense_Mutation	SNP	T	TCGA-P6-A5OH-01A-11D-A30A-10	3356770	6114570	185039706	52	11654										
CCDC96	257236	hgsc.bcm.edu	37	chr4	7044357	7044357	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0676691729323308	18	0.539713201460978	1.36467627545184	2.46691480562448	0.72067174096895	0.139785384641228	0.738095238095239	0	tgggcgggctcctcagccccAacctcggccggctcttcggg	14	17	2	0	rs871133		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	CCDC96-90	NM_153376	exon1	c.T309C	p.V103V	AGCCCCAACCTCG	.	10	10	0	0	A|0.036;G|0.964	0	0	0	0	0	G	7044357	A	G	7044357	2	3	59	1	0	0	0	0	0	0	0	1	2880	117	5	4		4	CCDC96	4	7044357	Silent	SNP	A	TCGA-P6-A5OH-01A-11D-A30A-10	929787	7044357	184109919	53	11655										
SEL1L3	23231	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	25760664	25760664	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0676691729323308	18	0.539713201460978	1.36467627545184	2.46691480562448	0.72067174096895	0.139785384641228	0.738095238095239	0	gggattatcgtaccttcctcGattagcagggccaggttaaa	11	9	0	0	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	.	NM_015187	exon21	c.C2982T	p.I994I	TTCCTCGATTAGC	.	79	37	78	1	.	0	0	0	0	0	A	25760664	G	A	25760664	2	1	59	1	0	0	0	0	0	0	0	1	14047	1048	37	1		1	SEL1L3	4	25760664	Silent	SNP	G	TCGA-P6-A5OH-01A-11D-A30A-10	18716307	25760664	165393612	54	11656										
ZAR1	326340	hgsc.bcm.edu	37	chr4	48492434	48492434	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0676691729323308	18	0.539713201460978	1.36467627545184	2.46691480562448	0.72067174096895	0.139785384641228	0.738095238095239	0	gcgggcggcagctggcagcaGcgcggcaggggctgccttcc	19	14	0	0	rs10008444		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	ZAR1-90	NM_175619	exon1	c.G126C	p.Q42H	GCAGCAGCGCGGC	.	10	10	0	0	G|0.025;C|0.975	0	0	0	0	0	C	48492434	G	C	48492434	3	2	59	1	0	0	0	0	1	0	0	0	17553	962	34	3	128	3	ZAR1	4	48492434	Missense_Mutation	SNP	G	TCGA-P6-A5OH-01A-11D-A30A-10	22731770	48492434	142661842	55	11657										
ALPK1	80216	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	113352657	113352657	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0676691729323308	18	0.539713201460978	1.36467627545184	2.46691480562448	0.72067174096895	0.139785384641228	0.738095238095239	0	ttcatgatctctctcttcagGaacccaacaatgacaatttg	5	11	4	2	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	ALPK1-337	NM_001102406	exon11	c.G1954A	p.E652K	CTTCAGGAACCCA	.	116	17	124	1	.	0	0	0	0	0	A	113352657	G	A	113352657	3	1	59	1	0	0	0	0	1	0	0	0	544	1175	41	3	1988	3	ALPK1	4	113352657	Missense_Mutation	SNP	G	TCGA-P6-A5OH-01A-11D-A30A-10	64860223	113352657	77801619	56	11658										
INTU	27152	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	128628123	128628123	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0676691729323308	18	0.539713201460978	1.36467627545184	2.46691480562448	0.72067174096895	0.139785384641228	0.738095238095239	0	agaaagtgggaccttgcttaAggtgtgtgcttattcaagtg	13	5	1	1	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	INTU-91	NM_015693	exon12	c.A2270T	p.K757M	TGCTTAAGGTGTG	.	127	17	151	0	.	0	0	0	0	0	T	128628123	A	T	128628123	3	4	59	1	0	0	0	0	1	0	0	0	7807	86	3	5	2316	5	INTU	4	128628123	Missense_Mutation	SNP	A	TCGA-P6-A5OH-01A-11D-A30A-10	15275466	128628123	62526153	57	11659										
PCDH10	57575	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	134072249	134072249	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0676691729323308	18	0.539713201460978	1.36467627545184	2.46691480562448	0.72067174096895	0.139785384641228	0.738095238095239	0	gtaagcggcgagttggactaTgaagagagcccagtgtacca	14	8	0	2	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	PCDH10-92	NM_032961	exon1	c.T954C	p.Y318Y	GGACTATGAAGAG	.	156	40	123	0	.	0	0	0	0	0	C	134072249	T	C	134072249	2	2	59	1	0	0	0	0	0	0	0	1	11536	1471	51	4		4	PCDH10	4	134072249	Silent	SNP	T	TCGA-P6-A5OH-01A-11D-A30A-10	5444126	134072249	57082027	58	11660										
TTC29	83894	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	147830303	147830303	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0676691729323308	18	0.539713201460978	1.36467627545184	2.46691480562448	0.72067174096895	0.139785384641228	0.738095238095239	0	tcgcagcctccctcagggcaTcccaccgctccatcagagcg	9	19	2	1	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	TTC29-90	NM_031956	exon5	c.A275C	p.D92A	AGGGCATCCCACC	.	49	10	57	0	.	0	0	0	0	0	G	147830303	T	G	147830303	3	3	59	1	0	0	0	0	1	0	0	0	16734	1435	50	5	1188	5	TTC29	4	147830303	Missense_Mutation	SNP	T	TCGA-P6-A5OH-01A-11D-A30A-10	13758054	147830303	43323973	59	11661										
SRD5A1	6715	hgsc.bcm.edu	37	chr5	6633779	6633779	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0676691729323308	18	0.539713201460978	1.36467627545184	2.46691480562448	0.72067174096895	0.139785384641228	0.738095238095239	0	ggctgcgcggtcttcgcgcgCaatcgtcagacgaactcagt	13	13	3	1	rs248793	byfrequency	TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	SRD5A1-90	NM_001047	exon1	c.C90G	p.R30R	CGCGCGCAATCGT	.	9	6	0	0	C|0.454;G|0.546	0	0	0	0	0	G	6633779	C	G	6633779	2	3	59	1	0	0	0	0	0	0	0	1	15175	697	25	3		3	SRD5A1	5	6633779	Silent	SNP	C	TCGA-P6-A5OH-01A-11D-A30A-10		6633779	174281481	60	11662										
EGFLAM	133584	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	38418285	38418285	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0676691729323308	18	0.539713201460978	1.36467627545184	2.46691480562448	0.72067174096895	0.139785384641228	0.738095238095239	0	ttcaaggctgtgtgcagtcgCtcgctgtgaatgggaggaga	16	7	1	2	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	EGFLAM-187	NM_001205301	exon12	c.C1612T	p.L538F	CAGTCGCTCGCTG	.	205	35	152	2	.	0	0	0	0	0	T	38418285	C	T	38418285	3	4	59	1	0	0	0	0	1	0	0	0	4977	797	28	3	1672	3	EGFLAM	5	38418285	Missense_Mutation	SNP	C	TCGA-P6-A5OH-01A-11D-A30A-10	31784506	38418285	142496975	61	11663										
NAIP	4671	broad.mit.edu;bcgsc.ca	37	chr5	70308258	70308258	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0676691729323308	18	0.539713201460978	1.36467627545184	2.46691480562448	0.72067174096895	0.139785384641228	0.738095238095239	0	agttcctgaaggacgcaagtCtagcctcctcttcttggtac	9	12	3	1	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	NAIP-205	NM_004536	exon4	c.G485C	p.R162T	GCAAGTCTAGCCT	.	204	6	120	0	.	0	0	0	0	0	G	70308258	C	G	70308258	3	3	59	1	0	0	0	0	1	0	0	0	10175	913	32	3	3782	3	NAIP	5	70308258	Missense_Mutation	SNP	C	TCGA-P6-A5OH-01A-11D-A30A-10	31889973	70308258	110607002	62	11664										
HMGCR	3156	broad.mit.edu;bcgsc.ca	37	chr5	74639696	74639698	+	In_Frame_Del	DEL	ATT	ATT	-													0.0676691729323308	18	0.539713201460978	1.36467627545184	2.46691480562448	0.72067174096895	0.139785384641228	0.738095238095239	0	aggatgttttgagcagtgacAttataattctgacaataaca					novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	HMGCR-227	NM_001130996	exon3	c.184_186del	p.62_62del	AGTGACATTATAA	.	295	38	278	0	.	0	0	0	0	0	-	74639698	ATT	-	74639696	7	5	59	1	0	1	0	1	0	0	0	0	7252	217	8	0	190	0	HMGCR	5	74639696	In_Frame_Del	DEL	ATT	TCGA-P6-A5OH-01A-11D-A30A-10	4331438	74639696	106275564	63	11665										
GPR98	84059	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr5	90055402	90055402	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0676691729323308	18	0.539713201460978	1.36467627545184	2.46691480562448	0.72067174096895	0.139785384641228	0.738095238095239	0	gtatttggatttgaagaaaaGactgtaagttaaacatatca	8	3	1	3	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	GPR98-103	NM_032119	exon58	c.G12117C	p.K4039N	AGAAAAGACTGTA	.	108	8	90	0	.	0	0	0	0	0	C	90055402	G	C	90055402	3	2	59	1	0	0	0	0	1	0	0	0	6742	933	33	3	12347	3	GPR98	5	90055402	Missense_Mutation	SNP	G	TCGA-P6-A5OH-01A-11D-A30A-10	15415706	90055402	90859858	64	11666										
RGMB	285704	hgsc.bcm.edu	37	chr5	98109838	98109838	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0676691729323308	18	0.539713201460978	1.36467627545184	2.46691480562448	0.72067174096895	0.139785384641228	0.738095238095239	0	ccgaggttgagcagcgccgcAgccccgggctctgccccccg	14	19	1	1	rs2662263		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	.	NM_001012761	exon3	c.A187C	p.S63R	CGCCGCAGCCCCG	.	5	5	0	0	T|0.046;G|0.950	0	0	0	0	0	C	98109838	A	C	98109838	3	2	59	1	0	0	0	0	1	0	0	0	13316	188	7	5	193	5	RGMB	5	98109838	Missense_Mutation	SNP	A	TCGA-P6-A5OH-01A-11D-A30A-10	8054436	98109838	82805422	65	11667										
ST8SIA4	7903	hgsc.bcm.edu	37	chr5	100147798	100147798	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0676691729323308	18	0.539713201460978	1.36467627545184	2.46691480562448	0.72067174096895	0.139785384641228	0.738095238095239	0	acatgagaagacctgtgctgGgtcttttgataggaactttg	12	6	1	3	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	ST8SIA4-153	NM_005668	exon5	c.C833A	p.P278H	GTGCTGGGTCTTT	.	87	5	51	0	.	0	0	0	0	0	T	100147798	G	T	100147798	3	4	59	1	0	0	0	0	1	0	0	0	15271	1232	43	3	250	3	ST8SIA4	5	100147798	Missense_Mutation	SNP	G	TCGA-P6-A5OH-01A-11D-A30A-10	2037960	100147798	80767462	66	11668										
ZNF474	133923	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	121487769	121487769	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0676691729323308	18	0.539713201460978	1.36467627545184	2.46691480562448	0.72067174096895	0.139785384641228	0.738095238095239	0	gaacccactttccttatcaaCcaagctgggcttctctctag	6	14	3	0	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	ZNF474-90	NM_207317	exon2	c.C84G	p.N28K	TATCAACCAAGCT	.	92	20	94	0	.	0	0	0	0	0	G	121487769	C	G	121487769	3	3	59	1	0	0	0	0	1	0	0	0	17969	506	18	3	86	3	ZNF474	5	121487769	Missense_Mutation	SNP	C	TCGA-P6-A5OH-01A-11D-A30A-10	21339971	121487769	59427491	67	11669										
CHSY3	337876	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	129241282	129241282	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0676691729323308	18	0.539713201460978	1.36467627545184	2.46691480562448	0.72067174096895	0.139785384641228	0.738095238095239	0	acgaccactacctggacaagTatgagtggttcatgcgcgcc	11	12	1	1	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	CHSY3-25	NM_175856	exon1	c.T760C	p.Y254H	GACAAGTATGAGT	.	276	39	148	0	.	0	0	0	0	0	C	129241282	T	C	129241282	3	2	59	1	0	0	0	0	1	0	0	0	3419	1638	57	4	762	4	CHSY3	5	129241282	Missense_Mutation	SNP	T	TCGA-P6-A5OH-01A-11D-A30A-10	7753513	129241282	51673978	68	11670										
PCDHA8	56140	broad.mit.edu;bcgsc.ca	37	chr5	140221852	140221852	+	Frame_Shift_Del	DEL	T	T	-													0.0676691729323308	18	0.539713201460978	1.36467627545184	2.46691480562448	0.72067174096895	0.139785384641228	0.738095238095239	0	attttgaacaagaaaacttaTacaaaatcctcattgacgcc					novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	PCDHA8-92	NM_031856	exon1	c.946delT	p.Y316fs	AACTTATACAAAA	.	476	66	435	0	.	0	0	0	0	0	-	140221852	T	-	140221852	7	5	59	1	0	1	0	1	0	0	0	0	11559	1406	49	0	948	0	PCDHA8	5	140221852	Frame_Shift_Del	DEL	T	TCGA-P6-A5OH-01A-11D-A30A-10	10980570	140221852	40693408	69	11671										
PCDHA12	56137	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	140255507	140255507	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0676691729323308	18	0.539713201460978	1.36467627545184	2.46691480562448	0.72067174096895	0.139785384641228	0.738095238095239	0	gaatctgcgcctctggactcTcattttcctctagagggcgc	10	13	4	1	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	.	NM_018903	exon1	c.T450A	p.S150S	GGACTCTCATTTT	.	197	38	148	0	.	0	0	0	0	0	A	140255507	T	A	140255507	2	1	59	1	0	0	0	0	0	0	0	1	11551	1538	54	5		5	PCDHA12	5	140255507	Silent	SNP	T	TCGA-P6-A5OH-01A-11D-A30A-10	33655	140255507	40659753	70	11672										
PCDHB13	56123	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	140594583	140594583	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0676691729323308	18	0.539713201460978	1.36467627545184	2.46691480562448	0.72067174096895	0.139785384641228	0.738095238095239	0	ggcaaaacctttaagatcaaTcccttgacaggagaaattga	8	8	1	4	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	PCDHB13-93	NM_018933	exon1	c.T888C	p.N296N	GATCAATCCCTTG	.	194	48	228	1	.	0	0	0	0	0	C	140594583	T	C	140594583	2	2	59	1	0	0	0	0	0	0	0	1	11567	1432	50	4		4	PCDHB13	5	140594583	Silent	SNP	T	TCGA-P6-A5OH-01A-11D-A30A-10	339076	140594583	40320677	71	11673										
PCDHGA8	9708	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr5	140774156	140774156	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0676691729323308	18	0.539713201460978	1.36467627545184	2.46691480562448	0.72067174096895	0.139785384641228	0.738095238095239	0	tacctggtgaccaaggtggtGgcggtggacagagactcggg	18	8	0	2	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	.	NM_014004	exon1	c.G1776A	p.V592V	GGTGGTGGCGGTG	.	353	64	84	0	.	0	0	0	0	0	A	140774156	G	A	140774156	2	1	59	1	0	0	0	0	0	0	0	1	11589	1335	47	3		3	PCDHGA8	5	140774156	Silent	SNP	G	TCGA-P6-A5OH-01A-11D-A30A-10	179573	140774156	40141104	72	11674										
PCDHGB7	56099	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	140799544	140799544	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0676691729323308	18	0.539713201460978	1.36467627545184	2.46691480562448	0.72067174096895	0.139785384641228	0.738095238095239	0	tctgtgctctttctcctcgcGgtgattctagctattgctct	8	12	5	1	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	PCDHGB7-29	NM_018927	exon1	c.G2118A	p.A706A	CCTCGCGGTGATT	.	202	32	142	0	.	0	0	0	0	0	A	140799544	G	A	140799544	2	1	59	1	0	0	0	0	0	0	0	1	11597	1103	39	1		1	PCDHGB7	5	140799544	Silent	SNP	G	TCGA-P6-A5OH-01A-11D-A30A-10	25388	140799544	40115716	73	11675										
KCTD16	57528	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr5	143853595	143853595	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0676691729323308	18	0.539713201460978	1.36467627545184	2.46691480562448	0.72067174096895	0.139785384641228	0.738095238095239	0	ggagaaatgtatccaggattTcctaaaaatcaaaattccag	7	7	1	1	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	KCTD16-137	NM_020768	exon4	c.T1205C	p.F402S	AGGATTTCCTAAA	.	118	8	133	0	.	0	0	0	0	0	C	143853595	T	C	143853595	3	2	59	1	0	0	0	0	1	0	0	0	8124	1783	62	4	1211	4	KCTD16	5	143853595	Missense_Mutation	SNP	T	TCGA-P6-A5OH-01A-11D-A30A-10	3054051	143853595	37061665	74	11676										
FBXO38	81545	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	147820759	147820759	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0676691729323308	18	0.539713201460978	1.36467627545184	2.46691480562448	0.72067174096895	0.139785384641228	0.738095238095239	0	gtcattacgagctgcagagcCcaacagcttcgctcgatacg	10	13	1	1	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	FBXO38-231	NM_030793	exon21	c.C3122G	p.P1041R	CAGAGCCCAACAG	.	133	18	131	0	.	0	0	0	0	0	G	147820759	C	G	147820759	3	3	59	1	0	0	0	0	1	0	0	0	5765	623	22	3	3425	3	FBXO38	5	147820759	Missense_Mutation	SNP	C	TCGA-P6-A5OH-01A-11D-A30A-10	3967164	147820759	33094501	75	11677										
ARL10	285598	hgsc.bcm.edu	37	chr5	175792605	175792605	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0676691729323308	18	0.539713201460978	1.36467627545184	2.46691480562448	0.72067174096895	0.139785384641228	0.738095238095239	0	ggccccttggtgctggcgctGggcggcgccgcggcggtgct	20	14	0	0	rs2303667		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	ARL10-91	NM_173664	exon1	c.G39C	p.L13L	GGCGCTGGGCGGC	.	6	6	0	0	G|0.585;C|0.415	0	0	0	0	0	C	175792605	G	C	175792605	2	2	59	1	0	0	0	0	0	0	0	1	926	1335	47	3		3	ARL10	5	175792605	Silent	SNP	G	TCGA-P6-A5OH-01A-11D-A30A-10	27971846	175792605	5122655	76	11678										
UNC5A	90249	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	176305481	176305481	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.0676691729323308	18	0.539713201460978	1.36467627545184	2.46691480562448	0.72067174096895	0.139785384641228	0.738095238095239	0	ctgcatccccatcaggagatCcccttttatcacatctggaa	6	14	3	1	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	UNC5A-91	NM_133369	exon13	c.C2025G	p.I675M	GGAGATCCCCTTT	.	377	57	201	0	.	0	0	0	0	0	G	176305481	C	G	176305481	3	3	59	1	0	0	0	0	1	0	0	0	17029	845	30	3	2075	3	UNC5A	5	176305481	Missense_Mutation	SNP	C	TCGA-P6-A5OH-01A-11D-A30A-10	512876	176305481	4609779	77	11679										
DBN1	1627	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	176885468	176885468	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0676691729323308	18	0.539713201460978	1.36467627545184	2.46691480562448	0.72067174096895	0.139785384641228	0.738095238095239	0	tggtgtcagcagtggcagtgTcagtttcaatggtgtcagct	14	7	4	0	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	DBN1-587	NM_080881	exon13	c.A1373C	p.D458A	GCAGTGTCAGTTT	.	688	135	292	3	.	0	0	0	0	0	G	176885468	T	G	176885468	3	3	59	1	0	0	0	0	1	0	0	0	4258	1667	58	5	594	5	DBN1	5	176885468	Missense_Mutation	SNP	T	TCGA-P6-A5OH-01A-11D-A30A-10	579987	176885468	4029792	78	11680										
DBN1	1627	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	176894041	176894041	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0676691729323308	18	0.539713201460978	1.36467627545184	2.46691480562448	0.72067174096895	0.139785384641228	0.738095238095239	0	gggccttcttccgctcctccTccttccgcagctcttcttcc	6	20	3	0	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	DBN1-587	NM_080881	exon8	c.A584C	p.E195A	TCCTCCTCCTTCC	.	95	8	34	0	.	0	0	0	0	0	G	176894041	T	G	176894041	3	3	59	1	0	0	0	0	1	0	0	0	4258	1551	54	5	1403	5	DBN1	5	176894041	Missense_Mutation	SNP	T	TCGA-P6-A5OH-01A-11D-A30A-10	8573	176894041	4021219	79	11681										
FOXQ1	94234	hgsc.bcm.edu	37	chr6	1313117	1313117	+	Missense_Mutation	SNP	A	A	C													0.0676691729323308	18	0.539713201460978	1.36467627545184	2.46691480562448	0.72067174096895	0.139785384641228	0.738095238095239	0	cgggcggcggcgccagagatAcgcagggcgacggcgaacag					rs9502889		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	FOXQ1-226	NM_033260	exon1	c.A178C	p.T60P	AGAGATACGCAGG	.	7	7	0	0	A|0.161;C|0.839	0	0	0	0	0	C	1313117	A	C	1313117	3	2	59	1	0	0	0	0	1	0	0	0	6049	391	14	5	180	5	FOXQ1	6	1313117	Missense_Mutation	SNP	A	TCGA-P6-A5OH-01A-11D-A30A-10		1313117	169801950	80	11682	132	2								
FOXQ1	94234	hgsc.bcm.edu	37	chr6	1313121	1313121	+	Missense_Mutation	SNP	A	A	C													0.0676691729323308	18	0.539713201460978	1.36467627545184	2.46691480562448	0.72067174096895	0.139785384641228	0.738095238095239	0	cggcggcgccagagatacgcAgggcgacggcgaacagagtg					rs9502890		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	FOXQ1-226	NM_033260	exon1	c.A182C	p.Q61P	ATACGCAGGGCGA	.	7	7	0	0	A|0.173;C|0.827	0	0	0	0	0	C	1313121	A	C	1313121	3	2	59	1	0	0	0	0	1	0	0	0	6049	188	7	5	184	5	FOXQ1	6	1313121	Missense_Mutation	SNP	A	TCGA-P6-A5OH-01A-11D-A30A-10	4	1313121	169801946	81	11683	132	2								
STK19	8859	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr6	31940267	31940267	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.0676691729323308	18	0.539713201460978	1.36467627545184	2.46691480562448	0.72067174096895	0.139785384641228	0.738095238095239	0	agcgagggcctgtggagtcgGatcctcttcggggtgagcca	17	10	1	1	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	STK19-336	NM_032454	exon2	c.G409C	p.D137H	GAGTCGGATCCTC	.	38	8	44	0	.	0	0	0	0	0	C	31940267	G	C	31940267	3	2	59	1	0	0	0	0	1	0	0	0	15329	1174	41	3	415	3	STK19	6	31940267	Missense_Mutation	SNP	G	TCGA-P6-A5OH-01A-11D-A30A-10	30627146	31940267	139174800	82	11684										
ITPR3	3710	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	33651116	33651116	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0676691729323308	18	0.539713201460978	1.36467627545184	2.46691480562448	0.72067174096895	0.139785384641228	0.738095238095239	0	ggcaaccacgcgggccttccCccgcgtcacccccaccgcca	9	23	1	0	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	ITPR3-1085	NM_002224	exon35	c.C4730G	p.P1577R	CCTTCCCCCGCGT	.	226	64	132	1	.	0	0	0	0	0	G	33651116	C	G	33651116	3	3	59	1	0	0	0	0	1	0	0	0	7943	623	22	3	4868	3	ITPR3	6	33651116	Missense_Mutation	SNP	C	TCGA-P6-A5OH-01A-11D-A30A-10	1710849	33651116	137463951	83	11685										
PEX6	5190	hgsc.bcm.edu	37	chr6	42946490	42946490	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0676691729323308	18	0.539713201460978	1.36467627545184	2.46691480562448	0.72067174096895	0.139785384641228	0.738095238095239	0	tccagcacccgcggtccgggCactgggagggtctctccgcg	15	16	1	0	rs9462858	byfrequency	TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	PEX6-91	NM_000287	exon1	c.G399T	p.V133V	TCCGGGCACTGGG	.	10	6	0	0	C|0.673;A|0.327	0	0	0	0	0	A	42946490	C	A	42946490	2	1	59	1	0	0	0	0	0	0	0	1	11779	697	25	3		3	PEX6	6	42946490	Silent	SNP	C	TCGA-P6-A5OH-01A-11D-A30A-10	9295374	42946490	128168577	84	11686										
CENPQ	55166	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	49456158	49456158	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0676691729323308	18	0.539713201460978	1.36467627545184	2.46691480562448	0.72067174096895	0.139785384641228	0.738095238095239	0	agattctggcaagtgaggtgGaagaagaagaggagagagta	17	2	1	6	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	CENPQ-92	NM_018132	exon7	c.G571T	p.E191X	GAGGTGGAAGAAG	.	176	31	228	0	.	0	0	0	0	0	T	49456158	G	T	49456158	4	4	59	1	0	0	0	0	0	1	0	0	3247	1175	41	3	593	3	CENPQ	6	49456158	Nonsense_Mutation	SNP	G	TCGA-P6-A5OH-01A-11D-A30A-10	6509668	49456158	121658909	85	11687										
DST	667	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	56391195	56391195	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0676691729323308	18	0.539713201460978	1.36467627545184	2.46691480562448	0.72067174096895	0.139785384641228	0.738095238095239	0	atggctgcatcgatctcctcCaccttctgagtgatggtgtc	10	12	2	2	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	DST-523	NM_015548	exon50	c.G10224T	p.V3408V	CTCCTCCACCTTC	.	149	38	162	0	.	0	0	0	0	0	A	56391195	C	A	56391195	2	1	59	1	0	0	0	0	0	0	0	1	4794	581	21	3		3	DST	6	56391195	Silent	SNP	C	TCGA-P6-A5OH-01A-11D-A30A-10	6935037	56391195	114723872	86	11688										
PHF3	23469	broad.mit.edu	37	chr6	64422984	64422984	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0676691729323308	18	0.539713201460978	1.36467627545184	2.46691480562448	0.72067174096895	0.139785384641228	0.738095238095239	0	gcatgtttggatttccaccaCatttgccacctccattactt	5	13	0	0	rs3734881	byfrequency	TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	PHF3-229	NM_015153	exon15	c.C5500T	p.H1834Y	CCACCACATTTGC	.	26	3	43	0	C|0.995;T|0.005	0	0	0	0	0	T	64422984	C	T	64422984	3	4	59	1	0	0	0	0	1	0	0	0	11865	478	17	3	5558	3	PHF3	6	64422984	Missense_Mutation	SNP	C	TCGA-P6-A5OH-01A-11D-A30A-10	8031789	64422984	106692083	87	11689										
RAET1G	353091	bcgsc.ca	37	chr6	150240829	150240829	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0676691729323308	18	0.539713201460978	1.36467627545184	2.46691480562448	0.72067174096895	0.139785384641228	0.738095238095239	0	ggggactgacgggtgtgactGtcttgctgccacagtcatag	15	9	2	2	rs9397449	byfrequency	TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	RAET1G-90	NM_001001788	exon2	c.C209G	p.T70R	GTGACTGTCTTGC	.	604	16	593	7	G|0.807;C|0.193	0	0	0	0	0	C	150240829	G	C	150240829	3	2	59	1	0	0	0	0	1	0	0	0	13035	1377	48	3	811	3	RAET1G	6	150240829	Missense_Mutation	SNP	G	TCGA-P6-A5OH-01A-11D-A30A-10	85817845	150240829	20874238	88	11690										
SYTL3	94120	bcgsc.ca	37	chr6	159178345	159178345	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0676691729323308	18	0.539713201460978	1.36467627545184	2.46691480562448	0.72067174096895	0.139785384641228	0.738095238095239	0	ttcttggagaagtgatcattCctctggccacgtgggacttt	11	9	3	2	rs901363	byfrequency	TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	SYTL3-90	NM_001242384	exon15	c.C1240T	p.P414S	ATCATTCCTCTGG	.	121	7	105	0	C|0.605;T|0.395	0	0	0	0	0	T	159178345	C	T	159178345	3	4	59	1	0	0	0	0	1	0	0	0	15521	855	30	3	1070	3	SYTL3	6	159178345	Missense_Mutation	SNP	C	TCGA-P6-A5OH-01A-11D-A30A-10	8937516	159178345	11936722	89	11691										
USP42	84132	hgsc.bcm.edu	37	chr7	6193521	6193521	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0676691729323308	18	0.539713201460978	1.36467627545184	2.46691480562448	0.72067174096895	0.139785384641228	0.738095238095239	0	caagaaggctccgccgccccGcgatcccggcacccccgcta	10	21	0	1	rs61729726	byfrequency	TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	USP42-659	NM_032172	exon15	c.G2336C	p.R779P	CGCCCCGCGATCC	.	17	5	0	0	G|0.456;C|0.544	0	0	0	0	0	C	6193521	G	C	6193521	3	2	59	1	0	0	0	0	1	0	0	0	17111	1087	38	2		2	USP42	7	6193521	Missense_Mutation	SNP	G	TCGA-P6-A5OH-01A-11D-A30A-10		6193521	152945142	90	11692										
GARS	2617	hgsc.bcm.edu	37	chr7	30634661	30634661	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0676691729323308	18	0.539713201460978	1.36467627545184	2.46691480562448	0.72067174096895	0.139785384641228	0.738095238095239	0	ccctcagcgcggcctcctgcCccccgatctccttgcccgcc	8	24	2	0	rs1049402	byfrequency	TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	GARS-91	NM_002047	exon1	c.C124G	p.P42A	TCCTGCCCCCCGA	.	19	19	0	0	C|0.329;G|0.671	0	0	0	0	0	G	30634661	C	G	30634661	3	3	59	1	0	0	0	0	1	0	0	0	6262	623	22	3	126	3	GARS	7	30634661	Missense_Mutation	SNP	C	TCGA-P6-A5OH-01A-11D-A30A-10	24441140	30634661	128504002	91	11693										
ANLN	54443	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr7	36436004	36436006	+	In_Frame_Del	DEL	CAG	CAG	-													0.0676691729323308	18	0.539713201460978	1.36467627545184	2.46691480562448	0.72067174096895	0.139785384641228	0.738095238095239	0	cactttcagaagcaagtaacCagcagcccctctctggtggt					novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	CAG	CAG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	ANLN-517	NM_018685	exon2	c.148_150del	p.50_50del	AGTAACCAGCAGC	.	103	25	142	0	.	0	0	0	0	0	-	36436006	CAG	-	36436004	7	5	59	1	0	1	0	1	0	0	0	0	694	595	21	0	154	0	ANLN	7	36436004	In_Frame_Del	DEL	CAG	TCGA-P6-A5OH-01A-11D-A30A-10	5801343	36436004	122702659	92	11694										
GLI3	2737	broad.mit.edu;bcgsc.ca	37	chr7	42005406	42005406	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0676691729323308	18	0.539713201460978	1.36467627545184	2.46691480562448	0.72067174096895	0.139785384641228	0.738095238095239	0	gtcgtccggcaggaaatcctCatcgttcaggttggcatcag	12	11	3	0	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	GLI3-1149	NM_000168	exon15	c.G3265A	p.E1089K	AATCCTCATCGTT	.	307	11	215	0	.	0	0	0	0	0	T	42005406	C	T	42005406	3	4	59	1	0	0	0	0	1	0	0	0	6459	835	29	3	1481	3	GLI3	7	42005406	Missense_Mutation	SNP	C	TCGA-P6-A5OH-01A-11D-A30A-10	5569402	42005406	117133257	93	11695										
GLI3	2737	hgsc.bcm.edu	37	chr7	42005678	42005678	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0676691729323308	18	0.539713201460978	1.36467627545184	2.46691480562448	0.72067174096895	0.139785384641228	0.738095238095239	0	ccctcctcacgccgtggcccGgcgcatcgtgcggctgcagg	14	18	1	0	rs929387	byfrequency	TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	GLI3-1149	NM_000168	exon15	c.C2993T	p.P998L	TGGCCCGGCGCAT	.	5	4	0	0	G|0.565;A|0.435	0	0	0	0	0	A	42005678	G	A	42005678	3	1	59	1	0	0	0	0	1	0	0	0	6459	1116	39	1	1753	1	GLI3	7	42005678	Missense_Mutation	SNP	G	TCGA-P6-A5OH-01A-11D-A30A-10	272	42005678	117132985	94	11696										
WBSCR22	114049	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr7	73101340	73101340	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.0676691729323308	18	0.539713201460978	1.36467627545184	2.46691480562448	0.72067174096895	0.139785384641228	0.738095238095239	0	ctaatgtagatgaggctgtgGaccgagagatagagggagac	16	5	0	5	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	WBSCR22-90	NM_001202560	exon5	c.G277C	p.D93H	GCTGTGGACCGAG	.	80	4	61	0	.	0	0	0	0	0	C	73101340	G	C	73101340	3	2	59	1	0	0	0	0	1	0	0	0	17303	1174	41	3	295	3	WBSCR22	7	73101340	Missense_Mutation	SNP	G	TCGA-P6-A5OH-01A-11D-A30A-10	31095662	73101340	86037323	95	11697										
TFPI2	7980	bcgsc.ca	37	chr7	93518486	93518486	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0676691729323308	18	0.539713201460978	1.36467627545184	2.46691480562448	0.72067174096895	0.139785384641228	0.738095238095239	0	aaatacttttctgtggacccCtcacactggtcgtccacact	6	14	2	0	rs34489123	byfrequency	TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	TFPI2-515	NM_006528	exon3	c.G321A	p.E107E	GGACCCCTCACAC	.	89	6	110	0	C|0.942;T|0.058	0	0	0	0	0	T	93518486	C	T	93518486	2	4	59	1	0	0	0	0	0	0	0	1	15846	680	24	3		3	TFPI2	7	93518486	Silent	SNP	C	TCGA-P6-A5OH-01A-11D-A30A-10	20417146	93518486	65620177	96	11698										
AP1S1	1174	broad.mit.edu	37	chr7	100800053	100800053	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0676691729323308	18	0.539713201460978	1.36467627545184	2.46691480562448	0.72067174096895	0.139785384641228	0.738095238095239	0	cctcaaagttgtctataagaGgtgactccccacctactttc	6	13	2	2	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	AP1S1-226	NM_001283	exon2	c.G182C	p.R61T	ATAAGAGGTGACT	.	29	3	25	0	.	0	0	0	0	0	C	100800053	G	C	100800053	3	2	59	1	0	0	0	0	1	0	0	0	736	1014	35	3	188	3	AP1S1	7	100800053	Missense_Mutation	SNP	G	TCGA-P6-A5OH-01A-11D-A30A-10	7281567	100800053	58338610	97	11699										
GPR85	54329	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr7	112724050	112724050	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0676691729323308	18	0.539713201460978	1.36467627545184	2.46691480562448	0.72067174096895	0.139785384641228	0.738095238095239	0	ccttccaaatcctgctagccAattggcagctgcctggccac	8	16	0	0	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	GPR85-91	NM_001146265	exon3	c.T727C	p.W243R	CTAGCCAATTGGC	.	102	7	99	0	.	0	0	0	0	0	G	112724050	A	G	112724050	3	3	59	1	0	0	0	0	1	0	0	0	6735	130	5	4	389	4	GPR85	7	112724050	Missense_Mutation	SNP	A	TCGA-P6-A5OH-01A-11D-A30A-10	11923997	112724050	46414613	98	11700										
KCND2	3751	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	119915231	119915231	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0676691729323308	18	0.539713201460978	1.36467627545184	2.46691480562448	0.72067174096895	0.139785384641228	0.738095238095239	0	cgagaacccccacaccagcaCgatggccctggtgttctact	9	16	1	1	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	KCND2-517	NM_012281	exon1	c.C545T	p.T182M	CCAGCACGATGGC	.	122	27	141	0	.	0	0	0	0	0	T	119915231	C	T	119915231	3	4	59	1	0	0	0	0	1	0	0	0	8040	536	19	1	547	1	KCND2	7	119915231	Missense_Mutation	SNP	C	TCGA-P6-A5OH-01A-11D-A30A-10	7191181	119915231	39223432	99	11701										
SSPO	23145	hgsc.bcm.edu	37	chr7	149476671	149476672	+	Silent	DNP	TG	TG	CT													0.0676691729323308	18	0.539713201460978	1.36467627545184	2.46691480562448	0.72067174096895	0.139785384641228	0.738095238095239	0	cccagggctgtgacagccccTggggctcatagacgcagatg					novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	TG	TG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	.	NM_198455	exon10	c.G1122T	.	GCCCCTGGGGCTC	.	313	0	180	0	.	0	0	0	0	0	CT	149476672	TG	CT	149476671	2	2	59	1	0	0	0	0	0	0	0	1	15226	1580	55	4		4	SSPO	7	149476671	Silent	DNP	TG	TCGA-P6-A5OH-01A-11D-A30A-10	29561440	149476671	9661992	100	11702										
GPR124	25960	broad.mit.edu	37	chr8	37686785	37686785	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0676691729323308	18	0.539713201460978	1.36467627545184	2.46691480562448	0.72067174096895	0.139785384641228	0.738095238095239	0	ctgtgtctctctagagatctCtccaacaaccggattggctg	9	12	3	1	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	GPR124-157	NM_032777	exon4	c.C417T	p.L139L	AGATCTCTCCAAC	.	79	17	57	2	.	0	0	0	0	0	T	37686785	C	T	37686785	2	4	59	1	0	0	0	0	0	0	0	1	6658	900	32	3		3	GPR124	8	37686785	Silent	SNP	C	TCGA-P6-A5OH-01A-11D-A30A-10		37686785	108677237	101	11703										
TGS1	96764	bcgsc.ca	37	chr8	56705325	56705325	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0676691729323308	18	0.539713201460978	1.36467627545184	2.46691480562448	0.72067174096895	0.139785384641228	0.738095238095239	0	tggttcccttctaggattcaAgtatggctcaggacaaaagt	10	8	3	0	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	TGS1-227	NM_024831	exon6	c.A1349T	p.K450M	GATTCAAGTATGG	.	55	4	60	0	.	0	0	0	0	0	T	56705325	A	T	56705325	3	4	59	1	0	0	0	0	1	0	0	0	15874	72	3	5	1371	5	TGS1	8	56705325	Missense_Mutation	SNP	A	TCGA-P6-A5OH-01A-11D-A30A-10	19018540	56705325	89658697	102	11704										
ZNF696	79943	hgsc.bcm.edu	37	chr8	144378868	144378868	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0676691729323308	18	0.539713201460978	1.36467627545184	2.46691480562448	0.72067174096895	0.139785384641228	0.738095238095239	0	ggcttcttccggcaccagcgActccacacgggcgagaagcc	12	16	1	1	rs7386259	byfrequency	TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	ZNF696-90	NM_030895	exon3	c.A1023G	p.R341R	CCAGCGACTCCAC	.	27	9	0	0	A|0.118;G|0.882	0	0	0	0	0	G	144378868	A	G	144378868	2	3	59	1	0	0	0	0	0	0	0	1	18136	262	10	4		4	ZNF696	8	144378868	Silent	SNP	A	TCGA-P6-A5OH-01A-11D-A30A-10	87673543	144378868	1985154	103	11705										
PLEC	5339	hgsc.bcm.edu	37	chr8	145001588	145001588	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0676691729323308	18	0.539713201460978	1.36467627545184	2.46691480562448	0.72067174096895	0.139785384641228	0.738095238095239	0	ccaagcccacctgctcctgcCgcagctgctcccgcacagcc	8	22	0	0	rs11136334	byfrequency	TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	PLEC-141	NM_201380	exon27	c.G4157A	p.R1386Q	TCCTGCCGCAGCT	.	35	11	1	0	C|0.707;T|0.293	0	0	0	0	0	T	145001588	C	T	145001588	3	4	59	1	0	0	0	0	1	0	0	0	12081	652	23	1	9921	1	PLEC	8	145001588	Missense_Mutation	SNP	C	TCGA-P6-A5OH-01A-11D-A30A-10	622720	145001588	1362434	104	11706										
PLEC	5339	hgsc.bcm.edu	37	chr8	145001784	145001784	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0676691729323308	18	0.539713201460978	1.36467627545184	2.46691480562448	0.72067174096895	0.139785384641228	0.738095238095239	0	agcctgccagcgctcaagcaActgggcgacccgctcccgcc	11	19	1	0	rs3135109	byfrequency	TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	PLEC-141	NM_201380	exon27	c.T3961C	p.L1321L	CAAGCAACTGGGC	.	23	5	0	0	G|0.246;A|0.754	0	0	0	0	0	G	145001784	A	G	145001784	2	3	59	1	0	0	0	0	0	0	0	1	12081	40	2	4		4	PLEC	8	145001784	Silent	SNP	A	TCGA-P6-A5OH-01A-11D-A30A-10	196	145001784	1362238	105	11707										
ZNF517	340385	hgsc.bcm.edu	37	chr8	146033347	146033347	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0676691729323308	18	0.539713201460978	1.36467627545184	2.46691480562448	0.72067174096895	0.139785384641228	0.738095238095239	0	gggtgcccaggacggcggcgTggggcagggcgccctgctcg	21	13	0	0	rs2976653		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	ZNF517-90	NM_213605	exon5	c.T1046C	p.V349A	GCGGCGTGGGGCA	.	10	10	0	0	G|0.992;C|0.006	0	0	0	0	0	C	146033347	T	C	146033347	3	2	59	1	0	0	0	0	1	0	0	0	17998	1696	59	4	1060	4	ZNF517	8	146033347	Missense_Mutation	SNP	T	TCGA-P6-A5OH-01A-11D-A30A-10	1031563	146033347	330675	106	11708										
TPD52L3	89882	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	6328653	6328653	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0676691729323308	18	0.539713201460978	1.36467627545184	2.46691480562448	0.72067174096895	0.139785384641228	0.738095238095239	0	atgaatcccactcgacttctGaactggaggatctgacagag	10	10	2	4	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	TPD52L3-68	NM_033516	exon1	c.G58C	p.E20Q	ACTTCTGAACTGG	.	85	15	83	0	.	0	0	0	0	0	C	6328653	G	C	6328653	3	2	59	1	0	0	0	0	1	0	0	0	16438	1291	45	3	60	3	TPD52L3	9	6328653	Missense_Mutation	SNP	G	TCGA-P6-A5OH-01A-11D-A30A-10		6328653	134884778	107	11709										
VPS13A	23230	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr9	79933239	79933241	+	In_Frame_Del	DEL	CTA	CTA	-													0.0676691729323308	18	0.539713201460978	1.36467627545184	2.46691480562448	0.72067174096895	0.139785384641228	0.738095238095239	0	cccagaagaaacggcttcttCtactgcacatttatgggaaa					novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	CTA	CTA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	VPS13A-161	NM_001018038	exon41	c.5045_5047del	p.1682_1683del	CTTCTTCTACTGC	.	126	21	149	0	.	0	0	0	0	0	-	79933241	CTA	-	79933239	7	5	59	1	0	1	0	1	0	0	0	0	17227	913	32	0	5207	0	VPS13A	9	79933239	In_Frame_Del	DEL	CTA	TCGA-P6-A5OH-01A-11D-A30A-10	73604586	79933239	61280192	108	11710										
UBQLN1	29979	broad.mit.edu;bcgsc.ca	37	chr9	86294747	86294747	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0676691729323308	18	0.539713201460978	1.36467627545184	2.46691480562448	0.72067174096895	0.139785384641228	0.738095238095239	0	atttctggatttctctgtatCaactgctgcatttgtggatt	8	7	3	0	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	UBQLN1-90	NM_053067	exon4	c.G654C	p.L218F	CTGTATCAACTGC	.	134	8	153	1	.	0	0	0	0	0	G	86294747	C	G	86294747	3	3	59	1	0	0	0	0	1	0	0	0	16934	825	29	3	1147	3	UBQLN1	9	86294747	Missense_Mutation	SNP	C	TCGA-P6-A5OH-01A-11D-A30A-10	6361508	86294747	54918684	109	11711										
RMI1	80010	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	86616405	86616405	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0676691729323308	18	0.539713201460978	1.36467627545184	2.46691480562448	0.72067174096895	0.139785384641228	0.738095238095239	0	cctccaggtacaaaaattttGatttatggaaatatatcttt	5	6	1	1	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	RMI1-90	NM_024945	exon3	c.G504C	p.L168F	AATTTTGATTTAT	.	52	7	57	0	.	0	0	0	0	0	C	86616405	G	C	86616405	3	2	59	1	0	0	0	0	1	0	0	0	13430	1281	45	3	506	3	RMI1	9	86616405	Missense_Mutation	SNP	G	TCGA-P6-A5OH-01A-11D-A30A-10	321658	86616405	54597026	110	11712										
FAM120A	23196	broad.mit.edu;ucsc.edu	37	chr9	96318860	96318860	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0676691729323308	18	0.539713201460978	1.36467627545184	2.46691480562448	0.72067174096895	0.139785384641228	0.738095238095239	0	aaagaccccactcattgaccTctgtgatggtcaggtatgct	9	11	3	3	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	FAM120A-90	NM_014612	exon13	c.T2471C	p.L824P	TTGACCTCTGTGA	.	75	9	62	1	.	0	0	0	0	0	C	96318860	T	C	96318860	3	2	59	1	0	0	0	0	1	0	0	0	5431	1551	54	4	2521	4	FAM120A	9	96318860	Missense_Mutation	SNP	T	TCGA-P6-A5OH-01A-11D-A30A-10	9702455	96318860	44894571	111	11713										
SVEP1	79987	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr9	113169657	113169657	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0676691729323308	18	0.539713201460978	1.36467627545184	2.46691480562448	0.72067174096895	0.139785384641228	0.738095238095239	0	atgtgtccaggtttacagctAtactgcacagcacttcccat	7	12	0	0	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	SVEP1-75	NM_153366	exon38	c.T8223C	p.Y2741Y	ACAGCTATACTGC	.	177	29	118	0	.	0	0	0	0	0	G	113169657	A	G	113169657	2	3	59	1	0	0	0	0	0	0	0	1	15457	456	16	4		4	SVEP1	9	113169657	Silent	SNP	A	TCGA-P6-A5OH-01A-11D-A30A-10	16850797	113169657	28043774	112	11714										
FPGS	2356	broad.mit.edu;bcgsc.ca	37	chr9	130572350	130572350	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0676691729323308	18	0.539713201460978	1.36467627545184	2.46691480562448	0.72067174096895	0.139785384641228	0.738095238095239	0	tgctcttcaatgctaccgggGaccgggacccggcggccctg	14	15	2	0	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	FPGS-90	NM_004957	exon13	c.G1252A	p.D418N	ACCGGGGACCGGG	.	275	57	114	1	.	0	0	0	0	0	A	130572350	G	A	130572350	3	1	59	1	0	0	0	0	1	0	0	0	6055	1174	41	3	1302	3	FPGS	9	130572350	Missense_Mutation	SNP	G	TCGA-P6-A5OH-01A-11D-A30A-10	17402693	130572350	10641081	113	11715										
COL5A1	1289	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr9	137704528	137704528	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0676691729323308	18	0.539713201460978	1.36467627545184	2.46691480562448	0.72067174096895	0.139785384641228	0.738095238095239	0	ccacaaggtcccccaggtggAataggaaaccctggtgcagt	12	12	0	0	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	COL5A1-524	NM_000093	exon48	c.A3822T	p.G1274G	AGGTGGAATAGGA	.	131	33	91	1	.	0	0	0	0	0	T	137704528	A	T	137704528	2	4	59	1	0	0	0	0	0	0	0	1	3702	233	9	5		5	COL5A1	9	137704528	Silent	SNP	A	TCGA-P6-A5OH-01A-11D-A30A-10	7132178	137704528	3508903	114	11716										
NOXA1	10811	hgsc.bcm.edu	37	chr9	140317999	140317999	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0676691729323308	18	0.539713201460978	1.36467627545184	2.46691480562448	0.72067174096895	0.139785384641228	0.738095238095239	0	gccatggcctctctgggggaCctggtgcgcgcctggcacct	15	15	1	0	rs112864733		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	NOXA1-90	NM_006647	exon1	c.C18G	p.D6E	GGGGGACCTGGTG	.	14	4	0	0	C|0.934;G|0.066	0	0	0	0	0	G	140317999	C	G	140317999	3	3	59	1	0	0	0	0	1	0	0	0	10589	506	18	3	20	3	NOXA1	9	140317999	Missense_Mutation	SNP	C	TCGA-P6-A5OH-01A-11D-A30A-10	2613471	140317999	895432	115	11717										
GPRIN2	9721	hgsc.bcm.edu	37	chr10	47000217	47000217	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0676691729323308	18	0.539713201460978	1.36467627545184	2.46691480562448	0.72067174096895	0.139785384641228	0.738095238095239	0	tgtcatgcagtccctgcggcGccccagctgctgcggctgct	13	16	1	0	rs72780221	byfrequency	TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	GPRIN2-90	NM_014696	exon3	c.G1337A	p.R446H	TGCGGCGCCCCAG	.	35	10	0	0	G|0.901;A|0.099	0	0	0	0	0	A	47000217	G	A	47000217	3	1	59	1	0	0	0	0	1	0	0	0	6751	1087	38	1	1339	1	GPRIN2	10	47000217	Missense_Mutation	SNP	G	TCGA-P6-A5OH-01A-11D-A30A-10		47000217	88534530	116	11718										
ARHGAP22	58504	hgsc.bcm.edu	37	chr10	49659006	49659006	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0676691729323308	18	0.539713201460978	1.36467627545184	2.46691480562448	0.72067174096895	0.139785384641228	0.738095238095239	0	gggaagaggtcctgtgcgcgGgcaggccggggccgccgggc	22	12	0	1	rs80345791		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	ARHGAP22-228	NM_001256024	exon9	c.C1214T	p.P405L	TGCGCGGGCAGGC	.	34	14	1	0	G|0.987;A|0.013	0	0	0	0	0	A	49659006	G	A	49659006	3	1	59	1	0	0	0	0	1	0	0	0	872	1232	43	3	938	3	ARHGAP22	10	49659006	Missense_Mutation	SNP	G	TCGA-P6-A5OH-01A-11D-A30A-10	2658789	49659006	85875741	117	11719										
PCDH15	65217	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr10	55582342	55582342	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0676691729323308	18	0.539713201460978	1.36467627545184	2.46691480562448	0.72067174096895	0.139785384641228	0.738095238095239	0	acatacaaataggtgtctctCtcctagagagtgaagaatgt	9	7	2	3	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	PCDH15-193	NM_001142763	exon35	c.G5165T	p.R1722I	GTCTCTCTCCTAG	.	43	11	89	0	.	0	0	0	0	0	A	55582342	C	A	55582342	3	1	59	1	0	0	0	0	1	0	0	0	11540	913	32	3	2333	3	PCDH15	10	55582342	Missense_Mutation	SNP	C	TCGA-P6-A5OH-01A-11D-A30A-10	5923336	55582342	79952405	118	11720										
SPOCK2	9806	hgsc.bcm.edu	37	chr10	73848075	73848075	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0676691729323308	18	0.539713201460978	1.36467627545184	2.46691480562448	0.72067174096895	0.139785384641228	0.738095238095239	0	agcaccagccgcccgcagccCggggcgcgcatcgtggtctg	15	17	1	0	rs2306324		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	SPOCK2-90	NM_001134434	exon2	c.G12A	p.P4P	GCAGCCCGGGGCG	.	10	5	0	0	C|0.870;T|0.130	0	0	0	0	0	T	73848075	C	T	73848075	2	4	59	1	0	0	0	0	0	0	0	1	15117	639	23	1		1	SPOCK2	10	73848075	Silent	SNP	C	TCGA-P6-A5OH-01A-11D-A30A-10	18265733	73848075	61686672	119	11721										
OIT3	170392	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	74684374	74684374	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0676691729323308	18	0.539713201460978	1.36467627545184	2.46691480562448	0.72067174096895	0.139785384641228	0.738095238095239	0	ccacctccaagatcgacgagGtcctgaaatactacctcatc	6	15	1	2	rs139078371		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	OIT3-70	NM_152635	exon7	c.G1339A	p.V447I	GACGAGGTCCTGA	.	214	40	152	0	G|1.000;A|0.000	0	0	0	0	0	A	74684374	G	A	74684374	3	1	59	1	0	0	0	0	1	0	0	0	10878	1261	44	3	1365	3	OIT3	10	74684374	Missense_Mutation	SNP	G	TCGA-P6-A5OH-01A-11D-A30A-10	836299	74684374	60850373	120	11722										
C10orf11	83938	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	77542776	77542776	+	Nonsense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0676691729323308	18	0.539713201460978	1.36467627545184	2.46691480562448	0.72067174096895	0.139785384641228	0.738095238095239	0	gcggcaatcattcttcaaatAaaaggttagccagacaggac	9	9	3	1	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	C10orf11-90	NM_032024	exon1	c.A43T	p.K15X	TCAAATAAAAGGT	.	110	17	102	0	.	0	0	0	0	0	T	77542776	A	T	77542776	4	4	59	1	0	0	0	0	0	1	0	0	1586	363	13	5	45	5	C10orf11	10	77542776	Nonsense_Mutation	SNP	A	TCGA-P6-A5OH-01A-11D-A30A-10	2858402	77542776	57991971	121	11723										
TBC1D12	23232	hgsc.bcm.edu	37	chr10	96163039	96163039	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0676691729323308	18	0.539713201460978	1.36467627545184	2.46691480562448	0.72067174096895	0.139785384641228	0.738095238095239	0	agcgactcgggggacagcccCgccagcagctgcagcagtag	15	14	0	0	rs2477534	byfrequency	TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	TBC1D12-68	NM_015188	exon1	c.C669G	p.P223P	CAGCCCCGCCAGC	.	33	17	1	0	C|0.339;G|0.661	0	0	0	0	0	G	96163039	C	G	96163039	2	3	59	1	0	0	0	0	0	0	0	1	15638	639	23	2		2	TBC1D12	10	96163039	Silent	SNP	C	TCGA-P6-A5OH-01A-11D-A30A-10	18620263	96163039	39371708	122	11724										
LZTS2	84445	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr10	102766836	102766836	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0676691729323308	18	0.539713201460978	1.36467627545184	2.46691480562448	0.72067174096895	0.139785384641228	0.738095238095239	0	agctgcagcagctcagcctgGagctggaggcccgggagctc	16	13	1	0	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	LZTS2-155	NM_032429	exon5	c.G1921A	p.E641K	AGCCTGGAGCTGG	.	247	44	84	1	.	0	0	0	0	0	A	102766836	G	A	102766836	3	1	59	1	0	0	0	0	1	0	0	0	9167	1175	41	3	1935	3	LZTS2	10	102766836	Missense_Mutation	SNP	G	TCGA-P6-A5OH-01A-11D-A30A-10	6603797	102766836	32767911	123	11725										
NFKB2	4791	hgsc.bcm.edu	37	chr10	104159196	104159196	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0676691729323308	18	0.539713201460978	1.36467627545184	2.46691480562448	0.72067174096895	0.139785384641228	0.738095238095239	0	ggggaggaagccgcggagccAagcgccccctccaggacccc	15	17	0	0	rs4919633	byfrequency	TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	NFKB2-522	NM_001077494	exon13	c.A1269G	p.P423P	GGAGCCAAGCGCC	.	16	16	0	0	A|0.009;G|0.991	0	0	0	0	0	G	104159196	A	G	104159196	2	3	59	1	0	0	0	0	0	0	0	1	10405	117	5	4		4	NFKB2	10	104159196	Silent	SNP	A	TCGA-P6-A5OH-01A-11D-A30A-10	1392360	104159196	31375551	124	11726										
CDHR5	53841	broad.mit.edu;bcgsc.ca	37	chr11	624261	624263	+	In_Frame_Del	DEL	CTC	CTC	-													0.0676691729323308	18	0.539713201460978	1.36467627545184	2.46691480562448	0.72067174096895	0.139785384641228	0.738095238095239	0	tgagcctcaagcagtgacttCtcctgtggatgtagacaggt					novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	CDHR5-90	NM_031264	exon3	c.262_264del	p.88_88del	TGACTTCTCCTGT	.	340	38	121	0	.	0	0	0	0	0	-	624263	CTC	-	624261	7	5	59	1	0	1	0	1	0	0	0	0	3128	912	32	0	2325	0	CDHR5	11	624261	In_Frame_Del	DEL	CTC	TCGA-P6-A5OH-01A-11D-A30A-10		624261	134382255	125	11727										
MUC2	4583	broad.mit.edu	37	chr11	1092947	1092947	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0676691729323308	18	0.539713201460978	1.36467627545184	2.46691480562448	0.72067174096895	0.139785384641228	0.738095238095239	0	atcgacacccatcaccaccaCcactacggtgaccccaaccc	4	21	1	1	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	MUC2-90	NM_002457	exon30	c.C4766A	p.T1589N	CCACCACCACTAC	.	186	5	114	1	.	0	0	0	0	0	A	1092947	C	A	1092947	3	1	59	1	0	0	0	0	1	0	0	0	10003	507	18	3	4884	3	MUC2	11	1092947	Missense_Mutation	SNP	C	TCGA-P6-A5OH-01A-11D-A30A-10	468686	1092947	133913569	126	11728										
OR52D1	390066	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	5510738	5510738	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0676691729323308	18	0.539713201460978	1.36467627545184	2.46691480562448	0.72067174096895	0.139785384641228	0.738095238095239	0	ccttcctcacccaccgctttGgtcaccacgaagtccccaag	6	19	2	0	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	OR52D1-68	NM_001005163	exon1	c.G802C	p.G268R	CGCTTTGGTCACC	.	123	27	122	0	.	0	0	0	0	0	C	5510738	G	C	5510738	3	2	59	1	0	0	0	0	1	0	0	0	11143	1348	47	3	804	3	OR52D1	11	5510738	Missense_Mutation	SNP	G	TCGA-P6-A5OH-01A-11D-A30A-10	4417791	5510738	129495778	127	11729										
DNHD1	144132	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	6579406	6579406	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0676691729323308	18	0.539713201460978	1.36467627545184	2.46691480562448	0.72067174096895	0.139785384641228	0.738095238095239	0	ttcatcgcctcctggccctgGcaacctcaggcagtttccct	8	17	2	0	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	DNHD1-24	NM_144666	exon25	c.G8881A	p.A2961T	GCCCTGGCAACCT	.	242	45	144	1	.	0	0	0	0	0	A	6579406	G	A	6579406	3	1	59	1	0	0	0	0	1	0	0	0	4679	1203	42	3	8980	3	DNHD1	11	6579406	Missense_Mutation	SNP	G	TCGA-P6-A5OH-01A-11D-A30A-10	1068668	6579406	128427110	128	11730										
FANCF	2188	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	22646416	22646416	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0676691729323308	18	0.539713201460978	1.36467627545184	2.46691480562448	0.72067174096895	0.139785384641228	0.738095238095239	0	gaggtggaggggcctgacagAggctttgaaacctattgtgc	16	7	0	3	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	FANCF-1083	NM_022725	exon1	c.T941C	p.L314P	TGACAGAGGCTTT	.	96	10	93	0	.	0	0	0	0	0	G	22646416	A	G	22646416	3	3	59	1	0	0	0	0	1	0	0	0	5686	304	11	4	187	4	FANCF	11	22646416	Missense_Mutation	SNP	A	TCGA-P6-A5OH-01A-11D-A30A-10	16067010	22646416	112360100	129	11731										
PRDM11	56981	broad.mit.edu	37	chr11	45204461	45204461	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0676691729323308	18	0.539713201460978	1.36467627545184	2.46691480562448	0.72067174096895	0.139785384641228	0.738095238095239	0	gatgaatgcccaaaccatggCcccccggtgtttgtgtctga	11	12	1	2	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	PRDM11-91	NM_001256695	exon4	c.C273A	p.G91G	CCATGGCCCCCCG	.	113	5	80	0	.	0	0	0	0	0	A	45204461	C	A	45204461	2	1	59	1	0	0	0	0	0	0	0	1	12484	726	26	3		3	PRDM11	11	45204461	Silent	SNP	C	TCGA-P6-A5OH-01A-11D-A30A-10	22558045	45204461	89802055	130	11732										
DGKZ	8525	hgsc.bcm.edu	37	chr11	46387868	46387868	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0676691729323308	18	0.539713201460978	1.36467627545184	2.46691480562448	0.72067174096895	0.139785384641228	0.738095238095239	0	aggccctggagaggggcagcAgcggcccagcagcgtggggc	20	12	0	1	rs1317826	byfrequency	TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	DGKZ-676	NM_001105540	exon2	c.A62G	p.Q21R	GGCAGCAGCGGCC	.	4	4	0	0	A|0.608;G|0.392	0	0	0	0	0	G	46387868	A	G	46387868	3	3	59	1	0	0	0	0	1	0	0	0	4485	188	7	4	508	4	DGKZ	11	46387868	Missense_Mutation	SNP	A	TCGA-P6-A5OH-01A-11D-A30A-10	1183407	46387868	88618648	131	11733										
DGKZ	8525	hgsc.bcm.edu	37	chr11	46387906	46387906	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0676691729323308	18	0.539713201460978	1.36467627545184	2.46691480562448	0.72067174096895	0.139785384641228	0.738095238095239	0	ggctgcccacaggcaaggccCggcgtcgctcccccgctggg	15	18	0	0	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	DGKZ-676	NM_001105540	exon2	c.C100T	p.R34W	AAGGCCCGGCGTC	.	5	5	0	0	.	0	0	0	0	0	T	46387906	C	T	46387906	3	4	59	1	0	0	0	0	1	0	0	0	4485	643	23	1	546	1	DGKZ	11	46387906	Missense_Mutation	SNP	C	TCGA-P6-A5OH-01A-11D-A30A-10	38	46387906	88618610	132	11734										
DDB2	1643	broad.mit.edu	37	chr11	47256376	47256376	+	Frame_Shift_Del	DEL	C	C	-													0.0676691729323308	18	0.539713201460978	1.36467627545184	2.46691480562448	0.72067174096895	0.139785384641228	0.738095238095239	0	aacccatgctgtgattggttCctggccacagcctccgtaga					novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	DDB2-971	NM_000107	exon6	c.771delC	p.F257fs	TTGGTTCCTGGCC	.	232	21	107	0	.	0	0	0	0	0	-	47256376	C	-	47256376	7	5	59	1	0	1	0	1	0	0	0	0	4330	854	30	0	793	0	DDB2	11	47256376	Frame_Shift_Del	DEL	C	TCGA-P6-A5OH-01A-11D-A30A-10	868470	47256376	87750140	133	11735										
OR5M1	390168	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	56380625	56380625	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0676691729323308	18	0.539713201460978	1.36467627545184	2.46691480562448	0.72067174096895	0.139785384641228	0.738095238095239	0	gctacatagcgatccaatgcCattgaagcaaggatgtaaaa	9	8	0	1	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	OR5M1-94	NM_001004740	exon1	c.G354A	p.M118I	CAATGCCATTGAA	.	362	74	350	0	.	0	0	0	0	0	T	56380625	C	T	56380625	3	4	59	1	0	0	0	0	1	0	0	0	11201	594	21	3	597	3	OR5M1	11	56380625	Missense_Mutation	SNP	C	TCGA-P6-A5OH-01A-11D-A30A-10	9124249	56380625	78625891	134	11736										
OR10Q1	219960	broad.mit.edu;bcgsc.ca	37	chr11	57995729	57995729	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0676691729323308	18	0.539713201460978	1.36467627545184	2.46691480562448	0.72067174096895	0.139785384641228	0.738095238095239	0	ggtcagcacgaggatgctcaCgacatagaggacagcctggt	14	10	2	1	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	OR10Q1-70	NM_001004471	exon1	c.G619A	p.V207M	TGCTCACGACATA	.	277	12	276	0	.	0	0	0	0	0	T	57995729	C	T	57995729	3	4	59	1	0	0	0	0	1	0	0	0	10945	536	19	1	344	1	OR10Q1	11	57995729	Missense_Mutation	SNP	C	TCGA-P6-A5OH-01A-11D-A30A-10	1615104	57995729	77010787	135	11737										
SYT7	9066	broad.mit.edu;bcgsc.ca	37	chr11	61291923	61291923	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0676691729323308	18	0.539713201460978	1.36467627545184	2.46691480562448	0.72067174096895	0.139785384641228	0.738095238095239	0	gggggatggacacctccccaAtggggtcgttgcggctgaag	17	10	0	1	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	SYT7-94	NM_001252065	exon7	c.T929C	p.I310T	TCCCCAATGGGGT	.	272	11	169	0	.	0	0	0	0	0	G	61291923	A	G	61291923	3	3	59	1	0	0	0	0	1	0	0	0	15516	101	4	4	523	4	SYT7	11	61291923	Missense_Mutation	SNP	A	TCGA-P6-A5OH-01A-11D-A30A-10	3296194	61291923	73714593	136	11738										
INCENP	3619	hgsc.bcm.edu	37	chr11	61914282	61914282	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0676691729323308	18	0.539713201460978	1.36467627545184	2.46691480562448	0.72067174096895	0.139785384641228	0.738095238095239	0	cgcgagcaggagcggcgcgaGcaggagcggcgggagcagga	22	10	0	0	rs113981632		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	INCENP-227	NM_001040694	exon15	c.G2112A	p.E704E	GCGCGAGCAGGAG	.	9	5	1	0	A|0.035;G|0.965	0	0	0	0	0	A	61914282	G	A	61914282	2	1	59	1	0	0	0	0	0	0	0	1	7754	962	34	3		3	INCENP	11	61914282	Silent	SNP	G	TCGA-P6-A5OH-01A-11D-A30A-10	622359	61914282	73092234	137	11739										
TM7SF2	7108	hgsc.bcm.edu	37	chr11	64880090	64880090	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0676691729323308	18	0.539713201460978	1.36467627545184	2.46691480562448	0.72067174096895	0.139785384641228	0.738095238095239	0	ggtccacccgcgtccctgccGgggctggaggtgctgtggag	18	13	0	0	rs4930284		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	TM7SF2-91	NM_003273	exon2	c.G156C	p.P52P	CCTGCCGGGGCTG	.	6	6	0	0	G|0.005;C|0.995	0	0	0	0	0	C	64880090	G	C	64880090	2	2	59	1	0	0	0	0	0	0	0	1	16011	1103	39	2		2	TM7SF2	11	64880090	Silent	SNP	G	TCGA-P6-A5OH-01A-11D-A30A-10	2965808	64880090	70126426	138	11740										
PCNXL3	399909	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	65386303	65386303	+	Silent	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.0676691729323308	18	0.539713201460978	1.36467627545184	2.46691480562448	0.72067174096895	0.139785384641228	0.738095238095239	0	cggccatatgggacccagcgGacgcctagtaccgccagcgc	13	16	0	0	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	PCNXL3-46	NM_032223	exon6	c.G1470C	p.R490R	CCAGCGGACGCCT	.	34	12	18	0	.	0	0	0	0	0	C	65386303	G	C	65386303	2	2	59	1	0	0	0	0	0	0	0	1	11622	1161	41	3		3	PCNXL3	11	65386303	Silent	SNP	G	TCGA-P6-A5OH-01A-11D-A30A-10	506213	65386303	69620213	139	11741										
SPTBN2	6712	broad.mit.edu	37	chr11	66461607	66461608	+	Splice_Site	DEL	CA	CA	-													0.0676691729323308	18	0.539713201460978	1.36467627545184	2.46691480562448	0.72067174096895	0.139785384641228	0.738095238095239	0	cgtccttggccccagtgactCacaatctcatcttccacatc					novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	SPTBN2-155	.	.	.	.	GTGACTCACAATC	.	18	8	11	0	.	0	0	0	0	0	-	66461608	CA	-	66461607	8	5	59	1	0	1	0	1	0	0	1	0	15157	841	29	0		0	SPTBN2	11	66461607	Splice_Site	DEL	CA	TCGA-P6-A5OH-01A-11D-A30A-10	1075304	66461607	68544909	140	11742										
LRRC32	2615	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	76370747	76370747	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0676691729323308	18	0.539713201460978	1.36467627545184	2.46691480562448	0.72067174096895	0.139785384641228	0.738095238095239	0	accagtatgaaggtgaggatGatgatgaggttgatgttctt	14	3	1	6	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	LRRC32-90	NM_005512	exon3	c.C1890A	p.I630I	GAGGATGATGATG	.	108	16	95	0	.	0	0	0	0	0	T	76370747	G	T	76370747	2	4	59	1	0	0	0	0	0	0	0	1	9014	1280	45	3		3	LRRC32	11	76370747	Silent	SNP	G	TCGA-P6-A5OH-01A-11D-A30A-10	9909140	76370747	58635769	141	11743										
TMEM135	65084	broad.mit.edu	37	chr11	86749164	86749164	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0676691729323308	18	0.539713201460978	1.36467627545184	2.46691480562448	0.72067174096895	0.139785384641228	0.738095238095239	0	gcacccttcctgccgggtctCcttcctgcagatcaccgggg	11	17	2	1	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	TMEM135-514	NM_022918	exon1	c.C77T	p.S26F	GGGTCTCCTTCCT	.	98	5	98	1	.	0	0	0	0	0	T	86749164	C	T	86749164	3	4	59	1	0	0	0	0	1	0	0	0	16088	855	30	3	79	3	TMEM135	11	86749164	Missense_Mutation	SNP	C	TCGA-P6-A5OH-01A-11D-A30A-10	10378417	86749164	48257352	142	11744										
FAT3	120114	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	92624186	92624186	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0676691729323308	18	0.539713201460978	1.36467627545184	2.46691480562448	0.72067174096895	0.139785384641228	0.738095238095239	0	tgcggctttgacgattccgaAgtagccatgagtgactacga	12	9	0	3	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	FAT3-73	NM_001008781	exon25	c.A13581T	p.E4527D	TTCCGAAGTAGCC	.	145	40	150	2	.	0	0	0	0	0	T	92624186	A	T	92624186	3	4	59	1	0	0	0	0	1	0	0	0	5710	69	3	5	13679	5	FAT3	11	92624186	Missense_Mutation	SNP	A	TCGA-P6-A5OH-01A-11D-A30A-10	5875022	92624186	42382330	143	11745										
BACE1	23621	hgsc.bcm.edu	37	chr11	117186506	117186506	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0676691729323308	18	0.539713201460978	1.36467627545184	2.46691480562448	0.72067174096895	0.139785384641228	0.738095238095239	0	aggagccagggcagggcttgGgccatggtgggccccggcct	19	12	0	0	rs28917234	byfrequency	TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	BACE1-91	NM_138972	exon1	c.C6T	p.A2A	GGCTTGGGCCATG	.	16	6	0	0	G|0.979;A|0.021	0	0	0	0	0	A	117186506	G	A	117186506	2	1	59	1	0	0	0	0	0	0	0	1	1282	1219	43	3		3	BACE1	11	117186506	Silent	SNP	G	TCGA-P6-A5OH-01A-11D-A30A-10	24562320	117186506	17820010	144	11746										
PDZD3	79849	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	119057343	119057343	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0676691729323308	18	0.539713201460978	1.36467627545184	2.46691480562448	0.72067174096895	0.139785384641228	0.738095238095239	0	agcgccagggtcttcaggaaGgagacaggatcctggcggtg	17	9	2	1	rs141570563	alternate_allele	TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	PDZD3-153	NM_001168468	exon4	c.G274T	p.G92X	CAGGAAGGAGACA	.	210	57	130	0	G|1.000;A|0.000	0	0	0	0	0	T	119057343	G	T	119057343	4	4	59	1	0	0	0	0	0	1	0	0	11731	1001	35	3	288	3	PDZD3	11	119057343	Nonsense_Mutation	SNP	G	TCGA-P6-A5OH-01A-11D-A30A-10	1870837	119057343	15949173	145	11747										
B3GAT1	27087	hgsc.bcm.edu	37	chr11	134253805	134253805	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0676691729323308	18	0.539713201460978	1.36467627545184	2.46691480562448	0.72067174096895	0.139785384641228	0.738095238095239	0	gtgtcgcgcagcaggcgcgcGgtcagcggcgtccggcgcgg	20	14	1	0	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	B3GAT1-91	NM_054025	exon3	c.C390T	p.T130T	GCGCGCGGTCAGC	.	21	9	1	0	.	0	0	0	0	0	A	134253805	G	A	134253805	2	1	59	1	0	0	0	0	0	0	0	1	1254	1103	39	1		1	B3GAT1	11	134253805	Silent	SNP	G	TCGA-P6-A5OH-01A-11D-A30A-10	15196462	134253805	752711	146	11748										
FKBP4	2288	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	2912330	2912330	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0676691729323308	18	0.539713201460978	1.36467627545184	2.46691480562448	0.72067174096895	0.139785384641228	0.738095238095239	0	cttgcaggccaaggcagaggCttcctcaggagaccatccca	11	14	1	2	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	FKBP4-226	NM_002014	exon10	c.C1286G	p.A429G	CAGAGGCTTCCTC	.	64	17	36	0	.	0	0	0	0	0	G	2912330	C	G	2912330	3	3	59	1	0	0	0	0	1	0	0	0	5929	797	28	3	1324	3	FKBP4	12	2912330	Missense_Mutation	SNP	C	TCGA-P6-A5OH-01A-11D-A30A-10		2912330	130939565	147	11749										
C1S	716	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	7177252	7177252	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0676691729323308	18	0.539713201460978	1.36467627545184	2.46691480562448	0.72067174096895	0.139785384641228	0.738095238095239	0	cttcccctggcaagtcttctTtgacaacccatgggctggtg	10	13	2	1	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	C1S-91	NM_201442	exon12	c.T1364A	p.F455Y	TCTTCTTTGACAA	.	100	23	84	0	.	0	0	0	0	0	A	7177252	T	A	7177252	3	1	59	1	0	0	0	0	1	0	0	0	1980	1841	64	5	1406	5	C1S	12	7177252	Missense_Mutation	SNP	T	TCGA-P6-A5OH-01A-11D-A30A-10	4264922	7177252	126674643	148	11750										
IPO8	10526	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	30783824	30783824	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0676691729323308	18	0.539713201460978	1.36467627545184	2.46691480562448	0.72067174096895	0.139785384641228	0.738095238095239	0	ctgggcacagtcccaaaattAaatgcggagaggactccttt	10	10	0	1	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	IPO8-227	NM_006390	exon25	c.T3084A	p.F1028L	AAAATTAAATGCG	.	87	21	116	0	.	0	0	0	0	0	T	30783824	A	T	30783824	3	4	59	1	0	0	0	0	1	0	0	0	7819	359	13	5	33	5	IPO8	12	30783824	Missense_Mutation	SNP	A	TCGA-P6-A5OH-01A-11D-A30A-10	23606572	30783824	103068071	149	11751										
CNTN1	1272	broad.mit.edu	37	chr12	41419057	41419057	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0676691729323308	18	0.539713201460978	1.36467627545184	2.46691480562448	0.72067174096895	0.139785384641228	0.738095238095239	0	accttctgccagacacccagTattttatagaagtcggggcc	9	12	1	2	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	CNTN1-1149	NM_001843	exon21	c.T2629G	p.Y877D	ACCCAGTATTTTA	.	70	4	110	1	.	0	0	0	0	0	G	41419057	T	G	41419057	3	3	59	1	0	0	0	0	1	0	0	0	3646	1638	57	5	2707	5	CNTN1	12	41419057	Missense_Mutation	SNP	T	TCGA-P6-A5OH-01A-11D-A30A-10	10635233	41419057	92432838	150	11752										
LETMD1	25875	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	51451824	51451824	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0676691729323308	18	0.539713201460978	1.36467627545184	2.46691480562448	0.72067174096895	0.139785384641228	0.738095238095239	0	gagtggtataggcttgttatCtccgtggcctgaattctacg	12	8	2	1	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	LETMD1-90	NM_001243689	exon8	c.C964G	p.L322V	TGTTATCTCCGTG	.	118	23	73	0	.	0	0	0	0	0	G	51451824	C	G	51451824	3	3	59	1	0	0	0	0	1	0	0	0	8758	913	32	3	955	3	LETMD1	12	51451824	Missense_Mutation	SNP	C	TCGA-P6-A5OH-01A-11D-A30A-10	10032767	51451824	82400071	151	11753										
LRP1	4035	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr12	57594933	57594933	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0676691729323308	18	0.539713201460978	1.36467627545184	2.46691480562448	0.72067174096895	0.139785384641228	0.738095238095239	0	atggggaggatgagagggacTgccgtgagtgtcagaggtgg	21	4	1	3	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	LRP1-596	NM_002332	exon65	c.T10342A	p.C3448S	AGGGACTGCCGTG	.	148	12	82	0	.	0	0	0	0	0	A	57594933	T	A	57594933	3	1	59	1	0	0	0	0	1	0	0	0	8978	1580	55	5	10600	5	LRP1	12	57594933	Missense_Mutation	SNP	T	TCGA-P6-A5OH-01A-11D-A30A-10	6143109	57594933	76256962	152	11754										
SLC26A10	65012	broad.mit.edu	37	chr12	58015619	58015619	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0676691729323308	18	0.539713201460978	1.36467627545184	2.46691480562448	0.72067174096895	0.139785384641228	0.738095238095239	0	acgccgatcccgggggaagtCgtcttggtgaggatggccgt	17	10	1	1	rs184174469		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	SLC26A10-531	NM_133489	exon4	c.C702T	p.V234V	GGAAGTCGTCTTG	.	213	4	58	0	C|0.994;T|0.006	0	0	0	0	0	T	58015619	C	T	58015619	2	4	59	1	0	0	0	0	0	0	0	1	14550	871	31	1		1	SLC26A10	12	58015619	Silent	SNP	C	TCGA-P6-A5OH-01A-11D-A30A-10	420686	58015619	75836276	153	11755										
CAND1	55832	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	67691276	67691276	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0676691729323308	18	0.539713201460978	1.36467627545184	2.46691480562448	0.72067174096895	0.139785384641228	0.738095238095239	0	tagacttgcagtgaggaaaaGaaccattatcgctcttggcc	10	9	1	3	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	CAND1-516	NM_018448	exon5	c.G581C	p.R194T	GGAAAAGAACCAT	.	102	20	112	0	.	0	0	0	0	0	C	67691276	G	C	67691276	3	2	59	1	0	0	0	0	1	0	0	0	2621	942	33	3	599	3	CAND1	12	67691276	Missense_Mutation	SNP	G	TCGA-P6-A5OH-01A-11D-A30A-10	9675657	67691276	66160619	154	11756										
AMDHD1	144193	hgsc.bcm.edu	37	chr12	96337183	96337183	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0676691729323308	18	0.539713201460978	1.36467627545184	2.46691480562448	0.72067174096895	0.139785384641228	0.738095238095239	0	cggcgcgaggcgacatggcaAgcggccacagcctcctgctg	15	15	0	0	rs7955450	byfrequency	TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	AMDHD1-90	NM_152435	exon1	c.A7G	p.S3G	ATGGCAAGCGGCC	.	13	13	0	0	A|0.273;G|0.727	0	0	0	0	0	G	96337183	A	G	96337183	3	3	59	1	0	0	0	0	1	0	0	0	567	72	3	4	9	4	AMDHD1	12	96337183	Missense_Mutation	SNP	A	TCGA-P6-A5OH-01A-11D-A30A-10	28645907	96337183	37514712	155	11757										
AMDHD1	144193	hgsc.bcm.edu	37	chr12	96337225	96337225	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0676691729323308	18	0.539713201460978	1.36467627545184	2.46691480562448	0.72067174096895	0.139785384641228	0.738095238095239	0	agaacgcgcagcaagtggtgCtggtgtgcgcccgcggcgag	18	11	0	1	rs1436121	byfrequency	TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	AMDHD1-90	NM_152435	exon1	c.C49T	p.L17L	GTGGTGCTGGTGT	.	21	18	0	0	C|0.752;T|0.248	0	0	0	0	0	T	96337225	C	T	96337225	2	4	59	1	0	0	0	0	0	0	0	1	567	796	28	3		3	AMDHD1	12	96337225	Silent	SNP	C	TCGA-P6-A5OH-01A-11D-A30A-10	42	96337225	37514670	156	11758										
PAH	5053	broad.mit.edu;bcgsc.ca	37	chr12	103306614	103306614	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0676691729323308	18	0.539713201460978	1.36467627545184	2.46691480562448	0.72067174096895	0.139785384641228	0.738095238095239	0	aatgcaccaacttcttctttGagtgagaagatcagtgatat	8	7	3	4	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	PAH-72	NM_000277	exon2	c.C123A	p.L41L	TTCTTTGAGTGAG	.	232	10	230	3	.	0	0	0	0	0	T	103306614	G	T	103306614	2	4	59	1	0	0	0	0	0	0	0	1	11423	1277	45	3		3	PAH	12	103306614	Silent	SNP	G	TCGA-P6-A5OH-01A-11D-A30A-10	6969389	103306614	30545281	157	11759										
FAM109A	144717	hgsc.bcm.edu	37	chr12	111800570	111800570	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0676691729323308	18	0.539713201460978	1.36467627545184	2.46691480562448	0.72067174096895	0.139785384641228	0.738095238095239	0	gcagccgggcgaagggggccAtgtccaggggcccgtggggt	21	11	0	0	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	FAM109A-90	NM_001177996	exon4	c.T701C	p.M234T	GGGGCCATGTCCA	.	23	10	1	0	.	0	0	0	0	0	G	111800570	A	G	111800570	3	3	59	1	0	0	0	0	1	0	0	0	5410	217	8	4	91	4	FAM109A	12	111800570	Missense_Mutation	SNP	A	TCGA-P6-A5OH-01A-11D-A30A-10	8493956	111800570	22051325	158	11760										
RNFT2	84900	hgsc.bcm.edu	37	chr12	117187907	117187907	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0676691729323308	18	0.539713201460978	1.36467627545184	2.46691480562448	0.72067174096895	0.139785384641228	0.738095238095239	0	caccgccagccccaccaccaTttccaccatggcggccaccg	7	22	0	0	rs111256849	byfrequency	TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	.	NM_001109903	exon4	c.T345C	p.H115H	CCACCATTTCCAC	.	19	14	1	0	T|0.767;C|0.233	0	0	0	0	0	C	117187907	T	C	117187907	2	2	59	1	0	0	0	0	0	0	0	1	13537	1490	52	4		4	RNFT2	12	117187907	Silent	SNP	T	TCGA-P6-A5OH-01A-11D-A30A-10	5387337	117187907	16663988	159	11761										
RFC5	5985	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	118454660	118454660	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0676691729323308	18	0.539713201460978	1.36467627545184	2.46691480562448	0.72067174096895	0.139785384641228	0.738095238095239	0	cctcagcactcaagcagcagGagcagcccgcggcgaccaag	12	16	2	0	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	RFC5-227	NM_007370	exon1	c.G28A	p.E10K	CAGCAGGAGCAGC	.	176	43	103	1	.	0	0	0	0	0	A	118454660	G	A	118454660	3	1	59	1	0	0	0	0	1	0	0	0	13283	1175	41	3	30	3	RFC5	12	118454660	Missense_Mutation	SNP	G	TCGA-P6-A5OH-01A-11D-A30A-10	1266753	118454660	15397235	160	11762										
STX2	2054	broad.mit.edu	37	chr12	131285773	131285773	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0676691729323308	18	0.539713201460978	1.36467627545184	2.46691480562448	0.72067174096895	0.139785384641228	0.738095238095239	0	ctggtctccagcttcatgatGtccttgtgacgtgactcgat	10	11	2	3	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	STX2-90	NM_194356	exon8	c.C600T	p.D200D	CATGATGTCCTTG	.	141	5	100	0	.	0	0	0	0	0	A	131285773	G	A	131285773	2	1	59	1	0	0	0	0	0	0	0	1	15382	1368	48	3		3	STX2	12	131285773	Silent	SNP	G	TCGA-P6-A5OH-01A-11D-A30A-10	12831113	131285773	2566122	161	11763										
MTUS2	23281	bcgsc.ca	37	chr13	29599410	29599410	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0676691729323308	18	0.539713201460978	1.36467627545184	2.46691480562448	0.72067174096895	0.139785384641228	0.738095238095239	0	tgcagtcgggagcctgactcCgcagcatccacagcctctat	10	15	1	1	rs116224145	byfrequency	TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	MTUS2-218	NM_001033602	exon1	c.C605T	p.P202L	TGACTCCGCAGCA	.	98	5	137	0	C|0.972;T|0.028	0	0	0	0	0	T	29599410	C	T	29599410	3	4	59	1	0	0	0	0	1	0	0	0	9994	652	23	1	607	1	MTUS2	13	29599410	Missense_Mutation	SNP	C	TCGA-P6-A5OH-01A-11D-A30A-10		29599410	85570468	162	11764										
DLEU7	220107	hgsc.bcm.edu	37	chr13	51417535	51417535	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0676691729323308	18	0.539713201460978	1.36467627545184	2.46691480562448	0.72067174096895	0.139785384641228	0.738095238095239	0	cctcctcctctggggagttcGcccgcgccgcggtccgccga	13	19	1	0	rs898861		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	.	NM_198989	exon1	c.C248T	p.A83V	GAGTTCGCCCGCG	.	7	6	0	0	G|0.789;A|0.211	0	0	0	0	0	A	51417535	G	A	51417535	3	1	59	1	0	0	0	0	1	0	0	0	4564	1087	38	1	242	1	DLEU7	13	51417535	Missense_Mutation	SNP	G	TCGA-P6-A5OH-01A-11D-A30A-10	21818125	51417535	63752343	163	11765										
SLITRK6	84189	hgsc.bcm.edu	37	chr13	86369481	86369481	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0676691729323308	18	0.539713201460978	1.36467627545184	2.46691480562448	0.72067174096895	0.139785384641228	0.738095238095239	0	ccaagtgaagcatttccaaaGtgaaatattccactagatca	6	9	1	3	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	SLITRK6-137	NM_032229	exon2	c.C1163A	p.T388N	TCCAAAGTGAAAT	.	68	4	126	0	.	0	0	0	0	0	T	86369481	G	T	86369481	3	4	59	1	0	0	0	0	1	0	0	0	14782	1029	36	3	1366	3	SLITRK6	13	86369481	Missense_Mutation	SNP	G	TCGA-P6-A5OH-01A-11D-A30A-10	34951946	86369481	28800397	164	11766										
COL4A2	1284	bcgsc.ca	37	chr13	111111173	111111173	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0676691729323308	18	0.539713201460978	1.36467627545184	2.46691480562448	0.72067174096895	0.139785384641228	0.738095238095239	0	gaagctatcaaaggtcttccGggactgccaggacccaaggg	13	11	2	0	rs7990214	byfrequency	TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	COL4A2-95	NM_001846	exon22	c.G1488A	p.P496P	TCTTCCGGGACTG	.	183	7	183	1	G|0.463;A|0.537	0	0	0	0	0	A	111111173	G	A	111111173	2	1	59	1	0	0	0	0	0	0	0	1	3696	1103	39	1		1	COL4A2	13	111111173	Silent	SNP	G	TCGA-P6-A5OH-01A-11D-A30A-10	24741692	111111173	4058705	165	11767										
COL4A2	1284	bcgsc.ca	37	chr13	111111235	111111235	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0676691729323308	18	0.539713201460978	1.36467627545184	2.46691480562448	0.72067174096895	0.139785384641228	0.738095238095239	0	gccggggaggaaaggggacaGaggagaccccggccaacacg	18	11	0	2	rs7990383	byfrequency	TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	COL4A2-95	NM_001846	exon22	c.G1550A	p.R517K	GGGACAGAGGAGA	.	163	7	168	1	G|0.479;A|0.521	0	0	0	0	0	A	111111235	G	A	111111235	3	1	59	1	0	0	0	0	1	0	0	0	3696	942	33	3	1632	3	COL4A2	13	111111235	Missense_Mutation	SNP	G	TCGA-P6-A5OH-01A-11D-A30A-10	62	111111235	4058643	166	11768										
MCF2L	23263	broad.mit.edu	37	chr13	113719264	113719264	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0676691729323308	18	0.539713201460978	1.36467627545184	2.46691480562448	0.72067174096895	0.139785384641228	0.738095238095239	0	cccaaggccatcgaaagtttCgccctcatggtgaagcagac	10	13	1	2	rs199810332		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	MCF2L-228	NM_001112732	exon7	c.C621T	p.F207F	AAGTTTCGCCCTC	.	187	4	144	2	C|0.999;T|0.001	0	0	0	0	0	T	113719264	C	T	113719264	2	4	59	1	0	0	0	0	0	0	0	1	9407	883	31	1		1	MCF2L	13	113719264	Silent	SNP	C	TCGA-P6-A5OH-01A-11D-A30A-10	2608029	113719264	1450614	167	11769										
TRIM9	114088	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr14	51561207	51561207	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0676691729323308	18	0.539713201460978	1.36467627545184	2.46691480562448	0.72067174096895	0.139785384641228	0.738095238095239	0	gcggtcaattaccccttccaGtacgcgattcttggggaagc	11	12	2	0	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	TRIM9-227	NM_015163	exon1	c.C451A	p.L151M	CTTCCAGTACGCG	.	136	9	71	0	.	0	0	0	0	0	T	51561207	G	T	51561207	3	4	59	1	0	0	0	0	1	0	0	0	16587	1020	36	3	1771	3	TRIM9	14	51561207	Missense_Mutation	SNP	G	TCGA-P6-A5OH-01A-11D-A30A-10		51561207	55788333	168	11770										
LGALS3	3958	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr14	55611906	55611906	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0676691729323308	18	0.539713201460978	1.36467627545184	2.46691480562448	0.72067174096895	0.139785384641228	0.738095238095239	0	acttgttgcagtacaatcatCgggttaaaaaactcaatgaa	7	7	2	1	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	LGALS3-514	NM_002306	exon6	c.C670T	p.R224W	AATCATCGGGTTA	.	141	39	113	0	.	0	0	0	0	0	T	55611906	C	T	55611906	3	4	59	1	0	0	0	0	1	0	0	0	8765	875	31	1	688	1	LGALS3	14	55611906	Missense_Mutation	SNP	C	TCGA-P6-A5OH-01A-11D-A30A-10	4050699	55611906	51737634	169	11771										
OTUB2	78990	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr14	94510351	94510353	+	In_Frame_Del	DEL	CTT	CTT	-													0.0676691729323308	18	0.539713201460978	1.36467627545184	2.46691480562448	0.72067174096895	0.139785384641228	0.738095238095239	0	tactgcagaccccaaatgacCttctggctgctggctttgag					novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	CTT	CTT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	OTUB2-500	NM_023112	exon4	c.253_255del	p.85_85del	AATGACCTTCTGG	.	251	57	220	0	.	0	0	0	0	0	-	94510353	CTT	-	94510351	7	5	59	1	0	1	0	1	0	0	0	0	11341	681	24	0	267	0	OTUB2	14	94510351	In_Frame_Del	DEL	CTT	TCGA-P6-A5OH-01A-11D-A30A-10	38898445	94510351	12839189	170	11772										
EML1	2009	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr14	100404174	100404174	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0676691729323308	18	0.539713201460978	1.36467627545184	2.46691480562448	0.72067174096895	0.139785384641228	0.738095238095239	0	gggttccctctgcctgtaagCaagtcgtaagtgtggaaact	12	9	1	0	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	EML1-138	NM_001008707	exon21	c.C2173T	p.Q725X	TGTAAGCAAGTCG	.	173	34	125	1	.	0	0	0	0	0	T	100404174	C	T	100404174	4	4	59	1	0	0	0	0	0	1	0	0	5109	711	25	3	2255	3	EML1	14	100404174	Nonsense_Mutation	SNP	C	TCGA-P6-A5OH-01A-11D-A30A-10	5893823	100404174	6945366	171	11773										
CKB	1152	hgsc.bcm.edu	37	chr14	103988180	103988180	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0676691729323308	18	0.539713201460978	1.36467627545184	2.46691480562448	0.72067174096895	0.139785384641228	0.738095238095239	0	accgcgagcttctcgatggcGcggcgctccccgcggctgca	14	17	1	0	rs1136165	byfrequency	TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	CKB-115	NM_001823	exon4	c.C456A	p.R152R	GATGGCGCGGCGC	.	10	10	0	0	G|0.327;T|0.673	0	0	0	0	0	T	103988180	G	T	103988180	2	4	59	1	0	0	0	0	0	0	0	1	3452	1074	38	2		2	CKB	14	103988180	Silent	SNP	G	TCGA-P6-A5OH-01A-11D-A30A-10	3584006	103988180	3361360	172	11774										
KIF26A	26153	hgsc.bcm.edu	37	chr14	104644984	104644984	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0676691729323308	18	0.539713201460978	1.36467627545184	2.46691480562448	0.72067174096895	0.139785384641228	0.738095238095239	0	cagtgggtggacctgcccccGcccctggctggctccctgaa	13	17	0	1	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	KIF26A-24	NM_015656	exon13	c.G5208T	p.P1736P	GCCCCCGCCCCTG	.	58	12	12	0	.	0	0	0	0	0	T	104644984	G	T	104644984	2	4	59	1	0	0	0	0	0	0	0	1	8315	1074	38	2		2	KIF26A	14	104644984	Silent	SNP	G	TCGA-P6-A5OH-01A-11D-A30A-10	656804	104644984	2704556	173	11775										
DUOX1	53905	hgsc.bcm.edu	37	chr15	45453135	45453135	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0676691729323308	18	0.539713201460978	1.36467627545184	2.46691480562448	0.72067174096895	0.139785384641228	0.738095238095239	0	gggcgacaagctggtgagccTgagccggaagaaggtggaga	19	7	0	4	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	DUOX1-142	NM_017434	exon30	c.T3803A	p.L1268Q	TGAGCCTGAGCCG	.	163	15	147	0	.	0	0	0	0	0	A	45453135	T	A	45453135	3	1	59	1	0	0	0	0	1	0	0	0	4811	1580	55	5	3913	5	DUOX1	15	45453135	Missense_Mutation	SNP	T	TCGA-P6-A5OH-01A-11D-A30A-10		45453135	57078257	174	11776										
UNC13C	440279	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr15	54542551	54542551	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0676691729323308	18	0.539713201460978	1.36467627545184	2.46691480562448	0.72067174096895	0.139785384641228	0.738095238095239	0	gagtgtgaagggctcctgtgGggcattgcaaggcaaggcat	17	7	0	1	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	UNC13C-51	NM_001080534	exon6	c.G3357T	p.W1119C	CCTGTGGGGCATT	.	190	47	261	0	.	0	0	0	0	0	T	54542551	G	T	54542551	3	4	59	1	0	0	0	0	1	0	0	0	17024	1241	43	3	3379	3	UNC13C	15	54542551	Missense_Mutation	SNP	G	TCGA-P6-A5OH-01A-11D-A30A-10	9089416	54542551	47988841	175	11777										
ISLR	3671	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr15	74467204	74467204	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0676691729323308	18	0.539713201460978	1.36467627545184	2.46691480562448	0.72067174096895	0.139785384641228	0.738095238095239	0	ctctgcaggaggcaccatgcAggagctgcatctgctctggt	13	12	3	0	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	ISLR-155	NM_201526	exon2	c.A5G	p.Q2R	CCATGCAGGAGCT	.	41	14	39	0	.	0	0	0	0	0	G	74467204	A	G	74467204	3	3	59	1	0	0	0	0	1	0	0	0	7879	188	7	4	7	4	ISLR	15	74467204	Missense_Mutation	SNP	A	TCGA-P6-A5OH-01A-11D-A30A-10	19924653	74467204	28064188	176	11778										
PTPN9	5780	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr15	75809664	75809665	+	Frame_Shift_Del	DEL	AT	AT	-													0.0676691729323308	18	0.539713201460978	1.36467627545184	2.46691480562448	0.72067174096895	0.139785384641228	0.738095238095239	0	tggcataattagaaccacacAtgtcatagataaacaccagt					novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	AT	AT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	PTPN9-226	NM_002833	exon5	c.463_464del	p.155_155del	CCACACATGTCAT	.	92	29	103	0	.	0	0	0	0	0	-	75809665	AT	-	75809664	7	5	59	1	0	1	0	1	0	0	0	0	12829	217	8	0	1353	0	PTPN9	15	75809664	Frame_Shift_Del	DEL	AT	TCGA-P6-A5OH-01A-11D-A30A-10	1342460	75809664	26721728	177	11779										
MESP2	145873	hgsc.bcm.edu	37	chr15	90319773	90319773	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0676691729323308	18	0.539713201460978	1.36467627545184	2.46691480562448	0.72067174096895	0.139785384641228	0.738095238095239	0	gcctccgagctgcagctcccGagccgcagaggcagccgcga	14	17	0	1	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	MESP2-68	NM_001039958	exon1	c.G185A	p.R62Q	GCTCCCGAGCCGC	.	9	5	0	0	.	0	0	0	0	0	A	90319773	G	A	90319773	3	1	59	1	0	0	0	0	1	0	0	0	9511	1058	37	1	187	1	MESP2	15	90319773	Missense_Mutation	SNP	G	TCGA-P6-A5OH-01A-11D-A30A-10	14510109	90319773	12211619	178	11780										
UNKL	64718	broad.mit.edu	37	chr16	1417283	1417283	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0676691729323308	18	0.539713201460978	1.36467627545184	2.46691480562448	0.72067174096895	0.139785384641228	0.738095238095239	0	tcttctgcagcgccagctgcCggtcgctatcggccacacgg	12	16	2	0	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	UNKL-90	NM_001193388	exon14	c.G1856A	p.R619Q	AGCTGCCGGTCGC	.	118	10	15	0	.	0	0	0	0	0	T	1417283	C	T	1417283	3	4	59	1	0	0	0	0	1	0	0	0	17039	652	23	1	353	1	UNKL	16	1417283	Missense_Mutation	SNP	C	TCGA-P6-A5OH-01A-11D-A30A-10		1417283	88937470	179	11781										
CLCN7	1186	bcgsc.ca	37	chr16	1503879	1503879	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0676691729323308	18	0.539713201460978	1.36467627545184	2.46691480562448	0.72067174096895	0.139785384641228	0.738095238095239	0	tagttcaaggcattgaacacTgctccaagcacaccgcctgc	8	14	1	1	rs2235579	byfrequency	TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	CLCN7-92	NM_001287	exon14	c.A1170T	p.A390A	GAACACTGCTCCA	.	216	9	124	1	T|0.472;A|0.528	0	0	0	0	0	A	1503879	T	A	1503879	2	1	59	1	0	0	0	0	0	0	0	1	3474	1567	55	5		5	CLCN7	16	1503879	Silent	SNP	T	TCGA-P6-A5OH-01A-11D-A30A-10	86596	1503879	88850874	180	11782										
SYNGR3	9143	hgsc.bcm.edu	37	chr16	2042139	2042139	+	Silent	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0676691729323308	18	0.539713201460978	1.36467627545184	2.46691480562448	0.72067174096895	0.139785384641228	0.738095238095239	0	tgcgccgccttcctgctgctCgatgtgcgcttccagcaaat	10	15	0	0	rs12922682	byfrequency	TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	SYNGR3-90	NM_004209	exon2	c.C264A	p.L88L	GCTGCTCGATGTG	.	50	33	0	0	C|0.996;A|0.004	0	0	0	0	0	A	2042139	C	A	2042139	2	1	59	1	0	0	0	0	0	0	0	1	15487	871	31	2		2	SYNGR3	16	2042139	Silent	SNP	C	TCGA-P6-A5OH-01A-11D-A30A-10	538260	2042139	88312614	181	11783										
ZNF598	90850	hgsc.bcm.edu	37	chr16	2059674	2059674	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0676691729323308	18	0.539713201460978	1.36467627545184	2.46691480562448	0.72067174096895	0.139785384641228	0.738095238095239	0	acagcacgcagctcccgcctTcccgctcaggagctgccgcc	10	20	1	0	rs71384660		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	ZNF598-432	NM_178167	exon2	c.A74G	p.E25G	CCGCCTTCCCGCT	.	8	8	0	0	T|0.007;C|0.993	0	0	0	0	0	C	2059674	T	C	2059674	3	2	59	1	0	0	0	0	1	0	0	0	18065	1770	62	4	2689	4	ZNF598	16	2059674	Missense_Mutation	SNP	T	TCGA-P6-A5OH-01A-11D-A30A-10	17535	2059674	88295079	182	11784										
MEFV	4210	hgsc.bcm.edu	37	chr16	3304463	3304463	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0676691729323308	18	0.539713201460978	1.36467627545184	2.46691480562448	0.72067174096895	0.139785384641228	0.738095238095239	0	agctggcgtttctgcgcagcCggacctcggcctggcccccc	13	18	1	0	rs224222	byfrequency	TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	MEFV-228	NM_000243	exon2	c.G605A	p.R202Q	CGCAGCCGGACCT	.	16	9	0	0	C|0.816;T|0.184	0	0	0	0	0	T	3304463	C	T	3304463	3	4	59	1	0	0	0	0	1	0	0	0	9487	652	23	1	1776	1	MEFV	16	3304463	Missense_Mutation	SNP	C	TCGA-P6-A5OH-01A-11D-A30A-10	1244789	3304463	87050290	183	11785										
DNASE1	1773	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr16	3705910	3705910	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0676691729323308	18	0.539713201460978	1.36467627545184	2.46691480562448	0.72067174096895	0.139785384641228	0.738095238095239	0	gagacagccacctgactgccGtggggaagctgctggacaac	14	12	0	2	rs143363152	alternate_allele	TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	DNASE1-90	NM_005223	exon3	c.G208C	p.V70L	ACTGCCGTGGGGA	.	204	50	126	0	G|1.000;T|0.000	0	0	0	0	0	C	3705910	G	C	3705910	3	2	59	1	0	0	0	0	1	0	0	0	4671	1145	40	2	214	2	DNASE1	16	3705910	Missense_Mutation	SNP	G	TCGA-P6-A5OH-01A-11D-A30A-10	401447	3705910	86648843	184	11786										
ADCY7	113	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr16	50326734	50326734	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0676691729323308	18	0.539713201460978	1.36467627545184	2.46691480562448	0.72067174096895	0.139785384641228	0.738095238095239	0	tgcgcatcgagaagcgccagCaggtgggacccggcccccac	14	16	0	1	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	ADCY7-91	NM_001114	exon4	c.C685T	p.Q229X	CGCCAGCAGGTGG	.	47	14	33	0	.	0	0	0	0	0	T	50326734	C	T	50326734	4	4	59	1	0	0	0	0	0	1	0	0	299	711	25	3	699	3	ADCY7	16	50326734	Nonsense_Mutation	SNP	C	TCGA-P6-A5OH-01A-11D-A30A-10	46620824	50326734	40028019	185	11787										
CDH1	999	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr16	68867311	68867314	+	Frame_Shift_Del	DEL	CAGA	CAGA	-													0.0676691729323308	18	0.539713201460978	1.36467627545184	2.46691480562448	0.72067174096895	0.139785384641228	0.738095238095239	0	ctccctgaactcctcagagtCagacaaagaccaggactatg					novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	CAGA	CAGA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	CDH1-3377	NM_004360	exon16	c.2558_2561del	p.853_854del	CAGAGTCAGACAA	.	146	24	85	0	.	0	0	0	0	0	-	68867314	CAGA	-	68867311	7	5	59	1	0	1	0	1	0	0	0	0	3101	838	29	0	2620	0	CDH1	16	68867311	Frame_Shift_Del	DEL	CAGA	TCGA-P6-A5OH-01A-11D-A30A-10	18540577	68867311	21487442	186	11788										
ZFPM1	161882	hgsc.bcm.edu	37	chr16	88599696	88599697	+	Frame_Shift_Del	DEL	GA	GA	-													0.0676691729323308	18	0.539713201460978	1.36467627545184	2.46691480562448	0.72067174096895	0.139785384641228	0.738095238095239	0	ccaacggagaggccagagcgGagcctctggcccagaatgga					rs67549438	alternate_allele	TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	GA	GA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	ZFPM1-90	NM_153813	exon10	c.1330_1331del	p.444_444del	AGAGCGGAGCCTC	.	17	10	0	0	.	0	0	0	0	0	-	88599697	GA	-	88599696	7	5	59	1	0	1	0	1	0	0	0	0	17694	1175	41	0	1368	0	ZFPM1	16	88599696	Frame_Shift_Del	DEL	GA	TCGA-P6-A5OH-01A-11D-A30A-10	19732385	88599696	1755057	187	11789	133	3								
ZFPM1	161882	hgsc.bcm.edu	37	chr16	88599701	88599701	+	Frame_Shift_Del	DEL	T	T	-													0.0676691729323308	18	0.539713201460978	1.36467627545184	2.46691480562448	0.72067174096895	0.139785384641228	0.738095238095239	0	ggagaggccagagcggagccTctggcccagaatggaggcag					novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	ZFPM1-90	NM_153813	exon10	c.1335delT	p.P445fs	GGAGCCTCTGGCC	.	12	10	0	0	.	0	0	0	0	0	-	88599701	T	-	88599701	7	5	59	1	0	1	0	1	0	0	0	0	17694	1538	54	0	1373	0	ZFPM1	16	88599701	Frame_Shift_Del	DEL	T	TCGA-P6-A5OH-01A-11D-A30A-10	5	88599701	1755052	188	11790	133	3								
ZFPM1	161882	hgsc.bcm.edu	37	chr16	88599703	88599705	+	In_Frame_Del	DEL	TGG	TGG	-													0.0676691729323308	18	0.539713201460978	1.36467627545184	2.46691480562448	0.72067174096895	0.139785384641228	0.738095238095239	0	agaggccagagcggagcctcTggcccagaatggaggcagca					novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	TGG	TGG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	ZFPM1-90	NM_153813	exon10	c.1337_1339del	p.446_447del	AGCCTCTGGCCCA	.	12	10	0	0	.	0	0	0	0	0	-	88599705	TGG	-	88599703	7	5	59	1	0	1	0	1	0	0	0	0	17694	1580	55	0	1375	0	ZFPM1	16	88599703	In_Frame_Del	DEL	TGG	TCGA-P6-A5OH-01A-11D-A30A-10	2	88599703	1755050	189	11791	133	3								
CYBA	1535	hgsc.bcm.edu	37	chr16	88709869	88709869	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0676691729323308	18	0.539713201460978	1.36467627545184	2.46691480562448	0.72067174096895	0.139785384641228	0.738095238095239	0	ggcttcttgcgggcctcggcCgggggccgcggcggggggtt	22	12	1	0	rs72547284	byfrequency;by1000genomes	TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	CYBA-90	NM_000101	exon6	c.G480A	p.P160P	CTCGGCCGGGGGC	.	5	4	0	0	C|0.985;T|0.015	0	0	0	0	0	T	88709869	C	T	88709869	2	4	59	1	0	0	0	0	0	0	0	1	4137	639	23	1		1	CYBA	16	88709869	Silent	SNP	C	TCGA-P6-A5OH-01A-11D-A30A-10	110166	88709869	1644884	190	11792										
GLTPD2	388323	hgsc.bcm.edu	37	chr17	4693384	4693384	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0676691729323308	18	0.539713201460978	1.36467627545184	2.46691480562448	0.72067174096895	0.139785384641228	0.738095238095239	0	gcctaccgtgcggccctgggTccgcatcacccctggctggt	13	17	1	0	rs150754782		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	GLTPD2-68	NM_001014985	exon4	c.T669C	p.G223G	CCTGGGTCCGCAT	.	16	9	1	0	T|0.978;C|0.022	0	0	0	0	0	C	4693384	T	C	4693384	2	2	59	1	0	0	0	0	0	0	0	1	6493	1654	58	4		4	GLTPD2	17	4693384	Silent	SNP	T	TCGA-P6-A5OH-01A-11D-A30A-10		4693384	76501826	191	11793										
PLSCR3	57048	hgsc.bcm.edu	37	chr17	7297121	7297121	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0676691729323308	18	0.539713201460978	1.36467627545184	2.46691480562448	0.72067174096895	0.139785384641228	0.738095238095239	0	gtgacagggtagggaggtggGggcgaaggggcgtagccttt	22	5	0	1	rs2277641	byfrequency	TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	PLSCR3-22	NM_020360	exon3	c.C42T	p.P14P	AGGTGGGGGCGAA	.	7	5	1	0	G|0.929;A|0.071	0	0	0	0	0	A	7297121	G	A	7297121	2	1	59	1	0	0	0	0	0	0	0	1	12140	1219	43	3		3	PLSCR3	17	7297121	Silent	SNP	G	TCGA-P6-A5OH-01A-11D-A30A-10	2603737	7297121	73898089	192	11794										
LSMD1	84316	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	7760499	7760499	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0676691729323308	18	0.539713201460978	1.36467627545184	2.46691480562448	0.72067174096895	0.139785384641228	0.738095238095239	0	cgctcagccgccgagtcctcGcgctctccgtccgaatcctg	10	19	2	0	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	LSMD1-91	NM_032356	exon1	c.C243T	p.R81R	GTCCTCGCGCTCT	.	95	19	62	1	.	0	0	0	0	0	A	7760499	G	A	7760499	2	1	59	1	0	0	0	0	0	0	0	1	9089	1074	38	1		1	LSMD1	17	7760499	Silent	SNP	G	TCGA-P6-A5OH-01A-11D-A30A-10	463378	7760499	73434711	193	11795										
MYH2	4620	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	10428659	10428659	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0676691729323308	18	0.539713201460978	1.36467627545184	2.46691480562448	0.72067174096895	0.139785384641228	0.738095238095239	0	tctgttccgtgaggtcagaaAtctcctctgttgtttgagta	10	8	4	3	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	MYH2-194	NM_017534	exon33	c.T4544A	p.I1515N	TCAGAAATCTCCT	.	60	20	78	0	.	0	0	0	0	0	T	10428659	A	T	10428659	3	4	59	1	0	0	0	0	1	0	0	0	10063	101	4	5	1313	5	MYH2	17	10428659	Missense_Mutation	SNP	A	TCGA-P6-A5OH-01A-11D-A30A-10	2668160	10428659	70766551	194	11796										
HS3ST3A1	9955	broad.mit.edu	37	chr17	13400090	13400090	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0676691729323308	18	0.539713201460978	1.36467627545184	2.46691480562448	0.72067174096895	0.139785384641228	0.738095238095239	0	gtgacgaagtaactgggcgtCttctccatggtgatctgccc	12	11	3	2	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	HS3ST3A1-515	NM_006042	exon2	c.G645C	p.K215N	GGGCGTCTTCTCC	.	419	13	272	1	.	0	0	0	0	0	G	13400090	C	G	13400090	3	3	59	1	0	0	0	0	1	0	0	0	7386	912	32	3	579	3	HS3ST3A1	17	13400090	Missense_Mutation	SNP	C	TCGA-P6-A5OH-01A-11D-A30A-10	2971431	13400090	67795120	195	11797										
UBB	7314	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr17	16285604	16285604	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0676691729323308	18	0.539713201460978	1.36467627545184	2.46691480562448	0.72067174096895	0.139785384641228	0.738095238095239	0	tgcaggcaagcagctggaagAtggccgcactctttctgact	12	11	2	2	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	UBB-47	NM_018955	exon2	c.A383G	p.D128G	TGGAAGATGGCCG	.	437	83	214	0	.	0	0	0	0	0	G	16285604	A	G	16285604	3	3	59	1	0	0	0	0	1	0	0	0	16879	333	12	4	385	4	UBB	17	16285604	Missense_Mutation	SNP	A	TCGA-P6-A5OH-01A-11D-A30A-10	2885514	16285604	64909606	196	11798										
SMCR8	140775	broad.mit.edu	37	chr17	18221001	18221001	+	Frame_Shift_Del	DEL	A	A	-													0.0676691729323308	18	0.539713201460978	1.36467627545184	2.46691480562448	0.72067174096895	0.139785384641228	0.738095238095239	0	ccgtgtagacttttcagtggAaaatgccaacccttcttccc					novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	SMCR8-91	NM_144775	exon1	c.1898delA	p.E633fs	CAGTGGAAAATGC	.	187	7	133	0	.	0	0	0	0	0	-	18221001	A	-	18221001	7	5	59	1	0	1	0	1	0	0	0	0	14827	246	9	0	1900	0	SMCR8	17	18221001	Frame_Shift_Del	DEL	A	TCGA-P6-A5OH-01A-11D-A30A-10	1935397	18221001	62974209	197	11799										
NEK8	284086	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	27064883	27064883	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0676691729323308	18	0.539713201460978	1.36467627545184	2.46691480562448	0.72067174096895	0.139785384641228	0.738095238095239	0	gccatcccaccaccactgtcGtcagtgtatgcctggggtgg	12	14	1	0	rs146798411		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	NEK8-335	NM_178170	exon7	c.G936A	p.S312S	ACTGTCGTCAGTG	.	237	35	70	0	G|1.000;A|0.000	0	0	0	0	0	A	27064883	G	A	27064883	2	1	59	1	0	0	0	0	0	0	0	1	10359	1132	40	1		1	NEK8	17	27064883	Silent	SNP	G	TCGA-P6-A5OH-01A-11D-A30A-10	8843882	27064883	54130327	198	11800										
KRTAP3-2	83897	bcgsc.ca	37	chr17	39156027	39156027	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0676691729323308	18	0.539713201460978	1.36467627545184	2.46691480562448	0.72067174096895	0.139785384641228	0.738095238095239	0	gggcaggcagactccacagcGgcaggatttgtcggaggagc	17	10	0	1	rs3829598	byfrequency	TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	.	NM_031959	exon1	c.C79T	p.R27C	CACAGCGGCAGGA	.	195	8	315	3	G|0.865;A|0.135	0	0	0	0	0	A	39156027	G	A	39156027	3	1	59	1	0	0	0	0	1	0	0	0	8568	1116	39	1	221	1	KRTAP3-2	17	39156027	Missense_Mutation	SNP	G	TCGA-P6-A5OH-01A-11D-A30A-10	12091144	39156027	42039183	199	11801										
FKBP10	60681	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	39974745	39974745	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.0676691729323308	18	0.539713201460978	1.36467627545184	2.46691480562448	0.72067174096895	0.139785384641228	0.738095238095239	0	gagagaaggaagattatcatCcctccattcctggcctatgg	10	10	1	2	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	FKBP10-227	NM_021939	exon4	c.C693G	p.I231M	TATCATCCCTCCA	.	142	45	149	0	.	0	0	0	0	0	G	39974745	C	G	39974745	3	3	59	1	0	0	0	0	1	0	0	0	5921	845	30	3	707	3	FKBP10	17	39974745	Missense_Mutation	SNP	C	TCGA-P6-A5OH-01A-11D-A30A-10	818718	39974745	41220465	200	11802										
BECN1	8678	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	40963676	40963676	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0676691729323308	18	0.539713201460978	1.36467627545184	2.46691480562448	0.72067174096895	0.139785384641228	0.738095238095239	0	cattgcgctatactgacctgTagggaagacaaaaacgtgtc	10	9	0	2	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	BECN1-228	NM_003766	exon11	c.A1181G	p.Y394C	GACCTGTAGGGAA	.	97	27	85	0	.	0	0	0	0	0	C	40963676	T	C	40963676	3	2	59	1	0	0	0	0	1	0	0	0	1397	1638	57	4	179	4	BECN1	17	40963676	Missense_Mutation	SNP	T	TCGA-P6-A5OH-01A-11D-A30A-10	988931	40963676	40231534	201	11803										
GRN	2896	broad.mit.edu	37	chr17	42427607	42427607	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0676691729323308	18	0.539713201460978	1.36467627545184	2.46691480562448	0.72067174096895	0.139785384641228	0.738095238095239	0	tgtccacaggtaacaactccGtgggtgccatccagtgccct	10	14	0	0	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	GRN-517	NM_002087	exon5	c.G361A	p.V121M	AACTCCGTGGGTG	.	155	5	99	0	.	0	0	0	0	0	A	42427607	G	A	42427607	3	1	59	1	0	0	0	0	1	0	0	0	6825	1145	40	1	375	1	GRN	17	42427607	Missense_Mutation	SNP	G	TCGA-P6-A5OH-01A-11D-A30A-10	1463931	42427607	38767603	202	11804										
MARCH10	162333	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	60779069	60779069	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0676691729323308	18	0.539713201460978	1.36467627545184	2.46691480562448	0.72067174096895	0.139785384641228	0.738095238095239	0	cagttggcttccttgctagaCgacctggctttgagaaatgc	11	10	0	2	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	MARCH10-90	NM_001100875	exon11	c.G2422A	p.V808I	GCTAGACGACCTG	.	109	16	59	0	.	0	0	0	0	0	T	60779069	C	T	60779069	3	4	59	1	0	0	0	0	1	0	0	0	9327	536	19	1	8	1	MARCH10	17	60779069	Missense_Mutation	SNP	C	TCGA-P6-A5OH-01A-11D-A30A-10	18351462	60779069	20416141	203	11805										
RAB37	326624	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr17	72740494	72740494	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0676691729323308	18	0.539713201460978	1.36467627545184	2.46691480562448	0.72067174096895	0.139785384641228	0.738095238095239	0	gcccagagggacgtggtgatCatgctgctaggcaacaaggt	15	9	1	2	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	RAB37-230	NM_001163989	exon6	c.C429T	p.I143I	GGTGATCATGCTG	.	124	10	62	0	.	0	0	0	0	0	T	72740494	C	T	72740494	2	4	59	1	0	0	0	0	0	0	0	1	12962	816	29	3		3	RAB37	17	72740494	Silent	SNP	C	TCGA-P6-A5OH-01A-11D-A30A-10	11961425	72740494	8454716	204	11806										
FDXR	2232	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	72862635	72862635	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0676691729323308	18	0.539713201460978	1.36467627545184	2.46691480562448	0.72067174096895	0.139785384641228	0.738095238095239	0	ccctgcccacctccacgttgCcccagaaggcacagcggcca	9	20	0	1	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	FDXR-226	NM_001258012	exon4	c.G455C	p.G152A	ACGTTGCCCCAGA	.	401	102	184	1	.	0	0	0	0	0	G	72862635	C	G	72862635	3	3	59	1	0	0	0	0	1	0	0	0	5826	739	26	3	1203	3	FDXR	17	72862635	Missense_Mutation	SNP	C	TCGA-P6-A5OH-01A-11D-A30A-10	122141	72862635	8332575	205	11807										
DNAH17	8632	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr17	76424635	76424635	+	Frame_Shift_Del	DEL	C	C	-													0.0676691729323308	18	0.539713201460978	1.36467627545184	2.46691480562448	0.72067174096895	0.139785384641228	0.738095238095239	0	gcgggacactcccgtgcctgCccccgagtccgtctcttttg					novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	DNAH17-142	NM_173628	exon77	c.12559delG	p.A4187fs	TGCCTGCCCCCGA	.	154	43	88	0	.	0	0	0	0	0	-	76424635	C	-	76424635	7	5	59	1	0	1	0	1	0	0	0	0	4612	739	26	0	849	0	DNAH17	17	76424635	Frame_Shift_Del	DEL	C	TCGA-P6-A5OH-01A-11D-A30A-10	3562000	76424635	4770575	206	11808										
TIMP2	7077	hgsc.bcm.edu	37	chr17	76921135	76921135	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0676691729323308	18	0.539713201460978	1.36467627545184	2.46691480562448	0.72067174096895	0.139785384641228	0.738095238095239	0	gtcgccagcagcaggaggccGagcgccagccgcagggtgcg	18	14	0	0	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	TIMP2-650	NM_003255	exon1	c.C36T	p.L12L	GAGGCCGAGCGCC	.	17	8	0	0	.	0	0	0	0	0	A	76921135	G	A	76921135	2	1	59	1	0	0	0	0	0	0	0	1	15955	1045	37	1		1	TIMP2	17	76921135	Silent	SNP	G	TCGA-P6-A5OH-01A-11D-A30A-10	496500	76921135	4274075	207	11809										
BAHCC1	57597	broad.mit.edu	37	chr17	79410879	79410881	+	In_Frame_Del	DEL	GAG	GAG	-													0.0676691729323308	18	0.539713201460978	1.36467627545184	2.46691480562448	0.72067174096895	0.139785384641228	0.738095238095239	0	acgcgctggacctggaggctGaggaggagaggacgaggcta					novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	BAHCC1-23	.	.	.	.	GAGGCTGAGGAGG	.	108	11	30	0	.	0	0	0	0	0	-	79410881	GAG	-	79410879	7	5	59	1	0	1	0	1	0	0	0	0	1297	1291	45	0	2113	0	BAHCC1	17	79410879	In_Frame_Del	DEL	GAG	TCGA-P6-A5OH-01A-11D-A30A-10	2489744	79410879	1784331	208	11810										
FASN	2194	hgsc.bcm.edu	37	chr17	80043739	80043739	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0676691729323308	18	0.539713201460978	1.36467627545184	2.46691480562448	0.72067174096895	0.139785384641228	0.738095238095239	0	gaatacaggtgaccgtggccAgccagcacctgtagggggtg	16	10	0	1	rs2229422	byfrequency	TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	FASN-90	NM_004104	exon23	c.T3741C	p.A1247A	GTGGCCAGCCAGC	.	10	4	1	0	T|0.697;G|0.014;C|0.242;A|0.047	0	0	0	0	0	G	80043739	A	G	80043739	2	3	59	1	0	0	0	0	0	0	0	1	5702	175	7	4		4	FASN	17	80043739	Silent	SNP	A	TCGA-P6-A5OH-01A-11D-A30A-10	632860	80043739	1151471	209	11811										
CSNK1D	1453	broad.mit.edu;ucsc.edu	37	chr17	80206823	80206823	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0676691729323308	18	0.539713201460978	1.36467627545184	2.46691480562448	0.72067174096895	0.139785384641228	0.738095238095239	0	gagatgttgacgggggccccGcggtgcagccgcatactcac	15	13	1	2	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	CSNK1D-909	NM_001893	exon8	c.C1125A	p.R375R	GGCCCCGCGGTGC	.	98	13	69	1	.	0	0	0	0	0	T	80206823	G	T	80206823	2	4	59	1	0	0	0	0	0	0	0	1	3958	1074	38	2		2	CSNK1D	17	80206823	Silent	SNP	G	TCGA-P6-A5OH-01A-11D-A30A-10	163084	80206823	988387	210	11812										
ANKRD30B	374860	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr18	14763720	14763720	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0676691729323308	18	0.539713201460978	1.36467627545184	2.46691480562448	0.72067174096895	0.139785384641228	0.738095238095239	0	gaacacctgatgaggctgcaCccttggcggaaagaacacct	11	12	0	3	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	ANKRD30B-24	NM_001145029	exon7	c.C856A	p.P286T	GCTGCACCCTTGG	.	55	11	46	0	.	0	0	0	0	0	A	14763720	C	A	14763720	3	1	59	1	0	0	0	0	1	0	0	0	659	507	18	3	882	3	ANKRD30B	18	14763720	Missense_Mutation	SNP	C	TCGA-P6-A5OH-01A-11D-A30A-10		14763720	63313528	211	11813										
ASXL3	80816	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr18	31323513	31323513	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0676691729323308	18	0.539713201460978	1.36467627545184	2.46691480562448	0.72067174096895	0.139785384641228	0.738095238095239	0	gcccatgctttttaataaaaAttctgtccctgtatctgttt	5	9	2	0	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	ASXL3-49	NM_030632	exon12	c.A3701T	p.N1234I	ATAAAAATTCTGT	.	37	15	51	0	.	0	0	0	0	0	T	31323513	A	T	31323513	3	4	59	1	0	0	0	0	1	0	0	0	1069	101	4	5	3747	5	ASXL3	18	31323513	Missense_Mutation	SNP	A	TCGA-P6-A5OH-01A-11D-A30A-10	16559793	31323513	46753735	212	11814										
SETBP1	26040	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr18	42531586	42531586	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0676691729323308	18	0.539713201460978	1.36467627545184	2.46691480562448	0.72067174096895	0.139785384641228	0.738095238095239	0	gccagccggatgttccagccGtgccttccaactttcagtca	9	15	2	0	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	SETBP1-155	NM_015559	exon4	c.G2281A	p.V761M	CCAGCCGTGCCTT	.	152	27	158	0	.	0	0	0	0	0	A	42531586	G	A	42531586	3	1	59	1	0	0	0	0	1	0	0	0	14164	1145	40	1	2484	1	SETBP1	18	42531586	Missense_Mutation	SNP	G	TCGA-P6-A5OH-01A-11D-A30A-10	11208073	42531586	35545662	213	11815										
SERPINB10	5273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr18	61587036	61587036	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0676691729323308	18	0.539713201460978	1.36467627545184	2.46691480562448	0.72067174096895	0.139785384641228	0.738095238095239	0	tttcagaaatatttagaagaCatgaaaacatattttggtgc	7	4	1	4	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	SERPINB10-227	NM_005024	exon4	c.C387T	p.D129D	AGAAGACATGAAA	.	48	7	87	0	.	0	0	0	0	0	T	61587036	C	T	61587036	2	4	59	1	0	0	0	0	0	0	0	1	14132	477	17	3		3	SERPINB10	18	61587036	Silent	SNP	C	TCGA-P6-A5OH-01A-11D-A30A-10	19055450	61587036	16490212	214	11816										
CDH7	1005	broad.mit.edu	37	chr18	63547655	63547655	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0676691729323308	18	0.539713201460978	1.36467627545184	2.46691480562448	0.72067174096895	0.139785384641228	0.738095238095239	0	agtgttgatcctccttatcgTcactatgagaagacggaaaa	9	8	1	3	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	CDH7-94	NM_004361	exon12	c.T1883C	p.V628A	TTATCGTCACTAT	.	55	3	50	0	.	0	0	0	0	0	C	63547655	T	C	63547655	3	2	59	1	0	0	0	0	1	0	0	0	3121	1667	58	4	1925	4	CDH7	18	63547655	Missense_Mutation	SNP	T	TCGA-P6-A5OH-01A-11D-A30A-10	1960619	63547655	14529593	215	11817										
CBLN2	147381	hgsc.bcm.edu	37	chr18	70209321	70209321	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0676691729323308	18	0.539713201460978	1.36467627545184	2.46691480562448	0.72067174096895	0.139785384641228	0.738095238095239	0	aggcaggatccgcagccgccCggctcgcgcagcgccccccg	14	20	0	0	rs7237888		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	CBLN2-90	NM_182511	exon3	c.G75T	p.P25P	GCCGCCCGGCTCG	.	8	8	0	0	C|0.390;A|0.610	0	0	0	0	0	A	70209321	C	A	70209321	2	1	59	1	0	0	0	0	0	0	0	1	2711	639	23	2		2	CBLN2	18	70209321	Silent	SNP	C	TCGA-P6-A5OH-01A-11D-A30A-10	6661666	70209321	7867927	216	11818										
C19orf21	126353	bcgsc.ca	37	chr19	756985	756985	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0676691729323308	18	0.539713201460978	1.36467627545184	2.46691480562448	0.72067174096895	0.139785384641228	0.738095238095239	0	taccccatcctgggcatcccTcaggcacaccgtggcaccgg	10	18	1	0	rs8110536	byfrequency	TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	C19orf21-91	NM_173481	exon2	c.T39G	p.P13P	CATCCCTCAGGCA	.	337	10	128	0	T|0.840;G|0.160	0	0	0	0	0	G	756985	T	G	756985	2	3	59	1	0	0	0	0	0	0	0	1	1919	1538	54	5		5	C19orf21	19	756985	Silent	SNP	T	TCGA-P6-A5OH-01A-11D-A30A-10		756985	58371998	217	11819										
ARID3A	1820	hgsc.bcm.edu	37	chr19	929678	929678	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0676691729323308	18	0.539713201460978	1.36467627545184	2.46691480562448	0.72067174096895	0.139785384641228	0.738095238095239	0	gacgaggacagagagcccgaGagtgcccggatgcagcgggc	18	11	0	2	rs3826948		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	ARID3A-90	NM_005224	exon2	c.G150A	p.E50E	GCCCGAGAGTGCC	.	8	6	0	0	T|0.495;C|0.504	0	0	0	0	0	A	929678	G	A	929678	2	1	59	1	0	0	0	0	0	0	0	1	916	933	33	3		3	ARID3A	19	929678	Silent	SNP	G	TCGA-P6-A5OH-01A-11D-A30A-10	172693	929678	58199305	218	11820										
ABCA7	10347	hgsc.bcm.edu	37	chr19	1065044	1065044	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0676691729323308	18	0.539713201460978	1.36467627545184	2.46691480562448	0.72067174096895	0.139785384641228	0.738095238095239	0	ctgcgcgaggcacatggaggCcgcctgcgcttccagctgcc	14	16	0	0	rs4147935	byfrequency	TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	ABCA7-98	NM_019112	exon46	c.C6159T	p.G2053G	TGGAGGCCGCCTG	.	27	19	1	0	C|0.766;T|0.234	0	0	0	0	0	T	1065044	C	T	1065044	2	4	59	1	0	0	0	0	0	0	0	1	37	726	26	3		3	ABCA7	19	1065044	Silent	SNP	C	TCGA-P6-A5OH-01A-11D-A30A-10	135366	1065044	58063939	219	11821										
CREB3L3	84699	broad.mit.edu	37	chr19	4168347	4168347	+	Splice_Site	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0676691729323308	18	0.539713201460978	1.36467627545184	2.46691480562448	0.72067174096895	0.139785384641228	0.738095238095239	0	cctccccatttcacttggcaGtacgaggagcgagtgctgaa	11	12	1	1	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	CREB3L3-92	NM_001271995	exon6	c.712-1G>A	.	TTGGCAGTACGAG	.	66	25	46	2	.	0	0	0	0	0	A	4168347	G	A	4168347	5	1	59	1	0	0	0	0	0	0	1	0	3864	1043	36	3	736	3	CREB3L3	19	4168347	Splice_Site	SNP	G	TCGA-P6-A5OH-01A-11D-A30A-10	3103303	4168347	54960636	220	11822										
KDM4B	23030	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr19	5041154	5041154	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0676691729323308	18	0.539713201460978	1.36467627545184	2.46691480562448	0.72067174096895	0.139785384641228	0.738095238095239	0	tgtttgttcaccaggtactgTaccccgcggcaccaggactt	10	13	1	0	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	KDM4B-226	NM_015015	exon5	c.T324C	p.C108C	GTACTGTACCCCG	.	140	12	104	0	.	0	0	0	0	0	C	5041154	T	C	5041154	2	2	59	1	0	0	0	0	0	0	0	1	8150	1644	57	4		4	KDM4B	19	5041154	Silent	SNP	T	TCGA-P6-A5OH-01A-11D-A30A-10	872807	5041154	54087829	221	11823										
C3	718	broad.mit.edu;bcgsc.ca	37	chr19	6684638	6684638	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0676691729323308	18	0.539713201460978	1.36467627545184	2.46691480562448	0.72067174096895	0.139785384641228	0.738095238095239	0	caggtgagttgatctttggcCttagcatggtacattgtcac	11	8	2	2	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	C3-95	NM_000064	exon32	c.G4053A	p.K1351K	TTTGGCCTTAGCA	.	180	11	140	1	.	0	0	0	0	0	T	6684638	C	T	6684638	2	4	59	1	0	0	0	0	0	0	0	1	2210	680	24	3		3	C3	19	6684638	Silent	SNP	C	TCGA-P6-A5OH-01A-11D-A30A-10	1643484	6684638	52444345	222	11824										
KEAP1	9817	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	10600462	10600462	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0676691729323308	18	0.539713201460978	1.36467627545184	2.46691480562448	0.72067174096895	0.139785384641228	0.738095238095239	0	gagacgattgaggacagccaCgcccaccccgatccttcgtg	11	15	0	2	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	KEAP1-637	NM_012289	exon4	c.G1393A	p.V465M	CAGCCACGCCCAC	.	264	27	60	0	.	0	0	0	0	0	T	10600462	C	T	10600462	3	4	59	1	0	0	0	0	1	0	0	0	8162	536	19	1	493	1	KEAP1	19	10600462	Missense_Mutation	SNP	C	TCGA-P6-A5OH-01A-11D-A30A-10	3915824	10600462	48528521	223	11825										
SMARCA4	6597	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	11097013	11097013	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0676691729323308	18	0.539713201460978	1.36467627545184	2.46691480562448	0.72067174096895	0.139785384641228	0.738095238095239	0	ttggggcagcagaaccggggCccaaccccatttaaccagaa	11	13	0	2	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	SMARCA4-1523	NM_003072	exon4	c.C504T	p.G168G	CCGGGGCCCAACC	.	136	17	50	0	.	0	0	0	0	0	T	11097013	C	T	11097013	2	4	59	1	0	0	0	0	0	0	0	1	14805	726	26	3		3	SMARCA4	19	11097013	Silent	SNP	C	TCGA-P6-A5OH-01A-11D-A30A-10	496551	11097013	48031970	224	11826										
NOTCH3	4854	ucsc.edu	37	chr19	15284881	15284881	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0676691729323308	18	0.539713201460978	1.36467627545184	2.46691480562448	0.72067174096895	0.139785384641228	0.738095238095239	0	ccaggtggggtcactcacccGatcacctcgggggccagctc	13	16	3	0	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	NOTCH3-855	NM_000435	exon25	c.C4734T	p.I1578I	TCACCCGATCACC	.	111	19	21	1	.	0	0	0	0	0	A	15284881	G	A	15284881	2	1	59	1	0	0	0	0	0	0	0	1	10579	1048	37	1		1	NOTCH3	19	15284881	Silent	SNP	G	TCGA-P6-A5OH-01A-11D-A30A-10	4187868	15284881	43844102	225	11827										
CRTC1	23373	broad.mit.edu	37	chr19	18856713	18856714	+	Frame_Shift_Ins	INS	-	-	G													0.0676691729323308	18	0.539713201460978	1.36467627545184	2.46691480562448	0.72067174096895	0.139785384641228	0.738095238095239	0	acagggtgtaccgggagcgtINSggccggctcggctccccaca					novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	CRTC1-1361	NM_001098482	exon4	c.372_373insG	p.R124fs	GGAGCGTGGCCGG	.	351	10	66	0	.	0	0	0	0	0	G	18856714	-	G	18856713	7	5	59	1	0	1	1	0	0	0	0	0	3905	1683	59	0	386	0	CRTC1	19	18856713	Frame_Shift_Ins	INS	-	TCGA-P6-A5OH-01A-11D-A30A-10	3571832	18856713	40272270	226	11828										
NCAN	1463	broad.mit.edu	37	chr19	19339014	19339014	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0676691729323308	18	0.539713201460978	1.36467627545184	2.46691480562448	0.72067174096895	0.139785384641228	0.738095238095239	0	aagcaccaccttgagccctcAggtggccctggatacaagca	10	14	1	1	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	NCAN-94	NM_004386	exon8	c.A2585C	p.Q862P	GCCCTCAGGTGGC	.	105	3	58	0	.	0	0	0	0	0	C	19339014	A	C	19339014	3	2	59	1	0	0	0	0	1	0	0	0	10233	188	7	5	2611	5	NCAN	19	19339014	Missense_Mutation	SNP	A	TCGA-P6-A5OH-01A-11D-A30A-10	482301	19339014	39789969	227	11829										
TSHZ3	57616	ucsc.edu;bcgsc.ca	37	chr19	31770605	31770605	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0676691729323308	18	0.539713201460978	1.36467627545184	2.46691480562448	0.72067174096895	0.139785384641228	0.738095238095239	0	atctgccgtatgctcctctgGgtctaaaccttcgtccacca	7	15	3	0	rs200205002		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	TSHZ3-232	NM_020856	exon2	c.C94T	p.P32S	CCTCTGGGTCTAA	.	39	5	26	0	G|0.999;A|0.001	0	0	0	0	0	A	31770605	G	A	31770605	3	1	59	1	0	0	0	0	1	0	0	0	16663	1232	43	3	3155	3	TSHZ3	19	31770605	Missense_Mutation	SNP	G	TCGA-P6-A5OH-01A-11D-A30A-10	12431591	31770605	27358378	228	11830										
GPATCH1	55094	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	33579080	33579080	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0676691729323308	18	0.539713201460978	1.36467627545184	2.46691480562448	0.72067174096895	0.139785384641228	0.738095238095239	0	atccctcttcaggatcagacTgtcagagatgaaaaaggaag	10	8	4	3	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	GPATCH1-91	NM_018025	exon2	c.T114A	p.T38T	TCAGACTGTCAGA	.	45	11	31	0	.	0	0	0	0	0	A	33579080	T	A	33579080	2	1	59	1	0	0	0	0	0	0	0	1	6610	1567	55	5		5	GPATCH1	19	33579080	Silent	SNP	T	TCGA-P6-A5OH-01A-11D-A30A-10	1808475	33579080	25549903	229	11831										
ETV2	2116	broad.mit.edu	37	chr19	36135558	36135558	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0676691729323308	18	0.539713201460978	1.36467627545184	2.46691480562448	0.72067174096895	0.139785384641228	0.738095238095239	0	cgggcctctgtcctaggtggCtcggctgtggggcgagcgca	18	12	1	0	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	ETV2-226	NM_014209	exon7	c.C833A	p.A278D	AGGTGGCTCGGCT	.	154	10	48	1	.	0	0	0	0	0	A	36135558	C	A	36135558	3	1	59	1	0	0	0	0	1	0	0	0	5291	797	28	3	855	3	ETV2	19	36135558	Missense_Mutation	SNP	C	TCGA-P6-A5OH-01A-11D-A30A-10	2556478	36135558	22993425	230	11832										
SIPA1L3	23094	hgsc.bcm.edu	37	chr19	38573068	38573068	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0676691729323308	18	0.539713201460978	1.36467627545184	2.46691480562448	0.72067174096895	0.139785384641228	0.738095238095239	0	gaaggcccggaagaaacctgCgcggggcctcggcggcgggg	20	12	0	1	rs150674546		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	SIPA1L3-91	NM_015073	exon3	c.C863T	p.A288V	AACCTGCGCGGGG	.	27	15	2	0	C|0.989;T|0.011	0	0	0	0	0	T	38573068	C	T	38573068	3	4	59	1	0	0	0	0	1	0	0	0	14366	768	27	1	865	1	SIPA1L3	19	38573068	Missense_Mutation	SNP	C	TCGA-P6-A5OH-01A-11D-A30A-10	2437510	38573068	20555915	231	11833										
GGN	199720	hgsc.bcm.edu	37	chr19	38876464	38876464	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0676691729323308	18	0.539713201460978	1.36467627545184	2.46691480562448	0.72067174096895	0.139785384641228	0.738095238095239	0	tgggggcagagcaggggctgCggtgggagccagggctgact	22	8	0	2	rs11083455		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	GGN-90	NM_152657	exon3	c.G1438C	p.A480P	GGGCTGCGGTGGG	.	11	6	0	0	C|0.789;G|0.211	0	0	0	0	0	G	38876464	C	G	38876464	3	3	59	1	0	0	0	0	1	0	0	0	6378	768	27	2	528	2	GGN	19	38876464	Missense_Mutation	SNP	C	TCGA-P6-A5OH-01A-11D-A30A-10	303396	38876464	20252519	232	11834										
FAM98C	147965	hgsc.bcm.edu	37	chr19	38894307	38894307	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0676691729323308	18	0.539713201460978	1.36467627545184	2.46691480562448	0.72067174096895	0.139785384641228	0.738095238095239	0	atggcgcggctgcgcttcggGaacccggtgccggactgcgc	17	14	0	0	rs150024474		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	FAM98C-91	NM_174905	exon3	c.G322A	p.E108K	CTTCGGGAACCCG	.	12	9	1	0	G|0.968;A|0.032	0	0	0	0	0	A	38894307	G	A	38894307	3	1	59	1	0	0	0	0	1	0	0	0	5677	1175	41	3	332	3	FAM98C	19	38894307	Missense_Mutation	SNP	G	TCGA-P6-A5OH-01A-11D-A30A-10	17843	38894307	20234676	233	11835										
MAP3K10	4294	hgsc.bcm.edu	37	chr19	40720079	40720079	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0676691729323308	18	0.539713201460978	1.36467627545184	2.46691480562448	0.72067174096895	0.139785384641228	0.738095238095239	0	caccggcggacgccatcggaCggggcgctggggcagcgggg	21	13	0	0	rs3746005		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	MAP3K10-981	NM_002446	exon9	c.C2493T	p.D831D	ATCGGACGGGGCG	.	4	4	0	0	C|0.260;T|0.740	0	0	0	0	0	T	40720079	C	T	40720079	2	4	59	1	0	0	0	0	0	0	0	1	9272	535	19	1		1	MAP3K10	19	40720079	Silent	SNP	C	TCGA-P6-A5OH-01A-11D-A30A-10	1825772	40720079	18408904	234	11836										
CYP2B6	1555	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	41509976	41509976	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0676691729323308	18	0.539713201460978	1.36467627545184	2.46691480562448	0.72067174096895	0.139785384641228	0.738095238095239	0	cgtggtcatgctgtgtggagTagaggccatacgggaggccc	17	9	1	1	rs138912615		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	CYP2B6-92	NM_000767	exon2	c.T242C	p.V81A	GTGGAGTAGAGGC	.	355	46	180	0	T|1.000;C|0.000	0	0	0	0	0	C	41509976	T	C	41509976	3	2	59	1	0	0	0	0	1	0	0	0	4170	1638	57	4	248	4	CYP2B6	19	41509976	Missense_Mutation	SNP	T	TCGA-P6-A5OH-01A-11D-A30A-10	789897	41509976	17619007	235	11837										
CEACAM6	4680	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr19	42270108	42270108	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0676691729323308	18	0.539713201460978	1.36467627545184	2.46691480562448	0.72067174096895	0.139785384641228	0.738095238095239	0	aaggaagtgctcctgtcctcTcagctgtggccaccgtcggc	12	14	1	0	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	CEACAM6-91	NM_002483	exon5	c.T976C	p.S326P	GTCCTCTCAGCTG	.	176	16	92	0	.	0	0	0	0	0	C	42270108	T	C	42270108	3	2	59	1	0	0	0	0	1	0	0	0	3202	1551	54	4	994	4	CEACAM6	19	42270108	Missense_Mutation	SNP	T	TCGA-P6-A5OH-01A-11D-A30A-10	760132	42270108	16858875	236	11838										
DMRTC2	63946	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	42354402	42354402	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0676691729323308	18	0.539713201460978	1.36467627545184	2.46691480562448	0.72067174096895	0.139785384641228	0.738095238095239	0	actcaactctgatactccagCcctgtggcaccccagaccct	6	18	2	2	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	DMRTC2-90	NM_001040283	exon7	c.C778G	p.P260A	CTCCAGCCCTGTG	.	127	20	92	0	.	0	0	0	0	0	G	42354402	C	G	42354402	3	3	59	1	0	0	0	0	1	0	0	0	4602	739	26	3	800	3	DMRTC2	19	42354402	Missense_Mutation	SNP	C	TCGA-P6-A5OH-01A-11D-A30A-10	84294	42354402	16774581	237	11839										
CIC	23152	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	42795782	42795782	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0676691729323308	18	0.539713201460978	1.36467627545184	2.46691480562448	0.72067174096895	0.139785384641228	0.738095238095239	0	gctgcctgggaaggtcctagTgcctctggccgcccctagca	13	15	1	0	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	CIC-591	NM_015125	exon11	c.T2771A	p.V924E	TCCTAGTGCCTCT	.	145	28	43	0	.	0	0	0	0	0	A	42795782	T	A	42795782	3	1	59	1	0	0	0	0	1	0	0	0	3430	1696	59	5	2813	5	CIC	19	42795782	Missense_Mutation	SNP	T	TCGA-P6-A5OH-01A-11D-A30A-10	441380	42795782	16333201	238	11840										
LYPD5	284348	broad.mit.edu	37	chr19	44302693	44302694	+	Frame_Shift_Ins	INS	-	-	CC													0.0676691729323308	18	0.539713201460978	1.36467627545184	2.46691480562448	0.72067174096895	0.139785384641228	0.738095238095239	0	cctgccgatagcgcagtcatINScctggtggaccccgatacag					novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	LYPD5-90	NM_001031749	exon4	c.431_432insGG	p.D144fs	CAGTCATCCTGGT	.	95	11	45	0	.	0	0	0	0	0	CC	44302694	-	CC	44302693	7	5	59	1	0	1	1	0	0	0	0	0	9141	1435	50	0	332	0	LYPD5	19	44302693	Frame_Shift_Ins	INS	-	TCGA-P6-A5OH-01A-11D-A30A-10	1506911	44302693	14826290	239	11841										
GRIN2D	2906	hgsc.bcm.edu	37	chr19	48945880	48945880	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0676691729323308	18	0.539713201460978	1.36467627545184	2.46691480562448	0.72067174096895	0.139785384641228	0.738095238095239	0	atgtacagctgctgcagcgcTgaggccgccccaccgcccgc	12	18	0	1	rs62130268		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	GRIN2D-156	NM_000836	exon13	c.T2697C	p.A899A	CAGCGCTGAGGCC	.	6	6	0	0	T|0.245;C|0.755	0	0	0	0	0	C	48945880	T	C	48945880	2	2	59	1	0	0	0	0	0	0	0	1	6803	1567	55	4		4	GRIN2D	19	48945880	Silent	SNP	T	TCGA-P6-A5OH-01A-11D-A30A-10	4643187	48945880	10183103	240	11842										
SCAF1	58506	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	50157674	50157674	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0676691729323308	18	0.539713201460978	1.36467627545184	2.46691480562448	0.72067174096895	0.139785384641228	0.738095238095239	0	cgaaggcccaggagctgatcCaggccaccaaccaggtgggc	14	14	0	1	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	SCAF1-68	NM_021228	exon8	c.C3385G	p.Q1129E	CTGATCCAGGCCA	.	196	37	97	0	.	0	0	0	0	0	G	50157674	C	G	50157674	3	3	59	1	0	0	0	0	1	0	0	0	13903	595	21	3	3411	3	SCAF1	19	50157674	Missense_Mutation	SNP	C	TCGA-P6-A5OH-01A-11D-A30A-10	1211794	50157674	8971309	241	11843										
MYH14	79784	hgsc.bcm.edu	37	chr19	50713814	50713814	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0676691729323308	18	0.539713201460978	1.36467627545184	2.46691480562448	0.72067174096895	0.139785384641228	0.738095238095239	0	gtgccttcggagcttcacggGttcgaggcggcggcgctgcg	18	12	1	0	rs181055215		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	MYH14-23	NM_001077186	exon2	c.G192T	p.G64G	TCACGGGTTCGAG	.	86	52	2	0	.	0	0	0	0	0	T	50713814	G	T	50713814	2	4	59	1	0	0	0	0	0	0	0	1	10061	1248	44	3		3	MYH14	19	50713814	Silent	SNP	G	TCGA-P6-A5OH-01A-11D-A30A-10	556140	50713814	8415169	242	11844										
LILRA4	23547	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	54849247	54849247	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0676691729323308	18	0.539713201460978	1.36467627545184	2.46691480562448	0.72067174096895	0.139785384641228	0.738095238095239	0	gggtcactgggttccgaccaCacgtatggggtgttgttttc	14	9	1	0	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	LILRA4-91	NM_012276	exon4	c.G615A	p.V205V	CGACCACACGTAT	.	102	16	65	0	.	0	0	0	0	0	T	54849247	C	T	54849247	2	4	59	1	0	0	0	0	0	0	0	1	8810	465	17	3		3	LILRA4	19	54849247	Silent	SNP	C	TCGA-P6-A5OH-01A-11D-A30A-10	4135433	54849247	4279736	243	11845										
LILRA2	11027	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr19	55098715	55098715	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0676691729323308	18	0.539713201460978	1.36467627545184	2.46691480562448	0.72067174096895	0.139785384641228	0.738095238095239	0	acacagtggagaatctcatcCgcatgggtgtggctggcttg	14	9	1	1	rs149580797	byfrequency	TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	LILRA2-91	NM_001130917	exon8	c.C1354T	p.R452C	CTCATCCGCATGG	.	266	36	142	0	C|0.996;T|0.004	0	0	0	0	0	T	55098715	C	T	55098715	3	4	59	1	0	0	0	0	1	0	0	0	8808	652	23	1	1384	1	LILRA2	19	55098715	Missense_Mutation	SNP	C	TCGA-P6-A5OH-01A-11D-A30A-10	249468	55098715	4030268	244	11846										
ZNF628	89887	hgsc.bcm.edu	37	chr19	55993260	55993260	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0676691729323308	18	0.539713201460978	1.36467627545184	2.46691480562448	0.72067174096895	0.139785384641228	0.738095238095239	0	gcgccgcccccgccccgggtAccgcctccgcggccccgccc	12	26	0	0	rs34864744		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	ZNF628-22	NM_033113	exon3	c.A700G	p.T234A	CCGGGTACCGCCT	.	4	4	0	0	A|0.270;G|0.730	0	0	0	0	0	G	55993260	A	G	55993260	3	3	59	1	0	0	0	0	1	0	0	0	18089	391	14	4	690	4	ZNF628	19	55993260	Missense_Mutation	SNP	A	TCGA-P6-A5OH-01A-11D-A30A-10	894545	55993260	3135723	245	11847										
SBK2	646643	hgsc.bcm.edu	37	chr19	56041209	56041210	+	Frame_Shift_Ins	INS	-	-	G													0.0676691729323308	18	0.539713201460978	1.36467627545184	2.46691480562448	0.72067174096895	0.139785384641228	0.738095238095239	0	gatcacagcgctcctccttcINSgggggtgagggtccagcagc					novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	SBK2-68	NM_001101401	exon4	c.938_939insC	p.R313fs	CTCCTTCGGGGGT	.	58	19	8	2	.	0	0	0	0	0	G	56041210	-	G	56041209	7	5	59	1	0	1	1	0	0	0	0	0	13896	884	31	0	111	0	SBK2	19	56041209	Frame_Shift_Ins	INS	-	TCGA-P6-A5OH-01A-11D-A30A-10	47949	56041209	3087774	246	11848										
ZNF784	147808	hgsc.bcm.edu	37	chr19	56133551	56133551	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0676691729323308	18	0.539713201460978	1.36467627545184	2.46691480562448	0.72067174096895	0.139785384641228	0.738095238095239	0	cgccgccgccatcaccacctCcgccctctccggggccaccc	8	25	2	0	rs200843026		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	ZNF784-68	NM_203374	exon2	c.G538A	p.E180K	CCACCTCCGCCCT	.	26	17	0	0	.	0	0	0	0	0	T	56133551	C	T	56133551	3	4	59	1	0	0	0	0	1	0	0	0	18193	864	30	3	437	3	ZNF784	19	56133551	Missense_Mutation	SNP	C	TCGA-P6-A5OH-01A-11D-A30A-10	92342	56133551	2995432	247	11849										
PEG3	5178	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	57335765	57335765	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.0676691729323308	18	0.539713201460978	1.36467627545184	2.46691480562448	0.72067174096895	0.139785384641228	0.738095238095239	0	ctgctcaaggaccaagagctCgatgatctcctccttggtgc	10	13	2	2	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	PEG3-164	NM_001146184	exon3	c.G259C	p.E87Q	AGAGCTCGATGAT	.	218	60	225	0	.	0	0	0	0	0	G	57335765	C	G	57335765	3	3	59	1	0	0	0	0	1	0	0	0	11749	893	31	2		2	PEG3	19	57335765	Missense_Mutation	SNP	C	TCGA-P6-A5OH-01A-11D-A30A-10	1202214	57335765	1793218	248	11850										
ZNF814	730051	hgsc.bcm.edu	37	chr19	58385790	58385790	+	Missense_Mutation	SNP	G	G	T													0.0676691729323308	18	0.539713201460978	1.36467627545184	2.46691480562448	0.72067174096895	0.139785384641228	0.738095238095239	0	cacattctccacattcataaGgtcttttcccagtgtgaact					rs111727691		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	.	NM_001144989	exon3	c.C968A	p.P323H	TCATAAGGTCTTT	.	108	15	42	0	G|0.500;T|0.500	0	0	0	0	0	T	58385790	G	T	58385790	3	4	59	1	0	0	0	0	1	0	0	0	18213	1000	35	3	1603	3	ZNF814	19	58385790	Missense_Mutation	SNP	G	TCGA-P6-A5OH-01A-11D-A30A-10	1050025	58385790	743193	249	11851	134	3								
ZNF814	730051	hgsc.bcm.edu	37	chr19	58385793	58385793	+	Missense_Mutation	SNP	C	C	T													0.0676691729323308	18	0.539713201460978	1.36467627545184	2.46691480562448	0.72067174096895	0.139785384641228	0.738095238095239	0	attctccacattcataaggtCttttcccagtgtgaactctc					rs113623532		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	.	NM_001144989	exon3	c.G965A	p.R322K	TAAGGTCTTTTCC	.	104	15	42	0	C|0.500;T|0.500	0	0	0	0	0	T	58385793	C	T	58385793	3	4	59	1	0	0	0	0	1	0	0	0	18213	913	32	3	1606	3	ZNF814	19	58385793	Missense_Mutation	SNP	C	TCGA-P6-A5OH-01A-11D-A30A-10	3	58385793	743190	250	11852	134	3								
ZNF814	730051	hgsc.bcm.edu	37	chr19	58385798	58385799	+	Missense_Mutation	DNP	CC	CC	TT													0.0676691729323308	18	0.539713201460978	1.36467627545184	2.46691480562448	0.72067174096895	0.139785384641228	0.738095238095239	0	ccacattcataaggtcttttCccagtgtgaactctctgatg					novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	CC	CC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	.	NM_001144989	exon3	c.G959A	p.G320E	CTTTTCCCAGTGT	.	100	7	35	0	.	0	0	0	0	0	TT	58385799	CC	TT	58385798	3	4	59	1	0	0	0	0	1	0	0	0	18213	842	30	3	1611	3	ZNF814	19	58385798	Missense_Mutation	DNP	CC	TCGA-P6-A5OH-01A-11D-A30A-10	5	58385798	743185	251	11853	134	3								
PANK2	80025	hgsc.bcm.edu	37	chr20	3870124	3870124	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0676691729323308	18	0.539713201460978	1.36467627545184	2.46691480562448	0.72067174096895	0.139785384641228	0.738095238095239	0	actgctgctgcggatgggagGgggccggctcggcgcgccca	19	13	0	0	rs3737084	byfrequency	TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	PANK2-115	NM_153638	exon1	c.G377C	p.G126A	TGGGAGGGGGCCG	.	6	6	0	0	G|0.122;C|0.878	0	0	0	0	0	C	3870124	G	C	3870124	3	2	59	1	0	0	0	0	1	0	0	0	11446	1232	43	3	379	3	PANK2	20	3870124	Missense_Mutation	SNP	G	TCGA-P6-A5OH-01A-11D-A30A-10		3870124	59155396	252	11854										
ACTR5	79913	hgsc.bcm.edu	37	chr20	37377139	37377139	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0676691729323308	18	0.539713201460978	1.36467627545184	2.46691480562448	0.72067174096895	0.139785384641228	0.738095238095239	0	aagatggcggcgaacgtgttCccgttccgcgacgcccgtgc	14	14	0	1	rs2254105	byfrequency	TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	ACTR5-90	NM_024855	exon1	c.C18T	p.F6F	CGTGTTCCCGTTC	.	21	12	0	0	C|0.769;T|0.231	0	0	0	0	0	T	37377139	C	T	37377139	2	4	59	1	0	0	0	0	0	0	0	1	215	854	30	3		3	ACTR5	20	37377139	Silent	SNP	C	TCGA-P6-A5OH-01A-11D-A30A-10	33507015	37377139	25648381	253	11855										
TOP1	7150	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr20	39746844	39746844	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0676691729323308	18	0.539713201460978	1.36467627545184	2.46691480562448	0.72067174096895	0.139785384641228	0.738095238095239	0	cagcgaagatcctttcttatAaccgtgccaatcgagctgtt	8	11	1	1	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	TOP1-1148	NM_003286	exon18	c.A1858T	p.N620Y	TCTTATAACCGTG	.	351	47	230	0	.	0	0	0	0	0	T	39746844	A	T	39746844	3	4	59	1	0	0	0	0	1	0	0	0	16401	362	13	5	1928	5	TOP1	20	39746844	Missense_Mutation	SNP	A	TCGA-P6-A5OH-01A-11D-A30A-10	2369705	39746844	23278676	254	11856										
PLCG1	5335	ucsc.edu;bcgsc.ca	37	chr20	39794128	39794128	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0676691729323308	18	0.539713201460978	1.36467627545184	2.46691480562448	0.72067174096895	0.139785384641228	0.738095238095239	0	tttgttctgaccagcagcaaGatctactactctgaggagac	9	10	3	4	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	PLCG1-911	NM_182811	exon15	c.G1548T	p.K516N	CAGCAAGATCTAC	.	218	44	152	4	.	0	0	0	0	0	T	39794128	G	T	39794128	3	4	59	1	0	0	0	0	1	0	0	0	12064	933	33	3	1606	3	PLCG1	20	39794128	Missense_Mutation	SNP	G	TCGA-P6-A5OH-01A-11D-A30A-10	47284	39794128	23231392	255	11857										
RBPJL	11317	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr20	43945172	43945172	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0676691729323308	18	0.539713201460978	1.36467627545184	2.46691480562448	0.72067174096895	0.139785384641228	0.738095238095239	0	ccacggagagaacttccacgCggggctcaaggtgtggtttg	15	10	1	1	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	RBPJL-227	NM_014276	exon11	c.C1232T	p.A411V	TCCACGCGGGGCT	.	397	25	193	0	.	0	0	0	0	0	T	43945172	C	T	43945172	3	4	59	1	0	0	0	0	1	0	0	0	13197	768	27	1	1274	1	RBPJL	20	43945172	Missense_Mutation	SNP	C	TCGA-P6-A5OH-01A-11D-A30A-10	4151044	43945172	19080348	256	11858										
ZSWIM3	140831	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr20	44505469	44505472	+	Frame_Shift_Del	DEL	TATT	TATT	-													0.0676691729323308	18	0.539713201460978	1.36467627545184	2.46691480562448	0.72067174096895	0.139785384641228	0.738095238095239	0	caacgagagactagatagacTatttatcagtgaactaaaca					novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	TATT	TATT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	ZSWIM3-92	NM_080752	exon2	c.272_275del	p.91_92del	ATAGACTATTTAT	.	194	40	117	0	.	0	0	0	0	0	-	44505472	TATT	-	44505469	7	5	59	1	0	1	0	1	0	0	0	0	18279	1522	53	0	278	0	ZSWIM3	20	44505469	Frame_Shift_Del	DEL	TATT	TCGA-P6-A5OH-01A-11D-A30A-10	560297	44505469	18520051	257	11859										
TMEM189	387521	hgsc.bcm.edu	37	chr20	48770159	48770159	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0676691729323308	18	0.539713201460978	1.36467627545184	2.46691480562448	0.72067174096895	0.139785384641228	0.738095238095239	0	cagctgctggcccggccagtTctcggcgcccgccatggcca	13	18	1	0	rs232733		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	TMEM189-22	NM_199129	exon1	c.A16G	p.N6D	GCCAGTTCTCGGC	.	5	5	0	0	C|0.999;T|0.001	0	0	0	0	0	C	48770159	T	C	48770159	3	2	59	1	0	0	0	0	1	0	0	0	16148	1783	62	4	820	4	TMEM189	20	48770159	Missense_Mutation	SNP	T	TCGA-P6-A5OH-01A-11D-A30A-10	4264690	48770159	14255361	258	11860										
RBM11	54033	broad.mit.edu	37	chr21	15592023	15592023	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0676691729323308	18	0.539713201460978	1.36467627545184	2.46691480562448	0.72067174096895	0.139785384641228	0.738095238095239	0	aattcgtttatatggaagacCaattaacgtgcagtatcgat	8	6	0	1	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	.	NM_144770	exon2	c.C236A	p.P79Q	GAAGACCAATTAA	.	194	6	208	0	.	0	0	0	0	0	A	15592023	C	A	15592023	3	1	59	1	0	0	0	0	1	0	0	0	13147	594	21	3	242	3	RBM11	21	15592023	Missense_Mutation	SNP	C	TCGA-P6-A5OH-01A-11D-A30A-10		15592023	32537872	259	11861										
SEPT5	5413	hgsc.bcm.edu	37	chr22	19706305	19706305	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0676691729323308	18	0.539713201460978	1.36467627545184	2.46691480562448	0.72067174096895	0.139785384641228	0.738095238095239	0	gaccgcctggtggagcagctGctgtcgccgcggacccaggc	16	15	0	0	rs187090154	by1000genomes	TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	SEPT5-636	NM_001009939	exon1	c.G45T	p.L15L	GCAGCTGCTGTCG	.	23	7	0	0	G|0.991;T|0.009	0	0	0	0	0	T	19706305	G	T	19706305	2	4	59	1	0	0	0	0	0	0	0	1	14102	1334	46	3		3	SEPT5	22	19706305	Silent	SNP	G	TCGA-P6-A5OH-01A-11D-A30A-10		19706305	31598261	260	11862										
PI4KA	5297	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr22	21150535	21150535	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0676691729323308	18	0.539713201460978	1.36467627545184	2.46691480562448	0.72067174096895	0.139785384641228	0.738095238095239	0	gttcatgagcagctcatccaCcaggtgctcgtcttggatgt	11	11	3	1	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	PI4KA-454	NM_058004	exon18	c.G2176C	p.V726L	CATCCACCAGGTG	.	229	64	192	0	.	0	0	0	0	0	G	21150535	C	G	21150535	3	3	59	1	0	0	0	0	1	0	0	0	11902	507	18	3	4284	3	PI4KA	22	21150535	Missense_Mutation	SNP	C	TCGA-P6-A5OH-01A-11D-A30A-10	1444230	21150535	30154031	261	11863										
PLA2G3	50487	bcgsc.ca	37	chr22	31535872	31535872	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0676691729323308	18	0.539713201460978	1.36467627545184	2.46691480562448	0.72067174096895	0.139785384641228	0.738095238095239	0	atctccaactccacaccacaGtgtgccaggcatggtccatc	7	16	1	0	rs2074735	byfrequency	TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	PLA2G3-226	NM_015715	exon1	c.C469G	p.L157V	ACCACAGTGTGCC	.	78	5	71	0	G|0.733;C|0.267	0	0	0	0	0	C	31535872	G	C	31535872	3	2	59	1	0	0	0	0	1	0	0	0	12029	1020	36	3	1088	3	PLA2G3	22	31535872	Missense_Mutation	SNP	G	TCGA-P6-A5OH-01A-11D-A30A-10	10385337	31535872	19768694	262	11864										
PACSIN2	11252	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr22	43289603	43289603	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0676691729323308	18	0.539713201460978	1.36467627545184	2.46691480562448	0.72067174096895	0.139785384641228	0.738095238095239	0	cgtcgatccgcttcacagtcCgcttgtagttcccgacctag	9	15	1	0	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	PACSIN2-68	NM_007229	exon3	c.G77A	p.R26Q	ACAGTCCGCTTGT	.	191	32	132	0	.	0	0	0	0	0	T	43289603	C	T	43289603	3	4	59	1	0	0	0	0	1	0	0	0	11404	652	23	1	1419	1	PACSIN2	22	43289603	Missense_Mutation	SNP	C	TCGA-P6-A5OH-01A-11D-A30A-10	11753731	43289603	8014963	263	11865										
VCX	26609	bcgsc.ca	37	chrX	7811812	7811812	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0676691729323308	18	0.539713201460978	1.36467627545184	2.46691480562448	0.72067174096895	0.139785384641228	0.738095238095239	0	aggtggaagaaccactgagtCaggagagccaggtggaggaa	17	6	1	3	rs144779201	byfrequency	TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	VCX-22	NM_013452	exon3	c.C376G	p.Q126E	CTGAGTCAGGAGA	.	147	7	200	0	C|0.996;G|0.004	0	0	0	0	0	G	7811812	C	G	7811812	3	3	59	1	0	0	0	0	1	0	0	0	17180	827	29	3	382	3	VCX	23	7811812	Missense_Mutation	SNP	C	TCGA-P6-A5OH-01A-11D-A30A-10		7811812	147458748	264	11866										
MAGEE2	139599	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	75003782	75003782	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0676691729323308	18	0.539713201460978	1.36467627545184	2.46691480562448	0.72067174096895	0.139785384641228	0.738095238095239	0	ctcactggtatcaacctcaaTcagagacaacccatagaaca	5	13	4	2	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	MAGEE2-132	NM_138703	exon1	c.A1105C	p.I369L	CCTCAATCAGAGA	.	53	11	79	0	.	0	0	0	0	0	G	75003782	T	G	75003782	3	3	59	1	0	0	0	0	1	0	0	0	9214	1435	50	5	470	5	MAGEE2	23	75003782	Missense_Mutation	SNP	T	TCGA-P6-A5OH-01A-11D-A30A-10	67191970	75003782	80266778	265	11867										
VSIG1	340547	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	107320488	107320488	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0676691729323308	18	0.539713201460978	1.36467627545184	2.46691480562448	0.72067174096895	0.139785384641228	0.738095238095239	0	gtgcctgaccttgacatcgaGctggagctggagccagaaac	13	11	0	3	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	VSIG1-132	NM_001170553	exon8	c.G1149C	p.E383D	CATCGAGCTGGAG	.	112	36	176	0	.	0	0	0	0	0	C	107320488	G	C	107320488	3	2	59	1	0	0	0	0	1	0	0	0	17260	962	34	3	1179	3	VSIG1	23	107320488	Missense_Mutation	SNP	G	TCGA-P6-A5OH-01A-11D-A30A-10	32316706	107320488	47950072	266	11868										
RHOXF1	158800	broad.mit.edu;ucsc.edu	37	chrX	119249707	119249707	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0676691729323308	18	0.539713201460978	1.36467627545184	2.46691480562448	0.72067174096895	0.139785384641228	0.738095238095239	0	gcccccagctgaggtgtgggGcttatttttacctggtatac	12	10	0	1	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	RHOXF1-130	NM_139282	exon1	c.C66A	p.S22R	TGTGGGGCTTATT	.	41	5	36	0	.	0	0	0	0	0	T	119249707	G	T	119249707	3	4	59	1	0	0	0	0	1	0	0	0	13382	1194	42	3	500	3	RHOXF1	23	119249707	Missense_Mutation	SNP	G	TCGA-P6-A5OH-01A-11D-A30A-10	11929219	119249707	36020853	267	11869										
DCAF12L1	139170	hgsc.bcm.edu;broad.mit.edu	37	chrX	125685583	125685583	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0676691729323308	18	0.539713201460978	1.36467627545184	2.46691480562448	0.72067174096895	0.139785384641228	0.738095238095239	0	gggccggatgttctgctggtCctggcgcagatccaggaaag	16	10	1	1	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	DCAF12L1-132	NM_178470	exon1	c.G1009A	p.D337N	GCTGGTCCTGGCG	.	180	11	223	0	.	0	0	0	0	0	T	125685583	C	T	125685583	3	4	59	1	0	0	0	0	1	0	0	0	4270	855	30	3	386	3	DCAF12L1	23	125685583	Missense_Mutation	SNP	C	TCGA-P6-A5OH-01A-11D-A30A-10	6435876	125685583	29584977	268	11870										
DCAF12L1	139170	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chrX	125685622	125685622	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0676691729323308	18	0.539713201460978	1.36467627545184	2.46691480562448	0.72067174096895	0.139785384641228	0.738095238095239	0	agagacgtgggaatgggagcCcacggcgtacacagacatat	14	9	0	2	novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	DCAF12L1-132	NM_178470	exon1	c.G970A	p.G324S	GGGAGCCCACGGC	.	268	18	285	0	.	0	0	0	0	0	T	125685622	C	T	125685622	3	4	59	1	0	0	0	0	1	0	0	0	4270	623	22	3	425	3	DCAF12L1	23	125685622	Missense_Mutation	SNP	C	TCGA-P6-A5OH-01A-11D-A30A-10	39	125685622	29584938	269	11871										
GPC3	2719	hgsc.bcm.edu;bcgsc.ca	37	chrX	132730533	132730535	+	In_Frame_Del	DEL	TCT	TCT	-													0.0676691729323308	18	0.539713201460978	1.36467627545184	2.46691480562448	0.72067174096895	0.139785384641228	0.738095238095239	0	cagagcctccaatgcactcaTcttcatcatcaccgcagtct					novel		TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10	TCT	TCT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	GPC3-847	NM_001164617	exon8	c.1575_1577del	p.525_526del	CACTCATCTTCAT	.	269	62	396	1	.	0	0	0	0	0	-	132730535	TCT	-	132730533	7	5	59	1	0	1	0	1	0	0	0	0	6619	1435	50	0	242	0	GPC3	23	132730533	In_Frame_Del	DEL	TCT	TCGA-P6-A5OH-01A-11D-A30A-10	7044911	132730533	22540027	270	11872										
PLXNA3	55558	broad.mit.edu	37	chrX	153689643	153689643	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0676691729323308	18	0.539713201460978	1.36467627545184	2.46691480562448	0.72067174096895	0.139785384641228	0.738095238095239	0	ccaagatcgtgcgcatgtgcGcgggagactcagagttctac	13	11	2	3	rs145244142	byfrequency	TCGA-P6-A5OH-01A-11D-A30A-10	TCGA-P6-A5OH-11A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	5632f8dc-6bed-4bbd-be97-3b2512028431	5f342e4b-0132-4834-8eb1-7654c0ddfdf2	.	PLXNA3-132	NM_017514	exon3	c.G799A	p.A267T	ATGTGCGCGGGAG	.	233	6	85	0	G|0.999;A|0.001	0	0	0	0	0	A	153689643	G	A	153689643	3	1	59	1	0	0	0	0	1	0	0	0	12150	1087	38	1	805	1	PLXNA3	23	153689643	Missense_Mutation	SNP	G	TCGA-P6-A5OH-01A-11D-A30A-10	20959110	153689643	1580917	271	11873										
SRRM1	10250	ucsc.edu	37	chr1	24978030	24978030	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0416666666666667	2	1	0.831469979296066	2.18260869565217	0.513554987212276	1	1	0	cccctgctccagaaaagaagGaaaaaactccagagctccca	7	14	0	3	novel		TCGA-PA-A5YG-01A-11D-A29I-10	TCGA-PA-A5YG-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	bc84db10-201a-4c8c-b43f-6a4557ecd98c	13f7f8b4-77e2-4100-b2fe-c35064ead1ea	.	SRRM1-93	NM_005839	exon6	c.G652A	p.E218K	AAGAAGGAAAAAA	.	97	1	94	1	.	9	9	0	0	0	A	24978030	G	A	24978030	3	1	60	1	0	0	0	0	1	0	0	0	15205	1175	41	3	674	3	SRRM1	1	24978030	Missense_Mutation	SNP	G	TCGA-PA-A5YG-01A-11D-A29I-10		24978030	224272591	1	11874										
MAST2	23139	bcgsc.ca	37	chr1	46493460	46493460	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0416666666666667	2	1	0.831469979296066	2.18260869565217	0.513554987212276	1	1	0	gactttggactgtccaaaatTggcctcatgagtctgacaac	9	10	2	2	rs1707336	byfrequency	TCGA-PA-A5YG-01A-11D-A29I-10	TCGA-PA-A5YG-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	bc84db10-201a-4c8c-b43f-6a4557ecd98c	13f7f8b4-77e2-4100-b2fe-c35064ead1ea	.	MAST2-581	NM_015112	exon17	c.T1977G	p.I659M	CAAAATTGGCCTC	.	217	6	197	0	G|0.475;N|0.000	10	10	0	0	0	G	46493460	T	G	46493460	3	3	60	1	0	0	0	0	1	0	0	0	9353	1800	63	5	2043	5	MAST2	1	46493460	Missense_Mutation	SNP	T	TCGA-PA-A5YG-01A-11D-A29I-10	21515430	46493460	202757161	2	11875										
HIST2H3D	653604	broad.mit.edu	37	chr1	149784860	149784861	+	Frame_Shift_Del	DEL	TG	TG	-													0.0416666666666667	2	1	0.831469979296066	2.18260869565217	0.513554987212276	1	1	0	cgcggatgcggcgggccaacTggatgtccttgggcatgatg					novel		TCGA-PA-A5YG-01A-11D-A29I-10	TCGA-PA-A5YG-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	bc84db10-201a-4c8c-b43f-6a4557ecd98c	13f7f8b4-77e2-4100-b2fe-c35064ead1ea	.	HIST2H3D-22	NM_001123375	exon1	c.376_377del	p.126_126del	GCCAACTGGATGT	.	611	11	315	0	.	0	0	0	0	0	-	149784861	TG	-	149784860	7	5	60	1	0	1	0	1	0	0	0	0	7202	1580	55	0	35	0	HIST2H3D	1	149784860	Frame_Shift_Del	DEL	TG	TCGA-PA-A5YG-01A-11D-A29I-10	103291400	149784860	99465761	3	11876										
DENND4B	9909	hgsc.bcm.edu	37	chr1	153907287	153907287	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0416666666666667	2	1	0.831469979296066	2.18260869565217	0.513554987212276	1	1	0	tgacacctgctcctgctgctGctgctgctgctgctgctgtt	11	14	0	1	rs199597671		TCGA-PA-A5YG-01A-11D-A29I-10	TCGA-PA-A5YG-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	bc84db10-201a-4c8c-b43f-6a4557ecd98c	13f7f8b4-77e2-4100-b2fe-c35064ead1ea	.	DENND4B-69	NM_014856	exon18	c.C2722G	p.Q908E	GCTGCTGCTGCTG	.	113	6	63	0	.	5	5	0	0	0	C	153907287	G	C	153907287	3	2	60	1	0	0	0	0	1	0	0	0	4445	1328	46	3	1812	3	DENND4B	1	153907287	Missense_Mutation	SNP	G	TCGA-PA-A5YG-01A-11D-A29I-10	4122427	153907287	95343334	4	11877										
NCOA1	8648	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	24951320	24951320	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0416666666666667	2	1	0.831469979296066	2.18260869565217	0.513554987212276	1	1	0	gctagctgaactagacagagCtctgggaattgacaaacttg	11	8	1	4	novel		TCGA-PA-A5YG-01A-11D-A29I-10	TCGA-PA-A5YG-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	bc84db10-201a-4c8c-b43f-6a4557ecd98c	13f7f8b4-77e2-4100-b2fe-c35064ead1ea	.	NCOA1-228	NM_147223	exon14	c.C2861T	p.A954V	ACAGAGCTCTGGG	.	64	27	64	0	.	24	13	11	0	0	T	24951320	C	T	24951320	3	4	60	1	0	0	0	0	1	0	0	0	10257	797	28	3	2907	3	NCOA1	2	24951320	Missense_Mutation	SNP	C	TCGA-PA-A5YG-01A-11D-A29I-10		24951320	218248053	5	11878										
ST6GAL2	84620	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	107423245	107423245	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0416666666666667	2	1	0.831469979296066	2.18260869565217	0.513554987212276	1	1	0	tgcgtgcccatgttcaggcgCtgcaccaggagcttctcata	11	13	2	0	novel		TCGA-PA-A5YG-01A-11D-A29I-10	TCGA-PA-A5YG-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	bc84db10-201a-4c8c-b43f-6a4557ecd98c	13f7f8b4-77e2-4100-b2fe-c35064ead1ea	.	ST6GAL2-191	NM_032528	exon6	c.G1479T	p.Q493H	CAGGCGCTGCACC	.	159	32	120	1	.	0	0	0	0	0	A	107423245	C	A	107423245	3	1	60	1	0	0	0	0	1	0	0	0	15259	796	28	3	114	3	ST6GAL2	2	107423245	Missense_Mutation	SNP	C	TCGA-PA-A5YG-01A-11D-A29I-10	82471925	107423245	135776128	6	11879										
FAM171B	165215	ucsc.edu	37	chr2	187559047	187559047	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0416666666666667	2	1	0.831469979296066	2.18260869565217	0.513554987212276	1	1	0	caacagcagcagcagcagcaGcaacaacaacaacaacagca	7	14	0	0	rs73979342		TCGA-PA-A5YG-01A-11D-A29I-10	TCGA-PA-A5YG-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	bc84db10-201a-4c8c-b43f-6a4557ecd98c	13f7f8b4-77e2-4100-b2fe-c35064ead1ea	.	FAM171B-141	NM_177454	exon1	c.G147A	p.Q49Q	GCAGCAGCAACAA	.	135	16	88	0	G|0.500;A|0.500	29	18	11	0	0	A	187559047	G	A	187559047	2	1	60	1	0	0	0	0	0	0	0	1	5507	962	34	3		3	FAM171B	2	187559047	Silent	SNP	G	TCGA-PA-A5YG-01A-11D-A29I-10	80135802	187559047	55640326	7	11880										
NBEAL2	23218	broad.mit.edu	37	chr3	47043602	47043602	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0416666666666667	2	1	0.831469979296066	2.18260869565217	0.513554987212276	1	1	0	cagcagctgcagcagctgcaGagcgctgctcctggctggtg	15	13	0	1	novel		TCGA-PA-A5YG-01A-11D-A29I-10	TCGA-PA-A5YG-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	bc84db10-201a-4c8c-b43f-6a4557ecd98c	13f7f8b4-77e2-4100-b2fe-c35064ead1ea	.	NBEAL2-69	NM_015175	exon31	c.G4975A	p.E1659K	GCTGCAGAGCGCT	.	73	3	35	0	.	4	4	0	0	0	A	47043602	G	A	47043602	3	1	60	1	0	0	0	0	1	0	0	0	10217	943	33	3	5097	3	NBEAL2	3	47043602	Missense_Mutation	SNP	G	TCGA-PA-A5YG-01A-11D-A29I-10		47043602	150978828	8	11881										
PLXND1	23129	bcgsc.ca	37	chr3	129285429	129285429	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0416666666666667	2	1	0.831469979296066	2.18260869565217	0.513554987212276	1	1	0	ggagctgccctgggagttgaGggtctgggagggcagcacgt	20	8	1	1	novel		TCGA-PA-A5YG-01A-11D-A29I-10	TCGA-PA-A5YG-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	bc84db10-201a-4c8c-b43f-6a4557ecd98c	13f7f8b4-77e2-4100-b2fe-c35064ead1ea	.	PLXND1-90	NM_015103	exon23	c.C4132A	p.L1378I	AGTTGAGGGTCTG	.	79	4	63	0	.	30	30	0	0	0	T	129285429	G	T	129285429	3	4	60	1	0	0	0	0	1	0	0	0	12156	1000	35	3	1701	3	PLXND1	3	129285429	Missense_Mutation	SNP	G	TCGA-PA-A5YG-01A-11D-A29I-10	82241827	129285429	68737001	9	11882										
MUC4	4585	bcgsc.ca	37	chr3	195505805	195505805	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0416666666666667	2	1	0.831469979296066	2.18260869565217	0.513554987212276	1	1	0	ggcgtgacctgtggatgctgAggaagtgtcggtgacaggaa	18	6	0	3	novel		TCGA-PA-A5YG-01A-11D-A29I-10	TCGA-PA-A5YG-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	bc84db10-201a-4c8c-b43f-6a4557ecd98c	13f7f8b4-77e2-4100-b2fe-c35064ead1ea	.	MUC4-90	NM_018406	exon2	c.T12646G	p.S4216A	ATGCTGAGGAAGT	.	646	34	306	8	.	0	0	0	0	0	C	195505805	A	C	195505805	3	2	60	1	0	0	0	0	1	0	0	0	10006	304	11	5		5	MUC4	3	195505805	Missense_Mutation	SNP	A	TCGA-PA-A5YG-01A-11D-A29I-10	66220376	195505805	2516625	10	11883										
UGT2B15	7366	bcgsc.ca	37	chr4	69536084	69536084	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0416666666666667	2	1	0.831469979296066	2.18260869565217	0.513554987212276	1	1	0	cagaagagaatcttccaaatAatttttagttaaagatgtag	7	4	1	3	rs1902023	byfrequency	TCGA-PA-A5YG-01A-11D-A29I-10	TCGA-PA-A5YG-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	bc84db10-201a-4c8c-b43f-6a4557ecd98c	13f7f8b4-77e2-4100-b2fe-c35064ead1ea	.	UGT2B15-46	NM_001076	exon1	c.T253G	p.Y85D	CCAAATAATTTTT	.	289	10	294	2	A|0.468;C|0.532	0	0	0	0	0	C	69536084	A	C	69536084	3	2	60	1	0	0	0	0	1	0	0	0	16996	362	13	5	2980	5	UGT2B15	4	69536084	Missense_Mutation	SNP	A	TCGA-PA-A5YG-01A-11D-A29I-10		69536084	121618192	11	11884										
ADH1A	124	ucsc.edu	37	chr4	100203572	100203572	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0416666666666667	2	1	0.831469979296066	2.18260869565217	0.513554987212276	1	1	0	tcagtcatttcctttagcacCtcctggatgggtttcttgta	8	10	3	0	novel		TCGA-PA-A5YG-01A-11D-A29I-10	TCGA-PA-A5YG-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	bc84db10-201a-4c8c-b43f-6a4557ecd98c	13f7f8b4-77e2-4100-b2fe-c35064ead1ea	.	ADH1A-227	NM_000667	exon6	c.G759A	p.E253E	TAGCACCTCCTGG	.	404	15	282	16	.	1788	1	1785	1	1	T	100203572	C	T	100203572	2	4	60	1	0	0	0	0	0	0	0	1	307	680	24	3		3	ADH1A	4	100203572	Silent	SNP	C	TCGA-PA-A5YG-01A-11D-A29I-10	30667488	100203572	90950704	12	11885										
PCDHB3	56132	ucsc.edu	37	chr5	140482342	140482342	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0416666666666667	2	1	0.831469979296066	2.18260869565217	0.513554987212276	1	1	0	gtgtcttcgctcttcctcttTtcggtgctcctgttcgtggc	10	13	3	0	rs17844403	bycluster;byfrequency	TCGA-PA-A5YG-01A-11D-A29I-10	TCGA-PA-A5YG-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	bc84db10-201a-4c8c-b43f-6a4557ecd98c	13f7f8b4-77e2-4100-b2fe-c35064ead1ea	.	PCDHB3-92	NM_018937	exon1	c.T2109C	p.F703F	CCTCTTTTCGGTG	.	67	9	11	0	T|0.997;C|0.003	34	10	24	0	0	C	140482342	T	C	140482342	2	2	60	1	0	0	0	0	0	0	0	1	11572	1838	64	4		4	PCDHB3	5	140482342	Silent	SNP	T	TCGA-PA-A5YG-01A-11D-A29I-10		140482342	40432918	13	11886										
LAMA2	3908	bcgsc.ca	37	chr6	129722453	129722453	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0416666666666667	2	1	0.831469979296066	2.18260869565217	0.513554987212276	1	1	0	acatactcgatgaagccaacCgtcttgcagatgaaatcaac	7	11	2	3	rs56173620	byfrequency	TCGA-PA-A5YG-01A-11D-A29I-10	TCGA-PA-A5YG-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	bc84db10-201a-4c8c-b43f-6a4557ecd98c	13f7f8b4-77e2-4100-b2fe-c35064ead1ea	.	LAMA2-162	NM_000426	exon38	c.C5530A	p.R1844S	GCCAACCGTCTTG	.	88	4	67	0	C|0.989;A|0.011	0	0	0	0	0	A	129722453	C	A	129722453	3	1	60	1	0	0	0	0	1	0	0	0	8628	652	23	2	5680	2	LAMA2	6	129722453	Missense_Mutation	SNP	C	TCGA-PA-A5YG-01A-11D-A29I-10		129722453	41392614	14	11887										
POU5F1B	5462	bcgsc.ca	37	chr8	128428621	128428621	+	Silent	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0416666666666667	2	1	0.831469979296066	2.18260869565217	0.513554987212276	1	1	0	caggccgatgtggggctcatCctgggggttctatttgggaa	16	8	2	0	novel		TCGA-PA-A5YG-01A-11D-A29I-10	TCGA-PA-A5YG-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	bc84db10-201a-4c8c-b43f-6a4557ecd98c	13f7f8b4-77e2-4100-b2fe-c35064ead1ea	.	.	NM_001159542	exon1	c.C510A	p.I170I	GCTCATCCTGGGG	.	30	4	45	0	.	0	0	0	0	0	A	128428621	C	A	128428621	2	1	60	1	0	0	0	0	0	0	0	1	12311	845	30	3		3	POU5F1B	8	128428621	Silent	SNP	C	TCGA-PA-A5YG-01A-11D-A29I-10		128428621	17935401	15	11888										
GNAQ	2776	broad.mit.edu	37	chr9	80646047	80646047	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0416666666666667	2	1	0.831469979296066	2.18260869565217	0.513554987212276	1	1	0	agcttgagctcccggcgggcGtcccgcttgtccctgcggag	15	15	0	1	novel		TCGA-PA-A5YG-01A-11D-A29I-10	TCGA-PA-A5YG-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	bc84db10-201a-4c8c-b43f-6a4557ecd98c	13f7f8b4-77e2-4100-b2fe-c35064ead1ea	.	GNAQ-3808	NM_002072	exon1	c.C105T	p.D35D	GCGGGCGTCCCGC	.	100	10	18	0	.	4	4	0	0	0	A	80646047	G	A	80646047	2	1	60	1	0	0	0	0	0	0	0	1	6529	1136	40	1		1	GNAQ	9	80646047	Silent	SNP	G	TCGA-PA-A5YG-01A-11D-A29I-10		80646047	60567384	16	11889										
COL15A1	1306	ucsc.edu	37	chr9	101748114	101748114	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0416666666666667	2	1	0.831469979296066	2.18260869565217	0.513554987212276	1	1	0	ggtcatctacctgggcctgcGgctctcaggtgtggaggacg	16	11	3	0	novel		TCGA-PA-A5YG-01A-11D-A29I-10	TCGA-PA-A5YG-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	bc84db10-201a-4c8c-b43f-6a4557ecd98c	13f7f8b4-77e2-4100-b2fe-c35064ead1ea	.	COL15A1-96	NM_001855	exon3	c.G368A	p.R123Q	GCCTGCGGCTCTC	.	140	2	113	0	.	64	34	30	0	0	A	101748114	G	A	101748114	3	1	60	1	0	0	0	0	1	0	0	0	3678	1116	39	1	378	1	COL15A1	9	101748114	Missense_Mutation	SNP	G	TCGA-PA-A5YG-01A-11D-A29I-10	21102067	101748114	39465317	17	11890										
KIAA0368	23392	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr9	114195628	114195628	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0416666666666667	2	1	0.831469979296066	2.18260869565217	0.513554987212276	1	1	0	aggcacctgttcagcttctaTgaatttcacgattcccaatt	6	11	3	1	novel		TCGA-PA-A5YG-01A-11D-A29I-10	TCGA-PA-A5YG-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	bc84db10-201a-4c8c-b43f-6a4557ecd98c	13f7f8b4-77e2-4100-b2fe-c35064ead1ea	.	KIAA0368-68	NM_001080398	exon9	c.A1267G	p.I423V	CTTCTATGAATTT	.	152	8	120	0	.	14	14	0	0	0	C	114195628	T	C	114195628	3	2	60	1	0	0	0	0	1	0	0	0	8192	1464	51	4	4958	4	KIAA0368	9	114195628	Missense_Mutation	SNP	T	TCGA-PA-A5YG-01A-11D-A29I-10	12447514	114195628	27017803	18	11891										
FRMD4A	55691	hgsc.bcm.edu	37	chr10	13699100	13699100	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0416666666666667	2	1	0.831469979296066	2.18260869565217	0.513554987212276	1	1	0	actccttgatgcggtactgcGagctgggctggctctggctg	15	11	1	1	novel		TCGA-PA-A5YG-01A-11D-A29I-10	TCGA-PA-A5YG-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	bc84db10-201a-4c8c-b43f-6a4557ecd98c	13f7f8b4-77e2-4100-b2fe-c35064ead1ea	.	FRMD4A-229	NM_018027	exon22	c.C2489A	p.S830X	TACTGCGAGCTGG	.	28	20	5	0	.	0	0	0	0	0	T	13699100	G	T	13699100	4	4	60	1	0	0	0	0	0	1	0	0	6070	1059	37	2	642	2	FRMD4A	10	13699100	Nonsense_Mutation	SNP	G	TCGA-PA-A5YG-01A-11D-A29I-10		13699100	121835647	19	11892										
STAM	8027	broad.mit.edu	37	chr10	17730077	17730077	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0416666666666667	2	1	0.831469979296066	2.18260869565217	0.513554987212276	1	1	0	ctcttatggttgaatggacaGatgaatttaagaatgatcca	9	5	1	5	novel		TCGA-PA-A5YG-01A-11D-A29I-10	TCGA-PA-A5YG-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	bc84db10-201a-4c8c-b43f-6a4557ecd98c	13f7f8b4-77e2-4100-b2fe-c35064ead1ea	.	STAM-154	NM_003473	exon5	c.G349C	p.D117H	TGGACAGATGAAT	.	117	4	120	0	.	5	5	0	0	0	C	17730077	G	C	17730077	3	2	60	1	0	0	0	0	1	0	0	0	15285	942	33	3	367	3	STAM	10	17730077	Missense_Mutation	SNP	G	TCGA-PA-A5YG-01A-11D-A29I-10	4030977	17730077	117804670	20	11893										
IDE	3416	broad.mit.edu	37	chr10	94268534	94268534	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0416666666666667	2	1	0.831469979296066	2.18260869565217	0.513554987212276	1	1	0	ccaggaccttcatgcccaatGagatgaccaagataatgacc	8	12	1	4	rs201815833	alternate_allele	TCGA-PA-A5YG-01A-11D-A29I-10	TCGA-PA-A5YG-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	bc84db10-201a-4c8c-b43f-6a4557ecd98c	13f7f8b4-77e2-4100-b2fe-c35064ead1ea	.	IDE-92	NM_004969	exon7	c.C1011A	p.L337L	CCCAATGAGATGA	.	109	5	111	0	.	16	16	0	0	0	T	94268534	G	T	94268534	2	4	60	1	0	0	0	0	0	0	0	1	7514	1277	45	3		3	IDE	10	94268534	Silent	SNP	G	TCGA-PA-A5YG-01A-11D-A29I-10	76538457	94268534	41266213	21	11894										
ERLIN1	10613	bcgsc.ca	37	chr10	101912064	101912064	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0416666666666667	2	1	0.831469979296066	2.18260869565217	0.513554987212276	1	1	0	gatcttactgttagaagcaaTggcctggtactttttgagct	10	7	1	2	rs2862954	byfrequency	TCGA-PA-A5YG-01A-11D-A29I-10	TCGA-PA-A5YG-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	bc84db10-201a-4c8c-b43f-6a4557ecd98c	13f7f8b4-77e2-4100-b2fe-c35064ead1ea	.	.	NM_006459	exon11	c.A871G	p.I291V	AAGCAATGGCCTG	.	180	6	150	1	A|0.005;C|0.270	24	24	0	0	0	C	101912064	T	C	101912064	3	2	60	1	0	0	0	0	1	0	0	0	5245	1464	51	4	179	4	ERLIN1	10	101912064	Missense_Mutation	SNP	T	TCGA-PA-A5YG-01A-11D-A29I-10	7643530	101912064	33622683	22	11895										
MUC2	4583	broad.mit.edu	37	chr11	1093292	1093292	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0416666666666667	2	1	0.831469979296066	2.18260869565217	0.513554987212276	1	1	0	atcgacacccatcaccaccaCcactacggtgaccccaaccc	4	21	1	1	novel		TCGA-PA-A5YG-01A-11D-A29I-10	TCGA-PA-A5YG-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	bc84db10-201a-4c8c-b43f-6a4557ecd98c	13f7f8b4-77e2-4100-b2fe-c35064ead1ea	.	MUC2-90	NM_002457	exon30	c.C5111T	p.T1704I	CCACCACCACTAC	.	132	4	86	0	.	0	0	0	0	0	T	1093292	C	T	1093292	3	4	60	1	0	0	0	0	1	0	0	0	10003	507	18	3	5229	3	MUC2	11	1093292	Missense_Mutation	SNP	C	TCGA-PA-A5YG-01A-11D-A29I-10		1093292	133913224	23	11896										
MUC5B	727897	hgsc.bcm.edu	37	chr11	1271221	1271221	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0416666666666667	2	1	0.831469979296066	2.18260869565217	0.513554987212276	1	1	0	cagtgctgaccacgaaggccAccacgacaagggccaccagt	11	15	0	1	novel		TCGA-PA-A5YG-01A-11D-A29I-10	TCGA-PA-A5YG-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	bc84db10-201a-4c8c-b43f-6a4557ecd98c	13f7f8b4-77e2-4100-b2fe-c35064ead1ea	.	.	NM_002458	exon31	c.A13111G	p.T4371A	AAGGCCACCACGA	.	549	23	462	0	.	0	0	0	0	0	G	1271221	A	G	1271221	3	3	60	1	0	0	0	0	1	0	0	0	10007	159	6	4	13242	4	MUC5B	11	1271221	Missense_Mutation	SNP	A	TCGA-PA-A5YG-01A-11D-A29I-10	177929	1271221	133735295	24	11897										
SYT8	90019	bcgsc.ca	37	chr11	1858262	1858262	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0416666666666667	2	1	0.831469979296066	2.18260869565217	0.513554987212276	1	1	0	gacagccaccaaaaagggcaCggcggccccctacttcaatg	10	15	1	0	rs484955	byfrequency	TCGA-PA-A5YG-01A-11D-A29I-10	TCGA-PA-A5YG-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	bc84db10-201a-4c8c-b43f-6a4557ecd98c	13f7f8b4-77e2-4100-b2fe-c35064ead1ea	.	SYT8-91	NM_138567	exon8	c.C908T	p.T303M	AGGGCACGGCGGC	.	121	8	189	1	C|0.863;T|0.137	0	0	0	0	0	T	1858262	C	T	1858262	3	4	60	1	0	0	0	0	1	0	0	0	15517	536	19	1	938	1	SYT8	11	1858262	Missense_Mutation	SNP	C	TCGA-PA-A5YG-01A-11D-A29I-10	587041	1858262	133148254	25	11898										
PGAP2	27315	broad.mit.edu	37	chr11	3845156	3845156	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0416666666666667	2	1	0.831469979296066	2.18260869565217	0.513554987212276	1	1	0	gagctcagccatcggcggggAggtgccccagcgctacgtgt	16	13	1	0	novel		TCGA-PA-A5YG-01A-11D-A29I-10	TCGA-PA-A5YG-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	bc84db10-201a-4c8c-b43f-6a4557ecd98c	13f7f8b4-77e2-4100-b2fe-c35064ead1ea	.	PGAP2-90	NM_001256236	exon5	c.A563G	p.E188G	GCGGGGAGGTGCC	.	81	30	20	3	.	10	10	0	0	0	G	3845156	A	G	3845156	3	3	60	1	0	0	0	0	1	0	0	0	11807	304	11	4	581	4	PGAP2	11	3845156	Missense_Mutation	SNP	A	TCGA-PA-A5YG-01A-11D-A29I-10	1986894	3845156	131161360	26	11899										
PTPRJ	5795	bcgsc.ca	37	chr11	48166267	48166267	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0416666666666667	2	1	0.831469979296066	2.18260869565217	0.513554987212276	1	1	0	gtcctgaaatacacgtatgaGgatttcaaaaagggagcctc	10	8	1	2	rs4752904	byfrequency	TCGA-PA-A5YG-01A-11D-A29I-10	TCGA-PA-A5YG-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	bc84db10-201a-4c8c-b43f-6a4557ecd98c	13f7f8b4-77e2-4100-b2fe-c35064ead1ea	.	PTPRJ-541	NM_002843	exon13	c.G2616C	p.E872D	GTATGAGGATTTC	.	112	5	133	1	G|0.569;C|0.431	0	0	0	0	0	C	48166267	G	C	48166267	3	2	60	1	0	0	0	0	1	0	0	0	12839	991	35	3	2675	3	PTPRJ	11	48166267	Missense_Mutation	SNP	G	TCGA-PA-A5YG-01A-11D-A29I-10	44321111	48166267	86840249	27	11900										
ATN1	1822	hgsc.bcm.edu;ucsc.edu	37	chr12	7045900	7045900	+	Silent	SNP	G	G	A													0.0416666666666667	2	1	0.831469979296066	2.18260869565217	0.513554987212276	1	1	0	cagcaacagcaacagcagcaGcagcagcagcagcagcagca					rs142238167	byfrequency	TCGA-PA-A5YG-01A-11D-A29I-10	TCGA-PA-A5YG-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	bc84db10-201a-4c8c-b43f-6a4557ecd98c	13f7f8b4-77e2-4100-b2fe-c35064ead1ea	.	ATN1-139	NM_001007026	exon5	c.G1470A	p.Q490Q	GCAGCAGCAGCAG	.	209	18	118	0	G|0.985;A|0.015	252	247	5	0	0	A	7045900	G	A	7045900	2	1	60	1	0	0	0	0	0	0	0	1	1112	962	34	3		3	ATN1	12	7045900	Silent	SNP	G	TCGA-PA-A5YG-01A-11D-A29I-10		7045900	126805995	28	11901	135	2	1	56		3	2	25	N	G	3.721252e-05
ATN1	1822	ucsc.edu	37	chr12	7045906	7045906	+	Silent	SNP	G	G	A													0.0416666666666667	2	1	0.831469979296066	2.18260869565217	0.513554987212276	1	1	0	cagcaacagcagcagcagcaGcagcagcagcagcagcagca					novel		TCGA-PA-A5YG-01A-11D-A29I-10	TCGA-PA-A5YG-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	bc84db10-201a-4c8c-b43f-6a4557ecd98c	13f7f8b4-77e2-4100-b2fe-c35064ead1ea	.	ATN1-139	NM_001007026	exon5	c.G1476A	p.Q492Q	GCAGCAGCAGCAG	.	195	27	98	0	.	364	361	3	0	0	A	7045906	G	A	7045906	2	1	60	1	0	0	0	0	0	0	0	1	1112	962	34	3		3	ATN1	12	7045906	Silent	SNP	G	TCGA-PA-A5YG-01A-11D-A29I-10	6	7045906	126805989	29	11902	135	2	1	56		3	2	25	N	G	3.721252e-05
ATN1	1822	hgsc.bcm.edu	37	chr12	7045924	7045924	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0416666666666667	2	1	0.831469979296066	2.18260869565217	0.513554987212276	1	1	0	cagcagcagcagcagcagcaGcagcagcagcagcatcacgg	13	14	1	0	rs199988271	alternate_allele	TCGA-PA-A5YG-01A-11D-A29I-10	TCGA-PA-A5YG-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	bc84db10-201a-4c8c-b43f-6a4557ecd98c	13f7f8b4-77e2-4100-b2fe-c35064ead1ea	.	ATN1-139	NM_001007026	exon5	c.G1494T	p.Q498H	GCAGCAGCAGCAG	.	194	20	81	0	G|0.999;A|0.001	344	344	0	0	0	T	7045924	G	T	7045924	3	4	60	1	0	0	0	0	1	0	0	0	1112	962	34	3	1508	3	ATN1	12	7045924	Missense_Mutation	SNP	G	TCGA-PA-A5YG-01A-11D-A29I-10	18	7045924	126805971	30	11903			1	56		3	2	25	N	G	3.721252e-05
TAS2R46	259292	hgsc.bcm.edu	37	chr12	11214495	11214510	+	Frame_Shift_Del	DEL	TAGTATCACCAGAACA	TAGTATCACCAGAACA	-													0.0416666666666667	2	1	0.831469979296066	2.18260869565217	0.513554987212276	1	1	0	aaaaatagcaaaggccccaaTagtatcaccagaacaacact					novel		TCGA-PA-A5YG-01A-11D-A29I-10	TCGA-PA-A5YG-10A-01D-A29L-10	TAGTATCACCAGAACA	TAGTATCACCAGAACA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	bc84db10-201a-4c8c-b43f-6a4557ecd98c	13f7f8b4-77e2-4100-b2fe-c35064ead1ea	.	TAS2R46-1	NM_176887	exon1	c.384_399del	p.128_133del	CCCCAATAGTATC	.	231	0	125	0	.	0	0	0	0	0	-	11214510	TAGTATCACCAGAACA	-	11214495	7	5	60	1	0	1	0	1	0	0	0	0	15619	1393	49	0	534	0	TAS2R46	12	11214495	Frame_Shift_Del	DEL	TAGTATCACCAGAACA	TCGA-PA-A5YG-01A-11D-A29I-10	4168571	11214495	122637400	31	11904										
DIP2B	57609	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	51072495	51072495	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0416666666666667	2	1	0.831469979296066	2.18260869565217	0.513554987212276	1	1	0	ccccaaccagcccaagccggAgggacggcagatgacccctg	12	17	0	2	novel		TCGA-PA-A5YG-01A-11D-A29I-10	TCGA-PA-A5YG-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	bc84db10-201a-4c8c-b43f-6a4557ecd98c	13f7f8b4-77e2-4100-b2fe-c35064ead1ea	.	DIP2B-95	NM_173602	exon8	c.A950G	p.E317G	AGCCGGAGGGACG	.	240	25	136	0	.	12	10	2	0	0	G	51072495	A	G	51072495	3	3	60	1	0	0	0	0	1	0	0	0	4539	304	11	4	980	4	DIP2B	12	51072495	Missense_Mutation	SNP	A	TCGA-PA-A5YG-01A-11D-A29I-10	39858000	51072495	82779400	32	11905										
WSCD2	9671	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	108589790	108589790	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0416666666666667	2	1	0.831469979296066	2.18260869565217	0.513554987212276	1	1	0	ctgcaggaggcccagctgagGgtgctgagctgtccttcttg	15	11	1	2	novel		TCGA-PA-A5YG-01A-11D-A29I-10	TCGA-PA-A5YG-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	bc84db10-201a-4c8c-b43f-6a4557ecd98c	13f7f8b4-77e2-4100-b2fe-c35064ead1ea	.	WSCD2-136	NM_014653	exon2	c.G181T	p.G61C	GCTGAGGGTGCTG	.	339	74	173	1	.	1	1	0	0	0	T	108589790	G	T	108589790	3	4	60	1	0	0	0	0	1	0	0	0	17445	1232	43	3	183	3	WSCD2	12	108589790	Missense_Mutation	SNP	G	TCGA-PA-A5YG-01A-11D-A29I-10	57517295	108589790	25262105	33	11906										
TAOK3	51347	broad.mit.edu	37	chr12	118610311	118610311	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0416666666666667	2	1	0.831469979296066	2.18260869565217	0.513554987212276	1	1	0	gccgcttgatcattattttcCgcttgaagaaacgacaattt	7	9	1	3	novel		TCGA-PA-A5YG-01A-11D-A29I-10	TCGA-PA-A5YG-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	bc84db10-201a-4c8c-b43f-6a4557ecd98c	13f7f8b4-77e2-4100-b2fe-c35064ead1ea	.	TAOK3-933	NM_016281	exon17	c.G1850A	p.R617Q	ATTTTCCGCTTGA	.	494	10	264	0	.	56	54	2	0	0	T	118610311	C	T	118610311	3	4	60	1	0	0	0	0	1	0	0	0	15586	652	23	1	866	1	TAOK3	12	118610311	Missense_Mutation	SNP	C	TCGA-PA-A5YG-01A-11D-A29I-10	10020521	118610311	15241584	34	11907										
RNF17	56163	broad.mit.edu	37	chr13	25367256	25367256	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0416666666666667	2	1	0.831469979296066	2.18260869565217	0.513554987212276	1	1	0	aaaaggaactttcttgttacGatacatacccaccgctagaa	6	10	1	1	novel		TCGA-PA-A5YG-01A-11D-A29I-10	TCGA-PA-A5YG-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	bc84db10-201a-4c8c-b43f-6a4557ecd98c	13f7f8b4-77e2-4100-b2fe-c35064ead1ea	.	RNF17-228	NM_001184993	exon10	c.G1012T	p.D338Y	TGTTACGATACAT	.	126	3	103	0	.	0	0	0	0	0	T	25367256	G	T	25367256	3	4	60	1	0	0	0	0	1	0	0	0	13496	1058	37	2	1050	2	RNF17	13	25367256	Missense_Mutation	SNP	G	TCGA-PA-A5YG-01A-11D-A29I-10		25367256	89802622	35	11908										
FRY	10129	bcgsc.ca	37	chr13	32811974	32811974	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0416666666666667	2	1	0.831469979296066	2.18260869565217	0.513554987212276	1	1	0	aaagcttgagaaactccaggCacagctgaagtgggccgact	12	10	0	2	rs73169136	byfrequency	TCGA-PA-A5YG-01A-11D-A29I-10	TCGA-PA-A5YG-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	bc84db10-201a-4c8c-b43f-6a4557ecd98c	13f7f8b4-77e2-4100-b2fe-c35064ead1ea	.	FRY-142	NM_023037	exon44	c.C6269T	p.A2090V	TCCAGGCACAGCT	.	211	7	149	0	C|0.990;T|0.010	10	10	0	0	0	T	32811974	C	T	32811974	3	4	60	1	0	0	0	0	1	0	0	0	6082	710	25	3	6443	3	FRY	13	32811974	Missense_Mutation	SNP	C	TCGA-PA-A5YG-01A-11D-A29I-10	7444718	32811974	82357904	36	11909										
RNASE4	6038	bcgsc.ca	37	chr14	21167576	21167576	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0416666666666667	2	1	0.831469979296066	2.18260869565217	0.513554987212276	1	1	0	tgcttctgcttttgctgctgAccctgctggggctggggctg	15	11	1	1	rs3748338	byfrequency	TCGA-PA-A5YG-01A-11D-A29I-10	TCGA-PA-A5YG-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	bc84db10-201a-4c8c-b43f-6a4557ecd98c	13f7f8b4-77e2-4100-b2fe-c35064ead1ea	.	RNASE4-514	NM_002937	exon2	c.A46T	p.T16S	CTGCTGACCCTGC	.	57	4	59	0	A|0.887;N|0.000	2	2	0	0	0	T	21167576	A	T	21167576	3	4	60	1	0	0	0	0	1	0	0	0	13441	275	10	5	48	5	RNASE4	14	21167576	Missense_Mutation	SNP	A	TCGA-PA-A5YG-01A-11D-A29I-10		21167576	86181964	37	11910										
KREMEN2	79412	hgsc.bcm.edu	37	chr16	3017992	3017992	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0416666666666667	2	1	0.831469979296066	2.18260869565217	0.513554987212276	1	1	0	tgagtgcctccagccagagcTccctgcgctcgctcatctcc	9	18	2	2	novel		TCGA-PA-A5YG-01A-11D-A29I-10	TCGA-PA-A5YG-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	bc84db10-201a-4c8c-b43f-6a4557ecd98c	13f7f8b4-77e2-4100-b2fe-c35064ead1ea	.	KREMEN2-659	NM_172229	exon9	c.T1360C	p.S454P	CAGAGCTCCCTGC	.	9	5	0	0	.	4	1	3	0	0	C	3017992	T	C	3017992	3	2	60	1	0	0	0	0	1	0	0	0	8464	1551	54	4	1394	4	KREMEN2	16	3017992	Missense_Mutation	SNP	T	TCGA-PA-A5YG-01A-11D-A29I-10		3017992	87336761	38	11911										
SEZ6L2	26470	hgsc.bcm.edu;ucsc.edu	37	chr16	29884982	29884982	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0416666666666667	2	1	0.831469979296066	2.18260869565217	0.513554987212276	1	1	0	gtactggacgtgggagccaaCggggaagccggcgtccgagg	19	10	0	0	rs146085461		TCGA-PA-A5YG-01A-11D-A29I-10	TCGA-PA-A5YG-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	bc84db10-201a-4c8c-b43f-6a4557ecd98c	13f7f8b4-77e2-4100-b2fe-c35064ead1ea	.	SEZ6L2-92	NM_001243332	exon13	c.G2173A	p.V725I	AGCCAACGGGGAA	.	117	53	18	0	C|1.000;T|0.000	38	9	29	0	0	T	29884982	C	T	29884982	3	4	60	1	0	0	0	0	1	0	0	0	14179	536	19	1	622	1	SEZ6L2	16	29884982	Missense_Mutation	SNP	C	TCGA-PA-A5YG-01A-11D-A29I-10	26866990	29884982	60469771	39	11912										
DHODH	1723	bcgsc.ca	37	chr16	72042682	72042682	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0416666666666667	2	1	0.831469979296066	2.18260869565217	0.513554987212276	1	1	0	gcatggcgtggagacacctgAaagtgagtcccgcgagtgag	16	9	0	4	rs3213422	byfrequency	TCGA-PA-A5YG-01A-11D-A29I-10	TCGA-PA-A5YG-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	bc84db10-201a-4c8c-b43f-6a4557ecd98c	13f7f8b4-77e2-4100-b2fe-c35064ead1ea	.	DHODH-227	NM_001361	exon1	c.A19C	p.K7Q	CACCTGAAAGTGA	.	493	11	187	0	A|0.433;C|0.567	0	0	0	0	0	C	72042682	A	C	72042682	3	2	60	1	0	0	0	0	1	0	0	0	4495	247	9	5	21	5	DHODH	16	72042682	Missense_Mutation	SNP	A	TCGA-PA-A5YG-01A-11D-A29I-10	42157700	72042682	18312071	40	11913										
TBC1D26	353149	broad.mit.edu	37	chr17	15641610	15641610	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0416666666666667	2	1	0.831469979296066	2.18260869565217	0.513554987212276	1	1	0	gtagctgtctcaaagagtatAcaaagtcattcccctggcgg	10	10	2	1	rs202131240		TCGA-PA-A5YG-01A-11D-A29I-10	TCGA-PA-A5YG-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	bc84db10-201a-4c8c-b43f-6a4557ecd98c	13f7f8b4-77e2-4100-b2fe-c35064ead1ea	.	TBC1D26-90	NM_178571	exon7	c.A296G	p.Y99C	GAGTATACAAAGT	.	208	4	191	0	.	0	0	0	0	0	G	15641610	A	G	15641610	3	3	60	1	0	0	0	0	1	0	0	0	15653	391	14	4	314	4	TBC1D26	17	15641610	Missense_Mutation	SNP	A	TCGA-PA-A5YG-01A-11D-A29I-10		15641610	65553600	41	11914										
KRT12	3859	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	39021191	39021191	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0416666666666667	2	1	0.831469979296066	2.18260869565217	0.513554987212276	1	1	0	tgtcggcctctacgccctggCgcagggccagttcattctca	11	15	3	0	novel		TCGA-PA-A5YG-01A-11D-A29I-10	TCGA-PA-A5YG-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	bc84db10-201a-4c8c-b43f-6a4557ecd98c	13f7f8b4-77e2-4100-b2fe-c35064ead1ea	.	KRT12-91	NM_000223	exon3	c.G674A	p.R225H	CCCTGGCGCAGGG	.	131	56	94	0	.	0	0	0	0	0	T	39021191	C	T	39021191	3	4	60	1	0	0	0	0	1	0	0	0	8470	768	27	1	834	1	KRT12	17	39021191	Missense_Mutation	SNP	C	TCGA-PA-A5YG-01A-11D-A29I-10	23379581	39021191	42174019	42	11915										
KLHL10	317719	broad.mit.edu;bcgsc.ca	37	chr17	40004254	40004254	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0416666666666667	2	1	0.831469979296066	2.18260869565217	0.513554987212276	1	1	0	gccctgtggctaacacttggCgcacaatccccactatgttt	8	14	0	0	novel		TCGA-PA-A5YG-01A-11D-A29I-10	TCGA-PA-A5YG-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	bc84db10-201a-4c8c-b43f-6a4557ecd98c	13f7f8b4-77e2-4100-b2fe-c35064ead1ea	.	KLHL10-227	NM_152467	exon5	c.C1522T	p.R508C	ACTTGGCGCACAA	.	393	9	323	1	.	0	0	0	0	0	T	40004254	C	T	40004254	3	4	60	1	0	0	0	0	1	0	0	0	8387	768	27	1	1540	1	KLHL10	17	40004254	Missense_Mutation	SNP	C	TCGA-PA-A5YG-01A-11D-A29I-10	983063	40004254	41190956	43	11916										
ENOSF1	55556	broad.mit.edu	37	chr18	683362	683362	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0416666666666667	2	1	0.831469979296066	2.18260869565217	0.513554987212276	1	1	0	cgcctcaggcacatcccagcGctggttggcatccatcatct	9	16	3	0	rs142662421	byfrequency	TCGA-PA-A5YG-01A-11D-A29I-10	TCGA-PA-A5YG-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	bc84db10-201a-4c8c-b43f-6a4557ecd98c	13f7f8b4-77e2-4100-b2fe-c35064ead1ea	.	ENOSF1-91	NM_202758	exon11	c.C823T	p.R275C	CCCAGCGCTGGTT	.	252	5	231	0	G|0.999;A|0.001	37	37	0	0	0	A	683362	G	A	683362	3	1	60	1	0	0	0	0	1	0	0	0	5138	1087	38	1	595	1	ENOSF1	18	683362	Missense_Mutation	SNP	G	TCGA-PA-A5YG-01A-11D-A29I-10		683362	77393886	44	11917										
SMTN	6525	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr22	31495743	31495743	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0416666666666667	2	1	0.831469979296066	2.18260869565217	0.513554987212276	1	1	0	gcttatagcacgtcgacatcCagaacttctcctccagctgg	8	14	1	1	novel		TCGA-PA-A5YG-01A-11D-A29I-10	TCGA-PA-A5YG-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	bc84db10-201a-4c8c-b43f-6a4557ecd98c	13f7f8b4-77e2-4100-b2fe-c35064ead1ea	.	SMTN-154	NM_001207017	exon20	c.C2719T	p.Q907X	GACATCCAGAACT	.	150	8	118	0	.	1	1	0	0	0	T	31495743	C	T	31495743	4	4	60	1	0	0	0	0	0	1	0	0	14849	595	21	3	2534	3	SMTN	22	31495743	Nonsense_Mutation	SNP	C	TCGA-PA-A5YG-01A-11D-A29I-10		31495743	19808823	45	11918										
TMPRSS6	164656	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr22	37462261	37462261	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0416666666666667	2	1	0.831469979296066	2.18260869565217	0.513554987212276	1	1	0	ctgagtgccttgcacaccagCggaccacctgagtcaccctg	10	16	1	2	novel		TCGA-PA-A5YG-01A-11D-A29I-10	TCGA-PA-A5YG-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	bc84db10-201a-4c8c-b43f-6a4557ecd98c	13f7f8b4-77e2-4100-b2fe-c35064ead1ea	.	TMPRSS6-292	NM_153609	exon18	c.G2295A	p.P765P	CACCAGCGGACCA	.	185	47	88	0	.	0	0	0	0	0	T	37462261	C	T	37462261	2	4	60	1	0	0	0	0	0	0	0	1	16288	755	27	1		1	TMPRSS6	22	37462261	Silent	SNP	C	TCGA-PA-A5YG-01A-11D-A29I-10	5966518	37462261	13842305	46	11919										
TNMD	64102	broad.mit.edu	37	chrX	99854070	99854070	+	Frame_Shift_Del	DEL	A	A	-													0.0416666666666667	2	1	0.831469979296066	2.18260869565217	0.513554987212276	1	1	0	tcttcactttcctgccaacgAaaaaaaagggattgaacaaa					novel		TCGA-PA-A5YG-01A-11D-A29I-10	TCGA-PA-A5YG-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	bc84db10-201a-4c8c-b43f-6a4557ecd98c	13f7f8b4-77e2-4100-b2fe-c35064ead1ea	.	TNMD-130	NM_022144	exon6	c.635delA	p.E212fs	CCAACGAAAAAAA	.	458	7	226	0	.	0	0	0	0	0	-	99854070	A	-	99854070	7	5	60	1	0	1	0	1	0	0	0	0	16359	246	9	0	657	0	TNMD	23	99854070	Frame_Shift_Del	DEL	A	TCGA-PA-A5YG-01A-11D-A29I-10		99854070	55416490	47	11920										
CAPN6	827	bcgsc.ca	37	chrX	110494841	110494841	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0416666666666667	2	1	0.831469979296066	2.18260869565217	0.513554987212276	1	1	0	tctcaggcgaaccatatacaCcttctcagcactgaagactt	6	13	2	2	rs12013711	byfrequency	TCGA-PA-A5YG-01A-11D-A29I-10	TCGA-PA-A5YG-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	bc84db10-201a-4c8c-b43f-6a4557ecd98c	13f7f8b4-77e2-4100-b2fe-c35064ead1ea	.	CAPN6-195	NM_014289	exon6	c.G829C	p.V277L	TATACACCTTCTC	.	288	8	154	0	C|0.723;0|0.021	0	0	0	0	0	G	110494841	C	G	110494841	3	3	60	1	0	0	0	0	1	0	0	0	2636	507	18	3	1128	3	CAPN6	23	110494841	Missense_Mutation	SNP	C	TCGA-PA-A5YG-01A-11D-A29I-10	10640771	110494841	44775719	48	11921										
PGRMC1	10857	broad.mit.edu	37	chrX	118370384	118370384	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0416666666666667	2	1	0.831469979296066	2.18260869565217	0.513554987212276	1	1	0	caagcgatctggagagcggcGggctgctgcatgagattttc	15	9	1	2	novel		TCGA-PA-A5YG-01A-11D-A29I-10	TCGA-PA-A5YG-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	bc84db10-201a-4c8c-b43f-6a4557ecd98c	13f7f8b4-77e2-4100-b2fe-c35064ead1ea	.	PGRMC1-130	NM_006667	exon1	c.G58T	p.G20W	AGCGGCGGGCTGC	.	139	5	29	0	.	43	43	0	0	0	T	118370384	G	T	118370384	3	4	60	1	0	0	0	0	1	0	0	0	11835	1116	39	2	60	2	PGRMC1	23	118370384	Missense_Mutation	SNP	G	TCGA-PA-A5YG-01A-11D-A29I-10	7875543	118370384	36900176	49	11922										
ZC3H12A	80149	broad.mit.edu	37	chr1	37941415	37941415	+	Silent	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.0434782608695652	3	1	0.771666666666667	1.54333333333333	0.385833333333333	1	1	0	ccggacccctgccctcagctCcctctagtcccgcggggtgg	12	19	2	0	novel		TCGA-PK-A5H8-01A-11D-A29I-10	TCGA-PK-A5H8-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	59162a9b-9c64-4525-80ea-143fd766b6b2	cf83fa12-254e-4252-8a99-ac629bc5118b	.	ZC3H12A-92	NM_025079	exon2	c.C318G	p.L106L	TCAGCTCCCTCTA	.	72	3	130	0	.	3	3	0	0	0	G	37941415	C	G	37941415	2	3	61	1	0	0	0	0	0	0	0	1	17598	842	30	3		3	ZC3H12A	1	37941415	Silent	SNP	C	TCGA-PK-A5H8-01A-11D-A29I-10		37941415	211309206	1	11923										
STIL	6491	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	47746485	47746485	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0434782608695652	3	1	0.771666666666667	1.54333333333333	0.385833333333333	1	1	0	gggtcttataggatactcttCgttttgtacatttccagcag	9	8	2	0	novel		TCGA-PK-A5H8-01A-11D-A29I-10	TCGA-PK-A5H8-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	59162a9b-9c64-4525-80ea-143fd766b6b2	cf83fa12-254e-4252-8a99-ac629bc5118b	.	STIL-659	NM_003035	exon12	c.G1645A	p.E549K	ACTCTTCGTTTTG	.	44	14	103	0	.	1	1	0	0	0	T	47746485	C	T	47746485	3	4	61	1	0	0	0	0	1	0	0	0	15319	893	31	1	2245	1	STIL	1	47746485	Missense_Mutation	SNP	C	TCGA-PK-A5H8-01A-11D-A29I-10	9805070	47746485	201504136	2	11924										
ODF2L	57489	ucsc.edu	37	chr1	86836714	86836714	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	3	1	0.771666666666667	1.54333333333333	0.385833333333333	1	1	0	atagtacctttaattttgtaTtctcaagattcagagtttca	5	6	3	2	novel		TCGA-PK-A5H8-01A-11D-A29I-10	TCGA-PK-A5H8-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	59162a9b-9c64-4525-80ea-143fd766b6b2	cf83fa12-254e-4252-8a99-ac629bc5118b	.	ODF2L-69	NM_001007022	exon10	c.A1043G	p.N348S	TTTGTATTCTCAA	.	38	4	64	0	.	0	0	0	0	0	C	86836714	T	C	86836714	3	2	61	1	0	0	0	0	1	0	0	0	10857	1493	52	4	1079	4	ODF2L	1	86836714	Missense_Mutation	SNP	T	TCGA-PK-A5H8-01A-11D-A29I-10	39090229	86836714	162413907	3	11925										
PLEKHO1	51177	ucsc.edu	37	chr1	150131221	150131221	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0434782608695652	3	1	0.771666666666667	1.54333333333333	0.385833333333333	1	1	0	gcagtctctcccgaccttggGaaaaaacagacaaaggggcc	11	12	1	1	novel		TCGA-PK-A5H8-01A-11D-A29I-10	TCGA-PK-A5H8-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	59162a9b-9c64-4525-80ea-143fd766b6b2	cf83fa12-254e-4252-8a99-ac629bc5118b	.	PLEKHO1-226	NM_016274	exon6	c.G733A	p.E245K	CCTTGGGAAAAAA	.	104	2	202	0	.	24	18	6	0	0	A	150131221	G	A	150131221	3	1	61	1	0	0	0	0	1	0	0	0	12113	1175	41	3	755	3	PLEKHO1	1	150131221	Missense_Mutation	SNP	G	TCGA-PK-A5H8-01A-11D-A29I-10	63294507	150131221	99119400	4	11926										
LMNA	4000	bcgsc.ca	37	chr1	156105772	156105772	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	3	1	0.771666666666667	1.54333333333333	0.385833333333333	1	1	0	accagccggcggctgctggcGgaaaaggagcgggagatggc	19	10	0	1	rs17847242		TCGA-PK-A5H8-01A-11D-A29I-10	TCGA-PK-A5H8-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	59162a9b-9c64-4525-80ea-143fd766b6b2	cf83fa12-254e-4252-8a99-ac629bc5118b	.	LMNA-228	NM_005572	exon6	c.G1017A	p.A339A	GCTGGCGGAAAAG	.	88	4	177	1	G|0.999;A|0.001	195	195	0	0	0	A	156105772	G	A	156105772	2	1	61	1	0	0	0	0	0	0	0	1	8872	1103	39	1		1	LMNA	1	156105772	Silent	SNP	G	TCGA-PK-A5H8-01A-11D-A29I-10	5974551	156105772	93144849	5	11927										
LGR6	59352	bcgsc.ca	37	chr1	202287754	202287754	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	3	1	0.771666666666667	1.54333333333333	0.385833333333333	1	1	0	actgcgccatggtgaggcacGtggcctggctcatcttcgca	13	13	2	1	rs75658797	byfrequency	TCGA-PK-A5H8-01A-11D-A29I-10	TCGA-PK-A5H8-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	59162a9b-9c64-4525-80ea-143fd766b6b2	cf83fa12-254e-4252-8a99-ac629bc5118b	.	LGR6-160	NM_001017403	exon18	c.G2323A	p.V775M	AGGCACGTGGCCT	.	95	5	145	0	G|0.899;A|0.101	0	0	0	0	0	A	202287754	G	A	202287754	3	1	61	1	0	0	0	0	1	0	0	0	8781	1145	40	1	2540	1	LGR6	1	202287754	Missense_Mutation	SNP	G	TCGA-PK-A5H8-01A-11D-A29I-10	46181982	202287754	46962867	6	11928										
PDE1A	5136	broad.mit.edu	37	chr2	183291349	183291349	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	3	1	0.771666666666667	1.54333333333333	0.385833333333333	1	1	0	ttcttcctgattgtgacatgGtcatccatttaaaggtgaag	9	7	2	3	novel		TCGA-PK-A5H8-01A-11D-A29I-10	TCGA-PK-A5H8-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	59162a9b-9c64-4525-80ea-143fd766b6b2	cf83fa12-254e-4252-8a99-ac629bc5118b	.	PDE1A-93	NM_001258313	exon1	c.C9A	p.D3E	GACATGGTCATCC	.	103	3	164	0	.	0	0	0	0	0	T	183291349	G	T	183291349	3	4	61	1	0	0	0	0	1	0	0	0	11662	1276	44	3		3	PDE1A	2	183291349	Missense_Mutation	SNP	G	TCGA-PK-A5H8-01A-11D-A29I-10		183291349	59908024	7	11929										
ITGAV	3685	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	187521095	187521095	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0434782608695652	3	1	0.771666666666667	1.54333333333333	0.385833333333333	1	1	0	actatttcaagggggggactGatgcagtgtgaggaattgat	15	4	1	3	novel		TCGA-PK-A5H8-01A-11D-A29I-10	TCGA-PK-A5H8-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	59162a9b-9c64-4525-80ea-143fd766b6b2	cf83fa12-254e-4252-8a99-ac629bc5118b	.	ITGAV-653	NM_002210	exon17	c.G1686A	p.L562L	GGGACTGATGCAG	.	80	32	167	1	.	1	0	1	0	0	A	187521095	G	A	187521095	2	1	61	1	0	0	0	0	0	0	0	1	7909	1277	45	3		3	ITGAV	2	187521095	Silent	SNP	G	TCGA-PK-A5H8-01A-11D-A29I-10	4229746	187521095	55678278	8	11930										
CRYGB	1419	bcgsc.ca	37	chr2	209007559	209007559	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	3	1	0.771666666666667	1.54333333333333	0.385833333333333	1	1	0	gaagcggtcctgaacagagaTacagtcgtctgtgagctctg	13	9	2	3	rs796287	byfrequency	TCGA-PK-A5H8-01A-11D-A29I-10	TCGA-PK-A5H8-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	59162a9b-9c64-4525-80ea-143fd766b6b2	cf83fa12-254e-4252-8a99-ac629bc5118b	.	CRYGB-90	NM_005210	exon3	c.A331C	p.I111L	CAGAGATACAGTC	.	204	8	306	2	G|0.655;N|0.000	0	0	0	0	0	G	209007559	T	G	209007559	3	3	61	1	0	0	0	0	1	0	0	0	3921	1406	49	5	200	5	CRYGB	2	209007559	Missense_Mutation	SNP	T	TCGA-PK-A5H8-01A-11D-A29I-10	21486464	209007559	34191814	9	11931										
IGFBP5	3488	bcgsc.ca	37	chr2	217559484	217559484	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	3	1	0.771666666666667	1.54333333333333	0.385833333333333	1	1	0	gccagcagcaggaggaccgcGgtgagcaacaccatcttctc	12	14	2	1	novel		TCGA-PK-A5H8-01A-11D-A29I-10	TCGA-PK-A5H8-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	59162a9b-9c64-4525-80ea-143fd766b6b2	cf83fa12-254e-4252-8a99-ac629bc5118b	.	IGFBP5-522	NM_000599	exon1	c.C15A	p.T5T	GACCGCGGTGAGC	.	20	3	41	0	.	3	3	0	0	0	T	217559484	G	T	217559484	2	4	61	1	0	0	0	0	0	0	0	1	7603	1103	39	2		2	IGFBP5	2	217559484	Silent	SNP	G	TCGA-PK-A5H8-01A-11D-A29I-10	8551925	217559484	25639889	10	11932										
FARP2	9855	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	242396172	242396172	+	Silent	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.0434782608695652	3	1	0.771666666666667	1.54333333333333	0.385833333333333	1	1	0	tcatttccaggcctttccacGaagagtcctcagccttctcc	6	16	3	1	novel		TCGA-PK-A5H8-01A-11D-A29I-10	TCGA-PK-A5H8-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	59162a9b-9c64-4525-80ea-143fd766b6b2	cf83fa12-254e-4252-8a99-ac629bc5118b	.	FARP2-93	NM_014808	exon14	c.G1422C	p.T474T	TTCCACGAAGAGT	.	197	181	238	1	.	0	0	0	0	0	C	242396172	G	C	242396172	2	2	61	1	0	0	0	0	0	0	0	1	5696	1045	37	2		2	FARP2	2	242396172	Silent	SNP	G	TCGA-PK-A5H8-01A-11D-A29I-10	24836688	242396172	803201	11	11933										
XIRP1	165904	bcgsc.ca	37	chr3	39230610	39230610	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	3	1	0.771666666666667	1.54333333333333	0.385833333333333	1	1	0	tccttggcagctggcctctcGtgttctccaatggcatccag	10	14	2	0	rs80147433	byfrequency	TCGA-PK-A5H8-01A-11D-A29I-10	TCGA-PK-A5H8-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	59162a9b-9c64-4525-80ea-143fd766b6b2	cf83fa12-254e-4252-8a99-ac629bc5118b	.	XIRP1-158	NM_001198621	exon2	c.C327T	p.H109H	CCTCTCGTGTTCT	.	157	6	221	0	G|0.986;A|0.014	0	0	0	0	0	A	39230610	G	A	39230610	2	1	61	1	0	0	0	0	0	0	0	1	17467	1136	40	1		1	XIRP1	3	39230610	Silent	SNP	G	TCGA-PK-A5H8-01A-11D-A29I-10		39230610	158791820	12	11934										
TMEM115	11070	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr3	50392898	50392900	+	In_Frame_Del	DEL	TCA	TCA	-													0.0434782608695652	3	1	0.771666666666667	1.54333333333333	0.385833333333333	1	1	0	ccttggccccagactcctctTcatcatcatccatgctgggc					novel		TCGA-PK-A5H8-01A-11D-A29I-10	TCGA-PK-A5H8-10A-01D-A29L-10	TCA	TCA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	59162a9b-9c64-4525-80ea-143fd766b6b2	cf83fa12-254e-4252-8a99-ac629bc5118b	.	TMEM115-278	NM_007024	exon2	c.930_932del	p.310_311del	TCCTCTTCATCAT	.	100	28	171	0	.	0	0	0	0	0	-	50392900	TCA	-	50392898	7	5	61	1	0	1	0	1	0	0	0	0	16066	1783	62	0	127	0	TMEM115	3	50392898	In_Frame_Del	DEL	TCA	TCGA-PK-A5H8-01A-11D-A29I-10	11162288	50392898	147629532	13	11935										
ACAD9	28976	bcgsc.ca	37	chr3	128614185	128614185	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	3	1	0.771666666666667	1.54333333333333	0.385833333333333	1	1	0	tctccaacaccatgtactcaAgactaggggagatcatcagc	8	12	4	2	rs1680778	byfrequency	TCGA-PK-A5H8-01A-11D-A29I-10	TCGA-PK-A5H8-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	59162a9b-9c64-4525-80ea-143fd766b6b2	cf83fa12-254e-4252-8a99-ac629bc5118b	.	ACAD9-92	NM_014049	exon4	c.A379C	p.R127R	TACTCAAGACTAG	.	123	6	211	0	A|0.502;C|0.498	13	13	0	0	0	C	128614185	A	C	128614185	2	2	61	1	0	0	0	0	0	0	0	1	111	64	3	5		5	ACAD9	3	128614185	Silent	SNP	A	TCGA-PK-A5H8-01A-11D-A29I-10	78221287	128614185	69408245	14	11936										
FGFBP2	83888	bcgsc.ca	37	chr4	15964670	15964670	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	3	1	0.771666666666667	1.54333333333333	0.385833333333333	1	1	0	aatggaattcctccccagtgCttccttgcttttgcctcggg	9	13	0	0	rs35496730	byfrequency	TCGA-PK-A5H8-01A-11D-A29I-10	TCGA-PK-A5H8-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	59162a9b-9c64-4525-80ea-143fd766b6b2	cf83fa12-254e-4252-8a99-ac629bc5118b	.	FGFBP2-22	NM_031950	exon1	c.G83A	p.S28N	CCAGTGCTTCCTT	.	89	6	160	0	C|0.872;T|0.128	0	0	0	0	0	T	15964670	C	T	15964670	3	4	61	1	0	0	0	0	1	0	0	0	5880	797	28	3	592	3	FGFBP2	4	15964670	Missense_Mutation	SNP	C	TCGA-PK-A5H8-01A-11D-A29I-10		15964670	175189606	15	11937										
PTPN13	5783	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	87643581	87643581	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	3	1	0.771666666666667	1.54333333333333	0.385833333333333	1	1	0	acagccatgactcaaagaaaActgagggtaagttgattctc	9	8	2	4	novel		TCGA-PK-A5H8-01A-11D-A29I-10	TCGA-PK-A5H8-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	59162a9b-9c64-4525-80ea-143fd766b6b2	cf83fa12-254e-4252-8a99-ac629bc5118b	.	PTPN13-230	NM_006264	exon10	c.A1602C	p.K534N	AAGAAAACTGAGG	.	341	147	287	0	.	0	0	0	0	0	C	87643581	A	C	87643581	3	2	61	1	0	0	0	0	1	0	0	0	12815	40	2	5	1636	5	PTPN13	4	87643581	Missense_Mutation	SNP	A	TCGA-PK-A5H8-01A-11D-A29I-10	71678911	87643581	103510695	16	11938										
COL25A1	84570	hgsc.bcm.edu;broad.mit.edu	37	chr4	109861707	109861707	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	3	1	0.771666666666667	1.54333333333333	0.385833333333333	1	1	0	cgactcacgggtactcctggCattccacgggggccatcttt	11	14	2	0	novel		TCGA-PK-A5H8-01A-11D-A29I-10	TCGA-PK-A5H8-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	59162a9b-9c64-4525-80ea-143fd766b6b2	cf83fa12-254e-4252-8a99-ac629bc5118b	.	COL25A1-92	NM_198721	exon9	c.G660T	p.M220I	TCCTGGCATTCCA	.	58	4	78	0	.	0	0	0	0	0	A	109861707	C	A	109861707	3	1	61	1	0	0	0	0	1	0	0	0	3690	710	25	3	1504	3	COL25A1	4	109861707	Missense_Mutation	SNP	C	TCGA-PK-A5H8-01A-11D-A29I-10	22218126	109861707	81292569	17	11939										
SRD5A1	6715	hgsc.bcm.edu	37	chr5	6633779	6633779	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	3	1	0.771666666666667	1.54333333333333	0.385833333333333	1	1	0	ggctgcgcggtcttcgcgcgCaatcgtcagacgaactcagt	13	13	3	1	rs248793	byfrequency	TCGA-PK-A5H8-01A-11D-A29I-10	TCGA-PK-A5H8-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	59162a9b-9c64-4525-80ea-143fd766b6b2	cf83fa12-254e-4252-8a99-ac629bc5118b	.	SRD5A1-90	NM_001047	exon1	c.C90G	p.R30R	CGCGCGCAATCGT	.	6	5	3	0	C|0.454;G|0.546	0	0	0	0	0	G	6633779	C	G	6633779	2	3	61	1	0	0	0	0	0	0	0	1	15175	697	25	3		3	SRD5A1	5	6633779	Silent	SNP	C	TCGA-PK-A5H8-01A-11D-A29I-10		6633779	174281481	18	11940										
ARL10	285598	hgsc.bcm.edu	37	chr5	175792605	175792605	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	3	1	0.771666666666667	1.54333333333333	0.385833333333333	1	1	0	ggccccttggtgctggcgctGggcggcgccgcggcggtgct	20	14	0	0	rs2303667		TCGA-PK-A5H8-01A-11D-A29I-10	TCGA-PK-A5H8-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	59162a9b-9c64-4525-80ea-143fd766b6b2	cf83fa12-254e-4252-8a99-ac629bc5118b	.	ARL10-91	NM_173664	exon1	c.G39C	p.L13L	GGCGCTGGGCGGC	.	4	4	1	0	G|0.585;C|0.415	0	0	0	0	0	C	175792605	G	C	175792605	2	2	61	1	0	0	0	0	0	0	0	1	926	1335	47	3		3	ARL10	5	175792605	Silent	SNP	G	TCGA-PK-A5H8-01A-11D-A29I-10	169158826	175792605	5122655	19	11941										
CNOT6	57472	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	179994980	179994980	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	3	1	0.771666666666667	1.54333333333333	0.385833333333333	1	1	0	tgcagtactgctagaacttcGgaaggaatcgattgaaatgc	11	7	0	2	rs143354534	alternate_allele	TCGA-PK-A5H8-01A-11D-A29I-10	TCGA-PK-A5H8-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	59162a9b-9c64-4525-80ea-143fd766b6b2	cf83fa12-254e-4252-8a99-ac629bc5118b	.	CNOT6-90	NM_015455	exon9	c.G1004A	p.R335Q	AACTTCGGAAGGA	.	120	18	105	0	G|1.000;T|0.000	5	5	0	0	0	A	179994980	G	A	179994980	3	1	61	1	0	0	0	0	1	0	0	0	3628	1116	39	1	1034	1	CNOT6	5	179994980	Missense_Mutation	SNP	G	TCGA-PK-A5H8-01A-11D-A29I-10	4202375	179994980	920280	20	11942										
C6orf222	389384	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	36298263	36298263	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0434782608695652	3	1	0.771666666666667	1.54333333333333	0.385833333333333	1	1	0	ggctgcagcggtggtgcagtGagcctctgcagatggagctg	18	9	1	2	novel		TCGA-PK-A5H8-01A-11D-A29I-10	TCGA-PK-A5H8-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	59162a9b-9c64-4525-80ea-143fd766b6b2	cf83fa12-254e-4252-8a99-ac629bc5118b	.	C6orf222-93	NM_001010903	exon2	c.C205A	p.H69N	TGCAGTGAGCCTC	.	68	18	70	0	.	0	0	0	0	0	T	36298263	G	T	36298263	3	4	61	1	0	0	0	0	1	0	0	0	2362	1290	45	3	1797	3	C6orf222	6	36298263	Missense_Mutation	SNP	G	TCGA-PK-A5H8-01A-11D-A29I-10		36298263	134816804	21	11943										
COL21A1	81578	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	55990909	55990909	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	3	1	0.771666666666667	1.54333333333333	0.385833333333333	1	1	0	tcaacctttgatcctggcatGccatgaagcccaggaaaacc	8	13	1	2	novel		TCGA-PK-A5H8-01A-11D-A29I-10	TCGA-PK-A5H8-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	59162a9b-9c64-4525-80ea-143fd766b6b2	cf83fa12-254e-4252-8a99-ac629bc5118b	.	COL21A1-24	NM_030820	exon13	c.C1581A	p.G527G	TGGCATGCCATGA	.	135	28	185	0	.	0	0	0	0	0	T	55990909	G	T	55990909	2	4	61	1	0	0	0	0	0	0	0	1	3686	1306	46	3		3	COL21A1	6	55990909	Silent	SNP	G	TCGA-PK-A5H8-01A-11D-A29I-10	19692646	55990909	115124158	22	11944										
CD109	135228	bcgsc.ca	37	chr6	74468692	74468692	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	3	1	0.771666666666667	1.54333333333333	0.385833333333333	1	1	0	ccaaaatttgaagtgactttGcagacaccattatattgttc	6	8	0	3	novel		TCGA-PK-A5H8-01A-11D-A29I-10	TCGA-PK-A5H8-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	59162a9b-9c64-4525-80ea-143fd766b6b2	cf83fa12-254e-4252-8a99-ac629bc5118b	.	CD109-155	NM_133493	exon7	c.G699T	p.L233F	GACTTTGCAGACA	.	65	4	82	0	.	0	0	0	0	0	T	74468692	G	T	74468692	3	4	61	1	0	0	0	0	1	0	0	0	2969	1310	46	3	725	3	CD109	6	74468692	Missense_Mutation	SNP	G	TCGA-PK-A5H8-01A-11D-A29I-10	18477783	74468692	96646375	23	11945										
TIAM2	26230	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr6	155469331	155469337	+	Frame_Shift_Del	DEL	GACACGC	GACACGC	-													0.0434782608695652	3	1	0.771666666666667	1.54333333333333	0.385833333333333	1	1	0	caaagaagcatgggaaagagGacacgctgcggctgctgaag					novel		TCGA-PK-A5H8-01A-11D-A29I-10	TCGA-PK-A5H8-10A-01D-A29L-10	GACACGC	GACACGC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	59162a9b-9c64-4525-80ea-143fd766b6b2	cf83fa12-254e-4252-8a99-ac629bc5118b	.	TIAM2-93	NM_012454	exon6	c.1891_1897del	p.631_633del	AAAGAGGACACGC	.	287	0	385	0	.	0	0	0	0	0	-	155469337	GACACGC	-	155469331	7	5	61	1	0	1	0	1	0	0	0	0	15928	1174	41	0	1905	0	TIAM2	6	155469331	Frame_Shift_Del	DEL	GACACGC	TCGA-PK-A5H8-01A-11D-A29I-10	81000639	155469331	15645736	24	11946										
ANKIB1	54467	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	92027761	92027761	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	3	1	0.771666666666667	1.54333333333333	0.385833333333333	1	1	0	ggaacttggtgacagcctcaTgagactaggagcagagaatg	14	7	1	3	novel		TCGA-PK-A5H8-01A-11D-A29I-10	TCGA-PK-A5H8-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	59162a9b-9c64-4525-80ea-143fd766b6b2	cf83fa12-254e-4252-8a99-ac629bc5118b	.	ANKIB1-432	NM_019004	exon20	c.T2768G	p.M923R	GCCTCATGAGACT	.	189	95	163	0	.	7	6	1	0	0	G	92027761	T	G	92027761	3	3	61	1	0	0	0	0	1	0	0	0	630	1464	51	5	2842	5	ANKIB1	7	92027761	Missense_Mutation	SNP	T	TCGA-PK-A5H8-01A-11D-A29I-10		92027761	67110902	25	11947										
THAP5	168451	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	108205172	108205172	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	3	1	0.771666666666667	1.54333333333333	0.385833333333333	1	1	0	acttcttgagtttccaaagaTtgatgaatactttctgaatt	6	6	2	5	rs142576735		TCGA-PK-A5H8-01A-11D-A29I-10	TCGA-PK-A5H8-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	59162a9b-9c64-4525-80ea-143fd766b6b2	cf83fa12-254e-4252-8a99-ac629bc5118b	.	THAP5-68	NM_001130475	exon3	c.A651G	p.Q217Q	CAAAGATTGATGA	.	88	15	72	0	T|1.000;C|0.000	5	5	0	0	0	C	108205172	T	C	108205172	2	2	61	1	0	0	0	0	0	0	0	1	15884	1490	52	4		4	THAP5	7	108205172	Silent	SNP	T	TCGA-PK-A5H8-01A-11D-A29I-10	16177411	108205172	50933491	26	11948										
PCMTD1	115294	bcgsc.ca	37	chr8	52733110	52733110	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	3	1	0.771666666666667	1.54333333333333	0.385833333333333	1	1	0	gctgaggaataagctgattaCccacaaatacgtaagtgtta	9	7	0	2	novel		TCGA-PK-A5H8-01A-11D-A29I-10	TCGA-PK-A5H8-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	59162a9b-9c64-4525-80ea-143fd766b6b2	cf83fa12-254e-4252-8a99-ac629bc5118b	.	PCMTD1-68	NM_052937	exon6	c.G875A	p.G292D	TGATTACCCACAA	.	178	8	218	4	.	17	17	0	0	0	T	52733110	C	T	52733110	3	4	61	1	0	0	0	0	1	0	0	0	11615	507	18	3	202	3	PCMTD1	8	52733110	Missense_Mutation	SNP	C	TCGA-PK-A5H8-01A-11D-A29I-10		52733110	93630912	27	11949										
RIPK2	8767	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr8	90777603	90777603	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0434782608695652	3	1	0.771666666666667	1.54333333333333	0.385833333333333	1	1	0	tgatgttgcttggccattgaGatttcgcatcctgcatgaaa	10	8	0	3	novel		TCGA-PK-A5H8-01A-11D-A29I-10	TCGA-PK-A5H8-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	59162a9b-9c64-4525-80ea-143fd766b6b2	cf83fa12-254e-4252-8a99-ac629bc5118b	.	RIPK2-523	NM_003821	exon3	c.G362C	p.R121T	CATTGAGATTTCG	.	100	54	62	0	.	1	0	1	0	0	C	90777603	G	C	90777603	3	2	61	1	0	0	0	0	1	0	0	0	13416	942	33	3	372	3	RIPK2	8	90777603	Missense_Mutation	SNP	G	TCGA-PK-A5H8-01A-11D-A29I-10	38044493	90777603	55586419	28	11950										
EXT1	2131	hgsc.bcm.edu;bcgsc.ca	37	chr8	118817057	118817057	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	3	1	0.771666666666667	1.54333333333333	0.385833333333333	1	1	0	aggaagttcatgagaatgtcCtcacaattggccaattggtc	10	8	2	1	rs142710059	byfrequency	TCGA-PK-A5H8-01A-11D-A29I-10	TCGA-PK-A5H8-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	59162a9b-9c64-4525-80ea-143fd766b6b2	cf83fa12-254e-4252-8a99-ac629bc5118b	.	EXT1-660	NM_000127	exon10	c.G1959A	p.E653E	AATGTCCTCACAA	.	286	19	284	0	C|0.994;T|0.006	31	30	1	0	0	T	118817057	C	T	118817057	2	4	61	1	0	0	0	0	0	0	0	1	5336	680	24	3		3	EXT1	8	118817057	Silent	SNP	C	TCGA-PK-A5H8-01A-11D-A29I-10	28039454	118817057	27546965	29	11951										
PRUNE2	158471	ucsc.edu	37	chr9	79318585	79318585	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	3	1	0.771666666666667	1.54333333333333	0.385833333333333	1	1	0	cacccaggccctgagtccctGgcatccagtgatggatcacc	10	16	1	2	rs17180718	byfrequency	TCGA-PK-A5H8-01A-11D-A29I-10	TCGA-PK-A5H8-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	59162a9b-9c64-4525-80ea-143fd766b6b2	cf83fa12-254e-4252-8a99-ac629bc5118b	.	PRUNE2-157	NM_015225	exon9	c.C7944G	p.A2648A	GTCCCTGGCATCC	.	37	4	52	0	G|0.976;C|0.024	0	0	0	0	0	C	79318585	G	C	79318585	2	2	61	1	0	0	0	0	0	0	0	1	12673	1335	47	3		3	PRUNE2	9	79318585	Silent	SNP	G	TCGA-PK-A5H8-01A-11D-A29I-10		79318585	61894846	30	11952										
INVS	27130	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	103008983	103008983	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	3	1	0.771666666666667	1.54333333333333	0.385833333333333	1	1	0	atcctttatgtgggcagctgGcaaaggcagtgatgatgtcc	13	8	0	2	novel		TCGA-PK-A5H8-01A-11D-A29I-10	TCGA-PK-A5H8-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	59162a9b-9c64-4525-80ea-143fd766b6b2	cf83fa12-254e-4252-8a99-ac629bc5118b	.	INVS-92	NM_183245	exon8	c.G992T	p.G331V	CAGCTGGCAAAGG	.	250	27	405	1	.	0	0	0	0	0	T	103008983	G	T	103008983	3	4	61	1	0	0	0	0	1	0	0	0	7808	1203	42	3	1018	3	INVS	9	103008983	Missense_Mutation	SNP	G	TCGA-PK-A5H8-01A-11D-A29I-10	23690398	103008983	38204448	31	11953										
OR1L8	138881	bcgsc.ca	37	chr9	125330325	125330325	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	3	1	0.771666666666667	1.54333333333333	0.385833333333333	1	1	0	gagcaggagaaggccaccagCaggacacagtggtggtggct	17	9	0	1	rs10985703	byfrequency	TCGA-PK-A5H8-01A-11D-A29I-10	TCGA-PK-A5H8-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	59162a9b-9c64-4525-80ea-143fd766b6b2	cf83fa12-254e-4252-8a99-ac629bc5118b	.	OR1L8-70	NM_001004454	exon1	c.G432C	p.L144L	CACCAGCAGGACA	.	220	7	309	1	C|0.662;G|0.338	0	0	0	0	0	G	125330325	C	G	125330325	2	3	61	1	0	0	0	0	0	0	0	1	10996	697	25	3		3	OR1L8	9	125330325	Silent	SNP	C	TCGA-PK-A5H8-01A-11D-A29I-10	22321342	125330325	15883106	32	11954										
NUP188	23511	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr9	131719265	131719266	+	Frame_Shift_Ins	INS	-	-	GT													0.0434782608695652	3	1	0.771666666666667	1.54333333333333	0.385833333333333	1	1	0	cagagtgtgcagttactccaINSgtgttacctgcaagaggact					novel		TCGA-PK-A5H8-01A-11D-A29I-10	TCGA-PK-A5H8-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	59162a9b-9c64-4525-80ea-143fd766b6b2	cf83fa12-254e-4252-8a99-ac629bc5118b	.	NUP188-207	NM_015354	exon5	c.281_282insGT	p.Q94fs	TACTCCAGTGTTA	.	118	48	206	0	.	0	0	0	0	0	GT	131719266	-	GT	131719265	7	5	61	1	0	1	1	0	0	0	0	0	10787	188	7	0	299	0	NUP188	9	131719265	Frame_Shift_Ins	INS	-	TCGA-PK-A5H8-01A-11D-A29I-10	6388940	131719265	9494166	33	11955										
NOTCH1	4851	bcgsc.ca	37	chr9	139407932	139407932	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	3	1	0.771666666666667	1.54333333333333	0.385833333333333	1	1	0	caagggttggattcacactcAttgttgttgatgtcacagtt	10	7	3	1	rs2229971	byfrequency	TCGA-PK-A5H8-01A-11D-A29I-10	TCGA-PK-A5H8-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	59162a9b-9c64-4525-80ea-143fd766b6b2	cf83fa12-254e-4252-8a99-ac629bc5118b	.	NOTCH1-5459	NM_017617	exon14	c.T2265C	p.N755N	ACACTCATTGTTG	.	111	7	206	2	A|0.484;G|0.516	0	0	0	0	0	G	139407932	A	G	139407932	2	3	61	1	0	0	0	0	0	0	0	1	10576	214	8	4		4	NOTCH1	9	139407932	Silent	SNP	A	TCGA-PK-A5H8-01A-11D-A29I-10	7688667	139407932	1805499	34	11956										
NOTCH1	4851	broad.mit.edu	37	chr9	139411769	139411769	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	3	1	0.771666666666667	1.54333333333333	0.385833333333333	1	1	0	attgatcttgtccaggcagcGgccattgtgcaggcaggggc	15	10	1	1	novel		TCGA-PK-A5H8-01A-11D-A29I-10	TCGA-PK-A5H8-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	59162a9b-9c64-4525-80ea-143fd766b6b2	cf83fa12-254e-4252-8a99-ac629bc5118b	.	NOTCH1-5459	NM_017617	exon9	c.C1510A	p.R504S	GGCAGCGGCCATT	.	90	3	181	1	.	0	0	0	0	0	T	139411769	G	T	139411769	3	4	61	1	0	0	0	0	1	0	0	0	10576	1116	39	2	6261	2	NOTCH1	9	139411769	Missense_Mutation	SNP	G	TCGA-PK-A5H8-01A-11D-A29I-10	3837	139411769	1801662	35	11957										
SVIL	6840	bcgsc.ca	37	chr10	29839864	29839864	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	3	1	0.771666666666667	1.54333333333333	0.385833333333333	1	1	0	gtcccggggtacagagaactAgcatctctgcttgactcttc	10	12	2	2	rs1270874	byfrequency	TCGA-PK-A5H8-01A-11D-A29I-10	TCGA-PK-A5H8-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	59162a9b-9c64-4525-80ea-143fd766b6b2	cf83fa12-254e-4252-8a99-ac629bc5118b	.	SVIL-96	NM_003174	exon8	c.T489G	p.A163A	AGAACTAGCATCT	.	121	6	205	2	A|0.289;C|0.711	0	0	0	0	0	C	29839864	A	C	29839864	2	2	61	1	0	0	0	0	0	0	0	1	15458	407	15	5		5	SVIL	10	29839864	Silent	SNP	A	TCGA-PK-A5H8-01A-11D-A29I-10		29839864	105694883	36	11958										
MAT1A	4143	ucsc.edu;bcgsc.ca	37	chr10	82034842	82034842	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	3	1	0.771666666666667	1.54333333333333	0.385833333333333	1	1	0	acccagcgggcagcatatgcAgctgagcggtctaccttggt	13	12	1	1	rs10887711	byfrequency	TCGA-PK-A5H8-01A-11D-A29I-10	TCGA-PK-A5H8-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	59162a9b-9c64-4525-80ea-143fd766b6b2	cf83fa12-254e-4252-8a99-ac629bc5118b	.	MAT1A-90	NM_000429	exon7	c.T882C	p.A294A	ATATGCAGCTGAG	.	40	5	79	0	A|0.230;G|0.770	5	5	0	0	0	G	82034842	A	G	82034842	2	3	61	1	0	0	0	0	0	0	0	1	9357	175	7	4		4	MAT1A	10	82034842	Silent	SNP	A	TCGA-PK-A5H8-01A-11D-A29I-10	52194978	82034842	53499905	37	11959			1	57		2	2	13	N	T_A	2.674665e-05
MAT1A	4143	ucsc.edu;bcgsc.ca	37	chr10	82034854	82034854	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	3	1	0.771666666666667	1.54333333333333	0.385833333333333	1	1	0	gcatatgcagctgagcggtcTaccttggtgtagtccttccc	11	12	1	1	rs10788546	byfrequency	TCGA-PK-A5H8-01A-11D-A29I-10	TCGA-PK-A5H8-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	59162a9b-9c64-4525-80ea-143fd766b6b2	cf83fa12-254e-4252-8a99-ac629bc5118b	.	MAT1A-90	NM_000429	exon7	c.A870G	p.V290V	GCGGTCTACCTTG	.	43	5	77	0	T|0.236;C|0.764	2	2	0	0	0	C	82034854	T	C	82034854	2	2	61	1	0	0	0	0	0	0	0	1	9357	1509	53	4		4	MAT1A	10	82034854	Silent	SNP	T	TCGA-PK-A5H8-01A-11D-A29I-10	12	82034854	53499893	38	11960			1	57		2	2	13	N	T_A	2.674665e-05
LRIT1	26103	broad.mit.edu;bcgsc.ca	37	chr10	85992141	85992141	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	3	1	0.771666666666667	1.54333333333333	0.385833333333333	1	1	0	aggctgcacaatcacccgccGcatgctgtgctgcccaaaga	10	15	1	1	novel		TCGA-PK-A5H8-01A-11D-A29I-10	TCGA-PK-A5H8-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	59162a9b-9c64-4525-80ea-143fd766b6b2	cf83fa12-254e-4252-8a99-ac629bc5118b	.	LRIT1-90	NM_015613	exon4	c.C1414A	p.R472R	CCCGCCGCATGCT	.	129	6	210	0	.	0	0	0	0	0	T	85992141	G	T	85992141	2	4	61	1	0	0	0	0	0	0	0	1	8974	1086	38	2		2	LRIT1	10	85992141	Silent	SNP	G	TCGA-PK-A5H8-01A-11D-A29I-10	3957287	85992141	49542606	39	11961										
C10orf95	79946	hgsc.bcm.edu	37	chr10	104210735	104210735	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	3	1	0.771666666666667	1.54333333333333	0.385833333333333	1	1	0	tcccgggccggctgcggaagCtgtgggcctggactgggggt	20	11	0	0	rs2281878	byfrequency	TCGA-PK-A5H8-01A-11D-A29I-10	TCGA-PK-A5H8-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	59162a9b-9c64-4525-80ea-143fd766b6b2	cf83fa12-254e-4252-8a99-ac629bc5118b	.	C10orf95-91	NM_024886	exon2	c.G253T	p.A85S	CGGAAGCTGTGGG	.	5	5	2	0	C|0.759;A|0.241	0	0	0	0	0	A	104210735	C	A	104210735	3	1	61	1	0	0	0	0	1	0	0	0	1630	797	28	3	524	3	C10orf95	10	104210735	Missense_Mutation	SNP	C	TCGA-PK-A5H8-01A-11D-A29I-10	18218594	104210735	31324012	40	11962										
ADD3	120	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr10	111879036	111879036	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	3	1	0.771666666666667	1.54333333333333	0.385833333333333	1	1	0	tcttctgggagatgttgcctAttatgactaccaagggtcac	10	9	3	2	novel		TCGA-PK-A5H8-01A-11D-A29I-10	TCGA-PK-A5H8-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	59162a9b-9c64-4525-80ea-143fd766b6b2	cf83fa12-254e-4252-8a99-ac629bc5118b	.	ADD3-157	NM_001121	exon7	c.A785G	p.Y262C	TTGCCTATTATGA	.	93	34	157	0	.	2	1	1	0	0	G	111879036	A	G	111879036	3	3	61	1	0	0	0	0	1	0	0	0	306	449	16	4	807	4	ADD3	10	111879036	Missense_Mutation	SNP	A	TCGA-PK-A5H8-01A-11D-A29I-10	7668301	111879036	23655711	41	11963										
MUC2	4583	hgsc.bcm.edu	37	chr11	1092602	1092619	+	In_Frame_Del	DEL	CCACCACTCCCAGCCCTC	CCACCACTCCCAGCCCTC	-													0.0434782608695652	3	1	0.771666666666667	1.54333333333333	0.385833333333333	1	1	0	caccactcccagccctccaaCcaccactcccagccctccaa					novel		TCGA-PK-A5H8-01A-11D-A29I-10	TCGA-PK-A5H8-10A-01D-A29L-10	CCACCACTCCCAGCCCTC	CCACCACTCCCAGCCCTC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	59162a9b-9c64-4525-80ea-143fd766b6b2	cf83fa12-254e-4252-8a99-ac629bc5118b	.	MUC2-90	NM_002457	exon30	c.4421_4438del	p.1474_1480del	CTCCAACCACCAC	.	163	25	258	0	.	0	0	0	0	0	-	1092619	CCACCACTCCCAGCCCTC	-	1092602	7	5	61	1	0	1	0	1	0	0	0	0	10003	507	18	0	4539	0	MUC2	11	1092602	In_Frame_Del	DEL	CCACCACTCCCAGCCCTC	TCGA-PK-A5H8-01A-11D-A29I-10		1092602	133913914	42	11964										
MUC5B	727897	bcgsc.ca	37	chr11	1250488	1250488	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	3	1	0.771666666666667	1.54333333333333	0.385833333333333	1	1	0	ccccagcgcgcgcagctctgCgaggaccactgtgtggacgg	15	15	1	0	rs2075859	byfrequency	TCGA-PK-A5H8-01A-11D-A29I-10	TCGA-PK-A5H8-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	59162a9b-9c64-4525-80ea-143fd766b6b2	cf83fa12-254e-4252-8a99-ac629bc5118b	.	.	NM_002458	exon9	c.C1065T	p.C355C	GCTCTGCGAGGAC	.	88	5	155	0	C|0.605;T|0.395	0	0	0	0	0	T	1250488	C	T	1250488	2	4	61	1	0	0	0	0	0	0	0	1	10007	776	27	1		1	MUC5B	11	1250488	Silent	SNP	C	TCGA-PK-A5H8-01A-11D-A29I-10	157886	1250488	133756028	43	11965										
MUC5B	727897	bcgsc.ca	37	chr11	1271429	1271429	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	3	1	0.771666666666667	1.54333333333333	0.385833333333333	1	1	0	cactggatccacggccacccCgtcctccaccccagggacca	8	21	0	0	rs2943516		TCGA-PK-A5H8-01A-11D-A29I-10	TCGA-PK-A5H8-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	59162a9b-9c64-4525-80ea-143fd766b6b2	cf83fa12-254e-4252-8a99-ac629bc5118b	.	.	NM_002458	exon31	c.C13319T	p.P4440L	CCACCCCGTCCTC	.	563	15	980	9	C|0.522;T|0.479	0	0	0	0	0	T	1271429	C	T	1271429	3	4	61	1	0	0	0	0	1	0	0	0	10007	652	23	1	13450	1	MUC5B	11	1271429	Missense_Mutation	SNP	C	TCGA-PK-A5H8-01A-11D-A29I-10	20941	1271429	133735087	44	11966										
CAPRIN1	4076	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	34104425	34104425	+	Splice_Site	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	3	1	0.771666666666667	1.54333333333333	0.385833333333333	1	1	0	gtgaagttgaatcaacagagGtatgattttaatttaatgct	9	3	1	4	novel		TCGA-PK-A5H8-01A-11D-A29I-10	TCGA-PK-A5H8-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	59162a9b-9c64-4525-80ea-143fd766b6b2	cf83fa12-254e-4252-8a99-ac629bc5118b	.	CAPRIN1-91	NM_203364	exon8	c.879+1G>T	.	ACAGAGGTATGAT	.	51	21	151	0	.	1	0	1	0	0	T	34104425	G	T	34104425	5	4	61	1	0	0	0	0	0	0	1	0	2641	1275	44	3	906	3	CAPRIN1	11	34104425	Splice_Site	SNP	G	TCGA-PK-A5H8-01A-11D-A29I-10	32832996	34104425	100902091	45	11967										
OR4C3	256144	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr11	48347234	48347234	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	3	1	0.771666666666667	1.54333333333333	0.385833333333333	1	1	0	cctcctacattgtcatcctgTactccttgaggtcccacagt	6	15	1	1	novel		TCGA-PK-A5H8-01A-11D-A29I-10	TCGA-PK-A5H8-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	59162a9b-9c64-4525-80ea-143fd766b6b2	cf83fa12-254e-4252-8a99-ac629bc5118b	.	OR4C3-69	NM_001004702	exon1	c.T742C	p.Y248H	ATCCTGTACTCCT	.	222	13	357	0	.	0	0	0	0	0	C	48347234	T	C	48347234	3	2	61	1	0	0	0	0	1	0	0	0	11079	1638	57	4	744	4	OR4C3	11	48347234	Missense_Mutation	SNP	T	TCGA-PK-A5H8-01A-11D-A29I-10	14242809	48347234	86659282	46	11968										
PDE3A	5139	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr12	20766633	20766633	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	3	1	0.771666666666667	1.54333333333333	0.385833333333333	1	1	0	agacaagcttgctattccaaAggtaggtagtaatgacatac	9	7	0	2	novel		TCGA-PK-A5H8-01A-11D-A29I-10	TCGA-PK-A5H8-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	59162a9b-9c64-4525-80ea-143fd766b6b2	cf83fa12-254e-4252-8a99-ac629bc5118b	.	PDE3A-94	NM_000921	exon3	c.A1268T	p.K423M	TTCCAAAGGTAGG	.	70	33	88	0	.	0	0	0	0	0	T	20766633	A	T	20766633	3	4	61	1	0	0	0	0	1	0	0	0	11666	86	3	5	1278	5	PDE3A	12	20766633	Missense_Mutation	SNP	A	TCGA-PK-A5H8-01A-11D-A29I-10		20766633	113085262	47	11969										
ASB8	140461	hgsc.bcm.edu;bcgsc.ca	37	chr12	48543591	48543603	+	Frame_Shift_Del	DEL	GCCCCGCTCTCTA	GCCCCGCTCTCTA	-													0.0434782608695652	3	1	0.771666666666667	1.54333333333333	0.385833333333333	1	1	0	aatccagggcattgacagagGccccgctctctaggagagcc					novel		TCGA-PK-A5H8-01A-11D-A29I-10	TCGA-PK-A5H8-10A-01D-A29L-10	GCCCCGCTCTCTA	GCCCCGCTCTCTA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	59162a9b-9c64-4525-80ea-143fd766b6b2	cf83fa12-254e-4252-8a99-ac629bc5118b	.	ASB8-226	NM_024095	exon4	c.413_425del	p.138_142del	ACAGAGGCCCCGC	.	111	41	128	1	.	0	0	0	0	0	-	48543603	GCCCCGCTCTCTA	-	48543591	7	5	61	1	0	1	0	1	0	0	0	0	1030	1203	42	0	445	0	ASB8	12	48543591	Frame_Shift_Del	DEL	GCCCCGCTCTCTA	TCGA-PK-A5H8-01A-11D-A29I-10	27776958	48543591	85308304	48	11970										
KRT1	3848	hgsc.bcm.edu	37	chr12	53069243	53069243	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	3	1	0.771666666666667	1.54333333333333	0.385833333333333	1	1	0	acctccggagccgtagctgcTacctccggagccatagctgc	11	16	0	0	rs77846840		TCGA-PK-A5H8-01A-11D-A29I-10	TCGA-PK-A5H8-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	59162a9b-9c64-4525-80ea-143fd766b6b2	cf83fa12-254e-4252-8a99-ac629bc5118b	.	KRT1-92	NM_006121	exon9	c.A1669G	p.S557G	AGCTGCTACCTCC	.	45	11	36	0	T|0.500;C|0.500	0	0	0	0	0	C	53069243	T	C	53069243	3	2	61	1	0	0	0	0	1	0	0	0	8468	1522	53	4	269	4	KRT1	12	53069243	Missense_Mutation	SNP	T	TCGA-PK-A5H8-01A-11D-A29I-10	4525652	53069243	80782652	49	11971										
NUAK1	9891	bcgsc.ca	37	chr12	106460938	106460938	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	3	1	0.771666666666667	1.54333333333333	0.385833333333333	1	1	0	attccagtgtgggcatttcaGggctgaccagggctgggtcc	15	10	1	1	rs3741883	byfrequency	TCGA-PK-A5H8-01A-11D-A29I-10	TCGA-PK-A5H8-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	59162a9b-9c64-4525-80ea-143fd766b6b2	cf83fa12-254e-4252-8a99-ac629bc5118b	.	NUAK1-359	NM_014840	exon7	c.C1628G	p.P543R	ATTTCAGGGCTGA	.	203	7	190	2	G|0.795;C|0.205	4	4	0	0	0	C	106460938	G	C	106460938	3	2	61	1	0	0	0	0	1	0	0	0	10741	1000	35	3	361	3	NUAK1	12	106460938	Missense_Mutation	SNP	G	TCGA-PK-A5H8-01A-11D-A29I-10	53391695	106460938	27390957	50	11972										
SUDS3	64426	hgsc.bcm.edu;bcgsc.ca	37	chr12	118852225	118852225	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	3	1	0.771666666666667	1.54333333333333	0.385833333333333	1	1	0	gctcttcgtgatccgccggcGctcagctgcttgactttcta	10	14	3	2	novel		TCGA-PK-A5H8-01A-11D-A29I-10	TCGA-PK-A5H8-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	59162a9b-9c64-4525-80ea-143fd766b6b2	cf83fa12-254e-4252-8a99-ac629bc5118b	.	SUDS3-90	NM_022491	exon12	c.G974T	p.R325L	GCCGGCGCTCAGC	.	53	4	52	0	.	23	23	0	0	0	T	118852225	G	T	118852225	3	4	61	1	0	0	0	0	1	0	0	0	15404	1087	38	2	1020	2	SUDS3	12	118852225	Missense_Mutation	SNP	G	TCGA-PK-A5H8-01A-11D-A29I-10	12391287	118852225	14999670	51	11973										
GJB2	2706	bcgsc.ca	37	chr13	20763642	20763642	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	3	1	0.771666666666667	1.54333333333333	0.385833333333333	1	1	0	aatgcgaaaaatgaagaggaCggtgagccagatctttccaa	11	7	1	4	rs2274084	byfrequency	TCGA-PK-A5H8-01A-11D-A29I-10	TCGA-PK-A5H8-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	59162a9b-9c64-4525-80ea-143fd766b6b2	cf83fa12-254e-4252-8a99-ac629bc5118b	.	GJB2-90	NM_004004	exon2	c.G79A	p.V27I	AGAGGACGGTGAG	.	267	8	421	6	C|0.947;T|0.053	2	2	0	0	0	T	20763642	C	T	20763642	3	4	61	1	0	0	0	0	1	0	0	0	6428	536	19	1	605	1	GJB2	13	20763642	Missense_Mutation	SNP	C	TCGA-PK-A5H8-01A-11D-A29I-10		20763642	94406236	52	11974										
ARHGEF7	8874	bcgsc.ca	37	chr13	111870037	111870037	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	3	1	0.771666666666667	1.54333333333333	0.385833333333333	1	1	0	cccttttaggacatgaccgaTaatagcaacaatcaactggt	7	10	1	1	rs2296354	byfrequency	TCGA-PK-A5H8-01A-11D-A29I-10	TCGA-PK-A5H8-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	59162a9b-9c64-4525-80ea-143fd766b6b2	cf83fa12-254e-4252-8a99-ac629bc5118b	.	ARHGEF7-232	NM_001113511	exon6	c.T543C	p.D181D	GACCGATAATAGC	.	195	6	304	1	T|0.807;C|0.193	0	0	0	0	0	C	111870037	T	C	111870037	2	2	61	1	0	0	0	0	0	0	0	1	911	1403	49	4		4	ARHGEF7	13	111870037	Silent	SNP	T	TCGA-PK-A5H8-01A-11D-A29I-10	91106395	111870037	3299841	53	11975										
UNC13C	440279	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	54307147	54307147	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0434782608695652	3	1	0.771666666666667	1.54333333333333	0.385833333333333	1	1	0	ttgattatgaaacaaacagtCtttttgaccaacagcttgat	6	7	1	4	novel		TCGA-PK-A5H8-01A-11D-A29I-10	TCGA-PK-A5H8-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	59162a9b-9c64-4525-80ea-143fd766b6b2	cf83fa12-254e-4252-8a99-ac629bc5118b	.	UNC13C-51	NM_001080534	exon1	c.C2047G	p.L683V	AACAGTCTTTTTG	.	83	10	128	0	.	0	0	0	0	0	G	54307147	C	G	54307147	3	3	61	1	0	0	0	0	1	0	0	0	17024	913	32	3	2049	3	UNC13C	15	54307147	Missense_Mutation	SNP	C	TCGA-PK-A5H8-01A-11D-A29I-10		54307147	48224245	54	11976										
MYO15A	51168	bcgsc.ca	37	chr17	18041507	18041507	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	3	1	0.771666666666667	1.54333333333333	0.385833333333333	1	1	0	cctgcatcaacctcatctcaCtgaagccttatggcatcctg	6	15	3	1	rs2280777	byfrequency	TCGA-PK-A5H8-01A-11D-A29I-10	TCGA-PK-A5H8-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	59162a9b-9c64-4525-80ea-143fd766b6b2	cf83fa12-254e-4252-8a99-ac629bc5118b	.	MYO15A-97	NM_016239	exon16	c.C4954T	p.L1652L	ATCTCACTGAAGC	.	82	5	129	1	C|0.501;N|0.000	0	0	0	0	0	T	18041507	C	T	18041507	2	4	61	1	0	0	0	0	0	0	0	1	10091	564	20	3		3	MYO15A	17	18041507	Silent	SNP	C	TCGA-PK-A5H8-01A-11D-A29I-10		18041507	63153703	55	11977										
CCL4L2	388372	broad.mit.edu	37	chr17	34641466	34641466	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	3	1	0.771666666666667	1.54333333333333	0.385833333333333	1	1	0	acagattccaaaccaaaagaGgcaagcaagtctgcgctgac	9	11	1	3	rs148287175	byfrequency	TCGA-PK-A5H8-01A-11D-A29I-10	TCGA-PK-A5H8-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	59162a9b-9c64-4525-80ea-143fd766b6b2	cf83fa12-254e-4252-8a99-ac629bc5118b	.	CCL4L2-46	NM_207007	exon3	c.G208A	p.G70S	AAAAGAGGCAAGC	.	159	4	529	0	G|0.997;A|0.003	60	60	0	0	0	A	34641466	G	A	34641466	3	1	61	1	0	0	0	0	1	0	0	0	2910	1000	35	3	509	3	CCL4L2	17	34641466	Missense_Mutation	SNP	G	TCGA-PK-A5H8-01A-11D-A29I-10	16599959	34641466	46553744	56	11978										
EPN3	55040	bcgsc.ca	37	chr17	48614119	48614119	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	3	1	0.771666666666667	1.54333333333333	0.385833333333333	1	1	0	ggcggcggctcaatgacagcGgcaagaactggcggcacgtg	17	11	1	2	novel		TCGA-PK-A5H8-01A-11D-A29I-10	TCGA-PK-A5H8-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	59162a9b-9c64-4525-80ea-143fd766b6b2	cf83fa12-254e-4252-8a99-ac629bc5118b	.	EPN3-91	NM_017957	exon2	c.G202T	p.G68C	GACAGCGGCAAGA	.	131	5	233	0	.	0	0	0	0	0	T	48614119	G	T	48614119	3	4	61	1	0	0	0	0	1	0	0	0	5200	1116	39	2	204	2	EPN3	17	48614119	Missense_Mutation	SNP	G	TCGA-PK-A5H8-01A-11D-A29I-10	13972653	48614119	32581091	57	11979										
UNK	85451	broad.mit.edu;bcgsc.ca	37	chr17	73806016	73806016	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0434782608695652	3	1	0.771666666666667	1.54333333333333	0.385833333333333	1	1	0	acgtctactgcaccaagtacGacgaggctacaggcctctgc	10	14	2	0	novel		TCGA-PK-A5H8-01A-11D-A29I-10	TCGA-PK-A5H8-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	59162a9b-9c64-4525-80ea-143fd766b6b2	cf83fa12-254e-4252-8a99-ac629bc5118b	.	UNK-68	NM_001080419	exon2	c.G280A	p.D94N	AAGTACGACGAGG	.	202	8	301	0	.	2	2	0	0	0	A	73806016	G	A	73806016	3	1	61	1	0	0	0	0	1	0	0	0	17038	1058	37	1	518	1	UNK	17	73806016	Missense_Mutation	SNP	G	TCGA-PK-A5H8-01A-11D-A29I-10	25191897	73806016	7389194	58	11980										
DSG3	1830	hgsc.bcm.edu	37	chr18	29049127	29049127	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	3	1	0.771666666666667	1.54333333333333	0.385833333333333	1	1	0	ctccctggtacttacagacaGtcagaacaatcggtgtgaga	10	10	1	3	novel		TCGA-PK-A5H8-01A-11D-A29I-10	TCGA-PK-A5H8-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	59162a9b-9c64-4525-80ea-143fd766b6b2	cf83fa12-254e-4252-8a99-ac629bc5118b	.	DSG3-98	NM_001944	exon12	c.G1712T	p.S571I	CAGACAGTCAGAA	.	80	4	150	0	.	0	0	0	0	0	T	29049127	G	T	29049127	3	4	61	1	0	0	0	0	1	0	0	0	4789	1029	36	3	1758	3	DSG3	18	29049127	Missense_Mutation	SNP	G	TCGA-PK-A5H8-01A-11D-A29I-10		29049127	49028121	59	11981										
FZR1	51343	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	3527019	3527019	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	3	1	0.771666666666667	1.54333333333333	0.385833333333333	1	1	0	tccagccccgatgacggcaaCgatgtgtctccctactccct	8	17	1	1	rs138835338	byfrequency	TCGA-PK-A5H8-01A-11D-A29I-10	TCGA-PK-A5H8-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	59162a9b-9c64-4525-80ea-143fd766b6b2	cf83fa12-254e-4252-8a99-ac629bc5118b	.	FZR1-227	NM_001136198	exon5	c.C429T	p.N143N	CGGCAACGATGTG	.	257	114	200	1	C|0.996;T|0.004	50	29	21	0	0	T	3527019	C	T	3527019	2	4	61	1	0	0	0	0	0	0	0	1	6157	535	19	1		1	FZR1	19	3527019	Silent	SNP	C	TCGA-PK-A5H8-01A-11D-A29I-10		3527019	55601964	60	11982										
ZNF546	339327	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	40520583	40520583	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	3	1	0.771666666666667	1.54333333333333	0.385833333333333	1	1	0	tcatactggtgagaaaccctAtgaatgtaaggaatgtggga	12	5	1	2	novel		TCGA-PK-A5H8-01A-11D-A29I-10	TCGA-PK-A5H8-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	59162a9b-9c64-4525-80ea-143fd766b6b2	cf83fa12-254e-4252-8a99-ac629bc5118b	.	ZNF546-155	NM_178544	exon7	c.A1406G	p.Y469C	AACCCTATGAATG	.	57	25	54	0	.	25	24	0	0	1	G	40520583	A	G	40520583	3	3	61	1	0	0	0	0	1	0	0	0	18015	449	16	4	1424	4	ZNF546	19	40520583	Missense_Mutation	SNP	A	TCGA-PK-A5H8-01A-11D-A29I-10	36993564	40520583	18608400	61	11983										
CTU1	90353	hgsc.bcm.edu	37	chr19	51602298	51602298	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.0434782608695652	3	1	0.771666666666667	1.54333333333333	0.385833333333333	1	1	0	gcgcggcagggcgcccccctCgccgggagagcccaggcccc	16	20	0	1	rs12983578		TCGA-PK-A5H8-01A-11D-A29I-10	TCGA-PK-A5H8-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	59162a9b-9c64-4525-80ea-143fd766b6b2	cf83fa12-254e-4252-8a99-ac629bc5118b	.	CTU1-68	NM_145232	exon3	c.G607C	p.E203Q	CCCCCTCGCCGGG	.	5	4	1	0	C|0.900;G|0.100	1	0	1	0	0	G	51602298	C	G	51602298	3	3	61	1	0	0	0	0	1	0	0	0	4053	893	31	2	443	2	CTU1	19	51602298	Missense_Mutation	SNP	C	TCGA-PK-A5H8-01A-11D-A29I-10	11081715	51602298	7526685	62	11984										
ZFP28	140612	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	57051018	57051018	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	3	1	0.771666666666667	1.54333333333333	0.385833333333333	1	1	0	gccttccagggacactgctcTtccccaggagagaaacaaga	10	13	1	2	novel		TCGA-PK-A5H8-01A-11D-A29I-10	TCGA-PK-A5H8-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	59162a9b-9c64-4525-80ea-143fd766b6b2	cf83fa12-254e-4252-8a99-ac629bc5118b	.	ZFP28-91	NM_020828	exon2	c.T233C	p.L78P	CTGCTCTTCCCCA	.	129	66	88	0	.	2	0	2	0	0	C	57051018	T	C	57051018	3	2	61	1	0	0	0	0	1	0	0	0	17679	1609	56	4	239	4	ZFP28	19	57051018	Missense_Mutation	SNP	T	TCGA-PK-A5H8-01A-11D-A29I-10	5448720	57051018	2077965	63	11985										
ZNF814	730051	ucsc.edu	37	chr19	58384712	58384712	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	3	1	0.771666666666667	1.54333333333333	0.385833333333333	1	1	0	acataaggtctttctccagtAtggccatgctggtgtagaat	10	8	2	1	novel		TCGA-PK-A5H8-01A-11D-A29I-10	TCGA-PK-A5H8-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	59162a9b-9c64-4525-80ea-143fd766b6b2	cf83fa12-254e-4252-8a99-ac629bc5118b	.	.	NM_001144989	exon3	c.T2046C	p.H682H	TCCAGTATGGCCA	.	233	1	194	0	.	3	2	1	0	0	G	58384712	A	G	58384712	2	3	61	1	0	0	0	0	0	0	0	1	18213	446	16	4		4	ZNF814	19	58384712	Silent	SNP	A	TCGA-PK-A5H8-01A-11D-A29I-10	1333694	58384712	744271	64	11986										
TGM6	343641	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr20	2384245	2384245	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	3	1	0.771666666666667	1.54333333333333	0.385833333333333	1	1	0	aggtgtgttccggtgcggccCagcctcagtcaccgccatcc	12	16	2	0	novel		TCGA-PK-A5H8-01A-11D-A29I-10	TCGA-PK-A5H8-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	59162a9b-9c64-4525-80ea-143fd766b6b2	cf83fa12-254e-4252-8a99-ac629bc5118b	.	TGM6-94	NM_198994	exon9	c.C1112T	p.P371L	GCGGCCCAGCCTC	.	136	32	100	0	.	0	0	0	0	0	T	2384245	C	T	2384245	3	4	61	1	0	0	0	0	1	0	0	0	15871	594	21	3	1146	3	TGM6	20	2384245	Missense_Mutation	SNP	C	TCGA-PK-A5H8-01A-11D-A29I-10		2384245	60641275	65	11987										
CRYBB2	1415	bcgsc.ca	37	chr22	25627604	25627604	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	3	1	0.771666666666667	1.54333333333333	0.385833333333333	1	1	0	cagtaccccggctaccgtggGctgcagtacctgctggagaa	13	13	0	1	rs8140949	byfrequency	TCGA-PK-A5H8-01A-11D-A29I-10	TCGA-PK-A5H8-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	59162a9b-9c64-4525-80ea-143fd766b6b2	cf83fa12-254e-4252-8a99-ac629bc5118b	.	CRYBB2-90	NM_000496	exon6	c.G483A	p.G161G	CCGTGGGCTGCAG	.	169	8	489	3	G|0.755;A|0.245	0	0	0	0	0	A	25627604	G	A	25627604	2	1	61	1	0	0	0	0	0	0	0	1	3917	1190	42	3		3	CRYBB2	22	25627604	Silent	SNP	G	TCGA-PK-A5H8-01A-11D-A29I-10		25627604	25676962	66	11988										
GAL3ST1	9514	bcgsc.ca	37	chr22	30953295	30953295	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	3	1	0.771666666666667	1.54333333333333	0.385833333333333	1	1	0	gggcacggcataggagtacaCcagcagcaggaaactagtga	14	9	0	1	rs2267161	byfrequency	TCGA-PK-A5H8-01A-11D-A29I-10	TCGA-PK-A5H8-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	59162a9b-9c64-4525-80ea-143fd766b6b2	cf83fa12-254e-4252-8a99-ac629bc5118b	.	GAL3ST1-90	NM_004861	exon3	c.G85A	p.V29M	AGTACACCAGCAG	.	237	8	669	5	C|0.672;T|0.328	0	0	0	0	0	T	30953295	C	T	30953295	3	4	61	1	0	0	0	0	1	0	0	0	6217	507	18	3	1194	3	GAL3ST1	22	30953295	Missense_Mutation	SNP	C	TCGA-PK-A5H8-01A-11D-A29I-10	5325691	30953295	20351271	67	11989										
FOXO4	4303	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chrX	70321291	70321294	+	Frame_Shift_Del	DEL	CCTC	CCTC	-													0.0434782608695652	3	1	0.771666666666667	1.54333333333333	0.385833333333333	1	1	0	gttgctgggggggcttccttCctccagtaagctggccacgg					novel		TCGA-PK-A5H8-01A-11D-A29I-10	TCGA-PK-A5H8-10A-01D-A29L-10	CCTC	CCTC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	59162a9b-9c64-4525-80ea-143fd766b6b2	cf83fa12-254e-4252-8a99-ac629bc5118b	.	FOXO4-986	NM_005938	exon2	c.1211_1214del	p.404_405del	TTCCTTCCTCCAG	.	74	33	70	0	.	0	0	0	0	0	-	70321294	CCTC	-	70321291	7	5	61	1	0	1	0	1	0	0	0	0	6044	855	30	0	1217	0	FOXO4	23	70321291	Frame_Shift_Del	DEL	CCTC	TCGA-PK-A5H8-01A-11D-A29I-10		70321291	84949269	68	11990										
CYLC1	1538	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	83128178	83128178	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0434782608695652	3	1	0.771666666666667	1.54333333333333	0.385833333333333	1	1	0	gtagaagagaaaactaaaagAcaaaatgaggcagataaaac	9	4	0	5	novel		TCGA-PK-A5H8-01A-11D-A29I-10	TCGA-PK-A5H8-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	59162a9b-9c64-4525-80ea-143fd766b6b2	cf83fa12-254e-4252-8a99-ac629bc5118b	.	CYLC1-112	NM_021118	exon4	c.A462G	p.R154R	TAAAAGACAAAAT	.	81	79	82	1	.	0	0	0	0	0	G	83128178	A	G	83128178	2	3	61	1	0	0	0	0	0	0	0	1	4147	272	10	4		4	CYLC1	23	83128178	Silent	SNP	A	TCGA-PK-A5H8-01A-11D-A29I-10	12806887	83128178	72142382	69	11991										
SAMD11	148398	hgsc.bcm.edu	37	chr1	877831	877831	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	cgcaggcggagatgttcgccTggcagcaggagctcctgcgg	17	12	0	1	rs6672356		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SAMD11-90	NM_152486	exon10	c.T1027C	p.W343R	TTCGCCTGGCAGC	.	7	7	0	0	T|0.004;C|0.996	0	0	0	0	0	C	877831	T	C	877831	3	2	62	1	0	0	0	0	1	0	0	0	13851	1580	55	4	1061	4	SAMD11	1	877831	Missense_Mutation	SNP	T	TCGA-PK-A5HB-01A-11D-A29I-10		877831	248372790	1	11992										
AGRN	375790	hgsc.bcm.edu;broad.mit.edu	37	chr1	979279	979279	+	Frame_Shift_Del	DEL	C	C	-													0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gtgtgtccccggtgtgagcaCcccccgcccggccccgtgtg					novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	AGRN-136	NM_198576	exon10	c.1875delC	p.H625fs	TGAGCACCCCCCG	.	73	24	13	0	.	0	0	0	0	0	-	979279	C	-	979279	7	5	62	1	0	1	0	1	0	0	0	0	397	506	18	0	1913	0	AGRN	1	979279	Frame_Shift_Del	DEL	C	TCGA-PK-A5HB-01A-11D-A29I-10	101448	979279	248271342	2	11993										
SDF4	51150	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr1	1153176	1153176	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	attggctgcagcgggagtgtGggcacgttctggaaggttcc	17	8	1	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SDF4-154	NM_016547	exon7	c.C921T	p.P307P	GAGTGTGGGCACG	.	31	15	21	0	.	0	0	0	0	0	A	1153176	G	A	1153176	2	1	62	1	0	0	0	0	0	0	0	1	13997	1335	47	3		3	SDF4	1	1153176	Silent	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	173897	1153176	248097445	3	11994										
SCNN1D	6339	ucsc.edu;bcgsc.ca	37	chr1	1221031	1221031	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	cactcagcacaacgctgcctGcaaacagggccaggtagggc	12	14	1	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SCNN1D-90	NM_001130413	exon6	c.G545A	p.C182Y	CTGCCTGCAAACA	.	400	168	320	2	.	1	0	1	0	0	A	1221031	G	A	1221031	3	1	62	1	0	0	0	0	1	0	0	0	13964	1319	46	3	261	3	SCNN1D	1	1221031	Missense_Mutation	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	67855	1221031	248029590	4	11995										
ACAP3	116983	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	1230156	1230156	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	aaagccaggacgtccgagctGccatccgagctgcccccaag	11	16	0	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ACAP3-90	NM_030649	exon20	c.C1854T	p.G618G	CGAGCTGCCATCC	.	333	146	214	1	.	74	46	28	0	0	A	1230156	G	A	1230156	2	1	62	1	0	0	0	0	0	0	0	1	120	1306	46	3		3	ACAP3	1	1230156	Silent	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	9125	1230156	248020465	5	11996										
CPSF3L	54973	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	1247523	1247523	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ctgcacacagtggtccttcaGgacgctgtggggaggctcgg	16	11	1	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CPSF3L-90	NM_001256456	exon18	c.C1630A	p.L544M	CCTTCAGGACGCT	.	56	21	22	0	.	1	1	0	0	0	T	1247523	G	T	1247523	3	4	62	1	0	0	0	0	1	0	0	0	3833	991	35	3	198	3	CPSF3L	1	1247523	Missense_Mutation	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	17367	1247523	248003098	6	11997										
DVL1	1855	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr1	1275439	1275439	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	tgcagcaacatgtcgccgggCtcgatgcggccgtcagcggc	15	14	1	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	DVL1-658	NM_004421	exon8	c.G888T	p.E296D	GCCGGGCTCGATG	.	143	63	84	0	.	136	75	61	0	0	A	1275439	C	A	1275439	3	1	62	1	0	0	0	0	1	0	0	0	4846	796	28	3	1156	3	DVL1	1	1275439	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	27916	1275439	247975182	7	11998										
CALML6	163688	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	1848206	1848206	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	tgcagacaaagggttcttcaActgcgatggtttcctggcac	11	10	2	1	rs200415259	alternate_allele	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CALML6-90	NM_138705	exon4	c.A269T	p.N90I	TCTTCAACTGCGA	.	219	92	146	0	A|0.999;C|0.000	0	0	0	0	0	T	1848206	A	T	1848206	3	4	62	1	0	0	0	0	1	0	0	0	2596	43	2	5	283	5	CALML6	1	1848206	Missense_Mutation	SNP	A	TCGA-PK-A5HB-01A-11D-A29I-10	572767	1848206	247402415	8	11999										
GABRD	2563	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	1959038	1959038	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	tcacctccactgtggcctgcGacatggacctggccaaatac	9	15	1	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	GABRD-92	NM_000815	exon5	c.G493A	p.D165N	GCCTGCGACATGG	.	244	110	163	1	.	11	11	0	0	0	A	1959038	G	A	1959038	3	1	62	1	0	0	0	0	1	0	0	0	6188	1058	37	1	511	1	GABRD	1	1959038	Missense_Mutation	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	110832	1959038	247291583	9	12000										
PEX10	5192	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	2341850	2341850	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	aagtaggccacatctgagagCagctcaacctccttcctcca	7	15	2	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PEX10-90	NM_002617	exon2	c.G153A	p.L51L	TGAGAGCAGCTCA	.	208	98	151	0	.	18	11	7	0	0	T	2341850	C	T	2341850	2	4	62	1	0	0	0	0	0	0	0	1	11765	697	25	3		3	PEX10	1	2341850	Silent	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	382812	2341850	246908771	10	12001										
MMEL1	79258	broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr1	2522472	2522472	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	tggggtgcatgggggtgcccCgggcacagtggaacgtgtct	19	9	1	0	rs199926063		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	MMEL1-90	NM_033467	exon24	c.G2297A	p.R766Q	GTGCCCCGGGCAC	.	175	73	52	1	.	18	5	13	0	0	T	2522472	C	T	2522472	3	4	62	1	0	0	0	0	1	0	0	0	9674	652	23	1	46	1	MMEL1	1	2522472	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	180622	2522472	246728149	11	12002										
ARHGEF16	27237	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	3380095	3380095	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ggcatgctgaggcggaacctGcggaaccaatcctaccgggc	14	13	0	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ARHGEF16-228	NM_014448	exon2	c.G447A	p.L149L	GAACCTGCGGAAC	.	354	161	239	0	.	1	1	0	0	0	A	3380095	G	A	3380095	2	1	62	1	0	0	0	0	0	0	0	1	899	1306	46	3		3	ARHGEF16	1	3380095	Silent	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	857623	3380095	245870526	12	12003										
CCDC27	148870	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	3672052	3672052	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gaggccgatttgtccggagaGattgacaacagctcggagac	14	9	0	3	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CCDC27-91	NM_152492	exon3	c.G474T	p.E158D	CGGAGAGATTGAC	.	199	82	132	0	.	0	0	0	0	0	T	3672052	G	T	3672052	3	4	62	1	0	0	0	0	1	0	0	0	2807	933	33	3	484	3	CCDC27	1	3672052	Missense_Mutation	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	291957	3672052	245578569	13	12004										
C1orf174	339448	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	3807605	3807605	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	acgttcgcgtgtctgtggctTtgtgggatgaggaagtctgt	16	6	2	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	C1orf174-68	NM_207356	exon3	c.A146C	p.K49T	GTGGCTTTGTGGG	.	45	28	34	0	.	0	0	0	0	0	G	3807605	T	G	3807605	3	3	62	1	0	0	0	0	1	0	0	0	2021	1841	64	5	593	5	C1orf174	1	3807605	Missense_Mutation	SNP	T	TCGA-PK-A5HB-01A-11D-A29I-10	135553	3807605	245443016	14	12005										
NOL9	79707	hgsc.bcm.edu	37	chr1	6614415	6614415	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ctgggcttgcagtaaccgccAccgtaggcgccgccgaccgc	13	17	0	0	rs6693400		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	NOL9-515	NM_024654	exon1	c.T148C	p.W50R	ACCGCCACCGTAG	.	4	4	0	0	A|0.020;G|0.980	0	0	0	0	0	G	6614415	A	G	6614415	3	3	62	1	0	0	0	0	1	0	0	0	10557	159	6	4	2008	4	NOL9	1	6614415	Missense_Mutation	SNP	A	TCGA-PK-A5HB-01A-11D-A29I-10	2806810	6614415	242636206	15	12006										
CAMTA1	23261	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	7721841	7721841	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	agcagctcaggcttctcggtGgaacagctggtgcagcagat	14	10	2	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CAMTA1-520	NM_015215	exon8	c.G720C	p.V240V	CTCGGTGGAACAG	.	525	235	324	0	.	2	2	0	0	0	C	7721841	G	C	7721841	2	2	62	1	0	0	0	0	0	0	0	1	2619	1335	47	3		3	CAMTA1	1	7721841	Silent	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	1107426	7721841	241528780	16	12007										
VAMP3	9341	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	7837354	7837354	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	agcgcagccaagttgaagagGaaatattggtggaagaattg	14	4	0	3	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	VAMP3-90	NM_004781	exon3	c.G207A	p.R69R	GAAGAGGAAATAT	.	161	58	126	0	.	231	106	125	0	0	A	7837354	G	A	7837354	2	1	62	1	0	0	0	0	0	0	0	1	17152	1165	41	3		3	VAMP3	1	7837354	Silent	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	115513	7837354	241413267	17	12008										
PER3	8863	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	7887208	7887208	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ttccaagcagacgcggtcggCcggctgcaggaaagggaagc	16	11	0	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PER3-93	NM_016831	exon17	c.C2195T	p.A732V	GGTCGGCCGGCTG	.	196	104	86	0	.	14	5	9	0	0	T	7887208	C	T	7887208	3	4	62	1	0	0	0	0	1	0	0	0	11760	739	26	3	2261	3	PER3	1	7887208	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	49854	7887208	241363413	18	12009										
ERRFI1	54206	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	8074279	8074279	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ttatgggtgtcagtggagggGtggaagcacaaaccccattc	14	8	1	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ERRFI1-91	NM_018948	exon4	c.C380G	p.T127S	GGAGGGGTGGAAG	.	86	48	65	0	.	30	16	14	0	0	C	8074279	G	C	8074279	3	2	62	1	0	0	0	0	1	0	0	0	5257	1261	44	3	1012	3	ERRFI1	1	8074279	Missense_Mutation	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	187071	8074279	241176342	19	12010										
TMEM201	199953	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	9657097	9657097	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	tcaagcagctggccgccttcGctccccgcgaggaggtgagg	15	14	1	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TMEM201-68	NM_001010866	exon3	c.G415A	p.A139T	GCCTTCGCTCCCC	.	308	112	150	0	.	15	7	8	0	0	A	9657097	G	A	9657097	3	1	62	1	0	0	0	0	1	0	0	0	16163	1087	38	1	425	1	TMEM201	1	9657097	Missense_Mutation	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	1582818	9657097	239593524	20	12011										
UBE4B	10277	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	10190785	10190785	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ctttccaggttaaagtggttGaaaaatacttctcagggcct	9	8	1	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	UBE4B-229	NM_001105562	exon14	c.G1825A	p.E609K	GTGGTTGAAAAAT	.	123	47	130	0	.	0	0	0	0	0	A	10190785	G	A	10190785	3	1	62	1	0	0	0	0	1	0	0	0	16921	1291	45	3	1879	3	UBE4B	1	10190785	Missense_Mutation	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	533688	10190785	239059836	21	12012										
KIF1B	23095	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	10364624	10364624	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	actgacaaacccagccactgTagccagtttgtgacacctcc	7	15	0	2	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	KIF1B-93	NM_183416	exon21	c.T3381C	p.C1127C	CCACTGTAGCCAG	.	361	169	276	1	.	5	3	2	0	0	C	10364624	T	C	10364624	2	2	62	1	0	0	0	0	0	0	0	1	8305	1644	57	4		4	KIF1B	1	10364624	Silent	SNP	T	TCGA-PK-A5HB-01A-11D-A29I-10	173839	10364624	238885997	22	12013										
CASZ1	54897	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	10699787	10699787	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ggcgaagtggcagctgagtgAggccttgaagcgcttgaagt	17	7	0	4	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CASZ1-113	NM_001079843	exon21	c.T4492A	p.S1498T	TGAGTGAGGCCTT	.	155	58	105	2	.	2	1	1	0	0	T	10699787	A	T	10699787	3	4	62	1	0	0	0	0	1	0	0	0	2691	304	11	5	791	5	CASZ1	1	10699787	Missense_Mutation	SNP	A	TCGA-PK-A5HB-01A-11D-A29I-10	335163	10699787	238550834	23	12014										
CASZ1	54897	hgsc.bcm.edu	37	chr1	10719929	10719929	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ggagccaggctgggggtgggCggaaccttggcggggcctgg	23	9	0	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CASZ1-113	NM_001079843	exon6	c.G1170A	p.P390P	GGTGGGCGGAACC	.	29	15	0	0	.	1	1	0	0	0	T	10719929	C	T	10719929	2	4	62	1	0	0	0	0	0	0	0	1	2691	755	27	1		1	CASZ1	1	10719929	Silent	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	20142	10719929	238530692	24	12015										
SRM	6723	broad.mit.edu;bcgsc.ca	37	chr1	11115019	11115019	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	cagccccgcaggccacccacCttgcgggcaaactcgggcag	12	18	0	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SRM-90	NM_003132	exon7	c.G888T	p.K296N	ACCCACCTTGCGG	.	172	134	49	1	.	0	0	0	0	0	A	11115019	C	A	11115019	3	1	62	1	0	0	0	0	1	0	0	0	15188	695	24	3	28	3	SRM	1	11115019	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	395090	11115019	238135602	25	12016										
KIAA2013	90231	broad.mit.edu;mdanderson.org	37	chr1	11982929	11982929	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gatgtagagcagtggcgtgaTgggctgtgtcaccatgaccg	16	8	1	3	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	KIAA2013-91	NM_138346	exon2	c.A1651G	p.I551V	GCGTGATGGGCTG	.	873	242	629	1	.	183	90	93	0	0	C	11982929	T	C	11982929	3	2	62	1	0	0	0	0	1	0	0	0	8288	1464	51	4	261	4	KIAA2013	1	11982929	Missense_Mutation	SNP	T	TCGA-PK-A5HB-01A-11D-A29I-10	867910	11982929	237267692	26	12017										
DHRS3	9249	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	12632790	12632792	+	In_Frame_Del	DEL	GGA	GGA	-													0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gagggcatgcattgtccatgGgaggaggaggagggcctggt					novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	GGA	GGA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	DHRS3-91	NM_004753	exon5	c.788_790del	p.263_264del	TCCATGGGAGGAG	.	102	34	83	0	.	0	0	0	0	0	-	12632792	GGA	-	12632790	7	5	62	1	0	1	0	1	0	0	0	0	4502	1232	43	0	126	0	DHRS3	1	12632790	In_Frame_Del	DEL	GGA	TCGA-PK-A5HB-01A-11D-A29I-10	649861	12632790	236617831	27	12018										
PRAMEF1	65121	bcgsc.ca	37	chr1	12854135	12854135	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ggccagatggcctggagcctGggccctgtcctgcttcccag	14	15	0	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PRAMEF1-22	NM_023013	exon3	c.G359A	p.W120X	GAGCCTGGGCCCT	.	401	143	291	5	.	0	0	0	0	0	A	12854135	G	A	12854135	4	1	62	1	0	0	0	0	0	1	0	0	12457	1357	47	3	365	3	PRAMEF1	1	12854135	Nonsense_Mutation	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	221345	12854135	236396486	28	12019										
LOC440563	0	ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	13183603	13183603	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	acacctgcgtttcctcggttCacttttggctctgcagccag	9	14	2	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	.	NM_001136561	exon2	c.G270A	p.V90V	TCGGTTCACTTTT	.	299	112	225	0	.	0	0	0	0	0	T	13183603	C	T	13183603	2	4	62	1	0	0	0	0	0	0	0	1	8906	813	29	3		3	LOC440563	1	13183603	Silent	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	329468	13183603	236067018	29	12020										
PRAMEF19	645414	bcgsc.ca	37	chr1	13475084	13475084	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gaagagggtctgaagagtggCagcaactttctctagcagag	14	7	2	4	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	.	NM_001099790	exon3	c.G1045A	p.A349T	GAGTGGCAGCAAC	.	1504	616	1095	3	.	0	0	0	0	0	T	13475084	C	T	13475084	3	4	62	1	0	0	0	0	1	0	0	0	12466	710	25	3	398	3	PRAMEF19	1	13475084	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	291481	13475084	235775537	30	12021										
AGMAT	79814	hgsc.bcm.edu	37	chr1	15911349	15911349	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gggggctggttccggggcgcGtcggaagcctggcggctctg	21	11	1	0	rs3737705	byfrequency	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	AGMAT-91	NM_024758	exon1	c.C114T	p.D38D	GGGCGCGTCGGAA	.	17	10	0	0	G|0.647;A|0.353	0	0	0	0	0	A	15911349	G	A	15911349	2	1	62	1	0	0	0	0	0	0	0	1	385	1136	40	1		1	AGMAT	1	15911349	Silent	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	2436265	15911349	233339272	31	12022										
SPEN	23013	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr1	16174571	16174571	+	Silent	SNP	G	G	T													0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	acgccgcccagcatggtccgGgaaaccaggcatctctgggt					novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SPEN-298	NM_015001	exon1	c.G9T	p.R3R	GGTCCGGGAAACC	.	221	99	82	0	.	0	0	0	0	0	T	16174571	G	T	16174571	2	4	62	1	0	0	0	0	0	0	0	1	15075	1219	43	3		3	SPEN	1	16174571	Silent	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	263222	16174571	233076050	32	12023	136	2								
SPEN	23013	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr1	16174581	16174581	+	Missense_Mutation	SNP	C	C	T													0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gcatggtccgggaaaccaggCatctctgggtgggcaactta					novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SPEN-298	NM_015001	exon1	c.C19T	p.H7Y	ACCAGGCATCTCT	.	247	109	93	0	.	2	2	0	0	0	T	16174581	C	T	16174581	3	4	62	1	0	0	0	0	1	0	0	0	15075	710	25	3	21	3	SPEN	1	16174581	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	10	16174581	233076040	33	12024	136	2								
EPHA2	1969	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	16461615	16461615	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ctggaccaggtaggtggtgtCtggggccaggtcgtccaggg	19	9	1	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	EPHA2-1419	NM_004431	exon7	c.G1498A	p.D500N	TGGTGTCTGGGGC	.	113	52	70	2	.	3	1	2	0	0	T	16461615	C	T	16461615	3	4	62	1	0	0	0	0	1	0	0	0	5180	913	32	3	1476	3	EPHA2	1	16461615	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	287034	16461615	232789006	34	12025										
NBPF1	55672	broad.mit.edu;bcgsc.ca	37	chr1	16891333	16891333	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	tgggttttgatcttcttcccCttcttttcttccccttctcc	4	15	5	1	rs3872309	bycluster;byfrequency	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	.	.	.	.	.	CTTCCCCTTCTTT	.	46	17	34	0	C|0.500;T|0.500	224	218	6	0	0	T	16891333	C	T	16891333	3	4	62	1	0	0	0	0	1	0	0	0	10220	681	24	3	282	3	NBPF1	1	16891333	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	429718	16891333	232359288	35	12026										
PADI3	51702	broad.mit.edu	37	chr1	17575686	17575686	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gagcatcccaccagcgcggtGtgtgtggctggcgtggagac	17	11	0	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PADI3-132	NM_016233	exon1	c.G54A	p.V18V	CGCGGTGTGTGTG	.	284	7	170	0	.	1	1	0	0	0	A	17575686	G	A	17575686	2	1	62	1	0	0	0	0	0	0	0	1	11408	1364	48	3		3	PADI3	1	17575686	Silent	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	684353	17575686	231674935	36	12027										
TAS1R2	80834	broad.mit.edu	37	chr1	19181157	19181157	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gagaacacgaccacgacgcgCgctgtgctctgctgcagctt	12	14	1	1	rs202163137	alternate_allele	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TAS1R2-93	NM_152232	exon3	c.G807A	p.A269A	GACGCGCGCTGTG	.	219	6	127	0	C|0.999;A|0.000	0	0	0	0	0	T	19181157	C	T	19181157	2	4	62	1	0	0	0	0	0	0	0	1	15600	755	27	1		1	TAS1R2	1	19181157	Silent	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	1605471	19181157	230069464	37	12028										
HTR6	3362	broad.mit.edu	37	chr1	20005583	20005583	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gggagcgccaggccagcctgGcctcgccatcactgcgcacc	13	18	1	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	HTR6-91	NM_000871	exon3	c.G1045T	p.A349S	AGCCTGGCCTCGC	.	116	20	33	3	.	8	8	0	0	0	T	20005583	G	T	20005583	3	4	62	1	0	0	0	0	1	0	0	0	7472	1203	42	3	1055	3	HTR6	1	20005583	Missense_Mutation	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	824426	20005583	229245038	38	12029										
RAP1GAP	5909	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	21940490	21940490	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	caccctcacctgagcagcagCcgcaggtgctcttggtcccc	10	18	2	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	RAP1GAP-245	NM_001145658	exon8	c.G576A	p.R192R	CAGCAGCCGCAGG	.	121	61	111	0	.	0	0	0	0	0	T	21940490	C	T	21940490	2	4	62	1	0	0	0	0	0	0	0	1	13072	726	26	3		3	RAP1GAP	1	21940490	Silent	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	1934907	21940490	227310131	39	12030										
EPHA8	2046	ucsc.edu;bcgsc.ca	37	chr1	22915595	22915595	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gctggtggccaacctgctggCccacatgaactactccttct	9	15	1	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	EPHA8-1380	NM_020526	exon5	c.C1211T	p.A404V	TGCTGGCCCACAT	.	424	186	194	3	.	0	0	0	0	0	T	22915595	C	T	22915595	3	4	62	1	0	0	0	0	1	0	0	0	5186	739	26	3	1229	3	EPHA8	1	22915595	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	975105	22915595	226335026	40	12031										
EPHA8	2046	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	22927299	22927299	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ctactggaacatgaccaaccGggatgtgagtgccaagccct	11	12	0	2	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	EPHA8-1380	NM_020526	exon14	c.G2534A	p.R845Q	CCAACCGGGATGT	.	221	97	122	2	.	0	0	0	0	0	A	22927299	G	A	22927299	3	1	62	1	0	0	0	0	1	0	0	0	5186	1116	39	1	2761	1	EPHA8	1	22927299	Missense_Mutation	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	11704	22927299	226323322	41	12032										
HNRNPR	10236	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	23636987	23636987	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	aagtatcctgataaaattccTggttgtcattattgtaacca	6	7	1	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	HNRNPR-24	NM_001102398	exon11	c.A1871T	p.Q624L	AATTCCTGGTTGT	.	71	25	62	0	.	109	53	56	0	0	A	23636987	T	A	23636987	3	1	62	1	0	0	0	0	1	0	0	0	7293	1580	55	5	43	5	HNRNPR	1	23636987	Missense_Mutation	SNP	T	TCGA-PK-A5HB-01A-11D-A29I-10	709688	23636987	225613634	42	12033										
ASAP3	55616	bcgsc.ca;mdanderson.org	37	chr1	23763445	23763445	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	caggtccaaggtgagtgactGcatgcgcgaaaagcgcacgc	14	11	0	2	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ASAP3-155	NM_017707	exon15	c.C1435T	p.Q479X	GTGACTGCATGCG	.	165	75	97	2	.	1	1	0	0	0	A	23763445	G	A	23763445	4	1	62	1	0	0	0	0	0	1	0	0	1013	1328	46	3	1320	3	ASAP3	1	23763445	Nonsense_Mutation	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	126458	23763445	225487176	43	12034										
MYOM3	127294	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	24417405	24417405	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	aaccgatagctctgaccttcGacgaggccttggattgggca	12	11	1	1	rs201898557		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	MYOM3-93	NM_152372	exon12	c.C1314T	p.V438V	ACCTTCGACGAGG	.	195	78	145	0	G|0.999;A|0.001	0	0	0	0	0	A	24417405	G	A	24417405	2	1	62	1	0	0	0	0	0	0	0	1	10121	1045	37	1		1	MYOM3	1	24417405	Silent	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	653960	24417405	224833216	44	12035										
GRHL3	57822	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	24664169	24664169	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	cccccaaagccatccacatcAagtcaggcgagtcacccatg	7	17	3	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	GRHL3-91	NM_021180	exon6	c.A745G	p.K249E	CACATCAAGTCAG	.	209	87	165	0	.	0	0	0	0	0	G	24664169	A	G	24664169	3	3	62	1	0	0	0	0	1	0	0	0	6786	131	5	4	788	4	GRHL3	1	24664169	Missense_Mutation	SNP	A	TCGA-PK-A5HB-01A-11D-A29I-10	246764	24664169	224586452	45	12036										
SRRM1	10250	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	24975468	24975468	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	tgcacaagaaaacatcgcggGaatcccttctgctttcctag	8	12	1	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SRRM1-93	NM_005839	exon4	c.G353A	p.G118E	TCGCGGGAATCCC	.	42	13	37	0	.	36	15	21	0	0	A	24975468	G	A	24975468	3	1	62	1	0	0	0	0	1	0	0	0	15205	1174	41	3	367	3	SRRM1	1	24975468	Missense_Mutation	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	311299	24975468	224275153	46	12037										
RPS6KA1	6195	hgsc.bcm.edu	37	chr1	26856442	26856442	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	cccagctcaaggagccctggCcgctcatggagctagtgcct	12	15	2	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	RPS6KA1-510	NM_002953	exon1	c.C31G	p.P11A	CCCTGGCCGCTCA	.	8	4	0	0	.	4	2	2	0	0	G	26856442	C	G	26856442	3	3	62	1	0	0	0	0	1	0	0	0	13685	739	26	3	33	3	RPS6KA1	1	26856442	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	1880974	26856442	222394179	47	12038										
RPS6KA1	6195	hgsc.bcm.edu	37	chr1	26856462	26856462	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ccgctcatggagctagtgccTctggacccggaggtgagtga	15	11	2	2	rs11800553	byfrequency	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	RPS6KA1-510	NM_002953	exon1	c.T51G	p.P17P	AGTGCCTCTGGAC	.	7	7	0	0	T|0.065;G|0.935	0	0	0	0	0	G	26856462	T	G	26856462	2	3	62	1	0	0	0	0	0	0	0	1	13685	1538	54	5		5	RPS6KA1	1	26856462	Silent	SNP	T	TCGA-PK-A5HB-01A-11D-A29I-10	20	26856462	222394159	48	12039										
TMEM222	84065	ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	27648800	27648800	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	agacggacatgaagcaatatCaaggctccggcggcgtcgcc	13	12	1	2	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TMEM222-90	NM_032125	exon1	c.C112A	p.Q38K	CAATATCAAGGCT	.	388	144	233	3	.	34	21	13	0	0	A	27648800	C	A	27648800	3	1	62	1	0	0	0	0	1	0	0	0	16182	827	29	3	114	3	TMEM222	1	27648800	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	792338	27648800	221601821	49	12040										
GPR3	2827	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	27720657	27720657	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	tggttggcgtgctggcaatgGcctttaccgccagcatcggc	14	12	0	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	GPR3-91	NM_005281	exon2	c.G355A	p.A119T	GCAATGGCCTTTA	.	119	53	63	0	.	24	13	11	0	0	A	27720657	G	A	27720657	3	1	62	1	0	0	0	0	1	0	0	0	6706	1203	42	3	357	3	GPR3	1	27720657	Missense_Mutation	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	71857	27720657	221529964	50	12041										
AHDC1	27245	hgsc.bcm.edu	37	chr1	27877519	27877519	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	aggcccgggggggccgtgcgGtgagcacaagtccaggcgca	19	12	0	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	AHDC1-90	NM_001029882	exon6	c.C1108T	p.P370S	CGTGCGGTGAGCA	.	48	25	7	0	.	24	11	13	0	0	A	27877519	G	A	27877519	3	1	62	1	0	0	0	0	1	0	0	0	412	1261	44	3	3707	3	AHDC1	1	27877519	Missense_Mutation	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	156862	27877519	221373102	51	12042										
HCRTR1	3061	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	32084894	32084894	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	tgaagatgagtttctccgctAtctgtggcgcgattatctgt	11	8	3	3	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	HCRTR1-523	NM_001525	exon3	c.A101G	p.Y34C	TCCGCTATCTGTG	.	132	66	97	0	.	0	0	0	0	0	G	32084894	A	G	32084894	3	3	62	1	0	0	0	0	1	0	0	0	7022	449	16	4	103	4	HCRTR1	1	32084894	Missense_Mutation	SNP	A	TCGA-PK-A5HB-01A-11D-A29I-10	4207375	32084894	217165727	52	12043										
BAI2	576	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	32197006	32197006	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ggacgggttgcaagtgttgaCctccttgaacagcactgggg	15	9	0	2	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	BAI2-526	NM_001703	exon29	c.G3775A	p.V1259I	TGTTGACCTCCTT	.	199	91	120	0	.	1	1	0	0	0	T	32197006	C	T	32197006	3	4	62	1	0	0	0	0	1	0	0	0	1300	507	18	3	1002	3	BAI2	1	32197006	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	112112	32197006	217053615	53	12044										
BAI2	576	broad.mit.edu;bcgsc.ca	37	chr1	32198634	32198634	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	cctgcgcggagttgaagacaGcaaagagggcctggaagagg	17	8	0	4	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	BAI2-526	NM_001703	exon26	c.C3563T	p.A1188V	AAGACAGCAAAGA	.	450	16	330	0	.	3	2	1	0	0	A	32198634	G	A	32198634	3	1	62	1	0	0	0	0	1	0	0	0	1300	971	34	3	1226	3	BAI2	1	32198634	Missense_Mutation	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	1628	32198634	217051987	54	12045										
SFPQ	6421	hgsc.bcm.edu	37	chr1	35658609	35658609	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	cctccacgcctgtggaagccAccaccgccaccgccacgact	8	21	0	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SFPQ-231	NM_005066	exon1	c.T42C	p.G14G	GAAGCCACCACCG	.	17	9	3	0	.	58	31	27	0	0	G	35658609	A	G	35658609	2	3	62	1	0	0	0	0	0	0	0	1	14195	146	6	4		4	SFPQ	1	35658609	Silent	SNP	A	TCGA-PK-A5HB-01A-11D-A29I-10	3459975	35658609	213592012	55	12046										
MACF1	23499	hgsc.bcm.edu;bcgsc.ca	37	chr1	39751304	39751305	+	Frame_Shift_Ins	INS	-	-	GGTA													0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	cacctggaatcaggacaaccINSggtacaatgtgagtcagatg					novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	MACF1-165	NM_012090	exon15	c.1397_1398insGGTA	p.P466fs	GACAACCGGTACA	.	214	73	181	1	.	0	0	0	0	0	GGTA	39751305	-	GGTA	39751304	7	5	62	1	0	1	1	0	0	0	0	0	9172	652	23	0	1447	0	MACF1	1	39751304	Frame_Shift_Ins	INS	-	TCGA-PK-A5HB-01A-11D-A29I-10	4092695	39751304	209499317	56	12047										
MACF1	23499	broad.mit.edu	37	chr1	39760802	39760802	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	tactttcacttgagaaccacCcagccaagcagacagtggag	9	12	1	2	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	MACF1-165	NM_012090	exon20	c.C2254A	p.P752T	AACCACCCAGCCA	.	100	3	84	0	.	3	3	0	0	0	A	39760802	C	A	39760802	3	1	62	1	0	0	0	0	1	0	0	0	9172	623	22	3	2324	3	MACF1	1	39760802	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	9498	39760802	209489819	57	12048										
PPCS	79717	hgsc.bcm.edu	37	chr1	42922266	42922266	+	Frame_Shift_Del	DEL	C	C	-													0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	atggatccggtagccgagttCccccagcctcccggtgctgc					novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PPCS-90	NM_024664	exon1	c.30delC	p.F10fs	CGAGTTCCCCCAG	.	89	37	12	1	.	0	0	0	0	0	-	42922266	C	-	42922266	7	5	62	1	0	1	0	1	0	0	0	0	12334	854	30	0	32	0	PPCS	1	42922266	Frame_Shift_Del	DEL	C	TCGA-PK-A5HB-01A-11D-A29I-10	3161464	42922266	206328355	58	12049										
YBX1	4904	broad.mit.edu;bcgsc.ca	37	chr1	43166582	43166582	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	acttcaattaccgacgcagaCgcccagaaaaccctaaacca	5	15	1	2	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	YBX1-95	NM_004559	exon7	c.C871T	p.R291C	CGCAGACGCCCAG	.	601	65	472	2	.	1816	1814	1	1	0	T	43166582	C	T	43166582	3	4	62	1	0	0	0	0	1	0	0	0	17507	536	19	1	897	1	YBX1	1	43166582	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	244316	43166582	206084039	59	12050										
ERMAP	114625	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	43308843	43308843	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ccagagctgaaggatataatCctgtccttgccccctgacct	8	14	0	3	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ERMAP-91	NM_018538	exon11	c.C1368T	p.I456I	TATAATCCTGTCC	.	121	49	111	0	.	16	12	4	0	0	T	43308843	C	T	43308843	2	4	62	1	0	0	0	0	0	0	0	1	5247	845	30	3		3	ERMAP	1	43308843	Silent	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	142261	43308843	205941778	60	12051										
PTPRF	5792	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	44083409	44083409	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ctcctttcttatccataggcGtccccgggagtgactacatc	8	14	1	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PTPRF-232	NM_002840	exon25	c.G4198A	p.V1400I	ATAGGCGTCCCCG	.	342	134	235	1	.	0	0	0	0	0	A	44083409	G	A	44083409	3	1	62	1	0	0	0	0	1	0	0	0	12836	1145	40	1	4288	1	PTPRF	1	44083409	Missense_Mutation	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	774566	44083409	205167212	61	12052										
SLC6A9	6536	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	44466854	44466855	+	Missense_Mutation	DNP	GC	GC	TG													0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	acctggctggtgagggggatGcccagcaggaagccagccac					novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	GC	GC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SLC6A9-90	NM_201649	exon10	c.G1535C	p.G512A	GGGATGCCCAGCA	.	378	0	291	0	.	0	0	0	0	0	TG	44466855	GC	TG	44466854	3	4	62	1	0	0	0	0	1	0	0	0	14726	1306	46	3	604	3	SLC6A9	1	44466854	Missense_Mutation	DNP	GC	TCGA-PK-A5HB-01A-11D-A29I-10	383445	44466854	204783767	62	12053										
TESK2	10420	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	45923405	45923405	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ctccttcaaactcttcaagaCgctccacacgtggaggaaat	7	13	3	1	rs149714069	byfrequency	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TESK2-624	NM_007170	exon2	c.G53A	p.R18H	TCAAGACGCTCCA	.	114	47	80	1	C|0.998;T|0.002	1	1	0	0	0	T	45923405	C	T	45923405	3	4	62	1	0	0	0	0	1	0	0	0	15805	536	19	1	1702	1	TESK2	1	45923405	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	1456551	45923405	203327216	63	12054										
PIK3R3	8503	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	46509408	46509410	+	In_Frame_Del	DEL	GTT	GTT	-													0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	agcctgacgttgagggagtcGttgtgctgaaccaaggatgt					novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	GTT	GTT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PIK3R3-1309	NM_003629	exon10	c.1321_1323del	p.441_441del	GGAGTCGTTGTGC	.	169	74	142	0	.	0	0	0	0	0	-	46509410	GTT	-	46509408	7	5	62	1	0	1	0	1	0	0	0	0	11949	1136	40	0	66	0	PIK3R3	1	46509408	In_Frame_Del	DEL	GTT	TCGA-PK-A5HB-01A-11D-A29I-10	586003	46509408	202741213	64	12055										
PIK3R3	8503	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	46509521	46509521	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	agcagtgctgtagatcacacAgtgcttcacttccccatcgg	9	13	2	1	rs144541540		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PIK3R3-1309	NM_003629	exon10	c.T1210C	p.C404R	TCACACAGTGCTT	.	113	53	100	0	A|1.000;G|0.000	33	16	17	0	0	G	46509521	A	G	46509521	3	3	62	1	0	0	0	0	1	0	0	0	11949	188	7	4	179	4	PIK3R3	1	46509521	Missense_Mutation	SNP	A	TCGA-PK-A5HB-01A-11D-A29I-10	113	46509521	202741100	65	12056										
FOXD2	2306	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr1	47904233	47904233	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	atcaccatggccatcctgcaGagccccaagaagcggctgac	10	15	1	3	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	FOXD2-226	NM_004474	exon1	c.G426A	p.Q142Q	CCTGCAGAGCCCC	.	321	136	210	0	.	3	0	3	0	0	A	47904233	G	A	47904233	2	1	62	1	0	0	0	0	0	0	0	1	6016	933	33	3		3	FOXD2	1	47904233	Silent	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	1394712	47904233	201346388	66	12057										
DMRTA2	63950	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	chr1	50885264	50885264	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ttctccgagcctgagccgggCcgcacctctggggacgacgt	14	15	2	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	.	NM_032110	exon3	c.G702A	p.R234R	GCCGGGCCGCACC	.	109	50	18	0	.	0	0	0	0	0	T	50885264	C	T	50885264	2	4	62	1	0	0	0	0	0	0	0	1	4600	726	26	3		3	DMRTA2	1	50885264	Silent	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	2981031	50885264	198365357	67	12058										
BTF3L4	91408	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	52552390	52552390	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	tttttctttttcagatcttgTagaaaattttgatgaggcat	7	4	3	4	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	BTF3L4-135	NM_001243767	exon5	c.T235G	p.X79E	ATCTTGTAGAAAA	.	86	33	48	0	.	0	0	0	0	0	G	52552390	T	G	52552390	3	3	62	1	0	0	0	0	1	0	0	0	1555	1638	57	5	455	5	BTF3L4	1	52552390	Missense_Mutation	SNP	T	TCGA-PK-A5HB-01A-11D-A29I-10	1667126	52552390	196698231	68	12059										
GPX7	2882	broad.mit.edu;bcgsc.ca	37	chr1	53068170	53068170	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ggacttctacgacttcaaggCggtcaacatccggggcaaac	11	12	3	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	GPX7-90	NM_015696	exon1	c.C89T	p.A30V	TCAAGGCGGTCAA	.	359	162	130	1	.	0	0	0	0	0	T	53068170	C	T	53068170	3	4	62	1	0	0	0	0	1	0	0	0	6766	768	27	1	91	1	GPX7	1	53068170	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	515780	53068170	196182451	69	12060										
PODN	127435	broad.mit.edu	37	chr1	53535706	53535706	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	actgagccctgaggagcccgGgcctggcccagccgcggtca	15	16	1	2	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PODN-92	NM_153703	exon2	c.G323T	p.G108V	AGCCCGGGCCTGG	.	299	7	119	0	.	0	0	0	0	0	T	53535706	G	T	53535706	3	4	62	1	0	0	0	0	1	0	0	0	12207	1232	43	3	329	3	PODN	1	53535706	Missense_Mutation	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	467536	53535706	195714915	70	12061										
LRRC42	115353	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	54423901	54423902	+	Frame_Shift_Ins	INS	-	-	T													0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ggatctttcctgttgcaagcINSttggagatgagcatgaactt					novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	LRRC42-90	NM_001256409	exon4	c.553_554insT	p.L185fs	TGCAAGCTTGGAG	.	167	52	120	0	.	0	0	0	0	0	T	54423902	-	T	54423901	7	5	62	1	0	1	1	0	0	0	0	0	9027	797	28	0	559	0	LRRC42	1	54423901	Frame_Shift_Ins	INS	-	TCGA-PK-A5HB-01A-11D-A29I-10	888195	54423901	194826720	71	12062										
TACSTD2	4070	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	59042424	59042424	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ctcaggtcgcccttgtccgtGcggcgcacgcccaccgagtt	12	17	1	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TACSTD2-90	NM_002353	exon1	c.C405T	p.R135R	GTCCGTGCGGCGC	.	141	67	34	1	.	1	1	0	0	0	A	59042424	G	A	59042424	2	1	62	1	0	0	0	0	0	0	0	1	15545	1306	46	3		3	TACSTD2	1	59042424	Silent	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	4618523	59042424	190208197	72	12063										
HOOK1	51361	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	60312772	60312772	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gtgaagaacttgaaaagcagCtaatcgaattccagcatagg	10	7	0	3	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	HOOK1-154	NM_015888	exon10	c.C844T	p.L282L	AAGCAGCTAATCG	.	139	58	127	0	.	3	3	0	0	0	T	60312772	C	T	60312772	2	4	62	1	0	0	0	0	0	0	0	1	7303	796	28	3		3	HOOK1	1	60312772	Silent	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	1270348	60312772	188937849	73	12064										
ATG4C	84938	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	63282309	63282309	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ggatcacgtaattgcaggaaAtgtagaagaatttcgtaaag	11	4	1	2	rs11545528	alternate_allele	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ATG4C-91	NM_178221	exon4	c.A224T	p.N75I	CAGGAAATGTAGA	.	103	42	90	1	A|0.999;G|0.000	10	6	4	0	0	T	63282309	A	T	63282309	3	4	62	1	0	0	0	0	1	0	0	0	1099	101	4	5	234	5	ATG4C	1	63282309	Missense_Mutation	SNP	A	TCGA-PK-A5HB-01A-11D-A29I-10	2969537	63282309	185968312	74	12065										
EFCAB7	84455	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	63999139	63999139	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ctgtagttttgtaaattataTatgacaaccaacgagcaatg	7	6	0	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	EFCAB7-68	NM_032437	exon5	c.T501C	p.Y167Y	ATTATATATGACA	.	62	30	52	0	.	16	6	10	0	0	C	63999139	T	C	63999139	2	2	62	1	0	0	0	0	0	0	0	1	4951	1413	49	4		4	EFCAB7	1	63999139	Silent	SNP	T	TCGA-PK-A5HB-01A-11D-A29I-10	716830	63999139	185251482	75	12066										
DIRAS3	9077	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	68512838	68512838	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gcagcagcgtacttttccccAcaccagcggtgccgactacc	9	17	0	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	DIRAS3-848	NM_004675	exon2	c.T143C	p.V48A	TTCCCCACACCAG	.	204	82	215	1	.	9	8	1	0	0	G	68512838	A	G	68512838	3	3	62	1	0	0	0	0	1	0	0	0	4543	159	6	4	550	4	DIRAS3	1	68512838	Missense_Mutation	SNP	A	TCGA-PK-A5HB-01A-11D-A29I-10	4513699	68512838	180737783	76	12067										
ZNF326	284695	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	90486370	90486370	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ggtgttactgtagatgatcaCatgatgaaggtagagacagt	13	4	1	5	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ZNF326-91	NM_182976	exon10	c.C1194T	p.H398H	TGATCACATGATG	.	167	60	186	0	.	44	26	18	0	0	T	90486370	C	T	90486370	2	4	62	1	0	0	0	0	0	0	0	1	17883	477	17	3		3	ZNF326	1	90486370	Silent	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	21973532	90486370	158764251	77	12068										
HFM1	164045	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	91790300	91790300	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	tgtctcaaatgtaatataatAccaagccatcaatcttcctg	4	10	3	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	HFM1-112	NM_001017975	exon21	c.T2359C	p.Y787H	TATAATACCAAGC	.	180	83	143	0	.	1	0	1	0	0	G	91790300	A	G	91790300	3	3	62	1	0	0	0	0	1	0	0	0	7104	391	14	4	2024	4	HFM1	1	91790300	Missense_Mutation	SNP	A	TCGA-PK-A5HB-01A-11D-A29I-10	1303930	91790300	157460321	78	12069										
TGFBR3	7049	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	92200429	92200429	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ggcccaatttaacagatgttCatttccatgggggaagttcc	10	9	1	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TGFBR3-93	NM_001195683	exon5	c.G472A	p.E158K	GATGTTCATTTCC	.	98	23	117	2	.	202	129	73	0	0	T	92200429	C	T	92200429	3	4	62	1	0	0	0	0	1	0	0	0	15860	835	29	3	2135	3	TGFBR3	1	92200429	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	410129	92200429	157050192	79	12070										
DPYD	1806	hgsc.bcm.edu;bcgsc.ca	37	chr1	98165042	98165043	+	Frame_Shift_Ins	INS	-	-	T													0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	tgcagaataggcttcagacaINSttttttctgggggaggcagc					novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	DPYD-278	NM_000110	exon6	c.545_546insA	p.M182fs	TCAGACATTTTTT	.	102	41	96	1	.	0	0	0	0	0	T	98165043	-	T	98165042	7	5	62	1	0	1	1	0	0	0	0	0	4756	217	8	0	2604	0	DPYD	1	98165042	Frame_Shift_Ins	INS	-	TCGA-PK-A5HB-01A-11D-A29I-10	5964613	98165042	151085579	80	12071										
HIAT1	64645	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	100527406	100527406	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	cctaggtggtactttgctgtTatctctgtttctggggtttt	11	7	2	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	HIAT1-90	NM_033055	exon5	c.T387C	p.V129V	TGCTGTTATCTCT	.	125	45	128	0	.	56	32	24	0	0	C	100527406	T	C	100527406	2	2	62	1	0	0	0	0	0	0	0	1	7118	1741	61	4		4	HIAT1	1	100527406	Silent	SNP	T	TCGA-PK-A5HB-01A-11D-A29I-10	2362364	100527406	148723215	81	12072										
SASS6	163786	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	100586978	100586978	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gagaaatttctttatctccaCatcatttccaggtaaaagtt	5	8	3	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SASS6-70	NM_194292	exon5	c.G439A	p.V147M	TCTCCACATCATT	.	53	23	43	0	.	6	4	2	0	0	T	100586978	C	T	100586978	3	4	62	1	0	0	0	0	1	0	0	0	13885	478	17	3	1586	3	SASS6	1	100586978	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	59572	100586978	148663643	82	12073										
VAV3	10451	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	108298065	108298065	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ataccaaattctctatagatAgctgaaactgtttaatttca	4	7	2	2	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	VAV3-1339	NM_006113	exon12	c.T1157G	p.L386R	ATAGATAGCTGAA	.	69	19	83	0	.	1	1	0	0	0	C	108298065	A	C	108298065	3	2	62	1	0	0	0	0	1	0	0	0	17171	420	15	5	1475	5	VAV3	1	108298065	Missense_Mutation	SNP	A	TCGA-PK-A5HB-01A-11D-A29I-10	7711087	108298065	140952556	83	12074										
AKNAD1	254268	hgsc.bcm.edu	37	chr1	109369885	109369886	+	Frame_Shift_Ins	INS	-	-	T													0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	caattgaaaatcttccacagINSttgatccttccgtggccctt					novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	AKNAD1-93	NM_152763	exon11	c.1878_1879insA	p.N626fs	TCCACAGTTGATC	.	96	38	93	2	.	0	0	0	0	0	T	109369886	-	T	109369885	7	5	62	1	0	1	1	0	0	0	0	0	464	1020	36	0	656	0	AKNAD1	1	109369885	Frame_Shift_Ins	INS	-	TCGA-PK-A5HB-01A-11D-A29I-10	1071820	109369885	139880736	84	12075										
KIAA1324	57535	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	109740206	109740206	+	Frame_Shift_Del	DEL	C	C	-													0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gtctgccaggcagtcatcatCcccccagaggtgacaggcta					novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	KIAA1324-157	NM_020775	exon16	c.2232delC	p.I744fs	CATCATCCCCCCA	.	102	49	82	0	.	0	0	0	0	0	-	109740206	C	-	109740206	7	5	62	1	0	1	0	1	0	0	0	0	8244	845	30	0	2294	0	KIAA1324	1	109740206	Frame_Shift_Del	DEL	C	TCGA-PK-A5HB-01A-11D-A29I-10	370321	109740206	139510415	85	12076										
CELSR2	1952	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	109793092	109793092	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ccccacagggcaagctcacaCtgcccgaggagcacccgtgc	11	18	1	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CELSR2-526	NM_001408	exon1	c.C391G	p.L131V	CTCACACTGCCCG	.	128	57	126	0	.	2	1	1	0	0	G	109793092	C	G	109793092	3	3	62	1	0	0	0	0	1	0	0	0	3228	564	20	3	393	3	CELSR2	1	109793092	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	52886	109793092	139457529	86	12077										
GPR61	83873	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	110085867	110085867	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ccaagacgcctgccctccgaAaatttgtcttcgtcttccac	6	16	2	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	GPR61-91	NM_031936	exon2	c.A223G	p.K75E	CTCCGAAAATTTG	.	219	16	170	0	.	0	0	0	0	0	G	110085867	A	G	110085867	3	3	62	1	0	0	0	0	1	0	0	0	6722	15	1	4	225	4	GPR61	1	110085867	Missense_Mutation	SNP	A	TCGA-PK-A5HB-01A-11D-A29I-10	292775	110085867	139164754	87	12078										
GNAT2	2780	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	110148988	110148988	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gatgcccgtggttttgactcTggatcggagcacatcttgct	12	10	2	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	GNAT2-227	NM_005272	exon5	c.A532G	p.R178G	TGACTCTGGATCG	.	286	102	214	1	.	1	1	0	0	0	C	110148988	T	C	110148988	3	2	62	1	0	0	0	0	1	0	0	0	6532	1588	55	4	548	4	GNAT2	1	110148988	Missense_Mutation	SNP	T	TCGA-PK-A5HB-01A-11D-A29I-10	63121	110148988	139101633	88	12079										
ALX3	257	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	110607490	110607490	+	Frame_Shift_Del	DEL	G	G	-													0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	tcggcagtccaagggcagctGggggaagctggcagctttgg					novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ALX3-90	NM_006492	exon2	c.313delC	p.Q105fs	GCAGCTGGGGGAA	.	68	26	45	0	.	0	0	0	0	0	-	110607490	G	-	110607490	7	5	62	1	0	1	0	1	0	0	0	0	557	1357	47	0	730	0	ALX3	1	110607490	Frame_Shift_Del	DEL	G	TCGA-PK-A5HB-01A-11D-A29I-10	458502	110607490	138643131	89	12080										
KCNA2	3737	broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr1	111144784	111144784	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ctcttctggctttgcagaggTctgcgttcctgtttagaaga	11	9	3	3	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	KCNA2-91	NM_001204269	exon4	c.A903G	p.R301R	CAGAGGTCTGCGT	.	74	37	45	1	.	0	0	0	0	0	C	111144784	T	C	111144784	2	2	62	1	0	0	0	0	0	0	0	1	8024	1682	58	4		4	KCNA2	1	111144784	Silent	SNP	T	TCGA-PK-A5HB-01A-11D-A29I-10	537294	111144784	138105837	90	12081										
LRIG2	9860	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	113666622	113666622	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	agggcctggcagggagagagCcagactgttctgcttcttcc	14	11	2	2	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	LRIG2-229	NM_014813	exon18	c.C3097T	p.P1033S	AGAGAGCCAGACT	.	128	45	112	0	.	1	0	1	0	0	T	113666622	C	T	113666622	3	4	62	1	0	0	0	0	1	0	0	0	8972	739	26	3	3167	3	LRIG2	1	113666622	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	2521838	113666622	135583999	91	12082										
MAGI3	260425	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	114189207	114189207	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gcattatcaggtcaggatccCcaaaattggatccttctgag	9	10	3	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	MAGI3-524	NM_152900	exon12	c.C2098G	p.P700A	GGATCCCCAAAAT	.	210	93	169	0	.	2	0	2	0	0	G	114189207	C	G	114189207	3	3	62	1	0	0	0	0	1	0	0	0	9220	623	22	3	2144	3	MAGI3	1	114189207	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	522585	114189207	135061414	92	12083										
HIPK1	204851	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	114506014	114506014	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	taatctacgtttcagggaagCtgtacaccactaatggtagc	9	9	2	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	HIPK1-361	NM_152696	exon10	c.C2109T	p.S703S	GGGAAGCTGTACA	.	176	70	191	0	.	0	0	0	0	0	T	114506014	C	T	114506014	2	4	62	1	0	0	0	0	0	0	0	1	7137	796	28	3		3	HIPK1	1	114506014	Silent	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	316807	114506014	134744607	93	12084										
WARS2	10352	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr1	119683258	119683258	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	acgcgctttccgcattgagtGcagcgccatcttgagaaggg	13	11	1	2	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	WARS2-90	NM_015836	exon1	c.C10T	p.H4Y	TTGAGTGCAGCGC	.	53	22	32	0	.	6	3	3	0	0	A	119683258	G	A	119683258	3	1	62	1	0	0	0	0	1	0	0	0	17288	1319	46	3	1125	3	WARS2	1	119683258	Missense_Mutation	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	5177244	119683258	129567363	94	12085										
NOTCH2	4853	hgsc.bcm.edu	37	chr1	120611964	120611964	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	tcaccatgcgcgggggccgcGcagcacagccagagcgccag	15	16	1	1	rs11810554	byfrequency	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	NOTCH2-1441	NM_024408	exon1	c.C57G	p.C19W	GGCCGCGCAGCAC	.	12	5	0	0	G|0.680;C|0.320	1	1	0	0	0	C	120611964	G	C	120611964	3	2	62	1	0	0	0	0	1	0	0	0	10577	1079	38	2	7494	2	NOTCH2	1	120611964	Missense_Mutation	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	928706	120611964	128638657	95	12086										
PDE4DIP	9659	broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr1	144854181	144854181	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ttacctctaagttagtccttGccttctttaaaacatcatgt	4	10	3	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PDE4DIP-663	NM_014644	exon43	c.C6983T	p.A2328V	GTCCTTGCCTTCT	.	825	88	662	1	.	5	5	0	0	0	A	144854181	G	A	144854181	3	1	62	1	0	0	0	0	1	0	0	0	11672	1319	46	3	65	3	PDE4DIP	1	144854181	Missense_Mutation	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	24242217	144854181	104396440	96	12087										
PDE4DIP	9659	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	144871772	144871772	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	accactggtgtctcacagcaGccaaggaggagagggccagt	14	11	1	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PDE4DIP-663	NM_014644	exon32	c.C5190A	p.G1730G	ACAGCAGCCAAGG	.	151	38	148	0	.	0	0	0	0	0	T	144871772	G	T	144871772	2	4	62	1	0	0	0	0	0	0	0	1	11672	958	34	3		3	PDE4DIP	1	144871772	Silent	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	17591	144871772	104378849	97	12088										
SEC22B	9554	broad.mit.edu;bcgsc.ca	37	chr1	145115843	145115843	+	RNA	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	caaacttgcagcagtagctgTatttttcatcatgttaatag	7	7	2	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	.	.	.	.	.	TAGCTGTATTTTT	.	282	21	207	0	.	159	159	0	0	0	C	145115843	T	C	145115843	1	2	62	0	1	0	0	0	0	0	0	0	14024	1638	57	4		4	SEC22B	1	145115843	RNA	SNP	T	TCGA-PK-A5HB-01A-11D-A29I-10	244071	145115843	104134778	98	12089										
PIAS3	10401	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	145579296	145579296	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gattattttccccccaacctCtttgtcaaggtcaatgggaa	7	11	3	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PIAS3-658	NM_006099	exon5	c.C633T	p.L211L	CAACCTCTTTGTC	.	52	27	56	0	.	18	12	6	0	0	T	145579296	C	T	145579296	2	4	62	1	0	0	0	0	0	0	0	1	11906	900	32	3		3	PIAS3	1	145579296	Silent	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	463453	145579296	103671325	99	12090										
ANP32E	81611	bcgsc.ca	37	chr1	150195565	150195565	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	agtcatcatcatcttcttcaTccttgaaattcaaatattca	2	10	8	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ANP32E-90	NM_030920	exon6	c.A683T	p.D228V	TCTTCATCCTTGA	.	136	52	154	4	.	0	0	0	0	0	A	150195565	T	A	150195565	3	1	62	1	0	0	0	0	1	0	0	0	709	1449	50	5	131	5	ANP32E	1	150195565	Missense_Mutation	SNP	T	TCGA-PK-A5HB-01A-11D-A29I-10	4616269	150195565	99055056	100	12091										
PRPF3	9129	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	150298336	150298336	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	aggagcagaaaacgagagctAaaggtaggttacaatttact	11	5	0	2	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PRPF3-91	NM_004698	exon3	c.A273G	p.L91L	AGAGCTAAAGGTA	.	176	63	190	0	.	0	0	0	0	0	G	150298336	A	G	150298336	2	3	62	1	0	0	0	0	0	0	0	1	12597	349	13	4		4	PRPF3	1	150298336	Silent	SNP	A	TCGA-PK-A5HB-01A-11D-A29I-10	102771	150298336	98952285	101	12092										
GOLPH3L	55204	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	150636172	150636172	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gatagattcgaccccgcatgGccagctctatcaggatgccc	10	14	2	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	GOLPH3L-91	NM_018178	exon3	c.C251T	p.A84V	CGCATGGCCAGCT	.	130	56	112	0	.	19	9	10	0	0	A	150636172	G	A	150636172	3	1	62	1	0	0	0	0	1	0	0	0	6589	1203	42	3	618	3	GOLPH3L	1	150636172	Missense_Mutation	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	337836	150636172	98614449	102	12093										
GABPB2	126626	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	151065754	151065754	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	caccatcgagatgtcgtagaGttacttatcaaatatggagc	9	8	1	2	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	GABPB2-90	NM_144618	exon4	c.G363T	p.E121D	CGTAGAGTTACTT	.	123	52	105	0	.	15	8	7	0	0	T	151065754	G	T	151065754	3	4	62	1	0	0	0	0	1	0	0	0	6178	1020	36	3	373	3	GABPB2	1	151065754	Missense_Mutation	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	429582	151065754	98184867	103	12094										
RORC	6097	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	151787534	151787534	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	catcggtcaggggtcagctgGctgcctgtgctatagaagct	14	10	2	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	RORC-227	NM_005060	exon5	c.C666G	p.S222R	CAGCTGGCTGCCT	.	306	146	240	0	.	0	0	0	0	0	C	151787534	G	C	151787534	3	2	62	1	0	0	0	0	1	0	0	0	13565	1194	42	3	918	3	RORC	1	151787534	Missense_Mutation	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	721780	151787534	97463087	104	12095										
RORC	6097	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	151789189	151789189	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ttctgcaggcggcagtgctgGcatcggtttcggctggtgcg	17	10	1	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	RORC-227	NM_005060	exon4	c.C249T	p.C83C	GTGCTGGCATCGG	.	188	95	117	0	.	0	0	0	0	0	A	151789189	G	A	151789189	2	1	62	1	0	0	0	0	0	0	0	1	13565	1195	42	3		3	RORC	1	151789189	Silent	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	1655	151789189	97461432	105	12096										
THEM4	117145	hgsc.bcm.edu	37	chr1	151881885	151881885	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ggcgccggcctactggcggcAggcacagagcccccagcgtg	16	16	0	1	rs3748805		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	THEM4-522	NM_053055	exon1	c.T50G	p.L17R	GGCGGCAGGCACA	.	8	8	0	0	T|0.073;G|0.921	8	0	8	0	0	C	151881885	A	C	151881885	3	2	62	1	0	0	0	0	1	0	0	0	15895	188	7	5	696	5	THEM4	1	151881885	Missense_Mutation	SNP	A	TCGA-PK-A5HB-01A-11D-A29I-10	92696	151881885	97368736	106	12097										
IVL	3713	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	152883314	152883314	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gggcagctgaagcacctggaGcagcaggaggggcagctgga	19	9	0	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	IVL-93	NM_005547	exon2	c.G1041A	p.E347E	CCTGGAGCAGCAG	.	248	103	208	1	.	0	0	0	0	0	A	152883314	G	A	152883314	2	1	62	1	0	0	0	0	0	0	0	1	7950	962	34	3		3	IVL	1	152883314	Silent	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	1001429	152883314	96367307	107	12098										
LOR	4014	hgsc.bcm.edu	37	chr1	153233701	153233701	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gggagcgtcaagtactccggAggcggcggctcctccggcgg	18	13	1	0	rs1143390	bycluster;byfrequency;by1000genomes	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	LOR-90	NM_000427	exon2	c.A276C	p.G92G	CTCCGGAGGCGGC	.	6	4	2	0	A|0.594;C|0.406	0	0	0	0	0	C	153233701	A	C	153233701	2	2	62	1	0	0	0	0	0	0	0	1	8924	291	11	5		5	LOR	1	153233701	Silent	SNP	A	TCGA-PK-A5HB-01A-11D-A29I-10	350387	153233701	96016920	108	12099										
UBAP2L	9898	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	154224048	154224048	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gcagtttgggtcagagcctgTcctttctgattatgagtcca	11	9	2	3	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	UBAP2L-91	NM_001127320	exon14	c.T1583C	p.V528A	AGCCTGTCCTTTC	.	72	22	56	1	.	79	45	34	0	0	C	154224048	T	C	154224048	3	2	62	1	0	0	0	0	1	0	0	0	16876	1667	58	4	1633	4	UBAP2L	1	154224048	Missense_Mutation	SNP	T	TCGA-PK-A5HB-01A-11D-A29I-10	990347	154224048	95026573	109	12100										
UBAP2L	9898	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	154224069	154224069	+	Frame_Shift_Del	DEL	C	C	-													0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	cctttctgattatgagtccaCccccaccacgagcgcctctt					novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	UBAP2L-91	NM_001127320	exon14	c.1604delC	p.T535fs	AGTCCACCCCCAC	.	64	14	60	0	.	0	0	0	0	0	-	154224069	C	-	154224069	7	5	62	1	0	1	0	1	0	0	0	0	16876	507	18	0	1654	0	UBAP2L	1	154224069	Frame_Shift_Del	DEL	C	TCGA-PK-A5HB-01A-11D-A29I-10	21	154224069	95026552	110	12101										
FLAD1	80308	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	154962713	154962713	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ttccctgagctggaacagttTctacaggacactatcaagag	9	10	2	2	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	FLAD1-93	NM_025207	exon4	c.T1344A	p.F448L	ACAGTTTCTACAG	.	155	65	98	0	.	51	40	11	0	0	A	154962713	T	A	154962713	3	1	62	1	0	0	0	0	1	0	0	0	5939	1780	62	5	1498	5	FLAD1	1	154962713	Missense_Mutation	SNP	T	TCGA-PK-A5HB-01A-11D-A29I-10	738644	154962713	94287908	111	12102										
ASH1L	55870	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	155452085	155452085	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ctaccaagaagagtagatggCgttgcattaatataatctgc	9	7	1	3	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ASH1L-234	NM_018489	exon3	c.G576A	p.T192T	AGATGGCGTTGCA	.	95	38	74	0	.	10	4	6	0	0	T	155452085	C	T	155452085	2	4	62	1	0	0	0	0	0	0	0	1	1042	755	27	1		1	ASH1L	1	155452085	Silent	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	489372	155452085	93798536	112	12103										
KIAA0907	22889	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	155885735	155885735	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ttattccagtcactggaaagGctggtggaggcatcaactgc	12	9	2	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	KIAA0907-90	NM_014949	exon13	c.C1574T	p.A525V	GGAAAGGCTGGTG	.	56	17	56	1	.	17	11	6	0	0	A	155885735	G	A	155885735	3	1	62	1	0	0	0	0	1	0	0	0	8220	1203	42	3	278	3	KIAA0907	1	155885735	Missense_Mutation	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	433650	155885735	93364886	113	12104										
SH2D2A	9047	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	156779155	156779155	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ctatgggttcatcaggctcaTtgtagataggattggagggc	14	6	3	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SH2D2A-90	NM_001161441	exon7	c.A872G	p.N291S	GGCTCATTGTAGA	.	83	26	73	0	.	0	0	0	0	0	C	156779155	T	C	156779155	3	2	62	1	0	0	0	0	1	0	0	0	14267	1493	52	4	335	4	SH2D2A	1	156779155	Missense_Mutation	SNP	T	TCGA-PK-A5HB-01A-11D-A29I-10	893420	156779155	92471466	114	12105										
SH2D2A	9047	broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr1	156779558	156779558	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	tggcttttgcttccaaagttTgattcttcggtcctcaggga	10	9	2	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SH2D2A-90	NM_001161441	exon6	c.A639G	p.S213S	AAAGTTTGATTCT	.	95	47	51	1	.	0	0	0	0	0	C	156779558	T	C	156779558	2	2	62	1	0	0	0	0	0	0	0	1	14267	1799	63	4		4	SH2D2A	1	156779558	Silent	SNP	T	TCGA-PK-A5HB-01A-11D-A29I-10	403	156779558	92471063	115	12106										
ARHGEF11	9826	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	156926236	156926236	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ttggtcttagggaagaacggTagccacttgtccttgtcagg	13	8	2	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ARHGEF11-233	NM_198236	exon19	c.A1647T	p.L549L	GAACGGTAGCCAC	.	134	66	86	1	.	27	17	10	0	0	A	156926236	T	A	156926236	2	1	62	1	0	0	0	0	0	0	0	1	896	1625	57	5		5	ARHGEF11	1	156926236	Silent	SNP	T	TCGA-PK-A5HB-01A-11D-A29I-10	146678	156926236	92324385	116	12107										
ARHGEF11	9826	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	156954154	156954154	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gccgcacagactgcaccagaAcaatgcgatccccactgact	8	16	0	3	rs151017400	alternate_allele	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ARHGEF11-233	NM_198236	exon3	c.T200A	p.V67D	ACCAGAACAATGC	.	229	92	188	0	A|1.000;C|0.000	16	10	6	0	0	T	156954154	A	T	156954154	3	4	62	1	0	0	0	0	1	0	0	0	896	43	2	5	4644	5	ARHGEF11	1	156954154	Missense_Mutation	SNP	A	TCGA-PK-A5HB-01A-11D-A29I-10	27918	156954154	92296467	117	12108										
CD5L	922	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	157803262	157803262	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	agcacctccagtcgcccagaGcagaggttgtctcctcctac	9	16	1	2	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CD5L-91	NM_005894	exon5	c.C759T	p.C253C	CCCAGAGCAGAGG	.	55	30	52	0	.	0	0	0	0	0	A	157803262	G	A	157803262	2	1	62	1	0	0	0	0	0	0	0	1	3033	963	34	3		3	CD5L	1	157803262	Silent	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	849108	157803262	91447359	118	12109										
CD5L	922	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	157804424	157804424	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	cccggaggctccagcctgtcTggcacacggtataccactgg	12	15	1	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CD5L-91	NM_005894	exon4	c.A491G	p.Q164R	CCTGTCTGGCACA	.	90	32	84	0	.	0	0	0	0	0	C	157804424	T	C	157804424	3	2	62	1	0	0	0	0	1	0	0	0	3033	1580	55	4	564	4	CD5L	1	157804424	Missense_Mutation	SNP	T	TCGA-PK-A5HB-01A-11D-A29I-10	1162	157804424	91446197	119	12110										
KIRREL	55243	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	158064671	158064671	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ccccagctggcactgacacaAccagccagctgtcctacgag	9	17	0	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	KIRREL-91	NM_018240	exon15	c.A2035G	p.T679A	GACACAACCAGCC	.	239	96	173	0	.	6	6	0	0	0	G	158064671	A	G	158064671	3	3	62	1	0	0	0	0	1	0	0	0	8345	43	2	4	2093	4	KIRREL	1	158064671	Missense_Mutation	SNP	A	TCGA-PK-A5HB-01A-11D-A29I-10	260247	158064671	91185950	120	12111										
OR10K2	391107	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	158389762	158389762	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	cacaattttacaaagagctgAtttgaactctttatttctca	4	8	2	3	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	OR10K2-69	NM_001004476	exon1	c.T895A	p.S299T	GAGCTGATTTGAA	.	167	62	133	1	.	0	0	0	0	0	T	158389762	A	T	158389762	3	4	62	1	0	0	0	0	1	0	0	0	10943	333	12	5	45	5	OR10K2	1	158389762	Missense_Mutation	SNP	A	TCGA-PK-A5HB-01A-11D-A29I-10	325091	158389762	90860859	121	12112										
OR10Z1	128368	hgsc.bcm.edu;bcgsc.ca	37	chr1	158576487	158576487	+	Frame_Shift_Del	DEL	G	G	-													0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gaatgctctctggcctggctGggggggaccaggctatctcc					novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	OR10Z1-70	NM_001004478	exon1	c.259delG	p.G87fs	CTGGCTGGGGGGG	.	135	54	104	1	.	0	0	0	0	0	-	158576487	G	-	158576487	7	5	62	1	0	1	0	1	0	0	0	0	10952	1348	47	0	261	0	OR10Z1	1	158576487	Frame_Shift_Del	DEL	G	TCGA-PK-A5HB-01A-11D-A29I-10	186725	158576487	90674134	122	12113										
IGSF9	57549	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	159898610	159898610	+	Frame_Shift_Del	DEL	C	C	-													0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	tggggggccgccacagtgggCcccatcacaaagcgcccgtc					novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	IGSF9-156	NM_001135050	exon19	c.2568delG	p.G856fs	AGTGGGCCCCATC	.	37	12	36	0	.	0	0	0	0	0	-	159898610	C	-	159898610	7	5	62	1	0	1	0	1	0	0	0	0	7626	726	26	0	983	0	IGSF9	1	159898610	Frame_Shift_Del	DEL	C	TCGA-PK-A5HB-01A-11D-A29I-10	1322123	159898610	89352011	123	12114										
KCNJ10	3766	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr1	160011970	160011970	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	attcaagggagaagaggaagGctccagtgagtgtgtgcacc	15	7	1	3	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	KCNJ10-91	NM_002241	exon2	c.C353T	p.A118V	AGGAAGGCTCCAG	.	134	55	96	0	.	0	0	0	0	0	A	160011970	G	A	160011970	3	1	62	1	0	0	0	0	1	0	0	0	8065	1203	42	3	790	3	KCNJ10	1	160011970	Missense_Mutation	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	113360	160011970	89238651	124	12115										
F11R	50848	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	160969185	160969185	+	Splice_Site	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ccaggacagcacctcactcaCcctttctttgttcctgaaag	6	15	3	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	F11R-92	NM_016946	exon9	c.815+1G>A	.	CACTCACCCTTTC	.	195	71	196	0	.	0	0	0	0	0	T	160969185	C	T	160969185	5	4	62	1	0	0	0	0	0	0	1	0	5351	521	18	3	95	3	F11R	1	160969185	Splice_Site	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	957215	160969185	88281436	125	12116										
USP21	27005	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	161130942	161130942	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	tggaccccctaccctgttcaGcatacggacagagccccctg	9	17	1	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	USP21-660	NM_001014443	exon3	c.G512A	p.S171N	TGTTCAGCATACG	.	91	43	64	0	.	25	10	15	0	0	A	161130942	G	A	161130942	3	1	62	1	0	0	0	0	1	0	0	0	17091	971	34	3	514	3	USP21	1	161130942	Missense_Mutation	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	161757	161130942	88119679	126	12117										
NDUFS2	4720	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	161173239	161173239	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ctccccagaggtgttcggcaGtggcagccagatgtggaatg	15	10	0	2	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	NDUFS2-91	NM_001166159	exon2	c.G108T	p.Q36H	TCGGCAGTGGCAG	.	148	10	106	0	.	114	106	8	0	0	T	161173239	G	T	161173239	3	4	62	1	0	0	0	0	1	0	0	0	10321	1020	36	3	114	3	NDUFS2	1	161173239	Missense_Mutation	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	42297	161173239	88077382	127	12118										
FCGR3A	2214	broad.mit.edu;bcgsc.ca	37	chr1	161514695	161514695	+	Missense_Mutation	SNP	G	G	A													0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ccagctgtgacacctcaggtGaatagggtcttcctccttga					novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	FCGR3A-91	NM_000569	exon4	c.C481T	p.H161Y	TCAGGTGAATAGG	.	239	85	207	1	.	9	9	0	0	0	A	161514695	G	A	161514695	3	1	62	1	0	0	0	0	1	0	0	0	5803	1290	45	3	399	3	FCGR3A	1	161514695	Missense_Mutation	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	341456	161514695	87735926	128	12119	137	2								
FCGR3A	2214	broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr1	161514700	161514700	+	Missense_Mutation	SNP	G	G	A													0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	tgtgacacctcaggtgaataGggtcttcctccttgaacacc					novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	FCGR3A-91	NM_000569	exon4	c.C476T	p.P159L	TGAATAGGGTCTT	.	230	81	197	1	.	9	9	0	0	0	A	161514700	G	A	161514700	3	1	62	1	0	0	0	0	1	0	0	0	5803	1000	35	3	404	3	FCGR3A	1	161514700	Missense_Mutation	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	5	161514700	87735921	129	12120	137	2								
UHMK1	127933	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr1	162467903	162467903	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	cggctcctccgcctcggtgtAtcgggttcgctgctgcggca	14	15	0	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	UHMK1-358	NM_144624	exon1	c.A113T	p.Y38F	CGGTGTATCGGGT	.	194	72	58	0	.	21	8	13	0	0	T	162467903	A	T	162467903	3	4	62	1	0	0	0	0	1	0	0	0	17004	449	16	5	165	5	UHMK1	1	162467903	Missense_Mutation	SNP	A	TCGA-PK-A5HB-01A-11D-A29I-10	953203	162467903	86782718	130	12121										
FAM78B	149297	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	166135378	166135378	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	cgcaggacgatgggcgaggtCtcctcgatgcgcgtggggca	18	11	1	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	FAM78B-91	NM_001017961	exon1	c.G108A	p.E36E	CGAGGTCTCCTCG	.	195	76	135	0	.	2	1	1	0	0	T	166135378	C	T	166135378	2	4	62	1	0	0	0	0	0	0	0	1	5646	912	32	3		3	FAM78B	1	166135378	Silent	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	3667475	166135378	83115243	131	12122										
SELP	6403	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	169578907	169578907	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gcttccgtggacaggactctCcagcggctcacacgaaatag	11	13	2	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SELP-94	NM_003005	exon8	c.G1168C	p.E390Q	GACTCTCCAGCGG	.	102	50	74	0	.	0	0	0	0	0	G	169578907	C	G	169578907	3	3	62	1	0	0	0	0	1	0	0	0	14054	864	30	3	1360	3	SELP	1	169578907	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	3443529	169578907	79671714	132	12123										
FMO2	2327	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	171168622	171168622	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ttgagctgagtaagaatgctGctcaggtgtgatgctctctg	13	7	2	4	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	FMO2-91	NM_001460	exon5	c.G622A	p.A208T	AATGCTGCTCAGG	.	241	108	196	1	.	0	0	0	0	0	A	171168622	G	A	171168622	3	1	62	1	0	0	0	0	1	0	0	0	5974	1319	46	3	636	3	FMO2	1	171168622	Missense_Mutation	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	1589715	171168622	78081999	133	12124										
ANKRD45	339416	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	173616087	173616087	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	agcttctatatcaacatccaGttctaccagtgctttcaaag	5	11	4	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ANKRD45-90	NM_198493	exon3	c.C394G	p.L132V	CATCCAGTTCTAC	.	139	56	114	1	.	0	0	0	0	0	C	173616087	G	C	173616087	3	2	62	1	0	0	0	0	1	0	0	0	673	1020	36	3	422	3	ANKRD45	1	173616087	Missense_Mutation	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	2447465	173616087	75634534	134	12125										
TOR3A	64222	hgsc.bcm.edu	37	chr1	179051300	179051300	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ggcgccagctttggctctttTtcctgctgctgctcccgggc	12	15	1	0	rs2296377	byfrequency	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TOR3A-90	NM_022371	exon1	c.T37C	p.F13L	CTCTTTTTCCTGC	.	8	8	0	0	T|0.229;C|0.771	2	0	2	0	0	C	179051300	T	C	179051300	3	2	62	1	0	0	0	0	1	0	0	0	16414	1841	64	4	39	4	TOR3A	1	179051300	Missense_Mutation	SNP	T	TCGA-PK-A5HB-01A-11D-A29I-10	5435213	179051300	70199321	135	12126										
ACBD6	84320	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	180471390	180471390	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	atggcccccgcgggcaggaaTgatgaagccatgtctccttg	13	12	1	2	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ACBD6-91	NM_032360	exon1	c.A12G	p.S4S	CAGGAATGATGAA	.	274	132	243	1	.	54	29	25	0	0	C	180471390	T	C	180471390	2	2	62	1	0	0	0	0	0	0	0	1	126	1451	51	4		4	ACBD6	1	180471390	Silent	SNP	T	TCGA-PK-A5HB-01A-11D-A29I-10	1420090	180471390	68779231	136	12127										
KIAA1614	57710	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	180904988	180904988	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	aggcagcagcccgcgactgcGactgcggggctccaggcctc	15	16	0	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	KIAA1614-26	NM_020950	exon5	c.G1943A	p.R648Q	GACTGCGACTGCG	.	158	70	56	0	.	2	2	0	0	0	A	180904988	G	A	180904988	3	1	62	1	0	0	0	0	1	0	0	0	8269	1058	37	1	1961	1	KIAA1614	1	180904988	Missense_Mutation	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	433598	180904988	68345633	137	12128										
CACNA1E	777	broad.mit.edu;bcgsc.ca	37	chr1	181702837	181702837	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	accgagagcaccagcgtcacCgtcgccatccccgacgtgga	11	17	1	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CACNA1E-95	NM_000721	exon21	c.C3213T	p.T1071T	CGTCACCGTCGCC	.	534	24	400	0	.	0	0	0	0	0	T	181702837	C	T	181702837	2	4	62	1	0	0	0	0	0	0	0	1	2548	639	23	1		1	CACNA1E	1	181702837	Silent	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	797849	181702837	67547784	138	12129										
CACNA1E	777	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	181762806	181762806	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	tgtgtttatttccaggagccAgaggttagtgaattaaaaag	11	4	0	2	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CACNA1E-95	NM_001205293	exon45	c.A5904C	p.P1968P	GGAGCCAGAGGTT	.	150	55	120	0	.	0	0	0	0	0	C	181762806	A	C	181762806	2	2	62	1	0	0	0	0	0	0	0	1	2548	203	7	5		5	CACNA1E	1	181762806	Silent	SNP	A	TCGA-PK-A5HB-01A-11D-A29I-10	59969	181762806	67487815	139	12130										
ZNF648	127665	hgsc.bcm.edu	37	chr1	182026352	182026352	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gcgtctccgcggggctcagcGgcttgctgggcttctgaaag	16	12	3	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ZNF648-91	NM_001009992	exon2	c.C794G	p.P265R	CTCAGCGGCTTGC	.	17	9	0	0	.	0	0	0	0	0	C	182026352	G	C	182026352	3	2	62	1	0	0	0	0	1	0	0	0	18100	1116	39	2	916	2	ZNF648	1	182026352	Missense_Mutation	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	263546	182026352	67224269	140	12131										
ZNF648	127665	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	182026897	182026897	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	atgcccccagcactggaggaGtcagagaatttctcttcctc	9	13	2	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ZNF648-91	NM_001009992	exon2	c.C249G	p.D83E	GGAGGAGTCAGAG	.	148	77	117	0	.	0	0	0	0	0	C	182026897	G	C	182026897	3	2	62	1	0	0	0	0	1	0	0	0	18100	1020	36	3	1461	3	ZNF648	1	182026897	Missense_Mutation	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	545	182026897	67223724	141	12132										
PLA2G4A	5321	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	186908147	186908147	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gttttctgtataggtatatgTcaaccttgtattctcaccct	6	9	3	0	rs201251994	alternate_allele	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PLA2G4A-721	NM_024420	exon9	c.T703C	p.S235P	TATATGTCAACCT	.	61	29	70	0	T|0.999;A|0.001	0	0	0	0	0	C	186908147	T	C	186908147	3	2	62	1	0	0	0	0	1	0	0	0	12030	1667	58	4	733	4	PLA2G4A	1	186908147	Missense_Mutation	SNP	T	TCGA-PK-A5HB-01A-11D-A29I-10	4881250	186908147	62342474	142	12133										
B3GALT2	8707	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	193149518	193149518	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gttgtaaatggttccagtatTttatcagttcactaggctgg	10	6	2	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	B3GALT2-91	NM_003783	exon2	c.A1175G	p.K392R	CAGTATTTTATCA	.	140	65	139	0	.	0	0	0	0	0	C	193149518	T	C	193149518	3	2	62	1	0	0	0	0	1	0	0	0	1249	1841	64	4	97	4	B3GALT2	1	193149518	Missense_Mutation	SNP	T	TCGA-PK-A5HB-01A-11D-A29I-10	6241371	193149518	56101103	143	12134										
KIF21B	23046	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	200974545	200974545	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	tggctgtggtgcgggacaggGccccctgcttcaggcactgg	17	12	1	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	KIF21B-96	NM_017596	exon5	c.C623T	p.A208V	GACAGGGCCCCCT	.	155	73	117	2	.	2	2	0	0	0	A	200974545	G	A	200974545	3	1	62	1	0	0	0	0	1	0	0	0	8310	1203	42	3	4371	3	KIF21B	1	200974545	Missense_Mutation	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	7825027	200974545	48276076	144	12135										
FMOD	2331	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	203317354	203317354	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	tcttcatactgggcctgggaGagggagaagagccctgccag	15	10	2	3	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	FMOD-137	NM_002023	exon2	c.C45G	p.L15L	CTGGGAGAGGGAG	.	200	90	142	1	.	0	0	0	0	0	C	203317354	G	C	203317354	2	2	62	1	0	0	0	0	0	0	0	1	5978	929	33	3		3	FMOD	1	203317354	Silent	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	2342809	203317354	45933267	145	12136										
SNRPE	6635	bcgsc.ca	37	chr1	203832838	203832839	+	Frame_Shift_Ins	INS	-	-	C													0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	agcaagtgaatatgcggataINSgaaggctgtatcattgtgag					novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SNRPE-514	NM_003094	exon3	c.129_130insC	p.I43fs	GCGGATAGAAGGC	.	321	139	316	2	.	0	0	0	0	0	C	203832839	-	C	203832838	7	5	62	1	0	1	1	0	0	0	0	0	14902	410	15	0	139	0	SNRPE	1	203832838	Frame_Shift_Ins	INS	-	TCGA-PK-A5HB-01A-11D-A29I-10	515484	203832838	45417783	146	12137	138	2								
SNRPE	6635	hgsc.bcm.edu;bcgsc.ca	37	chr1	203832839	203832839	+	Frame_Shift_Del	DEL	G	G	-													0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	agcaagtgaatatgcggataGaaggctgtatcattgtgagt					novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SNRPE-514	NM_003094	exon3	c.130delG	p.E44fs	CGGATAGAAGGCT	.	321	0	316	0	.	0	0	0	0	0	-	203832839	G	-	203832839	7	5	62	1	0	1	0	1	0	0	0	0	14902	943	33	0	140	0	SNRPE	1	203832839	Frame_Shift_Del	DEL	G	TCGA-PK-A5HB-01A-11D-A29I-10	1	203832839	45417782	147	12138	138	2								
RCOR3	55758	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	211462519	211462519	+	Splice_Site	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	attctgcttttattctcttaGggtaatactgaacaacctgt	6	8	2	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	RCOR3-91	NM_001136224	exon8	c.721-1G>A	.	CTCTTAGGGTAAT	.	204	81	191	0	.	0	0	0	0	0	A	211462519	G	A	211462519	5	1	62	1	0	0	0	0	0	0	1	0	13219	1014	35	3	750	3	RCOR3	1	211462519	Splice_Site	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	7629680	211462519	37788102	148	12139										
VASH2	79805	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	213125126	213125126	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ccctaaggggggagaaatggTgggcgccatcaggaacgccg	17	10	1	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	VASH2-90	NM_024749	exon2	c.T242C	p.V81A	AAATGGTGGGCGC	.	65	30	66	0	.	0	0	0	0	0	C	213125126	T	C	213125126	3	2	62	1	0	0	0	0	1	0	0	0	17164	1696	59	4	244	4	VASH2	1	213125126	Missense_Mutation	SNP	T	TCGA-PK-A5HB-01A-11D-A29I-10	1662607	213125126	36125495	149	12140										
RPS6KC1	26750	broad.mit.edu;bcgsc.ca	37	chr1	213277826	213277826	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	tgaaactgttatcgaagagaGaagacaatgtgctgaagacc	11	6	0	6	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	RPS6KC1-417	NM_012424	exon4	c.G293T	p.R98I	AAGAGAGAAGACA	.	89	42	99	2	.	10	8	2	0	0	T	213277826	G	T	213277826	3	4	62	1	0	0	0	0	1	0	0	0	13693	942	33	3	307	3	RPS6KC1	1	213277826	Missense_Mutation	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	152700	213277826	35972795	150	12141										
KCTD3	51133	hgsc.bcm.edu	37	chr1	215741053	215741053	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	cgggagggcactgcggcagcTtccccgcggcggcggccggc	19	16	0	0	rs2275768	byfrequency	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	KCTD3-93	NM_016121	exon1	c.T25G	p.F9V	GGCAGCTTCCCCG	.	12	12	0	0	T|0.721;G|0.279	19	0	19	0	0	G	215741053	T	G	215741053	3	3	62	1	0	0	0	0	1	0	0	0	8131	1609	56	5	27	5	KCTD3	1	215741053	Missense_Mutation	SNP	T	TCGA-PK-A5HB-01A-11D-A29I-10	2463227	215741053	33509568	151	12142										
USH2A	7399	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	216246596	216246596	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gacacagatgccaagttaacGacagcaccccgtgtaaattt	8	11	0	1	rs138416665		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	USH2A-115	NM_206933	exon28	c.C5619T	p.V1873V	GTTAACGACAGCA	.	224	94	228	3	G|1.000;A|0.000	0	0	0	0	0	A	216246596	G	A	216246596	2	1	62	1	0	0	0	0	0	0	0	1	17074	1045	37	1		1	USH2A	1	216246596	Silent	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	505543	216246596	33004025	152	12143										
EPRS	2058	broad.mit.edu	37	chr1	220142206	220142206	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ggttcttgccacagacacatTtggctccaggctgcagttca	10	12	2	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	EPRS-92	NM_004446	exon32	c.A4481G	p.K1494R	ACACATTTGGCTC	.	246	6	182	0	.	347	346	1	0	0	C	220142206	T	C	220142206	3	2	62	1	0	0	0	0	1	0	0	0	5204	1841	64	4	61	4	EPRS	1	220142206	Missense_Mutation	SNP	T	TCGA-PK-A5HB-01A-11D-A29I-10	3895610	220142206	29108415	153	12144										
TAF1A	9015	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	222737423	222737423	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gattttctaagtaatgtatgGaattccaacatcaatttatg	6	5	2	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TAF1A-44	NM_005681	exon8	c.C939T	p.F313F	TGTATGGAATTCC	.	253	85	263	0	.	4	2	2	0	0	A	222737423	G	A	222737423	2	1	62	1	0	0	0	0	0	0	0	1	15556	1165	41	3		3	TAF1A	1	222737423	Silent	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	2595217	222737423	26513198	154	12145										
C1orf65	164127	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	223568189	223568189	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ccctggaacaaagtttccagCggtcccaggagatacaccag	10	13	0	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	C1orf65-91	NM_152610	exon1	c.C1372T	p.R458W	TTCCAGCGGTCCC	.	268	110	193	0	.	0	0	0	0	0	T	223568189	C	T	223568189	3	4	62	1	0	0	0	0	1	0	0	0	2061	759	27	1	1374	1	C1orf65	1	223568189	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	830766	223568189	25682432	155	12146										
CAPN2	824	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	223947169	223947169	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	atccgggtcttttctgaaaaGaaagctgactaccagtaggc	10	9	2	3	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CAPN2-523	NM_001748	exon12	c.G1515C	p.K505N	TGAAAAGAAAGCT	.	61	22	42	0	.	5	2	3	0	0	C	223947169	G	C	223947169	3	2	62	1	0	0	0	0	1	0	0	0	2633	933	33	3	1568	3	CAPN2	1	223947169	Missense_Mutation	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	378980	223947169	25303452	156	12147										
PARP1	142	broad.mit.edu;bcgsc.ca	37	chr1	226573266	226573266	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	tgaccatacacttggtccagGcagtgacgtccccagtgcag	11	13	0	2	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PARP1-727	NM_001618	exon7	c.C950T	p.A317V	GTCCAGGCAGTGA	.	310	15	173	0	.	64	60	4	0	0	A	226573266	G	A	226573266	3	1	62	1	0	0	0	0	1	0	0	0	11483	1203	42	3	2162	3	PARP1	1	226573266	Missense_Mutation	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	2626097	226573266	22677355	157	12148										
OBSCN	84033	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	228475560	228475560	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	cagcctacgccaggagggtgCcatgctggagctggtggtcc	16	12	0	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	OBSCN-403	NM_001271223	exon41	c.C10997T	p.A3666V	AGGGTGCCATGCT	.	214	16	180	0	.	1	1	0	0	0	T	228475560	C	T	228475560	3	4	62	1	0	0	0	0	1	0	0	0	10841	739	26	3	9848	3	OBSCN	1	228475560	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	1902294	228475560	20775061	158	12149										
CAPN9	10753	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	230921739	230921739	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ccctacagggatatggatggAaatgtagacattgaccttcc	10	9	0	2	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CAPN9-91	NM_006615	exon12	c.A1494T	p.G498G	GGATGGAAATGTA	.	275	121	200	0	.	0	0	0	0	0	T	230921739	A	T	230921739	2	4	62	1	0	0	0	0	0	0	0	1	2638	233	9	5		5	CAPN9	1	230921739	Silent	SNP	A	TCGA-PK-A5HB-01A-11D-A29I-10	2446179	230921739	18328882	159	12150										
TTC13	79573	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	231079568	231079568	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	tcacttctgctcgctgctcaAatacctctggacgatctggt	8	13	5	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TTC13-92	NM_024525	exon6	c.T656C	p.F219S	TGCTCAAATACCT	.	43	20	50	0	.	8	5	3	0	0	G	231079568	A	G	231079568	3	3	62	1	0	0	0	0	1	0	0	0	16718	14	1	4	1998	4	TTC13	1	231079568	Missense_Mutation	SNP	A	TCGA-PK-A5HB-01A-11D-A29I-10	157829	231079568	18171053	160	12151										
TRIM67	440730	ucsc.edu;bcgsc.ca	37	chr1	231349649	231349649	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ccttcttcatcaacgggcagCagcagggccccacagccttc	9	17	3	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TRIM67-229	NM_001004342	exon9	c.C2212T	p.Q738X	GGGCAGCAGCAGG	.	473	241	298	2	.	0	0	0	0	0	T	231349649	C	T	231349649	4	4	62	1	0	0	0	0	0	1	0	0	16578	711	25	3	2246	3	TRIM67	1	231349649	Nonsense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	270081	231349649	17900972	161	12152										
GNPAT	8443	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	231396359	231396359	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	tggagccattcggttttgtgCcttcaccctgagcaaagtat	10	10	1	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	GNPAT-156	NM_014236	exon3	c.C368T	p.A123V	TTTGTGCCTTCAC	.	53	22	51	0	.	21	10	11	0	0	T	231396359	C	T	231396359	3	4	62	1	0	0	0	0	1	0	0	0	6561	739	26	3	378	3	GNPAT	1	231396359	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	46710	231396359	17854262	162	12153										
EXOC8	149371	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	231471391	231471391	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	cagatcttggagttgcttggCaggtttccccacaccttctt	9	12	2	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	EXOC8-91	NM_175876	exon1	c.G2101A	p.A701T	GCTTGGCAGGTTT	.	139	62	119	0	.	16	10	6	0	0	T	231471391	C	T	231471391	3	4	62	1	0	0	0	0	1	0	0	0	5324	710	25	3	80	3	EXOC8	1	231471391	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	75032	231471391	17779230	163	12154										
FMN2	56776	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	240255872	240255872	+	Frame_Shift_Del	DEL	G	G	-													0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ggcctgccgaggctagggtcGggggccggccgatcgccgag					novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	FMN2-145	NM_020066	exon1	c.463delG	p.G155fs	AGGGTCGGGGGCC	.	150	68	128	0	.	0	0	0	0	0	-	240255872	G	-	240255872	7	5	62	1	0	1	0	1	0	0	0	0	5969	1116	39	0	465	0	FMN2	1	240255872	Frame_Shift_Del	DEL	G	TCGA-PK-A5HB-01A-11D-A29I-10	8784481	240255872	8994749	164	12155										
OR14I1	401994	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	248844883	248844883	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	agcatgatgacaatgagctgGggggagcaggtggagaaggc	19	5	0	4	rs201585486	alternate_allele	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	OR14I1-46	NM_001004734	exon1	c.C723T	p.P241P	GAGCTGGGGGGAG	.	141	86	118	0	G|0.999;C|0.001	0	0	0	0	0	A	248844883	G	A	248844883	2	1	62	1	0	0	0	0	0	0	0	1	10976	1219	43	3		3	OR14I1	1	248844883	Silent	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	8589011	248844883	405738	165	12156										
SH3BP5L	80851	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr1	249106288	249106288	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	aggctcagcagactcagggtAtcggtgtcgggggcggggcc	19	10	2	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SH3BP5L-90	NM_030645	exon7	c.T993C	p.D331D	CAGGGTATCGGTG	.	119	50	39	0	.	20	8	12	0	0	G	249106288	A	G	249106288	2	3	62	1	0	0	0	0	0	0	0	1	14283	446	16	4		4	SH3BP5L	1	249106288	Silent	SNP	A	TCGA-PK-A5HB-01A-11D-A29I-10	261405	249106288	144333	166	12157										
MYT1L	23040	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	1983497	1983497	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	agggaagcgcggacatacctCgaacccctttggaccgcgtg	13	13	0	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	MYT1L-95	NM_015025	exon6	c.G53A	p.R18Q	ATACCTCGAACCC	.	108	61	63	0	.	0	0	0	0	0	T	1983497	C	T	1983497	3	4	62	1	0	0	0	0	1	0	0	0	10135	884	31	1	3581	1	MYT1L	2	1983497	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10		1983497	241215876	167	12158										
TSSC1	7260	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	3193197	3193197	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ggcaaacagccacgggtcagCcgaggaccagtccacggcat	13	14	1	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TSSC1-90	NM_003310	exon9	c.G1072A	p.A358T	GGTCAGCCGAGGA	.	289	140	217	0	.	46	18	28	0	0	T	3193197	C	T	3193197	3	4	62	1	0	0	0	0	1	0	0	0	16704	739	26	3	95	3	TSSC1	2	3193197	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	1209700	3193197	240006176	168	12159										
CMPK2	129607	hgsc.bcm.edu	37	chr2	7005369	7005369	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	tgcgggcgtggtgcctcctgAcaggcgcccagcagctcgag	16	14	0	1	rs11678810		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CMPK2-68	NM_001256478	exon1	c.T459C	p.C153C	CTCCTGACAGGCG	.	7	7	0	0	A|0.003;G|0.997	1	0	1	0	0	G	7005369	A	G	7005369	2	3	62	1	0	0	0	0	0	0	0	1	3587	273	10	4		4	CMPK2	2	7005369	Silent	SNP	A	TCGA-PK-A5HB-01A-11D-A29I-10	3812172	7005369	236194004	169	12160										
NTSR2	23620	hgsc.bcm.edu	37	chr2	11810064	11810064	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	tggtggcgcaggcgccccgcGcgcccggcccgcgccttcag	16	19	1	0	rs11556847		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	NTSR2-946	NM_012344	exon1	c.C192A	p.R64R	CCCCGCGCGCCCG	.	11	4	0	0	G|1.000;|0.000	0	0	0	0	0	T	11810064	G	T	11810064	2	4	62	1	0	0	0	0	0	0	0	1	10740	1074	38	2		2	NTSR2	2	11810064	Silent	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	4804695	11810064	231389309	170	12161										
NBAS	51594	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	15694258	15694258	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	atcagggagcaaaaaaggtgCcgggctgaaatcacaacaca	11	9	2	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	NBAS-94	NM_015909	exon4	c.G214A	p.A72T	AAGGTGCCGGGCT	.	127	60	100	1	.	0	0	0	0	0	T	15694258	C	T	15694258	3	4	62	1	0	0	0	0	1	0	0	0	10214	739	26	3	7097	3	NBAS	2	15694258	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	3884194	15694258	227505115	171	12162										
SMC6	79677	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	17906608	17906608	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	tccttcatctgttcaagttgCgttgctttcatgaagaacta	7	9	4	2	rs144198428	byfrequency	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SMC6-292	NM_001142286	exon9	c.G642A	p.T214T	AAGTTGCGTTGCT	.	32	6	31	0	C|0.999;T|0.001	14	5	9	0	0	T	17906608	C	T	17906608	2	4	62	1	0	0	0	0	0	0	0	1	14822	755	27	1		1	SMC6	2	17906608	Silent	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	2212350	17906608	225292765	172	12163										
WDR35	57539	ucsc.edu;bcgsc.ca	37	chr2	20174293	20174293	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	aagcaaacagcaaggcaaggGcaatcaggctccacgtagcc	11	12	1	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	WDR35-91	NM_020779	exon7	c.C672A	p.C224X	GCAAGGGCAATCA	.	306	127	297	3	.	1	1	0	0	0	T	20174293	G	T	20174293	4	4	62	1	0	0	0	0	0	1	0	0	17327	1195	42	3	2961	3	WDR35	2	20174293	Nonsense_Mutation	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	2267685	20174293	223025080	173	12164										
APOB	338	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	21233246	21233246	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	atagtttttcattaaagttgAttttggcatcatctaatgca	6	5	3	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	APOB-175	NM_000384	exon26	c.T6494A	p.I2165N	AAGTTGATTTTGG	.	37	15	39	0	.	0	0	0	0	0	T	21233246	A	T	21233246	3	4	62	1	0	0	0	0	1	0	0	0	785	333	12	5	7213	5	APOB	2	21233246	Missense_Mutation	SNP	A	TCGA-PK-A5HB-01A-11D-A29I-10	1058953	21233246	221966127	174	12165										
NCOA1	8648	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	24929918	24929918	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gcatgacaagtagtgcctgtAataataataaccgatcttat	7	7	1	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	NCOA1-228	NM_147223	exon11	c.A1579G	p.N527D	GCCTGTAATAATA	.	172	84	162	2	.	22	11	11	0	0	G	24929918	A	G	24929918	3	3	62	1	0	0	0	0	1	0	0	0	10257	362	13	4	1613	4	NCOA1	2	24929918	Missense_Mutation	SNP	A	TCGA-PK-A5HB-01A-11D-A29I-10	3696672	24929918	218269455	175	12166										
OTOF	9381	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	26707488	26707488	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gacaggatggcccacttgtgAtggaactggtgctctgcaat	13	9	1	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	OTOF-135	NM_194248	exon12	c.T1059A	p.H353Q	CTTGTGATGGAAC	.	248	103	168	2	.	0	0	0	0	0	T	26707488	A	T	26707488	3	4	62	1	0	0	0	0	1	0	0	0	11332	330	12	5	5403	5	OTOF	2	26707488	Missense_Mutation	SNP	A	TCGA-PK-A5HB-01A-11D-A29I-10	1777570	26707488	216491885	176	12167										
DPYSL5	56896	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	27121385	27121385	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	aacatgcttgccaactcagcCagcgtgaggatcctcatcaa	8	13	3	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	DPYSL5-92	NM_001253724	exon2	c.C18T	p.A6A	CTCAGCCAGCGTG	.	513	241	395	1	.	0	0	0	0	0	T	27121385	C	T	27121385	2	4	62	1	0	0	0	0	0	0	0	1	4761	581	21	3		3	DPYSL5	2	27121385	Silent	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	413897	27121385	216077988	177	12168										
SLC5A6	8884	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	27428302	27428302	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	tggctgaccccacaatgataActgccagctgcccgaggaac	10	14	0	2	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SLC5A6-92	NM_021095	exon7	c.T650A	p.V217D	ATGATAACTGCCA	.	341	135	240	1	.	0	0	0	0	0	T	27428302	A	T	27428302	3	4	62	1	0	0	0	0	1	0	0	0	14704	43	2	5	1301	5	SLC5A6	2	27428302	Missense_Mutation	SNP	A	TCGA-PK-A5HB-01A-11D-A29I-10	306917	27428302	215771071	178	12169										
CAD	790	hgsc.bcm.edu;bcgsc.ca	37	chr2	27455435	27455435	+	Frame_Shift_Del	DEL	G	G	-													0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ttacctatacctaacgtattGgggcaccacccatgacctca					novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CAD-295	NM_004341	exon18	c.2765delG	p.W922fs	CGTATTGGGGCAC	.	307	129	214	0	.	0	0	0	0	0	-	27455435	G	-	27455435	7	5	62	1	0	1	0	1	0	0	0	0	2571	1357	47	0	2835	0	CAD	2	27455435	Frame_Shift_Del	DEL	G	TCGA-PK-A5HB-01A-11D-A29I-10	27133	27455435	215743938	179	12170										
PLB1	151056	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr2	28719029	28719029	+	Frame_Shift_Del	DEL	G	G	-													0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ctggagctgctgctgcttctGgggcaaggtaagcgtgcctt					novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PLB1-141	NM_001170585	exon1	c.48delG	p.L16fs	GCTTCTGGGGCAA	.	109	50	77	0	.	0	0	0	0	0	-	28719029	G	-	28719029	7	5	62	1	0	1	0	1	0	0	0	0	12053	1335	47	0	50	0	PLB1	2	28719029	Frame_Shift_Del	DEL	G	TCGA-PK-A5HB-01A-11D-A29I-10	1263594	28719029	214480344	180	12171										
SLC30A6	55676	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	32417996	32417996	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	atttcttatagtgcagaacgCtttttggaacagcccgagat	9	8	1	2	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SLC30A6-90	NM_001193513	exon8	c.C495T	p.R165R	AGAACGCTTTTTG	.	54	23	75	1	.	0	0	0	0	0	T	32417996	C	T	32417996	2	4	62	1	0	0	0	0	0	0	0	1	14594	784	28	3		3	SLC30A6	2	32417996	Silent	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	3698967	32417996	210781377	181	12172										
CRIM1	51232	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	36740805	36740805	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	cacgatgggtgccgggaatgCtactgtctcaatggacggga	15	9	1	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CRIM1-118	NM_016441	exon11	c.C1887T	p.C629C	GGAATGCTACTGT	.	200	87	209	2	.	13	12	1	0	0	T	36740805	C	T	36740805	2	4	62	1	0	0	0	0	0	0	0	1	3879	805	28	3		3	CRIM1	2	36740805	Silent	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	4322809	36740805	206458568	182	12173										
STRN	6801	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	37096725	37096725	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	tggggctgttttctgtaaatTccacatttttaatgtgtgat	9	5	1	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	STRN-91	NM_003162	exon11	c.A1471T	p.N491Y	GTAAATTCCACAT	.	95	44	72	0	.	17	9	8	0	0	A	37096725	T	A	37096725	3	1	62	1	0	0	0	0	1	0	0	0	15366	1783	62	5	903	5	STRN	2	37096725	Missense_Mutation	SNP	T	TCGA-PK-A5HB-01A-11D-A29I-10	355920	37096725	206102648	183	12174										
MAP4K3	8491	hgsc.bcm.edu;bcgsc.ca	37	chr2	39487811	39487812	+	Frame_Shift_Ins	INS	-	-	A													0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	caaatcgaaccacttggttgINSaagtctctacctctactgac					novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	MAP4K3-550	NM_003618	exon29	c.2244_2245insT	p.F748fs	TTGGTTGAAGTCT	.	102	43	86	1	.	0	0	0	0	0	A	39487812	-	A	39487811	7	5	62	1	0	1	1	0	0	0	0	0	9289	1281	45	0	464	0	MAP4K3	2	39487811	Frame_Shift_Ins	INS	-	TCGA-PK-A5HB-01A-11D-A29I-10	2391086	39487811	203711562	184	12175										
ABCG5	64240	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr2	44047175	44047175	+	Frame_Shift_Del	DEL	G	G	-													0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	tagaaattcaccaattaagtGgggggccaagagagcagcag					novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ABCG5-92	NM_022436	exon11	c.1528delC	p.H510fs	TTAAGTGGGGGGC	.	243	107	233	0	.	0	0	0	0	0	-	44047175	G	-	44047175	7	5	62	1	0	1	0	1	0	0	0	0	71	1348	47	0	439	0	ABCG5	2	44047175	Frame_Shift_Del	DEL	G	TCGA-PK-A5HB-01A-11D-A29I-10	4559364	44047175	199152198	185	12176										
ATP6V1E2	90423	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	46739273	46739273	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gtcggctttccaaggtatttGaaacctttattctctgattg	8	8	1	2	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ATP6V1E2-70	NM_080653	exon2	c.C578T	p.S193L	GTATTTGAAACCT	.	111	41	80	0	.	6	4	2	0	0	A	46739273	G	A	46739273	3	1	62	1	0	0	0	0	1	0	0	0	1185	1294	45	3	106	3	ATP6V1E2	2	46739273	Missense_Mutation	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	2692098	46739273	196460100	186	12177										
PSME4	23198	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	54152700	54152700	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	aatatttctttggaacattgGgtgaggattgtactaaacgt	10	4	1	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PSME4-275	NM_014614	exon14	c.C1785T	p.T595T	ACATTGGGTGAGG	.	121	57	119	0	.	31	20	11	0	0	A	54152700	G	A	54152700	2	1	62	1	0	0	0	0	0	0	0	1	12741	1219	43	3		3	PSME4	2	54152700	Silent	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	7413427	54152700	189046673	187	12178										
FAM161A	84140	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	62067294	62067294	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	caggaactggattggctcggAatttcttcttatactctgga	10	8	3	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	FAM161A-136	NM_032180	exon3	c.T845C	p.F282S	GCTCGGAATTTCT	.	51	29	55	0	.	2	2	0	0	0	G	62067294	A	G	62067294	3	3	62	1	0	0	0	0	1	0	0	0	5488	246	9	4	1153	4	FAM161A	2	62067294	Missense_Mutation	SNP	A	TCGA-PK-A5HB-01A-11D-A29I-10	7914594	62067294	181132079	188	12179										
AFTPH	54812	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	64780103	64780103	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	agacaatattaacaaagtcaGacctaaaacagacttctgat	5	8	2	4	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	AFTPH-70	NM_017657	exon2	c.G1495T	p.D499Y	AAGTCAGACCTAA	.	55	22	78	1	.	9	5	4	0	0	T	64780103	G	T	64780103	3	4	62	1	0	0	0	0	1	0	0	0	364	942	33	3	1497	3	AFTPH	2	64780103	Missense_Mutation	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	2712809	64780103	178419270	189	12180										
WDR92	116143	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr2	68368892	68368892	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ttccatattagcaacaggatCatctttttgccttgggtccc	7	11	2	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	WDR92-68	NM_001256476	exon4	c.G451A	p.D151N	CAGGATCATCTTT	.	158	10	170	0	.	18	17	1	0	0	T	68368892	C	T	68368892	3	4	62	1	0	0	0	0	1	0	0	0	17377	826	29	3	642	3	WDR92	2	68368892	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	3588789	68368892	174830481	190	12181										
AAK1	22848	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	69746290	69746290	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gcctgtggctgcttggcctgAgtttgcggcagaggctggct	17	10	0	2	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	AAK1-333	NM_014911	exon12	c.T1293C	p.T431T	GGCCTGAGTTTGC	.	102	43	80	0	.	11	3	8	0	0	G	69746290	A	G	69746290	2	3	62	1	0	0	0	0	0	0	0	1	16	291	11	4		4	AAK1	2	69746290	Silent	SNP	A	TCGA-PK-A5HB-01A-11D-A29I-10	1377398	69746290	173453083	191	12182										
EXOC6B	23233	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	72742236	72742236	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	tctgttttcggtagtaattcTcaaatgtttcccgggcaccc	8	11	2	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	EXOC6B-68	NM_015189	exon9	c.A935T	p.E312V	TAATTCTCAAATG	.	88	46	74	0	.	20	6	14	0	0	A	72742236	T	A	72742236	3	1	62	1	0	0	0	0	1	0	0	0	5322	1551	54	5	1556	5	EXOC6B	2	72742236	Missense_Mutation	SNP	T	TCGA-PK-A5HB-01A-11D-A29I-10	2995946	72742236	170457137	192	12183										
EGR4	1961	broad.mit.edu;mdanderson.org	37	chr2	73518917	73518917	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	cgggcaagcgaaggccttggCgtgcggccgcgggcagaagc	19	12	0	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	EGR4-90	NM_001965	exon2	c.G1438A	p.A480T	CCTTGGCGTGCGG	.	30	15	8	0	.	0	0	0	0	0	T	73518917	C	T	73518917	3	4	62	1	0	0	0	0	1	0	0	0	4985	768	27	1	335	1	EGR4	2	73518917	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	776681	73518917	169680456	193	12184										
ALMS1	7840	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	73717935	73717935	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	agaaaaccattctccccttcCtcaaggtcaggattctatag	6	12	4	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ALMS1-142	NM_015120	exon10	c.C8846A	p.P2949H	CCCTTCCTCAAGG	.	57	27	48	0	.	4	2	2	0	0	A	73717935	C	A	73717935	3	1	62	1	0	0	0	0	1	0	0	0	535	681	24	3	8884	3	ALMS1	2	73717935	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	199018	73717935	169481438	194	12185										
CCDC142	84865	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	74709403	74709403	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ggcgggctcccggccgagagCgcgaagctgcatctcgatga	16	13	1	2	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CCDC142-68	NM_032779	exon1	c.G562A	p.A188T	CGAGAGCGCGAAG	.	163	73	106	1	.	1	0	1	0	0	T	74709403	C	T	74709403	3	4	62	1	0	0	0	0	1	0	0	0	2782	768	27	1	1705	1	CCDC142	2	74709403	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	991468	74709403	168489970	195	12186										
TTC31	64427	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	74720124	74720124	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	cacttccccatgctgagctgGcaccctcaggcctaccttcc	7	19	1	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TTC31-90	NM_022492	exon13	c.G1339A	p.A447T	GAGCTGGCACCCT	.	187	81	136	0	.	24	7	17	0	0	A	74720124	G	A	74720124	3	1	62	1	0	0	0	0	1	0	0	0	16738	1203	42	3	1389	3	TTC31	2	74720124	Missense_Mutation	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	10721	74720124	168479249	196	12187										
HK2	3099	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	75104357	75104357	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ggcttatcctggtgaagatgGccaaggaggagctgctcttt	14	8	1	2	rs28363015	bycluster;byfrequency;alternate_allele	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	HK2-252	NM_000189	exon8	c.G940A	p.A314T	AAGATGGCCAAGG	.	89	43	61	1	G|0.952;C|0.048	67	28	39	0	0	A	75104357	G	A	75104357	3	1	62	1	0	0	0	0	1	0	0	0	7212	1203	42	3	970	3	HK2	2	75104357	Missense_Mutation	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	384233	75104357	168095016	197	12188										
DNAH6	1768	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	chr2	84771614	84771614	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	tctacaaaaaaatttgttcaTtgttaatcctgtatgtattt	4	5	2	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	DNAH6-69	NM_001370	exon5	c.T920G	p.I307S	TGTTCATTGTTAA	.	33	18	16	0	.	0	0	0	0	0	G	84771614	T	G	84771614	3	3	62	1	0	0	0	0	1	0	0	0	4616	1493	52	5	934	5	DNAH6	2	84771614	Missense_Mutation	SNP	T	TCGA-PK-A5HB-01A-11D-A29I-10	9667257	84771614	158427759	198	12189										
IMMT	10989	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	86371958	86371958	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	tttaatgcctccactgaaagCcagagttggtgggcttttct	10	9	1	2	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	IMMT-91	NM_006839	exon15	c.G1710A	p.W570X	TGAAAGCCAGAGT	.	63	30	44	0	.	283	101	182	0	0	T	86371958	C	T	86371958	4	4	62	1	0	0	0	0	0	1	0	0	7739	740	26	3	570	3	IMMT	2	86371958	Nonsense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	1600344	86371958	156827415	199	12190										
KDM3A	55818	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	86711133	86711133	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gtgatggtgtctggagtgcaTcataaattgaactctgaact	11	6	3	3	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	KDM3A-291	NM_001146688	exon19	c.T2946A	p.H982Q	AGTGCATCATAAA	.	127	53	109	1	.	24	18	5	1	0	A	86711133	T	A	86711133	3	1	62	1	0	0	0	0	1	0	0	0	8147	1432	50	5	3016	5	KDM3A	2	86711133	Missense_Mutation	SNP	T	TCGA-PK-A5HB-01A-11D-A29I-10	339175	86711133	156488240	200	12191										
CD8B	926	hgsc.bcm.edu	37	chr2	87088964	87088964	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	acctgtcagctgcgcggccaAgaggagccacagccgcggcc	14	16	1	1	rs62146888	byfrequency;by1000genomes	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CD8B-92	NM_004931	exon1	c.T25C	p.L9L	CGGCCAAGAGGAG	.	7	7	0	0	A|0.476;G|0.524	0	0	0	0	0	G	87088964	A	G	87088964	2	3	62	1	0	0	0	0	0	0	0	1	3051	69	3	4		4	CD8B	2	87088964	Silent	SNP	A	TCGA-PK-A5HB-01A-11D-A29I-10	377831	87088964	156110409	201	12192										
EIF2AK3	9451	broad.mit.edu	37	chr2	88857349	88857349	+	Frame_Shift_Del	DEL	T	T	-													0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	agacctctgtctgagcactgTttttcctggaaagtccaagt					novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	EIF2AK3-361	NM_004836	exon17	c.3256delA	p.T1086fs	GCACTGTTTTTCC	.	275	7	163	0	.	0	0	0	0	0	-	88857349	T	-	88857349	7	5	62	1	0	1	0	1	0	0	0	0	5009	1725	60	0	98	0	EIF2AK3	2	88857349	Frame_Shift_Del	DEL	T	TCGA-PK-A5HB-01A-11D-A29I-10	1768385	88857349	154342024	202	12193										
ANKRD39	51239	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	97519168	97519168	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ctggtcatgccgtcgtcatcCaccaccctggggttggaccc	11	16	2	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ANKRD39-44	NM_016466	exon3	c.G378A	p.V126V	GTCATCCACCACC	.	167	73	136	0	.	12	3	9	0	0	T	97519168	C	T	97519168	2	4	62	1	0	0	0	0	0	0	0	1	668	581	21	3		3	ANKRD39	2	97519168	Silent	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	8661819	97519168	145680205	203	12194										
ZAP70	7535	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	chr2	98340777	98340777	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ctactcgcgcgaccccgacgGgctgccctgcaacctgcgca	11	19	0	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ZAP70-955	NM_001079	exon3	c.G278A	p.G93E	CCGACGGGCTGCC	.	122	66	13	0	.	0	0	0	0	0	A	98340777	G	A	98340777	3	1	62	1	0	0	0	0	1	0	0	0	17552	1232	43	3	280	3	ZAP70	2	98340777	Missense_Mutation	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	821609	98340777	144858596	204	12195										
TBC1D8	11138	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr2	101652587	101652587	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	acacggttctgccgtattccAcaaagtggtcattccacagg	9	12	2	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TBC1D8-25	NM_001102426	exon9	c.T1451C	p.V484A	TATTCCACAAAGT	.	68	6	136	0	.	10	10	0	0	0	G	101652587	A	G	101652587	3	3	62	1	0	0	0	0	1	0	0	0	15662	159	6	4	2019	4	TBC1D8	2	101652587	Missense_Mutation	SNP	A	TCGA-PK-A5HB-01A-11D-A29I-10	3311810	101652587	141546786	205	12196										
MAP4K4	9448	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	102483026	102483026	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ctcagagtggctccggggaaCgcttcagagtgagatgtaag	15	8	2	3	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	MAP4K4-547	NM_001242559	exon18	c.C2107T	p.R703C	GGGGAACGCTTCA	.	72	53	106	0	.	13	7	6	0	0	T	102483026	C	T	102483026	3	4	62	1	0	0	0	0	1	0	0	0	9290	536	19	1	2415	1	MAP4K4	2	102483026	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	830439	102483026	140716347	206	12197										
SLC9A2	6549	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	103300745	103300745	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ctgtgtttcctcggaaaaaaTtgtttattacggctgccatt	8	8	0	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SLC9A2-157	NM_003048	exon5	c.T1375C	p.L459L	AAAAAATTGTTTA	.	131	116	174	0	.	1	0	1	0	0	C	103300745	T	C	103300745	2	2	62	1	0	0	0	0	0	0	0	1	14747	1490	52	4		4	SLC9A2	2	103300745	Silent	SNP	T	TCGA-PK-A5HB-01A-11D-A29I-10	817719	103300745	139898628	207	12198										
SLC5A7	60482	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	108609479	108609479	+	Nonsense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	aaaggggtatgtgaccatgtTagacccgtttcagcaaatct	10	8	2	2	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SLC5A7-93	NM_021815	exon4	c.T344A	p.L115X	CCATGTTAGACCC	.	84	63	155	0	.	0	0	0	0	0	A	108609479	T	A	108609479	4	1	62	1	0	0	0	0	0	1	0	0	14705	1764	61	5	354	5	SLC5A7	2	108609479	Nonsense_Mutation	SNP	T	TCGA-PK-A5HB-01A-11D-A29I-10	5308734	108609479	134589894	208	12199										
NPHP1	4867	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	110902136	110902136	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	agtaccaccattcaagaaaaGctcataagttctataaaaga	5	8	3	2	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	NPHP1-92	NM_000272	exon15	c.C1531T	p.L511F	AGAAAAGCTCATA	.	108	77	196	0	.	0	0	0	0	0	A	110902136	G	A	110902136	3	1	62	1	0	0	0	0	1	0	0	0	10608	971	34	3	694	3	NPHP1	2	110902136	Missense_Mutation	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	2292657	110902136	132297237	209	12200										
DPP10	57628	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	116101426	116101426	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ttcgtcagaaaccagattgtCtttggaagacctctttagga	9	8	3	3	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	DPP10-142	NM_001178034	exon3	c.C221A	p.S74Y	GATTGTCTTTGGA	.	40	12	62	0	.	7	3	4	0	0	A	116101426	C	A	116101426	3	1	62	1	0	0	0	0	1	0	0	0	4738	913	32	3	390	3	DPP10	2	116101426	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	5199290	116101426	127097947	210	12201										
INHBB	3625	hgsc.bcm.edu	37	chr2	121103890	121103890	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	cctgccgcgccgccgccaccCccgccacccggatccccggg	11	25	0	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	INHBB-93	NM_002193	exon1	c.C126T	p.P42P	GCCACCCCCGCCA	.	9	7	1	0	.	1	1	0	0	0	T	121103890	C	T	121103890	2	4	62	1	0	0	0	0	0	0	0	1	7763	610	22	3		3	INHBB	2	121103890	Silent	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	5002464	121103890	122095483	211	12202			1	58		6	6	2814	N	C_A	3.192117e-07
INHBB	3625	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	chr2	121103925	121103925	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	cccgggtggctcgcaggacaCctgtacgtcgtgcggcggct	16	14	0	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	INHBB-93	NM_002193	exon1	c.C161A	p.T54N	AGGACACCTGTAC	.	43	38	9	0	.	8	8	0	0	0	A	121103925	C	A	121103925	3	1	62	1	0	0	0	0	1	0	0	0	7763	507	18	3	163	3	INHBB	2	121103925	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	35	121103925	122095448	212	12203			1	58		6	6	2814	N	C_A	3.192117e-07
INHBB	3625	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	chr2	121103941	121103941	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gacacctgtacgtcgtgcggCggcttccggcggccagagga	16	13	0	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	INHBB-93	NM_002193	exon1	c.C177T	p.G59G	GTGCGGCGGCTTC	.	57	51	15	0	.	7	7	0	0	0	T	121103941	C	T	121103941	2	4	62	1	0	0	0	0	0	0	0	1	7763	755	27	1		1	INHBB	2	121103941	Silent	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	16	121103941	122095432	213	12204			1	58		6	6	2814	N	C_A	3.192117e-07
INHBB	3625	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr2	121103965	121103965	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ttccggcggccagaggagctCggccgagtggacggcgactt	17	12	0	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	INHBB-93	NM_002193	exon1	c.C201T	p.L67L	GGAGCTCGGCCGA	.	75	63	21	0	.	9	9	0	0	0	T	121103965	C	T	121103965	2	4	62	1	0	0	0	0	0	0	0	1	7763	871	31	1		1	INHBB	2	121103965	Silent	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	24	121103965	122095408	214	12205			1	58		6	6	2814	N	C_A	3.192117e-07
INHBB	3625	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	chr2	121104035	121104035	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gccgcctgcagatgcggggcCggcccaacatcacgcacgcc	13	18	1	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	INHBB-93	NM_002193	exon1	c.C271T	p.R91W	CGGGGCCGGCCCA	.	66	52	11	0	.	9	9	0	0	0	T	121104035	C	T	121104035	3	4	62	1	0	0	0	0	1	0	0	0	7763	643	23	1	273	1	INHBB	2	121104035	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	70	121104035	122095338	215	12206			1	58		6	6	2814	N	C_A	3.192117e-07
INHBB	3625	ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	121106703	121106703	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gcctcctcccgggtccgcctAtacttcttcatctccaacga	6	18	3	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	INHBB-93	NM_002193	exon2	c.A477G	p.L159L	CCGCCTATACTTC	.	125	87	231	2	.	70	64	6	0	0	G	121106703	A	G	121106703	2	3	62	1	0	0	0	0	0	0	0	1	7763	436	16	4		4	INHBB	2	121106703	Silent	SNP	A	TCGA-PK-A5HB-01A-11D-A29I-10	2668	121106703	122092670	216	12207			1	58		6	6	2814	N	C_A	3.192117e-07
CLASP1	23332	ucsc.edu;bcgsc.ca	37	chr2	122216419	122216419	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gcctataacatacttacccgAataattaacctaacagctac	3	12	0	0	rs2304560	byfrequency	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CLASP1-91	NM_001207051	exon13	c.T1311C	p.I437I	TACCCGAATAATT	.	42	4	63	0	A|0.779;G|0.221	0	0	0	0	0	G	122216419	A	G	122216419	2	3	62	1	0	0	0	0	0	0	0	1	3460	242	9	4		4	CLASP1	2	122216419	Silent	SNP	A	TCGA-PK-A5HB-01A-11D-A29I-10	1109716	122216419	120982954	217	12208										
ARHGEF4	50649	broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr2	131797625	131797625	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	acgagcccgcggatgacgacGcccctctggccgggaacagc	14	16	1	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ARHGEF4-292	NM_032995	exon7	c.G784A	p.A262T	GACGACGCCCCTC	.	147	117	73	1	.	0	0	0	0	0	A	131797625	G	A	131797625	3	1	62	1	0	0	0	0	1	0	0	0	908	1087	38	1	802	1	ARHGEF4	2	131797625	Missense_Mutation	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	9581206	131797625	111401748	218	12209										
THSD7B	80731	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	137814011	137814011	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	tccgtggggaaggtgtacagGagactgtggtcccggaggag	19	7	0	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	THSD7B-75	.	.	.	.	GTACAGGAGACTG	.	66	33	53	0	.	14	7	7	0	0	A	137814011	G	A	137814011	3	1	62	1	0	0	0	0	1	0	0	0	15917	1174	41	3	74	3	THSD7B	2	137814011	Missense_Mutation	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	6016386	137814011	105385362	219	12210										
LRP1B	53353	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	141259364	141259364	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	tctgaaccatcgccacagtcAtccttattgtcgcaaagacc	6	14	2	2	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	LRP1B-311	NM_018557	exon55	c.T8742C	p.D2914D	ACAGTCATCCTTA	.	86	34	102	0	.	0	0	0	0	0	G	141259364	A	G	141259364	2	3	62	1	0	0	0	0	0	0	0	1	8982	214	8	4		4	LRP1B	2	141259364	Silent	SNP	A	TCGA-PK-A5HB-01A-11D-A29I-10	3445353	141259364	101940009	220	12211										
LRP1B	53353	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	141707930	141707930	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ctgattatcaaagcaagagtGaacacagcccacctcatcac	6	13	3	3	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	LRP1B-311	NM_018557	exon20	c.C3010T	p.H1004Y	AAGAGTGAACACA	.	200	93	191	1	.	0	0	0	0	0	A	141707930	G	A	141707930	3	1	62	1	0	0	0	0	1	0	0	0	8982	1290	45	3	11077	3	LRP1B	2	141707930	Missense_Mutation	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	448566	141707930	101491443	221	12212										
RBM43	375287	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr2	152107742	152107743	+	Frame_Shift_Ins	INS	-	-	TC													0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ggtgatttcaccatccacttINStctcctgactcagaatgtgg					novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	RBM43-90	NM_198557	exon4	c.752_753insGA	p.K251fs	TCCACTTTCTCCT	.	42	16	37	0	.	0	0	0	0	0	TC	152107743	-	TC	152107742	7	5	62	1	0	1	1	0	0	0	0	0	13172	1841	64	0	325	0	RBM43	2	152107742	Frame_Shift_Ins	INS	-	TCGA-PK-A5HB-01A-11D-A29I-10	10399812	152107742	91091631	222	12213										
GALNT5	11227	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	158115854	158115854	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ttacctgaagacagtggaacGcaccaggtgttaagaattga	11	7	0	4	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	GALNT5-290	NM_014568	exon1	c.G1260A	p.T420T	TGGAACGCACCAG	.	71	33	60	0	.	0	0	0	0	0	A	158115854	G	A	158115854	2	1	62	1	0	0	0	0	0	0	0	1	6236	1074	38	1		1	GALNT5	2	158115854	Silent	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	6008112	158115854	85083519	223	12214										
TANC1	85461	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	159954275	159954275	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ggccaaaggtgtctcgatgtCtctgccttcctcacctttgc	9	14	3	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TANC1-92	NM_033394	exon4	c.C188T	p.S63F	CGATGTCTCTGCC	.	125	49	64	0	.	5	3	2	0	0	T	159954275	C	T	159954275	3	4	62	1	0	0	0	0	1	0	0	0	15581	913	32	3	194	3	TANC1	2	159954275	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	1838421	159954275	83245098	224	12215										
WDSUB1	151525	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	160132121	160132121	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	tcctgaccacatgatgccagTcgaaaaaactgaagaccttg	8	11	0	4	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	WDSUB1-90	NM_152528	exon4	c.A612G	p.R204R	TGCCAGTCGAAAA	.	139	71	101	0	.	20	10	10	0	0	C	160132121	T	C	160132121	2	2	62	1	0	0	0	0	0	0	0	1	17379	1654	58	4		4	WDSUB1	2	160132121	Silent	SNP	T	TCGA-PK-A5HB-01A-11D-A29I-10	177846	160132121	83067252	225	12216										
MARCH7	64844	hgsc.bcm.edu;bcgsc.ca	37	chr2	160604680	160604680	+	Frame_Shift_Del	DEL	T	T	-													0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gcttctagcatgtcatctacTtttttttcacgaagatctag					novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	MARCH7-68	NM_022826	exon5	c.879delT	p.T293fs	ATCTACTTTTTTT	.	106	48	98	2	.	0	0	0	0	0	-	160604680	T	-	160604680	7	5	62	1	0	1	0	1	0	0	0	0	9334	1596	56	0	893	0	MARCH7	2	160604680	Frame_Shift_Del	DEL	T	TCGA-PK-A5HB-01A-11D-A29I-10	472559	160604680	82594693	226	12217										
PLA2R1	22925	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	160885416	160885416	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	tcagaccactgccagccagcGtgttcatccagctgattgag	10	13	2	3	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PLA2R1-93	NM_001195641	exon5	c.C900T	p.H300H	GCCAGCGTGTTCA	.	389	193	275	1	.	0	0	0	0	0	A	160885416	G	A	160885416	2	1	62	1	0	0	0	0	0	0	0	1	12039	1136	40	1		1	PLA2R1	2	160885416	Silent	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	280736	160885416	82313957	227	12218										
TBR1	10716	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	162274227	162274227	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gttttaacatttctggtctcGatcccacggctcattacaat	6	11	3	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TBR1-91	NM_006593	exon2	c.G733T	p.D245Y	GGTCTCGATCCCA	.	78	25	97	1	.	0	0	0	0	0	T	162274227	G	T	162274227	3	4	62	1	0	0	0	0	1	0	0	0	15684	1058	37	2	739	2	TBR1	2	162274227	Missense_Mutation	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	1388811	162274227	80925146	228	12219										
SLC4A10	57282	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	162719408	162719408	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ggttcttgaccaacaagtgaGctcaggtcagctgaatgaag	12	8	3	4	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SLC4A10-229	NM_001178016	exon7	c.G635A	p.S212N	AAGTGAGCTCAGG	.	246	118	179	0	.	0	0	0	0	0	A	162719408	G	A	162719408	3	1	62	1	0	0	0	0	1	0	0	0	14686	971	34	3	709	3	SLC4A10	2	162719408	Missense_Mutation	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	445181	162719408	80479965	229	12220										
FIGN	55137	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	164466944	164466944	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gttaccaggtcgatgaggtgCgtgtcagtattcttcagttg	13	7	3	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	FIGN-156	NM_018086	exon3	c.G1398A	p.T466T	GAGGTGCGTGTCA	.	260	100	253	1	.	1	1	0	0	0	T	164466944	C	T	164466944	2	4	62	1	0	0	0	0	0	0	0	1	5910	755	27	1		1	FIGN	2	164466944	Silent	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	1747536	164466944	78732429	230	12221										
SCN2A	6326	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	166153538	166153538	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ctttttcagacgtttatagtAttgaataaagggaaagcaat	8	4	1	2	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SCN2A-142	NM_001040143	exon2	c.A279T	p.V93V	TATAGTATTGAAT	.	150	65	135	1	.	0	0	0	0	0	T	166153538	A	T	166153538	2	4	62	1	0	0	0	0	0	0	0	1	13951	436	16	5		5	SCN2A	2	166153538	Silent	SNP	A	TCGA-PK-A5HB-01A-11D-A29I-10	1686594	166153538	77045835	231	12222										
SCN2A	6326	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	166226748	166226748	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	aatgctgctaaagtgggttgCatatggttttcaagtgtatt	11	4	1	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SCN2A-142	NM_001040143	exon19	c.C3788T	p.A1263V	GGGTTGCATATGG	.	158	83	160	0	.	0	0	0	0	0	T	166226748	C	T	166226748	3	4	62	1	0	0	0	0	1	0	0	0	13951	710	25	3	3958	3	SCN2A	2	166226748	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	73210	166226748	76972625	232	12223										
GALNT3	2591	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	166611442	166611442	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	aggaacaggaaaatactcacGtatccagatataacaggatt	8	7	1	1	rs144331248	byfrequency;alternate_allele	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	GALNT3-92	NM_004482	exon8	c.C1524G	p.Y508X	ACTCACGTATCCA	.	105	38	99	0	G|1.000;A|0.000	0	0	0	0	0	C	166611442	G	C	166611442	4	2	62	1	0	0	0	0	0	1	0	0	6234	1159	40	2	393	2	GALNT3	2	166611442	Nonsense_Mutation	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	384694	166611442	76587931	233	12224										
GALNT3	2591	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	166621434	166621434	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	accaaaatgatttccttcagCagtattgcaggtgaagaata	8	7	1	3	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	GALNT3-92	NM_004482	exon3	c.G648A	p.L216L	CTTCAGCAGTATT	.	318	141	290	1	.	0	0	0	0	0	T	166621434	C	T	166621434	2	4	62	1	0	0	0	0	0	0	0	1	6234	697	25	3		3	GALNT3	2	166621434	Silent	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	9992	166621434	76577939	234	12225										
TTC21B	79809	ucsc.edu;bcgsc.ca	37	chr2	166781188	166781188	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	aggttgcccaggacttgcagGctaaacaaaacaaatcagca	9	10	1	0	rs16851307	byfrequency	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TTC21B-94	NM_024753	exon12	c.C1387T	p.P463S	TTGCAGGCTAAAC	.	107	49	114	1	G|0.983;A|0.017	0	0	0	0	0	A	166781188	G	A	166781188	3	1	62	1	0	0	0	0	1	0	0	0	16726	1217	42	3	2635	3	TTC21B	2	166781188	Missense_Mutation	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	159754	166781188	76418185	235	12226										
SCN7A	6332	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr2	167330837	167330837	+	Frame_Shift_Del	DEL	A	A	-													0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ctgaagattgttctatttttAtttaatactatgaaagtctg					novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SCN7A-67	NM_002976	exon3	c.252delT	p.N84fs	ATTTTTATTTAAT	.	39	12	40	0	.	0	0	0	0	0	-	167330837	A	-	167330837	7	5	62	1	0	1	0	1	0	0	0	0	13958	446	16	0	4888	0	SCN7A	2	167330837	Frame_Shift_Del	DEL	A	TCGA-PK-A5HB-01A-11D-A29I-10	549649	167330837	75868536	236	12227										
XIRP2	129446	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	168099879	168099879	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	acagctcggtggatgtttgaAacaaggccattggactcaat	11	8	1	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	XIRP2-104	NM_152381	exon9	c.A1977C	p.E659D	GTTTGAAACAAGG	.	419	200	345	0	.	0	0	0	0	0	C	168099879	A	C	168099879	3	2	62	1	0	0	0	0	1	0	0	0	17468	11	1	5	2007	5	XIRP2	2	168099879	Missense_Mutation	SNP	A	TCGA-PK-A5HB-01A-11D-A29I-10	769042	168099879	75099494	237	12228										
DHRS9	10170	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	169948425	169948425	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ttgggagcagctgtctccagAcatcaaacaacaatatggag	10	9	2	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	DHRS9-90	NM_005771	exon7	c.A698G	p.D233G	CTCCAGACATCAA	.	117	48	99	0	.	1	0	1	0	0	G	169948425	A	G	169948425	3	3	62	1	0	0	0	0	1	0	0	0	4509	275	10	4	708	4	DHRS9	2	169948425	Missense_Mutation	SNP	A	TCGA-PK-A5HB-01A-11D-A29I-10	1848546	169948425	73250948	238	12229										
LRP2	4036	broad.mit.edu	37	chr2	170127462	170127462	+	Frame_Shift_Del	DEL	A	A	-													0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	catgtgttttgacatatctgAaaaaaagatagtgctgtcct					novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	LRP2-175	NM_004525	exon16	c.2272delT	p.S758fs	TATCTGAAAAAAA	.	258	7	184	0	.	0	0	0	0	0	-	170127462	A	-	170127462	7	5	62	1	0	1	0	1	0	0	0	0	8983	246	9	0	11951	0	LRP2	2	170127462	Frame_Shift_Del	DEL	A	TCGA-PK-A5HB-01A-11D-A29I-10	179037	170127462	73071911	239	12230										
HNRNPA3	220988	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	178083867	178083867	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gggcagttttggtggaagaaGctcgggcagtccctatggtg	17	7	0	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	HNRNPA3-70	NM_194247	exon9	c.G1064A	p.S355N	GAAGAAGCTCGGG	.	28	10	39	0	.	279	163	116	0	0	A	178083867	G	A	178083867	3	1	62	1	0	0	0	0	1	0	0	0	7281	971	34	3	1098	3	HNRNPA3	2	178083867	Missense_Mutation	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	7956405	178083867	65115506	240	12231										
AGPS	8540	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	178285080	178285080	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gggccaaattgaattgactgGgaaaaggtaaccctggttta	12	6	0	2	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	AGPS-92	NM_003659	exon2	c.G344T	p.G115V	TGACTGGGAAAAG	.	82	33	77	0	.	0	0	0	0	0	T	178285080	G	T	178285080	3	4	62	1	0	0	0	0	1	0	0	0	394	1232	43	3	350	3	AGPS	2	178285080	Missense_Mutation	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	201213	178285080	64914293	241	12232										
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	179401241	179401241	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ctggcaggtggcttccaggcCacaacacaagaatcttttgt	10	11	1	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TTN-636	NM_001267550	exon357	c.G100233T	p.V33411V	CCAGGCCACAACA	.	56	25	51	0	.	0	0	0	0	0	A	179401241	C	A	179401241	2	1	62	1	0	0	0	0	0	0	0	1	16773	581	21	3		3	TTN	2	179401241	Silent	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	1116161	179401241	63798132	242	12233										
TTN	7273	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	179410344	179410344	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	tcattgccaccatcagattcAggttttgtccactgaatgat	7	10	3	3	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TTN-636	NM_001267550	exon344	c.T95493A	p.P31831P	AGATTCAGGTTTT	.	286	130	208	1	.	0	0	0	0	0	T	179410344	A	T	179410344	2	4	62	1	0	0	0	0	0	0	0	1	16773	175	7	5		5	TTN	2	179410344	Silent	SNP	A	TCGA-PK-A5HB-01A-11D-A29I-10	9103	179410344	63789029	243	12234										
TTN	7273	hgsc.bcm.edu;bcgsc.ca	37	chr2	179434526	179434527	+	Frame_Shift_Ins	INS	-	-	T													0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	tcaccaacactcacatcacaINStttttcaacaatgtatcctt					novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TTN-636	NM_001267550	exon326	c.76333_76334insA	p.C25445fs	CATCACATTTTTC	.	55	28	56	1	.	0	0	0	0	0	T	179434527	-	T	179434526	7	5	62	1	0	1	1	0	0	0	0	0	16773	217	8	0	31794	0	TTN	2	179434526	Frame_Shift_Ins	INS	-	TCGA-PK-A5HB-01A-11D-A29I-10	24182	179434526	63764847	244	12235										
TTN	7273	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	179445148	179445148	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	tttgttcacattttcacagcGcaagaaagtgtcaaagtcag	8	8	4	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TTN-636	NM_001267550	exon317	c.C66958T	p.R22320C	CACAGCGCAAGAA	.	139	57	117	1	.	0	0	0	0	0	A	179445148	G	A	179445148	3	1	62	1	0	0	0	0	1	0	0	0	16773	1087	38	1	41205	1	TTN	2	179445148	Missense_Mutation	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	10622	179445148	63754225	245	12236										
FAM171B	165215	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	187627230	187627230	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ttcactcaagtagaaagctcGagagggagaaaacattcatc	9	8	3	3	rs144563922		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	FAM171B-141	NM_177454	exon8	c.G2161A	p.E721K	AAGCTCGAGAGGG	.	135	69	108	0	G|1.000;A|0.000	1	0	1	0	0	A	187627230	G	A	187627230	3	1	62	1	0	0	0	0	1	0	0	0	5507	1059	37	1	2191	1	FAM171B	2	187627230	Missense_Mutation	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	8182082	187627230	55572143	246	12237										
TFPI	7035	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	188348876	188348876	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	aggctgggaaccttggttgaTtgcggagtcagggagttatt	16	5	1	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TFPI-91	NM_001032281	exon6	c.A603C	p.Q201H	GGTTGATTGCGGA	.	90	44	72	0	.	11	11	0	0	0	G	188348876	T	G	188348876	3	3	62	1	0	0	0	0	1	0	0	0	15845	1490	52	5	455	5	TFPI	2	188348876	Missense_Mutation	SNP	T	TCGA-PK-A5HB-01A-11D-A29I-10	721646	188348876	54850497	247	12238										
SLC40A1	30061	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	190436531	190436531	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	agtactggccaaatttgcaaTatttgcaatagtgatgatca	8	6	1	2	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SLC40A1-91	NM_014585	exon5	c.A424T	p.I142F	TTGCAATATTTGC	.	213	71	161	0	.	10	10	0	0	0	A	190436531	T	A	190436531	3	1	62	1	0	0	0	0	1	0	0	0	14663	1406	49	5	1307	5	SLC40A1	2	190436531	Missense_Mutation	SNP	T	TCGA-PK-A5HB-01A-11D-A29I-10	2087655	190436531	52762842	248	12239										
SLC40A1	30061	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	190436542	190436542	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	aatttgcaatatttgcaataGtgatgatcaggatatagcag	9	4	1	2	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SLC40A1-91	NM_014585	exon5	c.C413G	p.T138S	GCAATAGTGATGA	.	190	61	153	0	.	21	20	1	0	0	C	190436542	G	C	190436542	3	2	62	1	0	0	0	0	1	0	0	0	14663	1029	36	3	1318	3	SLC40A1	2	190436542	Missense_Mutation	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	11	190436542	52762831	249	12240										
DNAH7	56171	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	196799351	196799351	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	atcataactctctctaattcAaccaaccacttctccacttg	1	15	5	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	DNAH7-102	NM_018897	exon21	c.T3435A	p.V1145V	TAATTCAACCAAC	.	174	63	157	2	.	0	0	0	0	0	T	196799351	A	T	196799351	2	4	62	1	0	0	0	0	0	0	0	1	4617	117	5	5		5	DNAH7	2	196799351	Silent	SNP	A	TCGA-PK-A5HB-01A-11D-A29I-10	6362809	196799351	46400022	250	12241										
DNAH7	56171	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	196837087	196837087	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ttagcctcatgtctgctggaGaaaagttgacatactcgatg	10	8	2	2	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	DNAH7-102	NM_018897	exon16	c.C1937A	p.S646Y	GCTGGAGAAAAGT	.	175	76	139	0	.	0	0	0	0	0	T	196837087	G	T	196837087	3	4	62	1	0	0	0	0	1	0	0	0	4617	942	33	3	10337	3	DNAH7	2	196837087	Missense_Mutation	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	37736	196837087	46362286	251	12242										
HECW2	57520	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	197143276	197143276	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	cccgcactgtggctgcgttgCcttgtcaggtgttgccgatg	14	12	1	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	HECW2-668	NM_020760	exon15	c.G3111A	p.R1037R	GCGTTGCCTTGTC	.	209	83	148	0	.	1	1	0	0	0	T	197143276	C	T	197143276	2	4	62	1	0	0	0	0	0	0	0	1	7064	738	26	3		3	HECW2	2	197143276	Silent	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	306189	197143276	46056097	252	12243										
ANKRD44	91526	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	197865169	197865169	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ttgtcatctctacaactgacGatactggaatctatggcccc	7	12	3	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ANKRD44-230	NM_001195144	exon23	c.C2493T	p.I831I	ACTGACGATACTG	.	128	68	113	1	.	4	3	1	0	0	A	197865169	G	A	197865169	2	1	62	1	0	0	0	0	0	0	0	1	672	1048	37	1		1	ANKRD44	2	197865169	Silent	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	721893	197865169	45334204	253	12244										
MARS2	92935	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	198571904	198571904	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ttggctggtgaaagcccaccGgacctagaaactcagttctt	10	11	2	2	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	MARS2-92	NM_138395	exon1	c.G1775A	p.R592Q	CCCACCGGACCTA	.	67	25	79	0	.	47	26	21	0	0	A	198571904	G	A	198571904	3	1	62	1	0	0	0	0	1	0	0	0	9345	1116	39	1	1777	1	MARS2	2	198571904	Missense_Mutation	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	706735	198571904	44627469	254	12245										
C2orf69	205327	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	200789972	200789972	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gaaaagtaacatgtttggtgCcccagaacacaatactgact	8	9	0	2	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	C2orf69-23	NM_153689	exon2	c.C521T	p.A174V	TTGGTGCCCCAGA	.	171	81	136	2	.	36	21	15	0	0	T	200789972	C	T	200789972	3	4	62	1	0	0	0	0	1	0	0	0	2194	739	26	3	527	3	C2orf69	2	200789972	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	2218068	200789972	42409401	255	12246										
BZW1	9689	hgsc.bcm.edu	37	chr2	201677182	201677182	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gcgcctcagtgactgtggtcCgctcgttgcggcggccgcca	15	15	1	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	BZW1-90	NM_001207068	exon1	c.C52T	p.R18C	GTGGTCCGCTCGT	.	13	6	0	0	.	0	0	0	0	0	T	201677182	C	T	201677182	3	4	62	1	0	0	0	0	1	0	0	0	1581	667	23	1		1	BZW1	2	201677182	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	887210	201677182	41522191	256	12247										
MPP4	58538	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	202520986	202520986	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	acctcaccacctcctcgtaaGgggcacccactgcactgtag	8	17	1	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	MPP4-22	NM_033066	exon17	c.C1235T	p.P412L	TCGTAAGGGGCAC	.	537	237	414	0	.	0	0	0	0	0	A	202520986	G	A	202520986	3	1	62	1	0	0	0	0	1	0	0	0	9764	1000	35	3	702	3	MPP4	2	202520986	Missense_Mutation	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	843804	202520986	40678387	257	12248										
ALS2	57679	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	202619338	202619338	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ttctccactgtatgtgggggTcagaaccactgtcctcgttt	10	11	2	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ALS2-275	NM_020919	exon6	c.A1528T	p.T510S	TGGGGGTCAGAAC	.	112	40	99	1	.	4	4	0	0	0	A	202619338	T	A	202619338	3	1	62	1	0	0	0	0	1	0	0	0	550	1667	58	5	3561	5	ALS2	2	202619338	Missense_Mutation	SNP	T	TCGA-PK-A5HB-01A-11D-A29I-10	98352	202619338	40580035	258	12249										
FZD7	8324	bcgsc.ca	37	chr2	202900893	202900893	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	cacctggctcctgcagacgtGcaagagctatgccgtgccct	11	15	0	2	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	FZD7-659	NM_003507	exon1	c.G1523A	p.C508Y	AGACGTGCAAGAG	.	132	59	100	2	.	7	2	5	0	0	A	202900893	G	A	202900893	3	1	62	1	0	0	0	0	1	0	0	0	6154	1319	46	3	1525	3	FZD7	2	202900893	Missense_Mutation	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	281555	202900893	40298480	259	12250										
NBEAL1	65065	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr2	204032074	204032075	+	Frame_Shift_Ins	INS	-	-	A													0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ccaactactttctcaatttcINSaaaaaagaggtatgtattat					novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	NBEAL1-92	NM_001114132	exon37	c.5901_5902insA	p.F1967fs	CAATTTCAAAAAA	.	40	14	44	0	.	0	0	0	0	0	A	204032075	-	A	204032074	7	5	62	1	0	1	1	0	0	0	0	0	10216	825	29	0	6043	0	NBEAL1	2	204032074	Frame_Shift_Ins	INS	-	TCGA-PK-A5HB-01A-11D-A29I-10	1131181	204032074	39167299	260	12251	139	2								
NBEAL1	65065	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr2	204032081	204032081	+	Missense_Mutation	SNP	G	G	A													0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	actttctcaatttcaaaaaaGaggtatgtattatggtttca					novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	NBEAL1-92	NM_001114132	exon37	c.G5908A	p.E1970K	AAAAAAGAGGTAT	.	37	16	43	0	.	0	0	0	0	0	A	204032081	G	A	204032081	3	1	62	1	0	0	0	0	1	0	0	0	10216	943	33	3	6050	3	NBEAL1	2	204032081	Missense_Mutation	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	7	204032081	39167292	261	12252	139	2								
PARD3B	117583	hgsc.bcm.edu;bcgsc.ca	37	chr2	206166297	206166298	+	Frame_Shift_Ins	INS	-	-	A													0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	aaaataaagccaggaaagtcINSaaaaaaacgaaagagaagga					novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PARD3B-140	NM_205863	exon18	c.2502_2503insA	p.V834fs	GAAAGTCAAAAAA	.	205	81	186	0	.	0	0	0	0	0	A	206166298	-	A	206166297	7	5	62	1	0	1	1	0	0	0	0	0	11473	813	29	0	2572	0	PARD3B	2	206166297	Frame_Shift_Ins	INS	-	TCGA-PK-A5HB-01A-11D-A29I-10	2134216	206166297	37033076	262	12253										
FASTKD2	22868	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	207635989	207635989	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gtgtattggaaaagatgcacCgattgctcttaagaggaaac	11	6	1	2	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	FASTKD2-118	NM_001136193	exon4	c.C965T	p.P322L	ATGCACCGATTGC	.	60	23	51	0	.	56	27	29	0	0	T	207635989	C	T	207635989	3	4	62	1	0	0	0	0	1	0	0	0	5705	652	23	1	975	1	FASTKD2	2	207635989	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	1469692	207635989	35563384	263	12254										
PLEKHM3	389072	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	208725974	208725974	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gcccaagaatggagccagctTtccctctattacctgcagaa	8	13	1	2	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PLEKHM3-23	NM_001080475	exon7	c.A1963G	p.K655E	CCAGCTTTCCCTC	.	120	50	97	0	.	3	0	3	0	0	C	208725974	T	C	208725974	3	2	62	1	0	0	0	0	1	0	0	0	12111	1850	64	4	330	4	PLEKHM3	2	208725974	Missense_Mutation	SNP	T	TCGA-PK-A5HB-01A-11D-A29I-10	1089985	208725974	34473399	264	12255										
CRYGD	1421	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr2	208986447	208986447	+	Frame_Shift_Del	DEL	C	C	-													0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gcccactctggcattcgtggCcccccagtcctggtagcgcc					novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CRYGD-90	NM_006891	exon3	c.475delG	p.A159fs	TCGTGGCCCCCCA	.	106	39	91	0	.	0	0	0	0	0	-	208986447	C	-	208986447	7	5	62	1	0	1	0	1	0	0	0	0	3923	739	26	0	53	0	CRYGD	2	208986447	Frame_Shift_Del	DEL	C	TCGA-PK-A5HB-01A-11D-A29I-10	260473	208986447	34212926	265	12256										
ERBB4	2066	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	212589889	212589889	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	aaggtccgtagcatctgccgTcacattgttctgcacacacc	8	14	3	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ERBB4-1461	NM_001042599	exon6	c.A653G	p.D218G	CTGCCGTCACATT	.	298	120	217	2	.	0	0	0	0	0	C	212589889	T	C	212589889	3	2	62	1	0	0	0	0	1	0	0	0	5222	1667	58	4	3365	4	ERBB4	2	212589889	Missense_Mutation	SNP	T	TCGA-PK-A5HB-01A-11D-A29I-10	3603442	212589889	30609484	266	12257										
FN1	2335	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	216244003	216244003	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gcgctcaggcttgtgggtgtGacctgagtgaacttcaggtc	15	9	2	3	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	FN1-584	NM_212482	exon34	c.C5472T	p.V1824V	GGGTGTGACCTGA	.	197	96	147	0	.	212	143	68	0	1	A	216244003	G	A	216244003	2	1	62	1	0	0	0	0	0	0	0	1	5981	1277	45	3		3	FN1	2	216244003	Silent	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	3654114	216244003	26955370	267	12258										
TNS1	7145	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	218686598	218686598	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	cactaaagctcttgggctcaGagtcctgagctcggggtcca	12	12	2	2	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TNS1-156	NM_022648	exon23	c.C3125G	p.S1042C	GGCTCAGAGTCCT	.	204	86	176	2	.	30	17	13	0	0	C	218686598	G	C	218686598	3	2	62	1	0	0	0	0	1	0	0	0	16380	942	33	3	2126	3	TNS1	2	218686598	Missense_Mutation	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	2442595	218686598	24512775	268	12259										
TMBIM1	64114	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	219146728	219146728	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	agccagcagggtgaccgtagCcaggctgcgggtagccaggg	18	11	0	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TMBIM1-90	NM_022152	exon2	c.G137A	p.G46D	CCGTAGCCAGGCT	.	139	66	95	1	.	44	15	29	0	0	T	219146728	C	T	219146728	3	4	62	1	0	0	0	0	1	0	0	0	16018	739	26	3	842	3	TMBIM1	2	219146728	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	460130	219146728	24052645	269	12260										
SLC11A1	6556	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	219251383	219251383	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ccgcaccgtcctctggctgaCcatcgagctagccattgtgg	11	15	1	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SLC11A1-93	NM_000578	exon5	c.C419A	p.T140N	GGCTGACCATCGA	.	94	50	76	0	.	1	1	0	0	0	A	219251383	C	A	219251383	3	1	62	1	0	0	0	0	1	0	0	0	14415	507	18	3	437	3	SLC11A1	2	219251383	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	104655	219251383	23947990	270	12261										
CCDC108	255101	hgsc.bcm.edu;bcgsc.ca	37	chr2	219895931	219895932	+	Frame_Shift_Ins	INS	-	-	T													0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	taaggggctgaaaggtcaccINSttgatctgagaggcctggcc					novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CCDC108-94	NM_194302	exon8	c.912_913insA	p.K304fs	GGTCACCTTGATC	.	218	103	149	2	.	0	0	0	0	0	T	219895932	-	T	219895931	7	5	62	1	0	1	1	0	0	0	0	0	2749	680	24	0	4977	0	CCDC108	2	219895931	Frame_Shift_Ins	INS	-	TCGA-PK-A5HB-01A-11D-A29I-10	644548	219895931	23303442	271	12262										
CHPF	79586	hgsc.bcm.edu	37	chr2	220406784	220406784	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	tgcgcccgtcaggaacaccaCacgctccagccggtgcccca	10	19	1	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CHPF-90	NM_024536	exon2	c.G442A	p.V148M	ACACCACACGCTC	.	91	44	4	0	.	88	44	44	0	0	T	220406784	C	T	220406784	3	4	62	1	0	0	0	0	1	0	0	0	3374	478	17	3	1897	3	CHPF	2	220406784	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	510853	220406784	22792589	272	12263										
SGPP2	130367	ucsc.edu;bcgsc.ca	37	chr2	223423173	223423173	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	agccccctcttccccgtgtgTgtcatagttgtgccattctt	8	14	3	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SGPP2-91	NM_152386	exon5	c.T756C	p.C252C	CGTGTGTGTCATA	.	383	172	287	3	.	33	12	21	0	0	C	223423173	T	C	223423173	2	2	62	1	0	0	0	0	0	0	0	1	14255	1702	59	4		4	SGPP2	2	223423173	Silent	SNP	T	TCGA-PK-A5HB-01A-11D-A29I-10	3016389	223423173	19776200	273	12264										
DOCK10	55619	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	225652093	225652093	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gagaaactccacacacatgtAtagctgctccaccaggatat	7	12	0	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	DOCK10-92	NM_014689	exon49	c.T5440C	p.Y1814H	ACATGTATAGCTG	.	115	40	93	0	.	15	9	6	0	0	G	225652093	A	G	225652093	3	3	62	1	0	0	0	0	1	0	0	0	4696	449	16	4	1152	4	DOCK10	2	225652093	Missense_Mutation	SNP	A	TCGA-PK-A5HB-01A-11D-A29I-10	2228920	225652093	17547280	274	12265										
SLC16A14	151473	hgsc.bcm.edu;bcgsc.ca	37	chr2	230911202	230911203	+	Frame_Shift_Del	DEL	GA	GA	-													0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gtcgtttgggtttttaccagGagagaggggcctcatgagcg					novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	GA	GA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SLC16A14-96	NM_152527	exon4	c.639_640del	p.213_214del	TACCAGGAGAGAG	.	98	51	71	1	.	0	0	0	0	0	-	230911203	GA	-	230911202	7	5	62	1	0	1	0	1	0	0	0	0	14442	1174	41	0	900	0	SLC16A14	2	230911202	Frame_Shift_Del	DEL	GA	TCGA-PK-A5HB-01A-11D-A29I-10	5259109	230911202	12288171	275	12266										
GIGYF2	26058	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	233651868	233651868	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ttttctttatagggagaccaAattttgaggaaggtggacca	11	5	1	2	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	GIGYF2-28	NM_001103147	exon11	c.A607C	p.N203H	AGACCAAATTTTG	.	64	31	86	0	.	0	0	0	0	0	C	233651868	A	C	233651868	3	2	62	1	0	0	0	0	1	0	0	0	6398	14	1	5	637	5	GIGYF2	2	233651868	Missense_Mutation	SNP	A	TCGA-PK-A5HB-01A-11D-A29I-10	2740666	233651868	9547505	276	12267										
INPP5D	3635	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	234091058	234091058	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gccttccctcccctgcaggcAgtaccagcgacatcatgacg	9	17	1	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	INPP5D-652	.	.	.	.	GCAGGCAGTACCA	.	254	117	182	0	.	0	0	0	0	0	G	234091058	A	G	234091058	3	3	62	1	0	0	0	0	1	0	0	0	7777	188	7	4	1656	4	INPP5D	2	234091058	Missense_Mutation	SNP	A	TCGA-PK-A5HB-01A-11D-A29I-10	439190	234091058	9108315	277	12268										
TRPM8	79054	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	234854560	234854560	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gagatccactgtatatcctgGacaacaaccacacacatttg	6	12	0	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TRPM8-94	NM_024080	exon7	c.G760A	p.D254N	ATCCTGGACAACA	.	137	61	127	1	.	0	0	0	0	0	A	234854560	G	A	234854560	3	1	62	1	0	0	0	0	1	0	0	0	16630	1174	41	3	782	3	TRPM8	2	234854560	Missense_Mutation	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	763502	234854560	8344813	278	12269										
COPS8	10920	hgsc.bcm.edu;bcgsc.ca	37	chr2	238002796	238002797	+	Frame_Shift_Ins	INS	-	-	T													0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	acttcaatcatcgccgatgaINSttttgcagcctttgttggac					novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	COPS8-228	NM_006710	exon5	c.395_396insT	p.D132fs	CCGATGATTTTGC	.	117	48	101	1	.	0	0	0	0	0	T	238002797	-	T	238002796	7	5	62	1	0	1	1	0	0	0	0	0	3746	333	12	0	413	0	COPS8	2	238002796	Frame_Shift_Ins	INS	-	TCGA-PK-A5HB-01A-11D-A29I-10	3148236	238002796	5196577	279	12270										
LRRFIP1	9208	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr2	238672429	238672431	+	In_Frame_Del	DEL	TGG	TGG	-													0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	caatcatcaggcccgagggcTggtggtgaagaattagatga					novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	TGG	TGG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	LRRFIP1-153	NM_001137552	exon11	c.2073_2075del	p.691_692del	GAGGGCTGGTGGT	.	230	78	203	0	.	0	0	0	0	0	-	238672431	TGG	-	238672429	7	5	62	1	0	1	0	1	0	0	0	0	9054	1567	55	0	2791	0	LRRFIP1	2	238672429	In_Frame_Del	DEL	TGG	TCGA-PK-A5HB-01A-11D-A29I-10	669633	238672429	4526944	280	12271										
SCLY	51540	broad.mit.edu;bcgsc.ca	37	chr2	238990850	238990850	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	cttacaatcgtggggcacaaGgtaagtctgcagaggcttcc	12	10	1	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SCLY-92	NM_016510	exon6	c.G801T	p.K267N	GCACAAGGTAAGT	.	275	109	188	2	.	0	0	0	0	0	T	238990850	G	T	238990850	3	4	62	1	0	0	0	0	1	0	0	0	13942	1014	35	3	799	3	SCLY	2	238990850	Missense_Mutation	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	318421	238990850	4208523	281	12272										
TRAF3IP1	26146	broad.mit.edu	37	chr2	239237830	239237830	+	Frame_Shift_Del	DEL	G	G	-													0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gagacagagagaaagagtgaGggggggaaagagaaggagag					novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TRAF3IP1-228	NM_015650	exon5	c.762delG	p.E254fs	GAGTGAGGGGGGG	.	308	8	238	0	.	0	0	0	0	0	-	239237830	G	-	239237830	7	5	62	1	0	1	0	1	0	0	0	0	16478	991	35	0	780	0	TRAF3IP1	2	239237830	Frame_Shift_Del	DEL	G	TCGA-PK-A5HB-01A-11D-A29I-10	246980	239237830	3961543	282	12273										
HDAC4	9759	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	240085574	240085574	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gcgccttctttttattgaggAcaaattcttgtaacttcatc	6	9	3	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	HDAC4-291	NM_006037	exon6	c.T536A	p.V179D	TTGAGGACAAATT	.	135	50	126	0	.	6	4	2	0	0	T	240085574	A	T	240085574	3	4	62	1	0	0	0	0	1	0	0	0	7030	275	10	5	2806	5	HDAC4	2	240085574	Missense_Mutation	SNP	A	TCGA-PK-A5HB-01A-11D-A29I-10	847744	240085574	3113799	283	12274										
ANKMY1	51281	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	241463346	241463346	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	cgcatggtccctttgtcgaaGctgctggtgcacggtgaggg	16	10	0	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ANKMY1-90	NM_016552	exon7	c.C1521T	p.S507S	GTCGAAGCTGCTG	.	170	78	142	0	.	9	3	6	0	0	A	241463346	G	A	241463346	2	1	62	1	0	0	0	0	0	0	0	1	634	962	34	3		3	ANKMY1	2	241463346	Silent	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	1377772	241463346	1736027	284	12275										
RNPEPL1	57140	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	241516387	241516387	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	atcctgacctccacagggtgCggcgcttcctggagagccag	13	14	0	2	rs193086300	by1000genomes	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	RNPEPL1-154	NM_018226	exon10	c.C1864T	p.R622W	AGGGTGCGGCGCT	.	195	76	117	0	C|0.999;T|0.000	113	58	55	0	0	T	241516387	C	T	241516387	3	4	62	1	0	0	0	0	1	0	0	0	13545	759	27	1	1201	1	RNPEPL1	2	241516387	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	53041	241516387	1682986	285	12276										
GPR35	2859	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	241569558	241569558	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	atctacatgaccaacctggcGgtggccgacctctgcctgct	10	15	2	1	rs201529824		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	GPR35-93	NM_001195382	exon6	c.G282A	p.A94A	CCTGGCGGTGGCC	.	97	49	58	1	G|0.999;A|0.000	0	0	0	0	0	A	241569558	G	A	241569558	2	1	62	1	0	0	0	0	0	0	0	1	6710	1103	39	1		1	GPR35	2	241569558	Silent	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	53171	241569558	1629815	286	12277										
KIF1A	547	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	241737134	241737134	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	tcccgggaattgaaggggcgGacccgcaccgccaccttcac	12	16	1	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	KIF1A-91	NM_001244008	exon2	c.C36T	p.V12V	GGGGCGGACCCGC	.	69	30	48	0	.	0	0	0	0	0	A	241737134	G	A	241737134	2	1	62	1	0	0	0	0	0	0	0	1	8304	1161	41	3		3	KIF1A	2	241737134	Silent	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	167576	241737134	1462239	287	12278										
THAP4	51078	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr2	242573029	242573029	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ccctgactgcctgccaccatGgtggccagtccatctcctgg	10	17	1	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	.	NM_015963	exon2	c.C543T	p.T181T	CACCATGGTGGCC	.	87	37	76	0	.	87	52	35	0	0	A	242573029	G	A	242573029	2	1	62	1	0	0	0	0	0	0	0	1	15883	1335	47	3		3	THAP4	2	242573029	Silent	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	835895	242573029	626344	288	12279										
D2HGDH	728294	hgsc.bcm.edu	37	chr2	242674750	242674750	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ctggcccgcagaggctgctgCtccgccccggggacccccga	14	19	0	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	.	NM_152783	exon2	c.C111T	p.C37C	CTGCTGCTCCGCC	.	52	28	5	0	.	2	2	0	0	0	T	242674750	C	T	242674750	2	4	62	1	0	0	0	0	0	0	0	1	4219	805	28	3		3	D2HGDH	2	242674750	Silent	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	101721	242674750	524623	289	12280										
SETD5	55209	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	9488930	9488930	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	tagcaactctgtttcaaatgTtaccatcccaagcaccccac	4	15	2	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SETD5-70	NM_001080517	exon14	c.T1721A	p.V574D	CAAATGTTACCAT	.	50	46	82	0	.	8	0	8	0	0	A	9488930	T	A	9488930	3	1	62	1	0	0	0	0	1	0	0	0	14169	1725	60	5	1767	5	SETD5	3	9488930	Missense_Mutation	SNP	T	TCGA-PK-A5HB-01A-11D-A29I-10		9488930	188533500	290	12281										
ANKRD28	23243	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr3	15756165	15756166	+	Splice_Site	INS	-	-	G													0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ggttttcccatctttactctINSggggggggaagaaaaaaatt					novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ANKRD28-135	NM_001195098	exon10	c.445-2->C	.	TTACTCTGGGGGG	.	17	13	56	0	.	0	0	0	0	0	G	15756166	-	G	15756165	8	5	62	1	0	1	1	0	0	0	1	0	656	1594	55	0	2336	0	ANKRD28	3	15756165	Splice_Site	INS	-	TCGA-PK-A5HB-01A-11D-A29I-10	6267235	15756165	182266265	291	12282										
RFTN1	23180	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	16475383	16475383	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ggttttcttgatcaggatggCtctaaagatgtgctccaggg	13	7	3	2	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	RFTN1-93	NM_015150	exon3	c.G307A	p.A103T	GGATGGCTCTAAA	.	101	80	162	0	.	11	10	1	0	0	T	16475383	C	T	16475383	3	4	62	1	0	0	0	0	1	0	0	0	13293	797	28	3	1461	3	RFTN1	3	16475383	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	719218	16475383	181547047	292	12283										
RBMS3	27303	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	29941226	29941226	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	cttcatggatgcctcatccgCcatacgttatgcaaccaaca	6	14	2	0	rs202069394		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	RBMS3-90	NM_001177712	exon11	c.C958T	p.P320S	CATCCGCCATACG	.	46	28	54	0	C|0.999;T|0.000	1	1	0	0	0	T	29941226	C	T	29941226	3	4	62	1	0	0	0	0	1	0	0	0	13185	739	26	3	1000	3	RBMS3	3	29941226	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	13465843	29941226	168081204	293	12284										
GADL1	339896	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	30903251	30903251	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gaatcatctcttgttgatcaAtatctcctggaagcaagcaa	7	9	4	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	GADL1-90	NM_207359	exon2	c.T44A	p.I15N	TGATCAATATCTC	.	37	27	83	0	.	0	0	0	0	0	T	30903251	A	T	30903251	3	4	62	1	0	0	0	0	1	0	0	0	6204	101	4	5	1577	5	GADL1	3	30903251	Missense_Mutation	SNP	A	TCGA-PK-A5HB-01A-11D-A29I-10	962025	30903251	167119179	294	12285										
CMTM8	152189	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	32398985	32398985	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	tcaccgtcttcttcctcattAtctacataacaatgacctac	2	14	5	1	rs141869614	alternate_allele	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CMTM8-90	NM_178868	exon2	c.A268T	p.I90F	CTCATTATCTACA	.	73	52	111	2	A|1.000;G|0.000	33	6	27	0	0	T	32398985	A	T	32398985	3	4	62	1	0	0	0	0	1	0	0	0	3595	449	16	5	274	5	CMTM8	3	32398985	Missense_Mutation	SNP	A	TCGA-PK-A5HB-01A-11D-A29I-10	1495734	32398985	165623445	295	12286										
FBXL2	25827	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	33419633	33419633	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	aagatggatcttgaagaatgCatcctggtgagtggactcct	12	7	1	4	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	FBXL2-289	NM_012157	exon12	c.C888T	p.C296C	AGAATGCATCCTG	.	65	49	105	0	.	0	0	0	0	0	T	33419633	C	T	33419633	2	4	62	1	0	0	0	0	0	0	0	1	5735	718	25	3		3	FBXL2	3	33419633	Silent	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	1020648	33419633	164602797	296	12287										
UBP1	7342	bcgsc.ca	37	chr3	33458280	33458280	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	tttccattgatctcaggcatAtcacccattttccgattatc	4	12	2	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	UBP1-537	NM_001128160	exon3	c.T312A	p.D104E	AGGCATATCACCC	.	199	144	338	5	.	0	0	0	0	0	T	33458280	A	T	33458280	3	4	62	1	0	0	0	0	1	0	0	0	16933	446	16	5	1366	5	UBP1	3	33458280	Missense_Mutation	SNP	A	TCGA-PK-A5HB-01A-11D-A29I-10	38647	33458280	164564150	297	12288										
PDCD6IP	10015	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr3	33883509	33883509	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ggaggcatccagactgttgaTcagttgattaaagaactgcc	11	8	1	4	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PDCD6IP-228	NM_001162429	exon10	c.T1317G	p.D439E	TGTTGATCAGTTG	.	265	183	409	2	.	73	7	66	0	0	G	33883509	T	G	33883509	3	3	62	1	0	0	0	0	1	0	0	0	11653	1432	50	5	1355	5	PDCD6IP	3	33883509	Missense_Mutation	SNP	T	TCGA-PK-A5HB-01A-11D-A29I-10	425229	33883509	164138921	298	12289										
MLH1	4292	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	37083763	37083763	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	tcatttttattttcagtgaaGaactgttctaccagatactc	5	8	3	3	rs63751081		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	MLH1-2559	NM_000249	exon15	c.G1672T	p.E558X	AGTGAAGAACTGT	.	44	33	73	2	.	0	0	0	0	0	T	37083763	G	T	37083763	4	4	62	1	0	0	0	0	0	1	0	0	9645	943	33	3	1730	3	MLH1	3	37083763	Nonsense_Mutation	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	3200254	37083763	160938667	299	12290										
SCN11A	11280	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	38921457	38921457	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ttacaatcacaatgatgaaaTcaaggcagcaccaggcactg	8	10	2	2	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SCN11A-99	NM_014139	exon19	c.A3377T	p.D1126V	ATGAAATCAAGGC	.	52	31	91	0	.	0	0	0	0	0	A	38921457	T	A	38921457	3	1	62	1	0	0	0	0	1	0	0	0	13948	1435	50	5	2030	5	SCN11A	3	38921457	Missense_Mutation	SNP	T	TCGA-PK-A5HB-01A-11D-A29I-10	1837694	38921457	159100973	300	12291										
ULK4	54986	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	41759264	41759264	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	caatgtgacagatgagaagaTccaggcatttggacaggtat	12	6	0	4	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ULK4-297	NM_017886	exon23	c.A2411G	p.D804G	AGAAGATCCAGGC	.	68	53	101	0	.	1	0	1	0	0	C	41759264	T	C	41759264	3	2	62	1	0	0	0	0	1	0	0	0	17016	1435	50	4	1476	4	ULK4	3	41759264	Missense_Mutation	SNP	T	TCGA-PK-A5HB-01A-11D-A29I-10	2837807	41759264	156263166	301	12292										
HHATL	57467	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	42738492	42738492	+	Splice_Site	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	cccgtcctggccagcactcaCgtttccgcaaagacgtagag	10	15	1	2	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	HHATL-93	NM_020707	exon9	c.1010+1G>A	.	CACTCACGTTTCC	.	106	86	155	0	.	0	0	0	0	0	T	42738492	C	T	42738492	5	4	62	1	0	0	0	0	0	0	1	0	7111	550	19	1	523	1	HHATL	3	42738492	Splice_Site	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	979228	42738492	155283938	302	12293										
KIAA1143	57456	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	44803069	44803069	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ccggctcggctggccgcacgTacgatacctggttccgcttg	13	15	0	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	KIAA1143-90	NM_020696	exon1	c.A26G	p.Y9C	CGCACGTACGATA	.	88	71	132	1	.	39	5	34	0	0	C	44803069	T	C	44803069	3	2	62	1	0	0	0	0	1	0	0	0	8230	1638	57	4	450	4	KIAA1143	3	44803069	Missense_Mutation	SNP	T	TCGA-PK-A5HB-01A-11D-A29I-10	2064577	44803069	153219361	303	12294										
CCR9	10803	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	45942503	45942503	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ttgttatccttgtctactggTactgcacaagagtgaagacc	9	9	1	3	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CCR9-660	NM_031200	exon3	c.T223C	p.Y75H	TACTGGTACTGCA	.	196	144	245	2	.	0	0	0	0	0	C	45942503	T	C	45942503	3	2	62	1	0	0	0	0	1	0	0	0	2954	1638	57	4	229	4	CCR9	3	45942503	Missense_Mutation	SNP	T	TCGA-PK-A5HB-01A-11D-A29I-10	1139434	45942503	152079927	304	12295										
NBEAL2	23218	ucsc.edu;bcgsc.ca	37	chr3	47041809	47041809	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	tgctcctggccgccacagctCcagtctctccaatgtgctgg	10	16	1	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	NBEAL2-69	NM_015175	exon27	c.C4220A	p.S1407Y	ACAGCTCCAGTCT	.	126	96	197	3	.	1	0	1	0	0	A	47041809	C	A	47041809	3	1	62	1	0	0	0	0	1	0	0	0	10217	855	30	3	4326	3	NBEAL2	3	47041809	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	1099306	47041809	150980621	305	12296										
KLHL18	23276	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	47378243	47378243	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	tggggagcatgaatagcaagAgaaggtattctggaagccac	14	6	1	2	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	KLHL18-90	NM_025010	exon7	c.A1117G	p.R373G	AGCAAGAGAAGGT	.	174	134	253	0	.	0	0	0	0	0	G	47378243	A	G	47378243	3	3	62	1	0	0	0	0	1	0	0	0	8394	296	11	4	1143	4	KLHL18	3	47378243	Missense_Mutation	SNP	A	TCGA-PK-A5HB-01A-11D-A29I-10	336434	47378243	150644187	306	12297										
SCAP	22937	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	47458817	47458817	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	cagccggccgctgctccgccCcaccacgatgaggttgccct	11	19	0	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SCAP-91	NM_012235	exon17	c.G2947T	p.G983W	TCCGCCCCACCAC	.	53	43	61	0	.	197	4	193	0	0	A	47458817	C	A	47458817	3	1	62	1	0	0	0	0	1	0	0	0	13912	623	22	3	920	3	SCAP	3	47458817	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	80574	47458817	150563613	307	12298										
UBA7	7318	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	49846424	49846424	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ctcaccaaactcagcagaagCcgaagccagctctagattac	7	14	3	2	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	UBA7-228	NM_003335	exon18	c.G2332C	p.A778P	CAGAAGCCGAAGC	.	76	61	133	0	.	14	3	11	0	0	G	49846424	C	G	49846424	3	3	62	1	0	0	0	0	1	0	0	0	16871	739	26	3	734	3	UBA7	3	49846424	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	2387607	49846424	148176006	308	12299										
RRP9	9136	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	51968549	51968549	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ccccacactgccaaagccgcAcacaggagctgtgggagcct	11	16	0	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	RRP9-154	NM_004704	exon13	c.T1199C	p.V400A	AGCCGCACACAGG	.	244	184	338	1	.	22	2	20	0	0	G	51968549	A	G	51968549	3	3	62	1	0	0	0	0	1	0	0	0	13726	159	6	4	240	4	RRP9	3	51968549	Missense_Mutation	SNP	A	TCGA-PK-A5HB-01A-11D-A29I-10	2122125	51968549	146053881	309	12300										
DUSP7	1849	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	52085041	52085041	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gcgtcgttgagtgacaggttCatcttctgcatcagataggc	12	9	4	3	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	DUSP7-659	NM_001947	exon3	c.G1050A	p.M350I	CAGGTTCATCTTC	.	94	73	90	0	.	5	3	2	0	0	T	52085041	C	T	52085041	3	4	62	1	0	0	0	0	1	0	0	0	4841	826	29	3	213	3	DUSP7	3	52085041	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	116492	52085041	145937389	310	12301										
DUSP7	1849	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr3	52088242	52088243	+	Frame_Shift_Ins	INS	-	-	T													0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	cactgctgggcagctctcggINStccgactcgccgtcggagca					novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	DUSP7-659	NM_001947	exon2	c.666_667insA	p.D222fs	CTCTCGGTCCGAC	.	142	105	153	0	.	0	0	0	0	0	T	52088243	-	T	52088242	7	5	62	1	0	1	1	0	0	0	0	0	4841	1252	44	0	601	0	DUSP7	3	52088242	Frame_Shift_Ins	INS	-	TCGA-PK-A5HB-01A-11D-A29I-10	3201	52088242	145934188	311	12302	140	2								
DUSP7	1849	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	chr3	52088244	52088244	+	Missense_Mutation	SNP	C	C	T													0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	actgctgggcagctctcggtCcgactcgccgtcggagcagt					novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	DUSP7-659	NM_001947	exon2	c.G664A	p.D222N	CTCGGTCCGACTC	.	144	108	156	0	.	1	1	0	0	0	T	52088244	C	T	52088244	3	4	62	1	0	0	0	0	1	0	0	0	4841	855	30	3	603	3	DUSP7	3	52088244	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	2	52088244	145934186	312	12303	140	2								
BAP1	8314	hgsc.bcm.edu;bcgsc.ca	37	chr3	52437564	52437565	+	Frame_Shift_Ins	INS	-	-	A													0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	agcaggctgtcatcctctccINSaaaaagcaccttggagatgt					novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	BAP1-1032	NM_004656	exon13	c.1597_1598insT	p.G533fs	CCTCTCCAAAAAG	.	123	97	188	1	.	0	0	0	0	0	A	52437565	-	A	52437564	7	5	62	1	0	1	1	0	0	0	0	0	1312	603	21	0	612	0	BAP1	3	52437564	Frame_Shift_Ins	INS	-	TCGA-PK-A5HB-01A-11D-A29I-10	349320	52437564	145584866	313	12304										
BAP1	8314	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	52438537	52438537	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	tagtcatcctcatcatctgaGtactgctggggtgggcggac	13	10	4	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	BAP1-1032	NM_004656	exon12	c.C1182T	p.Y394Y	ATCTGAGTACTGC	.	103	83	133	1	.	4	2	2	0	0	A	52438537	G	A	52438537	2	1	62	1	0	0	0	0	0	0	0	1	1312	1024	36	3		3	BAP1	3	52438537	Silent	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	973	52438537	145583893	314	12305										
PHF7	51533	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	52457218	52457218	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gaatccgggcctttcttggaCtgattggccagaaccttcct	10	12	1	2	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PHF7-153	NM_016483	exon11	c.C1031G	p.T344S	CTTGGACTGATTG	.	188	152	252	1	.	7	1	6	0	0	G	52457218	C	G	52457218	3	3	62	1	0	0	0	0	1	0	0	0	11868	565	20	3	1069	3	PHF7	3	52457218	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	18681	52457218	145565212	315	12306										
STAB1	23166	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	52543970	52543970	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	cacgtgtgcccctggcttcaGtggccggttctgcaacgagt	13	13	2	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	STAB1-139	NM_015136	exon23	c.G2432A	p.S811N	GCTTCAGTGGCCG	.	134	108	159	0	.	4	4	0	0	0	A	52543970	G	A	52543970	3	1	62	1	0	0	0	0	1	0	0	0	15274	1029	36	3	2522	3	STAB1	3	52543970	Missense_Mutation	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	86752	52543970	145478460	316	12307										
ABHD6	57406	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	58255106	58255106	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gccaggacatgagggcaccaCccgctcctccctggatgacc	11	17	0	2	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ABHD6-92	NM_020676	exon4	c.C335T	p.T112I	GCACCACCCGCTC	.	173	135	207	1	.	31	0	31	0	0	T	58255106	C	T	58255106	3	4	62	1	0	0	0	0	1	0	0	0	86	507	18	3	345	3	ABHD6	3	58255106	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	5711136	58255106	139767324	317	12308										
PRICKLE2	166336	broad.mit.edu	37	chr3	64133284	64133284	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	tgcttcgggaggaatggccgCcccaggagggatttcttgca	15	10	1	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PRICKLE2-95	NM_198859	exon7	c.G882A	p.G294G	TGGCCGCCCCAGG	.	81	3	105	0	.	0	0	0	0	0	T	64133284	C	T	64133284	2	4	62	1	0	0	0	0	0	0	0	1	12519	726	26	3		3	PRICKLE2	3	64133284	Silent	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	5878178	64133284	133889146	318	12309										
LRIG1	26018	hgsc.bcm.edu	37	chr3	66550756	66550756	+	Missense_Mutation	SNP	G	G	C													0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ggtcaccggctccagccgaaGcaaaagcagccagagaagga					rs1403625		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	LRIG1-230	NM_015541	exon1	c.C76G	p.L26V	GCCGAAGCAAAAG	.	5	5	0	0	G|0.237;C|0.763	0	0	0	0	0	C	66550756	G	C	66550756	3	2	62	1	0	0	0	0	1	0	0	0	8971	971	34	3	3281	3	LRIG1	3	66550756	Missense_Mutation	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	2417472	66550756	131471674	319	12310	141	2								
LRIG1	26018	hgsc.bcm.edu	37	chr3	66550762	66550762	+	Missense_Mutation	SNP	G	G	C													0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	cggctccagccgaagcaaaaGcagccagagaaggagaaggc					rs1403626	byfrequency	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	LRIG1-230	NM_015541	exon1	c.C70G	p.L24V	GCAAAAGCAGCCA	.	5	5	0	0	G|0.252;C|0.748	0	0	0	0	0	C	66550762	G	C	66550762	3	2	62	1	0	0	0	0	1	0	0	0	8971	971	34	3	3287	3	LRIG1	3	66550762	Missense_Mutation	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	6	66550762	131471668	320	12311	141	2								
CNTN3	5067	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	74548830	74548830	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ctgtaatgaggtgatggattGcctcttgcttcacaatgcaa	10	8	2	2	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CNTN3-137	NM_020872	exon2	c.C162T	p.G54G	TGGATTGCCTCTT	.	16	14	42	1	.	0	0	0	0	0	A	74548830	G	A	74548830	2	1	62	1	0	0	0	0	0	0	0	1	3648	1306	46	3		3	CNTN3	3	74548830	Silent	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	7998068	74548830	123473600	321	12312										
ROBO2	6092	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	77147394	77147394	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ttcttcttgcgcatcgtgcaCgggcgcaggagtaaacctga	12	11	2	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ROBO2-328	NM_002942	exon2	c.C291T	p.H97H	CGTGCACGGGCGC	.	246	206	333	0	.	0	0	0	0	0	T	77147394	C	T	77147394	2	4	62	1	0	0	0	0	0	0	0	1	13549	536	19	1		1	ROBO2	3	77147394	Silent	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	2598564	77147394	120875036	322	12313										
GBE1	2632	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr3	81635291	81635291	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gctagtcgatagtcaaaaccAccccctccctgggaaattgg	9	13	1	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	GBE1-25	NM_000158	exon10	c.T1287C	p.G429G	AAAACCACCCCCT	.	34	27	50	0	.	75	1	74	0	0	G	81635291	A	G	81635291	2	3	62	1	0	0	0	0	0	0	0	1	6290	146	6	4		4	GBE1	3	81635291	Silent	SNP	A	TCGA-PK-A5HB-01A-11D-A29I-10	4487897	81635291	116387139	323	12314										
ABI3BP	25890	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	100508327	100508327	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	tgtgtggcttgtcagatgttCtgggcctcacagtagtataa	12	7	3	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ABI3BP-138	NM_015429	exon24	c.G2000A	p.R667K	GATGTTCTGGGCC	.	42	40	77	2	.	4	0	4	0	0	T	100508327	C	T	100508327	3	4	62	1	0	0	0	0	1	0	0	0	91	913	32	3	1275	3	ABI3BP	3	100508327	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	18873036	100508327	97514103	324	12315										
WDR52	55779	bcgsc.ca	37	chr3	113145006	113145006	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	tccagtggtatgtttgaatcCagagtcacaaaaggcatcga	10	8	1	2	rs73239107	byfrequency	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	WDR52-90	NM_001164496	exon4	c.G372A	p.L124L	TGAATCCAGAGTC	.	118	5	159	0	C|0.832;T|0.168	0	0	0	0	0	T	113145006	C	T	113145006	2	4	62	1	0	0	0	0	0	0	0	1	17342	581	21	3		3	WDR52	3	113145006	Silent	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	12636679	113145006	84877424	325	12316										
LSAMP	4045	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	115529261	115529261	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ttcctctcaccgacccaggtCctgcagagcaaaagaggaga	10	13	1	3	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	LSAMP-90	NM_002338	exon7	c.G920A	p.R307K	CCAGGTCCTGCAG	.	130	107	186	0	.	0	0	0	0	0	T	115529261	C	T	115529261	3	4	62	1	0	0	0	0	1	0	0	0	9075	869	30	3	100	3	LSAMP	3	115529261	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	2384255	115529261	82493169	326	12317										
LRRC58	116064	hgsc.bcm.edu	37	chr3	120068007	120068007	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	cgcgcctccagctcagactcCagcgtctcggtggacacgct	11	17	2	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	.	NM_001099678	exon1	c.G84T	p.L28L	AGACTCCAGCGTC	.	6	6	0	0	.	0	0	0	0	0	A	120068007	C	A	120068007	2	1	62	1	0	0	0	0	0	0	0	1	9041	581	21	3		3	LRRC58	3	120068007	Silent	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	4538746	120068007	77954423	327	12318										
LRRC58	116064	hgsc.bcm.edu	37	chr3	120068022	120068022	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gactccagcgtctcggtggaCacgctgaggcgggaccagtt	15	12	1	1	rs6770482		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	.	NM_001099678	exon1	c.G69C	p.V23V	GGTGGACACGCTG	.	6	6	0	0	C|0.826;G|0.174	0	0	0	0	0	G	120068022	C	G	120068022	2	3	62	1	0	0	0	0	0	0	0	1	9041	465	17	3		3	LRRC58	3	120068022	Silent	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	15	120068022	77954408	328	12319										
KALRN	8997	hgsc.bcm.edu;bcgsc.ca	37	chr3	124431854	124431855	+	Frame_Shift_Ins	INS	-	-	A													0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	tggctgtgaaatttgttagcINSaaaaaaatgaagaagaaaga					novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	KALRN-738	NM_001024660	exon58	c.8148_8149insA	p.S2716fs	TGTTAGCAAAAAA	.	59	43	86	0	.	0	0	0	0	0	A	124431855	-	A	124431854	7	5	62	1	0	1	1	0	0	0	0	0	7996	709	25	0	8534	0	KALRN	3	124431854	Frame_Shift_Ins	INS	-	TCGA-PK-A5HB-01A-11D-A29I-10	4363832	124431854	73590576	329	12320										
OSBPL11	114885	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	125298757	125298757	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	agcgtttacagtgaaggtgtGagaatcctcatcactgggtg	13	7	2	2	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	OSBPL11-135	NM_022776	exon3	c.C361T	p.H121Y	AGGTGTGAGAATC	.	41	32	72	0	.	12	0	12	0	0	A	125298757	G	A	125298757	3	1	62	1	0	0	0	0	1	0	0	0	11305	1290	45	3	1926	3	OSBPL11	3	125298757	Missense_Mutation	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	866903	125298757	72723673	330	12321										
ISY1	57461	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	128853775	128853775	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gccttcatgagctcagcacgTgtctttctgggaggaggaag	14	9	4	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ISY1-90	NM_001199469	exon9	c.A507T	p.T169T	AGCACGTGTCTTT	.	38	27	88	0	.	53	11	42	0	0	A	128853775	T	A	128853775	2	1	62	1	0	0	0	0	0	0	0	1	7887	1683	59	5		5	ISY1	3	128853775	Silent	SNP	T	TCGA-PK-A5HB-01A-11D-A29I-10	3555018	128853775	69168655	331	12322										
TMCC1	23023	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	129546844	129546844	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ccctttggggcctctggcttGccccgcctactatgcaagct	10	16	1	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TMCC1-91	NM_001017395	exon3	c.C378A	p.G126G	TGGCTTGCCCCGC	.	59	41	95	1	.	7	1	6	0	0	T	129546844	G	T	129546844	2	4	62	1	0	0	0	0	0	0	0	1	16029	1306	46	3		3	TMCC1	3	129546844	Silent	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	693069	129546844	68475586	332	12323										
ATP2C1	27032	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	130720162	130720162	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	aaaagatccagaagcatgttAgttcgacatcatcatctttt	6	8	3	2	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ATP2C1-91	NM_001199181	exon27	c.A2830C	p.S944R	CATGTTAGTTCGA	.	83	60	96	1	.	30	4	26	0	0	C	130720162	A	C	130720162	3	2	62	1	0	0	0	0	1	0	0	0	1144	420	15	5	2834	5	ATP2C1	3	130720162	Missense_Mutation	SNP	A	TCGA-PK-A5HB-01A-11D-A29I-10	1173318	130720162	67302268	333	12324										
DNAJC13	23317	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	132179933	132179933	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	tagttattagttcgctcttgGacttccttacctttgccctc	6	12	1	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	DNAJC13-272	NM_015268	exon15	c.G1597A	p.D533N	CTCTTGGACTTCC	.	100	81	160	0	.	3	1	2	0	0	A	132179933	G	A	132179933	3	1	62	1	0	0	0	0	1	0	0	0	4643	1174	41	3	1651	3	DNAJC13	3	132179933	Missense_Mutation	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	1459771	132179933	65842497	334	12325										
CCRL1	51554	hgsc.bcm.edu	37	chr3	132321037	132321037	+	RNA	DEL	A	A	-													0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	acctcctccaaaaaagcaatAaaaaaaaaacaaactataat					novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CCRL1-658	.	.	.	.	AGCAATAAAAAAA	.	18	10	38	0	.	0	0	0	0	0	-	132321037	A	-	132321037	6	5	62	0	1	1	0	1	0	0	0	0	2955	377	13	0		0	CCRL1	3	132321037	RNA	DEL	A	TCGA-PK-A5HB-01A-11D-A29I-10	141104	132321037	65701393	335	12326										
TF	7018	ucsc.edu;bcgsc.ca	37	chr3	133467410	133467410	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	aagaaagcctcctaccttgaTtgcatcagggccattgcggt	10	11	1	2	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TF-92	NM_001063	exon2	c.T198A	p.D66E	CCTTGATTGCATC	.	216	165	299	2	.	0	0	0	0	0	A	133467410	T	A	133467410	3	1	62	1	0	0	0	0	1	0	0	0	15822	1490	52	5	204	5	TF	3	133467410	Missense_Mutation	SNP	T	TCGA-PK-A5HB-01A-11D-A29I-10	1146373	133467410	64555020	336	12327										
TSC22D2	9819	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr3	150127417	150127417	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	acctcctcctagatgggcagCtggcagcggcggctgctgct	14	14	0	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TSC22D2-91	NM_014779	exon1	c.C280A	p.L94M	GGGCAGCTGGCAG	.	67	54	93	0	.	0	0	0	0	0	A	150127417	C	A	150127417	3	1	62	1	0	0	0	0	1	0	0	0	16646	796	28	3	282	3	TSC22D2	3	150127417	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	16660007	150127417	47895013	337	12328										
CCNL1	57018	hgsc.bcm.edu;mdanderson.org	37	chr3	156877880	156877880	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	tgtcgaatgaggcccggacgCcatagtcttagcgagccgca	13	12	1	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CCNL1-659	NM_020307	exon1	c.G4A	p.A2T	CGGACGCCATAGT	.	38	30	8	0	.	9	0	9	0	0	T	156877880	C	T	156877880	3	4	62	1	0	0	0	0	1	0	0	0	2937	739	26	3	1620	3	CCNL1	3	156877880	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	6750463	156877880	41144550	338	12329										
SLITRK3	22865	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	164905717	164905717	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	tgttgtcttctccaggacttCgaggtaatccggcttggttt	11	9	2	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SLITRK3-100	NM_014926	exon2	c.G2902A	p.E968K	GGACTTCGAGGTA	.	73	55	130	1	.	0	0	0	0	0	T	164905717	C	T	164905717	3	4	62	1	0	0	0	0	1	0	0	0	14779	893	31	1	35	1	SLITRK3	3	164905717	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	8027837	164905717	33116713	339	12330										
PDCD10	11235	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	167414893	167414893	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	cataatgatgtcttgtgtgaGacctggattttctttttcag	9	6	3	2	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PDCD10-659	NM_145860	exon4	c.C172G	p.L58V	GTGTGAGACCTGG	.	15	10	39	0	.	16	1	15	0	0	C	167414893	G	C	167414893	3	2	62	1	0	0	0	0	1	0	0	0	11645	942	33	3	486	3	PDCD10	3	167414893	Missense_Mutation	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	2509176	167414893	30607537	340	12331										
LRRC34	151827	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	169514632	169514632	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	catgcttacacatgtgtagtGcaacaagacagtgattttct	8	8	1	2	rs201395437		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	LRRC34-90	NM_001172779	exon8	c.C809T	p.A270V	TGTAGTGCAACAA	.	70	52	167	0	G|0.999;A|0.001	1	1	0	0	0	A	169514632	G	A	169514632	3	1	62	1	0	0	0	0	1	0	0	0	9016	1319	46	3	623	3	LRRC34	3	169514632	Missense_Mutation	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	2099739	169514632	28507798	341	12332										
GHSR	2693	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	172165571	172165571	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ctggacacccacaccatgacCgtgagcagtccagagcgcac	10	16	0	3	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	GHSR-501	NM_198407	exon1	c.G633T	p.T211T	CATGACCGTGAGC	.	121	95	210	1	.	0	0	0	0	0	A	172165571	C	A	172165571	2	1	62	1	0	0	0	0	0	0	0	1	6395	639	23	2		2	GHSR	3	172165571	Silent	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	2650939	172165571	25856859	342	12333										
NAALADL2	254827	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	175165096	175165096	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gcacccctcgttgcaaaactGatctcttcgccaaaagctag	7	14	1	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	NAALADL2-47	NM_207015	exon6	c.G1170T	p.L390L	AAAACTGATCTCT	.	48	39	60	0	.	4	0	4	0	0	T	175165096	G	T	175165096	2	4	62	1	0	0	0	0	0	0	0	1	10158	1277	45	3		3	NAALADL2	3	175165096	Silent	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	2999525	175165096	22857334	343	12334										
ATP11B	23200	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	182538053	182538053	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	cttgattggtcttagggtttTgacccaccacatcagagtga	10	9	2	4	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ATP11B-93	NM_014616	exon2	c.T33C	p.F11F	GGGTTTTGACCCA	.	62	52	80	0	.	0	0	0	0	0	C	182538053	T	C	182538053	2	2	62	1	0	0	0	0	0	0	0	1	1121	1809	63	4		4	ATP11B	3	182538053	Silent	SNP	T	TCGA-PK-A5HB-01A-11D-A29I-10	7372957	182538053	15484377	344	12335										
ALG3	10195	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	183962454	183962454	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gccaaactgtgtgaggagaaGaaacagtaacccaggggcga	14	8	0	3	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	.	NM_005787	exon5	c.C661T	p.L221F	GGAGAAGAAACAG	.	26	18	43	1	.	64	4	60	0	0	A	183962454	G	A	183962454	3	1	62	1	0	0	0	0	1	0	0	0	520	942	33	3	675	3	ALG3	3	183962454	Missense_Mutation	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	1424401	183962454	14059976	345	12336										
EIF4G1	1981	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr3	184049834	184049834	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	aaggagctacaggcgctctaCgccctccaggcccttgtagt	11	14	1	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	EIF4G1-344	NM_001194946	exon33	c.C4599T	p.Y1533Y	GCTCTACGCCCTC	.	114	6	185	0	.	287	267	19	0	1	T	184049834	C	T	184049834	2	4	62	1	0	0	0	0	0	0	0	1	5049	547	19	1		1	EIF4G1	3	184049834	Silent	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	87380	184049834	13972596	346	12337										
POLR2H	5437	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	184083008	184083008	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	caaccccactgatgataggcCttccaggtgagggagtggag	14	10	0	3	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	POLR2H-90	NM_006232	exon3	c.C245T	p.P82L	ATAGGCCTTCCAG	.	101	76	206	0	.	1	0	1	0	0	T	184083008	C	T	184083008	3	4	62	1	0	0	0	0	1	0	0	0	12250	681	24	3	255	3	POLR2H	3	184083008	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	33174	184083008	13939422	347	12338										
FGF12	2257	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr3	192053209	192053209	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gaggctagccttcactccttGgatggccactacacgcaggc	11	14	1	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	FGF12-949	NM_021032	exon3	c.C355T	p.Q119X	CTCCTTGGATGGC	.	167	136	200	0	.	0	0	0	0	0	A	192053209	G	A	192053209	4	1	62	1	0	0	0	0	0	1	0	0	5860	1357	47	3	388	3	FGF12	3	192053209	Nonsense_Mutation	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	7970201	192053209	5969221	348	12339										
ATP13A3	79572	bcgsc.ca	37	chr3	194162115	194162115	+	Nonsense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	tcaatttttgtaagtgaatgAcaagtagccatacaagcaac	7	7	1	2	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ATP13A3-69	NM_024524	exon15	c.T1635A	p.C545X	TGAATGACAAGTA	.	108	74	234	5	.	1	0	1	0	0	T	194162115	A	T	194162115	4	4	62	1	0	0	0	0	0	1	0	0	1126	273	10	5	2117	5	ATP13A3	3	194162115	Nonsense_Mutation	SNP	A	TCGA-PK-A5HB-01A-11D-A29I-10	2108906	194162115	3860315	349	12340										
MUC4	4585	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr3	195511828	195511828	+	Frame_Shift_Del	DEL	G	G	-													0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	aagggctggtgacaggaagaGgggtggcctgacctgtggat					novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	MUC4-90	NM_018406	exon2	c.6623delC	p.P2208fs	GGAAGAGGGGTGG	.	415	76	521	0	.	0	0	0	0	0	-	195511828	G	-	195511828	7	5	62	1	0	1	0	1	0	0	0	0	10006	1000	35	0		0	MUC4	3	195511828	Frame_Shift_Del	DEL	G	TCGA-PK-A5HB-01A-11D-A29I-10	1349713	195511828	2510602	350	12341										
PIGG	54872	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	527709	527709	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	tcctgacagcgtttgggacgTacgcagggcctgtgctgtgg	16	10	0	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PIGG-92	NM_001127178	exon12	c.T2674C	p.Y892H	GGGACGTACGCAG	.	301	112	206	0	.	50	23	27	0	0	C	527709	T	C	527709	3	2	62	1	0	0	0	0	1	0	0	0	11917	1638	57	4	2720	4	PIGG	4	527709	Missense_Mutation	SNP	T	TCGA-PK-A5HB-01A-11D-A29I-10		527709	190626567	351	12342										
IDUA	3425	broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr4	996231	996231	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	cgccgcacgtgcagctgttgCgcaagccggtgctcacggcc	14	16	1	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	IDUA-91	NM_000203	exon8	c.C1147T	p.R383C	CTGTTGCGCAAGC	.	183	87	36	1	.	8	4	4	0	0	T	996231	C	T	996231	3	4	62	1	0	0	0	0	1	0	0	0	7525	768	27	1	1177	1	IDUA	4	996231	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	468522	996231	190158045	352	12343										
SPON2	10417	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	1164348	1164348	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	aggagttggccgggtggctgGgagaggaggacgttatctgg	21	5	1	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SPON2-90	NM_012445	exon5	c.C653T	p.P218L	TGGCTGGGAGAGG	.	119	47	88	0	.	13	13	0	0	0	A	1164348	G	A	1164348	3	1	62	1	0	0	0	0	1	0	0	0	15120	1232	43	3	350	3	SPON2	4	1164348	Missense_Mutation	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	168117	1164348	189989928	353	12344										
CRIPAK	285464	hgsc.bcm.edu	37	chr4	1388974	1388974	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	cgcctgctcacacgtgccgaTgcggagtgcccgcctgctca	12	17	2	0	rs71614969	bycluster	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CRIPAK-90	NM_175918	exon1	c.T675C	p.D225D	TGCCGATGCGGAG	.	37	15	3	0	C|1.000;|0.000	13	2	11	0	0	C	1388974	T	C	1388974	2	2	62	1	0	0	0	0	0	0	0	1	3883	1461	51	4		4	CRIPAK	4	1388974	Silent	SNP	T	TCGA-PK-A5HB-01A-11D-A29I-10	224626	1388974	189765302	354	12345										
TNIP2	79155	hgsc.bcm.edu	37	chr4	2757800	2757800	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	tcgcagctgctcccggaagcGcgcaacctgctccagcagcg	12	17	0	0	rs74548850	byfrequency	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TNIP2-90	NM_024309	exon1	c.C217G	p.R73G	GGAAGCGCGCAAC	.	25	16	0	0	G|0.957;C|0.043	10	8	2	0	0	C	2757800	G	C	2757800	3	2	62	1	0	0	0	0	1	0	0	0	16352	1087	38	2	1096	2	TNIP2	4	2757800	Missense_Mutation	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	1368826	2757800	188396476	355	12346										
NOP14	8602	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	2948138	2948138	+	Splice_Site	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	cctagactgaactctgcttaCcacatccaaccctggcaatg	6	15	1	2	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	NOP14-91	NM_003703	exon12	c.1635+1G>T	.	TGCTTACCACATC	.	99	57	64	1	.	7	0	7	0	0	A	2948138	C	A	2948138	5	1	62	1	0	0	0	0	0	0	1	0	10565	521	18	3	969	3	NOP14	4	2948138	Splice_Site	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	190338	2948138	188206138	356	12347										
HTT	3064	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	3137678	3137678	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	agaaaacttacacagaggggCtcatcattatacaggggtaa	10	7	2	2	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	HTT-281	NM_002111	exon20	c.C2681T	p.A894V	GAGGGGCTCATCA	.	152	45	142	0	.	9	5	4	0	0	T	3137678	C	T	3137678	3	4	62	1	0	0	0	0	1	0	0	0	7478	797	28	3	2759	3	HTT	4	3137678	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	189540	3137678	188016598	357	12348										
HTT	3064	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	3240681	3240681	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ctgcttctttgtcagcgcgtCcaccagcccgtgggtcgcgg	13	15	2	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	HTT-281	NM_002111	exon66	c.C9191T	p.S3064F	GCGCGTCCACCAG	.	129	60	82	0	.	72	38	34	0	0	T	3240681	C	T	3240681	3	4	62	1	0	0	0	0	1	0	0	0	7478	855	30	3	9453	3	HTT	4	3240681	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	103003	3240681	187913595	358	12349										
DOK7	285489	hgsc.bcm.edu	37	chr4	3495047	3495047	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gtccgccgggtgtccctctgGctggctgggcacgagacggc	17	14	1	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	DOK7-91	NM_173660	exon7	c.G1334A	p.G445D	CCTCTGGCTGGCT	.	52	19	2	0	.	0	0	0	0	0	A	3495047	G	A	3495047	3	1	62	1	0	0	0	0	1	0	0	0	4713	1203	42	3	1360	3	DOK7	4	3495047	Missense_Mutation	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	254366	3495047	187659229	359	12350										
ADRA2C	152	bcgsc.ca	37	chr4	3768889	3768889	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	cggccgtcatctccttcccgCcgctggtctcgctctaccgc	9	20	4	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ADRA2C-522	NM_000683	exon1	c.C556T	p.P186S	TTCCCGCCGCTGG	.	139	55	55	2	.	9	2	7	0	0	T	3768889	C	T	3768889	3	4	62	1	0	0	0	0	1	0	0	0	339	739	26	3	558	3	ADRA2C	4	3768889	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	273842	3768889	187385387	360	12351										
OTOP1	133060	hgsc.bcm.edu	37	chr4	4228456	4228456	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gctggcgcgcacaccgccccGccggggggccggggattccg	18	17	0	0	rs73191872	bycluster;by1000genomes	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	OTOP1-92	NM_177998	exon1	c.C136A	p.R46R	CGCCCCGCCGGGG	.	100	29	6	0	.	0	0	0	0	0	T	4228456	G	T	4228456	2	4	62	1	0	0	0	0	0	0	0	1	11334	1086	38	2		2	OTOP1	4	4228456	Silent	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	459567	4228456	186925820	361	12352										
OTOP1	133060	hgsc.bcm.edu	37	chr4	4228472	4228472	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ccccgccggggggccggggaTtccggggacctcggggccga	20	15	0	0	rs76810534		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	OTOP1-92	NM_177998	exon1	c.A120G	p.E40E	CGGGGATTCCGGG	.	69	17	4	0	.	0	0	0	0	0	C	4228472	T	C	4228472	2	2	62	1	0	0	0	0	0	0	0	1	11334	1490	52	4		4	OTOP1	4	4228472	Silent	SNP	T	TCGA-PK-A5HB-01A-11D-A29I-10	16	4228472	186925804	362	12353										
CCDC96	257236	hgsc.bcm.edu	37	chr4	7044357	7044357	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	tgggcgggctcctcagccccAacctcggccggctcttcggg	14	17	2	0	rs871133		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CCDC96-90	NM_153376	exon1	c.T309C	p.V103V	AGCCCCAACCTCG	.	5	5	0	0	A|0.036;G|0.964	1	0	1	0	0	G	7044357	A	G	7044357	2	3	62	1	0	0	0	0	0	0	0	1	2880	117	5	4		4	CCDC96	4	7044357	Silent	SNP	A	TCGA-PK-A5HB-01A-11D-A29I-10	2815885	7044357	184109919	363	12354										
CCDC96	257236	hgsc.bcm.edu	37	chr4	7044380	7044380	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ctcggccggctcttcgggctCgggctggggctcggccggcc	18	16	1	0	rs871134		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CCDC96-90	NM_153376	exon1	c.G286A	p.E96K	CGGGCTCGGGCTG	.	4	4	0	0	C|0.472;T|0.528	0	0	0	0	0	T	7044380	C	T	7044380	3	4	62	1	0	0	0	0	1	0	0	0	2880	893	31	1	1385	1	CCDC96	4	7044380	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	23	7044380	184109896	364	12355										
GPR78	27201	hgsc.bcm.edu	37	chr4	8583357	8583357	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	accatgaaggcgctcgcgctGctcgccgacctgcaccccag	11	18	0	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	GPR78-516	NM_080819	exon1	c.G648A	p.L216L	CGCGCTGCTCGCC	.	41	12	10	0	.	0	0	0	0	0	A	8583357	G	A	8583357	2	1	62	1	0	0	0	0	0	0	0	1	6730	1306	46	3		3	GPR78	4	8583357	Silent	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	1538977	8583357	182570919	365	12356										
HS3ST1	9957	broad.mit.edu	37	chr4	11401093	11401093	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	acattgagcctgccatcgcgCaccaggaactcctcgatgga	10	14	0	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	HS3ST1-91	NM_005114	exon2	c.G537A	p.V179V	ATCGCGCACCAGG	.	201	6	185	1	.	0	0	0	0	0	T	11401093	C	T	11401093	2	4	62	1	0	0	0	0	0	0	0	1	7384	697	25	3		3	HS3ST1	4	11401093	Silent	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	2817736	11401093	179753183	366	12357										
LAP3	51056	hgsc.bcm.edu;bcgsc.ca	37	chr4	17585226	17585226	+	Frame_Shift_Del	DEL	A	A	-													0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	tgaatacgatgacctaaagcAaaaaaagaagatggctgtgt					novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	LAP3-90	NM_015907	exon5	c.500delA	p.Q167fs	TAAAGCAAAAAAA	.	217	101	154	2	.	0	0	0	0	0	-	17585226	A	-	17585226	7	5	62	1	0	1	0	1	0	0	0	0	8645	130	5	0	518	0	LAP3	4	17585226	Frame_Shift_Del	DEL	A	TCGA-PK-A5HB-01A-11D-A29I-10	6184133	17585226	173569050	367	12358										
KCNIP4	80333	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	20731736	20731736	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	tttcaaagagctgcatggagCgcattatgttttcatcctgt	9	8	2	1	rs149977507		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	KCNIP4-91	NM_025221	exon8	c.G662A	p.R221H	ATGGAGCGCATTA	.	93	37	93	0	C|1.000;T|0.000	1	1	0	0	0	T	20731736	C	T	20731736	3	4	62	1	0	0	0	0	1	0	0	0	8063	768	27	1	34	1	KCNIP4	4	20731736	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	3146510	20731736	170422540	368	12359										
ARAP2	116984	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	36214032	36214032	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	tcataccttgatttgatgatAaaagagtttgttgcagtagc	9	5	1	4	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ARAP2-93	NM_015230	exon5	c.T1119C	p.F373F	GATGATAAAAGAG	.	48	18	63	0	.	0	0	0	0	0	G	36214032	A	G	36214032	2	3	62	1	0	0	0	0	0	0	0	1	839	359	13	4		4	ARAP2	4	36214032	Silent	SNP	A	TCGA-PK-A5HB-01A-11D-A29I-10	15482296	36214032	154940244	369	12360										
TBC1D1	23216	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	38119794	38119794	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gcctcacagttcccgctgggAttcgtagccagagtctttgg	12	12	2	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TBC1D1-91	NM_015173	exon17	c.A2943T	p.G981G	GCTGGGATTCGTA	.	105	41	68	0	.	19	13	6	0	0	T	38119794	A	T	38119794	2	4	62	1	0	0	0	0	0	0	0	1	15634	320	12	5		5	TBC1D1	4	38119794	Silent	SNP	A	TCGA-PK-A5HB-01A-11D-A29I-10	1905762	38119794	153034482	370	12361										
LIAS	11019	hgsc.bcm.edu;bcgsc.ca	37	chr4	39466916	39466916	+	Frame_Shift_Del	DEL	G	G	-													0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	tgtttctagatatgcctgatGggggagctgaacacattgca					novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	LIAS-90	NM_194451	exon6	c.562delG	p.G188fs	CCTGATGGGGGAG	.	131	55	115	0	.	0	0	0	0	0	-	39466916	G	-	39466916	7	5	62	1	0	1	0	1	0	0	0	0	8801	1348	47	0	584	0	LIAS	4	39466916	Frame_Shift_Del	DEL	G	TCGA-PK-A5HB-01A-11D-A29I-10	1347122	39466916	151687360	371	12362										
PDS5A	23244	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	39868540	39868540	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	aacatcgctgataataaccgAagggttgaattggcagattt	10	6	0	3	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	.	NM_001100399	exon23	c.T2583C	p.L861L	TAACCGAAGGGTT	.	89	32	103	0	.	55	39	16	0	0	G	39868540	A	G	39868540	2	3	62	1	0	0	0	0	0	0	0	1	11720	233	9	4		4	PDS5A	4	39868540	Silent	SNP	A	TCGA-PK-A5HB-01A-11D-A29I-10	401624	39868540	151285736	372	12363										
CHRNA9	55584	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	40339332	40339332	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	acgatggcctagactccatcAggatccccagtgacctcgtg	10	14	1	2	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CHRNA9-96	NM_017581	exon3	c.A316C	p.R106R	TCCATCAGGATCC	.	156	62	154	1	.	0	0	0	0	0	C	40339332	A	C	40339332	2	2	62	1	0	0	0	0	0	0	0	1	3395	179	7	5		5	CHRNA9	4	40339332	Silent	SNP	A	TCGA-PK-A5HB-01A-11D-A29I-10	470792	40339332	150814944	373	12364										
CWH43	80157	hgsc.bcm.edu;bcgsc.ca	37	chr4	49009291	49009291	+	Frame_Shift_Del	DEL	A	A	-													0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	cttgacttgcttcttcaaacAaaaaacagttctaaagtgct					novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CWH43-93	NM_025087	exon8	c.1134delA	p.T378fs	TCAAACAAAAAAC	.	90	32	99	2	.	0	0	0	0	0	-	49009291	A	-	49009291	7	5	62	1	0	1	0	1	0	0	0	0	4079	117	5	0	1164	0	CWH43	4	49009291	Frame_Shift_Del	DEL	A	TCGA-PK-A5HB-01A-11D-A29I-10	8669959	49009291	142144985	374	12365										
PDGFRA	5156	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	55153648	55153648	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	agagcatctttgacaacctcTacaccacactgagtgatgtc	7	12	2	4	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PDGFRA-9497	NM_006206	exon19	c.T2614G	p.Y872D	AACCTCTACACCA	.	185	85	143	0	.	0	0	0	0	0	G	55153648	T	G	55153648	3	3	62	1	0	0	0	0	1	0	0	0	11690	1522	53	5	2684	5	PDGFRA	4	55153648	Missense_Mutation	SNP	T	TCGA-PK-A5HB-01A-11D-A29I-10	6144357	55153648	136000628	375	12366										
SRP72	6731	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	57357651	57357651	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	tctctaaaagtagatgttgaGgctcttgaaaattctgctgg	10	6	3	3	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SRP72-116	NM_006947	exon16	c.G1557T	p.E519D	TGTTGAGGCTCTT	.	159	60	126	0	.	75	35	40	0	0	T	57357651	G	T	57357651	3	4	62	1	0	0	0	0	1	0	0	0	15194	991	35	3	1619	3	SRP72	4	57357651	Missense_Mutation	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	2204003	57357651	133796625	376	12367										
IGFBP7	3490	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr4	57907052	57907052	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	acagctcaagtacacctgggCaccagtgacattccagatgt	9	12	1	2	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	IGFBP7-522	NM_001553	exon2	c.G523A	p.A175T	CCTGGGCACCAGT	.	147	63	141	0	.	1724	1722	1	0	1	T	57907052	C	T	57907052	3	4	62	1	0	0	0	0	1	0	0	0	7605	710	25	3	341	3	IGFBP7	4	57907052	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	549401	57907052	133247224	377	12368										
CENPC1	1060	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	68380317	68380317	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ggcaaaactttgatccgactCatcaattataaattcatcct	4	10	3	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CENPC1-205	NM_001812	exon8	c.G919T	p.E307X	CCGACTCATCAAT	.	70	25	71	0	.	7	5	2	0	0	A	68380317	C	A	68380317	4	1	62	1	0	0	0	0	0	1	0	0	3235	835	29	3	1960	3	CENPC1	4	68380317	Nonsense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	10473265	68380317	122773959	378	12369										
UBA6	55236	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	68530972	68530972	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	atgtaaatatggttccagttCtgtggtgtcaccaatactaa	8	7	2	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	UBA6-90	NM_018227	exon10	c.G832A	p.E278K	CCAGTTCTGTGGT	.	173	66	163	0	.	25	11	14	0	0	T	68530972	C	T	68530972	3	4	62	1	0	0	0	0	1	0	0	0	16870	922	32	3	2422	3	UBA6	4	68530972	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	150655	68530972	122623304	379	12370										
TMPRSS11E	28983	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	69343139	69343139	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ttggagtaacaataaaacctTcgaaaatgaaacggggtctc	9	7	1	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TMPRSS11E-70	NM_014058	exon8	c.T760C	p.S254P	AAACCTTCGAAAA	.	204	96	186	0	.	0	0	0	0	0	C	69343139	T	C	69343139	3	2	62	1	0	0	0	0	1	0	0	0	16279	1783	62	4	790	4	TMPRSS11E	4	69343139	Missense_Mutation	SNP	T	TCGA-PK-A5HB-01A-11D-A29I-10	812167	69343139	121811137	380	12371										
UGT2B10	7365	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	69682216	69682216	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	accctgtggtgagctgctggCtgagctatttaacataccct	10	11	0	2	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	UGT2B10-65	.	.	.	.	TGCTGGCTGAGCT	.	409	181	305	2	.	0	0	0	0	0	T	69682216	C	T	69682216	3	4	62	1	0	0	0	0	1	0	0	0	16994	797	28	3	481	3	UGT2B10	4	69682216	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	339077	69682216	121472060	381	12372										
ODAM	54959	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	71068483	71068483	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ttctctgtagtcaacaggagAagagataccatatttacaaa	7	7	2	2	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ODAM-134	NM_017855	exon9	c.A659G	p.E220G	CAGGAGAAGAGAT	.	185	76	141	1	.	0	0	0	0	0	G	71068483	A	G	71068483	3	3	62	1	0	0	0	0	1	0	0	0	10853	246	9	4	693	4	ODAM	4	71068483	Missense_Mutation	SNP	A	TCGA-PK-A5HB-01A-11D-A29I-10	1386267	71068483	120085793	382	12373										
ADAMTS3	9508	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	73148985	73148985	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	aaggaagcagcagccatttgTgaagctgaactgaggtggac	14	7	0	3	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ADAMTS3-651	NM_014243	exon22	c.A3486G	p.S1162S	CATTTGTGAAGCT	.	136	51	108	0	.	0	0	0	0	0	C	73148985	T	C	73148985	2	2	62	1	0	0	0	0	0	0	0	1	267	1683	59	4		4	ADAMTS3	4	73148985	Silent	SNP	T	TCGA-PK-A5HB-01A-11D-A29I-10	2080502	73148985	118005291	383	12374										
AFP	174	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	74303978	74303978	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gatgcattgactgcaattgaGaaacccactggagatgaaca	10	8	0	4	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	AFP-91	NM_001134	exon3	c.G225A	p.E75E	AATTGAGAAACCC	.	74	25	63	0	.	0	0	0	0	0	A	74303978	G	A	74303978	2	1	62	1	0	0	0	0	0	0	0	1	363	933	33	3		3	AFP	4	74303978	Silent	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	1154993	74303978	116850298	384	12375										
MTHFD2L	441024	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	75041061	75041061	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ggaagaacttttggacgtaaCtgatcaattgaatatggacc	10	6	1	3	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	MTHFD2L-91	NM_001144978	exon3	c.C392G	p.T131S	ACGTAACTGATCA	.	160	72	114	1	.	3	0	3	0	0	G	75041061	C	G	75041061	3	3	62	1	0	0	0	0	1	0	0	0	9958	565	20	3	402	3	MTHFD2L	4	75041061	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	737083	75041061	116113215	385	12376										
SHROOM3	57619	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	77692038	77692038	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	cggccttggtgaagatgccaGtaatgaagaaagggtaggtg	16	5	0	4	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SHROOM3-93	NM_020859	exon10	c.G5609A	p.S1870N	ATGCCAGTAATGA	.	276	112	195	2	.	0	0	0	0	0	A	77692038	G	A	77692038	3	1	62	1	0	0	0	0	1	0	0	0	14330	1029	36	3	5647	3	SHROOM3	4	77692038	Missense_Mutation	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	2650977	77692038	113462238	386	12377										
FRAS1	80144	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	79258865	79258865	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	aggcagtgtcatgggccgttGgagtctgactgcatctcctg	14	10	3	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	FRAS1-68	NM_001166133	exon20	c.G2316C	p.L772F	GCCGTTGGAGTCT	.	334	136	230	0	.	0	0	0	0	0	C	79258865	G	C	79258865	3	2	62	1	0	0	0	0	1	0	0	0	6061	1339	47	3	2394	3	FRAS1	4	79258865	Missense_Mutation	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	1566827	79258865	111895411	387	12378										
BMP2K	55589	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	79832494	79832494	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	tatcccaaaagtgtagatgtAtttggctccactccatttca	6	10	1	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	BMP2K-383	NM_198892	exon16	c.A2793T	p.V931V	AGATGTATTTGGC	.	565	211	536	1	.	20	10	10	0	0	T	79832494	A	T	79832494	2	4	62	1	0	0	0	0	0	0	0	1	1461	436	16	5		5	BMP2K	4	79832494	Silent	SNP	A	TCGA-PK-A5HB-01A-11D-A29I-10	573629	79832494	111321782	388	12379										
SEC31A	22872	bcgsc.ca	37	chr4	83795857	83795857	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ggactggctgatgctaaaatAtgctgaacttgtctgttcca	10	8	1	2	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SEC31A-268	NM_001077206	exon6	c.T546A	p.H182Q	TAAAATATGCTGA	.	40	10	52	0	.	42	12	30	0	0	T	83795857	A	T	83795857	3	4	62	1	0	0	0	0	1	0	0	0	14033	446	16	5	3204	5	SEC31A	4	83795857	Missense_Mutation	SNP	A	TCGA-PK-A5HB-01A-11D-A29I-10	3963363	83795857	107358419	389	12380										
HELQ	113510	bcgsc.ca	37	chr4	84362474	84362474	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ttaccttataattaagaagaCgtgaaaaagtcatgccattc	6	7	1	3	rs142206532	byfrequency	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	HELQ-155	NM_133636	exon7	c.G1646A	p.R549H	AGAAGACGTGAAA	.	201	79	175	4	C|0.994;T|0.006	9	3	6	0	0	T	84362474	C	T	84362474	3	4	62	1	0	0	0	0	1	0	0	0	7068	536	19	1	1707	1	HELQ	4	84362474	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	566617	84362474	106791802	390	12381										
PTPN13	5783	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	87643506	87643506	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ctatatccaggagacacaatCaaagcgtccatgcttgacat	7	11	1	2	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PTPN13-230	NM_006264	exon10	c.C1527T	p.I509I	CACAATCAAAGCG	.	494	214	368	0	.	5	1	4	0	0	T	87643506	C	T	87643506	2	4	62	1	0	0	0	0	0	0	0	1	12815	816	29	3		3	PTPN13	4	87643506	Silent	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	3281032	87643506	103510770	391	12382										
PTPN13	5783	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	87643549	87643549	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ccagggatccgttaagagaaAttgccctagaaacagccatg	10	10	0	2	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PTPN13-230	NM_006264	exon10	c.A1570G	p.I524V	AGAGAAATTGCCC	.	446	172	339	0	.	3	2	1	0	0	G	87643549	A	G	87643549	3	3	62	1	0	0	0	0	1	0	0	0	12815	101	4	4	1604	4	PTPN13	4	87643549	Missense_Mutation	SNP	A	TCGA-PK-A5HB-01A-11D-A29I-10	43	87643549	103510727	392	12383										
DSPP	1834	broad.mit.edu;ucsc.edu	37	chr4	88537441	88537441	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gatagtagtgatagcagtgaCagcagtgacagcagcgacag	14	7	0	3	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	DSPP-90	NM_014208	exon5	c.C3627T	p.D1209D	CAGTGACAGCAGT	.	920	130	687	2	.	0	0	0	0	0	T	88537441	C	T	88537441	2	4	62	1	0	0	0	0	0	0	0	1	4793	477	17	3		3	DSPP	4	88537441	Silent	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	893892	88537441	102616835	393	12384										
FAM13A	10144	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	89679992	89679992	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ctcctggtcaccggcatcttGatttctctgctgtttggtgt	10	11	3	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	FAM13A-70	NM_014883	exon14	c.C1639T	p.Q547X	CATCTTGATTTCT	.	146	58	93	0	.	4	4	0	0	0	A	89679992	G	A	89679992	4	1	62	1	0	0	0	0	0	1	0	0	5468	1299	45	3	1476	3	FAM13A	4	89679992	Nonsense_Mutation	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	1142551	89679992	101474284	394	12385										
GRID2	2895	ucsc.edu;bcgsc.ca	37	chr4	94436526	94436526	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	aaccgaagcaatggatcggaGaacaatgttctggagtccca	11	9	1	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	GRID2-159	NM_001510	exon13	c.G2157A	p.E719E	ATCGGAGAACAAT	.	192	73	177	3	.	0	0	0	0	0	A	94436526	G	A	94436526	2	1	62	1	0	0	0	0	0	0	0	1	6793	933	33	3		3	GRID2	4	94436526	Silent	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	4756534	94436526	96717750	395	12386										
GRID2	2895	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	94547465	94547465	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	tatgggatgcagctgtattgGaatatgtggctatcaatgac	12	5	1	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	GRID2-159	NM_001510	exon14	c.G2239A	p.E747K	GTATTGGAATATG	.	119	50	93	0	.	0	0	0	0	0	A	94547465	G	A	94547465	3	1	62	1	0	0	0	0	1	0	0	0	6793	1175	41	3	2293	3	GRID2	4	94547465	Missense_Mutation	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	110939	94547465	96606811	396	12387										
PDLIM5	10611	ucsc.edu;bcgsc.ca	37	chr4	95496845	95496845	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	tcacttccacaaacaacatgGcctacaataaggcaccacgg	6	14	1	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PDLIM5-117	NM_006457	exon5	c.G370A	p.A124T	AACATGGCCTACA	.	303	123	291	4	.	7	6	1	0	0	A	95496845	G	A	95496845	3	1	62	1	0	0	0	0	1	0	0	0	11712	1203	42	3	384	3	PDLIM5	4	95496845	Missense_Mutation	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	949380	95496845	95657431	397	12388										
ADH7	131	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	100349715	100349715	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	agttgcctcatgtcccacaaTcactggaaacttggacacca	7	13	2	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ADH7-227	NM_001166504	exon3	c.A253T	p.I85F	CCACAATCACTGG	.	132	51	96	0	.	0	0	0	0	0	A	100349715	T	A	100349715	3	1	62	1	0	0	0	0	1	0	0	0	313	1435	50	5	959	5	ADH7	4	100349715	Missense_Mutation	SNP	T	TCGA-PK-A5HB-01A-11D-A29I-10	4852870	100349715	90804561	398	12389										
CENPE	1062	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	chr4	104066472	104066472	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ttatattaaattgttcctctTtctcataaatctcttggatc	3	8	3	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CENPE-277	NM_001813	exon32	c.A4592G	p.K1531R	TCCTCTTTCTCAT	.	12	5	9	0	.	3	3	0	0	0	C	104066472	T	C	104066472	3	2	62	1	0	0	0	0	1	0	0	0	3236	1841	64	4	3585	4	CENPE	4	104066472	Missense_Mutation	SNP	T	TCGA-PK-A5HB-01A-11D-A29I-10	3716757	104066472	87087804	399	12390										
TET2	54790	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	106196337	106196337	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	tcaccctcagacagagtctgTcaactcttattctgcttctg	6	13	7	2	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TET2-4618	NM_001127208	exon11	c.T4670A	p.V1557D	AGTCTGTCAACTC	.	178	78	124	0	.	2	1	1	0	0	A	106196337	T	A	106196337	3	1	62	1	0	0	0	0	1	0	0	0	15807	1667	58	5	4793	5	TET2	4	106196337	Missense_Mutation	SNP	T	TCGA-PK-A5HB-01A-11D-A29I-10	2129865	106196337	84957939	400	12391										
SEC24B	10427	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	110460806	110460806	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ttactatgaatttttgcttcAtgttcagcagcagatttgta	7	6	2	2	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SEC24B-137	NM_006323	exon24	c.A3782G	p.H1261R	TGCTTCATGTTCA	.	42	20	40	0	.	65	36	29	0	0	G	110460806	A	G	110460806	3	3	62	1	0	0	0	0	1	0	0	0	14030	217	8	4	3876	4	SEC24B	4	110460806	Missense_Mutation	SNP	A	TCGA-PK-A5HB-01A-11D-A29I-10	4264469	110460806	80693470	401	12392										
PITX2	5308	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	111539802	111539802	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	tagctcggcctgctggttgcGctccctctttctccatttgg	10	14	2	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PITX2-650	NM_000325	exon3	c.C454T	p.R152C	GGTTGCGCTCCCT	.	138	64	115	0	.	0	0	0	0	0	A	111539802	G	A	111539802	3	1	62	1	0	0	0	0	1	0	0	0	11984	1087	38	1	524	1	PITX2	4	111539802	Missense_Mutation	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	1078996	111539802	79614474	402	12393										
C4orf21	55345	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	113484389	113484389	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	actacatgcgataaaagtatCcagctcaaagtctagggttt	8	8	2	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	C4orf21-90	NM_018392	exon17	c.G4480C	p.D1494H	AAGTATCCAGCTC	.	153	67	122	0	.	1	1	0	0	0	G	113484389	C	G	113484389	3	3	62	1	0	0	0	0	1	0	0	0	2260	855	30	3	1882	3	C4orf21	4	113484389	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	1944587	113484389	77669887	403	12394										
NDST3	9348	bcgsc.ca	37	chr4	118975230	118975230	+	Silent	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gaagttgactgtggcgacctCcaacacctaccatatcaact	7	13	1	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	NDST3-153	NM_004784	exon2	c.C165A	p.L55L	CGACCTCCAACAC	.	237	11	220	2	.	0	0	0	0	0	A	118975230	C	A	118975230	2	1	62	1	0	0	0	0	0	0	0	1	10286	842	30	3		3	NDST3	4	118975230	Silent	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	5490841	118975230	72179046	404	12395										
PRDM5	11107	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	121616316	121616316	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	catgtgcactttgaggtagtCattccttgtaaacttcttat	7	8	2	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PRDM5-91	NM_018699	exon16	c.G1843A	p.D615N	GGTAGTCATTCCT	.	57	39	94	0	.	0	0	0	0	0	T	121616316	C	T	121616316	3	4	62	1	0	0	0	0	1	0	0	0	12492	826	29	3	53	3	PRDM5	4	121616316	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	2641086	121616316	69537960	405	12396										
FAT4	79633	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	126373258	126373258	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	tcacagcacagtcacgagcaAcatccgagttttctttgctg	8	12	3	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	FAT4-108	NM_024582	exon9	c.A11087G	p.N3696S	CGAGCAACATCCG	.	99	81	160	0	.	0	0	0	0	0	G	126373258	A	G	126373258	3	3	62	1	0	0	0	0	1	0	0	0	5711	43	2	4	11121	4	FAT4	4	126373258	Missense_Mutation	SNP	A	TCGA-PK-A5HB-01A-11D-A29I-10	4756942	126373258	64781018	406	12397										
PCDH10	57575	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	134071935	134071935	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gaggtgggggaggagtaggaGaaggagggggaggtggcggg	28	1	0	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PCDH10-92	NM_032961	exon1	c.G640A	p.E214K	GTAGGAGAAGGAG	.	36	28	58	1	.	0	0	0	0	0	A	134071935	G	A	134071935	3	1	62	1	0	0	0	0	1	0	0	0	11536	943	33	3	642	3	PCDH10	4	134071935	Missense_Mutation	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	7698677	134071935	57082341	407	12398										
MAML3	55534	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	140811799	140811799	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	tctgcaagatggtgaagctaTcctccaggtcactgcaaccg	10	12	2	2	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	MAML3-455	NM_018717	exon2	c.A791T	p.D264V	AAGCTATCCTCCA	.	70	43	136	0	.	3	1	2	0	0	A	140811799	T	A	140811799	3	1	62	1	0	0	0	0	1	0	0	0	9235	1435	50	5	2633	5	MAML3	4	140811799	Missense_Mutation	SNP	T	TCGA-PK-A5HB-01A-11D-A29I-10	6739864	140811799	50342477	408	12399										
HHIP	64399	broad.mit.edu	37	chr4	145629444	145629444	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	cccccgaagtgtttgctcatGggctccacgatccaggcagg	12	14	1	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	HHIP-283	NM_022475	exon7	c.G1282A	p.G428R	GCTCATGGGCTCC	.	43	4	57	0	.	0	0	0	0	0	A	145629444	G	A	145629444	3	1	62	1	0	0	0	0	1	0	0	0	7113	1348	47	3	1308	3	HHIP	4	145629444	Missense_Mutation	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	4817645	145629444	45524832	409	12400										
NR3C2	4306	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	149041326	149041326	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	tacttgtgcttagtagcagcAaaactttcatgatggtgtat	9	6	1	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	NR3C2-154	NM_000901	exon7	c.T2624C	p.L875S	AGCAGCAAAACTT	.	56	41	115	0	.	0	0	0	0	0	G	149041326	A	G	149041326	3	3	62	1	0	0	0	0	1	0	0	0	10660	131	5	4	342	4	NR3C2	4	149041326	Missense_Mutation	SNP	A	TCGA-PK-A5HB-01A-11D-A29I-10	3411882	149041326	42112950	410	12401										
DCLK2	166614	hgsc.bcm.edu;bcgsc.ca	37	chr4	151000382	151000384	+	In_Frame_Del	DEL	AGA	AGA	-													0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	cctgcaggccctcagctcggAgaagaaggccaagaaggcgc					novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	AGA	AGA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	DCLK2-300	NM_001040260	exon1	c.203_205del	p.68_69del	GCTCGGAGAAGAA	.	279	209	335	1	.	0	0	0	0	0	-	151000384	AGA	-	151000382	7	5	62	1	0	1	0	1	0	0	0	0	4298	304	11	0	205	0	DCLK2	4	151000382	In_Frame_Del	DEL	AGA	TCGA-PK-A5HB-01A-11D-A29I-10	1959056	151000382	40153894	411	12402										
TLR2	7097	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr4	154624389	154624392	+	Frame_Shift_Del	DEL	TTAC	TTAC	-													0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	catttagacttatcctataaTtacttatctaatttatcgtc					novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	TTAC	TTAC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TLR2-523	NM_003264	exon3	c.330_333del	p.110_111del	CTATAATTACTTA	.	50	33	73	0	.	0	0	0	0	0	-	154624392	TTAC	-	154624389	7	5	62	1	0	1	0	1	0	0	0	0	15988	1490	52	0	332	0	TLR2	4	154624389	Frame_Shift_Del	DEL	TTAC	TCGA-PK-A5HB-01A-11D-A29I-10	3624007	154624389	36529887	412	12403										
GUCY1A3	2982	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	156638325	156638325	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gtctaggtggagaccattggCgatgcctattgtgtagctgg	15	7	1	1	rs112384014		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	GUCY1A3-93	NM_001130687	exon8	c.C1587T	p.G529G	CATTGGCGATGCC	.	139	102	227	2	C|0.500;T|0.500	6	5	1	0	0	T	156638325	C	T	156638325	2	4	62	1	0	0	0	0	0	0	0	1	6915	755	27	1		1	GUCY1A3	4	156638325	Silent	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	2013936	156638325	34515951	413	12404										
FAM198B	51313	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr4	159092094	159092094	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gctgaagggatggtccgaccAaagcctcctgccctggggca	14	13	0	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	FAM198B-90	NM_016613	exon2	c.T434C	p.L145S	CCGACCAAAGCCT	.	68	55	117	0	.	9	4	5	0	0	G	159092094	A	G	159092094	3	3	62	1	0	0	0	0	1	0	0	0	5545	131	5	4	1246	4	FAM198B	4	159092094	Missense_Mutation	SNP	A	TCGA-PK-A5HB-01A-11D-A29I-10	2453769	159092094	32062182	414	12405										
NAF1	92345	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr4	164050138	164050138	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	agggggtgggggtagggagtAtggtaagttaagtaatggat	20	0	0	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	NAF1-70	NM_138386	exon8	c.T1396C	p.Y466H	GGGAGTATGGTAA	.	10	8	22	0	.	0	0	0	0	0	G	164050138	A	G	164050138	3	3	62	1	0	0	0	0	1	0	0	0	10168	449	16	4	233	4	NAF1	4	164050138	Missense_Mutation	SNP	A	TCGA-PK-A5HB-01A-11D-A29I-10	4958044	164050138	27104138	415	12406										
NPY5R	4889	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	164271440	164271440	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	tataatatggatttagagctCgacgagtattataacaagac	8	5	0	2	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	NPY5R-523	NM_006174	exon4	c.C15T	p.L5L	AGAGCTCGACGAG	.	18	13	48	0	.	0	0	0	0	0	T	164271440	C	T	164271440	2	4	62	1	0	0	0	0	0	0	0	1	10639	871	31	1		1	NPY5R	4	164271440	Silent	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	221302	164271440	26882836	416	12407										
AGA	175	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr4	178358622	178358622	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	aggaatatcctgctttaagaTaccaggtggtttgtagggtc	12	6	0	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	AGA-90	NM_000027	exon5	c.A559G	p.I187V	TTAAGATACCAGG	.	108	88	183	0	.	20	1	19	0	0	C	178358622	T	C	178358622	3	2	62	1	0	0	0	0	1	0	0	0	365	1406	49	4	501	4	AGA	4	178358622	Missense_Mutation	SNP	T	TCGA-PK-A5HB-01A-11D-A29I-10	14087182	178358622	12795654	417	12408										
FAT1	2195	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	187532668	187532668	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	cttcagttccaacaagaatgTcctcagacacggtggcacca	8	13	2	2	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	FAT1-34	NM_005245	exon14	c.A9725G	p.D3242G	AGAATGTCCTCAG	.	215	170	348	1	.	10	2	8	0	0	C	187532668	T	C	187532668	3	2	62	1	0	0	0	0	1	0	0	0	5708	1667	58	4	4097	4	FAT1	4	187532668	Missense_Mutation	SNP	T	TCGA-PK-A5HB-01A-11D-A29I-10	9174046	187532668	3621608	418	12409										
SDHA	6389	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr5	236583	236583	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ccaggatcagattgtgcccgGcctgtacgcctgtggggagg	16	11	1	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SDHA-226	NM_004168	exon10	c.G1301A	p.G434D	TGCCCGGCCTGTA	.	467	194	325	0	.	283	149	134	0	0	A	236583	G	A	236583	3	1	62	1	0	0	0	0	1	0	0	0	13998	1203	42	3	1339	3	SDHA	5	236583	Missense_Mutation	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10		236583	180678677	419	12410										
SLC12A7	10723	broad.mit.edu;bcgsc.ca	37	chr5	1064007	1064007	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	atgcgcaagtggtacaagaaCatctgcaggtccttcttcat	9	10	3	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SLC12A7-138	NM_006598	exon20	c.G2691T	p.M897I	CAAGAACATCTGC	.	230	104	133	1	.	22	10	12	0	0	A	1064007	C	A	1064007	3	1	62	1	0	0	0	0	1	0	0	0	14423	478	17	3	580	3	SLC12A7	5	1064007	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	827424	1064007	179851253	420	12411										
IRX4	50805	hgsc.bcm.edu	37	chr5	1882129	1882129	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gagtccgccagcgtgcggccTccggactcgcagcacgtgct	14	16	0	0	rs2232374	byfrequency	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	IRX4-226	NM_016358	exon2	c.A90C	p.G30G	GCGGCCTCCGGAC	.	11	4	1	0	T|0.735;G|0.265	0	0	0	0	0	G	1882129	T	G	1882129	2	3	62	1	0	0	0	0	0	0	0	1	7867	1538	54	5		5	IRX4	5	1882129	Silent	SNP	T	TCGA-PK-A5HB-01A-11D-A29I-10	818122	1882129	179033131	421	12412										
DNAH5	1767	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	13701414	13701414	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	tgtcgcattgcagttaaaaaTccctgggggttaaaaaaacc	9	8	0	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	DNAH5-182	NM_001369	exon77	c.A13470G	p.G4490G	TAAAAATCCCTGG	.	45	20	56	0	.	0	0	0	0	0	C	13701414	T	C	13701414	2	2	62	1	0	0	0	0	0	0	0	1	4615	1422	50	4		4	DNAH5	5	13701414	Silent	SNP	T	TCGA-PK-A5HB-01A-11D-A29I-10	11819285	13701414	167213846	422	12413										
DNAH5	1767	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	13809182	13809182	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	tttagcaatggtttgaattaGaaagtcagtcctcacattgt	8	6	2	2	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	DNAH5-182	NM_001369	exon46	c.C7723T	p.L2575L	GAATTAGAAAGTC	.	204	92	170	0	.	0	0	0	0	0	A	13809182	G	A	13809182	2	1	62	1	0	0	0	0	0	0	0	1	4615	933	33	3		3	DNAH5	5	13809182	Silent	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	107768	13809182	167106078	423	12414										
DNAH5	1767	bcgsc.ca	37	chr5	13830255	13830255	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gaaatttgctgggctgcaacCgagagaactggtagatcaat	12	7	1	2	rs141459197		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	DNAH5-182	NM_001369	exon37	c.G6129A	p.S2043S	TGCAACCGAGAGA	.	266	125	190	5	C|0.999;T|0.001	0	0	0	0	0	T	13830255	C	T	13830255	2	4	62	1	0	0	0	0	0	0	0	1	4615	639	23	1		1	DNAH5	5	13830255	Silent	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	21073	13830255	167085005	424	12415										
MYO10	4651	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	16711035	16711035	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	accttggtcttccccagctgCcactcgctgttggaggcatc	10	15	1	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	MYO10-3	NM_012334	exon21	c.G2151A	p.W717X	CAGCTGCCACTCG	.	136	51	89	0	.	6	6	0	0	0	T	16711035	C	T	16711035	4	4	62	1	0	0	0	0	0	1	0	0	10090	740	26	3	4109	3	MYO10	5	16711035	Nonsense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	2880780	16711035	164204225	425	12416										
ZFR	51663	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	32355934	32355934	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	tccatcaactccatcactatCtcttcttcgtttcctgttgt	3	14	4	0	rs55686708	bycluster	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ZFR-90	NM_016107	exon20	c.G3157A	p.D1053N	CACTATCTCTTCT	.	102	34	81	0	.	233	122	111	0	0	T	32355934	C	T	32355934	3	4	62	1	0	0	0	0	1	0	0	0	17696	913	32	3	71	3	ZFR	5	32355934	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	15644899	32355934	148559326	426	12417										
ADAMTS12	81792	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	33881505	33881505	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	cgtgatgggatagtgcaagcCatatgacaaaaaatgcccac	10	9	0	2	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ADAMTS12-232	NM_030955	exon2	c.G208A	p.G70S	GCAAGCCATATGA	.	75	33	71	1	.	3	3	0	0	0	T	33881505	C	T	33881505	3	4	62	1	0	0	0	0	1	0	0	0	257	594	21	3	4668	3	ADAMTS12	5	33881505	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	1525571	33881505	147033755	427	12418										
BRIX1	55299	ucsc.edu;bcgsc.ca	37	chr5	34915889	34915889	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gtggaggctttgcagttcagGcgaagaagccaaaaagaaac	13	7	1	2	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	BRIX1-90	NM_018321	exon1	c.G46A	p.A16T	GTTCAGGCGAAGA	.	478	179	418	2	.	42	19	23	0	0	A	34915889	G	A	34915889	3	1	62	1	0	0	0	0	1	0	0	0	1518	1203	42	3	48	3	BRIX1	5	34915889	Missense_Mutation	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	1034384	34915889	145999371	428	12419										
SLC1A3	6507	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	36677261	36677261	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	attctcttaacgaagccatcAtgagactggtagcagtaata	8	8	2	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SLC1A3-90	NM_004172	exon6	c.A835G	p.M279V	GCCATCATGAGAC	.	185	89	140	1	.	11	5	6	0	0	G	36677261	A	G	36677261	3	3	62	1	0	0	0	0	1	0	0	0	14468	217	8	4	870	4	SLC1A3	5	36677261	Missense_Mutation	SNP	A	TCGA-PK-A5HB-01A-11D-A29I-10	1761372	36677261	144237999	429	12420										
NIPBL	25836	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	36953863	36953863	+	Splice_Site	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gattgctagtctcacagaccGtaagtttggttaatttatct	8	7	2	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	NIPBL-293	NM_133433	exon2	c.64+1G>A	.	CAGACCGTAAGTT	.	66	27	69	0	.	0	0	0	0	0	A	36953863	G	A	36953863	5	1	62	1	0	0	0	0	0	0	1	0	10457	1159	40	1	67	1	NIPBL	5	36953863	Splice_Site	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	276602	36953863	143961397	430	12421										
OXCT1	5019	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	41739509	41739509	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	tactgcaaaatcacacccagTactcttctgtacgtcatcca	4	14	4	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	OXCT1-133	NM_000436	exon16	c.A1504G	p.T502A	ACCCAGTACTCTT	.	121	48	105	0	.	4	0	4	0	0	C	41739509	T	C	41739509	3	2	62	1	0	0	0	0	1	0	0	0	11358	1638	57	4	66	4	OXCT1	5	41739509	Missense_Mutation	SNP	T	TCGA-PK-A5HB-01A-11D-A29I-10	4785646	41739509	139175751	431	12422										
PAIP1	10605	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	43539100	43539100	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	tcgagtaacttcatccccttTtgcagcttgatctttaactt	5	11	2	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PAIP1-69	NM_006451	exon5	c.A772G	p.K258E	CCCCTTTTGCAGC	.	56	27	44	0	.	167	93	74	0	0	C	43539100	T	C	43539100	3	2	62	1	0	0	0	0	1	0	0	0	11425	1850	64	4	695	4	PAIP1	5	43539100	Missense_Mutation	SNP	T	TCGA-PK-A5HB-01A-11D-A29I-10	1799591	43539100	137376160	432	12423										
PAIP1	10605	broad.mit.edu;mdanderson.org	37	chr5	43556100	43556100	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gctctcaggggcctcgtttgCtctgcaaaagaaaaaaaaac	9	10	2	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PAIP1-69	NM_006451	exon2	c.G267A	p.E89E	CGTTTGCTCTGCA	.	48	15	29	0	.	0	0	0	0	0	T	43556100	C	T	43556100	2	4	62	1	0	0	0	0	0	0	0	1	11425	811	28	3		3	PAIP1	5	43556100	Silent	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	17000	43556100	137359160	433	12424										
NNT	23530	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr5	43619202	43619203	+	Frame_Shift_Ins	INS	-	-	A													0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ggtcagatcacagctgctggINSaaaagttcctccagctaagg					novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	NNT-92	NM_012343	exon5	c.668_669insA	p.G223fs	CTGCTGGAAAAGT	.	27	10	42	0	.	0	0	0	0	0	A	43619203	-	A	43619202	7	5	62	1	0	1	1	0	0	0	0	0	10539	1174	41	0	682	0	NNT	5	43619202	Frame_Shift_Ins	INS	-	TCGA-PK-A5HB-01A-11D-A29I-10	63102	43619202	137296058	434	12425										
PELO	53918	hgsc.bcm.edu;broad.mit.edu	37	chr5	52096425	52096426	+	Frame_Shift_Del	DEL	CT	CT	-													0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ccgggtccgcactaccctcaCtctctgcgtggaggccatcg					novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	CT	CT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PELO-44	NM_015946	exon2	c.197_198del	p.66_66del	CCCTCACTCTCTG	.	260	14	234	0	.	0	0	0	0	0	-	52096426	CT	-	52096425	7	5	62	1	0	1	0	1	0	0	0	0	11753	565	20	0	199	0	PELO	5	52096425	Frame_Shift_Del	DEL	CT	TCGA-PK-A5HB-01A-11D-A29I-10	8477223	52096425	128818835	435	12426										
MIER3	166968	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	56234785	56234785	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gcactggaatttgcaactgcTggaattgtaggttcatagcc	11	8	1	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	MIER3-90	NM_152622	exon4	c.A240T	p.P80P	AACTGCTGGAATT	.	114	38	83	0	.	9	5	4	0	0	A	56234785	T	A	56234785	2	1	62	1	0	0	0	0	0	0	0	1	9610	1567	55	5		5	MIER3	5	56234785	Silent	SNP	T	TCGA-PK-A5HB-01A-11D-A29I-10	4138360	56234785	124680475	436	12427										
NLN	57486	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	65058794	65058794	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	tctccatctgcagtggaaagGaccatgctagactttcccca	8	13	2	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	NLN-90	NM_020726	exon3	c.G309A	p.R103R	GGAAAGGACCATG	.	115	50	94	0	.	0	0	0	0	0	A	65058794	G	A	65058794	2	1	62	1	0	0	0	0	0	0	0	1	10496	1165	41	3		3	NLN	5	65058794	Silent	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	8824009	65058794	115856466	437	12428										
SLC30A5	64924	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	68412226	68412226	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	tttttctctttgtagctgccAatatcttatcatctccctct	3	12	5	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SLC30A5-226	NM_022902	exon10	c.A1078G	p.N360D	GCTGCCAATATCT	.	66	28	47	0	.	0	0	0	0	0	G	68412226	A	G	68412226	3	3	62	1	0	0	0	0	1	0	0	0	14593	130	5	4	1204	4	SLC30A5	5	68412226	Missense_Mutation	SNP	A	TCGA-PK-A5HB-01A-11D-A29I-10	3353432	68412226	112503034	438	12429										
COL4A3BP	10087	hgsc.bcm.edu;bcgsc.ca	37	chr5	74807619	74807621	+	In_Frame_Del	DEL	AGG	AGG	-													0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gtgacgacgggtagaaaagcAggaggagcggagaaaggaga					novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	AGG	AGG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	COL4A3BP-226	NM_001130105	exon1	c.49_51del	p.17_17del	AAAAGCAGGAGGA	.	130	53	120	1	.	0	0	0	0	0	-	74807621	AGG	-	74807619	7	5	62	1	0	1	0	1	0	0	0	0	3698	175	7	0	2279	0	COL4A3BP	5	74807619	In_Frame_Del	DEL	AGG	TCGA-PK-A5HB-01A-11D-A29I-10	6395393	74807619	106107641	439	12430										
POLK	51426	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	74869656	74869656	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gcccacaacttataatagtgCcccccaactttgacaaatac	4	14	0	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	POLK-229	NM_016218	exon5	c.C502T	p.P168S	ATAGTGCCCCCCA	.	160	78	158	0	.	20	15	5	0	0	T	74869656	C	T	74869656	3	4	62	1	0	0	0	0	1	0	0	0	12233	739	26	3	516	3	POLK	5	74869656	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	62037	74869656	106045604	440	12431										
IQGAP2	10788	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	75896750	75896750	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	tctgtgcagaatcaactcagAagccccgcaataggcttaaa	8	11	3	2	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	IQGAP2-96	NM_006633	exon11	c.A1185C	p.R395S	ACTCAGAAGCCCC	.	177	87	127	2	.	1	1	0	0	0	C	75896750	A	C	75896750	3	2	62	1	0	0	0	0	1	0	0	0	7836	243	9	5	1227	5	IQGAP2	5	75896750	Missense_Mutation	SNP	A	TCGA-PK-A5HB-01A-11D-A29I-10	1027094	75896750	105018510	441	12432										
VCAN	1462	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	82816109	82816109	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	tgtttccttattctggtgatAaaatattagtagagggaatt	9	3	1	2	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	VCAN-238	NM_004385	exon7	c.A1984G	p.K662E	GGTGATAAAATAT	.	66	26	66	1	.	0	0	0	0	0	G	82816109	A	G	82816109	3	3	62	1	0	0	0	0	1	0	0	0	17176	363	13	4	2006	4	VCAN	5	82816109	Missense_Mutation	SNP	A	TCGA-PK-A5HB-01A-11D-A29I-10	6919359	82816109	98099151	442	12433										
CETN3	1070	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	89703515	89703515	+	Splice_Site	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	tattttaaagtataccattaCctttaattcatgataatcta	2	6	2	1	rs143515805	alternate_allele	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CETN3-90	NM_004365	exon3	c.153+1G>A	.	CCATTACCTTTAA	.	91	36	89	0	C|1.000;G|0.000	0	0	0	0	0	T	89703515	C	T	89703515	5	4	62	1	0	0	0	0	0	0	1	0	3282	521	18	3	365	3	CETN3	5	89703515	Splice_Site	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	6887406	89703515	91211745	443	12434										
GPR98	84059	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	89990218	89990218	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	tccttgaagttcacctcatgAacatttcagccagtttgaaa	6	10	3	3	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	GPR98-103	NM_032119	exon33	c.A7645G	p.N2549D	CTCATGAACATTT	.	146	68	151	0	.	0	0	0	0	0	G	89990218	A	G	89990218	3	3	62	1	0	0	0	0	1	0	0	0	6742	246	9	4	7775	4	GPR98	5	89990218	Missense_Mutation	SNP	A	TCGA-PK-A5HB-01A-11D-A29I-10	286703	89990218	90925042	444	12435										
NR2F1	7025	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	92923842	92923842	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gctggccgcgcgcctgctctTcagcgccgtcgagtgggccc	15	17	2	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	NR2F1-227	NM_005654	exon2	c.T683C	p.F228S	TGCTCTTCAGCGC	.	294	122	153	0	.	7	4	3	0	0	C	92923842	T	C	92923842	3	2	62	1	0	0	0	0	1	0	0	0	10656	1783	62	4	689	4	NR2F1	5	92923842	Missense_Mutation	SNP	T	TCGA-PK-A5HB-01A-11D-A29I-10	2933624	92923842	87991418	445	12436										
ERAP1	51752	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	96117463	96117463	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	tttggcttttctcagtactgGacaaagaaaactgatattta	7	6	1	2	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ERAP1-70	NM_001198541	exon16	c.C2381G	p.S794C	GTACTGGACAAAG	.	60	21	42	0	.	7	4	3	0	0	C	96117463	G	C	96117463	3	2	62	1	0	0	0	0	1	0	0	0	5216	1174	41	3	493	3	ERAP1	5	96117463	Missense_Mutation	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	3193621	96117463	84797797	446	12437										
LNPEP	4012	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	96315242	96315242	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	tgtacctttaccaaagaaggCtgccataaaaaaaaccagtc	6	10	0	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	LNPEP-229	NM_005575	exon2	c.C420T	p.G140G	AGAAGGCTGCCAT	.	158	64	120	0	.	2	1	1	0	0	T	96315242	C	T	96315242	2	4	62	1	0	0	0	0	0	0	0	1	8888	784	28	3		3	LNPEP	5	96315242	Silent	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	197779	96315242	84600018	447	12438										
LNPEP	4012	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	96315342	96315342	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ggcttcccactgccgttgtgCcactacgctatgaactcagc	9	15	1	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	LNPEP-229	NM_005575	exon2	c.C520T	p.P174S	GTTGTGCCACTAC	.	101	47	95	0	.	8	4	4	0	0	T	96315342	C	T	96315342	3	4	62	1	0	0	0	0	1	0	0	0	8888	739	26	3	526	3	LNPEP	5	96315342	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	100	96315342	84599918	448	12439										
SLCO4C1	353189	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	101631819	101631819	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ctggggctcctggggcttctGaagctcctgtggctgagaat	15	10	1	2	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SLCO4C1-93	NM_180991	exon1	c.C148T	p.Q50X	GCTTCTGAAGCTC	.	47	20	34	1	.	0	0	0	0	0	A	101631819	G	A	101631819	4	1	62	1	0	0	0	0	0	1	0	0	14765	1299	45	3	2078	3	SLCO4C1	5	101631819	Nonsense_Mutation	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	5316477	101631819	79283441	449	12440										
PAM	5066	hgsc.bcm.edu;bcgsc.ca	37	chr5	102340902	102340903	+	Frame_Shift_Ins	INS	-	-	T													0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	atagataaagatgggaattaINSttgggtcacagacgtggctc					novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PAM-68	NM_001177306	exon17	c.1775_1776insT	p.Y592fs	GGAATTATTGGGT	.	351	114	270	1	.	0	0	0	0	0	T	102340903	-	T	102340902	7	5	62	1	0	1	1	0	0	0	0	0	11441	449	16	0	1841	0	PAM	5	102340902	Frame_Shift_Ins	INS	-	TCGA-PK-A5HB-01A-11D-A29I-10	709083	102340902	78574358	450	12441										
APC	324	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	112178919	112178919	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ttctagacttccaatcaataGgtcaggaacctggaaacgtg	9	9	3	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	APC-12026	NM_001127510	exon17	c.G7628A	p.R2543K	TCAATAGGTCAGG	.	146	59	111	0	.	31	20	11	0	0	A	112178919	G	A	112178919	3	1	62	1	0	0	0	0	1	0	0	0	763	1000	35	3	7686	3	APC	5	112178919	Missense_Mutation	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	9838017	112178919	68736341	451	12442										
AQPEP	0	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	115320392	115320392	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	atgaccacgtcaacagaacaGaaaggggcaaggaggtgagt	14	7	1	4	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	.	NM_173800	exon3	c.G964A	p.E322K	AGAACAGAAAGGG	.	193	88	173	2	.	0	0	0	0	0	A	115320392	G	A	115320392	3	1	62	1	0	0	0	0	1	0	0	0	834	943	33	3	974	3	AQPEP	5	115320392	Missense_Mutation	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	3141473	115320392	65594868	452	12443										
SEMA6A	57556	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	115782363	115782363	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gaaaggggagcaaaggatggTttggggggtacgtccggctt	19	5	0	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SEMA6A-92	NM_020796	exon19	c.A3039G	p.K1013K	GGATGGTTTGGGG	.	123	61	113	1	.	40	17	23	0	0	C	115782363	T	C	115782363	2	2	62	1	0	0	0	0	0	0	0	1	14074	1722	60	4		4	SEMA6A	5	115782363	Silent	SNP	T	TCGA-PK-A5HB-01A-11D-A29I-10	461971	115782363	65132897	453	12444										
SEMA6A	57556	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	115815886	115815886	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gcctcatccatgagcgggtgCgtcttgatgaagttcagggt	14	9	3	3	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SEMA6A-92	NM_020796	exon12	c.G1182A	p.T394T	CGGGTGCGTCTTG	.	201	86	152	0	.	35	22	13	0	0	T	115815886	C	T	115815886	2	4	62	1	0	0	0	0	0	0	0	1	14074	755	27	1		1	SEMA6A	5	115815886	Silent	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	33523	115815886	65099374	454	12445										
FAM170A	340069	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	118970154	118970154	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	atggcctgctgccgggtgttCaccaccatggaagccctcca	11	15	1	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	FAM170A-91	NM_182761	exon3	c.C711T	p.F237F	GGTGTTCACCACC	.	162	67	142	1	.	0	0	0	0	0	T	118970154	C	T	118970154	2	4	62	1	0	0	0	0	0	0	0	1	5505	825	29	3		3	FAM170A	5	118970154	Silent	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	3154268	118970154	61945106	455	12446										
ZNF608	57507	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	123976977	123976977	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	catattgacccgggattagcGggtaacccatgccaacgtgg	12	11	0	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ZNF608-229	NM_020747	exon7	c.C4418T	p.P1473L	ATTAGCGGGTAAC	.	136	64	135	0	.	10	8	2	0	0	A	123976977	G	A	123976977	3	1	62	1	0	0	0	0	1	0	0	0	18071	1116	39	1	132	1	ZNF608	5	123976977	Missense_Mutation	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	5006823	123976977	56938283	456	12447										
SLC12A2	6558	broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr5	127493843	127493843	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	tgttggtttgatgatctgtgGccatgtacatatggtaagta	12	4	1	2	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SLC12A2-94	NM_001046	exon16	c.G2462A	p.G821D	TCTGTGGCCATGT	.	117	57	82	1	.	0	0	0	0	0	A	127493843	G	A	127493843	3	1	62	1	0	0	0	0	1	0	0	0	14418	1203	42	3	2524	3	SLC12A2	5	127493843	Missense_Mutation	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	3516866	127493843	53421417	457	12448										
RAPGEF6	51735	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	130766961	130766961	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	tcagctgcttctataatgatAtgctcttgagaaatctcttc	6	9	4	2	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	RAPGEF6-661	NM_001164387	exon28	c.T4095A	p.H1365Q	AATGATATGCTCT	.	67	33	70	0	.	8	5	3	0	0	T	130766961	A	T	130766961	3	4	62	1	0	0	0	0	1	0	0	0	13083	446	16	5	761	5	RAPGEF6	5	130766961	Missense_Mutation	SNP	A	TCGA-PK-A5HB-01A-11D-A29I-10	3273118	130766961	50148299	458	12449										
PCBD2	84105	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	134296370	134296370	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	aaaagcagctgcttctgtgtGatttcttccaaaatacatgt	7	8	2	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PCBD2-90	NM_032151	exon4	c.G392A	p.X131X	CTGTGTGATTTCT	.	122	54	101	0	.	11	5	6	0	0	A	134296370	G	A	134296370	2	1	62	1	0	0	0	0	0	0	0	1	11528	1285	45	3		3	PCBD2	5	134296370	Silent	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	3529409	134296370	46618890	459	12450										
TGFBI	7045	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	135396593	135396593	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	catggccacaaatggcgtggTccatgtcatcaccaatgttc	9	12	2	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TGFBI-26	NM_000358	exon14	c.T1874C	p.V625A	GCGTGGTCCATGT	.	452	177	402	1	.	87	83	4	0	0	C	135396593	T	C	135396593	3	2	62	1	0	0	0	0	1	0	0	0	15857	1667	58	4	1928	4	TGFBI	5	135396593	Missense_Mutation	SNP	T	TCGA-PK-A5HB-01A-11D-A29I-10	1100223	135396593	45518667	460	12451										
TRPC7	57113	ucsc.edu;bcgsc.ca	37	chr5	135587359	135587359	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	taggtgaagtatgccacttcCggcggaagcgagacattgtg	14	8	0	2	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	.	NM_020389	exon6	c.G1557A	p.P519P	CACTTCCGGCGGA	.	374	172	277	2	.	0	0	0	0	0	T	135587359	C	T	135587359	2	4	62	1	0	0	0	0	0	0	0	1	16622	639	23	1		1	TRPC7	5	135587359	Silent	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	190766	135587359	45327901	461	12452										
KDM3B	51780	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	137722268	137722268	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ggccttgcagcagggactgtGccagaaaaacagaaaggcag	14	9	0	2	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	KDM3B-542	NM_016604	exon7	c.G1338A	p.V446V	GACTGTGCCAGAA	.	307	137	258	0	.	21	11	10	0	0	A	137722268	G	A	137722268	2	1	62	1	0	0	0	0	0	0	0	1	8148	1306	46	3		3	KDM3B	5	137722268	Silent	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	2134909	137722268	43192992	462	12453										
PCDHA7	56141	bcgsc.ca	37	chr5	140215497	140215497	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gctgtcgagctacgtgtcagTgcacgcggagagcggcaagg	17	10	1	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PCDHA7-94	NM_031852	exon1	c.T1529C	p.V510A	TGTCAGTGCACGC	.	405	181	97	2	.	3	1	2	0	0	C	140215497	T	C	140215497	3	2	62	1	0	0	0	0	1	0	0	0	11558	1696	59	4	1531	4	PCDHA7	5	140215497	Missense_Mutation	SNP	T	TCGA-PK-A5HB-01A-11D-A29I-10	2493229	140215497	40699763	463	12454										
PCDHB2	56133	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	140475545	140475545	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	tgtgctccatccaagatgatCttccttttttcttgaaacct	5	11	2	3	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PCDHB2-96	NM_018936	exon1	c.C1171T	p.L391F	GATGATCTTCCTT	.	292	138	227	0	.	1	1	0	0	0	T	140475545	C	T	140475545	3	4	62	1	0	0	0	0	1	0	0	0	11571	913	32	3	1173	3	PCDHB2	5	140475545	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	260048	140475545	40439715	464	12455										
PCDHB5	26167	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	140516394	140516394	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	cctcctacaccctgttcgtcCgagagaacaacagccccgcc	7	19	0	1	rs201677139	byfrequency	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PCDHB5-95	NM_015669	exon1	c.C1378T	p.R460X	TTCGTCCGAGAGA	.	322	133	231	1	C|0.998;G|0.001;T|0.001	98	67	31	0	0	T	140516394	C	T	140516394	4	4	62	1	0	0	0	0	0	1	0	0	11574	644	23	1	1380	1	PCDHB5	5	140516394	Nonsense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	40849	140516394	40398866	465	12456										
PCDHB5	26167	hgsc.bcm.edu	37	chr5	140516906	140516906	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	cgcaccgccaggctgctgagCgagcgcgacgcggccaagca	15	16	0	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PCDHB5-95	NM_015669	exon1	c.C1890T	p.S630S	GCTGAGCGAGCGC	.	105	45	7	0	.	51	29	22	0	0	T	140516906	C	T	140516906	2	4	62	1	0	0	0	0	0	0	0	1	11574	767	27	1		1	PCDHB5	5	140516906	Silent	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	512	140516906	40398354	466	12457										
PCDHB6	56130	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	140531452	140531452	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	acagaccgcggctccccggcGttgagcagcgaggcgctggt	16	14	0	2	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PCDHB6-91	NM_018939	exon1	c.G1614A	p.A538A	CCCGGCGTTGAGC	.	514	223	137	1	.	0	0	0	0	0	A	140531452	G	A	140531452	2	1	62	1	0	0	0	0	0	0	0	1	11575	1132	40	1		1	PCDHB6	5	140531452	Silent	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	14546	140531452	40383808	467	12458										
PCDHB7	56129	broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr5	140554289	140554289	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gggcgcacaatggcgaggtgCgtaccgccaggctgctgagc	17	12	0	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PCDHB7-95	NM_018940	exon1	c.C1873T	p.R625C	GAGGTGCGTACCG	.	289	60	44	1	.	1	1	0	0	0	T	140554289	C	T	140554289	3	4	62	1	0	0	0	0	1	0	0	0	11576	768	27	1	1875	1	PCDHB7	5	140554289	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	22837	140554289	40360971	468	12459										
PCDHB13	56123	hgsc.bcm.edu	37	chr5	140595600	140595600	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ctgctgagcgagcgcgacgcGgccaagcacaggctggtggt	17	12	0	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PCDHB13-93	NM_018933	exon1	c.G1905C	p.A635A	CGACGCGGCCAAG	.	130	51	5	0	.	34	26	8	0	0	C	140595600	G	C	140595600	2	2	62	1	0	0	0	0	0	0	0	1	11567	1103	39	2		2	PCDHB13	5	140595600	Silent	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	41311	140595600	40319660	469	12460										
PCDHGA3	56112	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	140724077	140724077	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ccaattaaaactgcttttgaCccagatgtaggcattaactc	6	10	0	2	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PCDHGA3-68	NM_032011	exon1	c.C477T	p.D159D	TTTTGACCCAGAT	.	92	38	63	1	.	3	0	3	0	0	T	140724077	C	T	140724077	2	4	62	1	0	0	0	0	0	0	0	1	11584	506	18	3		3	PCDHGA3	5	140724077	Silent	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	128477	140724077	40191183	470	12461										
PCDHGB6	56100	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	140789294	140789294	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	cgtcatacgtgtcagtgagcGcgcagagcggggtggtgttc	17	9	2	2	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	.	NM_032100	exon1	c.G1525A	p.A509T	GTGAGCGCGCAGA	.	192	82	96	1	.	1	1	0	0	0	A	140789294	G	A	140789294	3	1	62	1	0	0	0	0	1	0	0	0	11596	1087	38	1	1527	1	PCDHGB6	5	140789294	Missense_Mutation	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	65217	140789294	40125966	471	12462										
RELL2	285613	hgsc.bcm.edu;bcgsc.ca	37	chr5	141017910	141017912	+	In_Frame_Del	DEL	AAG	AAG	-													0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	tcatgatctgccacgtgctcAagaagaagggctaccgctgc					novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	AAG	AAG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	RELL2-90	NM_173828	exon1	c.118_120del	p.40_40del	GTGCTCAAGAAGA	.	106	35	95	1	.	0	0	0	0	0	-	141017912	AAG	-	141017910	7	5	62	1	0	1	0	1	0	0	0	0	13254	131	5	0	120	0	RELL2	5	141017910	In_Frame_Del	DEL	AAG	TCGA-PK-A5HB-01A-11D-A29I-10	228616	141017910	39897350	472	12463										
NR3C1	2908	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	142662181	142662181	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	agttgataaaaccgctgccaGttctggctggagtttccttc	10	10	1	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	NR3C1-92	NM_001024094	exon8	c.C2136T	p.N712N	CTGCCAGTTCTGG	.	52	17	56	0	.	29	12	17	0	0	A	142662181	G	A	142662181	2	1	62	1	0	0	0	0	0	0	0	1	10659	1020	36	3		3	NR3C1	5	142662181	Silent	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	1644271	142662181	38253079	473	12464										
GRXCR2	643226	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	145246099	145246099	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ttggggtaatgtgctttctgCctccaccaaaggtctatcgt	10	10	2	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	GRXCR2-22	NM_001080516	exon2	c.G529A	p.A177T	TTTCTGCCTCCAC	.	105	20	58	0	.	0	0	0	0	0	T	145246099	C	T	145246099	3	4	62	1	0	0	0	0	1	0	0	0	6834	739	26	3	225	3	GRXCR2	5	145246099	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	2583918	145246099	35669161	474	12465										
LARS	51520	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr5	145524102	145524103	+	Splice_Site	INS	-	-	G													0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	tctccataatccaagtacctINSgggagtggacaaattgatat					novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	LARS-90	NM_020117	exon18	c.1590-2->C	.	AGTACCTGGGAGT	.	147	67	109	0	.	0	0	0	0	0	G	145524103	-	G	145524102	8	5	62	1	0	1	1	0	0	0	1	0	8656	1594	55	0	2006	0	LARS	5	145524102	Splice_Site	INS	-	TCGA-PK-A5HB-01A-11D-A29I-10	278003	145524102	35391158	475	12466										
RBM27	54439	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	145634509	145634509	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gctttgttttccctcagataCatatgaaccagatggttaca	7	9	1	3	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	RBM27-70	NM_018989	exon10	c.C1448A	p.T483K	CAGATACATATGA	.	69	21	68	0	.	0	0	0	0	0	A	145634509	C	A	145634509	3	1	62	1	0	0	0	0	1	0	0	0	13162	478	17	3	1486	3	RBM27	5	145634509	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	110407	145634509	35280751	476	12467										
RBM27	54439	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	145647328	145647328	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	caagaagtgcttaaaaaaaaAcaggtaacagtcttgattct	7	6	2	2	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	RBM27-70	NM_018989	exon15	c.A2448C	p.K816N	AAAAAAACAGGTA	.	272	115	241	1	.	0	0	0	0	0	C	145647328	A	C	145647328	3	2	62	1	0	0	0	0	1	0	0	0	13162	40	2	5	2506	5	RBM27	5	145647328	Missense_Mutation	SNP	A	TCGA-PK-A5HB-01A-11D-A29I-10	12819	145647328	35267932	477	12468										
TCERG1	10915	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	145834680	145834680	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ccccaccaaatgcagtgatgCgaggcccaccacctctgatg	9	16	1	2	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TCERG1-92	NM_006706	exon2	c.C121T	p.R41X	GTGATGCGAGGCC	.	140	66	115	0	.	7	5	2	0	0	T	145834680	C	T	145834680	4	4	62	1	0	0	0	0	0	1	0	0	15722	760	27	1	127	1	TCERG1	5	145834680	Nonsense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	187352	145834680	35080580	478	12469										
TCERG1	10915	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	145849290	145849290	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	atcaacctgggaaaaaccccAagaactaaaggaaaaaggta	8	8	1	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TCERG1-92	NM_006706	exon7	c.A1382G	p.Q461R	AACCCCAAGAACT	.	37	11	47	0	.	14	5	9	0	0	G	145849290	A	G	145849290	3	3	62	1	0	0	0	0	1	0	0	0	15722	130	5	4	1408	4	TCERG1	5	145849290	Missense_Mutation	SNP	A	TCGA-PK-A5HB-01A-11D-A29I-10	14610	145849290	35065970	479	12470										
FBXO38	81545	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	147805102	147805102	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	aaggacccagtggtcttcagCgtgtagtaaaaccaacctca	9	11	3	0	rs144744644		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	FBXO38-231	NM_001271723	exon14	c.C1756T	p.R586C	CTTCAGCGTGTAG	.	160	75	135	0	C|1.000;T|0.000	32	20	12	0	0	T	147805102	C	T	147805102	3	4	62	1	0	0	0	0	1	0	0	0	5765	768	27	1	1806	1	FBXO38	5	147805102	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	1955812	147805102	33110158	480	12471										
PPARGC1B	133522	broad.mit.edu	37	chr5	149213123	149213123	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gctgacatttgcagatgagcCgctggtcccctcggagcccc	12	15	0	3	rs201665839		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PPARGC1B-186	NM_133263	exon5	c.C1487T	p.P496L	ATGAGCCGCTGGT	.	225	6	168	0	C|0.999;T|0.000	5	5	0	0	0	T	149213123	C	T	149213123	3	4	62	1	0	0	0	0	1	0	0	0	12330	652	23	1	1512	1	PPARGC1B	5	149213123	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	1408021	149213123	31702137	481	12472										
PDGFRB	5159	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	149510124	149510124	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	tttgaggtctctgcaggcagAccagatgatgttcggctggg	15	8	1	4	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PDGFRB-1499	NM_002609	exon9	c.T1345C	p.S449P	AGGCAGACCAGAT	.	64	27	49	0	.	75	74	0	1	0	G	149510124	A	G	149510124	3	3	62	1	0	0	0	0	1	0	0	0	11691	275	10	4	2035	4	PDGFRB	5	149510124	Missense_Mutation	SNP	A	TCGA-PK-A5HB-01A-11D-A29I-10	297001	149510124	31405136	482	12473										
GALNT10	55568	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr5	153760166	153760166	+	Frame_Shift_Del	DEL	A	A	-													0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	cgatccctccagaactgcagAaagctgaccccagcgaccca					novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	GALNT10-92	NM_198321	exon6	c.913delA	p.K305fs	CTGCAGAAAGCTG	.	129	61	88	0	.	0	0	0	0	0	-	153760166	A	-	153760166	7	5	62	1	0	1	0	1	0	0	0	0	6228	247	9	0	935	0	GALNT10	5	153760166	Frame_Shift_Del	DEL	A	TCGA-PK-A5HB-01A-11D-A29I-10	4250042	153760166	27155094	483	12474										
LARP1	23367	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr5	154173383	154173383	+	Frame_Shift_Del	DEL	C	C	-													0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ctgagtctgccacctacgtgCccgtggccccccccacccca					novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	LARP1-94	NM_015315	exon6	c.661delC	p.P221fs	TACGTGCCCGTGG	.	115	45	85	0	.	0	0	0	0	0	-	154173383	C	-	154173383	7	5	62	1	0	1	0	1	0	0	0	0	8650	739	26	0	683	0	LARP1	5	154173383	Frame_Shift_Del	DEL	C	TCGA-PK-A5HB-01A-11D-A29I-10	413217	154173383	26741877	484	12475	142	2								
LARP1	23367	hgsc.bcm.edu	37	chr5	154173385	154173390	+	In_Frame_Del	DEL	CGTGGC	CGTGGC	-													0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gagtctgccacctacgtgccCgtggccccccccaccccagc					novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	CGTGGC	CGTGGC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	LARP1-94	NM_015315	exon6	c.663_668del	p.221_223del	CGTGCCCGTGGCC	.	117	0	86	0	.	0	0	0	0	0	-	154173390	CGTGGC	-	154173385	7	5	62	1	0	1	0	1	0	0	0	0	8650	639	23	0	685	0	LARP1	5	154173385	In_Frame_Del	DEL	CGTGGC	TCGA-PK-A5HB-01A-11D-A29I-10	2	154173385	26741875	485	12476	142	2								
CNOT8	9337	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	154254927	154254927	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ggcacaggagtggcccagaaGcagaatgaggatgtggactc	16	8	0	3	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CNOT8-90	NM_004779	exon7	c.G807A	p.K269K	CCAGAAGCAGAAT	.	100	40	80	0	.	119	61	58	0	0	A	154254927	G	A	154254927	2	1	62	1	0	0	0	0	0	0	0	1	3631	962	34	3		3	CNOT8	5	154254927	Silent	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	81542	154254927	26660333	486	12477										
EBF1	1879	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	158140042	158140042	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	tgtccactgaacgaattcacGcccatcatccctgcgtggac	8	15	2	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	EBF1-92	NM_024007	exon13	c.C1305T	p.G435G	ATTCACGCCCATC	.	209	80	195	0	.	13	9	4	0	0	A	158140042	G	A	158140042	2	1	62	1	0	0	0	0	0	0	0	1	4891	1074	38	1		1	EBF1	5	158140042	Silent	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	3885115	158140042	22775218	487	12478										
TTC1	7265	hgsc.bcm.edu;bcgsc.ca	37	chr5	159437837	159437837	+	Frame_Shift_Del	DEL	A	A	-													0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	agaatacctaatagaactggAaaaaaacatgtcggatgaag					novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TTC1-91	NM_003314	exon2	c.302delA	p.E101fs	AACTGGAAAAAAA	.	205	77	151	1	.	0	0	0	0	0	-	159437837	A	-	159437837	7	5	62	1	0	1	0	1	0	0	0	0	16716	246	9	0	304	0	TTC1	5	159437837	Frame_Shift_Del	DEL	A	TCGA-PK-A5HB-01A-11D-A29I-10	1297795	159437837	21477423	488	12479										
SLIT3	6586	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	168201335	168201335	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	aagttgaggttctgcaggtcCtgaaacgtgttcacccgcag	12	10	2	2	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SLIT3-95	NM_001271946	exon13	c.G1200A	p.Q400Q	CAGGTCCTGAAAC	.	247	95	156	2	.	90	44	46	0	0	T	168201335	C	T	168201335	2	4	62	1	0	0	0	0	0	0	0	1	14776	680	24	3		3	SLIT3	5	168201335	Silent	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	8763498	168201335	12713925	489	12480										
TLX3	30012	broad.mit.edu;bcgsc.ca	37	chr5	170737206	170737206	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	cggcgcatcggccacccctaCcagaaccggacgccgcccaa	10	20	0	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TLX3-658	NM_021025	exon2	c.C474T	p.Y158Y	CCCCTACCAGAAC	.	231	97	121	1	.	15	3	11	1	0	T	170737206	C	T	170737206	2	4	62	1	0	0	0	0	0	0	0	1	15999	518	18	3		3	TLX3	5	170737206	Silent	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	2535871	170737206	10178054	490	12481										
UBTD2	92181	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	171661284	171661284	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	attcatccctcttgctgcgtAgttgtccatctgtcatagga	8	11	4	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	UBTD2-90	NM_152277	exon2	c.T149C	p.L50P	CTGCGTAGTTGTC	.	131	59	114	0	.	12	7	5	0	0	G	171661284	A	G	171661284	3	3	62	1	0	0	0	0	1	0	0	0	16946	420	15	4	563	4	UBTD2	5	171661284	Missense_Mutation	SNP	A	TCGA-PK-A5HB-01A-11D-A29I-10	924078	171661284	9253976	491	12482										
MSX2	4488	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr5	174152037	174152037	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	cccggccgatattcgccgccGccaagtgagtgcgcgccggg	15	16	0	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	MSX2-90	NM_002449	exon1	c.G375A	p.P125P	GCCGCCGCCAAGT	.	297	144	186	0	.	0	0	0	0	0	A	174152037	G	A	174152037	2	1	62	1	0	0	0	0	0	0	0	1	9924	1074	38	1		1	MSX2	5	174152037	Silent	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	2490753	174152037	6763223	492	12483										
CLTB	1212	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr5	175824632	175824632	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	tgttgatcttgttcttctctActtgttcactctggcgctgg	9	10	5	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CLTB-90	NM_001834	exon4	c.T440C	p.V147A	TTCTCTACTTGTT	.	83	37	61	0	.	992	445	546	1	0	G	175824632	A	G	175824632	3	3	62	1	0	0	0	0	1	0	0	0	3571	391	14	4	261	4	CLTB	5	175824632	Missense_Mutation	SNP	A	TCGA-PK-A5HB-01A-11D-A29I-10	1672595	175824632	5090628	493	12484										
AGXT2L2	85007	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	177649506	177649506	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ccctggagctggaaggcccaGaagtgcttgcctacccggcc	13	15	0	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	AGXT2L2-91	NM_153373	exon8	c.C777A	p.F259L	GGCCCAGAAGTGC	.	434	189	368	1	.	8	7	1	0	0	T	177649506	G	T	177649506	3	4	62	1	0	0	0	0	1	0	0	0	407	933	33	3	595	3	AGXT2L2	5	177649506	Missense_Mutation	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	1824874	177649506	3265754	494	12485										
ZNF454	285676	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	178392351	178392351	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ttgtgtgcagggcacaccttAccaaacaccagaatatccac	7	13	0	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ZNF454-93	NM_001178089	exon5	c.A946G	p.T316A	CACCTTACCAAAC	.	67	24	52	0	.	0	0	0	0	0	G	178392351	A	G	178392351	3	3	62	1	0	0	0	0	1	0	0	0	17960	391	14	4	960	4	ZNF454	5	178392351	Missense_Mutation	SNP	A	TCGA-PK-A5HB-01A-11D-A29I-10	742845	178392351	2522909	495	12486										
ZNF354C	30832	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	178507040	178507040	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	tgggaaacctttcatctgcaGctcctcacttacccagtatc	6	14	3	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ZNF354C-91	NM_014594	exon5	c.G1607A	p.S536N	TCTGCAGCTCCTC	.	113	50	104	0	.	3	2	1	0	0	A	178507040	G	A	178507040	3	1	62	1	0	0	0	0	1	0	0	0	17903	971	34	3	1621	3	ZNF354C	5	178507040	Missense_Mutation	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	114689	178507040	2408220	496	12487										
BTNL9	153579	hgsc.bcm.edu	37	chr5	180486404	180486404	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	agcggttctccgccggccgcCactactgggaggtgcacgtg	15	14	1	0	rs186444058		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	BTNL9-91	NM_152547	exon11	c.C1150T	p.H384Y	GGCCGCCACTACT	.	18	12	0	0	C|0.983;T|0.017	2	1	1	0	0	T	180486404	C	T	180486404	3	4	62	1	0	0	0	0	1	0	0	0	1571	594	21	3	1188	3	BTNL9	5	180486404	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	1979364	180486404	428856	497	12488										
OR2V2	285659	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr5	180582175	180582175	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	cctcatgttggtctgtaccaAtgtgccaaagatggcagcca	10	11	2	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	OR2V2-69	NM_206880	exon1	c.A233C	p.N78T	GTACCAATGTGCC	.	190	69	143	0	.	0	0	0	0	0	C	180582175	A	C	180582175	3	2	62	1	0	0	0	0	1	0	0	0	11060	101	4	5	235	5	OR2V2	5	180582175	Missense_Mutation	SNP	A	TCGA-PK-A5HB-01A-11D-A29I-10	95771	180582175	333085	498	12489										
OR2V2	285659	hgsc.bcm.edu;broad.mit.edu	37	chr5	180582745	180582745	+	Frame_Shift_Del	DEL	C	C	-													0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gaggcctaggcactaccgggCccccagccatgacaaggtgg					novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	OR2V2-69	NM_206880	exon1	c.803delC	p.A268fs	ACCGGGCCCCCAG	.	344	23	277	0	.	0	0	0	0	0	-	180582745	C	-	180582745	7	5	62	1	0	1	0	1	0	0	0	0	11060	739	26	0	805	0	OR2V2	5	180582745	Frame_Shift_Del	DEL	C	TCGA-PK-A5HB-01A-11D-A29I-10	570	180582745	332515	499	12490										
SERPINB1	1992	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	2836398	2836398	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	tttcatgaatttatccttccAgtttcccttgaaatagatgg	6	8	1	3	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SERPINB1-292	NM_030666	exon5	c.T511C	p.W171R	CCTTCCAGTTTCC	.	70	28	66	0	.	25	8	17	0	0	G	2836398	A	G	2836398	3	3	62	1	0	0	0	0	1	0	0	0	14131	188	7	4	640	4	SERPINB1	6	2836398	Missense_Mutation	SNP	A	TCGA-PK-A5HB-01A-11D-A29I-10		2836398	168278669	500	12491										
FARS2	10667	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	5369294	5369294	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	tgcacaccagtgggacttgcTgcacgcgggactggatgcct	14	12	0	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	FARS2-90	NM_006567	exon2	c.T491C	p.L164P	ACTTGCTGCACGC	.	136	60	96	1	.	23	14	9	0	0	C	5369294	T	C	5369294	3	2	62	1	0	0	0	0	1	0	0	0	5697	1580	55	4	493	4	FARS2	6	5369294	Missense_Mutation	SNP	T	TCGA-PK-A5HB-01A-11D-A29I-10	2532896	5369294	165745773	501	12492										
DSP	1832	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	7585739	7585739	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	catgggaggataagcaccgaAgaagccatccggaaggggtt	15	8	0	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	DSP-518	NM_004415	exon24	c.A8244G	p.E2748E	CACCGAAGAAGCC	.	367	144	271	2	.	22	5	17	0	0	G	7585739	A	G	7585739	2	3	62	1	0	0	0	0	0	0	0	1	4792	69	3	4		4	DSP	6	7585739	Silent	SNP	A	TCGA-PK-A5HB-01A-11D-A29I-10	2216445	7585739	163529328	502	12493										
BMP6	654	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	7880448	7880448	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ttcaccttatgaaccccgagTatgtccccaaaccgtgctgt	7	14	1	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	BMP6-578	NM_001718	exon7	c.T1414C	p.Y472H	CCCGAGTATGTCC	.	289	111	217	0	.	5	5	0	0	0	C	7880448	T	C	7880448	3	2	62	1	0	0	0	0	1	0	0	0	1465	1638	57	4	1440	4	BMP6	6	7880448	Missense_Mutation	SNP	T	TCGA-PK-A5HB-01A-11D-A29I-10	294709	7880448	163234619	503	12494										
GCNT2	2651	broad.mit.edu	37	chr6	10556944	10556944	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gaagctgactttcccttggcAtatataatggtcatccatca	7	10	2	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	GCNT2-92	NM_001491	exon1	c.A288G	p.A96A	CTTGGCATATATA	.	111	6	87	0	.	0	0	0	0	0	G	10556944	A	G	10556944	2	3	62	1	0	0	0	0	0	0	0	1	6321	204	8	4		4	GCNT2	6	10556944	Silent	SNP	A	TCGA-PK-A5HB-01A-11D-A29I-10	2676496	10556944	160558123	504	12495										
KDM1B	221656	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	18215282	18215282	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gtgattgccggggaggctgtCgcatccgtgaggaccctgga	17	10	0	2	rs144521010	byfrequency	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	KDM1B-91	NM_153042	exon16	c.C1458T	p.V486V	GGCTGTCGCATCC	.	99	30	49	0	C|0.998;T|0.002	57	28	29	0	0	T	18215282	C	T	18215282	2	4	62	1	0	0	0	0	0	0	0	1	8144	871	31	1		1	KDM1B	6	18215282	Silent	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	7658338	18215282	152899785	505	12496										
HIST1H2BE	8344	hgsc.bcm.edu;bcgsc.ca	37	chr6	26184051	26184052	+	Frame_Shift_Ins	INS	-	-	C													0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gccagcgaaatccgctcccgINSccccgaagaagggctccaag					novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	HIST1H2BE-90	NM_003523	exon1	c.28_29insC	p.A10fs	GCTCCCGCCCCGA	.	244	95	197	2	.	0	0	0	0	0	C	26184052	-	C	26184051	7	5	62	1	0	1	1	0	0	0	0	0	7165	1087	38	0	30	0	HIST1H2BE	6	26184051	Frame_Shift_Ins	INS	-	TCGA-PK-A5HB-01A-11D-A29I-10	7968769	26184051	144931016	506	12497										
RNF39	80352	hgsc.bcm.edu	37	chr6	30039373	30039373	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gcgcttggggccgtcaggggGcgcgggcgtccctggtgggg	23	11	1	0	rs61754472		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	RNF39-226	NM_025236	exon4	c.C778G	p.P260A	CAGGGGGCGCGGG	.	16	14	2	0	G|0.966;C|0.034	4	4	0	0	0	C	30039373	G	C	30039373	3	2	62	1	0	0	0	0	1	0	0	0	13526	1203	42	3	488	3	RNF39	6	30039373	Missense_Mutation	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	3855322	30039373	141075694	507	12498										
C6orf15	29113	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	31079664	31079664	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gggtgagaggcctgtggcatCgggagaagactccccaggca	17	10	0	3	rs147112509	alternate_allele	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	C6orf15-90	NM_014070	exon2	c.G472A	p.D158N	TGGCATCGGGAGA	.	125	57	83	1	C|1.000;G|0.000	0	0	0	0	0	T	31079664	C	T	31079664	3	4	62	1	0	0	0	0	1	0	0	0	2342	884	31	1	509	1	C6orf15	6	31079664	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	1040291	31079664	140035403	508	12499										
CCHCR1	54535	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	31112778	31112778	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gcagccccaagctagccaggGactcctgggtctgctgcagc	13	15	1	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CCHCR1-91	NM_001105564	exon14	c.C1949T	p.S650F	GCCAGGGACTCCT	.	64	23	56	0	.	27	15	12	0	0	A	31112778	G	A	31112778	3	1	62	1	0	0	0	0	1	0	0	0	2883	1174	41	3	686	3	CCHCR1	6	31112778	Missense_Mutation	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	33114	31112778	140002289	509	12500										
VARS	7407	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr6	31747403	31747403	+	Frame_Shift_Del	DEL	G	G	-													0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	acctctgagggctccgggtaGggggtaacacagaggctagg					novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	VARS-93	NM_006295	exon27	c.3270delC	p.P1090fs	CGGGTAGGGGGTA	.	127	58	77	0	.	0	0	0	0	0	-	31747403	G	-	31747403	7	5	62	1	0	1	0	1	0	0	0	0	17161	987	35	0	540	0	VARS	6	31747403	Frame_Shift_Del	DEL	G	TCGA-PK-A5HB-01A-11D-A29I-10	634625	31747403	139367664	510	12501										
C4A	720	bcgsc.ca;mdanderson.org	37	chr6	31994861	31994861	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gctttgagcagctggagctgCggcctgtcctctataactac	11	12	1	1	rs201414896		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	C4A-44	NM_007293	exon20	c.C2554T	p.R852W	GAGCTGCGGCCTG	.	389	212	281	0	C|0.999;T|0.001	107	27	80	0	0	T	31994861	C	T	31994861	3	4	62	1	0	0	0	0	1	0	0	0	2253	759	27	1	7694	1	C4A	6	31994861	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	247458	31994861	139120206	511	12502										
C4A	720	bcgsc.ca	37	chr6	31997544	31997544	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ggcctggctcacccgtcaggGcagcttccaagggggattcc	14	14	2	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	C4A-44	NM_007293	exon29	c.G3878A	p.G1293D	GTCAGGGCAGCTT	.	456	103	406	6	.	206	51	155	0	0	A	31997544	G	A	31997544	3	1	62	1	0	0	0	0	1	0	0	0	2253	1203	42	3	8717	3	C4A	6	31997544	Missense_Mutation	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	2683	31997544	139117523	512	12503										
TNXB	7148	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	32012914	32012914	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ggtcgccgtccacgagcaagGcctggggctgcccgttcgtg	16	14	0	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TNXB-90	NM_019105	exon32	c.C10790T	p.A3597V	AGCAAGGCCTGGG	.	452	95	354	2	.	78	59	19	0	0	A	32012914	G	A	32012914	3	1	62	1	0	0	0	0	1	0	0	0	16383	1203	42	3	3975	3	TNXB	6	32012914	Missense_Mutation	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	15370	32012914	139102153	513	12504										
HLA-DOB	3112	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr6	32782355	32782355	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	caggagtggggtcctctctgGgtacactgtcacctctggtt	13	11	3	0	rs201263357		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	HLA-DOB-91	NM_002120	exon3	c.C385T	p.P129S	TCTCTGGGTACAC	.	163	58	137	0	.	3	3	0	0	0	A	32782355	G	A	32782355	3	1	62	1	0	0	0	0	1	0	0	0	7222	1232	43	3	452	3	HLA-DOB	6	32782355	Missense_Mutation	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	769441	32782355	138332712	514	12505										
TAP1	6890	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	32820954	32820954	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gaggctcccgagtttgtgccAcagggctgctgcgggcagtg	17	11	0	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TAP1-91	NM_000593	exon1	c.T640C	p.W214R	TGTGCCACAGGGC	.	145	59	86	0	.	37	26	11	0	0	G	32820954	A	G	32820954	3	3	62	1	0	0	0	0	1	0	0	0	15587	159	6	4	1830	4	TAP1	6	32820954	Missense_Mutation	SNP	A	TCGA-PK-A5HB-01A-11D-A29I-10	38599	32820954	138294113	515	12506										
ZBTB22	9278	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	33283545	33283545	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ccaccctcatatgggccaaaGtcattggaggactcacagaa	9	12	3	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ZBTB22-69	NM_001145338	exon2	c.C1149A	p.D383E	GCCAAAGTCATTG	.	87	42	66	1	.	29	20	9	0	0	T	33283545	G	T	33283545	3	4	62	1	0	0	0	0	1	0	0	0	17567	1020	36	3	759	3	ZBTB22	6	33283545	Missense_Mutation	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	462591	33283545	137831522	516	12507										
KIFC1	3833	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	33373046	33373046	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	atgaagtgtttgaagagattGccatgcttgtccagtcagcc	11	8	1	3	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	KIFC1-90	NM_002263	exon7	c.G1174A	p.A392T	GAGATTGCCATGC	.	84	34	91	0	.	32	25	7	0	0	A	33373046	G	A	33373046	3	1	62	1	0	0	0	0	1	0	0	0	8333	1319	46	3	1200	3	KIFC1	6	33373046	Missense_Mutation	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	89501	33373046	137742021	517	12508										
CUTA	51596	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	33385290	33385290	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ttggcgaccttctcgttgggGcaagtaacaaaggctgcaga	13	9	1	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CUTA-90	NM_001014433	exon2	c.C282T	p.C94C	GTTGGGGCAAGTA	.	162	82	146	0	.	790	507	281	0	2	A	33385290	G	A	33385290	2	1	62	1	0	0	0	0	0	0	0	1	4068	1195	42	3		3	CUTA	6	33385290	Silent	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	12244	33385290	137729777	518	12509										
CUTA	51596	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	33385455	33385455	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	agcgccggcatccaaacaaaAgacaggagcagagaggcctg	13	11	0	2	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CUTA-90	NM_001014433	exon2	c.T117C	p.S39S	AACAAAAGACAGG	.	74	29	55	0	.	484	199	285	0	0	G	33385455	A	G	33385455	2	3	62	1	0	0	0	0	0	0	0	1	4068	59	3	4		4	CUTA	6	33385455	Silent	SNP	A	TCGA-PK-A5HB-01A-11D-A29I-10	165	33385455	137729612	519	12510										
ITPR3	3710	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	33657170	33657170	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gcatcgggcccacactcaacAtcctgggtgccctcaatgtg	10	15	2	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ITPR3-1085	NM_002224	exon50	c.A6850T	p.I2284F	CTCAACATCCTGG	.	82	35	48	0	.	19	4	15	0	0	T	33657170	A	T	33657170	3	4	62	1	0	0	0	0	1	0	0	0	7943	217	8	5	7048	5	ITPR3	6	33657170	Missense_Mutation	SNP	A	TCGA-PK-A5HB-01A-11D-A29I-10	271715	33657170	137457897	520	12511										
ANKS1A	23294	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr6	34951143	34951143	+	Frame_Shift_Del	DEL	C	C	-													0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	tacaaaagaagtagataaaaCccccccaccccagccacctc					novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ANKS1A-94	NM_015245	exon7	c.953delC	p.T318fs	ATAAAACCCCCCC	.	26	11	44	0	.	0	0	0	0	0	-	34951143	C	-	34951143	7	5	62	1	0	1	0	1	0	0	0	0	688	507	18	0	979	0	ANKS1A	6	34951143	Frame_Shift_Del	DEL	C	TCGA-PK-A5HB-01A-11D-A29I-10	1293973	34951143	136163924	521	12512										
DNAH8	1769	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	38840860	38840860	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gagaacgcctctcctgccacGgtttctaggatgggcatggt	13	11	2	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	DNAH8-615	NM_001206927	exon51	c.G7416A	p.T2472T	TGCCACGGTTTCT	.	138	55	87	0	.	1	1	0	0	0	A	38840860	G	A	38840860	2	1	62	1	0	0	0	0	0	0	0	1	4618	1103	39	1		1	DNAH8	6	38840860	Silent	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	3889717	38840860	132274207	522	12513										
KCNK17	89822	hgsc.bcm.edu	37	chr6	39282036	39282036	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gagcagcaggagcacggtgcTgggcaccgcgcagccccgga	17	14	0	0	rs10947804	byfrequency	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	KCNK17-227	NM_001135111	exon1	c.A61G	p.S21G	CGGTGCTGGGCAC	.	22	22	0	0	T|0.441;C|0.559	0	0	0	0	0	C	39282036	T	C	39282036	3	2	62	1	0	0	0	0	1	0	0	0	8085	1580	55	4	1089	4	KCNK17	6	39282036	Missense_Mutation	SNP	T	TCGA-PK-A5HB-01A-11D-A29I-10	441176	39282036	131833031	523	12514										
NFYA	4800	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	41060791	41060791	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	aggcaagcccgagctaaactAgaggcagaagggaaaattcc	12	9	0	2	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	NFYA-226	NM_002505	exon8	c.A855G	p.L285L	TAAACTAGAGGCA	.	117	46	132	0	.	22	7	15	0	0	G	41060791	A	G	41060791	2	3	62	1	0	0	0	0	0	0	0	1	10418	407	15	4		4	NFYA	6	41060791	Silent	SNP	A	TCGA-PK-A5HB-01A-11D-A29I-10	1778755	41060791	130054276	524	12515										
TRERF1	55809	bcgsc.ca;mdanderson.org	37	chr6	42236625	42236625	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gagccagaggctgctggtagTcataatacaggtgcccttgg	14	9	1	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TRERF1-230	NM_033502	exon5	c.A704G	p.D235G	TGGTAGTCATAAT	.	105	42	74	2	.	3	1	2	0	0	C	42236625	T	C	42236625	3	2	62	1	0	0	0	0	1	0	0	0	16513	1667	58	4	2954	4	TRERF1	6	42236625	Missense_Mutation	SNP	T	TCGA-PK-A5HB-01A-11D-A29I-10	1175834	42236625	128878442	525	12516										
UBR2	23304	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	42610157	42610157	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	attacttttttttttagattTattactaccataatgtgaaa	3	4	0	2	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	UBR2-94	NM_015255	exon18	c.T2035A	p.Y679N	TAGATTTATTACT	.	32	18	23	0	.	0	0	0	0	0	A	42610157	T	A	42610157	3	1	62	1	0	0	0	0	1	0	0	0	16940	1754	61	5	2251	5	UBR2	6	42610157	Missense_Mutation	SNP	T	TCGA-PK-A5HB-01A-11D-A29I-10	373532	42610157	128504910	526	12517										
PEX6	5190	hgsc.bcm.edu	37	chr6	42946490	42946490	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	tccagcacccgcggtccgggCactgggagggtctctccgcg	15	16	1	0	rs9462858	byfrequency	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PEX6-91	NM_000287	exon1	c.G399T	p.V133V	TCCGGGCACTGGG	.	13	6	0	0	C|0.673;A|0.327	21	0	21	0	0	A	42946490	C	A	42946490	2	1	62	1	0	0	0	0	0	0	0	1	11779	697	25	3		3	PEX6	6	42946490	Silent	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	336333	42946490	128168577	527	12518										
SRF	6722	hgsc.bcm.edu	37	chr6	43139653	43139653	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	agggcgactcggagtcgggcGaggaggaggagctgggcgcc	22	9	0	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SRF-1084	NM_003131	exon1	c.G259A	p.E87K	TCGGGCGAGGAGG	.	46	22	1	0	.	0	0	0	0	0	A	43139653	G	A	43139653	3	1	62	1	0	0	0	0	1	0	0	0	15180	1059	37	1	261	1	SRF	6	43139653	Missense_Mutation	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	193163	43139653	127975414	528	12519										
GTPBP2	54676	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	43592287	43592287	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ctgggcagcagtgacggcatCatcctcagaggtgaccagca	13	12	2	3	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	GTPBP2-92	NM_019096	exon7	c.G1060A	p.D354N	CGGCATCATCCTC	.	88	44	74	0	.	53	23	30	0	0	T	43592287	C	T	43592287	3	4	62	1	0	0	0	0	1	0	0	0	6901	826	29	3	772	3	GTPBP2	6	43592287	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	452634	43592287	127522780	529	12520										
SLC35B2	347734	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	44223336	44223336	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ggctgtggccccatagctgcGggtcatcactctttcctgca	11	14	3	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SLC35B2-91	NM_178148	exon4	c.C406T	p.R136C	AGCTGCGGGTCAT	.	103	38	60	0	.	102	60	42	0	0	A	44223336	G	A	44223336	3	1	62	1	0	0	0	0	1	0	0	0	14611	1116	39	1	896	1	SLC35B2	6	44223336	Missense_Mutation	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	631049	44223336	126891731	530	12521										
TDRD6	221400	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	46658119	46658119	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	catctgtttattttcctcttAtgcagaattgcttggaaatt	6	7	2	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TDRD6-138	NM_001168359	exon1	c.A2254T	p.M752L	CCTCTTATGCAGA	.	72	25	52	0	.	0	0	0	0	0	T	46658119	A	T	46658119	3	4	62	1	0	0	0	0	1	0	0	0	15771	449	16	5	2256	5	TDRD6	6	46658119	Missense_Mutation	SNP	A	TCGA-PK-A5HB-01A-11D-A29I-10	2434783	46658119	124456948	531	12522										
GPR115	221393	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr6	47680311	47680312	+	Frame_Shift_Ins	INS	-	-	T													0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	taaaaaatatttctacagacINSttgtctgataatgttactcg					novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	GPR115-160	NM_153838	exon5	c.519_520insT	p.D173fs	TACAGACTTGTCT	.	83	23	50	0	.	0	0	0	0	0	T	47680312	-	T	47680311	7	5	62	1	0	1	1	0	0	0	0	0	6652	564	20	0	533	0	GPR115	6	47680311	Frame_Shift_Ins	INS	-	TCGA-PK-A5HB-01A-11D-A29I-10	1022192	47680311	123434756	532	12523										
PKHD1	5314	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	51695744	51695744	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	tcaacaccttgccatgtttcAgggagggaccattttaaagc	9	10	2	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PKHD1-603	NM_170724	exon52	c.T8217G	p.P2739P	TGTTTCAGGGAGG	.	100	39	89	0	.	0	0	0	0	0	C	51695744	A	C	51695744	2	2	62	1	0	0	0	0	0	0	0	1	12000	175	7	5		5	PKHD1	6	51695744	Silent	SNP	A	TCGA-PK-A5HB-01A-11D-A29I-10	4015433	51695744	119419323	533	12524										
GSTA2	2939	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr6	52615481	52615482	+	Frame_Shift_Ins	INS	-	-	T													0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	cactgtgggcaggttactgaINSttctggttttcagggcctgt					novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	GSTA2-91	NM_000846	exon7	c.563_564insA	p.I188fs	TTACTGATTCTGG	.	76	35	86	0	.	0	0	0	0	0	T	52615482	-	T	52615481	7	5	62	1	0	1	1	0	0	0	0	0	6852	333	12	0	109	0	GSTA2	6	52615481	Frame_Shift_Ins	INS	-	TCGA-PK-A5HB-01A-11D-A29I-10	919737	52615481	118499586	534	12525										
ELOVL5	60481	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	53140004	53140004	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	tgcgcaggatgaagaagaaaGtgtccataaattctatgagt	11	5	1	4	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ELOVL5-90	NM_001242828	exon6	c.C461A	p.T154N	AAGAAAGTGTCCA	.	216	74	185	1	.	301	179	122	0	0	T	53140004	G	T	53140004	3	4	62	1	0	0	0	0	1	0	0	0	5090	1029	36	3	535	3	ELOVL5	6	53140004	Missense_Mutation	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	524523	53140004	117975063	535	12526										
HMGCLL1	54511	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	55304258	55304258	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gagccccaggccattaagcaTatatatcaaatcctcagtgg	8	11	2	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	HMGCLL1-94	NM_019036	exon9	c.A985T	p.M329L	TAAGCATATATAT	.	80	35	90	0	.	0	0	0	0	0	A	55304258	T	A	55304258	3	1	62	1	0	0	0	0	1	0	0	0	7251	1406	49	5	135	5	HMGCLL1	6	55304258	Missense_Mutation	SNP	T	TCGA-PK-A5HB-01A-11D-A29I-10	2164254	55304258	115810809	536	12527										
DST	667	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	56371582	56371582	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	agtccatctatttcttccctTatggtctagaataagaaaat	5	8	3	2	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	DST-523	NM_015548	exon57	c.A11376G	p.I3792M	TTCCCTTATGGTC	.	90	39	62	0	.	0	0	0	0	0	C	56371582	T	C	56371582	3	2	62	1	0	0	0	0	1	0	0	0	4794	1744	61	4	4251	4	DST	6	56371582	Missense_Mutation	SNP	T	TCGA-PK-A5HB-01A-11D-A29I-10	1067324	56371582	114743485	537	12528										
DST	667	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr6	56481544	56481545	+	Frame_Shift_Ins	INS	-	-	T													0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gcttccaagatatgtttaccINStttttgtctgtcaagcattc					novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	DST-523	NM_001723	exon24	c.6721_6722insA	p.G2241fs	GTTTACCTTTTTG	.	95	40	62	0	.	0	0	0	0	0	T	56481545	-	T	56481544	7	5	62	1	0	1	1	0	0	0	0	0	4794	681	24	0	13678	0	DST	6	56481544	Frame_Shift_Ins	INS	-	TCGA-PK-A5HB-01A-11D-A29I-10	109962	56481544	114633523	538	12529										
FAM135A	57579	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	71138076	71138076	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ttcaagcaatggtagaattcTctgtggagctaaacaagttc	9	7	2	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	FAM135A-90	NM_001162529	exon2	c.T31A	p.S11T	GAATTCTCTGTGG	.	44	20	45	0	.	2	1	1	0	0	A	71138076	T	A	71138076	3	1	62	1	0	0	0	0	1	0	0	0	5464	1551	54	5	33	5	FAM135A	6	71138076	Missense_Mutation	SNP	T	TCGA-PK-A5HB-01A-11D-A29I-10	14656532	71138076	99976991	539	12530										
RIMS1	22999	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	72960679	72960679	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	aaatactagaaccaaaatggAatcaaacttttgtctattca	4	7	3	1	rs201901272	alternate_allele	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	RIMS1-144	NM_014989	exon14	c.A2428G	p.N810D	AAATGGAATCAAA	.	139	63	111	0	A|0.999;T|0.000	0	0	0	0	0	G	72960679	A	G	72960679	3	3	62	1	0	0	0	0	1	0	0	0	13402	246	9	4	2645	4	RIMS1	6	72960679	Missense_Mutation	SNP	A	TCGA-PK-A5HB-01A-11D-A29I-10	1822603	72960679	98154388	540	12531										
RIMS1	22999	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	72968725	72968725	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	catccaacaagaaggtcacgTtctccaaccagacaccatga	6	14	2	3	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	RIMS1-144	NM_014989	exon18	c.T2964A	p.R988R	GTCACGTTCTCCA	.	108	54	74	0	.	0	0	0	0	0	A	72968725	T	A	72968725	2	1	62	1	0	0	0	0	0	0	0	1	13402	1712	60	5		5	RIMS1	6	72968725	Silent	SNP	T	TCGA-PK-A5HB-01A-11D-A29I-10	8046	72968725	98146342	541	12532										
RIMS1	22999	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	73000437	73000437	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	cagccccaagagcaactgatCagccagtcattaggggaaaa	10	11	2	2	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	RIMS1-144	NM_014989	exon25	c.C3610T	p.Q1204X	ACTGATCAGCCAG	.	122	47	115	0	.	0	0	0	0	0	T	73000437	C	T	73000437	4	4	62	1	0	0	0	0	0	1	0	0	13402	827	29	3	3871	3	RIMS1	6	73000437	Nonsense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	31712	73000437	98114630	542	12533										
KCNQ5	56479	hgsc.bcm.edu	37	chr6	73332040	73332040	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ggcatgaaggatgtggagtcCggccggggcagggtgctgct	20	8	0	1	rs3734212	byfrequency	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	KCNQ5-158	NM_001160132	exon1	c.C123G	p.S41S	GGAGTCCGGCCGG	.	7	7	0	0	C|0.505;G|0.495	0	0	0	0	0	G	73332040	C	G	73332040	2	3	62	1	0	0	0	0	0	0	0	1	8107	639	23	2		2	KCNQ5	6	73332040	Silent	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	331603	73332040	97783027	543	12534										
SENP6	26054	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	76380283	76380283	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ttttagtttggcaattctatTatcaacacacctctgaaacg	5	9	3	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SENP6-660	NM_015571	exon11	c.T1239C	p.I413I	TTCTATTATCAAC	.	46	19	30	0	.	25	15	10	0	0	C	76380283	T	C	76380283	2	2	62	1	0	0	0	0	0	0	0	1	14085	1742	61	4		4	SENP6	6	76380283	Silent	SNP	T	TCGA-PK-A5HB-01A-11D-A29I-10	3048243	76380283	94734784	544	12535										
HMGN3	9324	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	79913320	79913320	+	Nonsense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	agcagatgtttttcttggttTgggttcaggttttggtggag	15	3	2	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	HMGN3-226	NM_001201362	exon4	c.A124T	p.K42X	TTGGTTTGGGTTC	.	85	37	62	0	.	260	205	55	0	0	A	79913320	T	A	79913320	4	1	62	1	0	0	0	0	0	1	0	0	7257	1821	63	5	187	5	HMGN3	6	79913320	Nonsense_Mutation	SNP	T	TCGA-PK-A5HB-01A-11D-A29I-10	3533037	79913320	91201747	545	12536										
DOPEY1	23033	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	83849997	83849997	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	cacgcagtggaatcctctcaAtccttcatatgatcatgtcc	6	13	3	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	DOPEY1-155	NM_015018	exon23	c.A5290G	p.I1764V	CTCTCAATCCTTC	.	103	40	91	1	.	1	1	0	0	0	G	83849997	A	G	83849997	3	3	62	1	0	0	0	0	1	0	0	0	4718	101	4	4	5372	4	DOPEY1	6	83849997	Missense_Mutation	SNP	A	TCGA-PK-A5HB-01A-11D-A29I-10	3936677	83849997	87265070	546	12537										
ZNF292	23036	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	87967774	87967774	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	atttcctcgatctggtgtgaCtaactttaataccagtgtca	7	9	2	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ZNF292-72	NM_015021	exon8	c.C4427T	p.T1476I	GTGTGACTAACTT	.	74	31	101	0	.	12	7	5	0	0	T	87967774	C	T	87967774	3	4	62	1	0	0	0	0	1	0	0	0	17863	565	20	3	4457	3	ZNF292	6	87967774	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	4117777	87967774	83147293	547	12538										
MDN1	23195	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	90377855	90377855	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	tgaatcttccataaattcttTgggcaagcaaaatcccttag	6	9	2	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	MDN1-100	NM_014611	exon84	c.A13972G	p.K4658E	ATTCTTTGGGCAA	.	44	19	61	0	.	9	1	8	0	0	C	90377855	T	C	90377855	3	2	62	1	0	0	0	0	1	0	0	0	9443	1821	63	4	2894	4	MDN1	6	90377855	Missense_Mutation	SNP	T	TCGA-PK-A5HB-01A-11D-A29I-10	2410081	90377855	80737212	548	12539										
SOBP	55084	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	107811894	107811894	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gccggctcacccagtgaaaaGggagatcaatgaggagatga	14	8	2	5	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SOBP-91	NM_018013	exon1	c.G74A	p.R25K	TGAAAAGGGAGAT	.	131	58	99	0	.	2	1	1	0	0	A	107811894	G	A	107811894	3	1	62	1	0	0	0	0	1	0	0	0	14947	1000	35	3	76	3	SOBP	6	107811894	Missense_Mutation	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	17434039	107811894	63303173	549	12540										
MICAL1	64780	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	109773753	109773753	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	tcctgcagccgagataaggaCgtcaaattcatagttggcca	10	10	2	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	MICAL1-154	NM_001159291	exon5	c.G637A	p.V213I	TAAGGACGTCAAA	.	211	76	153	1	.	4	2	2	0	0	T	109773753	C	T	109773753	3	4	62	1	0	0	0	0	1	0	0	0	9597	536	19	1	2650	1	MICAL1	6	109773753	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	1961859	109773753	61341314	550	12541										
ZBTB24	9841	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	109798048	109798048	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gtgcaggtgtacggccgctcGcctgtgtgcatcctggtgtg	16	11	0	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ZBTB24-92	NM_014797	exon3	c.C1038T	p.G346G	CCGCTCGCCTGTG	.	146	53	93	0	.	3	3	0	0	0	A	109798048	G	A	109798048	2	1	62	1	0	0	0	0	0	0	0	1	17568	1074	38	1		1	ZBTB24	6	109798048	Silent	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	24295	109798048	61317019	551	12542										
LAMA4	3910	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr6	112441533	112441534	+	Frame_Shift_Ins	INS	-	-	T													0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	tcctggcttctaatcttcagINSttttttgtgaccaacattaa					novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	LAMA4-140	NM_001105206	exon33	c.4618_4619insA	p.L1540fs	TCTTCAGTTTTTT	.	60	21	44	0	.	0	0	0	0	0	T	112441534	-	T	112441533	7	5	62	1	0	1	1	0	0	0	0	0	8630	1020	36	0	881	0	LAMA4	6	112441533	Frame_Shift_Ins	INS	-	TCGA-PK-A5HB-01A-11D-A29I-10	2643485	112441533	58673534	552	12543										
HDAC2	3066	hgsc.bcm.edu	37	chr6	114292035	114292035	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gctcaccgtcgtagtagtagCagactttttttttgccgcct	9	11	1	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	HDAC2-660	NM_001527	exon1	c.G38A	p.C13Y	TAGTAGCAGACTT	.	29	13	1	0	.	61	24	37	0	0	T	114292035	C	T	114292035	3	4	62	1	0	0	0	0	1	0	0	0	7028	710	25	3	1484	3	HDAC2	6	114292035	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	1850502	114292035	56823032	553	12544										
HS3ST5	222537	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	114378976	114378976	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	atcctttctggaacctcctcTgtgataaaatatgctgggct	8	10	2	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	HS3ST5-92	NM_153612	exon2	c.A486G	p.T162T	CTCCTCTGTGATA	.	103	54	92	0	.	0	0	0	0	0	C	114378976	T	C	114378976	2	2	62	1	0	0	0	0	0	0	0	1	7389	1567	55	4		4	HS3ST5	6	114378976	Silent	SNP	T	TCGA-PK-A5HB-01A-11D-A29I-10	86941	114378976	56736091	554	12545										
ROS1	6098	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	117665330	117665330	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gccataccatgtgaggtttgTcttggccagaggtaatctga	12	8	2	3	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ROS1-1353	NM_002944	exon27	c.A4417G	p.T1473A	GGTTTGTCTTGGC	.	199	84	135	0	.	0	0	0	0	0	C	117665330	T	C	117665330	3	2	62	1	0	0	0	0	1	0	0	0	13566	1667	58	4	2694	4	ROS1	6	117665330	Missense_Mutation	SNP	T	TCGA-PK-A5HB-01A-11D-A29I-10	3286354	117665330	53449737	555	12546										
C6orf170	221322	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	121427246	121427246	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	cttcagtagcatttcaatatAatgggtgctgcaaaaatata	7	6	2	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	C6orf170-92	NM_152730	exon30	c.T3388C	p.Y1130H	CAATATAATGGGT	.	180	69	190	2	.	3	2	1	0	0	G	121427246	A	G	121427246	3	3	62	1	0	0	0	0	1	0	0	0	2350	362	13	4	397	4	C6orf170	6	121427246	Missense_Mutation	SNP	A	TCGA-PK-A5HB-01A-11D-A29I-10	3761916	121427246	49687821	556	12547										
HEY2	23493	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	126080476	126080476	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ccaccaccatcatccgctccAcccgcatcactgggccgccg	7	22	2	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	HEY2-658	NM_012259	exon5	c.A542G	p.H181R	CGCTCCACCCGCA	.	69	31	56	0	.	2	2	0	0	0	G	126080476	A	G	126080476	3	3	62	1	0	0	0	0	1	0	0	0	7100	159	6	4	560	4	HEY2	6	126080476	Missense_Mutation	SNP	A	TCGA-PK-A5HB-01A-11D-A29I-10	4653230	126080476	45034591	557	12548										
CENPW	387103	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	126667370	126667370	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ggtccatctgaactgtttacTgtttgttcatcgattagcag	9	8	2	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CENPW-90	NM_001012507	exon2	c.T146G	p.L49R	GTTTACTGTTTGT	.	83	39	71	0	.	72	39	33	0	0	G	126667370	T	G	126667370	3	3	62	1	0	0	0	0	1	0	0	0	3250	1580	55	5	152	5	CENPW	6	126667370	Missense_Mutation	SNP	T	TCGA-PK-A5HB-01A-11D-A29I-10	586894	126667370	44447697	558	12549										
LAMA2	3908	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	129204502	129204502	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	cacaggcacatcagcaaagaGgtacagtcgaggcatgggct	13	10	1	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	LAMA2-162	NM_000426	exon1	c.G112C	p.G38R	CAAAGAGGTACAG	.	134	58	68	0	.	0	0	0	0	0	C	129204502	G	C	129204502	3	2	62	1	0	0	0	0	1	0	0	0	8628	1014	35	3	114	3	LAMA2	6	129204502	Missense_Mutation	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	2537132	129204502	41910565	559	12550										
ARHGAP18	93663	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	129950582	129950582	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	agtgcttgctcggcaaatgaTacctccaggttgatgtctgt	11	9	1	2	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ARHGAP18-230	NM_033515	exon5	c.A702T	p.V234V	AAATGATACCTCC	.	59	30	43	0	.	53	29	24	0	0	A	129950582	T	A	129950582	2	1	62	1	0	0	0	0	0	0	0	1	868	1393	49	5		5	ARHGAP18	6	129950582	Silent	SNP	T	TCGA-PK-A5HB-01A-11D-A29I-10	746080	129950582	41164485	560	12551										
MOXD1	26002	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	132645213	132645213	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	atccattgtgtaaaataaccTcagtccagaattatctatta	4	8	2	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	MOXD1-515	NM_015529	exon7	c.A970T	p.R324W	ATAACCTCAGTCC	.	131	42	110	0	.	2	1	1	0	0	A	132645213	T	A	132645213	3	1	62	1	0	0	0	0	1	0	0	0	9748	1550	54	5	895	5	MOXD1	6	132645213	Missense_Mutation	SNP	T	TCGA-PK-A5HB-01A-11D-A29I-10	2694631	132645213	38469854	561	12552										
IL20RA	53832	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	137329836	137329836	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	cagtaaagagtgttcggctcCagccaggtgagcaccagcgt	13	11	0	2	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	IL20RA-94	NM_014432	exon5	c.G624A	p.L208L	CGGCTCCAGCCAG	.	108	36	79	0	.	9	5	4	0	0	T	137329836	C	T	137329836	2	4	62	1	0	0	0	0	0	0	0	1	7689	581	21	3		3	IL20RA	6	137329836	Silent	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	4684623	137329836	33785231	562	12553										
REPS1	85021	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	139237076	139237076	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	tggccttggagggggaggtgGtggtgcagtgttatcaggcg	21	5	1	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	REPS1-522	NM_031922	exon14	c.C1636G	p.P546A	GAGGTGGTGGTGC	.	173	90	87	0	.	64	35	29	0	0	C	139237076	G	C	139237076	3	2	62	1	0	0	0	0	1	0	0	0	13263	1261	44	3	779	3	REPS1	6	139237076	Missense_Mutation	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	1907240	139237076	31877991	563	12554										
HECA	51696	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	139488123	139488123	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	aaatgcccactttgattacaGccctgcggggttggcagttc	11	11	0	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	HECA-90	NM_016217	exon2	c.G974A	p.S325N	ATTACAGCCCTGC	.	33	14	29	0	.	5	4	1	0	0	A	139488123	G	A	139488123	3	1	62	1	0	0	0	0	1	0	0	0	7059	971	34	3	980	3	HECA	6	139488123	Missense_Mutation	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	251047	139488123	31626944	564	12555										
HIVEP2	3097	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	143074762	143074762	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ctgcttagaaagcacataggGgtccttggagaaggactccc	12	10	0	2	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	HIVEP2-95	NM_006734	exon10	c.C6823A	p.P2275T	CATAGGGGTCCTT	.	81	40	83	0	.	12	9	3	0	0	T	143074762	G	T	143074762	3	4	62	1	0	0	0	0	1	0	0	0	7208	1232	43	3	521	3	HIVEP2	6	143074762	Missense_Mutation	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	3586639	143074762	28040305	565	12556										
UTRN	7402	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr6	145160331	145160331	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	tgaatctgattcccgaatcaAtggtgtttccccatgggctt	9	10	2	2	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	UTRN-95	NM_007124	exon71	c.A10088G	p.N3363S	GAATCAATGGTGT	.	31	10	28	0	.	26	13	13	0	0	G	145160331	A	G	145160331	3	3	62	1	0	0	0	0	1	0	0	0	17141	101	4	4	10370	4	UTRN	6	145160331	Missense_Mutation	SNP	A	TCGA-PK-A5HB-01A-11D-A29I-10	2085569	145160331	25954736	566	12557										
SHPRH	257218	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	146214396	146214396	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	tccctatggcctgaagctcaTgggcagggttcaatatgggc	13	10	2	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SHPRH-92	NM_173082	exon28	c.A4841G	p.H1614R	AGCTCATGGGCAG	.	155	72	95	0	.	8	7	1	0	0	C	146214396	T	C	146214396	3	2	62	1	0	0	0	0	1	0	0	0	14326	1464	51	4	251	4	SHPRH	6	146214396	Missense_Mutation	SNP	T	TCGA-PK-A5HB-01A-11D-A29I-10	1054065	146214396	24900671	567	12558										
SHPRH	257218	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	146248371	146248371	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ctttgtgttcctccgaggagCgcaacacttctctgtacaat	8	12	1	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SHPRH-92	NM_173082	exon15	c.G3182A	p.R1061H	GAGGAGCGCAACA	.	47	7	53	0	.	3	3	0	0	0	T	146248371	C	T	146248371	3	4	62	1	0	0	0	0	1	0	0	0	14326	768	27	1	1977	1	SHPRH	6	146248371	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	33975	146248371	24866696	568	12559										
LRP11	84918	hgsc.bcm.edu	37	chr6	150184882	150184882	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	cgctgtagccgccgctgcccGggcccgggcagtcctcctgg	15	18	0	0	rs9322225		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	LRP11-90	NM_032832	exon1	c.C275G	p.P92R	CTGCCCGGGCCCG	.	11	7	0	0	G|0.492;C|0.508	3	2	1	0	0	C	150184882	G	C	150184882	3	2	62	1	0	0	0	0	1	0	0	0	8980	1116	39	2	1255	2	LRP11	6	150184882	Missense_Mutation	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	3936511	150184882	20930185	569	12560										
RAET1L	154064	broad.mit.edu;bcgsc.ca	37	chr6	150343331	150343331	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ccgcacaccaccgtggtccaGgtctgaacttagggatgacg	12	13	1	2	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	RAET1L-90	NM_130900	exon2	c.C134A	p.P45H	GGTCCAGGTCTGA	.	583	162	521	1	.	162	162	0	0	0	T	150343331	G	T	150343331	3	4	62	1	0	0	0	0	1	0	0	0	13036	1000	35	3	617	3	RAET1L	6	150343331	Missense_Mutation	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	158449	150343331	20771736	570	12561										
AKAP12	9590	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	151672050	151672050	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gggccaacgaagatgactctGatgtcccggccgtggtccct	13	13	1	3	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	AKAP12-293	NM_005100	exon4	c.G2524T	p.D842Y	GACTCTGATGTCC	.	317	131	243	1	.	4	4	0	0	0	T	151672050	G	T	151672050	3	4	62	1	0	0	0	0	1	0	0	0	448	1290	45	3	2563	3	AKAP12	6	151672050	Missense_Mutation	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	1328719	151672050	19443017	571	12562										
AKAP12	9590	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	151673402	151673402	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gggtctatagacacaggcatAacagtcagtcgggaaaaggt	13	7	2	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	AKAP12-293	NM_005100	exon4	c.A3876G	p.I1292M	AGGCATAACAGTC	.	239	107	137	0	.	3	3	0	0	0	G	151673402	A	G	151673402	3	3	62	1	0	0	0	0	1	0	0	0	448	352	13	4	3915	4	AKAP12	6	151673402	Missense_Mutation	SNP	A	TCGA-PK-A5HB-01A-11D-A29I-10	1352	151673402	19441665	572	12563										
CNKSR3	154043	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	154732089	154732089	+	Nonsense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ataagatggtgttttctctcTcatttttgtgggcagaatgt	10	5	2	2	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CNKSR3-26	NM_173515	exon11	c.A1258T	p.R420X	TCTCTCTCATTTT	.	113	40	110	0	.	4	4	0	0	0	A	154732089	T	A	154732089	4	1	62	1	0	0	0	0	0	1	0	0	3614	1559	54	5	421	5	CNKSR3	6	154732089	Nonsense_Mutation	SNP	T	TCGA-PK-A5HB-01A-11D-A29I-10	3058687	154732089	16382978	573	12564										
CNKSR3	154043	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	154732101	154732101	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	tttctctctcatttttgtggGcagaatgttggtttccaccg	9	9	2	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CNKSR3-26	NM_173515	exon11	c.C1246T	p.P416S	TTGTGGGCAGAAT	.	126	48	109	0	.	1	1	0	0	0	A	154732101	G	A	154732101	3	1	62	1	0	0	0	0	1	0	0	0	3614	1203	42	3	433	3	CNKSR3	6	154732101	Missense_Mutation	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	12	154732101	16382966	574	12565										
SYTL3	94120	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	159166688	159166688	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gaaaagaagaaaaagtgcaaTccgtaagttgttttttttaa	8	3	0	2	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SYTL3-90	NM_001242384	exon13	c.T1032A	p.N344K	GTGCAATCCGTAA	.	41	15	44	0	.	0	0	0	0	0	A	159166688	T	A	159166688	3	1	62	1	0	0	0	0	1	0	0	0	15521	1432	50	5	854	5	SYTL3	6	159166688	Missense_Mutation	SNP	T	TCGA-PK-A5HB-01A-11D-A29I-10	4434587	159166688	11948379	575	12566										
SLC22A3	6581	broad.mit.edu;bcgsc.ca	37	chr6	160819024	160819024	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ttctcagtttgaccttgtctGtgtcaatgcgtggatgctgg	12	8	3	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SLC22A3-517	NM_021977	exon2	c.G443C	p.C148S	TTGTCTGTGTCAA	.	106	5	92	0	.	0	0	0	0	0	C	160819024	G	C	160819024	3	2	62	1	0	0	0	0	1	0	0	0	14490	1377	48	3	449	3	SLC22A3	6	160819024	Missense_Mutation	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	1652336	160819024	10296043	576	12567										
LPA	4018	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	161006174	161006174	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	tgatagtggtggagagtgtgCctcgataactctgtccatca	12	8	2	2	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	LPA-74	NM_005577	exon27	c.G4193A	p.G1398D	AGTGTGCCTCGAT	.	311	141	225	2	.	0	0	0	0	0	T	161006174	C	T	161006174	3	4	62	1	0	0	0	0	1	0	0	0	8930	739	26	3	1985	3	LPA	6	161006174	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	187150	161006174	10108893	577	12568										
MAP3K4	4216	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	161510389	161510389	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ctagttgtcatgcagtctgcGcatctcacaattcagagaaa	8	10	4	1	rs186715923		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	MAP3K4-548	NM_006724	exon11	c.G2859A	p.A953A	GTCTGCGCATCTC	.	89	29	63	0	G|0.999;A|0.000	6	6	0	0	0	A	161510389	G	A	161510389	2	1	62	1	0	0	0	0	0	0	0	1	9280	1074	38	1		1	MAP3K4	6	161510389	Silent	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	504215	161510389	9604678	578	12569										
QKI	9444	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	163984721	163984721	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	caccagctacatcaatccttGagtatcctattgaacctagt	5	12	1	2	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	QKI-290	NM_206853	exon6	c.G904C	p.E302Q	ATCCTTGAGTATC	.	82	39	95	0	.	79	45	34	0	0	C	163984721	G	C	163984721	3	2	62	1	0	0	0	0	1	0	0	0	12908	1291	45	3	926	3	QKI	6	163984721	Missense_Mutation	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	2474332	163984721	7130346	579	12570										
C6orf118	168090	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	165703533	165703533	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	aagagtaagtcggttttcatCaattatatgtttctcagatg	8	5	3	2	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	C6orf118-90	NM_144980	exon7	c.G1144A	p.D382N	TTTCATCAATTAT	.	32	4	28	0	.	0	0	0	0	0	T	165703533	C	T	165703533	3	4	62	1	0	0	0	0	1	0	0	0	2329	826	29	3	277	3	C6orf118	6	165703533	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	1718812	165703533	5411534	580	12571										
FGFR1OP	11116	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	167417212	167417212	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	tttttcttgatctttataggTcgtttagtggctagtcttgt	9	5	3	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	FGFR1OP-683	NM_007045	exon4	c.T213C	p.G71G	TATAGGTCGTTTA	.	53	23	47	0	.	0	0	0	0	0	C	167417212	T	C	167417212	2	2	62	1	0	0	0	0	0	0	0	1	5883	1681	58	4		4	FGFR1OP	6	167417212	Silent	SNP	T	TCGA-PK-A5HB-01A-11D-A29I-10	1713679	167417212	3697855	581	12572										
CCR6	1235	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	167549924	167549924	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ggggaatattctggtggtgaTcacctttgctttttataaga	11	5	2	2	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CCR6-227	NM_004367	exon3	c.T206A	p.I69N	TGGTGATCACCTT	.	199	76	160	0	.	1	1	0	0	0	A	167549924	T	A	167549924	3	1	62	1	0	0	0	0	1	0	0	0	2951	1435	50	5	212	5	CCR6	6	167549924	Missense_Mutation	SNP	T	TCGA-PK-A5HB-01A-11D-A29I-10	132712	167549924	3565143	582	12573										
CCR6	1235	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	167550007	167550007	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ttgcagacatcctctttgttCttactctcccattctgggca	6	13	4	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CCR6-227	NM_004367	exon3	c.C289G	p.L97V	TTTGTTCTTACTC	.	141	56	131	0	.	0	0	0	0	0	G	167550007	C	G	167550007	3	3	62	1	0	0	0	0	1	0	0	0	2951	913	32	3	295	3	CCR6	6	167550007	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	83	167550007	3565060	583	12574										
THBS2	7058	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr6	169622343	169622343	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gcgttcctcaggtgctcgccCgtccccgtggtggagttcac	13	15	2	0	rs149118318		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	THBS2-95	NM_003247	exon20	c.G3222A	p.T1074T	CTCGCCCGTCCCC	.	107	45	77	0	C|1.000;T|0.000	2	2	0	0	0	T	169622343	C	T	169622343	2	4	62	1	0	0	0	0	0	0	0	1	15891	639	23	1		1	THBS2	6	169622343	Silent	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	2072336	169622343	1492724	584	12575										
THBS2	7058	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	169648601	169648601	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gtagaagggctcgtccagagCgaagctgtctatgaggtcgc	15	9	1	3	rs144458205	alternate_allele	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	THBS2-95	NM_003247	exon4	c.G520A	p.A174T	CCAGAGCGAAGCT	.	182	65	145	0	C|1.000;A|0.000	0	0	0	0	0	T	169648601	C	T	169648601	3	4	62	1	0	0	0	0	1	0	0	0	15891	768	27	1	3078	1	THBS2	6	169648601	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	26258	169648601	1466466	585	12576										
PSMB1	5689	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	170846402	170846402	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	tctctggtaagaccctactgGatcaaagctgtatacagccc	8	12	2	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PSMB1-91	NM_002793	exon5	c.C460T	p.P154S	CTACTGGATCAAA	.	111	46	86	1	.	359	213	145	0	1	A	170846402	G	A	170846402	3	1	62	1	0	0	0	0	1	0	0	0	12706	1174	41	3	273	3	PSMB1	6	170846402	Missense_Mutation	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	1197801	170846402	268665	586	12577										
PSMB1	5689	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr6	170862286	170862286	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gctctgtgcggttccatcccCaagtctctgccaggagccga	11	15	2	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PSMB1-91	NM_002793	exon1	c.G45T	p.L15F	CATCCCCAAGTCT	.	59	25	63	0	.	1	1	0	0	0	A	170862286	C	A	170862286	3	1	62	1	0	0	0	0	1	0	0	0	12706	593	21	3	704	3	PSMB1	6	170862286	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	15884	170862286	252781	587	12578										
GPR146	115330	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr7	1097616	1097616	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ggcttcgtgtggggtggcgcGctgctgaccagcttctcctc	15	13	1	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	GPR146-91	NM_138445	exon1	c.G465A	p.A155A	TGGCGCGCTGCTG	.	119	57	59	0	.	2	2	0	0	0	A	1097616	G	A	1097616	2	1	62	1	0	0	0	0	0	0	0	1	6672	1074	38	1		1	GPR146	7	1097616	Silent	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10		1097616	158041047	588	12579										
SDK1	221935	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	4285348	4285348	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ccggcggcctgcactactcaGacgaggacatctgcaacaag	11	14	2	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SDK1-138	NM_152744	exon44	c.G6292A	p.D2098N	TACTCAGACGAGG	.	155	54	102	0	.	2	2	0	0	0	A	4285348	G	A	4285348	3	1	62	1	0	0	0	0	1	0	0	0	14003	942	33	3	6466	3	SDK1	7	4285348	Missense_Mutation	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	3187732	4285348	154853315	589	12580										
SLC29A4	222962	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	5330852	5330852	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gtggagagactgaccctgcaCaccaggatcaccgcaggtgc	13	13	1	2	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SLC29A4-515	NM_153247	exon4	c.C399A	p.H133Q	CCTGCACACCAGG	.	96	44	83	0	.	2	0	2	0	0	A	5330852	C	A	5330852	3	1	62	1	0	0	0	0	1	0	0	0	14572	477	17	3	409	3	SLC29A4	7	5330852	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	1045504	5330852	153807811	590	12581										
RSPH10B	222967	hgsc.bcm.edu;broad.mit.edu	37	chr7	6006678	6006679	+	Frame_Shift_Ins	INS	-	-	AG													0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ttggaaaagtctagattatcINSagagagagatgagggagagc					novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	RSPH10B-23	NM_173565	exon3	c.70_71insCT	p.D24fs	GATTATCAGAGAG	.	292	59	251	0	.	0	0	0	0	0	AG	6006679	-	AG	6006678	7	5	62	1	0	1	1	0	0	0	0	0	13738	826	29	0	2618	0	RSPH10B	7	6006678	Frame_Shift_Ins	INS	-	TCGA-PK-A5HB-01A-11D-A29I-10	675826	6006678	153131985	591	12582										
RSPH10B	222967	hgsc.bcm.edu	37	chr7	6797368	6797369	+	Frame_Shift_Ins	INS	-	-	TC													0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	agtctgcccgctctccctcaINStctctctctgataatctaga					novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	RSPH10B-23	NM_173565	exon3	c.60_61insTC	p.S20fs	TCCCTCATCTCTC	.	158	32	116	0	.	0	0	0	0	0	TC	6797369	-	TC	6797368	7	5	62	1	0	1	1	0	0	0	0	0	13738	204	8	0	2751	0	RSPH10B	7	6797368	Frame_Shift_Ins	INS	-	TCGA-PK-A5HB-01A-11D-A29I-10	790690	6797368	152341295	592	12583										
GLCCI1	113263	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	8124630	8124630	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gagggatgtgagcgagtgaaGgtctttgaggaaatggcgta	18	3	1	3	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	GLCCI1-90	NM_138426	exon7	c.G1281A	p.K427K	AGTGAAGGTCTTT	.	132	49	120	0	.	4	3	1	0	0	A	8124630	G	A	8124630	2	1	62	1	0	0	0	0	0	0	0	1	6451	991	35	3		3	GLCCI1	7	8124630	Silent	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	1327262	8124630	151014033	593	12584										
ANKMY2	57037	ucsc.edu;bcgsc.ca	37	chr7	16649291	16649291	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	atgcttcgaaccagctgctgGaggagtgtagcttcacagta	12	9	1	0	rs149044205	byfrequency;alternate_allele	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ANKMY2-514	NM_020319	exon7	c.C846T	p.L282L	CTGCTGGAGGAGT	.	87	30	90	1	G|0.998;C|0.002	27	8	19	0	0	A	16649291	G	A	16649291	2	1	62	1	0	0	0	0	0	0	0	1	635	1161	41	3		3	ANKMY2	7	16649291	Silent	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	8524661	16649291	142489372	594	12585										
HDAC9	9734	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	18625005	18625005	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ccgtggtggaccctgttgtcCgtgagaagcaattgcagcag	14	10	0	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	HDAC9-227	NM_001204144	exon5	c.C250T	p.R84C	GTTGTCCGTGAGA	.	159	74	115	0	.	1	1	0	0	0	T	18625005	C	T	18625005	3	4	62	1	0	0	0	0	1	0	0	0	7035	652	23	1	130	1	HDAC9	7	18625005	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	1975714	18625005	140513658	595	12586										
TWISTNB	221830	hgsc.bcm.edu;bcgsc.ca	37	chr7	19739713	19739713	+	Frame_Shift_Del	DEL	C	C	-													0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	accttgtgatatttagttttCcccgaatgcagaatactcca					novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TWISTNB-91	NM_001002926	exon3	c.587delG	p.G196fs	AGTTTTCCCCGAA	.	68	26	82	1	.	0	0	0	0	0	-	19739713	C	-	19739713	7	5	62	1	0	1	0	1	0	0	0	0	16822	855	30	0	437	0	TWISTNB	7	19739713	Frame_Shift_Del	DEL	C	TCGA-PK-A5HB-01A-11D-A29I-10	1114708	19739713	139398950	596	12587										
MACC1	346389	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	chr7	20180768	20180768	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	tatacagaaaatcataggcaGgtttccacatcatctataaa	5	8	3	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	MACC1-93	NM_182762	exon7	c.C2360A	p.P787H	TAGGCAGGTTTCC	.	21	7	13	0	.	0	0	0	0	0	T	20180768	G	T	20180768	3	4	62	1	0	0	0	0	1	0	0	0	9171	1000	35	3	202	3	MACC1	7	20180768	Missense_Mutation	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	441055	20180768	138957895	597	12588										
SP4	6671	ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	21516828	21516828	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	aactcacacaagtgcatttgCagcaaggccagcagacttct	8	12	2	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SP4-95	NM_003112	exon4	c.C1810T	p.Q604X	CATTTGCAGCAAG	.	228	106	164	3	.	1	1	0	0	0	T	21516828	C	T	21516828	4	4	62	1	0	0	0	0	0	1	0	0	15001	711	25	3	1824	3	SP4	7	21516828	Nonsense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	1336060	21516828	137621835	598	12589										
DNAH11	8701	broad.mit.edu	37	chr7	21932249	21932249	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	atgcagcccaggaatgcactCagtggtgatgaactggggca	14	9	1	2	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	DNAH11-146	.	.	.	.	TGCACTCAGTGGT	.	47	3	50	0	.	113	112	1	0	0	T	21932249	C	T	21932249	2	4	62	1	0	0	0	0	0	0	0	1	4610	813	29	3		3	DNAH11	7	21932249	Silent	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	415421	21932249	137206414	599	12590										
DFNA5	1687	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	24738664	24738664	+	Nonsense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	atcatgaatgttctctgcctAaagcacagagtccattcagg	8	10	3	2	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	DFNA5-91	NM_001127453	exon10	c.T1472G	p.L491X	CTGCCTAAAGCAC	.	226	90	168	1	.	95	92	3	0	0	C	24738664	A	C	24738664	4	2	62	1	0	0	0	0	0	1	0	0	4465	372	13	5	22	5	DFNA5	7	24738664	Nonsense_Mutation	SNP	A	TCGA-PK-A5HB-01A-11D-A29I-10	2806415	24738664	134399999	600	12591										
ADCYAP1R1	117	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	31117638	31117638	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	tgtgggacaacatcacgtgtTggaagcccgcccatgtgggt	14	10	1	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ADCYAP1R1-91	NM_001118	exon4	c.T190G	p.W64G	ACGTGTTGGAAGC	.	329	124	266	1	.	2	2	0	0	0	G	31117638	T	G	31117638	3	3	62	1	0	0	0	0	1	0	0	0	303	1812	63	5	200	5	ADCYAP1R1	7	31117638	Missense_Mutation	SNP	T	TCGA-PK-A5HB-01A-11D-A29I-10	6378974	31117638	128021025	601	12592										
ANLN	54443	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	36450230	36450230	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	acagaacccccattattactCcaaatacaaaggccatccaa	3	14	0	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ANLN-517	NM_018685	exon6	c.C1204T	p.P402S	ATTACTCCAAATA	.	154	57	111	0	.	35	16	19	0	0	T	36450230	C	T	36450230	3	4	62	1	0	0	0	0	1	0	0	0	694	855	30	3	1226	3	ANLN	7	36450230	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	5332592	36450230	122688433	602	12593										
POU6F2	11281	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	39243895	39243895	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gaccaacaccaggccagtcaGacccaccccccatttccagt	6	19	1	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	POU6F2-90	NM_007252	exon4	c.G252A	p.Q84Q	CAGTCAGACCCAC	.	109	38	91	1	.	0	0	0	0	0	A	39243895	G	A	39243895	2	1	62	1	0	0	0	0	0	0	0	1	12314	933	33	3		3	POU6F2	7	39243895	Silent	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	2793665	39243895	119894768	603	12594										
TBRG4	9238	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	45144212	45144212	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	caccaggtggtaggagatggCccgcagcaagggcacggacc	16	12	0	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TBRG4-90	NM_001261834	exon4	c.G865A	p.A289T	AGATGGCCCGCAG	.	331	151	243	0	.	91	45	44	0	2	T	45144212	C	T	45144212	3	4	62	1	0	0	0	0	1	0	0	0	15686	739	26	3	1095	3	TBRG4	7	45144212	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	5900317	45144212	113994451	604	12595										
RAMP3	10268	hgsc.bcm.edu;bcgsc.ca	37	chr7	45222787	45222787	+	Frame_Shift_Del	DEL	A	A	-													0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gtttcaccaactgcaccgagAtggaggccaatgtcgtgggc					novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	RAMP3-90	NM_005856	exon3	c.223delA	p.M75fs	ACCGAGATGGAGG	.	57	22	43	0	.	0	0	0	0	0	-	45222787	A	-	45222787	7	5	62	1	0	1	0	1	0	0	0	0	13058	333	12	0	233	0	RAMP3	7	45222787	Frame_Shift_Del	DEL	A	TCGA-PK-A5HB-01A-11D-A29I-10	78575	45222787	113915876	605	12596										
IGFBP3	3486	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	45954540	45954540	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gcttcctgcctttggaagggCgacactgtgggagagaaaca	14	9	0	1	rs17847676		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	IGFBP3-1009	NM_001013398	exon4	c.G773A	p.R258H	GAAGGGCGACACT	.	124	45	92	0	.	0	0	0	0	0	T	45954540	C	T	45954540	3	4	62	1	0	0	0	0	1	0	0	0	7601	768	27	1	124	1	IGFBP3	7	45954540	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	731753	45954540	113184123	606	12597										
PKD1L1	168507	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	47983029	47983029	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	tccaggagggctacagctgcAcagatgaagaccccagctct	11	13	1	3	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PKD1L1-145	NM_138295	exon2	c.T124C	p.C42R	AGCTGCACAGATG	.	343	138	271	0	.	1	1	0	0	0	G	47983029	A	G	47983029	3	3	62	1	0	0	0	0	1	0	0	0	11993	159	6	4	8649	4	PKD1L1	7	47983029	Missense_Mutation	SNP	A	TCGA-PK-A5HB-01A-11D-A29I-10	2028489	47983029	111155634	607	12598										
ABCA13	154664	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	48311465	48311465	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gaacaaatgaactttcttttAtcatttgtggaattttttga	6	4	2	2	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ABCA13-521	NM_152701	exon17	c.A2202G	p.L734L	TCTTTTATCATTT	.	69	34	79	0	.	0	0	0	0	0	G	48311465	A	G	48311465	2	3	62	1	0	0	0	0	0	0	0	1	31	446	16	4		4	ABCA13	7	48311465	Silent	SNP	A	TCGA-PK-A5HB-01A-11D-A29I-10	328436	48311465	110827198	608	12599										
COBL	23242	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	51096471	51096471	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	cccaggtgtttttccacagaGttgcacctccagaactctct	7	14	1	2	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	COBL-95	NM_015198	exon10	c.C2322T	p.N774N	CACAGAGTTGCAC	.	88	36	59	0	.	0	0	0	0	0	A	51096471	G	A	51096471	2	1	62	1	0	0	0	0	0	0	0	1	3659	1020	36	3		3	COBL	7	51096471	Silent	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	2785006	51096471	108042192	609	12600										
AUTS2	26053	broad.mit.edu	37	chr7	70255070	70255070	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gagagtgccaggcccaacagCacctcgagccgggaggccga	15	14	0	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	AUTS2-92	NM_015570	exon19	c.C2868A	p.S956R	CAACAGCACCTCG	.	199	12	78	4	.	3	3	0	0	0	A	70255070	C	A	70255070	3	1	62	1	0	0	0	0	1	0	0	0	1226	709	25	3	3087	3	AUTS2	7	70255070	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	19158599	70255070	88883593	610	12601										
AUTS2	26053	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr7	70255628	70255628	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	tctgtggaccctcggcgggaGcacgagcggggaggccacct	17	13	1	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	AUTS2-92	NM_015570	exon19	c.G3426A	p.E1142E	GCGGGAGCACGAG	.	113	49	53	0	.	18	11	7	0	0	A	70255628	G	A	70255628	2	1	62	1	0	0	0	0	0	0	0	1	1226	962	34	3		3	AUTS2	7	70255628	Silent	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	558	70255628	88883035	611	12602										
TYW1B	441250	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	72159704	72159704	+	RNA	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gccaaggcttttaaactgtcAaggaattgctgccagaaatc	9	9	1	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	.	.	.	.	.	ACTGTCAAGGAAT	.	122	55	101	1	.	0	0	0	0	0	C	72159704	A	C	72159704	1	2	62	0	1	0	0	0	0	0	0	0	16857	117	5	5		5	TYW1B	7	72159704	RNA	SNP	A	TCGA-PK-A5HB-01A-11D-A29I-10	1904076	72159704	86978959	612	12603										
FZD9	8326	ucsc.edu;bcgsc.ca	37	chr7	72850023	72850023	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	cgcgcccccgggagctacggAcgtggcacgcactgccacta	13	17	0	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	FZD9-1082	NM_003508	exon1	c.A1686G	p.G562G	CTACGGACGTGGC	.	272	95	162	2	.	4	3	1	0	0	G	72850023	A	G	72850023	2	3	62	1	0	0	0	0	0	0	0	1	6156	262	10	4		4	FZD9	7	72850023	Silent	SNP	A	TCGA-PK-A5HB-01A-11D-A29I-10	690319	72850023	86288640	613	12604										
TBL2	26608	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	72985169	72985169	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ctgggcgttgggggagagggCcaggcggcacggcgcggcac	22	11	0	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TBL2-90	NM_012453	exon7	c.G1012A	p.A338T	AGAGGGCCAGGCG	.	58	23	32	0	.	40	23	17	0	0	T	72985169	C	T	72985169	3	4	62	1	0	0	0	0	1	0	0	0	15679	739	26	3	335	3	TBL2	7	72985169	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	135146	72985169	86153494	614	12605										
WBSCR28	135886	ucsc.edu;bcgsc.ca	37	chr7	73279962	73279962	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ggtacagctgagacgtctgtAttggtgggtggagactatga	16	5	1	3	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	WBSCR28-90	NM_182504	exon3	c.A557T	p.Y186F	GTCTGTATTGGTG	.	301	124	272	2	.	0	0	0	0	0	T	73279962	A	T	73279962	3	4	62	1	0	0	0	0	1	0	0	0	17305	449	16	5	567	5	WBSCR28	7	73279962	Missense_Mutation	SNP	A	TCGA-PK-A5HB-01A-11D-A29I-10	294793	73279962	85858701	615	12606										
GTF2IRD2B	389524	bcgsc.ca	37	chr7	74538966	74538966	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	tagggacaacagtgatggtgCctgttccctatgagaagatg	13	7	0	3	rs2539083	bycluster;byfrequency	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	GTF2IRD2B-45	NM_001003795	exon5	c.C388T	p.P130S	ATGGTGCCTGTTC	.	1168	33	901	2	C|0.500;T|0.500	12	12	0	0	0	T	74538966	C	T	74538966	3	4	62	1	0	0	0	0	1	0	0	0	6891	739	26	3	402	3	GTF2IRD2B	7	74538966	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	1259004	74538966	84599697	616	12607										
KIAA1324L	222223	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	86537770	86537770	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	catcttcacttacttataaaAgaaatgcacatctggtattt	4	8	3	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	KIAA1324L-97	NM_001142749	exon17	c.T2449C	p.F817L	TATAAAAGAAATG	.	46	17	33	0	.	0	0	0	0	0	G	86537770	A	G	86537770	3	3	62	1	0	0	0	0	1	0	0	0	8245	72	3	4	664	4	KIAA1324L	7	86537770	Missense_Mutation	SNP	A	TCGA-PK-A5HB-01A-11D-A29I-10	11998804	86537770	72600893	617	12608										
CROT	54677	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	86998758	86998758	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ccgagcttttgtctttgatgTaatacatgaaggatgtttgg	11	5	1	2	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CROT-280	NM_001143935	exon8	c.T698C	p.V233A	TTGATGTAATACA	.	143	57	116	1	.	11	1	10	0	0	C	86998758	T	C	86998758	3	2	62	1	0	0	0	0	1	0	0	0	3900	1638	57	4	720	4	CROT	7	86998758	Missense_Mutation	SNP	T	TCGA-PK-A5HB-01A-11D-A29I-10	460988	86998758	72139905	618	12609										
ZNF804B	219578	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	88963113	88963113	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gcaggtttgcaaataaagatAcacaccttaccaaggaaaaa	7	8	0	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ZNF804B-101	NM_181646	exon4	c.A817G	p.T273A	AAAGATACACACC	.	131	66	121	0	.	0	0	0	0	0	G	88963113	A	G	88963113	3	3	62	1	0	0	0	0	1	0	0	0	18208	391	14	4	831	4	ZNF804B	7	88963113	Missense_Mutation	SNP	A	TCGA-PK-A5HB-01A-11D-A29I-10	1964355	88963113	70175550	619	12610										
PEX1	5189	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	92134188	92134188	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	tctgagaaagccacctctagGgttttttgtatgttttcaag	9	7	3	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PEX1-91	NM_000466	exon12	c.C1929T	p.T643T	CTCTAGGGTTTTT	.	64	22	62	0	.	11	7	4	0	0	A	92134188	G	A	92134188	2	1	62	1	0	0	0	0	0	0	0	1	11764	1219	43	3		3	PEX1	7	92134188	Silent	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	3171075	92134188	67004475	620	12611										
ZNF394	84124	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr7	99091800	99091800	+	Frame_Shift_Del	DEL	A	A	-													0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	tggagctgcctctgggtctcAaaaaggctggaatgatggaa					novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ZNF394-90	NM_032164	exon3	c.1038delT	p.F346fs	GGTCTCAAAAAGG	.	242	107	192	0	.	0	0	0	0	0	-	99091800	A	-	99091800	7	5	62	1	0	1	0	1	0	0	0	0	17917	127	5	0	651	0	ZNF394	7	99091800	Frame_Shift_Del	DEL	A	TCGA-PK-A5HB-01A-11D-A29I-10	6957612	99091800	60046863	621	12612										
FAM200A	221786	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr7	99144838	99144839	+	Frame_Shift_Del	DEL	AT	AT	-													0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gttgcaataatgttggaaacAtatagtagctagggcggtta					novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	AT	AT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	FAM200A-90	NM_145111	exon2	c.1192_1193del	p.398_398del	GGAAACATATAGT	.	108	39	70	0	.	0	0	0	0	0	-	99144839	AT	-	99144838	7	5	62	1	0	1	0	1	0	0	0	0	5552	217	8	0	532	0	FAM200A	7	99144838	Frame_Shift_Del	DEL	AT	TCGA-PK-A5HB-01A-11D-A29I-10	53038	99144838	59993825	622	12613										
TRIM4	89122	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	99507254	99507254	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	actttcttcatcttggccacGagattacgctgagacttaag	8	10	3	2	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TRIM4-227	NM_033017	exon3	c.C501T	p.L167L	GGCCACGAGATTA	.	182	76	140	0	.	50	22	28	0	0	A	99507254	G	A	99507254	2	1	62	1	0	0	0	0	0	0	0	1	16552	1045	37	1		1	TRIM4	7	99507254	Silent	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	362416	99507254	59631409	623	12614										
COPS6	10980	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	99688715	99688715	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	tggccacagaggaagcggaaCgcattggtgtagaccacgta	14	9	0	2	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	COPS6-658	NM_006833	exon7	c.C589T	p.R197C	GCGGAACGCATTG	.	146	14	105	0	.	248	231	17	0	0	T	99688715	C	T	99688715	3	4	62	1	0	0	0	0	1	0	0	0	3743	536	19	1	615	1	COPS6	7	99688715	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	181461	99688715	59449948	624	12615										
EPHB4	2050	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	100417182	100417182	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	cagcccccaagtctcaccctCtcggtcagtggtgacattga	9	15	3	2	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	EPHB4-1446	NM_004444	exon6	c.G1294T	p.E432X	CACCCTCTCGGTC	.	146	55	100	1	.	0	0	0	0	0	A	100417182	C	A	100417182	4	1	62	1	0	0	0	0	0	1	0	0	5190	922	32	3	1717	3	EPHB4	7	100417182	Nonsense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	728467	100417182	58721481	625	12616										
ACHE	43	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr7	100490017	100490017	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gcgaagattttctcctctgcCgtgtagtttcgagaggggtc	13	9	2	2	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ACHE-92	NM_000665	exon3	c.G1491T	p.T497T	CTCTGCCGTGTAG	.	126	8	89	0	.	5	5	0	0	0	A	100490017	C	A	100490017	2	1	62	1	0	0	0	0	0	0	0	1	141	639	23	2		2	ACHE	7	100490017	Silent	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	72835	100490017	58648646	626	12617										
NAPEPLD	222236	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr7	102760123	102760123	+	Frame_Shift_Del	DEL	A	A	-													0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	aataaccagtatctcctgcgAaaaaaaatcgattccaaggc					novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	NAPEPLD-227	NM_001122838	exon3	c.842delT	p.F281fs	CCTGCGAAAAAAA	.	57	31	38	0	.	0	0	0	0	0	-	102760123	A	-	102760123	7	5	62	1	0	1	0	1	0	0	0	0	10191	246	9	0	351	0	NAPEPLD	7	102760123	Frame_Shift_Del	DEL	A	TCGA-PK-A5HB-01A-11D-A29I-10	2270106	102760123	56378540	627	12618										
RELN	5649	bcgsc.ca	37	chr7	103230147	103230147	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	agttctctggagtttccttcGcatcctttgcctgcagaagc	9	12	1	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	RELN-574	NM_173054	exon28	c.C4041T	p.C1347C	TCCTTCGCATCCT	.	154	64	134	3	.	0	0	0	0	0	A	103230147	G	A	103230147	2	1	62	1	0	0	0	0	0	0	0	1	13255	1079	38	1		1	RELN	7	103230147	Silent	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	470024	103230147	55908516	628	12619										
ATXN7L1	222255	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	105255170	105255170	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ggaagatacacagcactgggGttgctgaaaggctgcaaaac	13	8	0	2	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ATXN7L1-90	NM_020725	exon10	c.C1611T	p.N537N	ACTGGGGTTGCTG	.	136	53	117	0	.	2	0	2	0	0	A	105255170	G	A	105255170	2	1	62	1	0	0	0	0	0	0	0	1	1217	1252	44	3		3	ATXN7L1	7	105255170	Silent	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	2025023	105255170	53883493	629	12620										
PIK3CG	5294	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	106508801	106508801	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	atggatattcccgaaagccaAagcgaacaggattttgtgct	10	8	0	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PIK3CG-1316	NM_002649	exon2	c.A795G	p.Q265Q	AAGCCAAAGCGAA	.	86	35	77	0	.	1	1	0	0	0	G	106508801	A	G	106508801	2	3	62	1	0	0	0	0	0	0	0	1	11945	11	1	4		4	PIK3CG	7	106508801	Silent	SNP	A	TCGA-PK-A5HB-01A-11D-A29I-10	1253631	106508801	52629862	630	12621										
COG5	10466	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	106844034	106844034	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ctggtgcaaattctttgcctTctctacttctcactgattga	6	11	3	2	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	COG5-93	NM_006348	exon22	c.A2510G	p.E837G	TTGCCTTCTCTAC	.	80	32	75	0	.	44	22	22	0	0	C	106844034	T	C	106844034	3	2	62	1	0	0	0	0	1	0	0	0	3667	1783	62	4	76	4	COG5	7	106844034	Missense_Mutation	SNP	T	TCGA-PK-A5HB-01A-11D-A29I-10	335233	106844034	52294629	631	12622										
DUS4L	11062	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	107217974	107217974	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gtcaagcacatcagcaatcaTagattaccttacagaccatt	5	11	3	2	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	DUS4L-90	NM_001270419	exon8	c.T923C	p.I308T	CAATCATAGATTA	.	116	47	125	0	.	6	3	3	0	0	C	107217974	T	C	107217974	3	2	62	1	0	0	0	0	1	0	0	0	4819	1406	49	4	945	4	DUS4L	7	107217974	Missense_Mutation	SNP	T	TCGA-PK-A5HB-01A-11D-A29I-10	373940	107217974	51920689	632	12623										
LAMB4	22798	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	107696427	107696427	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ggatcacagatgggcttctgGgtacctgccctgttacaatc	11	11	2	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	LAMB4-140	NM_007356	exon25	c.C3405A	p.T1135T	CTTCTGGGTACCT	.	91	45	68	0	.	0	0	0	0	0	T	107696427	G	T	107696427	2	4	62	1	0	0	0	0	0	0	0	1	8635	1219	43	3		3	LAMB4	7	107696427	Silent	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	478453	107696427	51442236	633	12624										
PNPLA8	50640	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	108112846	108112846	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gaacataagcatatactcatCacaattttgaaaagaatgga	6	6	2	2	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PNPLA8-135	NM_001256008	exon10	c.G2348A	p.X783X	ACTCATCACAATT	.	259	94	210	0	.	62	30	32	0	0	T	108112846	C	T	108112846	2	4	62	1	0	0	0	0	0	0	0	1	12200	837	29	3		3	PNPLA8	7	108112846	Silent	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	416419	108112846	51025817	634	12625										
LRRN3	54674	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	110764462	110764462	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ggtgtcctggaaagcaagttCtaaaattctcaaatctagtg	9	7	3	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	LRRN3-154	NM_018334	exon2	c.C1634T	p.S545F	CAAGTTCTAAAAT	.	66	37	51	1	.	0	0	0	0	0	T	110764462	C	T	110764462	3	4	62	1	0	0	0	0	1	0	0	0	9063	913	32	3	1636	3	LRRN3	7	110764462	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	2651616	110764462	48374201	635	12626										
DOCK4	9732	ucsc.edu;bcgsc.ca	37	chr7	111428773	111428773	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	tttgccttctgacatcaggcTatccagtttgtcaattagct	7	10	3	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	DOCK4-26	NM_014705	exon32	c.A3346G	p.S1116G	TCAGGCTATCCAG	.	207	108	162	2	.	3	3	0	0	0	C	111428773	T	C	111428773	3	2	62	1	0	0	0	0	1	0	0	0	4700	1522	53	4	2638	4	DOCK4	7	111428773	Missense_Mutation	SNP	T	TCGA-PK-A5HB-01A-11D-A29I-10	664311	111428773	47709890	636	12627										
MDFIC	29969	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	114655908	114655908	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	tgcccttgtgatatggactgTggcatcatggatgcctgttg	13	8	1	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	MDFIC-91	NM_199072	exon5	c.T987C	p.C329C	GGACTGTGGCATC	.	113	45	89	0	.	10	3	7	0	0	C	114655908	T	C	114655908	2	2	62	1	0	0	0	0	0	0	0	1	9433	1702	59	4		4	MDFIC	7	114655908	Silent	SNP	T	TCGA-PK-A5HB-01A-11D-A29I-10	3227135	114655908	44482755	637	12628										
ASZ1	136991	broad.mit.edu;bcgsc.ca	37	chr7	117062381	117062381	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	agcatacataaggggagtccAtccatactgaaagttggaat	10	7	0	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ASZ1-515	NM_130768	exon3	c.T238C	p.W80R	GAGTCCATCCATA	.	74	36	77	2	.	0	0	0	0	0	G	117062381	A	G	117062381	3	3	62	1	0	0	0	0	1	0	0	0	1070	217	8	4	1233	4	ASZ1	7	117062381	Missense_Mutation	SNP	A	TCGA-PK-A5HB-01A-11D-A29I-10	2406473	117062381	42076282	638	12629										
PTPRZ1	5803	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	121608015	121608015	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ttttccctaggagcactgaaTcaaaaaaattggggaaagaa	9	6	1	2	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PTPRZ1-699	NM_001206838	exon3	c.T135A	p.N45K	ACTGAATCAAAAA	.	130	58	104	0	.	0	0	0	0	0	A	121608015	T	A	121608015	3	1	62	1	0	0	0	0	1	0	0	0	12849	1432	50	5	145	5	PTPRZ1	7	121608015	Missense_Mutation	SNP	T	TCGA-PK-A5HB-01A-11D-A29I-10	4545634	121608015	37530648	639	12630										
GPR37	2861	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	124404170	124404170	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ctccgcatgtagtagttgtgGcacacgatgcacatcaccgc	10	13	1	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	GPR37-523	NM_005302	exon1	c.C861T	p.C287C	GTTGTGGCACACG	.	162	58	127	0	.	0	0	0	0	0	A	124404170	G	A	124404170	2	1	62	1	0	0	0	0	0	0	0	1	6711	1195	42	3		3	GPR37	7	124404170	Silent	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	2796155	124404170	34734493	640	12631										
GRM8	2918	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	126086177	126086177	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	cggaaactctacagatgactTactgttggtttcaagactct	8	9	3	3	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	GRM8-581	NM_001127323	exon10	c.A2680G	p.K894E	ATGACTTACTGTT	.	150	71	117	0	.	0	0	0	0	0	C	126086177	T	C	126086177	3	2	62	1	0	0	0	0	1	0	0	0	6824	1763	61	4	104	4	GRM8	7	126086177	Missense_Mutation	SNP	T	TCGA-PK-A5HB-01A-11D-A29I-10	1682007	126086177	33052486	641	12632										
IMPDH1	3614	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	128038611	128038611	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gtctcggttcttcttcaggtCggtgcgggcgatgatggcca	15	10	4	1	rs121912550		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	IMPDH1-230	NM_000883	exon10	c.G931A	p.D311N	TCAGGTCGGTGCG	.	118	54	91	0	.	15	9	6	0	0	T	128038611	C	T	128038611	3	4	62	1	0	0	0	0	1	0	0	0	7747	884	31	1	900	1	IMPDH1	7	128038611	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	1952434	128038611	31100052	642	12633										
IRF5	3663	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	128585921	128585921	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ctgggccaaggagacagggaAatacaccgaaggcgtggatg	16	8	0	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	IRF5-226	NM_001098627	exon3	c.A218T	p.K73I	CAGGGAAATACAC	.	142	66	122	1	.	0	0	0	0	0	T	128585921	A	T	128585921	3	4	62	1	0	0	0	0	1	0	0	0	7854	14	1	5	224	5	IRF5	7	128585921	Missense_Mutation	SNP	A	TCGA-PK-A5HB-01A-11D-A29I-10	547310	128585921	30552742	643	12634										
LRGUK	136332	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	133842788	133842788	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	aacgtagtcatggtgtatagGcaatgagatagaagaaatca	11	4	2	3	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	LRGUK-227	NM_144648	exon6	c.G671A	p.G224D	GTATAGGCAATGA	.	114	37	85	0	.	0	0	0	0	0	A	133842788	G	A	133842788	3	1	62	1	0	0	0	0	1	0	0	0	8970	1217	42	3	693	3	LRGUK	7	133842788	Missense_Mutation	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	5256867	133842788	25295875	644	12635										
NUP205	23165	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	135262571	135262571	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	atctcattaaggagtgcaggCagtctcttgcagaaagcctt	10	9	2	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	NUP205-207	NM_015135	exon6	c.C676T	p.Q226X	TGCAGGCAGTCTC	.	108	44	57	0	.	5	5	0	0	0	T	135262571	C	T	135262571	4	4	62	1	0	0	0	0	0	1	0	0	10788	711	25	3	698	3	NUP205	7	135262571	Nonsense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	1419783	135262571	23876092	645	12636										
TBXAS1	6916	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	139655387	139655387	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ttcgaattctgcatccccagAcctatcctggttttactctg	6	13	2	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TBXAS1-155	NM_001166253	exon8	c.A810G	p.R270R	CCCCAGACCTATC	.	75	30	43	0	.	2	2	0	0	0	G	139655387	A	G	139655387	2	3	62	1	0	0	0	0	0	0	0	1	15701	272	10	4		4	TBXAS1	7	139655387	Silent	SNP	A	TCGA-PK-A5HB-01A-11D-A29I-10	4392816	139655387	19483276	646	12637										
DENND2A	27147	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	140246681	140246681	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gggcttccatgacacttctcAtgagtggctgaaccagggca	12	11	1	3	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	DENND2A-138	NM_015689	exon11	c.T2096A	p.M699K	CTTCTCATGAGTG	.	182	73	150	0	.	4	4	0	0	0	T	140246681	A	T	140246681	3	4	62	1	0	0	0	0	1	0	0	0	4440	217	8	5	965	5	DENND2A	7	140246681	Missense_Mutation	SNP	A	TCGA-PK-A5HB-01A-11D-A29I-10	591294	140246681	18891982	647	12638										
AGK	55750	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	141333740	141333740	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	tatttgcaatgaccggccttCgatggggatctttcagagat	11	8	2	2	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	AGK-290	NM_018238	exon10	c.C628T	p.R210X	GGCCTTCGATGGG	.	84	35	74	0	.	28	27	1	0	0	T	141333740	C	T	141333740	4	4	62	1	0	0	0	0	0	1	0	0	383	876	31	1	662	1	AGK	7	141333740	Nonsense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	1087059	141333740	17804923	648	12639										
MGAM	8972	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	141736707	141736707	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	acatccgctatactctattgCcctacctatacaccctcttc	2	17	2	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	MGAM-70	NM_004668	exon18	c.C2161T	p.P721S	CTATTGCCCTACC	.	104	48	107	0	.	0	0	0	0	0	T	141736707	C	T	141736707	3	4	62	1	0	0	0	0	1	0	0	0	9569	739	26	3	2227	3	MGAM	7	141736707	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	402967	141736707	17401956	649	12640										
MGAM	8972	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	141805626	141805626	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	cctaacaggtattaagcatcGatgtgactgacagaaacatc	8	9	0	3	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	MGAM-70	NM_004668	exon48	c.G5509A	p.D1837N	AGCATCGATGTGA	.	80	30	95	1	.	3	2	1	0	0	A	141805626	G	A	141805626	3	1	62	1	0	0	0	0	1	0	0	0	9569	1058	37	1	5695	1	MGAM	7	141805626	Missense_Mutation	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	68919	141805626	17333037	650	12641										
PRSS1	5644	bcgsc.ca	37	chr7	142458511	142458511	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ttctggctaccacttctgtgGtggctccctcatcaacgaac	8	14	4	0	rs138464021	byfrequency	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PRSS1-577	NM_002769	exon2	c.G146T	p.G49V	TCTGTGGTGGCTC	.	283	21	176	1	G|0.951;T|0.049	0	0	0	0	0	T	142458511	G	T	142458511	3	4	62	1	0	0	0	0	1	0	0	0	12646	1261	44	3	152	3	PRSS1	7	142458511	Missense_Mutation	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	652885	142458511	16680152	651	12642										
EPHB6	2051	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	142562373	142562373	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	tgcagagccagaggaggatgGagtagggggccaggcaggag	21	6	0	2	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	EPHB6-1489	NM_004445	exon7	c.G815A	p.G272E	AGGATGGAGTAGG	.	102	26	53	0	.	1	1	0	0	0	A	142562373	G	A	142562373	3	1	62	1	0	0	0	0	1	0	0	0	5191	1174	41	3	825	3	EPHB6	7	142562373	Missense_Mutation	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	103862	142562373	16576290	652	12643										
OR6V1	346517	broad.mit.edu;mdanderson.org	37	chr7	142750331	142750331	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	aatcagacagttaaaacagtGctacaggggcagatgcagag	12	7	1	3	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	OR6V1-23	NM_001001667	exon1	c.G894A	p.V298V	AACAGTGCTACAG	.	48	19	31	0	.	0	0	0	0	0	A	142750331	G	A	142750331	2	1	62	1	0	0	0	0	0	0	0	1	11240	1306	46	3		3	OR6V1	7	142750331	Silent	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	187958	142750331	16388332	653	12644										
EPHA1	2041	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr7	143088818	143088818	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	cgagccactcagagacggttCgatatgggatcccatctgag	12	11	2	2	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	EPHA1-1436	NM_005232	exon17	c.G2747A	p.R916Q	ACGGTTCGATATG	.	136	8	116	0	.	0	0	0	0	0	T	143088818	C	T	143088818	3	4	62	1	0	0	0	0	1	0	0	0	5178	884	31	1	191	1	EPHA1	7	143088818	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	338487	143088818	16049845	654	12645										
OR2F2	135948	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	143632752	143632752	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	tgcatggagggctgtgtgctAggttggccatcacatcctgg	15	9	1	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	OR2F2-94	NM_001004685	exon1	c.A427G	p.R143G	TGTGCTAGGTTGG	.	342	136	273	1	.	0	0	0	0	0	G	143632752	A	G	143632752	3	3	62	1	0	0	0	0	1	0	0	0	11026	411	15	4	429	4	OR2F2	7	143632752	Missense_Mutation	SNP	A	TCGA-PK-A5HB-01A-11D-A29I-10	543934	143632752	15505911	655	12646										
ZNF467	168544	hgsc.bcm.edu	37	chr7	149462337	149462337	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ggggcgcgctggggcaccacGggatcggatcctgggccgca	19	13	0	0	rs855667	byfrequency	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ZNF467-90	NM_207336	exon5	c.C1254T	p.P418P	CACCACGGGATCG	.	6	4	0	0	G|0.763;A|0.237	2	1	1	0	0	A	149462337	G	A	149462337	2	1	62	1	0	0	0	0	0	0	0	1	17964	1103	39	1		1	ZNF467	7	149462337	Silent	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	5829585	149462337	9676326	656	12647										
SSPO	23145	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	149493469	149493469	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ctgctggcagcttttccccaGaaactgggatgacctggacc	11	13	0	2	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	.	NM_198455	exon44	c.G6545A	p.R2182K	TCCCCAGAAACTG	.	165	72	135	1	.	0	0	0	0	0	A	149493469	G	A	149493469	3	1	62	1	0	0	0	0	1	0	0	0	15226	942	33	3	6715	3	SSPO	7	149493469	Missense_Mutation	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	31132	149493469	9645194	657	12648										
SSPO	23145	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr7	149508059	149508059	+	Frame_Shift_Del	DEL	C	C	-													0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gcccacgaggggcacctctaCcccccgggcagcactgtggt					novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	.	NM_198455	exon66	c.9453delC	p.Y3151fs	CCTCTACCCCCCG	.	83	32	58	0	.	0	0	0	0	0	-	149508059	C	-	149508059	7	5	62	1	0	1	0	1	0	0	0	0	15226	518	18	0	9709	0	SSPO	7	149508059	Frame_Shift_Del	DEL	C	TCGA-PK-A5HB-01A-11D-A29I-10	14590	149508059	9630604	658	12649										
LRRC61	65999	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	150034194	150034194	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gccagctagctgtgctcaatGtctccaacaatcggctgacg	10	13	2	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	LRRC61-90	NM_023942	exon2	c.G244A	p.V82I	CTCAATGTCTCCA	.	97	34	60	1	.	0	0	0	0	0	A	150034194	G	A	150034194	3	1	62	1	0	0	0	0	1	0	0	0	9044	1377	48	3	246	3	LRRC61	7	150034194	Missense_Mutation	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	526135	150034194	9104469	659	12650										
REPIN1	29803	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	150069842	150069842	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	cagaagtccaacctggtgtcGcaccggcgcatccacacggg	12	15	0	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	REPIN1-69	NM_001099695	exon3	c.G1683A	p.S561S	GGTGTCGCACCGG	.	149	64	48	0	.	59	33	26	0	0	A	150069842	G	A	150069842	2	1	62	1	0	0	0	0	0	0	0	1	13262	1074	38	1		1	REPIN1	7	150069842	Silent	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	35648	150069842	9068821	660	12651										
GIMAP8	155038	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	150174335	150174335	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ggacatgggacggacaggagGtggtggttgtggacactcct	18	7	0	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	GIMAP8-95	NM_175571	exon5	c.G1465A	p.V489M	CAGGAGGTGGTGG	.	212	83	162	0	.	1	1	0	0	0	A	150174335	G	A	150174335	3	1	62	1	0	0	0	0	1	0	0	0	6405	1261	44	3	1479	3	GIMAP8	7	150174335	Missense_Mutation	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	104493	150174335	8964328	661	12652										
SLC4A2	6522	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr7	150771569	150771569	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	tacagtattgaggacacctaTacccaggtaaggtgctgccc	10	11	0	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SLC4A2-90	NM_003040	exon18	c.T2874C	p.Y958Y	CACCTATACCCAG	.	90	39	91	0	.	0	0	0	0	0	C	150771569	T	C	150771569	2	2	62	1	0	0	0	0	0	0	0	1	14689	1413	49	4		4	SLC4A2	7	150771569	Silent	SNP	T	TCGA-PK-A5HB-01A-11D-A29I-10	597234	150771569	8367094	662	12653										
SHH	6469	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	chr7	155596348	155596348	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	tcaggtccttcaccagcttgGtgccgccctgctccaggtgc	11	16	2	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SHH-1134	NM_000193	exon3	c.C635T	p.T212I	AGCTTGGTGCCGC	.	81	36	15	0	.	0	0	0	0	0	A	155596348	G	A	155596348	3	1	62	1	0	0	0	0	1	0	0	0	14314	1261	44	3	757	3	SHH	7	155596348	Missense_Mutation	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	4824779	155596348	3542315	663	12654										
VIPR2	7434	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	158829448	158829448	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	aaggggcacacttaccccatCcgatcaggaggtaggccagg	13	12	1	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	VIPR2-91	NM_003382	exon7	c.G743C	p.G248A	CCCCATCCGATCA	.	148	56	111	1	.	0	0	0	0	0	G	158829448	C	G	158829448	3	3	62	1	0	0	0	0	1	0	0	0	17208	855	30	3	601	3	VIPR2	7	158829448	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	3233100	158829448	309215	664	12655										
CSMD1	64478	hgsc.bcm.edu;bcgsc.ca	37	chr8	2909997	2909997	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	cacttacgcttacacgtgggCggcttccccttgttactcca	8	15	0	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CSMD1-86	NM_033225	exon50	c.G7647A	p.P2549P	CGTGGGCGGCTTC	.	72	5	89	0	.	0	0	0	0	0	T	2909997	C	T	2909997	2	4	62	1	0	0	0	0	0	0	0	1	3950	755	27	1		1	CSMD1	8	2909997	Silent	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10		2909997	143454025	665	12656										
RP1L1	94137	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr8	10465815	10465815	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gcaccttctgactctggctcGtcctccccttcagtctccag	7	18	4	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	RP1L1-139	NM_178857	exon4	c.C5793T	p.D1931D	TGGCTCGTCCTCC	.	26	18	40	0	.	0	0	0	0	0	A	10465815	G	A	10465815	2	1	62	1	0	0	0	0	0	0	0	1	13568	1136	40	1		1	RP1L1	8	10465815	Silent	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	7555818	10465815	135898207	666	12657										
LONRF1	91694	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr8	12580711	12580711	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	acagctggtatcgtgggtctAcagggagaactgcaagaagc	14	8	1	2	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	LONRF1-91	NM_152271	exon12	c.T2216C	p.V739A	GGGTCTACAGGGA	.	51	37	105	0	.	4	2	2	0	0	G	12580711	A	G	12580711	3	3	62	1	0	0	0	0	1	0	0	0	8921	391	14	4	109	4	LONRF1	8	12580711	Missense_Mutation	SNP	A	TCGA-PK-A5HB-01A-11D-A29I-10	2114896	12580711	133783311	667	12658										
LZTS1	11178	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	20110358	20110358	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	cctctcgtaggacctgagctTggtctccagcaggtcctgct	11	14	2	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	LZTS1-91	NM_021020	exon2	c.A1084G	p.K362E	TGAGCTTGGTCTC	.	73	63	92	1	.	5	4	1	0	0	C	20110358	T	C	20110358	3	2	62	1	0	0	0	0	1	0	0	0	9166	1821	63	4	714	4	LZTS1	8	20110358	Missense_Mutation	SNP	T	TCGA-PK-A5HB-01A-11D-A29I-10	7529647	20110358	126253664	668	12659										
NEFM	4741	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr8	24775356	24775356	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gccgaaatcaccagtggaagAgaaaggcaagtctcctgtgt	12	9	2	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	NEFM-577	NM_005382	exon3	c.A1988G	p.E663G	TGGAAGAGAAAGG	.	175	132	222	0	.	2	1	1	0	0	G	24775356	A	G	24775356	3	3	62	1	0	0	0	0	1	0	0	0	10345	304	11	4	1998	4	NEFM	8	24775356	Missense_Mutation	SNP	A	TCGA-PK-A5HB-01A-11D-A29I-10	4664998	24775356	121588666	669	12660										
DOCK5	80005	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr8	25191625	25191625	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ttggcaggtatttattatttCactgataggagacatcaagt	9	5	2	2	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	DOCK5-71	NM_024940	exon21	c.C2105T	p.S702L	TTATTTCACTGAT	.	60	47	84	2	.	0	0	0	0	0	T	25191625	C	T	25191625	3	4	62	1	0	0	0	0	1	0	0	0	4701	838	29	3	2187	3	DOCK5	8	25191625	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	416269	25191625	121172397	670	12661										
DOCK5	80005	ucsc.edu;bcgsc.ca	37	chr8	25261192	25261192	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	cacttcctctgtggtttccaCctcttcaaactcgtctgaca	5	15	4	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	DOCK5-71	NM_024940	exon48	c.C5045T	p.T1682I	TTTCCACCTCTTC	.	164	138	202	3	.	28	0	28	0	0	T	25261192	C	T	25261192	3	4	62	1	0	0	0	0	1	0	0	0	4701	507	18	3	5235	3	DOCK5	8	25261192	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	69567	25261192	121102830	671	12662										
CDCA2	157313	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr8	25364499	25364499	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	aggatgacttcttaggagctGcagaaggaaaactgcaatgc	12	7	1	2	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CDCA2-90	NM_152562	exon15	c.G2317A	p.A773T	GGAGCTGCAGAAG	.	43	38	50	0	.	6	0	6	0	0	A	25364499	G	A	25364499	3	1	62	1	0	0	0	0	1	0	0	0	3092	1319	46	3	2371	3	CDCA2	8	25364499	Missense_Mutation	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	103307	25364499	120999523	672	12663										
KIF13B	23303	broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr8	28929234	28929234	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gttttgtgggcgcccacggtGacgaactcgccctctcggag	14	13	1	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	KIF13B-22	NM_015254	exon39	c.C5121T	p.V1707V	CACGGTGACGAAC	.	107	87	93	1	.	0	0	0	0	0	A	28929234	G	A	28929234	2	1	62	1	0	0	0	0	0	0	0	1	8296	1277	45	3		3	KIF13B	8	28929234	Silent	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	3564735	28929234	117434788	673	12664										
NRG1	3084	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr8	32620757	32620757	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	cataaccttatagctgagctAaggagaaacaaggcacacag	9	9	0	2	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	NRG1-525	NM_013960	exon12	c.A1290T	p.L430L	TGAGCTAAGGAGA	.	106	79	150	0	.	0	0	0	0	0	T	32620757	A	T	32620757	2	4	62	1	0	0	0	0	0	0	0	1	10676	349	13	5		5	NRG1	8	32620757	Silent	SNP	A	TCGA-PK-A5HB-01A-11D-A29I-10	3691523	32620757	113743265	674	12665										
GOT1L1	137362	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr8	37792696	37792696	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	cttcactttttccttggttaGcatgatgttctctacaactt	5	10	2	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	GOT1L1-23	NM_152413	exon8	c.C967T	p.L323L	TGGTTAGCATGAT	.	62	49	119	1	.	0	0	0	0	0	A	37792696	G	A	37792696	2	1	62	1	0	0	0	0	0	0	0	1	6600	962	34	3		3	GOT1L1	8	37792696	Silent	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	5171939	37792696	108571326	675	12666										
STAR	6770	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr8	38003893	38003893	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gagcctctccatgggctggtCcaccacgacctccagccgga	11	17	1	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	STAR-91	NM_000349	exon4	c.G379T	p.D127Y	GCTGGTCCACCAC	.	48	36	73	0	.	4774	11	4753	4	6	A	38003893	C	A	38003893	3	1	62	1	0	0	0	0	1	0	0	0	15291	855	30	3	494	3	STAR	8	38003893	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	211197	38003893	108360129	676	12667										
ANK1	286	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr8	41566384	41566384	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gggcggccaggtgaaggggcGtcacaccttgcaccgactcg	16	13	1	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ANK1-716	NM_001142446	exon17	c.C2009T	p.T670M	AGGGGCGTCACAC	.	65	47	93	0	.	1	0	1	0	0	A	41566384	G	A	41566384	3	1	62	1	0	0	0	0	1	0	0	0	620	1145	40	1	4193	1	ANK1	8	41566384	Missense_Mutation	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	3562491	41566384	104797638	677	12668										
PRKDC	5591	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	48689404	48689404	+	Splice_Site	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ttccacatataaaaatcttaCcaagtaatgactgctggatt	5	8	1	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PRKDC-1515	NM_001081640	exon85	c.12088+1G>A	.	ATCTTACCAAGTA	.	31	21	58	0	.	1	0	1	0	0	T	48689404	C	T	48689404	5	4	62	1	0	0	0	0	0	0	1	0	12553	521	18	3	211	3	PRKDC	8	48689404	Splice_Site	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	7123020	48689404	97674618	678	12669										
ST18	9705	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr8	53044610	53044610	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	tcttgtttgttcagtttccaGgagagggaggctccattgag	13	7	2	2	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ST18-95	NM_014682	exon22	c.C2574T	p.S858S	TTTCCAGGAGAGG	.	121	90	217	0	.	0	0	0	0	0	A	53044610	G	A	53044610	2	1	62	1	0	0	0	0	0	0	0	1	15249	987	35	3		3	ST18	8	53044610	Silent	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	4355206	53044610	93319412	679	12670										
RP1	6101	bcgsc.ca	37	chr8	55533938	55533938	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gggccattagcgcgcactcaCcgccccaccccgtagccgtc	10	20	1	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	RP1-102	NM_006269	exon2	c.C412T	p.P138S	CACTCACCGCCCC	.	39	35	20	1	.	0	0	0	0	0	T	55533938	C	T	55533938	3	4	62	1	0	0	0	0	1	0	0	0	13567	507	18	3	414	3	RP1	8	55533938	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	2489328	55533938	90830084	680	12671										
IMPAD1	54928	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr8	57905818	57905818	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ttgcggttggacagcacgtcGccgctggtcatcttgtcctc	12	13	2	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	IMPAD1-91	NM_017813	exon1	c.C327T	p.G109G	CACGTCGCCGCTG	.	29	21	36	0	.	32	2	30	0	0	A	57905818	G	A	57905818	2	1	62	1	0	0	0	0	0	0	0	1	7746	1074	38	1		1	IMPAD1	8	57905818	Silent	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	2371880	57905818	88458204	681	12672										
SGK3	23678	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr8	67755735	67755735	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	agccctatgacaatactgtaGattggtggtgccttggggct	13	8	0	2	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SGK3-1003	NM_001033578	exon14	c.G1027A	p.D343N	ACTGTAGATTGGT	.	78	60	97	0	.	7	0	7	0	0	A	67755735	G	A	67755735	3	1	62	1	0	0	0	0	1	0	0	0	14247	942	33	3	1077	3	SGK3	8	67755735	Missense_Mutation	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	9849917	67755735	78608287	682	12673										
PRDM14	63978	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr8	70981595	70981595	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ggtgagcaaggtaataactgGgaggtcctcagcccctcagg	14	10	2	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PRDM14-93	NM_024504	exon2	c.C501T	p.S167S	TAACTGGGAGGTC	.	140	114	194	0	.	0	0	0	0	0	A	70981595	G	A	70981595	2	1	62	1	0	0	0	0	0	0	0	1	12487	1219	43	3		3	PRDM14	8	70981595	Silent	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	3225860	70981595	75382427	683	12674										
NCOA2	10499	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	71057034	71057034	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gtgatgtcaagtggtaaattCtggtttggcaataacctgcc	11	7	2	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	NCOA2-639	NM_006540	exon13	c.G2655A	p.Q885Q	TAAATTCTGGTTT	.	116	91	212	1	.	9	1	8	0	0	T	71057034	C	T	71057034	2	4	62	1	0	0	0	0	0	0	0	1	10258	912	32	3		3	NCOA2	8	71057034	Silent	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	75439	71057034	75306988	684	12675										
TRPA1	8989	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr8	72977700	72977700	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	acaaaccaaaatctgcaatgCttcgctattatttgtggtgc	7	9	1	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TRPA1-230	NM_007332	exon4	c.G538A	p.A180T	GCAATGCTTCGCT	.	98	84	164	0	.	0	0	0	0	0	T	72977700	C	T	72977700	3	4	62	1	0	0	0	0	1	0	0	0	16615	797	28	3	2917	3	TRPA1	8	72977700	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	1920666	72977700	73386322	685	12676										
KCNB2	9312	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr8	73848647	73848647	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	taatgatattttccagcctgGtattttttgctgagaaggat	9	5	0	2	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	KCNB2-158	NM_004770	exon3	c.G1057A	p.V353I	AGCCTGGTATTTT	.	96	68	135	0	.	0	0	0	0	0	A	73848647	G	A	73848647	3	1	62	1	0	0	0	0	1	0	0	0	8034	1261	44	3	1063	3	KCNB2	8	73848647	Missense_Mutation	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	870947	73848647	72515375	686	12677										
WWP1	11059	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr8	87443898	87443898	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gaaattagatatactcgtgaAggtgtaaggtactttgttga	11	3	0	3	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	WWP1-659	NM_007013	exon14	c.A1527C	p.E509D	TCGTGAAGGTGTA	.	141	112	250	0	.	18	1	17	0	0	C	87443898	A	C	87443898	3	2	62	1	0	0	0	0	1	0	0	0	17453	69	3	5	1573	5	WWP1	8	87443898	Missense_Mutation	SNP	A	TCGA-PK-A5HB-01A-11D-A29I-10	13595251	87443898	58920124	687	12678										
DCAF4L2	138009	broad.mit.edu;bcgsc.ca	37	chr8	88885852	88885852	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gggacgtagagggttttgtgCgggtatacccggagctcagg	18	7	1	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	DCAF4L2-91	NM_152418	exon1	c.G348A	p.P116P	TTTGTGCGGGTAT	.	93	9	124	1	.	0	0	0	0	0	T	88885852	C	T	88885852	2	4	62	1	0	0	0	0	0	0	0	1	4278	755	27	1		1	DCAF4L2	8	88885852	Silent	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	1441954	88885852	57478170	688	12679										
OSGIN2	734	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr8	90937358	90937358	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	tctgtagactcaaatcttttAtctgattataccagctttcc	4	10	4	2	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	OSGIN2-68	NM_001126111	exon6	c.A1248G	p.L416L	TCTTTTATCTGAT	.	41	30	78	0	.	9	2	7	0	0	G	90937358	A	G	90937358	2	3	62	1	0	0	0	0	0	0	0	1	11319	446	16	4		4	OSGIN2	8	90937358	Silent	SNP	A	TCGA-PK-A5HB-01A-11D-A29I-10	2051506	90937358	55426664	689	12680										
RUNX1T1	862	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr8	93023263	93023263	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	atgacaaaaggtctcagtggGaagttagtagcttcttgcag	12	6	2	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	RUNX1T1-1196	NM_001198679	exon5	c.C702T	p.F234F	CAGTGGGAAGTTA	.	62	42	120	0	.	0	0	0	0	0	A	93023263	G	A	93023263	2	1	62	1	0	0	0	0	0	0	0	1	13782	1165	41	3		3	RUNX1T1	8	93023263	Silent	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	2085905	93023263	53340759	690	12681										
RUNX1T1	862	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr8	93029539	93029539	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ggaggagtcagcctagattgCgtcttcacatccacaggtga	12	10	3	2	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	RUNX1T1-1196	NM_001198679	exon3	c.G318A	p.T106T	AGATTGCGTCTTC	.	107	79	143	1	.	0	0	0	0	0	T	93029539	C	T	93029539	2	4	62	1	0	0	0	0	0	0	0	1	13782	755	27	1		1	RUNX1T1	8	93029539	Silent	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	6276	93029539	53334483	691	12682										
RNF19A	25897	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr8	101299882	101299882	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	cagtacattctgggcaactaAtattaactctgctttcagag	7	9	3	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	RNF19A-229	NM_015435	exon3	c.T521C	p.I174T	CAACTAATATTAA	.	50	42	61	0	.	9	1	8	0	0	G	101299882	A	G	101299882	3	3	62	1	0	0	0	0	1	0	0	0	13505	101	4	4	2031	4	RNF19A	8	101299882	Missense_Mutation	SNP	A	TCGA-PK-A5HB-01A-11D-A29I-10	8270343	101299882	45064140	692	12683										
PKHD1L1	93035	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr8	110457219	110457219	+	Nonsense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	aaagttctatcagtgaattaTacggccattgaatgtgaaac	8	6	2	3	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PKHD1L1-145	NM_177531	exon38	c.T5121A	p.Y1707X	GAATTATACGGCC	.	80	56	141	1	.	0	0	0	0	0	A	110457219	T	A	110457219	4	1	62	1	0	0	0	0	0	1	0	0	12001	1413	49	5	5271	5	PKHD1L1	8	110457219	Nonsense_Mutation	SNP	T	TCGA-PK-A5HB-01A-11D-A29I-10	9157337	110457219	35906803	693	12684										
CSMD3	114788	ucsc.edu	37	chr8	113418864	113418864	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	tggattacaatcaaaaagaaCcgatgaaccgactgcaaatt	7	8	1	2	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CSMD3-1132	NM_198123	exon35	c.G5698C	p.V1900L	AAAGAACCGATGA	.	42	4	81	0	.	0	0	0	0	0	G	113418864	C	G	113418864	3	3	62	1	0	0	0	0	1	0	0	0	3952	507	18	3	5573	3	CSMD3	8	113418864	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	2961645	113418864	32945158	694	12685										
CSMD3	114788	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr8	114110996	114110996	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	tttacttaccatatggtaggTggctcagaaccttctatttc	7	9	2	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CSMD3-1132	NM_052900	exon5	c.A906T	p.P302P	GGTAGGTGGCTCA	.	60	49	63	0	.	0	0	0	0	0	A	114110996	T	A	114110996	2	1	62	1	0	0	0	0	0	0	0	1	3952	1683	59	5		5	CSMD3	8	114110996	Silent	SNP	T	TCGA-PK-A5HB-01A-11D-A29I-10	692132	114110996	32253026	695	12686										
KIAA0196	9897	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr8	126067843	126067843	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	aaactgttaccttgatgatgCcaaccaaagtcgttttcatc	6	10	1	2	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	KIAA0196-92	NM_014846	exon17	c.G2087T	p.G696V	ATGATGCCAACCA	.	47	37	99	0	.	0	0	0	0	0	A	126067843	C	A	126067843	3	1	62	1	0	0	0	0	1	0	0	0	8182	739	26	3	1444	3	KIAA0196	8	126067843	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	11956847	126067843	20296179	696	12687										
TG	7038	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr8	133900673	133900673	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	cttctggcagatcttaaatgGccaactcagccaatacccgg	8	13	3	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TG-145	NM_003235	exon10	c.G2621A	p.G874D	TAAATGGCCAACT	.	100	80	128	0	.	1	0	1	0	0	A	133900673	G	A	133900673	3	1	62	1	0	0	0	0	1	0	0	0	15850	1203	42	3	2659	3	TG	8	133900673	Missense_Mutation	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	7832830	133900673	12463349	697	12688										
SLA	6503	broad.mit.edu;bcgsc.ca	37	chr8	134060153	134060153	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	cagcagctcctcggccttgtCtctgcccaggccctcaaaca	8	18	2	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SLA-279	NM_006748	exon4	c.G394C	p.D132H	CCTTGTCTCTGCC	.	57	45	75	2	.	2	2	0	0	0	G	134060153	C	G	134060153	3	3	62	1	0	0	0	0	1	0	0	0	14398	913	32	3	572	3	SLA	8	134060153	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	159480	134060153	12303869	698	12689										
TG	7038	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr8	134146920	134146920	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	tccttgcccctctgtttcagAtggagccaagggcgggcagt	13	12	2	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TG-145	NM_003235	exon48	c.A8189G	p.D2730G	TTTCAGATGGAGC	.	46	31	69	0	.	0	0	0	0	0	G	134146920	A	G	134146920	3	3	62	1	0	0	0	0	1	0	0	0	15850	347	12	4	8379	4	TG	8	134146920	Missense_Mutation	SNP	A	TCGA-PK-A5HB-01A-11D-A29I-10	86767	134146920	12217102	699	12690										
ZFAT	57623	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr8	135621018	135621018	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	aggtgtctgctgaatggcgtAttcctggtagcctctccgag	13	10	2	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ZFAT-90	NM_020863	exon5	c.T739C	p.Y247H	TGGCGTATTCCTG	.	119	99	129	0	.	3	0	3	0	0	G	135621018	A	G	135621018	3	3	62	1	0	0	0	0	1	0	0	0	17669	449	16	4	3040	4	ZFAT	8	135621018	Missense_Mutation	SNP	A	TCGA-PK-A5HB-01A-11D-A29I-10	1474098	135621018	10743004	700	12691										
PTK2	5747	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr8	141749130	141749130	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	tactcaccaaacatccatacGtcactagctgaggtaaaacg	6	12	2	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PTK2-1517	NM_005607	exon21	c.C1878T	p.D626D	CCATACGTCACTA	.	30	20	36	0	.	61	7	54	0	0	A	141749130	G	A	141749130	2	1	62	1	0	0	0	0	0	0	0	1	12795	1136	40	1		1	PTK2	8	141749130	Silent	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	6128112	141749130	4614892	701	12692										
KIFC2	90990	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	chr8	145697998	145697998	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	agcaaccgggccaccgccgcCaccgccatgaaccagcgcag	11	19	0	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	KIFC2-92	NM_145754	exon16	c.C1770T	p.A590A	CGCCGCCACCGCC	.	29	17	12	0	.	6	0	6	0	0	T	145697998	C	T	145697998	2	4	62	1	0	0	0	0	0	0	0	1	8334	581	21	3		3	KIFC2	8	145697998	Silent	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	3948868	145697998	666024	702	12693										
FOXH1	8928	broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr8	145699949	145699949	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gtcccccaggaactgcggtgCcctgcagtaagtggagaggc	15	12	0	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	FOXH1-226	NM_003923	exon3	c.G770A	p.G257D	GCGGTGCCCTGCA	.	37	32	64	1	.	0	0	0	0	0	T	145699949	C	T	145699949	3	4	62	1	0	0	0	0	1	0	0	0	6027	739	26	3	331	3	FOXH1	8	145699949	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	1951	145699949	664073	703	12694										
ZNF517	340385	broad.mit.edu;bcgsc.ca	37	chr8	146032798	146032798	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	cccaagggttctgcaggaagAcctgggccggcctgtgggga	17	11	1	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ZNF517-90	NM_213605	exon5	c.A497G	p.D166G	AGGAAGACCTGGG	.	46	33	75	2	.	1	0	1	0	0	G	146032798	A	G	146032798	3	3	62	1	0	0	0	0	1	0	0	0	17998	275	10	4	511	4	ZNF517	8	146032798	Missense_Mutation	SNP	A	TCGA-PK-A5HB-01A-11D-A29I-10	332849	146032798	331224	704	12695										
ZNF517	340385	hgsc.bcm.edu	37	chr8	146033347	146033347	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gggtgcccaggacggcggcgTggggcagggcgccctgctcg	21	13	0	0	rs2976653		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ZNF517-90	NM_213605	exon5	c.T1046C	p.V349A	GCGGCGTGGGGCA	.	8	8	0	0	G|0.992;C|0.006	0	0	0	0	0	C	146033347	T	C	146033347	3	2	62	1	0	0	0	0	1	0	0	0	17998	1696	59	4	1060	4	ZNF517	8	146033347	Missense_Mutation	SNP	T	TCGA-PK-A5HB-01A-11D-A29I-10	549	146033347	330675	705	12696										
KDM4C	23081	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr9	7049096	7049096	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gtctcctttcctgtaggtggGcccatgtcatgtgcgccgtt	12	12	2	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	KDM4C-228	NM_001146696	exon17	c.G2386C	p.A796P	AGGTGGGCCCATG	.	69	22	90	0	.	0	0	0	0	0	C	7049096	G	C	7049096	3	2	62	1	0	0	0	0	1	0	0	0	8151	1203	42	3	2452	3	KDM4C	9	7049096	Missense_Mutation	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10		7049096	134164335	706	12697										
KDM4C	23081	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr9	7049109	7049109	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	taggtgggcccatgtcatgtGcgccgttgcggtcccagaag	15	11	1	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	KDM4C-228	NM_001146696	exon17	c.G2399T	p.C800F	TCATGTGCGCCGT	.	84	31	102	0	.	13	13	0	0	0	T	7049109	G	T	7049109	3	4	62	1	0	0	0	0	1	0	0	0	8151	1319	46	3	2465	3	KDM4C	9	7049109	Missense_Mutation	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	13	7049109	134164322	707	12698										
FREM1	158326	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr9	14776240	14776240	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gcagccttcagcatggattcTtgtgtcaccatctactggaa	9	11	4	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	FREM1-138	NM_001177704	exon2	c.A12G	p.Q4Q	GGATTCTTGTGTC	.	146	63	120	0	.	0	0	0	0	0	C	14776240	T	C	14776240	2	2	62	1	0	0	0	0	0	0	0	1	6063	1606	56	4		4	FREM1	9	14776240	Silent	SNP	T	TCGA-PK-A5HB-01A-11D-A29I-10	7727131	14776240	126437191	708	12699										
BNC2	54796	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr9	16436339	16436339	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	cactgggctcatgggtggccAtcatcactgctggcactact	11	13	3	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	BNC2-92	NM_017637	exon6	c.T1853A	p.M618K	GTGGCCATCATCA	.	74	39	72	0	.	0	0	0	0	0	T	16436339	A	T	16436339	3	4	62	1	0	0	0	0	1	0	0	0	1476	217	8	5	1454	5	BNC2	9	16436339	Missense_Mutation	SNP	A	TCGA-PK-A5HB-01A-11D-A29I-10	1660099	16436339	124777092	709	12700										
SLC24A2	25769	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr9	19520911	19520911	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ccctacagtgatgtcaaaaaTgttgcttccaacagagctgg	9	10	1	2	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SLC24A2-517	NM_020344	exon9	c.A1717T	p.I573F	CAAAAATGTTGCT	.	193	89	157	0	.	0	0	0	0	0	A	19520911	T	A	19520911	3	1	62	1	0	0	0	0	1	0	0	0	14501	1464	51	5	276	5	SLC24A2	9	19520911	Missense_Mutation	SNP	T	TCGA-PK-A5HB-01A-11D-A29I-10	3084572	19520911	121692520	710	12701										
CDKN2A	1029	hgsc.bcm.edu	37	chr9	21971150	21971150	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ggcggggtcggcgcagttggGctccgcgccgtggagcagca	20	12	0	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CDKN2A-23992	NM_058195	exon2	c.C251A	p.A84D	AGTTGGGCTCCGC	.	36	12	9	0	.	36	18	18	0	0	T	21971150	G	T	21971150	3	4	62	1	0	0	0	0	1	0	0	0	3167	1203	42	3	270	3	CDKN2A	9	21971150	Missense_Mutation	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	2450239	21971150	119242281	711	12702										
TMEM215	401498	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	32784389	32784389	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ccgagggatgcaccaagtggCcagagaacgagctgctgtgg	16	10	0	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TMEM215-90	NM_212558	exon2	c.C208A	p.P70T	AAGTGGCCAGAGA	.	150	71	141	1	.	0	0	0	0	0	A	32784389	C	A	32784389	3	1	62	1	0	0	0	0	1	0	0	0	16175	739	26	3	210	3	TMEM215	9	32784389	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	10813239	32784389	108429042	712	12703										
C9orf24	84688	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	34381072	34381072	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	acccgcatcggggcgtgatcCgcggcagctgctggttccgc	15	15	0	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	C9orf24-91	NM_032596	exon5	c.G530A	p.R177Q	GTGATCCGCGGCA	.	138	73	56	1	.	1	1	0	0	0	T	34381072	C	T	34381072	3	4	62	1	0	0	0	0	1	0	0	0	2481	652	23	1	376	1	C9orf24	9	34381072	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	1596683	34381072	106832359	713	12704										
DNAJB5	25822	ucsc.edu;bcgsc.ca	37	chr9	34993362	34993362	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gaacccaacgctgaggagaaGtttaaggagattgcagaggc	14	7	0	4	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	DNAJB5-226	NM_001135004	exon3	c.G474A	p.K158K	GGAGAAGTTTAAG	.	209	71	167	3	.	22	14	8	0	0	A	34993362	G	A	34993362	2	1	62	1	0	0	0	0	0	0	0	1	4634	1020	36	3		3	DNAJB5	9	34993362	Silent	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	612290	34993362	106220069	714	12705										
C9orf131	138724	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr9	35043650	35043650	+	Frame_Shift_Del	DEL	C	C	-													0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	cttttgagcctccgatgccaCccccctgccaatccccagct					novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	C9orf131-90	NM_203299	exon2	c.1024delC	p.P342fs	ATGCCACCCCCCT	.	85	32	51	0	.	0	0	0	0	0	-	35043650	C	-	35043650	7	5	62	1	0	1	0	1	0	0	0	0	2463	507	18	0	1046	0	C9orf131	9	35043650	Frame_Shift_Del	DEL	C	TCGA-PK-A5HB-01A-11D-A29I-10	50288	35043650	106169781	715	12706										
C9orf131	138724	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr9	35044520	35044520	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ctattgtaggggaaatggagCaaaaagaaaactgtgttcct	11	5	0	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	C9orf131-90	NM_203299	exon2	c.C1894A	p.Q632K	ATGGAGCAAAAAG	.	91	33	63	1	.	0	0	0	0	0	A	35044520	C	A	35044520	3	1	62	1	0	0	0	0	1	0	0	0	2463	711	25	3	1916	3	C9orf131	9	35044520	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	870	35044520	106168911	716	12707										
TLN1	7094	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr9	35720206	35720206	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ccggttgtattgctgctgcaGgactgttgacctgtagaggg	15	8	0	2	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TLN1-609	NM_006289	exon13	c.C1294T	p.L432L	GCTGCAGGACTGT	.	142	33	93	0	.	0	0	0	0	0	A	35720206	G	A	35720206	2	1	62	1	0	0	0	0	0	0	0	1	15984	991	35	3		3	TLN1	9	35720206	Silent	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	675686	35720206	105493225	717	12708										
CREB3	10488	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	35735312	35735312	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	atttcccccagggtcttgaaAtacacagcccagaatatgga	8	11	1	2	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CREB3-90	NM_006368	exon6	c.A552G	p.K184K	CTTGAAATACACA	.	177	57	114	1	.	0	0	0	0	0	G	35735312	A	G	35735312	2	3	62	1	0	0	0	0	0	0	0	1	3861	98	4	4		4	CREB3	9	35735312	Silent	SNP	A	TCGA-PK-A5HB-01A-11D-A29I-10	15106	35735312	105478119	718	12709										
CCIN	881	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr9	36170340	36170340	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	aaggggccctgcttgattccGtggtcatcctcggtggccag	14	12	1	1	rs150485511		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CCIN-92	NM_005893	exon1	c.G841A	p.V281M	GATTCCGTGGTCA	.	111	49	81	0	G|1.000;A|0.000	0	0	0	0	0	A	36170340	G	A	36170340	3	1	62	1	0	0	0	0	1	0	0	0	2884	1145	40	1	843	1	CCIN	9	36170340	Missense_Mutation	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	435028	36170340	105043091	719	12710										
CCIN	881	ucsc.edu;bcgsc.ca	37	chr9	36170696	36170696	+	Silent	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	atctatcgctatgatgagcgGaaggaagtctggtgcctggc	14	8	2	2	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CCIN-92	NM_005893	exon1	c.G1197C	p.R399R	TGAGCGGAAGGAA	.	225	96	194	2	.	1	0	1	0	0	C	36170696	G	C	36170696	2	2	62	1	0	0	0	0	0	0	0	1	2884	1161	41	3		3	CCIN	9	36170696	Silent	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	356	36170696	105042735	720	12711										
FRMPD1	22844	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr9	37744759	37744759	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ctgctggctcctctgagggaGaccaagagcacaaacccagc	11	14	1	3	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	FRMPD1-159	NM_014907	exon16	c.G2730A	p.E910E	GAGGGAGACCAAG	.	88	43	86	2	.	0	0	0	0	0	A	37744759	G	A	37744759	2	1	62	1	0	0	0	0	0	0	0	1	6076	933	33	3		3	FRMPD1	9	37744759	Silent	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	1574063	37744759	103468672	721	12712										
FRMPD1	22844	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr9	37745283	37745283	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	tagagatgagcctagaagtgAtgaatgtggaataaatccag	12	4	0	5	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	FRMPD1-159	NM_014907	exon16	c.A3254G	p.D1085G	GAAGTGATGAATG	.	91	32	72	0	.	0	0	0	0	0	G	37745283	A	G	37745283	3	3	62	1	0	0	0	0	1	0	0	0	6076	333	12	4	3312	4	FRMPD1	9	37745283	Missense_Mutation	SNP	A	TCGA-PK-A5HB-01A-11D-A29I-10	524	37745283	103468148	722	12713										
CNTNAP3	79937	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr9	39109179	39109179	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	tctccgcggcagagcagtggCcccagtgtataagctgcttc	12	13	1	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CNTNAP3-91	NM_033655	exon15	c.G2343A	p.G781G	CAGTGGCCCCAGT	.	456	202	389	0	.	3	0	3	0	0	T	39109179	C	T	39109179	2	4	62	1	0	0	0	0	0	0	0	1	3654	726	26	3		3	CNTNAP3	9	39109179	Silent	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	1363896	39109179	102104252	723	12714										
PRKACG	5568	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr9	71628334	71628334	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	atctcatagatgagcaccccTagggcccaccagtccacggc	9	16	1	2	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PRKACG-1061	NM_002732	exon1	c.A675G	p.L225L	CACCCCTAGGGCC	.	105	47	69	0	.	0	0	0	0	0	C	71628334	T	C	71628334	2	2	62	1	0	0	0	0	0	0	0	1	12531	1509	53	4		4	PRKACG	9	71628334	Silent	SNP	T	TCGA-PK-A5HB-01A-11D-A29I-10	32519155	71628334	69585097	724	12715										
TJP2	9414	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr9	71831374	71831374	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ggtgggcctgctgatgggctGctccagtgagtgtcctccct	15	12	0	2	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TJP2-115	NM_001170416	exon3	c.G327A	p.L109L	TGGGCTGCTCCAG	.	49	22	47	1	.	0	0	0	0	0	A	71831374	G	A	71831374	2	1	62	1	0	0	0	0	0	0	0	1	15967	1306	46	3		3	TJP2	9	71831374	Silent	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	203040	71831374	69382057	725	12716										
APBA1	320	hgsc.bcm.edu	37	chr9	72131953	72131953	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ccgagctgggcgcggaggtcCtcgagggctcgcccgcgctg	18	15	0	0	rs149995729		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	APBA1-91	NM_001163	exon2	c.G174A	p.E58E	GAGGTCCTCGAGG	.	38	21	0	0	C|0.995;T|0.005	0	0	0	0	0	T	72131953	C	T	72131953	2	4	62	1	0	0	0	0	0	0	0	1	756	680	24	3		3	APBA1	9	72131953	Silent	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	300579	72131953	69081478	726	12717										
PRUNE2	158471	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr9	79325100	79325100	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gaaatacagaatctgaggctCtcctatcaatggagcttggc	10	9	3	2	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PRUNE2-157	NM_015225	exon8	c.G2090A	p.R697K	GAGGCTCTCCTAT	.	64	29	47	0	.	0	0	0	0	0	T	79325100	C	T	79325100	3	4	62	1	0	0	0	0	1	0	0	0	12673	913	32	3	7224	3	PRUNE2	9	79325100	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	7193147	79325100	61888331	727	12718										
TLE4	7091	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr9	82267520	82267520	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	cacagcagcaacaactccagGcccagcatttatcacatgga	7	14	1	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TLE4-524	NM_007005	exon7	c.G403A	p.A135T	CTCCAGGCCCAGC	.	116	53	112	0	.	2	2	0	0	0	A	82267520	G	A	82267520	3	1	62	1	0	0	0	0	1	0	0	0	15978	1203	42	3	429	3	TLE4	9	82267520	Missense_Mutation	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	2942420	82267520	58945911	728	12719										
TLE4	7091	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr9	82267635	82267635	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	tgccgggcttctggccctctCcagtgctctaggaggtcagt	13	13	4	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TLE4-524	NM_007005	exon7	c.C518T	p.S173F	CCCTCTCCAGTGC	.	96	43	74	0	.	18	9	9	0	0	T	82267635	C	T	82267635	3	4	62	1	0	0	0	0	1	0	0	0	15978	855	30	3	544	3	TLE4	9	82267635	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	115	82267635	58945796	729	12720										
FRMD3	257019	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr9	85926825	85926825	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	tttatcaaatggattctcttAtttccctgaaagaccacaaa	4	9	2	2	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	FRMD3-91	NM_174938	exon8	c.T750A	p.N250K	TCTCTTATTTCCC	.	35	15	30	0	.	4	4	0	0	0	T	85926825	A	T	85926825	3	4	62	1	0	0	0	0	1	0	0	0	6069	446	16	5	1071	5	FRMD3	9	85926825	Missense_Mutation	SNP	A	TCGA-PK-A5HB-01A-11D-A29I-10	3659190	85926825	55286606	730	12721										
KIF27	55582	bcgsc.ca	37	chr9	86504166	86504166	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	tacataggcggacttgtgtgGaccttgcaagtgattccccc	11	11	0	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	KIF27-523	NM_017576	exon7	c.C1812T	p.V604V	TGTGTGGACCTTG	.	134	63	138	3	.	4	4	0	0	0	A	86504166	G	A	86504166	2	1	62	1	0	0	0	0	0	0	0	1	8317	1161	41	3		3	KIF27	9	86504166	Silent	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	577341	86504166	54709265	731	12722										
AGTPBP1	23287	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr9	88248284	88248284	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ggttctttggagattaaatcAtagtcctttgaaaataaaaa	7	4	2	2	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	AGTPBP1-158	NM_015239	exon14	c.T1188C	p.Y396Y	TAAATCATAGTCC	.	29	19	36	0	.	0	0	0	0	0	G	88248284	A	G	88248284	2	3	62	1	0	0	0	0	0	0	0	1	400	224	8	4		4	AGTPBP1	9	88248284	Silent	SNP	A	TCGA-PK-A5HB-01A-11D-A29I-10	1744118	88248284	52965147	732	12723										
NAA35	60560	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr9	88576991	88576991	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	cgtgcctttacattcataatCcagactttatagaagatcct	5	10	1	3	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	NAA35-92	NM_024635	exon6	c.C412G	p.P138A	CATAATCCAGACT	.	78	39	91	0	.	10	6	4	0	0	G	88576991	C	G	88576991	3	3	62	1	0	0	0	0	1	0	0	0	10151	855	30	3	430	3	NAA35	9	88576991	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	328707	88576991	52636440	733	12724										
NFIL3	4783	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr9	94171973	94171973	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ataggtgaggaaagtttttgCgtggcctcaaattcattatc	10	6	2	1	rs141662610		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	NFIL3-90	NM_005384	exon2	c.G1044A	p.T348T	TTTTTGCGTGGCC	.	85	31	75	1	C|1.000;T|0.000	75	42	33	0	0	T	94171973	C	T	94171973	2	4	62	1	0	0	0	0	0	0	0	1	10402	755	27	1		1	NFIL3	9	94171973	Silent	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	5594982	94171973	47041458	734	12725										
WNK2	65268	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr9	96051773	96051773	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gggacccctgtggaggtgggCgacagagacttcaccctgga	16	11	1	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	WNK2-765	NM_006648	exon19	c.C4737T	p.G1579G	GGTGGGCGACAGA	.	86	37	44	0	.	0	0	0	0	0	T	96051773	C	T	96051773	2	4	62	1	0	0	0	0	0	0	0	1	17416	755	27	1		1	WNK2	9	96051773	Silent	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	1879800	96051773	45161658	735	12726										
C9orf129	445577	bcgsc.ca	37	chr9	96097703	96097703	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ttgtcggaagatgacgatgtAgaagagccagggaagtaggc	16	5	0	4	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	C9orf129-23	NM_001098808	exon3	c.T318C	p.S106S	CGATGTAGAAGAG	.	919	345	694	3	.	122	121	1	0	0	G	96097703	A	G	96097703	2	3	62	1	0	0	0	0	0	0	0	1	2462	407	15	4		4	C9orf129	9	96097703	Silent	SNP	A	TCGA-PK-A5HB-01A-11D-A29I-10	45930	96097703	45115728	736	12727										
FAM120A	23196	bcgsc.ca	37	chr9	96326794	96326794	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ccgcagagaagctgctctggAggcagctgtcttaaataaag	12	9	2	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	FAM120A-90	NM_014612	exon18	c.A3329G	p.E1110G	CTCTGGAGGCAGC	.	105	44	103	3	.	136	63	73	0	0	G	96326794	A	G	96326794	3	3	62	1	0	0	0	0	1	0	0	0	5431	304	11	4	3399	4	FAM120A	9	96326794	Missense_Mutation	SNP	A	TCGA-PK-A5HB-01A-11D-A29I-10	229091	96326794	44886637	737	12728										
PTCH1	5727	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr9	98244481	98244481	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	acacaaatgttccaatttccActgcctaataaaatgaaaag	4	9	0	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PTCH1-3532	NM_000264	exon4	c.T589C	p.W197R	ATTTCCACTGCCT	.	50	20	39	0	.	0	0	0	0	0	G	98244481	A	G	98244481	3	3	62	1	0	0	0	0	1	0	0	0	12762	159	6	4	3834	4	PTCH1	9	98244481	Missense_Mutation	SNP	A	TCGA-PK-A5HB-01A-11D-A29I-10	1917687	98244481	42968950	738	12729										
ZNF367	195828	hgsc.bcm.edu;mdanderson.org	37	chr9	99180071	99180071	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ccccgcggccccagggctgaGcgtcacgttgtgtgcgttct	14	15	2	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ZNF367-90	NM_153695	exon1	c.C244T	p.L82F	GGCTGAGCGTCAC	.	32	11	9	0	.	2	2	0	0	0	A	99180071	G	A	99180071	3	1	62	1	0	0	0	0	1	0	0	0	17908	971	34	3	828	3	ZNF367	9	99180071	Missense_Mutation	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	935590	99180071	42033360	739	12730										
OR13C8	138802	broad.mit.edu	37	chr9	107331903	107331903	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	agctgggtcctgggtcactgGgcttgtggactcagtagtgc	16	9	2	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	OR13C8-70	NM_001004483	exon1	c.G455T	p.G152V	TCACTGGGCTTGT	.	74	3	73	0	.	0	0	0	0	0	T	107331903	G	T	107331903	3	4	62	1	0	0	0	0	1	0	0	0	10967	1232	43	3	457	3	OR13C8	9	107331903	Missense_Mutation	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	8151832	107331903	33881528	740	12731										
SLC44A1	23446	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr9	108126992	108126992	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	aggagctgtggtaacatactAttttactaggtaagaatatg	10	4	0	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SLC44A1-94	NM_080546	exon10	c.A1244G	p.Y415C	CATACTATTTTAC	.	163	66	130	0	.	0	0	0	0	0	G	108126992	A	G	108126992	3	3	62	1	0	0	0	0	1	0	0	0	14670	449	16	4	1282	4	SLC44A1	9	108126992	Missense_Mutation	SNP	A	TCGA-PK-A5HB-01A-11D-A29I-10	795089	108126992	33086439	741	12732										
SVEP1	79987	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr9	113192665	113192665	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	aaatgtgacttcggcacctaCtgtataaatctcacctgagg	8	10	1	2	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SVEP1-75	NM_153366	exon33	c.G5419C	p.V1807L	CACCTACTGTATA	.	134	62	122	0	.	0	0	0	0	0	G	113192665	C	G	113192665	3	3	62	1	0	0	0	0	1	0	0	0	15457	565	20	3	5360	3	SVEP1	9	113192665	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	5065673	113192665	28020766	742	12733										
KIAA0368	23392	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr9	114148674	114148674	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	tacctggattctcgaactcgCcacatattgcttgtaaggtt	8	10	1	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	KIAA0368-68	NM_001080398	exon33	c.G4044A	p.W1348X	AACTCGCCACATA	.	114	45	107	0	.	29	26	3	0	0	T	114148674	C	T	114148674	4	4	62	1	0	0	0	0	0	1	0	0	8192	740	26	3	2085	3	KIAA0368	9	114148674	Nonsense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	956009	114148674	27064757	743	12734										
RGS3	5998	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr9	116269609	116269609	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ctactcgtgtggcgcatggtCccccaggtcaagccaggacc	12	15	1	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	RGS3-227	NM_144488	exon14	c.C1128T	p.V376V	CATGGTCCCCCAG	.	195	80	130	0	.	0	0	0	0	0	T	116269609	C	T	116269609	2	4	62	1	0	0	0	0	0	0	0	1	13341	842	30	3		3	RGS3	9	116269609	Silent	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	2120935	116269609	24943822	744	12735										
TNC	3371	ucsc.edu;bcgsc.ca;mdanderson.org	37	chr9	117803271	117803271	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ttcctcaaagcccttcatggCgatgatgctgacaaggtact	9	11	2	2	rs2274750	byfrequency	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TNC-517	NM_002160	exon19	c.G5341A	p.A1781T	TCATGGCGATGAT	.	266	117	171	0	C|0.937;T|0.063	288	143	145	0	0	T	117803271	C	T	117803271	3	4	62	1	0	0	0	0	1	0	0	0	16307	768	27	1	1304	1	TNC	9	117803271	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	1533662	117803271	23410160	745	12736										
ASTN2	23245	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr9	119488071	119488071	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	tttctgatactggagccacaGctgctgctggaccttcttgc	10	12	2	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ASTN2-161	NM_014010	exon15	c.C2632T	p.L878L	GCCACAGCTGCTG	.	122	53	120	0	.	4	0	4	0	0	A	119488071	G	A	119488071	2	1	62	1	0	0	0	0	0	0	0	1	1066	962	34	3		3	ASTN2	9	119488071	Silent	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	1684800	119488071	21725360	746	12737										
MEGF9	1955	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	123367687	123367687	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	atatatacagcccccacaaaTcccattagcagcaccacaac	3	16	0	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	.	NM_001080497	exon6	c.A1590T	p.G530G	CACAAATCCCATT	.	248	92	192	2	.	6	2	4	0	0	A	123367687	T	A	123367687	2	1	62	1	0	0	0	0	0	0	0	1	9492	1422	50	5		5	MEGF9	9	123367687	Silent	SNP	T	TCGA-PK-A5HB-01A-11D-A29I-10	3879616	123367687	17845744	747	12738										
GSN	2934	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr9	124064309	124064309	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gagcctggcctgcagatctgGcgtgtggagaagttcgatct	15	9	2	2	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	GSN-154	NM_000177	exon2	c.G213A	p.W71X	GATCTGGCGTGTG	.	300	137	227	0	.	157	153	4	0	0	A	124064309	G	A	124064309	4	1	62	1	0	0	0	0	0	1	0	0	6846	1212	42	3	247	3	GSN	9	124064309	Nonsense_Mutation	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	696622	124064309	17149122	748	12739										
OR1Q1	158131	broad.mit.edu	37	chr9	125377151	125377151	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	atttctggcaacttggccatCatcacactgattctctctgc	6	13	5	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	OR1Q1-69	NM_012364	exon1	c.C135T	p.I45I	GGCCATCATCACA	.	216	6	148	0	.	0	0	0	0	0	T	125377151	C	T	125377151	2	4	62	1	0	0	0	0	0	0	0	1	11000	816	29	3		3	OR1Q1	9	125377151	Silent	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	1312842	125377151	15836280	749	12740										
OR1B1	347169	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr9	125391061	125391061	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gtagaggaaaccaaccatggTgaggtgggatccacaggtgg	16	7	0	2	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	OR1B1-68	NM_001004450	exon1	c.A754T	p.T252S	CCATGGTGAGGTG	.	136	54	139	0	.	0	0	0	0	0	A	125391061	T	A	125391061	3	1	62	1	0	0	0	0	1	0	0	0	10980	1696	59	5	205	5	OR1B1	9	125391061	Missense_Mutation	SNP	T	TCGA-PK-A5HB-01A-11D-A29I-10	13910	125391061	15822370	750	12741										
ZBTB6	10773	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr9	125673275	125673275	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ttggcagtaaatgtcttcaaGcacacagtacactgaaaggg	10	8	2	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ZBTB6-90	NM_006626	exon2	c.C1077T	p.C359C	CTTCAAGCACACA	.	246	120	160	0	.	8	5	3	0	0	A	125673275	G	A	125673275	2	1	62	1	0	0	0	0	0	0	0	1	17589	963	34	3		3	ZBTB6	9	125673275	Silent	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	282214	125673275	15540156	751	12742										
CRB2	286204	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr9	126132455	126132455	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	tgcacggcggaacctgcagtGacactgtggcaggctatatc	13	11	0	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CRB2-91	NM_173689	exon7	c.G1123A	p.D375N	TGCAGTGACACTG	.	75	26	70	1	.	0	0	0	0	0	A	126132455	G	A	126132455	3	1	62	1	0	0	0	0	1	0	0	0	3855	1290	45	3	1149	3	CRB2	9	126132455	Missense_Mutation	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	459180	126132455	15080976	752	12743										
MAPKAP1	79109	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	128322005	128322005	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	agccaaacttatgaatgggcTcattggaatccagcgggggg	14	8	1	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	MAPKAP1-678	NM_001006618	exon6	c.A755T	p.E252V	ATGGGCTCATTGG	.	159	75	135	2	.	70	33	37	0	0	A	128322005	T	A	128322005	3	1	62	1	0	0	0	0	1	0	0	0	9316	1551	54	5	859	5	MAPKAP1	9	128322005	Missense_Mutation	SNP	T	TCGA-PK-A5HB-01A-11D-A29I-10	2189550	128322005	12891426	753	12744										
ZBTB34	403341	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr9	129642194	129642194	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gagatctctcctccatattgCtctcagggacggcagcccac	9	15	2	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ZBTB34-69	NM_001099270	exon2	c.C504T	p.C168C	ATATTGCTCTCAG	.	116	57	92	0	.	1	1	0	0	0	T	129642194	C	T	129642194	2	4	62	1	0	0	0	0	0	0	0	1	17574	805	28	3		3	ZBTB34	9	129642194	Silent	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	1320189	129642194	11571237	754	12745										
SPTAN1	6709	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr9	131346591	131346591	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	atggcatcaccattcaggccCgccagttccaagatgctggc	10	14	2	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SPTAN1-158	NM_003127	exon17	c.C2224T	p.R742C	CAGGCCCGCCAGT	.	87	27	75	0	.	34	18	16	0	0	T	131346591	C	T	131346591	3	4	62	1	0	0	0	0	1	0	0	0	15154	652	23	1	2286	1	SPTAN1	9	131346591	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	1704397	131346591	9866840	755	12746										
WDR34	89891	hgsc.bcm.edu	37	chr9	131418828	131418828	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ccgcgccctcaccgtctcccAgcggatgccctggacggccc	11	21	2	0	rs4837292		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	WDR34-92	NM_052844	exon1	c.T178G	p.W60G	TCTCCCAGCGGAT	.	7	7	0	0	A|0.006;C|0.994	0	0	0	0	0	C	131418828	A	C	131418828	3	2	62	1	0	0	0	0	1	0	0	0	17326	188	7	5	1468	5	WDR34	9	131418828	Missense_Mutation	SNP	A	TCGA-PK-A5HB-01A-11D-A29I-10	72237	131418828	9794603	756	12747										
PKN3	29941	broad.mit.edu;bcgsc.ca	37	chr9	131469666	131469666	+	Nonsense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	agccttcagggacacctgtgAagcccaccgccctaacaggt	10	15	1	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PKN3-521	NM_013355	exon6	c.A817T	p.K273X	CCTGTGAAGCCCA	.	56	24	39	1	.	2	2	0	0	0	T	131469666	A	T	131469666	4	4	62	1	0	0	0	0	0	1	0	0	12010	247	9	5	839	5	PKN3	9	131469666	Nonsense_Mutation	SNP	A	TCGA-PK-A5HB-01A-11D-A29I-10	50838	131469666	9743765	757	12748										
PKN3	29941	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr9	131480648	131480650	+	In_Frame_Del	DEL	AGA	AGA	-													0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ggggctgcagttcttacacgAgaagaagatcatttacaggt					novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	AGA	AGA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PKN3-521	NM_013355	exon17	c.2030_2032del	p.677_678del	TACACGAGAAGAA	.	108	30	83	0	.	0	0	0	0	0	-	131480650	AGA	-	131480648	7	5	62	1	0	1	0	1	0	0	0	0	12010	304	11	0	2096	0	PKN3	9	131480648	In_Frame_Del	DEL	AGA	TCGA-PK-A5HB-01A-11D-A29I-10	10982	131480648	9732783	758	12749										
PRDM12	59335	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr9	133556768	133556768	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	acgctggacaagcccttcgtGtgccgcttctgcaaccgccg	11	16	1	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PRDM12-90	NM_021619	exon5	c.G816A	p.V272V	CTTCGTGTGCCGC	.	150	30	72	0	.	0	0	0	0	0	A	133556768	G	A	133556768	2	1	62	1	0	0	0	0	0	0	0	1	12485	1364	48	3		3	PRDM12	9	133556768	Silent	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	2076120	133556768	7656663	759	12750										
GBGT1	26301	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr9	136037733	136037733	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	cgtggggcagactcaccacaGgacactgaggcttgtgcccg	14	13	1	2	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	GBGT1-90	NM_021996	exon2	c.C67A	p.L23M	ACCACAGGACACT	.	121	51	81	0	.	0	0	0	0	0	T	136037733	G	T	136037733	3	4	62	1	0	0	0	0	1	0	0	0	6292	991	35	3	1000	3	GBGT1	9	136037733	Missense_Mutation	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	2480965	136037733	5175698	760	12751										
DBH	1621	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr9	136501745	136501745	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gtgcggaggctcaaggctggCgtcctgtttgggatgtccga	17	9	1	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	DBH-516	NM_000787	exon1	c.C252T	p.G84G	GGCTGGCGTCCTG	.	69	26	51	0	.	0	0	0	0	0	T	136501745	C	T	136501745	2	4	62	1	0	0	0	0	0	0	0	1	4256	755	27	1		1	DBH	9	136501745	Silent	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	464012	136501745	4711686	761	12752										
KIAA1984	84960	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr9	139700573	139700573	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ccagaggaacacggaggagaAcctggagctgcagatggagg	17	8	0	3	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	KIAA1984-91	NM_001039374	exon10	c.A992G	p.N331S	AGGAGAACCTGGA	.	90	38	70	1	.	1	0	1	0	0	G	139700573	A	G	139700573	3	3	62	1	0	0	0	0	1	0	0	0	8287	43	2	4	1030	4	KIAA1984	9	139700573	Missense_Mutation	SNP	A	TCGA-PK-A5HB-01A-11D-A29I-10	3198828	139700573	1512858	762	12753										
SSNA1	8636	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr9	140084326	140084326	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	tgggaacctgaccaaggctaCagccccagaccagaaaagta	10	12	0	3	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SSNA1-153	NM_003731	exon3	c.C320T	p.T107I	AGGCTACAGCCCC	.	113	47	100	0	.	160	94	66	0	0	T	140084326	C	T	140084326	3	4	62	1	0	0	0	0	1	0	0	0	15224	478	17	3	330	3	SSNA1	9	140084326	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	383753	140084326	1129105	763	12754										
TPRN	286262	hgsc.bcm.edu	37	chr9	140087024	140087025	+	In_Frame_Ins	INS	-	-	TCC													0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	cctcttcctcctcttcctctINStcctcctcctcctcctcctc					rs77086130		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TPRN-90	NM_001128228	exon2	c.1845_1846insGGA	p.E615delinsEE	TTCCTCTTCCTCC	.	91	0	82	0	.	0	0	0	0	0	TCC	140087025	-	TCC	140087024	7	5	62	1	0	1	1	0	0	0	0	0	16459	1606	56	0	382	0	TPRN	9	140087024	In_Frame_Ins	INS	-	TCGA-PK-A5HB-01A-11D-A29I-10	2698	140087024	1126407	764	12755										
C9orf173	441476	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr9	140145761	140145761	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gatgaattctgaccagaaggCagtgaaattcctggcaaatt	10	7	1	4	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	C9orf173-46	NM_001256701	exon1	c.C23T	p.A8V	AGAAGGCAGTGAA	.	195	87	165	1	.	0	0	0	0	0	T	140145761	C	T	140145761	3	4	62	1	0	0	0	0	1	0	0	0	2478	710	25	3	25	3	C9orf173	9	140145761	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	58737	140145761	1067670	765	12756										
EHMT1	79813	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	140671199	140671199	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gctccaaggccaaagaggtgAcgatagctaaagcagacacc	11	11	0	3	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	EHMT1-154	NM_001145527	exon12	c.A1921G	p.T641A	GAGGTGACGATAG	.	246	110	163	1	.	35	15	20	0	0	G	140671199	A	G	140671199	3	3	62	1	0	0	0	0	1	0	0	0	4994	275	10	4	1967	4	EHMT1	9	140671199	Missense_Mutation	SNP	A	TCGA-PK-A5HB-01A-11D-A29I-10	525438	140671199	542232	766	12757										
CACNA1B	774	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr9	140850238	140850238	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	agatcgagcgagagctcaacGggtacctggagtggatcttc	14	9	2	2	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CACNA1B-138	NM_001243812	exon8	c.G1159A	p.G387R	CTCAACGGGTACC	.	160	68	103	1	.	0	0	0	0	0	A	140850238	G	A	140850238	3	1	62	1	0	0	0	0	1	0	0	0	2545	1116	39	1	1189	1	CACNA1B	9	140850238	Missense_Mutation	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	179039	140850238	363193	767	12758										
DIP2C	22982	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	433695	433695	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	cctcacttactgtcaggatgCcatgccagagcccgacgtcc	9	16	2	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	DIP2C-156	NM_014974	exon14	c.G1652A	p.G551D	AGGATGCCATGCC	.	313	135	208	2	.	0	0	0	0	0	T	433695	C	T	433695	3	4	62	1	0	0	0	0	1	0	0	0	4540	739	26	3	3114	3	DIP2C	10	433695	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10		433695	135101052	768	12759										
ADARB2	105	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr10	1284298	1284298	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	agcccctggtcactgaggtgCtcgccgctgatgcacttggt	13	13	1	2	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ADARB2-153	NM_018702	exon5	c.G1257A	p.E419E	GAGGTGCTCGCCG	.	181	68	89	0	.	0	0	0	0	0	T	1284298	C	T	1284298	2	4	62	1	0	0	0	0	0	0	0	1	283	796	28	3		3	ADARB2	10	1284298	Silent	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	850603	1284298	134250449	769	12760										
PITRM1	10531	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr10	3205972	3205972	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ctgcttaagctgctcccatgTaagctccgggatgcacagtg	11	12	0	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PITRM1-91	NM_014889	exon7	c.A736T	p.T246S	CCCATGTAAGCTC	.	174	81	127	0	.	101	58	43	0	0	A	3205972	T	A	3205972	3	1	62	1	0	0	0	0	1	0	0	0	11982	1638	57	5	2461	5	PITRM1	10	3205972	Missense_Mutation	SNP	T	TCGA-PK-A5HB-01A-11D-A29I-10	1921674	3205972	132328775	770	12761										
UCN3	114131	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr10	5415774	5415774	+	Frame_Shift_Del	DEL	C	C	-													0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	acaagttctacaaagccaagCccatcttcagctgcctcaac					novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	UCN3-90	NM_053049	exon2	c.91delC	p.P31fs	GCCAAGCCCATCT	.	98	48	75	0	.	0	0	0	0	0	-	5415774	C	-	5415774	7	5	62	1	0	1	0	1	0	0	0	0	16967	739	26	0	93	0	UCN3	10	5415774	Frame_Shift_Del	DEL	C	TCGA-PK-A5HB-01A-11D-A29I-10	2209802	5415774	130118973	771	12762										
SFMBT2	57713	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	chr10	7213881	7213881	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gtcccctcgggcttggtcggCgggcacttctccccttcctc	11	18	1	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SFMBT2-141	NM_001029880	exon19	c.G2391A	p.P797P	GGTCGGCGGGCAC	.	39	21	19	0	.	4	0	4	0	0	T	7213881	C	T	7213881	2	4	62	1	0	0	0	0	0	0	0	1	14193	755	27	1		1	SFMBT2	10	7213881	Silent	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	1798107	7213881	128320866	772	12763										
ITIH2	3698	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr10	7788557	7788557	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	tctgattctgttttgctaggCcagttcatgcaggaaccaaa	9	9	3	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ITIH2-93	NM_002216	exon20	c.C2583T	p.G861G	GCTAGGCCAGTTC	.	226	101	202	0	.	0	0	0	0	0	T	7788557	C	T	7788557	2	4	62	1	0	0	0	0	0	0	0	1	7925	753	26	3		3	ITIH2	10	7788557	Silent	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	574676	7788557	127746190	773	12764										
KIN	22944	broad.mit.edu;bcgsc.ca	37	chr10	7817764	7817765	+	Splice_Site	INS	-	-	A													0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	cgtaaaagtagggacctcctINSaaaaaaaagaaagttttaag					novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	KIN-230	NM_012311	exon7	c.559-2->T	.	ACCTCCTAAAAAA	.	32	9	25	0	.	0	0	0	0	0	A	7817765	-	A	7817764	8	5	62	1	0	1	1	0	0	0	1	0	8336	1536	53	0	656	0	KIN	10	7817764	Splice_Site	INS	-	TCGA-PK-A5HB-01A-11D-A29I-10	29207	7817764	127716983	774	12765										
CUBN	8029	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr10	16930425	16930425	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	aataaacttaccttctaagtGgaaggacacaaaagtcaaga	7	7	2	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CUBN-166	NM_001081	exon56	c.C8896A	p.H2966N	CTAAGTGGAAGGA	.	66	29	75	0	.	0	0	0	0	0	T	16930425	G	T	16930425	3	4	62	1	0	0	0	0	1	0	0	0	4057	1348	47	3	2023	3	CUBN	10	16930425	Missense_Mutation	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	9112661	16930425	118604322	775	12766										
CUBN	8029	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr10	17024637	17024637	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	tctctccactgggagcctggAaaatcccaccacaacctgga	8	15	1	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CUBN-166	NM_001081	exon31	c.T4541C	p.F1514S	GCCTGGAAAATCC	.	51	26	27	0	.	0	0	0	0	0	G	17024637	A	G	17024637	3	3	62	1	0	0	0	0	1	0	0	0	4057	246	9	4	6478	4	CUBN	10	17024637	Missense_Mutation	SNP	A	TCGA-PK-A5HB-01A-11D-A29I-10	94212	17024637	118510110	776	12767										
CUBN	8029	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr10	17130173	17130173	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	aattatttacctcaaggtaaTctttgttgcagtcatcatgg	7	7	4	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CUBN-166	NM_001081	exon15	c.A1937T	p.D646V	AGGTAATCTTTGT	.	87	40	77	1	.	0	0	0	0	0	A	17130173	T	A	17130173	3	1	62	1	0	0	0	0	1	0	0	0	4057	1435	50	5	9146	5	CUBN	10	17130173	Missense_Mutation	SNP	T	TCGA-PK-A5HB-01A-11D-A29I-10	105536	17130173	118404574	777	12768										
CUBN	8029	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr10	17146555	17146555	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	tgatgttttctgtacagttgAcacctgtccaacctgagtca	8	10	2	3	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CUBN-166	NM_001081	exon12	c.T1280C	p.V427A	CAGTTGACACCTG	.	281	117	244	0	.	0	0	0	0	0	G	17146555	A	G	17146555	3	3	62	1	0	0	0	0	1	0	0	0	4057	275	10	4	9815	4	CUBN	10	17146555	Missense_Mutation	SNP	A	TCGA-PK-A5HB-01A-11D-A29I-10	16382	17146555	118388192	778	12769										
TRDMT1	1787	broad.mit.edu	37	chr10	17199765	17199766	+	Frame_Shift_Ins	INS	-	-	G													0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ggatgtacagattcaattttINSggggaactccatcagtacct					novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TRDMT1-227	NM_004412	exon8	c.562_563insC	p.K188fs	CAATTTTGGGGAA	.	14	6	13	0	.	0	0	0	0	0	G	17199766	-	G	17199765	7	5	62	1	0	1	1	0	0	0	0	0	16505	1821	63	0	629	0	TRDMT1	10	17199765	Frame_Shift_Ins	INS	-	TCGA-PK-A5HB-01A-11D-A29I-10	53210	17199765	118334982	779	12770										
KIAA1217	56243	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr10	24762792	24762792	+	Frame_Shift_Del	DEL	C	C	-													0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gctcactataatgcccacggCccccctcacaccatgcagcc					novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	KIAA1217-98	NM_019590	exon6	c.1482delC	p.G494fs	CCACGGCCCCCCT	.	99	38	74	0	.	0	0	0	0	0	-	24762792	C	-	24762792	7	5	62	1	0	1	0	1	0	0	0	0	8237	726	26	0	1504	0	KIAA1217	10	24762792	Frame_Shift_Del	DEL	C	TCGA-PK-A5HB-01A-11D-A29I-10	7563027	24762792	110771955	780	12771										
ANKRD26	22852	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr10	27324108	27324108	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	tacccgttctaaacccaaagTcttttctctgagggcatctc	6	13	4	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ANKRD26-138	NM_014915	exon24	c.A3271G	p.T1091A	CCAAAGTCTTTTC	.	108	56	105	1	.	2	1	1	0	0	C	27324108	T	C	27324108	3	2	62	1	0	0	0	0	1	0	0	0	654	1667	58	4	1905	4	ANKRD26	10	27324108	Missense_Mutation	SNP	T	TCGA-PK-A5HB-01A-11D-A29I-10	2561316	27324108	108210639	781	12772										
MASTL	84930	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr10	27470451	27470451	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	agaaaagttatctgataatgCtcaaagtgcagtagaaatac	8	5	2	3	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	MASTL-522	NM_001172303	exon11	c.C2423T	p.A808V	ATAATGCTCAAAG	.	58	24	99	0	.	32	20	12	0	0	T	27470451	C	T	27470451	3	4	62	1	0	0	0	0	1	0	0	0	9356	797	28	3	2465	3	MASTL	10	27470451	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	146343	27470451	108064296	782	12773										
MKX	283078	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr10	27964211	27964211	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ctttacttctgctatatgggAcgacttctggatgatgcagc	10	9	2	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	MKX-91	NM_001242702	exon7	c.T1006G	p.S336A	TATGGGACGACTT	.	102	39	62	0	.	1	1	0	0	0	C	27964211	A	C	27964211	3	2	62	1	0	0	0	0	1	0	0	0	9638	275	10	5	56	5	MKX	10	27964211	Missense_Mutation	SNP	A	TCGA-PK-A5HB-01A-11D-A29I-10	493760	27964211	107570536	783	12774										
ZNF438	220929	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	31139259	31139259	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ctcttattctgcaaacctttCctactctgtattgttccaga	4	12	3	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ZNF438-154	NM_182755	exon7	c.G75C	p.R25S	ACCTTTCCTACTC	.	133	64	132	2	.	0	0	0	0	0	G	31139259	C	G	31139259	3	3	62	1	0	0	0	0	1	0	0	0	17947	854	30	3	2419	3	ZNF438	10	31139259	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	3175048	31139259	104395488	784	12775										
FZD8	8325	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr10	35929513	35929513	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	agcagagcaccgaccacaggCcgatccagaagacggtgaag	13	12	0	4	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	FZD8-612	NM_031866	exon1	c.G845A	p.G282D	CACAGGCCGATCC	.	185	91	140	1	.	7	3	4	0	0	T	35929513	C	T	35929513	3	4	62	1	0	0	0	0	1	0	0	0	6155	739	26	3	1243	3	FZD8	10	35929513	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	4790254	35929513	99605234	785	12776										
ANKRD30A	91074	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	37442574	37442574	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	caaaaagaaatagataaaatAaatggaaaattagaaggtaa	7	1	0	3	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ANKRD30A-161	NM_052997	exon13	c.A1614G	p.I538M	TAAAATAAATGGA	.	401	63	390	1	.	0	0	0	0	0	G	37442574	A	G	37442574	3	3	62	1	0	0	0	0	1	0	0	0	658	352	13	4	1664	4	ANKRD30A	10	37442574	Missense_Mutation	SNP	A	TCGA-PK-A5HB-01A-11D-A29I-10	1513061	37442574	98092173	786	12777										
ANKRD30A	91074	broad.mit.edu	37	chr10	37478469	37478469	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	caaaaagaaatagataaaatAaatggaaaattagaaggtaa	7	1	0	3	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ANKRD30A-161	NM_052997	exon25	c.A2328G	p.I776M	TAAAATAAATGGA	.	136	32	148	0	.	0	0	0	0	0	G	37478469	A	G	37478469	3	3	62	1	0	0	0	0	1	0	0	0	658	352	13	4	2426	4	ANKRD30A	10	37478469	Missense_Mutation	SNP	A	TCGA-PK-A5HB-01A-11D-A29I-10	35895	37478469	98056278	787	12778										
ANKRD30A	91074	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr10	37508025	37508025	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	aacaccaataccaggaaaagGaaaataaatactttgaggac	7	7	0	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ANKRD30A-161	NM_052997	exon34	c.G3217A	p.E1073K	GAAAAGGAAAATA	.	230	94	212	0	.	0	0	0	0	0	A	37508025	G	A	37508025	3	1	62	1	0	0	0	0	1	0	0	0	658	1175	41	3	3351	3	ANKRD30A	10	37508025	Missense_Mutation	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	29556	37508025	98026722	788	12779										
ALOX5	240	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr10	45869760	45869760	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	acggtcaccgtggccactggCagccagtggttcgccggcac	14	15	1	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ALOX5-228	NM_000698	exon1	c.C33T	p.G11G	CACTGGCAGCCAG	.	158	48	76	0	.	0	0	0	0	0	T	45869760	C	T	45869760	2	4	62	1	0	0	0	0	0	0	0	1	540	697	25	3		3	ALOX5	10	45869760	Silent	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	8361735	45869760	89664987	789	12780										
ALOX5	240	broad.mit.edu;bcgsc.ca	37	chr10	45939230	45939230	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gtcggagtacctgaccgtggTgatcttcaccgcctccgccc	11	16	2	2	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ALOX5-228	NM_000698	exon12	c.T1628A	p.V543E	CCGTGGTGATCTT	.	142	83	62	1	.	0	0	0	0	0	A	45939230	T	A	45939230	3	1	62	1	0	0	0	0	1	0	0	0	540	1696	59	5	1674	5	ALOX5	10	45939230	Missense_Mutation	SNP	T	TCGA-PK-A5HB-01A-11D-A29I-10	69470	45939230	89595517	790	12781										
MARCH8	220972	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr10	46028623	46028623	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	agcagagatggcatcctgggAtggaatggcagagatctgat	15	6	1	3	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	MARCH8-68	NM_001002266	exon2	c.T37C	p.S13P	CCTGGGATGGAAT	.	117	50	79	0	.	5	4	1	0	0	G	46028623	A	G	46028623	3	3	62	1	0	0	0	0	1	0	0	0	9335	333	12	4	862	4	MARCH8	10	46028623	Missense_Mutation	SNP	A	TCGA-PK-A5HB-01A-11D-A29I-10	89393	46028623	89506124	791	12782										
GPRIN2	9721	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	47000008	47000008	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	tccagcctggaggaggtgccGtcccctgtgcgggatgtgcg	17	12	0	0	rs111800394		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	GPRIN2-90	NM_014696	exon3	c.G1128A	p.P376P	GGTGCCGTCCCCT	.	200	49	123	1	G|0.500;A|0.500	0	0	0	0	0	A	47000008	G	A	47000008	2	1	62	1	0	0	0	0	0	0	0	1	6751	1132	40	1		1	GPRIN2	10	47000008	Silent	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	971385	47000008	88534739	792	12783										
PCDH15	65217	ucsc.edu;bcgsc.ca	37	chr10	55566476	55566476	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	aatcatggactcctgttcaaCtgtgcttttcagcctgttcc	7	12	3	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PCDH15-193	.	.	.	.	GTTCAACTGTGCT	.	231	78	212	2	.	0	0	0	0	0	T	55566476	C	T	55566476	3	4	62	1	0	0	0	0	1	0	0	0	11540	565	20	3	140	3	PCDH15	10	55566476	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	8566468	55566476	79968271	793	12784										
C10orf107	219621	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr10	63441022	63441022	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	tggatttctctattattcagTattcaaaatttatgacttta	4	5	3	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	C10orf107-90	NM_173554	exon2	c.T22C	p.Y8H	ATTCAGTATTCAA	.	40	23	34	0	.	0	0	0	0	0	C	63441022	T	C	63441022	3	2	62	1	0	0	0	0	1	0	0	0	1585	1638	57	4	24	4	C10orf107	10	63441022	Missense_Mutation	SNP	T	TCGA-PK-A5HB-01A-11D-A29I-10	7874546	63441022	72093725	794	12785										
CCAR1	55749	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	70496802	70496802	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gctgcagcagctgcattacaAcaggtaaatctttaatatgt	8	8	1	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CCAR1-159	NM_018237	exon3	c.A243G	p.Q81Q	ATTACAACAGGTA	.	199	70	187	1	.	0	0	0	0	0	G	70496802	A	G	70496802	2	3	62	1	0	0	0	0	0	0	0	1	2736	40	2	4		4	CCAR1	10	70496802	Silent	SNP	A	TCGA-PK-A5HB-01A-11D-A29I-10	7055780	70496802	65037945	795	12786										
C10orf35	219738	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr10	71391540	71391540	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	tggggaaatcgtgcaggatgAcgacccccgagtgaggacca	15	10	0	2	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	C10orf35-92	NM_145306	exon3	c.A41T	p.D14V	AGGATGACGACCC	.	254	102	181	0	.	26	10	16	0	0	T	71391540	A	T	71391540	3	4	62	1	0	0	0	0	1	0	0	0	1607	275	10	5	43	5	C10orf35	10	71391540	Missense_Mutation	SNP	A	TCGA-PK-A5HB-01A-11D-A29I-10	894738	71391540	64143207	796	12787										
PPA1	5464	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr10	71969033	71969033	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	catgagtgcttttaataataTcaatggcaaagtcctataat	6	6	1	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PPA1-153	NM_021129	exon8	c.A653T	p.D218V	ATAATATCAATGG	.	74	28	84	0	.	489	281	208	0	0	A	71969033	T	A	71969033	3	1	62	1	0	0	0	0	1	0	0	0	12315	1435	50	5	232	5	PPA1	10	71969033	Missense_Mutation	SNP	T	TCGA-PK-A5HB-01A-11D-A29I-10	577493	71969033	63565714	797	12788										
ADAMTS14	140766	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr10	72434451	72434451	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	atggtagtggacacgccaccCacactaccacgacactccag	8	16	0	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ADAMTS14-232	NM_080722	exon2	c.C222T	p.P74P	GCCACCCACACTA	.	75	32	64	0	.	0	0	0	0	0	T	72434451	C	T	72434451	2	4	62	1	0	0	0	0	0	0	0	1	259	581	21	3		3	ADAMTS14	10	72434451	Silent	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	465418	72434451	63100296	798	12789										
CDH23	64072	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr10	73553114	73553114	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	caggagtcctacaggctaacGgtggtggccaccgaccgggg	16	12	0	0	rs142788731	by1000genomes	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CDH23-563	NM_022124	exon46	c.G6429A	p.T2143T	GCTAACGGTGGTG	.	196	84	147	0	G|0.999;A|0.001	0	0	0	0	0	A	73553114	G	A	73553114	2	1	62	1	0	0	0	0	0	0	0	1	3114	1103	39	1		1	CDH23	10	73553114	Silent	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	1118663	73553114	61981633	799	12790										
SYNPO2L	79933	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr10	75407283	75407283	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gggggcggggtcttgggagcCattggagggggggtcttagg	24	5	2	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SYNPO2L-91	NM_001114133	exon4	c.G2127A	p.M709I	GGGAGCCATTGGA	.	35	14	23	0	.	0	0	0	0	0	T	75407283	C	T	75407283	3	4	62	1	0	0	0	0	1	0	0	0	15495	594	21	3	810	3	SYNPO2L	10	75407283	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	1854169	75407283	60127464	800	12791										
SYNPO2L	79933	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr10	75408109	75408109	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gcaaggggctgggtgggagcAcagctgcctctgggggagca	20	9	1	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SYNPO2L-91	NM_001114133	exon4	c.T1301C	p.V434A	GGGAGCACAGCTG	.	20	8	19	0	.	2	0	2	0	0	G	75408109	A	G	75408109	3	3	62	1	0	0	0	0	1	0	0	0	15495	159	6	4	1636	4	SYNPO2L	10	75408109	Missense_Mutation	SNP	A	TCGA-PK-A5HB-01A-11D-A29I-10	826	75408109	60126638	801	12792										
NDST2	8509	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr10	75566103	75566103	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ggcagggcggagatggggatActcctcagtgctggtcacct	16	10	2	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	NDST2-91	NM_003635	exon6	c.T1378C	p.Y460H	GGGGATACTCCTC	.	92	40	61	0	.	17	6	11	0	0	G	75566103	A	G	75566103	3	3	62	1	0	0	0	0	1	0	0	0	10285	391	14	4	1313	4	NDST2	10	75566103	Missense_Mutation	SNP	A	TCGA-PK-A5HB-01A-11D-A29I-10	157994	75566103	59968644	802	12793										
NDST2	8509	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr10	75567679	75567679	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	tccacgcagtaccggtctagCagttcccgactccaggcatc	9	16	1	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	NDST2-91	NM_003635	exon3	c.G468A	p.L156L	GTCTAGCAGTTCC	.	191	74	147	0	.	16	10	6	0	0	T	75567679	C	T	75567679	2	4	62	1	0	0	0	0	0	0	0	1	10285	697	25	3		3	NDST2	10	75567679	Silent	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	1576	75567679	59967068	803	12794										
DLG5	9231	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr10	79581401	79581401	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gagctgagcatggccttgggCcaggtcccgccgctgttgga	16	12	0	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	DLG5-98	NM_004747	exon15	c.G2841A	p.W947X	CTTGGGCCAGGTC	.	68	29	47	0	.	7	4	3	0	0	T	79581401	C	T	79581401	4	4	62	1	0	0	0	0	0	1	0	0	4569	740	26	3	2990	3	DLG5	10	79581401	Nonsense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	4013722	79581401	55953346	804	12795										
DLG5	9231	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr10	79613277	79613277	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	agccgagtctggtcactcagGagccggctgtggagtgtgct	16	10	3	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	DLG5-98	NM_004747	exon5	c.C699T	p.L233L	ACTCAGGAGCCGG	.	41	14	29	0	.	10	3	7	0	0	A	79613277	G	A	79613277	2	1	62	1	0	0	0	0	0	0	0	1	4569	1161	41	3		3	DLG5	10	79613277	Silent	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	31876	79613277	55921470	805	12796										
ANXA11	311	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr10	81927056	81927056	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	cgggagcatcagtgatggtgCctcggcttccaaactactcg	12	12	1	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ANXA11-91	NM_145868	exon6	c.G575T	p.G192V	ATGGTGCCTCGGC	.	108	41	79	0	.	44	14	29	0	1	A	81927056	C	A	81927056	3	1	62	1	0	0	0	0	1	0	0	0	716	739	26	3	986	3	ANXA11	10	81927056	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	2313779	81927056	53607691	806	12797										
LDB3	11155	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr10	88469694	88469694	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ttcctacagccccgcagtggCcgcctcttcagcacctgcca	8	19	2	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	LDB3-92	NM_001171610	exon9	c.C1133T	p.A378V	CAGTGGCCGCCTC	.	46	19	51	0	.	0	0	0	0	0	T	88469694	C	T	88469694	3	4	62	1	0	0	0	0	1	0	0	0	8719	739	26	3	1484	3	LDB3	10	88469694	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	6542638	88469694	47065053	807	12798										
BMPR1A	657	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr10	88683197	88683197	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	agtgatccgtcatacgaagaTatgcgtgaggttgtgtgtgt	14	5	1	3	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	BMPR1A-1619	NM_004329	exon12	c.T1407A	p.D469E	CGAAGATATGCGT	.	240	101	160	0	.	26	15	11	0	0	A	88683197	T	A	88683197	3	1	62	1	0	0	0	0	1	0	0	0	1470	1403	49	5	1445	5	BMPR1A	10	88683197	Missense_Mutation	SNP	T	TCGA-PK-A5HB-01A-11D-A29I-10	213503	88683197	46851550	808	12799										
PLCE1	51196	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr10	96006241	96006241	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ccacagacaacagattattgCacttcgtggcaccaaagcac	7	13	0	2	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PLCE1-229	NM_016341	exon8	c.C2959T	p.H987Y	TTATTGCACTTCG	.	202	111	187	0	.	5	2	3	0	0	T	96006241	C	T	96006241	3	4	62	1	0	0	0	0	1	0	0	0	12063	710	25	3	3271	3	PLCE1	10	96006241	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	7323044	96006241	39528506	809	12800										
ALDH18A1	5832	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr10	97393407	97393407	+	Splice_Site	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	tccaaattggtcaccaaaatCtaaaaggattaaatagatgg	7	6	2	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ALDH18A1-117	NM_002860	exon7	c.559-1G>C	.	CAAAATCTAAAAG	.	130	64	86	0	.	0	0	0	0	0	G	97393407	C	G	97393407	5	3	62	1	0	0	0	0	0	0	1	0	489	927	32	3	1881	3	ALDH18A1	10	97393407	Splice_Site	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	1387166	97393407	38141340	810	12801										
ANKRD2	26287	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	99338087	99338087	+	Nonsense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	acctcatcgagctgcggaagAaacgcaagcagaagaagcgg	13	10	1	3	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ANKRD2-90	NM_001129981	exon3	c.A361T	p.K121X	CGGAAGAAACGCA	.	152	62	131	2	.	0	0	0	0	0	T	99338087	A	T	99338087	4	4	62	1	0	0	0	0	0	1	0	0	647	247	9	5	371	5	ANKRD2	10	99338087	Nonsense_Mutation	SNP	A	TCGA-PK-A5HB-01A-11D-A29I-10	1944680	99338087	36196660	811	12802										
HPS1	3257	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr10	100202968	100202968	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	cagtagaagaggacctctgcGccctcagtggccaccaagac	11	14	2	3	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	HPS1-91	NM_000195	exon3	c.C30T	p.G10G	CTCTGCGCCCTCA	.	201	72	142	0	.	54	26	28	0	0	A	100202968	G	A	100202968	2	1	62	1	0	0	0	0	0	0	0	1	7360	1074	38	1		1	HPS1	10	100202968	Silent	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	864881	100202968	35331779	812	12803										
ABCC2	1244	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr10	101594287	101594287	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ttggcattatttatgtatctGttcaggtaggtttggaaatg	11	3	2	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ABCC2-91	NM_000392	exon24	c.G3409A	p.V1137I	GTATCTGTTCAGG	.	228	94	155	0	.	0	0	0	0	0	A	101594287	G	A	101594287	3	1	62	1	0	0	0	0	1	0	0	0	53	1377	48	3	3503	3	ABCC2	10	101594287	Missense_Mutation	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	1391319	101594287	33940460	813	12804										
LDB1	8861	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	103867930	103867930	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gctgttccaggggctgttggCgcccagtgcaggggagttgt	18	9	0	0	rs141161148	byfrequency	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	LDB1-289	NM_001113407	exon11	c.G1156A	p.A386T	TGTTGGCGCCCAG	.	188	75	154	1	C|0.999;T|0.001	82	37	45	0	0	T	103867930	C	T	103867930	3	4	62	1	0	0	0	0	1	0	0	0	8717	768	27	1	83	1	LDB1	10	103867930	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	2273643	103867930	31666817	814	12805										
PPRC1	23082	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr10	103900009	103900009	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	cattggtcgactctgcccaaGccagccccatgccagttgac	9	16	1	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PPRC1-227	NM_015062	exon5	c.G1744A	p.A582T	GCCCAAGCCAGCC	.	239	98	197	0	.	22	10	12	0	0	A	103900009	G	A	103900009	3	1	62	1	0	0	0	0	1	0	0	0	12442	971	34	3	1762	3	PPRC1	10	103900009	Missense_Mutation	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	32079	103900009	31634738	815	12806										
CNNM2	54805	hgsc.bcm.edu;bcgsc.ca	37	chr10	104679763	104679763	+	Frame_Shift_Del	DEL	C	C	-													0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	cgtggatcccgatgactgtaCccccctgaaaaccatcacca					novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CNNM2-515	NM_199076	exon1	c.1526delC	p.T509fs	ACTGTACCCCCCT	.	207	93	154	1	.	0	0	0	0	0	-	104679763	C	-	104679763	7	5	62	1	0	1	0	1	0	0	0	0	3619	507	18	0	1528	0	CNNM2	10	104679763	Frame_Shift_Del	DEL	C	TCGA-PK-A5HB-01A-11D-A29I-10	779754	104679763	30854984	816	12807										
NEURL	9148	hgsc.bcm.edu	37	chr10	105344837	105344837	+	Silent	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	cccctgcacagcggcgacatCctgggcctggtggtcaacgc	13	16	1	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	NEURL-226	NM_004210	exon4	c.C1194A	p.I398I	CGACATCCTGGGC	.	21	14	0	0	.	2	2	0	0	0	A	105344837	C	A	105344837	2	1	62	1	0	0	0	0	0	0	0	1	10374	845	30	3		3	NEURL	10	105344837	Silent	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	665074	105344837	30189910	817	12808										
SLK	9748	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr10	105750547	105750547	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	tattagcatcttgtgatcacCcaaatatagtcaagcttcta	5	9	4	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SLK-549	NM_014720	exon2	c.C265T	p.P89S	GATCACCCAAATA	.	83	35	88	0	.	44	25	19	0	0	T	105750547	C	T	105750547	3	4	62	1	0	0	0	0	1	0	0	0	14783	623	22	3	271	3	SLK	10	105750547	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	405710	105750547	29784200	818	12809										
SORCS3	22986	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr10	106675687	106675687	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gtcaatccaaccaacaaaagGaaggtaagagactgggtcag	11	8	2	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SORCS3-99	NM_014978	exon3	c.G792C	p.R264S	CAAAAGGAAGGTA	.	226	12	208	0	.	0	0	0	0	0	C	106675687	G	C	106675687	3	2	62	1	0	0	0	0	1	0	0	0	14967	1165	41	3	802	3	SORCS3	10	106675687	Missense_Mutation	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	925140	106675687	28859060	819	12810										
XPNPEP1	7511	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	111633180	111633180	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	tccgcgtcacatctgtggtgCcatccctttccaaaaaaagg	8	13	2	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	XPNPEP1-94	NM_020383	exon16	c.G1397A	p.G466D	GTGGTGCCATCCC	.	197	81	147	1	.	4	3	1	0	0	T	111633180	C	T	111633180	3	4	62	1	0	0	0	0	1	0	0	0	17480	739	26	3	627	3	XPNPEP1	10	111633180	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	4957493	111633180	23901567	820	12811										
ADRA2A	150	broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr10	112838493	112838493	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gtcgcacccgcgtgccacccAgccgccggggtccggacgcc	14	20	0	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ADRA2A-90	NM_000681	exon1	c.A739G	p.S247G	CCACCCAGCCGCC	.	43	16	21	1	.	0	0	0	0	0	G	112838493	A	G	112838493	3	3	62	1	0	0	0	0	1	0	0	0	337	188	7	4	741	4	ADRA2A	10	112838493	Missense_Mutation	SNP	A	TCGA-PK-A5HB-01A-11D-A29I-10	1205313	112838493	22696254	821	12812										
TCF7L2	6934	broad.mit.edu;bcgsc.ca	37	chr10	114711348	114711348	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	tacctccccaacggatcgctCtcgcccaccgcccgaaccgt	7	21	1	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TCF7L2-586	NM_001198526	exon3	c.C363G	p.L121L	ATCGCTCTCGCCC	.	167	73	118	2	.	11	5	6	0	0	G	114711348	C	G	114711348	2	3	62	1	0	0	0	0	0	0	0	1	15735	900	32	3		3	TCF7L2	10	114711348	Silent	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	1872855	114711348	20823399	822	12813										
C10orf118	55088	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr10	115891096	115891096	+	Splice_Site	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	tctttcaacaacctactttcCtgaatagtaagtaaaacaaa	3	9	2	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	C10orf118-92	NM_018017	exon13	c.1912-1G>T	.	ACTTTCCTGAATA	.	96	44	58	0	.	0	0	0	0	0	A	115891096	C	A	115891096	5	1	62	1	0	0	0	0	0	0	1	0	1591	695	24	3	805	3	C10orf118	10	115891096	Splice_Site	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	1179748	115891096	19643651	823	12814										
RGS10	6001	ucsc.edu;bcgsc.ca;mdanderson.org	37	chr10	121259635	121259635	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ttttgggggctcatgtgttaTaaattctggaagctctttta	10	5	3	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	RGS10-226	NM_001005339	exon5	c.A536T	p.Y179F	GTGTTATAAATTC	.	34	17	31	1	.	16	12	4	0	0	A	121259635	T	A	121259635	3	1	62	1	0	0	0	0	1	0	0	0	13328	1406	49	5	13	5	RGS10	10	121259635	Missense_Mutation	SNP	T	TCGA-PK-A5HB-01A-11D-A29I-10	5368539	121259635	14275112	824	12815										
FGFR2	2263	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr10	123324025	123324025	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	cagttacttactcttgttgtTactgttctcactgacaaaat	5	9	2	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	FGFR2-2607	NM_001144914	exon3	c.A445G	p.N149D	TGTTGTTACTGTT	.	128	55	91	0	.	0	0	0	0	0	C	123324025	T	C	123324025	3	2	62	1	0	0	0	0	1	0	0	0	5885	1754	61	4	2336	4	FGFR2	10	123324025	Missense_Mutation	SNP	T	TCGA-PK-A5HB-01A-11D-A29I-10	2064390	123324025	12210722	825	12816										
HMX2	3167	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	chr10	124909596	124909596	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ctacccgggaagcaacctctCggccttacctctctacaacc	6	18	2	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	HMX2-90	NM_005519	exon2	c.C779T	p.S260L	ACCTCTCGGCCTT	.	74	29	14	0	.	1	0	1	0	0	T	124909596	C	T	124909596	3	4	62	1	0	0	0	0	1	0	0	0	7268	893	31	1	785	1	HMX2	10	124909596	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	1585571	124909596	10625151	826	12817										
DHX32	55760	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr10	127555708	127555708	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gtgcatatcacgcccccgtgCtggtagtggatggaaagaca	13	10	1	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	DHX32-290	NM_018180	exon2	c.G327A	p.Q109Q	CCCGTGCTGGTAG	.	138	53	116	0	.	35	19	16	0	0	T	127555708	C	T	127555708	2	4	62	1	0	0	0	0	0	0	0	1	4516	796	28	3		3	DHX32	10	127555708	Silent	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	2646112	127555708	7979039	827	12818										
PWWP2B	170394	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr10	134219477	134219477	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ggcaggactgtggccgtgggGgacatcgtctggggtaagat	19	7	1	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PWWP2B-90	NM_001098637	exon2	c.G1473A	p.G491G	CGTGGGGGACATC	.	659	431	263	1	.	131	41	89	1	0	A	134219477	G	A	134219477	2	1	62	1	0	0	0	0	0	0	0	1	12881	1219	43	3		3	PWWP2B	10	134219477	Silent	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	6663769	134219477	1315270	828	12819										
GPR123	84435	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr10	134942688	134942688	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ggcagcccccgcagctcgcgCacagacagcccccccagctc	10	22	0	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	GPR123-90	NM_001083909	exon7	c.C1356T	p.R452R	CTCGCGCACAGAC	.	236	114	66	1	.	0	0	0	0	0	T	134942688	C	T	134942688	2	4	62	1	0	0	0	0	0	0	0	1	6657	697	25	3		3	GPR123	10	134942688	Silent	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	723211	134942688	592059	829	12820										
ADAM8	101	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr10	135086884	135086884	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	tggtacacggcgtgccgtccGccctcgccaccttcatccag	10	18	1	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ADAM8-90	NM_001164489	exon6	c.C447T	p.G149G	CCGTCCGCCCTCG	.	242	100	114	0	.	0	0	0	0	0	A	135086884	G	A	135086884	2	1	62	1	0	0	0	0	0	0	0	1	252	1074	38	1		1	ADAM8	10	135086884	Silent	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	144196	135086884	447863	830	12821										
PHRF1	57661	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr11	608624	608625	+	Frame_Shift_Ins	INS	-	-	GACCGCTCCAG													0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	agagccggcggtcctccagtINSgaccgctccagcagccgaga					novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PHRF1-22	NM_020901	exon14	c.3165_3166insGACCGCTCCAG	p.S1055fs	CTCCAGTGACCGC	.	67	10	137	0	.	0	0	0	0	0	GACCGCTCCAG	608625	-	GACCGCTCCAG	608624	7	5	62	1	0	1	1	0	0	0	0	0	11890	1693	59	0	3215	0	PHRF1	11	608624	Frame_Shift_Ins	INS	-	TCGA-PK-A5HB-01A-11D-A29I-10		608624	134397892	831	12822										
PHRF1	57661	broad.mit.edu	37	chr11	610978	610978	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	tgaagaagctgcacatgcagGagcgtgctgtggaggaggtg	18	6	0	2	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PHRF1-22	NM_020901	exon17	c.G4699A	p.E1567K	ATGCAGGAGCGTG	.	133	3	181	0	.	11	11	0	0	0	A	610978	G	A	610978	3	1	62	1	0	0	0	0	1	0	0	0	11890	1175	41	3	4761	3	PHRF1	11	610978	Missense_Mutation	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	2354	610978	134395538	832	12823										
DRD4	1815	hgsc.bcm.edu	37	chr11	637463	637463	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gcggtgctcgcggggaactcGctcgtgtgcgtgagcgtggc	19	11	0	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	DRD4-90	NM_000797	exon1	c.G159A	p.S53S	GAACTCGCTCGTG	.	26	19	2	0	.	2	0	2	0	0	A	637463	G	A	637463	2	1	62	1	0	0	0	0	0	0	0	1	4770	1074	38	1		1	DRD4	11	637463	Silent	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	26485	637463	134369053	833	12824										
DEAF1	10522	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	686974	686974	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	actgtaccagttctccccctGcttgatgcaccgtccccggc	8	18	1	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	DEAF1-90	NM_021008	exon5	c.C688T	p.Q230X	CCCCCTGCTTGAT	.	116	76	166	1	.	8	6	2	0	0	A	686974	G	A	686974	4	1	62	1	0	0	0	0	0	1	0	0	4386	1328	46	3	1041	3	DEAF1	11	686974	Nonsense_Mutation	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	49511	686974	134319542	834	12825										
MUC5B	727897	hgsc.bcm.edu	37	chr11	1253980	1253980	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	caagggcgtacagctcagcgActggagggacggcgtctgca	16	11	2	0	rs202127660		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	.	NM_002458	exon17	c.A2045G	p.D682G	TCAGCGACTGGAG	.	96	9	50	0	.	0	0	0	0	0	G	1253980	A	G	1253980	3	3	62	1	0	0	0	0	1	0	0	0	10007	275	10	4	2120	4	MUC5B	11	1253980	Missense_Mutation	SNP	A	TCGA-PK-A5HB-01A-11D-A29I-10	567006	1253980	133752536	835	12826										
OR52D1	390066	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	5510498	5510498	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	actgtgagcatatgggcattGcccgactggcctgtgccaac	12	12	0	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	OR52D1-68	NM_001005163	exon1	c.G562A	p.A188T	GGCATTGCCCGAC	.	67	53	90	0	.	0	0	0	0	0	A	5510498	G	A	5510498	3	1	62	1	0	0	0	0	1	0	0	0	11143	1319	46	3	564	3	OR52D1	11	5510498	Missense_Mutation	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	4256518	5510498	129496018	836	12827										
DNHD1	144132	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	6566347	6566347	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ctgctttcctcatgtgcatgCtgtgagcttcaggtcttgcc	10	12	3	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	DNHD1-24	NM_144666	exon21	c.C4178T	p.A1393V	TGCATGCTGTGAG	.	172	134	186	0	.	0	0	0	0	0	T	6566347	C	T	6566347	3	4	62	1	0	0	0	0	1	0	0	0	4679	797	28	3	4261	3	DNHD1	11	6566347	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	1055849	6566347	128440169	837	12828										
LDHA	3939	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	18428915	18428915	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gttgtcctttttatctgatcTgtgattaaagcagtaatatt	7	5	2	2	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	LDHA-650	NM_001165415	exon7	c.T817G	p.C273G	CTGATCTGTGATT	.	46	29	67	1	.	1655	26	1629	0	0	G	18428915	T	G	18428915	3	3	62	1	0	0	0	0	1	0	0	0	8720	1580	55	5	1203	5	LDHA	11	18428915	Missense_Mutation	SNP	T	TCGA-PK-A5HB-01A-11D-A29I-10	11862568	18428915	116577601	838	12829										
IGSF22	283284	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr11	18728522	18728522	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ggctcactgtcaccgatttcAttccgagccaccactctgaa	7	15	4	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	IGSF22-140	NM_173588	exon21	c.T3519A	p.N1173K	GATTTCATTCCGA	.	121	96	152	0	.	1	1	0	0	0	T	18728522	A	T	18728522	3	4	62	1	0	0	0	0	1	0	0	0	7621	214	8	5	473	5	IGSF22	11	18728522	Missense_Mutation	SNP	A	TCGA-PK-A5HB-01A-11D-A29I-10	299607	18728522	116277994	839	12830										
PTPN5	84867	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	18765655	18765655	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	tgagctggatctgagggcggCgagggaggagggggtggcgg	25	5	1	2	rs150000507	byfrequency	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PTPN5-229	NM_032781	exon4	c.G189A	p.S63S	GGGCGGCGAGGGA	.	42	26	69	0	C|0.999;T|0.001	0	0	0	0	0	T	18765655	C	T	18765655	2	4	62	1	0	0	0	0	0	0	0	1	12826	755	27	1		1	PTPN5	11	18765655	Silent	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	37133	18765655	116240861	840	12831										
WT1	7490	hgsc.bcm.edu	37	chr11	32456694	32456694	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	acgtcggagcccatttgctgCggctcagacccggacgcccc	12	17	1	1	rs2234582	byfrequency	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	WT1-6891	NM_024424	exon1	c.G198T	p.P66P	TTGCTGCGGCTCA	.	7	7	0	0	C|0.748;A|0.252	0	0	0	0	0	A	32456694	C	A	32456694	2	1	62	1	0	0	0	0	0	0	0	1	17446	755	27	2		2	WT1	11	32456694	Silent	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	13691039	32456694	102549822	841	12832										
AGBL2	79841	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	47701524	47701524	+	Splice_Site	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ttcttgaaaccccatttttaCcttcatttggtcaggatcac	5	11	4	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	AGBL2-92	NM_024783	exon14	c.2016+1G>A	.	TTTTTACCTTCAT	.	32	23	43	0	.	0	0	0	0	0	T	47701524	C	T	47701524	5	4	62	1	0	0	0	0	0	0	1	0	376	521	18	3	719	3	AGBL2	11	47701524	Splice_Site	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	15244830	47701524	87304992	842	12833										
OR5M11	219487	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	56310506	56310506	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gtcgacatctgcggggttgcAtttgatgtatagcacaaatc	11	8	1	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	.	NM_001005245	exon1	c.T228C	p.N76N	GGTTGCATTTGAT	.	102	77	157	0	.	0	0	0	0	0	G	56310506	A	G	56310506	2	3	62	1	0	0	0	0	0	0	0	1	11203	214	8	4		4	OR5M11	11	56310506	Silent	SNP	A	TCGA-PK-A5HB-01A-11D-A29I-10	8608982	56310506	78696010	843	12834										
DDB1	1642	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	61099071	61099071	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	atacatgcccacctctttgaCgggccgaagcccctcggcgg	11	16	1	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	DDB1-661	NM_001923	exon2	c.G154A	p.V52I	CTTTGACGGGCCG	.	91	18	142	0	.	88	59	29	0	0	T	61099071	C	T	61099071	3	4	62	1	0	0	0	0	1	0	0	0	4329	536	19	1	3372	1	DDB1	11	61099071	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	4788565	61099071	73907445	844	12835										
BEST1	7439	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	61723382	61723382	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gcgcagcgtcagcaccgcagTctacaagcgcttccccagcg	11	17	2	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	BEST1-90	NM_004183	exon4	c.T440A	p.V147D	CCGCAGTCTACAA	.	139	95	67	0	.	3	0	3	0	0	A	61723382	T	A	61723382	3	1	62	1	0	0	0	0	1	0	0	0	1405	1667	58	5	450	5	BEST1	11	61723382	Missense_Mutation	SNP	T	TCGA-PK-A5HB-01A-11D-A29I-10	624311	61723382	73283134	845	12836										
SLC22A25	387601	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	62931536	62931536	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	aagtttccagtgattccagtAgctcttccccttggagtaaa	8	10	1	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SLC22A25-72	NM_199352	exon9	c.T1404G	p.A468A	TCCAGTAGCTCTT	.	152	116	236	0	.	0	0	0	0	0	C	62931536	A	C	62931536	2	2	62	1	0	0	0	0	0	0	0	1	14489	407	15	5		5	SLC22A25	11	62931536	Silent	SNP	A	TCGA-PK-A5HB-01A-11D-A29I-10	1208154	62931536	72074980	846	12837										
SLC22A12	116085	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	64368345	64368345	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ccagtgctgagtggcctggcCgcactgcttctgcccgagac	13	15	1	2	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SLC22A12-91	NM_144585	exon9	c.C1533T	p.A511A	CCTGGCCGCACTG	.	37	33	52	0	.	0	0	0	0	0	T	64368345	C	T	64368345	2	4	62	1	0	0	0	0	0	0	0	1	14478	639	23	1		1	SLC22A12	11	64368345	Silent	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	1436809	64368345	70638171	847	12838										
MEN1	4221	hgsc.bcm.edu	37	chr11	64572093	64572093	+	Frame_Shift_Del	DEL	G	G	-													0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gacagtcccaggaggcttccGggggggtcctgacactgcac					novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	MEN1-3017	NM_130800	exon10	c.1561delC	p.R521fs	GCTTCCGGGGGGG	.	25	18	24	1	.	0	0	0	0	0	-	64572093	G	-	64572093	7	5	62	1	0	1	0	1	0	0	0	0	9500	1115	39	0	290	0	MEN1	11	64572093	Frame_Shift_Del	DEL	G	TCGA-PK-A5HB-01A-11D-A29I-10	203748	64572093	70434423	848	12839										
ATG2A	23130	bcgsc.ca	37	chr11	64665394	64665394	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gaaccagtggtctctacgccTtcggcctgcccttccagggg	12	15	1	0	rs61741079	byfrequency	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ATG2A-69	NM_015104	exon35	c.A4911G	p.E1637E	TACGCCTTCGGCC	.	35	4	28	0	T|0.906;C|0.094	22	22	0	0	0	C	64665394	T	C	64665394	2	2	62	1	0	0	0	0	0	0	0	1	1094	1606	56	4		4	ATG2A	11	64665394	Silent	SNP	T	TCGA-PK-A5HB-01A-11D-A29I-10	93301	64665394	70341122	849	12840										
TCIRG1	10312	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr11	67817504	67817504	+	Frame_Shift_Del	DEL	G	G	-													0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gctccgatgaggaaaaggcaGggggcctggatgatgaagag					novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TCIRG1-227	NM_006019	exon17	c.2089delG	p.G697fs	AAGGCAGGGGGCC	.	59	35	79	0	.	0	0	0	0	0	-	67817504	G	-	67817504	7	5	62	1	0	1	0	1	0	0	0	0	15740	1000	35	0	2151	0	TCIRG1	11	67817504	Frame_Shift_Del	DEL	G	TCGA-PK-A5HB-01A-11D-A29I-10	3152110	67817504	67189012	850	12841										
SUV420H1	51111	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	67938597	67938597	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	tagagccttcacacatgctgTatctcgaccagttgacacaa	7	12	2	2	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SUV420H1-228	NM_017635	exon9	c.A862T	p.T288S	ATGCTGTATCTCG	.	59	42	86	0	.	13	0	13	0	0	A	67938597	T	A	67938597	3	1	62	1	0	0	0	0	1	0	0	0	15451	1638	57	5	1815	5	SUV420H1	11	67938597	Missense_Mutation	SNP	T	TCGA-PK-A5HB-01A-11D-A29I-10	121093	67938597	67067919	851	12842										
P2RY2	5029	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	72945404	72945404	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ccgcctcaagacctggaatgCgtccaccacatatatgttcc	7	15	1	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	P2RY2-503	NM_176071	exon3	c.C200T	p.A67V	GGAATGCGTCCAC	.	217	105	164	0	.	58	20	38	0	0	T	72945404	C	T	72945404	3	4	62	1	0	0	0	0	1	0	0	0	11381	768	27	1	202	1	P2RY2	11	72945404	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	5006807	72945404	62061112	852	12843										
P2RY2	5029	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	72945486	72945486	+	Silent	SNP	C	C	A													0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ctgctggtctattactacgcCcgcggcgaccactggccctt					novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	P2RY2-503	NM_176071	exon3	c.C282A	p.A94A	CTACGCCCGCGGC	.	151	75	107	0	.	12	12	0	0	0	A	72945486	C	A	72945486	2	1	62	1	0	0	0	0	0	0	0	1	11381	610	22	3		3	P2RY2	11	72945486	Silent	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	82	72945486	62061030	853	12844	143	3								
P2RY2	5029	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	72945487	72945487	+	Missense_Mutation	SNP	C	C	T													0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	tgctggtctattactacgccCgcggcgaccactggcccttc					novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	P2RY2-503	NM_176071	exon3	c.C283T	p.R95C	TACGCCCGCGGCG	.	150	74	107	0	.	12	12	0	0	0	T	72945487	C	T	72945487	3	4	62	1	0	0	0	0	1	0	0	0	11381	652	23	1	285	1	P2RY2	11	72945487	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	1	72945487	62061029	854	12845	143	3								
P2RY2	5029	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	72945489	72945489	+	Silent	SNP	C	C	T													0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ctggtctattactacgcccgCggcgaccactggcccttcag					novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	P2RY2-503	NM_176071	exon3	c.C285T	p.R95R	CGCCCGCGGCGAC	.	150	72	105	0	.	13	13	0	0	0	T	72945489	C	T	72945489	2	4	62	1	0	0	0	0	0	0	0	1	11381	755	27	1		1	P2RY2	11	72945489	Silent	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	2	72945489	62061027	855	12846	143	3								
C11orf30	56946	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	76169377	76169377	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	cataatgcatctcttccagtGcctgcagaaacaggaagcaa	8	11	1	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	C11orf30-232	NM_020193	exon5	c.G396A	p.V132V	TCCAGTGCCTGCA	.	60	43	101	0	.	2	0	2	0	0	A	76169377	G	A	76169377	2	1	62	1	0	0	0	0	0	0	0	1	1640	1306	46	3		3	C11orf30	11	76169377	Silent	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	3223888	76169377	58837139	856	12847										
B3GNT6	192134	hgsc.bcm.edu	37	chr11	76751543	76751604	+	In_Frame_Del	DEL	TGGAGCGCGCCGGCCTGGCGCCCAGCGGCCACGAGGGCATCCTGGCCCTTCGGCGTGCAGCT	TGGAGCGCGCCGGCCTGGCGCCCAGCGGCCACGAGGGCATCCTGGCCCTTCGGCGTGCAGCT	-													0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gcctacatgggcatgtgtctTggagcgcgccggcctggcgc					novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	TGGAGCGCGCCGGCCTGGCGCCCAGCGGCCACGAGGGCATCCTGGCCCTTCGGCGTGCAGCT	TGGAGCGCGCCGGCCTGGCGCCCAGCGGCCACGAGGGCATCCTGGCCCTTCGGCGTGCAGCT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	.	NM_138706	exon3	c.947_1006del	p.316_336del	GTGTCTTGGAGCG	.	26	0	0	0	.	0	0	0	0	0	-	76751604	TGGAGCGCGCCGGCCTGGCGCCCAGCGGCCACGAGGGCATCCTGGCCCTTCGGCGTGCAGCT	-	76751543	7	5	62	1	0	1	0	1	0	0	0	0	1262	1799	63	0	950	0	B3GNT6	11	76751543	In_Frame_Del	DEL	TGGAGCGCGCCGGCCTGGCGCCCAGCGGCCACGAGGGCATCCTGGCCCTTCGGCGTGCAGCT	TCGA-PK-A5HB-01A-11D-A29I-10	582166	76751543	58254973	857	12848										
C11orf54	28970	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	93488407	93488407	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	tattcagacagaaagtgaacAcaagcctcctgtaaatggaa	8	8	1	3	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	C11orf54-90	NM_014039	exon6	c.A362G	p.H121R	GTGAACACAAGCC	.	72	53	98	0	.	12	0	12	0	0	G	93488407	A	G	93488407	3	3	62	1	0	0	0	0	1	0	0	0	1653	159	6	4	380	4	C11orf54	11	93488407	Missense_Mutation	SNP	A	TCGA-PK-A5HB-01A-11D-A29I-10	16736864	93488407	41518109	858	12849										
GPR83	10888	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	94134121	94134121	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ccgagtgcattcgctggttcTtgaagatgacatgacagacc	11	10	1	5	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	GPR83-92	NM_016540	exon1	c.A293G	p.K98R	TGGTTCTTGAAGA	.	111	90	177	0	.	0	0	0	0	0	C	94134121	T	C	94134121	3	2	62	1	0	0	0	0	1	0	0	0	6733	1609	56	4	994	4	GPR83	11	94134121	Missense_Mutation	SNP	T	TCGA-PK-A5HB-01A-11D-A29I-10	645714	94134121	40872395	859	12850										
PIH1D2	120379	broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr11	111943748	111943748	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	cctggtctgtagacaaagctGtggttctggggcagcacaga	14	9	2	2	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PIH1D2-69	NM_001082619	exon2	c.C151A	p.Q51K	AAAGCTGTGGTTC	.	22	16	36	0	.	0	0	0	0	0	T	111943748	G	T	111943748	3	4	62	1	0	0	0	0	1	0	0	0	11936	1386	48	3	874	3	PIH1D2	11	111943748	Missense_Mutation	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	17809627	111943748	23062768	860	12851										
C11orf57	55216	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr11	111953575	111953578	+	Frame_Shift_Del	DEL	AGAG	AGAG	-													0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	taagaaaaccaaaaggaaaaAgagagagaaaaaagcccata					novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	AGAG	AGAG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	C11orf57-155	NM_001082969	exon6	c.761_764del	p.254_255del	GGAAAAAGAGAGA	.	31	23	41	0	.	0	0	0	0	0	-	111953578	AGAG	-	111953575	7	5	62	1	0	1	0	1	0	0	0	0	1654	72	3	0	779	0	C11orf57	11	111953575	Frame_Shift_Del	DEL	AGAG	TCGA-PK-A5HB-01A-11D-A29I-10	9827	111953575	23052941	861	12852										
SDHD	6392	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	111957633	111957633	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ttgagccctcaggaacgagaTggcggttctctggaggctga	15	9	2	3	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SDHD-226	NM_003002	exon1	c.G2A	p.C1Y	ACGAGATGGCGGT	.	114	85	189	0	.	38	4	34	0	0	A	111957633	T	A	111957633	3	1	62	1	0	0	0	0	1	0	0	0	14002	1464	51	5	4	5	SDHD	11	111957633	Missense_Mutation	SNP	T	TCGA-PK-A5HB-01A-11D-A29I-10	4058	111957633	23048883	862	12853										
RNF214	257160	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	117153198	117153198	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ctgaccatggaggaacttatCcagttggttgctgcacgact	11	10	0	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	RNF214-90	NM_207343	exon12	c.C1791G	p.I597M	ACTTATCCAGTTG	.	83	60	152	0	.	20	2	18	0	0	G	117153198	C	G	117153198	3	3	62	1	0	0	0	0	1	0	0	0	13513	845	30	3	1833	3	RNF214	11	117153198	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	5195565	117153198	17853318	863	12854										
POU2F3	25833	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	120180235	120180235	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	tgcaaccgacgccaaaaggaGaagcgaatcaactgccctgt	10	12	1	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	POU2F3-92	NM_001244682	exon10	c.G1014A	p.E338E	AAAGGAGAAGCGA	.	110	69	158	0	.	0	0	0	0	0	A	120180235	G	A	120180235	2	1	62	1	0	0	0	0	0	0	0	1	12302	933	33	3		3	POU2F3	11	120180235	Silent	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	3027037	120180235	14826281	864	12855										
GRIK4	2900	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	120531058	120531058	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	tctcggcgcctttggtgctgCttcctgcgtggctcgtgatg	14	12	1	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	GRIK4-92	NM_014619	exon1	c.C31T	p.L11F	GTGCTGCTTCCTG	.	39	30	60	0	.	5	1	4	0	0	T	120531058	C	T	120531058	3	4	62	1	0	0	0	0	1	0	0	0	6797	797	28	3	33	3	GRIK4	11	120531058	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	350823	120531058	14475458	865	12856										
TECTA	7007	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	121016701	121016701	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	accttcttctataagaactgCctgtttgactcttgcatcga	6	11	3	2	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TECTA-225	NM_005422	exon11	c.C3981T	p.C1327C	GAACTGCCTGTTT	.	64	38	96	0	.	1	0	1	0	0	T	121016701	C	T	121016701	2	4	62	1	0	0	0	0	0	0	0	1	15784	747	26	3		3	TECTA	11	121016701	Silent	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	485643	121016701	13989815	866	12857										
NFRKB	4798	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	129754659	129754659	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	cctgcagttttcatatccgtGgttgaaagtgtgggcaccac	11	10	1	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	NFRKB-93	NM_006165	exon5	c.C798G	p.T266T	ATCCGTGGTTGAA	.	48	36	80	0	.	0	0	0	0	0	C	129754659	G	C	129754659	2	2	62	1	0	0	0	0	0	0	0	1	10413	1335	47	3		3	NFRKB	11	129754659	Silent	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	8737958	129754659	5251857	867	12858										
NCAPD3	23310	broad.mit.edu;bcgsc.ca	37	chr11	134048719	134048719	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	tgatttcaaatgccttacagTggtcagcatcagcagacgaa	9	9	3	2	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	NCAPD3-229	NM_015261	exon21	c.A2672G	p.H891R	TTACAGTGGTCAG	.	123	8	170	1	.	0	0	0	0	0	C	134048719	T	C	134048719	3	2	62	1	0	0	0	0	1	0	0	0	10235	1696	59	4	1884	4	NCAPD3	11	134048719	Missense_Mutation	SNP	T	TCGA-PK-A5HB-01A-11D-A29I-10	4294060	134048719	957797	868	12859										
GLB1L3	112937	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	134147638	134147638	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	tctggagctgaagaatcgatCtgtgggacttggaactgaaa	13	6	2	3	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	GLB1L3-69	NM_001080407	exon3	c.C194T	p.S65F	ATCGATCTGTGGG	.	59	47	107	0	.	0	0	0	0	0	T	134147638	C	T	134147638	3	4	62	1	0	0	0	0	1	0	0	0	6450	913	32	3	204	3	GLB1L3	11	134147638	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	98919	134147638	858878	869	12860										
GLB1L2	89944	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr11	134240273	134240273	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	tgtacctgtctctgtgggacGccctcaagtacctgggggag	14	11	2	0	rs202239114		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	GLB1L2-25	NM_138342	exon12	c.G1195A	p.A399T	TGGGACGCCCTCA	.	102	81	130	0	G|0.999;A|0.001	0	0	0	0	0	A	134240273	G	A	134240273	3	1	62	1	0	0	0	0	1	0	0	0	6449	1087	38	1	1241	1	GLB1L2	11	134240273	Missense_Mutation	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	92635	134240273	766243	870	12861										
KDM5A	5927	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	431710	431710	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	cctatcctcagcatcttccaGcattactcgcaattcaatca	3	15	4	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	KDM5A-227	NM_001042603	exon17	c.C2299T	p.L767L	CTTCCAGCATTAC	.	11	11	22	0	.	5	0	5	0	0	A	431710	G	A	431710	2	1	62	1	0	0	0	0	0	0	0	1	8154	962	34	3		3	KDM5A	12	431710	Silent	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10		431710	133420185	871	12862										
FGF23	8074	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	4479600	4479600	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ccctgaccacccctaatgggTcactggccatcgggctgttg	11	15	1	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	FGF23-660	NM_020638	exon3	c.A665G	p.D222G	AATGGGTCACTGG	.	85	69	79	0	.	0	0	0	0	0	C	4479600	T	C	4479600	3	2	62	1	0	0	0	0	1	0	0	0	5871	1667	58	4	94	4	FGF23	12	4479600	Missense_Mutation	SNP	T	TCGA-PK-A5HB-01A-11D-A29I-10	4047890	4479600	129372295	872	12863										
VAMP1	6843	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	6575152	6575152	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	accttgtccacgttcacacgTatgatgtccaccacctgagg	8	14	1	2	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	VAMP1-90	NM_014231	exon3	c.A144G	p.I48M	CACACGTATGATG	.	61	51	86	1	.	5	0	5	0	0	C	6575152	T	C	6575152	3	2	62	1	0	0	0	0	1	0	0	0	17150	1628	57	4	253	4	VAMP1	12	6575152	Missense_Mutation	SNP	T	TCGA-PK-A5HB-01A-11D-A29I-10	2095552	6575152	127276743	873	12864										
NCAPD2	9918	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	6626132	6626132	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	tacaagcccatggccatgatGtcaactcctttgtgcggagc	10	12	1	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	NCAPD2-660	NM_014865	exon10	c.G1126C	p.V376L	CATGATGTCAACT	.	151	116	203	2	.	21	3	18	0	0	C	6626132	G	C	6626132	3	2	62	1	0	0	0	0	1	0	0	0	10234	1377	48	3	1160	3	NCAPD2	12	6626132	Missense_Mutation	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	50980	6626132	127225763	874	12865										
GNB3	2784	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	6954905	6954905	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	tccctcagtggccgcctactAttcgctggctacgacgactt	9	15	1	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	GNB3-227	NM_002075	exon10	c.A855T	p.L285L	CCTACTATTCGCT	.	125	95	134	0	.	2	0	2	0	0	T	6954905	A	T	6954905	2	4	62	1	0	0	0	0	0	0	0	1	6539	436	16	5		5	GNB3	12	6954905	Silent	SNP	A	TCGA-PK-A5HB-01A-11D-A29I-10	328773	6954905	126896990	875	12866										
CLEC4C	170482	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	7898983	7898983	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	agatggatacgactgccatgGaccagaccttcaactggaac	10	11	1	2	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CLEC4C-93	NM_130441	exon3	c.C68T	p.S23F	GCCATGGACCAGA	.	33	26	88	1	.	0	0	0	0	0	A	7898983	G	A	7898983	3	1	62	1	0	0	0	0	1	0	0	0	3519	1174	41	3	593	3	CLEC4C	12	7898983	Missense_Mutation	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	944078	7898983	125952912	876	12867										
RIMKLB	57494	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	8926136	8926136	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	agcagactatgccgcctcccTtctaccctctggccggctca	8	18	3	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	.	NM_020734	exon7	c.T917C	p.L306P	CCTCCCTTCTACC	.	96	75	118	0	.	2	1	1	0	0	C	8926136	T	C	8926136	3	2	62	1	0	0	0	0	1	0	0	0	13401	1609	56	4	935	4	RIMKLB	12	8926136	Missense_Mutation	SNP	T	TCGA-PK-A5HB-01A-11D-A29I-10	1027153	8926136	124925759	877	12868										
CSDA	8531	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	10856704	10856704	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gaaccggtccctgaagttgtGctccctctgggactccatcc	10	15	1	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CSDA-586	NM_003651	exon7	c.C824T	p.A275V	AGTTGTGCTCCCT	.	96	65	123	0	.	93	13	78	1	1	A	10856704	G	A	10856704	3	1	62	1	0	0	0	0	1	0	0	0	3933	1319	46	3	306	3	CSDA	12	10856704	Missense_Mutation	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	1930568	10856704	122995191	878	12869										
TAS2R19	259294	bcgsc.ca	37	chr12	11174416	11174416	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gtttgctctgctgtgtcctaAgattccaagttgatgtgatt	10	7	1	3	rs112900131	byfrequency	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TAS2R19-91	NM_176888	exon1	c.T755C	p.L252P	GTCCTAAGATTCC	.	151	21	223	7	A|0.997;G|0.003	0	0	0	0	0	G	11174416	A	G	11174416	3	3	62	1	0	0	0	0	1	0	0	0	15607	72	3	4	147	4	TAS2R19	12	11174416	Missense_Mutation	SNP	A	TCGA-PK-A5HB-01A-11D-A29I-10	317712	11174416	122677479	879	12870										
MANSC1	54682	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	12483292	12483292	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ttaggttggagatttctgtaAacggtatggtttctaagctg	12	4	2	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	MANSC1-90	NM_018050	exon4	c.T965G	p.F322C	TCTGTAAACGGTA	.	79	63	144	0	.	6	6	0	0	0	C	12483292	A	C	12483292	3	2	62	1	0	0	0	0	1	0	0	0	9252	14	1	5	334	5	MANSC1	12	12483292	Missense_Mutation	SNP	A	TCGA-PK-A5HB-01A-11D-A29I-10	1308876	12483292	121368603	880	12871										
LOH12CR1	118426	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	12510415	12510415	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gagcagagctccgaggccgaGagccgacccaacgatctgaa	13	13	1	3	rs151180790	alternate_allele	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	LOH12CR1-91	NM_058169	exon1	c.G30C	p.E10D	GGCCGAGAGCCGA	.	161	107	215	1	G|1.000;A|0.000	6	0	6	0	0	C	12510415	G	C	12510415	3	2	62	1	0	0	0	0	1	0	0	0	8918	933	33	3	32	3	LOH12CR1	12	12510415	Missense_Mutation	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	27123	12510415	121341480	881	12872										
EMP1	2012	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	13367530	13367530	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	atgcgaatcgtgatggaacgCagtatcaccacggctattcc	10	11	1	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	EMP1-90	NM_001423	exon5	c.C379T	p.Q127X	GGAACGCAGTATC	.	108	85	138	0	.	11	11	0	0	0	T	13367530	C	T	13367530	4	4	62	1	0	0	0	0	0	1	0	0	5114	711	25	3	393	3	EMP1	12	13367530	Nonsense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	857115	13367530	120484365	882	12873										
ABCC9	10060	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	22069967	22069967	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	cgcaggtttgatatgtccaaGccagactgacagtacttaac	9	10	0	3	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ABCC9-96	NM_005691	exon4	c.C477T	p.G159G	GTCCAAGCCAGAC	.	63	45	92	1	.	5	5	0	0	0	A	22069967	G	A	22069967	2	1	62	1	0	0	0	0	0	0	0	1	59	958	34	3		3	ABCC9	12	22069967	Silent	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	8702437	22069967	111781928	883	12874										
SOX5	6660	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	23818387	23818387	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	acagtacttactacatccagCcttatagctgaagcctggag	8	11	0	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SOX5-655	NM_006940	exon7	c.G922A	p.A308T	ATCCAGCCTTATA	.	42	33	66	0	.	0	0	0	0	0	T	23818387	C	T	23818387	3	4	62	1	0	0	0	0	1	0	0	0	14989	739	26	3	1415	3	SOX5	12	23818387	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	1748420	23818387	110033508	884	12875										
FAR2	55711	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr12	29446360	29446360	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ggagcttctctcctgtacaaAcataatatttcactgtgcag	7	10	2	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	FAR2-90	NM_018099	exon3	c.A317G	p.N106S	GTACAAACATAAT	.	80	34	72	0	.	0	0	0	0	0	G	29446360	A	G	29446360	3	3	62	1	0	0	0	0	1	0	0	0	5694	43	2	4	323	4	FAR2	12	29446360	Missense_Mutation	SNP	A	TCGA-PK-A5HB-01A-11D-A29I-10	5627973	29446360	104405535	885	12876										
PKP2	5318	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	32996207	32996207	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ttacaggcgtgagccaccgcGcccggccagccattcctact	10	17	0	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PKP2-92	NM_004572	exon6	c.C1419T	p.G473G	CACCGCGCCCGGC	.	44	19	35	0	.	0	0	0	0	0	A	32996207	G	A	32996207	2	1	62	1	0	0	0	0	0	0	0	1	12014	1074	38	1		1	PKP2	12	32996207	Silent	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	3549847	32996207	100855688	886	12877										
TMEM117	84216	bcgsc.ca	37	chr12	44238546	44238546	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ctttaacttcttaatatttgCggaggacccagtttctcata	6	9	2	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TMEM117-90	NM_032256	exon2	c.C92T	p.A31V	TATTTGCGGAGGA	.	119	40	96	3	.	4	3	1	0	0	T	44238546	C	T	44238546	3	4	62	1	0	0	0	0	1	0	0	0	16068	768	27	1	94	1	TMEM117	12	44238546	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	11242339	44238546	89613349	887	12878										
SLC38A1	81539	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	46591521	46591521	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	acccaaattctttgagttccTttatctccatcctggtctgt	5	12	3	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SLC38A1-518	NM_030674	exon16	c.A1344T	p.K448N	AGTTCCTTTATCT	.	82	41	79	0	.	1	0	1	0	0	A	46591521	T	A	46591521	3	1	62	1	0	0	0	0	1	0	0	0	14636	1606	56	5	127	5	SLC38A1	12	46591521	Missense_Mutation	SNP	T	TCGA-PK-A5HB-01A-11D-A29I-10	2352975	46591521	87260374	888	12879										
SLC38A2	54407	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	46756130	46756130	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ttgatatagaaggcagaaggAagaataaaaatcaacataga	9	3	1	5	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SLC38A2-226	NM_018976	exon15	c.T1359A	p.L453L	AGAAGGAAGAATA	.	125	45	103	0	.	24	14	10	0	0	T	46756130	A	T	46756130	2	4	62	1	0	0	0	0	0	0	0	1	14639	233	9	5		5	SLC38A2	12	46756130	Silent	SNP	A	TCGA-PK-A5HB-01A-11D-A29I-10	164609	46756130	87095765	889	12880										
COL2A1	1280	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	48383041	48383041	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ggagcaccagggaagccaggAccaccagcaggaccgacagg	15	13	0	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	COL2A1-92	NM_001844	exon18	c.T1092A	p.G364G	GCCAGGACCACCA	.	127	46	105	0	.	0	0	0	0	0	T	48383041	A	T	48383041	2	4	62	1	0	0	0	0	0	0	0	1	3693	262	10	5		5	COL2A1	12	48383041	Silent	SNP	A	TCGA-PK-A5HB-01A-11D-A29I-10	1626911	48383041	85468854	890	12881										
COL2A1	1280	hgsc.bcm.edu;bcgsc.ca	37	chr12	48391429	48391429	+	Frame_Shift_Del	DEL	G	G	-													0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	caggggggccgggaggaccaGgggggccaggatttccaggg					novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	COL2A1-92	NM_001844	exon7	c.491delC	p.P164fs	GGACCAGGGGGGC	.	146	57	96	2	.	0	0	0	0	0	-	48391429	G	-	48391429	7	5	62	1	0	1	0	1	0	0	0	0	3693	1000	35	0	4164	0	COL2A1	12	48391429	Frame_Shift_Del	DEL	G	TCGA-PK-A5HB-01A-11D-A29I-10	8388	48391429	85460466	891	12882										
ADCY6	112	hgsc.bcm.edu	37	chr12	49177012	49177012	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ggccgcccctccggatgaagGcgtcatcctgccaggggcac	14	16	1	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ADCY6-90	NM_020983	exon2	c.C206A	p.A69D	ATGAAGGCGTCAT	.	55	22	5	0	.	0	0	0	0	0	T	49177012	G	T	49177012	3	4	62	1	0	0	0	0	1	0	0	0	298	1203	42	3	3384	3	ADCY6	12	49177012	Missense_Mutation	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	785583	49177012	84674883	892	12883										
WNT1	7471	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr12	49375164	49375164	+	Frame_Shift_Del	DEL	C	C	-													0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	cccggcccacaaaccgccctCcccccacgacctcgtctact					novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	WNT1-1083	NM_005430	exon4	c.854delC	p.S285fs	CGCCCTCCCCCCA	.	133	58	34	0	.	0	0	0	0	0	-	49375164	C	-	49375164	7	5	62	1	0	1	0	1	0	0	0	0	17419	855	30	0	868	0	WNT1	12	49375164	Frame_Shift_Del	DEL	C	TCGA-PK-A5HB-01A-11D-A29I-10	198152	49375164	84476731	893	12884										
MLL2	8085	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	49416426	49416426	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	cacctcgttccgaatgatggTgccaatgtactcgataacca	8	12	0	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	MLL2-612	NM_003482	exon51	c.A16285G	p.T5429A	TGATGGTGCCAAT	.	297	34	236	0	.	43	39	3	1	0	C	49416426	T	C	49416426	3	2	62	1	0	0	0	0	1	0	0	0	9649	1696	59	4	344	4	MLL2	12	49416426	Missense_Mutation	SNP	T	TCGA-PK-A5HB-01A-11D-A29I-10	41262	49416426	84435469	894	12885										
MLL2	8085	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	49437705	49437705	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ctcttcttgcgccctcgccgCtgttgcttcttcttctcatc	6	17	5	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	MLL2-612	NM_003482	exon22	c.G5265A	p.Q1755Q	TCGCCGCTGTTGC	.	212	92	161	0	.	4	2	2	0	0	T	49437705	C	T	49437705	2	4	62	1	0	0	0	0	0	0	0	1	9649	796	28	3		3	MLL2	12	49437705	Silent	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	21279	49437705	84414190	895	12886										
LMBR1L	55716	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	49491821	49491821	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	aaggctgcgttgtagaggaaCacaatgtagaaattgcccag	12	7	0	2	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	LMBR1L-227	NM_018113	exon16	c.G1308A	p.V436V	GAGGAACACAATG	.	150	48	95	0	.	16	6	10	0	0	T	49491821	C	T	49491821	2	4	62	1	0	0	0	0	0	0	0	1	8865	465	17	3		3	LMBR1L	12	49491821	Silent	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	54116	49491821	84360074	896	12887										
LARP4	113251	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	50867901	50867901	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gccatcgagggcaagtactgCttcaccatgtaataataaca	8	10	1	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	LARP4-91	NM_052879	exon15	c.C1787T	p.A596V	GTACTGCTTCACC	.	205	81	149	0	.	15	7	8	0	0	T	50867901	C	T	50867901	3	4	62	1	0	0	0	0	1	0	0	0	8652	797	28	3	1849	3	LARP4	12	50867901	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	1376080	50867901	82983994	897	12888										
KRT84	3890	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	52777465	52777465	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	cagcacctccaactgcctccGcaggttggtgatgtagctct	10	14	1	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	KRT84-91	NM_033045	exon2	c.C664T	p.R222W	GCCTCCGCAGGTT	.	92	50	94	1	.	0	0	0	0	0	A	52777465	G	A	52777465	3	1	62	1	0	0	0	0	1	0	0	0	8519	1086	38	1	1170	1	KRT84	12	52777465	Missense_Mutation	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	1909564	52777465	81074430	898	12889										
ESPL1	9700	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	53673526	53673526	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	tgctgaccagcccatgcaggCtctggaggtcctcctgctgc	12	15	1	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ESPL1-228	NM_012291	exon12	c.C2375T	p.A792V	TGCAGGCTCTGGA	.	71	28	37	0	.	0	0	0	0	0	T	53673526	C	T	53673526	3	4	62	1	0	0	0	0	1	0	0	0	5266	797	28	3	2417	3	ESPL1	12	53673526	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	896061	53673526	80178369	899	12890										
OR9K2	441639	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	55523992	55523992	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ggcggccatggcttatgaccGctttattgccatctgcaacc	10	13	1	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	OR9K2-69	NM_001005243	exon1	c.G440A	p.R147H	ATGACCGCTTTAT	.	86	32	108	0	.	0	0	0	0	0	A	55523992	G	A	55523992	3	1	62	1	0	0	0	0	1	0	0	0	11283	1087	38	1	442	1	OR9K2	12	55523992	Missense_Mutation	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	1850466	55523992	78327903	900	12891										
SUOX	6821	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	56397807	56397807	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	aaaactacatcacacccaacCctatcttcttcacccggaac	2	17	4	0	rs76442086		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SUOX-90	NM_000456	exon6	c.C634T	p.P212S	CCCAACCCTATCT	.	241	94	209	0	.	26	14	12	0	0	T	56397807	C	T	56397807	3	4	62	1	0	0	0	0	1	0	0	0	15432	623	22	3	644	3	SUOX	12	56397807	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	873815	56397807	77454088	901	12892										
ANKRD52	283373	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr12	56638929	56638930	+	Frame_Shift_Ins	INS	-	-	C													0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ggggtttccttccaggtacgINSaaaacgggctgtgttcaagt					novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ANKRD52-70	NM_173595	exon22	c.2450_2451insG	p.S817fs	AGGTACGAAAACG	.	204	81	154	0	.	0	0	0	0	0	C	56638930	-	C	56638929	7	5	62	1	0	1	1	0	0	0	0	0	678	1059	37	0	808	0	ANKRD52	12	56638929	Frame_Shift_Ins	INS	-	TCGA-PK-A5HB-01A-11D-A29I-10	241122	56638929	77212966	902	12893	144	2								
ANKRD52	283373	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	chr12	56638934	56638934	+	Silent	SNP	C	C	G													0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	tttccttccaggtacgaaaaCgggctgtgttcaagtaacaa					novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ANKRD52-70	NM_173595	exon22	c.G2445C	p.P815P	CGAAAACGGGCTG	.	197	85	146	0	.	5	5	0	0	0	G	56638934	C	G	56638934	2	3	62	1	0	0	0	0	0	0	0	1	678	523	19	2		2	ANKRD52	12	56638934	Silent	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	5	56638934	77212961	903	12894	144	2								
CS	1431	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	56676360	56676360	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	acatgggaaggcagagctgcCctctttgcccactcttttga	10	12	2	2	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CS-226	NM_004077	exon6	c.G432C	p.R144S	AGCTGCCCTCTTT	.	249	93	205	0	.	347	187	160	0	0	G	56676360	C	G	56676360	3	3	62	1	0	0	0	0	1	0	0	0	3930	622	22	3	992	3	CS	12	56676360	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	37426	56676360	77175535	904	12895										
BAZ2A	11176	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	56994876	56994876	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gtatccaccaccagcctgagCacatctctgtgagcagatga	9	13	1	4	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	BAZ2A-22	NM_013449	exon22	c.G4307A	p.C1436Y	CCTGAGCACATCT	.	213	99	159	0	.	0	0	0	0	0	T	56994876	C	T	56994876	3	4	62	1	0	0	0	0	1	0	0	0	1332	710	25	3	1442	3	BAZ2A	12	56994876	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	318516	56994876	76857019	905	12896										
NACA	4666	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	57113354	57113354	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gggagccaccccggcagggtCagcactttccaaaggaaatg	13	12	1	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	NACA-254	NM_001113203	exon4	c.G1831A	p.D611N	CAGGGTCAGCACT	.	60	32	48	0	.	1	1	0	0	0	T	57113354	C	T	57113354	3	4	62	1	0	0	0	0	1	0	0	0	10161	826	29	3	4304	3	NACA	12	57113354	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	118478	57113354	76738541	906	12897										
HSD17B6	8630	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	57167811	57167811	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gaggcttgagagtgctggctGcgtgtctgacggagaagggg	20	6	1	3	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	HSD17B6-92	NM_003725	exon2	c.G175A	p.A59T	CTGGCTGCGTGTC	.	220	102	165	0	.	0	0	0	0	0	A	57167811	G	A	57167811	3	1	62	1	0	0	0	0	1	0	0	0	7408	1319	46	3	177	3	HSD17B6	12	57167811	Missense_Mutation	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	54457	57167811	76684084	907	12898										
ZBTB39	9880	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	57397418	57397418	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ggatcgttggggtggacaatGatgttgttctcaaatattcc	12	6	1	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ZBTB39-135	NM_014830	exon2	c.C1284T	p.I428I	GACAATGATGTTG	.	94	47	72	0	.	2	2	0	0	0	A	57397418	G	A	57397418	2	1	62	1	0	0	0	0	0	0	0	1	17577	1280	45	3		3	ZBTB39	12	57397418	Silent	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	229607	57397418	76454477	908	12899										
STAT6	6778	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	57493582	57493582	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ggatgacatgggcaatggtgAtgcccccaatctctgagtcg	13	10	1	3	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	STAT6-849	NM_001178079	exon15	c.T1712C	p.I571T	ATGGTGATGCCCC	.	279	136	191	0	.	135	64	71	0	0	G	57493582	A	G	57493582	3	3	62	1	0	0	0	0	1	0	0	0	15307	333	12	4	863	4	STAT6	12	57493582	Missense_Mutation	SNP	A	TCGA-PK-A5HB-01A-11D-A29I-10	96164	57493582	76358313	909	12900										
LRP1	4035	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	57560791	57560791	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ctggacgtgtgatctggatgAcgactgtggggaccgctctg	16	9	2	2	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	LRP1-596	NM_002332	exon18	c.A2876G	p.D959G	TGGATGACGACTG	.	163	72	102	1	.	12	4	8	0	0	G	57560791	A	G	57560791	3	3	62	1	0	0	0	0	1	0	0	0	8978	275	10	4	2946	4	LRP1	12	57560791	Missense_Mutation	SNP	A	TCGA-PK-A5HB-01A-11D-A29I-10	67209	57560791	76291104	910	12901										
LRP1	4035	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	57579466	57579466	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gctacctgctctactcagagCgcaccattctcaagagtatc	7	14	3	2	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	LRP1-596	NM_002332	exon41	c.C6616T	p.R2206C	TCAGAGCGCACCA	.	137	70	50	0	.	23	13	10	0	0	T	57579466	C	T	57579466	3	4	62	1	0	0	0	0	1	0	0	0	8978	768	27	1	6778	1	LRP1	12	57579466	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	18675	57579466	76272429	911	12902										
USP15	9958	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	62783220	62783220	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ttgttttttagtacaaagtgGttgtccccaaaattggaaac	8	6	0	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	USP15-1084	NM_001252078	exon12	c.G1483A	p.V495I	AAAGTGGTTGTCC	.	32	15	30	0	.	1	0	1	0	0	A	62783220	G	A	62783220	3	1	62	1	0	0	0	0	1	0	0	0	17084	1261	44	3	1438	3	USP15	12	62783220	Missense_Mutation	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	5203754	62783220	71068675	912	12903										
AVPR1A	552	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	63544037	63544037	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ggccttggtgacattgttcaCctcgatcatggagaagacga	12	9	2	3	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	AVPR1A-946	NM_000706	exon1	c.G580A	p.V194M	TGTTCACCTCGAT	.	249	109	169	2	.	2	2	0	0	0	T	63544037	C	T	63544037	3	4	62	1	0	0	0	0	1	0	0	0	1232	507	18	3	684	3	AVPR1A	12	63544037	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	760817	63544037	70307858	913	12904										
WIF1	11197	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	65471560	65471560	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ggcactgttcccagcagaggGacattgacggttggatctgc	14	10	1	2	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	WIF1-1110	NM_007191	exon3	c.C363T	p.V121V	CAGAGGGACATTG	.	174	73	151	1	.	0	0	0	0	0	A	65471560	G	A	65471560	2	1	62	1	0	0	0	0	0	0	0	1	17404	1161	41	3		3	WIF1	12	65471560	Silent	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	1927523	65471560	68380335	914	12905										
MSRB3	253827	broad.mit.edu;bcgsc.ca	37	chr12	65857056	65857056	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	cagtggcaccgccgagggagGcagtggggtcgccagcccgg	19	13	0	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	MSRB3-515	NM_198080	exon6	c.G533A	p.G178D	AGGGAGGCAGTGG	.	117	56	95	2	.	1	1	0	0	0	A	65857056	G	A	65857056	3	1	62	1	0	0	0	0	1	0	0	0	9917	1203	42	3	635	3	MSRB3	12	65857056	Missense_Mutation	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	385496	65857056	67994839	915	12906										
GRIP1	23426	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr12	66788074	66788074	+	Frame_Shift_Del	DEL	C	C	-													0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gaaattgtgatgccaaggggCcccccgtagcgtttaagctc					novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	GRIP1-494	NM_001178074	exon16	c.1887delG	p.G629fs	AAGGGGCCCCCCG	.	74	29	62	0	.	0	0	0	0	0	-	66788074	C	-	66788074	7	5	62	1	0	1	0	1	0	0	0	0	6808	726	26	0	1379	0	GRIP1	12	66788074	Frame_Shift_Del	DEL	C	TCGA-PK-A5HB-01A-11D-A29I-10	931018	66788074	67063821	916	12907										
CAND1	55832	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	67696266	67696266	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	agatttaaagagcgtgaagaGaatgtaaaggcagatgtttt	12	2	0	5	rs144692083	alternate_allele	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CAND1-516	NM_018448	exon8	c.G1164A	p.E388E	TGAAGAGAATGTA	.	136	60	137	0	G|1.000;C|0.000	74	41	33	0	0	A	67696266	G	A	67696266	2	1	62	1	0	0	0	0	0	0	0	1	2621	933	33	3		3	CAND1	12	67696266	Silent	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	908192	67696266	66155629	917	12908										
DYRK2	8445	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	68051174	68051174	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ctgaacaagcaatgaagcaaTacatgcaaaaactcacagcc	6	11	1	2	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	DYRK2-861	NM_006482	exon3	c.T487A	p.Y163N	AAGCAATACATGC	.	82	40	63	0	.	15	7	8	0	0	A	68051174	T	A	68051174	3	1	62	1	0	0	0	0	1	0	0	0	4867	1406	49	5	497	5	DYRK2	12	68051174	Missense_Mutation	SNP	T	TCGA-PK-A5HB-01A-11D-A29I-10	354908	68051174	65800721	918	12909										
FRS2	10818	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	69968573	69968573	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	aaccctcagactccaaaaacGcctacaactccccttccaca	2	19	1	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	FRS2-658	NM_001042555	exon10	c.G1365A	p.T455T	AAAAACGCCTACA	.	180	71	146	1	.	28	9	18	1	0	A	69968573	G	A	69968573	2	1	62	1	0	0	0	0	0	0	0	1	6080	1074	38	1		1	FRS2	12	69968573	Silent	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	1917399	69968573	63883322	919	12910										
NAV3	89795	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	78334110	78334110	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gttcaacagatttacactgaCtgggccaaccactacctagc	7	13	1	2	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	NAV3-279	NM_014903	exon2	c.C255G	p.D85E	CACTGACTGGGCC	.	118	56	87	0	.	0	0	0	0	0	G	78334110	C	G	78334110	3	3	62	1	0	0	0	0	1	0	0	0	10213	564	20	3	261	3	NAV3	12	78334110	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	8365537	78334110	55517785	920	12911										
PPP1R12A	4659	hgsc.bcm.edu;broad.mit.edu	37	chr12	80201041	80201042	+	Frame_Shift_Ins	INS	-	-	T													0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	atccttcattaactgagctaINSttttttttaagatcatcttc					novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PPP1R12A-273	NM_001244990	exon13	c.1620_1621insA	p.N540fs	TGAGCTATTTTTT	.	28	12	16	0	.	0	0	0	0	0	T	80201042	-	T	80201041	7	5	62	1	0	1	1	0	0	0	0	0	12386	446	16	0	1528	0	PPP1R12A	12	80201041	Frame_Shift_Ins	INS	-	TCGA-PK-A5HB-01A-11D-A29I-10	1866931	80201041	53650854	921	12912										
NUDT4	11163	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr12	93793069	93793069	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gttgttccccagccaatggaAattctacagtcccttccctt	6	14	1	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	NUDT4-90	NM_199040	exon5	c.A460T	p.N154Y	AATGGAAATTCTA	.	313	38	230	0	.	90	90	0	0	0	T	93793069	A	T	93793069	3	4	62	1	0	0	0	0	1	0	0	0	10770	14	1	5	478	5	NUDT4	12	93793069	Missense_Mutation	SNP	A	TCGA-PK-A5HB-01A-11D-A29I-10	13592028	93793069	40058826	922	12913										
CCDC41	51134	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	94725525	94725525	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gtttctccttagcttgattgTacttttcttctctgtctgtg	7	9	4	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CCDC41-90	NM_016122	exon14	c.A1658G	p.Y553C	TGATTGTACTTTT	.	84	26	71	0	.	7	3	4	0	0	C	94725525	T	C	94725525	3	2	62	1	0	0	0	0	1	0	0	0	2819	1638	57	4	463	4	CCDC41	12	94725525	Missense_Mutation	SNP	T	TCGA-PK-A5HB-01A-11D-A29I-10	932456	94725525	39126370	923	12914										
NTN4	59277	broad.mit.edu	37	chr12	96077421	96077421	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	tgcaagggcagtcaccattgCtggggtcgcagaaggtcact	14	10	2	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	NTN4-92	NM_021229	exon6	c.G1247A	p.S416N	CCATTGCTGGGGT	.	185	6	130	0	.	29	29	0	0	0	T	96077421	C	T	96077421	3	4	62	1	0	0	0	0	1	0	0	0	10731	797	28	3	659	3	NTN4	12	96077421	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	1351896	96077421	37774474	924	12915										
AMDHD1	144193	hgsc.bcm.edu	37	chr12	96337183	96337183	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	cggcgcgaggcgacatggcaAgcggccacagcctcctgctg	15	15	0	0	rs7955450	byfrequency	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	AMDHD1-90	NM_152435	exon1	c.A7G	p.S3G	ATGGCAAGCGGCC	.	13	8	0	0	A|0.273;G|0.727	4	0	4	0	0	G	96337183	A	G	96337183	3	3	62	1	0	0	0	0	1	0	0	0	567	72	3	4	9	4	AMDHD1	12	96337183	Missense_Mutation	SNP	A	TCGA-PK-A5HB-01A-11D-A29I-10	259762	96337183	37514712	925	12916										
AMDHD1	144193	hgsc.bcm.edu	37	chr12	96337225	96337225	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	agaacgcgcagcaagtggtgCtggtgtgcgcccgcggcgag	18	11	0	1	rs1436121	byfrequency	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	AMDHD1-90	NM_152435	exon1	c.C49T	p.L17L	GTGGTGCTGGTGT	.	19	8	0	0	C|0.752;T|0.248	4	2	2	0	0	T	96337225	C	T	96337225	2	4	62	1	0	0	0	0	0	0	0	1	567	796	28	3		3	AMDHD1	12	96337225	Silent	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	42	96337225	37514670	926	12917										
APAF1	317	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	99061321	99061321	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	agaagataatcactcagtttCagagatatcaccagccgcat	7	10	4	3	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	APAF1-229	NM_181868	exon10	c.C1393T	p.Q465X	CAGTTTCAGAGAT	.	88	45	71	1	.	2	2	0	0	0	T	99061321	C	T	99061321	4	4	62	1	0	0	0	0	0	1	0	0	755	827	29	3	1427	3	APAF1	12	99061321	Nonsense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	2724096	99061321	34790574	927	12918										
CHST11	50515	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	105150884	105150884	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ggaccacgagctcatctactGctacgtgcccaaggtggcct	11	14	2	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CHST11-90	NM_018413	exon3	c.G362A	p.C121Y	TCTACTGCTACGT	.	255	103	176	1	.	37	17	19	0	1	A	105150884	G	A	105150884	3	1	62	1	0	0	0	0	1	0	0	0	3405	1319	46	3	372	3	CHST11	12	105150884	Missense_Mutation	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	6089563	105150884	28701011	928	12919										
UBE3B	89910	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	109959270	109959270	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ccagtggggatgagaggctgTacccctcacccacatcctac	10	15	1	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	UBE3B-660	NM_130466	exon21	c.T2278C	p.Y760H	AGGCTGTACCCCT	.	133	64	145	0	.	32	14	18	0	0	C	109959270	T	C	109959270	3	2	62	1	0	0	0	0	1	0	0	0	16918	1638	57	4	2352	4	UBE3B	12	109959270	Missense_Mutation	SNP	T	TCGA-PK-A5HB-01A-11D-A29I-10	4808386	109959270	23892625	929	12920										
MMAB	326625	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	109998890	109998890	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	cccggcagaaatgcagcgccGagctgatcttgcctcccgac	11	16	1	2	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	MMAB-90	NM_052845	exon7	c.C539T	p.S180L	AGCGCCGAGCTGA	.	117	57	92	0	.	39	24	15	0	0	A	109998890	G	A	109998890	3	1	62	1	0	0	0	0	1	0	0	0	9668	1059	37	1	225	1	MMAB	12	109998890	Missense_Mutation	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	39620	109998890	23853005	930	12921										
TRPV4	59341	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr12	110221440	110221440	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	cagtccctagagcggggcgtCatcagtcctccacttgcggg	13	14	2	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TRPV4-94	NM_021625	exon16	c.G2602A	p.D868N	GGGCGTCATCAGT	.	77	7	70	0	.	1	1	0	0	0	T	110221440	C	T	110221440	3	4	62	1	0	0	0	0	1	0	0	0	16636	826	29	3	17	3	TRPV4	12	110221440	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	222550	110221440	23630455	931	12922										
ACAD10	80724	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	112171864	112171864	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	cctgccatccagttttcccgTgctgagaggtaggaactgct	11	12	0	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ACAD10-92	NM_001136538	exon12	c.T1625C	p.V542A	TTCCCGTGCTGAG	.	98	36	69	0	.	0	0	0	0	0	C	112171864	T	C	112171864	3	2	62	1	0	0	0	0	1	0	0	0	108	1696	59	4	1667	4	ACAD10	12	112171864	Missense_Mutation	SNP	T	TCGA-PK-A5HB-01A-11D-A29I-10	1950424	112171864	21680031	932	12923										
DTX1	1840	bcgsc.ca	37	chr12	113496054	113496054	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	aatggtctgggcttcccaccGcagaacgtggcccgggtggt	15	12	1	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	DTX1-659	NM_004416	exon1	c.G57A	p.P19P	CCCACCGCAGAAC	.	324	142	208	3	.	0	0	0	0	0	A	113496054	G	A	113496054	2	1	62	1	0	0	0	0	0	0	0	1	4804	1074	38	1		1	DTX1	12	113496054	Silent	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	1324190	113496054	20355841	933	12924										
PLBD2	196463	broad.mit.edu	37	chr12	113812652	113812652	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gagctggccctgaacaagacCaagatcaaaccttctctggg	10	12	2	3	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PLBD2-68	NM_173542	exon5	c.C699A	p.T233T	CAAGACCAAGATC	.	85	6	57	0	.	513	512	1	0	0	A	113812652	C	A	113812652	2	1	62	1	0	0	0	0	0	0	0	1	12055	581	21	3		3	PLBD2	12	113812652	Silent	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	316598	113812652	20039243	934	12925										
RNFT2	84900	broad.mit.edu;bcgsc.ca	37	chr12	117273791	117273791	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gacatctgtggacgtgtgggCggagttaggaaagccctgaa	16	7	1	1	rs192187826	by1000genomes	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	.	NM_001109903	exon9	c.C1059T	p.G353G	TGTGGGCGGAGTT	.	165	8	116	0	C|0.999;T|0.000	2	2	0	0	0	T	117273791	C	T	117273791	2	4	62	1	0	0	0	0	0	0	0	1	13537	755	27	1		1	RNFT2	12	117273791	Silent	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	3461139	117273791	16578104	935	12926										
SRRM4	84530	broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr12	119554810	119554810	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ttccaagaaacacaagcgacGcaggtattgtcctttttctc	7	11	1	1	rs189389386		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SRRM4-2	NM_194286	exon4	c.G434A	p.R145H	AGCGACGCAGGTA	.	54	26	41	1	G|0.999;A|0.001	0	0	0	0	0	A	119554810	G	A	119554810	3	1	62	1	0	0	0	0	1	0	0	0	15208	1087	38	1	448	1	SRRM4	12	119554810	Missense_Mutation	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	2281019	119554810	14297085	936	12927										
KDM2B	84678	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	121868110	121868110	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	actaactcagtttttgcaggAgtttttcttctacttgccca	6	10	3	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	KDM2B-638	NM_032590	exon23	c.T3992C	p.L1331P	TGCAGGAGTTTTT	.	57	27	55	0	.	26	9	17	0	0	G	121868110	A	G	121868110	3	3	62	1	0	0	0	0	1	0	0	0	8146	304	11	4	74	4	KDM2B	12	121868110	Missense_Mutation	SNP	A	TCGA-PK-A5HB-01A-11D-A29I-10	2313300	121868110	11983785	937	12928										
VPS33A	65082	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr12	122717402	122717402	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	tcctcaaagtggggccctggGaggatgcggaggacctcctc	15	12	1	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	VPS33A-91	NM_022916	exon12	c.C1554T	p.L518L	CCCTGGGAGGATG	.	161	80	126	0	.	62	30	32	0	0	A	122717402	G	A	122717402	2	1	62	1	0	0	0	0	0	0	0	1	17239	1161	41	3		3	VPS33A	12	122717402	Silent	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	849292	122717402	11134493	938	12929										
ZCCHC8	55596	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	122958256	122958256	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	aaagagcttctggctgccccCattgctgatgtcacagtttg	10	11	2	2	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ZCCHC8-90	NM_017612	exon14	c.G1912A	p.G638R	TGCCCCCATTGCT	.	104	42	108	1	.	9	6	3	0	0	T	122958256	C	T	122958256	3	4	62	1	0	0	0	0	1	0	0	0	17631	594	21	3	215	3	ZCCHC8	12	122958256	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	240854	122958256	10893639	939	12930										
MPHOSPH9	10198	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr12	123679054	123679054	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ttagtcgaatgatggtattgTctttttctttactgcttgtt	8	5	2	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	MPHOSPH9-514	NM_022782	exon9	c.A1664G	p.D555G	GTATTGTCTTTTT	.	84	33	82	0	.	8	2	6	0	0	C	123679054	T	C	123679054	3	2	62	1	0	0	0	0	1	0	0	0	9756	1667	58	4	1479	4	MPHOSPH9	12	123679054	Missense_Mutation	SNP	T	TCGA-PK-A5HB-01A-11D-A29I-10	720798	123679054	10172841	940	12931										
DNAH10	196385	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	124409717	124409717	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	tggatcgggtctatcgggccGtgactgactatgtgactgta	14	8	1	3	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	DNAH10-95	NM_207437	exon67	c.G11533A	p.V3845M	CGGGCCGTGACTG	.	382	164	284	2	.	1	1	0	0	0	A	124409717	G	A	124409717	3	1	62	1	0	0	0	0	1	0	0	0	4609	1145	40	1	11799	1	DNAH10	12	124409717	Missense_Mutation	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	730663	124409717	9442178	941	12932										
NCOR2	9612	hgsc.bcm.edu	37	chr12	124856730	124856730	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	cctcggccgtggcctcagcgGcctccgcgtccttgcccttg	12	19	1	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	NCOR2-229	NM_006312	exon22	c.C2645A	p.A882D	TCAGCGGCCTCCG	.	71	41	2	0	.	68	33	35	0	0	T	124856730	G	T	124856730	3	4	62	1	0	0	0	0	1	0	0	0	10265	1203	42	3	5035	3	NCOR2	12	124856730	Missense_Mutation	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	447013	124856730	8995165	942	12933										
AACS	65985	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr12	125550233	125550233	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	agatggaccgcttccgggcgGctgtgggcgccgcctgcggc	18	14	0	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	AACS-92	NM_023928	exon1	c.G103C	p.A35P	CGGGCGGCTGTGG	.	145	44	68	0	.	18	9	9	0	0	C	125550233	G	C	125550233	3	2	62	1	0	0	0	0	1	0	0	0	9	1203	42	3	105	3	AACS	12	125550233	Missense_Mutation	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	693503	125550233	8301662	943	12934										
RIMBP2	23504	hgsc.bcm.edu	37	chr12	130921471	130921471	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	accggggtgccctgtggctgTggcaggatgcggctgggtga	20	9	0	1	rs2292663	byfrequency	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	RIMBP2-142	NM_015347	exon10	c.A1971G	p.P657P	TGGCTGTGGCAGG	.	54	22	0	0	T|0.868;C|0.132	0	0	0	0	0	C	130921471	T	C	130921471	2	2	62	1	0	0	0	0	0	0	0	1	13398	1683	59	4		4	RIMBP2	12	130921471	Silent	SNP	T	TCGA-PK-A5HB-01A-11D-A29I-10	5371238	130921471	2930424	944	12935										
ULK1	8408	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	chr12	132401137	132401137	+	Splice_Site	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	cccaagggcccctttggccgGtgagttgaggggacaggcct	16	12	0	2	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ULK1-758	NM_003565	exon20	c.2072+1G>T	.	TGGCCGGTGAGTT	.	19	10	10	0	.	2	0	2	0	0	T	132401137	G	T	132401137	5	4	62	1	0	0	0	0	0	0	1	0	17013	1275	44	3	2151	3	ULK1	12	132401137	Splice_Site	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	1479666	132401137	1450758	945	12936										
FLT1	2321	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr13	28883025	28883025	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	aaaagttcttcaaaggttttGattctttccaggctcatgaa	7	7	4	2	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	FLT1-1406	NM_002019	exon28	c.C3675T	p.I1225I	GGTTTTGATTCTT	.	72	53	100	0	.	27	27	0	0	0	A	28883025	G	A	28883025	2	1	62	1	0	0	0	0	0	0	0	1	5960	1280	45	3		3	FLT1	13	28883025	Silent	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10		28883025	86286853	946	12937										
PDS5B	23047	bcgsc.ca	37	chr13	33232435	33232435	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gaggatacaaagagcccacaAttcaataggtatttttattt	7	6	1	1	rs2301393	byfrequency	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PDS5B-94	NM_015032	exon4	c.A372G	p.Q124Q	CCCACAATTCAAT	.	68	4	129	0	A|0.686;G|0.314	11	11	0	0	0	G	33232435	A	G	33232435	2	3	62	1	0	0	0	0	0	0	0	1	11721	98	4	4		4	PDS5B	13	33232435	Silent	SNP	A	TCGA-PK-A5HB-01A-11D-A29I-10	4349410	33232435	81937443	947	12938										
PDS5B	23047	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr13	33338706	33338706	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	tgccggggaaaaaaagtgacAagagagacgactctgatctt	12	7	2	4	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PDS5B-94	NM_015032	exon31	c.A3598C	p.K1200Q	AGTGACAAGAGAG	.	45	34	118	0	.	9	0	9	0	0	C	33338706	A	C	33338706	3	2	62	1	0	0	0	0	1	0	0	0	11721	131	5	5	3716	5	PDS5B	13	33338706	Missense_Mutation	SNP	A	TCGA-PK-A5HB-01A-11D-A29I-10	106271	33338706	81831172	948	12939										
FREM2	341640	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr13	39262894	39262894	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ccgcaaaacttggtcatcagCgatgaggatgacctagaagc	11	10	2	3	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	FREM2-100	NM_207361	exon1	c.C1413T	p.S471S	CATCAGCGATGAG	.	69	62	82	0	.	0	0	0	0	0	T	39262894	C	T	39262894	2	4	62	1	0	0	0	0	0	0	0	1	6064	767	27	1		1	FREM2	13	39262894	Silent	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	5924188	39262894	75906984	949	12940										
SIAH3	283514	bcgsc.ca	37	chr13	46357696	46357696	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gcgtggcctcccacttgaggCgccgatggtttctgttgagc	14	12	1	2	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SIAH3-92	NM_198849	exon2	c.G632A	p.R211H	TTGAGGCGCCGAT	.	55	44	77	2	.	0	0	0	0	0	T	46357696	C	T	46357696	3	4	62	1	0	0	0	0	1	0	0	0	14336	768	27	1	181	1	SIAH3	13	46357696	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	7094802	46357696	68812182	950	12941										
MLNR	2862	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr13	49796459	49796459	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gaagttgcaggggacactggAggagacacggtgggctacac	17	8	0	1	rs202143577	alternate_allele	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	MLNR-90	NM_001507	exon2	c.A1185T	p.G395G	CACTGGAGGAGAC	.	44	38	74	0	.	0	0	0	0	0	T	49796459	A	T	49796459	2	4	62	1	0	0	0	0	0	0	0	1	9660	291	11	5		5	MLNR	13	49796459	Silent	SNP	A	TCGA-PK-A5HB-01A-11D-A29I-10	3438763	49796459	65373419	951	12942										
KPNA3	3839	hgsc.bcm.edu	37	chr13	50283733	50283733	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ttatcttctcttttgggtgtGataagagatttgggaagtgt	12	3	2	2	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	KPNA3-226	NM_002267	exon12	c.C1007A	p.S336X	GGGTGTGATAAGA	.	65	4	101	0	.	23	23	0	0	0	T	50283733	G	T	50283733	4	4	62	1	0	0	0	0	0	1	0	0	8452	1294	45	3	582	3	KPNA3	13	50283733	Nonsense_Mutation	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	487274	50283733	64886145	952	12943										
MYCBP2	23077	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr13	77780870	77780870	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	agttcaggacttaggatactAcatctggactgcatgtctgc	10	9	3	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	MYCBP2-236	NM_015057	exon24	c.T3507C	p.C1169C	GATACTACATCTG	.	94	72	87	0	.	3	0	3	0	0	G	77780870	A	G	77780870	2	3	62	1	0	0	0	0	0	0	0	1	10046	389	14	4		4	MYCBP2	13	77780870	Silent	SNP	A	TCGA-PK-A5HB-01A-11D-A29I-10	27497137	77780870	37389008	953	12944										
FARP1	10160	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr13	99083455	99083455	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ctcctgcggccactgcaccgGctcatgcactacaagcaggt	10	16	1	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	FARP1-290	NM_005766	exon18	c.G2064A	p.R688R	GCACCGGCTCATG	.	147	105	187	0	.	163	5	158	0	0	A	99083455	G	A	99083455	2	1	62	1	0	0	0	0	0	0	0	1	5695	1190	42	3		3	FARP1	13	99083455	Silent	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	21302585	99083455	16086423	954	12945										
FARP1	10160	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr13	99100570	99100570	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	caaagagtctcttgtgtattGatggccggacacactcgttt	10	9	1	2	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	FARP1-290	NM_005766	exon27	c.G3137C	p.X1046S	TGTATTGATGGCC	.	148	115	208	0	.	173	6	167	0	0	C	99100570	G	C	99100570	3	2	62	1	0	0	0	0	1	0	0	0	5695	1285	45	3	3462	3	FARP1	13	99100570	Missense_Mutation	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	17115	99100570	16069308	955	12946										
TPP2	7174	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr13	103288650	103288650	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ttttactgttactgttggaaAtaaccgtggcatctacctcc	7	10	1	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TPP2-92	NM_003291	exon13	c.A1586G	p.N529S	TTGGAAATAACCG	.	95	76	176	0	.	3	0	3	0	0	G	103288650	A	G	103288650	3	3	62	1	0	0	0	0	1	0	0	0	16450	101	4	4	1636	4	TPP2	13	103288650	Missense_Mutation	SNP	A	TCGA-PK-A5HB-01A-11D-A29I-10	4188080	103288650	11881228	956	12947										
CDC16	8881	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr13	115030673	115030673	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	tttctgttacaatgcttggtCattgcatcgaaatgtacatt	7	7	2	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CDC16-226	NM_003903	exon17	c.C1561T	p.H521Y	CTTGGTCATTGCA	.	98	78	151	1	.	22	0	22	0	0	T	115030673	C	T	115030673	3	4	62	1	0	0	0	0	1	0	0	0	3064	826	29	3	1627	3	CDC16	13	115030673	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	11742023	115030673	139205	957	12948										
POTEG	404785	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	19573146	19573146	+	Splice_Site	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	taagggtggtgatagaaaggTatacttttatattcaaatgt	10	2	1	2	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	POTEG-1	NM_001005356	exon8	c.1242+2T>C	.	GAAAGGTATACTT	.	1895	270	1480	1	.	0	0	0	0	0	C	19573146	T	C	19573146	5	2	62	1	0	0	0	0	0	0	1	0	12295	1652	57	4	1274	4	POTEG	14	19573146	Splice_Site	SNP	T	TCGA-PK-A5HB-01A-11D-A29I-10		19573146	87776394	958	12949										
OR4K2	390431	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr14	20345046	20345046	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ctcaacaagtggcataattgCgttgtcctgttttattgttt	8	7	1	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	OR4K2-72	NM_001005501	exon1	c.C620T	p.A207V	TAATTGCGTTGTC	.	163	47	138	1	.	0	0	0	0	0	T	20345046	C	T	20345046	3	4	62	1	0	0	0	0	1	0	0	0	11101	768	27	1	622	1	OR4K2	14	20345046	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	771900	20345046	87004494	959	12950										
OR4K15	81127	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr14	20444355	20444355	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	agcttactaatagttgcagaTagtggctttctttctctgag	9	7	2	2	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	OR4K15-69	NM_001005486	exon1	c.T678A	p.D226E	TGCAGATAGTGGC	.	126	60	122	0	.	0	0	0	0	0	A	20444355	T	A	20444355	3	1	62	1	0	0	0	0	1	0	0	0	11099	1403	49	5	680	5	OR4K15	14	20444355	Missense_Mutation	SNP	T	TCGA-PK-A5HB-01A-11D-A29I-10	99309	20444355	86905185	960	12951										
OR11G2	390439	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr14	20666484	20666484	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	aaccctgtgatatatagtctTaggaacaaagatatgagaaa	8	5	1	3	rs200553632	alternate_allele	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	OR11G2-70	NM_001005503	exon1	c.T990C	p.L330L	TAGTCTTAGGAAC	.	75	38	49	0	T|0.999;G|0.000	0	0	0	0	0	C	20666484	T	C	20666484	2	2	62	1	0	0	0	0	0	0	0	1	10954	1741	61	4		4	OR11G2	14	20666484	Silent	SNP	T	TCGA-PK-A5HB-01A-11D-A29I-10	222129	20666484	86683056	961	12952										
APEX1	328	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr14	20924074	20924074	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	tatattactcattttatagaGccagaggccaagaagagtaa	8	6	1	4	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	APEX1-661	NM_080648	exon3	c.G60A	p.E20E	TATAGAGCCAGAG	.	26	12	18	0	.	0	0	0	0	0	A	20924074	G	A	20924074	2	1	62	1	0	0	0	0	0	0	0	1	769	985	34	3		3	APEX1	14	20924074	Silent	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	257590	20924074	86425466	962	12953										
OR6S1	341799	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr14	21109455	21109455	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ctcatgagcaaggggtagcgCagaggatgacagatggccag	16	8	1	4	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	OR6S1-70	NM_001001968	exon1	c.G396A	p.L132L	GTAGCGCAGAGGA	.	258	106	199	0	.	0	0	0	0	0	T	21109455	C	T	21109455	2	4	62	1	0	0	0	0	0	0	0	1	11238	697	25	3		3	OR6S1	14	21109455	Silent	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	185381	21109455	86240085	963	12954										
OR5AU1	390445	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr14	21623596	21623597	+	Frame_Shift_Ins	INS	-	-	A													0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	cctgcactgtaggagcccacINSaatcagcgaggcacagacct					novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	OR5AU1-68	NM_001004731	exon1	c.589_590insT	p.V197fs	AGCCCACAATCAG	.	124	53	82	0	.	0	0	0	0	0	A	21623597	-	A	21623596	7	5	62	1	0	1	1	0	0	0	0	0	11176	478	17	0	502	0	OR5AU1	14	21623596	Frame_Shift_Ins	INS	-	TCGA-PK-A5HB-01A-11D-A29I-10	514141	21623596	85725944	964	12955										
HAUS4	54930	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr14	23415765	23415765	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ccttgctgaactcctggaggGcccaccgcttgttctctgtt	10	14	1	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	HAUS4-91	NM_001166269	exon10	c.C1061T	p.A354V	TGGAGGGCCCACC	.	120	51	91	0	.	13	11	2	0	0	A	23415765	G	A	23415765	3	1	62	1	0	0	0	0	1	0	0	0	6989	1203	42	3	34	3	HAUS4	14	23415765	Missense_Mutation	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	1792169	23415765	83933775	965	12956										
PSMB5	5693	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr14	23504062	23504062	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	cgcgctggttcaccggtagcGgtctctccaacacgctggca	12	15	2	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PSMB5-91	NM_001144932	exon1	c.C29T	p.P10L	GGTAGCGGTCTCT	.	82	45	80	0	.	509	282	227	0	0	A	23504062	G	A	23504062	3	1	62	1	0	0	0	0	1	0	0	0	12712	1116	39	1	863	1	PSMB5	14	23504062	Missense_Mutation	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	88297	23504062	83845478	966	12957										
SLC22A17	51310	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr14	23821014	23821014	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gaggcaaagcccaagatgaaGaggatctgctccaggatcac	12	10	2	3	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SLC22A17-226	NM_016609	exon3	c.C318T	p.L106L	GATGAAGAGGATC	.	240	93	198	2	.	5	5	0	0	0	A	23821014	G	A	23821014	2	1	62	1	0	0	0	0	0	0	0	1	14483	929	33	3		3	SLC22A17	14	23821014	Silent	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	316952	23821014	83528526	967	12958										
IL25	64806	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr14	23844931	23844931	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	agacaggctcccacatggacCcccggggcaactcggagctg	13	15	0	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	IL25-91	NM_022789	exon2	c.C376T	p.P126S	ATGGACCCCCGGG	.	197	84	162	1	.	0	0	0	0	0	T	23844931	C	T	23844931	3	4	62	1	0	0	0	0	1	0	0	0	7699	623	22	3	395	3	IL25	14	23844931	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	23917	23844931	83504609	968	12959										
MYH6	4624	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr14	23865566	23865566	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ggcctgcatgcgcgtgatgaTgcggctcagcctctcatccc	12	15	2	2	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	MYH6-94	NM_002471	exon20	c.A2356G	p.I786V	TGATGATGCGGCT	.	73	34	67	1	.	0	0	0	0	0	C	23865566	T	C	23865566	3	2	62	1	0	0	0	0	1	0	0	0	10066	1464	51	4	3543	4	MYH6	14	23865566	Missense_Mutation	SNP	T	TCGA-PK-A5HB-01A-11D-A29I-10	20635	23865566	83483974	969	12960										
MYH6	4624	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr14	23872558	23872558	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gggtggcaggcaggttcaccCagcaactccggcttcttgtt	13	12	2	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	MYH6-94	NM_002471	exon10	c.G897C	p.L299L	TTCACCCAGCAAC	.	101	44	86	0	.	0	0	0	0	0	G	23872558	C	G	23872558	2	3	62	1	0	0	0	0	0	0	0	1	10066	608	21	3		3	MYH6	14	23872558	Silent	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	6992	23872558	83476982	970	12961										
MYH7	4625	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr14	23894924	23894924	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	cttggtgtggccaaacttgtActggttgtgatcaatgtcca	11	8	1	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	MYH7-94	NM_000257	exon20	c.T2266A	p.Y756N	ACTTGTACTGGTT	.	159	61	106	1	.	0	0	0	0	0	T	23894924	A	T	23894924	3	4	62	1	0	0	0	0	1	0	0	0	10067	391	14	5	3625	5	MYH7	14	23894924	Missense_Mutation	SNP	A	TCGA-PK-A5HB-01A-11D-A29I-10	22366	23894924	83454616	971	12962										
RNF31	55072	hgsc.bcm.edu;bcgsc.ca	37	chr14	24619809	24619809	+	Frame_Shift_Del	DEL	G	G	-													0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ttctctctgccttcccagcaGggggatgctttgctggcctc					novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	RNF31-90	NM_017999	exon8	c.1200delG	p.Q400fs	CCAGCAGGGGGAT	.	146	65	115	1	.	0	0	0	0	0	-	24619809	G	-	24619809	7	5	62	1	0	1	0	1	0	0	0	0	13522	991	35	0	1230	0	RNF31	14	24619809	Frame_Shift_Del	DEL	G	TCGA-PK-A5HB-01A-11D-A29I-10	724885	24619809	82729731	972	12963										
TM9SF1	10548	bcgsc.ca	37	chr14	24662159	24662159	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	agaaaccaccatcgtcaccaCggcgcctgtcactccgacgc	8	18	2	1	rs201569838		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TM9SF1-91	NM_001014842	exon3	c.G662A	p.R221H	TCACCACGGCGCC	.	288	152	206	3	C|0.999;T|0.001	159	72	86	0	1	T	24662159	C	T	24662159	3	4	62	1	0	0	0	0	1	0	0	0	16014	536	19	1	1217	1	TM9SF1	14	24662159	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	42350	24662159	82687381	973	12964										
TGM1	7051	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr14	24718579	24718579	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	aagtgactgtcacctccagcGtctgagaagaagcccccatc	9	14	2	3	rs201811993		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TGM1-91	NM_000359	exon15	c.C2394T	p.D798D	TCCAGCGTCTGAG	.	104	54	63	0	G|0.999;A|0.000	4	2	2	0	0	A	24718579	G	A	24718579	2	1	62	1	0	0	0	0	0	0	0	1	15866	1136	40	1		1	TGM1	14	24718579	Silent	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	56420	24718579	82630961	974	12965										
ADCY4	196883	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr14	24801000	24801000	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	taggcccggctgacctggtgCttcttctcggtgtccagccg	13	14	2	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ADCY4-93	NM_001198592	exon5	c.G663A	p.K221K	CTGGTGCTTCTTC	.	118	44	64	0	.	0	0	0	0	0	T	24801000	C	T	24801000	2	4	62	1	0	0	0	0	0	0	0	1	296	796	28	3		3	ADCY4	14	24801000	Silent	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	82421	24801000	82548540	975	12966										
PPP2R3C	55012	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	35585883	35585883	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ttctacctcctttccattcgGagtaatattttgtaaataaa	4	8	1	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PPP2R3C-227	NM_017917	exon2	c.C119G	p.S40C	CATTCGGAGTAAT	.	41	9	26	0	.	16	9	7	0	0	C	35585883	G	C	35585883	3	2	62	1	0	0	0	0	1	0	0	0	12422	1174	41	3	1290	3	PPP2R3C	14	35585883	Missense_Mutation	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	10784883	35585883	71763657	976	12967										
PAX9	5083	ucsc.edu;bcgsc.ca	37	chr14	37135761	37135761	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gccgccccgcacgcggtgaaCgggttggagaagggagccct	17	13	0	2	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PAX9-228	NM_006194	exon4	c.C726T	p.N242N	GGTGAACGGGTTG	.	311	126	197	2	.	0	0	0	0	0	T	37135761	C	T	37135761	2	4	62	1	0	0	0	0	0	0	0	1	11515	535	19	1		1	PAX9	14	37135761	Silent	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	1549878	37135761	70213779	977	12968										
FANCM	57697	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr14	45644600	45644600	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	atagattctgtagataatgaCagaaattccactgttgaaaa	7	5	1	5	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	FANCM-569	NM_020937	exon14	c.C2643T	p.D881D	TAATGACAGAAAT	.	37	13	40	0	.	2	2	0	0	0	T	45644600	C	T	45644600	2	4	62	1	0	0	0	0	0	0	0	1	5690	477	17	3		3	FANCM	14	45644600	Silent	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	8508839	45644600	61704940	978	12969										
FANCM	57697	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	45654431	45654431	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	cttacttagcatgtagctagGaagtttttagatgatgaagc	10	5	0	3	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	FANCM-569	NM_020937	exon18	c.G4527A	p.R1509R	AGCTAGGAAGTTT	.	221	92	229	2	.	0	0	0	0	0	A	45654431	G	A	45654431	2	1	62	1	0	0	0	0	0	0	0	1	5690	1165	41	3		3	FANCM	14	45654431	Silent	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	9831	45654431	61695109	979	12970										
FRMD6	122786	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr14	52182163	52182163	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	tgagcaacagccaccgcctcTatatgaatctgcagcctgtc	8	14	2	2	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	FRMD6-524	NM_001267046	exon10	c.T970C	p.Y324H	CGCCTCTATATGA	.	88	41	79	0	.	1	0	1	0	0	C	52182163	T	C	52182163	3	2	62	1	0	0	0	0	1	0	0	0	6073	1522	53	4	980	4	FRMD6	14	52182163	Missense_Mutation	SNP	T	TCGA-PK-A5HB-01A-11D-A29I-10	6527732	52182163	55167377	980	12971										
NID2	22795	broad.mit.edu	37	chr14	52478281	52478281	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	aagctgctgacctgaattcaCgatcgtctcaggctctgctc	9	13	3	2	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	NID2-158	NM_007361	exon17	c.G3541A	p.V1181M	AATTCACGATCGT	.	139	5	76	0	.	0	0	0	0	0	T	52478281	C	T	52478281	3	4	62	1	0	0	0	0	1	0	0	0	10444	536	19	1	610	1	NID2	14	52478281	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	296118	52478281	54871259	981	12972										
SAMD4A	23034	hgsc.bcm.edu	37	chr14	55034812	55034812	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ccgagctgcacgtcctcgaaCgcgaggccaacagccccggt	12	17	0	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SAMD4A-90	NM_015589	exon1	c.C178T	p.R60C	CTCGAACGCGAGG	.	20	9	4	0	.	6	3	3	0	0	T	55034812	C	T	55034812	3	4	62	1	0	0	0	0	1	0	0	0	13856	536	19	1	177	1	SAMD4A	14	55034812	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	2556531	55034812	52314728	982	12973										
KTN1	3895	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	56103915	56103915	+	Splice_Site	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	aaatgtaatgttttattacaGatttacagagtaaatttgtg	7	2	0	2	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	KTN1-1147	NM_001079521	exon11	c.1550-1G>A	.	ATTACAGATTTAC	.	202	79	169	0	.	0	0	0	0	0	A	56103915	G	A	56103915	5	1	62	1	0	0	0	0	0	0	1	0	8607	956	33	3	1587	3	KTN1	14	56103915	Splice_Site	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	1069103	56103915	51245625	983	12974										
SGPP1	81537	broad.mit.edu;mdanderson.org	37	chr14	64194307	64194307	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	agttgctcacgcgggccagcTggccctcctcgcccgtcagc	12	18	2	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SGPP1-90	NM_030791	exon1	c.A356G	p.Q119R	GCCAGCTGGCCCT	.	23	11	17	0	.	7	6	1	0	0	C	64194307	T	C	64194307	3	2	62	1	0	0	0	0	1	0	0	0	14254	1580	55	4	981	4	SGPP1	14	64194307	Missense_Mutation	SNP	T	TCGA-PK-A5HB-01A-11D-A29I-10	8090392	64194307	43155233	984	12975										
SYNE2	23224	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr14	64644145	64644145	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	aagttttaaaggcacaaagtGaagatcctcttccagagctt	8	8	1	3	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SYNE2-164	NM_182914	exon96	c.G17500A	p.E5834K	CAAAGTGAAGATC	.	209	91	180	0	.	18	12	6	0	0	A	64644145	G	A	64644145	3	1	62	1	0	0	0	0	1	0	0	0	15483	1291	45	3	17878	3	SYNE2	14	64644145	Missense_Mutation	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	449838	64644145	42705395	985	12976										
HSPA2	3306	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr14	65009141	65009141	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	tgaccggatggtgcaggaggCggagcggtacaaatcggaag	18	7	0	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	HSPA2-226	NM_021979	exon1	c.C1574T	p.A525V	AGGAGGCGGAGCG	.	151	61	125	0	.	40	22	18	0	0	T	65009141	C	T	65009141	3	4	62	1	0	0	0	0	1	0	0	0	7432	768	27	1	1576	1	HSPA2	14	65009141	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	364996	65009141	42340399	986	12977										
SPTB	6710	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr14	65249147	65249147	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ggtcggagctcctggcagccGagaggtgctgggtcttctcc	16	12	2	1	rs200559187	alternate_allele	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SPTB-100	NM_000347	exon19	c.C4127A	p.S1376X	GCAGCCGAGAGGT	.	148	77	74	0	G|0.999;A|0.000	0	0	0	0	0	T	65249147	G	T	65249147	4	4	62	1	0	0	0	0	0	1	0	0	15155	1059	37	2	2996	2	SPTB	14	65249147	Nonsense_Mutation	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	240006	65249147	42100393	987	12978										
SPTB	6710	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr14	65263322	65263322	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gagccaggtctctctcattgCggccttccggtcaaagcgcc	11	15	3	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SPTB-100	NM_000347	exon10	c.G1294A	p.A432T	TCATTGCGGCCTT	.	100	43	73	0	.	0	0	0	0	0	T	65263322	C	T	65263322	3	4	62	1	0	0	0	0	1	0	0	0	15155	768	27	1	5865	1	SPTB	14	65263322	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	14175	65263322	42086218	988	12979										
MPP5	64398	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr14	67768822	67768822	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	agttcgtatagaaaaggctcGtgatattccgttggtaagtg	12	5	0	2	rs75595607	byfrequency	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	MPP5-91	NM_022474	exon6	c.G788A	p.R263H	AGGCTCGTGATAT	.	122	58	100	1	G|0.999;A|0.001	0	0	0	0	0	A	67768822	G	A	67768822	3	1	62	1	0	0	0	0	1	0	0	0	9765	1145	40	1	802	1	MPP5	14	67768822	Missense_Mutation	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	2505500	67768822	39580718	989	12980										
PCNX	22990	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr14	71492916	71492916	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ttggctcttggattatggtaGcagaaacctgactgcaacca	10	9	1	2	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PCNX-91	NM_014982	exon14	c.G3266A	p.S1089N	ATGGTAGCAGAAA	.	122	43	88	1	.	35	11	24	0	0	A	71492916	G	A	71492916	3	1	62	1	0	0	0	0	1	0	0	0	11620	971	34	3	3320	3	PCNX	14	71492916	Missense_Mutation	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	3724094	71492916	35856624	990	12981										
ACOT4	122970	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr14	74061813	74061813	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gagctgatatttgtctctcaAtggcctcattcttgaagaat	8	8	4	3	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ACOT4-90	NM_152331	exon3	c.A721C	p.M241L	CTCTCAATGGCCT	.	143	58	123	1	.	3	1	2	0	0	C	74061813	A	C	74061813	3	2	62	1	0	0	0	0	1	0	0	0	153	101	4	5	731	5	ACOT4	14	74061813	Missense_Mutation	SNP	A	TCGA-PK-A5HB-01A-11D-A29I-10	2568897	74061813	33287727	991	12982										
TMED10	10972	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr14	75643179	75643179	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	tgcgagagttaatgggcagaTggaaggagatggcaaggacc	17	5	0	3	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TMED10-90	NM_006827	exon1	c.A104G	p.H35R	GGCAGATGGAAGG	.	417	139	296	0	.	322	157	165	0	0	C	75643179	T	C	75643179	3	2	62	1	0	0	0	0	1	0	0	0	16040	1464	51	4	575	4	TMED10	14	75643179	Missense_Mutation	SNP	T	TCGA-PK-A5HB-01A-11D-A29I-10	1581366	75643179	31706361	992	12983										
POMT2	29954	hgsc.bcm.edu	37	chr14	77786922	77786922	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gcttcgcgccacagcctcagCggccacgtcccggcctgcgg	13	19	1	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	POMT2-91	NM_013382	exon1	c.G103A	p.A35T	CCTCAGCGGCCAC	.	40	25	0	0	.	1	0	1	0	0	T	77786922	C	T	77786922	3	4	62	1	0	0	0	0	1	0	0	0	12275	768	27	1	2233	1	POMT2	14	77786922	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	2143743	77786922	29562618	993	12984										
SPTLC2	9517	broad.mit.edu;bcgsc.ca	37	chr14	78036740	78036740	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	atcttactttgccaacaagaGcaggaatgttcattgaattc	7	8	2	2	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SPTLC2-92	NM_004863	exon5	c.C743T	p.A248V	ACAAGAGCAGGAA	.	72	33	48	1	.	0	0	0	0	0	A	78036740	G	A	78036740	3	1	62	1	0	0	0	0	1	0	0	0	15161	971	34	3	977	3	SPTLC2	14	78036740	Missense_Mutation	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	249818	78036740	29312800	994	12985										
DIO2	1734	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr14	80677760	80677760	+	Frame_Shift_Del	DEL	A	A	-													0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ccaggaagaggcagttggagAaaaaaactggcagaatttgc					novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	DIO2-22	NM_001242503	exon1	c.56delT	p.F19fs	TTGGAGAAAAAAA	.	92	15	65	0	.	0	0	0	0	0	-	80677760	A	-	80677760	7	5	62	1	0	1	0	1	0	0	0	0	4536	246	9	0	885	0	DIO2	14	80677760	Frame_Shift_Del	DEL	A	TCGA-PK-A5HB-01A-11D-A29I-10	2641020	80677760	26671780	995	12986										
TSHR	7253	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr14	81557476	81557476	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	aaagtttattccactgatatAttctttatactgtaagtatg	5	5	1	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TSHR-1650	NM_000369	exon5	c.A456T	p.I152I	TGATATATTCTTT	.	34	18	48	0	.	0	0	0	0	0	T	81557476	A	T	81557476	2	4	62	1	0	0	0	0	0	0	0	1	16660	439	16	5		5	TSHR	14	81557476	Silent	SNP	A	TCGA-PK-A5HB-01A-11D-A29I-10	879716	81557476	25792064	996	12987										
FLRT2	23768	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	86089453	86089453	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	agcgtccagccatgagcagaCgacgtcccacagcatgggct	12	14	0	2	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	FLRT2-94	NM_013231	exon2	c.C1595T	p.T532M	AGCAGACGACGTC	.	184	79	165	1	.	3	1	2	0	0	T	86089453	C	T	86089453	3	4	62	1	0	0	0	0	1	0	0	0	5958	536	19	1	1597	1	FLRT2	14	86089453	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	4531977	86089453	21260087	997	12988										
SMEK1	55671	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr14	91927933	91927933	+	Frame_Shift_Del	DEL	T	T	-													0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ttgttttcagaagcacttccTtttcctcactttcttttact					novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SMEK1-226	NM_032560	exon15	c.2144delA	p.K715fs	ACTTCCTTTTCCT	.	102	38	92	0	.	0	0	0	0	0	-	91927933	T	-	91927933	7	5	62	1	0	1	0	1	0	0	0	0	14828	1609	56	0	326	0	SMEK1	14	91927933	Frame_Shift_Del	DEL	T	TCGA-PK-A5HB-01A-11D-A29I-10	5838480	91927933	15421607	998	12989										
SLC24A4	123041	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr14	92792243	92792243	+	Silent	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gcttctgctagcaaacgtgtCctgccagacacgtggagaaa	11	11	1	2	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SLC24A4-93	NM_153646	exon2	c.C162A	p.V54V	ACGTGTCCTGCCA	.	98	41	96	0	.	0	0	0	0	0	A	92792243	C	A	92792243	2	1	62	1	0	0	0	0	0	0	0	1	14503	842	30	3		3	SLC24A4	14	92792243	Silent	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	864310	92792243	14557297	999	12990										
SLC24A4	123041	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr14	92909757	92909757	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ctggcaggtggtccgtctgaCgtggtgggccgtgtgccgag	19	10	1	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SLC24A4-93	NM_153646	exon7	c.C596T	p.T199M	GTCTGACGTGGTG	.	148	64	110	0	.	0	0	0	0	0	T	92909757	C	T	92909757	3	4	62	1	0	0	0	0	1	0	0	0	14503	536	19	1	571	1	SLC24A4	14	92909757	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	117514	92909757	14439783	1000	12991										
GOLGA5	9950	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	93277940	93277940	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	aaagtggaaatggaacgtcaGaatttagcagaagcaattac	10	5	1	2	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	GOLGA5-677	NM_005113	exon6	c.G1161A	p.Q387Q	ACGTCAGAATTTA	.	364	145	314	1	.	69	37	32	0	0	A	93277940	G	A	93277940	2	1	62	1	0	0	0	0	0	0	0	1	6576	933	33	3		3	GOLGA5	14	93277940	Silent	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	368183	93277940	14071600	1001	12992										
SERPINA6	866	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr14	94772527	94772527	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gtcatagactccagagatggTgacctttggaatgtacaggt	12	7	1	3	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SERPINA6-653	NM_001756	exon4	c.A913G	p.T305A	AGATGGTGACCTT	.	132	69	102	0	.	0	0	0	0	0	C	94772527	T	C	94772527	3	2	62	1	0	0	0	0	1	0	0	0	14128	1696	59	4	312	4	SERPINA6	14	94772527	Missense_Mutation	SNP	T	TCGA-PK-A5HB-01A-11D-A29I-10	1494587	94772527	12577013	1002	12993										
SERPINA3	12	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr14	95088767	95088767	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ccagctgggcattgaggaagCcttcaccagcaaggctgacc	12	13	1	2	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SERPINA3-653	NM_001085	exon4	c.C1007T	p.A336V	AGGAAGCCTTCAC	.	128	52	90	0	.	41	24	17	0	0	T	95088767	C	T	95088767	3	4	62	1	0	0	0	0	1	0	0	0	14125	739	26	3	1017	3	SERPINA3	14	95088767	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	316240	95088767	12260773	1003	12994										
PAPOLA	10914	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	97027050	97027050	+	Splice_Site	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	tgataaaacagaagcaaaggTatactaatttagcctttaga	7	5	0	3	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PAPOLA-68	NM_032632	exon20	c.2067+2T>C	.	CAAAGGTATACTA	.	140	51	156	1	.	1	0	1	0	0	C	97027050	T	C	97027050	5	2	62	1	0	0	0	0	0	0	1	0	11458	1652	57	4	2147	4	PAPOLA	14	97027050	Splice_Site	SNP	T	TCGA-PK-A5HB-01A-11D-A29I-10	1938283	97027050	10322490	1004	12995										
BCL11B	64919	broad.mit.edu;mdanderson.org	37	chr14	99640941	99640941	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	cgcaggctgccgttctcggaCgagtgctcggacgacgtggc	16	13	1	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	BCL11B-1147	NM_138576	exon4	c.G2232T	p.S744S	CTCGGACGAGTGC	.	54	20	11	0	.	0	0	0	0	0	A	99640941	C	A	99640941	2	1	62	1	0	0	0	0	0	0	0	1	1365	523	19	2		2	BCL11B	14	99640941	Silent	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	2613891	99640941	7708599	1005	12996										
BCL11B	64919	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr14	99641025	99641025	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ttcatgaagtgccgcgacgcCgcgtagcccaccagccactg	11	16	1	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	BCL11B-1147	NM_138576	exon4	c.G2148A	p.A716A	CGACGCCGCGTAG	.	119	48	29	0	.	0	0	0	0	0	T	99641025	C	T	99641025	2	4	62	1	0	0	0	0	0	0	0	1	1365	639	23	1		1	BCL11B	14	99641025	Silent	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	84	99641025	7708515	1006	12997										
BCL11B	64919	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr14	99697775	99697775	+	Frame_Shift_Del	DEL	G	G	-													0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gcgcgcgctgcagcacggcaGggggaggcagggcgggagag					novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	BCL11B-1147	NM_138576	exon3	c.547delC	p.L183fs	ACGGCAGGGGGAG	.	185	57	38	0	.	0	0	0	0	0	-	99697775	G	-	99697775	7	5	62	1	0	1	0	1	0	0	0	0	1365	991	35	0	2145	0	BCL11B	14	99697775	Frame_Shift_Del	DEL	G	TCGA-PK-A5HB-01A-11D-A29I-10	56750	99697775	7651765	1007	12998										
DYNC1H1	1778	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr14	102476260	102476260	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ccatcttcatcaccatgaacCctggctacgcgggccggtct	9	16	4	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	DYNC1H1-98	NM_001376	exon30	c.C6058T	p.P2020S	ATGAACCCTGGCT	.	166	75	146	0	.	63	39	24	0	0	T	102476260	C	T	102476260	3	4	62	1	0	0	0	0	1	0	0	0	4852	623	22	3	6176	3	DYNC1H1	14	102476260	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	2778485	102476260	4873280	1008	12999										
DYNC1H1	1778	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr14	102516785	102516785	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	tctgcaggtaaccttacctgTctacctgaacttcacccgtg	7	14	3	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	DYNC1H1-98	NM_001376	exon78	c.T13826A	p.V4609D	TACCTGTCTACCT	.	138	65	115	0	.	2	0	2	0	0	A	102516785	T	A	102516785	3	1	62	1	0	0	0	0	1	0	0	0	4852	1667	58	5	14136	5	DYNC1H1	14	102516785	Missense_Mutation	SNP	T	TCGA-PK-A5HB-01A-11D-A29I-10	40525	102516785	4832755	1009	13000										
ZNF839	55778	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr14	102807679	102807680	+	Frame_Shift_Del	DEL	TG	TG	-													0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ggtttttcccctccagtaaaTgtgactgtctctccccgttc					novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	TG	TG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ZNF839-91	NM_018335	exon8	c.1947_1948del	p.649_650del	AGTAAATGTGACT	.	273	86	190	0	.	0	0	0	0	0	-	102807680	TG	-	102807679	7	5	62	1	0	1	0	1	0	0	0	0	18225	1461	51	0	1977	0	ZNF839	14	102807679	Frame_Shift_Del	DEL	TG	TCGA-PK-A5HB-01A-11D-A29I-10	290894	102807679	4541861	1010	13001										
CINP	51550	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr14	102816363	102816363	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	tggtagttgaagacagctttTccattttcacctgtattttg	8	7	1	2	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CINP-178	NM_001177611	exon4	c.A374T	p.E125V	AGCTTTTCCATTT	.	109	54	88	0	.	89	47	42	0	0	A	102816363	T	A	102816363	3	1	62	1	0	0	0	0	1	0	0	0	3437	1783	62	5	317	5	CINP	14	102816363	Missense_Mutation	SNP	T	TCGA-PK-A5HB-01A-11D-A29I-10	8684	102816363	4533177	1011	13002										
TECPR2	9895	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr14	102931570	102931570	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	acttccgtgtagggactcagCctctcaatcccagtctcatg	8	14	3	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TECPR2-92	NM_001172631	exon17	c.C3733T	p.P1245S	ACTCAGCCTCTCA	.	179	79	142	0	.	14	7	7	0	0	T	102931570	C	T	102931570	3	4	62	1	0	0	0	0	1	0	0	0	15781	739	26	3	3795	3	TECPR2	14	102931570	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	115207	102931570	4417970	1012	13003										
TRMT61A	115708	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr14	103999082	103999082	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gtgcgcacccaggacgtgtgCcgcagtggctttggcgtgag	17	11	0	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TRMT61A-90	NM_152307	exon3	c.C495T	p.C165C	CGTGTGCCGCAGT	.	256	124	96	0	.	5	4	1	0	0	T	103999082	C	T	103999082	2	4	62	1	0	0	0	0	0	0	0	1	16607	747	26	3		3	TRMT61A	14	103999082	Silent	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	1067512	103999082	3350458	1013	13004										
PPP1R13B	23368	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr14	104206356	104206356	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	cagatgagctcctctggttcGggggaaggtaactcattatc	12	9	2	2	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PPP1R13B-227	NM_015316	exon12	c.C2397T	p.P799P	TGGTTCGGGGGAA	.	70	23	42	0	.	14	9	5	0	0	A	104206356	G	A	104206356	2	1	62	1	0	0	0	0	0	0	0	1	12389	1103	39	1		1	PPP1R13B	14	104206356	Silent	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	207274	104206356	3143184	1014	13005										
KIF26A	26153	hgsc.bcm.edu	37	chr14	104644099	104644099	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	caccacagcggtggcagcagTggctatgagagcctgcggcg	16	12	0	1	rs2497297	byfrequency	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	KIF26A-24	NM_015656	exon12	c.T4974C	p.S1658S	CAGCAGTGGCTAT	.	18	10	0	0	T|0.603;C|0.397	23	7	16	0	0	C	104644099	T	C	104644099	2	2	62	1	0	0	0	0	0	0	0	1	8315	1693	59	4		4	KIF26A	14	104644099	Silent	SNP	T	TCGA-PK-A5HB-01A-11D-A29I-10	437743	104644099	2705441	1015	13006										
INF2	64423	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr14	105172438	105172438	+	Frame_Shift_Del	DEL	G	G	-													0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gaggctaaggccgaggacgaGgaggagctgctgcgagtctc					novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	INF2-492	NM_022489	exon6	c.768delG	p.E256fs	GGACGAGGAGGAG	.	262	116	159	0	.	0	0	0	0	0	-	105172438	G	-	105172438	7	5	62	1	0	1	0	1	0	0	0	0	7755	991	35	0	790	0	INF2	14	105172438	Frame_Shift_Del	DEL	G	TCGA-PK-A5HB-01A-11D-A29I-10	528339	105172438	2177102	1016	13007										
AHNAK2	113146	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr14	105416057	105416057	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gggcatcttgaaactgggcaTatccaccttgggcaagtgcc	12	11	1	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	AHNAK2-47	NM_138420	exon7	c.A5731G	p.M1911V	TGGGCATATCCAC	.	270	116	190	0	.	0	0	0	0	0	C	105416057	T	C	105416057	3	2	62	1	0	0	0	0	1	0	0	0	415	1406	49	4	11660	4	AHNAK2	14	105416057	Missense_Mutation	SNP	T	TCGA-PK-A5HB-01A-11D-A29I-10	243619	105416057	1933483	1017	13008										
TMEM121	80757	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr14	105995324	105995324	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gtgctggtgggcgacgtgtgCttcctgctggtgctgcgcta	17	10	0	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TMEM121-90	NM_025268	exon2	c.C153T	p.C51C	CGTGTGCTTCCTG	.	157	65	32	0	.	3	2	1	0	0	T	105995324	C	T	105995324	2	4	62	1	0	0	0	0	0	0	0	1	16072	805	28	3		3	TMEM121	14	105995324	Silent	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	579267	105995324	1354216	1018	13009										
OR4M2	390538	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr15	22369302	22369302	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	acagggccatgtccacctgcTattcccacattaccattgtg	7	14	0	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	OR4M2-69	NM_001004719	exon1	c.T727C	p.Y243H	ACCTGCTATTCCC	.	488	72	430	0	.	0	0	0	0	0	C	22369302	T	C	22369302	3	2	62	1	0	0	0	0	1	0	0	0	11105	1522	53	4	729	4	OR4M2	15	22369302	Missense_Mutation	SNP	T	TCGA-PK-A5HB-01A-11D-A29I-10		22369302	80162090	1019	13010										
TUBGCP5	114791	hgsc.bcm.edu;bcgsc.ca	37	chr15	22855112	22855113	+	Frame_Shift_Ins	INS	-	-	A													0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	agaaaagacagaaaatgaagINSaaaaaatgagtgataacgct					novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TUBGCP5-91	NM_052903	exon13	c.1573_1574insA	p.E525fs	AATGAAGAAAAAA	.	361	156	298	2	.	0	0	0	0	0	A	22855113	-	A	22855112	7	5	62	1	0	1	1	0	0	0	0	0	16807	943	33	0	1623	0	TUBGCP5	15	22855112	Frame_Shift_Ins	INS	-	TCGA-PK-A5HB-01A-11D-A29I-10	485810	22855112	79676280	1020	13011										
HERC2	8924	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr15	28377252	28377252	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	agaatgggaaataccttcatAggcactttacagccatcgct	8	10	1	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	HERC2-234	NM_004667	exon81	c.T12564C	p.P4188P	CTTCATAGGCACT	.	257	114	252	0	.	0	0	0	0	0	G	28377252	A	G	28377252	2	3	62	1	0	0	0	0	0	0	0	1	7079	407	15	4		4	HERC2	15	28377252	Silent	SNP	A	TCGA-PK-A5HB-01A-11D-A29I-10	5522140	28377252	74154140	1021	13012										
HERC2	8924	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr15	28408358	28408358	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ccaccacacgagtgtcatccGcaatcagcagactggtgaac	9	14	2	2	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	HERC2-234	NM_004667	exon69	c.C10628T	p.A3543V	TCATCCGCAATCA	.	73	34	57	0	.	11	5	6	0	0	A	28408358	G	A	28408358	3	1	62	1	0	0	0	0	1	0	0	0	7079	1087	38	1	3976	1	HERC2	15	28408358	Missense_Mutation	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	31106	28408358	74123034	1022	13013										
HERC2	8924	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr15	28443647	28443647	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	agaagaacttggtggaggatAgcctacagatgtcaataaca	11	6	1	3	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	HERC2-234	NM_004667	exon50	c.T7888C	p.Y2630H	GAGGATAGCCTAC	.	127	55	106	0	.	0	0	0	0	0	G	28443647	A	G	28443647	3	3	62	1	0	0	0	0	1	0	0	0	7079	420	15	4	6792	4	HERC2	15	28443647	Missense_Mutation	SNP	A	TCGA-PK-A5HB-01A-11D-A29I-10	35289	28443647	74087745	1023	13014										
HERC2	8924	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr15	28473416	28473416	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	agcatgccggaattgagcagAaggtcgaggttgtttgcgcc	15	8	0	2	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	HERC2-234	NM_004667	exon35	c.T5412C	p.L1804L	GAGCAGAAGGTCG	.	62	28	45	0	.	2	1	1	0	0	G	28473416	A	G	28473416	2	3	62	1	0	0	0	0	0	0	0	1	7079	233	9	4		4	HERC2	15	28473416	Silent	SNP	A	TCGA-PK-A5HB-01A-11D-A29I-10	29769	28473416	74057976	1024	13015										
APBA2	321	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr15	29409295	29409295	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	agaccatgcccgccgccatgTtcaggctcctcacgggtcag	11	16	3	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	APBA2-90	NM_005503	exon14	c.T2209C	p.F737L	GCCATGTTCAGGC	.	253	117	151	0	.	14	6	8	0	0	C	29409295	T	C	29409295	3	2	62	1	0	0	0	0	1	0	0	0	757	1725	60	4	2255	4	APBA2	15	29409295	Missense_Mutation	SNP	T	TCGA-PK-A5HB-01A-11D-A29I-10	935879	29409295	73122097	1025	13016										
CHRFAM7A	89832	ucsc.edu;bcgsc.ca	37	chr15	30659681	30659681	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	tactgcagcacgatcaccgtCaccaccaccgagaggcccac	8	18	2	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CHRFAM7A-45	NM_139320	exon9	c.G660A	p.V220V	CACCGTCACCACC	.	1852	385	1366	3	.	2	2	0	0	0	T	30659681	C	T	30659681	2	4	62	1	0	0	0	0	0	0	0	1	3381	813	29	3		3	CHRFAM7A	15	30659681	Silent	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	1250386	30659681	71871711	1026	13017										
EIF2AK4	440275	hgsc.bcm.edu;bcgsc.ca	37	chr15	40326638	40326639	+	Frame_Shift_Ins	INS	-	-	A													0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	aatttataacatcaaagtagINSaaaaaaagtaagttatcact					novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	EIF2AK4-757	NM_001013703	exon38	c.4885_4886insA	p.E1629fs	AAAGTAGAAAAAA	.	135	42	120	1	.	0	0	0	0	0	A	40326639	-	A	40326638	7	5	62	1	0	1	1	0	0	0	0	0	5010	943	33	0	5035	0	EIF2AK4	15	40326638	Frame_Shift_Ins	INS	-	TCGA-PK-A5HB-01A-11D-A29I-10	9666957	40326638	62204754	1027	13018										
CASC5	57082	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr15	40914476	40914476	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	agatagcaacaagccataatAtagtctactgtggtggagtt	10	6	1	1	rs73394756	byfrequency;alternate_allele	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CASC5-660	NM_170589	exon11	c.A2092G	p.I698V	CATAATATAGTCT	.	67	32	49	0	A|0.994;C|0.006	5	2	3	0	0	G	40914476	A	G	40914476	3	3	62	1	0	0	0	0	1	0	0	0	2669	449	16	4	2130	4	CASC5	15	40914476	Missense_Mutation	SNP	A	TCGA-PK-A5HB-01A-11D-A29I-10	587838	40914476	61616916	1028	13019										
VPS18	57617	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr15	41195414	41195415	+	Frame_Shift_Ins	INS	-	-	AG													0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gcccagccgggaacagctcaINSaggctgacctggatgagttg					novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	VPS18-155	NM_020857	exon5	c.2797_2798insAG	p.K933fs	CAGCTCAAGGCTG	.	62	20	32	0	.	0	0	0	0	0	AG	41195415	-	AG	41195414	7	5	62	1	0	1	1	0	0	0	0	0	17232	131	5	0	2815	0	VPS18	15	41195414	Frame_Shift_Ins	INS	-	TCGA-PK-A5HB-01A-11D-A29I-10	280938	41195414	61335978	1029	13020										
MGA	23269	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	42059314	42059314	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gtcagagtctcaaggtgatgCcttgtttggcacctatagct	11	9	2	2	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	MGA-522	NM_001164273	exon24	c.C9034T	p.P3012S	GTGATGCCTTGTT	.	196	87	174	1	.	12	5	7	0	0	T	42059314	C	T	42059314	3	4	62	1	0	0	0	0	1	0	0	0	9568	739	26	3	9124	3	MGA	15	42059314	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	863900	42059314	60472078	1030	13021										
SPTBN5	51332	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	42149686	42149686	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ctccatgctccgccgcagacGcagggcctagggtagaaagt	13	13	0	2	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SPTBN5-91	NM_016642	exon51	c.C8266T	p.R2756C	GCAGACGCAGGGC	.	117	62	104	1	.	0	0	0	0	0	A	42149686	G	A	42149686	3	1	62	1	0	0	0	0	1	0	0	0	15159	1087	38	1	2725	1	SPTBN5	15	42149686	Missense_Mutation	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	90372	42149686	60381706	1031	13022										
LRRC57	255252	bcgsc.ca	37	chr15	42837435	42837435	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ttttaaggcgtggacagcaaGatatcttcactgagatctga	10	7	3	3	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	LRRC57-90	NM_153260	exon5	c.C518T	p.S173F	CAGCAAGATATCT	.	49	25	35	1	.	32	16	16	0	0	A	42837435	G	A	42837435	3	1	62	1	0	0	0	0	1	0	0	0	9040	942	33	3	209	3	LRRC57	15	42837435	Missense_Mutation	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	687749	42837435	59693957	1032	13023										
SPG11	80208	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr15	44918706	44918706	+	Splice_Site	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	atggcgctggcaataacttcCtaggaaaagaaaaacgtttg	10	7	0	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SPG11-95	NM_025137	exon12	c.2068-1G>A	.	AACTTCCTAGGAA	.	46	22	35	0	.	0	0	0	0	0	T	44918706	C	T	44918706	5	4	62	1	0	0	0	0	0	0	1	0	15078	695	24	3	5384	3	SPG11	15	44918706	Splice_Site	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	2081271	44918706	57612686	1033	13024										
SEMA6D	80031	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr15	48054484	48054484	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gggtgatggatctgcccttcGcacaataaaatatgattcca	9	9	1	2	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SEMA6D-138	NM_153617	exon8	c.G626A	p.R209H	CCCTTCGCACAAT	.	83	23	85	1	.	0	0	0	0	0	A	48054484	G	A	48054484	3	1	62	1	0	0	0	0	1	0	0	0	14077	1087	38	1	652	1	SEMA6D	15	48054484	Missense_Mutation	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	3135778	48054484	54476908	1034	13025										
FBN1	2200	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr15	48764789	48764789	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	cactgggcacgaagcccatgTcgcattcacagcggtatcct	10	14	1	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	FBN1-92	NM_000138	exon35	c.A4295G	p.D1432G	CCCATGTCGCATT	.	137	51	112	0	.	25	21	4	0	0	C	48764789	T	C	48764789	3	2	62	1	0	0	0	0	1	0	0	0	5721	1667	58	4	4448	4	FBN1	15	48764789	Missense_Mutation	SNP	T	TCGA-PK-A5HB-01A-11D-A29I-10	710305	48764789	53766603	1035	13026										
FBN1	2200	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr15	48788314	48788314	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	taccttcacatgtttttagaTcaggtttgtagataaatccc	6	8	2	2	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	FBN1-92	NM_000138	exon20	c.A2402T	p.D801V	TTTAGATCAGGTT	.	214	92	220	0	.	9	6	3	0	0	A	48788314	T	A	48788314	3	1	62	1	0	0	0	0	1	0	0	0	5721	1435	50	5	6401	5	FBN1	15	48788314	Missense_Mutation	SNP	T	TCGA-PK-A5HB-01A-11D-A29I-10	23525	48788314	53743078	1036	13027										
DTWD1	56986	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr15	49926737	49926737	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	attttctttgttttaggttgCactcatttttcctggacctc	6	9	2	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	DTWD1-226	NM_001144955	exon4	c.C413T	p.A138V	AGGTTGCACTCAT	.	131	49	114	0	.	0	0	0	0	0	T	49926737	C	T	49926737	3	4	62	1	0	0	0	0	1	0	0	0	4802	710	25	3	423	3	DTWD1	15	49926737	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	1138423	49926737	52604655	1037	13028										
SPPL2A	84888	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr15	51014348	51014350	+	In_Frame_Del	DEL	AAG	AAG	-													0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	agacgaaacatagtatatgtAagaagaaccagtctgaacat					novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	AAG	AAG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SPPL2A-90	NM_032802	exon13	c.1298_1300del	p.433_434del	ATATGTAAGAAGA	.	29	14	28	0	.	0	0	0	0	0	-	51014350	AAG	-	51014348	7	5	62	1	0	1	0	1	0	0	0	0	15125	362	13	0	274	0	SPPL2A	15	51014348	In_Frame_Del	DEL	AAG	TCGA-PK-A5HB-01A-11D-A29I-10	1087611	51014348	51517044	1038	13029										
CYP19A1	1588	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	51514616	51514616	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	cgacgcagaagggtcaacacGtccacatagcccgattcatt	9	13	2	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CYP19A1-93	NM_031226	exon6	c.C558T	p.D186D	CAACACGTCCACA	.	383	206	327	2	.	9	6	3	0	0	A	51514616	G	A	51514616	2	1	62	1	0	0	0	0	0	0	0	1	4154	1136	40	1		1	CYP19A1	15	51514616	Silent	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	500268	51514616	51016776	1039	13030										
DYX1C1	161582	ucsc.edu;bcgsc.ca	37	chr15	55790437	55790437	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ttccgtgcagaacacgtccgTgtctctgacgcacacgcctt	9	15	1	2	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	DYX1C1-91	NM_001033560	exon2	c.A91G	p.T31A	CGTCCGTGTCTCT	.	227	99	175	3	.	3	1	2	0	0	C	55790437	T	C	55790437	3	2	62	1	0	0	0	0	1	0	0	0	4873	1696	59	4	1310	4	DYX1C1	15	55790437	Missense_Mutation	SNP	T	TCGA-PK-A5HB-01A-11D-A29I-10	4275821	55790437	46740955	1040	13031										
PRTG	283659	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr15	56032850	56032850	+	Nonsense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	agttacatcctgtggttcttTtacaaaagacagttcgctaa	7	8	1	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PRTG-92	NM_173814	exon2	c.A127T	p.K43X	GTTCTTTTACAAA	.	76	39	52	0	.	0	0	0	0	0	A	56032850	T	A	56032850	4	1	62	1	0	0	0	0	0	1	0	0	12670	1850	64	5	3401	5	PRTG	15	56032850	Nonsense_Mutation	SNP	T	TCGA-PK-A5HB-01A-11D-A29I-10	242413	56032850	46498542	1041	13032										
RORA	6095	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr15	60803784	60803785	+	Frame_Shift_Del	DEL	TC	TC	-													0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gtacttctgcatacaagctgTctctctgcttttttgacatt					novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	TC	TC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	RORA-290	NM_134260	exon6	c.559_560del	p.187_187del	AAGCTGTCTCTCT	.	191	75	132	0	.	0	0	0	0	0	-	60803785	TC	-	60803784	7	5	62	1	0	1	0	1	0	0	0	0	13563	1667	58	0	1138	0	RORA	15	60803784	Frame_Shift_Del	DEL	TC	TCGA-PK-A5HB-01A-11D-A29I-10	4770934	60803784	41727608	1042	13033										
TLN2	83660	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr15	63097938	63097938	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ggaggacgtgattgctactgCcaacctgagccggaaagccg	14	11	0	2	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TLN2-573	NM_015059	exon48	c.C6617T	p.A2206V	CTACTGCCAACCT	.	178	90	162	0	.	6	4	2	0	0	T	63097938	C	T	63097938	3	4	62	1	0	0	0	0	1	0	0	0	15985	739	26	3	6807	3	TLN2	15	63097938	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	2294154	63097938	39433454	1043	13034										
FBXL22	283807	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr15	63893575	63893575	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gatcgccgttggaccgaaatCacctcggtggggaggacctg	15	11	1	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	FBXL22-90	NM_203373	exon2	c.C434T	p.S145L	CGAAATCACCTCG	.	51	26	27	0	.	0	0	0	0	0	T	63893575	C	T	63893575	3	4	62	1	0	0	0	0	1	0	0	0	5738	838	29	3	422	3	FBXL22	15	63893575	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	795637	63893575	38637817	1044	13035										
HERC1	8925	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr15	63916523	63916523	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	agcattataatgggatgtgcTgttctgtaacagaaggtacg	12	5	1	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	HERC1-666	NM_003922	exon72	c.A13279G	p.S4427G	ATGTGCTGTTCTG	.	116	44	105	0	.	1	1	0	0	0	C	63916523	T	C	63916523	3	2	62	1	0	0	0	0	1	0	0	0	7078	1580	55	4	1334	4	HERC1	15	63916523	Missense_Mutation	SNP	T	TCGA-PK-A5HB-01A-11D-A29I-10	22948	63916523	38614869	1045	13036										
CILP	8483	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	65489585	65489585	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	acacggtcctgatcatagagCatcccactgcacttgaactc	7	14	1	3	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CILP-97	NM_003613	exon9	c.G3039A	p.M1013I	ATAGAGCATCCCA	.	212	94	182	1	.	2	2	0	0	0	T	65489585	C	T	65489585	3	4	62	1	0	0	0	0	1	0	0	0	3435	710	25	3	519	3	CILP	15	65489585	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	1573062	65489585	37041807	1046	13037										
CILP	8483	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr15	65489631	65489631	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	aggcagctgagacattgggcTggtccctgtcccgagtgctc	14	12	0	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CILP-97	NM_003613	exon9	c.A2993C	p.Q998P	TTGGGCTGGTCCC	.	186	71	139	0	.	1	1	0	0	0	G	65489631	T	G	65489631	3	3	62	1	0	0	0	0	1	0	0	0	3435	1580	55	5	565	5	CILP	15	65489631	Missense_Mutation	SNP	T	TCGA-PK-A5HB-01A-11D-A29I-10	46	65489631	37041761	1047	13038										
SLC24A1	9187	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr15	65917184	65917185	+	Frame_Shift_Ins	INS	-	-	C													0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	caagggaatgtttgatagcaINSccccaacttttctgacacat					novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	.	NM_004727	exon2	c.766_767insC	p.T256fs	GATAGCACCCCAA	.	181	52	158	0	.	0	0	0	0	0	C	65917185	-	C	65917184	7	5	62	1	0	1	1	0	0	0	0	0	14500	159	6	0		0	SLC24A1	15	65917184	Frame_Shift_Ins	INS	-	TCGA-PK-A5HB-01A-11D-A29I-10	427553	65917184	36614208	1048	13039										
NOX5	79400	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr15	69331288	69331288	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ccccaccattgctcgctatgAgtggcaccccttcaccatca	6	18	2	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	NOX5-136	NM_024505	exon9	c.A1463G	p.E488G	GCTATGAGTGGCA	.	163	80	119	0	.	0	0	0	0	0	G	69331288	A	G	69331288	3	3	62	1	0	0	0	0	1	0	0	0	10588	304	11	4	1530	4	NOX5	15	69331288	Missense_Mutation	SNP	A	TCGA-PK-A5HB-01A-11D-A29I-10	3414104	69331288	33200104	1049	13040										
BBS4	585	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr15	73029922	73029922	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	acatcagaacaaataagagaGaaataagaatagaatgaatg	8	3	1	6	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	BBS4-90	NM_033028	exon16	c.G1554C	p.E518D	AAGAGAGAAATAA	.	59	24	50	0	.	20	9	11	0	0	C	73029922	G	C	73029922	3	2	62	1	0	0	0	0	1	0	0	0	1340	933	33	3	1616	3	BBS4	15	73029922	Missense_Mutation	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	3698634	73029922	29501470	1050	13041										
STRA6	64220	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr15	74487774	74487774	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	agccagagggtagtagagggCagcataatagaacagtccca	13	8	0	3	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	STRA6-90	NM_001199042	exon7	c.G583A	p.A195T	AGAGGGCAGCATA	.	101	35	79	0	.	6	6	0	0	0	T	74487774	C	T	74487774	3	4	62	1	0	0	0	0	1	0	0	0	15359	710	25	3	1589	3	STRA6	15	74487774	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	1457852	74487774	28043618	1051	13042										
C15orf39	56905	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr15	75498952	75498952	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	caagggccagactctggatgGcaccttcttgcggggggtgc	16	11	2	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	C15orf39-90	NM_015492	exon2	c.G563A	p.G188D	TGGATGGCACCTT	.	65	7	51	0	.	72	68	4	0	0	A	75498952	G	A	75498952	3	1	62	1	0	0	0	0	1	0	0	0	1797	1203	42	3	565	3	C15orf39	15	75498952	Missense_Mutation	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	1011178	75498952	27032440	1052	13043										
C15orf39	56905	bcgsc.ca	37	chr15	75499374	75499374	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gcccctacctgaggcagcagGcagcccaggcaccttacatt	10	16	0	1	rs111653297	byfrequency	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	C15orf39-90	NM_015492	exon2	c.G985A	p.A329T	CAGCAGGCAGCCC	.	147	58	112	3	G|0.500;A|0.500	28	13	15	0	0	A	75499374	G	A	75499374	3	1	62	1	0	0	0	0	1	0	0	0	1797	1203	42	3	987	3	C15orf39	15	75499374	Missense_Mutation	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	422	75499374	27032018	1053	13044										
GOLGA6D	653643	hgsc.bcm.edu;broad.mit.edu	37	chr15	75586567	75586567	+	Frame_Shift_Del	DEL	C	C	-													0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gcccactccaggggccccagCcccccaggaacttggggctg					novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	.	NM_001145224	exon17	c.1919delC	p.A640fs	CCCCAGCCCCCCA	.	223	36	206	0	.	0	0	0	0	0	-	75586567	C	-	75586567	7	5	62	1	0	1	0	1	0	0	0	0	6580	739	26	0	1985	0	GOLGA6D	15	75586567	Frame_Shift_Del	DEL	C	TCGA-PK-A5HB-01A-11D-A29I-10	87193	75586567	26944825	1054	13045										
CSPG4	1464	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr15	75979767	75979767	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	actggccctgcttccacggaGaaggccatggtgtcgcgggg	16	12	0	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CSPG4-229	NM_001897	exon3	c.C3639T	p.F1213F	CACGGAGAAGGCC	.	234	109	130	0	.	0	0	0	0	0	A	75979767	G	A	75979767	2	1	62	1	0	0	0	0	0	0	0	1	3966	933	33	3		3	CSPG4	15	75979767	Silent	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	393200	75979767	26551625	1055	13046										
PSMA4	5685	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr15	78838004	78838004	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ccctttggtgtttcattgctGtacattggctgggataagca	11	8	1	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PSMA4-90	NM_001102667	exon7	c.G405A	p.L135L	ATTGCTGTACATT	.	124	57	105	0	.	230	108	122	0	0	A	78838004	G	A	78838004	2	1	62	1	0	0	0	0	0	0	0	1	12701	1364	48	3		3	PSMA4	15	78838004	Silent	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	2858237	78838004	23693388	1056	13047										
TMC3	342125	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr15	81660598	81660598	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gtgtgttctgtattacctctGcacctgctgcttggtagcct	10	11	2	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TMC3-70	NM_001080532	exon3	c.C308T	p.A103V	ACCTCTGCACCTG	.	97	35	88	0	.	0	0	0	0	0	A	81660598	G	A	81660598	3	1	62	1	0	0	0	0	1	0	0	0	16023	1319	46	3	3074	3	TMC3	15	81660598	Missense_Mutation	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	2822594	81660598	20870794	1057	13048										
EFTUD1	79631	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr15	82512116	82512116	+	Silent	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	tcttggttgttttcttcctgGagcacaggtttaggggtcat	12	7	3	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	EFTUD1-91	NM_024580	exon14	c.C1488A	p.L496L	TTCCTGGAGCACA	.	130	49	102	0	.	20	13	7	0	0	T	82512116	G	T	82512116	2	4	62	1	0	0	0	0	0	0	0	1	4971	1161	41	3		3	EFTUD1	15	82512116	Silent	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	851518	82512116	20019276	1058	13049										
ALPK3	57538	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr15	85401392	85401392	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	caggagccctcccaagaggaGaagttcccaggggaggctct	14	12	1	2	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ALPK3-337	NM_020778	exon6	c.G4029A	p.E1343E	AGAGGAGAAGTTC	.	110	47	81	1	.	1	0	1	0	0	A	85401392	G	A	85401392	2	1	62	1	0	0	0	0	0	0	0	1	546	933	33	3		3	ALPK3	15	85401392	Silent	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	2889276	85401392	17130000	1059	13050										
AKAP13	11214	hgsc.bcm.edu;bcgsc.ca	37	chr15	86287016	86287017	+	Frame_Shift_Ins	INS	-	-	A													0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	agccaaaggaaaagaaggagINSaaaaaaaagaagaacaaaac					novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	AKAP13-258	NM_006738	exon36	c.8364_8365insA	p.E2788fs	GAAGGAGAAAAAA	.	82	32	57	0	.	0	0	0	0	0	A	86287017	-	A	86287016	7	5	62	1	0	1	1	0	0	0	0	0	449	933	33	0	8560	0	AKAP13	15	86287016	Frame_Shift_Ins	INS	-	TCGA-PK-A5HB-01A-11D-A29I-10	885624	86287016	16244376	1060	13051										
AGBL1	123624	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr15	86810268	86810268	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	tttacggttcttctccaaatTtgagtcaggaaatcttcgca	7	9	4	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	.	NM_152336	exon12	c.T1661C	p.F554S	CCAAATTTGAGTC	.	112	45	115	0	.	0	0	0	0	0	C	86810268	T	C	86810268	3	2	62	1	0	0	0	0	1	0	0	0	375	1841	64	4	1703	4	AGBL1	15	86810268	Missense_Mutation	SNP	T	TCGA-PK-A5HB-01A-11D-A29I-10	523252	86810268	15721124	1061	13052										
POLG	5428	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr15	89864046	89864046	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ctgctgggccttctcagctgCctcctgctgtgtgagccggt	13	14	1	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	POLG-228	NM_002693	exon18	c.G2932A	p.A978T	CAGCTGCCTCCTG	.	114	40	64	1	.	56	29	27	0	0	T	89864046	C	T	89864046	3	4	62	1	0	0	0	0	1	0	0	0	12229	739	26	3	811	3	POLG	15	89864046	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	3053778	89864046	12667346	1062	13053										
RCCD1	91433	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr15	91504901	91504901	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ccagcttggatcggcctcgcCgtgtggaatactttgtagat	12	10	0	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	RCCD1-90	NM_001017919	exon8	c.C1033T	p.R345C	CCTCGCCGTGTGG	.	316	146	201	0	.	15	11	4	0	0	T	91504901	C	T	91504901	3	4	62	1	0	0	0	0	1	0	0	0	13210	652	23	1	1059	1	RCCD1	15	91504901	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	1640855	91504901	11026491	1063	13054										
MCTP2	55784	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr15	95013607	95013607	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ctttcatctctggcctgtttGattctggcagcagccaccat	8	13	3	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	MCTP2-93	NM_018349	exon20	c.G2406T	p.L802F	CTGTTTGATTCTG	.	69	29	54	0	.	0	0	0	0	0	T	95013607	G	T	95013607	3	4	62	1	0	0	0	0	1	0	0	0	9429	1281	45	3	2560	3	MCTP2	15	95013607	Missense_Mutation	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	3508706	95013607	7517785	1064	13055										
ARRDC4	91947	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr15	98511297	98511297	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ggctgttggtttttcacttcTggtccagtctcgctgagtgc	12	10	3	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ARRDC4-90	NM_183376	exon4	c.T576C	p.S192S	CACTTCTGGTCCA	.	50	15	37	0	.	5	3	2	0	0	C	98511297	T	C	98511297	2	2	62	1	0	0	0	0	0	0	0	1	986	1567	55	4		4	ARRDC4	15	98511297	Silent	SNP	T	TCGA-PK-A5HB-01A-11D-A29I-10	3497690	98511297	4020095	1065	13056										
IGF1R	3480	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	99250942	99250942	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	cccaagctcacggtcattacCgagtacttgctgctgttccg	9	14	2	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	IGF1R-1490	NM_000875	exon2	c.C246T	p.T82T	CATTACCGAGTAC	.	360	150	256	2	.	23	14	9	0	0	T	99250942	C	T	99250942	2	4	62	1	0	0	0	0	0	0	0	1	7592	639	23	1		1	IGF1R	15	99250942	Silent	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	739645	99250942	3280450	1066	13057										
ADAMTS17	170691	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr15	100514681	100514681	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ctggcagcagcgctggtaccAccgcatgtcctggcagaggt	14	13	0	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ADAMTS17-228	NM_139057	exon22	c.T3214A	p.W1072R	GGTACCACCGCAT	.	185	82	132	0	.	0	0	0	0	0	T	100514681	A	T	100514681	3	4	62	1	0	0	0	0	1	0	0	0	262	159	6	5	77	5	ADAMTS17	15	100514681	Missense_Mutation	SNP	A	TCGA-PK-A5HB-01A-11D-A29I-10	1263739	100514681	2016711	1067	13058										
ADAMTS17	170691	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr15	100533255	100533255	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ccagcaggctgctctcaccgTagaccagtccccagttttcc	8	17	1	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ADAMTS17-228	NM_139057	exon20	c.A2947G	p.T983A	TCACCGTAGACCA	.	97	48	93	2	.	0	0	0	0	0	C	100533255	T	C	100533255	3	2	62	1	0	0	0	0	1	0	0	0	262	1638	57	4	352	4	ADAMTS17	15	100533255	Missense_Mutation	SNP	T	TCGA-PK-A5HB-01A-11D-A29I-10	18574	100533255	1998137	1068	13059										
TM2D3	80213	broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr15	102192528	102192528	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gagcagcacgcgacacaaggCgcggaggcccctcagcggga	16	14	1	0	rs149437101		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TM2D3-91	NM_025141	exon1	c.G37A	p.A13T	ACAAGGCGCGGAG	.	135	44	53	1	A|0.000;C|1.000	39	39	0	0	0	T	102192528	C	T	102192528	3	4	62	1	0	0	0	0	1	0	0	0	16002	768	27	1	730	1	TM2D3	15	102192528	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	1659273	102192528	338864	1069	13060										
OR4F15	390649	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr15	102358817	102358817	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gagcccaagaatgtgtctatActttttagccacttcctcta	6	11	2	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	OR4F15-68	NM_001001674	exon1	c.A428G	p.Y143C	GTCTATACTTTTT	.	264	130	206	0	.	0	0	0	0	0	G	102358817	A	G	102358817	3	3	62	1	0	0	0	0	1	0	0	0	11090	391	14	4	430	4	OR4F15	15	102358817	Missense_Mutation	SNP	A	TCGA-PK-A5HB-01A-11D-A29I-10	166289	102358817	172575	1070	13061										
MSLN	10232	hgsc.bcm.edu;bcgsc.ca	37	chr16	816959	816960	+	Frame_Shift_Ins	INS	-	-	T													0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	tatcccaaggcccgccttgcINStttccagaacatgaacgggt					novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	MSLN-91	NM_013404	exon14	c.1472_1473insT	p.A491fs	GCCTTGCTTTCCA	.	269	125	212	1	.	0	0	0	0	0	T	816960	-	T	816959	7	5	62	1	0	1	1	0	0	0	0	0	9909	797	28	0	1522	0	MSLN	16	816959	Frame_Shift_Ins	INS	-	TCGA-PK-A5HB-01A-11D-A29I-10		816959	89537794	1071	13062										
CHTF18	63922	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	840346	840346	+	Splice_Site	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	tccagcctgttgtttgcacaGcggcgggagcggctgcttca	14	12	1	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CHTF18-227	NM_022092	exon6	c.700-1G>A	.	TGCACAGCGGCGG	.	76	30	44	0	.	2	0	2	0	0	A	840346	G	A	840346	5	1	62	1	0	0	0	0	0	0	1	0	3420	985	34	3	721	3	CHTF18	16	840346	Splice_Site	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	23387	840346	89514407	1072	13063										
CRAMP1L	57585	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr16	1682360	1682360	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	tcaccaagtacatcgactttGatcatggtgagtgtgccacg	10	10	2	2	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	.	NM_020825	exon3	c.G688C	p.D230H	GACTTTGATCATG	.	123	53	71	0	.	0	0	0	0	0	C	1682360	G	C	1682360	3	2	62	1	0	0	0	0	1	0	0	0	3852	1290	45	3	698	3	CRAMP1L	16	1682360	Missense_Mutation	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	842014	1682360	88672393	1073	13064										
MAPK8IP3	23162	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr16	1793368	1793368	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	cacctccctgaacgtgttccCcctggctgacggcacggtac	10	17	0	2	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	MAPK8IP3-1109	NM_015133	exon5	c.C635A	p.P212H	TGTTCCCCCTGGC	.	76	21	56	1	.	12	10	2	0	0	A	1793368	C	A	1793368	3	1	62	1	0	0	0	0	1	0	0	0	9314	623	22	3	653	3	MAPK8IP3	16	1793368	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	111008	1793368	88561385	1074	13065										
MAPK8IP3	23162	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr16	1814309	1814309	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	cctgcccttgcagctgtggtGtgccgcgggcgtcaacctga	14	14	1	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	MAPK8IP3-1109	NM_015133	exon19	c.G2126T	p.C709F	TGTGGTGTGCCGC	.	194	83	38	0	.	0	0	0	0	0	T	1814309	G	T	1814309	3	4	62	1	0	0	0	0	1	0	0	0	9314	1377	48	3	2216	3	MAPK8IP3	16	1814309	Missense_Mutation	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	20941	1814309	88540444	1075	13066										
EME2	197342	hgsc.bcm.edu	37	chr16	1823444	1823444	+	Silent	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ctgctgcggccggagcaggtCctgaagcgcctcgcggtgtg	17	13	0	1	rs761065		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	EME2-229	NM_001257370	exon1	c.C216G	p.V72V	GCAGGTCCTGAAG	.	10	4	0	0	C|0.615;G|0.385	0	0	0	0	0	G	1823444	C	G	1823444	2	3	62	1	0	0	0	0	0	0	0	1	5102	842	30	3		3	EME2	16	1823444	Silent	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	9135	1823444	88531309	1076	13067										
RPS2	6187	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr16	2013252	2013252	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	aggaagaaatcaatgatctcTgattcctgaaacaaacaaga	7	7	2	5	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	RPS2-90	NM_002952	exon4	c.A273G	p.S91S	GATCTCTGATTCC	.	147	56	135	0	.	10	8	2	0	0	C	2013252	T	C	2013252	2	2	62	1	0	0	0	0	0	0	0	1	13666	1567	55	4		4	RPS2	16	2013252	Silent	SNP	T	TCGA-PK-A5HB-01A-11D-A29I-10	189808	2013252	88341501	1077	13068										
ZNF598	90850	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr16	2052607	2052607	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	cttaagcagctcatcattgtCcaggtagcgctcgtcacaga	9	12	3	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ZNF598-432	NM_178167	exon6	c.G592A	p.D198N	CATTGTCCAGGTA	.	205	73	154	0	.	17	6	11	0	0	T	2052607	C	T	2052607	3	4	62	1	0	0	0	0	1	0	0	0	18065	855	30	3	2158	3	ZNF598	16	2052607	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	39355	2052607	88302146	1078	13069										
ZNF598	90850	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr16	2053060	2053060	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ccgcatgtgctgctccaggtCcccgaagaggctgaaaggtg	14	12	0	2	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ZNF598-432	NM_178167	exon5	c.G397A	p.D133N	CCAGGTCCCCGAA	.	161	52	80	0	.	48	31	16	1	0	T	2053060	C	T	2053060	3	4	62	1	0	0	0	0	1	0	0	0	18065	855	30	3	2357	3	ZNF598	16	2053060	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	453	2053060	88301693	1079	13070										
ABCA3	21	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr16	2374440	2374440	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ctccttgctgtggttgaaggGgtgctcgaagaccacggcgg	16	10	0	2	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ABCA3-1015	NM_001089	exon6	c.C412A	p.P138T	TGAAGGGGTGCTC	.	71	34	42	0	.	31	14	17	0	0	T	2374440	G	T	2374440	3	4	62	1	0	0	0	0	1	0	0	0	33	1232	43	3	4814	3	ABCA3	16	2374440	Missense_Mutation	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	321380	2374440	87980313	1080	13071										
CCNF	899	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	2487128	2487128	+	Splice_Site	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	tctgtcctgtctgtccccgcAgtgtctgtgtctgatgaggc	12	12	4	2	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CCNF-658	NM_001761	exon5	c.347-2A>T	.	CCCCGCAGTGTCT	.	65	26	46	0	.	9	0	9	0	0	T	2487128	A	T	2487128	5	4	62	1	0	0	0	0	0	0	1	0	2928	202	7	5	363	5	CCNF	16	2487128	Splice_Site	SNP	A	TCGA-PK-A5HB-01A-11D-A29I-10	112688	2487128	87867625	1081	13072										
CCNF	899	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr16	2487231	2487231	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	tgggtgccgcacctttcatcTggctcttcatccgccctccg	9	17	4	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CCNF-658	NM_001761	exon5	c.T448C	p.W150R	TTCATCTGGCTCT	.	73	30	60	0	.	5	1	4	0	0	C	2487231	T	C	2487231	3	2	62	1	0	0	0	0	1	0	0	0	2928	1580	55	4	466	4	CCNF	16	2487231	Missense_Mutation	SNP	T	TCGA-PK-A5HB-01A-11D-A29I-10	103	2487231	87867522	1082	13073										
ATP6V0C	527	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr16	2564109	2564109	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ctccccacccgcagacatgtCcgagtccaagagcggccccg	10	19	0	2	rs147497038	alternate_allele	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ATP6V0C-91	NM_001198569	exon2	c.C5G	p.S2C	ACATGTCCGAGTC	.	78	44	38	0	C|1.000;T|0.000	349	187	162	0	0	G	2564109	C	G	2564109	3	3	62	1	0	0	0	0	1	0	0	0	1173	855	30	3	7	3	ATP6V0C	16	2564109	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	76878	2564109	87790644	1083	13074										
CEMP1	752014	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr16	2580891	2580891	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	tgcagggatacccacctctgCcttgacggccgcgcacccct	10	18	1	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CEMP1-23	NM_001048212	exon1	c.G184A	p.A62T	CCTCTGCCTTGAC	.	109	49	108	0	.	5	4	1	0	0	T	2580891	C	T	2580891	3	4	62	1	0	0	0	0	1	0	0	0	3230	739	26	3	563	3	CEMP1	16	2580891	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	16782	2580891	87773862	1084	13075										
SRRM2	23524	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr16	2816678	2816678	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	aagtcgctcaccacttgctaTccgccgccgctccagatccc	7	19	1	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SRRM2-93	NM_016333	exon11	c.T6149A	p.I2050N	TTGCTATCCGCCG	.	233	98	183	0	.	210	100	109	1	0	A	2816678	T	A	2816678	3	1	62	1	0	0	0	0	1	0	0	0	15206	1435	50	5	6187	5	SRRM2	16	2816678	Missense_Mutation	SNP	T	TCGA-PK-A5HB-01A-11D-A29I-10	235787	2816678	87538075	1085	13076										
CLDN9	9080	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr16	3063682	3063682	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	caggtgcccagtgtaccacgTgtgtggaggacgaaggtgcc	16	10	0	0	rs199692917		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CLDN9-90	NM_020982	exon1	c.T319C	p.C107R	ACCACGTGTGTGG	.	238	75	206	0	T|0.999;C|0.001	0	0	0	0	0	C	3063682	T	C	3063682	3	2	62	1	0	0	0	0	1	0	0	0	3498	1696	59	4	321	4	CLDN9	16	3063682	Missense_Mutation	SNP	T	TCGA-PK-A5HB-01A-11D-A29I-10	247004	3063682	87291071	1086	13077										
CLDN9	9080	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr16	3063792	3063792	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	tgctggacggcgcacgccatCatccaggacttctacaaccc	9	16	2	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CLDN9-90	NM_020982	exon1	c.C429T	p.I143I	CGCCATCATCCAG	.	179	66	162	0	.	0	0	0	0	0	T	3063792	C	T	3063792	2	4	62	1	0	0	0	0	0	0	0	1	3498	816	29	3		3	CLDN9	16	3063792	Silent	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	110	3063792	87290961	1087	13078										
C16orf90	646174	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr16	3545393	3545393	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	caccttctcttatgtgcagcTcagaaaatgcacagaccaag	7	12	2	2	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	.	NM_001080524	exon1	c.A29G	p.E10G	TGCAGCTCAGAAA	.	92	34	71	0	.	0	0	0	0	0	C	3545393	T	C	3545393	3	2	62	1	0	0	0	0	1	0	0	0	1847	1551	54	4	531	4	C16orf90	16	3545393	Missense_Mutation	SNP	T	TCGA-PK-A5HB-01A-11D-A29I-10	481601	3545393	86809360	1088	13079										
VASN	114990	bcgsc.ca;mdanderson.org	37	chr16	4431929	4431929	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	acgccgactttggctgcccaGccaccaccaccacagccaca	7	20	0	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	VASN-68	NM_138440	exon2	c.G1051A	p.A351T	TGCCCAGCCACCA	.	112	48	48	2	.	7	7	0	0	0	A	4431929	G	A	4431929	3	1	62	1	0	0	0	0	1	0	0	0	17165	971	34	3	1053	3	VASN	16	4431929	Missense_Mutation	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	886536	4431929	85922824	1089	13080										
USP7	7874	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr16	9004639	9004639	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	cagcgtcgtatttattgtccCcatcgagctgttctactgcc	8	13	1	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	USP7-661	NM_003470	exon11	c.G1124C	p.G375A	TTGTCCCCATCGA	.	68	32	78	0	.	37	18	19	0	0	G	9004639	C	G	9004639	3	3	62	1	0	0	0	0	1	0	0	0	17126	623	22	3	2268	3	USP7	16	9004639	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	4572710	9004639	81350114	1090	13081										
USP7	7874	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr16	9004658	9004658	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	cccatcgagctgttctactgCcacataatccacaaatgatt	5	13	1	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	USP7-661	NM_003470	exon11	c.G1105A	p.A369T	CTACTGCCACATA	.	64	25	74	0	.	36	13	23	0	0	T	9004658	C	T	9004658	3	4	62	1	0	0	0	0	1	0	0	0	17126	739	26	3	2287	3	USP7	16	9004658	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	19	9004658	81350095	1091	13082										
CLEC16A	23274	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	chr16	11272519	11272519	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gggcgaagaggctgcatgtgCtgagcctgtgggcaccgctg	18	10	0	2	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CLEC16A-92	NM_015226	exon23	c.C3134T	p.A1045V	CATGTGCTGAGCC	.	28	13	14	0	.	25	15	10	0	0	T	11272519	C	T	11272519	3	4	62	1	0	0	0	0	1	0	0	0	3506	797	28	3	3224	3	CLEC16A	16	11272519	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	2267861	11272519	79082234	1092	13083										
NTAN1	123803	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr16	15131997	15131997	+	Nonsense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ctggagatgggtgtttttttAaaaacatcaaggtagatcta	10	4	2	2	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	NTAN1-90	NM_173474	exon10	c.T824A	p.L275X	TTTTTTAAAAACA	.	121	41	101	0	.	47	27	20	0	0	T	15131997	A	T	15131997	4	4	62	1	0	0	0	0	0	1	0	0	10724	372	13	5	112	5	NTAN1	16	15131997	Nonsense_Mutation	SNP	A	TCGA-PK-A5HB-01A-11D-A29I-10	3859478	15131997	75222756	1093	13084										
KIAA0430	9665	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr16	15725252	15725252	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	acttacttgacacaagaaccActgtggctggagcagtgtgt	11	9	0	2	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	KIAA0430-90	NM_014647	exon6	c.T1337C	p.V446A	AGAACCACTGTGG	.	138	64	96	0	.	0	0	0	0	0	G	15725252	A	G	15725252	3	3	62	1	0	0	0	0	1	0	0	0	8198	159	6	4	3982	4	KIAA0430	16	15725252	Missense_Mutation	SNP	A	TCGA-PK-A5HB-01A-11D-A29I-10	593255	15725252	74629501	1094	13085										
ARL6IP1	23204	hgsc.bcm.edu;bcgsc.ca	37	chr16	18805952	18805954	+	In_Frame_Del	DEL	TTG	TTG	-													0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gtgagaagcaggttgtggacTtgttgtcccacccaagcaac					novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	TTG	TTG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ARL6IP1-90	NM_015161	exon5	c.460_462del	p.154_154del	GTGGACTTGTTGT	.	556	244	454	1	.	0	0	0	0	0	-	18805954	TTG	-	18805952	7	5	62	1	0	1	0	1	0	0	0	0	943	1606	56	0	157	0	ARL6IP1	16	18805952	In_Frame_Del	DEL	TTG	TCGA-PK-A5HB-01A-11D-A29I-10	3080700	18805952	71548801	1095	13086										
TMC7	79905	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr16	19051758	19051758	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	caggctttgagatccgtctgAcaatccttaggtaatgccta	9	10	1	2	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TMC7-93	NM_024847	exon9	c.A1327C	p.T443P	CGTCTGACAATCC	.	45	20	39	0	.	0	0	0	0	0	C	19051758	A	C	19051758	3	2	62	1	0	0	0	0	1	0	0	0	16027	275	10	5	1361	5	TMC7	16	19051758	Missense_Mutation	SNP	A	TCGA-PK-A5HB-01A-11D-A29I-10	245806	19051758	71302995	1096	13087										
C16orf88	400506	hgsc.bcm.edu	37	chr16	19725705	19725706	+	Frame_Shift_Ins	INS	-	-	T													0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ggcatctccctcctggtggaINSttttttttttcttcttcacc					novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	C16orf88-68	NM_001012991	exon2	c.653_654insA	p.I218fs	TGGTGGATTTTTT	.	51	15	24	0	.	0	0	0	0	0	T	19725706	-	T	19725705	7	5	62	1	0	1	1	0	0	0	0	0	1845	333	12	0	739	0	C16orf88	16	19725705	Frame_Shift_Ins	INS	-	TCGA-PK-A5HB-01A-11D-A29I-10	673947	19725705	70629048	1097	13088										
GPRC5B	51704	ucsc.edu;bcgsc.ca	37	chr16	19883815	19883815	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ggacagagcagatggtctcgTcctcctggatgatgaaggca	14	9	1	4	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	GPRC5B-523	NM_016235	exon2	c.A353G	p.D118G	GTCTCGTCCTCCT	.	427	200	252	3	.	6	5	1	0	0	C	19883815	T	C	19883815	3	2	62	1	0	0	0	0	1	0	0	0	6746	1667	58	4	870	4	GPRC5B	16	19883815	Missense_Mutation	SNP	T	TCGA-PK-A5HB-01A-11D-A29I-10	158110	19883815	70470938	1098	13089										
PDILT	204474	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr16	20376740	20376740	+	Splice_Site	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	aacccctcttggagatacttAcagaacatcacaaatacgtc	5	12	2	2	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PDILT-153	NM_174924	exon10	c.1237+2T>A	.	ATACTTACAGAAC	.	98	44	74	0	.	0	0	0	0	0	T	20376740	A	T	20376740	5	4	62	1	0	0	0	0	0	0	1	0	11703	405	14	5	531	5	PDILT	16	20376740	Splice_Site	SNP	A	TCGA-PK-A5HB-01A-11D-A29I-10	492925	20376740	69978013	1099	13090										
PDILT	204474	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr16	20396090	20396090	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gtccactttgccaaagccgaTcccattcttgcctttgccca	6	16	1	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PDILT-153	NM_174924	exon3	c.A286T	p.I96F	AGCCGATCCCATT	.	120	45	87	0	.	0	0	0	0	0	A	20396090	T	A	20396090	3	1	62	1	0	0	0	0	1	0	0	0	11703	1435	50	5	1508	5	PDILT	16	20396090	Missense_Mutation	SNP	T	TCGA-PK-A5HB-01A-11D-A29I-10	19350	20396090	69958663	1100	13091										
VWA3A	146177	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr16	22135022	22135022	+	Frame_Shift_Del	DEL	A	A	-													0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	aatctggggcacagtctgtgAaaaaaggtacctttcttaag					novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	VWA3A-1	NM_173615	exon16	c.1526delA	p.E509fs	TCTGTGAAAAAAG	.	118	36	85	0	.	0	0	0	0	0	-	22135022	A	-	22135022	7	5	62	1	0	1	0	1	0	0	0	0	17278	246	9	0	1588	0	VWA3A	16	22135022	Frame_Shift_Del	DEL	A	TCGA-PK-A5HB-01A-11D-A29I-10	1738932	22135022	68219731	1101	13092										
COG7	91949	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	23424846	23424846	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	tggtccagtttgcacttcttTcgtatggactggagagtgct	12	8	1	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	COG7-90	NM_153603	exon10	c.A1332G	p.R444R	CTTCTTTCGTATG	.	210	93	165	2	.	53	18	35	0	0	C	23424846	T	C	23424846	2	2	62	1	0	0	0	0	0	0	0	1	3669	1770	62	4		4	COG7	16	23424846	Silent	SNP	T	TCGA-PK-A5HB-01A-11D-A29I-10	1289824	23424846	66929907	1102	13093										
GGA2	23062	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr16	23481455	23481455	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	agcagaattctgaatccattCcggtcatacacaatgagagg	9	9	2	3	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	GGA2-91	NM_015044	exon15	c.G1482A	p.R494R	TCCATTCCGGTCA	.	94	36	83	0	.	81	35	46	0	0	T	23481455	C	T	23481455	2	4	62	1	0	0	0	0	0	0	0	1	6373	842	30	3		3	GGA2	16	23481455	Silent	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	56609	23481455	66873298	1103	13094										
EARS2	124454	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr16	23555852	23555852	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	taccggggcgtctggtggttCcgcaaggcctccttcttcag	13	13	3	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	EARS2-90	NM_001083614	exon3	c.G468A	p.R156R	GTGGTTCCGCAAG	.	25	10	22	0	.	23	10	13	0	0	T	23555852	C	T	23555852	2	4	62	1	0	0	0	0	0	0	0	1	4889	842	30	3		3	EARS2	16	23555852	Silent	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	74397	23555852	66798901	1104	13095										
EARS2	124454	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr16	23555917	23555917	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gaaacaggggtaagcagctcCggtcttcagcagcgcttctg	13	11	3	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	EARS2-90	NM_001083614	exon3	c.G403A	p.G135R	CAGCTCCGGTCTT	.	46	25	36	0	.	31	24	7	0	0	T	23555917	C	T	23555917	3	4	62	1	0	0	0	0	1	0	0	0	4889	661	23	1	1196	1	EARS2	16	23555917	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	65	23555917	66798836	1105	13096										
ERN2	10595	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	23706207	23706207	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gcccaggccctggctgtcagGcccggtgatgagaatatttc	13	12	1	2	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ERN2-322	NM_033266	exon17	c.C2086T	p.P696S	TGTCAGGCCCGGT	.	112	55	103	1	.	0	0	0	0	0	A	23706207	G	A	23706207	3	1	62	1	0	0	0	0	1	0	0	0	5251	1203	42	3	862	3	ERN2	16	23706207	Missense_Mutation	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	150290	23706207	66648546	1106	13097										
IL21R	50615	ucsc.edu;bcgsc.ca	37	chr16	27460153	27460153	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	agatgcagaggggccatgcaCctggccctgcagctgtgagg	16	11	0	3	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	IL21R-660	NM_181079	exon10	c.C1232G	p.T411S	CATGCACCTGGCC	.	109	49	107	2	.	0	0	0	0	0	G	27460153	C	G	27460153	3	3	62	1	0	0	0	0	1	0	0	0	7692	507	18	3	1196	3	IL21R	16	27460153	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	3753946	27460153	62894600	1107	13098										
GTF3C1	2975	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr16	27549248	27549248	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	tgcagcttcccagcatcaacCctggaggaaaagaggagcca	11	12	1	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	GTF3C1-94	NM_001520	exon4	c.G609T	p.K203N	ATCAACCCTGGAG	.	94	53	86	0	.	0	0	0	0	0	A	27549248	C	A	27549248	3	1	62	1	0	0	0	0	1	0	0	0	6893	637	22	3	5856	3	GTF3C1	16	27549248	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	89095	27549248	62805505	1108	13099										
KIAA0556	23247	ucsc.edu;bcgsc.ca;mdanderson.org	37	chr16	27761402	27761402	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	tcatcgacggggtgaacaggAcccaggatgacatgcatgtc	13	10	1	2	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	KIAA0556-141	NM_015202	exon16	c.A3121G	p.T1041A	AACAGGACCCAGG	.	169	79	140	2	.	7	4	3	0	0	G	27761402	A	G	27761402	3	3	62	1	0	0	0	0	1	0	0	0	8204	275	10	4	3183	4	KIAA0556	16	27761402	Missense_Mutation	SNP	A	TCGA-PK-A5HB-01A-11D-A29I-10	212154	27761402	62593351	1109	13100										
ATXN2L	11273	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr16	28841942	28841942	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	aactctttcctcagggagggGaagtatatccctctgcctca	9	12	4	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ATXN2L-92	NM_148414	exon9	c.G1041A	p.G347G	GGAGGGGAAGTAT	.	68	38	55	0	.	0	0	0	0	0	A	28841942	G	A	28841942	2	1	62	1	0	0	0	0	0	0	0	1	1213	1161	41	3		3	ATXN2L	16	28841942	Silent	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	1080540	28841942	61512811	1110	13101										
ATXN2L	11273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr16	28848085	28848085	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ccagcagctccccttccaccCcccggggaactgaagattgt	9	17	0	2	rs188659783		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ATXN2L-92	NM_017492	exon23	c.C3176T	p.P1059L	TCCACCCCCCGGG	.	108	53	61	0	C|0.999;T|0.000	132	73	59	0	0	T	28848085	C	T	28848085	3	4	62	1	0	0	0	0	1	0	0	0	1213	623	22	3	3514	3	ATXN2L	16	28848085	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	6143	28848085	61506668	1111	13102										
ATP2A1	487	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	28913320	28913320	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	cttctccaccatcgtagctgCtgtggaggagggccgcgcca	13	14	1	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ATP2A1-93	NM_004320	exon16	c.C2237T	p.A746V	TAGCTGCTGTGGA	.	290	118	231	3	.	2	2	0	0	0	T	28913320	C	T	28913320	3	4	62	1	0	0	0	0	1	0	0	0	1137	797	28	3	2299	3	ATP2A1	16	28913320	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	65235	28913320	61441433	1112	13103										
CD19	930	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr16	28943679	28943679	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ctccacagagggagataacgCtgtgctgcagtgcctcaagg	13	11	1	2	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CD19-92	NM_001178098	exon2	c.C101T	p.A34V	ATAACGCTGTGCT	.	92	48	58	0	.	0	0	0	0	0	T	28943679	C	T	28943679	3	4	62	1	0	0	0	0	1	0	0	0	2979	797	28	3	107	3	CD19	16	28943679	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	30359	28943679	61411074	1113	13104										
CD19	930	ucsc.edu;bcgsc.ca	37	chr16	28946768	28946768	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	tagccccttccccctagtacTatggcactggctgctgagga	10	14	0	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CD19-92	NM_001178098	exon5	c.T839C	p.L280P	TAGTACTATGGCA	.	160	79	125	2	.	0	0	0	0	0	C	28946768	T	C	28946768	3	2	62	1	0	0	0	0	1	0	0	0	2979	1522	53	4	857	4	CD19	16	28946768	Missense_Mutation	SNP	T	TCGA-PK-A5HB-01A-11D-A29I-10	3089	28946768	61407985	1114	13105										
TAOK2	9344	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr16	29994580	29994580	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ggaggaagaaggccctgaagCccgggagatggccatgatgc	17	9	0	4	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TAOK2-521	NM_004783	exon12	c.C1187T	p.A396V	CTGAAGCCCGGGA	.	45	19	49	0	.	47	24	23	0	0	T	29994580	C	T	29994580	3	4	62	1	0	0	0	0	1	0	0	0	15585	739	26	3	1229	3	TAOK2	16	29994580	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	1047812	29994580	60360173	1115	13106			2	59		6	6	8072	N	C_A	5.057038e-05
TAOK2	9344	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr16	29994973	29994973	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gaccactttgccaccatccgAaccgcctccctggtgagtgt	9	16	0	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TAOK2-521	NM_004783	exon13	c.A1410G	p.R470R	CATCCGAACCGCC	.	57	27	55	0	.	0	0	0	0	0	G	29994973	A	G	29994973	2	3	62	1	0	0	0	0	0	0	0	1	15585	233	9	4		4	TAOK2	16	29994973	Silent	SNP	A	TCGA-PK-A5HB-01A-11D-A29I-10	393	29994973	60359780	1116	13107			2	59		6	6	8072	N	C_A	5.057038e-05
TAOK2	9344	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr16	30002105	30002105	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	tggttgttcatcttccccagCtgcggcttgatgagacccag	11	12	2	2	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TAOK2-521	NM_004783	exon18	c.C2446A	p.L816M	CCCCAGCTGCGGC	.	22	10	41	1	.	2	2	0	0	0	A	30002105	C	A	30002105	3	1	62	1	0	0	0	0	1	0	0	0	15585	811	28	3	3988	3	TAOK2	16	30002105	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	7132	30002105	60352648	1117	13108			2	59		6	6	8072	N	C_A	5.057038e-05
TAOK2	9344	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr16	30002194	30002194	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ctgctcaacgcttaccagagCaagatcaagatccgcacaga	8	13	2	4	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TAOK2-521	NM_004783	exon18	c.C2535T	p.S845S	CCAGAGCAAGATC	.	71	28	71	0	.	40	22	18	0	0	T	30002194	C	T	30002194	2	4	62	1	0	0	0	0	0	0	0	1	15585	709	25	3		3	TAOK2	16	30002194	Silent	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	89	30002194	60352559	1118	13109			2	59		6	6	8072	N	C_A	5.057038e-05
TAOK2	9344	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr16	30002536	30002536	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	aagctgctgcccagggctatCctgctccaccccctgcccca	8	20	0	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TAOK2-521	NM_004783	exon19	c.C2797T	p.P933S	GGCTATCCTGCTC	.	160	61	94	0	.	46	20	26	0	0	T	30002536	C	T	30002536	3	4	62	1	0	0	0	0	1	0	0	0	15585	855	30	3	4343	3	TAOK2	16	30002536	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	342	30002536	60352217	1119	13110			2	59		6	6	8072	N	C_A	5.057038e-05
TAOK2	9344	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr16	30002651	30002651	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	tccagcctggcgtcagccgtCtctgctggctcccccaggcc	11	19	2	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TAOK2-521	NM_004783	exon19	c.C2912T	p.S971F	AGCCGTCTCTGCT	.	102	45	45	0	.	39	17	22	0	0	T	30002651	C	T	30002651	3	4	62	1	0	0	0	0	1	0	0	0	15585	913	32	3	4458	3	TAOK2	16	30002651	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	115	30002651	60352102	1120	13111			2	59		6	6	8072	N	C_A	5.057038e-05
TBC1D10B	26000	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr16	30369775	30369775	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	cgctcctcgtggatggcccgGgacccatgcagtcgccgtga	14	15	0	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	.	NM_015527	exon9	c.C1917T	p.S639S	GGCCCGGGACCCA	.	94	45	45	0	.	56	27	29	0	0	A	30369775	G	A	30369775	2	1	62	1	0	0	0	0	0	0	0	1	15636	1219	43	3		3	TBC1D10B	16	30369775	Silent	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	367124	30369775	59984978	1121	13112										
ZNF771	51333	hgsc.bcm.edu	37	chr16	30429083	30429083	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gccgcacgcacacgggcgagCggccctacgagtgccccgag	15	17	0	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	.	NM_001142305	exon3	c.C349T	p.R117W	GGCGAGCGGCCCT	.	7	5	0	0	.	3	2	1	0	0	T	30429083	C	T	30429083	3	4	62	1	0	0	0	0	1	0	0	0	18181	759	27	1	355	1	ZNF771	16	30429083	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	59308	30429083	59925670	1122	13113										
ZNF785	146540	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr16	30594019	30594019	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	tcgctgcaggagcggtggatCcaccgatgggcttccagggc	16	12	0	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ZNF785-91	NM_152458	exon3	c.G1080A	p.W360X	GTGGATCCACCGA	.	102	40	77	0	.	8	0	8	0	0	T	30594019	C	T	30594019	4	4	62	1	0	0	0	0	0	1	0	0	18194	856	30	3	141	3	ZNF785	16	30594019	Nonsense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	164936	30594019	59760734	1123	13114										
SRCAP	10847	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr16	30745920	30745920	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gactgtggccagcaagcagaCtcatattctggagcaggtaa	12	9	2	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SRCAP-94	NM_006662	exon31	c.C6713T	p.T2238I	AGCAGACTCATAT	.	204	87	171	0	.	16	8	8	0	0	T	30745920	C	T	30745920	3	4	62	1	0	0	0	0	1	0	0	0	15172	565	20	3	6827	3	SRCAP	16	30745920	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	151901	30745920	59608833	1124	13115										
ORAI3	93129	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr16	30964661	30964661	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	cacattgaagctgtgagcaaCatccacaacctcaactctgt	6	13	2	2	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ORAI3-68	NM_152288	exon2	c.C384T	p.N128N	GAGCAACATCCAC	.	199	70	172	0	.	74	55	19	0	0	T	30964661	C	T	30964661	2	4	62	1	0	0	0	0	0	0	0	1	11288	477	17	3		3	ORAI3	16	30964661	Silent	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	218741	30964661	59390092	1125	13116										
SETD1A	9739	bcgsc.ca	37	chr16	30990658	30990658	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	agccccggagccccctccagCcacaccgccgcaggccaagt	10	21	0	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SETD1A-93	NM_014712	exon14	c.C3551T	p.A1184V	CTCCAGCCACACC	.	148	71	38	1	.	19	9	10	0	0	T	30990658	C	T	30990658	3	4	62	1	0	0	0	0	1	0	0	0	14165	739	26	3	3601	3	SETD1A	16	30990658	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	25997	30990658	59364095	1126	13117										
ZNF668	79759	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr16	31072498	31072498	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	catgcttgcgcaagtcgctgGcactcaagaaggccttggga	13	11	1	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ZNF668-585	NM_001172669	exon4	c.C1820G	p.A607G	TCGCTGGCACTCA	.	155	64	93	0	.	16	13	3	0	0	C	31072498	G	C	31072498	3	2	62	1	0	0	0	0	1	0	0	0	18112	1203	42	3	112	3	ZNF668	16	31072498	Missense_Mutation	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	81840	31072498	59282255	1127	13118										
ITGAX	3687	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr16	31371245	31371245	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	tgtgtgcttctcccagttttCcctgatgcagttctccaaca	7	13	2	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ITGAX-229	NM_000887	exon7	c.C566T	p.S189F	AGTTTTCCCTGAT	.	81	40	65	0	.	0	0	0	0	0	T	31371245	C	T	31371245	3	4	62	1	0	0	0	0	1	0	0	0	7910	855	30	3	592	3	ITGAX	16	31371245	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	298747	31371245	58983508	1128	13119										
ARMC5	79798	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr16	31471222	31471222	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	tacgccgccagtgcgcctgcGcaagacgctggacttggcgc	14	15	0	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ARMC5-24	NM_024742	exon1	c.G377T	p.R126L	GCCTGCGCAAGAC	.	53	24	31	0	.	2	2	0	0	0	T	31471222	G	T	31471222	3	4	62	1	0	0	0	0	1	0	0	0	955	1087	38	2	379	2	ARMC5	16	31471222	Missense_Mutation	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	99977	31471222	58883531	1129	13120										
ARMC5	79798	broad.mit.edu	37	chr16	31477963	31477963	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ggaggaggagctggaagaggCcgtgggccgcatccacctgg	19	10	0	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ARMC5-24	NM_001105247	exon6	c.C2561T	p.A854V	AAGAGGCCGTGGG	.	197	8	53	1	.	12	12	0	0	0	T	31477963	C	T	31477963	3	4	62	1	0	0	0	0	1	0	0	0	955	739	26	3	2897	3	ARMC5	16	31477963	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	6741	31477963	58876790	1130	13121										
PHKB	5257	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr16	47581450	47581450	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	taataatggcagcacagagcTacattcgaggtaatttgctg	10	7	0	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PHKB-154	NM_000293	exon7	c.T701G	p.L234R	CAGAGCTACATTC	.	66	29	59	0	.	0	0	0	0	0	G	47581450	T	G	47581450	3	3	62	1	0	0	0	0	1	0	0	0	11874	1522	53	5	786	5	PHKB	16	47581450	Missense_Mutation	SNP	T	TCGA-PK-A5HB-01A-11D-A29I-10	16103487	47581450	42773303	1131	13122										
BRD7	29117	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr16	50368679	50368679	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	cttcggcatctccagagtccTctctctctctctgccagcag	7	17	4	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	BRD7-90	NM_013263	exon7	c.A830G	p.E277G	GAGTCCTCTCTCT	.	61	25	66	1	.	74	50	24	0	0	C	50368679	T	C	50368679	3	2	62	1	0	0	0	0	1	0	0	0	1508	1551	54	4	1172	4	BRD7	16	50368679	Missense_Mutation	SNP	T	TCGA-PK-A5HB-01A-11D-A29I-10	2787229	50368679	39986074	1132	13123										
SALL1	6299	hgsc.bcm.edu	37	chr16	51175655	51175656	+	In_Frame_Ins	INS	-	-	GCTGCT													0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gaggagctgccgccgccgccINSgctgctgctgctgctgctgc					rs113614842	byfrequency	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SALL1-98	NM_002968	exon2	c.478_479insAGCAGC	p.G160delinsSSG	CGCCGCCGCTGCT	.	165	0	80	0	-|0.500;GCC|0.250;GCT|0.250	0	0	0	0	0	GCTGCT	51175656	-	GCTGCT	51175655	7	5	62	1	0	1	1	0	0	0	0	0	13845	652	23	0	3504	0	SALL1	16	51175655	In_Frame_Ins	INS	-	TCGA-PK-A5HB-01A-11D-A29I-10	806976	51175655	39179098	1133	13124										
NLRC5	84166	broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr16	57060004	57060004	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	aatcacttcttcagcgcccaGccatcgcgggagggggccct	12	15	3	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	NLRC5-159	NM_032206	exon5	c.G1149A	p.Q383Q	CGCCCAGCCATCG	.	31	27	51	1	.	4	0	4	0	0	A	57060004	G	A	57060004	2	1	62	1	0	0	0	0	0	0	0	1	10499	962	34	3		3	NLRC5	16	57060004	Silent	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	5884349	57060004	33294749	1134	13125										
NLRC5	84166	broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr16	57060099	57060099	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gtgccaagtcgcctgtctctGcctccaccatctgcttcctg	8	17	2	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	NLRC5-159	NM_032206	exon5	c.G1244A	p.C415Y	GTCTCTGCCTCCA	.	28	20	49	1	.	4	0	4	0	0	A	57060099	G	A	57060099	3	1	62	1	0	0	0	0	1	0	0	0	10499	1319	46	3	1258	3	NLRC5	16	57060099	Missense_Mutation	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	95	57060099	33294654	1135	13126										
NLRC5	84166	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	57089359	57089359	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gtccagcaggttcacaggctGcagcctcagccaggagcacg	13	14	2	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	NLRC5-159	NM_032206	exon26	c.G3674A	p.C1225Y	CAGGCTGCAGCCT	.	103	87	138	1	.	4	2	2	0	0	A	57089359	G	A	57089359	3	1	62	1	0	0	0	0	1	0	0	0	10499	1319	46	3	3772	3	NLRC5	16	57089359	Missense_Mutation	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	29260	57089359	33265394	1136	13127										
CNGB1	1258	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	chr16	57993956	57993956	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ttgggccccatttcctggggGcgtcctggaggcgctaagca	15	12	0	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CNGB1-137	NM_001297	exon10	c.C597T	p.R199R	CTGGGGGCGTCCT	.	9	7	14	0	.	0	0	0	0	0	A	57993956	G	A	57993956	2	1	62	1	0	0	0	0	0	0	0	1	3606	1190	42	3		3	CNGB1	16	57993956	Silent	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	904597	57993956	32360797	1137	13128										
CDH16	1014	ucsc.edu;bcgsc.ca	37	chr16	66950187	66950187	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ccagccatacctgtagctggTactctgcctgctcctctcgg	9	16	2	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CDH16-93	NM_004062	exon4	c.A275T	p.Y92F	AGCTGGTACTCTG	.	126	101	156	2	.	0	0	0	0	0	A	66950187	T	A	66950187	3	1	62	1	0	0	0	0	1	0	0	0	3107	1638	57	5	2274	5	CDH16	16	66950187	Missense_Mutation	SNP	T	TCGA-PK-A5HB-01A-11D-A29I-10	8956231	66950187	23404566	1138	13129										
SLC12A4	6560	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr16	67980895	67980895	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	agaagctcccctggatgacaGaaccaacaatggtcaggccc	10	13	1	3	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SLC12A4-91	NM_001145962	exon16	c.C2192T	p.S731F	ATGACAGAACCAA	.	62	48	83	2	.	20	5	15	0	0	A	67980895	G	A	67980895	3	1	62	1	0	0	0	0	1	0	0	0	14420	942	33	3	1103	3	SLC12A4	16	67980895	Missense_Mutation	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	1030708	67980895	22373858	1139	13130										
FUK	197258	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr16	70503129	70503129	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gacttcctggtggggaggccCccagagttggggcaaggcga	18	10	0	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	FUK-91	NM_145059	exon10	c.C858T	p.P286P	GAGGCCCCCAGAG	.	66	51	90	0	.	2	0	2	0	0	T	70503129	C	T	70503129	2	4	62	1	0	0	0	0	0	0	0	1	6115	610	22	3		3	FUK	16	70503129	Silent	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	2522234	70503129	19851624	1140	13131										
FUK	197258	hgsc.bcm.edu	37	chr16	70508769	70508769	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ctggctgtgcgagtggacggCcgccggcccatcggagccag	17	14	0	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	FUK-91	NM_145059	exon18	c.C2232A	p.G744G	GGACGGCCGCCGG	.	47	39	4	0	.	3	0	3	0	0	A	70508769	C	A	70508769	2	1	62	1	0	0	0	0	0	0	0	1	6115	726	26	3		3	FUK	16	70508769	Silent	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	5640	70508769	19845984	1141	13132										
ZFHX3	463	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr16	72822586	72822586	+	Frame_Shift_Del	DEL	G	G	-													0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ctgctgctgctgctgctgctGggggggttgctgagggccca					rs66799632		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ZFHX3-72	NM_006885	exon10	c.9589delC	p.Q3197fs	GCTGCTGGGGGGG	.	111	50	53	0	.	0	0	0	0	0	-	72822586	G	-	72822586	7	5	62	1	0	1	0	1	0	0	0	0	17671	1357	47	0	1526	0	ZFHX3	16	72822586	Frame_Shift_Del	DEL	G	TCGA-PK-A5HB-01A-11D-A29I-10	2313817	72822586	17532167	1142	13133										
WDR59	79726	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr16	74922199	74922199	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	agtgtctgaacatcccggagCcggcaatagtgagccaacct	11	12	1	2	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	WDR59-92	NM_030581	exon22	c.G2214T	p.R738R	CCGGAGCCGGCAA	.	130	57	105	0	.	35	17	18	0	0	A	74922199	C	A	74922199	2	1	62	1	0	0	0	0	0	0	0	1	17346	726	26	3		3	WDR59	16	74922199	Silent	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	2099613	74922199	15432554	1143	13134										
ZFP1	162239	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr16	75200759	75200759	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gaggatcctatacatggatgTgatgctggagaattatagca	12	5	0	2	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ZFP1-92	NM_153688	exon3	c.T107G	p.V36G	TGGATGTGATGCT	.	167	56	130	0	.	12	7	5	0	0	G	75200759	T	G	75200759	3	3	62	1	0	0	0	0	1	0	0	0	17673	1696	59	5	113	5	ZFP1	16	75200759	Missense_Mutation	SNP	T	TCGA-PK-A5HB-01A-11D-A29I-10	278560	75200759	15153994	1144	13135										
CHST6	4166	hgsc.bcm.edu	37	chr16	75513043	75513043	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gcctccacccacgtgccgttGgtgcccagcacgatgccgtt	11	17	0	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CHST6-90	NM_021615	exon3	c.C684A	p.T228T	GCCGTTGGTGCCC	.	98	42	0	0	.	0	0	0	0	0	T	75513043	G	T	75513043	2	4	62	1	0	0	0	0	0	0	0	1	3414	1335	47	3		3	CHST6	16	75513043	Silent	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	312284	75513043	14841710	1145	13136										
PKD1L2	114780	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	81181855	81181855	+	RNA	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gttctgctccttcgcgacccGgggacgggtgttctgaaaga	14	11	2	2	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PKD1L2-92	.	.	.	.	CGACCCGGGGACG	.	106	50	90	1	.	0	0	0	0	0	A	81181855	G	A	81181855	1	1	62	0	1	0	0	0	0	0	0	0	11994	1115	39	1		1	PKD1L2	16	81181855	RNA	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	5668812	81181855	9172898	1146	13137										
ADAD2	161931	hgsc.bcm.edu	37	chr16	84224967	84224967	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ccaggcccaaagtgcctgggGgcccgcgcccgcgcccgcga	15	19	0	0	rs8044695	byfrequency	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ADAD2-68	NM_001145400	exon1	c.G131A	p.G44E	CCTGGGGGCCCGC	.	17	16	0	0	G|0.292;A|0.708	0	0	0	0	0	A	84224967	G	A	84224967	3	1	62	1	0	0	0	0	1	0	0	0	232	1232	43	3	133	3	ADAD2	16	84224967	Missense_Mutation	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	3043112	84224967	6129786	1147	13138										
ZCCHC14	23174	hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	chr16	87445168	87445168	+	Missense_Mutation	SNP	G	G	T													0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	tgtttgcagtcctgggcgcgGtgaccagtggccccgcagtt					novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ZCCHC14-154	NM_015144	exon12	c.C2748A	p.H916Q	GGCGCGGTGACCA	.	117	51	131	0	.	12	12	0	0	0	T	87445168	G	T	87445168	3	4	62	1	0	0	0	0	1	0	0	0	17620	1252	44	3	109	3	ZCCHC14	16	87445168	Missense_Mutation	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	3220201	87445168	2909585	1148	13139	145	3								
ZCCHC14	23174	hgsc.bcm.edu;ucsc.edu	37	chr16	87445172	87445173	+	Missense_Mutation	DNP	CC	CC	TT													0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	tgcagtcctgggcgcggtgaCcagtggccccgcagttgtaa					novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	CC	CC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ZCCHC14-154	NM_015144	exon12	c.G2743A	p.G915N	GGTGACCAGTGGC	.	120	18	138	0	.	0	0	0	0	0	TT	87445173	CC	TT	87445172	3	4	62	1	0	0	0	0	1	0	0	0	17620	507	18	3	113	3	ZCCHC14	16	87445172	Missense_Mutation	DNP	CC	TCGA-PK-A5HB-01A-11D-A29I-10	4	87445172	2909581	1149	13140	145	3								
ZCCHC14	23174	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr16	87445179	87445179	+	Missense_Mutation	SNP	C	C	A													0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ctgggcgcggtgaccagtggCcccgcagttgtaacaagata					novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ZCCHC14-154	NM_015144	exon12	c.G2737T	p.A913S	CAGTGGCCCCGCA	.	131	61	140	0	.	10	10	0	0	0	A	87445179	C	A	87445179	3	1	62	1	0	0	0	0	1	0	0	0	17620	739	26	3	120	3	ZCCHC14	16	87445179	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	7	87445179	2909574	1150	13141	145	3								
ZFPM1	161882	hgsc.bcm.edu	37	chr16	88599696	88599697	+	Frame_Shift_Del	DEL	GA	GA	-													0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ccaacggagaggccagagcgGagcctctggcccagaatgga					rs67549438	alternate_allele	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	GA	GA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ZFPM1-90	NM_153813	exon10	c.1330_1331del	p.444_444del	AGAGCGGAGCCTC	.	31	24	0	0	.	0	0	0	0	0	-	88599697	GA	-	88599696	7	5	62	1	0	1	0	1	0	0	0	0	17694	1175	41	0	1368	0	ZFPM1	16	88599696	Frame_Shift_Del	DEL	GA	TCGA-PK-A5HB-01A-11D-A29I-10	1154517	88599696	1755057	1151	13142	146	4								
ZFPM1	161882	hgsc.bcm.edu	37	chr16	88599697	88599705	+	In_Frame_Del	DEL	AGCCTCTGG	AGCCTCTGG	-													0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	caacggagaggccagagcggAgcctctggcccagaatggag					novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	AGCCTCTGG	AGCCTCTGG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ZFPM1-90	NM_153813	exon10	c.1331_1339del	p.444_447del	GAGCGGAGCCTCT	.	30	0	0	0	.	0	0	0	0	0	-	88599705	AGCCTCTGG	-	88599697	7	5	62	1	0	1	0	1	0	0	0	0	17694	304	11	0	1369	0	ZFPM1	16	88599697	In_Frame_Del	DEL	AGCCTCTGG	TCGA-PK-A5HB-01A-11D-A29I-10	1	88599697	1755056	1152	13143	146	4								
ZFPM1	161882	hgsc.bcm.edu	37	chr16	88599701	88599701	+	Frame_Shift_Del	DEL	T	T	-													0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ggagaggccagagcggagccTctggcccagaatggaggcag					novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ZFPM1-90	NM_153813	exon10	c.1335delT	p.P445fs	GGAGCCTCTGGCC	.	27	19	0	0	.	0	0	0	0	0	-	88599701	T	-	88599701	7	5	62	1	0	1	0	1	0	0	0	0	17694	1538	54	0	1373	0	ZFPM1	16	88599701	Frame_Shift_Del	DEL	T	TCGA-PK-A5HB-01A-11D-A29I-10	4	88599701	1755052	1153	13144	146	4								
ZFPM1	161882	hgsc.bcm.edu	37	chr16	88599703	88599705	+	In_Frame_Del	DEL	TGG	TGG	-													0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	agaggccagagcggagcctcTggcccagaatggaggcagca					novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	TGG	TGG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ZFPM1-90	NM_153813	exon10	c.1337_1339del	p.446_447del	AGCCTCTGGCCCA	.	25	19	0	0	.	0	0	0	0	0	-	88599705	TGG	-	88599703	7	5	62	1	0	1	0	1	0	0	0	0	17694	1580	55	0	1375	0	ZFPM1	16	88599703	In_Frame_Del	DEL	TGG	TCGA-PK-A5HB-01A-11D-A29I-10	2	88599703	1755050	1154	13145	146	4								
GALNS	2588	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr16	88909119	88909119	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gccccgctgacttacatggcGagcacagagggttggcagaa	14	11	0	3	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	GALNS-153	NM_000512	exon2	c.C239T	p.S80L	CATGGCGAGCACA	.	111	58	62	0	.	2	0	2	0	0	A	88909119	G	A	88909119	3	1	62	1	0	0	0	0	1	0	0	0	6226	1059	37	1	1381	1	GALNS	16	88909119	Missense_Mutation	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	309416	88909119	1445634	1155	13146										
CPNE7	27132	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr16	89653121	89653121	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	caaatacaagcagaagagacGcagttataagaactcaggag	10	7	1	3	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CPNE7-90	NM_014427	exon10	c.G1049A	p.R350H	AGAGACGCAGTTA	.	119	49	79	0	.	1	0	1	0	0	A	89653121	G	A	89653121	3	1	62	1	0	0	0	0	1	0	0	0	3823	1087	38	1	1087	1	CPNE7	16	89653121	Missense_Mutation	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	744002	89653121	701632	1156	13147										
C17orf97	400566	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr17	260403	260405	+	In_Frame_Del	DEL	GAA	GAA	-													0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	aaggtgaagaagaaaaaaagGaagaagaagaccaaggggtc					novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	GAA	GAA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	C17orf97-91	NM_001013672	exon1	c.270_272del	p.90_91del	AAAAAGGAAGAAG	.	20	15	19	0	.	0	0	0	0	0	-	260405	GAA	-	260403	7	5	62	1	0	1	0	1	0	0	0	0	1898	1165	41	0	272	0	C17orf97	17	260403	In_Frame_Del	DEL	GAA	TCGA-PK-A5HB-01A-11D-A29I-10		260403	80934807	1157	13148										
SHPK	23729	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr17	3518689	3518689	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gtggccagcacattgcccccGttgagtgacgcggccacccc	12	17	0	2	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SHPK-69	NM_013276	exon6	c.C966T	p.N322N	GCCCCCGTTGAGT	.	156	121	215	0	.	1	1	0	0	0	A	3518689	G	A	3518689	2	1	62	1	0	0	0	0	0	0	0	1	14325	1136	40	1		1	SHPK	17	3518689	Silent	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	3258286	3518689	77676521	1158	13149										
GLTPD2	388323	hgsc.bcm.edu	37	chr17	4693342	4693342	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ggcgcgctgggaggcccggaCgcgggcgtgcagtgcagcga	21	12	0	0	rs35910358		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	GLTPD2-68	NM_001014985	exon4	c.C627A	p.D209E	CCCGGACGCGGGC	.	6	6	0	0	C|0.015;A|0.985	0	0	0	0	0	A	4693342	C	A	4693342	3	1	62	1	0	0	0	0	1	0	0	0	6493	535	19	2	641	2	GLTPD2	17	4693342	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	1174653	4693342	76501868	1159	13150										
NLGN2	57555	broad.mit.edu;bcgsc.ca	37	chr17	7311947	7311947	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	tgctgcctgtgtggttcaccGacaacttggaggcggccgcc	14	13	1	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	NLGN2-90	NM_020795	exon1	c.G373A	p.D125N	TTCACCGACAACT	.	88	71	102	1	.	5	1	4	0	0	A	7311947	G	A	7311947	3	1	62	1	0	0	0	0	1	0	0	0	10491	1058	37	1	375	1	NLGN2	17	7311947	Missense_Mutation	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	2618605	7311947	73883263	1160	13151										
C17orf74	201243	broad.mit.edu	37	chr17	7329040	7329040	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ctatggcataacaccgtgagAtgttgcaatcaataccaaga	8	9	1	2	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	C17orf74-90	NM_175734	exon1	c.A33G	p.R11R	CGTGAGATGTTGC	.	87	4	106	0	.	3	3	0	0	0	G	7329040	A	G	7329040	2	3	62	1	0	0	0	0	0	0	0	1	1884	330	12	4		4	C17orf74	17	7329040	Silent	SNP	A	TCGA-PK-A5HB-01A-11D-A29I-10	17093	7329040	73866170	1161	13152										
TMEM102	284114	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr17	7339882	7339882	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ctctgtagaccagccgcacaGctacgtcactgagcacgagg	11	14	2	2	rs141257669	alternate_allele	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TMEM102-90	NM_178518	exon3	c.G584A	p.S195N	CGCACAGCTACGT	.	121	9	144	0	G|1.000;T|0.000	1	1	0	0	0	A	7339882	G	A	7339882	3	1	62	1	0	0	0	0	1	0	0	0	16054	971	34	3	590	3	TMEM102	17	7339882	Missense_Mutation	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	10842	7339882	73855328	1162	13153										
TP53	7157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	7577018	7577018	+	Splice_Site	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	cttcttgtcctgcttgcttaCctcgcttagtgctccctggg	9	14	1	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TP53-70225	NM_000546	exon9	c.919+1G>T	.	TGCTTACCTCGCT	.	67	58	105	0	.	7	0	7	0	0	A	7577018	C	A	7577018	5	1	62	1	0	0	0	0	0	0	1	0	16419	521	18	3	366	3	TP53	17	7577018	Splice_Site	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	237136	7577018	73618192	1163	13154										
GUCY2D	3000	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	7919549	7919549	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ggcgccgaggacactttctgGctagtgggcagacgcggctt	16	11	1	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	GUCY2D-319	NM_000180	exon18	c.G3165C	p.W1055C	TTTCTGGCTAGTG	.	65	41	102	1	.	0	0	0	0	0	C	7919549	G	C	7919549	3	2	62	1	0	0	0	0	1	0	0	0	6918	1212	42	3	3231	3	GUCY2D	17	7919549	Missense_Mutation	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	342531	7919549	73275661	1164	13155										
ALOXE3	59344	broad.mit.edu;bcgsc.ca	37	chr17	8013790	8013790	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	tactgctggcggccgtttagGcagtgggtgggggcctccgc	18	11	0	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ALOXE3-229	NM_001165960	exon9	c.C1410A	p.C470X	GTTTAGGCAGTGG	.	61	47	65	2	.	0	0	0	0	0	T	8013790	G	T	8013790	4	4	62	1	0	0	0	0	0	1	0	0	542	1195	42	3	1153	3	ALOXE3	17	8013790	Nonsense_Mutation	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	94241	8013790	73181420	1165	13156										
ALOXE3	59344	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	8017851	8017851	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	cgtcttggtggctgagtatcGaacattgggctccatgtaca	12	9	1	1	rs141340759		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ALOXE3-229	NM_001165960	exon6	c.C1027T	p.R343X	AGTATCGAACATT	.	159	121	275	1	.	0	0	0	0	0	A	8017851	G	A	8017851	4	1	62	1	0	0	0	0	0	1	0	0	542	1066	37	1	1548	1	ALOXE3	17	8017851	Nonsense_Mutation	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	4061	8017851	73177359	1166	13157										
ALOXE3	59344	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	8017917	8017917	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ggggaagccgggcaggtaccGattcccactgctgggggtcg	18	11	0	0	rs149284623		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ALOXE3-229	NM_001165960	exon6	c.C961T	p.R321W	GGTACCGATTCCC	.	57	42	126	0	G|1.000;A|0.000	0	0	0	0	0	A	8017917	G	A	8017917	3	1	62	1	0	0	0	0	1	0	0	0	542	1057	37	1	1614	1	ALOXE3	17	8017917	Missense_Mutation	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	66	8017917	73177293	1167	13158										
PIK3R5	23533	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr17	8783988	8783988	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	tccactgaaagtcatgatggGcaggcagagaagggagcaga	15	7	1	4	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PIK3R5-1146	NM_001142633	exon19	c.C2611T	p.P871S	TGATGGGCAGGCA	.	57	44	67	0	.	0	0	0	0	0	A	8783988	G	A	8783988	3	1	62	1	0	0	0	0	1	0	0	0	11951	1203	42	3	35	3	PIK3R5	17	8783988	Missense_Mutation	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	766071	8783988	72411222	1168	13159										
MYH13	8735	ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	10213064	10213064	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	atttcttcatccttctcaatGaccttgcggtctagctcgga	7	12	4	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	MYH13-6	NM_003802	exon34	c.C4740T	p.V1580V	CTCAATGACCTTG	.	67	48	127	2	.	0	0	0	0	0	A	10213064	G	A	10213064	2	1	62	1	0	0	0	0	0	0	0	1	10060	1277	45	3		3	MYH13	17	10213064	Silent	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	1429076	10213064	70982146	1169	13160										
DNAH9	1770	bcgsc.ca	37	chr17	11607687	11607687	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	cagctctccaagggagaccgGcagaagattatgactatatg	11	9	1	4	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	DNAH9-168	NM_001372	exon25	c.G5319A	p.R1773R	AGACCGGCAGAAG	.	64	4	138	0	.	0	0	0	0	0	A	11607687	G	A	11607687	2	1	62	1	0	0	0	0	0	0	0	1	4619	1190	42	3		3	DNAH9	17	11607687	Silent	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	1394623	11607687	69587523	1170	13161										
TRPV2	51393	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	16336945	16336945	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ggtggtgcaggaagaagcagCgggcaggtgtgatgctgacc	19	7	0	3	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TRPV2-91	NM_016113	exon13	c.C2047T	p.R683W	AAGCAGCGGGCAG	.	88	68	133	0	.	92	9	83	0	0	T	16336945	C	T	16336945	3	4	62	1	0	0	0	0	1	0	0	0	16634	759	27	1	2093	1	TRPV2	17	16336945	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	4729258	16336945	64858265	1171	13162										
CCDC144A	9720	hgsc.bcm.edu	37	chr17	16630989	16630989	+	Frame_Shift_Del	DEL	A	A	-													0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	caaaatgagctatctgaaacAaaaaagacaaaattacagtt					novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	.	NM_014695	exon9	c.2040delA	p.T680fs	TGAAACAAAAAAG	.	442	104	638	0	.	0	0	0	0	0	-	16630989	A	-	16630989	7	5	62	1	0	1	0	1	0	0	0	0	2783	117	5	0	2074	0	CCDC144A	17	16630989	Frame_Shift_Del	DEL	A	TCGA-PK-A5HB-01A-11D-A29I-10	294044	16630989	64564221	1172	13163										
MYO15A	51168	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	18022386	18022386	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	aaagctcatgacgcagatgcGcatgggcaagaagaagcggg	15	8	1	4	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	MYO15A-97	NM_016239	exon2	c.G272A	p.R91H	AGATGCGCATGGG	.	161	123	137	0	.	0	0	0	0	0	A	18022386	G	A	18022386	3	1	62	1	0	0	0	0	1	0	0	0	10091	1087	38	1	274	1	MYO15A	17	18022386	Missense_Mutation	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	1391397	18022386	63172824	1173	13164										
MYO15A	51168	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	18025311	18025311	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	cagcctctcatacccactggCtgcgtgtgaccagaccaggg	11	15	1	2	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	MYO15A-97	NM_016239	exon2	c.C3197T	p.A1066V	CACTGGCTGCGTG	.	49	34	68	0	.	0	0	0	0	0	T	18025311	C	T	18025311	3	4	62	1	0	0	0	0	1	0	0	0	10091	797	28	3	3199	3	MYO15A	17	18025311	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	2925	18025311	63169899	1174	13165										
CCDC144B	284047	hgsc.bcm.edu	37	chr17	18491040	18491040	+	RNA	DEL	T	T	-													0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gttctaactgtaattttgtcTtttttgtttcagatagctca					novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CCDC144B-70	.	.	.	.	TTTGTCTTTTTTG	.	407	118	555	0	.	0	0	0	0	0	-	18491040	T	-	18491040	6	5	62	0	1	1	0	1	0	0	0	0	2784	1609	56	0		0	CCDC144B	17	18491040	RNA	DEL	T	TCGA-PK-A5HB-01A-11D-A29I-10	465729	18491040	62704170	1175	13166										
CCDC144NL	339184	ucsc.edu;bcgsc.ca	37	chr17	20799304	20799304	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ttcggagaccccccagccccTccccgcttttctccacccca	5	23	1	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CCDC144NL-90	NM_001004306	exon1	c.A30G	p.G10G	AGCCCCTCCCCGC	.	46	33	74	3	.	1	0	1	0	0	C	20799304	T	C	20799304	2	2	62	1	0	0	0	0	0	0	0	1	2785	1538	54	4		4	CCDC144NL	17	20799304	Silent	SNP	T	TCGA-PK-A5HB-01A-11D-A29I-10	2308264	20799304	60395906	1176	13167										
TMEM199	147007	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	26687565	26687565	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ttcccaggatacaagacatgGtgggactctcagcgacctgg	12	11	1	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TMEM199-68	NM_152464	exon4	c.G389A	p.G130D	GACATGGTGGGAC	.	38	33	81	1	.	16	2	14	0	0	A	26687565	G	A	26687565	3	1	62	1	0	0	0	0	1	0	0	0	16157	1261	44	3	403	3	TMEM199	17	26687565	Missense_Mutation	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	5888261	26687565	54507645	1177	13168										
RAB34	83871	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	27041696	27041696	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gggcttcttcttgctggcagTtaggtagaggttgctgtcat	14	7	3	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	RAB34-227	NM_001144943	exon11	c.A916G	p.T306A	TGGCAGTTAGGTA	.	116	94	162	1	.	14	14	0	0	0	C	27041696	T	C	27041696	3	2	62	1	0	0	0	0	1	0	0	0	12959	1725	60	4	102	4	RAB34	17	27041696	Missense_Mutation	SNP	T	TCGA-PK-A5HB-01A-11D-A29I-10	354131	27041696	54153514	1178	13169										
NF1	4763	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	29528059	29528059	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gttggggtttttatagaaccTgctttttaatccaagtaagc	9	6	0	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	NF1-3353	NM_001128147	exon10	c.T1067A	p.L356Q	AGAACCTGCTTTT	.	36	26	62	0	.	0	0	0	0	0	A	29528059	T	A	29528059	3	1	62	1	0	0	0	0	1	0	0	0	10385	1580	55	5	1105	5	NF1	17	29528059	Missense_Mutation	SNP	T	TCGA-PK-A5HB-01A-11D-A29I-10	2486363	29528059	51667151	1179	13170										
NF1	4763	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	29662047	29662047	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	aaatatggggaagccttgggCaggtattgagtttgctcaaa	13	5	1	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	NF1-3353	NM_001042492	exon40	c.C6004T	p.Q2002X	CTTGGGCAGGTAT	.	41	28	59	0	.	0	0	0	0	0	T	29662047	C	T	29662047	4	4	62	1	0	0	0	0	0	1	0	0	10385	711	25	3	6223	3	NF1	17	29662047	Nonsense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	133988	29662047	51533163	1180	13171										
RHOT1	55288	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	30535210	30535210	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ttaaacaagaatacagtattTcacctactgatttctgcagg	6	8	2	2	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	RHOT1-93	NM_001033568	exon18	c.T1621C	p.S541P	AGTATTTCACCTA	.	74	53	133	0	.	62	1	61	0	0	C	30535210	T	C	30535210	3	2	62	1	0	0	0	0	1	0	0	0	13378	1783	62	4	1691	4	RHOT1	17	30535210	Missense_Mutation	SNP	T	TCGA-PK-A5HB-01A-11D-A29I-10	873163	30535210	50660000	1181	13172										
ZNF830	91603	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	33289639	33289639	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	aagaagagaatgctgacagcGatgatgagggggaactacag	15	5	0	5	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ZNF830-89	NM_052857	exon1	c.G1054A	p.D352N	GACAGCGATGATG	.	37	27	65	0	.	13	1	12	0	0	A	33289639	G	A	33289639	3	1	62	1	0	0	0	0	1	0	0	0	18221	1058	37	1	1056	1	ZNF830	17	33289639	Missense_Mutation	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	2754429	33289639	47905571	1182	13173										
UNC45B	146862	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	33513335	33513335	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	cagacaacccagtggttggaGatcctccagcggctttgcct	11	13	0	2	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	UNC45B-157	NM_173167	exon20	c.G2553A	p.E851E	GTTGGAGATCCTC	.	70	51	118	1	.	0	0	0	0	0	A	33513335	G	A	33513335	2	1	62	1	0	0	0	0	0	0	0	1	17027	933	33	3		3	UNC45B	17	33513335	Silent	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	223696	33513335	47681875	1183	13174										
PSMB3	5691	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	36912138	36912138	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	acttttctcctacctcagtgCccagcgcctcaagttccggc	7	17	3	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PSMB3-90	NM_002795	exon3	c.C191T	p.A64V	TCAGTGCCCAGCG	.	106	78	171	0	.	0	0	0	0	0	T	36912138	C	T	36912138	3	4	62	1	0	0	0	0	1	0	0	0	12710	739	26	3	201	3	PSMB3	17	36912138	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	3398803	36912138	44283072	1184	13175										
GJD3	125111	hgsc.bcm.edu	37	chr17	38519449	38519449	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gagcaggtggcccagctcggCtacgctgagcagcgccgaca	15	14	0	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	.	NM_152219	exon1	c.G619C	p.A207P	GCTCGGCTACGCT	.	10	9	2	0	.	1	1	0	0	0	G	38519449	C	G	38519449	3	3	62	1	0	0	0	0	1	0	0	0	6438	797	28	3	269	3	GJD3	17	38519449	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	1607311	38519449	42675761	1185	13176										
KRTAP1-3	81850	broad.mit.edu;bcgsc.ca	37	chr17	39190723	39190723	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	cagcaggggggcaggcaggtAccctccacacggcagtctgg	16	13	1	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	.	NM_030966	exon1	c.T351C	p.G117G	GCAGGTACCCTCC	.	169	14	182	1	.	0	0	0	0	0	G	39190723	A	G	39190723	2	3	62	1	0	0	0	0	0	0	0	1	8524	378	14	4		4	KRTAP1-3	17	39190723	Silent	SNP	A	TCGA-PK-A5HB-01A-11D-A29I-10	671274	39190723	42004487	1186	13177										
KRTAP4-3	85290	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr17	39324164	39324164	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	cagctgggtttgcagcagctGgagatacagcaggaaggcct	15	9	0	1	rs12600645	bycluster;byfrequency;byhapmap;alternate_allele	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	KRTAP4-3-22	NM_033187	exon1	c.C261A	p.S87S	GCAGCTGGAGATA	.	308	195	279	1	G|0.750;A|0.250	0	0	0	0	0	T	39324164	G	T	39324164	2	4	62	1	0	0	0	0	0	0	0	1	8574	1335	47	3		3	KRTAP4-3	17	39324164	Silent	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	133441	39324164	41871046	1187	13178										
KRTAP9-9	81870	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	39411754	39411754	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	tgccagccctcctgctgtgtGtctagctgctgccagccttg	11	15	1	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	.	NM_030975	exon1	c.G117A	p.V39V	CTGTGTGTCTAGC	.	57	44	89	0	.	0	0	0	0	0	A	39411754	G	A	39411754	2	1	62	1	0	0	0	0	0	0	0	1	8599	1364	48	3		3	KRTAP9-9	17	39411754	Silent	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	87590	39411754	41783456	1188	13179										
JUP	3728	ucsc.edu	37	chr17	39913949	39913949	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	cgaggccccctctgcatcaaTggcgtcggccgcctccttgt	11	17	2	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	JUP-479	NM_021991	exon11	c.A1861G	p.I621V	CATCAATGGCGTC	.	132	2	152	0	.	28	23	5	0	0	C	39913949	T	C	39913949	3	2	62	1	0	0	0	0	1	0	0	0	7993	1464	51	4	392	4	JUP	17	39913949	Missense_Mutation	SNP	T	TCGA-PK-A5HB-01A-11D-A29I-10	502195	39913949	41281261	1189	13180										
TUBG1	7283	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	40767023	40767023	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gagtaccatgcggccacacgGccagactacatctcctgggg	12	14	1	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TUBG1-91	NM_001070	exon11	c.G1320A	p.R440R	CACACGGCCAGAC	.	187	154	211	0	.	37	1	36	0	0	A	40767023	G	A	40767023	2	1	62	1	0	0	0	0	0	0	0	1	16802	1190	42	3		3	TUBG1	17	40767023	Silent	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	853074	40767023	40428187	1190	13181										
ATXN7L3	56970	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	42274975	42274975	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ctgaagctcaccaaaatcctTcatgctatcagggtccgtgt	8	12	3	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ATXN7L3-68	NM_020218	exon2	c.A175C	p.K59Q	AATCCTTCATGCT	.	103	76	130	0	.	0	0	0	0	0	G	42274975	T	G	42274975	3	3	62	1	0	0	0	0	1	0	0	0	1219	1792	62	5	933	5	ATXN7L3	17	42274975	Missense_Mutation	SNP	T	TCGA-PK-A5HB-01A-11D-A29I-10	1507952	42274975	38920235	1191	13182										
SLC4A1	6521	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	42337788	42337788	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gcacctgtgtttaagcagcaGggcccggagcagctcctctc	12	14	1	0	rs55830560	alternate_allele	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SLC4A1-92	NM_000342	exon6	c.C469T	p.L157L	GCAGCAGGGCCCG	.	141	107	201	0	.	0	0	0	0	0	A	42337788	G	A	42337788	2	1	62	1	0	0	0	0	0	0	0	1	14685	991	35	3		3	SLC4A1	17	42337788	Silent	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	62813	42337788	38857422	1192	13183										
GPATCH8	23131	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr17	42475271	42475271	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	atgggggtgagggtgaatgcCgatggcggcagcagctgcgg	21	7	0	2	rs200060507		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	GPATCH8-94	NM_001002909	exon8	c.G4174A	p.G1392S	GAATGCCGATGGC	.	97	8	121	0	C|0.999;T|0.001	25	24	1	0	0	T	42475271	C	T	42475271	3	4	62	1	0	0	0	0	1	0	0	0	6614	652	23	1	338	1	GPATCH8	17	42475271	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	137483	42475271	38719939	1193	13184										
ACBD4	79777	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	43214817	43214817	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	aaggaaccggcacccccaagCccaggttagtgcttgagcag	12	13	0	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ACBD4-92	NM_001135707	exon6	c.C498G	p.S166R	CCCAAGCCCAGGT	.	53	44	106	0	.	0	0	0	0	0	G	43214817	C	G	43214817	3	3	62	1	0	0	0	0	1	0	0	0	124	738	26	3	516	3	ACBD4	17	43214817	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	739546	43214817	37980393	1194	13185										
LPO	4025	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	56344750	56344750	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ttctgtgacctctcacagccGcagacactagaggagttgaa	10	11	2	4	rs148241940	byfrequency	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	LPO-91	NM_006151	exon12	c.G1734A	p.P578P	ACAGCCGCAGACA	.	79	65	104	0	G|1.000;A|0.000	0	0	0	0	0	A	56344750	G	A	56344750	2	1	62	1	0	0	0	0	0	0	0	1	8949	1074	38	1		1	LPO	17	56344750	Silent	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	13129933	56344750	24850460	1195	13186										
BZRAP1	9256	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	56388274	56388274	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gcttgcagggggtgctcctgGaggctcttgagttccaaggg	17	9	1	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	BZRAP1-229	NM_004758	exon19	c.C3382T	p.P1128S	CTCCTGGAGGCTC	.	27	21	25	0	.	1	0	1	0	0	A	56388274	G	A	56388274	3	1	62	1	0	0	0	0	1	0	0	0	1580	1174	41	3	2243	3	BZRAP1	17	56388274	Missense_Mutation	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	43524	56388274	24806936	1196	13187										
RNF43	54894	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	56435785	56435785	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ggtacccactgcgttctgtgCaatagctttctccagatcca	8	13	2	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	RNF43-92	NM_017763	exon9	c.G1352A	p.C451Y	TCTGTGCAATAGC	.	38	28	71	0	.	0	0	0	0	0	T	56435785	C	T	56435785	3	4	62	1	0	0	0	0	1	0	0	0	13530	710	25	3	1007	3	RNF43	17	56435785	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	47511	56435785	24759425	1197	13188										
RAD51C	5889	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	56774113	56774113	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	tggaggagtggcaggtgaagCagtttttattgatacagagg	16	3	0	3	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	RAD51C-637	NM_058216	exon3	c.C464T	p.A155V	GTGAAGCAGTTTT	.	95	55	175	0	.	13	2	11	0	0	T	56774113	C	T	56774113	3	4	62	1	0	0	0	0	1	0	0	0	13023	710	25	3	478	3	RAD51C	17	56774113	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	338328	56774113	24421097	1198	13189										
KIF19	124602	bcgsc.ca	37	chr17	72340954	72340954	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ggacccaggagcccacggccGccaaccagacgtcctcccgc	11	20	0	1	rs144185563		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	KIF19-90	NM_153209	exon7	c.G637A	p.A213T	ACGGCCGCCAACC	.	147	114	115	4	G|1.000;A|0.000	0	0	0	0	0	A	72340954	G	A	72340954	3	1	62	1	0	0	0	0	1	0	0	0	8303	1087	38	1	663	1	KIF19	17	72340954	Missense_Mutation	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	15566841	72340954	8854256	1199	13190										
TSEN54	283989	hgsc.bcm.edu	37	chr17	73512884	73512884	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	aagctgccccagcgctcgcaTggccccaaggactttctgcc	10	17	1	0	rs8079373	byfrequency	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TSEN54-91	NM_207346	exon2	c.T114G	p.H38Q	CTCGCATGGCCCC	.	7	6	0	0	T|0.845;G|0.155	3	0	3	0	0	G	73512884	T	G	73512884	3	3	62	1	0	0	0	0	1	0	0	0	16652	1461	51	5	120	5	TSEN54	17	73512884	Missense_Mutation	SNP	T	TCGA-PK-A5HB-01A-11D-A29I-10	1171930	73512884	7682326	1200	13191										
UNC13D	201294	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	73839590	73839590	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	cgggggagaagtggtgggatGgaggctggatctgcagagca	21	5	1	2	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	UNC13D-92	NM_199242	exon2	c.C128T	p.P43L	TGGGATGGAGGCT	.	75	61	92	0	.	0	0	0	0	0	A	73839590	G	A	73839590	3	1	62	1	0	0	0	0	1	0	0	0	17025	1348	47	3	3268	3	UNC13D	17	73839590	Missense_Mutation	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	326706	73839590	7355620	1201	13192										
FOXJ1	2302	hgsc.bcm.edu	37	chr17	74133974	74133974	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	tgctgggcctcggtattcacCgtcagcggcccggcccgggg	16	15	2	0	rs894542	byfrequency	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	FOXJ1-227	NM_001454	exon3	c.G726A	p.T242T	ATTCACCGTCAGC	.	11	11	2	0	C|0.925;T|0.075	0	0	0	0	0	T	74133974	C	T	74133974	2	4	62	1	0	0	0	0	0	0	0	1	6030	639	23	1		1	FOXJ1	17	74133974	Silent	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	294384	74133974	7061236	1202	13193										
UBE2O	63893	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	74387281	74387281	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gtccctgctagctgaggccaGgccctgggcaccgccctctg	13	17	1	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	UBE2O-272	NM_022066	exon18	c.C3622A	p.L1208M	AGGCCAGGCCCTG	.	63	54	95	0	.	15	0	15	0	0	T	74387281	G	T	74387281	3	4	62	1	0	0	0	0	1	0	0	0	16906	991	35	3	260	3	UBE2O	17	74387281	Missense_Mutation	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	253307	74387281	6807929	1203	13194										
DNAH17	8632	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr17	76455088	76455088	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	cgagccggcacttacggcaaTcttgtttttgatccgggaca	11	11	1	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	DNAH17-142	NM_173628	exon61	c.A9856T	p.I3286F	CGGCAATCTTGTT	.	67	53	98	0	.	0	0	0	0	0	A	76455088	T	A	76455088	3	1	62	1	0	0	0	0	1	0	0	0	4612	1435	50	5	3616	5	DNAH17	17	76455088	Missense_Mutation	SNP	T	TCGA-PK-A5HB-01A-11D-A29I-10	2067807	76455088	4740122	1204	13195										
C1QTNF1	114897	bcgsc.ca	37	chr17	77043989	77043989	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ggaggaggtggtgatcttgtTcgcgcaggtgggcgaccgca	19	8	1	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	C1QTNF1-91	NM_030968	exon4	c.T665C	p.F222S	TCTTGTTCGCGCA	.	107	84	156	3	.	12	12	0	0	0	C	77043989	T	C	77043989	3	2	62	1	0	0	0	0	1	0	0	0	1968	1783	62	4	675	4	C1QTNF1	17	77043989	Missense_Mutation	SNP	T	TCGA-PK-A5HB-01A-11D-A29I-10	588901	77043989	4151221	1205	13196										
ARHGDIA	396	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	79827660	79827660	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	agcagggcctccttgtacttTcgcaggctctcgtcgtcctt	10	14	1	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ARHGDIA-90	NM_004309	exon2	c.A147G	p.R49R	GTACTTTCGCAGG	.	20	19	61	1	.	294	31	262	0	1	C	79827660	T	C	79827660	2	2	62	1	0	0	0	0	0	0	0	1	890	1770	62	4		4	ARHGDIA	17	79827660	Silent	SNP	T	TCGA-PK-A5HB-01A-11D-A29I-10	2783671	79827660	1367550	1206	13197										
CEP192	55125	hgsc.bcm.edu;broad.mit.edu	37	chr18	13059087	13059087	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gctcttttttgaaggtggatCtttcaacatatcgttgttta	8	6	3	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CEP192-27	NM_032142	exon21	c.C4264T	p.L1422F	GTGGATCTTTCAA	.	69	4	99	0	.	0	0	0	0	0	T	13059087	C	T	13059087	3	4	62	1	0	0	0	0	1	0	0	0	3257	913	32	3	4342	3	CEP192	18	13059087	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10		13059087	65018161	1207	13198										
POTEC	388468	broad.mit.edu	37	chr18	14533105	14533105	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	actctctggccgtctgtccaGatagatcttgagaagataca	9	10	3	4	rs76750627		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	POTEC-3	NM_001137671	exon5	c.C1010G	p.S337C	TGTCCAGATAGAT	.	344	9	514	0	C|1.000;|0.000	1	1	0	0	0	C	14533105	G	C	14533105	3	2	62	1	0	0	0	0	1	0	0	0	12291	942	33	3	646	3	POTEC	18	14533105	Missense_Mutation	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	1474018	14533105	63544143	1208	13199										
CABYR	26256	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr18	21739840	21739840	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ccctaagtccccagaatgctAatcctccaagtggacaagat	7	13	0	2	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CABYR-90	NM_153769	exon5	c.A946G	p.N316D	AATGCTAATCCTC	.	55	40	86	0	.	0	0	0	0	0	G	21739840	A	G	21739840	3	3	62	1	0	0	0	0	1	0	0	0	2542	362	13	4	1901	4	CABYR	18	21739840	Missense_Mutation	SNP	A	TCGA-PK-A5HB-01A-11D-A29I-10	7206735	21739840	56337408	1209	13200										
MYO5B	4645	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr18	47429038	47429038	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gagacgtttcagatgctctgCtgagcgggcctcaatcctga	12	11	3	4	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	MYO5B-72	NM_001080467	exon21	c.G2737A	p.A913T	GCTCTGCTGAGCG	.	56	40	71	0	.	13	0	13	0	0	T	47429038	C	T	47429038	3	4	62	1	0	0	0	0	1	0	0	0	10107	797	28	3	2889	3	MYO5B	18	47429038	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	25689198	47429038	30648210	1210	13201										
MEX3C	51320	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr18	48702805	48702806	+	Missense_Mutation	DNP	AC	AC	CA													0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ttttcacagatcttgttggcAcattccatgcagaagaggtt					novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	AC	AC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	MEX3C-659	NM_016626	exon2	c.G1895T	p.C632L	TTGGCACATTCCA	.	136	0	216	0	.	0	0	0	0	0	CA	48702806	AC	CA	48702805	3	2	62	1	0	0	0	0	1	0	0	0	9539	157	6	5	87	5	MEX3C	18	48702805	Missense_Mutation	DNP	AC	TCGA-PK-A5HB-01A-11D-A29I-10	1273767	48702805	29374443	1211	13202										
TXNL1	9352	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr18	54293682	54293682	+	Frame_Shift_Del	DEL	C	C	-													0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ggggcaatcctcaaacatggCccacacctgttagaaaagga					novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TXNL1-90	NM_004786	exon2	c.105delG	p.G35fs	ACATGGCCCACAC	.	87	64	160	0	.	0	0	0	0	0	-	54293682	C	-	54293682	7	5	62	1	0	1	0	1	0	0	0	0	16842	726	26	0	792	0	TXNL1	18	54293682	Frame_Shift_Del	DEL	C	TCGA-PK-A5HB-01A-11D-A29I-10	5590877	54293682	23783566	1212	13203										
NEDD4L	23327	broad.mit.edu	37	chr18	55816791	55816791	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	agacgtctcgcatttgagcaGgtaacactcggtaagacttt	10	9	1	3	rs4149601	byfrequency	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	NEDD4L-658	NM_001144968	exon1	c.G24A	p.Q8Q	TGAGCAGGTAACA	.	83	3	124	0	G|0.696;A|0.304	0	0	0	0	0	A	55816791	G	A	55816791	2	1	62	1	0	0	0	0	0	0	0	1	10340	1014	35	3		3	NEDD4L	18	55816791	Silent	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	1523109	55816791	22260457	1213	13204										
ATP9B	374868	hgsc.bcm.edu	37	chr18	76829525	76829525	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ggccgggagccgaccggcacAgcaggtaaccgaggcggcac	17	14	0	0	rs4078115		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ATP9B-93	NM_198531	exon1	c.A115G	p.S39G	CGGCACAGCAGGT	.	11	11	0	0	A|0.693;G|0.307	0	0	0	0	0	G	76829525	A	G	76829525	3	3	62	1	0	0	0	0	1	0	0	0	1200	188	7	4	117	4	ATP9B	18	76829525	Missense_Mutation	SNP	A	TCGA-PK-A5HB-01A-11D-A29I-10	21012734	76829525	1247723	1214	13205										
PPAP2C	8612	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	288051	288051	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	tggccgtgatggtgaccccaGccatgagcccgtgggtgatg	16	11	0	4	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PPAP2C-90	NM_177543	exon2	c.C236A	p.A79D	ACCCCAGCCATGA	.	321	107	196	0	.	121	109	12	0	0	T	288051	G	T	288051	3	4	62	1	0	0	0	0	1	0	0	0	12321	971	34	3	713	3	PPAP2C	19	288051	Missense_Mutation	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10		288051	58840932	1215	13206										
ODF3L2	284451	ucsc.edu;mdanderson.org	37	chr19	474730	474730	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gccagccgtggggtggagtcGcagctgagggtccccatggt	18	11	0	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ODF3L2-68	NM_182577	exon1	c.C18T	p.C6C	GGAGTCGCAGCTG	.	114	27	24	1	.	0	0	0	0	0	A	474730	G	A	474730	2	1	62	1	0	0	0	0	0	0	0	1	10861	1079	38	1		1	ODF3L2	19	474730	Silent	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	186679	474730	58654253	1216	13207										
ARID3A	1820	hgsc.bcm.edu	37	chr19	929678	929678	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gacgaggacagagagcccgaGagtgcccggatgcagcgggc	18	11	0	2	rs3826948		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ARID3A-90	NM_005224	exon2	c.G150A	p.E50E	GCCCGAGAGTGCC	.	5	5	2	0	T|0.495;C|0.504	0	0	0	0	0	A	929678	G	A	929678	2	1	62	1	0	0	0	0	0	0	0	1	916	933	33	3		3	ARID3A	19	929678	Silent	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	454948	929678	58199305	1217	13208										
ARID3A	1820	hgsc.bcm.edu	37	chr19	929753	929753	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gctgcgggcctgggacacccAgccagccccggcggctctga	15	17	1	1	rs1799595		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ARID3A-90	NM_005224	exon2	c.A225G	p.P75P	ACACCCAGCCAGC	.	15	15	0	0	A|0.114;G|0.886	5	0	5	0	0	G	929753	A	G	929753	2	3	62	1	0	0	0	0	0	0	0	1	916	175	7	4		4	ARID3A	19	929753	Silent	SNP	A	TCGA-PK-A5HB-01A-11D-A29I-10	75	929753	58199230	1218	13209										
WDR18	57418	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	985942	985942	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	cccaatggtctctacgtcctGgcaggagttgcagaaagcat	11	11	1	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	WDR18-91	NM_024100	exon2	c.G288A	p.L96L	CGTCCTGGCAGGA	.	201	88	173	0	.	55	26	29	0	0	A	985942	G	A	985942	2	1	62	1	0	0	0	0	0	0	0	1	17316	1335	47	3		3	WDR18	19	985942	Silent	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	56189	985942	58143041	1219	13210										
SGTA	6449	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	2763724	2763724	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	acagtcctgcaccgcgcctgCgtagttgccgagtttgctgt	12	13	0	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SGTA-91	NM_003021	exon6	c.G424A	p.A142T	CGCCTGCGTAGTT	.	122	51	89	0	.	201	100	101	0	0	T	2763724	C	T	2763724	3	4	62	1	0	0	0	0	1	0	0	0	14260	768	27	1	541	1	SGTA	19	2763724	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	1777782	2763724	56365259	1220	13211										
ZNF77	58492	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	2934175	2934175	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	agggtttctctccagtgtgcGtcctcacgtgatctctaaag	10	11	3	1	rs151130031	byfrequency	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ZNF77-91	NM_021217	exon4	c.C950T	p.T317M	GTGTGCGTCCTCA	.	174	71	192	1	G|0.998;A|0.002	5	5	0	0	0	A	2934175	G	A	2934175	3	1	62	1	0	0	0	0	1	0	0	0	18179	1145	40	1	691	1	ZNF77	19	2934175	Missense_Mutation	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	170451	2934175	56194808	1221	13212										
EEF2	1938	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	3979353	3979353	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ggggatgcaggcgtggtcctCctccaggtccttcaggcaga	15	12	1	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	EEF2-90	NM_001961	exon11	c.G1687A	p.E563K	GGTCCTCCTCCAG	.	134	63	104	0	.	3761	2086	1673	0	2	T	3979353	C	T	3979353	3	4	62	1	0	0	0	0	1	0	0	0	4940	864	30	3	909	3	EEF2	19	3979353	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	1045178	3979353	55149630	1222	13213										
ANKRD24	170961	hgsc.bcm.edu	37	chr19	4217956	4217956	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ctggagctgcggggccgggcAgccagtctggagcaggaggt	20	10	1	0	rs6510794	byfrequency	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ANKRD24-68	NM_133475	exon18	c.A2799G	p.A933A	CCGGGCAGCCAGT	.	12	11	0	0	A|0.541;G|0.459	0	0	0	0	0	G	4217956	A	G	4217956	2	3	62	1	0	0	0	0	0	0	0	1	653	175	7	4		4	ANKRD24	19	4217956	Silent	SNP	A	TCGA-PK-A5HB-01A-11D-A29I-10	238603	4217956	54911027	1223	13214										
CHAF1A	10036	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	4423813	4423813	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	aacatcacagcgcattaaagCagagaaggccgaaatcacga	9	10	2	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CHAF1A-92	NM_005483	exon7	c.C1319T	p.A440V	TTAAAGCAGAGAA	.	87	27	88	2	.	0	0	0	0	0	T	4423813	C	T	4423813	3	4	62	1	0	0	0	0	1	0	0	0	3317	710	25	3	1345	3	CHAF1A	19	4423813	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	205857	4423813	54705170	1224	13215										
UHRF1	29128	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	4930840	4930840	+	RNA	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	cgagccctgcagctccacgtCcaggccggcgctggaggagg	16	15	0	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	UHRF1-522	.	.	.	.	CCACGTCCAGGCC	.	183	88	102	0	.	17	10	7	0	0	T	4930840	C	T	4930840	1	4	62	0	1	0	0	0	0	0	0	0	17005	855	30	3		3	UHRF1	19	4930840	RNA	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	507027	4930840	54198143	1225	13216										
FUT6	2528	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr19	5831650	5831650	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	tcaggtagcgggcgtggtccTtgtccagctcctgcaggtac	14	12	1	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	FUT6-90	NM_000150	exon3	c.A929G	p.K310R	TGGTCCTTGTCCA	.	1343	347	1019	1	.	0	0	0	0	0	C	5831650	T	C	5831650	3	2	62	1	0	0	0	0	1	0	0	0	6127	1609	56	4	154	4	FUT6	19	5831650	Missense_Mutation	SNP	T	TCGA-PK-A5HB-01A-11D-A29I-10	900810	5831650	53297333	1226	13217										
MLLT1	4298	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	6213091	6213091	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	caggcagctctgcagtttgcGcacggtggtctcgtccaggg	15	12	2	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	MLLT1-658	NM_005934	exon12	c.C1642T	p.R548C	GTTTGCGCACGGT	.	215	102	140	0	.	16	9	7	0	0	A	6213091	G	A	6213091	3	1	62	1	0	0	0	0	1	0	0	0	9653	1087	38	1	41	1	MLLT1	19	6213091	Missense_Mutation	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	381441	6213091	52915892	1227	13218										
CLPP	8192	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr19	6361605	6361606	+	Frame_Shift_Ins	INS	-	-	A													0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	atgtggcccggaatattggtINSagggggggcccgggtggcgt					novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CLPP-91	NM_006012	exon1	c.20_21insA	p.V7fs	TATTGGTAGGGGG	.	46	23	21	0	.	0	0	0	0	0	A	6361606	-	A	6361605	7	5	62	1	0	1	1	0	0	0	0	0	3558	1638	57	0	22	0	CLPP	19	6361605	Frame_Shift_Ins	INS	-	TCGA-PK-A5HB-01A-11D-A29I-10	148514	6361605	52767378	1228	13219										
GPR108	56927	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr19	6731283	6731283	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	tgatgcgggtgaagtagacgTagcagatgacctgcaggggc	17	7	0	5	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	GPR108-68	NM_001080452	exon16	c.A1361G	p.Y454C	TAGACGTAGCAGA	.	115	49	53	0	.	0	0	0	0	0	C	6731283	T	C	6731283	3	2	62	1	0	0	0	0	1	0	0	0	6644	1638	57	4	282	4	GPR108	19	6731283	Missense_Mutation	SNP	T	TCGA-PK-A5HB-01A-11D-A29I-10	369678	6731283	52397700	1229	13220										
PNPLA6	10908	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	7622153	7622153	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	cctactcatggatggcggctAcatcaacaatctgccaggca	9	13	3	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PNPLA6-47	NM_001166111	exon29	c.A3410G	p.Y1137C	GCGGCTACATCAA	.	164	60	69	0	.	69	35	34	0	0	G	7622153	A	G	7622153	3	3	62	1	0	0	0	0	1	0	0	0	12198	391	14	4	3520	4	PNPLA6	19	7622153	Missense_Mutation	SNP	A	TCGA-PK-A5HB-01A-11D-A29I-10	890870	7622153	51506830	1230	13221										
LRRC8E	80131	ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	7965669	7965669	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	agccgcctggagctcaaaggCaaccgcttagaggcgctgcc	13	14	1	1	rs3745385	byfrequency	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	LRRC8E-92	NM_001268284	exon4	c.C2262T	p.G754G	CAAAGGCAACCGC	.	162	63	127	1	C|0.956;T|0.044	7	2	5	0	0	T	7965669	C	T	7965669	2	4	62	1	0	0	0	0	0	0	0	1	9052	697	25	3		3	LRRC8E	19	7965669	Silent	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	343516	7965669	51163314	1231	13222										
MAP2K7	5609	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	7975940	7975940	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	tcaagccctccaacatcctgCtggacgagcggggccagatc	11	15	1	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	MAP2K7-1450	NM_145185	exon7	c.C751T	p.L251L	ATCCTGCTGGACG	.	233	79	150	1	.	24	10	14	0	0	T	7975940	C	T	7975940	2	4	62	1	0	0	0	0	0	0	0	1	9270	796	28	3		3	MAP2K7	19	7975940	Silent	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	10271	7975940	51153043	1232	13223										
FBN3	84467	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	8138131	8138131	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gaagccaccaagagtgttgcGacaggaggcgctcccgcagg	15	12	0	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	FBN3-100	NM_032447	exon61	c.C7753T	p.R2585C	TGTTGCGACAGGA	.	239	107	191	2	.	0	0	0	0	0	A	8138131	G	A	8138131	3	1	62	1	0	0	0	0	1	0	0	0	5723	1058	37	1	688	1	FBN3	19	8138131	Missense_Mutation	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	162191	8138131	50990852	1233	13224										
KANK3	256949	hgsc.bcm.edu	37	chr19	8399635	8399635	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gctggtgctccagactggcgCgcagcagctctagctcgcgc	14	15	1	1	rs890853	byfrequency	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	KANK3-90	NM_198471	exon3	c.G1076A	p.R359H	CTGGCGCGCAGCA	.	9	4	2	0	C|0.769;T|0.231	0	0	0	0	0	T	8399635	C	T	8399635	3	4	62	1	0	0	0	0	1	0	0	0	7999	768	27	1	1425	1	KANK3	19	8399635	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	261504	8399635	50729348	1234	13225										
ANGPTL4	51129	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	8436389	8436389	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	cctccgcagggacaagaactGcgccaagagcctctctggtg	12	14	1	2	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ANGPTL4-91	NM_139314	exon6	c.G1022A	p.C341Y	AGAACTGCGCCAA	.	192	81	91	1	.	9	9	0	0	0	A	8436389	G	A	8436389	3	1	62	1	0	0	0	0	1	0	0	0	616	1319	46	3	1044	3	ANGPTL4	19	8436389	Missense_Mutation	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	36754	8436389	50692594	1235	13226										
HNRNPM	4670	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	8531219	8531219	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	agataaagatggaaaaagtcGtggaataggcactgttactt	11	4	0	2	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	HNRNPM-68	NM_005968	exon7	c.G731A	p.R244H	AAAGTCGTGGAAT	.	163	60	143	0	.	126	57	69	0	0	A	8531219	G	A	8531219	3	1	62	1	0	0	0	0	1	0	0	0	7292	1145	40	1	757	1	HNRNPM	19	8531219	Missense_Mutation	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	94830	8531219	50597764	1236	13227										
PRAM1	84106	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	8563981	8563981	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ggctgcggcacggacttcttAgggaggccaccgacctgagg	16	12	1	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	.	NM_032152	exon2	c.T711C	p.P237P	CTTCTTAGGGAGG	.	59	23	35	0	.	0	0	0	0	0	G	8563981	A	G	8563981	2	3	62	1	0	0	0	0	0	0	0	1	12455	407	15	4		4	PRAM1	19	8563981	Silent	SNP	A	TCGA-PK-A5HB-01A-11D-A29I-10	32762	8563981	50565002	1237	13228										
ADAMTS10	81794	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr19	8645784	8645784	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	tgccgcgcgccccctagtggCcatggcaggttttgcagcac	13	15	0	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ADAMTS10-229	NM_030957	exon26	c.G3305A	p.G1102D	TAGTGGCCATGGC	.	33	8	20	0	.	0	0	0	0	0	T	8645784	C	T	8645784	3	4	62	1	0	0	0	0	1	0	0	0	256	739	26	3	10	3	ADAMTS10	19	8645784	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	81803	8645784	50483199	1238	13229										
MUC16	94025	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	9019621	9019621	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gctgctggtgggcacagaggTccgatgggtgaaacctgcat	16	9	0	2	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	MUC16-566	NM_024690	exon22	c.A37525G	p.T12509A	CAGAGGTCCGATG	.	328	139	273	0	.	0	0	0	0	0	C	9019621	T	C	9019621	3	2	62	1	0	0	0	0	1	0	0	0	10001	1667	58	4	6250	4	MUC16	19	9019621	Missense_Mutation	SNP	T	TCGA-PK-A5HB-01A-11D-A29I-10	373837	9019621	50109362	1239	13230										
MUC16	94025	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	9084962	9084962	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	aataggtgtcactcttgaagTcaactcatgagtgagagatg	11	6	4	4	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	MUC16-566	NM_024690	exon1	c.A6853G	p.T2285A	TTGAAGTCAACTC	.	82	32	84	0	.	0	0	0	0	0	C	9084962	T	C	9084962	3	2	62	1	0	0	0	0	1	0	0	0	10001	1667	58	4	37006	4	MUC16	19	9084962	Missense_Mutation	SNP	T	TCGA-PK-A5HB-01A-11D-A29I-10	65341	9084962	50044021	1240	13231										
OR1M1	125963	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	9204539	9204539	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	tcattgtggcagggatggtgAtagccacgccctttgtctgc	13	10	2	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	OR1M1-71	NM_001004456	exon1	c.A619T	p.I207L	ATGGTGATAGCCA	.	117	54	101	0	.	0	0	0	0	0	T	9204539	A	T	9204539	3	4	62	1	0	0	0	0	1	0	0	0	10997	333	12	5	621	5	OR1M1	19	9204539	Missense_Mutation	SNP	A	TCGA-PK-A5HB-01A-11D-A29I-10	119577	9204539	49924444	1241	13232										
ZNF317	57693	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	9271917	9271917	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ggggagaaaccgtacgaatgCgatcactgtgggaaggcctt	15	8	1	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ZNF317-90	NM_020933	exon7	c.C1596T	p.C532C	CGAATGCGATCAC	.	212	91	148	1	.	23	8	15	0	0	T	9271917	C	T	9271917	2	4	62	1	0	0	0	0	0	0	0	1	17872	776	27	1		1	ZNF317	19	9271917	Silent	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	67378	9271917	49857066	1242	13233										
ZNF559	84527	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	9453476	9453476	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gaaagcctttagatactcctCgcaccttagtcaacataaaa	5	11	1	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ZNF559-91	NM_001202406	exon6	c.C1541T	p.S514L	ACTCCTCGCACCT	.	201	83	133	0	.	6	3	3	0	0	T	9453476	C	T	9453476	3	4	62	1	0	0	0	0	1	0	0	0	18027	893	31	1	1363	1	ZNF559	19	9453476	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	181559	9453476	49675507	1243	13234										
ZNF426	79088	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	9639084	9639084	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	tttgttcatgtcttcgaagtGaacggggatgactgtaagct	12	6	2	2	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ZNF426-91	NM_024106	exon8	c.C1637T	p.S546L	CGAAGTGAACGGG	.	25	12	35	0	.	4	1	3	0	0	A	9639084	G	A	9639084	3	1	62	1	0	0	0	0	1	0	0	0	17937	1294	45	3	31	3	ZNF426	19	9639084	Missense_Mutation	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	185608	9639084	49489899	1244	13235										
ICAM1	3383	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	10394800	10394801	+	Missense_Mutation	DNP	CC	CC	TT													0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	tgttccctggacgggctgttCccagtctcggaggcccaggt					novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	CC	CC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ICAM1-91	NM_000201	exon4	c.C730T	p.P244S	CTGTTCCCAGTCT	.	114	15	106	0	.	0	0	0	0	0	TT	10394801	CC	TT	10394800	3	4	62	1	0	0	0	0	1	0	0	0	7500	854	30	3	743	3	ICAM1	19	10394800	Missense_Mutation	DNP	CC	TCGA-PK-A5HB-01A-11D-A29I-10	755716	10394800	48734183	1245	13236										
RAVER1	125950	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	10439472	10439472	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	tccagtgcacgtagagggtgCgtggtcccagcggcttgccc	15	13	0	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	RAVER1-91	NM_133452	exon3	c.G653A	p.R218H	AGGGTGCGTGGTC	.	382	151	242	1	.	69	37	32	0	0	T	10439472	C	T	10439472	3	4	62	1	0	0	0	0	1	0	0	0	13129	768	27	1	1661	1	RAVER1	19	10439472	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	44672	10439472	48689511	1246	13237										
PDE4A	5141	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	10578111	10578111	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ccccttctccctgcttggagGaccctgtctgtttcagagca	9	15	3	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PDE4A-523	NM_001111307	exon15	c.G2475A	p.R825R	TTGGAGGACCCTG	.	106	37	97	0	.	3	3	0	0	0	A	10578111	G	A	10578111	2	1	62	1	0	0	0	0	0	0	0	1	11668	1165	41	3		3	PDE4A	19	10578111	Silent	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	138639	10578111	48550872	1247	13238										
ATG4D	84971	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	10657607	10657607	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	atgggcctgcccgctggatgCccccacgctgggcccagggt	15	16	0	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ATG4D-90	NM_032885	exon4	c.C586T	p.P196S	TGGATGCCCCCAC	.	87	39	33	0	.	41	24	17	0	0	T	10657607	C	T	10657607	3	4	62	1	0	0	0	0	1	0	0	0	1100	739	26	3	600	3	ATG4D	19	10657607	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	79496	10657607	48471376	1248	13239										
SMARCA4	6597	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	11097117	11097117	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ccccgaccacctgcagatggCggtgcagggcaagcggccga	15	15	0	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SMARCA4-1523	NM_003072	exon4	c.C608T	p.A203V	AGATGGCGGTGCA	.	129	49	65	0	.	57	37	20	0	0	T	11097117	C	T	11097117	3	4	62	1	0	0	0	0	1	0	0	0	14805	768	27	1	618	1	SMARCA4	19	11097117	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	439510	11097117	48031866	1249	13240										
SMARCA4	6597	hgsc.bcm.edu	37	chr19	11098456	11098456	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	cccacccgccgcctcgcccgTgatgccaccgcagacccagt	9	22	0	2	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SMARCA4-1523	NM_003072	exon6	c.T974C	p.V325A	CGCCCGTGATGCC	.	24	7	3	0	.	25	15	10	0	0	C	11098456	T	C	11098456	3	2	62	1	0	0	0	0	1	0	0	0	14805	1696	59	4	992	4	SMARCA4	19	11098456	Missense_Mutation	SNP	T	TCGA-PK-A5HB-01A-11D-A29I-10	1339	11098456	48030527	1250	13241										
KANK2	25959	hgsc.bcm.edu;broad.mit.edu	37	chr19	11304002	11304002	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gtcctctgggggatcggggaGgtccaggcagagctcgctgc	18	11	1	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	KANK2-68	NM_015493	exon2	c.C754T	p.L252F	CGGGGAGGTCCAG	.	64	4	42	0	.	25	23	2	0	0	A	11304002	G	A	11304002	3	1	62	1	0	0	0	0	1	0	0	0	7998	1000	35	3	1865	3	KANK2	19	11304002	Missense_Mutation	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	205546	11304002	47824981	1251	13242										
DOCK6	57572	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	11326127	11326127	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ccgccagcgcacattctccgGattcccaaacgggctcctct	8	18	2	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	DOCK6-93	NM_020812	exon32	c.C4042A	p.P1348T	TCTCCGGATTCCC	.	152	66	137	0	.	11	8	3	0	0	T	11326127	G	T	11326127	3	4	62	1	0	0	0	0	1	0	0	0	4702	1174	41	3	2169	3	DOCK6	19	11326127	Missense_Mutation	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	22125	11326127	47802856	1252	13243										
EPOR	2057	ucsc.edu;bcgsc.ca	37	chr19	11492756	11492756	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	agccgtgggagcctggtgcaGgcgacacagcttccatggct	15	12	0	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	EPOR-523	NM_000121	exon3	c.C277T	p.L93L	GGTGCAGGCGACA	.	209	97	175	3	.	16	11	5	0	0	A	11492756	G	A	11492756	2	1	62	1	0	0	0	0	0	0	0	1	5202	991	35	3		3	EPOR	19	11492756	Silent	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	166629	11492756	47636227	1253	13244										
ZNF823	55552	broad.mit.edu	37	chr19	11832936	11832936	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ttcccacattccttacactcAtatggcttctctccagtgtg	5	14	2	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ZNF823-24	NM_001080493	exon4	c.T1413C	p.Y471Y	ACACTCATATGGC	.	108	4	89	0	.	10	10	0	0	0	G	11832936	A	G	11832936	2	3	62	1	0	0	0	0	0	0	0	1	18216	224	8	4		4	ZNF823	19	11832936	Silent	SNP	A	TCGA-PK-A5HB-01A-11D-A29I-10	340180	11832936	47296047	1254	13245										
ZNF441	126068	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr19	11892031	11892031	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	tcttccaattacattcgagtAcatgaaaagactcacactgg	6	10	2	2	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ZNF441-69	NM_152355	exon4	c.A1392G	p.V464V	TCGAGTACATGAA	.	47	17	44	0	.	1	1	0	0	0	G	11892031	A	G	11892031	2	3	62	1	0	0	0	0	0	0	0	1	17951	378	14	4		4	ZNF441	19	11892031	Silent	SNP	A	TCGA-PK-A5HB-01A-11D-A29I-10	59095	11892031	47236952	1255	13246										
ZNF491	126069	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	11917409	11917409	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gacacacacaggagagaagcCgtacaaatgtaaggaatgtg	12	7	0	1	rs140071849	byfrequency	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ZNF491-92	NM_152356	exon3	c.C641T	p.P214L	AGAAGCCGTACAA	.	44	13	46	0	C|1.000;T|0.000	1	1	0	0	0	T	11917409	C	T	11917409	3	4	62	1	0	0	0	0	1	0	0	0	17979	652	23	1	643	1	ZNF491	19	11917409	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	25378	11917409	47211574	1256	13247										
ZNF700	90592	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	12060900	12060900	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	tgtgggaatggattcacatcTgccaagattcttcaaataca	8	8	4	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ZNF700-90	NM_001271848	exon4	c.T2070A	p.S690S	CACATCTGCCAAG	.	168	85	118	0	.	10	4	6	0	0	A	12060900	T	A	12060900	2	1	62	1	0	0	0	0	0	0	0	1	18141	1567	55	5		5	ZNF700	19	12060900	Silent	SNP	T	TCGA-PK-A5HB-01A-11D-A29I-10	143491	12060900	47068083	1257	13248										
ZNF878	729747	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	12155177	12155177	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	atccttgacaaaactgaaggCtttcacacattttttacatt	4	9	1	2	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	.	NM_001080404	exon4	c.G1039A	p.A347T	TGAAGGCTTTCAC	.	36	22	24	0	.	0	0	0	0	0	T	12155177	C	T	12155177	3	4	62	1	0	0	0	0	1	0	0	0	18233	797	28	3	560	3	ZNF878	19	12155177	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	94277	12155177	46973806	1258	13249										
ZNF44	51710	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	12386792	12386792	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	tatacagttcaggttcctaaTggtttctcgcatcacatctc	6	11	4	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ZNF44-23	NM_001164276	exon3	c.A253G	p.I85V	TCCTAATGGTTTC	.	159	66	133	0	.	0	0	0	0	0	C	12386792	T	C	12386792	3	2	62	1	0	0	0	0	1	0	0	0	17949	1464	51	4	1750	4	ZNF44	19	12386792	Missense_Mutation	SNP	T	TCGA-PK-A5HB-01A-11D-A29I-10	231615	12386792	46742191	1259	13250										
ZNF563	147837	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	12430322	12430322	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	actgaaggtttttccacattCcttacactcatagcgtttct	5	11	2	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ZNF563-90	NM_145276	exon4	c.G517A	p.E173K	CACATTCCTTACA	.	210	74	171	0	.	2	0	2	0	0	T	12430322	C	T	12430322	3	4	62	1	0	0	0	0	1	0	0	0	18031	864	30	3	917	3	ZNF563	19	12430322	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	43530	12430322	46698661	1260	13251										
ZNF564	163050	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	12637692	12637692	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ccagtgtgagttctttcgtgTatttgaaatgaactgggaca	11	6	1	3	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ZNF564-91	NM_144976	exon4	c.A1230T	p.I410I	TTCGTGTATTTGA	.	126	56	86	0	.	9	1	8	0	0	A	12637692	T	A	12637692	2	1	62	1	0	0	0	0	0	0	0	1	18032	1628	57	5		5	ZNF564	19	12637692	Silent	SNP	T	TCGA-PK-A5HB-01A-11D-A29I-10	207370	12637692	46491291	1261	13252										
MAN2B1	4125	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr19	12768936	12768936	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	tggccgccaggcccaccagcGcctccagctggttgcacacc	11	19	0	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	MAN2B1-94	NM_000528	exon10	c.C1250A	p.A417E	ACCAGCGCCTCCA	.	117	55	46	0	.	58	29	29	0	0	T	12768936	G	T	12768936	3	4	62	1	0	0	0	0	1	0	0	0	9244	1087	38	2	1845	2	MAN2B1	19	12768936	Missense_Mutation	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	131244	12768936	46360047	1262	13253										
TRMT1	55621	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr19	13216335	13216335	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	aggccggggaccccagttggCctccgggttagcctggaagc	16	13	0	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TRMT1-92	NM_001136035	exon15	c.G1669A	p.A557T	AGTTGGCCTCCGG	.	89	34	77	0	.	34	16	18	0	0	T	13216335	C	T	13216335	3	4	62	1	0	0	0	0	1	0	0	0	16599	739	26	3	322	3	TRMT1	19	13216335	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	447399	13216335	45912648	1263	13254										
CACNA1A	773	hgsc.bcm.edu	37	chr19	13397604	13397604	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	tggctgggctctggggcaggCcggcgtggccaaggctgccg	20	12	1	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CACNA1A-67	NM_001127221	exon20	c.G3269A	p.G1090D	GGCAGGCCGGCGT	.	55	20	6	0	.	0	0	0	0	0	T	13397604	C	T	13397604	3	4	62	1	0	0	0	0	1	0	0	0	2544	739	26	3	4468	3	CACNA1A	19	13397604	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	181269	13397604	45731379	1264	13255										
RFX1	5989	broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr19	14074020	14074020	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	catgtactcgtcgtagagcaGccggatgaggtggaaggaac	15	8	0	2	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	RFX1-92	NM_002918	exon19	c.C2638T	p.L880L	AGAGCAGCCGGAT	.	83	26	55	1	.	8	5	3	0	0	A	14074020	G	A	14074020	2	1	62	1	0	0	0	0	0	0	0	1	13297	962	34	3		3	RFX1	19	14074020	Silent	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	676416	14074020	45054963	1265	13256										
LPHN1	22859	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr19	14261780	14261780	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gccctcgtggctaggacgccGcacctggtagtagccctgca	13	15	0	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	LPHN1-523	NM_001008701	exon24	c.C4330T	p.R1444W	GACGCCGCACCTG	.	110	49	39	0	.	23	11	12	0	0	A	14261780	G	A	14261780	3	1	62	1	0	0	0	0	1	0	0	0	8942	1086	38	1	98	1	LPHN1	19	14261780	Missense_Mutation	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	187760	14261780	44867203	1266	13257										
EMR2	30817	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	14865828	14865828	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gtgggtgcaacggcagatggTgctggtgtctctggtgccta	17	8	1	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	EMR2-524	NM_013447	exon14	c.A1528G	p.T510A	AGATGGTGCTGGT	.	244	100	176	1	.	0	0	0	0	0	C	14865828	T	C	14865828	3	2	62	1	0	0	0	0	1	0	0	0	5118	1696	59	4	975	4	EMR2	19	14865828	Missense_Mutation	SNP	T	TCGA-PK-A5HB-01A-11D-A29I-10	604048	14865828	44263155	1267	13258										
OR7A17	26333	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	14991440	14991440	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	aagagacaactgagaggtgtGatgcacaggtggaaaatgcc	14	6	0	3	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	OR7A17-68	NM_030901	exon1	c.C728T	p.S243L	AGGTGTGATGCAC	.	177	64	160	0	.	0	0	0	0	0	A	14991440	G	A	14991440	3	1	62	1	0	0	0	0	1	0	0	0	11244	1294	45	3	203	3	OR7A17	19	14991440	Missense_Mutation	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	125612	14991440	44137543	1268	13259										
SYDE1	85360	hgsc.bcm.edu	37	chr19	15221496	15221496	+	Frame_Shift_Del	DEL	C	C	-													0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	agcggccccccggccaggtgCccctcatcatccagaagtgc					novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SYDE1-92	NM_033025	exon4	c.1240delC	p.P414fs	CAGGTGCCCCTCA	.	129	53	35	1	.	0	0	0	0	0	-	15221496	C	-	15221496	7	5	62	1	0	1	0	1	0	0	0	0	15472	739	26	0	1254	0	SYDE1	19	15221496	Frame_Shift_Del	DEL	C	TCGA-PK-A5HB-01A-11D-A29I-10	230056	15221496	43907487	1269	13260										
WIZ	58525	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr19	15535673	15535673	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ctggatgtagctgcggtaggCgcccaccttctggggccggt	16	12	1	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	WIZ-68	NM_021241	exon6	c.G1780A	p.A594T	GGTAGGCGCCCAC	.	158	11	89	0	.	30	30	0	0	0	T	15535673	C	T	15535673	3	4	62	1	0	0	0	0	1	0	0	0	17413	768	27	1	616	1	WIZ	19	15535673	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	314177	15535673	43593310	1270	13261										
CYP4F12	66002	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	15794437	15794437	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gcgcttccacagggcctgccGcctggtgcatgacttcacag	12	15	1	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CYP4F12-95	NM_023944	exon7	c.G782C	p.R261P	CCTGCCGCCTGGT	.	139	63	139	0	.	0	0	0	0	0	C	15794437	G	C	15794437	3	2	62	1	0	0	0	0	1	0	0	0	4193	1087	38	2	804	2	CYP4F12	19	15794437	Missense_Mutation	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	258764	15794437	43334546	1271	13262										
HAUS8	93323	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	17170457	17170457	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ggcgtctttttgacgatgctTttgtctaagataaagcacag	10	7	2	2	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	HAUS8-90	NM_033417	exon6	c.A330T	p.K110N	GATGCTTTTGTCT	.	62	29	77	0	.	0	0	0	0	0	A	17170457	T	A	17170457	3	1	62	1	0	0	0	0	1	0	0	0	6993	1838	64	5	926	5	HAUS8	19	17170457	Missense_Mutation	SNP	T	TCGA-PK-A5HB-01A-11D-A29I-10	1376020	17170457	41958526	1272	13263										
MYO9B	4650	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	17317488	17317488	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	tcaaaccccactgcctgcagAgctgccggagaagcaggagc	12	14	1	2	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	MYO9B-67	NM_001130065	exon34	c.A5387T	p.E1796V	CTGCAGAGCTGCC	.	159	66	116	2	.	1	0	1	0	0	T	17317488	A	T	17317488	3	4	62	1	0	0	0	0	1	0	0	0	10113	318	11	5	5517	5	MYO9B	19	17317488	Missense_Mutation	SNP	A	TCGA-PK-A5HB-01A-11D-A29I-10	147031	17317488	41811495	1273	13264										
PGLS	25796	hgsc.bcm.edu	37	chr19	17622614	17622614	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gcgcccgtttcgcgctcggcCtgtcgggcgggagcctcgtc	16	16	0	0	rs11086075	byfrequency	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PGLS-90	NM_012088	exon1	c.C133T	p.L45L	CTCGGCCTGTCGG	.	29	12	0	0	C|0.617;T|0.383	29	15	14	0	0	T	17622614	C	T	17622614	2	4	62	1	0	0	0	0	0	0	0	1	11821	680	24	3		3	PGLS	19	17622614	Silent	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	305126	17622614	41506369	1274	13265										
MAP1S	55201	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr19	17844087	17844087	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gcctacctgcccagcgggagCagcgcccacctggtggatga	14	15	0	1	rs113822615	byfrequency	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	MAP1S-90	NM_018174	exon6	c.C2874T	p.S958S	CGGGAGCAGCGCC	.	336	21	182	0	C|0.500;T|0.500	39	36	3	0	0	T	17844087	C	T	17844087	2	4	62	1	0	0	0	0	0	0	0	1	9262	709	25	3		3	MAP1S	19	17844087	Silent	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	221473	17844087	41284896	1275	13266										
JAK3	3718	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	17953936	17953936	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	acactcaccctgctccttgaGactgaggcccacggggaggc	12	15	1	2	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	JAK3-2418	NM_000215	exon5	c.C466T	p.L156F	CCTTGAGACTGAG	.	107	44	65	1	.	0	0	0	0	0	A	17953936	G	A	17953936	3	1	62	1	0	0	0	0	1	0	0	0	7960	942	33	3	2988	3	JAK3	19	17953936	Missense_Mutation	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	109849	17953936	41175047	1276	13267										
PDE4C	5143	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	18331093	18331093	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	cccggagcggctggtttcggAcaggtgggtcaactcccggt	16	12	1	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PDE4C-94	NM_000923	exon8	c.T745A	p.S249T	TTTCGGACAGGTG	.	225	80	208	0	.	0	0	0	0	0	T	18331093	A	T	18331093	3	4	62	1	0	0	0	0	1	0	0	0	11670	275	10	5	1429	5	PDE4C	19	18331093	Missense_Mutation	SNP	A	TCGA-PK-A5HB-01A-11D-A29I-10	377157	18331093	40797890	1277	13268										
NCAN	1463	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	19337773	19337773	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	cccacctcagaggctgcagtGaaccaaatggagcctccgtt	10	14	1	2	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	NCAN-94	NM_004386	exon7	c.G1551A	p.V517V	TGCAGTGAACCAA	.	93	45	84	0	.	0	0	0	0	0	A	19337773	G	A	19337773	2	1	62	1	0	0	0	0	0	0	0	1	10233	1277	45	3		3	NCAN	19	19337773	Silent	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	1006680	19337773	39791210	1278	13269										
NCAN	1463	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr19	19338131	19338131	+	Frame_Shift_Del	DEL	C	C	-													0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ccccagagccctggctgtggCcccctaccatggtcccaccc					novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	NCAN-94	NM_004386	exon8	c.1702delC	p.P568fs	CTGTGGCCCCCTA	.	31	12	31	0	.	0	0	0	0	0	-	19338131	C	-	19338131	7	5	62	1	0	1	0	1	0	0	0	0	10233	739	26	0	1728	0	NCAN	19	19338131	Frame_Shift_Del	DEL	C	TCGA-PK-A5HB-01A-11D-A29I-10	358	19338131	39790852	1279	13270										
GMIP	51291	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	19744710	19744710	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	tgggggctgggagtctgggtCaaggtgcgggggtggcggtt	24	5	2	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	GMIP-91	NM_016573	exon19	c.G2374A	p.D792N	CTGGGTCAAGGTG	.	54	26	39	0	.	5	3	2	0	0	T	19744710	C	T	19744710	3	4	62	1	0	0	0	0	1	0	0	0	6511	826	29	3	550	3	GMIP	19	19744710	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	406579	19744710	39384273	1280	13271										
GMIP	51291	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	chr19	19748233	19748233	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ggcggcgggggcggcggggcCtcgggccgcagcgcccgtac	22	15	0	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	GMIP-91	NM_016573	exon11	c.G1065C	p.E355D	CGGGGCCTCGGGC	.	24	9	11	0	.	1	1	0	0	0	G	19748233	C	G	19748233	3	3	62	1	0	0	0	0	1	0	0	0	6511	680	24	3	1891	3	GMIP	19	19748233	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	3523	19748233	39380750	1281	13272										
ZNF486	90649	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	20307780	20307780	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ttgtttctttcagttgtgtgTtctcattttgcccaagacct	7	9	3	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ZNF486-47	NM_052852	exon4	c.T261C	p.C87C	TGTGTGTTCTCAT	.	93	41	80	0	.	0	0	0	0	0	C	20307780	T	C	20307780	2	2	62	1	0	0	0	0	0	0	0	1	17976	1731	60	4		4	ZNF486	19	20307780	Silent	SNP	T	TCGA-PK-A5HB-01A-11D-A29I-10	559547	20307780	38821203	1282	13273										
RGS9BP	388531	hgsc.bcm.edu	37	chr19	33167455	33167455	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	tggaagcggacatgcgacgcGcgctggagctgggcgccgcg	19	12	0	0	rs259290	byfrequency	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	RGS9BP-90	NM_207391	exon1	c.G286T	p.A96S	CGACGCGCGCTGG	.	9	5	0	0	G|0.540;T|0.460	0	0	0	0	0	T	33167455	G	T	33167455	3	4	62	1	0	0	0	0	1	0	0	0	13349	1087	38	2	288	2	RGS9BP	19	33167455	Missense_Mutation	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	12859675	33167455	25961528	1283	13274										
LRP3	4037	hgsc.bcm.edu	37	chr19	33696354	33696354	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	agcggggcgcgctccacgcgCtgcctgcctgtggagcggcg	18	15	0	0	rs3745977	byfrequency	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	LRP3-92	NM_002333	exon5	c.C678T	p.R226R	CACGCGCTGCCTG	.	38	21	1	0	C|0.945;T|0.055	25	9	16	0	0	T	33696354	C	T	33696354	2	4	62	1	0	0	0	0	0	0	0	1	8985	784	28	3		3	LRP3	19	33696354	Silent	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	528899	33696354	25432629	1284	13275										
CHST8	64377	hgsc.bcm.edu	37	chr19	34263134	34263134	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	acgctggatggccgctgggtCagcctgcaccggagccagca	15	14	1	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CHST8-156	NM_001127895	exon5	c.C441T	p.V147V	CTGGGTCAGCCTG	.	54	30	0	0	.	0	0	0	0	0	T	34263134	C	T	34263134	2	4	62	1	0	0	0	0	0	0	0	1	3416	813	29	3		3	CHST8	19	34263134	Silent	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	566780	34263134	24865849	1285	13276										
LSM14A	26065	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	34687595	34687595	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	atgggttcttatggacctttCggcaggatgcccacatacag	11	10	1	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	LSM14A-91	NM_001114093	exon3	c.C342T	p.F114F	ACCTTTCGGCAGG	.	121	46	156	1	.	76	37	39	0	0	T	34687595	C	T	34687595	2	4	62	1	0	0	0	0	0	0	0	1	9081	883	31	1		1	LSM14A	19	34687595	Silent	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	424461	34687595	24441388	1286	13277										
UBA2	10054	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	34941214	34941214	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ctgttgacaatggacaaactAtggcggaaaaggaaacctcc	10	9	0	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	UBA2-227	NM_005499	exon9	c.A816G	p.L272L	CAAACTATGGCGG	.	195	85	131	0	.	78	47	31	0	0	G	34941214	A	G	34941214	2	3	62	1	0	0	0	0	0	0	0	1	16866	436	16	4		4	UBA2	19	34941214	Silent	SNP	A	TCGA-PK-A5HB-01A-11D-A29I-10	253619	34941214	24187769	1287	13278										
LGI4	163175	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	35625482	35625482	+	Nonsense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ctcacacagggcgctgtcttTagagcaggagcagcgcaggg	15	11	2	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	LGI4-91	NM_139284	exon1	c.A103T	p.K35X	TGTCTTTAGAGCA	.	189	83	152	0	.	4	4	0	0	0	A	35625482	T	A	35625482	4	1	62	1	0	0	0	0	0	1	0	0	8777	1763	61	5	1546	5	LGI4	19	35625482	Nonsense_Mutation	SNP	T	TCGA-PK-A5HB-01A-11D-A29I-10	684268	35625482	23503501	1288	13279										
FFAR2	2867	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	35941567	35941567	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	aatgaggacaggggtgtgggTcaaggagaagggatgccaag	19	4	1	2	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	FFAR2-90	NM_005306	exon1	c.T951C	p.G317G	TGTGGGTCAAGGA	.	123	56	86	0	.	0	0	0	0	0	C	35941567	T	C	35941567	2	2	62	1	0	0	0	0	0	0	0	1	5847	1654	58	4		4	FFAR2	19	35941567	Silent	SNP	T	TCGA-PK-A5HB-01A-11D-A29I-10	316085	35941567	23187416	1289	13280										
DMKN	93099	hgsc.bcm.edu	37	chr19	36002386	36002386	+	Missense_Mutation	SNP	C	C	T													0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	tgccaccactgctgccgccaCtgctgccgccactgctgctg					rs117522133	byfrequency	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	DMKN-155	NM_001126058	exon5	c.G845A	p.S282N	CCGCCACTGCTGC	.	90	21	92	0	C|0.945;T|0.055	0	0	0	0	0	T	36002386	C	T	36002386	3	4	62	1	0	0	0	0	1	0	0	0	4593	565	20	3	950	3	DMKN	19	36002386	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	60819	36002386	23126597	1290	13281	147	2								
DMKN	93099	hgsc.bcm.edu	37	chr19	36002389	36002389	+	Missense_Mutation	SNP	C	C	T													0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	caccactgctgccgccactgCtgccgccactgctgctgcca					rs142519211	byfrequency	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	DMKN-155	NM_001126058	exon5	c.G842A	p.S281N	CCACTGCTGCCGC	.	90	18	92	0	C|0.957;T|0.043	0	0	0	0	0	T	36002389	C	T	36002389	3	4	62	1	0	0	0	0	1	0	0	0	4593	797	28	3	953	3	DMKN	19	36002389	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	3	36002389	23126594	1291	13282	147	2								
DMKN	93099	broad.mit.edu	37	chr19	36002401	36002401	+	Frame_Shift_Del	DEL	C	C	-													0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	cgccactgctgccgccactgCtgctgccactgctgctgcca					rs71940230	alternate_allele	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	DMKN-155	NM_001126058	exon5	c.830delG	p.S277fs	CCACTGCTGCTGC	.	81	8	85	0	.	0	0	0	0	0	-	36002401	C	-	36002401	7	5	62	1	0	1	0	1	0	0	0	0	4593	797	28	0	965	0	DMKN	19	36002401	Frame_Shift_Del	DEL	C	TCGA-PK-A5HB-01A-11D-A29I-10	12	36002401	23126582	1292	13283										
MLL4	8085	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr19	36210835	36210837	+	In_Frame_Del	DEL	CTT	CTT	-													0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	tggtgcaggcactgactgaaCttctccggcgggcccaggca					novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	CTT	CTT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	MLL4-697	NM_014727	exon3	c.586_588del	p.196_196del	ACTGAACTTCTCC	.	114	35	63	0	.	0	0	0	0	0	-	36210837	CTT	-	36210835	7	5	62	1	0	1	0	1	0	0	0	0	9651	565	20	0	596	0	MLL4	19	36210835	In_Frame_Del	DEL	CTT	TCGA-PK-A5HB-01A-11D-A29I-10	208434	36210835	22918148	1293	13284										
MLL4	8085	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr19	36223774	36223774	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	agggcccggcctcctgaggaCctgccatcggaaattgtgga	14	12	0	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	MLL4-697	NM_014727	exon28	c.C6324A	p.D2108E	TGAGGACCTGCCA	.	97	38	74	0	.	39	19	20	0	0	A	36223774	C	A	36223774	3	1	62	1	0	0	0	0	1	0	0	0	9651	506	18	3	6434	3	MLL4	19	36223774	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	12939	36223774	22905209	1294	13285										
WDR62	284403	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	36574056	36574056	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ggggagcgagaatgggacacCcatggacgtgaaagccgggg	19	8	0	2	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	WDR62-90	NM_173636	exon11	c.C1463G	p.P488R	GGACACCCATGGA	.	148	77	120	0	.	24	7	17	0	0	G	36574056	C	G	36574056	3	3	62	1	0	0	0	0	1	0	0	0	17351	623	22	3	1505	3	WDR62	19	36574056	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	350282	36574056	22554927	1295	13286										
COX7A1	1346	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr19	36643303	36643303	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	tgggggcctcacccgaagggCctgcattctgccttgtcctc	12	15	2	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	COX7A1-226	NM_001864	exon1	c.G7A	p.A3T	GAAGGGCCTGCAT	.	107	47	61	0	.	0	0	0	0	0	T	36643303	C	T	36643303	3	4	62	1	0	0	0	0	1	0	0	0	3785	739	26	3	248	3	COX7A1	19	36643303	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	69247	36643303	22485680	1296	13287										
ZNF567	163081	broad.mit.edu;bcgsc.ca	37	chr19	37210811	37210811	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ggtgagaaaccctacatttgTaaagaatgtgggaagtcctt	11	6	0	2	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ZNF567-90	NM_152603	exon4	c.T1092C	p.C364C	CATTTGTAAAGAA	.	59	34	52	2	.	3	0	3	0	0	C	37210811	T	C	37210811	2	2	62	1	0	0	0	0	0	0	0	1	18035	1644	57	4		4	ZNF567	19	37210811	Silent	SNP	T	TCGA-PK-A5HB-01A-11D-A29I-10	567508	37210811	21918172	1297	13288										
ZNF793	390927	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	38023351	38023351	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gggccctgtaccgggatgtgAtgctggaaacctatagcaac	13	10	0	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ZNF793-68	NM_001013659	exon6	c.A109G	p.M37V	GATGTGATGCTGG	.	175	60	108	1	.	10	7	3	0	0	G	38023351	A	G	38023351	3	3	62	1	0	0	0	0	1	0	0	0	18202	333	12	4	115	4	ZNF793	19	38023351	Missense_Mutation	SNP	A	TCGA-PK-A5HB-01A-11D-A29I-10	812540	38023351	21105632	1298	13289										
SIPA1L3	23094	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	38590772	38590772	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	aaggtgacggagcaactgctGaagctcgatgagcaaggggt	16	7	0	3	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SIPA1L3-91	NM_015073	exon5	c.G1836A	p.L612L	ACTGCTGAAGCTC	.	81	35	83	0	.	6	1	5	0	0	A	38590772	G	A	38590772	2	1	62	1	0	0	0	0	0	0	0	1	14366	1277	45	3		3	SIPA1L3	19	38590772	Silent	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	567421	38590772	20538211	1299	13290										
GGN	199720	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	38875168	38875168	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gtggttggtggatgtgctcaGcctagtgggggagggtagag	21	4	1	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	GGN-90	NM_152657	exon4	c.C1843T	p.L615L	TGCTCAGCCTAGT	.	84	41	69	0	.	0	0	0	0	0	A	38875168	G	A	38875168	2	1	62	1	0	0	0	0	0	0	0	1	6378	985	34	3		3	GGN	19	38875168	Silent	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	284396	38875168	20253815	1300	13291										
RYR1	6261	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	39070652	39070652	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	acctgggctggtatatggtgAtgtccctcttgggacactac	12	10	1	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	RYR1-100	NM_000540	exon100	c.A14395C	p.M4799L	ATGGTGATGTCCC	.	135	46	110	1	.	0	0	0	0	0	C	39070652	A	C	39070652	3	2	62	1	0	0	0	0	1	0	0	0	13803	333	12	5	14793	5	RYR1	19	39070652	Missense_Mutation	SNP	A	TCGA-PK-A5HB-01A-11D-A29I-10	195484	39070652	20058331	1301	13292										
LGALS7	3963	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr19	39262626	39262626	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gggggttgaaatgcagcgcgGcatcggagccctgctcctcc	15	13	0	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	LGALS7-158	NM_002307	exon3	c.C140T	p.A47V	AGCGCGGCATCGG	.	440	216	250	1	.	1	0	1	0	0	A	39262626	G	A	39262626	3	1	62	1	0	0	0	0	1	0	0	0	8768	1203	42	3	278	3	LGALS7	19	39262626	Missense_Mutation	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	191974	39262626	19866357	1302	13293										
LGALS7	3963	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr19	39262667	39262667	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ccgcacagcaggtttacatgGaacctggaagaggaggatgg	15	8	0	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	LGALS7-158	NM_002307	exon3	c.C99A	p.F33L	TACATGGAACCTG	.	303	184	200	1	.	0	0	0	0	0	T	39262667	G	T	39262667	3	4	62	1	0	0	0	0	1	0	0	0	8768	1165	41	3	319	3	LGALS7	19	39262667	Missense_Mutation	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	41	39262667	19866316	1303	13294										
FBXO17	115290	hgsc.bcm.edu	37	chr19	39440918	39440918	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	agcgcgtccagggccagggaTgggtccgccggcagccgtcg	18	14	0	0	rs2304117	byfrequency	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	FBXO17-226	NM_148169	exon2	c.A69G	p.P23P	CAGGGATGGGTCC	.	25	5	2	0	T|0.545;C|0.455	1	1	0	0	0	C	39440918	T	C	39440918	2	2	62	1	0	0	0	0	0	0	0	1	5749	1451	51	4		4	FBXO17	19	39440918	Silent	SNP	T	TCGA-PK-A5HB-01A-11D-A29I-10	178251	39440918	19688065	1304	13295										
PAPL	0	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	39591616	39591616	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ataagaaccgggcagcccggCcgtggatcatcactatgggg	14	11	2	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	.	NM_001004318	exon8	c.C835T	p.P279S	GCCCGGCCGTGGA	.	66	24	50	0	.	0	0	0	0	0	T	39591616	C	T	39591616	3	4	62	1	0	0	0	0	1	0	0	0	11456	739	26	3	861	3	PAPL	19	39591616	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	150698	39591616	19537367	1305	13296										
LRFN1	57622	hgsc.bcm.edu	37	chr19	39805934	39805934	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	cagaaagggcagggcagcggGcggcggcgagaggagggccg	23	9	0	2	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	LRFN1-70	NM_020862	exon1	c.C43T	p.P15S	CAGCGGGCGGCGG	.	43	16	6	0	.	1	1	0	0	0	A	39805934	G	A	39805934	3	1	62	1	0	0	0	0	1	0	0	0	8964	1203	42	3	2280	3	LRFN1	19	39805934	Missense_Mutation	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	214318	39805934	19323049	1306	13297										
AXL	558	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	41758838	41758838	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	acatggagacctacacagctTcctcctctattcccggctcg	7	16	1	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	AXL-1403	NM_021913	exon16	c.T1892C	p.F631S	ACAGCTTCCTCCT	.	63	26	59	0	.	9	7	2	0	0	C	41758838	T	C	41758838	3	2	62	1	0	0	0	0	1	0	0	0	1239	1783	62	4	1954	4	AXL	19	41758838	Missense_Mutation	SNP	T	TCGA-PK-A5HB-01A-11D-A29I-10	1952904	41758838	17370145	1307	13298										
CEACAM5	1048	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	42224956	42224956	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	cccgcagtattcttggcgtaTcaatgggataccgcagcaac	10	12	2	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CEACAM5-92	NM_004363	exon8	c.T1886C	p.I629T	GGCGTATCAATGG	.	317	153	279	0	.	0	0	0	0	0	C	42224956	T	C	42224956	3	2	62	1	0	0	0	0	1	0	0	0	3201	1435	50	4	1916	4	CEACAM5	19	42224956	Missense_Mutation	SNP	T	TCGA-PK-A5HB-01A-11D-A29I-10	466118	42224956	16904027	1308	13299										
MEGF8	1954	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr19	42838298	42838298	+	Frame_Shift_Del	DEL	G	G	-													0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gtgtgcctgcgagccgggctGggggggtcctgactgtggcc					novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	MEGF8-23	NM_001271938	exon3	c.491delG	p.W164fs	CGGGCTGGGGGGG	.	131	48	29	0	.	0	0	0	0	0	-	42838298	G	-	42838298	7	5	62	1	0	1	0	1	0	0	0	0	9491	1357	47	0	501	0	MEGF8	19	42838298	Frame_Shift_Del	DEL	G	TCGA-PK-A5HB-01A-11D-A29I-10	613342	42838298	16290685	1309	13300										
MEGF8	1954	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	42861562	42861562	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	cctccatccctcaggcccccCagaccgtggagctgccagcc	9	21	1	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	MEGF8-23	NM_001271938	exon28	c.C4837A	p.Q1613K	GCCCCCCAGACCG	.	84	37	53	0	.	0	0	0	0	0	A	42861562	C	A	42861562	3	1	62	1	0	0	0	0	1	0	0	0	9491	595	21	3	4742	3	MEGF8	19	42861562	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	23264	42861562	16267421	1310	13301										
PSG6	5675	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	43411912	43411912	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	agccaccaaatgtaggtgtaGttccgactcttaggttcaca	9	10	2	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PSG6-92	NM_001031850	exon4	c.C801A	p.N267K	GGTGTAGTTCCGA	.	156	52	162	0	.	0	0	0	0	0	T	43411912	G	T	43411912	3	4	62	1	0	0	0	0	1	0	0	0	12691	1020	36	3	557	3	PSG6	19	43411912	Missense_Mutation	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	550350	43411912	15717071	1311	13302										
PSG7	5676	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	43439806	43439806	+	RNA	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	cagatgtggccagtaagattCtggggcaaattgtggacaag	14	6	1	2	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	.	.	.	.	.	AAGATTCTGGGGC	.	200	97	180	0	.	0	0	0	0	0	A	43439806	C	A	43439806	1	1	62	0	1	0	0	0	0	0	0	0	12692	912	32	3		3	PSG7	19	43439806	RNA	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	27894	43439806	15689177	1312	13303										
IRGQ	126298	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr19	44096194	44096194	+	Frame_Shift_Del	DEL	G	G	-													0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ctcctcactgggcaggctcaGggggtgccagcacagcctca					novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	IRGQ-92	NM_001007561	exon3	c.1856delC	p.P619fs	GGCTCAGGGGGTG	.	252	123	92	0	.	0	0	0	0	0	-	44096194	G	-	44096194	7	5	62	1	0	1	0	1	0	0	0	0	7860	1000	35	0	19	0	IRGQ	19	44096194	Frame_Shift_Del	DEL	G	TCGA-PK-A5HB-01A-11D-A29I-10	656388	44096194	15032789	1313	13304										
IRGQ	126298	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	44097165	44097165	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	aggatgagggcgtcgtagtgCgttgggtgagaggcggcggc	22	6	0	2	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	IRGQ-92	NM_001007561	exon3	c.G885A	p.T295T	GTAGTGCGTTGGG	.	168	61	36	0	.	13	5	8	0	0	T	44097165	C	T	44097165	2	4	62	1	0	0	0	0	0	0	0	1	7860	755	27	1		1	IRGQ	19	44097165	Silent	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	971	44097165	15031818	1314	13305										
IRGC	56269	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	44223111	44223111	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gcaggtagacttcagccgctAtgacttcttcctgctggtct	10	12	3	2	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	IRGC-70	NM_019612	exon2	c.A401G	p.Y134C	GCCGCTATGACTT	.	104	45	59	0	.	1	1	0	0	0	G	44223111	A	G	44223111	3	3	62	1	0	0	0	0	1	0	0	0	7859	449	16	4	403	4	IRGC	19	44223111	Missense_Mutation	SNP	A	TCGA-PK-A5HB-01A-11D-A29I-10	125946	44223111	14905872	1315	13306										
IRGC	56269	broad.mit.edu	37	chr19	44223898	44223898	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	aacgagatggctgaggacgcCcagcgtgtccgcatcaaggc	14	12	1	2	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	IRGC-70	NM_019612	exon2	c.C1188A	p.A396A	GGACGCCCAGCGT	.	148	5	111	0	.	0	0	0	0	0	A	44223898	C	A	44223898	2	1	62	1	0	0	0	0	0	0	0	1	7859	610	22	3		3	IRGC	19	44223898	Silent	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	787	44223898	14905085	1316	13307										
ZNF155	7711	bcgsc.ca	37	chr19	44501240	44501240	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	aatgtggaaagggattttatAcaaattcacaactgtcttcc	7	7	2	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ZNF155-154	NM_001260488	exon6	c.A1264G	p.T422A	TTTTATACAAATT	.	144	66	99	2	.	0	0	0	0	0	G	44501240	A	G	44501240	3	3	62	1	0	0	0	0	1	0	0	0	17773	391	14	4	1245	4	ZNF155	19	44501240	Missense_Mutation	SNP	A	TCGA-PK-A5HB-01A-11D-A29I-10	277342	44501240	14627743	1317	13308										
ZNF227	7770	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr19	44739706	44739706	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	agtgccatcagagagtccacActgaagaaaaaccatacaaa	7	10	1	3	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ZNF227-91	NM_182490	exon6	c.A1123G	p.T375A	GTCCACACTGAAG	.	61	5	56	0	.	5	4	0	0	1	G	44739706	A	G	44739706	3	3	62	1	0	0	0	0	1	0	0	0	17818	159	6	4	1137	4	ZNF227	19	44739706	Missense_Mutation	SNP	A	TCGA-PK-A5HB-01A-11D-A29I-10	238466	44739706	14389277	1318	13309										
APOE	348	hgsc.bcm.edu	37	chr19	45411941	45411941	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gcgcggacatggaggacgtgTgcggccgcctggtgcagtac	18	11	0	0	rs429358	byfrequency	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	APOE-90	NM_000041	exon4	c.T388C	p.C130R	GACGTGTGCGGCC	.	94	31	2	0	T|0.861;C|0.139	42	33	9	0	0	C	45411941	T	C	45411941	3	2	62	1	0	0	0	0	1	0	0	0	802	1696	59	4	398	4	APOE	19	45411941	Missense_Mutation	SNP	T	TCGA-PK-A5HB-01A-11D-A29I-10	672235	45411941	13717042	1319	13310										
KLC3	147700	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	45851316	45851316	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gcagggccgctatgaggtggCggtgcctctgtgccgccagg	18	12	1	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	KLC3-91	NM_177417	exon5	c.C677T	p.A226V	AGGTGGCGGTGCC	.	323	157	172	1	.	2	2	0	0	0	T	45851316	C	T	45851316	3	4	62	1	0	0	0	0	1	0	0	0	8356	768	27	1	691	1	KLC3	19	45851316	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	439375	45851316	13277667	1320	13311										
ERCC1	2067	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	45924593	45924593	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	cggcgtaggtctgaggggccGcctgggccgaggtgtccaca	18	12	1	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ERCC1-659	NM_001983	exon3	c.C164T	p.A55V	GGGGCCGCCTGGG	.	89	36	93	1	.	192	88	104	0	0	A	45924593	G	A	45924593	3	1	62	1	0	0	0	0	1	0	0	0	5225	1087	38	1	890	1	ERCC1	19	45924593	Missense_Mutation	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	73277	45924593	13204390	1321	13312										
VASP	7408	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	46024603	46024603	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gtgggccccctccacccccaGcacttcccacctggtcggtc	9	21	0	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	VASP-514	NM_003370	exon4	c.G367A	p.A123T	CCCCCAGCACTTC	.	60	32	77	0	.	53	34	19	0	0	A	46024603	G	A	46024603	3	1	62	1	0	0	0	0	1	0	0	0	17166	971	34	3	381	3	VASP	19	46024603	Missense_Mutation	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	100010	46024603	13104380	1322	13313										
ZC3H4	23211	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	47572589	47572589	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ccctggcagctcttcgtagtGcccgtagtcctctgtggcag	12	14	2	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ZC3H4-74	NM_015168	exon14	c.C2158T	p.H720Y	CGTAGTGCCCGTA	.	51	18	45	0	.	0	0	0	0	0	A	47572589	G	A	47572589	3	1	62	1	0	0	0	0	1	0	0	0	17607	1319	46	3	1761	3	ZC3H4	19	47572589	Missense_Mutation	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	1547986	47572589	11556394	1323	13314										
DHX34	9704	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	47876940	47876940	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gactgtacgaaatggccaacCttcggcgccagttcaaggtg	12	11	1	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	DHX34-231	NM_014681	exon9	c.C2047T	p.L683F	GCCAACCTTCGGC	.	134	44	80	0	.	7	4	3	0	0	T	47876940	C	T	47876940	3	4	62	1	0	0	0	0	1	0	0	0	4518	681	24	3	2077	3	DHX34	19	47876940	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	304351	47876940	11252043	1324	13315										
CARD8	22900	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	48734920	48734921	+	Missense_Mutation	DNP	TA	TA	AT													0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gcatcttccattcttacctgTatctgtttgtgctcttatca					novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	TA	TA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CARD8-227	NM_001184900	exon5	c.T538A	p.Y180I	ACCTGTATCTGTT	.	64	0	52	0	.	0	0	0	0	0	AT	48734921	TA	AT	48734920	3	1	62	1	0	0	0	0	1	0	0	0	2657	1638	57	5	1102	5	CARD8	19	48734920	Missense_Mutation	DNP	TA	TCGA-PK-A5HB-01A-11D-A29I-10	857980	48734920	10394063	1325	13316										
KDELR1	10945	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	48894556	48894556	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	cgggacttccagattttgagCagtagcaagatgatggcgag	14	7	0	4	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	KDELR1-90	NM_006801	exon1	c.G60A	p.L20L	TTTGAGCAGTAGC	.	85	41	63	0	.	816	440	376	0	0	T	48894556	C	T	48894556	2	4	62	1	0	0	0	0	0	0	0	1	8140	697	25	3		3	KDELR1	19	48894556	Silent	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	159636	48894556	10234427	1326	13317										
LMTK3	114783	hgsc.bcm.edu	37	chr19	49002214	49002214	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	cgcagcgaggagtcgtcctcGggggggtgggggcagccaag	21	10	0	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	LMTK3-1357	NM_001080434	exon12	c.C2199T	p.P733P	GTCCTCGGGGGGG	.	13	7	3	0	.	1	0	1	0	0	A	49002214	G	A	49002214	2	1	62	1	0	0	0	0	0	0	0	1	8884	1103	39	1		1	LMTK3	19	49002214	Silent	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	107658	49002214	10126769	1327	13318										
NTN5	126147	hgsc.bcm.edu	37	chr19	49164952	49164952	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gtctagtgctccggcctgggActgggtgtgggtgcccgcac	17	12	1	0	rs281392	byfrequency	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	NTN5-136	NM_145807	exon7	c.T1452C	p.S484S	CCTGGGACTGGGT	.	10	6	0	0	A|0.464;G|0.536	0	0	0	0	0	G	49164952	A	G	49164952	2	3	62	1	0	0	0	0	0	0	0	1	10732	272	10	4		4	NTN5	19	49164952	Silent	SNP	A	TCGA-PK-A5HB-01A-11D-A29I-10	162738	49164952	9964031	1328	13319										
FGF21	26291	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr19	49261316	49261316	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	agtccccacaccgggaccctGcaccccgaggaccagctcgc	10	20	0	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	FGF21-522	NM_019113	exon3	c.G469A	p.A157T	GACCCTGCACCCC	.	174	62	114	0	.	1	0	1	0	0	A	49261316	G	A	49261316	3	1	62	1	0	0	0	0	1	0	0	0	5869	1319	46	3	479	3	FGF21	19	49261316	Missense_Mutation	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	96364	49261316	9867667	1329	13320										
RUVBL2	10856	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	49507564	49507564	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gcatggtgggtcagctggcgGcacggcgggcggctggcgtg	22	10	1	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	RUVBL2-227	NM_006666	exon4	c.G154A	p.A52T	CTGGCGGCACGGC	.	163	81	120	1	.	71	35	35	1	0	A	49507564	G	A	49507564	3	1	62	1	0	0	0	0	1	0	0	0	13788	1203	42	3	168	3	RUVBL2	19	49507564	Missense_Mutation	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	246248	49507564	9621419	1330	13321										
FCGRT	2217	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr19	50017380	50017380	+	Frame_Shift_Del	DEL	G	G	-													0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ctggaagctttcaaagctttGgggggaaaaggtgagattcc					novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	FCGRT-91	NM_001136019	exon3	c.315delG	p.L105fs	AGCTTTGGGGGGA	.	44	21	50	0	.	0	0	0	0	0	-	50017380	G	-	50017380	7	5	62	1	0	1	0	1	0	0	0	0	5805	1339	47	0	321	0	FCGRT	19	50017380	Frame_Shift_Del	DEL	G	TCGA-PK-A5HB-01A-11D-A29I-10	509816	50017380	9111603	1331	13322										
PRR12	57479	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr19	50100497	50100497	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	acggcaaggccgggccacctGaggacgagggggaccccaag	17	13	0	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PRR12-70	NM_020719	exon4	c.G2905A	p.E969K	CCACCTGAGGACG	.	59	24	20	0	.	17	11	6	0	0	A	50100497	G	A	50100497	3	1	62	1	0	0	0	0	1	0	0	0	12616	1291	45	3	2919	3	PRR12	19	50100497	Missense_Mutation	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	83117	50100497	9028486	1332	13323										
SCAF1	58506	broad.mit.edu	37	chr19	50158041	50158042	+	Frame_Shift_Ins	INS	-	-	C													0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	tctggggggctgcggttcgaINSccccccccacccccaccggg					novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SCAF1-68	NM_021228	exon9	c.3532_3533insC	p.T1178fs	GGTTCGACCCCCC	.	23	7	11	0	.	0	0	0	0	0	C	50158042	-	C	50158041	7	5	62	1	0	1	1	0	0	0	0	0	13903	275	10	0	3562	0	SCAF1	19	50158041	Frame_Shift_Ins	INS	-	TCGA-PK-A5HB-01A-11D-A29I-10	57544	50158041	8970942	1333	13324										
TSKS	60385	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	50245268	50245268	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	agggactccgtagacaactgCgacccctggctgggggaggg	17	11	0	1	rs201242813	alternate_allele	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TSKS-154	NM_021733	exon9	c.G1371A	p.S457S	CAACTGCGACCCC	.	75	33	75	0	C|0.999;A|0.000	0	0	0	0	0	T	50245268	C	T	50245268	2	4	62	1	0	0	0	0	0	0	0	1	16664	755	27	1		1	TSKS	19	50245268	Silent	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	87227	50245268	8883715	1334	13325										
VRK3	51231	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	50498494	50498494	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	acccatgcaggtagggatggCcagcagtggggtcgagtaca	16	9	0	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	VRK3-359	NM_016440	exon8	c.G718A	p.A240T	GGATGGCCAGCAG	.	229	96	156	0	.	39	23	16	0	0	T	50498494	C	T	50498494	3	4	62	1	0	0	0	0	1	0	0	0	17259	739	26	3	734	3	VRK3	19	50498494	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	253226	50498494	8630489	1335	13326										
POLD1	5424	hgsc.bcm.edu;bcgsc.ca	37	chr19	50918843	50918844	+	Frame_Shift_Del	DEL	GA	GA	-													0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	aggcccacgtggagctggccGagaggtcctgcgcggggcgg					novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	GA	GA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	POLD1-840	NM_002691	exon21	c.2713_2714del	p.905_905del	CTGGCCGAGAGGT	.	246	100	67	1	.	0	0	0	0	0	-	50918844	GA	-	50918843	7	5	62	1	0	1	0	1	0	0	0	0	12219	1059	37	0	2791	0	POLD1	19	50918843	Frame_Shift_Del	DEL	GA	TCGA-PK-A5HB-01A-11D-A29I-10	420349	50918843	8210140	1336	13327										
ASPDH	554235	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	chr19	51015773	51015773	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	tgcaaggcccagggctgtggGctgcagccaggggtccctca	16	13	1	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ASPDH-90	NM_001114598	exon5	c.C497T	p.A166V	CTGTGGGCTGCAG	.	28	10	13	0	.	1	0	1	0	0	A	51015773	G	A	51015773	3	1	62	1	0	0	0	0	1	0	0	0	1052	1203	42	3	366	3	ASPDH	19	51015773	Missense_Mutation	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	96930	51015773	8113210	1337	13328										
SHANK1	50944	hgsc.bcm.edu	37	chr19	51171188	51171188	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gcgggatccagggccttgccGgtcagcgggtgcaccagggg	19	12	1	0	rs750578		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SHANK1-153	NM_016148	exon22	c.C4029T	p.T1343T	CTTGCCGGTCAGC	.	4	4	0	0	G|0.661;A|0.339	0	0	0	0	0	A	51171188	G	A	51171188	2	1	62	1	0	0	0	0	0	0	0	1	14299	1103	39	1		1	SHANK1	19	51171188	Silent	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	155415	51171188	7957795	1338	13329										
SIGLEC9	27180	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	51630290	51630290	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	tgtctctttttctacagtatCcacagtcttgggaaatggct	8	9	3	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SIGLEC9-91	NM_001198558	exon4	c.C752T	p.S251F	CAGTATCCACAGT	.	63	21	62	0	.	0	0	0	0	0	T	51630290	C	T	51630290	3	4	62	1	0	0	0	0	1	0	0	0	14350	855	30	3	766	3	SIGLEC9	19	51630290	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	459102	51630290	7498693	1339	13330										
SIGLEC12	89858	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	52003397	52003397	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ggaatatcccatggtatatcGgccccttccttgaaccagga	9	12	0	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SIGLEC12-96	NM_053003	exon2	c.C585T	p.A195A	TATATCGGCCCCT	.	320	120	286	0	.	0	0	0	0	0	A	52003397	G	A	52003397	2	1	62	1	0	0	0	0	0	0	0	1	14343	1103	39	1		1	SIGLEC12	19	52003397	Silent	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	373107	52003397	7125586	1340	13331										
FPR3	2359	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	52327406	52327406	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	catccagcctgggcccagaaCcatcgcaccatgagtctggc	10	16	1	2	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	FPR3-501	NM_002030	exon2	c.C405T	p.N135N	CCAGAACCATCGC	.	255	91	216	0	.	1	1	0	0	0	T	52327406	C	T	52327406	2	4	62	1	0	0	0	0	0	0	0	1	6059	506	18	3		3	FPR3	19	52327406	Silent	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	324009	52327406	6801577	1341	13332										
ZNF415	55786	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	53612773	53612773	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gaaattatttggggtggtgaAactgaggaaccatggttgac	14	4	0	3	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ZNF415-91	NM_018355	exon4	c.T525A	p.V175V	TGGTGAAACTGAG	.	108	45	97	0	.	27	24	3	0	0	T	53612773	A	T	53612773	2	4	62	1	0	0	0	0	0	0	0	1	17929	1	1	5		5	ZNF415	19	53612773	Silent	SNP	A	TCGA-PK-A5HB-01A-11D-A29I-10	1285367	53612773	5516210	1342	13333										
ZNF331	55422	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	54080878	54080878	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	acatacgggcgagaagccgtAcaagtgcacagaatgtggga	14	8	0	2	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ZNF331-663	NM_001253801	exon5	c.A1064G	p.Y355C	AGCCGTACAAGTG	.	273	116	200	1	.	15	15	0	0	0	G	54080878	A	G	54080878	3	3	62	1	0	0	0	0	1	0	0	0	17886	391	14	4	1074	4	ZNF331	19	54080878	Missense_Mutation	SNP	A	TCGA-PK-A5HB-01A-11D-A29I-10	468105	54080878	5048105	1343	13334										
NLRP12	91662	broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr19	54312911	54312911	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	cccgtccgcgctgtaggtggCgccatacaagtgcagcacct	12	15	0	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	NLRP12-211	NM_144687	exon3	c.A2002A	p.S668S	AGGTGGCGCCATA	.	98	36	94	2	.	0	0	0	0	0	T	54312911	C	T	54312911	2	4	62	1	0	0	0	0	0	0	0	1	10503	768	27	1		1	NLRP12	19	54312911	Silent	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	232033	54312911	4816072	1344	13335										
CACNG7	59284	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	54445384	54445384	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	cttctaccgcccgcgtctcaGcgactgctccgactactcgg	9	18	2	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CACNG7-91	NM_031896	exon5	c.G665A	p.S222N	GTCTCAGCGACTG	.	328	137	142	1	.	0	0	0	0	0	A	54445384	G	A	54445384	3	1	62	1	0	0	0	0	1	0	0	0	2568	971	34	3	683	3	CACNG7	19	54445384	Missense_Mutation	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	132473	54445384	4683599	1345	13336										
TFPT	29844	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	54617860	54617860	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gcgccgacctagtgcctggtActttctgcgatttaattccc	9	13	1	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TFPT-658	NM_013342	exon2	c.T244C	p.Y82H	CCTGGTACTTTCT	.	153	66	89	1	.	64	28	36	0	0	G	54617860	A	G	54617860	3	3	62	1	0	0	0	0	1	0	0	0	15847	391	14	4	537	4	TFPT	19	54617860	Missense_Mutation	SNP	A	TCGA-PK-A5HB-01A-11D-A29I-10	172476	54617860	4511123	1346	13337										
LENG9	94059	hgsc.bcm.edu	37	chr19	54974329	54974329	+	Frame_Shift_Del	DEL	G	G	-													0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	aggcggccatggaagcggaaGaagcgcacgcggtgctgggg					novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	LENG9-68	NM_198988	exon1	c.447delC	p.F149fs	GCGGAAGAAGCGC	.	48	21	1	0	.	0	0	0	0	0	-	54974329	G	-	54974329	7	5	62	1	0	1	0	1	0	0	0	0	8747	933	33	0	1062	0	LENG9	19	54974329	Frame_Shift_Del	DEL	G	TCGA-PK-A5HB-01A-11D-A29I-10	356469	54974329	4154654	1347	13338										
NLRP2	55655	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	55494293	55494293	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	atcgtgtgcacgactctgaaGctgcagatggagaaggggga	16	7	1	3	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	NLRP2-120	NM_017852	exon6	c.G1227A	p.K409K	TCTGAAGCTGCAG	.	334	130	192	0	.	0	0	0	0	0	A	55494293	G	A	55494293	2	1	62	1	0	0	0	0	0	0	0	1	10506	962	34	3		3	NLRP2	19	55494293	Silent	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	519964	55494293	3634690	1348	13339										
EPS8L1	54869	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	55598758	55598758	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gcggtgagccccgaggagggGgcacgtgtgtacagccaggt	19	10	0	1	rs184296169	alternate_allele	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	EPS8L1-115	NM_133180	exon19	c.G2040T	p.G680G	GGAGGGGGCACGT	.	140	66	65	1	G|0.999;A|0.000	9	2	7	0	0	T	55598758	G	T	55598758	2	4	62	1	0	0	0	0	0	0	0	1	5208	1219	43	3		3	EPS8L1	19	55598758	Silent	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	104465	55598758	3530225	1349	13340										
TNNI3	7137	broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr19	55667611	55667611	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ccggccaactccagcggctgGcagcgggtgctcagagcgcg	16	15	1	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TNNI3-92	.	.	.	.	CGGCTGGCAGCGG	.	157	82	58	0	.	15	11	4	0	0	A	55667611	G	A	55667611	2	1	62	1	0	0	0	0	0	0	0	1	16365	1195	42	3		3	TNNI3	19	55667611	Silent	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	68853	55667611	3461372	1350	13341										
ZNF579	163033	hgsc.bcm.edu	37	chr19	56090309	56090309	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gaaggcttcgcggcagcgcaGacacagcagcgtccagtctg	14	13	1	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ZNF579-90	NM_152600	exon2	c.C697T	p.L233L	AGCGCAGACACAG	.	63	27	7	0	.	6	4	2	0	0	A	56090309	G	A	56090309	2	1	62	1	0	0	0	0	0	0	0	1	18048	933	33	3		3	ZNF579	19	56090309	Silent	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	422698	56090309	3038674	1351	13342										
ZNF784	147808	hgsc.bcm.edu	37	chr19	56133258	56133258	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	tctcccagccccggccccggCccgtggaagtgggtgcgctg	15	17	1	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ZNF784-68	NM_203374	exon2	c.G831A	p.G277G	CCCCGGCCCGTGG	.	40	16	5	0	.	1	1	0	0	0	T	56133258	C	T	56133258	2	4	62	1	0	0	0	0	0	0	0	1	18193	726	26	3		3	ZNF784	19	56133258	Silent	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	42949	56133258	2995725	1352	13343										
NLRP8	126205	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr19	56473553	56473553	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ttggggcctccttttttgaaGgctctcgcggccgcactgag	13	12	1	2	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	NLRP8-361	NM_176811	exon4	c.G2163C	p.K721N	TTTGAAGGCTCTC	.	142	75	115	0	.	0	0	0	0	0	C	56473553	G	C	56473553	3	2	62	1	0	0	0	0	1	0	0	0	10512	991	35	3	2177	3	NLRP8	19	56473553	Missense_Mutation	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	340295	56473553	2655430	1353	13344										
ZNF71	58491	broad.mit.edu	37	chr19	57133639	57133639	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ggcgagaagccctacgtgtgCggcgagtgcggcaaggcctt	17	11	0	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ZNF71-91	NM_021216	exon3	c.C984T	p.C328C	CGTGTGCGGCGAG	.	397	9	265	1	.	27	27	0	0	0	T	57133639	C	T	57133639	2	4	62	1	0	0	0	0	0	0	0	1	18151	776	27	1		1	ZNF71	19	57133639	Silent	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	660086	57133639	1995344	1354	13345										
ANGPT4	51378	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr20	896570	896570	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ttcttcagccactgcgtgttGttctgcagtgcctgctccag	10	13	3	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ANGPT4-92	NM_015985	exon1	c.C288A	p.N96K	CGTGTTGTTCTGC	.	85	71	117	1	.	0	0	0	0	0	T	896570	G	T	896570	3	4	62	1	0	0	0	0	1	0	0	0	612	1368	48	3	1259	3	ANGPT4	20	896570	Missense_Mutation	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10		896570	62128950	1355	13346										
FASTKD5	60493	hgsc.bcm.edu;bcgsc.ca	37	chr20	3128001	3128001	+	Frame_Shift_Del	DEL	C	C	-													0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	tggtgcttgacgtactggggCccccccagcatggtctccag					novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	FASTKD5-90	NM_021826	exon2	c.1716delG	p.G572fs	CTGGGGCCCCCCC	.	61	40	79	1	.	0	0	0	0	0	-	3128001	C	-	3128001	7	5	62	1	0	1	0	1	0	0	0	0	5707	726	26	0	582	0	FASTKD5	20	3128001	Frame_Shift_Del	DEL	C	TCGA-PK-A5HB-01A-11D-A29I-10	2231431	3128001	59897519	1356	13347										
ATRN	8455	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr20	3546042	3546042	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gacctgatctccaccatgatGtcaacagatttggccattca	7	12	3	3	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ATRN-154	NM_139321	exon11	c.G1834T	p.V612F	CATGATGTCAACA	.	44	28	80	0	.	26	2	24	0	0	T	3546042	G	T	3546042	3	4	62	1	0	0	0	0	1	0	0	0	1207	1377	48	3	1876	3	ATRN	20	3546042	Missense_Mutation	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	418041	3546042	59479478	1357	13348										
CENPB	1059	ucsc.edu;bcgsc.ca;mdanderson.org	37	chr20	3765726	3765726	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gtcctcagcctccaagccctCcgaggagctctcctcatctt	7	18	4	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CENPB-227	NM_001810	exon1	c.G1405T	p.E469X	AGCCCTCCGAGGA	.	145	112	167	4	.	90	9	81	0	0	A	3765726	C	A	3765726	4	1	62	1	0	0	0	0	0	1	0	0	3233	864	30	3	398	3	CENPB	20	3765726	Nonsense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	219684	3765726	59259794	1358	13349										
SEL1L2	80343	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr20	13850197	13850197	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	tgcgtcgggccaccctttttCcgcagctttctgaaagtatt	9	12	1	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SEL1L2-70	NM_001271539	exon14	c.G1207A	p.E403K	CTTTTTCCGCAGC	.	91	70	124	0	.	0	0	0	0	0	T	13850197	C	T	13850197	3	4	62	1	0	0	0	0	1	0	0	0	14046	864	30	3	887	3	SEL1L2	20	13850197	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	10084471	13850197	49175323	1359	13350										
CD93	22918	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr20	23065518	23065518	+	Frame_Shift_Del	DEL	G	G	-													0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gaagcacaagctgtcgcagaGggggccccccgggcccacac					novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CD93-153	NM_012072	exon1	c.1312delC	p.L438fs	CGCAGAGGGGGCC	.	56	43	84	0	.	0	0	0	0	0	-	23065518	G	-	23065518	7	5	62	1	0	1	0	1	0	0	0	0	3053	1000	35	0	654	0	CD93	20	23065518	Frame_Shift_Del	DEL	G	TCGA-PK-A5HB-01A-11D-A29I-10	9215321	23065518	39960002	1360	13351										
FAM83C	128876	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr20	33874418	33874418	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gtccagtttgctgtgacccaGggtcagccgtttctcatccc	10	14	2	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	FAM83C-92	NM_178468	exon4	c.C2164A	p.L722M	GACCCAGGGTCAG	.	193	21	172	0	.	0	0	0	0	0	T	33874418	G	T	33874418	3	4	62	1	0	0	0	0	1	0	0	0	5654	991	35	3	83	3	FAM83C	20	33874418	Missense_Mutation	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	10808900	33874418	29151102	1361	13352										
GDF5	8200	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr20	34022048	34022048	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gttcttgctgggtcgcttgcCctggcgagtggccagtgggg	18	10	1	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	GDF5-226	NM_000557	exon2	c.G1165T	p.G389C	GCTTGCCCTGGCG	.	146	63	114	1	.	0	0	0	0	0	A	34022048	C	A	34022048	3	1	62	1	0	0	0	0	1	0	0	0	6336	623	22	3	344	3	GDF5	20	34022048	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	147630	34022048	29003472	1362	13353										
DLGAP4	22839	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr20	35128865	35128866	+	In_Frame_Ins	INS	-	-	CTA													0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ccctggctcgagacctcctcINScagctccccagcagagccgg					novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	DLGAP4-94	NM_014902	exon9	c.2354_2355insCTA	p.S785delinsSY	CCTCCTCCAGCTC	.	218	40	82	0	.	0	0	0	0	0	CTA	35128866	-	CTA	35128865	7	5	62	1	0	1	1	0	0	0	0	0	4573	855	30	0	2512	0	DLGAP4	20	35128865	In_Frame_Ins	INS	-	TCGA-PK-A5HB-01A-11D-A29I-10	1106817	35128865	27896655	1363	13354										
NDRG3	57446	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr20	35288763	35288763	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	tagcaaagttgtatttatagGgttcaggcgggaattgcatt	12	4	1	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	NDRG3-91	NM_032013	exon13	c.C835T	p.P279S	TTATAGGGTTCAG	.	99	24	51	0	.	94	94	0	0	0	A	35288763	G	A	35288763	3	1	62	1	0	0	0	0	1	0	0	0	10282	1232	43	3	308	3	NDRG3	20	35288763	Missense_Mutation	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	159898	35288763	27736757	1364	13355										
NDRG3	57446	hgsc.bcm.edu	37	chr20	35350111	35350111	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	tagaagtggtttgatctctgTgagctgaacatcctgaagtt	11	6	1	5	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	NDRG3-91	NM_022477	exon2	c.A28G	p.T10A	TCTCTGTGAGCTG	.	100	6	72	0	.	30	30	0	0	0	C	35350111	T	C	35350111	3	2	62	1	0	0	0	0	1	0	0	0	10282	1696	59	4	1159	4	NDRG3	20	35350111	Missense_Mutation	SNP	T	TCGA-PK-A5HB-01A-11D-A29I-10	61348	35350111	27675409	1365	13356										
RPN2	6185	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr20	35833240	35833240	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	agaaggactggaaacaacagCgttatttgtggctgccacct	11	9	0	1	rs145802754		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	RPN2-93	NM_002951	exon6	c.C626T	p.A209V	CAACAGCGTTATT	.	205	87	167	1	C|1.000;T|0.000	473	256	216	0	1	T	35833240	C	T	35833240	3	4	62	1	0	0	0	0	1	0	0	0	13643	768	27	1	648	1	RPN2	20	35833240	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	483129	35833240	27192280	1366	13357										
RPN2	6185	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr20	35833294	35833294	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	tcatgtggggactgagccatCcattaaggaggtacctatct	11	9	2	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	RPN2-93	NM_002951	exon6	c.C680T	p.S227F	AGCCATCCATTAA	.	158	66	115	0	.	0	0	0	0	0	T	35833294	C	T	35833294	3	4	62	1	0	0	0	0	1	0	0	0	13643	855	30	3	702	3	RPN2	20	35833294	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	54	35833294	27192226	1367	13358										
TGM2	7052	broad.mit.edu;bcgsc.ca	37	chr20	36767875	36767875	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	tctcggcccacgctcttagtGctgatcttcagcccaacgat	8	15	4	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TGM2-155	NM_198951	exon9	c.C1281T	p.S427S	CTTAGTGCTGATC	.	308	18	247	2	.	65	63	2	0	0	A	36767875	G	A	36767875	2	1	62	1	0	0	0	0	0	0	0	1	15867	1310	46	3		3	TGM2	20	36767875	Silent	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	934581	36767875	26257645	1368	13359										
LBP	3929	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr20	36997687	36997687	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	tggaactccagggatcagtgCcctctgctccgctcctgaac	10	15	2	1	rs146665734	byfrequency	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	LBP-91	NM_004139	exon10	c.C1030T	p.P344S	TCAGTGCCCTCTG	.	86	35	59	0	C|1.000;T|0.000	0	0	0	0	0	T	36997687	C	T	36997687	3	4	62	1	0	0	0	0	1	0	0	0	8673	739	26	3	1068	3	LBP	20	36997687	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	229812	36997687	26027833	1369	13360										
ZHX3	23051	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr20	39830791	39830791	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gactcactgttctcagacacCtctgaataggtgtcacccat	7	13	4	2	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ZHX3-93	NM_015035	exon3	c.G2766T	p.E922D	AGACACCTCTGAA	.	164	69	129	0	.	25	16	9	0	0	A	39830791	C	A	39830791	3	1	62	1	0	0	0	0	1	0	0	0	17714	680	24	3	112	3	ZHX3	20	39830791	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	2833104	39830791	23194729	1370	13361										
PTPRT	11122	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr20	40713472	40713472	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ggaggtgctggactatacgaTaaccatcctgtggctgagaa	13	8	0	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PTPRT-664	NM_133170	exon30	c.A4043C	p.Y1348S	ATACGATAACCAT	.	169	78	136	0	.	0	0	0	0	0	G	40713472	T	G	40713472	3	3	62	1	0	0	0	0	1	0	0	0	12847	1406	49	5	351	5	PTPRT	20	40713472	Missense_Mutation	SNP	T	TCGA-PK-A5HB-01A-11D-A29I-10	882681	40713472	22312048	1371	13362										
JPH2	57158	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr20	42788359	42788359	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	cggaccttgttgctcttgagCtgcagcatgcggcgcttggt	14	11	1	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	JPH2-91	NM_020433	exon2	c.G1068A	p.Q356Q	CTTGAGCTGCAGC	.	163	74	90	1	.	2	0	2	0	0	T	42788359	C	T	42788359	2	4	62	1	0	0	0	0	0	0	0	1	7982	796	28	3		3	JPH2	20	42788359	Silent	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	2074887	42788359	20237161	1372	13363										
WISP2	8839	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr20	43348580	43348580	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	caccatgtacctgcccctggCcacctccccgatgcccgctg	8	21	0	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	WISP2-130	NM_003881	exon2	c.C103A	p.P35T	CCCTGGCCACCTC	.	117	52	98	0	.	100	90	10	0	0	A	43348580	C	A	43348580	3	1	62	1	0	0	0	0	1	0	0	0	17411	739	26	3	109	3	WISP2	20	43348580	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	560221	43348580	19676940	1373	13364										
KCNS1	3787	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr20	43726370	43726370	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	acttgagtacgcggaagatgCgcatgaggcggaacacctgc	14	10	0	3	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	KCNS1-90	NM_002251	exon4	c.G1043A	p.R348H	AAGATGCGCATGA	.	166	87	121	0	.	0	0	0	0	0	T	43726370	C	T	43726370	3	4	62	1	0	0	0	0	1	0	0	0	8109	768	27	1	545	1	KCNS1	20	43726370	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	377790	43726370	19299150	1374	13365										
DNTTIP1	116092	hgsc.bcm.edu	37	chr20	44420682	44420682	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gccgagcagccgcggggaccTagcggggccgagaggggcgg	22	12	0	1	rs2664591	byfrequency	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	DNTTIP1-91	NM_052951	exon1	c.T39C	p.P13P	GGGACCTAGCGGG	.	6	6	0	0	T|0.311;C|0.689	7	0	7	0	0	C	44420682	T	C	44420682	2	2	62	1	0	0	0	0	0	0	0	1	4692	1509	53	4		4	DNTTIP1	20	44420682	Silent	SNP	T	TCGA-PK-A5HB-01A-11D-A29I-10	694312	44420682	18604838	1375	13366										
ZSWIM3	140831	broad.mit.edu	37	chr20	44486488	44486488	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gagctgggcagctgcttcaaGacctatgaggacttcaagga	13	9	2	2	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ZSWIM3-92	NM_080752	exon1	c.G24A	p.K8K	CTTCAAGACCTAT	.	117	6	94	0	.	1	1	0	0	0	A	44486488	G	A	44486488	2	1	62	1	0	0	0	0	0	0	0	1	18279	933	33	3		3	ZSWIM3	20	44486488	Silent	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	65806	44486488	18539032	1376	13367										
ZNF335	63925	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr20	44586256	44586256	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	tgccccccagttcccgctgaGcactcatgttcagcagaaga	9	15	2	3	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ZNF335-94	NM_022095	exon17	c.C2411T	p.A804V	CGCTGAGCACTCA	.	119	31	108	1	.	3	2	1	0	0	A	44586256	G	A	44586256	3	1	62	1	0	0	0	0	1	0	0	0	17889	971	34	3	1665	3	ZNF335	20	44586256	Missense_Mutation	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	99768	44586256	18439264	1377	13368										
ZMYND8	23613	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr20	45865241	45865241	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gacgtggatgggctctgtgtGatctccttctgctggacagc	14	10	3	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ZMYND8-252	NM_183047	exon16	c.C2547T	p.I849I	CTGTGTGATCTCC	.	139	64	108	0	.	21	11	10	0	0	A	45865241	G	A	45865241	2	1	62	1	0	0	0	0	0	0	0	1	17748	1280	45	3		3	ZMYND8	20	45865241	Silent	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	1278985	45865241	17160279	1378	13369										
KCNB1	3745	ucsc.edu;bcgsc.ca	37	chr20	47991197	47991197	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	atgcggagaattcgcatgatGcggaagatctggaccacgcg	14	9	1	3	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	KCNB1-92	NM_004975	exon2	c.C900A	p.R300R	CATGATGCGGAAG	.	202	84	192	2	.	0	0	0	0	0	T	47991197	G	T	47991197	2	4	62	1	0	0	0	0	0	0	0	1	8033	1306	46	3		3	KCNB1	20	47991197	Silent	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	2125956	47991197	15034323	1379	13370										
TMEM189	387521	hgsc.bcm.edu	37	chr20	48770159	48770159	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	cagctgctggcccggccagtTctcggcgcccgccatggcca	13	18	1	0	rs232733		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TMEM189-22	NM_199129	exon1	c.A16G	p.N6D	GCCAGTTCTCGGC	.	9	8	0	0	C|0.999;T|0.001	3	0	3	0	0	C	48770159	T	C	48770159	3	2	62	1	0	0	0	0	1	0	0	0	16148	1783	62	4	820	4	TMEM189	20	48770159	Missense_Mutation	SNP	T	TCGA-PK-A5HB-01A-11D-A29I-10	778962	48770159	14255361	1380	13371										
ADNP	23394	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr20	49508387	49508387	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	catcgtcttggtcaacctcaCtatcagatgcattgtgcatt	7	11	4	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ADNP-92	NM_015339	exon5	c.G2864C	p.S955T	ACCTCACTATCAG	.	257	97	247	0	.	104	50	54	0	0	G	49508387	C	G	49508387	3	3	62	1	0	0	0	0	1	0	0	0	323	565	20	3	448	3	ADNP	20	49508387	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	738228	49508387	13517133	1381	13372										
ZFP64	55734	broad.mit.edu;bcgsc.ca	37	chr20	50769338	50769338	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gggctgcttgctggggtcgaTctgaaactggagaacggtca	16	8	2	2	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ZFP64-155	NM_018197	exon6	c.A1393T	p.I465F	GGTCGATCTGAAA	.	108	40	83	2	.	9	3	6	0	0	A	50769338	T	A	50769338	3	1	62	1	0	0	0	0	1	0	0	0	17689	1435	50	5	1847	5	ZFP64	20	50769338	Missense_Mutation	SNP	T	TCGA-PK-A5HB-01A-11D-A29I-10	1260951	50769338	12256182	1382	13373										
TSHZ2	128553	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr20	51872146	51872146	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	cggagcccttgcgctcacctTcctgctccagcccaagttca	8	18	2	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TSHZ2-232	NM_173485	exon2	c.T2149C	p.S717P	TCACCTTCCTGCT	.	136	55	106	1	.	9	5	4	0	0	C	51872146	T	C	51872146	3	2	62	1	0	0	0	0	1	0	0	0	16662	1783	62	4	2155	4	TSHZ2	20	51872146	Missense_Mutation	SNP	T	TCGA-PK-A5HB-01A-11D-A29I-10	1102808	51872146	11153374	1383	13374										
GNAS	2778	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr20	57429537	57429537	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	agccgatcctgactccggggCaaccccagaagatcccgact	10	16	0	3	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	GNAS-4767	NM_080425	exon1	c.C1217A	p.A406E	CCGGGGCAACCCC	.	53	22	24	0	.	0	0	0	0	0	A	57429537	C	A	57429537	3	1	62	1	0	0	0	0	1	0	0	0	6530	711	25	3	1961	3	GNAS	20	57429537	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	5557391	57429537	5595983	1384	13375										
SS18L1	26039	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr20	60738545	60738545	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	cagcagcaggcggccacgtcGcactacagctcggcgcaggg	15	15	0	0	rs149920292	byfrequency	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SS18L1-660	NM_198935	exon6	c.G588A	p.S196S	CACGTCGCACTAC	.	169	73	61	0	G|0.999;A|0.001	7	4	3	0	0	A	60738545	G	A	60738545	2	1	62	1	0	0	0	0	0	0	0	1	15213	1074	38	1		1	SS18L1	20	60738545	Silent	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	3309008	60738545	2286975	1385	13376										
LAMA5	3911	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr20	60887715	60887715	+	Frame_Shift_Del	DEL	C	C	-													0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gcagctggtcgggcggcacgCcccccaggtagtaggcgtcg					novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	LAMA5-93	NM_005560	exon67	c.9200delG	p.G3067fs	GGCACGCCCCCCA	.	245	83	66	0	.	0	0	0	0	0	-	60887715	C	-	60887715	7	5	62	1	0	1	0	1	0	0	0	0	8631	739	26	0	1943	0	LAMA5	20	60887715	Frame_Shift_Del	DEL	C	TCGA-PK-A5HB-01A-11D-A29I-10	149170	60887715	2137805	1386	13377										
OGFR	11054	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr20	61444339	61444339	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	tggccgacaaggtgaggaagCggaggaaggtggatgagggt	21	4	0	2	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	OGFR-68	NM_007346	exon7	c.C1372T	p.R458W	AGGAAGCGGAGGA	.	170	61	84	1	.	23	14	9	0	0	T	61444339	C	T	61444339	3	4	62	1	0	0	0	0	1	0	0	0	10872	759	27	1	1398	1	OGFR	20	61444339	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	556624	61444339	1581181	1387	13378										
DIDO1	11083	broad.mit.edu	37	chr20	61511207	61511207	+	Frame_Shift_Del	DEL	G	G	-													0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	agcggtccttccggtgctgcGgggggtggctgggaagctcc					novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	DIDO1-96	NM_001193369	exon16	c.6101delC	p.P2034fs	TGCTGCGGGGGGT	.	15	7	4	0	.	0	0	0	0	0	-	61511207	G	-	61511207	7	5	62	1	0	1	0	1	0	0	0	0	4533	1116	39	0	625	0	DIDO1	20	61511207	Frame_Shift_Del	DEL	G	TCGA-PK-A5HB-01A-11D-A29I-10	66868	61511207	1514313	1388	13379										
SRMS	6725	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr20	62178771	62178773	+	In_Frame_Del	DEL	AGA	AGA	-													0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	cgccggccagatcttgtcccAgaagaaggacaggaaggcca					novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	AGA	AGA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SRMS-521	NM_080823	exon1	c.44_46del	p.15_16del	TGTCCCAGAAGAA	.	131	0	29	0	.	0	0	0	0	0	-	62178773	AGA	-	62178771	7	5	62	1	0	1	0	1	0	0	0	0	15189	188	7	0	1452	0	SRMS	20	62178771	In_Frame_Del	DEL	AGA	TCGA-PK-A5HB-01A-11D-A29I-10	667564	62178771	846749	1389	13380										
TPTE	7179	broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr21	10916394	10916394	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	aatcgaataaataatgaagtGttttataaagagtatccgtc	7	4	0	2	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TPTE-344	NM_199261	exon20	c.C1252T	p.H418Y	TGAAGTGTTTTAT	.	432	52	469	1	.	6	6	0	0	0	A	10916394	G	A	10916394	3	1	62	1	0	0	0	0	1	0	0	0	16468	1377	48	3	423	3	TPTE	21	10916394	Missense_Mutation	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10		10916394	37213501	1390	13381										
LIPI	149998	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr21	15481359	15481359	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	tttggattaagaaacacttcCtctctgtctttaagtacaat	5	8	2	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	LIPI-70	NM_198996	exon10	c.G1401A	p.E467E	CACTTCCTCTCTG	.	59	28	72	0	.	0	0	0	0	0	T	15481359	C	T	15481359	2	4	62	1	0	0	0	0	0	0	0	1	8849	680	24	3		3	LIPI	21	15481359	Silent	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	4564965	15481359	32648536	1391	13382										
NRIP1	8204	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr21	16337877	16337877	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gcactgtgattgtttgcagcAtcaacaatgttgtttttcat	8	7	2	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	NRIP1-186	NM_003489	exon4	c.T2637A	p.D879E	TGCAGCATCAACA	.	71	37	69	0	.	9	5	4	0	0	T	16337877	A	T	16337877	3	4	62	1	0	0	0	0	1	0	0	0	10681	214	8	5	843	5	NRIP1	21	16337877	Missense_Mutation	SNP	A	TCGA-PK-A5HB-01A-11D-A29I-10	856518	16337877	31792018	1392	13383										
ADAMTS1	9510	hgsc.bcm.edu	37	chr21	28217129	28217129	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ctcggaggggcgcccgagtgCgtccgacacggccagtagcg	17	14	0	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ADAMTS1-272	NM_006988	exon1	c.G145A	p.A49T	CGAGTGCGTCCGA	.	87	41	6	0	.	6	6	0	0	0	T	28217129	C	T	28217129	3	4	62	1	0	0	0	0	1	0	0	0	255	768	27	1	2794	1	ADAMTS1	21	28217129	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	11879252	28217129	19912766	1393	13384										
TIAM1	7074	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr21	32585718	32585718	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	acacgtttatttttaccttgCcatctggaacaatgtcatca	5	10	3	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TIAM1-724	NM_003253	exon11	c.G2213A	p.G738D	ACCTTGCCATCTG	.	78	36	71	0	.	0	0	0	0	0	T	32585718	C	T	32585718	3	4	62	1	0	0	0	0	1	0	0	0	15927	739	26	3	2638	3	TIAM1	21	32585718	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	4368589	32585718	15544177	1394	13385										
SON	6651	ucsc.edu;bcgsc.ca	37	chr21	34922970	34922970	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gccacctgtgatggcacaggAgttgccagggctgcctttgg	15	11	0	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SON-97	NM_032195	exon3	c.A1433G	p.E478G	CACAGGAGTTGCC	.	552	230	495	5	.	39	20	19	0	0	G	34922970	A	G	34922970	3	3	62	1	0	0	0	0	1	0	0	0	14961	304	11	4	1443	4	SON	21	34922970	Missense_Mutation	SNP	A	TCGA-PK-A5HB-01A-11D-A29I-10	2337252	34922970	13206925	1395	13386										
ITSN1	6453	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr21	35166743	35166743	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	caagaacgaaagatcatagaAttagaaaaacaaaaagaaga	7	4	1	6	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ITSN1-94	NM_001001132	exon17	c.A1923G	p.E641E	CATAGAATTAGAA	.	220	111	154	0	.	14	11	3	0	0	G	35166743	A	G	35166743	2	3	62	1	0	0	0	0	0	0	0	1	7947	98	4	4		4	ITSN1	21	35166743	Silent	SNP	A	TCGA-PK-A5HB-01A-11D-A29I-10	243773	35166743	12963152	1396	13387										
UMODL1	89766	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr21	43510406	43510406	+	Splice_Site	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gtcctgctctccttccctgtAgatgtcaatgagtgtttcta	8	11	3	2	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	UMODL1-93	NM_001199527	exon6	c.575-2A>T	.	CCCTGTAGATGTC	.	162	81	144	0	.	0	0	0	0	0	T	43510406	A	T	43510406	5	4	62	1	0	0	0	0	0	0	1	0	17018	434	15	5	811	5	UMODL1	21	43510406	Splice_Site	SNP	A	TCGA-PK-A5HB-01A-11D-A29I-10	8343663	43510406	4619489	1397	13388										
UMODL1	89766	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr21	43531012	43531012	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gacctggtgagccccatgggCggtggactgtctgcggcaac	16	12	1	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	UMODL1-93	NM_173568	exon11	c.C1680T	p.G560G	CATGGGCGGTGGA	.	293	145	241	0	.	0	0	0	0	0	T	43531012	C	T	43531012	2	4	62	1	0	0	0	0	0	0	0	1	17018	755	27	1		1	UMODL1	21	43531012	Silent	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	20606	43531012	4598883	1398	13389										
UBASH3A	53347	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr21	43864737	43864737	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ccgggaatgtggggattttgCccaactcgtgagaaaggtac	14	8	0	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	UBASH3A-93	NM_018961	exon14	c.C1832T	p.A611V	ATTTTGCCCAACT	.	86	39	61	0	.	2	0	2	0	0	T	43864737	C	T	43864737	3	4	62	1	0	0	0	0	1	0	0	0	16877	739	26	3	1886	3	UBASH3A	21	43864737	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	333725	43864737	4265158	1399	13390										
DNMT3L	29947	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr21	45666373	45666373	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	agcttggtgggccacttggcCgcgagcttcgagctctgctt	14	12	1	0	rs145238695	byfrequency	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	DNMT3L-228	NM_013369	exon12	c.G1071A	p.A357A	CTTGGCCGCGAGC	.	133	67	107	2	C|0.998;T|0.002	0	0	0	0	0	T	45666373	C	T	45666373	2	4	62	1	0	0	0	0	0	0	0	1	4689	639	23	1		1	DNMT3L	21	45666373	Silent	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	1801636	45666373	2463522	1400	13391										
PFKL	5211	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr21	45744513	45744513	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	cgccgcctacgtcttcgaggAccctttcaacatccacgact	7	17	2	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PFKL-251	NM_002626	exon17	c.A1790G	p.D597G	TCGAGGACCCTTT	.	124	53	80	0	.	184	112	72	0	0	G	45744513	A	G	45744513	3	3	62	1	0	0	0	0	1	0	0	0	11793	275	10	4	1856	4	PFKL	21	45744513	Missense_Mutation	SNP	A	TCGA-PK-A5HB-01A-11D-A29I-10	78140	45744513	2385382	1401	13392										
KRTAP10-2	386679	hgsc.bcm.edu;ucsc.edu	37	chr21	45970771	45970772	+	Missense_Mutation	DNP	CA	CA	TG													0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gcagatggacttgcagcagaCaggcttgcagcagacggaca					novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	CA	CA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	KRTAP10-2-135	NM_198693	exon1	c.T570C	p.V191I	GCAGACAGGCTTG	.	211	0	218	0	A|0.908;G|0.092	0	0	0	0	0	TG	45970772	CA	TG	45970771	3	4	62	1	0	0	0	0	1	0	0	0	8530	478	17	3	200	3	KRTAP10-2	21	45970771	Missense_Mutation	DNP	CA	TCGA-PK-A5HB-01A-11D-A29I-10	226258	45970771	2159124	1402	13393	148	2								
KRTAP10-2	386679	hgsc.bcm.edu;ucsc.edu	37	chr21	45970774	45970774	+	Missense_Mutation	SNP	G	G	A													0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gatggacttgcagcagacagGcttgcagcagacggacacac					rs76536096	byfrequency	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	KRTAP10-2-135	NM_198693	exon1	c.C568T	p.P190S	AGACAGGCTTGCA	.	210	32	214	0	G|0.917;A|0.083	0	0	0	0	0	A	45970774	G	A	45970774	3	1	62	1	0	0	0	0	1	0	0	0	8530	1203	42	3	203	3	KRTAP10-2	21	45970774	Missense_Mutation	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	3	45970774	2159121	1403	13394	148	2								
KRTAP10-2	386679	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr21	45971060	45971060	+	Frame_Shift_Del	DEL	G	G	-													0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	acgcagcaggcctgctggcaGggggaggaggtgcagcaagc					novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	KRTAP10-2-135	NM_198693	exon1	c.282delC	p.P94fs	CTGGCAGGGGGAG	.	268	86	112	0	.	0	0	0	0	0	-	45971060	G	-	45971060	7	5	62	1	0	1	0	1	0	0	0	0	8530	987	35	0	489	0	KRTAP10-2	21	45971060	Frame_Shift_Del	DEL	G	TCGA-PK-A5HB-01A-11D-A29I-10	286	45971060	2158835	1404	13395										
KRTAP10-4	386672	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr21	45994477	45994477	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ctgctgcaagcctgtgtgctGcaagcctgtcggctctgtgc	13	13	1	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	KRTAP10-4-90	NM_198687	exon1	c.G842A	p.C281Y	TGTGCTGCAAGCC	.	226	103	186	1	.	0	0	0	0	0	A	45994477	G	A	45994477	3	1	62	1	0	0	0	0	1	0	0	0	8532	1319	46	3	844	3	KRTAP10-4	21	45994477	Missense_Mutation	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	23417	45994477	2135418	1405	13396										
KRTAP10-7	386675	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr21	46020976	46020976	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ctgccagtcagcttgctgcaCctcctccccctgccagcagg	9	19	1	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	.	NM_198689	exon2	c.C440T	p.T147I	GCTGCACCTCCTC	.	439	170	428	1	.	0	0	0	0	0	T	46020976	C	T	46020976	3	4	62	1	0	0	0	0	1	0	0	0	8535	507	18	3	446	3	KRTAP10-7	21	46020976	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	26499	46020976	2108919	1406	13397										
KRTAP10-9	386676	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr21	46047555	46047555	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gtgctgtgcgcccacctgctCtgaggattcctattcatgct	10	13	2	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	.	NM_198690	exon1	c.C467T	p.S156F	CCTGCTCTGAGGA	.	341	165	321	2	.	0	0	0	0	0	T	46047555	C	T	46047555	3	4	62	1	0	0	0	0	1	0	0	0	8537	913	32	3	469	3	KRTAP10-9	21	46047555	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	26579	46047555	2082340	1407	13398										
POFUT2	23275	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr21	46689778	46689778	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	tctgacggcatctgtggccaCaaacaccttgtccagccggt	10	14	2	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	POFUT2-90	NM_015227	exon7	c.G988T	p.V330L	TGGCCACAAACAC	.	97	35	95	0	.	54	26	28	0	0	A	46689778	C	A	46689778	3	1	62	1	0	0	0	0	1	0	0	0	12213	478	17	3	452	3	POFUT2	21	46689778	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	642223	46689778	1440117	1408	13399										
COL18A1	80781	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr21	46917558	46917559	+	Frame_Shift_Ins	INS	-	-	C													0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ggcgccaaaggagaagtgggINScccccccggaccaccaggtg					novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	COL18A1-90	NM_030582	exon31	c.3206_3207insC	p.G1069fs	AAGTGGGCCCCCC	.	113	37	82	0	.	0	0	0	0	0	C	46917559	-	C	46917558	7	5	62	1	0	1	1	0	0	0	0	0	3681	1203	42	0	4147	0	COL18A1	21	46917558	Frame_Shift_Ins	INS	-	TCGA-PK-A5HB-01A-11D-A29I-10	227780	46917558	1212337	1409	13400										
PCBP3	54039	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr21	47321002	47321002	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	cgccatcttcaaggcctttgCcatgatcgcatacaagtttg	8	12	2	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PCBP3-227	NM_001130141	exon5	c.C314T	p.A105V	CCTTTGCCATGAT	.	75	28	60	0	.	3	1	2	0	0	T	47321002	C	T	47321002	3	4	62	1	0	0	0	0	1	0	0	0	11531	739	26	3	332	3	PCBP3	21	47321002	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	403444	47321002	808893	1410	13401										
PCNT	5116	hgsc.bcm.edu	37	chr21	47836750	47836750	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	caccatgtgcagaggacggcTgtggtaggtgcctgctctgc	15	11	1	1	rs61738290	byfrequency	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PCNT-141	NM_006031	exon30	c.T6918C	p.A2306A	GACGGCTGTGGTA	.	17	7	5	0	T|0.969;C|0.031	0	0	0	0	0	C	47836750	T	C	47836750	2	2	62	1	0	0	0	0	0	0	0	1	11619	1567	55	4		4	PCNT	21	47836750	Silent	SNP	T	TCGA-PK-A5HB-01A-11D-A29I-10	515748	47836750	293145	1411	13402										
PCNT	5116	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr21	47858133	47858133	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gacgtcctgctgaaagacaaTgtttccctcacaaaagcgct	8	12	1	2	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PCNT-141	NM_006031	exon41	c.T9156C	p.N3052N	AGACAATGTTTCC	.	292	112	220	1	.	30	8	22	0	0	C	47858133	T	C	47858133	2	2	62	1	0	0	0	0	0	0	0	1	11619	1461	51	4		4	PCNT	21	47858133	Silent	SNP	T	TCGA-PK-A5HB-01A-11D-A29I-10	21383	47858133	271762	1412	13403										
CCT8L2	150160	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr22	17073304	17073304	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ggccatagcaaggccggatgAcactggccagggtctggact	15	11	1	1	rs140831516	alternate_allele	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CCT8L2-69	NM_014406	exon1	c.T137C	p.V46A	CGGATGACACTGG	.	80	30	61	0	A|1.000;T|0.000	0	0	0	0	0	G	17073304	A	G	17073304	3	3	62	1	0	0	0	0	1	0	0	0	2967	275	10	4	1540	4	CCT8L2	22	17073304	Missense_Mutation	SNP	A	TCGA-PK-A5HB-01A-11D-A29I-10		17073304	34231262	1413	13404										
GAB4	128954	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr22	17472963	17472963	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	cacagaggttcaggttgatgGtgcgcaggggcttcttggag	17	7	2	2	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	GAB4-91	NM_001037814	exon2	c.C278A	p.T93N	TTGATGGTGCGCA	.	186	80	169	0	.	0	0	0	0	0	T	17472963	G	T	17472963	3	4	62	1	0	0	0	0	1	0	0	0	6170	1261	44	3	1482	3	GAB4	22	17472963	Missense_Mutation	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	399659	17472963	33831603	1414	13405										
IL17RA	23765	hgsc.bcm.edu	37	chr22	17590180	17590180	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ggcccctggctgacggtgccGcagtccggctggcactggcg	17	15	0	1	rs41323645		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	IL17RA-92	NM_014339	exon13	c.G2071A	p.A691T	GGTGCCGCAGTCC	.	11	8	0	0	G|0.897;A|0.103	2	1	1	0	0	A	17590180	G	A	17590180	3	1	62	1	0	0	0	0	1	0	0	0	7660	1087	38	1	2121	1	IL17RA	22	17590180	Missense_Mutation	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	117217	17590180	33714386	1415	13406										
MICAL3	57553	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr22	18301894	18301894	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ggacaggtgggagttggggcCcctacagggaaggaagacag	19	7	0	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	MICAL3-68	NM_015241	exon26	c.G3533T	p.G1178V	TGGGGCCCCTACA	.	57	27	40	0	.	0	0	0	0	0	A	18301894	C	A	18301894	3	1	62	1	0	0	0	0	1	0	0	0	9599	637	22	3	2503	3	MICAL3	22	18301894	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	711714	18301894	33002672	1416	13407										
TUBA8	51807	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr22	18609562	18609562	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	acttcccgctggtcacctacGcgcccatcatctctgccgag	8	18	3	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TUBA8-90	NM_018943	exon4	c.G817A	p.A273T	ACCTACGCGCCCA	.	260	20	171	0	.	10	10	0	0	0	A	18609562	G	A	18609562	3	1	62	1	0	0	0	0	1	0	0	0	16788	1087	38	1	831	1	TUBA8	22	18609562	Missense_Mutation	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	307668	18609562	32695004	1417	13408										
CLTCL1	8218	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr22	19207427	19207427	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	tgtctcctggatgggttggtCtcctcaaggacgtgagccca	13	11	3	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CLTCL1-230	NM_001835	exon18	c.G2886A	p.E962E	GTTGGTCTCCTCA	.	184	74	122	2	.	29	19	10	0	0	T	19207427	C	T	19207427	2	4	62	1	0	0	0	0	0	0	0	1	3573	912	32	3		3	CLTCL1	22	19207427	Silent	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	597865	19207427	32097139	1418	13409										
HIRA	7290	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr22	19373067	19373067	+	Frame_Shift_Del	DEL	C	C	-													0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	cctgatatcttcaagactctCcccgttgacaacgcctgcga					novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	HIRA-91	NM_003325	exon12	c.1306delG	p.E436fs	GACTCTCCCCGTT	.	146	60	123	0	.	0	0	0	0	0	-	19373067	C	-	19373067	7	5	62	1	0	1	0	1	0	0	0	0	7141	864	30	0	1803	0	HIRA	22	19373067	Frame_Shift_Del	DEL	C	TCGA-PK-A5HB-01A-11D-A29I-10	165640	19373067	31931499	1419	13410										
TRMT2A	27037	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr22	20100332	20100332	+	Frame_Shift_Del	DEL	G	G	-													0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	cagaggctgtggggggaaaaGgggggcgctaaggtcagccg					novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TRMT2A-153	NM_001257994	exon12	c.1654delC	p.L552fs	GGAAAAGGGGGGC	.	27	11	26	0	.	0	0	0	0	0	-	20100332	G	-	20100332	7	5	62	1	0	1	0	1	0	0	0	0	16603	1015	35	0		0	TRMT2A	22	20100332	Frame_Shift_Del	DEL	G	TCGA-PK-A5HB-01A-11D-A29I-10	727265	20100332	31204234	1420	13411										
SCARF2	91179	hgsc.bcm.edu	37	chr22	20780091	20780091	+	Silent	SNP	C	C	G													0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gtcgcctcctcgggcagcccCggggggcgcggcgttgggtc					rs77189880	bycluster;byfrequency;by1000genomes	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SCARF2-341	NM_153334	exon11	c.G2187C	p.P729P	CAGCCCCGGGGGG	.	13	13	0	0	C|0.138;G|0.862	0	0	0	0	0	G	20780091	C	G	20780091	2	3	62	1	0	0	0	0	0	0	0	1	13919	639	23	2		2	SCARF2	22	20780091	Silent	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	679759	20780091	30524475	1421	13412	149	2								
SCARF2	91179	hgsc.bcm.edu	37	chr22	20780097	20780097	+	Silent	SNP	G	G	C													0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	tcctcgggcagccccgggggGcgcggcgttgggtcgcgggt					rs759609	bycluster;byfrequency;by1000genomes	TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SCARF2-341	NM_153334	exon11	c.C2181G	p.R727R	CGGGGGGCGCGGC	.	14	14	0	0	G|0.826;C|0.174	0	0	0	0	0	C	20780097	G	C	20780097	2	2	62	1	0	0	0	0	0	0	0	1	13919	1190	42	3		3	SCARF2	22	20780097	Silent	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	6	20780097	30524469	1422	13413	149	2								
KLHL22	84861	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr22	20812147	20812147	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	agttggtggcagggtcgtagCgctccacagcattcaggtca	14	10	2	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	KLHL22-278	NM_032775	exon5	c.G1253A	p.R418H	TCGTAGCGCTCCA	.	154	69	161	0	.	31	18	13	0	0	T	20812147	C	T	20812147	3	4	62	1	0	0	0	0	1	0	0	0	8398	768	27	1	663	1	KLHL22	22	20812147	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	32050	20812147	30492419	1423	13414										
PI4KA	5297	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr22	21172828	21172828	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gggagggggcatgccgcgttCagggctgacctgaaacacac	16	11	1	2	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PI4KA-454	NM_058004	exon7	c.G799T	p.E267X	CGCGTTCAGGGCT	.	54	16	55	0	.	0	0	0	0	0	A	21172828	C	A	21172828	4	1	62	1	0	0	0	0	0	1	0	0	11902	835	29	3	5705	3	PI4KA	22	21172828	Nonsense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	360681	21172828	30131738	1424	13415										
AIFM3	150209	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr22	21334397	21334397	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	tggcctcaggccgtgccatcCggaagcgggaggtggagtga	18	10	1	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	AIFM3-280	NM_001146288	exon19	c.C1759T	p.R587W	GCCATCCGGAAGC	.	69	28	45	0	.	5	3	2	0	0	T	21334397	C	T	21334397	3	4	62	1	0	0	0	0	1	0	0	0	428	643	23	1	1829	1	AIFM3	22	21334397	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	161569	21334397	29970169	1425	13416										
HIC2	23119	hgsc.bcm.edu	37	chr22	21799659	21799659	+	Frame_Shift_Del	DEL	C	C	-													0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ggtccactggcatggggcggCccccccgcagccagcggctg					novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	HIC2-703	NM_015094	exon3	c.475delC	p.P159fs	GGGCGGCCCCCCC	.	42	14	9	1	.	0	0	0	0	0	-	21799659	C	-	21799659	7	5	62	1	0	1	0	1	0	0	0	0	7123	739	26	0	481	0	HIC2	22	21799659	Frame_Shift_Del	DEL	C	TCGA-PK-A5HB-01A-11D-A29I-10	465262	21799659	29504907	1426	13417										
CCDC116	164592	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr22	21988695	21988695	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	accccaacaactacccatccAgctccagctccatgtccaac	3	20	0	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CCDC116-92	NM_152612	exon3	c.A457T	p.S153C	CCATCCAGCTCCA	.	127	60	110	0	.	0	0	0	0	0	T	21988695	A	T	21988695	3	4	62	1	0	0	0	0	1	0	0	0	2759	188	7	5	463	5	CCDC116	22	21988695	Missense_Mutation	SNP	A	TCGA-PK-A5HB-01A-11D-A29I-10	189036	21988695	29315871	1427	13418										
CCDC116	164592	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr22	21989306	21989306	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gccctgcaaagcgtggtcagCcaggctgtggataagctccg	14	12	1	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CCDC116-92	NM_152612	exon4	c.C954T	p.S318S	GGTCAGCCAGGCT	.	144	63	104	0	.	1	1	0	0	0	T	21989306	C	T	21989306	2	4	62	1	0	0	0	0	0	0	0	1	2759	738	26	3		3	CCDC116	22	21989306	Silent	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	611	21989306	29315260	1428	13419										
MAPK1	5594	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr22	22153374	22153374	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ctgtcaggaaccctgtgtgaTcatggtctggatctgcaaca	11	10	4	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	MAPK1-1405	NM_002745	exon4	c.A536G	p.D179G	GTGTGATCATGGT	.	126	61	115	2	.	128	71	56	0	1	C	22153374	T	C	22153374	3	2	62	1	0	0	0	0	1	0	0	0	9299	1435	50	4	566	4	MAPK1	22	22153374	Missense_Mutation	SNP	T	TCGA-PK-A5HB-01A-11D-A29I-10	164068	22153374	29151192	1429	13420										
PPM1F	9647	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr22	22277674	22277674	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ctcctcggcgacacggagccCgctgccctgctgcctggtca	12	18	1	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PPM1F-292	NM_014634	exon8	c.G1156A	p.G386R	GGAGCCCGCTGCC	.	162	67	66	1	.	20	7	13	0	0	T	22277674	C	T	22277674	3	4	62	1	0	0	0	0	1	0	0	0	12371	652	23	1	212	1	PPM1F	22	22277674	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	124300	22277674	29026892	1430	13421										
BCR	613	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr22	23637231	23637231	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gaatttgagatagagctggaGggctcccagaccctgaggat	14	8	0	4	rs200598253		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	BCR-1349	NM_004327	exon16	c.G2901A	p.E967E	GCTGGAGGGCTCC	.	254	95	192	0	G|1.000;A|0.000	100	50	50	0	0	A	23637231	G	A	23637231	2	1	62	1	0	0	0	0	0	0	0	1	1389	991	35	3		3	BCR	22	23637231	Silent	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	1359557	23637231	27667335	1431	13422										
MIF	4282	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr22	24236679	24236679	+	Silent	SNP	A	A	T													0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	atcatgccgatgttcatcgtAaacaccaacgtgccccgcgc					novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	MIF-514	NM_002415	exon1	c.A18T	p.V6V	CATCGTAAACACC	.	357	144	170	0	.	1773	1772	0	0	1	T	24236679	A	T	24236679	2	4	62	1	0	0	0	0	0	0	0	1	9611	349	13	5		5	MIF	22	24236679	Silent	SNP	A	TCGA-PK-A5HB-01A-11D-A29I-10	599448	24236679	27067887	1432	13423	150	2								
MIF	4282	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr22	24236682	24236682	+	Missense_Mutation	SNP	C	C	A													0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	atgccgatgttcatcgtaaaCaccaacgtgccccgcgcctc					novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	MIF-514	NM_002415	exon1	c.C21A	p.N7K	CGTAAACACCAAC	.	354	144	168	0	.	1832	1826	4	1	0	A	24236682	C	A	24236682	3	1	62	1	0	0	0	0	1	0	0	0	9611	477	17	3	23	3	MIF	22	24236682	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	3	24236682	27067884	1433	13424	150	2								
MIF	4282	hgsc.bcm.edu	37	chr22	24237111	24237111	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	tgcggcctgctggccgagcgCctgcgcatcagcccggacag	15	16	1	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	MIF-514	NM_002415	exon2	c.C261T	p.R87R	CGAGCGCCTGCGC	.	30	17	2	0	.	4238	1876	2358	2	2	T	24237111	C	T	24237111	2	4	62	1	0	0	0	0	0	0	0	1	9611	726	26	3		3	MIF	22	24237111	Silent	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	429	24237111	27067455	1434	13425										
CRYBB3	1417	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr22	25601272	25601272	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	agtggatgatgacgtgcccaGcctgtgggctcatggcttcc	14	11	1	2	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CRYBB3-90	NM_004076	exon5	c.G413A	p.G138D	TGCCCAGCCTGTG	.	279	127	227	0	.	3	2	1	0	0	A	25601272	G	A	25601272	3	1	62	1	0	0	0	0	1	0	0	0	3918	971	34	3	427	3	CRYBB3	22	25601272	Missense_Mutation	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	1364161	25601272	25703294	1435	13426										
ASCC2	84164	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr22	30197089	30197089	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	cagcaggggtgtagggtctgGtttcatttctctgggtgggg	18	6	3	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ASCC2-90	NM_032204	exon15	c.C1579T	p.P527S	GGTCTGGTTTCAT	.	87	36	85	1	.	0	0	0	0	0	A	30197089	G	A	30197089	3	1	62	1	0	0	0	0	1	0	0	0	1033	1261	44	3	718	3	ASCC2	22	30197089	Missense_Mutation	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	4595817	30197089	21107477	1436	13427										
LIF	3976	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr22	30639991	30639991	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	tggaagggcgggaagtccgtCacgttggggccacatagctt	16	9	1	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	LIF-650	NM_001257135	exon2	c.G79A	p.D27N	GTCCGTCACGTTG	.	146	65	108	0	.	2	2	0	0	0	T	30639991	C	T	30639991	3	4	62	1	0	0	0	0	1	0	0	0	8802	813	29	3	354	3	LIF	22	30639991	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	442902	30639991	20664575	1437	13428										
PATZ1	23598	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr22	31740473	31740473	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ccagagtgggacagcttgtgCcggttaagatgatacacatc	12	9	0	3	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PATZ1-590	NM_032050	exon1	c.G1116A	p.R372R	CTTGTGCCGGTTA	.	191	84	125	1	.	20	11	9	0	0	T	31740473	C	T	31740473	2	4	62	1	0	0	0	0	0	0	0	1	11505	726	26	3		3	PATZ1	22	31740473	Silent	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	1100482	31740473	19564093	1438	13429										
PATZ1	23598	broad.mit.edu;bcgsc.ca	37	chr22	31741473	31741473	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gcaagagcacgtcgcagaagCgcccgccgtttttgcgctgc	13	14	0	2	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PATZ1-590	NM_032050	exon1	c.G116T	p.R39L	CAGAAGCGCCCGC	.	274	129	131	2	.	5	1	4	0	0	A	31741473	C	A	31741473	3	1	62	1	0	0	0	0	1	0	0	0	11505	768	27	2	2250	2	PATZ1	22	31741473	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	1000	31741473	19563093	1439	13430										
MCM5	4174	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr22	35815946	35815946	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	cgctacatcatcatgcggagCggggcccgtcagcacgagag	14	13	3	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	MCM5-228	NM_006739	exon14	c.C1773T	p.S591S	GCGGAGCGGGGCC	.	384	162	202	0	.	84	40	44	0	0	T	35815946	C	T	35815946	2	4	62	1	0	0	0	0	0	0	0	1	9418	767	27	1		1	MCM5	22	35815946	Silent	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	4074473	35815946	15488620	1440	13431										
APOL6	80830	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr22	36055125	36055125	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	cagctgctggaaagattatcTataatcttagaaacaccttg	7	8	2	2	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	APOL6-90	NM_030641	exon3	c.T514A	p.Y172N	ATTATCTATAATC	.	68	35	55	0	.	9	3	6	0	0	A	36055125	T	A	36055125	3	1	62	1	0	0	0	0	1	0	0	0	810	1522	53	5	520	5	APOL6	22	36055125	Missense_Mutation	SNP	T	TCGA-PK-A5HB-01A-11D-A29I-10	239179	36055125	15249441	1441	13432										
FOXRED2	80020	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr22	36902258	36902258	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gcttgcggtgccgcgggtagCgtgtgaagaagctgccgggc	19	10	0	2	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	FOXRED2-92	NM_001102371	exon2	c.G212A	p.R71H	GGGTAGCGTGTGA	.	166	68	104	0	.	21	14	7	0	0	T	36902258	C	T	36902258	3	4	62	1	0	0	0	0	1	0	0	0	6053	768	27	1	1874	1	FOXRED2	22	36902258	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	847133	36902258	14402308	1442	13433										
SSTR3	6753	broad.mit.edu;bcgsc.ca;mdanderson.org	37	chr22	37602677	37602677	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ccttgctggccactctgctgGgcggccgctcctgcccgctg	13	18	1	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SSTR3-522	NM_001051	exon2	c.C1166A	p.P389H	CTGCTGGGCGGCC	.	80	40	34	1	.	0	0	0	0	0	T	37602677	G	T	37602677	3	4	62	1	0	0	0	0	1	0	0	0	15236	1232	43	3	94	3	SSTR3	22	37602677	Missense_Mutation	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	700419	37602677	13701889	1443	13434										
CARD10	29775	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr22	37891531	37891531	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	cagccgtgctcacattactgCgggggcctcggtgccggctg	15	14	1	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CARD10-662	NM_014550	exon15	c.G2366A	p.R789H	TTACTGCGGGGGC	.	42	19	41	0	.	0	0	0	0	0	T	37891531	C	T	37891531	3	4	62	1	0	0	0	0	1	0	0	0	2650	768	27	1	756	1	CARD10	22	37891531	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	288854	37891531	13413035	1444	13435										
GCAT	23464	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr22	38205970	38205970	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ccccagggcctggcactgtcAtctttccaggcctgcccttg	10	17	2	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	GCAT-90	NM_001171690	exon2	c.A211G	p.I71V	ACTGTCATCTTTC	.	142	61	116	0	.	0	0	0	0	0	G	38205970	A	G	38205970	3	3	62	1	0	0	0	0	1	0	0	0	6304	217	8	4	217	4	GCAT	22	38205970	Missense_Mutation	SNP	A	TCGA-PK-A5HB-01A-11D-A29I-10	314439	38205970	13098596	1445	13436										
GALR3	8484	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	chr22	38221167	38221167	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gtacggccgcttcgccttcaGcccggccacctacgcctgcc	10	20	1	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	GALR3-90	NM_003614	exon2	c.G797A	p.S266N	CCTTCAGCCCGGC	.	87	35	15	0	.	0	0	0	0	0	A	38221167	G	A	38221167	3	1	62	1	0	0	0	0	1	0	0	0	6249	971	34	3	803	3	GALR3	22	38221167	Missense_Mutation	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	15197	38221167	13083399	1446	13437										
TMEM184B	25829	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr22	38620883	38620883	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	aacatctccacacagatgatGaagtcctggtagccggcagc	10	12	1	3	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TMEM184B-68	NM_001195071	exon8	c.C891T	p.F297F	GATGATGAAGTCC	.	208	76	157	1	.	52	27	25	0	0	A	38620883	G	A	38620883	2	1	62	1	0	0	0	0	0	0	0	1	16142	1281	45	3		3	TMEM184B	22	38620883	Silent	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	399716	38620883	12683683	1447	13438										
DNAJB7	150353	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr22	41257875	41257877	+	In_Frame_Del	DEL	CTT	CTT	-													0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ttctttgaattttctctctgCttcttctttattttctggat					novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	CTT	CTT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	DNAJB7-227	NM_145174	exon1	c.122_124del	p.41_42del	TCTCTGCTTCTTC	.	51	17	58	0	.	0	0	0	0	0	-	41257877	CTT	-	41257875	7	5	62	1	0	1	0	1	0	0	0	0	4636	797	28	0	809	0	DNAJB7	22	41257875	In_Frame_Del	DEL	CTT	TCGA-PK-A5HB-01A-11D-A29I-10	2636992	41257875	10046691	1448	13439										
L3MBTL2	83746	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr22	41621937	41621937	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gaatgacattgagctcacacCgccaaaaggtaagactagag	10	9	1	4	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	L3MBTL2-92	NM_031488	exon12	c.C1496T	p.P499L	TCACACCGCCAAA	.	87	35	81	0	.	1	1	0	0	0	T	41621937	C	T	41621937	3	4	62	1	0	0	0	0	1	0	0	0	8614	652	23	1	1542	1	L3MBTL2	22	41621937	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	364062	41621937	9682629	1449	13440										
MEI1	150365	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr22	42099452	42099453	+	Frame_Shift_Ins	INS	-	-	T													0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	catccacttcataagtgtgcINStttttggtaagattaagagg					novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	MEI1-70	NM_152513	exon2	c.292_293insT	p.L98fs	AGTGTGCTTTTTG	.	111	44	86	0	.	0	0	0	0	0	T	42099453	-	T	42099452	7	5	62	1	0	1	1	0	0	0	0	0	9493	797	28	0	298	0	MEI1	22	42099452	Frame_Shift_Ins	INS	-	TCGA-PK-A5HB-01A-11D-A29I-10	477515	42099452	9205114	1450	13441										
FAM109B	150368	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr22	42473559	42473559	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	tgcccgaggagtttgcctttGccatctgctttgatgcccct	10	13	1	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	FAM109B-90	NM_001002034	exon3	c.G262A	p.A88T	GCCTTTGCCATCT	.	110	46	79	0	.	1	1	0	0	0	A	42473559	G	A	42473559	3	1	62	1	0	0	0	0	1	0	0	0	5411	1319	46	3	264	3	FAM109B	22	42473559	Missense_Mutation	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	374107	42473559	8831007	1451	13442										
A4GALT	53947	hgsc.bcm.edu;broad.mit.edu	37	chr22	43089757	43089757	+	Frame_Shift_Del	DEL	G	G	-													0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gggccgtgggagggtggggtGgggggtgtcaaggtggggca					rs67879429		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	A4GALT-90	NM_017436	exon3	c.201delC	p.P67fs	TGGGGTGGGGGGT	.	36	17	19	0	.	0	0	0	0	0	-	43089757	G	-	43089757	7	5	62	1	0	1	0	1	0	0	0	0	6	1335	47	0	864	0	A4GALT	22	43089757	Frame_Shift_Del	DEL	G	TCGA-PK-A5HB-01A-11D-A29I-10	616198	43089757	8214809	1452	13443										
PPARA	5465	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr22	46627995	46627995	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	cgtatggaaatgggtttataActcgtgaattcctaaaaagc	9	6	0	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PPARA-611	NM_001001928	exon7	c.A1018G	p.T340A	TTTATAACTCGTG	.	243	100	208	2	.	3	1	2	0	0	G	46627995	A	G	46627995	3	3	62	1	0	0	0	0	1	0	0	0	12326	43	2	4	1036	4	PPARA	22	46627995	Missense_Mutation	SNP	A	TCGA-PK-A5HB-01A-11D-A29I-10	3538238	46627995	4676571	1453	13444										
PKDREJ	10343	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr22	46654833	46654833	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	tagaggatgcttttgaggagAtacctcctttagatccgctt	10	8	0	4	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PKDREJ-156	NM_006071	exon1	c.T4387C	p.S1463P	GAGGAGATACCTC	.	100	29	91	1	.	0	0	0	0	0	G	46654833	A	G	46654833	3	3	62	1	0	0	0	0	1	0	0	0	11999	333	12	4	2378	4	PKDREJ	22	46654833	Missense_Mutation	SNP	A	TCGA-PK-A5HB-01A-11D-A29I-10	26838	46654833	4649733	1454	13445										
PKDREJ	10343	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr22	46657944	46657944	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	tctgaagaaatacacgtggtCgcctttaagtgtttctggca	10	8	2	2	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PKDREJ-156	NM_006071	exon1	c.G1276A	p.D426N	CGTGGTCGCCTTT	.	140	73	111	0	.	0	0	0	0	0	T	46657944	C	T	46657944	3	4	62	1	0	0	0	0	1	0	0	0	11999	884	31	1	5489	1	PKDREJ	22	46657944	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	3111	46657944	4646622	1455	13446										
PKDREJ	10343	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	chr22	46658470	46658470	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	tgggcgatggcgcgcgcggcCgggcagtccagctgcaccga	18	14	0	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PKDREJ-156	NM_006071	exon1	c.G750C	p.P250P	CGCGGCCGGGCAG	.	175	79	15	0	.	0	0	0	0	0	G	46658470	C	G	46658470	2	3	62	1	0	0	0	0	0	0	0	1	11999	639	23	2		2	PKDREJ	22	46658470	Silent	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	526	46658470	4646096	1456	13447										
CELSR1	9620	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr22	46835094	46835094	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	acgcacactcacgtgagggaGatggtgaagtggaagcgctg	16	8	1	3	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CELSR1-525	NM_014246	exon3	c.C4398T	p.I1466I	GAGGGAGATGGTG	.	156	59	122	0	.	0	0	0	0	0	A	46835094	G	A	46835094	2	1	62	1	0	0	0	0	0	0	0	1	3227	932	33	3		3	CELSR1	22	46835094	Silent	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	176624	46835094	4469472	1457	13448										
CELSR1	9620	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr22	46931004	46931004	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	cgaagctcgtaggtgggctgCgtgaacaccgggtcgttgtc	16	10	0	1	rs200980756		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CELSR1-525	NM_014246	exon1	c.G2064A	p.T688T	GGGCTGCGTGAAC	.	84	36	69	1	C|0.999;T|0.000	0	0	0	0	0	T	46931004	C	T	46931004	2	4	62	1	0	0	0	0	0	0	0	1	3227	755	27	1		1	CELSR1	22	46931004	Silent	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	95910	46931004	4373562	1458	13449										
TRABD	80305	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr22	50636363	50636363	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	atcgtctcggagcgcgacgtCtacctaacctacatgctgcg	10	14	2	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	TRABD-90	NM_025204	exon8	c.C783T	p.V261V	CGACGTCTACCTA	.	144	69	62	0	.	21	9	12	0	0	T	50636363	C	T	50636363	2	4	62	1	0	0	0	0	0	0	0	1	16473	900	32	3		3	TRABD	22	50636363	Silent	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	3705359	50636363	668203	1459	13450										
MAPK11	5600	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr22	50705599	50705599	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	cagccacgttgctgggcttcAggtcctgcaggtcacgcgga	14	13	2	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	MAPK11-1402	NM_002751	exon6	c.T452C	p.L151P	GGCTTCAGGTCCT	.	146	55	51	0	.	0	0	0	0	0	G	50705599	A	G	50705599	3	3	62	1	0	0	0	0	1	0	0	0	9301	188	7	4	670	4	MAPK11	22	50705599	Missense_Mutation	SNP	A	TCGA-PK-A5HB-01A-11D-A29I-10	69236	50705599	598967	1460	13451										
SHANK3	85358	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chr22	51160574	51160574	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	cccgctgctgaagcagtcctCggacagcgagctcatggccc	12	16	1	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SHANK3-69	NM_033517	exon21	c.C4271T	p.S1424L	AGTCCTCGGACAG	.	71	30	18	0	.	13	3	10	0	0	T	51160574	C	T	51160574	3	4	62	1	0	0	0	0	1	0	0	0	14301	893	31	1	4447	1	SHANK3	22	51160574	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	454975	51160574	143992	1461	13452										
PPP2R3B	28227	broad.mit.edu;bcgsc.ca	37	chrX	299353	299353	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	actcacccgtcctcccagggCtctcccgcagtctcctcggc	8	21	3	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PPP2R3B-136	NM_013239	exon12	c.G1563A	p.E521E	CCAGGGCTCTCCC	.	76	55	43	1	.	0	0	0	0	0	T	299353	C	T	299353	2	4	62	1	0	0	0	0	0	0	0	1	12421	796	28	3		3	PPP2R3B	23	299353	Silent	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10		299353	154971207	1462	13453										
FRMPD4	9758	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	12728521	12728521	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	tgttctcttttgtgtagcctAtcacgcttctgatggaatcc	8	10	3	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	FRMPD4-263	NM_014728	exon14	c.A1474G	p.I492V	TAGCCTATCACGC	.	53	46	31	0	.	0	0	0	0	0	G	12728521	A	G	12728521	3	3	62	1	0	0	0	0	1	0	0	0	6078	449	16	4	1528	4	FRMPD4	23	12728521	Missense_Mutation	SNP	A	TCGA-PK-A5HB-01A-11D-A29I-10	12429168	12728521	142542039	1463	13454										
DCAF8L2	347442	broad.mit.edu;bcgsc.ca;mdanderson.org	37	chrX	27765447	27765447	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gaggaggaggaggaggaggaAgaagaacagcctcgggcggg	22	5	0	2	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	DCAF8L2-42	NM_001136533	exon1	c.A435G	p.E145E	GGAGGAAGAAGAA	.	30	27	26	0	.	0	0	0	0	0	G	27765447	A	G	27765447	2	3	62	1	0	0	0	0	0	0	0	1	4284	69	3	4		4	DCAF8L2	23	27765447	Silent	SNP	A	TCGA-PK-A5HB-01A-11D-A29I-10	15036926	27765447	127505113	1464	13455										
CASK	8573	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	41437770	41437770	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	tgtgccactacgtcgtgagtCtgaagtaaggcctagtgttt	12	8	1	2	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CASK-616	NM_001126054	exon15	c.G1326A	p.Q442Q	GTGAGTCTGAAGT	.	37	30	27	0	.	0	0	0	0	0	T	41437770	C	T	41437770	2	4	62	1	0	0	0	0	0	0	0	1	2671	912	32	3		3	CASK	23	41437770	Silent	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	13672323	41437770	113832790	1465	13456										
NUDT10	170685	broad.mit.edu	37	chrX	51076024	51076024	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gtccgagaggtgtacgaagaGgcgggagtcaaggggaagtt	19	5	1	2	rs2801626		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	NUDT10-90	NM_153183	exon2	c.G207A	p.E69E	CGAAGAGGCGGGA	.	240	5	123	2	.	3	0	3	0	0	A	51076024	G	A	51076024	2	1	62	1	0	0	0	0	0	0	0	1	10755	991	35	3		3	NUDT10	23	51076024	Silent	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	9638254	51076024	104194536	1466	13457										
SMC1A	8243	broad.mit.edu	37	chrX	53432788	53432788	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	agtcccggcctgtcttctccGagtccacaataatggcatcc	8	15	2	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	SMC1A-232	NM_006306	exon10	c.C1646T	p.S549L	TTCTCCGAGTCCA	.	145	5	121	0	.	14	14	0	0	0	A	53432788	G	A	53432788	3	1	62	1	0	0	0	0	1	0	0	0	14816	1059	37	1	2119	1	SMC1A	23	53432788	Missense_Mutation	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	2356764	53432788	101837772	1467	13458										
OTUD6A	139562	bcgsc.ca	37	chrX	69282461	69282461	+	Frame_Shift_Del	DEL	A	A	-													0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	caggcccagatccggagcttAaaaaactcggtccccaagac					novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	OTUD6A-541	NM_207320	exon1	c.87delA	p.L29fs	GAGCTTAAAAAAC	.	266	210	178	4	.	0	0	0	0	0	-	69282461	A	-	69282461	7	5	62	1	0	1	0	1	0	0	0	0	11345	359	13	0	89	0	OTUD6A	23	69282461	Frame_Shift_Del	DEL	A	TCGA-PK-A5HB-01A-11D-A29I-10	15849673	69282461	85988099	1468	13459										
ITM2A	9452	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	78616967	78616967	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	cacataagtttgaggcagatAtctgccactctaaaaatcaa	6	9	3	2	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ITM2A-131	NM_004867	exon5	c.T562A	p.Y188N	GCAGATATCTGCC	.	163	137	173	1	.	0	0	0	0	0	T	78616967	A	T	78616967	3	4	62	1	0	0	0	0	1	0	0	0	7933	449	16	5	237	5	ITM2A	23	78616967	Missense_Mutation	SNP	A	TCGA-PK-A5HB-01A-11D-A29I-10	9334506	78616967	76653593	1469	13460										
ZNF711	7552	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	84519342	84519342	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ccattaaaaattggcagtgaTggttcacaagaagatgctaa	9	6	1	3	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ZNF711-134	NM_021998	exon5	c.T684C	p.D228D	CAGTGATGGTTCA	.	143	125	120	0	.	2	2	0	0	0	C	84519342	T	C	84519342	2	2	62	1	0	0	0	0	0	0	0	1	18153	1461	51	4		4	ZNF711	23	84519342	Silent	SNP	T	TCGA-PK-A5HB-01A-11D-A29I-10	5902375	84519342	70751218	1470	13461										
CPXCR1	53336	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	88008936	88008936	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	tcagaataccatgtgggtaaAgcgaaaatatatagcatgtc	9	6	1	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	CPXCR1-133	NM_001184771	exon3	c.A521G	p.K174R	GGGTAAAGCGAAA	.	93	78	65	0	.	0	0	0	0	0	G	88008936	A	G	88008936	3	3	62	1	0	0	0	0	1	0	0	0	3842	72	3	4	523	4	CPXCR1	23	88008936	Missense_Mutation	SNP	A	TCGA-PK-A5HB-01A-11D-A29I-10	3489594	88008936	67261624	1471	13462										
NRK	203447	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chrX	105132368	105132368	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	acattgtgtccttctatggaGcatttttcaagctgagtccc	8	10	2	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	NRK-630	NM_198465	exon5	c.G334A	p.A112T	TATGGAGCATTTT	.	235	16	150	0	.	0	0	0	0	0	A	105132368	G	A	105132368	3	1	62	1	0	0	0	0	1	0	0	0	10684	971	34	3	352	3	NRK	23	105132368	Missense_Mutation	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	17123432	105132368	50138192	1472	13463										
NRK	203447	broad.mit.edu	37	chrX	105153236	105153236	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	aacaacaaaggcagggccagGcccctgaacaacagcagagg	12	12	0	2	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	NRK-630	NM_198465	exon13	c.G1603A	p.A535T	GGCCAGGCCCCTG	.	260	10	227	0	.	0	0	0	0	0	A	105153236	G	A	105153236	3	1	62	1	0	0	0	0	1	0	0	0	10684	1203	42	3	1653	3	NRK	23	105153236	Missense_Mutation	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	20868	105153236	50117324	1473	13464										
COL4A6	1288	ucsc.edu;bcgsc.ca	37	chrX	107681217	107681217	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	cacaacgtaaccaggagcagCcacaacctgaaatgggaggg	12	11	0	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	COL4A6-199	NM_001847	exon2	c.G21A	p.W7X	GAGCAGCCACAAC	.	222	193	195	2	.	0	0	0	0	0	T	107681217	C	T	107681217	4	4	62	1	0	0	0	0	0	1	0	0	3701	740	26	3	5230	3	COL4A6	23	107681217	Nonsense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	2527981	107681217	47589343	1474	13465										
PAK3	5063	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	110406821	110406821	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ttctgtggttgaatccattgCttcaccagcagtaccaaata	7	10	2	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PAK3-1043	NM_001128168	exon8	c.C740A	p.A247D	CCATTGCTTCACC	.	85	75	102	0	.	0	0	0	0	0	A	110406821	C	A	110406821	3	1	62	1	0	0	0	0	1	0	0	0	11431	797	28	3	770	3	PAK3	23	110406821	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	2725604	110406821	44863739	1475	13466										
KLHL13	90293	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	117033021	117033021	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ttatctggatcatatttctgCactatctctaccatacaacg	4	11	4	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	KLHL13-556	NM_001168299	exon8	c.G1827A	p.V609V	TTTCTGCACTATC	.	97	83	99	1	.	12	0	12	0	0	T	117033021	C	T	117033021	2	4	62	1	0	0	0	0	0	0	0	1	8390	697	25	3		3	KLHL13	23	117033021	Silent	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	6626200	117033021	38237539	1476	13467										
ZBTB33	10009	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chrX	119387857	119387857	+	Frame_Shift_Del	DEL	T	T	-													0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	tgatgatgatgatgatgtcaTtttttgctccgagattctgc					novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ZBTB33-132	NM_006777	exon2	c.587delT	p.I196fs	ATGTCATTTTTTG	.	65	54	46	0	.	0	0	0	0	0	-	119387857	T	-	119387857	7	5	62	1	0	1	0	1	0	0	0	0	17573	1493	52	0	589	0	ZBTB33	23	119387857	Frame_Shift_Del	DEL	T	TCGA-PK-A5HB-01A-11D-A29I-10	2354836	119387857	35882703	1477	13468										
THOC2	57187	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	122757038	122757038	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	ccaccaccaggcccattttgCacactggcaactgcattcct	6	17	0	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	THOC2-133	NM_001081550	exon29	c.G3600A	p.V1200V	ATTTTGCACACTG	.	88	71	116	1	.	27	1	26	0	0	T	122757038	C	T	122757038	2	4	62	1	0	0	0	0	0	0	0	1	15902	697	25	3		3	THOC2	23	122757038	Silent	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	3369181	122757038	32513522	1478	13469										
THOC2	57187	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	122820490	122820490	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	taacaaagatataaagaagtCatcgtgttctggcctgcatt	8	7	2	2	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	THOC2-133	NM_001081550	exon8	c.G676A	p.D226N	AGAAGTCATCGTG	.	120	105	124	0	.	6	0	6	0	0	T	122820490	C	T	122820490	3	4	62	1	0	0	0	0	1	0	0	0	15902	826	29	3	4229	3	THOC2	23	122820490	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	63452	122820490	32450070	1479	13470										
STAG2	10735	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	123215366	123215366	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gaaaacaagagaagccattgCcatgctacacaagtaatctc	7	10	1	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	STAG2-134	NM_001042749	exon28	c.C2912T	p.A971V	CCATTGCCATGCT	.	70	63	59	0	.	0	0	0	0	0	T	123215366	C	T	123215366	3	4	62	1	0	0	0	0	1	0	0	0	15280	739	26	3	3014	3	STAG2	23	123215366	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	394876	123215366	32055194	1480	13471										
DCAF12L2	340578	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	125298569	125298569	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gcctgaagggagaggcccccCagccacaaagagcttcatct	11	14	2	3	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	DCAF12L2-113	NM_001013628	exon1	c.G1339T	p.G447W	GCCCCCCAGCCAC	.	171	140	140	2	.	0	0	0	0	0	A	125298569	C	A	125298569	3	1	62	1	0	0	0	0	1	0	0	0	4271	594	21	3	56	3	DCAF12L2	23	125298569	Missense_Mutation	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	2083203	125298569	29971991	1481	13472										
IGSF1	3547	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	130416500	130416500	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	agatagtggcagctatagatGccagtatcactgtaggttac	11	7	1	2	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	IGSF1-133	NM_001555	exon7	c.C1164T	p.G388G	ATAGATGCCAGTA	.	196	174	148	1	.	0	0	0	0	0	A	130416500	G	A	130416500	2	1	62	1	0	0	0	0	0	0	0	1	7617	1306	46	3		3	IGSF1	23	130416500	Silent	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	5117931	130416500	24854060	1482	13473										
GPR112	139378	hgsc.bcm.edu;bcgsc.ca	37	chrX	135430724	135430725	+	Frame_Shift_Ins	INS	-	-	A													0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	atatatgctggggctacttcINSaaaaaacaaaatggtttcct					novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	GPR112-183	NM_153834	exon6	c.4859_4860insA	p.S1620fs	CTACTTCAAAAAA	.	57	45	52	1	.	0	0	0	0	0	A	135430725	-	A	135430724	7	5	62	1	0	1	1	0	0	0	0	0	6649	838	29	0	4869	0	GPR112	23	135430724	Frame_Shift_Ins	INS	-	TCGA-PK-A5HB-01A-11D-A29I-10	5014224	135430724	19839836	1483	13474										
MAGEC3	139081	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	140926205	140926205	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	atatgccttatccccagtggTgctcccacctcagccccagg	8	17	1	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	MAGEC3-555	NM_138702	exon1	c.T104C	p.V35A	CAGTGGTGCTCCC	.	174	152	102	1	.	0	0	0	0	0	C	140926205	T	C	140926205	3	2	62	1	0	0	0	0	1	0	0	0	9210	1696	59	4	106	4	MAGEC3	23	140926205	Missense_Mutation	SNP	T	TCGA-PK-A5HB-01A-11D-A29I-10	5495481	140926205	14344355	1484	13475										
MTMR1	8776	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	149931073	149931073	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	aatctcaaggagctgctggcCgtcagggcggagctgcagaa	15	10	2	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	MTMR1-131	NM_003828	exon15	c.C1869A	p.A623A	GCTGGCCGTCAGG	.	255	223	178	1	.	11	0	11	0	0	A	149931073	C	A	149931073	2	1	62	1	0	0	0	0	0	0	0	1	9966	639	23	2		2	MTMR1	23	149931073	Silent	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	9004868	149931073	5339487	1485	13476										
PRRG3	79057	ucsc.edu;bcgsc.ca	37	chrX	150869181	150869181	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	aaccggtacctagccagtcgCgccgggcacaccctcccccg	10	20	0	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PRRG3-134	NM_024082	exon4	c.C372T	p.R124R	CAGTCGCGCCGGG	.	134	113	118	2	.	0	0	0	0	0	T	150869181	C	T	150869181	2	4	62	1	0	0	0	0	0	0	0	1	12639	755	27	1		1	PRRG3	23	150869181	Silent	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	938108	150869181	4401379	1486	13477										
MAGEA1	4100	broad.mit.edu	37	chrX	152482236	152482236	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	caggaactcatagcgtgcggGatcactgtccggcacctgcc	12	14	2	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	MAGEA1-622	NM_004988	exon3	c.C775T	p.P259S	GTGCGGGATCACT	.	444	10	134	1	.	1	1	0	0	0	A	152482236	G	A	152482236	3	1	62	1	0	0	0	0	1	0	0	0	9191	1174	41	3	158	3	MAGEA1	23	152482236	Missense_Mutation	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	1613055	152482236	2788324	1487	13478										
ABCD1	215	hgsc.bcm.edu;broad.mit.edu	37	chrX	152994692	152994692	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	tgtcaccccccgcaggtggaGctggccctgctacagcgctc	12	17	1	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	ABCD1-130	NM_000033	exon2	c.G906A	p.E302E	GGTGGAGCTGGCC	.	80	4	62	0	.	1	1	0	0	0	A	152994692	G	A	152994692	2	1	62	1	0	0	0	0	0	0	0	1	60	962	34	3		3	ABCD1	23	152994692	Silent	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	512456	152994692	2275868	1488	13479										
FLNA	2316	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	153577327	153577327	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gtaggacacgctgtagagccGgctgcccacgtgcttcacca	12	14	1	1	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	FLNA-599	NM_001110556	exon48	c.C7834T	p.R2612W	AGAGCCGGCTGCC	.	192	172	144	0	.	234	32	202	0	0	A	153577327	G	A	153577327	3	1	62	1	0	0	0	0	1	0	0	0	5952	1115	39	1	113	1	FLNA	23	153577327	Missense_Mutation	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	582635	153577327	1693233	1489	13480										
FLNA	2316	broad.mit.edu;bcgsc.ca;mdanderson.org	37	chrX	153599554	153599554	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	tcggcgtcccgcgtgtcgacGccgccgcccggagccgcgcc	15	20	0	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	FLNA-599	NM_001456	exon2	c.C60T	p.G20G	GTCGACGCCGCCG	.	145	131	41	1	.	110	7	103	0	0	A	153599554	G	A	153599554	2	1	62	1	0	0	0	0	0	0	0	1	5952	1074	38	1		1	FLNA	23	153599554	Silent	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	22227	153599554	1671006	1490	13481										
PLXNA3	55558	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	153689660	153689660	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	tgcgcgggagactcagagttCtactcatacgtggaattccc	11	11	3	2	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	PLXNA3-132	NM_017514	exon3	c.C816T	p.F272F	AGAGTTCTACTCA	.	106	87	69	0	.	18	2	16	0	0	T	153689660	C	T	153689660	2	4	62	1	0	0	0	0	0	0	0	1	12150	912	32	3		3	PLXNA3	23	153689660	Silent	SNP	C	TCGA-PK-A5HB-01A-11D-A29I-10	90106	153689660	1580900	1491	13482										
FAM3A	60343	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	chrX	153740192	153740192	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	0.0719619823489477	106	0.232475284102645	1.20726793250568	1.69637595757219	1.15652473682155	3.00966564615842e-25	1.86599270061822e-23	0	gggccttacctgcagtcaccGagctctctggacctgtggat	12	13	2	0	novel		TCGA-PK-A5HB-01A-11D-A29I-10	TCGA-PK-A5HB-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dbc55717-0bee-4460-a952-1a4078094830	e6c172a7-1dbb-40b9-9850-a361ddcc7b28	.	FAM3A-130	NM_001171134	exon3	c.C140T	p.S47L	GTCACCGAGCTCT	.	34	29	21	0	.	0	0	0	0	0	A	153740192	G	A	153740192	3	1	62	1	0	0	0	0	1	0	0	0	5575	1059	37	1	580	1	FAM3A	23	153740192	Missense_Mutation	SNP	G	TCGA-PK-A5HB-01A-11D-A29I-10	50532	153740192	1530368	1492	13483										
